Query 044777
Match_columns 513
No_of_seqs 293 out of 1051
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 11:25:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044777.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044777hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gvn_B Zeta; postsegregational 99.8 2.5E-19 8.5E-24 178.5 21.0 170 211-429 29-208 (287)
2 2p5t_B PEZT; postsegregational 99.7 2.2E-15 7.5E-20 146.1 19.6 170 211-428 28-206 (253)
3 1ly1_A Polynucleotide kinase; 99.5 8.5E-14 2.9E-18 124.9 11.9 141 214-411 1-146 (181)
4 1ltq_A Polynucleotide kinase; 99.4 1.9E-12 6.6E-17 126.8 13.9 140 214-411 1-146 (301)
5 3zvl_A Bifunctional polynucleo 99.4 3.8E-12 1.3E-16 132.8 13.6 119 212-404 255-375 (416)
6 2rhm_A Putative kinase; P-loop 99.3 1.2E-11 4E-16 112.5 12.9 129 213-394 3-131 (193)
7 3a4m_A L-seryl-tRNA(SEC) kinas 99.3 3.1E-11 1.1E-15 117.6 13.0 133 214-407 3-135 (260)
8 1tev_A UMP-CMP kinase; ploop, 99.2 7.7E-10 2.6E-14 100.0 18.4 163 214-428 2-178 (196)
9 2yhs_A FTSY, cell division pro 99.2 1.5E-10 5.1E-15 124.6 14.3 139 82-258 195-334 (503)
10 1ukz_A Uridylate kinase; trans 99.2 1.4E-09 4.9E-14 100.2 18.1 161 212-429 12-186 (203)
11 2axn_A 6-phosphofructo-2-kinas 99.1 3.5E-10 1.2E-14 121.7 15.5 164 212-419 32-202 (520)
12 1knq_A Gluconate kinase; ALFA/ 99.1 5.3E-10 1.8E-14 100.8 14.2 126 213-398 6-131 (175)
13 1qf9_A UMP/CMP kinase, protein 99.1 4.1E-09 1.4E-13 95.0 19.0 158 213-429 4-176 (194)
14 2vli_A Antibiotic resistance p 99.1 2.9E-10 9.8E-15 102.7 9.9 121 214-389 4-126 (183)
15 3t61_A Gluconokinase; PSI-biol 99.1 5.3E-10 1.8E-14 103.5 11.9 126 214-402 17-142 (202)
16 3cm0_A Adenylate kinase; ATP-b 99.1 1.6E-09 5.4E-14 98.2 14.6 155 214-428 3-170 (186)
17 1vma_A Cell division protein F 99.1 3.3E-10 1.1E-14 114.5 11.0 127 83-258 16-145 (306)
18 2c95_A Adenylate kinase 1; tra 99.1 2.4E-09 8.3E-14 97.4 15.4 158 214-428 8-177 (196)
19 3lw7_A Adenylate kinase relate 99.1 2.8E-09 9.6E-14 93.7 14.6 155 216-429 2-161 (179)
20 1qhx_A CPT, protein (chloramph 99.0 1.5E-09 5.2E-14 97.7 12.3 126 214-388 2-133 (178)
21 4eun_A Thermoresistant glucoki 99.0 2.6E-09 8.8E-14 99.3 13.2 130 213-402 27-156 (200)
22 3b9q_A Chloroplast SRP recepto 99.0 8.8E-10 3E-14 110.9 9.3 137 85-257 2-140 (302)
23 2bwj_A Adenylate kinase 5; pho 98.9 5.9E-09 2E-13 95.0 12.4 87 214-314 11-105 (199)
24 1zu4_A FTSY; GTPase, signal re 98.9 1.2E-09 4E-14 111.0 7.4 139 86-258 7-146 (320)
25 2og2_A Putative signal recogni 98.9 3.3E-09 1.1E-13 109.6 9.5 140 82-257 56-197 (359)
26 2cdn_A Adenylate kinase; phosp 98.9 6.7E-09 2.3E-13 96.0 10.1 38 212-256 17-54 (201)
27 3dl0_A Adenylate kinase; phosp 98.9 1.2E-08 4.3E-13 95.0 11.9 155 217-429 2-199 (216)
28 3fb4_A Adenylate kinase; psych 98.9 1.2E-08 4.1E-13 94.9 11.7 155 217-429 2-199 (216)
29 2yvu_A Probable adenylyl-sulfa 98.8 2.1E-08 7.1E-13 91.6 11.9 123 212-387 10-132 (186)
30 3e70_C DPA, signal recognition 98.8 4.7E-09 1.6E-13 107.0 7.8 123 100-257 37-169 (328)
31 2pbr_A DTMP kinase, thymidylat 98.8 1.7E-07 5.8E-12 84.6 16.1 88 217-308 2-91 (195)
32 2bdt_A BH3686; alpha-beta prot 98.8 1E-07 3.5E-12 87.0 13.9 134 215-403 2-135 (189)
33 3dm5_A SRP54, signal recogniti 98.8 2.7E-08 9.1E-13 105.7 11.4 122 99-258 12-141 (443)
34 1bif_A 6-phosphofructo-2-kinas 98.8 8.3E-08 2.8E-12 101.2 15.1 107 212-322 36-145 (469)
35 2ze6_A Isopentenyl transferase 98.7 4.7E-08 1.6E-12 95.1 11.2 137 216-402 2-154 (253)
36 3kb2_A SPBC2 prophage-derived 98.7 2.4E-07 8.2E-12 82.1 14.7 34 217-257 3-36 (173)
37 2xb4_A Adenylate kinase; ATP-b 98.7 9.1E-08 3.1E-12 90.7 12.1 115 217-389 2-127 (223)
38 4gp7_A Metallophosphoesterase; 98.7 1.6E-07 5.6E-12 85.6 13.0 150 214-428 8-157 (171)
39 2f6r_A COA synthase, bifunctio 98.7 8.4E-08 2.9E-12 94.8 11.5 38 212-257 72-109 (281)
40 3tlx_A Adenylate kinase 2; str 98.7 1.1E-07 3.9E-12 91.6 12.2 37 213-256 27-63 (243)
41 2qor_A Guanylate kinase; phosp 98.7 5.2E-08 1.8E-12 90.7 9.3 152 213-428 10-181 (204)
42 1aky_A Adenylate kinase; ATP:A 98.7 4.4E-08 1.5E-12 91.9 8.9 36 214-256 3-38 (220)
43 1rj9_A FTSY, signal recognitio 98.7 1.9E-08 6.5E-13 101.4 6.3 134 84-257 5-142 (304)
44 3be4_A Adenylate kinase; malar 98.6 2.1E-07 7.2E-12 87.5 11.7 35 215-256 5-39 (217)
45 3vaa_A Shikimate kinase, SK; s 98.6 8.5E-07 2.9E-11 82.1 14.8 37 214-257 24-60 (199)
46 3umf_A Adenylate kinase; rossm 98.6 1.9E-07 6.4E-12 90.2 10.4 140 212-412 26-178 (217)
47 1m7g_A Adenylylsulfate kinase; 98.6 3.9E-07 1.3E-11 85.2 12.1 83 213-308 23-106 (211)
48 2z0h_A DTMP kinase, thymidylat 98.6 1.1E-06 3.8E-11 79.7 14.8 22 217-238 2-23 (197)
49 1jjv_A Dephospho-COA kinase; P 98.6 3.5E-07 1.2E-11 84.5 11.3 35 215-257 2-36 (206)
50 3trf_A Shikimate kinase, SK; a 98.6 6.8E-07 2.3E-11 80.9 12.8 38 215-259 5-42 (185)
51 3uie_A Adenylyl-sulfate kinase 98.5 5.6E-07 1.9E-11 83.4 12.4 118 213-385 23-140 (200)
52 3kl4_A SRP54, signal recogniti 98.5 1.7E-07 5.9E-12 99.2 9.4 122 99-258 8-138 (433)
53 2plr_A DTMP kinase, probable t 98.5 3.2E-06 1.1E-10 77.3 16.4 25 214-238 3-27 (213)
54 1zd8_A GTP:AMP phosphotransfer 98.5 6.7E-07 2.3E-11 84.3 11.9 36 214-256 6-41 (227)
55 1nks_A Adenylate kinase; therm 98.5 1.7E-06 5.7E-11 77.8 13.9 39 216-256 2-40 (194)
56 1zak_A Adenylate kinase; ATP:A 98.5 6.1E-07 2.1E-11 84.2 10.7 36 214-256 4-39 (222)
57 2j37_W Signal recognition part 98.5 3.3E-07 1.1E-11 98.7 9.8 126 95-258 8-142 (504)
58 1e6c_A Shikimate kinase; phosp 98.5 1.6E-06 5.6E-11 77.2 12.6 36 216-258 3-38 (173)
59 1j8m_F SRP54, signal recogniti 98.4 3.3E-07 1.1E-11 92.0 8.4 127 100-258 10-139 (297)
60 1e4v_A Adenylate kinase; trans 98.4 1.2E-06 4E-11 81.9 10.3 33 217-256 2-34 (214)
61 1uj2_A Uridine-cytidine kinase 98.4 4.5E-06 1.5E-10 80.3 14.6 47 212-258 19-68 (252)
62 2iyv_A Shikimate kinase, SK; t 98.4 1.3E-06 4.5E-11 79.1 10.0 36 216-258 3-38 (184)
63 4eaq_A DTMP kinase, thymidylat 98.4 7.2E-06 2.5E-10 78.7 15.6 26 213-238 24-49 (229)
64 3sr0_A Adenylate kinase; phosp 98.4 2.9E-06 9.8E-11 80.9 12.6 140 217-412 2-169 (206)
65 2xxa_A Signal recognition part 98.3 4.9E-07 1.7E-11 95.4 7.1 121 104-258 16-142 (433)
66 3iij_A Coilin-interacting nucl 98.3 3.2E-07 1.1E-11 83.0 4.9 39 213-258 9-47 (180)
67 2px0_A Flagellar biosynthesis 98.3 4.9E-07 1.7E-11 90.6 6.7 104 117-258 40-147 (296)
68 2wwf_A Thymidilate kinase, put 98.3 8.7E-07 3E-11 81.6 7.8 26 213-238 8-33 (212)
69 1ak2_A Adenylate kinase isoenz 98.3 5.5E-06 1.9E-10 78.7 13.5 37 213-256 14-50 (233)
70 2v3c_C SRP54, signal recogniti 98.3 2.1E-07 7.2E-12 98.2 4.0 126 99-258 10-140 (432)
71 3r20_A Cytidylate kinase; stru 98.3 8E-06 2.7E-10 79.7 14.9 60 372-431 150-213 (233)
72 1x6v_B Bifunctional 3'-phospho 98.3 2.3E-06 7.9E-11 94.5 11.8 124 212-388 49-172 (630)
73 2qt1_A Nicotinamide riboside k 98.3 8.7E-06 3E-10 75.3 13.9 39 213-257 19-57 (207)
74 2ffh_A Protein (FFH); SRP54, s 98.3 1.3E-06 4.5E-11 92.2 9.3 125 101-258 13-139 (425)
75 2pt5_A Shikimate kinase, SK; a 98.3 2.2E-06 7.7E-11 76.1 9.2 35 217-258 2-36 (168)
76 1nn5_A Similar to deoxythymidy 98.3 2.7E-06 9.1E-11 78.3 9.9 26 213-238 7-32 (215)
77 1kht_A Adenylate kinase; phosp 98.3 3.1E-06 1.1E-10 76.1 10.1 40 215-256 3-42 (192)
78 4edh_A DTMP kinase, thymidylat 98.2 1.9E-05 6.5E-10 75.5 15.0 26 213-238 4-29 (213)
79 3lv8_A DTMP kinase, thymidylat 98.2 2.4E-05 8.1E-10 76.3 15.8 27 212-238 24-50 (236)
80 1zp6_A Hypothetical protein AT 98.2 1.3E-05 4.5E-10 72.6 13.0 40 214-258 8-47 (191)
81 1m8p_A Sulfate adenylyltransfe 98.2 1.6E-05 5.6E-10 86.6 16.0 104 201-317 381-486 (573)
82 2pez_A Bifunctional 3'-phospho 98.2 6.5E-06 2.2E-10 74.5 10.8 44 213-258 3-46 (179)
83 1rz3_A Hypothetical protein rb 98.2 3.1E-06 1.1E-10 78.7 8.8 43 213-257 20-62 (201)
84 4tmk_A Protein (thymidylate ki 98.2 4E-05 1.4E-09 73.3 16.4 25 214-238 2-26 (213)
85 1vht_A Dephospho-COA kinase; s 98.2 1.3E-05 4.5E-10 74.7 12.7 36 214-257 3-38 (218)
86 3a00_A Guanylate kinase, GMP k 98.2 1.9E-07 6.5E-12 85.8 -0.0 24 215-238 1-24 (186)
87 2gks_A Bifunctional SAT/APS ki 98.2 4.2E-06 1.4E-10 90.7 10.4 121 183-316 335-460 (546)
88 2if2_A Dephospho-COA kinase; a 98.2 3.5E-06 1.2E-10 77.5 8.2 33 217-257 3-35 (204)
89 1kag_A SKI, shikimate kinase I 98.2 1.5E-05 5E-10 71.1 11.8 37 214-257 3-39 (173)
90 2jaq_A Deoxyguanosine kinase; 98.1 6.9E-05 2.4E-09 67.9 15.1 22 217-238 2-23 (205)
91 2j41_A Guanylate kinase; GMP, 98.1 3.5E-06 1.2E-10 77.0 6.5 25 214-238 5-29 (207)
92 4i1u_A Dephospho-COA kinase; s 98.1 2.9E-05 9.8E-10 74.8 13.0 35 215-257 9-43 (210)
93 1y63_A LMAJ004144AAA protein; 98.1 6.5E-06 2.2E-10 75.4 8.1 41 211-257 6-46 (184)
94 3v9p_A DTMP kinase, thymidylat 98.1 1.9E-05 6.5E-10 76.5 11.4 26 213-238 23-48 (227)
95 1ls1_A Signal recognition part 98.0 1.5E-05 5.2E-10 79.5 10.1 123 103-258 15-139 (295)
96 2grj_A Dephospho-COA kinase; T 98.0 4.6E-06 1.6E-10 78.5 5.8 38 213-257 10-47 (192)
97 1via_A Shikimate kinase; struc 98.0 1.9E-05 6.4E-10 71.2 9.5 35 217-258 6-40 (175)
98 4hlc_A DTMP kinase, thymidylat 98.0 0.00037 1.3E-08 66.0 18.6 24 215-238 2-25 (205)
99 3tr0_A Guanylate kinase, GMP k 98.0 9.9E-06 3.4E-10 74.1 7.1 25 214-238 6-30 (205)
100 2h92_A Cytidylate kinase; ross 98.0 0.00015 5E-09 67.3 15.1 37 214-257 2-38 (219)
101 3a8t_A Adenylate isopentenyltr 98.0 5.2E-05 1.8E-09 78.1 12.8 144 213-389 38-195 (339)
102 1kgd_A CASK, peripheral plasma 98.0 4.2E-06 1.4E-10 76.5 4.0 25 214-238 4-28 (180)
103 3tau_A Guanylate kinase, GMP k 98.0 9.7E-06 3.3E-10 75.9 6.6 25 214-238 7-31 (208)
104 1ex7_A Guanylate kinase; subst 97.9 2.2E-05 7.6E-10 74.0 8.9 77 218-309 4-101 (186)
105 1zuh_A Shikimate kinase; alpha 97.9 2.8E-05 9.4E-10 69.5 9.1 37 215-258 7-43 (168)
106 1cke_A CK, MSSA, protein (cyti 97.9 2.6E-05 8.9E-10 72.5 9.3 36 215-257 5-40 (227)
107 4e22_A Cytidylate kinase; P-lo 97.9 8.3E-05 2.8E-09 71.9 13.1 37 214-257 26-62 (252)
108 3crm_A TRNA delta(2)-isopenten 97.9 5.1E-05 1.7E-09 77.5 11.8 36 214-256 4-39 (323)
109 1q3t_A Cytidylate kinase; nucl 97.9 8.8E-05 3E-09 70.4 12.5 38 213-257 14-51 (236)
110 3gmt_A Adenylate kinase; ssgci 97.9 4.1E-05 1.4E-09 74.8 9.7 34 218-258 11-45 (230)
111 3ld9_A DTMP kinase, thymidylat 97.9 0.00018 6E-09 69.7 14.0 27 212-238 18-44 (223)
112 3foz_A TRNA delta(2)-isopenten 97.9 9.9E-05 3.4E-09 75.4 12.6 37 213-256 8-44 (316)
113 3c8u_A Fructokinase; YP_612366 97.8 0.00031 1.1E-08 65.4 14.7 51 370-422 150-204 (208)
114 1gtv_A TMK, thymidylate kinase 97.8 3.8E-06 1.3E-10 77.4 0.8 22 217-238 2-23 (214)
115 3exa_A TRNA delta(2)-isopenten 97.8 0.00011 3.9E-09 75.1 11.3 36 214-256 2-37 (322)
116 3ney_A 55 kDa erythrocyte memb 97.7 0.00016 5.5E-09 68.8 10.1 26 213-238 17-42 (197)
117 3fdi_A Uncharacterized protein 97.7 0.0005 1.7E-08 64.7 13.0 36 215-257 6-41 (201)
118 1s96_A Guanylate kinase, GMP k 97.6 0.00036 1.2E-08 66.8 11.9 27 212-238 13-39 (219)
119 3hdt_A Putative kinase; struct 97.6 0.0018 6E-08 62.4 15.4 38 214-258 13-50 (223)
120 1uf9_A TT1252 protein; P-loop, 97.5 3.8E-05 1.3E-09 69.9 3.4 38 212-257 5-42 (203)
121 3lnc_A Guanylate kinase, GMP k 97.5 0.0001 3.4E-09 69.5 6.1 26 213-238 25-51 (231)
122 3hjn_A DTMP kinase, thymidylat 97.5 0.0038 1.3E-07 58.5 16.9 84 217-307 2-89 (197)
123 2v54_A DTMP kinase, thymidylat 97.4 0.00037 1.3E-08 63.4 8.0 25 214-238 3-27 (204)
124 3eph_A TRNA isopentenyltransfe 97.3 0.00042 1.4E-08 73.0 8.8 35 215-256 2-36 (409)
125 3nwj_A ATSK2; P loop, shikimat 97.3 0.0021 7.1E-08 62.9 12.6 36 215-257 48-83 (250)
126 3cr8_A Sulfate adenylyltranfer 97.2 0.00092 3.2E-08 72.7 9.8 44 213-258 367-411 (552)
127 3bos_A Putative DNA replicatio 97.2 0.00078 2.7E-08 61.9 7.6 43 214-258 51-93 (242)
128 3ake_A Cytidylate kinase; CMP 97.2 0.00012 4.1E-09 66.8 2.1 35 217-258 4-38 (208)
129 2gza_A Type IV secretion syste 97.2 0.0017 5.7E-08 66.5 10.6 140 215-405 175-318 (361)
130 2qz4_A Paraplegin; AAA+, SPG7, 97.1 0.0011 3.7E-08 62.5 8.3 73 167-257 4-76 (262)
131 3d3q_A TRNA delta(2)-isopenten 97.1 0.00028 9.4E-09 72.6 4.3 36 214-256 6-41 (340)
132 3asz_A Uridine kinase; cytidin 97.1 0.00026 8.8E-09 65.3 3.4 39 213-256 4-42 (211)
133 2bbw_A Adenylate kinase 4, AK4 97.1 0.00013 4.4E-09 69.6 1.2 36 214-256 26-61 (246)
134 2x8a_A Nuclear valosin-contain 96.9 0.00094 3.2E-08 65.6 5.8 34 218-256 47-80 (274)
135 1sq5_A Pantothenate kinase; P- 96.9 0.0008 2.7E-08 67.0 5.1 44 212-257 77-122 (308)
136 1a7j_A Phosphoribulokinase; tr 96.9 0.00028 9.7E-09 70.2 1.8 43 214-258 4-46 (290)
137 4b4t_M 26S protease regulatory 96.9 0.0013 4.4E-08 69.7 6.8 74 166-256 178-251 (434)
138 1lv7_A FTSH; alpha/beta domain 96.8 0.00096 3.3E-08 63.6 4.9 74 166-257 9-82 (257)
139 4b4t_L 26S protease subunit RP 96.8 0.0018 6.2E-08 68.6 7.0 73 167-256 179-251 (437)
140 4b4t_J 26S protease regulatory 96.8 0.0014 4.9E-08 68.9 6.1 71 166-256 145-218 (405)
141 3b9p_A CG5977-PA, isoform A; A 96.7 0.0055 1.9E-07 59.3 9.3 73 166-256 18-90 (297)
142 3h4m_A Proteasome-activating n 96.7 0.0049 1.7E-07 59.1 8.9 38 214-256 50-87 (285)
143 3tqc_A Pantothenate kinase; bi 96.7 0.0015 5E-08 66.5 5.2 45 212-257 89-134 (321)
144 3eie_A Vacuolar protein sortin 96.6 0.0043 1.5E-07 61.7 8.2 72 167-256 16-87 (322)
145 4fcw_A Chaperone protein CLPB; 96.6 0.0034 1.1E-07 60.8 6.8 43 214-258 46-88 (311)
146 4b4t_H 26S protease regulatory 96.5 0.0041 1.4E-07 66.6 7.8 95 136-256 178-279 (467)
147 4b4t_I 26S protease regulatory 96.5 0.0043 1.5E-07 65.9 7.9 101 137-256 152-252 (437)
148 1xwi_A SKD1 protein; VPS4B, AA 96.5 0.0015 5.2E-08 65.4 4.2 73 167-256 10-82 (322)
149 3cf0_A Transitional endoplasmi 96.5 0.0027 9.1E-08 62.7 5.9 38 214-256 48-85 (301)
150 1g8f_A Sulfate adenylyltransfe 96.5 0.0022 7.5E-08 69.2 5.6 74 182-255 358-435 (511)
151 4b4t_K 26S protease regulatory 96.5 0.0072 2.5E-07 63.8 9.4 73 167-256 170-242 (428)
152 1ixz_A ATP-dependent metallopr 96.5 0.0026 9E-08 60.4 5.5 34 218-256 52-85 (254)
153 2w0m_A SSO2452; RECA, SSPF, un 96.5 0.0012 4.2E-08 60.5 2.9 41 214-256 22-62 (235)
154 3u61_B DNA polymerase accessor 96.5 0.0013 4.3E-08 64.7 3.2 69 159-256 16-84 (324)
155 1svm_A Large T antigen; AAA+ f 96.4 0.0049 1.7E-07 64.0 7.5 27 212-238 166-192 (377)
156 1odf_A YGR205W, hypothetical 3 96.4 0.0023 7.9E-08 63.8 4.9 44 212-257 28-74 (290)
157 1jbk_A CLPB protein; beta barr 96.4 0.0026 9E-08 55.6 4.6 25 214-238 42-66 (195)
158 2jeo_A Uridine-cytidine kinase 96.4 0.0019 6.4E-08 61.7 3.7 35 204-238 14-48 (245)
159 2dr3_A UPF0273 protein PH0284; 96.4 0.0017 6E-08 60.3 3.4 41 214-256 22-62 (247)
160 1lvg_A Guanylate kinase, GMP k 96.4 0.0012 4.2E-08 61.3 2.3 23 215-237 4-26 (198)
161 1p5z_B DCK, deoxycytidine kina 96.4 0.0013 4.4E-08 63.4 2.4 27 212-238 21-47 (263)
162 3d8b_A Fidgetin-like protein 1 96.4 0.0027 9.4E-08 64.3 5.0 38 214-256 116-153 (357)
163 2ehv_A Hypothetical protein PH 96.3 0.0016 5.6E-08 60.6 2.8 42 214-256 29-70 (251)
164 1iy2_A ATP-dependent metallopr 96.3 0.0041 1.4E-07 60.2 5.6 34 218-256 76-109 (278)
165 1znw_A Guanylate kinase, GMP k 96.2 0.0021 7.3E-08 59.6 3.3 26 213-238 18-43 (207)
166 2w58_A DNAI, primosome compone 96.2 0.0021 7E-08 58.8 3.1 40 215-256 54-93 (202)
167 3t15_A Ribulose bisphosphate c 96.2 0.0019 6.3E-08 63.8 3.0 40 212-256 33-72 (293)
168 2p65_A Hypothetical protein PF 96.2 0.003 1E-07 55.5 3.7 24 215-238 43-66 (187)
169 2cvh_A DNA repair and recombin 96.2 0.0024 8.3E-08 58.4 3.1 37 214-255 19-55 (220)
170 2ce7_A Cell division protein F 96.2 0.014 4.9E-07 62.3 9.5 73 167-257 14-86 (476)
171 3ec2_A DNA replication protein 96.2 0.0022 7.6E-08 57.7 2.8 41 215-256 38-78 (180)
172 2kjq_A DNAA-related protein; s 96.1 0.0027 9.2E-08 56.9 3.1 41 215-257 36-76 (149)
173 4a74_A DNA repair and recombin 96.1 0.0027 9.3E-08 58.4 3.1 42 214-255 24-69 (231)
174 3syl_A Protein CBBX; photosynt 96.1 0.012 4E-07 57.1 7.8 44 214-257 66-111 (309)
175 3aez_A Pantothenate kinase; tr 96.1 0.0031 1.1E-07 63.5 3.8 43 212-256 87-131 (312)
176 3pfi_A Holliday junction ATP-d 96.1 0.0043 1.5E-07 61.2 4.7 72 160-256 20-91 (338)
177 1htw_A HI0065; nucleotide-bind 96.1 0.0035 1.2E-07 57.1 3.7 25 214-238 32-56 (158)
178 1njg_A DNA polymerase III subu 96.1 0.0038 1.3E-07 56.3 4.0 25 214-238 44-68 (250)
179 2qp9_X Vacuolar protein sortin 96.1 0.0039 1.3E-07 63.3 4.3 80 159-256 41-120 (355)
180 1ye8_A Protein THEP1, hypothet 96.0 0.0031 1.1E-07 58.2 3.2 22 217-238 2-23 (178)
181 1z6g_A Guanylate kinase; struc 96.0 0.0026 9E-08 60.0 2.7 26 213-238 21-46 (218)
182 3tmk_A Thymidylate kinase; pho 96.0 0.014 4.7E-07 56.0 7.6 25 214-238 4-28 (216)
183 3tif_A Uncharacterized ABC tra 96.0 0.0043 1.5E-07 59.7 4.1 42 213-257 29-70 (235)
184 2qmh_A HPR kinase/phosphorylas 96.0 0.0055 1.9E-07 59.1 4.7 35 214-256 33-67 (205)
185 3vfd_A Spastin; ATPase, microt 96.0 0.017 5.7E-07 58.9 8.5 74 166-257 112-185 (389)
186 2ocp_A DGK, deoxyguanosine kin 95.9 0.0038 1.3E-07 59.1 3.4 25 214-238 1-25 (241)
187 2eyu_A Twitching motility prot 95.9 0.0038 1.3E-07 61.2 3.4 41 214-256 24-64 (261)
188 1yrb_A ATP(GTP)binding protein 95.9 0.0069 2.4E-07 57.3 5.0 41 212-255 11-51 (262)
189 2vp4_A Deoxynucleoside kinase; 95.9 0.0047 1.6E-07 58.4 3.8 27 212-238 17-43 (230)
190 1n0w_A DNA repair protein RAD5 95.8 0.0052 1.8E-07 57.1 3.8 42 214-255 23-68 (243)
191 2r62_A Cell division protease 95.8 0.002 7E-08 61.4 1.0 36 217-257 46-81 (268)
192 3p32_A Probable GTPase RV1496/ 95.8 0.0044 1.5E-07 62.9 3.5 41 213-255 77-117 (355)
193 3kta_A Chromosome segregation 95.8 0.0042 1.4E-07 55.7 3.0 23 215-237 26-48 (182)
194 2zan_A Vacuolar protein sortin 95.8 0.0063 2.2E-07 63.7 4.6 74 166-256 131-204 (444)
195 1in4_A RUVB, holliday junction 95.8 0.0039 1.3E-07 62.4 2.9 25 214-238 50-74 (334)
196 1mv5_A LMRA, multidrug resista 95.8 0.0081 2.8E-07 57.9 5.0 42 212-256 25-66 (243)
197 1sxj_A Activator 1 95 kDa subu 95.8 0.0073 2.5E-07 64.3 5.1 87 158-257 28-114 (516)
198 4g1u_C Hemin import ATP-bindin 95.7 0.0076 2.6E-07 59.2 4.7 42 213-257 35-76 (266)
199 3czq_A Putative polyphosphate 95.7 0.067 2.3E-06 54.3 11.7 156 214-418 85-245 (304)
200 3cf2_A TER ATPase, transitiona 95.7 0.017 5.9E-07 65.5 8.1 70 167-256 202-274 (806)
201 1sxj_C Activator 1 40 kDa subu 95.7 0.0054 1.8E-07 61.1 3.6 53 161-238 17-69 (340)
202 1l8q_A Chromosomal replication 95.7 0.0035 1.2E-07 61.8 2.2 41 215-257 37-77 (324)
203 1nij_A Hypothetical protein YJ 95.7 0.0073 2.5E-07 60.4 4.4 23 216-238 5-27 (318)
204 3n70_A Transport activator; si 95.7 0.0079 2.7E-07 52.8 4.1 36 218-256 27-62 (145)
205 1xjc_A MOBB protein homolog; s 95.7 0.0058 2E-07 56.8 3.4 24 215-238 4-27 (169)
206 2e87_A Hypothetical protein PH 95.7 0.059 2E-06 54.4 11.0 26 213-238 165-190 (357)
207 2pcj_A ABC transporter, lipopr 95.6 0.0046 1.6E-07 59.0 2.5 40 214-256 29-68 (224)
208 1ofh_A ATP-dependent HSL prote 95.6 0.006 2E-07 58.6 3.3 39 214-257 49-87 (310)
209 1osn_A Thymidine kinase, VZV-T 95.6 0.07 2.4E-06 54.8 11.3 25 214-238 11-36 (341)
210 2cbz_A Multidrug resistance-as 95.5 0.0066 2.3E-07 58.5 3.2 26 213-238 29-54 (237)
211 2dhr_A FTSH; AAA+ protein, hex 95.5 0.013 4.3E-07 63.1 5.6 74 166-257 28-101 (499)
212 1f2t_A RAD50 ABC-ATPase; DNA d 95.5 0.0083 2.8E-07 53.7 3.5 24 214-237 22-45 (149)
213 2onk_A Molybdate/tungstate ABC 95.5 0.0066 2.3E-07 58.8 3.1 38 216-256 25-62 (240)
214 1b0u_A Histidine permease; ABC 95.4 0.0073 2.5E-07 59.1 3.2 41 213-256 30-70 (262)
215 1d2n_A N-ethylmaleimide-sensit 95.4 0.0093 3.2E-07 57.3 3.8 35 213-252 62-96 (272)
216 2ixe_A Antigen peptide transpo 95.4 0.01 3.5E-07 58.4 4.2 41 213-256 43-83 (271)
217 2chg_A Replication factor C sm 95.4 0.013 4.5E-07 52.3 4.6 21 218-238 41-61 (226)
218 2pze_A Cystic fibrosis transme 95.4 0.0065 2.2E-07 58.2 2.7 26 213-238 32-57 (229)
219 1ji0_A ABC transporter; ATP bi 95.4 0.0065 2.2E-07 58.5 2.7 41 213-256 30-70 (240)
220 2olj_A Amino acid ABC transpor 95.3 0.0078 2.7E-07 59.2 3.2 41 213-256 48-88 (263)
221 1cr0_A DNA primase/helicase; R 95.3 0.008 2.7E-07 58.6 3.2 40 214-254 34-73 (296)
222 1g6h_A High-affinity branched- 95.3 0.0077 2.6E-07 58.6 3.0 41 213-256 31-71 (257)
223 3hr8_A Protein RECA; alpha and 95.3 0.0095 3.2E-07 61.4 3.8 41 214-256 60-100 (356)
224 1vpl_A ABC transporter, ATP-bi 95.3 0.0082 2.8E-07 58.8 3.2 41 213-256 39-79 (256)
225 2zu0_C Probable ATP-dependent 95.3 0.0086 2.9E-07 58.7 3.3 43 213-256 44-86 (267)
226 3b85_A Phosphate starvation-in 95.3 0.0073 2.5E-07 57.3 2.7 23 215-237 22-44 (208)
227 1hqc_A RUVB; extended AAA-ATPa 95.3 0.013 4.3E-07 57.1 4.4 37 215-256 38-74 (324)
228 1jr3_A DNA polymerase III subu 95.3 0.0072 2.5E-07 59.8 2.7 25 214-238 37-61 (373)
229 3gfo_A Cobalt import ATP-bindi 95.3 0.0082 2.8E-07 59.5 3.0 41 213-256 32-72 (275)
230 2yz2_A Putative ABC transporte 95.3 0.0088 3E-07 58.6 3.2 41 213-256 31-71 (266)
231 2ghi_A Transport protein; mult 95.2 0.0089 3E-07 58.4 3.2 40 213-256 44-83 (260)
232 1sgw_A Putative ABC transporte 95.2 0.0073 2.5E-07 57.7 2.5 40 214-256 34-73 (214)
233 2d2e_A SUFC protein; ABC-ATPas 95.2 0.0092 3.1E-07 57.8 3.2 43 213-256 27-69 (250)
234 1sxj_E Activator 1 40 kDa subu 95.2 0.0078 2.7E-07 59.5 2.7 51 376-426 193-244 (354)
235 1sxj_D Activator 1 41 kDa subu 95.2 0.0061 2.1E-07 59.8 1.9 53 161-238 29-81 (353)
236 2ff7_A Alpha-hemolysin translo 95.1 0.0096 3.3E-07 57.8 3.1 40 214-256 34-73 (247)
237 2qi9_C Vitamin B12 import ATP- 95.1 0.0096 3.3E-07 58.0 3.0 39 214-256 25-63 (249)
238 3uk6_A RUVB-like 2; hexameric 95.1 0.011 3.6E-07 58.8 3.4 51 168-238 43-93 (368)
239 2c9o_A RUVB-like 1; hexameric 95.1 0.013 4.3E-07 61.4 4.1 67 167-256 35-101 (456)
240 1p9r_A General secretion pathw 95.1 0.015 5.1E-07 61.1 4.6 40 214-256 166-205 (418)
241 2i3b_A HCR-ntpase, human cance 95.1 0.009 3.1E-07 55.8 2.6 22 217-238 3-24 (189)
242 3bh0_A DNAB-like replicative h 95.1 0.021 7.3E-07 56.9 5.4 72 177-254 30-105 (315)
243 2orw_A Thymidine kinase; TMTK, 95.1 0.01 3.4E-07 55.0 2.8 24 215-238 3-26 (184)
244 2p67_A LAO/AO transport system 95.1 0.0098 3.4E-07 60.0 3.0 42 213-256 54-95 (341)
245 3sop_A Neuronal-specific septi 95.1 0.0094 3.2E-07 58.6 2.8 22 217-238 4-25 (270)
246 2qm8_A GTPase/ATPase; G protei 95.1 0.01 3.6E-07 60.1 3.2 25 213-237 53-77 (337)
247 3hws_A ATP-dependent CLP prote 95.1 0.05 1.7E-06 54.7 8.1 38 214-256 50-87 (363)
248 2bjv_A PSP operon transcriptio 95.1 0.018 6.3E-07 54.9 4.7 38 217-256 31-68 (265)
249 2nq2_C Hypothetical ABC transp 95.0 0.01 3.5E-07 57.8 3.0 26 213-238 29-54 (253)
250 2ihy_A ABC transporter, ATP-bi 95.0 0.01 3.6E-07 58.7 3.0 41 213-256 45-85 (279)
251 1c9k_A COBU, adenosylcobinamid 95.0 0.015 5.3E-07 54.6 3.9 33 394-426 139-172 (180)
252 1iqp_A RFCS; clamp loader, ext 95.0 0.01 3.6E-07 57.2 2.8 51 163-238 19-69 (327)
253 2zts_A Putative uncharacterize 95.0 0.011 3.7E-07 54.9 2.7 55 197-255 15-69 (251)
254 1fnn_A CDC6P, cell division co 94.9 0.018 6E-07 57.1 4.4 38 217-256 46-84 (389)
255 3jvv_A Twitching mobility prot 94.9 0.014 4.9E-07 59.9 3.8 24 215-238 123-146 (356)
256 2ewv_A Twitching motility prot 94.9 0.014 4.7E-07 60.0 3.7 25 214-238 135-159 (372)
257 1np6_A Molybdopterin-guanine d 94.9 0.014 4.8E-07 54.0 3.3 24 215-238 6-29 (174)
258 3qks_A DNA double-strand break 94.9 0.015 5E-07 54.5 3.5 24 214-237 22-45 (203)
259 2zr9_A Protein RECA, recombina 94.9 0.013 4.3E-07 59.9 3.2 40 214-255 60-99 (349)
260 3nh6_A ATP-binding cassette SU 94.9 0.013 4.4E-07 59.1 3.2 42 213-257 78-119 (306)
261 1nlf_A Regulatory protein REPA 94.9 0.013 4.4E-07 56.8 3.1 24 214-237 29-52 (279)
262 2www_A Methylmalonic aciduria 94.8 0.017 5.8E-07 58.7 4.0 40 214-255 73-112 (349)
263 3co5_A Putative two-component 94.8 0.0095 3.3E-07 52.3 1.9 33 218-256 30-62 (143)
264 2pt7_A CAG-ALFA; ATPase, prote 94.8 0.017 5.7E-07 58.5 3.9 34 216-252 172-205 (330)
265 2b8t_A Thymidine kinase; deoxy 94.8 0.017 5.9E-07 55.7 3.7 37 214-252 11-47 (223)
266 2oap_1 GSPE-2, type II secreti 94.7 0.018 6E-07 62.0 4.0 88 214-314 259-347 (511)
267 3fvq_A Fe(3+) IONS import ATP- 94.7 0.02 6.9E-07 59.1 4.1 41 213-256 28-68 (359)
268 2pjz_A Hypothetical protein ST 94.7 0.015 5.2E-07 57.2 3.0 38 215-256 30-67 (263)
269 2bbs_A Cystic fibrosis transme 94.6 0.016 5.4E-07 57.8 3.1 26 213-238 62-87 (290)
270 1ypw_A Transitional endoplasmi 94.6 0.058 2E-06 60.9 7.9 74 166-256 201-274 (806)
271 1sxj_B Activator 1 37 kDa subu 94.6 0.027 9.1E-07 54.3 4.5 24 214-238 42-65 (323)
272 2chq_A Replication factor C sm 94.5 0.019 6.6E-07 55.2 3.4 24 214-238 38-61 (319)
273 3qkt_A DNA double-strand break 94.5 0.02 6.8E-07 57.6 3.7 23 214-236 22-44 (339)
274 3tqf_A HPR(Ser) kinase; transf 94.5 0.022 7.6E-07 53.9 3.7 24 215-238 16-39 (181)
275 3tui_C Methionine import ATP-b 94.5 0.024 8.1E-07 58.8 4.2 41 213-256 52-92 (366)
276 2wjg_A FEOB, ferrous iron tran 94.5 0.027 9.3E-07 49.8 4.1 25 214-238 6-30 (188)
277 1um8_A ATP-dependent CLP prote 94.5 0.023 7.7E-07 57.4 4.0 37 215-256 72-108 (376)
278 1pui_A ENGB, probable GTP-bind 94.5 0.015 5.1E-07 52.7 2.3 27 212-238 23-49 (210)
279 1u94_A RECA protein, recombina 94.5 0.019 6.5E-07 58.9 3.4 40 214-255 62-101 (356)
280 3rlf_A Maltose/maltodextrin im 94.4 0.025 8.5E-07 58.9 4.2 41 213-256 27-67 (381)
281 1v5w_A DMC1, meiotic recombina 94.4 0.04 1.4E-06 55.7 5.6 56 197-255 107-166 (343)
282 2v9p_A Replication protein E1; 94.4 0.019 6.5E-07 58.0 3.2 26 213-238 124-149 (305)
283 1pzn_A RAD51, DNA repair and r 94.4 0.026 8.8E-07 57.4 4.1 59 195-256 114-176 (349)
284 2yyz_A Sugar ABC transporter, 94.4 0.026 9E-07 58.1 4.2 41 213-256 27-67 (359)
285 1qvr_A CLPB protein; coiled co 94.4 0.042 1.4E-06 62.0 6.2 42 216-259 589-630 (854)
286 2it1_A 362AA long hypothetical 94.4 0.027 9.1E-07 58.2 4.2 41 213-256 27-67 (362)
287 3hu3_A Transitional endoplasmi 94.4 0.03 1E-06 59.8 4.7 75 165-256 200-274 (489)
288 3qf7_A RAD50; ABC-ATPase, ATPa 94.3 0.023 7.9E-07 58.1 3.7 22 215-236 23-44 (365)
289 1z47_A CYSA, putative ABC-tran 94.3 0.027 9.2E-07 58.0 4.1 40 214-256 40-79 (355)
290 1oix_A RAS-related protein RAB 94.3 0.024 8.1E-07 51.4 3.3 25 215-239 29-53 (191)
291 2f9l_A RAB11B, member RAS onco 94.3 0.021 7.3E-07 51.7 3.0 25 215-239 5-29 (199)
292 2fn4_A P23, RAS-related protei 94.2 0.031 1.1E-06 48.6 3.8 28 212-239 6-33 (181)
293 2wji_A Ferrous iron transport 94.2 0.032 1.1E-06 49.0 3.8 24 215-238 3-26 (165)
294 2r2a_A Uncharacterized protein 94.2 0.037 1.3E-06 52.2 4.4 44 214-257 4-51 (199)
295 3d31_A Sulfate/molybdate ABC t 94.1 0.024 8.2E-07 58.2 3.3 41 213-256 24-64 (348)
296 1v43_A Sugar-binding transport 94.1 0.032 1.1E-06 57.8 4.2 41 213-256 35-75 (372)
297 2wsm_A Hydrogenase expression/ 94.1 0.036 1.2E-06 50.8 4.2 39 214-255 29-67 (221)
298 2qby_A CDC6 homolog 1, cell di 94.1 0.021 7E-07 56.1 2.7 42 213-256 43-87 (386)
299 1g41_A Heat shock protein HSLU 94.1 0.028 9.4E-07 59.7 3.8 38 215-257 50-87 (444)
300 3k1j_A LON protease, ATP-depen 94.1 0.036 1.2E-06 60.1 4.8 65 163-256 35-99 (604)
301 2r44_A Uncharacterized protein 94.1 0.039 1.3E-06 54.3 4.6 53 159-238 17-69 (331)
302 1g29_1 MALK, maltose transport 94.1 0.032 1.1E-06 57.7 4.1 40 214-256 28-67 (372)
303 1xx6_A Thymidine kinase; NESG, 94.1 0.038 1.3E-06 51.9 4.2 37 214-252 7-43 (191)
304 2z43_A DNA repair and recombin 94.1 0.029 1E-06 56.0 3.7 56 197-255 92-151 (324)
305 1nrj_B SR-beta, signal recogni 93.9 0.032 1.1E-06 50.9 3.4 27 213-239 10-36 (218)
306 2v1u_A Cell division control p 93.9 0.023 7.8E-07 56.0 2.5 42 213-256 42-89 (387)
307 3lda_A DNA repair protein RAD5 93.9 0.046 1.6E-06 57.0 4.9 59 194-255 160-222 (400)
308 1oxx_K GLCV, glucose, ABC tran 93.9 0.023 7.9E-07 58.3 2.6 41 213-256 29-69 (353)
309 2qby_B CDC6 homolog 3, cell di 93.8 0.03 1E-06 55.5 3.3 25 214-238 44-68 (384)
310 2qgz_A Helicase loader, putati 93.8 0.027 9.1E-07 56.2 2.9 40 215-256 152-192 (308)
311 1lw7_A Transcriptional regulat 93.8 0.029 1E-06 56.8 3.1 24 215-238 170-193 (365)
312 2f1r_A Molybdopterin-guanine d 93.8 0.016 5.5E-07 53.4 1.1 39 216-256 3-43 (171)
313 1xp8_A RECA protein, recombina 93.8 0.03 1E-06 57.7 3.2 41 214-256 73-113 (366)
314 1svi_A GTP-binding protein YSX 93.8 0.044 1.5E-06 48.7 3.9 26 213-238 21-46 (195)
315 2hf9_A Probable hydrogenase ni 93.8 0.046 1.6E-06 50.3 4.1 25 214-238 37-61 (226)
316 3ozx_A RNAse L inhibitor; ATP 93.8 0.037 1.3E-06 59.8 4.0 26 213-238 23-48 (538)
317 4ag6_A VIRB4 ATPase, type IV s 93.8 0.035 1.2E-06 56.5 3.6 36 217-254 37-72 (392)
318 2oil_A CATX-8, RAS-related pro 93.7 0.038 1.3E-06 49.3 3.5 27 213-239 23-49 (193)
319 2orv_A Thymidine kinase; TP4A 93.7 0.043 1.5E-06 53.8 4.1 41 210-252 14-54 (234)
320 1tue_A Replication protein E1; 93.7 0.023 7.8E-07 55.0 2.0 24 215-238 58-81 (212)
321 2lkc_A Translation initiation 93.7 0.048 1.6E-06 47.5 3.9 26 213-238 6-31 (178)
322 2ce2_X GTPase HRAS; signaling 93.7 0.042 1.5E-06 46.6 3.5 24 216-239 4-27 (166)
323 2z4s_A Chromosomal replication 93.6 0.021 7.3E-07 59.7 1.8 43 215-257 130-172 (440)
324 3pxi_A Negative regulator of g 93.6 0.074 2.5E-06 59.0 6.2 43 214-258 519-562 (758)
325 2h17_A ADP-ribosylation factor 93.6 0.037 1.3E-06 49.1 3.2 30 209-238 15-44 (181)
326 2yv5_A YJEQ protein; hydrolase 93.5 0.036 1.2E-06 55.1 3.2 23 215-238 165-187 (302)
327 1z2a_A RAS-related protein RAB 93.5 0.046 1.6E-06 46.9 3.5 25 214-238 4-28 (168)
328 2dyk_A GTP-binding protein; GT 93.5 0.039 1.3E-06 47.2 2.9 21 218-238 4-24 (161)
329 3b5x_A Lipid A export ATP-bind 93.5 0.055 1.9E-06 58.4 4.8 41 214-257 368-408 (582)
330 1kao_A RAP2A; GTP-binding prot 93.5 0.05 1.7E-06 46.3 3.6 25 215-239 3-27 (167)
331 3pvs_A Replication-associated 93.4 0.036 1.2E-06 58.4 3.1 23 216-238 51-73 (447)
332 3lxx_A GTPase IMAP family memb 93.4 0.047 1.6E-06 51.3 3.6 31 210-240 24-54 (239)
333 3m6a_A ATP-dependent protease 93.4 0.038 1.3E-06 59.5 3.2 38 214-256 107-144 (543)
334 1ky3_A GTP-binding protein YPT 93.3 0.05 1.7E-06 47.3 3.5 26 213-238 6-31 (182)
335 3bgw_A DNAB-like replicative h 93.3 0.067 2.3E-06 56.3 5.0 73 177-255 159-235 (444)
336 3auy_A DNA double-strand break 93.3 0.044 1.5E-06 55.8 3.4 23 214-236 24-46 (371)
337 2r6a_A DNAB helicase, replicat 93.3 0.095 3.3E-06 54.8 6.1 41 214-255 202-242 (454)
338 2qag_B Septin-6, protein NEDD5 93.3 0.038 1.3E-06 58.4 3.0 25 214-238 39-65 (427)
339 1ek0_A Protein (GTP-binding pr 93.3 0.045 1.5E-06 46.9 3.0 24 216-239 4-27 (170)
340 1e69_A Chromosome segregation 93.3 0.034 1.2E-06 55.4 2.5 22 215-236 24-45 (322)
341 1tf7_A KAIC; homohexamer, hexa 93.3 0.037 1.3E-06 59.0 2.9 41 214-255 38-78 (525)
342 1u8z_A RAS-related protein RAL 93.3 0.061 2.1E-06 45.9 3.8 25 215-239 4-28 (168)
343 2erx_A GTP-binding protein DI- 93.2 0.045 1.5E-06 47.0 3.0 24 215-238 3-26 (172)
344 4dzz_A Plasmid partitioning pr 93.2 0.044 1.5E-06 49.5 3.1 40 215-256 2-41 (206)
345 3kkq_A RAS-related protein M-R 93.2 0.062 2.1E-06 47.3 3.9 27 213-239 16-42 (183)
346 2ged_A SR-beta, signal recogni 93.2 0.051 1.8E-06 48.3 3.4 25 214-238 47-71 (193)
347 2gj8_A MNME, tRNA modification 93.2 0.055 1.9E-06 48.1 3.6 24 215-238 4-27 (172)
348 3tkl_A RAS-related protein RAB 93.2 0.053 1.8E-06 48.1 3.5 27 213-239 14-40 (196)
349 3b60_A Lipid A export ATP-bind 93.2 0.052 1.8E-06 58.7 4.0 41 214-257 368-408 (582)
350 3zq6_A Putative arsenical pump 93.2 0.067 2.3E-06 53.5 4.5 40 214-255 13-52 (324)
351 4a82_A Cystic fibrosis transme 93.1 0.041 1.4E-06 59.5 3.1 42 214-258 366-407 (578)
352 1z0j_A RAB-22, RAS-related pro 93.1 0.048 1.6E-06 46.9 3.0 25 215-239 6-30 (170)
353 3pqc_A Probable GTP-binding pr 93.1 0.068 2.3E-06 47.1 4.1 22 217-238 25-46 (195)
354 2bov_A RAla, RAS-related prote 93.1 0.061 2.1E-06 48.1 3.8 27 213-239 12-38 (206)
355 3con_A GTPase NRAS; structural 93.1 0.049 1.7E-06 48.4 3.1 25 214-238 20-44 (190)
356 2j9r_A Thymidine kinase; TK1, 93.1 0.072 2.5E-06 51.4 4.4 38 213-252 26-63 (214)
357 3gd7_A Fusion complex of cysti 93.1 0.046 1.6E-06 57.0 3.2 41 213-257 45-85 (390)
358 3clv_A RAB5 protein, putative; 93.1 0.076 2.6E-06 46.6 4.2 26 214-239 6-31 (208)
359 1yqt_A RNAse L inhibitor; ATP- 93.0 0.045 1.5E-06 59.0 3.2 26 213-238 45-70 (538)
360 1tq4_A IIGP1, interferon-induc 93.0 0.052 1.8E-06 57.0 3.5 24 214-237 68-91 (413)
361 1wms_A RAB-9, RAB9, RAS-relate 93.0 0.052 1.8E-06 47.2 3.0 25 214-238 6-30 (177)
362 1ojl_A Transcriptional regulat 93.0 0.051 1.8E-06 53.9 3.3 39 217-257 27-65 (304)
363 2nzj_A GTP-binding protein REM 93.0 0.069 2.4E-06 46.2 3.7 25 214-238 3-27 (175)
364 1w1w_A Structural maintenance 93.0 0.048 1.7E-06 56.4 3.2 24 214-237 25-48 (430)
365 4bas_A ADP-ribosylation factor 92.9 0.059 2E-06 47.9 3.3 28 212-239 14-41 (199)
366 3qf4_B Uncharacterized ABC tra 92.9 0.058 2E-06 58.6 3.9 42 214-258 380-421 (598)
367 3cf2_A TER ATPase, transitiona 92.9 0.099 3.4E-06 59.4 5.8 39 213-256 509-547 (806)
368 1upt_A ARL1, ADP-ribosylation 92.9 0.08 2.7E-06 45.6 4.1 25 214-238 6-30 (171)
369 2zej_A Dardarin, leucine-rich 92.9 0.05 1.7E-06 48.6 2.8 22 217-238 4-25 (184)
370 2hxs_A RAB-26, RAS-related pro 92.9 0.076 2.6E-06 46.2 3.9 25 214-238 5-29 (178)
371 3end_A Light-independent proto 92.9 0.058 2E-06 52.7 3.5 40 214-255 40-79 (307)
372 1z08_A RAS-related protein RAB 92.9 0.055 1.9E-06 46.6 2.9 25 214-238 5-29 (170)
373 1moz_A ARL1, ADP-ribosylation 92.9 0.055 1.9E-06 47.5 3.0 26 213-238 16-41 (183)
374 3iev_A GTP-binding protein ERA 92.9 0.057 1.9E-06 53.6 3.4 30 210-239 5-34 (308)
375 2rcn_A Probable GTPase ENGC; Y 92.8 0.052 1.8E-06 56.0 3.2 24 215-238 215-238 (358)
376 1c1y_A RAS-related protein RAP 92.8 0.071 2.4E-06 45.6 3.6 24 215-238 3-26 (167)
377 2yl4_A ATP-binding cassette SU 92.8 0.055 1.9E-06 58.6 3.5 41 214-257 369-409 (595)
378 3tw8_B RAS-related protein RAB 92.8 0.053 1.8E-06 47.1 2.8 25 214-238 8-32 (181)
379 3te6_A Regulatory protein SIR3 92.8 0.043 1.5E-06 55.7 2.4 46 213-258 43-93 (318)
380 3q72_A GTP-binding protein RAD 92.7 0.052 1.8E-06 46.7 2.7 21 218-238 5-25 (166)
381 2qu8_A Putative nucleolar GTP- 92.7 0.09 3.1E-06 48.8 4.4 27 213-239 27-53 (228)
382 1z6t_A APAF-1, apoptotic prote 92.7 0.19 6.7E-06 53.2 7.5 25 213-237 145-169 (591)
383 3ug7_A Arsenical pump-driving 92.7 0.074 2.5E-06 53.9 4.1 41 213-255 24-64 (349)
384 2xtp_A GTPase IMAP family memb 92.7 0.071 2.4E-06 50.6 3.7 28 212-239 19-46 (260)
385 2a9k_A RAS-related protein RAL 92.7 0.071 2.4E-06 46.5 3.5 26 214-239 17-42 (187)
386 2o5v_A DNA replication and rep 92.7 0.065 2.2E-06 55.1 3.7 22 215-236 26-47 (359)
387 3q85_A GTP-binding protein REM 92.7 0.064 2.2E-06 46.3 3.1 22 217-238 4-25 (169)
388 1u0l_A Probable GTPase ENGC; p 92.7 0.053 1.8E-06 53.7 2.9 23 216-238 170-192 (301)
389 2a5j_A RAS-related protein RAB 92.6 0.097 3.3E-06 46.8 4.4 25 215-239 21-45 (191)
390 2npi_A Protein CLP1; CLP1-PCF1 92.6 0.047 1.6E-06 58.0 2.6 24 215-238 138-161 (460)
391 1r2q_A RAS-related protein RAB 92.6 0.063 2.1E-06 46.0 3.0 24 215-238 6-29 (170)
392 4aby_A DNA repair protein RECN 92.6 0.021 7.4E-07 58.0 -0.0 19 217-235 62-80 (415)
393 3iqw_A Tail-anchored protein t 92.5 0.086 2.9E-06 53.5 4.3 39 214-254 15-53 (334)
394 1fzq_A ADP-ribosylation factor 92.5 0.081 2.8E-06 47.2 3.7 26 213-238 14-39 (181)
395 1r6b_X CLPA protein; AAA+, N-t 92.5 0.16 5.6E-06 56.0 6.9 38 216-258 489-526 (758)
396 3bc1_A RAS-related protein RAB 92.5 0.077 2.6E-06 46.5 3.5 25 214-238 10-34 (195)
397 1g16_A RAS-related protein SEC 92.5 0.075 2.6E-06 45.6 3.3 24 215-238 3-26 (170)
398 3szr_A Interferon-induced GTP- 92.5 0.097 3.3E-06 57.2 5.0 43 180-238 26-68 (608)
399 2fna_A Conserved hypothetical 92.5 0.074 2.5E-06 51.5 3.6 35 217-256 32-66 (357)
400 2cxx_A Probable GTP-binding pr 92.5 0.064 2.2E-06 47.2 2.9 22 218-239 4-25 (190)
401 4a1f_A DNAB helicase, replicat 92.5 0.058 2E-06 55.2 3.0 40 214-255 45-84 (338)
402 1yqt_A RNAse L inhibitor; ATP- 92.5 0.06 2E-06 58.1 3.2 25 214-238 311-335 (538)
403 3ihw_A Centg3; RAS, centaurin, 92.4 0.094 3.2E-06 47.1 3.9 28 212-239 17-44 (184)
404 3qf4_A ABC transporter, ATP-bi 92.3 0.076 2.6E-06 57.6 3.8 41 214-257 368-408 (587)
405 1z0f_A RAB14, member RAS oncog 92.3 0.082 2.8E-06 45.8 3.4 26 214-239 14-39 (179)
406 2y8e_A RAB-protein 6, GH09086P 92.3 0.069 2.3E-06 46.3 2.8 24 215-238 14-37 (179)
407 1tf7_A KAIC; homohexamer, hexa 92.3 0.075 2.6E-06 56.6 3.7 40 214-255 280-319 (525)
408 3oes_A GTPase rhebl1; small GT 92.3 0.079 2.7E-06 47.8 3.4 27 213-239 22-48 (201)
409 2il1_A RAB12; G-protein, GDP, 92.3 0.072 2.5E-06 47.9 3.0 25 214-238 25-49 (192)
410 2qen_A Walker-type ATPase; unk 92.3 0.072 2.5E-06 51.6 3.3 34 216-256 32-65 (350)
411 4dsu_A GTPase KRAS, isoform 2B 92.3 0.076 2.6E-06 46.5 3.1 25 215-239 4-28 (189)
412 1g8p_A Magnesium-chelatase 38 92.3 0.04 1.4E-06 54.0 1.4 21 218-238 48-68 (350)
413 3bk7_A ABC transporter ATP-bin 92.2 0.066 2.3E-06 58.7 3.2 25 214-238 381-405 (607)
414 1zd9_A ADP-ribosylation factor 92.2 0.082 2.8E-06 47.2 3.3 27 213-239 20-46 (188)
415 2qnr_A Septin-2, protein NEDD5 92.2 0.058 2E-06 53.6 2.4 22 217-238 20-41 (301)
416 3ea0_A ATPase, para family; al 92.1 0.12 4.1E-06 48.0 4.5 41 214-256 4-45 (245)
417 3t5g_A GTP-binding protein RHE 92.1 0.071 2.4E-06 46.8 2.7 25 214-238 5-29 (181)
418 2bme_A RAB4A, RAS-related prot 92.1 0.074 2.5E-06 46.8 2.9 26 214-239 9-34 (186)
419 2aka_B Dynamin-1; fusion prote 92.1 0.16 5.4E-06 48.8 5.4 23 217-239 28-50 (299)
420 3cbq_A GTP-binding protein REM 92.1 0.079 2.7E-06 48.2 3.1 26 212-237 20-45 (195)
421 2gf0_A GTP-binding protein DI- 92.1 0.1 3.6E-06 46.3 3.8 26 214-239 7-32 (199)
422 3ozx_A RNAse L inhibitor; ATP 92.1 0.067 2.3E-06 57.8 3.0 25 214-238 293-317 (538)
423 2efe_B Small GTP-binding prote 92.1 0.082 2.8E-06 46.1 3.1 26 214-239 11-36 (181)
424 3j16_B RLI1P; ribosome recycli 92.1 0.071 2.4E-06 58.6 3.2 26 213-238 101-126 (608)
425 2h57_A ADP-ribosylation factor 92.0 0.075 2.6E-06 47.3 2.8 27 212-238 18-44 (190)
426 1wb9_A DNA mismatch repair pro 92.0 0.071 2.4E-06 60.4 3.3 25 213-237 605-629 (800)
427 2ga8_A Hypothetical 39.9 kDa p 92.0 0.094 3.2E-06 54.4 3.9 37 370-406 291-327 (359)
428 2o52_A RAS-related protein RAB 92.0 0.083 2.8E-06 47.9 3.2 26 213-238 23-48 (200)
429 1ksh_A ARF-like protein 2; sma 92.0 0.1 3.6E-06 46.0 3.7 26 213-238 16-41 (186)
430 3bk7_A ABC transporter ATP-bin 92.0 0.07 2.4E-06 58.5 3.0 26 213-238 115-140 (607)
431 1knx_A Probable HPR(Ser) kinas 91.9 0.1 3.6E-06 53.0 4.1 25 214-238 146-170 (312)
432 3czp_A Putative polyphosphate 91.9 0.52 1.8E-05 50.7 9.6 160 213-420 41-204 (500)
433 2i1q_A DNA repair and recombin 91.9 0.081 2.8E-06 52.3 3.2 39 197-238 83-121 (322)
434 1r8s_A ADP-ribosylation factor 91.9 0.087 3E-06 45.2 3.0 21 218-238 3-23 (164)
435 1ko7_A HPR kinase/phosphatase; 91.9 0.097 3.3E-06 53.2 3.8 24 215-238 144-167 (314)
436 1mh1_A RAC1; GTP-binding, GTPa 91.9 0.087 3E-06 46.0 3.0 25 215-239 5-29 (186)
437 3e1s_A Exodeoxyribonuclease V, 91.8 0.081 2.8E-06 57.5 3.3 35 215-251 204-238 (574)
438 2woo_A ATPase GET3; tail-ancho 91.8 0.11 3.8E-06 52.2 4.0 40 214-255 18-57 (329)
439 2g6b_A RAS-related protein RAB 91.8 0.11 3.7E-06 45.3 3.5 26 214-239 9-34 (180)
440 1w4r_A Thymidine kinase; type 91.7 0.11 3.6E-06 49.6 3.6 47 205-254 11-57 (195)
441 3ch4_B Pmkase, phosphomevalona 91.7 0.11 3.9E-06 49.6 3.9 41 214-258 10-51 (202)
442 1z06_A RAS-related protein RAB 91.7 0.11 3.6E-06 46.3 3.4 27 213-239 18-44 (189)
443 2vhj_A Ntpase P4, P4; non- hyd 91.7 0.087 3E-06 54.1 3.2 34 215-253 123-156 (331)
444 1t9h_A YLOQ, probable GTPase E 91.7 0.037 1.3E-06 55.9 0.4 24 215-238 173-196 (307)
445 1h65_A Chloroplast outer envel 91.7 0.24 8.1E-06 47.7 6.2 26 214-239 38-63 (270)
446 1vg8_A RAS-related protein RAB 91.6 0.11 3.7E-06 46.6 3.5 26 214-239 7-32 (207)
447 3euj_A Chromosome partition pr 91.6 0.085 2.9E-06 56.6 3.2 22 216-237 30-51 (483)
448 2q6t_A DNAB replication FORK h 91.6 0.1 3.5E-06 54.4 3.7 40 214-254 199-238 (444)
449 1q57_A DNA primase/helicase; d 91.6 0.088 3E-06 55.6 3.2 52 198-255 229-281 (503)
450 1ewq_A DNA mismatch repair pro 91.6 0.082 2.8E-06 59.6 3.1 23 215-237 576-598 (765)
451 3j16_B RLI1P; ribosome recycli 91.5 0.087 3E-06 57.9 3.2 23 216-238 379-401 (608)
452 3czp_A Putative polyphosphate 91.5 1.6 5.3E-05 47.0 12.8 160 213-420 298-461 (500)
453 1g3q_A MIND ATPase, cell divis 91.5 0.12 4E-06 48.0 3.6 40 215-256 3-42 (237)
454 3io5_A Recombination and repai 91.5 0.072 2.5E-06 54.7 2.4 37 217-255 30-68 (333)
455 1x3s_A RAS-related protein RAB 91.5 0.099 3.4E-06 46.2 3.0 25 215-239 15-39 (195)
456 1zbd_A Rabphilin-3A; G protein 91.5 0.1 3.5E-06 46.9 3.1 25 215-239 8-32 (203)
457 3c5c_A RAS-like protein 12; GD 91.5 0.12 4E-06 46.4 3.5 27 213-239 19-45 (187)
458 3fkq_A NTRC-like two-domain pr 91.5 0.21 7.1E-06 50.8 5.7 39 214-254 143-181 (373)
459 2r8r_A Sensor protein; KDPD, P 91.4 0.14 4.9E-06 49.8 4.3 39 215-255 6-44 (228)
460 2hup_A RAS-related protein RAB 91.4 0.1 3.6E-06 47.4 3.1 28 212-239 26-53 (201)
461 1w5s_A Origin recognition comp 91.4 0.096 3.3E-06 52.3 3.1 25 214-238 49-75 (412)
462 2p5s_A RAS and EF-hand domain 91.4 0.12 4.2E-06 46.5 3.5 27 213-239 26-52 (199)
463 1dek_A Deoxynucleoside monopho 91.3 0.13 4.3E-06 50.3 3.8 36 216-258 2-38 (241)
464 1m7b_A RND3/RHOE small GTP-bin 91.3 0.12 4.1E-06 45.8 3.4 26 214-239 6-31 (184)
465 2f7s_A C25KG, RAS-related prot 91.3 0.12 4.3E-06 46.9 3.5 26 214-239 24-49 (217)
466 1a5t_A Delta prime, HOLB; zinc 91.3 0.11 3.6E-06 52.0 3.2 27 212-238 21-47 (334)
467 1zj6_A ADP-ribosylation factor 91.2 0.15 5.2E-06 45.2 3.9 25 214-238 15-39 (187)
468 3pxg_A Negative regulator of g 91.2 0.087 3E-06 55.5 2.7 21 218-238 204-224 (468)
469 1ihu_A Arsenical pump-driving 91.1 0.12 4E-06 55.7 3.6 41 213-255 6-46 (589)
470 3thx_A DNA mismatch repair pro 91.1 0.1 3.5E-06 60.1 3.3 22 214-235 661-682 (934)
471 3bwd_D RAC-like GTP-binding pr 91.1 0.13 4.4E-06 44.9 3.3 25 214-238 7-31 (182)
472 1f6b_A SAR1; gtpases, N-termin 91.1 0.12 4.3E-06 46.8 3.3 25 214-238 24-48 (198)
473 1hyq_A MIND, cell division inh 91.1 0.14 4.8E-06 48.4 3.7 40 215-256 3-42 (263)
474 3k53_A Ferrous iron transport 91.0 0.14 4.8E-06 49.3 3.8 23 216-238 4-26 (271)
475 2ph1_A Nucleotide-binding prot 91.0 0.16 5.4E-06 48.6 4.1 42 214-257 18-59 (262)
476 2qtf_A Protein HFLX, GTP-bindi 91.0 0.26 9E-06 50.5 6.0 22 217-238 181-202 (364)
477 3thx_B DNA mismatch repair pro 91.0 0.082 2.8E-06 60.8 2.4 24 213-236 671-694 (918)
478 2obl_A ESCN; ATPase, hydrolase 91.0 0.11 3.7E-06 53.1 3.1 25 214-238 70-94 (347)
479 2fg5_A RAB-22B, RAS-related pr 91.0 0.12 4E-06 46.4 2.9 26 214-239 22-47 (192)
480 3q9l_A Septum site-determining 91.0 0.14 4.6E-06 48.1 3.5 40 215-256 3-42 (260)
481 2bcg_Y Protein YP2, GTP-bindin 90.9 0.11 3.9E-06 46.8 2.8 26 214-239 7-32 (206)
482 1cp2_A CP2, nitrogenase iron p 90.9 0.15 5.1E-06 48.4 3.7 38 217-256 3-40 (269)
483 1gwn_A RHO-related GTP-binding 90.9 0.14 4.6E-06 47.2 3.4 26 214-239 27-52 (205)
484 3kjh_A CO dehydrogenase/acetyl 90.9 0.1 3.6E-06 48.1 2.6 35 219-255 4-38 (254)
485 3lxw_A GTPase IMAP family memb 90.9 0.14 4.9E-06 48.9 3.6 27 213-239 19-45 (247)
486 1r6b_X CLPA protein; AAA+, N-t 90.9 0.17 5.7E-06 56.0 4.6 24 215-238 207-230 (758)
487 3cph_A RAS-related protein SEC 90.9 0.15 5.1E-06 45.9 3.5 27 213-239 18-44 (213)
488 1m2o_B GTP-binding protein SAR 90.9 0.12 4E-06 46.6 2.9 24 215-238 23-46 (190)
489 3k9g_A PF-32 protein; ssgcid, 90.8 0.14 4.7E-06 48.8 3.4 40 214-256 27-66 (267)
490 2j1l_A RHO-related GTP-binding 90.8 0.15 5.1E-06 46.8 3.5 26 213-238 32-57 (214)
491 3la6_A Tyrosine-protein kinase 90.8 0.19 6.5E-06 49.7 4.5 42 214-257 92-133 (286)
492 2gf9_A RAS-related protein RAB 90.8 0.17 5.7E-06 45.0 3.7 25 215-239 22-46 (189)
493 4dhe_A Probable GTP-binding pr 90.7 0.088 3E-06 48.0 1.9 25 214-238 28-52 (223)
494 2qag_C Septin-7; cell cycle, c 90.7 0.11 3.7E-06 54.6 2.8 22 218-239 34-55 (418)
495 1ega_A Protein (GTP-binding pr 90.7 0.13 4.5E-06 50.8 3.3 25 214-238 7-31 (301)
496 3io3_A DEHA2D07832P; chaperone 90.7 0.16 5.4E-06 51.9 4.0 39 214-254 17-57 (348)
497 3dz8_A RAS-related protein RAB 90.6 0.13 4.3E-06 46.0 2.8 24 215-238 23-46 (191)
498 2q3h_A RAS homolog gene family 90.6 0.17 5.7E-06 45.4 3.6 26 213-238 18-43 (201)
499 1qhl_A Protein (cell division 90.5 0.051 1.7E-06 52.5 0.1 22 217-238 29-50 (227)
500 3t1o_A Gliding protein MGLA; G 90.5 0.14 4.7E-06 45.1 3.0 24 215-238 14-37 (198)
No 1
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=99.83 E-value=2.5e-19 Score=178.48 Aligned_cols=170 Identities=22% Similarity=0.294 Sum_probs=132.7
Q ss_pred CCCCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccccchhhhhhhhcc-ccCchhhHHHHHhHhHHHHH
Q 044777 211 GDRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKESDVIYRALSSR-SHVDMLQTAELVHQSSTDAA 289 (513)
Q Consensus 211 ~~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~~~p~y~~l~~~-G~~Dp~qaae~v~~eAtrlA 289 (513)
+..+|.+|+|+|+|||||||+++.|++. + ..+.++|++|.+|..++.+..+... +.+ +.+......+.+.
