BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>044778
MEAIKKQAIKHREQVAKQQQAVLKHLLHLGIENIAVHEAEIECHQQL

High Scoring Gene Products

Symbol, full name Information P value
AT1G31440 protein from Arabidopsis thaliana 4.0e-10
AT4G34660 protein from Arabidopsis thaliana 0.00013
AT4G18060 protein from Arabidopsis thaliana 0.00054

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  044778
        (47 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2206174 - symbol:AT1G31440 species:3702 "Arabi...   152  4.0e-10   1
TAIR|locus:2139554 - symbol:AT4G34660 "AT4G34660" species...   100  0.00013   1
TAIR|locus:2117666 - symbol:AT4G18060 "AT4G18060" species...    94  0.00054   1


>TAIR|locus:2206174 [details] [associations]
            symbol:AT1G31440 species:3702 "Arabidopsis thaliana"
            [GO:0005634 "nucleus" evidence=ISM] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0012505 "endomembrane system" evidence=IDA]
            [GO:0030276 "clathrin binding" evidence=IDA] [GO:0005886 "plasma
            membrane" evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
            Pfam:PF00018 InterPro:IPR001452 PROSITE:PS50002 SMART:SM00326
            EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005886
            SUPFAM:SSF50044 EMBL:AC027135 HSSP:Q9NZM3 HOGENOM:HOG000242335
            ProtClustDB:CLSN2682385 EMBL:AF367773 EMBL:AY080835 EMBL:AY113984
            IPI:IPI00529482 PIR:D86440 RefSeq:NP_174429.1 UniGene:At.27356
            ProteinModelPortal:Q9C865 SMR:Q9C865 STRING:Q9C865 PaxDb:Q9C865
            PRIDE:Q9C865 EnsemblPlants:AT1G31440.1 GeneID:840034
            KEGG:ath:AT1G31440 TAIR:At1g31440 eggNOG:NOG322106
            InParanoid:Q9C865 OMA:NGWSEGE PhylomeDB:Q9C865 ArrayExpress:Q9C865
            Genevestigator:Q9C865 Uniprot:Q9C865
        Length = 439

 Score = 152 (58.6 bits), Expect = 4.0e-10, P = 4.0e-10
 Identities = 30/47 (63%), Positives = 37/47 (78%)

Query:     1 MEAIKKQAIKHREQVAKQQQAVLKHLLHLGIENIAVHEAEIECHQQL 47
             MEAI+KQA K REQVA+QQQAVLKHL H+  + + V E E+ CHQ+L
Sbjct:     1 MEAIRKQAAKLREQVARQQQAVLKHLGHVNADAVVVDEEELHCHQKL 47


>TAIR|locus:2139554 [details] [associations]
            symbol:AT4G34660 "AT4G34660" species:3702 "Arabidopsis
            thaliana" [GO:0008150 "biological_process" evidence=ND] [GO:0030276
            "clathrin binding" evidence=ISS] [GO:0005829 "cytosol"
            evidence=IDA] Pfam:PF00018 InterPro:IPR001452 PROSITE:PS50002
            SMART:SM00326 GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR
            SUPFAM:SSF50044 HOGENOM:HOG000242335 ProtClustDB:CLSN2682385
            EMBL:AF367774 EMBL:AY072132 EMBL:AY096478 EMBL:AY087158
            IPI:IPI00532988 RefSeq:NP_567969.1 UniGene:At.2311
            ProteinModelPortal:Q8VWF1 SMR:Q8VWF1 IntAct:Q8VWF1 PRIDE:Q8VWF1
            EnsemblPlants:AT4G34660.1 GeneID:829618 KEGG:ath:AT4G34660
            TAIR:At4g34660 InParanoid:Q8VWF1 OMA:SERAYHQ PhylomeDB:Q8VWF1
            Genevestigator:Q8VWF1 Uniprot:Q8VWF1
        Length = 368

 Score = 100 (40.3 bits), Expect = 0.00013, P = 0.00013
 Identities = 24/47 (51%), Positives = 31/47 (65%)

Query:     1 MEAIKKQAIKHREQVAKQQQAVLKHLLHLGIENIAVHEAEIECHQQL 47
             M+AI+KQA + REQVA+QQQAV K     G  +    EAE+  HQ+L
Sbjct:     1 MDAIRKQASRLREQVARQQQAVFKQFGGGGYGSGLADEAELNQHQKL 47


>TAIR|locus:2117666 [details] [associations]
            symbol:AT4G18060 "AT4G18060" species:3702 "Arabidopsis
            thaliana" [GO:0030276 "clathrin binding" evidence=ISS] [GO:0000023
            "maltose metabolic process" evidence=RCA] [GO:0006084 "acetyl-CoA
            metabolic process" evidence=RCA] [GO:0007020 "microtubule
            nucleation" evidence=RCA] [GO:0016126 "sterol biosynthetic process"
            evidence=RCA] [GO:0016132 "brassinosteroid biosynthetic process"
            evidence=RCA] [GO:0019252 "starch biosynthetic process"
            evidence=RCA] [GO:0043085 "positive regulation of catalytic
            activity" evidence=RCA] Pfam:PF00018 InterPro:IPR001452
            PROSITE:PS50002 SMART:SM00326 EMBL:CP002687
            GenomeReviews:CT486007_GR InterPro:IPR000108 PRINTS:PR00499
            SUPFAM:SSF50044 HSSP:Q9NZM3 EMBL:AY125505 EMBL:BT002255
            IPI:IPI00523087 RefSeq:NP_193540.3 UniGene:At.27424
            ProteinModelPortal:Q8L7W0 SMR:Q8L7W0 PaxDb:Q8L7W0 PRIDE:Q8L7W0
            EnsemblPlants:AT4G18060.1 GeneID:827531 KEGG:ath:AT4G18060
            TAIR:At4g18060 eggNOG:NOG236267 HOGENOM:HOG000242335
            InParanoid:Q8L7W0 OMA:YGDARKH PhylomeDB:Q8L7W0
            ProtClustDB:CLSN2682385 Genevestigator:Q8L7W0 Uniprot:Q8L7W0
        Length = 351

 Score = 94 (38.1 bits), Expect = 0.00054, P = 0.00054
 Identities = 22/50 (44%), Positives = 32/50 (64%)

Query:     1 MEAIKKQAIKHREQVAKQQQAVLKHLLHLGIEN---IAVHEAEIECHQQL 47
             M+A ++QA K R+QVAKQQ AV+K     G E+   + + E E++ H QL
Sbjct:     1 MDAFRRQASKLRDQVAKQQLAVIKQFSGTGYESSDVMVIDELEMQRHHQL 50


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.129   0.351    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       47        47   0.00091  102 3  10 22  0.41    26
                                                     29  0.47    25


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  407 (43 KB)
  Total size of DFA:  83 KB (2067 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.42u 0.11s 9.53t   Elapsed:  00:00:01
  Total cpu time:  9.42u 0.11s 9.53t   Elapsed:  00:00:01
  Start:  Fri May 10 09:33:08 2013   End:  Fri May 10 09:33:09 2013

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