Query 044778
Match_columns 47
No_of_seqs 34 out of 36
Neff 2.5
Searched_HMMs 46136
Date Fri Mar 29 06:40:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044778.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044778hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA02652 hypothetical protein; 53.3 7 0.00015 23.5 0.8 15 30-44 52-66 (70)
2 COG1382 GimC Prefoldin, chaper 49.8 48 0.001 21.2 4.3 26 2-27 87-112 (119)
3 PF07820 TraC: TraC-like prote 49.6 63 0.0014 20.2 5.2 15 29-43 36-50 (92)
4 PHA02053 hypothetical protein 38.9 23 0.00049 23.1 1.6 35 3-38 29-67 (115)
5 PF10454 DUF2458: Protein of u 37.4 95 0.0021 20.0 4.3 33 8-40 99-133 (150)
6 PF01591 6PF2K: 6-phosphofruct 36.8 63 0.0014 21.8 3.6 32 6-37 70-102 (222)
7 PF02286 Dehydratase_LU: Dehyd 36.0 55 0.0012 26.1 3.5 22 7-28 407-428 (554)
8 PF12107 VEK-30: Plasminogen ( 35.9 20 0.00044 16.6 0.8 7 37-43 1-7 (17)
9 PRK13848 conjugal transfer pro 33.9 1.3E+02 0.0028 19.2 5.1 38 6-43 3-51 (98)
10 PF13086 AAA_11: AAA domain; P 33.7 10 0.00023 22.3 -0.5 11 30-40 192-202 (236)
11 cd03687 Dehydratase_LU Dehydra 33.4 55 0.0012 26.0 3.2 22 7-28 400-421 (545)
12 PF14974 DUF4511: Domain of un 33.1 40 0.00087 21.2 2.0 17 19-35 53-70 (105)
13 PRK15444 pduC propanediol dehy 32.6 58 0.0013 26.0 3.2 22 7-28 407-428 (554)
14 PF08103 Antimicrobial_8: Uper 31.5 51 0.0011 15.3 1.7 11 2-12 4-14 (17)
15 COG1157 FliI Flagellar biosynt 31.0 92 0.002 24.1 4.0 35 5-39 371-407 (441)
16 COG5394 Uncharacterized protei 30.5 46 0.001 23.4 2.1 18 1-18 104-121 (193)
17 PF08356 EF_assoc_2: EF hand a 28.9 29 0.00063 21.0 0.9 9 20-28 51-59 (89)
18 PF13939 TisB_toxin: Toxin Tis 28.8 71 0.0015 16.4 2.2 16 11-26 11-28 (28)
19 cd08031 LARP_4_5_like La RNA-b 28.3 39 0.00085 19.7 1.3 20 20-39 2-22 (75)
20 PF14164 YqzH: YqzH-like prote 28.1 89 0.0019 18.3 2.8 26 15-40 6-32 (64)
21 KOG3208 SNARE protein GS28 [In 28.0 54 0.0012 23.5 2.2 17 2-18 8-24 (231)
22 COG1938 Archaeal enzymes of AT 27.9 1.2E+02 0.0027 21.4 3.9 25 2-26 207-231 (244)
23 COG5385 Uncharacterized protei 27.8 76 0.0017 22.6 2.9 36 1-42 50-87 (214)
24 PF13030 DUF3891: Protein of u 27.7 1.2E+02 0.0025 20.4 3.6 34 6-46 119-152 (221)
25 COG4659 RnfG Predicted NADH:ub 26.8 76 0.0016 22.2 2.7 20 8-27 30-49 (195)
26 KOG3478 Prefoldin subunit 6, K 25.8 1E+02 0.0022 20.3 3.0 18 4-21 95-112 (120)
27 PF08823 PG_binding_2: Putativ 25.6 80 0.0017 18.2 2.3 28 13-40 15-43 (74)
28 cd08034 LARP_1_2 La RNA-bindin 24.7 48 0.001 19.2 1.2 20 20-39 2-22 (73)
29 PF14810 TGT_C2: Patch-forming 23.9 13 0.00027 21.6 -1.3 17 25-41 11-27 (74)
30 PF09006 Surfac_D-trimer: Lung 23.5 1.5E+02 0.0032 16.5 4.0 23 2-24 2-24 (46)
31 COG1842 PspA Phage shock prote 23.3 2.3E+02 0.0049 19.4 4.5 27 5-31 135-161 (225)
32 PF06014 DUF910: Bacterial pro 22.4 42 0.00091 19.5 0.7 8 20-27 8-15 (62)
33 cd00046 DEXDc DEAD-like helica 22.1 28 0.00061 18.1 -0.1 12 30-41 103-114 (144)
34 KOG1655 Protein involved in va 22.0 1.1E+02 0.0024 21.9 2.8 12 28-42 153-164 (218)
35 PF06141 Phage_tail_U: Phage m 21.6 43 0.00093 21.7 0.7 34 8-41 4-38 (133)
36 KOG0976 Rho/Rac1-interacting s 21.1 63 0.0014 27.9 1.7 19 1-19 244-262 (1265)
37 PF13304 AAA_21: AAA domain; P 20.5 10 0.00022 21.2 -2.1 14 32-45 259-272 (303)
38 PF13856 Gifsy-2: ATP-binding 20.3 1.1E+02 0.0023 17.6 2.1 33 10-42 3-41 (95)
39 COG3937 Uncharacterized conser 20.3 1.3E+02 0.0028 19.3 2.6 19 1-19 85-103 (108)
No 1
>PHA02652 hypothetical protein; Provisional
Probab=53.28 E-value=7 Score=23.51 Aligned_cols=15 Identities=20% Similarity=0.339 Sum_probs=12.1
Q ss_pred CcchhhcchHHHHhh
Q 044778 30 GIENIAVHEAEIECH 44 (47)
Q Consensus 30 ~~d~~v~DE~Elq~H 44 (47)
--|.+..||+|||+-
T Consensus 52 llddllfdeaelqql 66 (70)
T PHA02652 52 LLDDLLFDEAELQQL 66 (70)
T ss_pred HHHHHhcCHHHHHHh
Confidence 457788999999873
No 2
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=49.79 E-value=48 Score=21.24 Aligned_cols=26 Identities=27% Similarity=0.318 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044778 2 EAIKKQAIKHREQVAKQQQAVLKHLL 27 (47)
Q Consensus 2 dairKqAsklreqVAkQqQAVlKqf~ 27 (47)
+.|.||-+++++++.+-|.++.+-||
T Consensus 87 ~tLekQe~~l~e~l~eLq~~i~~~l~ 112 (119)
T COG1382 87 KTLEKQEEKLQERLEELQSEIQKALG 112 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 57899999999999999999999998
No 3
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=49.57 E-value=63 Score=20.16 Aligned_cols=15 Identities=27% Similarity=0.643 Sum_probs=11.3
Q ss_pred cCcchhhcchHHHHh
Q 044778 29 LGIENIAVHEAEIEC 43 (47)
Q Consensus 29 ~~~d~~v~DE~Elq~ 43 (47)
.|--.|-|||+||+.