T Consensus 29 ~~~~~~livl~G~sGsGKSTla~~L~~~--~---~~~~~~Is~D~~R~~~~~~~~~~~~~~~~----a~~~~~~~~~~~~ 99 (287)
T 1gvn_B 29 AVESPTAFLLGGQPGSGKTSLRSAIFEE--T---QGNVIVIDNDTFKQQHPNFDELVKLYEKD----VVKHVTPYSNRMT 99 (287)
T ss_dssp CCSSCEEEEEECCTTSCTHHHHHHHHHH--T---TTCCEEECTHHHHTTSTTHHHHHHHHGGG----CHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH--h---CCCeEEEechHhHHhchhhHHHHHHccch----hhhhhhHHHHHHH
Confidence 4567999999999999999999999876 1 2367899999999887776543321 111 1123333344556
Q ss_pred HHHHHHHHHCCCcEEEECcCCChHHHHHHHHHHhhhhhcccccccccccccCCccccchhhhhhhhhhhhcccCCCCeEE
Q 044777 290 SSLLVTALNEGRDVIMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENYWDRIGEREQAQDGKMRKPYRI 369 (513)
Q Consensus 290 ~~li~~aL~~GrsVIlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Yw~~v~~a~~~~~~~~~~gYrI 369 (513)
...+..++++|.+||+|+|+.+..++.++.+.+ +..||.+
T Consensus 100 ~~~v~~~l~~g~~vIld~~~~~~~~~~~~~~~~----------------------------------------~~~g~~~ 139 (287)
T 1gvn_B 100 EAIISRLSDQGYNLVIEGTGRTTDVPIQTATML----------------------------------------QAKGYET 139 (287)
T ss_dssp HHHHHHHHHHTCCEEECCCCCCSHHHHHHHHHH----------------------------------------HTTTCEE
T ss_pred HHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHH----------------------------------------HhCCCcE
Confidence 677888899999999999999988777666644 3468888
Q ss_pred EEEEEecChHHH----HHHHHHHHHhcC---CcCchhHHHHHHHHHHHHHHHh--hcccceEEEEecCC
Q 044777 370 ELVGVVCDAYLA----VVRGIRRAIMCR---RAVRVKSQLKSHKRFANAFLTY--CQLVDSARLYSTNA 429 (513)
Q Consensus 370 ~Lv~V~~dpelA----v~Rv~~Rv~~gG---h~VP~~~il~r~~rf~~nf~~~--~~lvD~a~lyDNs~ 429 (513)
.++++.+||+++ +.|...|+..|| |.+|.+.+...++++..++... ...+|.+++||+..
T Consensus 140 ~~i~~~~p~~~~~l~~~~Rl~~R~~~g~l~~R~~~~e~~~~i~~rl~~a~~el~~~~~~d~v~v~d~~g 208 (287)
T 1gvn_B 140 KMYVMAVPKINSYLGTIERYETMYADDPMTARATPKQAHDIVVKNLPTNLETLHKTGLFSDIRLYNREG 208 (287)
T ss_dssp EEEEECCCHHHHHHHHHHHHHHHHHHCTTTCCCCCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEECTTC
T ss_pred EEEEEECCHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEeCCC
Confidence 888889999999 889888888754 8999999999999999887754 57899999999864
No 2
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=99.67 E-value=2.2e-15 Score=146.14 Aligned_cols=170 Identities=21% Similarity=0.318 Sum_probs=114.3
Q ss_pred CCCCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccccchhhhhhhhccccCchhhHHHHHhHhHHHHHH
Q 044777 211 GDRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKESDVIYRALSSRSHVDMLQTAELVHQSSTDAAS 290 (513)
Q Consensus 211 ~~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~~~p~y~~l~~~G~~Dp~qaae~v~~eAtrlA~ 290 (513)
+..+|.+|++.|+|||||||+++.|.... +.+.+++++|.+|..++.+..+....... ..++....+++++.
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l-----~~~~~~~~~D~~r~~~~~~~~i~~~~g~~---~~~~~~~~~~~~~~ 99 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEF-----QGNIVIIDGDSFRSQHPHYLELQQEYGKD---SVEYTKDFAGKMVE 99 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHT-----TTCCEEECGGGGGTTSTTHHHHHTTCSST---THHHHHHHHHHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhc-----CCCcEEEecHHHHHhchhHHHHHHHcCch---HHHHhhHHHHHHHH
Confidence 45678999999999999999999998861 24578999999998877665444321111 12333333455666
Q ss_pred HHHHHHHHCCCcEEEECcCCChHHHHHHHHHHhhhhhcccccccccccccCCccccchhhhhhhhhhhhcccCCCCeEEE
Q 044777 291 SLLVTALNEGRDVIMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENYWDRIGEREQAQDGKMRKPYRIE 370 (513)
Q Consensus 291 ~li~~aL~~GrsVIlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Yw~~v~~a~~~~~~~~~~gYrI~ 370 (513)
.++..+++.|.+||+|+++++......+.+.+ +..||.|.
T Consensus 100 ~~~~~~~~~g~~vVid~~~~~~~~~~~~~~~l----------------------------------------~~~g~~v~ 139 (253)
T 2p5t_B 100 SLVTKLSSLGYNLLIEGTLRTVDVPKKTAQLL----------------------------------------KNKGYEVQ 139 (253)
T ss_dssp HHHHHHHHTTCCEEEECCTTSSHHHHHHHHHH----------------------------------------HHTTCEEE
T ss_pred HHHHHHHhcCCCEEEeCCCCCHHHHHHHHHHH----------------------------------------HHCCCcEE
Confidence 77788888999999999999877766665544 33688889
Q ss_pred EEEEecChHHHHHHHHHHHHh-------cCCcCchhHHHHHHHHHHHHHHH--hhcccceEEEEecC
Q 044777 371 LVGVVCDAYLAVVRGIRRAIM-------CRRAVRVKSQLKSHKRFANAFLT--YCQLVDSARLYSTN 428 (513)
Q Consensus 371 Lv~V~~dpelAv~Rv~~Rv~~-------gGh~VP~~~il~r~~rf~~nf~~--~~~lvD~a~lyDNs 428 (513)
++++.+|++++..|...|... .|+.+|.+.....+..+.-+... .-..+|.+..|..+
T Consensus 140 lv~l~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~t~~~~~~~~~~~I~~~l~~ 206 (253)
T 2p5t_B 140 LALIATKPELSYLSTLIRYEELYIINPNQARATPKEHHDFIVNHLVDNTRKLEELAIFERIQIYQRD 206 (253)
T ss_dssp EEEECCCHHHHHHHHHHHHHHTTTSCSCC-------CCCTTHHHHHHHHHHHHHTTCCSEEEEECTT
T ss_pred EEEEeCCHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhHHHHHHHHhhccCCCeEEEEeCC
Confidence 999999999999999999764 24455544333333334333332 34567777766543
No 3
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=99.51 E-value=8.5e-14 Score=124.86 Aligned_cols=141 Identities=16% Similarity=0.096 Sum_probs=98.9
Q ss_pred CcEEEEEecCCCCchHHHHHHHhc-CcccccCCCCeEEecccccccchhhh-hhhhccccCchhhHHHHHhHhHHHHHHH
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILK-EPFWAGAAGNAVVIEADAFKESDVIY-RALSSRSHVDMLQTAELVHQSSTDAASS 291 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~-~~f~~~~~~~aVvInaDefR~~~p~y-~~l~~~G~~Dp~qaae~v~~eAtrlA~~ 291 (513)
+|.+|+|.|+|||||||+++.|.+ . .++.+|+.|.+|...... .+.. ..++. +... ........
T Consensus 1 M~~~I~i~G~~GsGKST~a~~L~~~~-------~~~~~i~~d~~r~~~~~~~~~~~--~~~~~-~~~~----~~~~~~~~ 66 (181)
T 1ly1_A 1 MKKIILTIGCPGSGKSTWAREFIAKN-------PGFYNINRDDYRQSIMAHEERDE--YKYTK-KKEG----IVTGMQFD 66 (181)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHS-------TTEEEECHHHHHHHHTTSCCGGG--CCCCH-HHHH----HHHHHHHH
T ss_pred CCeEEEEecCCCCCHHHHHHHHHhhc-------CCcEEecHHHHHHHhhCCCccch--hhhch-hhhh----HHHHHHHH
Confidence 478999999999999999999998 4 578899999998643210 0000 01211 0001 11233445
Q ss_pred HHHHHH---HCCCcEEEECcCCChHHHHHHHHHHhhhhhcccccccccccccCCccccchhhhhhhhhhhhcccCCCCeE
Q 044777 292 LLVTAL---NEGRDVIMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENYWDRIGEREQAQDGKMRKPYR 368 (513)
Q Consensus 292 li~~aL---~~GrsVIlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Yw~~v~~a~~~~~~~~~~gYr 368 (513)
++..++ ..|.+||+|+++.+..++..+.+.++ ..|+.
T Consensus 67 ~~~~~l~~~~~g~~vi~d~~~~~~~~~~~l~~~~~----------------------------------------~~~~~ 106 (181)
T 1ly1_A 67 TAKSILYGGDSVKGVIISDTNLNPERRLAWETFAK----------------------------------------EYGWK 106 (181)
T ss_dssp HHHHHHTSCSSCCEEEECSCCCSHHHHHHHHHHHH----------------------------------------HHTCE
T ss_pred HHHHHHhhccCCCeEEEeCCCCCHHHHHHHHHHHH----------------------------------------HcCCC
Confidence 677788 88999999999988777665554432 23556
Q ss_pred EEEEEEecChHHHHHHHHHHHHhcCCcCchhHHHHHHHHHHHH
Q 044777 369 IELVGVVCDAYLAVVRGIRRAIMCRRAVRVKSQLKSHKRFANA 411 (513)
Q Consensus 369 I~Lv~V~~dpelAv~Rv~~Rv~~gGh~VP~~~il~r~~rf~~n 411 (513)
+.++++.+|++++++|...|. +|.+|.+.+.+++..+...
T Consensus 107 ~~~i~l~~~~~~~~~R~~~R~---~~~~~~~~i~~~~~~~~~~ 146 (181)
T 1ly1_A 107 VEHKVFDVPWTELVKRNSKRG---TKAVPIDVLRSMYKSMREY 146 (181)
T ss_dssp EEEEECCCCHHHHHHHHTTCG---GGCCCHHHHHHHHHHHHHH
T ss_pred EEEEEEeCCHHHHHHHHhccc---cCCCCHHHHHHHHHHhhcc
Confidence 667888899999999998873 4788998888888777654
No 4
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=99.40 E-value=1.9e-12 Score=126.80 Aligned_cols=140 Identities=17% Similarity=0.101 Sum_probs=100.4
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccccchhhhhhhhccc---cCchhhHHHHHhHhHHHHHH
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKESDVIYRALSSRS---HVDMLQTAELVHQSSTDAAS 290 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~~~p~y~~l~~~G---~~Dp~qaae~v~~eAtrlA~ 290 (513)
+|.+|+|.|+|||||||+++.|.+. ..++.+|+.|.+|+.... ... | .++. . .+. .......
T Consensus 1 M~~~I~l~G~~GsGKST~a~~L~~~------~~~~~~i~~D~~r~~~~~---~~~-g~~~~~~~-~-~~~---~~~~~~~ 65 (301)
T 1ltq_A 1 MKKIILTIGCPGSGKSTWAREFIAK------NPGFYNINRDDYRQSIMA---HEE-RDEYKYTK-K-KEG---IVTGMQF 65 (301)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH------STTEEEECHHHHHHHHTT---SCC-CC---CCH-H-HHH---HHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh------CCCcEEecccHHHHHhcc---CCc-ccccccch-h-hhh---HHHHHHH
Confidence 4789999999999999999999874 147789999999764321 000 1 1211 0 010 1113334
Q ss_pred HHHHHHH---HCCCcEEEECcCCChHHHHHHHHHHhhhhhcccccccccccccCCccccchhhhhhhhhhhhcccCCCCe
Q 044777 291 SLLVTAL---NEGRDVIMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENYWDRIGEREQAQDGKMRKPY 367 (513)
Q Consensus 291 ~li~~aL---~~GrsVIlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Yw~~v~~a~~~~~~~~~~gY 367 (513)
.++..++ ..|.+||+|+++....++..+.+++ +..|+
T Consensus 66 ~~~~~~l~~~~~g~~vi~d~~~~~~~~~~~l~~~~----------------------------------------~~~~~ 105 (301)
T 1ltq_A 66 DTAKSILYGGDSVKGVIISDTNLNPERRLAWETFA----------------------------------------KEYGW 105 (301)
T ss_dssp HHHHHHTTSCTTCCEEEECSCCCCHHHHHHHHHHH----------------------------------------HHTTC
T ss_pred HHHHHHHhhccCCCEEEEeCCCCCHHHHHHHHHHH----------------------------------------HHcCC
Confidence 5567788 8899999999998887766665544 22466
Q ss_pred EEEEEEEecChHHHHHHHHHHHHhcCCcCchhHHHHHHHHHHHH
Q 044777 368 RIELVGVVCDAYLAVVRGIRRAIMCRRAVRVKSQLKSHKRFANA 411 (513)
Q Consensus 368 rI~Lv~V~~dpelAv~Rv~~Rv~~gGh~VP~~~il~r~~rf~~n 411 (513)
.+.++++.+|++++++|...|. +|.+|.+.+.+++.++...
T Consensus 106 ~~~~i~l~~~~e~~~~R~~~R~---~~~~~~e~i~~~~~~~~~~ 146 (301)
T 1ltq_A 106 KVEHKVFDVPWTELVKRNSKRG---TKAVPIDVLRSMYKSMREY 146 (301)
T ss_dssp EEEEEECCCCHHHHHHHHHHCG---GGCCCHHHHHHHHHHHHHH
T ss_pred cEEEEEEECCHHHHHHHHHhcc---CCCCCHHHHHHHHHHHhcc
Confidence 7778888899999999999873 5899999999888877654
No 5
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=99.36 E-value=3.8e-12 Score=132.79 Aligned_cols=119 Identities=21% Similarity=0.207 Sum_probs=92.1
Q ss_pred CCCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccccchhhhhhhhccccCchhhHHHHHhHhHHHHHHH
Q 044777 212 DRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKESDVIYRALSSRSHVDMLQTAELVHQSSTDAASS 291 (513)
Q Consensus 212 ~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~~~p~y~~l~~~G~~Dp~qaae~v~~eAtrlA~~ 291 (513)
..+|.+|+|+|+|||||||+++.|++. .++++|+.|.++. |. ....
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~-------~~~~~i~~D~~~~----~~-----------------------~~~~ 300 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVS-------AGYVHVNRDTLGS----WQ-----------------------RCVS 300 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGG-------GTCEECCGGGSCS----HH-----------------------HHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHh-------cCcEEEccchHHH----HH-----------------------HHHH
Confidence 456899999999999999999999886 4788999999831 10 1123
Q ss_pred HHHHHHHCCCcEEEECcCCChHHHHHHHHHHhhhhhcccccccccccccCCccccchhhhhhhhhhhhcccCCCCeEEEE
Q 044777 292 LLVTALNEGRDVIMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENYWDRIGEREQAQDGKMRKPYRIEL 371 (513)
Q Consensus 292 li~~aL~~GrsVIlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Yw~~v~~a~~~~~~~~~~gYrI~L 371 (513)
.+..++.+|.+||+|+|+.....+..+.++++. .|+.+.+
T Consensus 301 ~~~~~l~~g~~vIiD~~~~~~~~r~~~~~~~~~----------------------------------------~~~~~~~ 340 (416)
T 3zvl_A 301 SCQAALRQGKRVVIDNTNPDVPSRARYIQCAKD----------------------------------------AGVPCRC 340 (416)
T ss_dssp HHHHHHHTTCCEEEESCCCSHHHHHHHHHHHHH----------------------------------------HTCCEEE
T ss_pred HHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHH----------------------------------------cCCeEEE
Confidence 456778899999999999998888777665532 3556778
Q ss_pred EEEecChHHHHHHHHHHHHhcCC--cCchhHHHHH
Q 044777 372 VGVVCDAYLAVVRGIRRAIMCRR--AVRVKSQLKS 404 (513)
Q Consensus 372 v~V~~dpelAv~Rv~~Rv~~gGh--~VP~~~il~r 404 (513)
+++.++++++++|...|...+++ .+|.+.+.+.
T Consensus 341 v~l~~~~e~l~~R~~~R~~~~~~~~~~~~~~~~~~ 375 (416)
T 3zvl_A 341 FNFCATIEQARHNNRFREMTDPSHAPVSDMVMFSY 375 (416)
T ss_dssp EEECCCHHHHHHHHHHHHHHCTTCCCCCHHHHHHH
T ss_pred EEEeCCHHHHHHHHHhhcccCCCcCCCCHHHHHHH
Confidence 88899999999999999887665 4565555433
No 6
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=99.32 E-value=1.2e-11 Score=112.45 Aligned_cols=129 Identities=19% Similarity=0.209 Sum_probs=81.0
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccccchhhhhhhhccccCchhhHHHHHhHhHHHHHHHH
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKESDVIYRALSSRSHVDMLQTAELVHQSSTDAASSL 292 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~~~p~y~~l~~~G~~Dp~qaae~v~~eAtrlA~~l 292 (513)
.+|.+|+|.|+|||||||+++.|.+. .+..+++.|.+++.+.. ... ..+ ..................
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~-------l~~~~i~~D~~~~~~~~--~~~---~~~-~~~~~~~~~~~~~~~~~~ 69 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATG-------LRLPLLSKDAFKEVMFD--GLG---WSD-REWSRRVGATAIMMLYHT 69 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHH-------HTCCEEEHHHHHHHHHH--HHC---CCS-HHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH-------cCCeEecHHHHHHHHHH--hcC---ccc-hHHHHHhhHHHHHHHHHH
Confidence 36889999999999999999999886 25668999999754321 111 011 111111111112333345
Q ss_pred HHHHHHCCCcEEEECcCCChHHHHHHHHHHhhhhhcccccccccccccCCccccchhhhhhhhhhhhcccCCCCeEEEEE
Q 044777 293 LVTALNEGRDVIMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENYWDRIGEREQAQDGKMRKPYRIELV 372 (513)
Q Consensus 293 i~~aL~~GrsVIlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Yw~~v~~a~~~~~~~~~~gYrI~Lv 372 (513)
+..+++.|.+||+|++++.......+.+++ ...++...++
T Consensus 70 ~~~~l~~g~~vi~d~~~~~~~~~~~~~~l~----------------------------------------~~~~~~~~~v 109 (193)
T 2rhm_A 70 AATILQSGQSLIMESNFRVDLDTERMQNLH----------------------------------------TIAPFTPIQI 109 (193)
T ss_dssp HHHHHHTTCCEEEEECCCHHHHHHHHHHHH----------------------------------------HHSCCEEEEE
T ss_pred HHHHHhCCCeEEEecCCCCHHHHHHHHHHH----------------------------------------HhcCCeEEEE
Confidence 667788999999999983221212221111 1123455678
Q ss_pred EEecChHHHHHHHHHHHHhcCC
Q 044777 373 GVVCDAYLAVVRGIRRAIMCRR 394 (513)
Q Consensus 373 ~V~~dpelAv~Rv~~Rv~~gGh 394 (513)
++.+|++++.+|...|...+.|
T Consensus 110 ~l~~~~e~~~~R~~~R~~~~~r 131 (193)
T 2rhm_A 110 RCVASGDVLVERILSRIAQGAR 131 (193)
T ss_dssp EEECCHHHHHHHHHHHHHTTCC
T ss_pred EEeCCHHHHHHHHHHhcCcccc
Confidence 8889999999999999765444
No 7
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=99.26 E-value=3.1e-11 Score=117.56 Aligned_cols=133 Identities=20% Similarity=0.241 Sum_probs=88.7
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccccchhhhhhhhccccCchhhHHHHHhHhHHHHHHHHH
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKESDVIYRALSSRSHVDMLQTAELVHQSSTDAASSLL 293 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~~~p~y~~l~~~G~~Dp~qaae~v~~eAtrlA~~li 293 (513)
+|.+|+|+|+|||||||+++.|.+. +...+..+++++.|.++.....|. .. .+. .........+
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~--L~~~g~~~i~~~~D~~~~~l~~~~---~~--------~e~---~~~~~~~~~i 66 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI--LSKNNIDVIVLGSDLIRESFPVWK---EK--------YEE---FIKKSTYRLI 66 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH--HHHTTCCEEEECTHHHHTTSSSCC---GG--------GHH---HHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH--HHhCCCEEEEECchHHHHHHhhhh---HH--------HHH---HHHHHHHHHH
Confidence 4679999999999999999999874 111123444569999976443221 10 010 0111223445
Q ss_pred HHHHHCCCcEEEECcCCChHHHHHHHHHHhhhhhcccccccccccccCCccccchhhhhhhhhhhhcccCCCCeEEEEEE
Q 044777 294 VTALNEGRDVIMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENYWDRIGEREQAQDGKMRKPYRIELVG 373 (513)
Q Consensus 294 ~~aL~~GrsVIlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Yw~~v~~a~~~~~~~~~~gYrI~Lv~ 373 (513)
..+++. ..||+|+++..+.++..+...++ ..|+...+++
T Consensus 67 ~~~l~~-~~vIiD~~~~~~~~~~~l~~~a~----------------------------------------~~~~~~~vi~ 105 (260)
T 3a4m_A 67 DSALKN-YWVIVDDTNYYNSMRRDLINIAK----------------------------------------KYNKNYAIIY 105 (260)
T ss_dssp HHHHTT-SEEEECSCCCSHHHHHHHHHHHH----------------------------------------HTTCEEEEEE
T ss_pred HHHhhC-CEEEEeCCcccHHHHHHHHHHHH----------------------------------------HcCCCEEEEE
Confidence 667776 89999999988877766655442 2455567788
Q ss_pred EecChHHHHHHHHHHHHhcCCcCchhHHHHHHHH
Q 044777 374 VVCDAYLAVVRGIRRAIMCRRAVRVKSQLKSHKR 407 (513)
Q Consensus 374 V~~dpelAv~Rv~~Rv~~gGh~VP~~~il~r~~r 407 (513)
+.||++.+.+|...| ||.+|.+.+.+.+.+
T Consensus 106 l~~~~e~~~~R~~~R----~~~~~~~~l~~~~~~ 135 (260)
T 3a4m_A 106 LKASLDVLIRRNIER----GEKIPNEVIKKMYEK 135 (260)
T ss_dssp EECCHHHHHHHHHHT----TCSSCHHHHHHHHHH
T ss_pred EeCCHHHHHHHHHhC----CCCCCHHHHHHHHHH
Confidence 899999999999887 577877666554443
No 8
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=99.21 E-value=7.7e-10 Score=99.97 Aligned_cols=163 Identities=15% Similarity=0.143 Sum_probs=92.1
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccccc-h-h---hhh----hhhccccCchhhHHHHHhHh
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKES-D-V---IYR----ALSSRSHVDMLQTAELVHQS 284 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~~-~-p---~y~----~l~~~G~~Dp~qaae~v~~e 284 (513)
+|.+|++.|+|||||||+++.|++. .+..+|+.|.+-.. . + .+. .....|...+. +..+..
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~-------~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~ 71 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEK-------YGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPV---EITISL 71 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHH-------HCCEEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCH---HHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH-------hCCeEEeHHHHHHHHHhccCChHHHHHHHHHHCCCcCCH---HHHHHH
Confidence 5889999999999999999999886 35678999877321 1 1 000 00111111110 111110
Q ss_pred HHHHHHHHHHHHHHCCCcEEEECcCCChHHHHHHHHHHhhhhhcccccccccccccCCccccchhhhhhhhhhhhcccCC
Q 044777 285 STDAASSLLVTALNEGRDVIMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENYWDRIGEREQAQDGKMR 364 (513)
Q Consensus 285 AtrlA~~li~~aL~~GrsVIlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Yw~~v~~a~~~~~~~~~ 364 (513)
-....... ..++..+..||+|++......+..+...+ ..
T Consensus 72 l~~~~~~~-~~~~~~~~~vi~dg~~~~~~~~~~~~~~~----------------------------------------~~ 110 (196)
T 1tev_A 72 LKREMDQT-MAANAQKNKFLIDGFPRNQDNLQGWNKTM----------------------------------------DG 110 (196)
T ss_dssp HHHHHHHH-HHHCTTCCEEEEESCCCSHHHHHHHHHHH----------------------------------------TT
T ss_pred HHHHHHhh-hccccCCCeEEEeCCCCCHHHHHHHHHHh----------------------------------------cc
Confidence 11111111 12334688999999988765544332211 00
Q ss_pred CCeEEEEEEEecChHHHHHHHHHHHHhcCCc-CchhHHHHHHHHHHHHHHH----hhcccceEEEEecC
Q 044777 365 KPYRIELVGVVCDAYLAVVRGIRRAIMCRRA-VRVKSQLKSHKRFANAFLT----YCQLVDSARLYSTN 428 (513)
Q Consensus 365 ~gYrI~Lv~V~~dpelAv~Rv~~Rv~~gGh~-VP~~~il~r~~rf~~nf~~----~~~lvD~a~lyDNs 428 (513)
.+.--.++++.+|++++++|...|....+|. ...+.+.+++..+.....+ |.... .+.+.||+
T Consensus 111 ~~~~~~~i~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~-~~~~id~~ 178 (196)
T 1tev_A 111 KADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMG-KVKKIDAS 178 (196)
T ss_dssp TCEEEEEEEEECCHHHHHHHHHHHHHTSSCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTT-CEEEEETT
T ss_pred cCCCCEEEEEECCHHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHHhHHHHHHHHHhcC-CEEEEECC
Confidence 1111135777899999999999997665554 4556666666666665443 33333 35566776
No 9
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.18 E-value=1.5e-10 Score=124.59 Aligned_cols=139 Identities=14% Similarity=0.297 Sum_probs=98.3
Q ss_pred HHHHHHHHHHhhccCccchhhhhhcCCCCcchHHHHHHHHHHHHhhhhhhhccchhhHHHHHhhcCCCchhhhhHHHHHH
Q 044777 82 QLCKLAAEYIRKSEGCEDDIYTFFSSEPAADSLFIKLVEEFERCILSYFAFHWSHADLMISQVLNSDAEPKKKLKHIVMQ 161 (513)
Q Consensus 82 ~~~~l~~~~l~~s~~~~~~i~~~~~~~~~~~~l~~~~~eele~~~~~~~~~~~~~~~~li~~~l~~~~~~~~~~~~~v~~ 161 (513)
-+.||..++-++.+++.++|.++|++.+ |+..+++||++ .||.+++|.+.. ..+++
T Consensus 195 ~~~~l~~~l~kt~~~l~~~l~~~~~~~~----ide~~l~el~~--------------~Ll~aDv~~~~~------~~l~~ 250 (503)
T 2yhs_A 195 FFARLKRSLLKTKENLGSGFISLFRGKK----IDDDLFEELEE--------------QLLIADVGVETT------RKIIT 250 (503)
T ss_dssp HHHHHHHHTHHHHTTSTTHHHHHHTTCB----CSHHHHHHHHH--------------HHHHTTCCHHHH------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCC----CCHHHHHHHHH--------------HHHHcCCCHHHH------HHHHH
Confidence 3578999999999999999999998877 44566799999 999999997777 77788
Q ss_pred HHHhHHH-HhhhhhhHHHHHHHHHHHHHHHhcCCCCCCcccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcCcc
Q 044777 162 ATREQRF-ERVTKNLKVARVFTTLVEEMKAMGLAPNDDSQCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKEPF 240 (513)
Q Consensus 162 a~r~~rf-~r~~~~~~v~r~~~~~ve~~~~~~~~~~~~~~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~~f 240 (513)
.+|+.-. +.+.....+...+.+.+.++..-. -.++.-.-..|.++.|.|+|||||||+++.|+..
T Consensus 251 ~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~------------~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgl-- 316 (503)
T 2yhs_A 251 NLTEGASRKQLRDAEALYGLLKEEMGEILAKV------------DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQ-- 316 (503)
T ss_dssp HHHHHHHHHTCCBGGGHHHHHHHHHHHHHHTT------------BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHH--
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHhCCC------------CCCceeeccCCeEEEEECCCcccHHHHHHHHHHH--
Confidence 8877522 334445556666666663332211 0111112357899999999999999999999864
Q ss_pred cccCCCCeEEeccccccc
Q 044777 241 WAGAAGNAVVIEADAFKE 258 (513)
Q Consensus 241 ~~~~~~~aVvInaDefR~ 258 (513)
+...++.+.+.+.|.++.
T Consensus 317 l~~~~G~V~l~g~D~~r~ 334 (503)
T 2yhs_A 317 FEQQGKSVMLAAGDTFRA 334 (503)
T ss_dssp HHHTTCCEEEECCCTTCH
T ss_pred hhhcCCeEEEecCcccch
Confidence 332344555557898863
No 10
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=99.16 E-value=1.4e-09 Score=100.24 Aligned_cols=161 Identities=14% Similarity=0.192 Sum_probs=96.6
Q ss_pred CCCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccccch--hh---h----hhhhccccCchhhHHHHHh
Q 044777 212 DRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKESD--VI---Y----RALSSRSHVDMLQTAELVH 282 (513)
Q Consensus 212 ~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~~~--p~---y----~~l~~~G~~Dp~qaae~v~ 282 (513)
..+|.+|++.|+|||||||+++.|++. .+..+|+.|.+-... +. + ......|..++. +..
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~-------~g~~~i~~d~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~---~~~- 80 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKD-------YSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQ---EIT- 80 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHH-------SSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCH---HHH-
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHH-------cCceEEeHHHHHHHHHhccCCHHHHHHHHHHHcCCcCCH---HHH-
Confidence 456889999999999999999999876 467899998763211 00 0 001111211111 111
Q ss_pred HhHHHHHHHHHHHHHHCC-CcEEEECcCCChHHHHHHHHHHhhhhhcccccccccccccCCccccchhhhhhhhhhhhcc
Q 044777 283 QSSTDAASSLLVTALNEG-RDVIMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENYWDRIGEREQAQDG 361 (513)
Q Consensus 283 ~eAtrlA~~li~~aL~~G-rsVIlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Yw~~v~~a~~~~~~ 361 (513)
..+....+...+..| ..+|+|+...+......+-..+
T Consensus 81 ---~~~l~~~i~~~l~~g~~~~i~dg~~~~~~~~~~~~~~~--------------------------------------- 118 (203)
T 1ukz_A 81 ---LALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDI--------------------------------------- 118 (203)
T ss_dssp ---HHHHHHHHHHHHHTTCCEEEEETCCCSHHHHHHHHHHT---------------------------------------
T ss_pred ---HHHHHHHHHhhhccCCCeEEEeCCCCCHHHHHHHHHhc---------------------------------------
Confidence 123334455677777 5899998876644332111100
Q ss_pred cCCCCeEEEEEEEecChHHHHHHHHHHHHhcCCc-CchhHHHHHHHHHHHHH---HHhhcccceEEEEecCC
Q 044777 362 KMRKPYRIELVGVVCDAYLAVVRGIRRAIMCRRA-VRVKSQLKSHKRFANAF---LTYCQLVDSARLYSTNA 429 (513)
Q Consensus 362 ~~~~gYrI~Lv~V~~dpelAv~Rv~~Rv~~gGh~-VP~~~il~r~~rf~~nf---~~~~~lvD~a~lyDNs~ 429 (513)
.... .++++.+|+++.++|...|-...|+. .+.+.+.+++..+.... ..+....|.++..||+.
T Consensus 119 -~~~~---~~i~l~~~~e~~~~Rl~~R~~~~~~~~~~~e~~~~r~~~~~~~~~~~~~~~~~~~~vi~id~~~ 186 (203)
T 1ukz_A 119 -VESK---FILFFDCPEDIMLERLLERGKTSGRSDDNIESIKKRFNTFKETSMPVIEYFETKSKVVRVRCDR 186 (203)
T ss_dssp -CCCS---EEEEEECCHHHHHHHHHHHHHHHCCTTCSHHHHHHHHHHHHHTTHHHHHHHHTTTCEEEEECSS
T ss_pred -CCCC---EEEEEECCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEECCC
Confidence 0011 35778899999999999997655664 34666666766655432 12234578877778763
No 11
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=99.15 E-value=3.5e-10 Score=121.71 Aligned_cols=164 Identities=18% Similarity=0.186 Sum_probs=96.7
Q ss_pred CCCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccccchhhhhhhhccccCchhhH-HHHHhHhHHHHHH
Q 044777 212 DRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKESDVIYRALSSRSHVDMLQT-AELVHQSSTDAAS 290 (513)
Q Consensus 212 ~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~~~p~y~~l~~~G~~Dp~qa-ae~v~~eAtrlA~ 290 (513)
..+|.+|+|+|+|||||||+++.|++...|. +.+..+|+.|++|.....- ....+.+++... ....-......+.
T Consensus 32 ~~~~~lIvlvGlpGSGKSTia~~La~~L~~~--~~d~~v~s~D~~r~~~~~~--~~~~~~f~~~~~~~~~~re~~~~~~l 107 (520)
T 2axn_A 32 TNSPTVIVMVGLPARGKTYISKKLTRYLNWI--GVPTKVFNVGEYRREAVKQ--YSSYNFFRPDNEEAMKVRKQCALAAL 107 (520)
T ss_dssp -CCCEEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEEEHHHHHHHHHSC--CCCGGGGCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc--CCCeEEecccHHHHHhccC--CccccccCcccHHHHHHHHHHHHHHH
Confidence 3578999999999999999999998763342 3567889999998643210 000011111100 0000011111112
Q ss_pred HHHHHHH--HCCCcEEEECcCCChHHHHHHHHHHhhhhhcccccccccccccCCccccchhhhhhhhhhhhcccCCCCeE
Q 044777 291 SLLVTAL--NEGRDVIMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENYWDRIGEREQAQDGKMRKPYR 368 (513)
Q Consensus 291 ~li~~aL--~~GrsVIlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Yw~~v~~a~~~~~~~~~~gYr 368 (513)
..+...+ +.|.+||+|+|+....++..+.+.++ +.|+.
T Consensus 108 ~~~~~~L~~~~g~~VIvDat~~~~~~R~~~~~~a~----------------------------------------~~g~~ 147 (520)
T 2axn_A 108 RDVKSYLAKEGGQIAVFDATNTTRERRHMILHFAK----------------------------------------ENDFK 147 (520)
T ss_dssp HHHHHHHHHSCCCEEEEESCCCSHHHHHHHHHHHH----------------------------------------HHTCE
T ss_pred HHHHHHHHhcCCceEEecCCCCCHHHHHHHHHHHH----------------------------------------HcCCe
Confidence 2233444 57899999999999998887776552 24666
Q ss_pred EEEEEEecC-hHHHHHHHHHHHHh--cCCcCchhHHHHHH-HHHHHHHHHhhccc
Q 044777 369 IELVGVVCD-AYLAVVRGIRRAIM--CRRAVRVKSQLKSH-KRFANAFLTYCQLV 419 (513)
Q Consensus 369 I~Lv~V~~d-pelAv~Rv~~Rv~~--gGh~VP~~~il~r~-~rf~~nf~~~~~lv 419 (513)
+.++.+.|+ +++..+|+.+|... ..+..+.+.+.+.| +|+..--..|.++.
T Consensus 148 v~~l~~~~~d~e~i~~ri~~r~~~rPdl~~~d~e~~~~~~~~Ri~~y~~~Yepi~ 202 (520)
T 2axn_A 148 AFFIESVCDDPTVVASNIMEVKISSPDYKDCNSAEAMDDFMKRISCYEASYQPLD 202 (520)
T ss_dssp EEEEEEECCCHHHHHHHHHHHTTTSGGGTTSCHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred EEEEEEeCChHHHHHHHHHhhhhcCCccccCCHHHHHHHHHHHHHhhhhhhcccC
Confidence 777788775 88888888777543 22333344444444 44443333455544
No 12
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=99.15 E-value=5.3e-10 Score=100.82 Aligned_cols=126 Identities=10% Similarity=0.069 Sum_probs=78.2
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccccchhhhhhhhccccCchhhHHHHHhHhHHHHHHHH
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKESDVIYRALSSRSHVDMLQTAELVHQSSTDAASSL 292 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~~~p~y~~l~~~G~~Dp~qaae~v~~eAtrlA~~l 292 (513)
..+.++++.|+|||||||+++.|... .+.++|+.|.+........ . ..|.. + +..... ...+....+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~-------~g~~~i~~d~~~~~~~~~~-~-~~g~~-~-~~~~~~--~~~~~~~~~ 72 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQ-------LHAAFLDGDFLHPRRNIEK-M-ASGEP-L-NDDDRK--PWLQALNDA 72 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHH-------HTCEEEEGGGGCCHHHHHH-H-HTTCC-C-CHHHHH--HHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHh-------hCcEEEeCccccchHHHHH-h-hcCcC-C-Cccccc--cHHHHHHHH
Confidence 45679999999999999999999875 3678999999864211111 0 01111 0 100110 111223345
Q ss_pred HHHHHHCCCcEEEECcCCChHHHHHHHHHHhhhhhcccccccccccccCCccccchhhhhhhhhhhhcccCCCCeEEEEE
Q 044777 293 LVTALNEGRDVIMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENYWDRIGEREQAQDGKMRKPYRIELV 372 (513)
Q Consensus 293 i~~aL~~GrsVIlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Yw~~v~~a~~~~~~~~~~gYrI~Lv 372 (513)
+..++..|.++|+|+++..+.++.. + +..+..+.++
T Consensus 73 ~~~~~~~~~~~vi~~~~~~~~~~~~----l----------------------------------------~~~~~~~~vv 108 (175)
T 1knq_A 73 AFAMQRTNKVSLIVCSALKKHYRDL----L----------------------------------------REGNPNLSFI 108 (175)
T ss_dssp HHHHHHHCSEEEEECCCCSHHHHHH----H----------------------------------------HTTCTTEEEE
T ss_pred HHHHHhcCCcEEEEeCchHHHHHHH----H----------------------------------------HhcCCCEEEE
Confidence 5666677899999998765544321 1 1112234678
Q ss_pred EEecChHHHHHHHHHHHHhcCCcCch
Q 044777 373 GVVCDAYLAVVRGIRRAIMCRRAVRV 398 (513)
Q Consensus 373 ~V~~dpelAv~Rv~~Rv~~gGh~VP~ 398 (513)
++.+|++..++|...| ++|..+.
T Consensus 109 ~l~~~~e~~~~R~~~R---~~~~~~~ 131 (175)
T 1knq_A 109 YLKGDFDVIESRLKAR---KGHFFKT 131 (175)
T ss_dssp EEECCHHHHHHHHHTS---TTCCCCH
T ss_pred EEECCHHHHHHHHHhc---cCCCCch
Confidence 8899999999999887 4565543
No 13
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=99.12 E-value=4.1e-09 Score=95.00 Aligned_cols=158 Identities=16% Similarity=0.175 Sum_probs=90.7
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccccchhh-----hhh---hhccccCchhhHHHHHhHh
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKESDVI-----YRA---LSSRSHVDMLQTAELVHQS 284 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~~~p~-----y~~---l~~~G~~Dp~qaae~v~~e 284 (513)
.+|.+|++.|+|||||||+++.|.+. .+..+|+.|.+....+. ... +...|...+
T Consensus 4 ~~~~~I~l~G~~GsGKsT~~~~L~~~-------l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~---------- 66 (194)
T 1qf9_A 4 SKPNVVFVLGGPGSGKGTQCANIVRD-------FGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVP---------- 66 (194)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHHH-------HCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCC----------
T ss_pred CcCcEEEEECCCCCCHHHHHHHHHHH-------hCCeEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCC----------
Confidence 46789999999999999999999886 35789999876332210 000 000111100
Q ss_pred HHHHHHHHHHHHHH--CCCcEEEECcCCChHHHHHHHHHHhhhhhcccccccccccccCCccccchhhhhhhhhhhhccc
Q 044777 285 STDAASSLLVTALN--EGRDVIMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENYWDRIGEREQAQDGK 362 (513)
Q Consensus 285 AtrlA~~li~~aL~--~GrsVIlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Yw~~v~~a~~~~~~~ 362 (513)
......++..++. .|..||+|++......+..+...+.
T Consensus 67 -~~~~~~~l~~~i~~~~~~~vi~d~~~~~~~~~~~~~~~~~--------------------------------------- 106 (194)
T 1qf9_A 67 -SIVTVKLLKNAIDANQGKNFLVDGFPRNEENNNSWEENMK--------------------------------------- 106 (194)
T ss_dssp -HHHHHHHHHHHHHTSTTCCEEEETCCCSHHHHHHHHHHHT---------------------------------------
T ss_pred -HHHHHHHHHHHHHhcCCCCEEEeCcCCCHHHHHHHHHHHh---------------------------------------
Confidence 0111222333332 5789999998777554433322110
Q ss_pred CCCCeEE-EEEEEecChHHHHHHHHHHHHhcCC-cCchhHHHHHHHHHHHHHH---HhhcccceEEEEecCC
Q 044777 363 MRKPYRI-ELVGVVCDAYLAVVRGIRRAIMCRR-AVRVKSQLKSHKRFANAFL---TYCQLVDSARLYSTNA 429 (513)
Q Consensus 363 ~~~gYrI-~Lv~V~~dpelAv~Rv~~Rv~~gGh-~VP~~~il~r~~rf~~nf~---~~~~lvD~a~lyDNs~ 429 (513)
.+... .++++.+|++..++|+..|-...++ ....+.+.++.+.+..... .+....|.+++.||+.
T Consensus 107 --~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~id~~~ 176 (194)
T 1qf9_A 107 --DFVDTKFVLFFDCPEEVMTQRLLKRGESSGRSDDNIESIKKRFNTFNVQTKLVIDHYNKFDKVKIIPANR 176 (194)
T ss_dssp --TTCEEEEEEEEECCHHHHHHHHHHHHTTSCCTTCSHHHHHHHHHHHHHTHHHHHHHHHHTTCEEEEECSS
T ss_pred --ccCCCCEEEEEECCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHhHHHHHHHHHhCCCEEEEECCC
Confidence 11112 2577789999999999998543333 2334555555554443222 2333468777888763
No 14
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=99.09 E-value=2.9e-10 Score=102.65 Aligned_cols=121 Identities=12% Similarity=0.110 Sum_probs=67.1
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEe-cccccccchhhhhhhhccccCchhhHHHHHhHhHHHHHHHH
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVI-EADAFKESDVIYRALSSRSHVDMLQTAELVHQSSTDAASSL 292 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvI-naDefR~~~p~y~~l~~~G~~Dp~qaae~v~~eAtrlA~~l 292 (513)
+|.+|+|.|+|||||||+++.|.+. .+..++ ++|.+...... +...|..+ +... ..........
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~-------l~~~~i~d~~~~g~~i~~---~~~~g~~~-~~~~----~~~~~~~~~~ 68 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHER-------LPGSFVFEPEEMGQALRK---LTPGFSGD-PQEH----PMWIPLMLDA 68 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHH-------STTCEECCTHHHHHHHHH---TSTTCCSC-GGGS----TTHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh-------cCCCEEEchhhhHHHHHH---hCccccch-hhhh----HHHHHHHHHH
Confidence 5779999999999999999999876 122344 64433211111 01111111 0000 0111222334
Q ss_pred HHHHHHC-CCcEEEECcCCChHHHHHHHHHHhhhhhcccccccccccccCCccccchhhhhhhhhhhhcccCCCCeEEEE
Q 044777 293 LVTALNE-GRDVIMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENYWDRIGEREQAQDGKMRKPYRIEL 371 (513)
Q Consensus 293 i~~aL~~-GrsVIlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Yw~~v~~a~~~~~~~~~~gYrI~L 371 (513)
+..+++. |..||+|+|+....+.......++ ..|+.+.+
T Consensus 69 i~~~l~~~g~~vi~d~~~~~~~~~~~~~~~l~----------------------------------------~~~~~~~~ 108 (183)
T 2vli_A 69 LQYASREAAGPLIVPVSISDTARHRRLMSGLK----------------------------------------DRGLSVHH 108 (183)
T ss_dssp HHHHHHHCSSCEEEEECCCCHHHHHHHHHHHH----------------------------------------HTTCCCEE
T ss_pred HHHHHHhCCCcEEEeeeccCHHHHHHHHHHHH----------------------------------------hcCCceEE
Confidence 4455665 889999999998776655544331 12334456
Q ss_pred EEEecChHHHHHHHHHHH
Q 044777 372 VGVVCDAYLAVVRGIRRA 389 (513)
Q Consensus 372 v~V~~dpelAv~Rv~~Rv 389 (513)
+++.+|++++++|...|.
T Consensus 109 i~l~~~~e~~~~R~~~R~ 126 (183)
T 2vli_A 109 FTLIAPLNVVLERLRRDG 126 (183)
T ss_dssp EEEECCHHHHHHHHHTC-
T ss_pred EEEeCCHHHHHHHHHhcc
Confidence 888899999999998873
No 15
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=99.09 E-value=5.3e-10 Score=103.50 Aligned_cols=126 Identities=17% Similarity=0.103 Sum_probs=79.9
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccccchhhhhhhhccccCchhhHHHHHhHhHHHHHHHHH
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKESDVIYRALSSRSHVDMLQTAELVHQSSTDAASSLL 293 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~~~p~y~~l~~~G~~Dp~qaae~v~~eAtrlA~~li 293 (513)
+|.+|+|.|+|||||||+++.|.+. .++.+|+.|.+...... ..... |.. .+.. ........+
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~~-------lg~~~i~~d~~~~~~~~-~~~~~-g~~--~~~~------~~~~~~~~l 79 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAEA-------CGYPFIEGDALHPPENI-RKMSE-GIP--LTDD------DRWPWLAAI 79 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHHH-------HTCCEEEGGGGCCHHHH-HHHHH-TCC--CCHH------HHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH-------hCCEEEeCCcCcchhhH-HHHhc-CCC--CCch------hhHHHHHHH
Confidence 4678999999999999999999886 35779999998532111 11111 111 0100 011112234
Q ss_pred HHHHHCCCcEEEECcCCChHHHHHHHHHHhhhhhcccccccccccccCCccccchhhhhhhhhhhhcccCCCCeEEEEEE
Q 044777 294 VTALNEGRDVIMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENYWDRIGEREQAQDGKMRKPYRIELVG 373 (513)
Q Consensus 294 ~~aL~~GrsVIlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Yw~~v~~a~~~~~~~~~~gYrI~Lv~ 373 (513)
...+..|.+||+|+++..+.++..+... .+..+.+++
T Consensus 80 ~~~~~~~~~vivd~~~~~~~~~~~l~~~-------------------------------------------~~~~~~vi~ 116 (202)
T 3t61_A 80 GERLASREPVVVSCSALKRSYRDKLRES-------------------------------------------APGGLAFVF 116 (202)
T ss_dssp HHHHTSSSCCEEECCCCSHHHHHHHHHT-------------------------------------------STTCCEEEE
T ss_pred HHHHhcCCCEEEECCCCCHHHHHHHHHh-------------------------------------------cCCCeEEEE
Confidence 4555889999999999877665543221 112235678
Q ss_pred EecChHHHHHHHHHHHHhcCCcCchhHHH
Q 044777 374 VVCDAYLAVVRGIRRAIMCRRAVRVKSQL 402 (513)
Q Consensus 374 V~~dpelAv~Rv~~Rv~~gGh~VP~~~il 402 (513)
+.+|++..++|...|. ++..+.+.+.
T Consensus 117 l~~~~e~~~~Rl~~R~---~~~~~~~~~~ 142 (202)
T 3t61_A 117 LHGSESVLAERMHHRT---GHFMPSSLLQ 142 (202)
T ss_dssp EECCHHHHHHHHHHHH---SSCCCHHHHH
T ss_pred EeCCHHHHHHHHHHhh---ccCCCHHHHH
Confidence 8899999999999884 4555544443
No 16
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=99.09 E-value=1.6e-09 Score=98.21 Aligned_cols=155 Identities=17% Similarity=0.103 Sum_probs=88.3
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc-ccchhh----hh---hhhccccCchhhHHHHHhHhH
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF-KESDVI----YR---ALSSRSHVDMLQTAELVHQSS 285 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef-R~~~p~----y~---~l~~~G~~Dp~qaae~v~~eA 285 (513)
++.+|++.|+|||||||+++.|++. .+..+++.|.+ ++..+. .. .....|...+
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~-------l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~----------- 64 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQE-------LGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVP----------- 64 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHH-------HTCEEECHHHHHHHHHHTTCHHHHHHHHHHHTTCCCC-----------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH-------hCCeEecHHHHHHHHHHcCChHHHHHHHHHHcCCcCC-----------
Confidence 5678999999999999999999875 35678998765 332111 00 0000111100
Q ss_pred HHHHHHHHHHHHHCCCcEEEECcCCChHHHHHHHHHHhhhhhcccccccccccccCCccccchhhhhhhhhhhhcccCCC
Q 044777 286 TDAASSLLVTALNEGRDVIMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENYWDRIGEREQAQDGKMRK 365 (513)
Q Consensus 286 trlA~~li~~aL~~GrsVIlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Yw~~v~~a~~~~~~~~~~ 365 (513)
.......+...+..+ +|+|++..+......+...+ ...
T Consensus 65 ~~~~~~~~~~~l~~~--~i~dg~~~~~~~~~~l~~~l----------------------------------------~~~ 102 (186)
T 3cm0_A 65 DDLILELIREELAER--VIFDGFPRTLAQAEALDRLL----------------------------------------SET 102 (186)
T ss_dssp HHHHHHHHHHHCCSE--EEEESCCCSHHHHHHHHHHH----------------------------------------HHT
T ss_pred HHHHHHHHHHHhcCC--EEEeCCCCCHHHHHHHHHHH----------------------------------------Hhc
Confidence 011122344555554 99999887754433221111 112
Q ss_pred CeEE-EEEEEecChHHHHHHHHHHHHhcCC-cCchhHHHHHHHHHHHHH---HHhhcccceEEEEecC
Q 044777 366 PYRI-ELVGVVCDAYLAVVRGIRRAIMCRR-AVRVKSQLKSHKRFANAF---LTYCQLVDSARLYSTN 428 (513)
Q Consensus 366 gYrI-~Lv~V~~dpelAv~Rv~~Rv~~gGh-~VP~~~il~r~~rf~~nf---~~~~~lvD~a~lyDNs 428 (513)
|+.. .++++.+|++.+++|+..|....|| ..+.+.+.++...+.... ..+....+.+++.||+
T Consensus 103 ~~~~~~vi~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~~~~id~~ 170 (186)
T 3cm0_A 103 GTRLLGVVLVEVPEEELVRRILRRAELEGRSDDNEETVRRRLEVYREKTEPLVGYYEARGVLKRVDGL 170 (186)
T ss_dssp TEEEEEEEEEECCHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred CCCCCEEEEEeCCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECC
Confidence 3333 3467789999999999998644344 345555555554444331 1222334556777775
No 17
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.08 E-value=3.3e-10 Score=114.48 Aligned_cols=127 Identities=17% Similarity=0.251 Sum_probs=94.4
Q ss_pred HHHHHHHHHhhccCccchhhhhhcCCCCcchHHHHHHHHHHHHhhhhhhhccchhhHHHHHhhcCCCchhhhhHHHHHHH
Q 044777 83 LCKLAAEYIRKSEGCEDDIYTFFSSEPAADSLFIKLVEEFERCILSYFAFHWSHADLMISQVLNSDAEPKKKLKHIVMQA 162 (513)
Q Consensus 83 ~~~l~~~~l~~s~~~~~~i~~~~~~~~~~~~l~~~~~eele~~~~~~~~~~~~~~~~li~~~l~~~~~~~~~~~~~v~~a 162 (513)
+.||..++-++.+++.+.|..+|.+.+ ++++.++||++ .||.++++.+.. ..+++.
T Consensus 16 ~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~--------------~L~~~dv~~~~~------~~~~~~ 71 (306)
T 1vma_A 16 FDFLKKGLQKTKETFFGRVVKLLKGKK----LDDETREELEE--------------LLIQADVGVETT------EYILER 71 (306)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHTTCC----CCHHHHHHHHH--------------HHHHTTCCHHHH------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCC----CCHHHHHHHHH--------------HHHHCCCCHHHH------HHHHHH
Confidence 568999999999999999999997545 44577899999 999999997766 777777
Q ss_pred HHhHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCCCCcccchhcccc---cCCCCCcEEEEEecCCCCchHHHHHHHhcCc
Q 044777 163 TREQRFERVTKNLKVARVFTTLVEEMKAMGLAPNDDSQCTEVMAPV---ALGDRSPVLLFMGGGMGAGKSTVLKDILKEP 239 (513)
Q Consensus 163 ~r~~rf~r~~~~~~v~r~~~~~ve~~~~~~~~~~~~~~~~~vl~p~---~~~~~~P~LILmaG~pGAGKSTla~~Ll~~~ 239 (513)
+++ .+.. +.+.+.+.+. ++|.|. .....+|.+++|.|+|||||||++..|+..
T Consensus 72 ~~~------~~~~-~~~~~~~~l~----------------~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~- 127 (306)
T 1vma_A 72 LEE------KDGD-ALESLKEIIL----------------EILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKM- 127 (306)
T ss_dssp HTT------CCSC-HHHHHHHHHH----------------HHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHH-
T ss_pred HHh------cCHH-HHHHHHHHHH----------------HHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHH-
Confidence 766 2222 6666665552 222222 112457899999999999999999999864
Q ss_pred ccccCCCCeEEeccccccc
Q 044777 240 FWAGAAGNAVVIEADAFKE 258 (513)
Q Consensus 240 f~~~~~~~aVvInaDefR~ 258 (513)
+...+..+.++++|.+|.
T Consensus 128 -l~~~g~kV~lv~~D~~r~ 145 (306)
T 1vma_A 128 -FVDEGKSVVLAAADTFRA 145 (306)
T ss_dssp -HHHTTCCEEEEEECTTCH
T ss_pred -HHhcCCEEEEEccccccH
Confidence 333456778889999873
No 18
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=99.08 E-value=2.4e-09 Score=97.35 Aligned_cols=158 Identities=16% Similarity=0.148 Sum_probs=90.6
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccccchh----hh----hhhhccccCchhhHHHHHhHhH
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKESDV----IY----RALSSRSHVDMLQTAELVHQSS 285 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~~~p----~y----~~l~~~G~~Dp~qaae~v~~eA 285 (513)
+|.+|++.|+|||||||+++.|++. .+..+|+.|.+-...+ .+ ......|..-+ .+. .
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~-------l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~---~~~----~ 73 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQK-------YGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVP---LET----V 73 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHH-------HCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCC---HHH----H
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH-------hCCeEEcHHHHHHHHHHcCChHHHHHHHHHHcCCcCC---HHH----H
Confidence 5678999999999999999999886 3567899887632211 00 00001111100 011 1
Q ss_pred HHHHHHHHHHHHHCCCcEEEECcCCChHHHHHHHHHHhhhhhcccccccccccccCCccccchhhhhhhhhhhhcccCCC
Q 044777 286 TDAASSLLVTALNEGRDVIMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENYWDRIGEREQAQDGKMRK 365 (513)
Q Consensus 286 trlA~~li~~aL~~GrsVIlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Yw~~v~~a~~~~~~~~~~ 365 (513)
.......+..++..|..||+|++..+..+...+...+ ...
T Consensus 74 ~~~~~~~i~~~~~~~~~vi~d~~~~~~~~~~~~~~~~----------------------------------------~~~ 113 (196)
T 2c95_A 74 LDMLRDAMVAKVNTSKGFLIDGYPREVQQGEEFERRI----------------------------------------GQP 113 (196)
T ss_dssp HHHHHHHHHHHTTTCSCEEEESCCCSHHHHHHHHHHT----------------------------------------CCC
T ss_pred HHHHHHHHHhccccCCcEEEeCCCCCHHHHHHHHHhc----------------------------------------CCC
Confidence 1223344555667889999998766644433221100 001
Q ss_pred CeEEEEEEEecChHHHHHHHHHHHHhcCCc-CchhHHHHHHHHHHHHHHH---hhcccceEEEEecC
Q 044777 366 PYRIELVGVVCDAYLAVVRGIRRAIMCRRA-VRVKSQLKSHKRFANAFLT---YCQLVDSARLYSTN 428 (513)
Q Consensus 366 gYrI~Lv~V~~dpelAv~Rv~~Rv~~gGh~-VP~~~il~r~~rf~~nf~~---~~~lvD~a~lyDNs 428 (513)
-.++++.+|++...+|...|-...+|. .+.+.+.++.+.+...... +....|.+++.||+
T Consensus 114 ---~~vi~l~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~Id~~ 177 (196)
T 2c95_A 114 ---TLLLYVDAGPETMTQRLLKRGETSGRVDDNEETIKKRLETYYKATEPVIAFYEKRGIVRKVNAE 177 (196)
T ss_dssp ---SEEEEEECCHHHHHHHHHHHHTSSSCGGGSHHHHHHHHHHHHHHTHHHHHHHHHHTCEEEEECC
T ss_pred ---CEEEEEECCHHHHHHHHHccCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECC
Confidence 135778899999999999886444453 2445555555554443222 12235677677765
No 19
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=99.06 E-value=2.8e-09 Score=93.72 Aligned_cols=155 Identities=17% Similarity=0.183 Sum_probs=85.3
Q ss_pred EEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc-ccchhhhhhhhccccCchhhHHHHHhHh-HHHHHHHHH
Q 044777 216 VLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF-KESDVIYRALSSRSHVDMLQTAELVHQS-STDAASSLL 293 (513)
Q Consensus 216 ~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef-R~~~p~y~~l~~~G~~Dp~qaae~v~~e-AtrlA~~li 293 (513)
.+|+|.|+|||||||+++.| +. .+..+++.|++ ++...... ... .+........... .......++
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~-------~g~~~i~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~ 69 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KE-------RGAKVIVMSDVVRKRYSIEA-KPG---ERLMDFAKRLREIYGDGVVARLC 69 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HH-------TTCEEEEHHHHHHHHHHHHC-------CCHHHHHHHHHHHHCTTHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH-HH-------CCCcEEEHhHHHHHHHHhcC-CCh---hHHHHHHHHHHhhCCHHHHHHHH
Confidence 37899999999999999999 54 46667876544 43221100 000 0100111111000 112233455
Q ss_pred HHHH--HCCCcEEEECcCCChHHHHHHHHHHhhhhhcccccccccccccCCccccchhhhhhhhhhhhcccCCCCeEEEE
Q 044777 294 VTAL--NEGRDVIMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENYWDRIGEREQAQDGKMRKPYRIEL 371 (513)
Q Consensus 294 ~~aL--~~GrsVIlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Yw~~v~~a~~~~~~~~~~gYrI~L 371 (513)
...+ ..+..||+|+. .++..+..+.+.+ . . ...+
T Consensus 70 ~~~l~~~~~~~vi~dg~-~~~~~~~~l~~~~----------------------------------------~-~--~~~~ 105 (179)
T 3lw7_A 70 VEELGTSNHDLVVFDGV-RSLAEVEEFKRLL----------------------------------------G-D--SVYI 105 (179)
T ss_dssp HHHHCSCCCSCEEEECC-CCHHHHHHHHHHH----------------------------------------C-S--CEEE
T ss_pred HHHHHhcCCCeEEEeCC-CCHHHHHHHHHHh----------------------------------------C-C--CcEE
Confidence 6666 77889999997 6665544333211 0 1 2356
Q ss_pred EEEecChHHHHHHHHHHHHhcCCcCchhHHHHHHHHHHH-HHHHhhcccceEEEEecCC
Q 044777 372 VGVVCDAYLAVVRGIRRAIMCRRAVRVKSQLKSHKRFAN-AFLTYCQLVDSARLYSTNA 429 (513)
Q Consensus 372 v~V~~dpelAv~Rv~~Rv~~gGh~VP~~~il~r~~rf~~-nf~~~~~lvD~a~lyDNs~ 429 (513)
+++.+|++..++|...|-... .....+.+.+++.+... ....+...+|. +.||+.
T Consensus 106 i~l~~~~~~~~~R~~~R~~~~-~~~~~~~~~~r~~~~~~~~~~~~~~~ad~--vId~~~ 161 (179)
T 3lw7_A 106 VAVHSPPKIRYKRMIERLRSD-DSKEISELIRRDREELKLGIGEVIAMADY--IITNDS 161 (179)
T ss_dssp EEEECCHHHHHHHHHTCC-----CCCHHHHHHHHHHHHHHTHHHHHHTCSE--EEECCS
T ss_pred EEEECCHHHHHHHHHhccCCC-CcchHHHHHHHHHhhhccChHhHHHhCCE--EEECCC
Confidence 888999999999998882211 12344555555533222 24556777785 445653
No 20
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=99.04 E-value=1.5e-09 Score=97.68 Aligned_cols=126 Identities=17% Similarity=0.186 Sum_probs=73.9
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccccchhh-hhhhhcccc-C-chh--hHHHHHhHhHHHH
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKESDVI-YRALSSRSH-V-DML--QTAELVHQSSTDA 288 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~~~p~-y~~l~~~G~-~-Dp~--qaae~v~~eAtrl 288 (513)
+|.+|++.|+|||||||+++.|++.. +.+++.++.|.+++..+. +.... .|. + +.. ...+.. ......
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l-----~~~~~~~~~D~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~ 74 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVL-----PEPWLAFGVDSLIEAMPLKMQSAE-GGIEFDADGGVSIGPEF-RALEGA 74 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHS-----SSCEEEEEHHHHHHHSCGGGGTST-TSEEECTTSCEEECHHH-HHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc-----CCCeEEeccchHhhhcchhhccch-hhccccCCCccccchhH-HHHHHH
Confidence 46799999999999999999999862 235667789988654432 11000 000 0 000 000000 000111
Q ss_pred HHHHHHHHHHCCCcEEEECcCCC-hHHHHHHHHHHhhhhhcccccccccccccCCccccchhhhhhhhhhhhcccCCCCe
Q 044777 289 ASSLLVTALNEGRDVIMDGTLSW-VPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENYWDRIGEREQAQDGKMRKPY 367 (513)
Q Consensus 289 A~~li~~aL~~GrsVIlDtTlS~-~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Yw~~v~~a~~~~~~~~~~gY 367 (513)
....+..+++.|.+||+|+++.. +.....+.+.+ .++
T Consensus 75 ~~~~~~~~~~~g~~vi~~~~~~~~~~~~~~~~~~~------------------------------------------~~~ 112 (178)
T 1qhx_A 75 WAEGVVAMARAGARIIIDDVFLGGAAAQERWRSFV------------------------------------------GDL 112 (178)
T ss_dssp HHHHHHHHHHTTCEEEEEECCTTTHHHHHHHHHHH------------------------------------------TTC
T ss_pred HHHHHHHHHhcCCeEEEEeccccChHHHHHHHHHh------------------------------------------cCC
Confidence 12234566788999999999864 33333332211 122
Q ss_pred EEEEEEEecChHHHHHHHHHH
Q 044777 368 RIELVGVVCDAYLAVVRGIRR 388 (513)
Q Consensus 368 rI~Lv~V~~dpelAv~Rv~~R 388 (513)
.+..+++.||++...+|...|
T Consensus 113 ~~~~v~l~~~~e~l~~R~~~r 133 (178)
T 1qhx_A 113 DVLWVGVRCDGAVAEGRETAR 133 (178)
T ss_dssp CEEEEEEECCHHHHHHHHHHT
T ss_pred cEEEEEEECCHHHHHHHHHhh
Confidence 345677889999999999877
No 21
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=99.02 E-value=2.6e-09 Score=99.27 Aligned_cols=130 Identities=14% Similarity=0.078 Sum_probs=80.4
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccccchhhhhhhhccccCchhhHHHHHhHhHHHHHHHH
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKESDVIYRALSSRSHVDMLQTAELVHQSSTDAASSL 292 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~~~p~y~~l~~~G~~Dp~qaae~v~~eAtrlA~~l 292 (513)
..+.+++|.|+|||||||+++.|+.. .+.++++.|.+........... |.. .+..... .........
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~-------~g~~~i~~d~~~~~~~~~~~~~--g~~--~~~~~~~--~~~~~~~~~ 93 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADE-------TGLEFAEADAFHSPENIATMQR--GIP--LTDEDRW--PWLRSLAEW 93 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHH-------HCCEEEEGGGGSCHHHHHHHHT--TCC--CCHHHHH--HHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHh-------hCCeEEcccccccHHHHHHHhc--CCC--CCCcccc--cHHHHHHHH
Confidence 45779999999999999999999876 3678999999853221111011 111 0111111 112333445
Q ss_pred HHHHHHCCCcEEEECcCCChHHHHHHHHHHhhhhhcccccccccccccCCccccchhhhhhhhhhhhcccCCCCeEEEEE
Q 044777 293 LVTALNEGRDVIMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENYWDRIGEREQAQDGKMRKPYRIELV 372 (513)
Q Consensus 293 i~~aL~~GrsVIlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Yw~~v~~a~~~~~~~~~~gYrI~Lv 372 (513)
+...+..|.++|+|+++..+..++.+.+ ... .+.++
T Consensus 94 ~~~~~~~g~~viid~~~~~~~~~~~l~~------------------------------------------~~~--~~~vv 129 (200)
T 4eun_A 94 MDARADAGVSTIITCSALKRTYRDVLRE------------------------------------------GPP--SVDFL 129 (200)
T ss_dssp HHHHHHTTCCEEEEECCCCHHHHHHHTT------------------------------------------SSS--CCEEE
T ss_pred HHHHHhcCCCEEEEchhhhHHHHHHHHH------------------------------------------hCC--ceEEE
Confidence 5666788999999998877555432211 001 23568
Q ss_pred EEecChHHHHHHHHHHHHhcCCcCchhHHH
Q 044777 373 GVVCDAYLAVVRGIRRAIMCRRAVRVKSQL 402 (513)
Q Consensus 373 ~V~~dpelAv~Rv~~Rv~~gGh~VP~~~il 402 (513)
++.+|++..++|...| +++..+.+.+.
T Consensus 130 ~l~~~~e~l~~Rl~~R---~~~~~~~~~l~ 156 (200)
T 4eun_A 130 HLDGPAEVIKGRMSKR---EGHFMPASLLQ 156 (200)
T ss_dssp EEECCHHHHHHHHTTC---SCCSSCGGGHH
T ss_pred EEeCCHHHHHHHHHhc---ccCCCCHHHHH
Confidence 8899999999999776 35555544443
No 22
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.99 E-value=8.8e-10 Score=110.93 Aligned_cols=137 Identities=17% Similarity=0.255 Sum_probs=92.7
Q ss_pred HHHHHHHhhccCccchhhhhhcCCCCcchHH-HHHHHHHHHHhhhhhhhccchhhHHHHHhhcCCCchhhhhHHHHHHHH
Q 044777 85 KLAAEYIRKSEGCEDDIYTFFSSEPAADSLF-IKLVEEFERCILSYFAFHWSHADLMISQVLNSDAEPKKKLKHIVMQAT 163 (513)
Q Consensus 85 ~l~~~~l~~s~~~~~~i~~~~~~~~~~~~l~-~~~~eele~~~~~~~~~~~~~~~~li~~~l~~~~~~~~~~~~~v~~a~ 163 (513)
+|..++-++.+++. .|.++|.+.+. ++ .+.++|||+ .||.++++.+.. ..+++.+
T Consensus 2 ~~~~~l~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~l~~--------------~L~~~dv~~~~~------~~~~~~~ 57 (302)
T 3b9q_A 2 KVFSGFSKTRENLA-VIDELLLFWNL---AETDRVLDELEE--------------ALLVSDFGPKIT------VRIVERL 57 (302)
T ss_dssp HHHHHTHHHHHHHT-HHHHHHTTCCG---GGHHHHHHHHHH--------------HHHHTTCCHHHH------HHHHHHH
T ss_pred hHHHHHHHHHHHHH-HHHHHHcCCCc---CCHHHHHHHHHH--------------HHHHCCCCHHHH------HHHHHHH
Confidence 67788888888888 99999975332 44 678899999 999999997777 7777777
Q ss_pred HhHHH-HhhhhhhHHHHHHHHHHHHHHHhcCCCCCCcccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcCcccc
Q 044777 164 REQRF-ERVTKNLKVARVFTTLVEEMKAMGLAPNDDSQCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKEPFWA 242 (513)
Q Consensus 164 r~~rf-~r~~~~~~v~r~~~~~ve~~~~~~~~~~~~~~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~ 242 (513)
++.-. +.+.....+.+.+.+.+.++..-. . ...|+.-....|.++.+.|+|||||||+++.|+.. +.
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---------~-~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~--l~ 125 (302)
T 3b9q_A 58 REDIMSGKLKSGSEIKDALKESVLEMLAKK---------N-SKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHR--LK 125 (302)
T ss_dssp HHHHHTTSCCSHHHHHHHHHHHHHHHHCC------------CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHH--HH
T ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHhCCc---------c-cccccccccCCCcEEEEEcCCCCCHHHHHHHHHHH--HH
Confidence 76422 233344456666666553222110 0 00122222457899999999999999999999864 33
Q ss_pred cCCCCeEEecccccc
Q 044777 243 GAAGNAVVIEADAFK 257 (513)
Q Consensus 243 ~~~~~aVvInaDefR 257 (513)
..++.+.+...|.++
T Consensus 126 ~~~g~V~l~g~d~~r 140 (302)
T 3b9q_A 126 NEGTKVLMAAGDTFR 140 (302)
T ss_dssp HTTCCEEEECCCCSC
T ss_pred HcCCeEEEEeecccc
Confidence 334566666778876
No 23
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=98.95 E-value=5.9e-09 Score=95.02 Aligned_cols=87 Identities=16% Similarity=0.285 Sum_probs=52.5
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccccchhh-----hh---hhhccccCchhhHHHHHhHhH
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKESDVI-----YR---ALSSRSHVDMLQTAELVHQSS 285 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~~~p~-----y~---~l~~~G~~Dp~qaae~v~~eA 285 (513)
+|.+|++.|+|||||||+++.|.+. .++.+++.|.+-...+. .. .....|...+ .+. .
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~-------l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~---~~~----~ 76 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEK-------YGFTHLSTGELLREELASESERSKLIRDIMERGDLVP---SGI----V 76 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHH-------HTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCC---HHH----H
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH-------hCCeEEcHHHHHHHHHHhCCHHHHHHHHHHHcCCcCC---HHH----H
Confidence 4678999999999999999999986 35789999887322210 00 0111111100 011 1
Q ss_pred HHHHHHHHHHHHHCCCcEEEECcCCChHH
Q 044777 286 TDAASSLLVTALNEGRDVIMDGTLSWVPF 314 (513)
Q Consensus 286 trlA~~li~~aL~~GrsVIlDtTlS~~~~ 314 (513)
..+....+...+..|..||+|+.......
T Consensus 77 ~~~~~~~i~~~~~~~~~vi~dg~~~~~~~ 105 (199)
T 2bwj_A 77 LELLKEAMVASLGDTRGFLIDGYPREVKQ 105 (199)
T ss_dssp HHHHHHHHHHHTTSCSCEEEETCCSSHHH
T ss_pred HHHHHHHHhcccccCccEEEeCCCCCHHH
Confidence 12223334455567889999988776543
No 24
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.92 E-value=1.2e-09 Score=110.97 Aligned_cols=139 Identities=14% Similarity=0.166 Sum_probs=93.8
Q ss_pred HHHHHHhhccCccchhhhhhcC-CCCcchHHHHHHHHHHHHhhhhhhhccchhhHHHHHhhcCCCchhhhhHHHHHHHHH
Q 044777 86 LAAEYIRKSEGCEDDIYTFFSS-EPAADSLFIKLVEEFERCILSYFAFHWSHADLMISQVLNSDAEPKKKLKHIVMQATR 164 (513)
Q Consensus 86 l~~~~l~~s~~~~~~i~~~~~~-~~~~~~l~~~~~eele~~~~~~~~~~~~~~~~li~~~l~~~~~~~~~~~~~v~~a~r 164 (513)
+-.++.++++++.+.|..+|.+ .+ ++++.++|||+ .||.++++.+.. ..+++.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~--------------~L~~~dv~~~~~------~~~~~~~~ 62 (320)
T 1zu4_A 7 MEKAMLKSAFNFSKDIKKLSKKYKQ----ADDEFFEELED--------------VLIQTDMGMKMV------LKVSNLVR 62 (320)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHTCCC----CSHHHHHHHHH--------------HHHHTTCCHHHH------HHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHcCCCC----CCHHHHHHHHH--------------HHHHcCCCHHHH------HHHHHHHH
Confidence 4567777888888889999986 55 44567899999 999999997777 77788887
Q ss_pred hHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCCCCcccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcCcccccC
Q 044777 165 EQRFERVTKNLKVARVFTTLVEEMKAMGLAPNDDSQCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGA 244 (513)
Q Consensus 165 ~~rf~r~~~~~~v~r~~~~~ve~~~~~~~~~~~~~~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~ 244 (513)
+.-......+. +...+.+.+.++-.-.. ..+++.++.-....|.+++|.|+||+||||++..|+.. +...
T Consensus 63 ~~~~~~~~~~~-~~~~~~~~l~~~l~~~~-------~~~~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~--l~~~ 132 (320)
T 1zu4_A 63 KKTKRDTSFEN-IKDALVESLYQAYTDND-------WTNKKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANY--YAEL 132 (320)
T ss_dssp HHCCTTCCHHH-HHHHHHHHHHHHHHCSC-------C----CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHH--HHHT
T ss_pred HHHhhchhHHH-HHHHHHHHHHHHhCccc-------ccccccCccccCCCCeEEEEECCCCCCHHHHHHHHHHH--HHHC
Confidence 75222222222 66666665533332110 00111222223457899999999999999999999864 3445
Q ss_pred CCCeEEeccccccc
Q 044777 245 AGNAVVIEADAFKE 258 (513)
Q Consensus 245 ~~~aVvInaDefR~ 258 (513)
+..+.++++|.++.
T Consensus 133 g~kVllid~D~~r~ 146 (320)
T 1zu4_A 133 GYKVLIAAADTFRA 146 (320)
T ss_dssp TCCEEEEECCCSCH
T ss_pred CCeEEEEeCCCcch
Confidence 67788889998863
No 25
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.89 E-value=3.3e-09 Score=109.62 Aligned_cols=140 Identities=16% Similarity=0.242 Sum_probs=94.6
Q ss_pred HHHHHHHHHHhhccCccchhhhhhcCCCCcchHH-HHHHHHHHHHhhhhhhhccchhhHHHHHhhcCCCchhhhhHHHHH
Q 044777 82 QLCKLAAEYIRKSEGCEDDIYTFFSSEPAADSLF-IKLVEEFERCILSYFAFHWSHADLMISQVLNSDAEPKKKLKHIVM 160 (513)
Q Consensus 82 ~~~~l~~~~l~~s~~~~~~i~~~~~~~~~~~~l~-~~~~eele~~~~~~~~~~~~~~~~li~~~l~~~~~~~~~~~~~v~ 160 (513)
-+.+|..++-+..+.+. ++..+|.+... ++ .+.++|||+ .||.++++.+.. ..++
T Consensus 56 ~f~~l~~~l~~~~~~~~-~~~~l~~~~~~---~~~~~~~~~l~~--------------~Ll~adv~~~~~------~~~~ 111 (359)
T 2og2_A 56 DVEKVFSGFSKTRENLA-VIDELLLFWNL---AETDRVLDELEE--------------ALLVSDFGPKIT------VRIV 111 (359)
T ss_dssp HHHHHHHHTHHHHHHHT-HHHHHHTTCCG---GGHHHHHHHHHH--------------HHHHTTCCHHHH------HHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHhcCCCc---CCHHHHHHHHHH--------------HHHHCCCCHHHH------HHHH
Confidence 45688888888877777 88888865442 33 778899999 999999997777 7777
Q ss_pred HHHHhHH-HHhhhhhhHHHHHHHHHHHHHHHhcCCCCCCcccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcCc
Q 044777 161 QATREQR-FERVTKNLKVARVFTTLVEEMKAMGLAPNDDSQCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKEP 239 (513)
Q Consensus 161 ~a~r~~r-f~r~~~~~~v~r~~~~~ve~~~~~~~~~~~~~~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~~ 239 (513)
+.+++.- -+.+.....+...+.+.+.++-.-. .. ..|+.-....|.++.|.|+|||||||+++.|+..
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~---------~~-~~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~- 180 (359)
T 2og2_A 112 ERLREDIMSGKLKSGSEIKDALKESVLEMLAKK---------NS-KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHR- 180 (359)
T ss_dssp HHHHHHHHTTSCCSHHHHHHHHHHHHHHHHCCC-------------CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHH-
T ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHHhCCc---------cc-CCCcceecCCCeEEEEEcCCCChHHHHHHHHHhh-
Confidence 7777652 2233444556666666663222110 00 0122222457899999999999999999999864
Q ss_pred ccccCCCCeEEecccccc
Q 044777 240 FWAGAAGNAVVIEADAFK 257 (513)
Q Consensus 240 f~~~~~~~aVvInaDefR 257 (513)
+...++.+.+...|.+|
T Consensus 181 -l~~~~G~V~l~g~D~~r 197 (359)
T 2og2_A 181 -LKNEGTKVLMAAGDTFR 197 (359)
T ss_dssp -HHHTTCCEEEECCCCSC
T ss_pred -ccccCCEEEEecccccc
Confidence 33334566667788876
No 26
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=98.87 E-value=6.7e-09 Score=95.97 Aligned_cols=38 Identities=21% Similarity=0.218 Sum_probs=32.0
Q ss_pred CCCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 212 DRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 212 ~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
..+|.+|+|.|+|||||||+++.|.+. .+..+|+.|.+
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~-------l~~~~i~~d~~ 54 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEK-------LGIPQISTGEL 54 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHH-------HTCCEEEHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH-------hCCcEEehhHH
Confidence 457889999999999999999999886 24568898765
No 27
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=98.87 E-value=1.2e-08 Score=95.01 Aligned_cols=155 Identities=14% Similarity=0.047 Sum_probs=88.6
Q ss_pred EEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc-ccchhh----hh---hhhccccCchhhHHHHHhHhHHHH
Q 044777 217 LLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF-KESDVI----YR---ALSSRSHVDMLQTAELVHQSSTDA 288 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef-R~~~p~----y~---~l~~~G~~Dp~qaae~v~~eAtrl 288 (513)
.|+|.|+|||||||+++.|++. .++.+|++|.+ |+.... .. .....|...+ ...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~-------~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~-----------~~~ 63 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK-------YGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP-----------DEV 63 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH-------SSCCEEEHHHHHHHHHHTTCHHHHHHHHHHTTTCCCC-----------HHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH-------hCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCC-----------HHH
Confidence 3788999999999999999876 36778988665 432210 00 0111111100 012
Q ss_pred HHHHHHHHHHC---CCcEEEECcCCChHHHHHHHHHHhhhhhcccccccccccccCCccccchhhhhhhhhhhhcccCCC
Q 044777 289 ASSLLVTALNE---GRDVIMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENYWDRIGEREQAQDGKMRK 365 (513)
Q Consensus 289 A~~li~~aL~~---GrsVIlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Yw~~v~~a~~~~~~~~~~ 365 (513)
...++...+.. +..+|+|+..........+.+.+.. .
T Consensus 64 ~~~~~~~~l~~~~~~~~~ildg~p~~~~~~~~~~~~~~~----------------------------------------~ 103 (216)
T 3dl0_A 64 TIGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEE----------------------------------------M 103 (216)
T ss_dssp HHHHHHHHHTSGGGTTCEEEESCCCSHHHHHHHHHHHHH----------------------------------------T
T ss_pred HHHHHHHHHhcccccCCEEEeCCCCCHHHHHHHHHHHHH----------------------------------------c
Confidence 22334444443 8899999977776555444432211 1
Q ss_pred CeEE-EEEEEecChHHHHHHHHHHHH----------------------------hcCCcCchhHHHHHHHHHHHHHHHhh
Q 044777 366 PYRI-ELVGVVCDAYLAVVRGIRRAI----------------------------MCRRAVRVKSQLKSHKRFANAFLTYC 416 (513)
Q Consensus 366 gYrI-~Lv~V~~dpelAv~Rv~~Rv~----------------------------~gGh~VP~~~il~r~~rf~~nf~~~~ 416 (513)
|..+ .++++.+|++..++|...|.. .+......+.+.+|...+........
T Consensus 104 ~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~r~~d~~e~i~~rl~~~~~~~~~~~ 183 (216)
T 3dl0_A 104 GKPIDYVINIQVDKDVLMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVTKRLEVNMKQTAPLL 183 (216)
T ss_dssp TCCCSEEEEEECCGGGHHHHHHTEEEETTTCCEEETTTBCCSSTTBCTTTCCBEECCTTCSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEECCHHHHHHHHHCCCcCCccCCccccccCCCcccCccccccccccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 1122 357778999999999998821 11123445677777766665544322
Q ss_pred ---cccceEEEEecCC
Q 044777 417 ---QLVDSARLYSTNA 429 (513)
Q Consensus 417 ---~lvD~a~lyDNs~ 429 (513)
...+.++..|++.
T Consensus 184 ~~~~~~~~~~~id~~~ 199 (216)
T 3dl0_A 184 DFYDEKGYLVNVNGQQ 199 (216)
T ss_dssp HHHHHHTCEEEEECSS
T ss_pred HHHHhcCCEEEEECCC
Confidence 2223466677654
No 28
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=98.87 E-value=1.2e-08 Score=94.94 Aligned_cols=155 Identities=10% Similarity=0.037 Sum_probs=87.6
Q ss_pred EEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc-ccchhh----hhh---hhccccCchhhHHHHHhHhHHHH
Q 044777 217 LLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF-KESDVI----YRA---LSSRSHVDMLQTAELVHQSSTDA 288 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef-R~~~p~----y~~---l~~~G~~Dp~qaae~v~~eAtrl 288 (513)
.|+|.|+|||||||+++.|++. .++.+|+.|.+ |+.... ... ....|...+ ..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~-------~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~-----------~~~ 63 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK-------YEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVP-----------DEV 63 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH-------HCCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCC-----------HHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH-------hCCcEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCC-----------HHH
Confidence 4788999999999999999876 35678888665 332110 000 000011100 012
Q ss_pred HHHHHHHHHHC---CCcEEEECcCCChHHHHHHHHHHhhhhhcccccccccccccCCccccchhhhhhhhhhhhcccCCC
Q 044777 289 ASSLLVTALNE---GRDVIMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENYWDRIGEREQAQDGKMRK 365 (513)
Q Consensus 289 A~~li~~aL~~---GrsVIlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Yw~~v~~a~~~~~~~~~~ 365 (513)
...++...+.+ +..+|+|+...+......+.+.+.. .
T Consensus 64 ~~~~~~~~l~~~~~~~~~ildg~p~~~~~~~~l~~~~~~----------------------------------------~ 103 (216)
T 3fb4_A 64 TIGIVHERLSKDDCQKGFLLDGFPRTVAQADALDSLLTD----------------------------------------L 103 (216)
T ss_dssp HHHHHHHHHTSGGGTTCEEEESCCCSHHHHHHHHHHHHH----------------------------------------T
T ss_pred HHHHHHHHHhcccCCCcEEEeCCCCCHHHHHHHHHHHHh----------------------------------------c
Confidence 22344444433 7899999977776555444332211 1
Q ss_pred CeEE-EEEEEecChHHHHHHHHHHHH----------------------------hcCCcCchhHHHHHHHHHHHHHHHhh
Q 044777 366 PYRI-ELVGVVCDAYLAVVRGIRRAI----------------------------MCRRAVRVKSQLKSHKRFANAFLTYC 416 (513)
Q Consensus 366 gYrI-~Lv~V~~dpelAv~Rv~~Rv~----------------------------~gGh~VP~~~il~r~~rf~~nf~~~~ 416 (513)
|..+ .++++.+|++..++|...|.. .+......+.+.++...+........
T Consensus 104 ~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~r~~d~~e~i~~rl~~~~~~~~~~~ 183 (216)
T 3fb4_A 104 GKKLDYVLNIKVEQEELMKRLTGRWICKTCGATYHTIFNPPAVEGICDKDGGELYQRIDDKPETVKNRLDVNMKQTQPLL 183 (216)
T ss_dssp TCCCSEEEEEECCHHHHHHHHHSEEEETTTCCEEETTTBCCSSTTBCTTTCCBEECCGGGSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEECCHHHHHHHHHcCCCCCccCCccccccCCCCcccccccccCccccCCCCCHHHHHHHHHHHHHhHHHHH
Confidence 1122 357778999999999998821 01123445667777766666544332
Q ss_pred ---cccceEEEEecCC
Q 044777 417 ---QLVDSARLYSTNA 429 (513)
Q Consensus 417 ---~lvD~a~lyDNs~ 429 (513)
.-.+.++..|++.
T Consensus 184 ~~~~~~~~~~~id~~~ 199 (216)
T 3fb4_A 184 DFYSQKGVLKDIDGQQ 199 (216)
T ss_dssp HHHHHTTCEEEEECSS
T ss_pred HHHHcCCcEEEEECCC
Confidence 2223456666654
No 29
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=98.84 E-value=2.1e-08 Score=91.58 Aligned_cols=123 Identities=10% Similarity=0.028 Sum_probs=74.3
Q ss_pred CCCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccccchhhhhhhhccccCchhhHHHHHhHhHHHHHHH
Q 044777 212 DRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKESDVIYRALSSRSHVDMLQTAELVHQSSTDAASS 291 (513)
Q Consensus 212 ~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~~~p~y~~l~~~G~~Dp~qaae~v~~eAtrlA~~ 291 (513)
..++.+|++.|+|||||||+++.|+.. ....+..+++++.|.++..+. ....+.+.+... .......
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~--l~~~~~~~~~~~~d~~~~~~~------~~~~~~~~~r~~-----~~~~~~~ 76 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADL--LQKEGYRVEVLDGDWARTTVS------EGAGFTREERLR-----HLKRIAW 76 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHH--HHHTTCCEEEEEHHHHHTTTT------TTCCCCHHHHHH-----HHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHH--HHhcCCeEEEeeHHHHHHHHh------hccCCChhhHHH-----HHHHHHH
Confidence 346789999999999999999999875 222344567899999965331 100111111000 0111112
Q ss_pred HHHHHHHCCCcEEEECcCCChHHHHHHHHHHhhhhhcccccccccccccCCccccchhhhhhhhhhhhcccCCCCeEEEE
Q 044777 292 LLVTALNEGRDVIMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENYWDRIGEREQAQDGKMRKPYRIEL 371 (513)
Q Consensus 292 li~~aL~~GrsVIlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Yw~~v~~a~~~~~~~~~~gYrI~L 371 (513)
....+++.|..||+|.+......+..+.+++. ..|....+
T Consensus 77 ~~~~~~~~g~~vi~d~~~~~~~~r~~~~~~~~----------------------------------------~~~~~~~~ 116 (186)
T 2yvu_A 77 IARLLARNGVIVICSFVSPYKQARNMVRRIVE----------------------------------------EEGIPFLE 116 (186)
T ss_dssp HHHHHHTTTCEEEEECCCCCHHHHHHHHHHHH----------------------------------------HTTCCEEE
T ss_pred HHHHHHhCCCEEEEeCccccHHHHHHHHHHhh----------------------------------------ccCCCeEE
Confidence 23344678989999998766554443332221 12233456
Q ss_pred EEEecChHHHHHHHHH
Q 044777 372 VGVVCDAYLAVVRGIR 387 (513)
Q Consensus 372 v~V~~dpelAv~Rv~~ 387 (513)
+++.+|++.+.+|...
T Consensus 117 v~L~~~~e~~~~R~~~ 132 (186)
T 2yvu_A 117 IYVKASLEEVIRRDPK 132 (186)
T ss_dssp EEEECCHHHHHHHCHH
T ss_pred EEEeCCHHHHHHhhhh
Confidence 7889999999999754
No 30
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.82 E-value=4.7e-09 Score=107.04 Aligned_cols=123 Identities=11% Similarity=0.201 Sum_probs=77.4
Q ss_pred hhhhhhcCCCCcchHHHHHHHHHHHHhhhhhhhccchhhHHHHHhhcCCCchhhhhHHHHHHHHHhHHH-HhhhhhhHHH
Q 044777 100 DIYTFFSSEPAADSLFIKLVEEFERCILSYFAFHWSHADLMISQVLNSDAEPKKKLKHIVMQATREQRF-ERVTKNLKVA 178 (513)
Q Consensus 100 ~i~~~~~~~~~~~~l~~~~~eele~~~~~~~~~~~~~~~~li~~~l~~~~~~~~~~~~~v~~a~r~~rf-~r~~~~~~v~ 178 (513)
++.+++++.+.++.-..++++|||+ .||++|++.+.. ..+++.+|+.-. +++.+.....
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~--------------~Ll~adv~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 96 (328)
T 3e70_C 37 GLLDRILTVEIKEKDVDKALDELEI--------------DLLEADVALEVV------DALREKIKQKLVGKKVRIGTDKG 96 (328)
T ss_dssp -----CCEEECCHHHHHHHHHHHHH--------------HHHHTTCCHHHH------HHHHHHHHHHHTTCEEECC---C
T ss_pred cHHHHHhhccCCHHHHHHHHHHHHH--------------HHHHcCCCHHHH------HHHHHHHHHHHhhcccCCccCHH
Confidence 4566666667677666799999999 999999997766 777888887522 2233333333
Q ss_pred HHHHH-HHHHHHHhcCCCCCCcccchhccccc--------CCCCCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeE
Q 044777 179 RVFTT-LVEEMKAMGLAPNDDSQCTEVMAPVA--------LGDRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAV 249 (513)
Q Consensus 179 r~~~~-~ve~~~~~~~~~~~~~~~~~vl~p~~--------~~~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aV 249 (513)
..+.. +.+|+..+ |.|.. ....+|.++.+.|+|||||||+++.|+.. +...++.+.
T Consensus 97 ~~~~~~l~~~l~~~-------------l~~~~~~~~~~~~~~~~~g~vi~lvG~nGaGKTTll~~Lag~--l~~~~g~V~ 161 (328)
T 3e70_C 97 KIIEEAVKEAVSEI-------------LETSRRIDLIEEIRKAEKPYVIMFVGFNGSGKTTTIAKLANW--LKNHGFSVV 161 (328)
T ss_dssp HHHHHHHHHHHHHH-------------SCCSSCCCHHHHHHSSCSSEEEEEECCTTSSHHHHHHHHHHH--HHHTTCCEE
T ss_pred HHHHHHHHHHHHHH-------------hCCccccchhhhcccCCCCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCEEE
Confidence 22222 22333222 22221 12357999999999999999999999864 333456667
Q ss_pred Eecccccc
Q 044777 250 VIEADAFK 257 (513)
Q Consensus 250 vInaDefR 257 (513)
++..|.++
T Consensus 162 l~g~D~~r 169 (328)
T 3e70_C 162 IAASDTFR 169 (328)
T ss_dssp EEEECCSS
T ss_pred EEeecccc
Confidence 77888876
No 31
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=98.79 E-value=1.7e-07 Score=84.64 Aligned_cols=88 Identities=18% Similarity=0.158 Sum_probs=47.2
Q ss_pred EEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccccc-hh-hhhhhhccccCchhhHHHHHhHhHHHHHHHHHH
Q 044777 217 LLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKES-DV-IYRALSSRSHVDMLQTAELVHQSSTDAASSLLV 294 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~~-~p-~y~~l~~~G~~Dp~qaae~v~~eAtrlA~~li~ 294 (513)
+|++.|++||||||+++.|.+. +.. .++.++++|+-... .. ........|..++....-....+........+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~--l~~--~g~~~i~~d~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~l~~~i~ 77 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY--LKQ--KGYFVSLYREPGGTKVGEVLREILLTEELDERTELLLFEASRSKLIEEKII 77 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH--HHH--TTCCEEEEESSCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH--HHH--CCCeEEEEeCCCCCchHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999885 111 14557777754211 00 011111113223211110111111122334556
Q ss_pred HHHHCCCcEEEECc
Q 044777 295 TALNEGRDVIMDGT 308 (513)
Q Consensus 295 ~aL~~GrsVIlDtT 308 (513)
.++.+|..||+|..
T Consensus 78 ~~l~~~~~vi~dr~ 91 (195)
T 2pbr_A 78 PDLKRDKVVILDRF 91 (195)
T ss_dssp HHHHTTCEEEEESC
T ss_pred HHHhCCCEEEECcc
Confidence 77889999999953
No 32
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.76 E-value=1e-07 Score=87.03 Aligned_cols=134 Identities=16% Similarity=0.099 Sum_probs=75.2
Q ss_pred cEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccccchhhhhhhhccccCchhhHHHHHhHhHHHHHHHHHH
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKESDVIYRALSSRSHVDMLQTAELVHQSSTDAASSLLV 294 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~~~p~y~~l~~~G~~Dp~qaae~v~~eAtrlA~~li~ 294 (513)
+.++++.|+|||||||+++.|+.. ..+.++++.|.+..... .|...+ ...........+.......
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~------~~g~~~i~~d~~~~~~~-------~~~~~~-~~~~~~~~~~~~~l~~~~~ 67 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQ------LDNSAYIEGDIINHMVV-------GGYRPP-WESDELLALTWKNITDLTV 67 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH------SSSEEEEEHHHHHTTCC-------TTCCCG-GGCHHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhcc------cCCeEEEcccchhhhhc-------cccccC-ccchhHHHHHHHHHHHHHH
Confidence 468899999999999999999874 14568999999854211 010000 0000000011122222334
Q ss_pred HHHHCCCcEEEECcCCChHHHHHHHHHHhhhhhcccccccccccccCCccccchhhhhhhhhhhhcccCCCCeEEEEEEE
Q 044777 295 TALNEGRDVIMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENYWDRIGEREQAQDGKMRKPYRIELVGV 374 (513)
Q Consensus 295 ~aL~~GrsVIlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Yw~~v~~a~~~~~~~~~~gYrI~Lv~V 374 (513)
..+..|.++|+|+++ .+...+.+.+.++. +..+.++.++++
T Consensus 68 ~~~~~~~~~ild~~~-~~~~~~~~~~~~~s--------------------------------------~g~~~~~~~i~L 108 (189)
T 2bdt_A 68 NFLLAQNDVVLDYIA-FPDEAEALAQTVQA--------------------------------------KVDDVEIRFIIL 108 (189)
T ss_dssp HHHHTTCEEEEESCC-CHHHHHHHHHHHHH--------------------------------------HCSSEEEEEEEE
T ss_pred HHHhcCCcEEEeecc-CHHHHHHHHHHHHh--------------------------------------cccCCCeEEEEE
Confidence 455688899999975 34333322221100 122345667778
Q ss_pred ecChHHHHHHHHHHHHhcCCcCchhHHHH
Q 044777 375 VCDAYLAVVRGIRRAIMCRRAVRVKSQLK 403 (513)
Q Consensus 375 ~~dpelAv~Rv~~Rv~~gGh~VP~~~il~ 403 (513)
.++++..+.|...|... +.+++..+..
T Consensus 109 ~~~~e~l~~R~~~r~~d--~~ld~~~~~~ 135 (189)
T 2bdt_A 109 WTNREELLRRDALRKKD--EQMGERCLEL 135 (189)
T ss_dssp ECCHHHHHHHTTTSCC------CGGGGHH
T ss_pred eCCHHHHHHHHHhcccc--ccCCHHHHHH
Confidence 89999999999887432 4455554444
No 33
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.76 E-value=2.7e-08 Score=105.69 Aligned_cols=122 Identities=14% Similarity=0.239 Sum_probs=80.9
Q ss_pred chhhhhhcCCCCcchHHHHHHHHHHHHhhhhhhhccchhhHHHHHhhcCCCchhhhhHHHHHHHHHhH-HHHhhhh----
Q 044777 99 DDIYTFFSSEPAADSLFIKLVEEFERCILSYFAFHWSHADLMISQVLNSDAEPKKKLKHIVMQATREQ-RFERVTK---- 173 (513)
Q Consensus 99 ~~i~~~~~~~~~~~~l~~~~~eele~~~~~~~~~~~~~~~~li~~~l~~~~~~~~~~~~~v~~a~r~~-rf~r~~~---- 173 (513)
..+..+.++.+.+++-..++++|+++ .||.++.+.+.. ..+.+.+++. .-+++.+
T Consensus 12 ~~~~~l~~~~~l~e~~~~~~l~ei~~--------------~Ll~adv~~~~~------~~~~~~v~~~~~~~~v~~~~~~ 71 (443)
T 3dm5_A 12 NTLKKIARASSVDEALIKELVRDIQR--------------ALIQADVNVRLV------LQLTREIQRRALEEKPPAGISK 71 (443)
T ss_dssp HHHHHHHHCSCCCHHHHHHHHHHHHH--------------HHHHTTCCHHHH------HHHHHHHHHHHHHCCCCTTCCH
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHH--------------HHHHcCCChHHH------HHHHHHHHHHHhhccccccCCc
Confidence 34455666677788888899999999 999999887766 4455555553 2223322
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCCCCcccchhcccc---cCCCCCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEE
Q 044777 174 NLKVARVFTTLVEEMKAMGLAPNDDSQCTEVMAPV---ALGDRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVV 250 (513)
Q Consensus 174 ~~~v~r~~~~~ve~~~~~~~~~~~~~~~~~vl~p~---~~~~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVv 250 (513)
...+.+.+.+.+ .++ |.+. .....+|.+++++|+||+||||++..|+.. +...+..+.+
T Consensus 72 ~~~v~~~l~~eL---~~~-------------L~~~~~~~~~~~~p~vIlivG~~G~GKTTt~~kLA~~--l~~~G~kVll 133 (443)
T 3dm5_A 72 KEHIIKIVYEEL---TKF-------------LGTEAKPIEIKEKPTILLMVGIQGSGKTTTVAKLARY--FQKRGYKVGV 133 (443)
T ss_dssp HHHHHHHHHHHH---HHH-------------TTSSCCCCCCCSSSEEEEEECCTTSSHHHHHHHHHHH--HHTTTCCEEE
T ss_pred HHHHHHHHHHHH---HHH-------------hcCcccccccCCCCeEEEEECcCCCCHHHHHHHHHHH--HHHCCCeEEE
Confidence 233444444433 332 2220 111236999999999999999999999864 4445667889
Q ss_pred eccccccc
Q 044777 251 IEADAFKE 258 (513)
Q Consensus 251 InaDefR~ 258 (513)
+++|.+|.
T Consensus 134 v~~D~~R~ 141 (443)
T 3dm5_A 134 VCSDTWRP 141 (443)
T ss_dssp EECCCSST
T ss_pred EeCCCcch
Confidence 99999974
No 34
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.76 E-value=8.3e-08 Score=101.24 Aligned_cols=107 Identities=14% Similarity=0.083 Sum_probs=63.0
Q ss_pred CCCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccccchhhhhhhhccccCchhh-HHHHHhHhHHHHHH
Q 044777 212 DRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKESDVIYRALSSRSHVDMLQ-TAELVHQSSTDAAS 290 (513)
Q Consensus 212 ~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~~~p~y~~l~~~G~~Dp~q-aae~v~~eAtrlA~ 290 (513)
..+|.+|+|.|.|||||||+++.|++..+|. ..+...++.|.++..... .......+|+.. ............+.
T Consensus 36 ~~~~~~IvlvGlpGsGKSTia~~La~~l~~~--~~~t~~~~~d~~r~~~~g--~~~~~~ifd~~g~~~~r~re~~~~~~l 111 (469)
T 1bif_A 36 TNCPTLIVMVGLPARGKTYISKKLTRYLNFI--GVPTREFNVGQYRRDMVK--TYKSFEFFLPDNEEGLKIRKQCALAAL 111 (469)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEEEHHHHHHHHHC--SCCCGGGGCTTCHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHhcc--CCCceEEecchhhhhhcc--CCCcccccCCCCHHHHHHHHHHHHHHH
Confidence 3578899999999999999999998864443 356778888888754210 000001112110 00000011111111
Q ss_pred HHHHHHH--HCCCcEEEECcCCChHHHHHHHHHH
Q 044777 291 SLLVTAL--NEGRDVIMDGTLSWVPFVVQTITMA 322 (513)
Q Consensus 291 ~li~~aL--~~GrsVIlDtTlS~~~~~~qii~~A 322 (513)
..+...+ ..|..||+|+|+.....++.+.+.+
T Consensus 112 ~~~~~~l~~~~G~~vV~D~tn~~~~~R~~~~~~~ 145 (469)
T 1bif_A 112 NDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFG 145 (469)
T ss_dssp HHHHHHHHTTCCSEEEEESCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCEEEEeCCCCCHHHHHHHHHHH
Confidence 1224455 5688999999999988888776655
No 35
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=98.73 E-value=4.7e-08 Score=95.12 Aligned_cols=137 Identities=15% Similarity=0.137 Sum_probs=80.3
Q ss_pred EEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccccch--------hhhhhhhccc-cC----chhhHHHHHh
Q 044777 216 VLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKESD--------VIYRALSSRS-HV----DMLQTAELVH 282 (513)
Q Consensus 216 ~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~~~--------p~y~~l~~~G-~~----Dp~qaae~v~ 282 (513)
.+|+|+|+|||||||+++.|++. .++.+|+.|.+...- |...+....+ ++ +|.+ ..+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~-------~~~~~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~-~~~~~ 73 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQE-------TGWPVVALDRVQCCPQIATGSGRPLESELQSTRRIYLDSRPLTE-GILDA 73 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH-------HCCCEEECCSGGGCGGGTTTTTCCCGGGGTTCCEECSCCCCGGG-CSCCH
T ss_pred eEEEEECCCCcCHHHHHHHHHhc-------CCCeEEeccHHhccCCCccccCCCCHHHHhCCCeEEEeeecccc-ccccH
Confidence 47899999999999999999986 356789999874210 0000000000 00 1110 00100
Q ss_pred HhHHHHHHHHHHHHHHCCCcEEEECcCCChHHHHHHHHHHhhhhhcccccccccccccCCccccchhhhhhhhhhhhccc
Q 044777 283 QSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENYWDRIGEREQAQDGK 362 (513)
Q Consensus 283 ~eAtrlA~~li~~aL~~GrsVIlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Yw~~v~~a~~~~~~~ 362 (513)
..-.+.+...+ +++..|.++|+++.+. .+.+.++. . .||
T Consensus 74 ~~f~~~~~~~i-~~~~~g~~vIl~gg~~--~~~~~~~~---~----------------------~~~------------- 112 (253)
T 2ze6_A 74 ESAHRRLIFEV-DWRKSEEGLILEGGSI--SLLNCMAK---S----------------------PFW------------- 112 (253)
T ss_dssp HHHHHHHHHHH-HTTTTSSEEEEEECCH--HHHHHHHH---C----------------------TTT-------------
T ss_pred HHHHHHHHHHH-HHHhCCCCeEEeccHH--HHHHHHHh---c----------------------ccc-------------
Confidence 11112334444 5668899999986542 23332211 0 112
Q ss_pred CCCCeEEEEEEEecCh-HHHHHHHHHHHHh--cCCcCchhHHH
Q 044777 363 MRKPYRIELVGVVCDA-YLAVVRGIRRAIM--CRRAVRVKSQL 402 (513)
Q Consensus 363 ~~~gYrI~Lv~V~~dp-elAv~Rv~~Rv~~--gGh~VP~~~il 402 (513)
..|+.+.++++.++. +....|...|... .+++++...+.
T Consensus 113 -~~~~~~~~i~l~~~~~e~l~~Rl~~R~~~ml~~~~~~~~~l~ 154 (253)
T 2ze6_A 113 -RSGFQWHVKRLRLGDSDAFLTRAKQRVAEMFAIREDRPSLLE 154 (253)
T ss_dssp -TSSCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCSSSCCHHH
T ss_pred -cccCceEEEEecchhHHHHHHHHHHHHHHHHhcCcccchHHH
Confidence 146677788888886 9999999999876 67777765443
No 36
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=98.72 E-value=2.4e-07 Score=82.07 Aligned_cols=34 Identities=29% Similarity=0.333 Sum_probs=29.5
Q ss_pred EEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccc
Q 044777 217 LLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFK 257 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR 257 (513)
+|++.|+|||||||+++.|++. .++.+++.|.+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~-------l~~~~i~~d~~~ 36 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE-------LKYPIIKGSSFE 36 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH-------HCCCEEECCCHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH-------hCCeeecCcccc
Confidence 7899999999999999999886 356689999883
No 37
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=98.71 E-value=9.1e-08 Score=90.72 Aligned_cols=115 Identities=16% Similarity=0.134 Sum_probs=69.6
Q ss_pred EEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc-ccchhh---hh----hhhccccCchhhHHHHHhHhHHHH
Q 044777 217 LLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF-KESDVI---YR----ALSSRSHVDMLQTAELVHQSSTDA 288 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef-R~~~p~---y~----~l~~~G~~Dp~qaae~v~~eAtrl 288 (513)
+|++.|+|||||||+++.|++. .+..+|++|++ |+..+. .. .....|...+ ...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~-------lg~~~i~~dd~~r~~~~~~~~~g~~i~~~~~~g~~~~-----------~~~ 63 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK-------YSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVP-----------DDI 63 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH-------HTCEEEEHHHHHHHHTTTTCHHHHHHHHHHTTTCCCC-----------HHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH-------hCCeEEchHHHHHHHHHcCCHHHHHHHHHHHcCCcCc-----------HHH
Confidence 5899999999999999999886 25678888765 432111 00 0011111100 123
Q ss_pred HHHHHHHHHHC--CCcEEEECcCCChHHHHHHHHHHhhhhhcccccccccccccCCccccchhhhhhhhhhhhcccCCCC
Q 044777 289 ASSLLVTALNE--GRDVIMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENYWDRIGEREQAQDGKMRKP 366 (513)
Q Consensus 289 A~~li~~aL~~--GrsVIlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Yw~~v~~a~~~~~~~~~~g 366 (513)
...++..++.+ |..||+|+...+..+...+.+.+.. .|
T Consensus 64 ~~~~i~~~l~~~~g~~vIlDg~~~~~~~~~~l~~~~~~----------------------------------------~~ 103 (223)
T 2xb4_A 64 TIPMVLETLESKGKDGWLLDGFPRNTVQAQKLFEALQE----------------------------------------KG 103 (223)
T ss_dssp HHHHHHHHHHHHCTTCEEEESCCCSHHHHHHHHHHHHH----------------------------------------TT
T ss_pred HHHHHHHHHhcccCCeEEEeCCcCCHHHHHHHHHHHHh----------------------------------------cC
Confidence 34456666666 9999999876664444333221100 11
Q ss_pred eEE-EEEEEecChHHHHHHHHHHH
Q 044777 367 YRI-ELVGVVCDAYLAVVRGIRRA 389 (513)
Q Consensus 367 YrI-~Lv~V~~dpelAv~Rv~~Rv 389 (513)
... .++++.+|++.+++|+..|.
T Consensus 104 ~~~d~vi~l~~~~e~~~~Rl~~R~ 127 (223)
T 2xb4_A 104 MKINFVIEILLPREVAKNRIMGRR 127 (223)
T ss_dssp CCCCEEEEEECCHHHHHHHHHTBC
T ss_pred CCCCEEEEEECCHHHHHHHHHccc
Confidence 111 34677899999999999884
No 38
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.69 E-value=1.6e-07 Score=85.56 Aligned_cols=150 Identities=20% Similarity=0.131 Sum_probs=94.4
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccccchhhhhhhhccccCchhhHHHHHhHhHHHHHHHHH
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKESDVIYRALSSRSHVDMLQTAELVHQSSTDAASSLL 293 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~~~p~y~~l~~~G~~Dp~qaae~v~~eAtrlA~~li 293 (513)
++.++.|.|+|||||||+++.+.. +..+++.|.++...+.. + | +. .......+......
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~~---------~~~~~~~d~~~g~~~~~----~-~--~~-----~~~~~~~~~~~~~~ 66 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHFK---------PTEVISSDFCRGLMSDD----E-N--DQ-----TVTGAAFDVLHYIV 66 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHSC---------GGGEEEHHHHHHHHCSS----T-T--CG-----GGHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHcc---------CCeEEccHHHHHHhcCc----c-c--ch-----hhHHHHHHHHHHHH
Confidence 578999999999999999998653 23468888886432210 0 1 10 01111112223345
Q ss_pred HHHHHCCCcEEEECcCCChHHHHHHHHHHhhhhhcccccccccccccCCccccchhhhhhhhhhhhcccCCCCeEEEEEE
Q 044777 294 VTALNEGRDVIMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENYWDRIGEREQAQDGKMRKPYRIELVG 373 (513)
Q Consensus 294 ~~aL~~GrsVIlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Yw~~v~~a~~~~~~~~~~gYrI~Lv~ 373 (513)
...+..|..+++|.++......+|.+.+|+++ .....++.
T Consensus 67 ~~~~~~g~~~~~~~~~~~s~g~~qrv~iAral----------------------------------------~~~p~~ll 106 (171)
T 4gp7_A 67 SKRLQLGKLTVVDATNVQESARKPLIEMAKDY----------------------------------------HCFPVAVV 106 (171)
T ss_dssp HHHHHTTCCEEEESCCCSHHHHHHHHHHHHHT----------------------------------------TCEEEEEE
T ss_pred HHHHhCCCeEEEECCCCCHHHHHHHHHHHHHc----------------------------------------CCcEEEEE
Confidence 56678899999999999988888888888763 12234555
Q ss_pred EecChHHHHHHHHHHHHhcCCcCchhHHHHHHHHHHHHHHHhhcccceEEEEecC
Q 044777 374 VVCDAYLAVVRGIRRAIMCRRAVRVKSQLKSHKRFANAFLTYCQLVDSARLYSTN 428 (513)
Q Consensus 374 V~~dpelAv~Rv~~Rv~~gGh~VP~~~il~r~~rf~~nf~~~~~lvD~a~lyDNs 428 (513)
+..|..-.-.|...|. ++.+|.+.+.+....+.+.+.....- ...+|+-+.
T Consensus 107 lDEPt~~Ld~~~~~R~---~~~~~~~vi~~~~~~l~~~l~~l~~~-g~tvi~vtH 157 (171)
T 4gp7_A 107 FNLPEKVCQERNKNRT---DRQVEEYVIRKHTQQMKKSIKGLQRE-GFRYVYILN 157 (171)
T ss_dssp ECCCHHHHHHHHHTCS---SCCCCHHHHHHHHHHHHHHSTTHHHH-TCSEEEEEC
T ss_pred EeCCHHHHHHHHhccc---CCCCCHHHHHHHHHHhhhhhhhHHhc-CCcEEEEeC
Confidence 5444444445566554 46999999988888777765544332 334444443
No 39
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=98.68 E-value=8.4e-08 Score=94.83 Aligned_cols=38 Identities=26% Similarity=0.350 Sum_probs=32.4
Q ss_pred CCCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccc
Q 044777 212 DRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFK 257 (513)
Q Consensus 212 ~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR 257 (513)
..+|.+|.|.|++||||||+++.|... ++.+|++|.+.
T Consensus 72 ~~~~~iI~I~G~~GSGKSTva~~La~l--------g~~~id~D~~~ 109 (281)
T 2f6r_A 72 PSGLYVLGLTGISGSGKSSVAQRLKNL--------GAYIIDSDHLG 109 (281)
T ss_dssp CTTCEEEEEEECTTSCHHHHHHHHHHH--------TCEEEEHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHC--------CCcEEehhHHH
Confidence 356899999999999999999999842 56789999883
No 40
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=98.68 E-value=1.1e-07 Score=91.57 Aligned_cols=37 Identities=16% Similarity=0.171 Sum_probs=31.7
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
.+|.+|+|.|+|||||||+++.|++. .+..+|++|++
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~-------~g~~~is~~~~ 63 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKS-------HCYCHLSTGDL 63 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHH-------HCCEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH-------hCCeEEecHHH
Confidence 36889999999999999999999886 36788988665
No 41
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=98.68 E-value=5.2e-08 Score=90.72 Aligned_cols=152 Identities=14% Similarity=0.088 Sum_probs=83.6
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcc--c--------------ccCCCCeEEecccccccchhhhhhhhccccC-c-h
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPF--W--------------AGAAGNAVVIEADAFKESDVIYRALSSRSHV-D-M 274 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f--~--------------~~~~~~aVvInaDefR~~~p~y~~l~~~G~~-D-p 274 (513)
.++.+++++|+|||||||+++.|.+..- + +..+.+..+++.|.|.+... .|.+ . .
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~~-------~~~~~~~~ 82 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLK-------EGQFLEFD 82 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHH-------TTCEEEEE
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHHH-------cCCCEEeH
Confidence 4677999999999999999999987510 0 00112455666666643211 0111 0 0
Q ss_pred hhHHHHHhHhHHHHHHHHHHHHHHCCCcEEEECcCCChHHHHHHHHHHhhhhhcccccccccccccCCccccchhhhhhh
Q 044777 275 LQTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENYWDRIGE 354 (513)
Q Consensus 275 ~qaae~v~~eAtrlA~~li~~aL~~GrsVIlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Yw~~v~~ 354 (513)
......+ .. ....+..++++|.+||+|.++... .++ ++
T Consensus 83 ~~~~~~~---~~--~~~~i~~~l~~g~~vi~d~~~~~~---~~l----~~------------------------------ 120 (204)
T 2qor_A 83 KYANNFY---GT--LKSEYDLAVGEGKICLFEMNINGV---KQL----KE------------------------------ 120 (204)
T ss_dssp EETTEEE---EE--EHHHHHHHHHTTCEEEEECCHHHH---HHH----HH------------------------------
T ss_pred HhCCCee---cC--CHHHHHHHHHcCCeEEEEECHHHH---HHH----HH------------------------------
Confidence 0000000 00 012345677899999999866331 111 10
Q ss_pred hhhhhcccCCCCeEEEEEEEe-cChHHHHHHHHHHHHhcCCcCchhHHHHHHHHHHHHHHH-hhcccceEEEEecC
Q 044777 355 REQAQDGKMRKPYRIELVGVV-CDAYLAVVRGIRRAIMCRRAVRVKSQLKSHKRFANAFLT-YCQLVDSARLYSTN 428 (513)
Q Consensus 355 a~~~~~~~~~~gYrI~Lv~V~-~dpelAv~Rv~~Rv~~gGh~VP~~~il~r~~rf~~nf~~-~~~lvD~a~lyDNs 428 (513)
.-....+.++++. +|++...+|...| |+. +.+.+.++..+....+.. |...+|.+ .+|+
T Consensus 121 --------~~~~~~~~~i~l~~~s~e~l~~Rl~~R----~~~-~~~~i~~rl~~~~~~~~~~~~~~~d~v--i~n~ 181 (204)
T 2qor_A 121 --------SKHIQDGIYIFVKPPSIDILLGRLKNR----NTE-KPEEINKRMQELTREMDEADKVGFNYF--IVND 181 (204)
T ss_dssp --------CSSCSCCEEEEEECSCHHHHHHHHHTC----TTS-CHHHHHHHHHHHHHHHHHHHHHTCSEE--EECS
T ss_pred --------hcCCCCeEEEEEcCCCHHHHHHHHHHc----CCC-CHHHHHHHHHHHHHHHHHhhhccCcEE--EECc
Confidence 0000023567786 8999999988766 333 446666666555444443 66777874 4454
No 42
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=98.67 E-value=4.4e-08 Score=91.86 Aligned_cols=36 Identities=19% Similarity=0.279 Sum_probs=30.7
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
+|.+|++.|+|||||||+++.|++. .+..+|+.|++
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~-------l~~~~i~~d~~ 38 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQER-------FHAAHLATGDM 38 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH-------HCCEEEEHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH-------cCceEEehhHH
Confidence 4678999999999999999999886 35678998665
No 43
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.66 E-value=1.9e-08 Score=101.38 Aligned_cols=134 Identities=15% Similarity=0.214 Sum_probs=68.5
Q ss_pred HHHHHHHHhhccCccchhhhhhcCCCCcchHHHHHHHHHHHHhhhhhhhccchhhHHHHHhhcCCCchhhhhHHHHHHHH
Q 044777 84 CKLAAEYIRKSEGCEDDIYTFFSSEPAADSLFIKLVEEFERCILSYFAFHWSHADLMISQVLNSDAEPKKKLKHIVMQAT 163 (513)
Q Consensus 84 ~~l~~~~l~~s~~~~~~i~~~~~~~~~~~~l~~~~~eele~~~~~~~~~~~~~~~~li~~~l~~~~~~~~~~~~~v~~a~ 163 (513)
.+|..++-++.+++...+. |++ + + .+.++|||+ .||.++++.+.. ..+++.+
T Consensus 5 ~~l~~~l~~~~~~~~~~~~--~~~-~----~-~~~~~~l~~--------------~L~~~dv~~~~~------~~~~~~~ 56 (304)
T 1rj9_A 5 DRLKAGLAKTRERLLKAIP--WGG-N----L-EEVLEELEM--------------ALLAADVGLSAT------EEILQEV 56 (304)
T ss_dssp -------------------------C----H-HHHHHHHHH--------------HHHHTTCCHHHH------HHHHHHH
T ss_pred HHHHHHHHHHHHHhhcccc--cch-h----h-HHHHHHHHH--------------HHHHcCCCHHHH------HHHHHHH
Confidence 4667776666666665555 444 3 6 788899999 999999997776 7777777
Q ss_pred HhHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCCCCcccchhcccc----cCCCCCcEEEEEecCCCCchHHHHHHHhcCc
Q 044777 164 REQRFERVTKNLKVARVFTTLVEEMKAMGLAPNDDSQCTEVMAPV----ALGDRSPVLLFMGGGMGAGKSTVLKDILKEP 239 (513)
Q Consensus 164 r~~rf~r~~~~~~v~r~~~~~ve~~~~~~~~~~~~~~~~~vl~p~----~~~~~~P~LILmaG~pGAGKSTla~~Ll~~~ 239 (513)
++.- . ..+.+.+.+.+ ..+= .+....+-..-+... .++..+|.++.|.|+|||||||+++.|+..
T Consensus 57 ~~~~----~--~~~~~~~~~~l---~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~g~vi~lvG~nGsGKTTll~~Lagl- 125 (304)
T 1rj9_A 57 RASG----R--KDLKEAVKEKL---VGML-EPDERRATLRKLGFNPQKPKPVEPKGRVVLVVGVNGVGKTTTIAKLGRY- 125 (304)
T ss_dssp HHTC----C--SSTTHHHHHHH---TTTT-CTTCHHHHHHHTTCCCCCCCCCCCSSSEEEEECSTTSSHHHHHHHHHHH-
T ss_pred HHHH----H--HHHHHHHHHHH---HHHh-CcccccccccccccccccccccCCCCeEEEEECCCCCcHHHHHHHHHHH-
Confidence 6631 1 34445555444 2210 000000000001100 112346889999999999999999999864
Q ss_pred ccccCCCCeEEecccccc
Q 044777 240 FWAGAAGNAVVIEADAFK 257 (513)
Q Consensus 240 f~~~~~~~aVvInaDefR 257 (513)
+...++.+.+...|.++
T Consensus 126 -l~~~~g~V~l~g~D~~r 142 (304)
T 1rj9_A 126 -YQNLGKKVMFCAGDTFR 142 (304)
T ss_dssp -HHTTTCCEEEECCCCSS
T ss_pred -HHhcCCEEEEEeecCCC
Confidence 33345666677888775
No 44
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=98.62 E-value=2.1e-07 Score=87.54 Aligned_cols=35 Identities=26% Similarity=0.226 Sum_probs=29.7
Q ss_pred cEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
+..|++.|+|||||||+++.|++. .+..+|+.|++
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~-------l~~~~i~~d~l 39 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKE-------YGLAHLSTGDM 39 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH-------HCCEEEEHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH-------hCceEEehhHH
Confidence 457889999999999999999886 36788998765
No 45
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.59 E-value=8.5e-07 Score=82.14 Aligned_cols=37 Identities=35% Similarity=0.474 Sum_probs=31.5
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFK 257 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR 257 (513)
++..|++.|+|||||||+++.|++. .+..+++.|.+.
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~-------l~~~~i~~d~~~ 60 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARK-------LNVPFIDLDWYI 60 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH-------HTCCEEEHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH-------cCCCEEcchHHH
Confidence 4568999999999999999999986 356789999874
No 46
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=98.58 E-value=1.9e-07 Score=90.16 Aligned_cols=140 Identities=16% Similarity=0.184 Sum_probs=79.4
Q ss_pred CCCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecc-cccccchhh----h---hhhhccccCchhhHHHHHhH
Q 044777 212 DRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEA-DAFKESDVI----Y---RALSSRSHVDMLQTAELVHQ 283 (513)
Q Consensus 212 ~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvIna-DefR~~~p~----y---~~l~~~G~~Dp~qaae~v~~ 283 (513)
..+|.+|+|-|||||||||.++.|++. .++++|++ |.+|+.... . ......|. ++..
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~-------~g~~hIstGdllR~~i~~~t~lg~~~~~~~~~G~--------lVpd 90 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQK-------FHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGE--------LVPL 90 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHH-------HCCEEECHHHHHHHHHTTCCHHHHHHHHHHHHTC--------CCCH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH-------HCCceEcHHHHHHHHHHcCCchHHHHHHHHhcCC--------CCCH
Confidence 457899999999999999999999987 47889976 556643210 0 00001111 1111
Q ss_pred hHHHHHHHHHHHHH----HCCCcEEEECcCCChHHHHHHHHHHhhhhhcccccccccccccCCccccchhhhhhhhhhhh
Q 044777 284 SSTDAASSLLVTAL----NEGRDVIMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENYWDRIGEREQAQ 359 (513)
Q Consensus 284 eAtrlA~~li~~aL----~~GrsVIlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Yw~~v~~a~~~~ 359 (513)
.+...++...+ .....||+|+--++......+.+..
T Consensus 91 ---e~~~~lv~~~l~~~~~~~~g~ilDGfPRt~~Qa~~l~~~~------------------------------------- 130 (217)
T 3umf_A 91 ---EVVLALLKEAMIKLVDKNCHFLIDGYPRELDQGIKFEKEV------------------------------------- 130 (217)
T ss_dssp ---HHHHHHHHHHHHHHTTTCSEEEEETBCSSHHHHHHHHHHT-------------------------------------
T ss_pred ---HHHHHHHHHHHhhccccccCcccccCCCcHHHHHHHHHhC-------------------------------------
Confidence 22233333333 3455799999666643322221100
Q ss_pred cccCCCCeEEEEEEEecChHHHHHHHHHHHHhcCCcC-chhHHHHHHHHHHHHH
Q 044777 360 DGKMRKPYRIELVGVVCDAYLAVVRGIRRAIMCRRAV-RVKSQLKSHKRFANAF 412 (513)
Q Consensus 360 ~~~~~~gYrI~Lv~V~~dpelAv~Rv~~Rv~~gGh~V-P~~~il~r~~rf~~nf 412 (513)
..+. .++.+.++.+..++|...|....+|.. .++.+.+|++-+.+.-
T Consensus 131 ----~~~~--~vi~l~v~~e~~~~Rl~~R~~~~~R~DD~~e~i~~Rl~~Y~~~t 178 (217)
T 3umf_A 131 ----CPCL--CVINFDVSEEVMRKRLLKRAETSNRVDDNEETIVKRFRTFNELT 178 (217)
T ss_dssp ----CCCS--EEEEEECCHHHHHHHHSCC------CHHHHHHHHHHHHHHHHHT
T ss_pred ----CccC--EEEeccCCHHHHHHHHhcccccCCCCCCCHHHHHHHHHHHHHHH
Confidence 0111 245667999999999999987777753 3566777776666553
No 47
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=98.57 E-value=3.9e-07 Score=85.17 Aligned_cols=83 Identities=11% Similarity=0.071 Sum_probs=51.5
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccc-cCCCCeEEecccccccchhhhhhhhccccCchhhHHHHHhHhHHHHHHH
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWA-GAAGNAVVIEADAFKESDVIYRALSSRSHVDMLQTAELVHQSSTDAASS 291 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~-~~~~~aVvInaDefR~~~p~y~~l~~~G~~Dp~qaae~v~~eAtrlA~~ 291 (513)
.++.+|++.|+|||||||+++.|... +. ..+...++++.|.++..+.. .. .+.. ... ....+....
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~--l~~~~g~~~~~~~~d~~r~~l~~-----~~-~~~~---~~r--~~~~~~~~~ 89 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQ--LVRDRRVHAYRLDGDNIRFGLNK-----DL-GFSE---ADR--NENIRRIAE 89 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHH--HHHHHCCCEEEECHHHHTTTTTT-----TC-CSSH---HHH--HHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH--hccccCCcEEEECChHHhhhhcc-----cc-CCCH---HHH--HHHHHHHHH
Confidence 35789999999999999999999875 21 12334889999998753311 00 1110 000 011111223
Q ss_pred HHHHHHHCCCcEEEECc
Q 044777 292 LLVTALNEGRDVIMDGT 308 (513)
Q Consensus 292 li~~aL~~GrsVIlDtT 308 (513)
.+..+++.|..||+|.+
T Consensus 90 ~~~~~l~~g~~VI~d~~ 106 (211)
T 1m7g_A 90 VAKLFADSNSIAITSFI 106 (211)
T ss_dssp HHHHHHHTTCEEEEECC
T ss_pred HHHHHHHCCCEEEEecC
Confidence 45577889999999954
No 48
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=98.57 E-value=1.1e-06 Score=79.75 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=20.4
Q ss_pred EEEEecCCCCchHHHHHHHhcC
Q 044777 217 LLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~ 238 (513)
+|++.|++||||||+++.|.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999875
No 49
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.56 E-value=3.5e-07 Score=84.53 Aligned_cols=35 Identities=23% Similarity=0.445 Sum_probs=29.6
Q ss_pred cEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccc
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFK 257 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR 257 (513)
+.++.+.|+|||||||+++.|+.. +..++++|.+.
T Consensus 2 ~~~i~l~G~~GsGKST~~~~La~l--------g~~~id~d~~~ 36 (206)
T 1jjv_A 2 TYIVGLTGGIGSGKTTIANLFTDL--------GVPLVDADVVA 36 (206)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHTT--------TCCEEEHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHC--------CCcccchHHHH
Confidence 467899999999999999999763 56689999874
No 50
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=98.55 E-value=6.8e-07 Score=80.89 Aligned_cols=38 Identities=26% Similarity=0.355 Sum_probs=32.3
Q ss_pred cEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccccc
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKES 259 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~~ 259 (513)
+..|++.|+|||||||+++.|++. .++.+|+.|.+...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~-------l~~~~i~~d~~~~~ 42 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKL-------TKRILYDSDKEIEK 42 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH-------HCCCEEEHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH-------hCCCEEEChHHHHH
Confidence 567889999999999999999986 36679999998543
No 51
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.55 E-value=5.6e-07 Score=83.45 Aligned_cols=118 Identities=10% Similarity=0.031 Sum_probs=72.7
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccccchhhhhhhhccccCchhhHHHHHhHhHHHHHHHH
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKESDVIYRALSSRSHVDMLQTAELVHQSSTDAASSL 292 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~~~p~y~~l~~~G~~Dp~qaae~v~~eAtrlA~~l 292 (513)
.++.++.|.|+|||||||+++.|+.... ..+.-.++++.|.++.... ..-.+.+.... ........+
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~--~~G~~~~~~d~d~~~~~~~------~~~~~~~~~~~-----~~~~~~~~~ 89 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLY--QKGKLCYILDGDNVRHGLN------RDLSFKAEDRA-----ENIRRVGEV 89 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEEHHHHTTTTT------TTCCSSHHHHH-----HHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH--hcCceEEEecCchhhhHhh------cccCcChHHHH-----HHHHHHHHH
Confidence 4688999999999999999999987621 1122234899999865321 10011111100 111122234
Q ss_pred HHHHHHCCCcEEEECcCCChHHHHHHHHHHhhhhhcccccccccccccCCccccchhhhhhhhhhhhcccCCCCeEEEEE
Q 044777 293 LVTALNEGRDVIMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENYWDRIGEREQAQDGKMRKPYRIELV 372 (513)
Q Consensus 293 i~~aL~~GrsVIlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Yw~~v~~a~~~~~~~~~~gYrI~Lv 372 (513)
.......|..+|...+...+..+..+.+.+ .+..+..+
T Consensus 90 ~~~~~~~~~~vi~~~~~~~~~~r~~~~~~~------------------------------------------~~~~~~~v 127 (200)
T 3uie_A 90 AKLFADAGIICIASLISPYRTDRDACRSLL------------------------------------------PEGDFVEV 127 (200)
T ss_dssp HHHHHHTTCEEEEECCCCCHHHHHHHHHTS------------------------------------------CTTSEEEE
T ss_pred HHHHHhCCceEEEecCCchHHHHHHHHHhc------------------------------------------CCCCEEEE
Confidence 455567899999888777766655443211 12335668
Q ss_pred EEecChHHHHHHH
Q 044777 373 GVVCDAYLAVVRG 385 (513)
Q Consensus 373 ~V~~dpelAv~Rv 385 (513)
++.++++...+|.
T Consensus 128 ~L~a~~e~~~~R~ 140 (200)
T 3uie_A 128 FMDVPLSVCEARD 140 (200)
T ss_dssp EECCCHHHHHHHC
T ss_pred EEeCCHHHHHHhc
Confidence 8899999999996
No 52
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.53 E-value=1.7e-07 Score=99.15 Aligned_cols=122 Identities=12% Similarity=0.215 Sum_probs=79.7
Q ss_pred chhhhhhcCCCCcchHHHHHHHHHHHHhhhhhhhccchhhHHHHHhhcCCCchhhhhHHHHHHHHHhH-HHHhhhhh---
Q 044777 99 DDIYTFFSSEPAADSLFIKLVEEFERCILSYFAFHWSHADLMISQVLNSDAEPKKKLKHIVMQATREQ-RFERVTKN--- 174 (513)
Q Consensus 99 ~~i~~~~~~~~~~~~l~~~~~eele~~~~~~~~~~~~~~~~li~~~l~~~~~~~~~~~~~v~~a~r~~-rf~r~~~~--- 174 (513)
..+..+.++.+.+++-..++++|+++ .||.++++.+.. ..+++.+++. .-+++.+.
T Consensus 8 ~~~~~l~~~~~l~e~~~~~~l~el~~--------------~Ll~aDv~~~~~------~~~~~~v~~~~~~~~~~~~~~~ 67 (433)
T 3kl4_A 8 DAVRKFLTGSTPYEKAVDEFIKDLQK--------------SLISSDVNVKLV------FSLTAKIKERLNKEKPPSVLER 67 (433)
T ss_dssp HHHHHHTTTCSCHHHHHHHHHHHHHH--------------HHHHTTCCHHHH------HHHHHHHHHHHHHSCCCTTCCH
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHH--------------HHHHcCCChHHH------HHHHHHHHHHHhcccccccCCh
Confidence 34455656677777788889999999 899998886655 5555555553 22333332
Q ss_pred -hHHHHHHHHHHHHHHHhcCCCCCCcccchhcccc----cCCCCCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeE
Q 044777 175 -LKVARVFTTLVEEMKAMGLAPNDDSQCTEVMAPV----ALGDRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAV 249 (513)
Q Consensus 175 -~~v~r~~~~~ve~~~~~~~~~~~~~~~~~vl~p~----~~~~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aV 249 (513)
..+.+.+.+.+ ..+ |.+. ......|.++++.|+|||||||++..|+.. +...+..+.
T Consensus 68 ~~~v~~~v~~eL---~~~-------------L~~~~~~~~~~~~~~~vI~lvG~~GsGKTTt~~kLA~~--l~~~G~kVl 129 (433)
T 3kl4_A 68 KEWFISIVYDEL---SKL-------------FGGDKEPNVNPTKLPFIIMLVGVQGSGKTTTAGKLAYF--YKKRGYKVG 129 (433)
T ss_dssp HHHHHHHHHHHH---HHH-------------HCSSSCCCCSCCSSSEEEEECCCTTSCHHHHHHHHHHH--HHHTTCCEE
T ss_pred HHHHHHHHHHHH---HHh-------------cCccccccccccCCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEE
Confidence 23333333333 322 2211 112236899999999999999999999864 444567788
Q ss_pred Eeccccccc
Q 044777 250 VIEADAFKE 258 (513)
Q Consensus 250 vInaDefR~ 258 (513)
++++|.+|.
T Consensus 130 lv~~D~~r~ 138 (433)
T 3kl4_A 130 LVAADVYRP 138 (433)
T ss_dssp EEEECCSCH
T ss_pred EEecCccch
Confidence 899999874
No 53
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=98.52 E-value=3.2e-06 Score=77.29 Aligned_cols=25 Identities=28% Similarity=0.239 Sum_probs=23.1
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcC
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
+|.+|++.|+|||||||+++.|.+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999885
No 54
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=98.51 E-value=6.7e-07 Score=84.33 Aligned_cols=36 Identities=19% Similarity=0.197 Sum_probs=30.5
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
+|.+|++.|+|||||||+++.|++. .+..+|+.|.+
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~-------l~~~~i~~d~~ 41 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTH-------FELKHLSSGDL 41 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHH-------SSSEEEEHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHH-------cCCeEEechHH
Confidence 5678999999999999999999986 46788998765
No 55
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=98.50 E-value=1.7e-06 Score=77.82 Aligned_cols=39 Identities=28% Similarity=0.307 Sum_probs=29.7
Q ss_pred EEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 216 VLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 216 ~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
.+|+|.|+|||||||+++.|.+. +...+..+.+++.|++
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~--l~~~g~~~~~~~~~~~ 40 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEI--LDNQGINNKIINYGDF 40 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH--HHTTTCCEEEEEHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH--HHhcCceEEEEECChH
Confidence 47899999999999999999886 2222334778876654
No 56
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=98.48 E-value=6.1e-07 Score=84.21 Aligned_cols=36 Identities=22% Similarity=0.302 Sum_probs=30.8
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
+|.+|++.|+|||||||+++.|++. .+..+++.|++
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~-------l~~~~i~~d~~ 39 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTK-------YQLAHISAGDL 39 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHH-------HCCEECCHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH-------hCCceecHHHH
Confidence 5678999999999999999999986 35678998765
No 57
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.47 E-value=3.3e-07 Score=98.72 Aligned_cols=126 Identities=10% Similarity=0.139 Sum_probs=82.1
Q ss_pred cCccchhhhhhcCCCCcchHHHHHHHHHHHHhhhhhhhccchhhHHHHHhhcCCCchhhhhHHHHHHHHHhHHHH-hhh-
Q 044777 95 EGCEDDIYTFFSSEPAADSLFIKLVEEFERCILSYFAFHWSHADLMISQVLNSDAEPKKKLKHIVMQATREQRFE-RVT- 172 (513)
Q Consensus 95 ~~~~~~i~~~~~~~~~~~~l~~~~~eele~~~~~~~~~~~~~~~~li~~~l~~~~~~~~~~~~~v~~a~r~~rf~-r~~- 172 (513)
+.+...+..++++...+++...+.++|+++ .||.++++.+.. ..+.+.+++.-.. .+.
T Consensus 8 ~~l~~~~~~l~~~~~~~e~~~~~~l~el~~--------------~Ll~adv~~~~~------~~~~~~v~~~~~~~~~~~ 67 (504)
T 2j37_W 8 RKITSALRSLSNATIINEEVLNAMLKEVCT--------------ALLEADVNIKLV------KQLRENVKSAIDLEEMAS 67 (504)
T ss_dssp CTTTTTTTCCCSCSSCCHHHHHHHHHHHHH--------------HHCCTTTSSSTT------HHHHHHHHHHHTTCCCCS
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHH--------------HHHHcCCCHHHH------HHHHHHHHHHhhcCcccc
Confidence 444455666777777788888888999999 999999998877 5556666653222 221
Q ss_pred ---hhhHHHHHHHHHHHHHHHhcCCCCCCcccchhcccc----cCCCCCcEEEEEecCCCCchHHHHHHHhcCcccccCC
Q 044777 173 ---KNLKVARVFTTLVEEMKAMGLAPNDDSQCTEVMAPV----ALGDRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAA 245 (513)
Q Consensus 173 ---~~~~v~r~~~~~ve~~~~~~~~~~~~~~~~~vl~p~----~~~~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~ 245 (513)
....+...+.+.+. +++.+. ......|..|+++|++|+||||++..|+.. +...+
T Consensus 68 ~~~~~~~~~~~v~~eL~----------------~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~~--l~~~G 129 (504)
T 2j37_W 68 GLNKRKMIQHAVFKELV----------------KLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYY--YQRKG 129 (504)
T ss_dssp SSCHHHHHHHHHHHHHH----------------HHHCCCCCCCCCCSS--EEEEEECSTTSSHHHHHHHHHHH--HHHTT
T ss_pred cCChHHHHHHHHHHHHH----------------HHhccccchhccccCCCeEEEEECCCCCCHHHHHHHHHHH--HHhCC
Confidence 22234444444442 222221 112356889999999999999999999854 22334
Q ss_pred CCeEEeccccccc
Q 044777 246 GNAVVIEADAFKE 258 (513)
Q Consensus 246 ~~aVvInaDefR~ 258 (513)
..+.+|++|.+|.
T Consensus 130 ~kVllVd~D~~r~ 142 (504)
T 2j37_W 130 WKTCLICADTFRA 142 (504)
T ss_dssp CCEEEEEECCSSS
T ss_pred CeEEEEeccccch
Confidence 5778899999874
No 58
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=98.46 E-value=1.6e-06 Score=77.19 Aligned_cols=36 Identities=25% Similarity=0.433 Sum_probs=30.7
Q ss_pred EEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccccc
Q 044777 216 VLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKE 258 (513)
Q Consensus 216 ~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~ 258 (513)
.+|++.|+|||||||+++.|.+. .++.+++.|.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~-------lg~~~id~d~~~~ 38 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA-------LGYEFVDTDIFMQ 38 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH-------HTCEEEEHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH-------hCCcEEcccHHHH
Confidence 46889999999999999999886 3567999998853
No 59
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.44 E-value=3.3e-07 Score=91.98 Aligned_cols=127 Identities=15% Similarity=0.263 Sum_probs=80.8
Q ss_pred hhhhhhcCCCCcchHHHHHHHHHHHHhhhhhhhccchhhHHHHHhhcCCCchhhhhHHHHHHHHHhHHH-HhhhhhhHH-
Q 044777 100 DIYTFFSSEPAADSLFIKLVEEFERCILSYFAFHWSHADLMISQVLNSDAEPKKKLKHIVMQATREQRF-ERVTKNLKV- 177 (513)
Q Consensus 100 ~i~~~~~~~~~~~~l~~~~~eele~~~~~~~~~~~~~~~~li~~~l~~~~~~~~~~~~~v~~a~r~~rf-~r~~~~~~v- 177 (513)
.+..++++.+.+++-..+.++||++ .||.++++.+.. ..+++.+++.-. +++.+.+..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~--------------~L~~~dv~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 69 (297)
T 1j8m_F 10 TVRKFLTGSSSYDKAVEDFIKELQK--------------SLISADVNVKLV------FSLTNKIKERLKNEKPPTYIERR 69 (297)
T ss_dssp HHHHHHSCCSCHHHHHHHHHHHHHH--------------HHHHTTCCHHHH------HHHHHHHHHHHHHCCCCTTCCHH
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHH--------------HHHHcCCCHHHH------HHHHHHHHHHHhhccccccCChH
Confidence 3455566677666666688999999 999999997776 777777776422 222222222
Q ss_pred HHHHHHHHHHHHHhcCCCCCCcccchhccc-ccCCCCCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 178 ARVFTTLVEEMKAMGLAPNDDSQCTEVMAP-VALGDRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 178 ~r~~~~~ve~~~~~~~~~~~~~~~~~vl~p-~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
..+.+.+++++..+= .+.. .+ ..... +|.++++.|+||+||||++..|+.. +...+..+.+++.|..
T Consensus 70 ~~~~~~~~~~l~~~~-~~~~--------~~~i~~~~-~~~vi~i~G~~G~GKTT~~~~la~~--~~~~g~~v~l~~~D~~ 137 (297)
T 1j8m_F 70 EWFIKIVYDELSNLF-GGDK--------EPKVIPDK-IPYVIMLVGVQGTGKTTTAGKLAYF--YKKKGFKVGLVGADVY 137 (297)
T ss_dssp HHHHHHHHHHHHHHT-TCSC--------CCCCSCSS-SSEEEEEECSSCSSTTHHHHHHHHH--HHHTTCCEEEEECCCS
T ss_pred HHHHHHHHHHHHHHh-cccc--------ccccccCC-CCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEecCCC
Confidence 223444454444331 1100 11 11122 3889999999999999999999864 3344567888999988
Q ss_pred cc
Q 044777 257 KE 258 (513)
Q Consensus 257 R~ 258 (513)
|.
T Consensus 138 r~ 139 (297)
T 1j8m_F 138 RP 139 (297)
T ss_dssp SS
T ss_pred CH
Confidence 64
No 60
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=98.39 E-value=1.2e-06 Score=81.94 Aligned_cols=33 Identities=21% Similarity=0.189 Sum_probs=27.3
Q ss_pred EEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 217 LLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
.|++.|+|||||||+++.|++. .+..+|+.|++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~-------~g~~~i~~d~~ 34 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK-------YGIPQISTGDM 34 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH-------HCCCEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH-------hCCeEEeHHHH
Confidence 3789999999999999999886 25668888655
No 61
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=98.39 E-value=4.5e-06 Score=80.33 Aligned_cols=47 Identities=26% Similarity=0.353 Sum_probs=33.9
Q ss_pred CCCcEEEEEecCCCCchHHHHHHHhcCcccc---cCCCCeEEeccccccc
Q 044777 212 DRSPVLLFMGGGMGAGKSTVLKDILKEPFWA---GAAGNAVVIEADAFKE 258 (513)
Q Consensus 212 ~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~---~~~~~aVvInaDefR~ 258 (513)
..+|.+|.|.|++||||||+++.|....-+. ..+.++++|+.|.|-.
T Consensus 19 ~~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~ 68 (252)
T 1uj2_A 19 GGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYR 68 (252)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBC
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcccc
Confidence 4578899999999999999999998851111 0123566899999853
No 62
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=98.38 E-value=1.3e-06 Score=79.11 Aligned_cols=36 Identities=25% Similarity=0.253 Sum_probs=30.6
Q ss_pred EEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccccc
Q 044777 216 VLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKE 258 (513)
Q Consensus 216 ~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~ 258 (513)
.+|+|.|+|||||||+++.|++. .++.+|+.|.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~-------lg~~~id~D~~~~ 38 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA-------LGVGLLDTDVAIE 38 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH-------HTCCEEEHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH-------cCCCEEeCchHHH
Confidence 35889999999999999999886 3567999999854
No 63
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=98.38 E-value=7.2e-06 Score=78.74 Aligned_cols=26 Identities=23% Similarity=0.516 Sum_probs=23.8
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcC
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
.++.+|++.|+|||||||+++.|.+.
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999886
No 64
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=98.37 E-value=2.9e-06 Score=80.86 Aligned_cols=140 Identities=21% Similarity=0.200 Sum_probs=85.9
Q ss_pred EEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecc-cccccchhhhhhhhccccCchhhHHHHHhHhHH-----HHHH
Q 044777 217 LLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEA-DAFKESDVIYRALSSRSHVDMLQTAELVHQSST-----DAAS 290 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvIna-DefR~~~p~y~~l~~~G~~Dp~qaae~v~~eAt-----rlA~ 290 (513)
.|+|-|||||||||.++.|++. .++++|++ |.+|+....-..+ |. +...+. ..+ .+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~-------~g~~~istGdllR~~i~~~t~l---g~----~~~~~~--~~G~lvpd~iv~ 65 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE-------KGFVHISTGDILREAVQKGTPL---GK----KAKEYM--ERGELVPDDLII 65 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH-------HCCEEEEHHHHHHHHHHHTCHH---HH----HHHHHH--HHTCCCCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH-------HCCeEEcHHHHHHHHHHhcChh---hh----hHHHHH--hcCCcCCHHHHH
Confidence 4778899999999999999987 47889975 5666432110000 00 000110 111 3556
Q ss_pred HHHHHHHHCCCcEEEECcCCChHHHHHHHHHHhhhhhcccccccccccccCCccccchhhhhhhhhhhhcccCCCCeEEE
Q 044777 291 SLLVTALNEGRDVIMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENYWDRIGEREQAQDGKMRKPYRIE 370 (513)
Q Consensus 291 ~li~~aL~~GrsVIlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Yw~~v~~a~~~~~~~~~~gYrI~ 370 (513)
.++...+.+...||+|+--++....+.+..+... .|..+.
T Consensus 66 ~lv~~~l~~~~~~ilDGfPRt~~Qa~~l~~~l~~----------------------------------------~~~~~~ 105 (206)
T 3sr0_A 66 ALIEEVFPKHGNVIFDGFPRTVKQAEALDEMLEK----------------------------------------KGLKVD 105 (206)
T ss_dssp HHHHHHCCSSSCEEEESCCCSHHHHHHHHHHHHH----------------------------------------TTCCCC
T ss_pred HHHHHhhccCCceEecCCchhHHHHHHHHhhHHH----------------------------------------hccccc
Confidence 6777888887889999987776554444332211 122222
Q ss_pred -EEEEecChHHHHHHHHHHHHh--cC------------------C-cCchhHHHHHHHHHHHHH
Q 044777 371 -LVGVVCDAYLAVVRGIRRAIM--CR------------------R-AVRVKSQLKSHKRFANAF 412 (513)
Q Consensus 371 -Lv~V~~dpelAv~Rv~~Rv~~--gG------------------h-~VP~~~il~r~~rf~~nf 412 (513)
++.+.+|.+..++|...|... +| | +..++.+.+|+.-+.++-
T Consensus 106 ~vi~l~v~~e~l~~Rl~~R~~~~~~g~~y~~~~~pp~~g~~l~~r~DD~~e~i~~Rl~~Y~~~t 169 (206)
T 3sr0_A 106 HVLLFEVPDEVVIERLSGRRINPETGEVYHVKYNPPPPGVKVIQREDDKPEVIKKRLEVYREQT 169 (206)
T ss_dssp EEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCCTTCCCBCCGGGSHHHHHHHHHHHHHHT
T ss_pred eeeecCCCHHHHHHHHhCCccccCCCceeeeeccCCCCCceecccCCCCHHHHHHHHHHHHHHH
Confidence 355679999999999988532 22 1 334667777777776653
No 65
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=98.34 E-value=4.9e-07 Score=95.43 Aligned_cols=121 Identities=16% Similarity=0.245 Sum_probs=78.0
Q ss_pred hhcCCCCcchHHHHHHHHHHHHhhhhhhhccchhhHHHHHhhcCCCchhhhhHHHHHHHHHhHHH-Hhhhh----hhHHH
Q 044777 104 FFSSEPAADSLFIKLVEEFERCILSYFAFHWSHADLMISQVLNSDAEPKKKLKHIVMQATREQRF-ERVTK----NLKVA 178 (513)
Q Consensus 104 ~~~~~~~~~~l~~~~~eele~~~~~~~~~~~~~~~~li~~~l~~~~~~~~~~~~~v~~a~r~~rf-~r~~~----~~~v~ 178 (513)
+.++.+.+++-..+.++|+++ .||.++.+.+.. ..+++.+++.-. +.+.+ ...+.
T Consensus 16 ~~~~~~~~e~~~~~~l~e~~~--------------~Ll~adv~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (433)
T 2xxa_A 16 ISGRGRLTEDNVKDTLREVRM--------------ALLEADVALPVV------REFINRVKEKAVGHEVNKSLTPGQEFV 75 (433)
T ss_dssp SCCCSCCCHHHHHHHHHHHHH--------------HHHHHTCCHHHH------HHHHHHHHHHHSSSCCCSSSCTTTTTH
T ss_pred hhCCCCCCHHHHHHHHHHHHH--------------HHHHcCCCHHHH------HHHHHHHHHHHhcccccccCChHHHHH
Confidence 345566666666788999999 999999997766 667777766422 22222 22344
Q ss_pred HHHHHHHHHHHHhcCCCCCCcccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcCcccccC-CCCeEEecccccc
Q 044777 179 RVFTTLVEEMKAMGLAPNDDSQCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGA-AGNAVVIEADAFK 257 (513)
Q Consensus 179 r~~~~~ve~~~~~~~~~~~~~~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~-~~~aVvInaDefR 257 (513)
+.+.+.+-++ ++-. -.|.......|.+|+++|++|+||||++..|+.. +... +..+.+|++|.++
T Consensus 76 ~~~~~~l~~~--l~~~----------~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~--l~~~~G~kVllvd~D~~r 141 (433)
T 2xxa_A 76 KIVRNELVAA--MGEE----------NQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKF--LREKHKKKVLVVSADVYR 141 (433)
T ss_dssp HHHHHHHHHH--HCSS----------SCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHH--HHHTSCCCEEEEECCCSS
T ss_pred HHHHHHHHHH--hccc----------cccccccCCCCeEEEEECCCCCCHHHHHHHHHHH--HHHhcCCeEEEEecCCCC
Confidence 4444333111 1110 0112222356899999999999999999999864 3333 5688899999987
Q ss_pred c
Q 044777 258 E 258 (513)
Q Consensus 258 ~ 258 (513)
.
T Consensus 142 ~ 142 (433)
T 2xxa_A 142 P 142 (433)
T ss_dssp T
T ss_pred c
Confidence 4
No 66
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=98.34 E-value=3.2e-07 Score=83.01 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=32.3
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKE 258 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~ 258 (513)
.++.+|++.|+|||||||+++.|.+. .+..+++.|.+..
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~-------~~~~~~~~d~~~~ 47 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASK-------SGLKYINVGDLAR 47 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHH-------HCCEEEEHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHH-------hCCeEEEHHHHHh
Confidence 35668899999999999999999876 3667899988743
No 67
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.34 E-value=4.9e-07 Score=90.56 Aligned_cols=104 Identities=13% Similarity=0.157 Sum_probs=67.7
Q ss_pred HHHHHHHHHhhhhhhhccchhhHHHHHhhcCCCchhhhhHHHHHHHHHhHHHHhh-hhhhHHHHHHHHHHHHHHHhcCCC
Q 044777 117 KLVEEFERCILSYFAFHWSHADLMISQVLNSDAEPKKKLKHIVMQATREQRFERV-TKNLKVARVFTTLVEEMKAMGLAP 195 (513)
Q Consensus 117 ~~~eele~~~~~~~~~~~~~~~~li~~~l~~~~~~~~~~~~~v~~a~r~~rf~r~-~~~~~v~r~~~~~ve~~~~~~~~~ 195 (513)
..++||++ .||.++++.+.. ..+++.+++.++.+. .....+...+.+.+ ..
T Consensus 40 ~~~~~l~~--------------~L~~~dv~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~----- 91 (296)
T 2px0_A 40 EPLRKAEK--------------LLQETGIKESTK------TNTLKKLLRFSVEAGGLTEENVVGKLQEIL---CD----- 91 (296)
T ss_dssp CHHHHHHH--------------HHHHSCCCHHHH------HHHHHHHHHHHHSSSCCCTTTHHHHHHHHH---HT-----
T ss_pred HHHHHHHH--------------HHHHCCCCHHHH------HHHHHHHHHHhhcccCCCHHHHHHHHHHHH---HH-----
Confidence 34589999 888898887766 777777755544332 12234455555444 22
Q ss_pred CCCcccchhcccccC--CCCCcEEEEEecCCCCchHHHHHHHhcCcccc-cCCCCeEEeccccccc
Q 044777 196 NDDSQCTEVMAPVAL--GDRSPVLLFMGGGMGAGKSTVLKDILKEPFWA-GAAGNAVVIEADAFKE 258 (513)
Q Consensus 196 ~~~~~~~~vl~p~~~--~~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~-~~~~~aVvInaDefR~ 258 (513)
++.+... ...+|.++++.|+|||||||++..|+.. +. ..+..+.+++.|.++.
T Consensus 92 --------~l~~~~~~~~~~~g~vi~lvG~~GsGKTTl~~~LA~~--l~~~~G~~V~lv~~D~~r~ 147 (296)
T 2px0_A 92 --------MLPSADKWQEPIHSKYIVLFGSTGAGKTTTLAKLAAI--SMLEKHKKIAFITTDTYRI 147 (296)
T ss_dssp --------TSCCGGGSCCCCCSSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCCEEEEECCCSST
T ss_pred --------HhCCcccccccCCCcEEEEECCCCCCHHHHHHHHHHH--HHHhcCCEEEEEecCcccc
Confidence 2222111 1236789999999999999999999864 32 1345778899999863
No 68
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=98.33 E-value=8.7e-07 Score=81.55 Aligned_cols=26 Identities=23% Similarity=0.229 Sum_probs=23.5
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcC
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
.+|.+|+|.|++||||||+++.|.+.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999875
No 69
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=98.33 E-value=5.5e-06 Score=78.66 Aligned_cols=37 Identities=22% Similarity=0.175 Sum_probs=31.0
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
..|..|++.|+|||||||+++.|++. .++.+|+.|++
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~-------l~~~~i~~d~l 50 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKN-------FCVCHLATGDM 50 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHH-------HTCEEEEHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH-------hCCceecHHHH
Confidence 34568999999999999999999986 35778998765
No 70
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.33 E-value=2.1e-07 Score=98.21 Aligned_cols=126 Identities=13% Similarity=0.237 Sum_probs=78.2
Q ss_pred chhhhhhcCCCCcchHHHHHHHHHHHHhhhhhhhccchhhHHHHHhhcCCCchhhhhHHHHHHHHHhHHHHh-hhhhhH-
Q 044777 99 DDIYTFFSSEPAADSLFIKLVEEFERCILSYFAFHWSHADLMISQVLNSDAEPKKKLKHIVMQATREQRFER-VTKNLK- 176 (513)
Q Consensus 99 ~~i~~~~~~~~~~~~l~~~~~eele~~~~~~~~~~~~~~~~li~~~l~~~~~~~~~~~~~v~~a~r~~rf~r-~~~~~~- 176 (513)
..+..++++.+.+++-..+.++|++. .||.++++.... ..+...+++..|.. +.++..
T Consensus 10 ~~~~~~~~~~~~~e~~~~~~~~e~~~--------------~Ll~adv~~~~~------~~~~~~vk~~~~~~~~~~~~~~ 69 (432)
T 2v3c_C 10 KALNKLKAAAFVDKKLIKEVIKDIQR--------------ALIQADVNVKLV------LKMSKEIERRALEEKTPKGLSK 69 (432)
T ss_dssp HHHHHCCSSSCCCSSTTHHHHHHHHH--------------HHHHTCCCHHHH------HHHTHHHHHHHSSSCSSCSSCH
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHH--------------HHHHcCCCHHHH------HHHHHHHHHHhccccccccCCh
Confidence 34556666666666666678899999 888888876555 56666677665543 222222
Q ss_pred ---HHHHHHHHHHHHHHhcCCCCCCcccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecc
Q 044777 177 ---VARVFTTLVEEMKAMGLAPNDDSQCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEA 253 (513)
Q Consensus 177 ---v~r~~~~~ve~~~~~~~~~~~~~~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvIna 253 (513)
+...+.+.+.++..-. . .|.......|.+|+|.|+||+||||++..|+.. +...+..+.++++
T Consensus 70 ~~~~~~~~~~~l~~ll~~~---------~---~~~~~~~~~~~vI~ivG~~GvGKTTla~~La~~--l~~~G~kVllv~~ 135 (432)
T 2v3c_C 70 KEHIIKIVYEELVKLLGEE---------A---KKLELNPKKQNVILLVGIQGSGKTTTAAKLARY--IQKRGLKPALIAA 135 (432)
T ss_dssp HHHHHHHHHHHHHHHHCCS---------C---CCCCCCSSSCCCEEEECCSSSSTTHHHHHHHHH--HHHHHCCEEEECC
T ss_pred HHHHHHHHHHHHHHHhCCC---------C---cCccccCCCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEec
Confidence 3333333332221100 0 011112245788999999999999999999874 2233457889999
Q ss_pred ccccc
Q 044777 254 DAFKE 258 (513)
Q Consensus 254 DefR~ 258 (513)
|.+|.
T Consensus 136 D~~r~ 140 (432)
T 2v3c_C 136 DTYRP 140 (432)
T ss_dssp SCCCT
T ss_pred cccCc
Confidence 98863
No 71
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=98.33 E-value=8e-06 Score=79.69 Aligned_cols=60 Identities=12% Similarity=0.014 Sum_probs=41.2
Q ss_pred EEEecChHHHHHHHHHHHHhcCCcCchhHHHHHHHHHHH-HHHHh---hcccceEEEEecCCCC
Q 044777 372 VGVVCDAYLAVVRGIRRAIMCRRAVRVKSQLKSHKRFAN-AFLTY---CQLVDSARLYSTNALE 431 (513)
Q Consensus 372 v~V~~dpelAv~Rv~~Rv~~gGh~VP~~~il~r~~rf~~-nf~~~---~~lvD~a~lyDNs~~~ 431 (513)
+|+++|++.-.+|...+....|+.+..+.+++.-+..-. ....| +...|.+++.||+.++
T Consensus 150 ifl~A~~e~Ra~Rr~~~l~~~~~~~~~~~~~~~i~~rD~~d~~r~~~pl~~~~dal~IDTs~l~ 213 (233)
T 3r20_A 150 IFLTASAEERARRRNAQNVANGLPDDYATVLADVQRRDHLDSTRPVSPLRAADDALVVDTSDMD 213 (233)
T ss_dssp EEEECCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHSCSSCCSCCTTSEEEECTTSC
T ss_pred EEEECCHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccccccccccCcEEEECCCCC
Confidence 788999998888888777778899988877655443332 12222 2335666888888763
No 72
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=98.31 E-value=2.3e-06 Score=94.47 Aligned_cols=124 Identities=10% Similarity=0.013 Sum_probs=75.3
Q ss_pred CCCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccccchhhhhhhhccccCchhhHHHHHhHhHHHHHHH
Q 044777 212 DRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKESDVIYRALSSRSHVDMLQTAELVHQSSTDAASS 291 (513)
Q Consensus 212 ~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~~~p~y~~l~~~G~~Dp~qaae~v~~eAtrlA~~ 291 (513)
..+|.+|+|.|+|||||||+++.|.+. ....+..++.++.|.+|..+. ....+++.. ..+.-+....
T Consensus 49 ~~~g~lIvLtGlsGSGKSTlAr~La~~--L~~~G~~~v~lDgD~iR~~L~------~~~~fs~~d-----ree~~r~i~e 115 (630)
T 1x6v_B 49 GFRGCTVWLTGLSGAGKTTVSMALEEY--LVCHGIPCYTLDGDNIRQGLN------KNLGFSPED-----REENVRRIAE 115 (630)
T ss_dssp SCCCEEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEESHHHHTTTTT------TTCCSSHHH-----HHHHHHHHHH
T ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEechHHhhhccC------ccccCChhh-----hHHHHHHHHH
Confidence 347899999999999999999999876 212234677889999875321 100121100 0111122233
Q ss_pred HHHHHHHCCCcEEEECcCCChHHHHHHHHHHhhhhhcccccccccccccCCccccchhhhhhhhhhhhcccCCCCeEEEE
Q 044777 292 LLVTALNEGRDVIMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENYWDRIGEREQAQDGKMRKPYRIEL 371 (513)
Q Consensus 292 li~~aL~~GrsVIlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Yw~~v~~a~~~~~~~~~~gYrI~L 371 (513)
++..+++.|..||.+.+......+..+.+++ +..|..+..
T Consensus 116 va~~~l~~G~iVI~d~~s~~~~~r~~~r~ll----------------------------------------~~~g~p~~v 155 (630)
T 1x6v_B 116 VAKLFADAGLVCITSFISPYTQDRNNARQIH----------------------------------------EGASLPFFE 155 (630)
T ss_dssp HHHHHHHTTCEEEEECCCCCHHHHHHHHHHH----------------------------------------HTTTCCEEE
T ss_pred HHHHHHhCCCEEEEeCchhhHHHHHHHHHHH----------------------------------------HhCCCCeEE
Confidence 4556678998888875433322333332222 123444567
Q ss_pred EEEecChHHHHHHHHHH
Q 044777 372 VGVVCDAYLAVVRGIRR 388 (513)
Q Consensus 372 v~V~~dpelAv~Rv~~R 388 (513)
+++.+|++++.+|..++
T Consensus 156 V~Ldap~Evl~~Rl~r~ 172 (630)
T 1x6v_B 156 VFVDAPLHVCEQRDVKG 172 (630)
T ss_dssp EEEECCHHHHHHHCTTS
T ss_pred EEEECCHHHHHHHhccc
Confidence 88999999999997643
No 73
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.30 E-value=8.7e-06 Score=75.31 Aligned_cols=39 Identities=28% Similarity=0.417 Sum_probs=33.0
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFK 257 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR 257 (513)
.++.++.+.|+|||||||+++.|... + .++.+|+.|.+-
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~--~----~~~~~i~~D~~~ 57 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH--L----PNCSVISQDDFF 57 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT--S----TTEEEEEGGGGB
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh--c----CCcEEEeCCccc
Confidence 35789999999999999999999886 1 268899999874
No 74
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.30 E-value=1.3e-06 Score=92.19 Aligned_cols=125 Identities=18% Similarity=0.268 Sum_probs=78.3
Q ss_pred hhhhhcCCCCcchHHHHHHHHHHHHhhhhhhhccchhhHHHHHhhcCCCchhhhhHHHHHHHHHhHHH-HhhhhhhHHHH
Q 044777 101 IYTFFSSEPAADSLFIKLVEEFERCILSYFAFHWSHADLMISQVLNSDAEPKKKLKHIVMQATREQRF-ERVTKNLKVAR 179 (513)
Q Consensus 101 i~~~~~~~~~~~~l~~~~~eele~~~~~~~~~~~~~~~~li~~~l~~~~~~~~~~~~~v~~a~r~~rf-~r~~~~~~v~r 179 (513)
+..++++.+.+++-..+.++|+++ .||.++.+.+.. ..+++.+++.-. +.+.+.+....
T Consensus 13 ~~~l~~~~~~~e~~~~~~l~e~~~--------------~Ll~adv~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~ 72 (425)
T 2ffh_A 13 IGRLRGRGRITEEDLKATLREIRR--------------ALMDADVNLEVT------RDFVERVREEALGKQVLESLTPAE 72 (425)
T ss_dssp HHTTTTCCSCCHHHHHHHHHHHHH--------------HHHHTTCCHHHH------HHHHHHHHHHHHTTTGGGCSCHHH
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHH--------------HHHHCCCCHHHH------HHHHHHHHHHHccccccccCCcHH
Confidence 334556677777777889999999 899998887666 666777766422 33332222222
Q ss_pred -HHHHHHHHHHHhcCCCCCCcccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccccc
Q 044777 180 -VFTTLVEEMKAMGLAPNDDSQCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKE 258 (513)
Q Consensus 180 -~~~~~ve~~~~~~~~~~~~~~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~ 258 (513)
+...+.+++..+= .+. . .++.. . .|.++++.|++||||||++..|+.. +...+..+.++++|.++.
T Consensus 73 ~~~~~v~~~L~~~~-~~~-----~---~~i~l-~-~~~vi~i~G~~GsGKTT~~~~LA~~--l~~~g~~Vllvd~D~~r~ 139 (425)
T 2ffh_A 73 VILATVYEALKEAL-GGE-----A---RLPVL-K-DRNLWFLVGLQGSGKTTTAAKLALY--YKGKGRRPLLVAADTQRP 139 (425)
T ss_dssp HHHHHHHHHHHHHT-TSS-----C---CCCCC-C-SSEEEEEECCTTSSHHHHHHHHHHH--HHTTTCCEEEEECCSSCH
T ss_pred HHHHHHHHHHHHHh-CCC-----c---ccccC-C-CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEeeccccCc
Confidence 2222222222221 100 0 11212 2 6889999999999999999999864 344466788889999873
No 75
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=98.29 E-value=2.2e-06 Score=76.12 Aligned_cols=35 Identities=26% Similarity=0.209 Sum_probs=29.6
Q ss_pred EEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccccc
Q 044777 217 LLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKE 258 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~ 258 (513)
.|++.|+|||||||+++.|.+. .++.+++.|.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~-------l~~~~i~~d~~~~ 36 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS-------LNIPFYDVDEEVQ 36 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH-------HTCCEEEHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH-------hCCCEEECcHHHH
Confidence 5789999999999999999886 2466899998853
No 76
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=98.29 E-value=2.7e-06 Score=78.27 Aligned_cols=26 Identities=31% Similarity=0.431 Sum_probs=23.5
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcC
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
.+|.+|++.|++||||||+++.|.+.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999875
No 77
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=98.29 E-value=3.1e-06 Score=76.12 Aligned_cols=40 Identities=13% Similarity=0.138 Sum_probs=29.8
Q ss_pred cEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
+.+|+|.|+|||||||+++.|.+. +...+.++.+++.|++
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~--l~~~g~~~~~i~~~~~ 42 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDN--LRKEGVNYKMVSFGSV 42 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH--HHTTTCCCEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHhcCcceEEEehHHH
Confidence 568999999999999999999885 1111122678887654
No 78
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=98.24 E-value=1.9e-05 Score=75.48 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=22.8
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcC
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
+++.+|++.|++||||||.++.|.+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999775
No 79
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=98.23 E-value=2.4e-05 Score=76.29 Aligned_cols=27 Identities=26% Similarity=0.437 Sum_probs=23.0
Q ss_pred CCCcEEEEEecCCCCchHHHHHHHhcC
Q 044777 212 DRSPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 212 ~~~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
..++.+|++.|++||||||+++.|.+.
T Consensus 24 ~~~~~~i~~eG~~GsGKsT~~~~l~~~ 50 (236)
T 3lv8_A 24 AMNAKFIVIEGLEGAGKSTAIQVVVET 50 (236)
T ss_dssp --CCCEEEEEESTTSCHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 346889999999999999999999775
No 80
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.23 E-value=1.3e-05 Score=72.60 Aligned_cols=40 Identities=23% Similarity=0.320 Sum_probs=33.6
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKE 258 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~ 258 (513)
++.++++.|+|||||||+++.|+.. ...+.++++.|.+..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~-----~~~g~i~i~~d~~~~ 47 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL-----PGVPKVHFHSDDLWG 47 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC-----SSSCEEEECTTHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc-----cCCCeEEEcccchhh
Confidence 5789999999999999999999886 134678999998853
No 81
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=98.23 E-value=1.6e-05 Score=86.62 Aligned_cols=104 Identities=12% Similarity=0.121 Sum_probs=62.5
Q ss_pred cchhcccccC-CCCCcEEEEEecCCCCchHHHHHHHhcCcccccCC-CCeEEecccccccchhhhhhhhccccCchhhHH
Q 044777 201 CTEVMAPVAL-GDRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAA-GNAVVIEADAFKESDVIYRALSSRSHVDMLQTA 278 (513)
Q Consensus 201 ~~~vl~p~~~-~~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~-~~aVvInaDefR~~~p~y~~l~~~G~~Dp~qaa 278 (513)
+..+++...+ ...+|.+|++.|++||||||+++.|.+...+ .+ ..+++++.|.++.. +.....+...
T Consensus 381 Vsr~lRe~~~~~gq~~~~I~l~GlsGSGKSTiA~~La~~L~~--~G~~~~~~lD~D~ir~~------l~~~~~f~~~--- 449 (573)
T 1m8p_A 381 VVKILRESNPPRATQGFTIFLTGYMNSGKDAIARALQVTLNQ--QGGRSVSLLLGDTVRHE------LSSELGFTRE--- 449 (573)
T ss_dssp HHHHHHTTSCCTTTCCEEEEEECSTTSSHHHHHHHHHHHHHH--HCSSCEEEEEHHHHHHH------TCTTCCCSHH---
T ss_pred ccHHHHHhcccccccceEEEeecCCCCCHHHHHHHHHHHhcc--cCCceEEEECcHHHHHH------hccccCCChh---
Confidence 4445444433 3567899999999999999999999886221 12 35788999998652 2211112111
Q ss_pred HHHhHhHHHHHHHHHHHHHHCCCcEEEECcCCChHHHHH
Q 044777 279 ELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVVQ 317 (513)
Q Consensus 279 e~v~~eAtrlA~~li~~aL~~GrsVIlDtTlS~~~~~~q 317 (513)
+. .+..+....++...+++|..||.+.+...+..+..
T Consensus 450 er--~~~i~ri~~v~~~~~~~g~~VI~~~is~~~~~R~~ 486 (573)
T 1m8p_A 450 DR--HTNIQRIAFVATELTRAGAAVIAAPIAPYEESRKF 486 (573)
T ss_dssp HH--HHHHHHHHHHHHHHHHTTCEEEEECCCCCHHHHHH
T ss_pred HH--HHHHHHHHHHHHHHHhCCCEEEEEcCCCcHHHHHH
Confidence 10 01112223456667789999999855544544443
No 82
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.22 E-value=6.5e-06 Score=74.49 Aligned_cols=44 Identities=18% Similarity=0.236 Sum_probs=32.9
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKE 258 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~ 258 (513)
.++.+|++.|+|||||||+++.|... ....+...+.++.|.++.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~--l~~~g~~~i~~d~~~~~~ 46 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEY--LVCHGIPCYTLDGDNIRQ 46 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHH--HHHTTCCEEEEEHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH--HhhCCCcEEEECChHHHH
Confidence 35778999999999999999999874 111123567778888865
No 83
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.22 E-value=3.1e-06 Score=78.71 Aligned_cols=43 Identities=16% Similarity=0.188 Sum_probs=33.3
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFK 257 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR 257 (513)
.+|.++.+.|++||||||+++.|... ....+..+.+++.|.+.
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~--~~~~~~~v~~~~~d~~~ 62 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQT--LREQGISVCVFHMDDHI 62 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHH--HHHTTCCEEEEEGGGGC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HhhcCCeEEEeccCccc
Confidence 46789999999999999999999864 22223556677888875
No 84
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=98.20 E-value=4e-05 Score=73.35 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=22.3
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcC
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
++.+|++.|++||||||.++.|.+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~ 26 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVET 26 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999999775
No 85
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=98.20 E-value=1.3e-05 Score=74.67 Aligned_cols=36 Identities=33% Similarity=0.486 Sum_probs=31.1
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFK 257 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR 257 (513)
+|.+|.|.|++||||||+++.|... +..+|++|.+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~l--------g~~~id~D~~~ 38 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFADL--------GINVIDADIIA 38 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHT--------TCEEEEHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHc--------CCEEEEccHHH
Confidence 5789999999999999999999763 56789999874
No 86
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.19 E-value=1.9e-07 Score=85.81 Aligned_cols=24 Identities=38% Similarity=0.621 Sum_probs=20.9
Q ss_pred cEEEEEecCCCCchHHHHHHHhcC
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
|.++.+.|||||||||+++.|...
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 457889999999999999999853
No 87
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=98.19 E-value=4.2e-06 Score=90.68 Aligned_cols=121 Identities=12% Similarity=0.094 Sum_probs=70.2
Q ss_pred HHHHHH-HHhcCCCC---CCcccchhcccccCC-CCCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccc
Q 044777 183 TLVEEM-KAMGLAPN---DDSQCTEVMAPVALG-DRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFK 257 (513)
Q Consensus 183 ~~ve~~-~~~~~~~~---~~~~~~~vl~p~~~~-~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR 257 (513)
|.|.++ ..-|..+. ..+++.++++...++ ...|.+|++.|++||||||+++.|.+.. ...+..+.+++.|.++
T Consensus 335 t~iR~~~L~~g~~~p~~~~r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L--~~~G~~~~~ld~D~ir 412 (546)
T 2gks_A 335 TEIRENFLKQGRKLPEWFTRPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATML--QARGRKVTLLDGDVVR 412 (546)
T ss_dssp --CTHHHHTTTCCCCTTTSCHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEECHHHHH
T ss_pred hhhhhhhhcCCCCCCccccchhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHh--hhcCCeEEEECchHhh
Confidence 555555 44444332 123445555554433 4568899999999999999999998752 2234467899999997
Q ss_pred cchhhhhhhhccccCchhhHHHHHhHhHHHHHHHHHHHHHHCCCcEEEECcCCChHHHH
Q 044777 258 ESDVIYRALSSRSHVDMLQTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVV 316 (513)
Q Consensus 258 ~~~p~y~~l~~~G~~Dp~qaae~v~~eAtrlA~~li~~aL~~GrsVIlDtTlS~~~~~~ 316 (513)
..+ .....+.. .+.. ...+.....+...++.|..||+|.++..+..+.
T Consensus 413 ~~l------~~~~~f~~---~er~--~~l~~i~~~~~~~l~~G~~VI~d~~~~~~~~r~ 460 (546)
T 2gks_A 413 THL------SRGLGFSK---EDRI--TNILRVGFVASEIVKHNGVVICALVSPYRSARN 460 (546)
T ss_dssp HHT------CTTCCSSH---HHHH--HHHHHHHHHHHHHHHTTCEEEEECCCCCHHHHH
T ss_pred hhh------cccccccH---HHHH--HHHHHHHHHHHHHHhCCCEEEEEcCCCCHHHHH
Confidence 543 11111211 1110 001112234556778999999998887655433
No 88
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=98.18 E-value=3.5e-06 Score=77.51 Aligned_cols=33 Identities=33% Similarity=0.438 Sum_probs=28.6
Q ss_pred EEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccc
Q 044777 217 LLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFK 257 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR 257 (513)
.|.+.|+|||||||+++.|+.. ++.+++.|.+.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~~--------g~~~i~~d~~~ 35 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFREL--------GAYVLDADKLI 35 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHHT--------TCEEEEHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHHC--------CCEEEEccHHH
Confidence 6889999999999999999873 57789999874
No 89
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.17 E-value=1.5e-05 Score=71.11 Aligned_cols=37 Identities=30% Similarity=0.382 Sum_probs=31.4
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFK 257 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR 257 (513)
++.+|++.|+|||||||+++.|+.. .+.+++++|.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~-------l~~~~id~d~~~ 39 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQ-------LNMEFYDSDQEI 39 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH-------TTCEEEEHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH-------hCCCEEeccHHH
Confidence 3567899999999999999999886 356899999874
No 90
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=98.11 E-value=6.9e-05 Score=67.91 Aligned_cols=22 Identities=41% Similarity=0.545 Sum_probs=20.5
Q ss_pred EEEEecCCCCchHHHHHHHhcC
Q 044777 217 LLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~ 238 (513)
+|++.|++||||||+++.|++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 5889999999999999999886
No 91
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.10 E-value=3.5e-06 Score=77.03 Aligned_cols=25 Identities=36% Similarity=0.632 Sum_probs=22.7
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcC
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
++.++.+.|+|||||||+++.|...
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4678999999999999999999876
No 92
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=98.10 E-value=2.9e-05 Score=74.80 Aligned_cols=35 Identities=26% Similarity=0.424 Sum_probs=29.8
Q ss_pred cEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccc
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFK 257 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR 257 (513)
-..|-+.|.+||||||+++.|.+. ++.+||+|.+.
T Consensus 9 ~~~iglTGgigsGKStv~~~l~~~--------g~~vidaD~ia 43 (210)
T 4i1u_A 9 MYAIGLTGGIGSGKTTVADLFAAR--------GASLVDTDLIA 43 (210)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHT--------TCEEEEHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHHC--------CCcEEECcHHH
Confidence 356788999999999999988763 67899999975
No 93
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=98.10 E-value=6.5e-06 Score=75.40 Aligned_cols=41 Identities=17% Similarity=0.250 Sum_probs=33.5
Q ss_pred CCCCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccc
Q 044777 211 GDRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFK 257 (513)
Q Consensus 211 ~~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR 257 (513)
+..++..|++.|+|||||||+++.|++.. .++.+|+.|.+-
T Consensus 6 ~~~~~~~I~l~G~~GsGKSTv~~~La~~l------~g~~~id~d~~~ 46 (184)
T 1y63_A 6 EQPKGINILITGTPGTGKTSMAEMIAAEL------DGFQHLEVGKLV 46 (184)
T ss_dssp CCCSSCEEEEECSTTSSHHHHHHHHHHHS------TTEEEEEHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhc------CCCEEeeHHHHH
Confidence 34456789999999999999999998751 367899999874
No 94
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=98.08 E-value=1.9e-05 Score=76.54 Aligned_cols=26 Identities=27% Similarity=0.257 Sum_probs=20.4
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcC
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
.++.+|++.|++||||||.++.|.+.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~ 48 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDR 48 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 36789999999999999999999875
No 95
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.03 E-value=1.5e-05 Score=79.52 Aligned_cols=123 Identities=16% Similarity=0.239 Sum_probs=77.5
Q ss_pred hhhcCCCCcchHHHHHHHHHHHHhhhhhhhccchhhHHHHHhhcCCCchhhhhHHHHHHHHHhHHHHhhhhh-hHH-HHH
Q 044777 103 TFFSSEPAADSLFIKLVEEFERCILSYFAFHWSHADLMISQVLNSDAEPKKKLKHIVMQATREQRFERVTKN-LKV-ARV 180 (513)
Q Consensus 103 ~~~~~~~~~~~l~~~~~eele~~~~~~~~~~~~~~~~li~~~l~~~~~~~~~~~~~v~~a~r~~rf~r~~~~-~~v-~r~ 180 (513)
.++++.+.+++-..++++||+. .||.++.+.+.. ..+++.++...-++.... ... ..+
T Consensus 15 ~~~~~~~~~~~~l~~~l~~l~~--------------~Ll~ad~~~~~~------~~l~d~v~~~~~g~~~~~~~~~~~~~ 74 (295)
T 1ls1_A 15 RLRGRGRITEEDLKATLREIRR--------------ALMDADVNLEVA------RDFVERVREEALGKQVLESLTPAEVI 74 (295)
T ss_dssp TTTTSCSCCHHHHHHHHHHHHH--------------HHHHTTCCHHHH------HHHHHHHHHHHHHTTTTTCSCHHHHH
T ss_pred HHhCCCCCCHHHHHHHHHHHHH--------------HHHHCCCCHHHH------HHHHHHHHHHHccccccccCCcHHHH
Confidence 3566677677677788999998 777777665544 666777766555555431 111 334
Q ss_pred HHHHHHHHHHhcCCCCCCcccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccccc
Q 044777 181 FTTLVEEMKAMGLAPNDDSQCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKE 258 (513)
Q Consensus 181 ~~~~ve~~~~~~~~~~~~~~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~ 258 (513)
+.-.++++...- .+. . .+..- . .|.++.+.|+||+||||++..|+.. +...+..+.+++.|..+.
T Consensus 75 ~~~~~~~l~~~~-~~~-----~---~~i~~-~-~~~~i~i~g~~G~GKTT~~~~la~~--~~~~~~~v~l~~~d~~~~ 139 (295)
T 1ls1_A 75 LATVYEALKEAL-GGE-----A---RLPVL-K-DRNLWFLVGLQGSGKTTTAAKLALY--YKGKGRRPLLVAADTQRP 139 (295)
T ss_dssp HHHHHHHHHHHT-TSS-----C---CCCCC-C-SSEEEEEECCTTTTHHHHHHHHHHH--HHHTTCCEEEEECCSSCH
T ss_pred HHHHHHHHHHHH-CCC-----C---ceeec-C-CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEecCCcccH
Confidence 444444443321 100 0 11111 2 6788888899999999999999864 334456778889998763
No 96
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=98.03 E-value=4.6e-06 Score=78.53 Aligned_cols=38 Identities=26% Similarity=0.359 Sum_probs=32.8
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFK 257 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR 257 (513)
....+|.+.|++||||||+++.|.+. .++.+|++|.+-
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~-------lg~~vid~D~~~ 47 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNK-------YGAHVVNVDRIG 47 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHH-------HCCEEEEHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHh-------cCCEEEECcHHH
Confidence 35678999999999999999999885 367899999984
No 97
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=98.02 E-value=1.9e-05 Score=71.18 Aligned_cols=35 Identities=31% Similarity=0.458 Sum_probs=30.3
Q ss_pred EEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccccc
Q 044777 217 LLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKE 258 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~ 258 (513)
.|+|.|+|||||||+++.|++. .++.+++.|.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~-------l~~~~~d~d~~~~ 40 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD-------LDLVFLDSDFLIE 40 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH-------HTCEEEEHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH-------cCCCEEcccHHHH
Confidence 4788999999999999999986 4678999999853
No 98
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=98.01 E-value=0.00037 Score=66.00 Aligned_cols=24 Identities=25% Similarity=0.587 Sum_probs=21.2
Q ss_pred cEEEEEecCCCCchHHHHHHHhcC
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
..+|.+-|+.||||||.++.|.+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~ 25 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHR 25 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHHH
Confidence 468899999999999999988775
No 99
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.99 E-value=9.9e-06 Score=74.06 Aligned_cols=25 Identities=24% Similarity=0.550 Sum_probs=22.2
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcC
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
.+.++.+.|||||||||+++.|...
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 4568999999999999999999875
No 100
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=97.98 E-value=0.00015 Score=67.31 Aligned_cols=37 Identities=24% Similarity=0.381 Sum_probs=31.5
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFK 257 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR 257 (513)
+|.+|.+.|++||||||+++.|.+. .++.+++.|.+-
T Consensus 2 ~~~~i~i~G~~gsGkst~~~~l~~~-------~g~~~~~~d~~~ 38 (219)
T 2h92_A 2 KAINIALDGPAAAGKSTIAKRVASE-------LSMIYVDTGAMY 38 (219)
T ss_dssp -CCCEEEECCTTSSHHHHHHHHHHH-------TTCEEEEHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh-------cCCceecCChHH
Confidence 4678999999999999999999886 467899999883
No 101
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=97.97 E-value=5.2e-05 Score=78.07 Aligned_cols=144 Identities=17% Similarity=0.064 Sum_probs=77.4
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccccc--chhh------hhhhhcc-cc----Cch-hhHH
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKE--SDVI------YRALSSR-SH----VDM-LQTA 278 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~--~~p~------y~~l~~~-G~----~Dp-~qaa 278 (513)
.+|.+|+|.||+||||||++..|++. .+..+||+|.+-- .+.+ ..+.... .+ .+| .+
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~-------l~~eiIs~Ds~qvYr~mdIgTakp~~eE~~gvphhlidi~~~~~e-- 108 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAH-------FPLEVINSDKMQVYKGLDITTNKISVPDRGGVPHHLLGEVDPARG-- 108 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTT-------SCEEEEECCSSTTBSSCTTTTTCCCSGGGTTCCEESSSCBCGGGC--
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHH-------CCCcEEcccccccccceeeecCCCCHHHHcCCCEeeccccCcccC--
Confidence 35679999999999999999999997 4678999999820 0000 0001100 00 022 11
Q ss_pred HHHhHhHHHHHHHHHHHHHHCCCcEEEECcCCChHHHHHHHHHHhhhhhcccccccccccccCCccccchhhhhhhhhhh
Q 044777 279 ELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENYWDRIGEREQA 358 (513)
Q Consensus 279 e~v~~eAtrlA~~li~~aL~~GrsVIlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Yw~~v~~a~~~ 358 (513)
.+....-.+.+...+......|..+|+-|. +.-|++.++. |+.. .. ........+ . +
T Consensus 109 ~~s~~~F~~~a~~~i~~i~~~g~~pIlvGG--tglYi~all~--------------g~~~-p~-~~d~~~a~~---~--~ 165 (339)
T 3a8t_A 109 ELTPADFRSLAGKAVSEITGRRKLPVLVGG--SNSFIHALLV--------------DRFD-SS-GPGVFEEGS---H--S 165 (339)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCEEEEECC--CHHHHHHHHB--------------SSCC-TT-CC--------------
T ss_pred ccCHHHHHHHHHHHHHHHHhcCCeEEEEcC--HHHHHHHHHh--------------CCCC-Cc-ccChhhhcc---c--C
Confidence 111111124555667777788887777543 2334443321 2100 00 000000000 0 0
Q ss_pred hcccCCCCeEEEEEEEecChHHHHHHHHHHH
Q 044777 359 QDGKMRKPYRIELVGVVCDAYLAVVRGIRRA 389 (513)
Q Consensus 359 ~~~~~~~gYrI~Lv~V~~dpelAv~Rv~~Rv 389 (513)
......+|.+.++++.++.+...+|+..|+
T Consensus 166 -~~~~~~~~~~~~i~L~~~re~L~~RI~~R~ 195 (339)
T 3a8t_A 166 -VVSSELRYDCCFLWVDVSVKVLTDYLAKRV 195 (339)
T ss_dssp -----CBSSEEEEEEEECCHHHHHHHHHHHH
T ss_pred -ccccccccCeEEEEEeCCHHHHHHHHHhhc
Confidence 000124678888888899999999999885
No 102
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.96 E-value=4.2e-06 Score=76.54 Aligned_cols=25 Identities=16% Similarity=0.364 Sum_probs=22.0
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcC
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
+..++++.|||||||||+++.|...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4568999999999999999999864
No 103
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.96 E-value=9.7e-06 Score=75.89 Aligned_cols=25 Identities=32% Similarity=0.616 Sum_probs=23.0
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcC
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
++.++++.|||||||||+++.|+..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 5779999999999999999999876
No 104
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.95 E-value=2.2e-05 Score=73.95 Aligned_cols=77 Identities=22% Similarity=0.345 Sum_probs=46.7
Q ss_pred EEEecCCCCchHHHHHHHhcC---ccc-------------ccCCCCeEEecccccccchh-----hhhhhhccccCchhh
Q 044777 218 LFMGGGMGAGKSTVLKDILKE---PFW-------------AGAAGNAVVIEADAFKESDV-----IYRALSSRSHVDMLQ 276 (513)
Q Consensus 218 ILmaG~pGAGKSTla~~Ll~~---~f~-------------~~~~~~aVvInaDefR~~~p-----~y~~l~~~G~~Dp~q 276 (513)
|+|+||+||||||+.+.|.+. .|. +.+|.+..+|+.++|.++.. .|.... |.+
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~~G~dY~Fvs~~eF~~~i~~g~flE~~~~~--g~~---- 77 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFS--GNY---- 77 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEET--TEE----
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCcCCceeEeecHHHHHHHHHcCCEEEEEEEc--Cce----
Confidence 789999999999999999754 121 22344667777777754211 111111 111
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHCCCcEEEECcC
Q 044777 277 TAELVHQSSTDAASSLLVTALNEGRDVIMDGTL 309 (513)
Q Consensus 277 aae~v~~eAtrlA~~li~~aL~~GrsVIlDtTl 309 (513)
..+ ...-++..+++|.++|+|...
T Consensus 78 -------YGt--~~~~v~~~l~~g~~vil~id~ 101 (186)
T 1ex7_A 78 -------YGS--TVASVKQVSKSGKTCILDIDM 101 (186)
T ss_dssp -------EEE--EHHHHHHHHHHTSEEEEECCH
T ss_pred -------eee--ecceeeehhhCCCEEEecCCH
Confidence 000 012356788999999999754
No 105
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.95 E-value=2.8e-05 Score=69.46 Aligned_cols=37 Identities=24% Similarity=0.276 Sum_probs=30.6
Q ss_pred cEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccccc
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKE 258 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~ 258 (513)
-..|+|.|+|||||||+++.|++. .++.+++.|.+..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~-------lg~~~id~D~~~~ 43 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLA-------LKLEVLDTDMIIS 43 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHH-------HTCCEEEHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHH-------hCCCEEEChHHHH
Confidence 357889999999999999999886 3567899998843
No 106
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.95 E-value=2.6e-05 Score=72.53 Aligned_cols=36 Identities=22% Similarity=0.326 Sum_probs=30.7
Q ss_pred cEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccc
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFK 257 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR 257 (513)
+..|.+.|+|||||||+++.|... .++.++++|.+.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~-------~g~~~~d~g~i~ 40 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEA-------LQWHLLDSGAIY 40 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH-------HTCEEEEHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH-------hCCCcccCccee
Confidence 457899999999999999999875 356789999884
No 107
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.94 E-value=8.3e-05 Score=71.88 Aligned_cols=37 Identities=24% Similarity=0.325 Sum_probs=31.2
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFK 257 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR 257 (513)
.+.+|.|.|+|||||||+++.|++. .+..++++|.+.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~-------Lg~~~~d~g~i~ 62 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAES-------LNWRLLDSGAIY 62 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHH-------TTCEEEEHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHh-------cCCCcCCCCcee
Confidence 3568999999999999999999876 466788888874
No 108
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.93 E-value=5.1e-05 Score=77.54 Aligned_cols=36 Identities=22% Similarity=0.317 Sum_probs=32.4
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
+|.+|+|+||+||||||++..|++. .+..+|+.|.+
T Consensus 4 m~~~i~i~GptGsGKTtla~~La~~-------l~~~iis~Ds~ 39 (323)
T 3crm_A 4 LPPAIFLMGPTAAGKTDLAMALADA-------LPCELISVDSA 39 (323)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH-------SCEEEEEECTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH-------cCCcEEeccch
Confidence 5679999999999999999999987 46789999987
No 109
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.91 E-value=8.8e-05 Score=70.44 Aligned_cols=38 Identities=26% Similarity=0.296 Sum_probs=32.4
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFK 257 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR 257 (513)
.++.+|.+.|+|||||||+++.|+.. .++.++++|.+.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~-------lg~~~~d~d~~~ 51 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKD-------FGFTYLDTGAMY 51 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHH-------HCCEEEEHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH-------cCCceecCCCee
Confidence 45678999999999999999999885 356789999884
No 110
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=97.88 E-value=4.1e-05 Score=74.81 Aligned_cols=34 Identities=26% Similarity=0.277 Sum_probs=27.5
Q ss_pred EEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccc-ccc
Q 044777 218 LFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADA-FKE 258 (513)
Q Consensus 218 ILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDe-fR~ 258 (513)
+-+.|+|||||||.++.|++. .++.+|++|+ +|+
T Consensus 11 ~~~~G~pGsGKsT~a~~L~~~-------~g~~~is~gdllR~ 45 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKEK-------FGIPQISTGDMLRA 45 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHHH-------HTCCEECHHHHHHH
T ss_pred eeeECCCCCCHHHHHHHHHHH-------hCCCeeechHHHHH
Confidence 457899999999999999986 3677999854 554
No 111
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=97.87 E-value=0.00018 Score=69.70 Aligned_cols=27 Identities=19% Similarity=0.233 Sum_probs=24.0
Q ss_pred CCCcEEEEEecCCCCchHHHHHHHhcC
Q 044777 212 DRSPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 212 ~~~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
..++.+|++.|++||||||+++.|.+.
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~~ 44 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAEY 44 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999999875
No 112
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.87 E-value=9.9e-05 Score=75.35 Aligned_cols=37 Identities=22% Similarity=0.310 Sum_probs=32.8
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
.+|.+++|+||+||||||++..|++. .+..+|++|.+
T Consensus 8 ~~~~~i~i~GptgsGKt~la~~La~~-------~~~~iis~Ds~ 44 (316)
T 3foz_A 8 SLPKAIFLMGPTASGKTALAIELRKI-------LPVELISVDSA 44 (316)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH-------SCEEEEECCTT
T ss_pred CCCcEEEEECCCccCHHHHHHHHHHh-------CCCcEEecccc
Confidence 46889999999999999999999987 46789999985
No 113
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.85 E-value=0.00031 Score=65.35 Aligned_cols=51 Identities=6% Similarity=-0.149 Sum_probs=34.7
Q ss_pred EEEEEecChHHHHHHHHHHHHhcCCcCchhHHHHHHHH-HHHH---HHHhhcccceE
Q 044777 370 ELVGVVCDAYLAVVRGIRRAIMCRRAVRVKSQLKSHKR-FANA---FLTYCQLVDSA 422 (513)
Q Consensus 370 ~Lv~V~~dpelAv~Rv~~Rv~~gGh~VP~~~il~r~~r-f~~n---f~~~~~lvD~a 422 (513)
..++|.++.+..+.|..+|....|+ +.+.+..++.. -..+ .......+|-+
T Consensus 150 ~~i~vd~~~~~~~~R~~~R~~~~g~--t~~~~~~~~~~~~~~~~~~i~~~~~~aD~v 204 (208)
T 3c8u_A 150 VSIRLEVPMADLEARLVQRWLDHGL--NHDAAVARAQGNDLANARAIEAARLPADLT 204 (208)
T ss_dssp EEEEECCCHHHHHHHHHHHHHHTTC--CHHHHHHHHHTHHHHHHHHHHTTBCCCSEE
T ss_pred EEEEEeCCHHHHHHHHHHHHHhcCC--CHHHHHHHHHhccHHHHHHHHhCCCCCCEE
Confidence 3577889999999999999877676 45556666653 3333 33445566654
No 114
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.80 E-value=3.8e-06 Score=77.38 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=20.3
Q ss_pred EEEEecCCCCchHHHHHHHhcC
Q 044777 217 LLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~ 238 (513)
+|+|.|++||||||+++.|.+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999999875
No 115
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.77 E-value=0.00011 Score=75.08 Aligned_cols=36 Identities=25% Similarity=0.269 Sum_probs=32.2
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
+|.+|+|+||+||||||++..|++. .+..+|++|.+
T Consensus 2 ~~~~i~i~GptgsGKt~la~~La~~-------~~~~iis~Ds~ 37 (322)
T 3exa_A 2 KEKLVAIVGPTAVGKTKTSVMLAKR-------LNGEVISGDSM 37 (322)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHT-------TTEEEEECCGG
T ss_pred CCcEEEEECCCcCCHHHHHHHHHHh-------CccceeecCcc
Confidence 5678999999999999999999987 46789999987
No 116
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.68 E-value=0.00016 Score=68.83 Aligned_cols=26 Identities=23% Similarity=0.438 Sum_probs=23.1
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcC
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
.++.++++.||+||||||+++.|+..
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhh
Confidence 46778999999999999999999864
No 117
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=97.66 E-value=0.0005 Score=64.69 Aligned_cols=36 Identities=17% Similarity=0.353 Sum_probs=30.2
Q ss_pred cEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccc
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFK 257 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR 257 (513)
..+|.|.|++||||||+++.|++. .++.++|.|.++
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~-------lg~~~~D~~~~~ 41 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEH-------YNIPLYSKELLD 41 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH-------TTCCEECHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHH-------hCcCEECHHHHH
Confidence 458999999999999999999997 467788966554
No 118
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.64 E-value=0.00036 Score=66.80 Aligned_cols=27 Identities=30% Similarity=0.466 Sum_probs=22.4
Q ss_pred CCCcEEEEEecCCCCchHHHHHHHhcC
Q 044777 212 DRSPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 212 ~~~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
.....++.+.|||||||||+.+.|...
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 345679999999999999999999764
No 119
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=97.55 E-value=0.0018 Score=62.42 Aligned_cols=38 Identities=18% Similarity=0.238 Sum_probs=32.7
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKE 258 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~ 258 (513)
.+.+|.|.|++||||||+++.|++. .++.+++.|.++.
T Consensus 13 ~~~iI~i~g~~gsGk~~i~~~la~~-------lg~~~~d~~~~~~ 50 (223)
T 3hdt_A 13 KNLIITIEREYGSGGRIVGKKLAEE-------LGIHFYDDDILKL 50 (223)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHH-------HTCEEECHHHHHH
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHH-------cCCcEEcHHHHHH
Confidence 4578999999999999999999987 4677899888763
No 120
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.54 E-value=3.8e-05 Score=69.90 Aligned_cols=38 Identities=29% Similarity=0.469 Sum_probs=32.3
Q ss_pred CCCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccc
Q 044777 212 DRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFK 257 (513)
Q Consensus 212 ~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR 257 (513)
..+|.+|.|.|++||||||+++.|++. ++.+|+.|.+.
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~La~~--------g~~~id~d~~~ 42 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVAALLRSW--------GYPVLDLDALA 42 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHHHHHHHT--------TCCEEEHHHHH
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHC--------CCEEEcccHHH
Confidence 357889999999999999999999874 56789999874
No 121
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.52 E-value=0.0001 Score=69.54 Aligned_cols=26 Identities=35% Similarity=0.567 Sum_probs=17.5
Q ss_pred CCcEEEEEecCCCCchHHHHHHHh-cC
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDIL-KE 238 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll-~~ 238 (513)
.++.++.+.|||||||||+++.|. ..
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp ECCCEEEEECSCC----CHHHHHHC--
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 345689999999999999999998 53
No 122
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=97.51 E-value=0.0038 Score=58.50 Aligned_cols=84 Identities=20% Similarity=0.210 Sum_probs=44.7
Q ss_pred EEEEecCCCCchHHHHHHHhcCcccccCCCCeEEe-ccc--ccccchhhhhhhhccccCchhhHHHHHhHhHH-HHHHHH
Q 044777 217 LLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVI-EAD--AFKESDVIYRALSSRSHVDMLQTAELVHQSST-DAASSL 292 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvI-naD--efR~~~p~y~~l~~~G~~Dp~qaae~v~~eAt-rlA~~l 292 (513)
+|.+-|+-||||||.++.|.+. +...+..+++. .|+ .+.+.. ..-+.. +..+|.. +..-..+. ......
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~--L~~~g~~v~~treP~~t~~~~~i--r~~l~~-~~~~~~~--~~ll~~a~r~~~~~~ 74 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQY--LEKRGKKVILKREPGGTETGEKI--RKILLE-EEVTPKA--ELFLFLASRNLLVTE 74 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCSSHHHHHH--HHHHHH-SCCCHHH--HHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH--HHHCCCcEEEEECCCCCcHHHHH--HHHhhc-ccCChHH--HHHHHHHHHHHHHHH
Confidence 5788999999999999988764 33334455444 222 111110 000111 1123322 11111122 222345
Q ss_pred HHHHHHCCCcEEEEC
Q 044777 293 LVTALNEGRDVIMDG 307 (513)
Q Consensus 293 i~~aL~~GrsVIlDt 307 (513)
+..++++|..||.|-
T Consensus 75 I~~~L~~g~~Vi~DR 89 (197)
T 3hjn_A 75 IKQYLSEGYAVLLDR 89 (197)
T ss_dssp HHHHHTTTCEEEEES
T ss_pred HHHHHHCCCeEEecc
Confidence 778999999999994
No 123
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.39 E-value=0.00037 Score=63.43 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=23.1
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcC
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
+|.+|++.|++||||||+++.|.+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 5678999999999999999999986
No 124
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=97.34 E-value=0.00042 Score=72.99 Aligned_cols=35 Identities=26% Similarity=0.437 Sum_probs=30.2
Q ss_pred cEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
|.+|+|+||+||||||++..|++. .+..+|++|.+
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~-------~~~~iis~Ds~ 36 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQK-------FNGEVINSDSM 36 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHH-------HTEEEEECCTT
T ss_pred CcEEEEECcchhhHHHHHHHHHHH-------CCCeEeecCcc
Confidence 568999999999999999999987 35578999974
No 125
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.30 E-value=0.0021 Score=62.94 Aligned_cols=36 Identities=25% Similarity=0.339 Sum_probs=30.8
Q ss_pred cEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccc
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFK 257 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR 257 (513)
...|++.|+|||||||+++.|+.. .+..+++.|.+.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~-------lg~~~~d~d~~~ 83 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARS-------LGYTFFDCDTLI 83 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHH-------HTCEEEEHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh-------cCCcEEeCcHHH
Confidence 457899999999999999999986 366799999874
No 126
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.21 E-value=0.00092 Score=72.68 Aligned_cols=44 Identities=25% Similarity=0.438 Sum_probs=33.1
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCC-CeEEeccccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAG-NAVVIEADAFKE 258 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~-~aVvInaDefR~ 258 (513)
.++.++.|.|+|||||||+++.|+.. ....++ .+.+++.|.++.
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~--L~~~~G~~i~~lDgD~~~~ 411 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAAR--LMEMGGRCVTLLDGDIVRR 411 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHH--HHTTCSSCEEEESSHHHHH
T ss_pred ccceEEEEECCCCChHHHHHHHHHHh--hcccCCceEEEECCcHHHH
Confidence 35689999999999999999999875 111122 355799999854
No 127
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.17 E-value=0.00078 Score=61.91 Aligned_cols=43 Identities=7% Similarity=0.135 Sum_probs=32.5
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKE 258 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~ 258 (513)
.+..+++.|+||+||||+++.++.. ....+..+++++.+.+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~~~~ 93 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACAR--ANELERRSFYIPLGIHAS 93 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEGGGGGG
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEHHHHHH
Confidence 3456789999999999999999875 222345677888877654
No 128
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.17 E-value=0.00012 Score=66.76 Aligned_cols=35 Identities=14% Similarity=0.252 Sum_probs=30.5
Q ss_pred EEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccccc
Q 044777 217 LLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKE 258 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~ 258 (513)
+|.|.|++||||||+++.|++. .++.+++.|.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~-------lg~~~~d~d~~~~ 38 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA-------LGVPYLSSGLLYR 38 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH-------HTCCEEEHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh-------cCCceeccchHHH
Confidence 7899999999999999999886 3567999999853
No 129
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.15 E-value=0.0017 Score=66.46 Aligned_cols=140 Identities=15% Similarity=0.065 Sum_probs=75.5
Q ss_pred cEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEec-ccccccchhhhhhhhccccCchhhHHHHHhHhHHHHHHHHH
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIE-ADAFKESDVIYRALSSRSHVDMLQTAELVHQSSTDAASSLL 293 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvIn-aDefR~~~p~y~~l~~~G~~Dp~qaae~v~~eAtrlA~~li 293 (513)
..++++.|+|||||||+.+.|+.. +.. ..+.+.|+ .+++.. +........ .+ + +.... ...........+
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~--~~~-~~g~I~ie~~~e~~~--~~~~~~v~~-v~-~-q~~~~-~~~~~~t~~~~i 245 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQE--IPF-DQRLITIEDVPELFL--PDHPNHVHL-FY-P-SEAKE-EENAPVTAATLL 245 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTT--SCT-TSCEEEEESSSCCCC--TTCSSEEEE-EC-C------------CCHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc--CCC-CceEEEECCccccCc--cccCCEEEE-ee-c-Ccccc-ccccccCHHHHH
Confidence 347899999999999999999875 432 34666775 333321 100000000 00 0 00000 000111123445
Q ss_pred HHHHHCCCcEEEECcCCChHHHHHHHHHHhhhhhcccccccccccccCCccccchhhhhhhhhhhhcccCCCCeEEEEEE
Q 044777 294 VTALNEGRDVIMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENYWDRIGEREQAQDGKMRKPYRIELVG 373 (513)
Q Consensus 294 ~~aL~~GrsVIlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Yw~~v~~a~~~~~~~~~~gYrI~Lv~ 373 (513)
..++..+-++++.+-.......+ +++.+ . .||...+.-
T Consensus 246 ~~~l~~~pd~~l~~e~r~~~~~~-~l~~l----------~-------------------------------~g~~~~l~t 283 (361)
T 2gza_A 246 RSCLRMKPTRILLAELRGGEAYD-FINVA----------A-------------------------------SGHGGSITS 283 (361)
T ss_dssp HHHTTSCCSEEEESCCCSTHHHH-HHHHH----------H-------------------------------TTCCSCEEE
T ss_pred HHHHhcCCCEEEEcCchHHHHHH-HHHHH----------h-------------------------------cCCCeEEEE
Confidence 66777777888877777654433 22212 1 122212222
Q ss_pred Ee-cChHHHHHHHHHHHHhc--CCcCchhHHHHHH
Q 044777 374 VV-CDAYLAVVRGIRRAIMC--RRAVRVKSQLKSH 405 (513)
Q Consensus 374 V~-~dpelAv~Rv~~Rv~~g--Gh~VP~~~il~r~ 405 (513)
++ .++..+..|+....... ||.+|.+.+++..
T Consensus 284 ~H~~~~~~~~~Rl~~l~~~~~~~~~~~~~~i~~~l 318 (361)
T 2gza_A 284 CHAGSCELTFERLALMVLQNRQGRQLPYEIIRRLL 318 (361)
T ss_dssp EECSSHHHHHHHHHHHHTTSTTGGGSCHHHHHHHH
T ss_pred ECCCCHHHHHHHHHHHHhccccccCCCHHHHHHHH
Confidence 33 57888899999888776 6799988886433
No 130
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.12 E-value=0.0011 Score=62.54 Aligned_cols=73 Identities=19% Similarity=0.256 Sum_probs=46.4
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHhcCCCCCCcccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcCcccccCCC
Q 044777 167 RFERVTKNLKVARVFTTLVEEMKAMGLAPNDDSQCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAG 246 (513)
Q Consensus 167 rf~r~~~~~~v~r~~~~~ve~~~~~~~~~~~~~~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~ 246 (513)
.|+.+.....+++.+.++++.++.-. .... .....|.-+++.|+||+||||+++.++... +.
T Consensus 4 ~~~~i~G~~~~~~~l~~~~~~~~~~~-----------~~~~--~g~~~~~~vll~G~~GtGKT~la~~la~~~-----~~ 65 (262)
T 2qz4_A 4 SFKDVAGMHEAKLEVREFVDYLKSPE-----------RFLQ--LGAKVPKGALLLGPPGCGKTLLAKAVATEA-----QV 65 (262)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCCC-------------------CCCCCEEEEESCTTSSHHHHHHHHHHHH-----TC
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHH-----------HHHH--cCCCCCceEEEECCCCCCHHHHHHHHHHHh-----CC
Confidence 46666667777777777774322110 0000 011345668899999999999999998861 35
Q ss_pred CeEEecccccc
Q 044777 247 NAVVIEADAFK 257 (513)
Q Consensus 247 ~aVvInaDefR 257 (513)
..+.+++..+.
T Consensus 66 ~~~~~~~~~~~ 76 (262)
T 2qz4_A 66 PFLAMAGAEFV 76 (262)
T ss_dssp CEEEEETTTTS
T ss_pred CEEEechHHHH
Confidence 66777777663
No 131
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.11 E-value=0.00028 Score=72.64 Aligned_cols=36 Identities=25% Similarity=0.465 Sum_probs=32.1
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
+|.+|+|+||+||||||++..|++. .+..+|+.|.+
T Consensus 6 m~~lI~I~GptgSGKTtla~~La~~-------l~~~iis~Ds~ 41 (340)
T 3d3q_A 6 KPFLIVIVGPTASGKTELSIEVAKK-------FNGEIISGDSM 41 (340)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH-------TTEEEEECCSS
T ss_pred CCceEEEECCCcCcHHHHHHHHHHH-------cCCceeccccc
Confidence 4579999999999999999999987 46789999987
No 132
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.08 E-value=0.00026 Score=65.27 Aligned_cols=39 Identities=18% Similarity=0.473 Sum_probs=30.6
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
.++.++.+.|+|||||||+++.|... + ++.+.+|+.|.+
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~--~---~~~i~~v~~d~~ 42 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALART--L---GERVALLPMDHY 42 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHH--H---GGGEEEEEGGGC
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH--h---CCCeEEEecCcc
Confidence 46789999999999999999999875 1 113678888876
No 133
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.06 E-value=0.00013 Score=69.59 Aligned_cols=36 Identities=22% Similarity=0.248 Sum_probs=28.2
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
+|.++++.|+|||||||+++.|++. .+...++.+.+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~-------lg~~~~~~G~i 61 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQN-------FGLQHLSSGHF 61 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH-------HCCCCEEHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH-------hCCeEecHHHH
Confidence 4789999999999999999999865 23345566555
No 134
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.90 E-value=0.00094 Score=65.60 Aligned_cols=34 Identities=21% Similarity=0.428 Sum_probs=27.4
Q ss_pred EEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 218 LFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 218 ILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
+++.||||+||||+++.++.. .+.+.+.+++..+
T Consensus 47 vlL~Gp~GtGKTtLakala~~-----~~~~~i~i~g~~l 80 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE-----SGLNFISVKGPEL 80 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH-----TTCEEEEEETTTT
T ss_pred EEEECCCCCcHHHHHHHHHHH-----cCCCEEEEEcHHH
Confidence 899999999999999999886 2345677776555
No 135
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.87 E-value=0.0008 Score=67.02 Aligned_cols=44 Identities=23% Similarity=0.367 Sum_probs=33.4
Q ss_pred CCCcEEEEEecCCCCchHHHHHHHhcCcccc--cCCCCeEEecccccc
Q 044777 212 DRSPVLLFMGGGMGAGKSTVLKDILKEPFWA--GAAGNAVVIEADAFK 257 (513)
Q Consensus 212 ~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~--~~~~~aVvInaDefR 257 (513)
..++.++.|.|+|||||||+++.|... .. ...+.+.+|+.|.+.
T Consensus 77 ~~~g~iigI~G~~GsGKSTl~~~L~~~--l~~~~~~G~i~vi~~d~~~ 122 (308)
T 1sq5_A 77 QRIPYIISIAGSVAVGKSTTARVLQAL--LSRWPEHRRVELITTDGFL 122 (308)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHH--HTTSTTCCCEEEEEGGGGB
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH--HhhCCCCCeEEEEecCCcc
Confidence 356789999999999999999998764 21 123557778888774
No 136
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.87 E-value=0.00028 Score=70.17 Aligned_cols=43 Identities=33% Similarity=0.406 Sum_probs=30.4
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKE 258 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~ 258 (513)
++.+|.|+|++||||||+++.|.+. +...+.++.+|+.|.|-.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~--lg~~~~~~~vI~~D~~~r 46 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQI--FRREGVKAVSIEGDAFHR 46 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHH--HHHHTCCEEEEEGGGGBS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH--HhhcCCCeeEeecchhhc
Confidence 5678999999999999999999875 111123478999999853
No 137
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.85 E-value=0.0013 Score=69.66 Aligned_cols=74 Identities=15% Similarity=0.167 Sum_probs=50.1
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHhcCCCCCCcccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcCcccccCC
Q 044777 166 QRFERVTKNLKVARVFTTLVEEMKAMGLAPNDDSQCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAA 245 (513)
Q Consensus 166 ~rf~r~~~~~~v~r~~~~~ve~~~~~~~~~~~~~~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~ 245 (513)
..|+-+..-.++++.+.+.|+-.... -+.... ..-..|.=+|+.||||+|||+++++++.+ .+
T Consensus 178 ~t~~digGl~~~k~~l~e~v~~pl~~----------pe~f~~--~g~~~prGvLLyGPPGTGKTllAkAiA~e-----~~ 240 (434)
T 4b4t_M 178 ETYSDVGGLDKQIEELVEAIVLPMKR----------ADKFKD--MGIRAPKGALMYGPPGTGKTLLARACAAQ-----TN 240 (434)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHC----------SHHHHH--HCCCCCCEEEEESCTTSSHHHHHHHHHHH-----HT
T ss_pred CChHhcCcHHHHHHHHHHHHHHHHhC----------HHHHHh--CCCCCCCeeEEECcCCCCHHHHHHHHHHH-----hC
Confidence 36888888888888888777421110 000000 01235788999999999999999999987 23
Q ss_pred CCeEEeccccc
Q 044777 246 GNAVVIEADAF 256 (513)
Q Consensus 246 ~~aVvInaDef 256 (513)
.+++.|++..+
T Consensus 241 ~~f~~v~~s~l 251 (434)
T 4b4t_M 241 ATFLKLAAPQL 251 (434)
T ss_dssp CEEEEEEGGGG
T ss_pred CCEEEEehhhh
Confidence 56677777777
No 138
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.81 E-value=0.00096 Score=63.56 Aligned_cols=74 Identities=23% Similarity=0.281 Sum_probs=46.9
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHhcCCCCCCcccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcCcccccCC
Q 044777 166 QRFERVTKNLKVARVFTTLVEEMKAMGLAPNDDSQCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAA 245 (513)
Q Consensus 166 ~rf~r~~~~~~v~r~~~~~ve~~~~~~~~~~~~~~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~ 245 (513)
..|+.+.....+++.+.++++.++.- +.+... ....|.-+++.|+||+||||+++.++... +
T Consensus 9 ~~~~~i~G~~~~~~~l~~~~~~~~~~-----------~~~~~~--~~~~~~~vll~G~~GtGKT~la~~la~~~-----~ 70 (257)
T 1lv7_A 9 TTFADVAGCDEAKEEVAELVEYLREP-----------SRFQKL--GGKIPKGVLMVGPPGTGKTLLAKAIAGEA-----K 70 (257)
T ss_dssp CCGGGSCSCHHHHHHTHHHHHHHHCG-----------GGC-------CCCCEEEEECCTTSCHHHHHHHHHHHH-----T
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHhCH-----------HHHHHc--CCCCCCeEEEECcCCCCHHHHHHHHHHHc-----C
Confidence 35777777777777777777433211 011111 01234458899999999999999998761 3
Q ss_pred CCeEEecccccc
Q 044777 246 GNAVVIEADAFK 257 (513)
Q Consensus 246 ~~aVvInaDefR 257 (513)
.+.+.+++..+.
T Consensus 71 ~~~~~i~~~~~~ 82 (257)
T 1lv7_A 71 VPFFTISGSDFV 82 (257)
T ss_dssp CCEEEECSCSST
T ss_pred CCEEEEeHHHHH
Confidence 466778877663
No 139
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.76 E-value=0.0018 Score=68.64 Aligned_cols=73 Identities=18% Similarity=0.266 Sum_probs=49.6
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHhcCCCCCCcccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcCcccccCCC
Q 044777 167 RFERVTKNLKVARVFTTLVEEMKAMGLAPNDDSQCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAG 246 (513)
Q Consensus 167 rf~r~~~~~~v~r~~~~~ve~~~~~~~~~~~~~~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~ 246 (513)
+|+-+..-..+++.+.+.|+-.... .++... ..-..|.=+|+.||||+|||+++++++.+ .+.
T Consensus 179 ~~~digGl~~~k~~l~e~v~~pl~~----------p~~f~~--~g~~~prGvLL~GPPGtGKTllAkAiA~e-----~~~ 241 (437)
T 4b4t_L 179 TFDGIGGLTEQIRELREVIELPLKN----------PEIFQR--VGIKPPKGVLLYGPPGTGKTLLAKAVAAT-----IGA 241 (437)
T ss_dssp CSGGGCSCHHHHHHHHHHHHHHHHC----------HHHHHH--HCCCCCCEEEEESCTTSSHHHHHHHHHHH-----HTC
T ss_pred ChhHhCChHHHHHHHHHHHHHHHhC----------HHHHHh--CCCCCCCeEEEECCCCCcHHHHHHHHHHH-----hCC
Confidence 6777777778888888887421110 011100 01235788999999999999999999987 245
Q ss_pred CeEEeccccc
Q 044777 247 NAVVIEADAF 256 (513)
Q Consensus 247 ~aVvInaDef 256 (513)
+++.|++..+
T Consensus 242 ~~~~v~~s~l 251 (437)
T 4b4t_L 242 NFIFSPASGI 251 (437)
T ss_dssp EEEEEEGGGT
T ss_pred CEEEEehhhh
Confidence 6677777776
No 140
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.76 E-value=0.0014 Score=68.89 Aligned_cols=71 Identities=17% Similarity=0.261 Sum_probs=48.8
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHhcCCCCCCcccchhccccc---CCCCCcEEEEEecCCCCchHHHHHHHhcCcccc
Q 044777 166 QRFERVTKNLKVARVFTTLVEEMKAMGLAPNDDSQCTEVMAPVA---LGDRSPVLLFMGGGMGAGKSTVLKDILKEPFWA 242 (513)
Q Consensus 166 ~rf~r~~~~~~v~r~~~~~ve~~~~~~~~~~~~~~~~~vl~p~~---~~~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~ 242 (513)
-+|+-+..-.++++.+.+.|+- -+..|-. ..-..|.=+|+.||||+|||+++++++.+
T Consensus 145 v~~~dIgGl~~~k~~l~e~v~~---------------Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e---- 205 (405)
T 4b4t_J 145 STYDMVGGLTKQIKEIKEVIEL---------------PVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH---- 205 (405)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHH---------------HHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHH----
T ss_pred CCHHHhCCHHHHHHHHHHHHHH---------------HHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHh----
Confidence 3677777777788888877742 0111100 01235677899999999999999999987
Q ss_pred cCCCCeEEeccccc
Q 044777 243 GAAGNAVVIEADAF 256 (513)
Q Consensus 243 ~~~~~aVvInaDef 256 (513)
.+.+++.|++.++
T Consensus 206 -~~~~f~~v~~s~l 218 (405)
T 4b4t_J 206 -TDCKFIRVSGAEL 218 (405)
T ss_dssp -HTCEEEEEEGGGG
T ss_pred -hCCCceEEEhHHh
Confidence 2456677777766
No 141
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.69 E-value=0.0055 Score=59.27 Aligned_cols=73 Identities=14% Similarity=0.175 Sum_probs=45.8
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHhcCCCCCCcccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcCcccccCC
Q 044777 166 QRFERVTKNLKVARVFTTLVEEMKAMGLAPNDDSQCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAA 245 (513)
Q Consensus 166 ~rf~r~~~~~~v~r~~~~~ve~~~~~~~~~~~~~~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~ 245 (513)
..|+.+.....+++.+.+.++--... .++..... ..|.-+++.|+||+||||+++.++... +
T Consensus 18 ~~~~~i~G~~~~~~~l~~~i~~~~~~----------~~~~~~~~---~~~~~vll~Gp~GtGKT~la~~la~~~-----~ 79 (297)
T 3b9p_A 18 VEWTDIAGQDVAKQALQEMVILPSVR----------PELFTGLR---APAKGLLLFGPPGNGKTLLARAVATEC-----S 79 (297)
T ss_dssp CCGGGSCCCHHHHHHHHHHTHHHHHC----------GGGSCGGG---CCCSEEEEESSSSSCHHHHHHHHHHHT-----T
T ss_pred CCHHHhCChHHHHHHHHHHHHhhhhC----------HHHHhcCC---CCCCeEEEECcCCCCHHHHHHHHHHHh-----C
Confidence 35677777777777777666311100 11111111 235678999999999999999999861 3
Q ss_pred CCeEEeccccc
Q 044777 246 GNAVVIEADAF 256 (513)
Q Consensus 246 ~~aVvInaDef 256 (513)
...+.+++..+
T Consensus 80 ~~~~~i~~~~l 90 (297)
T 3b9p_A 80 ATFLNISAASL 90 (297)
T ss_dssp CEEEEEESTTT
T ss_pred CCeEEeeHHHH
Confidence 45566776655
No 142
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.69 E-value=0.0049 Score=59.15 Aligned_cols=38 Identities=18% Similarity=0.341 Sum_probs=29.6
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
.|.-+++.|+||+||||+++.++.. .+...+.+++..+
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~-----~~~~~~~v~~~~~ 87 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATE-----TNATFIRVVGSEL 87 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHH-----TTCEEEEEEGGGG
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH-----hCCCEEEEehHHH
Confidence 3456889999999999999999886 2345666776665
No 143
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.66 E-value=0.0015 Score=66.54 Aligned_cols=45 Identities=27% Similarity=0.420 Sum_probs=34.0
Q ss_pred CCCcEEEEEecCCCCchHHHHHHHhcCcc-cccCCCCeEEecccccc
Q 044777 212 DRSPVLLFMGGGMGAGKSTVLKDILKEPF-WAGAAGNAVVIEADAFK 257 (513)
Q Consensus 212 ~~~P~LILmaG~pGAGKSTla~~Ll~~~f-~~~~~~~aVvInaDefR 257 (513)
..+|.++-|+|+|||||||+++.|....- |. .++.+.+|.-|.+-
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~-~~~~v~~i~~D~f~ 134 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKALLSRWP-DHPNVEVITTDGFL 134 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHHHTTST-TCCCEEEEEGGGGB
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhcccC-CCCeEEEEeecccc
Confidence 56799999999999999999999865310 11 23467788888874
No 144
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.62 E-value=0.0043 Score=61.67 Aligned_cols=72 Identities=15% Similarity=0.176 Sum_probs=47.4
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHhcCCCCCCcccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcCcccccCCC
Q 044777 167 RFERVTKNLKVARVFTTLVEEMKAMGLAPNDDSQCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAG 246 (513)
Q Consensus 167 rf~r~~~~~~v~r~~~~~ve~~~~~~~~~~~~~~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~ 246 (513)
+|+.+.....+++.+.+.+...... .+... .....|.-+++.|+||+|||++++.++.. .+.
T Consensus 16 ~~~di~G~~~~~~~l~~~i~~~~~~----------~~~~~---~~~~~~~~vLl~GppGtGKT~la~aia~~-----~~~ 77 (322)
T 3eie_A 16 KWEDVAGLEGAKEALKEAVILPVKF----------PHLFK---GNRKPTSGILLYGPPGTGKSYLAKAVATE-----ANS 77 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHC----------GGGCC---TTCCCCCEEEEECSSSSCHHHHHHHHHHH-----HTC
T ss_pred CHHHhcChHHHHHHHHHHHHHHHhC----------HHHHh---cCCCCCCeEEEECCCCCcHHHHHHHHHHH-----HCC
Confidence 5777777777777777777422111 11111 11234567899999999999999999886 235
Q ss_pred CeEEeccccc
Q 044777 247 NAVVIEADAF 256 (513)
Q Consensus 247 ~aVvInaDef 256 (513)
+++.|++.++
T Consensus 78 ~~~~v~~~~l 87 (322)
T 3eie_A 78 TFFSVSSSDL 87 (322)
T ss_dssp EEEEEEHHHH
T ss_pred CEEEEchHHH
Confidence 6667777665
No 145
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.56 E-value=0.0034 Score=60.83 Aligned_cols=43 Identities=16% Similarity=0.230 Sum_probs=31.9
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKE 258 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~ 258 (513)
.+..+++.|+||+||||+++.++... .......+.++...+..
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~~--~~~~~~~~~~~~~~~~~ 88 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAATL--FDTEEAMIRIDMTEYME 88 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHHH--HSCGGGEEEEEGGGCCS
T ss_pred CceEEEEECCCCcCHHHHHHHHHHHH--cCCCcceEEeecccccc
Confidence 34578999999999999999998762 12234577888877643
No 146
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.53 E-value=0.0041 Score=66.57 Aligned_cols=95 Identities=13% Similarity=0.225 Sum_probs=57.5
Q ss_pred hhhHHHHHhhcCCCchhhhhHHHHHHHHHhHHHHhhhhhhHHHHHHHHHHHH-------HHHhcCCCCCCcccchhcccc
Q 044777 136 HADLMISQVLNSDAEPKKKLKHIVMQATREQRFERVTKNLKVARVFTTLVEE-------MKAMGLAPNDDSQCTEVMAPV 208 (513)
Q Consensus 136 ~~~~li~~~l~~~~~~~~~~~~~v~~a~r~~rf~r~~~~~~v~r~~~~~ve~-------~~~~~~~~~~~~~~~~vl~p~ 208 (513)
+.++.|...|..+..|.+.+-. ++..=.-+|+-+..-..+++.+.+.|+- ++..|
T Consensus 178 ~~~~~i~~~lp~~~d~~v~~m~--v~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~G---------------- 239 (467)
T 4b4t_H 178 RSKYNIELPLPPRIDPSVTMMT--VEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLG---------------- 239 (467)
T ss_dssp TTSCCCCCSSCSSSCCCCCCCE--EESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHT----------------
T ss_pred cCcceeeecCCCccCCccceee--ecCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCC----------------
Confidence 4445555556555554332110 0111113566666666677777766632 11222
Q ss_pred cCCCCCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 209 ALGDRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 209 ~~~~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
-..|.=+|+.||||+|||+++++++.+ .+.+++.|++.++
T Consensus 240 ---i~pprGILLyGPPGTGKTlLAkAiA~e-----~~~~fi~vs~s~L 279 (467)
T 4b4t_H 240 ---IDPPKGILLYGPPGTGKTLCARAVANR-----TDATFIRVIGSEL 279 (467)
T ss_dssp ---CCCCSEEEECSCTTSSHHHHHHHHHHH-----HTCEEEEEEGGGG
T ss_pred ---CCCCCceEeeCCCCCcHHHHHHHHHhc-----cCCCeEEEEhHHh
Confidence 236778999999999999999999987 2356667777776
No 147
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.53 E-value=0.0043 Score=65.87 Aligned_cols=101 Identities=18% Similarity=0.262 Sum_probs=61.3
Q ss_pred hhHHHHHhhcCCCchhhhhHHHHHHHHHhHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCCCCcccchhcccccCCCCCcE
Q 044777 137 ADLMISQVLNSDAEPKKKLKHIVMQATREQRFERVTKNLKVARVFTTLVEEMKAMGLAPNDDSQCTEVMAPVALGDRSPV 216 (513)
Q Consensus 137 ~~~li~~~l~~~~~~~~~~~~~v~~a~r~~rf~r~~~~~~v~r~~~~~ve~~~~~~~~~~~~~~~~~vl~p~~~~~~~P~ 216 (513)
.++.|..+|..+..|.++ .+.++..=.-+|+-+..-.++++.+.+.|+-...- + +.... ..-..|.
T Consensus 152 ~~~~~~~~l~~~~d~~~~--~~~~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~-------p---e~f~~--~Gi~~pr 217 (437)
T 4b4t_I 152 KTMSIVGVLQDDADPMVS--VMKMDKSPTESYSDIGGLESQIQEIKESVELPLTH-------P---ELYEE--MGIKPPK 217 (437)
T ss_dssp TTCCEEEEECCCSSCCCC--CCEEESSCCCCGGGTCSCHHHHHHHHHHHHHHHHC-------C---HHHHH--HTCCCCS
T ss_pred cCccceeecCCccCCcce--eeeeccCCCCcceecCcHHHHHHHHHHHHHHHHhC-------H---HHHHh--CCCCCCC
Confidence 344444555555443322 12222222348888888888888888888531110 0 00000 0123577
Q ss_pred EEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 217 LLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
=+|+.||||+|||+++++++.+ .+.+++.|++.++
T Consensus 218 GvLLyGPPGTGKTlLAkAiA~e-----~~~~fi~v~~s~l 252 (437)
T 4b4t_I 218 GVILYGAPGTGKTLLAKAVANQ-----TSATFLRIVGSEL 252 (437)
T ss_dssp EEEEESSTTTTHHHHHHHHHHH-----HTCEEEEEESGGG
T ss_pred CCceECCCCchHHHHHHHHHHH-----hCCCEEEEEHHHh
Confidence 8999999999999999999987 2456677777777
No 148
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.51 E-value=0.0015 Score=65.41 Aligned_cols=73 Identities=14% Similarity=0.101 Sum_probs=47.3
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHhcCCCCCCcccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcCcccccCCC
Q 044777 167 RFERVTKNLKVARVFTTLVEEMKAMGLAPNDDSQCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAG 246 (513)
Q Consensus 167 rf~r~~~~~~v~r~~~~~ve~~~~~~~~~~~~~~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~ 246 (513)
+|+.+.....+++.+.+.|+.-... .++.. .....|.-+++.||||+||||+++.++.+. .+.
T Consensus 10 ~~~di~G~~~~k~~l~~~v~~p~~~----------~~~~~---~~~~~~~~iLL~GppGtGKT~la~ala~~~----~~~ 72 (322)
T 1xwi_A 10 KWSDVAGLEGAKEALKEAVILPIKF----------PHLFT---GKRTPWRGILLFGPPGTGKSYLAKAVATEA----NNS 72 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHC----------GGGSC---TTCCCCSEEEEESSSSSCHHHHHHHHHHHT----TSC
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHhC----------HHHHh---CCCCCCceEEEECCCCccHHHHHHHHHHHc----CCC
Confidence 5677777777888887777421111 11111 112345678999999999999999999861 134
Q ss_pred CeEEeccccc
Q 044777 247 NAVVIEADAF 256 (513)
Q Consensus 247 ~aVvInaDef 256 (513)
+++.|++.++
T Consensus 73 ~~~~i~~~~l 82 (322)
T 1xwi_A 73 TFFSISSSDL 82 (322)
T ss_dssp EEEEEECCSS
T ss_pred cEEEEEhHHH
Confidence 5666777665
No 149
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.51 E-value=0.0027 Score=62.66 Aligned_cols=38 Identities=24% Similarity=0.334 Sum_probs=29.7
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
.|.-+++.|+||+||||+++.++.. .+.+.+.|++..+
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~-----~~~~~i~v~~~~l 85 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANE-----CQANFISIKGPEL 85 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHH-----TTCEEEEECHHHH
T ss_pred CCceEEEECCCCcCHHHHHHHHHHH-----hCCCEEEEEhHHH
Confidence 4567899999999999999999986 2355666776555
No 150
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=96.50 E-value=0.0022 Score=69.22 Aligned_cols=74 Identities=8% Similarity=0.101 Sum_probs=47.7
Q ss_pred HHHHHHHHHhcCCCC---CCcccchhcccccCC-CCCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccc
Q 044777 182 TTLVEEMKAMGLAPN---DDSQCTEVMAPVALG-DRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADA 255 (513)
Q Consensus 182 ~~~ve~~~~~~~~~~---~~~~~~~vl~p~~~~-~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDe 255 (513)
.|.|.++...|..+. ..+++.++++...++ ..++..|++.|++||||||+++.|++...+...+..+.++++|.
T Consensus 358 gt~IR~~Lr~G~~~P~~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 358 GTELRRRLRVGGEIPEWFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp HHHHHHHHHHTCCCCTTTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred HHHHHHHHhCCCCCCccccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 455666656665442 334445555444333 45678999999999999999999998732201123456888887
No 151
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.50 E-value=0.0072 Score=63.84 Aligned_cols=73 Identities=15% Similarity=0.224 Sum_probs=46.9
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHhcCCCCCCcccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcCcccccCCC
Q 044777 167 RFERVTKNLKVARVFTTLVEEMKAMGLAPNDDSQCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAG 246 (513)
Q Consensus 167 rf~r~~~~~~v~r~~~~~ve~~~~~~~~~~~~~~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~ 246 (513)
.|+-+..-.++++.+.+.|+-...- .+.... ..-..|.=+++.||||+|||+++++++.+ .+.
T Consensus 170 ~~~digGl~~~k~~l~e~v~~pl~~----------p~~~~~--~g~~~prGiLL~GPPGtGKT~lakAiA~~-----~~~ 232 (428)
T 4b4t_K 170 TYADVGGLDMQKQEIREAVELPLVQ----------ADLYEQ--IGIDPPRGVLLYGPPGTGKTMLVKAVANS-----TKA 232 (428)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHC----------HHHHHH--HCCCCCCEEEEESCTTTTHHHHHHHHHHH-----HTC
T ss_pred CHHHhccHHHHHHHHHHHHHHHHhC----------HHHHHh--CCCCCCceEEEECCCCCCHHHHHHHHHHH-----hCC
Confidence 6666666667777777666421110 000000 01235778999999999999999999987 235
Q ss_pred CeEEeccccc
Q 044777 247 NAVVIEADAF 256 (513)
Q Consensus 247 ~aVvInaDef 256 (513)
+++.|++.++
T Consensus 233 ~~~~v~~~~l 242 (428)
T 4b4t_K 233 AFIRVNGSEF 242 (428)
T ss_dssp EEEEEEGGGT
T ss_pred CeEEEecchh
Confidence 6667777666
No 152
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.50 E-value=0.0026 Score=60.39 Aligned_cols=34 Identities=18% Similarity=0.339 Sum_probs=26.9
Q ss_pred EEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 218 LFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 218 ILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
+++.|+||+||||+++.++... ..+.+.+++..+
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~-----~~~~i~~~~~~~ 85 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEA-----RVPFITASGSDF 85 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT-----TCCEEEEEHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh-----CCCEEEeeHHHH
Confidence 8899999999999999998761 245666766554
No 153
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.47 E-value=0.0012 Score=60.48 Aligned_cols=41 Identities=10% Similarity=0.199 Sum_probs=29.8
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
...++++.|+|||||||++..++.. ....+..+.+++.+.-
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~--~~~~~~~v~~~~~~~~ 62 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAK--GLRDGDPCIYVTTEES 62 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHH--HHHHTCCEEEEESSSC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH--HHHCCCeEEEEEcccC
Confidence 3468999999999999999999853 1122356677776553
No 154
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.46 E-value=0.0013 Score=64.74 Aligned_cols=69 Identities=14% Similarity=0.262 Sum_probs=49.6
Q ss_pred HHHHHHhHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCCCCcccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcC
Q 044777 159 VMQATREQRFERVTKNLKVARVFTTLVEEMKAMGLAPNDDSQCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 159 v~~a~r~~rf~r~~~~~~v~r~~~~~ve~~~~~~~~~~~~~~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
..+..|-..|+.+.....+.+.+...++ ....|.+++++|+||+||||+++.++..
T Consensus 16 ~~~k~rP~~~~~ivg~~~~~~~l~~~l~------------------------~~~~~~~~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 16 LEQKYRPSTIDECILPAFDKETFKSITS------------------------KGKIPHIILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp HHHHSCCCSTTTSCCCHHHHHHHHHHHH------------------------TTCCCSEEEECSSTTSSHHHHHHHHHHH
T ss_pred HHHhhCCCCHHHHhCcHHHHHHHHHHHH------------------------cCCCCeEEEeeCcCCCCHHHHHHHHHHH
Confidence 3445555678888888887777777772 2345678999999999999999999886
Q ss_pred cccccCCCCeEEeccccc
Q 044777 239 PFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 239 ~f~~~~~~~aVvInaDef 256 (513)
. +..++.+|+...
T Consensus 72 l-----~~~~~~i~~~~~ 84 (324)
T 3u61_B 72 V-----NADMMFVNGSDC 84 (324)
T ss_dssp T-----TEEEEEEETTTC
T ss_pred h-----CCCEEEEccccc
Confidence 1 244556665443
No 155
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.43 E-value=0.0049 Score=63.96 Aligned_cols=27 Identities=19% Similarity=0.276 Sum_probs=23.8
Q ss_pred CCCcEEEEEecCCCCchHHHHHHHhcC
Q 044777 212 DRSPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 212 ~~~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
-..+.++++.|+|||||||+++.++..
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 346779999999999999999999875
No 156
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.43 E-value=0.0023 Score=63.78 Aligned_cols=44 Identities=23% Similarity=0.423 Sum_probs=31.4
Q ss_pred CCCcEEEEEecCCCCchHHHHHHHhcCcccccCC--CCeEEe-cccccc
Q 044777 212 DRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAA--GNAVVI-EADAFK 257 (513)
Q Consensus 212 ~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~--~~aVvI-naDefR 257 (513)
..+|.+|.|+|++||||||+++.|... +...+ .+.+.+ .-|.|-
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~--l~~~g~~~~~~~iv~~D~f~ 74 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNH--LMEKYGGEKSIGYASIDDFY 74 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHH--HHHHHGGGSCEEEEEGGGGB
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH--hhhcCCCCceEEEecccccc
Confidence 357899999999999999999988764 21111 123444 888873
No 157
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.42 E-value=0.0026 Score=55.58 Aligned_cols=25 Identities=16% Similarity=0.315 Sum_probs=21.3
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcC
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
.+..+++.|++|+||||+++.++..
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH
Confidence 3456788999999999999999875
No 158
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.38 E-value=0.0019 Score=61.68 Aligned_cols=35 Identities=29% Similarity=0.413 Sum_probs=23.4
Q ss_pred hcccccCCCCCcEEEEEecCCCCchHHHHHHHhcC
Q 044777 204 VMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 204 vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
++..+--.-.++.++-|.|+|||||||+++.|+..
T Consensus 14 ~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 14 GTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp ---------CCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred eecceeccCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34333334457789999999999999999999764
No 159
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.36 E-value=0.0017 Score=60.32 Aligned_cols=41 Identities=15% Similarity=0.296 Sum_probs=30.7
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
...+++++|+|||||||++.+++.. ....+.++++++.+.-
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~--~~~~~~~v~~~~~e~~ 62 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWN--GLKMGEPGIYVALEEH 62 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHH--HHHTTCCEEEEESSSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEccCC
Confidence 4569999999999999998888654 1123467788877654
No 160
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.36 E-value=0.0012 Score=61.27 Aligned_cols=23 Identities=43% Similarity=0.743 Sum_probs=20.2
Q ss_pred cEEEEEecCCCCchHHHHHHHhc
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILK 237 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~ 237 (513)
+.++.+.|||||||||+++.|..
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45789999999999999999976
No 161
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.35 E-value=0.0013 Score=63.37 Aligned_cols=27 Identities=22% Similarity=0.251 Sum_probs=23.6
Q ss_pred CCCcEEEEEecCCCCchHHHHHHHhcC
Q 044777 212 DRSPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 212 ~~~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
..+|.+|+|.|++||||||+++.|.+.
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHh
Confidence 467899999999999999999999886
No 162
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.35 E-value=0.0027 Score=64.25 Aligned_cols=38 Identities=24% Similarity=0.326 Sum_probs=30.2
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
.|.-+++.|+||+||||+++.++.. .+..++.|++.++
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~-----~~~~~~~i~~~~l 153 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQ-----SGATFFSISASSL 153 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHH-----TTCEEEEEEGGGG
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH-----cCCeEEEEehHHh
Confidence 4567899999999999999999886 2345667777665
No 163
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.31 E-value=0.0016 Score=60.64 Aligned_cols=42 Identities=17% Similarity=0.253 Sum_probs=29.0
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
...++.+.|+|||||||+++.++..... ..+.+.++++.+..
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~~~-~~~~~~~~~~~~~~ 70 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAE-EYGEPGVFVTLEER 70 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHH-HHCCCEEEEESSSC
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH-hCCCeEEEEEccCC
Confidence 5569999999999999999988732110 12345666666543
No 164
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.29 E-value=0.0041 Score=60.20 Aligned_cols=34 Identities=18% Similarity=0.339 Sum_probs=26.7
Q ss_pred EEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 218 LFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 218 ILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
+++.|+||+||||+++.++... ..+.+.+++..+
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~-----~~~~i~~~~~~~ 109 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEA-----RVPFITASGSDF 109 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT-----TCCEEEEEHHHH
T ss_pred EEEECCCcChHHHHHHHHHHHc-----CCCEEEecHHHH
Confidence 8899999999999999998761 245666665544
No 165
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.25 E-value=0.0021 Score=59.60 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=22.2
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcC
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
....++.+.|+|||||||+++.|...
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 45678999999999999999999764
No 166
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.25 E-value=0.0021 Score=58.77 Aligned_cols=40 Identities=23% Similarity=0.369 Sum_probs=29.7
Q ss_pred cEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
|.-+++.|+||+||||+++.++.. ....+..+++++..++
T Consensus 54 ~~~~~l~G~~GtGKT~la~~i~~~--~~~~~~~~~~~~~~~~ 93 (202)
T 2w58_A 54 MKGLYLHGSFGVGKTYLLAAIANE--LAKRNVSSLIVYVPEL 93 (202)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH--HHTTTCCEEEEEHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEhHHH
Confidence 456788999999999999999875 2223456667777655
No 167
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.24 E-value=0.0019 Score=63.84 Aligned_cols=40 Identities=25% Similarity=0.403 Sum_probs=32.8
Q ss_pred CCCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 212 DRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 212 ~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
...|..+++.||||+|||++++.++... +..++.+++..+
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l-----~~~~i~v~~~~l 72 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKM-----GINPIMMSAGEL 72 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHH-----TCCCEEEEHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh-----CCCEEEEeHHHh
Confidence 3568899999999999999999999872 456778877666
No 168
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.20 E-value=0.003 Score=55.49 Aligned_cols=24 Identities=17% Similarity=0.295 Sum_probs=20.7
Q ss_pred cEEEEEecCCCCchHHHHHHHhcC
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
+..+++.|++|+||||+++.++..
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 445689999999999999999875
No 169
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.17 E-value=0.0024 Score=58.41 Aligned_cols=37 Identities=16% Similarity=0.179 Sum_probs=29.9
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADA 255 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDe 255 (513)
...++++.|+|||||||++..++.. .+.++++++.+.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~~-----~~~~v~~i~~~~ 55 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGLL-----SGKKVAYVDTEG 55 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHH-----HCSEEEEEESSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH-----cCCcEEEEECCC
Confidence 4569999999999999999999862 245777887765
No 170
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.16 E-value=0.014 Score=62.30 Aligned_cols=73 Identities=22% Similarity=0.292 Sum_probs=46.7
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHhcCCCCCCcccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcCcccccCCC
Q 044777 167 RFERVTKNLKVARVFTTLVEEMKAMGLAPNDDSQCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAG 246 (513)
Q Consensus 167 rf~r~~~~~~v~r~~~~~ve~~~~~~~~~~~~~~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~ 246 (513)
+|+.+.....+++.+.++++-++.- +.+... ....|.-+++.||||+||||+++.++.. .+.
T Consensus 14 ~f~di~G~~~~~~~l~e~v~~l~~~-----------~~~~~~--g~~~p~gvLL~GppGtGKT~Laraia~~-----~~~ 75 (476)
T 2ce7_A 14 TFKDVGGAEEAIEELKEVVEFLKDP-----------SKFNRI--GARMPKGILLVGPPGTGKTLLARAVAGE-----ANV 75 (476)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCT-----------HHHHTT--TCCCCSEEEEECCTTSSHHHHHHHHHHH-----HTC
T ss_pred CHHHhCCcHHHHHHHHHHHHHhhCh-----------HHHhhc--CCCCCCeEEEECCCCCCHHHHHHHHHHH-----cCC
Confidence 5777777777777777777433210 011100 1123444889999999999999999886 135
Q ss_pred CeEEecccccc
Q 044777 247 NAVVIEADAFK 257 (513)
Q Consensus 247 ~aVvInaDefR 257 (513)
.++.+++.++.
T Consensus 76 ~f~~is~~~~~ 86 (476)
T 2ce7_A 76 PFFHISGSDFV 86 (476)
T ss_dssp CEEEEEGGGTT
T ss_pred CeeeCCHHHHH
Confidence 66777776663
No 171
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.16 E-value=0.0022 Score=57.72 Aligned_cols=41 Identities=17% Similarity=0.182 Sum_probs=29.0
Q ss_pred cEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
+..+++.|+||+||||+++.++... -...+..+++++..++
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~-~~~~g~~~~~~~~~~~ 78 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAI-YEKKGIRGYFFDTKDL 78 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHH-HHHSCCCCCEEEHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH-HHHcCCeEEEEEHHHH
Confidence 5678999999999999999987641 1112335566776665
No 172
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.12 E-value=0.0027 Score=56.90 Aligned_cols=41 Identities=29% Similarity=0.404 Sum_probs=29.8
Q ss_pred cEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccc
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFK 257 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR 257 (513)
...+++.|+||+||||+++.+... ....+...++++...+.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~--~~~~g~~~~~~~~~~~~ 76 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQ--ALEAGKNAAYIDAASMP 76 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHH--HHTTTCCEEEEETTTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH--HHhcCCcEEEEcHHHhh
Confidence 446778999999999999999875 22223347778776653
No 173
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.11 E-value=0.0027 Score=58.40 Aligned_cols=42 Identities=17% Similarity=0.311 Sum_probs=28.9
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccc----cCCCCeEEecccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWA----GAAGNAVVIEADA 255 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~----~~~~~aVvInaDe 255 (513)
...++.+.|+|||||||+++.++.....+ ....+.++++.+.
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 56799999999999999999997521010 0123466776654
No 174
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.10 E-value=0.012 Score=57.08 Aligned_cols=44 Identities=20% Similarity=0.237 Sum_probs=29.6
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccc--cCCCCeEEecccccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWA--GAAGNAVVIEADAFK 257 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~--~~~~~aVvInaDefR 257 (513)
.+.-+++.|+||+||||+++.++...... .....++.+++..+.
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~ 111 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV 111 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence 34567899999999999998776641100 012356777877763
No 175
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.10 E-value=0.0031 Score=63.48 Aligned_cols=43 Identities=21% Similarity=0.297 Sum_probs=30.3
Q ss_pred CCCcEEEEEecCCCCchHHHHHHHhcCcccccC-C-CCeEEeccccc
Q 044777 212 DRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGA-A-GNAVVIEADAF 256 (513)
Q Consensus 212 ~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~-~-~~aVvInaDef 256 (513)
...+.++.|.|+|||||||+++.|... +... + ..+.+|.-|.+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gl--l~~~~G~~~v~~v~qd~~ 131 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQAL--LARWDHHPRVDLVTTDGF 131 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHH--HHTSTTCCCEEEEEGGGG
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhh--ccccCCCCeEEEEecCcc
Confidence 357889999999999999999988763 2111 1 24556666654
No 176
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.09 E-value=0.0043 Score=61.16 Aligned_cols=72 Identities=17% Similarity=0.216 Sum_probs=49.6
Q ss_pred HHHHHhHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCCCCcccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcCc
Q 044777 160 MQATREQRFERVTKNLKVARVFTTLVEEMKAMGLAPNDDSQCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKEP 239 (513)
Q Consensus 160 ~~a~r~~rf~r~~~~~~v~r~~~~~ve~~~~~~~~~~~~~~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~~ 239 (513)
.+..|-..|+.++....+.+.+...++..+..+ ..+.-+++.|+||+||||+++.++..
T Consensus 20 ~~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~~--------------------~~~~~vll~G~~GtGKT~la~~ia~~- 78 (338)
T 3pfi_A 20 ETSLRPSNFDGYIGQESIKKNLNVFIAAAKKRN--------------------ECLDHILFSGPAGLGKTTLANIISYE- 78 (338)
T ss_dssp ---CCCCSGGGCCSCHHHHHHHHHHHHHHHHTT--------------------SCCCCEEEECSTTSSHHHHHHHHHHH-
T ss_pred hhccCCCCHHHhCChHHHHHHHHHHHHHHHhcC--------------------CCCCeEEEECcCCCCHHHHHHHHHHH-
Confidence 445555678888888888888888775433221 12334789999999999999999876
Q ss_pred ccccCCCCeEEeccccc
Q 044777 240 FWAGAAGNAVVIEADAF 256 (513)
Q Consensus 240 f~~~~~~~aVvInaDef 256 (513)
.+..++.+++..+
T Consensus 79 ----~~~~~~~~~~~~~ 91 (338)
T 3pfi_A 79 ----MSANIKTTAAPMI 91 (338)
T ss_dssp ----TTCCEEEEEGGGC
T ss_pred ----hCCCeEEecchhc
Confidence 2356677777665
No 177
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.08 E-value=0.0035 Score=57.07 Aligned_cols=25 Identities=28% Similarity=0.789 Sum_probs=22.2
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcC
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
...++.+.|+|||||||+.+.++..
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999999875
No 178
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.08 E-value=0.0038 Score=56.30 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=21.8
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcC
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
.|..+++.|++|+||||+++.++..
T Consensus 44 ~~~~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 44 IHHAYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp CCSEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3458899999999999999999875
No 179
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.06 E-value=0.0039 Score=63.25 Aligned_cols=80 Identities=13% Similarity=0.169 Sum_probs=47.1
Q ss_pred HHHHHHhHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCCCCcccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcC
Q 044777 159 VMQATREQRFERVTKNLKVARVFTTLVEEMKAMGLAPNDDSQCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 159 v~~a~r~~rf~r~~~~~~v~r~~~~~ve~~~~~~~~~~~~~~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
+........|+.+.....+++.+.+.+..-... .++.. .....|.-+++.|+||+||||+++.++..
T Consensus 41 ~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~----------~~~~~---~~~~~~~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 41 ILSEKPNVKWEDVAGLEGAKEALKEAVILPVKF----------PHLFK---GNRKPTSGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp ------CCCGGGSCCGGGHHHHHHHHTHHHHHC----------GGGGC---SSCCCCCCEEEECSTTSCHHHHHHHHHHH
T ss_pred hcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhC----------HHHHh---cCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 333444557788877777777777776321110 11111 11223455788999999999999999986
Q ss_pred cccccCCCCeEEeccccc
Q 044777 239 PFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 239 ~f~~~~~~~aVvInaDef 256 (513)
. +.+++.|++.++
T Consensus 108 ~-----~~~~~~v~~~~l 120 (355)
T 2qp9_X 108 A-----NSTFFSVSSSDL 120 (355)
T ss_dssp H-----TCEEEEEEHHHH
T ss_pred h-----CCCEEEeeHHHH
Confidence 1 345566666555
No 180
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.03 E-value=0.0031 Score=58.18 Aligned_cols=22 Identities=32% Similarity=0.632 Sum_probs=19.3
Q ss_pred EEEEecCCCCchHHHHHHHhcC
Q 044777 217 LLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~ 238 (513)
.+.+.|+|||||||+++.++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999998764
No 181
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.02 E-value=0.0026 Score=60.00 Aligned_cols=26 Identities=35% Similarity=0.543 Sum_probs=22.3
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcC
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
..+.++.+.|||||||||+++.|+..
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 35668899999999999999999874
No 182
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=95.99 E-value=0.014 Score=56.01 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=23.0
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcC
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
++.+|++.|++||||||.++.|.+.
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~ 28 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKK 28 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5679999999999999999999886
No 183
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.99 E-value=0.0043 Score=59.70 Aligned_cols=42 Identities=24% Similarity=0.159 Sum_probs=31.0
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFK 257 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR 257 (513)
....++.+.|+|||||||+.+.++.- .. ...+-+.++...+.
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl--~~-p~~G~I~~~g~~~~ 70 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGCL--DK-PTEGEVYIDNIKTN 70 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTS--SC-CSEEEEEETTEECT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcC--CC-CCceEEEECCEEcc
Confidence 45668999999999999999999764 11 22456778775553
No 184
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.98 E-value=0.0055 Score=59.07 Aligned_cols=35 Identities=23% Similarity=0.424 Sum_probs=29.4
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
.+..++|.|++||||||++..|++. ++ .+|+.|..
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~-------g~-~iIsdDs~ 67 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQR-------GH-RLIADDRV 67 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTT-------TC-EEEESSEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh-------CC-eEEecchh
Confidence 4678999999999999999999987 23 67788765
No 185
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.96 E-value=0.017 Score=58.87 Aligned_cols=74 Identities=16% Similarity=0.211 Sum_probs=47.0
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHhcCCCCCCcccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcCcccccCC
Q 044777 166 QRFERVTKNLKVARVFTTLVEEMKAMGLAPNDDSQCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAA 245 (513)
Q Consensus 166 ~rf~r~~~~~~v~r~~~~~ve~~~~~~~~~~~~~~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~ 245 (513)
.+|+.+.....+++.+.+.+...... .++.... ...+.-+++.|+||+|||++++.++.. .+
T Consensus 112 ~~~~~iiG~~~~~~~l~~~~~~~~~~----------~~~~~~~---~~~~~~vLL~GppGtGKT~la~aia~~-----~~ 173 (389)
T 3vfd_A 112 VKFDDIAGQDLAKQALQEIVILPSLR----------PELFTGL---RAPARGLLLFGPPGNGKTMLAKAVAAE-----SN 173 (389)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHC----------TTTSCGG---GCCCSEEEEESSTTSCHHHHHHHHHHH-----TT
T ss_pred CChHHhCCHHHHHHHHHHHHHHhccC----------HHHhccc---CCCCceEEEECCCCCCHHHHHHHHHHh-----hc
Confidence 45677777777777776666322111 0111111 123557899999999999999999886 24
Q ss_pred CCeEEecccccc
Q 044777 246 GNAVVIEADAFK 257 (513)
Q Consensus 246 ~~aVvInaDefR 257 (513)
..++.+++..+.
T Consensus 174 ~~~~~v~~~~l~ 185 (389)
T 3vfd_A 174 ATFFNISAASLT 185 (389)
T ss_dssp CEEEEECSCCC-
T ss_pred CcEEEeeHHHhh
Confidence 566778887763
No 186
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.94 E-value=0.0038 Score=59.14 Aligned_cols=25 Identities=36% Similarity=0.494 Sum_probs=23.2
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcC
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
+|.+|++.|++||||||+++.|.+.
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999886
No 187
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.93 E-value=0.0038 Score=61.18 Aligned_cols=41 Identities=20% Similarity=0.331 Sum_probs=29.6
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
...++.+.|||||||||+.+.++.. +.....+-+.++.|.+
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~--~~~~~~G~I~~~g~~i 64 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDY--INQTKSYHIITIEDPI 64 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHH--HHHHCCCEEEEEESSC
T ss_pred CCCEEEEECCCCccHHHHHHHHHHh--CCCCCCCEEEEcCCcc
Confidence 4579999999999999999999864 3222134566666655
No 188
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.90 E-value=0.0069 Score=57.25 Aligned_cols=41 Identities=15% Similarity=0.264 Sum_probs=33.0
Q ss_pred CCCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccc
Q 044777 212 DRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADA 255 (513)
Q Consensus 212 ~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDe 255 (513)
..++.++++.|.+|+||||++..|+.. .. .+..+.+|+.|-
T Consensus 11 ~~~~~i~~~~GkgGvGKTTl~~~La~~--l~-~g~~v~vvd~D~ 51 (262)
T 1yrb_A 11 GMASMIVVFVGTAGSGKTTLTGEFGRY--LE-DNYKVAYVNLDT 51 (262)
T ss_dssp TCCCEEEEEECSTTSSHHHHHHHHHHH--HT-TTSCEEEEECCS
T ss_pred CcceEEEEEeCCCCCCHHHHHHHHHHH--HH-CCCeEEEEeCCC
Confidence 567889999999999999999999864 22 345677888884
No 189
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=95.90 E-value=0.0047 Score=58.45 Aligned_cols=27 Identities=30% Similarity=0.566 Sum_probs=23.9
Q ss_pred CCCcEEEEEecCCCCchHHHHHHHhcC
Q 044777 212 DRSPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 212 ~~~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
..++.++.+.|++||||||+++.|...
T Consensus 17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 17 GTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 456889999999999999999998764
No 190
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.85 E-value=0.0052 Score=57.09 Aligned_cols=42 Identities=17% Similarity=0.213 Sum_probs=30.1
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCccccc----CCCCeEEecccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAG----AAGNAVVIEADA 255 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~----~~~~aVvInaDe 255 (513)
...++.+.|+|||||||++..++....... .+.+.++|+.+.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 456999999999999999999987311110 135677887765
No 191
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.84 E-value=0.002 Score=61.40 Aligned_cols=36 Identities=19% Similarity=0.255 Sum_probs=27.2
Q ss_pred EEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccc
Q 044777 217 LLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFK 257 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR 257 (513)
-+++.|+||+||||+++.++... +...+.+++..+.
T Consensus 46 ~vll~G~~GtGKT~la~~la~~~-----~~~~~~v~~~~~~ 81 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGEA-----HVPFFSMGGSSFI 81 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHHH-----TCCCCCCCSCTTT
T ss_pred eEEEECCCCCcHHHHHHHHHHHh-----CCCEEEechHHHH
Confidence 37899999999999999998862 2345566666553
No 192
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.82 E-value=0.0044 Score=62.90 Aligned_cols=41 Identities=20% Similarity=0.208 Sum_probs=31.3
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADA 255 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDe 255 (513)
.++..+.+.|.||+||||++..|+.. +...+..+.+++.|-
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~--l~~~g~kV~vi~~Dp 117 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMH--LIERGHRVAVLAVDP 117 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHH--HHTTTCCEEEEEEC-
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHH--HHhCCCceEEEecCC
Confidence 46678899999999999999999764 223456677888873
No 193
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.81 E-value=0.0042 Score=55.72 Aligned_cols=23 Identities=30% Similarity=0.326 Sum_probs=20.4
Q ss_pred cEEEEEecCCCCchHHHHHHHhc
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILK 237 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~ 237 (513)
|-+.+|.|+|||||||+.+.|.-
T Consensus 26 ~g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 26 KGFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SSEEEEEECTTSSHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHH
Confidence 44889999999999999999865
No 194
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=95.79 E-value=0.0063 Score=63.73 Aligned_cols=74 Identities=14% Similarity=0.093 Sum_probs=44.6
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHhcCCCCCCcccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcCcccccCC
Q 044777 166 QRFERVTKNLKVARVFTTLVEEMKAMGLAPNDDSQCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAA 245 (513)
Q Consensus 166 ~rf~r~~~~~~v~r~~~~~ve~~~~~~~~~~~~~~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~ 245 (513)
.+|+.+.....+++.+.+.+..-... .++.. .....|.-+++.||||+||||+++.++... .+
T Consensus 131 ~~~~di~G~~~~k~~l~~~v~~p~~~----------~~~~~---~~~~~~~~vLL~GppGtGKT~lA~aia~~~----~~ 193 (444)
T 2zan_A 131 VKWSDVAGLEGAKEALKEAVILPIKF----------PHLFT---GKRTPWRGILLFGPPGTGKSYLAKAVATEA----NN 193 (444)
T ss_dssp CCGGGSCSCHHHHHHHHHHHTHHHHC----------TTTTS---GGGCCCSEEEEECSTTSSHHHHHHHHHHHC----CS
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhC----------HHHhh---ccCCCCceEEEECCCCCCHHHHHHHHHHHc----CC
Confidence 36677777777777777766210000 01111 001245678899999999999999999861 13
Q ss_pred CCeEEeccccc
Q 044777 246 GNAVVIEADAF 256 (513)
Q Consensus 246 ~~aVvInaDef 256 (513)
.+++.|++..+
T Consensus 194 ~~~~~v~~~~l 204 (444)
T 2zan_A 194 STFFSISSSDL 204 (444)
T ss_dssp SEEEEECCC--
T ss_pred CCEEEEeHHHH
Confidence 45666777665
No 195
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.79 E-value=0.0039 Score=62.45 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=21.8
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcC
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
.|..+++.||||+||||+++.++..
T Consensus 50 ~~~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 50 VLDHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCCCEEEESSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3456889999999999999999876
No 196
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.77 E-value=0.0081 Score=57.91 Aligned_cols=42 Identities=17% Similarity=0.386 Sum_probs=30.6
Q ss_pred CCCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 212 DRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 212 ~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
-....++.+.|+|||||||+.+.|+.- .. ...+-+.++...+
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~-p~~G~i~~~g~~~ 66 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTIFSLLERF--YQ-PTAGEITIDGQPI 66 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHHHHHHTTS--SC-CSBSCEEETTEES
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcC--CC-CCCcEEEECCEEh
Confidence 346679999999999999999999764 21 2245677765443
No 197
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.76 E-value=0.0073 Score=64.30 Aligned_cols=87 Identities=11% Similarity=0.046 Sum_probs=55.8
Q ss_pred HHHHHHHhHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCCCCcccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhc
Q 044777 158 IVMQATREQRFERVTKNLKVARVFTTLVEEMKAMGLAPNDDSQCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILK 237 (513)
Q Consensus 158 ~v~~a~r~~rf~r~~~~~~v~r~~~~~ve~~~~~~~~~~~~~~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~ 237 (513)
.-.+..|-..|+.+....++.+.+.+.++....-.. ...-.|.......+..+++.|+||+||||+++.++.
T Consensus 28 lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~--------~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~ 99 (516)
T 1sxj_A 28 LWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKK--------NSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQ 99 (516)
T ss_dssp CHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHH--------TTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhch--------hhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 445566667888888888888888777754322110 001111111123456889999999999999999998
Q ss_pred CcccccCCCCeEEecccccc
Q 044777 238 EPFWAGAAGNAVVIEADAFK 257 (513)
Q Consensus 238 ~~f~~~~~~~aVvInaDefR 257 (513)
.. +..++.+++..++
T Consensus 100 ~l-----~~~~i~in~s~~~ 114 (516)
T 1sxj_A 100 EL-----GYDILEQNASDVR 114 (516)
T ss_dssp HT-----TCEEEEECTTSCC
T ss_pred Hc-----CCCEEEEeCCCcc
Confidence 72 3456667776654
No 198
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.75 E-value=0.0076 Score=59.25 Aligned_cols=42 Identities=21% Similarity=0.237 Sum_probs=31.4
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFK 257 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR 257 (513)
....++.+.|+|||||||+.+.++.- .. ...+-+.++...+.
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl--~~-p~~G~I~~~g~~~~ 76 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTGY--LS-PSHGECHLLGQNLN 76 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTSS--SC-CSSCEEEETTEETT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcC--CC-CCCcEEEECCEECC
Confidence 35568999999999999999999864 21 23466788776554
No 199
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=95.73 E-value=0.067 Score=54.30 Aligned_cols=156 Identities=12% Similarity=0.042 Sum_probs=81.6
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccccchhhhhhhhccccCchhhHHHHHhHhHHHHHHHHH
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKESDVIYRALSSRSHVDMLQTAELVHQSSTDAASSLL 293 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~~~p~y~~l~~~G~~Dp~qaae~v~~eAtrlA~~li 293 (513)
.|++|++-|.-||||||.++.|... ... .++-++. + ..|...+... ++ ....
T Consensus 85 ~~vlIvfEG~DgAGKgt~Ik~L~e~--Ldp--rg~~V~~---~--~~Pt~eE~~~--~y-----------------l~R~ 136 (304)
T 3czq_A 85 KRVMAVFEGRDAAGKGGAIHATTAN--MNP--RSARVVA---L--TKPTETERGQ--WY-----------------FQRY 136 (304)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT--SCT--TTEEEEE---C--CSCCHHHHTS--CT-----------------THHH
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHH--hcc--cCCeEEE---e--CCcChHHHhc--hH-----------------HHHH
Confidence 6899999999999999999999886 211 1221111 1 1121111111 00 0112
Q ss_pred HHHH-HCCCcEEEECcCCChHHHHHHHHHHhhhhhcccccccccccccCCccccchhhhhhhhhhhhcccCCCCeEEEEE
Q 044777 294 VTAL-NEGRDVIMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENYWDRIGEREQAQDGKMRKPYRIELV 372 (513)
Q Consensus 294 ~~aL-~~GrsVIlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Yw~~v~~a~~~~~~~~~~gYrI~Lv 372 (513)
..++ ..|.-||+|-+.-+.-.++... | +-..+.|-+.+...+.=++-....|+.+.-+
T Consensus 137 ~~~LP~~G~IvIfDRswYs~v~~~rv~---------------g------~~~~~e~~~~~~~In~FE~~L~~~G~~~lKf 195 (304)
T 3czq_A 137 VATFPTAGEFVLFDRSWYNRAGVEPVM---------------G------FCTPDQYEQFLKEAPRFEEMIANEGIHLFKF 195 (304)
T ss_dssp HTTCCCTTCEEEEEECGGGGTTHHHHH---------------T------SSCHHHHHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred HHhcccCCeEEEEECCcchHHHHHHHh---------------c------CCCHHHHHHHHHHHHHHHHHHHhCCCeeEEE
Confidence 3344 7899999996553322112110 0 1111222222222211011123367666667
Q ss_pred EEecChHHHHHHHHHHHHhcCC--cC-chhHH-HHHHHHHHHHHHHhhcc
Q 044777 373 GVVCDAYLAVVRGIRRAIMCRR--AV-RVKSQ-LKSHKRFANAFLTYCQL 418 (513)
Q Consensus 373 ~V~~dpelAv~Rv~~Rv~~gGh--~V-P~~~i-l~r~~rf~~nf~~~~~l 418 (513)
++..+++....|...|...-.+ .+ |.+.. +..|.++...+..++..
T Consensus 196 ~L~Is~eeq~kR~~~R~~dp~k~Wk~s~~D~~~~~~~~~y~~a~~~ml~~ 245 (304)
T 3czq_A 196 WINIGREMQLKRFHDRRHDPLKIWKLSPMDIAALSKWDDYTGKRDRMLKE 245 (304)
T ss_dssp EEECCHHHHHHHHHHHHHCTTTGGGCCHHHHHGGGGHHHHHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHHhhcCcccccCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7889999999999888432121 22 33322 46667777777666654
No 200
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.72 E-value=0.017 Score=65.52 Aligned_cols=70 Identities=17% Similarity=0.305 Sum_probs=47.0
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHhcCCCCCCcccchhccccc---CCCCCcEEEEEecCCCCchHHHHHHHhcCccccc
Q 044777 167 RFERVTKNLKVARVFTTLVEEMKAMGLAPNDDSQCTEVMAPVA---LGDRSPVLLFMGGGMGAGKSTVLKDILKEPFWAG 243 (513)
Q Consensus 167 rf~r~~~~~~v~r~~~~~ve~~~~~~~~~~~~~~~~~vl~p~~---~~~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~ 243 (513)
.|+-+..-.++++.+.+.|+- -+..|-. ..-..|.=+|+.||||+|||++++.++.+
T Consensus 202 ~~~dIgGl~~~~~~l~e~v~~---------------pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~e----- 261 (806)
T 3cf2_A 202 GYDDIGGCRKQLAQIKEMVEL---------------PLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE----- 261 (806)
T ss_dssp CGGGCCSCCTTHHHHHHHHHH---------------HHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTT-----
T ss_pred ChhhhcCHHHHHHHHHHHHHH---------------HccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH-----
Confidence 566666666777777777631 1111111 11346888999999999999999999987
Q ss_pred CCCCeEEeccccc
Q 044777 244 AAGNAVVIEADAF 256 (513)
Q Consensus 244 ~~~~aVvInaDef 256 (513)
.+.+.+.|++.++
T Consensus 262 lg~~~~~v~~~~l 274 (806)
T 3cf2_A 262 TGAFFFLINGPEI 274 (806)
T ss_dssp TTCEEEEEEHHHH
T ss_pred hCCeEEEEEhHHh
Confidence 2345666776665
No 201
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.71 E-value=0.0054 Score=61.08 Aligned_cols=53 Identities=21% Similarity=0.381 Sum_probs=37.5
Q ss_pred HHHHhHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCCCCcccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcC
Q 044777 161 QATREQRFERVTKNLKVARVFTTLVEEMKAMGLAPNDDSQCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 161 ~a~r~~rf~r~~~~~~v~r~~~~~ve~~~~~~~~~~~~~~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
+..|-+.|..+.....+.+.++..++ ..+-|. +++.||||+||||+++.++..
T Consensus 17 ~k~rp~~~~~~~g~~~~~~~L~~~i~------------------------~g~~~~-~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 17 EKYRPETLDEVYGQNEVITTVRKFVD------------------------EGKLPH-LLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp HHTCCSSGGGCCSCHHHHHHHHHHHH------------------------TTCCCC-EEEECSSSSSHHHHHHHHHHH
T ss_pred HHhCCCcHHHhcCcHHHHHHHHHHHh------------------------cCCCce-EEEECCCCCCHHHHHHHHHHH
Confidence 34444567777766666666666662 122344 789999999999999999875
No 202
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.70 E-value=0.0035 Score=61.78 Aligned_cols=41 Identities=24% Similarity=0.316 Sum_probs=30.9
Q ss_pred cEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccc
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFK 257 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR 257 (513)
+.-+++.|+||+||||+++.++.. ....+..++.++++.+.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~--~~~~~~~~~~i~~~~~~ 77 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNE--AKKRGYRVIYSSADDFA 77 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHH--HHHTTCCEEEEEHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HHHCCCEEEEEEHHHHH
Confidence 445788999999999999999875 22224567888887763
No 203
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.68 E-value=0.0073 Score=60.42 Aligned_cols=23 Identities=43% Similarity=0.762 Sum_probs=20.6
Q ss_pred EEEEEecCCCCchHHHHHHHhcC
Q 044777 216 VLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 216 ~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
.++++.|++||||||+.+.|+..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHS
T ss_pred cEEEEEecCCCCHHHHHHHHHhh
Confidence 47888999999999999999865
No 204
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.67 E-value=0.0079 Score=52.83 Aligned_cols=36 Identities=19% Similarity=0.205 Sum_probs=26.6
Q ss_pred EEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 218 LFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 218 ILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
+++.|+||+|||++++.+.... ...+..++ +++..+
T Consensus 27 vll~G~~GtGKt~lA~~i~~~~--~~~~~~~v-~~~~~~ 62 (145)
T 3n70_A 27 VWLYGAPGTGRMTGARYLHQFG--RNAQGEFV-YRELTP 62 (145)
T ss_dssp EEEESSTTSSHHHHHHHHHHSS--TTTTSCCE-EEECCT
T ss_pred EEEECCCCCCHHHHHHHHHHhC--CccCCCEE-EECCCC
Confidence 5889999999999999998752 11234556 777655
No 205
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.67 E-value=0.0058 Score=56.78 Aligned_cols=24 Identities=17% Similarity=0.180 Sum_probs=20.7
Q ss_pred cEEEEEecCCCCchHHHHHHHhcC
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
+.++.++|++||||||++..|+..
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 447788899999999999999875
No 206
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=95.65 E-value=0.059 Score=54.41 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=22.6
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcC
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
..+..+++.|+||+||||+.+.+...
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~ 190 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTA 190 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35667889999999999999999875
No 207
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.61 E-value=0.0046 Score=58.99 Aligned_cols=40 Identities=25% Similarity=0.212 Sum_probs=29.1
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
...++.+.|+|||||||+.+.++.- .. ...+-+.++.-.+
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl--~~-p~~G~i~~~g~~~ 68 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLL--DA-PTEGKVFLEGKEV 68 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTS--SC-CSEEEEEETTEEC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC--CC-CCceEEEECCEEC
Confidence 4568899999999999999999764 11 2235677766444
No 208
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.61 E-value=0.006 Score=58.64 Aligned_cols=39 Identities=26% Similarity=0.446 Sum_probs=30.3
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFK 257 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR 257 (513)
.|.-+++.|+||+||||+++.++... +...+.+++..+.
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l-----~~~~~~i~~~~~~ 87 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLA-----NAPFIKVEATKFT 87 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH-----TCCEEEEEGGGGS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh-----CCCEEEEcchhcc
Confidence 34557889999999999999998862 3466778877764
No 209
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=95.58 E-value=0.07 Score=54.84 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=22.4
Q ss_pred CcEEEEEecCCCCchHHHH-HHHhcC
Q 044777 214 SPVLLFMGGGMGAGKSTVL-KDILKE 238 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla-~~Ll~~ 238 (513)
++..|.+.|+-||||||++ +.|.+.
T Consensus 11 ~~~~I~iEG~~GaGKTT~~~~~L~~~ 36 (341)
T 1osn_A 11 GVLRIYLDGAYGIGKTTAAEEFLHHF 36 (341)
T ss_dssp EEEEEEEEESSSSCTTHHHHHHHHTT
T ss_pred CceEEEEeCCCCCCHHHHHHHHHHHH
Confidence 4679999999999999999 888775
No 210
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.50 E-value=0.0066 Score=58.46 Aligned_cols=26 Identities=35% Similarity=0.552 Sum_probs=22.6
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcC
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
....++.+.|+|||||||+.+.|+.-
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45568999999999999999999764
No 211
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.48 E-value=0.013 Score=63.06 Aligned_cols=74 Identities=19% Similarity=0.254 Sum_probs=47.5
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHhcCCCCCCcccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcCcccccCC
Q 044777 166 QRFERVTKNLKVARVFTTLVEEMKAMGLAPNDDSQCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAA 245 (513)
Q Consensus 166 ~rf~r~~~~~~v~r~~~~~ve~~~~~~~~~~~~~~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~ 245 (513)
..|+.+.....++..+.+++.-++.- .++...- ...|.=+++.||||+||||+++.++.. .+
T Consensus 28 ~~f~dv~G~~~~k~~l~~lv~~l~~~-----------~~~~~lg--~~ip~GvLL~GppGtGKTtLaraIa~~-----~~ 89 (499)
T 2dhr_A 28 VTFKDVAGAEEAKEELKEIVEFLKNP-----------SRFHEMG--ARIPKGVLLVGPPGVGKTHLARAVAGE-----AR 89 (499)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCG-----------GGTTTTS--CCCCSEEEEECSSSSSHHHHHHHHHHH-----TT
T ss_pred CCHHHcCCcHHHHHHHHHHHHHhhch-----------hhhhhcc--CCCCceEEEECCCCCCHHHHHHHHHHH-----hC
Confidence 46777777777777777777543211 1111111 112333899999999999999999876 13
Q ss_pred CCeEEecccccc
Q 044777 246 GNAVVIEADAFK 257 (513)
Q Consensus 246 ~~aVvInaDefR 257 (513)
.+.+.+++..|.
T Consensus 90 ~~~i~i~g~~~~ 101 (499)
T 2dhr_A 90 VPFITASGSDFV 101 (499)
T ss_dssp CCEEEEEGGGGT
T ss_pred CCEEEEehhHHH
Confidence 567778776653
No 212
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.47 E-value=0.0083 Score=53.67 Aligned_cols=24 Identities=33% Similarity=0.459 Sum_probs=21.0
Q ss_pred CcEEEEEecCCCCchHHHHHHHhc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILK 237 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~ 237 (513)
.|-+.+|.|+|||||||+..++.-
T Consensus 22 ~~g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 22 KEGINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 367899999999999999998853
No 213
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.47 E-value=0.0066 Score=58.80 Aligned_cols=38 Identities=24% Similarity=0.197 Sum_probs=28.2
Q ss_pred EEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 216 VLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 216 ~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
.++.+.|+|||||||+.+.++.- .. ...+-+.++.-.+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl--~~-p~~G~i~~~g~~~ 62 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI--VK-PDRGEVRLNGADI 62 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS--SC-CSEEEEEETTEEC
T ss_pred EEEEEECCCCCCHHHHHHHHhCC--CC-CCceEEEECCEEC
Confidence 68899999999999999999864 11 2245677766443
No 214
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.41 E-value=0.0073 Score=59.11 Aligned_cols=41 Identities=24% Similarity=0.314 Sum_probs=29.9
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
....++.+.|+|||||||+.+.++.- .. ...+.+.++...+
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl--~~-p~~G~i~~~g~~~ 70 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFL--EK-PSEGAIIVNGQNI 70 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTS--SC-CSEEEEEETTEEC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC--CC-CCCcEEEECCEEc
Confidence 45668999999999999999999764 11 2235677766444
No 215
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.39 E-value=0.0093 Score=57.27 Aligned_cols=35 Identities=20% Similarity=0.207 Sum_probs=27.3
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEec
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIE 252 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvIn 252 (513)
..|.-+++.|+||+||||+++.++... +..++.++
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~-----~~~~~~i~ 96 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEES-----NFPFIKIC 96 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHH-----TCSEEEEE
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHh-----CCCEEEEe
Confidence 356788999999999999999998861 34555554
No 216
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.39 E-value=0.01 Score=58.42 Aligned_cols=41 Identities=22% Similarity=0.348 Sum_probs=30.4
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
....++.|.|+|||||||+.+.|+.- .. ...+-+.++.-.+
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl--~~-p~~G~I~~~g~~i 83 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNL--YQ-PTGGKVLLDGEPL 83 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTS--SC-CSEEEEEETTEEG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC--CC-CCCCEEEECCEEc
Confidence 45568999999999999999999764 21 2245677776554
No 217
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.39 E-value=0.013 Score=52.34 Aligned_cols=21 Identities=24% Similarity=0.526 Sum_probs=19.4
Q ss_pred EEEecCCCCchHHHHHHHhcC
Q 044777 218 LFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 218 ILmaG~pGAGKSTla~~Ll~~ 238 (513)
+++.|++|+||||+++.++..
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999999864
No 218
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.38 E-value=0.0065 Score=58.15 Aligned_cols=26 Identities=38% Similarity=0.562 Sum_probs=22.4
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcC
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
....++.+.|+|||||||+.+.++..
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34568999999999999999999764
No 219
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.37 E-value=0.0065 Score=58.53 Aligned_cols=41 Identities=22% Similarity=0.286 Sum_probs=29.7
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
....++.+.|+|||||||+.+.|+.- .. ...+-+.++.-.+
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~-p~~G~i~~~g~~~ 70 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTLSAIAGL--VR-AQKGKIIFNGQDI 70 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTS--SC-CSEEEEEETTEEC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC--CC-CCCceEEECCEEC
Confidence 35568999999999999999999864 21 2245677766444
No 220
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.35 E-value=0.0078 Score=59.22 Aligned_cols=41 Identities=22% Similarity=0.247 Sum_probs=29.9
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
....++.+.|+|||||||+.+.|+.- .. ...+-+.++.-.+
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl--~~-p~~G~I~~~g~~i 88 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLL--ED-FDEGEIIIDGINL 88 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTS--SC-CSEEEEEETTEES
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcC--CC-CCCcEEEECCEEC
Confidence 45678999999999999999999764 11 2235677766444
No 221
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.34 E-value=0.008 Score=58.56 Aligned_cols=40 Identities=15% Similarity=0.173 Sum_probs=28.3
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEAD 254 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaD 254 (513)
...+++++|+|||||||++..++... -...+..+.+++.+
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~-~~~~G~~v~~~~~e 73 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQW-GTAMGKKVGLAMLE 73 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHH-HHTSCCCEEEEESS
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH-HHHcCCeEEEEeCc
Confidence 45699999999999999999987641 11112356666654
No 222
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.33 E-value=0.0077 Score=58.61 Aligned_cols=41 Identities=24% Similarity=0.241 Sum_probs=29.9
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
....++.+.|+|||||||+.+.++.- .. ...+-+.++.-.+
T Consensus 31 ~~Ge~~~liG~nGsGKSTLlk~l~Gl--~~-p~~G~i~~~g~~~ 71 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLINVITGF--LK-ADEGRVYFENKDI 71 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTS--SC-CSEEEEEETTEEC
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCC--CC-CCCcEEEECCEEC
Confidence 35568999999999999999999764 11 2245677776544
No 223
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.31 E-value=0.0095 Score=61.43 Aligned_cols=41 Identities=22% Similarity=0.228 Sum_probs=32.1
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
...+++|.|+||+||||++..++.. ....+..+++|+++..
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~--~~~~gg~VlyId~E~s 100 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAE--AQKMGGVAAFIDAEHA 100 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEecccc
Confidence 4579999999999999999999865 2223456788888764
No 224
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.31 E-value=0.0082 Score=58.77 Aligned_cols=41 Identities=22% Similarity=0.208 Sum_probs=29.7
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
....++.+.|+|||||||+.+.|+.- .. ...+-+.++.-.+
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl--~~-p~~G~I~~~g~~~ 79 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIISTL--IK-PSSGIVTVFGKNV 79 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTS--SC-CSEEEEEETTEET
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcC--CC-CCceEEEECCEEC
Confidence 45668999999999999999999764 21 2235567765444
No 225
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.31 E-value=0.0086 Score=58.74 Aligned_cols=43 Identities=19% Similarity=0.258 Sum_probs=29.9
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
....++.+.|+|||||||+.+.|+.-.... ...+-+.++...+
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~-p~~G~I~~~g~~i 86 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGREDYE-VTGGTVEFKGKDL 86 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTCTTCE-EEEEEEEETTEEG
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEEC
Confidence 455689999999999999999998741000 1135567776544
No 226
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.29 E-value=0.0073 Score=57.27 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=20.1
Q ss_pred cEEEEEecCCCCchHHHHHHHhc
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILK 237 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~ 237 (513)
..++.+.|+|||||||+.+.++.
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 34788899999999999999875
No 227
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=95.28 E-value=0.013 Score=57.11 Aligned_cols=37 Identities=30% Similarity=0.239 Sum_probs=27.9
Q ss_pred cEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
+.-+++.|++|+||||+++.+.... +..++.+++..+
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~-----~~~~~~~~~~~~ 74 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHEL-----GVNLRVTSGPAI 74 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHH-----TCCEEEECTTTC
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHh-----CCCEEEEecccc
Confidence 3457889999999999999998751 245566676655
No 228
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.28 E-value=0.0072 Score=59.79 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=22.0
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcC
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
.|..+++.|++|+||||+++.+++.
T Consensus 37 ~~~~~ll~G~~G~GKT~la~~la~~ 61 (373)
T 1jr3_A 37 IHHAYLFSGTRGVGKTSIARLLAKG 61 (373)
T ss_dssp CCSEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3558899999999999999999875
No 229
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.26 E-value=0.0082 Score=59.50 Aligned_cols=41 Identities=17% Similarity=0.325 Sum_probs=30.2
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
....++.+.|+|||||||+.+.|+.- .. ...+-+.++...+
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl--~~-p~~G~I~~~G~~i 72 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQNFNGI--LK-PSSGRILFDNKPI 72 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHTTS--SC-CSEEEEEETTEEC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcC--CC-CCCeEEEECCEEC
Confidence 34568899999999999999999764 21 2245677776555
No 230
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.26 E-value=0.0088 Score=58.58 Aligned_cols=41 Identities=22% Similarity=0.325 Sum_probs=29.7
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
....++.+.|+|||||||+.+.++.- .. ...+-+.++.-.+
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl--~~-p~~G~I~~~g~~~ 71 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAGL--IE-PTSGDVLYDGERK 71 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTS--SC-CSEEEEEETTEEC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCC--CC-CCCcEEEECCEEC
Confidence 45568999999999999999999764 21 2245677766443
No 231
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.25 E-value=0.0089 Score=58.43 Aligned_cols=40 Identities=25% Similarity=0.289 Sum_probs=30.7
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
....++.+.|+|||||||+.+.|+.- .. . .+.+.++.-.+
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~-~-~G~I~i~g~~i 83 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRF--YD-A-EGDIKIGGKNV 83 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTS--SC-C-EEEEEETTEEG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcc--CC-C-CeEEEECCEEh
Confidence 45678999999999999999999875 32 2 46677776554
No 232
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.22 E-value=0.0073 Score=57.67 Aligned_cols=40 Identities=20% Similarity=0.254 Sum_probs=29.0
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
...++.+.|+|||||||+.+.++.- .. ...+.+.++...+
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl--~~-p~~G~I~~~g~~~ 73 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTY--LK-PLKGEIIYNGVPI 73 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTS--SC-CSEEEEEETTEEG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC--CC-CCCeEEEECCEEh
Confidence 4557889999999999999999764 21 2245677766443
No 233
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.22 E-value=0.0092 Score=57.83 Aligned_cols=43 Identities=21% Similarity=0.307 Sum_probs=29.8
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
....++.+.|+|||||||+.+.|+.-... ....+-+.++...+
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~-~p~~G~I~~~g~~~ 69 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGKILAGDPEY-TVERGEILLDGENI 69 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTCTTC-EEEEEEEEETTEEC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCCceEEEECCEEC
Confidence 34568999999999999999999873101 11235677776554
No 234
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.21 E-value=0.0078 Score=59.47 Aligned_cols=51 Identities=6% Similarity=-0.153 Sum_probs=32.8
Q ss_pred cChHHHHHHHHHHHHhcCCcCc-hhHHHHHHHHHHHHHHHhhcccceEEEEe
Q 044777 376 CDAYLAVVRGIRRAIMCRRAVR-VKSQLKSHKRFANAFLTYCQLVDSARLYS 426 (513)
Q Consensus 376 ~dpelAv~Rv~~Rv~~gGh~VP-~~~il~r~~rf~~nf~~~~~lvD~a~lyD 426 (513)
.+++....+...+....|-.++ .+.+..-......++..++.+.+.+.+|.
T Consensus 193 ~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~G~~r~a~~~l~~~~~~~ 244 (354)
T 1sxj_E 193 PSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESMALNN 244 (354)
T ss_dssp CCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTTCHHHHHHHHTHHHHTT
T ss_pred cCHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 4566666666666666677777 66665555555566777777777665553
No 235
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.19 E-value=0.0061 Score=59.82 Aligned_cols=53 Identities=21% Similarity=0.367 Sum_probs=35.3
Q ss_pred HHHHhHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCCCCcccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcC
Q 044777 161 QATREQRFERVTKNLKVARVFTTLVEEMKAMGLAPNDDSQCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 161 ~a~r~~rf~r~~~~~~v~r~~~~~ve~~~~~~~~~~~~~~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
+..|-..|+.+.....+.+.+...++ ....|. +++.|+||+||||+++.++..
T Consensus 29 ~k~~p~~~~~i~g~~~~~~~l~~~l~------------------------~~~~~~-~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 29 EKYRPKNLDEVTAQDHAVTVLKKTLK------------------------SANLPH-MLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp HHTCCSSTTTCCSCCTTHHHHHHHTT------------------------CTTCCC-EEEECSTTSSHHHHHHHHHHH
T ss_pred HhcCCCCHHHhhCCHHHHHHHHHHHh------------------------cCCCCE-EEEECCCCCCHHHHHHHHHHH
Confidence 34444566666666666555555441 111233 789999999999999999875
No 236
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.14 E-value=0.0096 Score=57.76 Aligned_cols=40 Identities=25% Similarity=0.346 Sum_probs=29.7
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
...++.+.|+|||||||+.+.|+.- .. ...+-+.++.-.+
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~-p~~G~I~i~g~~~ 73 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRF--YI-PENGQVLIDGHDL 73 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS--SC-CSEEEEEETTEET
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC--CC-CCCcEEEECCEEh
Confidence 4568999999999999999999764 21 2245677776544
No 237
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.13 E-value=0.0096 Score=58.04 Aligned_cols=39 Identities=23% Similarity=0.334 Sum_probs=29.6
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
...++.+.|+|||||||+.+.++.- .. .. +-+.++...+
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl--~~-p~-G~i~~~g~~~ 63 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGM--TS-GK-GSIQFAGQPL 63 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS--SC-CE-EEEEETTEEG
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC--CC-CC-eEEEECCEEC
Confidence 4568899999999999999999874 22 23 6677776544
No 238
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.12 E-value=0.011 Score=58.84 Aligned_cols=51 Identities=16% Similarity=0.312 Sum_probs=35.9
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHhcCCCCCCcccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcC
Q 044777 168 FERVTKNLKVARVFTTLVEEMKAMGLAPNDDSQCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 168 f~r~~~~~~v~r~~~~~ve~~~~~~~~~~~~~~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
|+.++....+++.+..+++-++. ....|..+++.|+||+||||+++.++..
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~--------------------~~~~~~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIRE--------------------GKIAGRAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHT--------------------TCCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHc--------------------CCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 66677667777766666532211 1123468899999999999999999876
No 239
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=95.11 E-value=0.013 Score=61.40 Aligned_cols=67 Identities=15% Similarity=0.163 Sum_probs=43.1
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHhcCCCCCCcccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcCcccccCCC
Q 044777 167 RFERVTKNLKVARVFTTLVEEMKAMGLAPNDDSQCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAG 246 (513)
Q Consensus 167 rf~r~~~~~~v~r~~~~~ve~~~~~~~~~~~~~~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~ 246 (513)
.|+.+.....+++.+..+++-++ .+ ...|.-+++.||||+||||+++.++... +...
T Consensus 35 ~~~~iiG~~~~~~~l~~~~~~~~-~~-------------------~~~~~~iLl~GppGtGKT~la~ala~~l---~~~~ 91 (456)
T 2c9o_A 35 AASGLVGQENAREACGVIVELIK-SK-------------------KMAGRAVLLAGPPGTGKTALALAIAQEL---GSKV 91 (456)
T ss_dssp EETTEESCHHHHHHHHHHHHHHH-TT-------------------CCTTCEEEEECCTTSSHHHHHHHHHHHH---CTTS
T ss_pred chhhccCHHHHHHHHHHHHHHHH-hC-------------------CCCCCeEEEECCCcCCHHHHHHHHHHHh---CCCc
Confidence 35666666677777766663221 11 1134568899999999999999999862 1114
Q ss_pred CeEEeccccc
Q 044777 247 NAVVIEADAF 256 (513)
Q Consensus 247 ~aVvInaDef 256 (513)
.++.+++-++
T Consensus 92 ~~~~~~~~~~ 101 (456)
T 2c9o_A 92 PFCPMVGSEV 101 (456)
T ss_dssp CEEEEEGGGG
T ss_pred eEEEEeHHHH
Confidence 5566666554
No 240
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.10 E-value=0.015 Score=61.07 Aligned_cols=40 Identities=25% Similarity=0.376 Sum_probs=28.5
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
...++++.|+|||||||+.+.++.. .... .+-+++..|.+
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~--l~~~-~g~I~~~ed~i 205 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQE--LNSS-ERNILTVEDPI 205 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHH--HCCT-TSCEEEEESSC
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhh--cCCC-CCEEEEecccc
Confidence 3468999999999999999999764 2212 34455555655
No 241
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.08 E-value=0.009 Score=55.81 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=19.6
Q ss_pred EEEEecCCCCchHHHHHHHhcC
Q 044777 217 LLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~ 238 (513)
.+.+.|+|||||||+.+.++..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5788999999999999999874
No 242
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.07 E-value=0.021 Score=56.93 Aligned_cols=72 Identities=10% Similarity=0.140 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHhc----CCCCCCcccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEec
Q 044777 177 VARVFTTLVEEMKAMG----LAPNDDSQCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIE 252 (513)
Q Consensus 177 v~r~~~~~ve~~~~~~----~~~~~~~~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvIn 252 (513)
+..++.+.++++...+ .-+...+...+++.-. ....+++++|+||+||||++..++.. ....+.++++++
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~lgGl----~~G~l~li~G~pG~GKTtl~l~ia~~--~a~~g~~vl~~s 103 (315)
T 3bh0_A 30 IDEALVTVYEEIESADGNITGVPSGFTELDRMTYGY----KRRNFVLIAARPSMGKTAFALKQAKN--MSDNDDVVNLHS 103 (315)
T ss_dssp CHHHHHHHHHHHHTCSSSCCSBCCSCHHHHHHHSSB----CTTCEEEEECCTTSSHHHHHHHHHHH--HHTTTCEEEEEE
T ss_pred HHHHHHHHHHHHHhccCCCCCccCChHHHHhhcCCC----CCCcEEEEEeCCCCCHHHHHHHHHHH--HHHcCCeEEEEE
Confidence 4555566666665431 1122444555555322 34569999999999999999998764 212234566776
Q ss_pred cc
Q 044777 253 AD 254 (513)
Q Consensus 253 aD 254 (513)
..
T Consensus 104 lE 105 (315)
T 3bh0_A 104 LE 105 (315)
T ss_dssp SS
T ss_pred CC
Confidence 55
No 243
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.06 E-value=0.01 Score=54.98 Aligned_cols=24 Identities=29% Similarity=0.319 Sum_probs=20.1
Q ss_pred cEEEEEecCCCCchHHHHHHHhcC
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
..++++.|+|||||||++..++..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~ 26 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEI 26 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999998766653
No 244
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.06 E-value=0.0098 Score=60.05 Aligned_cols=42 Identities=29% Similarity=0.218 Sum_probs=30.7
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
.++..+.+.|+|||||||+++.|+.. ....+..+.+++.|-.
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~--~~~~~~~v~v~~~d~~ 95 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGML--LIREGLKVAVIAVDPS 95 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHH--HHHTTCCEEEEEECCC
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHH--HHhcCCeEEEEeecCC
Confidence 35677888999999999999999754 2223456667777764
No 245
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=95.06 E-value=0.0094 Score=58.63 Aligned_cols=22 Identities=32% Similarity=0.552 Sum_probs=19.3
Q ss_pred EEEEecCCCCchHHHHHHHhcC
Q 044777 217 LLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~ 238 (513)
-+.+.|+|||||||+.+.|...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4678999999999999999763
No 246
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.06 E-value=0.01 Score=60.07 Aligned_cols=25 Identities=24% Similarity=0.290 Sum_probs=22.3
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILK 237 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~ 237 (513)
....++.+.|+|||||||+.+.|..
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999975
No 247
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.05 E-value=0.05 Score=54.67 Aligned_cols=38 Identities=13% Similarity=0.210 Sum_probs=28.5
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
.|.-+++.||||+||||+++.++... +..++.+++-.+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~-----~~~~~~~~~~~l 87 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL-----DVPFTMADATTL 87 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT-----TCCEEEEEHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc-----CCCEEEechHHh
Confidence 34557889999999999999999861 345666665544
No 248
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.05 E-value=0.018 Score=54.87 Aligned_cols=38 Identities=16% Similarity=0.245 Sum_probs=28.8
Q ss_pred EEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 217 LLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
-+++.|+||+|||++++.+.... ...+..++.|++..+
T Consensus 31 ~vll~G~~GtGKt~la~~i~~~~--~~~~~~~~~v~~~~~ 68 (265)
T 2bjv_A 31 PVLIIGERGTGKELIASRLHYLS--SRWQGPFISLNCAAL 68 (265)
T ss_dssp CEEEECCTTSCHHHHHHHHHHTS--TTTTSCEEEEEGGGS
T ss_pred CEEEECCCCCcHHHHHHHHHHhc--CccCCCeEEEecCCC
Confidence 46789999999999999998762 122345778887766
No 249
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.04 E-value=0.01 Score=57.80 Aligned_cols=26 Identities=35% Similarity=0.359 Sum_probs=22.3
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcC
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
....++.+.|+|||||||+.+.++.-
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHTTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35568899999999999999999764
No 250
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.04 E-value=0.01 Score=58.74 Aligned_cols=41 Identities=22% Similarity=0.094 Sum_probs=29.5
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
....++.+.|+|||||||+.+.|+.- .+ ...+.+.++.-.+
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl--~~-p~~G~I~~~g~~~ 85 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLNILNAY--EP-ATSGTVNLFGKMP 85 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTS--SC-CSEEEEEETTBCC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCC--CC-CCCeEEEECCEEc
Confidence 34568899999999999999999864 21 2235677766444
No 251
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.01 E-value=0.015 Score=54.58 Aligned_cols=33 Identities=12% Similarity=0.047 Sum_probs=25.9
Q ss_pred CcCchhHHHHHHHHHHHHHHHh-hcccceEEEEe
Q 044777 394 RAVRVKSQLKSHKRFANAFLTY-CQLVDSARLYS 426 (513)
Q Consensus 394 h~VP~~~il~r~~rf~~nf~~~-~~lvD~a~lyD 426 (513)
--||.+..-++|+.....+.+. ...+|++++.-
T Consensus 139 GiVP~~~~~R~frD~~G~lnq~lA~~ad~V~lvv 172 (180)
T 1c9k_A 139 GIVPENRLARHFRDIAGRVNQRLAAAADEVWLVV 172 (180)
T ss_dssp SCCCSSHHHHHHHHHHHHHHHHHHHHCSEEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEE
Confidence 3578888889999888887764 57899987753
No 252
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=94.99 E-value=0.01 Score=57.24 Aligned_cols=51 Identities=24% Similarity=0.423 Sum_probs=35.6
Q ss_pred HHhHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCCCCcccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcC
Q 044777 163 TREQRFERVTKNLKVARVFTTLVEEMKAMGLAPNDDSQCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 163 ~r~~rf~r~~~~~~v~r~~~~~ve~~~~~~~~~~~~~~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
.|-..|+.+.....+.+.+...++. ...|. +++.|++|+||||+++.++..
T Consensus 19 ~~p~~~~~~~g~~~~~~~l~~~l~~------------------------~~~~~-~ll~G~~G~GKT~la~~l~~~ 69 (327)
T 1iqp_A 19 YRPQRLDDIVGQEHIVKRLKHYVKT------------------------GSMPH-LLFAGPPGVGKTTAALALARE 69 (327)
T ss_dssp TCCCSTTTCCSCHHHHHHHHHHHHH------------------------TCCCE-EEEESCTTSSHHHHHHHHHHH
T ss_pred cCCCCHHHhhCCHHHHHHHHHHHHc------------------------CCCCe-EEEECcCCCCHHHHHHHHHHH
Confidence 3444577777666666666665521 12334 899999999999999999875
No 253
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.95 E-value=0.011 Score=54.92 Aligned_cols=55 Identities=15% Similarity=0.186 Sum_probs=34.5
Q ss_pred CCcccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccc
Q 044777 197 DDSQCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADA 255 (513)
Q Consensus 197 ~~~~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDe 255 (513)
+.+...+++.=- -....+++++|+||+||||++-+++.+. ....+..+++++.+.
T Consensus 15 Gi~~LD~~l~GG---l~~G~l~~i~G~pG~GKT~l~l~~~~~~-~~~~~~~v~~~s~E~ 69 (251)
T 2zts_A 15 GIPGFDELIEGG---FPEGTTVLLTGGTGTGKTTFAAQFIYKG-AEEYGEPGVFVTLEE 69 (251)
T ss_dssp SCTTTGGGTTTS---EETTCEEEEECCTTSSHHHHHHHHHHHH-HHHHCCCEEEEESSS
T ss_pred CcHHHHHhhcCC---CCCCeEEEEEeCCCCCHHHHHHHHHHHH-HHhcCCCceeecccC
Confidence 444555555311 1245699999999999999999876531 112234566666554
No 254
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.94 E-value=0.018 Score=57.05 Aligned_cols=38 Identities=18% Similarity=0.284 Sum_probs=27.5
Q ss_pred EEEEecCCCCchHHHHHHHhcCcccccC-CCCeEEeccccc
Q 044777 217 LLFMGGGMGAGKSTVLKDILKEPFWAGA-AGNAVVIEADAF 256 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~~f~~~~-~~~aVvInaDef 256 (513)
.+++.|+||+||||+++.+... .... +..++.+++...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~i~~~~~ 84 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL--YKDKTTARFVYINGFIY 84 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH--HTTSCCCEEEEEETTTC
T ss_pred eEEEECCCCCCHHHHHHHHHHH--HhhhcCeeEEEEeCccC
Confidence 7889999999999999999875 2111 235567775443
No 255
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.93 E-value=0.014 Score=59.87 Aligned_cols=24 Identities=38% Similarity=0.533 Sum_probs=21.1
Q ss_pred cEEEEEecCCCCchHHHHHHHhcC
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
.-++++.|||||||||+.+.++..
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 348999999999999999998764
No 256
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.92 E-value=0.014 Score=60.02 Aligned_cols=25 Identities=28% Similarity=0.485 Sum_probs=22.3
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcC
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
...++++.|+|||||||+.+.++..
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4578999999999999999999874
No 257
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.91 E-value=0.014 Score=54.02 Aligned_cols=24 Identities=33% Similarity=0.473 Sum_probs=20.7
Q ss_pred cEEEEEecCCCCchHHHHHHHhcC
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
..++.++|++||||||+++.|+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 346788999999999999999875
No 258
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=94.90 E-value=0.015 Score=54.48 Aligned_cols=24 Identities=33% Similarity=0.459 Sum_probs=21.2
Q ss_pred CcEEEEEecCCCCchHHHHHHHhc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILK 237 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~ 237 (513)
.|-+.+|.|+|||||||+..++.-
T Consensus 22 ~~~~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 22 KEGINLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHH
Confidence 467999999999999999998854
No 259
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=94.88 E-value=0.013 Score=59.92 Aligned_cols=40 Identities=25% Similarity=0.274 Sum_probs=31.0
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADA 255 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDe 255 (513)
...++++.|+|||||||++..++.. ....+..+++|+.+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~--~~~~g~~vlyi~~E~ 99 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVAN--AQAAGGIAAFIDAEH 99 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC
Confidence 4569999999999999999998754 222346788888775
No 260
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=94.86 E-value=0.013 Score=59.09 Aligned_cols=42 Identities=24% Similarity=0.378 Sum_probs=31.4
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFK 257 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR 257 (513)
....++.+.|+|||||||+++.|+.- +. ...+-+.|+...++
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl--~~-p~~G~I~i~G~~i~ 119 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRF--YD-ISSGCIRIDGQDIS 119 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTS--SC-CSEEEEEETTEETT
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcC--CC-CCCcEEEECCEEcc
Confidence 34568999999999999999998764 32 23466788776654
No 261
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.85 E-value=0.013 Score=56.80 Aligned_cols=24 Identities=21% Similarity=0.146 Sum_probs=21.5
Q ss_pred CcEEEEEecCCCCchHHHHHHHhc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILK 237 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~ 237 (513)
+..++++.|+|||||||++..++.
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 556999999999999999999875
No 262
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=94.84 E-value=0.017 Score=58.73 Aligned_cols=40 Identities=25% Similarity=0.240 Sum_probs=27.6
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADA 255 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDe 255 (513)
....+.+.|+|||||||+.+.|... ....+..+.++..|-
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~--~~~~~~~v~V~~~dp 112 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKM--LTERGHKLSVLAVDP 112 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH--HHHTTCCEEEEECCC
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH--hhhcCCeEEEEeecC
Confidence 3568899999999999999999863 111234444555443
No 263
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=94.84 E-value=0.0095 Score=52.27 Aligned_cols=33 Identities=21% Similarity=0.210 Sum_probs=25.2
Q ss_pred EEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 218 LFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 218 ILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
+++.|+||+|||++++.+.... ..++.+++..+
T Consensus 30 vll~G~~GtGKt~lA~~i~~~~------~~~~~~~~~~~ 62 (143)
T 3co5_A 30 VFLTGEAGSPFETVARYFHKNG------TPWVSPARVEY 62 (143)
T ss_dssp EEEEEETTCCHHHHHGGGCCTT------SCEECCSSTTH
T ss_pred EEEECCCCccHHHHHHHHHHhC------CCeEEechhhC
Confidence 6789999999999999998761 14556666554
No 264
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.81 E-value=0.017 Score=58.46 Aligned_cols=34 Identities=29% Similarity=0.463 Sum_probs=26.3
Q ss_pred EEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEec
Q 044777 216 VLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIE 252 (513)
Q Consensus 216 ~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvIn 252 (513)
.++.+.|+|||||||+.+.|+.. +.. ..+.+.|+
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~--~~~-~~g~i~i~ 205 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEF--IPK-EERIISIE 205 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGG--SCT-TSCEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCC--CcC-CCcEEEEC
Confidence 47899999999999999999875 332 34566664
No 265
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=94.79 E-value=0.017 Score=55.71 Aligned_cols=37 Identities=27% Similarity=0.211 Sum_probs=28.2
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEec
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIE 252 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvIn 252 (513)
+..++++.|+||+||||++..++.. ..+.+..+.++.
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r--~~~~g~kVli~~ 47 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHR--LEYADVKYLVFK 47 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHH--HHHTTCCEEEEE
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEE
Confidence 4679999999999999998888765 333445666663
No 266
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.73 E-value=0.018 Score=62.00 Aligned_cols=88 Identities=20% Similarity=0.173 Sum_probs=48.6
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEe-cccccccchhhhhhhhccccCchhhHHHHHhHhHHHHHHHH
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVI-EADAFKESDVIYRALSSRSHVDMLQTAELVHQSSTDAASSL 292 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvI-naDefR~~~p~y~~l~~~G~~Dp~qaae~v~~eAtrlA~~l 292 (513)
.+..+++.|+|||||||+.+.++.. .+ ...+.+.| +++++...++.+-.+..+... . ....-...+
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~--i~-~~~giitied~~E~~~~~~~~v~~~~r~~~--------~--~~~~~~~~~ 325 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMF--IP-PDAKVVSIEDTREIKLYHENWIAEVTRTGM--------G--EGEIDMYDL 325 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGG--SC-TTCCEEEEESSCCCCCCCSSEEEEECBCCS--------S--SCCBCHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh--CC-CCCCEEEEcCcccccCCCCCeEEEEeeccc--------c--cCCcCHHHH
Confidence 3456899999999999999999874 32 23455555 555553211110000000000 0 000001234
Q ss_pred HHHHHHCCCcEEEECcCCChHH
Q 044777 293 LVTALNEGRDVIMDGTLSWVPF 314 (513)
Q Consensus 293 i~~aL~~GrsVIlDtTlS~~~~ 314 (513)
+..++.+.=++|+=+-++..+.
T Consensus 326 l~~~LR~~PD~iivgEir~~E~ 347 (511)
T 2oap_1 326 LRAALRQRPDYIIVGEVRGREA 347 (511)
T ss_dssp HHTTGGGCCSEEEESCCCSTHH
T ss_pred HHHhhccCCCeEEeCCcCHHHH
Confidence 5567777778888888887664
No 267
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.66 E-value=0.02 Score=59.14 Aligned_cols=41 Identities=20% Similarity=0.358 Sum_probs=30.0
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
....++.+.|||||||||+.+.|+.-. ....+-+.++...+
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr~iaGl~---~p~~G~I~i~G~~i 68 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLRCLAGFE---QPDSGEISLSGKTI 68 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTSS---CCSEEEEEETTEEE
T ss_pred cCCCEEEEECCCCchHHHHHHHHhcCC---CCCCcEEEECCEEC
Confidence 345688999999999999999998741 12245677766554
No 268
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.65 E-value=0.015 Score=57.15 Aligned_cols=38 Identities=21% Similarity=0.260 Sum_probs=28.7
Q ss_pred cEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
..++.+.|+|||||||+.+.++.- . ...+-+.++...+
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl--~--p~~G~I~~~g~~~ 67 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGL--L--PYSGNIFINGMEV 67 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTS--S--CCEEEEEETTEEG
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC--C--CCCcEEEECCEEC
Confidence 668899999999999999999875 2 2245677766443
No 269
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.60 E-value=0.016 Score=57.84 Aligned_cols=26 Identities=38% Similarity=0.562 Sum_probs=22.6
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcC
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
....++.+.|+|||||||+.+.|+.-
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 45668999999999999999999764
No 270
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.57 E-value=0.058 Score=60.85 Aligned_cols=74 Identities=16% Similarity=0.247 Sum_probs=46.4
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHhcCCCCCCcccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcCcccccCC
Q 044777 166 QRFERVTKNLKVARVFTTLVEEMKAMGLAPNDDSQCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAA 245 (513)
Q Consensus 166 ~rf~r~~~~~~v~r~~~~~ve~~~~~~~~~~~~~~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~ 245 (513)
..|+.+....++++.+.+.++-.... .++.... .-..|.-+++.|+||+||||+++.++.. .+
T Consensus 201 v~~~di~G~~~~~~~l~e~i~~~l~~----------~~~~~~l--~i~~~~~vLL~Gp~GtGKTtLarala~~-----l~ 263 (806)
T 1ypw_A 201 VGYDDVGGCRKQLAQIKEMVELPLRH----------PALFKAI--GVKPPRGILLYGPPGTGKTLIARAVANE-----TG 263 (806)
T ss_dssp CCGGGCCSCSGGGGHHHHHHHHHHHC----------GGGGTSS--CCCCCCEEEECSCTTSSHHHHHHHHHHT-----TT
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhhC----------HHHHHhc--CCCCCCeEEEECcCCCCHHHHHHHHHHH-----cC
Confidence 46677777666777777666421111 1111111 1235667899999999999999999886 13
Q ss_pred CCeEEeccccc
Q 044777 246 GNAVVIEADAF 256 (513)
Q Consensus 246 ~~aVvInaDef 256 (513)
...+.|++.++
T Consensus 264 ~~~i~v~~~~l 274 (806)
T 1ypw_A 264 AFFFLINGPEI 274 (806)
T ss_dssp CEEEEEEHHHH
T ss_pred CcEEEEEchHh
Confidence 45566776555
No 271
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.55 E-value=0.027 Score=54.28 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=20.9
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcC
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
.|. +++.|++|+||||+++.+++.
T Consensus 42 ~~~-~ll~G~~G~GKt~la~~l~~~ 65 (323)
T 1sxj_B 42 MPH-MIISGMPGIGKTTSVHCLAHE 65 (323)
T ss_dssp CCC-EEEECSTTSSHHHHHHHHHHH
T ss_pred CCe-EEEECcCCCCHHHHHHHHHHH
Confidence 345 899999999999999999875
No 272
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=94.54 E-value=0.019 Score=55.17 Aligned_cols=24 Identities=25% Similarity=0.513 Sum_probs=20.8
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcC
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
.|. +++.|++|+||||+++.+++.
T Consensus 38 ~~~-~ll~G~~G~GKt~la~~l~~~ 61 (319)
T 2chq_A 38 IPH-LLFSGPPGTGKTATAIALARD 61 (319)
T ss_dssp CCC-EEEESSSSSSHHHHHHHHHHH
T ss_pred CCe-EEEECcCCcCHHHHHHHHHHH
Confidence 344 799999999999999999875
No 273
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=94.54 E-value=0.02 Score=57.57 Aligned_cols=23 Identities=35% Similarity=0.504 Sum_probs=20.7
Q ss_pred CcEEEEEecCCCCchHHHHHHHh
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDIL 236 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll 236 (513)
.|-+.+|.|+|||||||+..++.
T Consensus 22 ~~~~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 22 KEGINLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 57789999999999999999874
No 274
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.53 E-value=0.022 Score=53.88 Aligned_cols=24 Identities=17% Similarity=0.310 Sum_probs=21.8
Q ss_pred cEEEEEecCCCCchHHHHHHHhcC
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
-.-+++.|++|+||||++..|...
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 457899999999999999999886
No 275
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.52 E-value=0.024 Score=58.83 Aligned_cols=41 Identities=20% Similarity=0.254 Sum_probs=30.7
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
....++.+.|+|||||||+.+.+..- . ....+-+.++...+
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~GL--~-~p~~G~I~i~G~~i 92 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNLL--E-RPTEGSVLVDGQEL 92 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTS--S-CCSEEEEEETTEEC
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhcC--C-CCCceEEEECCEEC
Confidence 45568999999999999999999864 1 12245677777655
No 276
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=94.50 E-value=0.027 Score=49.81 Aligned_cols=25 Identities=24% Similarity=0.329 Sum_probs=22.1
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcC
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
++.-+++.|.+|+||||+.+.+...
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5567899999999999999999874
No 277
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.50 E-value=0.023 Score=57.37 Aligned_cols=37 Identities=16% Similarity=0.258 Sum_probs=28.2
Q ss_pred cEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
+.-+++.|+||+||||+++.++... +..++.+++..+
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l-----~~~~~~~~~~~~ 108 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHL-----DIPIAISDATSL 108 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT-----TCCEEEEEGGGC
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh-----CCCEEEecchhh
Confidence 3457889999999999999999861 345666666554
No 278
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=94.48 E-value=0.015 Score=52.72 Aligned_cols=27 Identities=22% Similarity=0.389 Sum_probs=22.8
Q ss_pred CCCcEEEEEecCCCCchHHHHHHHhcC
Q 044777 212 DRSPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 212 ~~~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
......+.+.|+|||||||+.+.+...
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 345678999999999999999998764
No 279
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.47 E-value=0.019 Score=58.94 Aligned_cols=40 Identities=15% Similarity=0.203 Sum_probs=31.1
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADA 255 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDe 255 (513)
+..+++++|+||+||||++..++.. ....+..+++|+.+.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~--~~~~g~~vlyid~E~ 101 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEH 101 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEESSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEeCCC
Confidence 4569999999999999999998764 222345788898854
No 280
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=94.44 E-value=0.025 Score=58.91 Aligned_cols=41 Identities=22% Similarity=0.251 Sum_probs=30.5
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
....++.+.|||||||||+.+.|+.- . ....+-+.++...+
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~iaGl--~-~p~~G~I~i~G~~~ 67 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIAGL--E-TITSGDLFIGEKRM 67 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTS--S-CCSEEEEEETTEEC
T ss_pred CCCCEEEEEcCCCchHHHHHHHHHcC--C-CCCCeEEEECCEEC
Confidence 35568999999999999999999864 1 12345677776555
No 281
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=94.43 E-value=0.04 Score=55.67 Aligned_cols=56 Identities=11% Similarity=0.140 Sum_probs=37.0
Q ss_pred CCcccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcCccc----ccCCCCeEEecccc
Q 044777 197 DDSQCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKEPFW----AGAAGNAVVIEADA 255 (513)
Q Consensus 197 ~~~~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~~f~----~~~~~~aVvInaDe 255 (513)
..+...+++.-. -....+++++|+||+||||++..++..... .+.+.++++|+.+.
T Consensus 107 G~~~LD~~LgGG---l~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 107 GSQEFDKLLGGG---IESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SCHHHHHHTTSS---BCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CChhHHHHhcCC---CCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 444455555421 235679999999999999999998764101 11245678888765
No 282
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.41 E-value=0.019 Score=58.00 Aligned_cols=26 Identities=19% Similarity=0.163 Sum_probs=22.6
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcC
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
+...++.|.|+|||||||+++.|+.-
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhh
Confidence 35568999999999999999999874
No 283
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.40 E-value=0.026 Score=57.45 Aligned_cols=59 Identities=12% Similarity=0.221 Sum_probs=36.9
Q ss_pred CCCCcccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcCcccc-cC---CCCeEEeccccc
Q 044777 195 PNDDSQCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKEPFWA-GA---AGNAVVIEADAF 256 (513)
Q Consensus 195 ~~~~~~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~-~~---~~~aVvInaDef 256 (513)
+...+...+++.- .-....++.+.|+|||||||++..++...-.. .. ++.+++|+....
T Consensus 114 sTG~~~LD~lL~g---gi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~ 176 (349)
T 1pzn_A 114 STGSKSLDKLLGG---GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT 176 (349)
T ss_dssp CCSCHHHHHHHTS---SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC
T ss_pred cCCCHHHHHHhcC---CCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC
Confidence 3344455555531 12356799999999999999999997641001 01 134578877553
No 284
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=94.40 E-value=0.026 Score=58.14 Aligned_cols=41 Identities=15% Similarity=0.220 Sum_probs=29.7
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
....++.+.|||||||||+.+.|+.- . ....+-+.++...+
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl--~-~p~~G~I~i~g~~i 67 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLAGI--Y-KPTSGEIYFDDVLV 67 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHTS--S-CCSEEEEEETTEEC
T ss_pred cCCCEEEEEcCCCchHHHHHHHHHCC--C-CCCccEEEECCEEC
Confidence 35568899999999999999999864 1 12245567765444
No 285
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=94.37 E-value=0.042 Score=62.05 Aligned_cols=42 Identities=19% Similarity=0.328 Sum_probs=32.5
Q ss_pred EEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccccc
Q 044777 216 VLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKES 259 (513)
Q Consensus 216 ~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~~ 259 (513)
.-+++.|+||+|||++++.+....+ ..+.+++.||+.++...
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~--~~~~~~i~i~~~~~~~~ 630 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLF--DTEEAMIRIDMTEYMEK 630 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHH--SSGGGEEEECTTTCCSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc--CCCCcEEEEechhccch
Confidence 4789999999999999999987622 22356788888877543
No 286
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=94.37 E-value=0.027 Score=58.17 Aligned_cols=41 Identities=20% Similarity=0.322 Sum_probs=30.0
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
....++.+.|||||||||+.+.|+.- . ....+-+.++...+
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl--~-~p~~G~I~i~g~~i 67 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYTIAGI--Y-KPTSGKIYFDEKDV 67 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTS--S-CCSEEEEEETTEEC
T ss_pred CCCCEEEEECCCCchHHHHHHHHhcC--C-CCCceEEEECCEEC
Confidence 35568899999999999999999864 1 12245677766544
No 287
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=94.37 E-value=0.03 Score=59.79 Aligned_cols=75 Identities=16% Similarity=0.259 Sum_probs=46.2
Q ss_pred hHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCCCCcccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcCcccccC
Q 044777 165 EQRFERVTKNLKVARVFTTLVEEMKAMGLAPNDDSQCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGA 244 (513)
Q Consensus 165 ~~rf~r~~~~~~v~r~~~~~ve~~~~~~~~~~~~~~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~ 244 (513)
...|+.+.......+.+.++++-.... .+++... ....|.-+++.|+||+|||++++.++.. .
T Consensus 200 ~~~~~~i~G~~~~~~~l~~~i~~~l~~----------~~~~~~~--g~~~~~~vLL~GppGtGKT~lAraia~~-----~ 262 (489)
T 3hu3_A 200 EVGYDDIGGCRKQLAQIKEMVELPLRH----------PALFKAI--GVKPPRGILLYGPPGTGKTLIARAVANE-----T 262 (489)
T ss_dssp CCCGGGCCSCHHHHHHHHHHTHHHHHC----------HHHHHHH--TCCCCCEEEEECSTTSSHHHHHHHHHHH-----C
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhhC----------HHHHHhc--CCCCCCcEEEECcCCCCHHHHHHHHHHH-----h
Confidence 346666776666666666666321111 0111100 0124556889999999999999999886 2
Q ss_pred CCCeEEeccccc
Q 044777 245 AGNAVVIEADAF 256 (513)
Q Consensus 245 ~~~aVvInaDef 256 (513)
+..++.||+.++
T Consensus 263 ~~~fv~vn~~~l 274 (489)
T 3hu3_A 263 GAFFFLINGPEI 274 (489)
T ss_dssp SSEEEEEEHHHH
T ss_pred CCCEEEEEchHh
Confidence 356677787666
No 288
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=94.35 E-value=0.023 Score=58.08 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=19.4
Q ss_pred cEEEEEecCCCCchHHHHHHHh
Q 044777 215 PVLLFMGGGMGAGKSTVLKDIL 236 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll 236 (513)
+-+.+|.|+|||||||+...+.
T Consensus 23 ~g~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 23 SGITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 3478899999999999999875
No 289
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.31 E-value=0.027 Score=58.04 Aligned_cols=40 Identities=23% Similarity=0.197 Sum_probs=29.2
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
...++.+.|||||||||+.+.|+.- . ....+-+.++...+
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl--~-~p~~G~I~i~g~~i 79 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGL--E-RPTKGDVWIGGKRV 79 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTS--S-CCSEEEEEETTEEC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC--C-CCCccEEEECCEEC
Confidence 4568899999999999999999864 1 12245577766444
No 290
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.30 E-value=0.024 Score=51.38 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=21.9
Q ss_pred cEEEEEecCCCCchHHHHHHHhcCc
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKEP 239 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~~ 239 (513)
...+.+.|+|||||||+.+.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4578999999999999999998763
No 291
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.29 E-value=0.021 Score=51.69 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=21.4
Q ss_pred cEEEEEecCCCCchHHHHHHHhcCc
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKEP 239 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~~ 239 (513)
..-+.+.|+|||||||+.+.+....
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCC
Confidence 3467899999999999999998763
No 292
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.24 E-value=0.031 Score=48.59 Aligned_cols=28 Identities=25% Similarity=0.339 Sum_probs=23.1
Q ss_pred CCCcEEEEEecCCCCchHHHHHHHhcCc
Q 044777 212 DRSPVLLFMGGGMGAGKSTVLKDILKEP 239 (513)
Q Consensus 212 ~~~P~LILmaG~pGAGKSTla~~Ll~~~ 239 (513)
..++.-+++.|.+|+||||+.+.+....
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCc
Confidence 3455678889999999999999998763
No 293
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=94.19 E-value=0.032 Score=49.03 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=21.2
Q ss_pred cEEEEEecCCCCchHHHHHHHhcC
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
+.-+++.|+||+||||+.+.+...
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCC
Confidence 456889999999999999999875
No 294
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=94.16 E-value=0.037 Score=52.24 Aligned_cols=44 Identities=14% Similarity=0.303 Sum_probs=28.2
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCc-ccc--cCC-CCeEEecccccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEP-FWA--GAA-GNAVVIEADAFK 257 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~-f~~--~~~-~~aVvInaDefR 257 (513)
.|-++++.|+||||||+++..+.... .|. ..+ ....+.+.|.+.
T Consensus 4 ~~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~ 51 (199)
T 2r2a_A 4 MAEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLK 51 (199)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBC
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCcc
Confidence 56689999999999999988764321 010 112 223356777664
No 295
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.15 E-value=0.024 Score=58.18 Aligned_cols=41 Identities=20% Similarity=0.238 Sum_probs=30.1
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
....++.+.|||||||||+.+.|+.- . ....+-+.++...+
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr~iaGl--~-~p~~G~I~~~g~~i 64 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLELIAGF--H-VPDSGRILLDGKDV 64 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHTS--S-CCSEEEEEETTEEC
T ss_pred cCCCEEEEECCCCccHHHHHHHHHcC--C-CCCCcEEEECCEEC
Confidence 35568899999999999999999864 1 12245677776544
No 296
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=94.14 E-value=0.032 Score=57.81 Aligned_cols=41 Identities=20% Similarity=0.225 Sum_probs=29.9
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
....++.+-|||||||||+.+.|+.- . ....+-+.++...+
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~iaGl--~-~p~~G~I~i~g~~i 75 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIAGL--E-EPTEGRIYFGDRDV 75 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTS--S-CCSEEEEEETTEEC
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcC--C-CCCceEEEECCEEC
Confidence 35568899999999999999999864 1 12245677766444
No 297
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.14 E-value=0.036 Score=50.78 Aligned_cols=39 Identities=15% Similarity=0.246 Sum_probs=26.7
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADA 255 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDe 255 (513)
++..+++.|.+||||||++..|+... . .......|+.|.
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~-~--~~~~~~~i~~d~ 67 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERI-G--NEVKIGAMLGDV 67 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHH-T--TTSCEEEEECSC
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh-c--cCCeEEEEecCC
Confidence 34567788999999999999998751 1 113344555554
No 298
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.13 E-value=0.021 Score=56.13 Aligned_cols=42 Identities=26% Similarity=0.350 Sum_probs=29.8
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccC---CCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGA---AGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~---~~~aVvInaDef 256 (513)
..+..+++.|++|+||||+++.++.. .... +..++.+++...
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~i~~~~~ 87 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSK--LHKKFLGKFKHVYINTRQI 87 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHH--HHHHTCSSCEEEEEEHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhcCCceEEEEECCCC
Confidence 35668899999999999999999874 1111 245667776543
No 299
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=94.11 E-value=0.028 Score=59.73 Aligned_cols=38 Identities=29% Similarity=0.463 Sum_probs=29.2
Q ss_pred cEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccc
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFK 257 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR 257 (513)
|.-+++.||||+||||+++.++.. .+.+.+.+++..+.
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~-----l~~~~~~v~~~~~~ 87 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKL-----ANAPFIKVEATKFT 87 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH-----TTCCEEEEEGGGGC
T ss_pred CceEEEEcCCCCCHHHHHHHHHHH-----cCCCceeecchhhc
Confidence 455889999999999999999986 23456666665553
No 300
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=94.10 E-value=0.036 Score=60.14 Aligned_cols=65 Identities=14% Similarity=0.162 Sum_probs=42.9
Q ss_pred HHhHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCCCCcccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcCcccc
Q 044777 163 TREQRFERVTKNLKVARVFTTLVEEMKAMGLAPNDDSQCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKEPFWA 242 (513)
Q Consensus 163 ~r~~rf~r~~~~~~v~r~~~~~ve~~~~~~~~~~~~~~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~ 242 (513)
.|.+.|+.+.....+.+.++..++ ....+++.|+||+||||+++.++.. +.
T Consensus 35 ~rp~~l~~i~G~~~~l~~l~~~i~---------------------------~g~~vll~Gp~GtGKTtlar~ia~~--l~ 85 (604)
T 3k1j_A 35 VPEKLIDQVIGQEHAVEVIKTAAN---------------------------QKRHVLLIGEPGTGKSMLGQAMAEL--LP 85 (604)
T ss_dssp CCSSHHHHCCSCHHHHHHHHHHHH---------------------------TTCCEEEECCTTSSHHHHHHHHHHT--SC
T ss_pred ccccccceEECchhhHhhcccccc---------------------------CCCEEEEEeCCCCCHHHHHHHHhcc--CC
Confidence 344567777777666666666662 1136789999999999999999886 33
Q ss_pred cCCCCeEEeccccc
Q 044777 243 GAAGNAVVIEADAF 256 (513)
Q Consensus 243 ~~~~~aVvInaDef 256 (513)
....+.+.+..+..
T Consensus 86 ~~~~~~~~~~~~~~ 99 (604)
T 3k1j_A 86 TETLEDILVFPNPE 99 (604)
T ss_dssp CSSCEEEEEECCTT
T ss_pred cccCCeEEEeCCcc
Confidence 22234455554444
No 301
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=94.09 E-value=0.039 Score=54.33 Aligned_cols=53 Identities=9% Similarity=0.074 Sum_probs=35.2
Q ss_pred HHHHHHhHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCCCCcccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcC
Q 044777 159 VMQATREQRFERVTKNLKVARVFTTLVEEMKAMGLAPNDDSQCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 159 v~~a~r~~rf~r~~~~~~v~r~~~~~ve~~~~~~~~~~~~~~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
.++.+|..-|..+.....+.+.+...+. . .. -+++.|+||+||||+++.++..
T Consensus 17 ~~~~~~~~~~~~i~g~~~~~~~l~~~l~-------------------~------~~--~vll~G~pGtGKT~la~~la~~ 69 (331)
T 2r44_A 17 KIKEVIDEVGKVVVGQKYMINRLLIGIC-------------------T------GG--HILLEGVPGLAKTLSVNTLAKT 69 (331)
T ss_dssp HHHHHHHHHTTTCCSCHHHHHHHHHHHH-------------------H------TC--CEEEESCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccceeCcHHHHHHHHHHHH-------------------c------CC--eEEEECCCCCcHHHHHHHHHHH
Confidence 3555666666666655555554444331 0 02 3688999999999999999875
No 302
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=94.07 E-value=0.032 Score=57.71 Aligned_cols=40 Identities=20% Similarity=0.236 Sum_probs=29.0
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
...++.+.|+|||||||+.+.|+.- . ....+-+.++...+
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl--~-~p~~G~I~i~g~~~ 67 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGL--E-EPSRGQIYIGDKLV 67 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTS--S-CCSEEEEEETTEEE
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcC--C-CCCccEEEECCEEC
Confidence 4568899999999999999999864 1 12245567765444
No 303
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.06 E-value=0.038 Score=51.89 Aligned_cols=37 Identities=22% Similarity=0.110 Sum_probs=28.4
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEec
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIE 252 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvIn 252 (513)
+..++++.|+|||||||.+-.++.. +...+..+.++.
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r--~~~~g~kV~v~k 43 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRR--AKIAKQKIQVFK 43 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEE
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHH--HHHCCCEEEEEE
Confidence 4579999999999999999888776 333455666664
No 304
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.06 E-value=0.029 Score=56.01 Aligned_cols=56 Identities=18% Similarity=0.266 Sum_probs=35.9
Q ss_pred CCcccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcCcc----cccCCCCeEEecccc
Q 044777 197 DDSQCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKEPF----WAGAAGNAVVIEADA 255 (513)
Q Consensus 197 ~~~~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~~f----~~~~~~~aVvInaDe 255 (513)
..+...+++.-.- ....+++++|+||+||||++..++.... |.+.+.++++|+.+.
T Consensus 92 G~~~LD~~L~GGl---~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 92 GSQALDGLLAGGI---ETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp SCHHHHHHTTTSE---ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CchhHHHhcCCCC---CCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 3444455553211 2456999999999999999999876410 111145678888775
No 305
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.94 E-value=0.032 Score=50.88 Aligned_cols=27 Identities=15% Similarity=0.316 Sum_probs=22.4
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEP 239 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~ 239 (513)
..+.-+++.|++|+||||++..+....
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344567889999999999999998863
No 306
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=93.93 E-value=0.023 Score=55.96 Aligned_cols=42 Identities=19% Similarity=0.283 Sum_probs=29.6
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccC------CCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGA------AGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~------~~~aVvInaDef 256 (513)
..|..+++.|+||+||||+++.+... .... +..++.+|+...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~ 89 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRR--LEARASSLGVLVKPIYVNARHR 89 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHH--HHHHHHHHTCCEEEEEEETTTS
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHH--HHHHHhccCCCeEEEEEECCcC
Confidence 35667899999999999999999875 1110 234566776554
No 307
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=93.90 E-value=0.046 Score=57.01 Aligned_cols=59 Identities=12% Similarity=0.187 Sum_probs=36.8
Q ss_pred CCCCCcccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcCcccc----cCCCCeEEecccc
Q 044777 194 APNDDSQCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKEPFWA----GAAGNAVVIEADA 255 (513)
Q Consensus 194 ~~~~~~~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~----~~~~~aVvInaDe 255 (513)
-+...+...+++.--- ....++.|.|+|||||||++..++-....+ +.+.+.++|+...
T Consensus 160 i~TG~~~LD~lLgGGI---~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 160 LTTGSKNLDTLLGGGV---ETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp ECCSCHHHHHHTTTSE---ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred cccCChhHHHHhcCCc---CCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 3445555566663222 244599999999999999999775221110 0234578888765
No 308
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=93.90 E-value=0.023 Score=58.31 Aligned_cols=41 Identities=17% Similarity=0.104 Sum_probs=29.2
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
....++.+.|||||||||+.+.|+.- . ....+-+.++...+
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr~iaGl--~-~p~~G~I~i~g~~i 69 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMRIIAGL--D-VPSTGELYFDDRLV 69 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHTS--S-CCSEEEEEETTEEE
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCC--C-CCCceEEEECCEEC
Confidence 34568899999999999999999864 1 12235566765443
No 309
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.84 E-value=0.03 Score=55.53 Aligned_cols=25 Identities=32% Similarity=0.303 Sum_probs=22.3
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcC
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
.|..+++.|++|+||||+++.++..
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 4668999999999999999999874
No 310
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=93.84 E-value=0.027 Score=56.23 Aligned_cols=40 Identities=25% Similarity=0.391 Sum_probs=29.2
Q ss_pred cEEEEEecCCCCchHHHHHHHhcCcccc-cCCCCeEEeccccc
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKEPFWA-GAAGNAVVIEADAF 256 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~~f~~-~~~~~aVvInaDef 256 (513)
+.-+++.|++|+|||+++..++.. .. ..+..++++++..+
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~--~~~~~g~~v~~~~~~~l 192 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHE--LSEKKGVSTTLLHFPSF 192 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH--HHHHSCCCEEEEEHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH--HHHhcCCcEEEEEHHHH
Confidence 356788999999999999999865 22 23456667777655
No 311
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=93.80 E-value=0.029 Score=56.77 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=21.1
Q ss_pred cEEEEEecCCCCchHHHHHHHhcC
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
...+.|.|+|||||||+++.|+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 467889999999999999999864
No 312
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.79 E-value=0.016 Score=53.38 Aligned_cols=39 Identities=18% Similarity=0.201 Sum_probs=24.2
Q ss_pred EEEEEecCCCCchHHHHHHHhcCcccccCC--CCeEEeccccc
Q 044777 216 VLLFMGGGMGAGKSTVLKDILKEPFWAGAA--GNAVVIEADAF 256 (513)
Q Consensus 216 ~LILmaG~pGAGKSTla~~Ll~~~f~~~~~--~~aVvInaDef 256 (513)
.++.+.|++||||||+++.|+.. +...+ .+.+.++...+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~--~~~~g~~~G~I~~dg~~i 43 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI--LRERGLRVAVVKRHAHGD 43 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH--HHHTTCCEEEEEC-----
T ss_pred eEEEEECCCCCCHHHHHHHHHHH--hhhcCCceEEEEEcCccc
Confidence 36778889999999999999864 33221 24556665553
No 313
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=93.77 E-value=0.03 Score=57.70 Aligned_cols=41 Identities=22% Similarity=0.244 Sum_probs=31.6
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
...+++|+|+||+||||++..++.. ....+..+++|+.+.-
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~--~~~~g~~vlyi~~E~s 113 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQ--AQKAGGTCAFIDAEHA 113 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCC
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHH--HHHCCCeEEEEECCCC
Confidence 4568999999999999999998765 2223467889988753
No 314
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=93.77 E-value=0.044 Score=48.72 Aligned_cols=26 Identities=15% Similarity=0.328 Sum_probs=21.8
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcC
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
..+.-+++.|.+|+||||+.+.+...
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34556778999999999999999876
No 315
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.76 E-value=0.046 Score=50.26 Aligned_cols=25 Identities=20% Similarity=0.494 Sum_probs=20.7
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcC
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
++..+++.|.+|+||||++..++..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3455667799999999999999875
No 316
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=93.75 E-value=0.037 Score=59.79 Aligned_cols=26 Identities=38% Similarity=0.465 Sum_probs=22.8
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcC
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
....++-+.|+|||||||+.+.|+..
T Consensus 23 ~~Gei~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 23 KNNTILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 35679999999999999999999764
No 317
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=93.75 E-value=0.035 Score=56.51 Aligned_cols=36 Identities=22% Similarity=0.179 Sum_probs=26.6
Q ss_pred EEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccc
Q 044777 217 LLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEAD 254 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaD 254 (513)
-+++.|++||||||+++.++.. ....+..++++|++
T Consensus 37 ~~~i~G~~G~GKs~~~~~~~~~--~~~~~~~~~~~D~~ 72 (392)
T 4ag6_A 37 NWTILAKPGAGKSFTAKMLLLR--EYMQGSRVIIIDPE 72 (392)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH--HHTTTCCEEEEESS
T ss_pred ceEEEcCCCCCHHHHHHHHHHH--HHHCCCEEEEEeCC
Confidence 3578999999999999998765 22234566777764
No 318
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=93.75 E-value=0.038 Score=49.29 Aligned_cols=27 Identities=19% Similarity=0.313 Sum_probs=22.6
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEP 239 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~ 239 (513)
..+.=|++.|.+|+||||+++.+....
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCC
Confidence 345568899999999999999998764
No 319
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=93.73 E-value=0.043 Score=53.76 Aligned_cols=41 Identities=24% Similarity=0.212 Sum_probs=27.7
Q ss_pred CCCCCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEec
Q 044777 210 LGDRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIE 252 (513)
Q Consensus 210 ~~~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvIn 252 (513)
+...+..++++.|+|||||||.+-.++.. ....+..++++.
T Consensus 14 ~~~~~g~l~v~~G~MgsGKTT~lL~~~~r--~~~~g~kvli~k 54 (234)
T 2orv_A 14 PSKTRGQIQVILGPMFSGKSTELMRRVRR--FQIAQYKCLVIK 54 (234)
T ss_dssp ----CCEEEEEECCTTSCHHHHHHHHHHH--HHTTTCCEEEEE
T ss_pred CCCCceEEEEEECCCCCcHHHHHHHHHHH--HHHCCCeEEEEe
Confidence 33556789999999999999987777654 333455666654
No 320
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=93.71 E-value=0.023 Score=55.01 Aligned_cols=24 Identities=21% Similarity=0.142 Sum_probs=21.3
Q ss_pred cEEEEEecCCCCchHHHHHHHhcC
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
...+++.||||+||||++..++..
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999999875
No 321
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.69 E-value=0.048 Score=47.50 Aligned_cols=26 Identities=27% Similarity=0.448 Sum_probs=22.2
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcC
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
.++.-+++.|.+|+||||+.+.+...
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35566788999999999999999875
No 322
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=93.68 E-value=0.042 Score=46.61 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=20.6
Q ss_pred EEEEEecCCCCchHHHHHHHhcCc
Q 044777 216 VLLFMGGGMGAGKSTVLKDILKEP 239 (513)
Q Consensus 216 ~LILmaG~pGAGKSTla~~Ll~~~ 239 (513)
.-+++.|.+|+||||+++.+....
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 447889999999999999998763
No 323
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=93.65 E-value=0.021 Score=59.71 Aligned_cols=43 Identities=26% Similarity=0.325 Sum_probs=30.4
Q ss_pred cEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccc
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFK 257 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR 257 (513)
+.-+++.|+||+||||+++.++....-...+..++++++..+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~ 172 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFL 172 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHH
Confidence 5567899999999999999998741000013466788877663
No 324
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=93.63 E-value=0.074 Score=59.03 Aligned_cols=43 Identities=21% Similarity=0.481 Sum_probs=33.1
Q ss_pred CcE-EEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccccc
Q 044777 214 SPV-LLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKE 258 (513)
Q Consensus 214 ~P~-LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~ 258 (513)
+|. -+++.|+||+|||++++.++...+ ..+.+++.||..++..
T Consensus 519 ~p~~~~Ll~Gp~GtGKT~lA~ala~~l~--~~~~~~i~i~~s~~~~ 562 (758)
T 3pxi_A 519 RPIGSFIFLGPTGVGKTELARALAESIF--GDEESMIRIDMSEYME 562 (758)
T ss_dssp SCSEEEEEESCTTSSHHHHHHHHHHHHH--SCTTCEEEEEGGGGCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhc--CCCcceEEEechhccc
Confidence 443 588999999999999999988621 2346788888887754
No 325
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=93.62 E-value=0.037 Score=49.07 Aligned_cols=30 Identities=20% Similarity=0.162 Sum_probs=21.8
Q ss_pred cCCCCCcEEEEEecCCCCchHHHHHHHhcC
Q 044777 209 ALGDRSPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 209 ~~~~~~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
.++..++.-+++.|.+|+||||+.+.+...
T Consensus 15 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 15 VPRGSQEHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp ------CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred cCCCCceeEEEEECCCCCCHHHHHHHHhcC
Confidence 334455677899999999999999999875
No 326
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=93.52 E-value=0.036 Score=55.08 Aligned_cols=23 Identities=26% Similarity=0.515 Sum_probs=20.7
Q ss_pred cEEEEEecCCCCchHHHHHHHhcC
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
..++.+.|+|||||||+++.|. .
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~ 187 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-G 187 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-S
T ss_pred CcEEEEECCCCCCHHHHHHHHH-H
Confidence 4578899999999999999998 5
No 327
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.50 E-value=0.046 Score=46.87 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=21.5
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcC
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
.+.=+++.|.+|+||||+.+.+...
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcC
Confidence 4456788999999999999999875
No 328
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.50 E-value=0.039 Score=47.16 Aligned_cols=21 Identities=29% Similarity=0.537 Sum_probs=18.8
Q ss_pred EEEecCCCCchHHHHHHHhcC
Q 044777 218 LFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 218 ILmaG~pGAGKSTla~~Ll~~ 238 (513)
+++.|.+|+||||+++.+...
T Consensus 4 i~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 4 VVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEECCTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 577899999999999999875
No 329
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=93.49 E-value=0.055 Score=58.45 Aligned_cols=41 Identities=15% Similarity=0.292 Sum_probs=30.7
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFK 257 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR 257 (513)
....+.+.|+|||||||+.+.+..- ++ ...+-+.++.-.++
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~--~~-p~~G~i~~~g~~~~ 408 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRF--YD-VDSGSICLDGHDVR 408 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC--CC-CCCCEEEECCEEhh
Confidence 4468899999999999999999874 32 23466778775553
No 330
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.47 E-value=0.05 Score=46.34 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=21.4
Q ss_pred cEEEEEecCCCCchHHHHHHHhcCc
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKEP 239 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~~ 239 (513)
+.=+++.|.+|+||||+.+.+....
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCC
Confidence 4568899999999999999998653
No 331
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=93.41 E-value=0.036 Score=58.43 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=20.7
Q ss_pred EEEEEecCCCCchHHHHHHHhcC
Q 044777 216 VLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 216 ~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
.-+++.|+||+||||+++.+...
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~ 73 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARY 73 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHHH
Confidence 35788999999999999999886
No 332
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=93.40 E-value=0.047 Score=51.30 Aligned_cols=31 Identities=29% Similarity=0.322 Sum_probs=23.4
Q ss_pred CCCCCcEEEEEecCCCCchHHHHHHHhcCcc
Q 044777 210 LGDRSPVLLFMGGGMGAGKSTVLKDILKEPF 240 (513)
Q Consensus 210 ~~~~~P~LILmaG~pGAGKSTla~~Ll~~~f 240 (513)
.+...+.-|++.|.+|+||||+.+.|+...+
T Consensus 24 ~~~~~~~~i~lvG~~g~GKStlin~l~g~~~ 54 (239)
T 3lxx_A 24 EPRNSQLRIVLVGKTGAGKSATGNSILGRKV 54 (239)
T ss_dssp ----CEEEEEEECCTTSSHHHHHHHHHTSCC
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHcCCCc
Confidence 3344566788999999999999999988644
No 333
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=93.36 E-value=0.038 Score=59.49 Aligned_cols=38 Identities=26% Similarity=0.347 Sum_probs=28.5
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
.+..+++.||||+||||+++.++... +.....|+.+.+
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l-----~~~~~~i~~~~~ 144 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSL-----GRKFVRISLGGV 144 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHH-----TCEEEEECCCC-
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhc-----CCCeEEEEeccc
Confidence 45588999999999999999998751 245566666554
No 334
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.33 E-value=0.05 Score=47.27 Aligned_cols=26 Identities=15% Similarity=0.461 Sum_probs=21.9
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcC
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
..+.-+++.|.+|+||||+.+.+...
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhC
Confidence 34566889999999999999999876
No 335
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.31 E-value=0.067 Score=56.31 Aligned_cols=73 Identities=11% Similarity=0.157 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHh-c---CCCCCCcccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEec
Q 044777 177 VARVFTTLVEEMKAM-G---LAPNDDSQCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIE 252 (513)
Q Consensus 177 v~r~~~~~ve~~~~~-~---~~~~~~~~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvIn 252 (513)
+..++...++++.+. + .-+.+-+...+++.- -....+++++|.||+||||++-.++.. ....+.++++++
T Consensus 159 ~~~~~~~~~~~i~~~~~~~~gi~TG~~~LD~~lgG----l~~G~liiIaG~pG~GKTtlal~ia~~--~a~~g~~vl~fS 232 (444)
T 3bgw_A 159 IDEALVTVYEEIESADGNITGVPSGFTELDRMTYG----YKRRNFVLIAARPSMGKTAFALKQAKN--MSDNDDVVNLHS 232 (444)
T ss_dssp CHHHHHHHHHHHHTCCSSCCSBCCSCHHHHHHHSS----BCSSCEEEEEECSSSSHHHHHHHHHHH--HHHTTCEEEEEC
T ss_pred HHHHHHHHHHHHHHhhcCCCCcCCCcHHHHhhcCC----CCCCcEEEEEeCCCCChHHHHHHHHHH--HHHcCCEEEEEE
Confidence 445566666666543 1 112234444555531 234569999999999999999999875 222245677776
Q ss_pred ccc
Q 044777 253 ADA 255 (513)
Q Consensus 253 aDe 255 (513)
.+.
T Consensus 233 lEm 235 (444)
T 3bgw_A 233 LEM 235 (444)
T ss_dssp SSS
T ss_pred CCC
Confidence 654
No 336
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=93.29 E-value=0.044 Score=55.78 Aligned_cols=23 Identities=22% Similarity=0.472 Sum_probs=21.1
Q ss_pred CcEEEEEecCCCCchHHHHHHHh
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDIL 236 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll 236 (513)
.|-+.++.|+|||||||+..++.
T Consensus 24 ~~gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 24 EKGIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 56899999999999999999985
No 337
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.28 E-value=0.095 Score=54.79 Aligned_cols=41 Identities=12% Similarity=0.194 Sum_probs=29.4
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADA 255 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDe 255 (513)
...+++++|+||+||||++..++... -...+.++.+++.+.
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~-~~~~g~~Vl~~s~E~ 242 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNV-ATKTNENVAIFSLEM 242 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHH-HHHSSCCEEEEESSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH-HHhCCCcEEEEECCC
Confidence 45699999999999999999987651 111234667776543
No 338
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=93.27 E-value=0.038 Score=58.45 Aligned_cols=25 Identities=24% Similarity=0.448 Sum_probs=21.3
Q ss_pred CcEE--EEEecCCCCchHHHHHHHhcC
Q 044777 214 SPVL--LFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 214 ~P~L--ILmaG~pGAGKSTla~~Ll~~ 238 (513)
...+ +.+.|+|||||||+.+.|+..
T Consensus 39 ~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 39 QGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp -CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 4556 889999999999999999875
No 339
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.26 E-value=0.045 Score=46.91 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=20.6
Q ss_pred EEEEEecCCCCchHHHHHHHhcCc
Q 044777 216 VLLFMGGGMGAGKSTVLKDILKEP 239 (513)
Q Consensus 216 ~LILmaG~pGAGKSTla~~Ll~~~ 239 (513)
.=+++.|.+|+||||+.+.+....
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 347889999999999999998753
No 340
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.25 E-value=0.034 Score=55.39 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=20.1
Q ss_pred cEEEEEecCCCCchHHHHHHHh
Q 044777 215 PVLLFMGGGMGAGKSTVLKDIL 236 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll 236 (513)
|-+.++.|+|||||||+...+.
T Consensus 24 ~g~~~i~G~NGsGKS~ll~ai~ 45 (322)
T 1e69_A 24 DRVTAIVGPNGSGKSNIIDAIK 45 (322)
T ss_dssp SSEEEEECCTTTCSTHHHHHHH
T ss_pred CCcEEEECCCCCcHHHHHHHHH
Confidence 4489999999999999999997
No 341
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.25 E-value=0.037 Score=58.98 Aligned_cols=41 Identities=15% Similarity=0.147 Sum_probs=28.2
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADA 255 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDe 255 (513)
...++.+.|+|||||||+++.++-.+... .+.+.++|+..+
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~-~~~g~i~v~g~~ 78 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQFLYNGIIE-FDEPGVFVTFEE 78 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHH-HCCCEEEEESSS
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHh-CCCCEEEEEEeC
Confidence 56799999999999999999952111111 134677887655
No 342
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=93.25 E-value=0.061 Score=45.86 Aligned_cols=25 Identities=24% Similarity=0.314 Sum_probs=21.4
Q ss_pred cEEEEEecCCCCchHHHHHHHhcCc
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKEP 239 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~~ 239 (513)
+.=+++.|.+|+||||+.+.+....
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCc
Confidence 4557889999999999999998753
No 343
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.24 E-value=0.045 Score=47.00 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=20.8
Q ss_pred cEEEEEecCCCCchHHHHHHHhcC
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
+.-+++.|.+|+||||+++.+...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 345788999999999999999875
No 344
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=93.24 E-value=0.044 Score=49.51 Aligned_cols=40 Identities=25% Similarity=0.386 Sum_probs=31.8
Q ss_pred cEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
+++.+..+-.|+||||++..|+.. +...+..+.+||.|--
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~--la~~g~~vlliD~D~~ 41 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATA--LSRSGYNIAVVDTDPQ 41 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHH--HHHTTCCEEEEECCTT
T ss_pred eEEEEEeCCCCccHHHHHHHHHHH--HHHCCCeEEEEECCCC
Confidence 456677889999999999998775 4455678899999943
No 345
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=93.24 E-value=0.062 Score=47.25 Aligned_cols=27 Identities=22% Similarity=0.278 Sum_probs=22.5
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEP 239 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~ 239 (513)
....-+++.|.+|+||||+.+.+....
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCC
Confidence 345568899999999999999998653
No 346
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.23 E-value=0.051 Score=48.33 Aligned_cols=25 Identities=16% Similarity=0.339 Sum_probs=21.6
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcC
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
.+.-+++.|++|+||||+...+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4456788999999999999999876
No 347
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=93.21 E-value=0.055 Score=48.11 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=21.1
Q ss_pred cEEEEEecCCCCchHHHHHHHhcC
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
+.-+++.|.||+||||+.+.+...
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456889999999999999999875
No 348
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=93.20 E-value=0.053 Score=48.10 Aligned_cols=27 Identities=26% Similarity=0.345 Sum_probs=22.7
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEP 239 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~ 239 (513)
..+.=|++.|.+|+||||+++.+....
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCC
Confidence 345568999999999999999998753
No 349
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=93.18 E-value=0.052 Score=58.67 Aligned_cols=41 Identities=17% Similarity=0.313 Sum_probs=30.5
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFK 257 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR 257 (513)
....+.+.|+|||||||+.+.+..- ++ ...+-+.++.-.++
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g~--~~-p~~G~i~~~g~~~~ 408 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITRF--YD-IDEGHILMDGHDLR 408 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTT--TC-CSEEEEEETTEETT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhc--cC-CCCCeEEECCEEcc
Confidence 3458899999999999999999764 32 23456788775554
No 350
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=93.16 E-value=0.067 Score=53.46 Aligned_cols=40 Identities=28% Similarity=0.435 Sum_probs=33.5
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADA 255 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDe 255 (513)
+++++++.|..|.||||++..++.. +...+..+.+|++|-
T Consensus 13 m~~i~v~sgKGGvGKTTvA~~LA~~--lA~~G~rVLlvD~D~ 52 (324)
T 3zq6_A 13 KTTFVFIGGKGGVGKTTISAATALW--MARSGKKTLVISTDP 52 (324)
T ss_dssp BCEEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEECCS
T ss_pred CeEEEEEeCCCCchHHHHHHHHHHH--HHHCCCcEEEEeCCC
Confidence 4789999999999999999988764 344567888999997
No 351
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=93.15 E-value=0.041 Score=59.49 Aligned_cols=42 Identities=21% Similarity=0.339 Sum_probs=31.5
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKE 258 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~ 258 (513)
+...+.+.|+|||||||+.+.+... ++ ...+.+.++...++.
T Consensus 366 ~G~~~~ivG~sGsGKSTll~~l~g~--~~-p~~G~i~~~g~~~~~ 407 (578)
T 4a82_A 366 KGETVAFVGMSGGGKSTLINLIPRF--YD-VTSGQILIDGHNIKD 407 (578)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTTS--SC-CSEEEEEETTEEGGG
T ss_pred CCCEEEEECCCCChHHHHHHHHhcC--CC-CCCcEEEECCEEhhh
Confidence 4468899999999999999988764 32 234667888766643
No 352
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=93.14 E-value=0.048 Score=46.89 Aligned_cols=25 Identities=20% Similarity=0.456 Sum_probs=21.4
Q ss_pred cEEEEEecCCCCchHHHHHHHhcCc
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKEP 239 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~~ 239 (513)
+.=+++.|.+|+||||+.+.+....
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 3457889999999999999998763
No 353
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=93.14 E-value=0.068 Score=47.10 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=19.3
Q ss_pred EEEEecCCCCchHHHHHHHhcC
Q 044777 217 LLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~ 238 (513)
-+++.|.+|+||||+.+.+...
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4667899999999999999876
No 354
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=93.14 E-value=0.061 Score=48.09 Aligned_cols=27 Identities=22% Similarity=0.277 Sum_probs=22.2
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEP 239 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~ 239 (513)
..+.=|++.|.+|+||||+++.+....
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCC
Confidence 344567889999999999999998653
No 355
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=93.14 E-value=0.049 Score=48.36 Aligned_cols=25 Identities=24% Similarity=0.406 Sum_probs=21.8
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcC
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
++.-|++.|.+|+||||++..+...
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcC
Confidence 4567888999999999999999875
No 356
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=93.09 E-value=0.072 Score=51.42 Aligned_cols=38 Identities=24% Similarity=0.217 Sum_probs=28.8
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEec
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIE 252 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvIn 252 (513)
.+..++++.|+|||||||.+-.++.. +...+..++++.
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r--~~~~g~kVli~k 63 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRR--TQFAKQHAIVFK 63 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHH--HHHTTCCEEEEE
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHH--HHHCCCEEEEEE
Confidence 34589999999999999998888765 334455666664
No 357
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=93.08 E-value=0.046 Score=56.96 Aligned_cols=41 Identities=22% Similarity=0.310 Sum_probs=31.1
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFK 257 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR 257 (513)
....++.+.|||||||||+.+.|+.- .. ..+-+.|+...+.
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaGl--~~--~~G~I~i~G~~i~ 85 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLRL--LN--TEGEIQIDGVSWD 85 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTC--SE--EEEEEEESSCBTT
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCC--CC--CCeEEEECCEECC
Confidence 35568999999999999999999864 32 2466778775553
No 358
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=93.05 E-value=0.076 Score=46.65 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=22.5
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEP 239 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~ 239 (513)
.+.=|++.|.+|+||||+++.+....
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCc
Confidence 45668899999999999999998763
No 359
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=93.01 E-value=0.045 Score=58.98 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=22.6
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcC
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
....++.+.|+|||||||+.+.|...
T Consensus 45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 45 KEGMVVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35568999999999999999999864
No 360
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=92.99 E-value=0.052 Score=56.99 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=21.5
Q ss_pred CcEEEEEecCCCCchHHHHHHHhc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILK 237 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~ 237 (513)
.+..+.+.|+|||||||+.+.|..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 455888999999999999999987
No 361
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=92.97 E-value=0.052 Score=47.21 Aligned_cols=25 Identities=24% Similarity=0.397 Sum_probs=21.4
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcC
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
.+.=+++.|.+|+||||+.+.+...
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcC
Confidence 3456789999999999999999875
No 362
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=92.97 E-value=0.051 Score=53.89 Aligned_cols=39 Identities=21% Similarity=0.334 Sum_probs=28.9
Q ss_pred EEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccc
Q 044777 217 LLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFK 257 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR 257 (513)
-+++.|+||+|||++++.+.... ...+..++.||+..+-
T Consensus 27 ~vLi~Ge~GtGKt~lAr~i~~~~--~~~~~~~v~v~~~~~~ 65 (304)
T 1ojl_A 27 TVLIHGDSGTGKELVARALHACS--ARSDRPLVTLNCAALN 65 (304)
T ss_dssp CEEEESCTTSCHHHHHHHHHHHS--SCSSSCCCEEECSSCC
T ss_pred cEEEECCCCchHHHHHHHHHHhC--cccCCCeEEEeCCCCC
Confidence 46789999999999999998741 1123467788877663
No 363
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=92.96 E-value=0.069 Score=46.21 Aligned_cols=25 Identities=16% Similarity=0.218 Sum_probs=21.5
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcC
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
.+.=+++.|.+|+||||+.+.+...
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEEEECCCCccHHHHHHHHhcC
Confidence 3456889999999999999999875
No 364
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=92.96 E-value=0.048 Score=56.39 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=21.3
Q ss_pred CcEEEEEecCCCCchHHHHHHHhc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILK 237 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~ 237 (513)
.|.+.+|.|+|||||||+...+.-
T Consensus 25 ~~~~~~i~G~nG~GKstll~ai~~ 48 (430)
T 1w1w_A 25 ESNFTSIIGPNGSGKSNMMDAISF 48 (430)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 467899999999999999999864
No 365
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=92.91 E-value=0.059 Score=47.94 Aligned_cols=28 Identities=18% Similarity=0.368 Sum_probs=22.3
Q ss_pred CCCcEEEEEecCCCCchHHHHHHHhcCc
Q 044777 212 DRSPVLLFMGGGMGAGKSTVLKDILKEP 239 (513)
Q Consensus 212 ~~~P~LILmaG~pGAGKSTla~~Ll~~~ 239 (513)
...+.-|+|.|.+|+||||+...+....
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSCCC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4455678889999999999999998763
No 366
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=92.89 E-value=0.058 Score=58.59 Aligned_cols=42 Identities=12% Similarity=0.327 Sum_probs=31.8
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKE 258 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~ 258 (513)
....+.+.|+|||||||+.+.++.. ++ ...+.+.++.-.++.
T Consensus 380 ~G~~~~ivG~sGsGKSTll~~l~g~--~~-p~~G~i~~~g~~i~~ 421 (598)
T 3qf4_B 380 PGQKVALVGPTGSGKTTIVNLLMRF--YD-VDRGQILVDGIDIRK 421 (598)
T ss_dssp TTCEEEEECCTTSSTTHHHHHHTTS--SC-CSEEEEEETTEEGGG
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC--cC-CCCeEEEECCEEhhh
Confidence 4568999999999999999999874 32 234667888766643
No 367
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=92.89 E-value=0.099 Score=59.38 Aligned_cols=39 Identities=23% Similarity=0.324 Sum_probs=30.4
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
..|.=+|+.||||+|||.++++++.+ .+.+++.+++.++
T Consensus 509 ~~~~gvLl~GPPGtGKT~lAkaiA~e-----~~~~f~~v~~~~l 547 (806)
T 3cf2_A 509 TPSKGVLFYGPPGCGKTLLAKAIANE-----CQANFISIKGPEL 547 (806)
T ss_dssp CCCSCCEEESSTTSSHHHHHHHHHHT-----TTCEEEECCHHHH
T ss_pred CCCceEEEecCCCCCchHHHHHHHHH-----hCCceEEeccchh
Confidence 45667899999999999999999998 2355566665555
No 368
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=92.89 E-value=0.08 Score=45.61 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=21.7
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcC
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
++.-+++.|.+|+||||+.+.+...
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 4566889999999999999999765
No 369
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=92.88 E-value=0.05 Score=48.59 Aligned_cols=22 Identities=36% Similarity=0.720 Sum_probs=19.4
Q ss_pred EEEEecCCCCchHHHHHHHhcC
Q 044777 217 LLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~ 238 (513)
-+++.|.+|+||||+.+.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3688999999999999999863
No 370
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=92.88 E-value=0.076 Score=46.19 Aligned_cols=25 Identities=16% Similarity=0.259 Sum_probs=21.7
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcC
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
++.=+++.|.+|+||||+.+.+...
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhC
Confidence 4566889999999999999999865
No 371
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=92.87 E-value=0.058 Score=52.68 Aligned_cols=40 Identities=20% Similarity=0.241 Sum_probs=30.8
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADA 255 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDe 255 (513)
++.+|.+.|-.|+||||++-.|+.. +...+..+.+||.|-
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA~~--La~~G~~VlliD~D~ 79 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLSAA--FSILGKRVLQIGCDP 79 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEESS
T ss_pred CceEEEEECCCCccHHHHHHHHHHH--HHHCCCeEEEEeCCC
Confidence 4555555599999999999988764 444567889999995
No 372
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=92.87 E-value=0.055 Score=46.64 Aligned_cols=25 Identities=12% Similarity=0.150 Sum_probs=21.4
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcC
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
.+.=+++.|.+|+||||+.+.+...
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3456788999999999999999875
No 373
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.86 E-value=0.055 Score=47.48 Aligned_cols=26 Identities=27% Similarity=0.353 Sum_probs=22.2
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcC
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
.++.-+++.|.+|+||||+...+...
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~ 41 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIG 41 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 35677889999999999999999754
No 374
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=92.85 E-value=0.057 Score=53.61 Aligned_cols=30 Identities=23% Similarity=0.235 Sum_probs=24.7
Q ss_pred CCCCCcEEEEEecCCCCchHHHHHHHhcCc
Q 044777 210 LGDRSPVLLFMGGGMGAGKSTVLKDILKEP 239 (513)
Q Consensus 210 ~~~~~P~LILmaG~pGAGKSTla~~Ll~~~ 239 (513)
+++..|-.+.+.|.||+||||+.++|....
T Consensus 5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 445667899999999999999999998763
No 375
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=92.84 E-value=0.052 Score=56.04 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=21.3
Q ss_pred cEEEEEecCCCCchHHHHHHHhcC
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
..++.+.|+|||||||+++.|+..
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCC
T ss_pred CCEEEEECCCCccHHHHHHHHhcc
Confidence 347889999999999999999875
No 376
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=92.83 E-value=0.071 Score=45.64 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=20.8
Q ss_pred cEEEEEecCCCCchHHHHHHHhcC
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
+.=+++.|.+|+||||+.+.+...
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 345788999999999999999865
No 377
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=92.80 E-value=0.055 Score=58.62 Aligned_cols=41 Identities=27% Similarity=0.433 Sum_probs=30.4
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFK 257 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR 257 (513)
....+.+.|+|||||||+.+.+..- ++ ...+-+.++.-.++
T Consensus 369 ~G~~~~ivG~sGsGKSTLl~~l~g~--~~-p~~G~i~~~g~~i~ 409 (595)
T 2yl4_A 369 SGSVTALVGPSGSGKSTVLSLLLRL--YD-PASGTISLDGHDIR 409 (595)
T ss_dssp TTCEEEEECCTTSSSTHHHHHHTTS--SC-CSEEEEEETTEETT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC--cC-CCCcEEEECCEEhh
Confidence 3457889999999999999999874 32 23466788775554
No 378
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=92.78 E-value=0.053 Score=47.10 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=21.4
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcC
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
.+.=|++.|.+|+||||+.+.+...
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC
Confidence 3456788999999999999999865
No 379
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=92.75 E-value=0.043 Score=55.72 Aligned_cols=46 Identities=13% Similarity=0.182 Sum_probs=30.6
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcc-cccC----CCCeEEeccccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPF-WAGA----AGNAVVIEADAFKE 258 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f-~~~~----~~~aVvInaDefR~ 258 (513)
..|..+++.|+||+|||++++.++.+.. +... .-..+.||+-.+..
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t 93 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAG 93 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC-
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCC
Confidence 3677789999999999999999987520 0000 12356778766543
No 380
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=92.75 E-value=0.052 Score=46.69 Aligned_cols=21 Identities=24% Similarity=0.308 Sum_probs=18.8
Q ss_pred EEEecCCCCchHHHHHHHhcC
Q 044777 218 LFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 218 ILmaG~pGAGKSTla~~Ll~~ 238 (513)
+++.|.+|+||||+.+.+...
T Consensus 5 i~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHCCC
T ss_pred EEEECCCCCCHHHHHHHHcCc
Confidence 678999999999999999754
No 381
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=92.73 E-value=0.09 Score=48.78 Aligned_cols=27 Identities=15% Similarity=0.294 Sum_probs=23.0
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEP 239 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~ 239 (513)
..+.-|++.|.+|+||||++..+....
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~ 53 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRAN 53 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456678889999999999999998763
No 382
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=92.72 E-value=0.19 Score=53.17 Aligned_cols=25 Identities=24% Similarity=0.422 Sum_probs=22.0
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILK 237 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~ 237 (513)
..+.++.|.|++|.||||++..+..
T Consensus 145 ~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 145 GEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp TSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CCCceEEEEcCCCCCHHHHHHHHHh
Confidence 3567999999999999999999865
No 383
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=92.70 E-value=0.074 Score=53.89 Aligned_cols=41 Identities=22% Similarity=0.293 Sum_probs=33.9
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADA 255 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDe 255 (513)
..++++++.|..|.||||++..++.. +...+..+.+|+.|-
T Consensus 24 ~~~~i~v~sgKGGvGKTTvA~~LA~~--lA~~G~rVLlvD~D~ 64 (349)
T 3ug7_A 24 DGTKYIMFGGKGGVGKTTMSAATGVY--LAEKGLKVVIVSTDP 64 (349)
T ss_dssp CSCEEEEEECSSSTTHHHHHHHHHHH--HHHSSCCEEEEECCT
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHH--HHHCCCeEEEEeCCC
Confidence 46789999999999999999988764 334467888999997
No 384
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=92.68 E-value=0.071 Score=50.62 Aligned_cols=28 Identities=32% Similarity=0.515 Sum_probs=22.5
Q ss_pred CCCcEEEEEecCCCCchHHHHHHHhcCc
Q 044777 212 DRSPVLLFMGGGMGAGKSTVLKDILKEP 239 (513)
Q Consensus 212 ~~~P~LILmaG~pGAGKSTla~~Ll~~~ 239 (513)
...+.-|++.|.+||||||+...|+...
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSC
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCC
Confidence 4456678889999999999999998753
No 385
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=92.68 E-value=0.071 Score=46.52 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=22.1
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEP 239 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~ 239 (513)
.+.=|++.|.+|+||||+++.+....
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCC
Confidence 45568899999999999999998753
No 386
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=92.67 E-value=0.065 Score=55.13 Aligned_cols=22 Identities=27% Similarity=0.309 Sum_probs=20.0
Q ss_pred cEEEEEecCCCCchHHHHHHHh
Q 044777 215 PVLLFMGGGMGAGKSTVLKDIL 236 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll 236 (513)
|-+.++.|+|||||||+.+.+.
T Consensus 26 ~g~~~i~G~nG~GKttll~ai~ 47 (359)
T 2o5v_A 26 EGVTGIYGENGAGKTNLLEAAY 47 (359)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCChhHHHHHHH
Confidence 4499999999999999999986
No 387
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=92.67 E-value=0.064 Score=46.27 Aligned_cols=22 Identities=27% Similarity=0.284 Sum_probs=19.2
Q ss_pred EEEEecCCCCchHHHHHHHhcC
Q 044777 217 LLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~ 238 (513)
=+++.|.+|+||||+.+.+...
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 3688999999999999999754
No 388
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=92.66 E-value=0.053 Score=53.69 Aligned_cols=23 Identities=35% Similarity=0.414 Sum_probs=20.5
Q ss_pred EEEEEecCCCCchHHHHHHHhcC
Q 044777 216 VLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 216 ~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
.++.+.|+|||||||+.+.|...
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTT
T ss_pred CeEEEECCCCCcHHHHHHHhccc
Confidence 47889999999999999999764
No 389
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=92.64 E-value=0.097 Score=46.77 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=21.4
Q ss_pred cEEEEEecCCCCchHHHHHHHhcCc
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKEP 239 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~~ 239 (513)
+.=|++.|.+|+||||+.+.+....
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4558899999999999999998753
No 390
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=92.63 E-value=0.047 Score=57.96 Aligned_cols=24 Identities=17% Similarity=0.290 Sum_probs=20.3
Q ss_pred cEEEEEecCCCCchHHHHHHHhcC
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
..++.|.|+|||||||+.+.|+.-
T Consensus 138 Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCc
Confidence 346788899999999999999763
No 391
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=92.61 E-value=0.063 Score=45.99 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=21.0
Q ss_pred cEEEEEecCCCCchHHHHHHHhcC
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
+.=+++.|.+|+||||+.+.+...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 456789999999999999999865
No 392
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=92.60 E-value=0.021 Score=57.99 Aligned_cols=19 Identities=32% Similarity=0.566 Sum_probs=18.2
Q ss_pred EEEEecCCCCchHHHHHHH
Q 044777 217 LLFMGGGMGAGKSTVLKDI 235 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~L 235 (513)
++.+.|+|||||||+.+.|
T Consensus 62 ~~~lvG~NGaGKStLl~aI 80 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDAL 80 (415)
T ss_dssp EEEEEESHHHHHHHHTHHH
T ss_pred cEEEECCCCCCHHHHHHHH
Confidence 9999999999999999888
No 393
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=92.54 E-value=0.086 Score=53.55 Aligned_cols=39 Identities=26% Similarity=0.399 Sum_probs=32.6
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEAD 254 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaD 254 (513)
.++++++.|..|.||||++..++.. +...+..+.+|++|
T Consensus 15 ~~~i~~~sgkGGvGKTt~a~~lA~~--la~~g~~vllid~D 53 (334)
T 3iqw_A 15 SLRWIFVGGKGGVGKTTTSCSLAIQ--LAKVRRSVLLLSTD 53 (334)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHH--HTTSSSCEEEEECC
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHH--HHhCCCcEEEEECC
Confidence 4678899999999999999998764 44456788899999
No 394
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=92.54 E-value=0.081 Score=47.21 Aligned_cols=26 Identities=35% Similarity=0.447 Sum_probs=22.1
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcC
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
..+.-+++.|.+|+||||+.+.+...
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 34567888999999999999999865
No 395
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=92.52 E-value=0.16 Score=56.05 Aligned_cols=38 Identities=18% Similarity=0.284 Sum_probs=30.2
Q ss_pred EEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccccc
Q 044777 216 VLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKE 258 (513)
Q Consensus 216 ~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~ 258 (513)
.-+++.|+||+|||++++.++... +.+++.||..++.+
T Consensus 489 ~~~ll~G~~GtGKT~la~~la~~l-----~~~~~~i~~s~~~~ 526 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVTVQLSKAL-----GIELLRFDMSEYME 526 (758)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH-----TCEEEEEEGGGCSS
T ss_pred eEEEEECCCCCcHHHHHHHHHHHh-----cCCEEEEechhhcc
Confidence 368999999999999999998862 35667788777643
No 396
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=92.51 E-value=0.077 Score=46.51 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=21.8
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcC
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
.+.=|++.|.+|+||||+++.+...
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcC
Confidence 4566889999999999999999875
No 397
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=92.50 E-value=0.075 Score=45.62 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=20.7
Q ss_pred cEEEEEecCCCCchHHHHHHHhcC
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
+.=+++.|.+|+||||+.+.+...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 345788999999999999999865
No 398
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=92.48 E-value=0.097 Score=57.18 Aligned_cols=43 Identities=23% Similarity=0.462 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhcCCCCCCcccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcC
Q 044777 180 VFTTLVEEMKAMGLAPNDDSQCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 180 ~~~~~ve~~~~~~~~~~~~~~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
.+-.++..+...|+.. .+ .-|. +.+.|+|||||||+.+.|...
T Consensus 26 ~ll~~id~l~~~gv~~-------~l--------~lp~-iaIvG~nGsGKSTLL~~I~Gl 68 (608)
T 3szr_A 26 PCIDLIDSLRALGVEQ-------DL--------ALPA-IAVIGDQSSGKSSVLEALSGV 68 (608)
T ss_dssp HHHHHHHHHHHHSCCS-------SC--------CCCC-EECCCCTTSCHHHHHHHHHSC
T ss_pred HHHHHHHHHHhCCCCC-------cc--------cCCe-EEEECCCCChHHHHHHHHhCC
Confidence 3446677788888641 11 1233 788999999999999999875
No 399
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=92.48 E-value=0.074 Score=51.54 Aligned_cols=35 Identities=20% Similarity=0.238 Sum_probs=27.5
Q ss_pred EEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 217 LLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
+++|.|++|+||||+++.+.... ....++++....
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~~-----~~~~~~~~~~~~ 66 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINEL-----NLPYIYLDLRKF 66 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH-----TCCEEEEEGGGG
T ss_pred cEEEECCCCCCHHHHHHHHHHhc-----CCCEEEEEchhh
Confidence 88999999999999999998751 234677776643
No 400
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=92.46 E-value=0.064 Score=47.21 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=19.4
Q ss_pred EEEecCCCCchHHHHHHHhcCc
Q 044777 218 LFMGGGMGAGKSTVLKDILKEP 239 (513)
Q Consensus 218 ILmaG~pGAGKSTla~~Ll~~~ 239 (513)
+++.|.+|+||||+.+.+....
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCcC
Confidence 5788999999999999998763
No 401
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=92.45 E-value=0.058 Score=55.18 Aligned_cols=40 Identities=13% Similarity=0.258 Sum_probs=29.4
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADA 255 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDe 255 (513)
...+++++|.||+||||++..++.. ....+.++.+++.+.
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~--~a~~g~~Vl~fSlEm 84 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLS--ALNDDRGVAVFSLEM 84 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHH--HHHTTCEEEEEESSS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH--HHHcCCeEEEEeCCC
Confidence 4469999999999999999998765 222345566776543
No 402
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=92.45 E-value=0.06 Score=58.05 Aligned_cols=25 Identities=24% Similarity=0.246 Sum_probs=22.0
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcC
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
...++.+.|+|||||||+.+.|...
T Consensus 311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 311 KGEVIGIVGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568899999999999999999864
No 403
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=92.37 E-value=0.094 Score=47.11 Aligned_cols=28 Identities=18% Similarity=0.309 Sum_probs=23.3
Q ss_pred CCCcEEEEEecCCCCchHHHHHHHhcCc
Q 044777 212 DRSPVLLFMGGGMGAGKSTVLKDILKEP 239 (513)
Q Consensus 212 ~~~P~LILmaG~pGAGKSTla~~Ll~~~ 239 (513)
..+..=+++.|.+|+||||++..+....
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLTGT 44 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHSS
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 4455678999999999999999988764
No 404
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=92.32 E-value=0.076 Score=57.64 Aligned_cols=41 Identities=22% Similarity=0.259 Sum_probs=30.8
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFK 257 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR 257 (513)
....+.+.|+|||||||+.+.++.. ++ ...+.+.++.-.++
T Consensus 368 ~Ge~~~ivG~sGsGKSTll~~l~g~--~~-~~~G~i~i~g~~i~ 408 (587)
T 3qf4_A 368 PGSLVAVLGETGSGKSTLMNLIPRL--ID-PERGRVEVDELDVR 408 (587)
T ss_dssp TTCEEEEECSSSSSHHHHHHTTTTS--SC-CSEEEEEESSSBGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC--cc-CCCcEEEECCEEcc
Confidence 3458899999999999999988764 32 23466788776664
No 405
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=92.31 E-value=0.082 Score=45.76 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=22.0
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEP 239 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~ 239 (513)
...-+++.|.+|+||||+.+.+....
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCC
Confidence 34568889999999999999998763
No 406
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=92.30 E-value=0.069 Score=46.28 Aligned_cols=24 Identities=17% Similarity=0.357 Sum_probs=20.6
Q ss_pred cEEEEEecCCCCchHHHHHHHhcC
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
+.-+++.|.+|+||||+.+.+...
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 356788899999999999999865
No 407
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=92.30 E-value=0.075 Score=56.60 Aligned_cols=40 Identities=13% Similarity=0.345 Sum_probs=28.0
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADA 255 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDe 255 (513)
+..++++.|+|||||||++..++.. ....+..++++..++
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~--~~~~G~~vi~~~~ee 319 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVEN--ACANKERAILFAYEE 319 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHH--HHTTTCCEEEEESSS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH--HHhCCCCEEEEEEeC
Confidence 4568999999999999999999764 211233455555443
No 408
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=92.29 E-value=0.079 Score=47.85 Aligned_cols=27 Identities=11% Similarity=0.091 Sum_probs=22.4
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEP 239 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~ 239 (513)
.++.=|++.|.+|+||||+++.+....
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCC
Confidence 345668899999999999999998763
No 409
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=92.29 E-value=0.072 Score=47.89 Aligned_cols=25 Identities=16% Similarity=0.412 Sum_probs=20.7
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcC
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
.+.=|++.|.+|+||||+++.+...
T Consensus 25 ~~~ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 25 FKLQVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHCC-
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 3445888999999999999999865
No 410
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=92.28 E-value=0.072 Score=51.57 Aligned_cols=34 Identities=26% Similarity=0.435 Sum_probs=27.2
Q ss_pred EEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 216 VLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 216 ~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
.+++|.|++|+||||+++.+... .+.++++.+..
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~-------~~~~~~~~~~~ 65 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNE-------RPGILIDCREL 65 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH-------SSEEEEEHHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHH-------cCcEEEEeecc
Confidence 47899999999999999999876 23677776543
No 411
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=92.26 E-value=0.076 Score=46.55 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=21.5
Q ss_pred cEEEEEecCCCCchHHHHHHHhcCc
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKEP 239 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~~ 239 (513)
+.=|++.|.+|+||||+.+.+....
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCC
Confidence 4567899999999999999998763
No 412
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=92.25 E-value=0.04 Score=53.98 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=19.6
Q ss_pred EEEecCCCCchHHHHHHHhcC
Q 044777 218 LFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 218 ILmaG~pGAGKSTla~~Ll~~ 238 (513)
+++.|+||+||||+++.+...
T Consensus 48 vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 48 VLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp EEEECCGGGCTTHHHHHHHHH
T ss_pred EEEECCCCccHHHHHHHHHHh
Confidence 789999999999999999875
No 413
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=92.19 E-value=0.066 Score=58.72 Aligned_cols=25 Identities=24% Similarity=0.246 Sum_probs=22.0
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcC
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
...++.|.|+|||||||+.+.|+..
T Consensus 381 ~Gei~~i~G~NGsGKSTLlk~l~Gl 405 (607)
T 3bk7_A 381 KGEVIGIVGPNGIGKTTFVKMLAGV 405 (607)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568899999999999999999864
No 414
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=92.17 E-value=0.082 Score=47.22 Aligned_cols=27 Identities=22% Similarity=0.203 Sum_probs=22.4
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEP 239 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~ 239 (513)
.++.=|++.|.+|+||||+.+.+....
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCC
Confidence 345568899999999999999998653
No 415
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=92.16 E-value=0.058 Score=53.61 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=18.5
Q ss_pred EEEEecCCCCchHHHHHHHhcC
Q 044777 217 LLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~ 238 (513)
=+++.|+|||||||+.+.|...
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3488999999999999998753
No 416
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=92.14 E-value=0.12 Score=48.01 Aligned_cols=41 Identities=12% Similarity=0.141 Sum_probs=32.5
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccC-CCCeEEeccccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGA-AGNAVVIEADAF 256 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~-~~~aVvInaDef 256 (513)
.+++.+..+-.|+||||++-.|+.. +... +..+.+||.|.-
T Consensus 4 ~~vI~v~s~kGGvGKTt~a~~LA~~--la~~~g~~VlliD~D~~ 45 (245)
T 3ea0_A 4 KRVFGFVSAKGGDGGSCIAANFAFA--LSQEPDIHVLAVDISLP 45 (245)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHH--HTTSTTCCEEEEECCTT
T ss_pred CeEEEEECCCCCcchHHHHHHHHHH--HHhCcCCCEEEEECCCC
Confidence 4566677788999999999999875 4445 678899999965
No 417
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=92.14 E-value=0.071 Score=46.78 Aligned_cols=25 Identities=16% Similarity=0.167 Sum_probs=21.4
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcC
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
++.-|++.|.+|+||||+++.+...
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcC
Confidence 3456788999999999999999865
No 418
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=92.12 E-value=0.074 Score=46.75 Aligned_cols=26 Identities=23% Similarity=0.410 Sum_probs=21.8
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEP 239 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~ 239 (513)
.+.=|++.|.+|+||||+++.+....
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCC
Confidence 34567889999999999999998653
No 419
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=92.11 E-value=0.16 Score=48.81 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=20.1
Q ss_pred EEEEecCCCCchHHHHHHHhcCc
Q 044777 217 LLFMGGGMGAGKSTVLKDILKEP 239 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~~ 239 (513)
-|++.|.+|+||||+.+.|....
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 46778999999999999998764
No 420
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=92.10 E-value=0.079 Score=48.15 Aligned_cols=26 Identities=23% Similarity=0.252 Sum_probs=20.9
Q ss_pred CCCcEEEEEecCCCCchHHHHHHHhc
Q 044777 212 DRSPVLLFMGGGMGAGKSTVLKDILK 237 (513)
Q Consensus 212 ~~~P~LILmaG~pGAGKSTla~~Ll~ 237 (513)
.....-+++.|.+|+||||+++++..
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCC
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHh
Confidence 34556789999999999999999953
No 421
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.09 E-value=0.1 Score=46.29 Aligned_cols=26 Identities=23% Similarity=0.328 Sum_probs=21.9
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEP 239 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~ 239 (513)
.+.=|++.|.+|+||||+.+.+....
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~ 32 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGT 32 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCC
Confidence 45667889999999999999998753
No 422
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=92.07 E-value=0.067 Score=57.78 Aligned_cols=25 Identities=24% Similarity=0.302 Sum_probs=21.7
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcC
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
...++.+.|+|||||||+++.|+..
T Consensus 293 ~Gei~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 293 EGEIIGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4458899999999999999999764
No 423
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=92.06 E-value=0.082 Score=46.10 Aligned_cols=26 Identities=31% Similarity=0.492 Sum_probs=21.9
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEP 239 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~ 239 (513)
.+.=+++.|.+|+||||+++.+....
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC
Confidence 34568889999999999999998753
No 424
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=92.06 E-value=0.071 Score=58.58 Aligned_cols=26 Identities=38% Similarity=0.397 Sum_probs=22.6
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcC
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
....++-+.|+|||||||+.+.|+..
T Consensus 101 ~~Gei~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 101 RPGQVLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcC
Confidence 35668999999999999999999864
No 425
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=92.04 E-value=0.075 Score=47.34 Aligned_cols=27 Identities=19% Similarity=0.267 Sum_probs=21.3
Q ss_pred CCCcEEEEEecCCCCchHHHHHHHhcC
Q 044777 212 DRSPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 212 ~~~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
..++.-|++.|.+|+||||+.+.+...
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 345567889999999999999999765
No 426
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=92.03 E-value=0.071 Score=60.38 Aligned_cols=25 Identities=24% Similarity=0.286 Sum_probs=21.5
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILK 237 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~ 237 (513)
....++++.|||||||||+.+.++.
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iag 629 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTAL 629 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCChHHHHHHHHH
Confidence 3456899999999999999998864
No 427
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=92.03 E-value=0.094 Score=54.36 Aligned_cols=37 Identities=8% Similarity=0.009 Sum_probs=29.6
Q ss_pred EEEEEecChHHHHHHHHHHHHhcCCcCchhHHHHHHH
Q 044777 370 ELVGVVCDAYLAVVRGIRRAIMCRRAVRVKSQLKSHK 406 (513)
Q Consensus 370 ~Lv~V~~dpelAv~Rv~~Rv~~gGh~VP~~~il~r~~ 406 (513)
..++|.+|+++.++|.++|-...|..-..+..++++.
T Consensus 291 ~~i~Vdad~ev~~~Rli~R~~~~Gl~~s~eea~~r~~ 327 (359)
T 2ga8_A 291 LVYKIDIDYEATEERVAKRHLQSGLVTTIAEGREKFR 327 (359)
T ss_dssp EEEEEECCHHHHHHHHHHHHHHTTSCSSHHHHHHHHH
T ss_pred EEEEEECCHHHHHHHHHHhhhccCCCCCHHHHHHHHH
Confidence 3578899999999999999888777556666666665
No 428
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=92.03 E-value=0.083 Score=47.90 Aligned_cols=26 Identities=23% Similarity=0.410 Sum_probs=21.4
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcC
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
..+.=|++.|.+|+||||+++.+...
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC-
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhC
Confidence 34566788999999999999999865
No 429
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=91.98 E-value=0.1 Score=46.01 Aligned_cols=26 Identities=38% Similarity=0.415 Sum_probs=22.0
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcC
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
.++.-+++.|.+|+||||+.+.+...
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 35667889999999999999999865
No 430
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=91.98 E-value=0.07 Score=58.53 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=22.6
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcC
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
....++.+.|+|||||||+.+.|+..
T Consensus 115 ~~Ge~~~LiG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 115 KDGMVVGIVGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhCC
Confidence 35568999999999999999999764
No 431
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=91.94 E-value=0.1 Score=52.95 Aligned_cols=25 Identities=28% Similarity=0.415 Sum_probs=22.2
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcC
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
...-+++.|++|+||||++-.+...
T Consensus 146 ~g~gvli~G~sG~GKStlal~l~~~ 170 (312)
T 1knx_A 146 FGVGVLLTGRSGIGKSECALDLINK 170 (312)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHTT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 3467999999999999999999876
No 432
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=91.91 E-value=0.52 Score=50.74 Aligned_cols=160 Identities=15% Similarity=-0.003 Sum_probs=79.3
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccccchhhhhhhhccccCchhhHHHHHhHhHHHHHHHH
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKESDVIYRALSSRSHVDMLQTAELVHQSSTDAASSL 292 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~~~p~y~~l~~~G~~Dp~qaae~v~~eAtrlA~~l 292 (513)
..|++|++-|.-||||+|.++.|... ... .++.++. + ..|.+.+.... + ..+.
T Consensus 41 ~~~vlIvfEG~D~AGKg~~Ik~l~~~--l~p--rg~~V~a---~--~~Pt~~E~~~~--y----------------l~R~ 93 (500)
T 3czp_A 41 RFPVIILINGIEGAGKGETVKLLNEW--MDP--RLIEVQS---F--LRPSDEELERP--P----------------QWRF 93 (500)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH--SCG--GGEEEEE---C--SSCCHHHHTSC--T----------------THHH
T ss_pred CCCEEEEEeCcCCCCHHHHHHHHHHh--cCc--cCCeEEE---e--CCCChhhccCC--h----------------hhhH
Confidence 47899999999999999999999875 111 1111111 1 11222211110 0 1111
Q ss_pred HHHHHHCCCcEEEECcCCChHHHHHHHHHHhhhhhcccccccccccccCCccccchhhhhhhhhhhhcccCCCCeEEEEE
Q 044777 293 LVTALNEGRDVIMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENYWDRIGEREQAQDGKMRKPYRIELV 372 (513)
Q Consensus 293 i~~aL~~GrsVIlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Yw~~v~~a~~~~~~~~~~gYrI~Lv 372 (513)
....=..|.-+|+|-+. ...++-. .+ + |. -..+.|-.+++..+.=++.....|+.+.-+
T Consensus 94 ~~~lP~~G~IvIfdRSw-----Ys~~~v~--rv------~--g~------~~~~~~~~~~~~i~~FE~~L~~~g~~i~Kf 152 (500)
T 3czp_A 94 WRRLPPKGRTGIFFGNW-----YSQMLYA--RV------E--GH------IKEAKLDQAIDAAERFERMLCDEGALLFKF 152 (500)
T ss_dssp HHHCCCTTCEEEEESCH-----HHHHHHH--HH------T--TS------SCHHHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHhCCCCCeEEEEeCch-----hhHHHHH--HH------h--cC------CCHHHHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 22233589999999553 2222110 00 1 10 111222222222211122235688888888
Q ss_pred EEecChHHHHHHHHHHHHhcCC---cCchhHH-HHHHHHHHHHHHHhhcccc
Q 044777 373 GVVCDAYLAVVRGIRRAIMCRR---AVRVKSQ-LKSHKRFANAFLTYCQLVD 420 (513)
Q Consensus 373 ~V~~dpelAv~Rv~~Rv~~gGh---~VP~~~i-l~r~~rf~~nf~~~~~lvD 420 (513)
+...+++....|...|...-.+ .-|.+.. +..|..+....+.++...|
T Consensus 153 fL~is~eeq~kRl~~R~~~p~k~Wk~s~~D~~~~~~~~~Y~~a~e~~l~~T~ 204 (500)
T 3czp_A 153 WFHLSKKQLKERLKALEKDPQHSWKLSPLDWKQSEVYDRFVHYGERVLRRTS 204 (500)
T ss_dssp EEECCHHHHHHCC-------------CSSCTTSHHHHHHHHHHHHHHHHHHC
T ss_pred EEECCHHHHHHHHHHHhcCCcccCCCCHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 8999999999999998653222 2222222 4556666666666665544
No 433
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=91.90 E-value=0.081 Score=52.31 Aligned_cols=39 Identities=18% Similarity=0.247 Sum_probs=28.5
Q ss_pred CCcccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcC
Q 044777 197 DDSQCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 197 ~~~~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
..+...+++.-. -....+++++|+||+||||++.+++..
T Consensus 83 G~~~LD~~l~GG---l~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 83 SSSELDSVLGGG---LESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SCHHHHHHTTSS---EETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CChhHHHhcCCC---ccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 445555665321 125679999999999999999998753
No 434
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=91.87 E-value=0.087 Score=45.18 Aligned_cols=21 Identities=33% Similarity=0.398 Sum_probs=19.0
Q ss_pred EEEecCCCCchHHHHHHHhcC
Q 044777 218 LFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 218 ILmaG~pGAGKSTla~~Ll~~ 238 (513)
+++.|.+|+||||+.+.+...
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 688999999999999999765
No 435
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=91.87 E-value=0.097 Score=53.21 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=21.9
Q ss_pred cEEEEEecCCCCchHHHHHHHhcC
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
..-+++.|++|+||||++..|...
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc
Confidence 467899999999999999999986
No 436
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=91.86 E-value=0.087 Score=46.05 Aligned_cols=25 Identities=16% Similarity=0.219 Sum_probs=21.2
Q ss_pred cEEEEEecCCCCchHHHHHHHhcCc
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKEP 239 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~~ 239 (513)
+.=+++.|.+|+||||+.+.+....
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~~ 29 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTNA 29 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCC
Confidence 4457889999999999999998653
No 437
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=91.82 E-value=0.081 Score=57.53 Aligned_cols=35 Identities=26% Similarity=0.271 Sum_probs=25.8
Q ss_pred cEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEe
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVI 251 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvI 251 (513)
..++++.|+||+||||++..++.. +...+..+.++
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~--l~~~g~~Vl~~ 238 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADL--AESLGLEVGLC 238 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHH--HHHTTCCEEEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH--HHhcCCeEEEe
Confidence 457888999999999999999874 43344454444
No 438
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=91.81 E-value=0.11 Score=52.15 Aligned_cols=40 Identities=25% Similarity=0.402 Sum_probs=32.4
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADA 255 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDe 255 (513)
.+.+++++|..|.||||++..++.. ....+..+.+|++|-
T Consensus 18 ~~~i~v~sgkGGvGKTTva~~LA~~--lA~~G~rVllvD~D~ 57 (329)
T 2woo_A 18 SLKWIFVGGKGGVGKTTTSCSLAIQ--MSKVRSSVLLISTDP 57 (329)
T ss_dssp TCCEEEEECSSSSSHHHHHHHHHHH--HHTSSSCEEEEECCT
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHH--HHHCCCeEEEEECCC
Confidence 4678899999999999999988764 344566788999995
No 439
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.77 E-value=0.11 Score=45.31 Aligned_cols=26 Identities=19% Similarity=0.331 Sum_probs=22.2
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEP 239 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~ 239 (513)
.+.-+++.|.+|+||||+.+.+....
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCC
Confidence 45568899999999999999998763
No 440
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=91.74 E-value=0.11 Score=49.62 Aligned_cols=47 Identities=23% Similarity=0.230 Sum_probs=25.7
Q ss_pred cccccCCCCCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccc
Q 044777 205 MAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEAD 254 (513)
Q Consensus 205 l~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaD 254 (513)
+.|... ..+.+|+++.|+|||||||-.-+.... +...+..++++.+.
T Consensus 11 ~~~~~~-~~~g~l~fiyG~MgsGKTt~Ll~~i~n--~~~~~~kvl~~kp~ 57 (195)
T 1w4r_A 11 LVPRGS-KTRGQIQVILGPMFSGKSTELMRRVRR--FQIAQYKCLVIKYA 57 (195)
T ss_dssp ---------CCEEEEEEECTTSCHHHHHHHHHHH--HHHTTCCEEEEEET
T ss_pred ccccCC-CCceEEEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEEccc
Confidence 444433 335789999999999999544433332 22234566677543
No 441
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=91.73 E-value=0.11 Score=49.62 Aligned_cols=41 Identities=22% Similarity=0.344 Sum_probs=29.7
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEe-ccccccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVI-EADAFKE 258 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvI-naDefR~ 258 (513)
.+.+|++.|.|||||+|++..+.+. +. ..++.++ =+|.+|+
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~--~g--~~~~~vv~msD~iK~ 51 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSR--LG--ADVCAVLRLSGPLKE 51 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHH--HC--TTTEEEECTHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHHH--cC--CCCceEEEccHHHHH
Confidence 5679999999999999999998773 10 1144434 5677764
No 442
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=91.71 E-value=0.11 Score=46.31 Aligned_cols=27 Identities=11% Similarity=0.101 Sum_probs=22.2
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEP 239 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~ 239 (513)
.++.=|++.|.+|+||||+.+.+....
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCC
Confidence 345678999999999999999998653
No 443
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=91.70 E-value=0.087 Score=54.09 Aligned_cols=34 Identities=12% Similarity=0.241 Sum_probs=25.9
Q ss_pred cEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecc
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEA 253 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvIna 253 (513)
..++++.|+||+||||++.+++.. .+..+.+|+.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~ 156 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATV 156 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEe
Confidence 456799999999999999999864 1234556665
No 444
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=91.70 E-value=0.037 Score=55.91 Aligned_cols=24 Identities=33% Similarity=0.457 Sum_probs=20.7
Q ss_pred cEEEEEecCCCCchHHHHHHHhcC
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
...+.+.|+|||||||+++.|...
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC-
T ss_pred CCEEEEECCCCCCHHHHHHHhccc
Confidence 358899999999999999999764
No 445
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=91.70 E-value=0.24 Score=47.66 Aligned_cols=26 Identities=27% Similarity=0.493 Sum_probs=22.3
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEP 239 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~ 239 (513)
.+.-+++.|.+|+||||+.+.|....
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 45678899999999999999998763
No 446
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=91.64 E-value=0.11 Score=46.58 Aligned_cols=26 Identities=15% Similarity=0.397 Sum_probs=22.3
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEP 239 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~ 239 (513)
.+.-|++.|.+|+||||+.+.+....
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC
Confidence 45678899999999999999998763
No 447
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=91.63 E-value=0.085 Score=56.55 Aligned_cols=22 Identities=36% Similarity=0.655 Sum_probs=20.0
Q ss_pred EEEEEecCCCCchHHHHHHHhc
Q 044777 216 VLLFMGGGMGAGKSTVLKDILK 237 (513)
Q Consensus 216 ~LILmaG~pGAGKSTla~~Ll~ 237 (513)
.++.+.|+|||||||+.+.|..
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 6889999999999999998864
No 448
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=91.62 E-value=0.1 Score=54.41 Aligned_cols=40 Identities=10% Similarity=0.057 Sum_probs=29.3
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEAD 254 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaD 254 (513)
...+++++|+||+||||++..++... -...+.++++++..
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~-a~~~g~~vl~~slE 238 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNA-ALKEGVGVGIYSLE 238 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHH-HHTTCCCEEEEESS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH-HHhCCCeEEEEECC
Confidence 45699999999999999999987651 11124467777664
No 449
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=91.59 E-value=0.088 Score=55.57 Aligned_cols=52 Identities=15% Similarity=0.242 Sum_probs=35.7
Q ss_pred CcccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcCcccccC-CCCeEEecccc
Q 044777 198 DSQCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGA-AGNAVVIEADA 255 (513)
Q Consensus 198 ~~~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~-~~~aVvInaDe 255 (513)
.+...+++. .-....+++|+|+||+||||++-+++.. .... +.++++++.+.
T Consensus 229 ~~~LD~~lg----Gl~~G~l~li~G~pG~GKT~lal~~a~~--~a~~~g~~vl~~s~E~ 281 (503)
T 1q57_A 229 CTGINDKTL----GARGGEVIMVTSGSGMVMSTFVRQQALQ--WGTAMGKKVGLAMLEE 281 (503)
T ss_dssp CTTHHHHHC----CCCTTCEEEEEESSCHHHHHHHHHHHHH--HTTTSCCCEEEEESSS
T ss_pred hhhhhHhhc----ccCCCeEEEEeecCCCCchHHHHHHHHH--HHHhcCCcEEEEeccC
Confidence 344455553 1235579999999999999999999875 2222 45677887654
No 450
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=91.58 E-value=0.082 Score=59.61 Aligned_cols=23 Identities=35% Similarity=0.381 Sum_probs=20.5
Q ss_pred cEEEEEecCCCCchHHHHHHHhc
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILK 237 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~ 237 (513)
..++++.|||||||||+.+.++.
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iag 598 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTAL 598 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHh
Confidence 56899999999999999998864
No 451
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=91.54 E-value=0.087 Score=57.88 Aligned_cols=23 Identities=35% Similarity=0.504 Sum_probs=20.5
Q ss_pred EEEEEecCCCCchHHHHHHHhcC
Q 044777 216 VLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 216 ~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
.++.+.|+|||||||+.+.|+..
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl 401 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGA 401 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCcHHHHHHHHhcC
Confidence 46899999999999999999764
No 452
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=91.54 E-value=1.6 Score=47.04 Aligned_cols=160 Identities=10% Similarity=0.036 Sum_probs=86.1
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccccchhhhhhhhccccCchhhHHHHHhHhHHHHHHHH
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKESDVIYRALSSRSHVDMLQTAELVHQSSTDAASSL 292 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~~~p~y~~l~~~G~~Dp~qaae~v~~eAtrlA~~l 292 (513)
..|++|++-|.-||||+|.++.|... ....+..++.+ ..|.+.+.... + +.+.
T Consensus 298 ~~~vlIvfEG~DaAGKg~~Ik~l~~~--ldprg~~V~~~-------~~Pt~~E~~~~--y----------------l~R~ 350 (500)
T 3czp_A 298 QHSLVAVFEGNDAAGKGGAIRRVTDA--LDPRQYHIVPI-------AAPTEEERAQP--Y----------------LWRF 350 (500)
T ss_dssp GCEEEEEEEESTTSCHHHHHHHHHTT--SCGGGCEEEEC-------CSCCHHHHTSC--T----------------THHH
T ss_pred CCCEEEEEeccCCCCHHHHHHHHHHh--cCccCCeEEEe-------CCCChhhhcch--H----------------HHHH
Confidence 47999999999999999999999886 21111111111 11222111110 0 0111
Q ss_pred HHHHHHCCCcEEEECcCCChHHHHHHHHHHhhhhhcccccccccccccCCccccchhhhhhhhhhhhcccCCCCeEEEEE
Q 044777 293 LVTALNEGRDVIMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENYWDRIGEREQAQDGKMRKPYRIELV 372 (513)
Q Consensus 293 i~~aL~~GrsVIlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Yw~~v~~a~~~~~~~~~~gYrI~Lv 372 (513)
....=..|.-+|+|-+.-+.-.+..+. |+- ..+.|-.+++..+.=++.....|+.+.-+
T Consensus 351 ~~~lP~~G~i~IfDRswY~~~~v~rv~---------------g~~------~~~~~~~~~~~i~~FE~~L~~~g~~i~Kf 409 (500)
T 3czp_A 351 WRHIPARRQFTIFDRSWYGRVLVERIE---------------GFC------APADWLRAYGEINDFEEQLSEYGIIVVKF 409 (500)
T ss_dssp HTTCCCTTCEEEEESCGGGGGTHHHHH---------------TSS------CHHHHHHHHHHHHHHHHHHHHHTEEEEEE
T ss_pred HHhCCCCCeEEEEeCcchhhHHHHHHh---------------cCC------CHHHHHHHHHHHHHHHHHHhhCCCeEEEE
Confidence 122225799999997765543322221 110 11111112222111111124578887778
Q ss_pred EEecChHHHHHHHHHHHHhcCC---cCchhHH-HHHHHHHHHHHHHhhcccc
Q 044777 373 GVVCDAYLAVVRGIRRAIMCRR---AVRVKSQ-LKSHKRFANAFLTYCQLVD 420 (513)
Q Consensus 373 ~V~~dpelAv~Rv~~Rv~~gGh---~VP~~~i-l~r~~rf~~nf~~~~~lvD 420 (513)
+...+++....|...|...-.. .-|.+.. +..|..+......++...|
T Consensus 410 ~L~is~eeQ~~R~~~R~~~p~k~Wk~s~~D~~~~~~w~~y~~a~~~~l~~T~ 461 (500)
T 3czp_A 410 WLAIDKQTQMERFKEREKTPYKRYKITEEDWRNRDKWDQYVDAVGDMVDRTS 461 (500)
T ss_dssp EEECCHHHHHHHHHHHHHSSCTTSCCCSSTTTGGGGHHHHHHHHHHHHHHHC
T ss_pred EEECCHHHHHHHHHHHhcCCcccCCCCHHHHHHHHhHHHHHHHHHHHHHHhc
Confidence 8899999999999999664222 2232322 4666677777666665444
No 453
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=91.53 E-value=0.12 Score=47.98 Aligned_cols=40 Identities=18% Similarity=0.343 Sum_probs=31.5
Q ss_pred cEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
+++.+.++..|+||||++-.|+.. +...+..+.+||.|.-
T Consensus 3 ~~i~v~s~kgGvGKTt~a~~LA~~--la~~g~~VlliD~D~~ 42 (237)
T 1g3q_A 3 RIISIVSGKGGTGKTTVTANLSVA--LGDRGRKVLAVDGDLT 42 (237)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHH--HHHTTCCEEEEECCTT
T ss_pred eEEEEecCCCCCCHHHHHHHHHHH--HHhcCCeEEEEeCCCC
Confidence 456677888999999999998765 4445668889999974
No 454
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=91.53 E-value=0.072 Score=54.75 Aligned_cols=37 Identities=14% Similarity=0.195 Sum_probs=28.0
Q ss_pred EEEEecCCCCchHHHHHHHhcCccccc--CCCCeEEecccc
Q 044777 217 LLFMGGGMGAGKSTVLKDILKEPFWAG--AAGNAVVIEADA 255 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~~f~~~--~~~~aVvInaDe 255 (513)
+++++|+||+||||++-+++.. ... .+..+++|++..
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~--~~~~g~g~~vlyId~E~ 68 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSS--YMRQYPDAVCLFYDSEF 68 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH--HHHHCTTCEEEEEESSC
T ss_pred eEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEeccc
Confidence 6899999999999998888654 111 145678888764
No 455
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=91.52 E-value=0.099 Score=46.17 Aligned_cols=25 Identities=24% Similarity=0.449 Sum_probs=21.7
Q ss_pred cEEEEEecCCCCchHHHHHHHhcCc
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKEP 239 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~~ 239 (513)
+.-|++.|.+|+||||+++.+....
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 4568899999999999999998763
No 456
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=91.50 E-value=0.1 Score=46.85 Aligned_cols=25 Identities=16% Similarity=0.262 Sum_probs=21.3
Q ss_pred cEEEEEecCCCCchHHHHHHHhcCc
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKEP 239 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~~ 239 (513)
..=|++.|.+|+||||+++.+....
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 3457889999999999999998764
No 457
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=91.49 E-value=0.12 Score=46.41 Aligned_cols=27 Identities=33% Similarity=0.334 Sum_probs=22.3
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEP 239 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~ 239 (513)
.+..=|++.|.+|+||||+++.+....
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCC
Confidence 345678999999999999999998753
No 458
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=91.45 E-value=0.21 Score=50.80 Aligned_cols=39 Identities=23% Similarity=0.273 Sum_probs=29.9
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEAD 254 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaD 254 (513)
.+++.+++|-.|.||||++-.|+.. +...+..+.+||.|
T Consensus 143 ~kvIav~s~KGGvGKTT~a~nLA~~--La~~g~rVlliD~D 181 (373)
T 3fkq_A 143 SSVVIFTSPCGGVGTSTVAAACAIA--HANMGKKVFYLNIE 181 (373)
T ss_dssp CEEEEEECSSTTSSHHHHHHHHHHH--HHHHTCCEEEEECC
T ss_pred ceEEEEECCCCCChHHHHHHHHHHH--HHhCCCCEEEEECC
Confidence 4456666779999999999988764 33345688999999
No 459
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=91.43 E-value=0.14 Score=49.84 Aligned_cols=39 Identities=13% Similarity=0.200 Sum_probs=28.9
Q ss_pred cEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccc
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADA 255 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDe 255 (513)
..-+++.|++|+||||++-.++.. ....+..+++++.|.
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~--l~~~G~~V~v~d~D~ 44 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHA--QLRQGVRVMAGVVET 44 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHH--HHHTTCCEEEEECCC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHH--HHHCCCCEEEEEeCC
Confidence 345899999999999998777654 223355777788875
No 460
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=91.41 E-value=0.1 Score=47.37 Aligned_cols=28 Identities=18% Similarity=0.188 Sum_probs=23.0
Q ss_pred CCCcEEEEEecCCCCchHHHHHHHhcCc
Q 044777 212 DRSPVLLFMGGGMGAGKSTVLKDILKEP 239 (513)
Q Consensus 212 ~~~P~LILmaG~pGAGKSTla~~Ll~~~ 239 (513)
...+.-|+|.|.+|+||||+++.+....
T Consensus 26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 26 YDFLFKLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred cccceEEEEECcCCCCHHHHHHHHhhCC
Confidence 3445678999999999999999998753
No 461
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=91.39 E-value=0.096 Score=52.26 Aligned_cols=25 Identities=36% Similarity=0.426 Sum_probs=22.0
Q ss_pred CcEEEEE--ecCCCCchHHHHHHHhcC
Q 044777 214 SPVLLFM--GGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 214 ~P~LILm--aG~pGAGKSTla~~Ll~~ 238 (513)
.|..++| .|++|+||||+++.+...
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~ 75 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKR 75 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHH
Confidence 5678888 999999999999999765
No 462
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=91.35 E-value=0.12 Score=46.47 Aligned_cols=27 Identities=22% Similarity=0.400 Sum_probs=22.0
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEP 239 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~ 239 (513)
..+.=|+|.|.+|+||||+++.+....
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCC
Confidence 456678899999999999999998763
No 463
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=91.33 E-value=0.13 Score=50.26 Aligned_cols=36 Identities=31% Similarity=0.412 Sum_probs=26.8
Q ss_pred EEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEec-cccccc
Q 044777 216 VLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIE-ADAFKE 258 (513)
Q Consensus 216 ~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvIn-aDefR~ 258 (513)
.+|.++|++||||||+++.|... .++.++. +|.+++
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~-------~g~~~~~~~~~~~~ 38 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSN-------YSAVKYQLAGPIKD 38 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH-------SCEEECCTTHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh-------cCCeEEecChHHHH
Confidence 47889999999999999999874 2455554 345543
No 464
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=91.30 E-value=0.12 Score=45.84 Aligned_cols=26 Identities=19% Similarity=0.262 Sum_probs=21.9
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEP 239 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~ 239 (513)
.+.=+++.|.+|+||||+.+.+....
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCC
Confidence 44567889999999999999998763
No 465
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=91.29 E-value=0.12 Score=46.90 Aligned_cols=26 Identities=27% Similarity=0.309 Sum_probs=21.9
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEP 239 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~ 239 (513)
...=|+|.|.+|+||||+.+.+....
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCSC
T ss_pred eeEEEEEECcCCCCHHHHHHHHhcCC
Confidence 34568889999999999999998763
No 466
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=91.28 E-value=0.11 Score=52.00 Aligned_cols=27 Identities=15% Similarity=0.238 Sum_probs=23.5
Q ss_pred CCCcEEEEEecCCCCchHHHHHHHhcC
Q 044777 212 DRSPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 212 ~~~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
.+-|..+++.|++|+||||+++.+++.
T Consensus 21 ~~~~~a~L~~G~~G~GKt~~a~~la~~ 47 (334)
T 1a5t_A 21 GRGHHALLIQALPGMGDDALIYALSRY 47 (334)
T ss_dssp TCCCSEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcceeEEEECCCCchHHHHHHHHHHH
Confidence 345778999999999999999999875
No 467
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.22 E-value=0.15 Score=45.22 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=21.8
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcC
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
++.-+++.|.+|+||||+.+.+...
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 4567889999999999999999865
No 468
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=91.21 E-value=0.087 Score=55.45 Aligned_cols=21 Identities=19% Similarity=0.415 Sum_probs=18.8
Q ss_pred EEEecCCCCchHHHHHHHhcC
Q 044777 218 LFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 218 ILmaG~pGAGKSTla~~Ll~~ 238 (513)
+++.|+||+||||+++.++..
T Consensus 204 ~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 204 PVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp EEEESCTTTTTHHHHHHHHHH
T ss_pred eEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999875
No 469
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=91.10 E-value=0.12 Score=55.73 Aligned_cols=41 Identities=22% Similarity=0.365 Sum_probs=33.2
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADA 255 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDe 255 (513)
..+++++++|.+|.||||++-.++.. +...+..+.+|++|-
T Consensus 6 ~~~~i~~~sgkGGvGKTT~a~~lA~~--lA~~G~rVLlvd~D~ 46 (589)
T 1ihu_A 6 NIPPYLFFTGKGGVGKTSISCATAIR--LAEQGKRVLLVSTDP 46 (589)
T ss_dssp SCCSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEECCT
T ss_pred CCCEEEEEeCCCcCHHHHHHHHHHHH--HHHCCCcEEEEECCC
Confidence 35678899999999999999988765 344567888999994
No 470
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=91.10 E-value=0.1 Score=60.13 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=20.1
Q ss_pred CcEEEEEecCCCCchHHHHHHH
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDI 235 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~L 235 (513)
...+++|.|||||||||+.+.+
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 4579999999999999999988
No 471
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=91.09 E-value=0.13 Score=44.88 Aligned_cols=25 Identities=16% Similarity=0.129 Sum_probs=21.1
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcC
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
++.=+++.|.+|+||||+...+...
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3455788999999999999999875
No 472
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=91.07 E-value=0.12 Score=46.85 Aligned_cols=25 Identities=28% Similarity=0.258 Sum_probs=21.0
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcC
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
++.-+++.|.+|+||||+.+++...
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3445789999999999999999764
No 473
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=91.06 E-value=0.14 Score=48.41 Aligned_cols=40 Identities=20% Similarity=0.315 Sum_probs=31.8
Q ss_pred cEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
+++.++++-.|+||||++-.|+.. +...+..+.+||.|.-
T Consensus 3 ~~I~v~s~kgGvGKTt~a~~LA~~--la~~g~~VlliD~D~~ 42 (263)
T 1hyq_A 3 RTITVASGKGGTGKTTITANLGVA--LAQLGHDVTIVDADIT 42 (263)
T ss_dssp EEEEEEESSSCSCHHHHHHHHHHH--HHHTTCCEEEEECCCS
T ss_pred eEEEEECCCCCCCHHHHHHHHHHH--HHhCCCcEEEEECCCC
Confidence 456777899999999999998765 4445668889999974
No 474
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=91.02 E-value=0.14 Score=49.29 Aligned_cols=23 Identities=17% Similarity=0.264 Sum_probs=20.3
Q ss_pred EEEEEecCCCCchHHHHHHHhcC
Q 044777 216 VLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 216 ~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
.-+.+.|.||+||||+.+.|...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 45788999999999999999865
No 475
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=91.02 E-value=0.16 Score=48.62 Aligned_cols=42 Identities=26% Similarity=0.340 Sum_probs=32.7
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFK 257 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR 257 (513)
..++.++.|-.|+||||++-.|+.. +...+..+.+||.|.-.
T Consensus 18 ~~vI~v~s~kGGvGKTT~a~nLA~~--la~~G~~VlliD~D~~~ 59 (262)
T 2ph1_A 18 KSRIAVMSGKGGVGKSTVTALLAVH--YARQGKKVGILDADFLG 59 (262)
T ss_dssp SCEEEEECSSSCTTHHHHHHHHHHH--HHHTTCCEEEEECCSSC
T ss_pred CeEEEEEcCCCCCCHHHHHHHHHHH--HHHCCCeEEEEeCCCCC
Confidence 4567778889999999999988765 44445688899999764
No 476
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=91.01 E-value=0.26 Score=50.45 Aligned_cols=22 Identities=14% Similarity=0.209 Sum_probs=20.0
Q ss_pred EEEEecCCCCchHHHHHHHhcC
Q 044777 217 LLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~ 238 (513)
.+.+.|.|||||||+.+.|...
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~ 202 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGL 202 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5789999999999999999875
No 477
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=91.01 E-value=0.082 Score=60.84 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=20.9
Q ss_pred CCcEEEEEecCCCCchHHHHHHHh
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDIL 236 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll 236 (513)
....+++|.|||||||||+.+.+.
T Consensus 671 ~~g~i~~ItGPNGaGKSTlLr~i~ 694 (918)
T 3thx_B 671 DSERVMIITGPNMGGKSSYIKQVA 694 (918)
T ss_dssp TSCCEEEEESCCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCchHHHHHHHH
Confidence 345799999999999999999875
No 478
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=90.97 E-value=0.11 Score=53.06 Aligned_cols=25 Identities=32% Similarity=0.254 Sum_probs=21.9
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcC
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
+...+.+-|+|||||||+.+.|+..
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568889999999999999999875
No 479
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=90.97 E-value=0.12 Score=46.37 Aligned_cols=26 Identities=19% Similarity=0.417 Sum_probs=21.8
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEP 239 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~ 239 (513)
++.=|++.|.+|+||||+++.+....
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHCC
T ss_pred CceEEEEECcCCCCHHHHHHHHhcCC
Confidence 34567889999999999999998753
No 480
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=90.95 E-value=0.14 Score=48.12 Aligned_cols=40 Identities=25% Similarity=0.281 Sum_probs=31.8
Q ss_pred cEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
+++.+.++-.|+||||++-.|+.. +...+..+.+||.|.-
T Consensus 3 ~vi~v~s~kgGvGKTt~a~~LA~~--la~~g~~VlliD~D~~ 42 (260)
T 3q9l_A 3 RIIVVTSGKGGVGKTTSSAAIATG--LAQKGKKTVVIDFAIG 42 (260)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHH--HHHTTCCEEEEECCCS
T ss_pred eEEEEECCCCCCcHHHHHHHHHHH--HHhCCCcEEEEECCCC
Confidence 456677888999999999988775 4445678899999973
No 481
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=90.91 E-value=0.11 Score=46.76 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=21.8
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEP 239 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~ 239 (513)
.+.=|++.|.+|+||||++..+....
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCC
Confidence 34567889999999999999998753
No 482
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=90.90 E-value=0.15 Score=48.42 Aligned_cols=38 Identities=21% Similarity=0.254 Sum_probs=29.4
Q ss_pred EEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 217 LLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
+|.+.|-.|+||||++-.|+.. +...+..+.+||.|--
T Consensus 3 vI~vs~KGGvGKTT~a~nLA~~--la~~G~~VlliD~D~q 40 (269)
T 1cp2_A 3 QVAIYGKGGIGKSTTTQNLTSG--LHAMGKTIMVVGCDPK 40 (269)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH--HHTTTCCEEEEEECTT
T ss_pred EEEEecCCCCcHHHHHHHHHHH--HHHCCCcEEEEcCCCC
Confidence 3444799999999999988765 4445678889999964
No 483
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=90.89 E-value=0.14 Score=47.16 Aligned_cols=26 Identities=19% Similarity=0.262 Sum_probs=22.4
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEP 239 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~ 239 (513)
.+.=+++.|.+|+||||+++.+....
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 45678899999999999999998763
No 484
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=90.89 E-value=0.1 Score=48.13 Aligned_cols=35 Identities=26% Similarity=0.382 Sum_probs=28.7
Q ss_pred EEecCCCCchHHHHHHHhcCcccccCCCCeEEecccc
Q 044777 219 FMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADA 255 (513)
Q Consensus 219 LmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDe 255 (513)
.+.|-.|+||||++-.|+.. +...+..+.+||.|-
T Consensus 4 ~vs~kGGvGKTt~a~~LA~~--la~~g~~VlliD~D~ 38 (254)
T 3kjh_A 4 AVAGKGGVGKTTVAAGLIKI--MASDYDKIYAVDGDP 38 (254)
T ss_dssp EEECSSSHHHHHHHHHHHHH--HTTTCSCEEEEEECT
T ss_pred EEecCCCCCHHHHHHHHHHH--HHHCCCeEEEEeCCC
Confidence 33899999999999999775 445567888999997
No 485
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=90.89 E-value=0.14 Score=48.92 Aligned_cols=27 Identities=37% Similarity=0.423 Sum_probs=22.6
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEP 239 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~ 239 (513)
..+.-|+|.|.+|+||||+++.|+...
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSC
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCC
Confidence 455678999999999999999998763
No 486
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=90.86 E-value=0.17 Score=55.97 Aligned_cols=24 Identities=17% Similarity=0.253 Sum_probs=20.2
Q ss_pred cEEEEEecCCCCchHHHHHHHhcC
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
+.-+++.|+||+||||+++.++..
T Consensus 207 ~~~vlL~G~~GtGKT~la~~la~~ 230 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHHHHHHH
Confidence 334688999999999999999764
No 487
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.85 E-value=0.15 Score=45.89 Aligned_cols=27 Identities=26% Similarity=0.437 Sum_probs=21.5
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEP 239 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~ 239 (513)
..+.-|++.|.+|+||||++..+....
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCC
Confidence 345668889999999999999998653
No 488
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=90.85 E-value=0.12 Score=46.58 Aligned_cols=24 Identities=29% Similarity=0.281 Sum_probs=20.4
Q ss_pred cEEEEEecCCCCchHHHHHHHhcC
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
+.-+++.|.+|+||||+.+++...
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 446788999999999999999875
No 489
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=90.80 E-value=0.14 Score=48.79 Aligned_cols=40 Identities=18% Similarity=0.180 Sum_probs=31.5
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
.+++.+..|-.|+||||++-.|+.. +. .+..+.+||.|--
T Consensus 27 ~~vI~v~s~kGGvGKTT~a~~LA~~--la-~g~~VlliD~D~~ 66 (267)
T 3k9g_A 27 PKIITIASIKGGVGKSTSAIILATL--LS-KNNKVLLIDMDTQ 66 (267)
T ss_dssp CEEEEECCSSSSSCHHHHHHHHHHH--HT-TTSCEEEEEECTT
T ss_pred CeEEEEEeCCCCchHHHHHHHHHHH--HH-CCCCEEEEECCCC
Confidence 4556677889999999999988875 44 4678889999964
No 490
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=90.77 E-value=0.15 Score=46.83 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=21.7
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcC
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
.++.=|++.|.+|+||||+++.+...
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcC
Confidence 34567889999999999999999865
No 491
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=90.77 E-value=0.19 Score=49.66 Aligned_cols=42 Identities=19% Similarity=0.258 Sum_probs=33.3
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFK 257 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR 257 (513)
.+++.+.++.+|.||||++..|+.. +.+.+..+++||+|.-+
T Consensus 92 ~kvI~vts~kgG~GKTtva~nLA~~--lA~~G~rVLLID~D~~~ 133 (286)
T 3la6_A 92 NNVLMMTGVSPSIGMTFVCANLAAV--ISQTNKRVLLIDCDMRK 133 (286)
T ss_dssp CCEEEEEESSSSSSHHHHHHHHHHH--HHTTTCCEEEEECCTTT
T ss_pred CeEEEEECCCCCCcHHHHHHHHHHH--HHhCCCCEEEEeccCCC
Confidence 4567777778999999999988765 44556788999999865
No 492
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=90.76 E-value=0.17 Score=45.01 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=21.6
Q ss_pred cEEEEEecCCCCchHHHHHHHhcCc
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKEP 239 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~~ 239 (513)
+.=+++.|.+|+||||+.+.+....
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC
Confidence 4567889999999999999998763
No 493
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=90.74 E-value=0.088 Score=48.00 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=20.6
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcC
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
.+.-|++.|.+|+||||+++.|...
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3445677899999999999999876
No 494
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=90.74 E-value=0.11 Score=54.61 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=19.7
Q ss_pred EEEecCCCCchHHHHHHHhcCc
Q 044777 218 LFMGGGMGAGKSTVLKDILKEP 239 (513)
Q Consensus 218 ILmaG~pGAGKSTla~~Ll~~~ 239 (513)
+.+.|+|||||||+++.|....
T Consensus 34 I~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTCC
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 5899999999999999998753
No 495
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=90.73 E-value=0.13 Score=50.84 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=21.8
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcC
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
++..+.+.|.||+||||+.+.|...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3447899999999999999999875
No 496
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=90.69 E-value=0.16 Score=51.91 Aligned_cols=39 Identities=28% Similarity=0.427 Sum_probs=32.1
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccc--cCCCCeEEeccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWA--GAAGNAVVIEAD 254 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~--~~~~~aVvInaD 254 (513)
.++++++.|..|.||||++..++.. +. ..+..+.+|++|
T Consensus 17 ~~~i~~~~gkGGvGKTt~a~~lA~~--la~~~~g~~vllid~D 57 (348)
T 3io3_A 17 SLKWIFVGGKGGVGKTTTSSSVAVQ--LALAQPNEQFLLISTD 57 (348)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHHH--HHHHCTTSCEEEEECC
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHH--HHHhcCCCeEEEEECC
Confidence 4578999999999999999988754 33 456788899999
No 497
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.63 E-value=0.13 Score=46.00 Aligned_cols=24 Identities=21% Similarity=0.283 Sum_probs=20.9
Q ss_pred cEEEEEecCCCCchHHHHHHHhcC
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
..=|++.|.+|+||||+.+.+...
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eeEEEEECCCCcCHHHHHHHHhcC
Confidence 345788999999999999999875
No 498
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=90.59 E-value=0.17 Score=45.38 Aligned_cols=26 Identities=15% Similarity=0.189 Sum_probs=20.6
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcC
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
..+.=|++.|.+|+||||+.+.+...
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhC
Confidence 34566888999999999999999865
No 499
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=90.54 E-value=0.051 Score=52.46 Aligned_cols=22 Identities=36% Similarity=0.622 Sum_probs=18.8
Q ss_pred EEEEecCCCCchHHHHHHHhcC
Q 044777 217 LLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~ 238 (513)
++.|.|||||||||+.+.+..-
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~ 50 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTA 50 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4567899999999999998754
No 500
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=90.54 E-value=0.14 Score=45.07 Aligned_cols=24 Identities=29% Similarity=0.181 Sum_probs=19.8
Q ss_pred cEEEEEecCCCCchHHHHHHHhcC
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
..=|++.|.+|+||||+.+.+...
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~ 37 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSK 37 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHHhh
Confidence 455789999999999999877654
Done!