T Consensus 36 aGL~eieI~d~eL~~ 50 (92)
T PF07820_consen 36 AGLGEIEISDAELQA 50 (92)
T ss_pred cccccccCCHHHHHH
Confidence 366678889999864
No 4
>PHA02053 hypothetical protein
Probab=38.86 E-value=23 Score=23.14 Aligned_cols=35 Identities=23% Similarity=0.290 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHhhcCcchhhcch
Q 044778 3 AIKKQAIKHREQVAKQQ----QAVLKHLLHLGIENIAVHE 38 (47)
Q Consensus 3 airKqAsklreqVAkQq----QAVlKqf~~~~~d~~v~DE 38 (47)
-|++-|||+++|=.--+ --+||-| ..++|++=+|-
T Consensus 29 iIe~Ya~k~~~~~ts~kllns~MilK~l-i~sGddmP~D~ 67 (115)
T PHA02053 29 IIEKYASKTKQQDTSNKLLNSLMILKLL-IASGDDMPIDA 67 (115)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHH-HHcCCCCCCCC
Confidence 37888999998877766 5788888 55788887775
No 5
>PF10454 DUF2458: Protein of unknown function (DUF2458); InterPro: IPR018858 This entry represents a family of uncharacterised proteins.
Probab=37.37 E-value=95 Score=20.01 Aligned_cols=33 Identities=33% Similarity=0.262 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHh--hcCcchhhcchHH
Q 044778 8 AIKHREQVAKQQQAVLKHLL--HLGIENIAVHEAE 40 (47)
Q Consensus 8 AsklreqVAkQqQAVlKqf~--~~~~d~~v~DE~E 40 (47)
+-+--.+.++.|++.|+-|| +.+.++.+.||..
T Consensus 99 V~~a~~~m~~~~~~~L~~LgVPfF~~~~~~~~~el 133 (150)
T PF10454_consen 99 VYKASKQMSKEQQAELKELGVPFFYIKEDISDEEL 133 (150)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCeeeCCCCCCcHHH
Confidence 33344567788999999999 5567776666654
No 6
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=36.78 E-value=63 Score=21.81 Aligned_cols=32 Identities=28% Similarity=0.327 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHhhcCcchhhcc
Q 044778 6 KQAIKHREQVAKQ-QQAVLKHLLHLGIENIAVH 37 (47)
Q Consensus 6 KqAsklreqVAkQ-qQAVlKqf~~~~~d~~v~D 37 (47)
..|.++|+++|+- -+.++.-|-..+++..|.|
T Consensus 70 ~~~~~~R~~~a~~~l~dl~~~l~~~~G~VAI~D 102 (222)
T PF01591_consen 70 EEAKKLREQIAKEALEDLIEWLQEEGGQVAIFD 102 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTS--SEEEEE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 5788999999987 5556666655677777776
No 7
>PF02286 Dehydratase_LU: Dehydratase large subunit; InterPro: IPR003206 This entry represents the large subunit of adenosylcobalamin-dependent diol dehydratases (4.2.1.28 from EC) and glycerol dehydratases (4.2.1.30 from EC). These enzymes are produced by some enterobacteria in response to growth substances. The enzyme have an TIM beta/alpha barrel fold []. Inactivated holoenzymes are reactivated by their own reactivating factors that mediate the ATP-dependent exchange of an enzyme-bound, damaged cofactor for free adenosylcobalamin through intermediary formation of apoenzyme. The reactivation takes place in two steps: (a) ADP-dependent cobalamin release and (b) ATP-dependent dissociation of the resulting apoenzyme-reactivating factor complexes [].; GO: 0016836 hydro-lyase activity, 0031419 cobalamin binding, 0050215 propanediol dehydratase activity, 0006071 glycerol metabolic process, 0008152 metabolic process; PDB: 1MMF_A 1IWP_A 1UC4_A 1IWB_L 1EGM_L 1EGV_A 3AUJ_L 1DIO_L 1UC5_A 1EEX_L ....
Probab=35.95 E-value=55 Score=26.08 Aligned_cols=22 Identities=36% Similarity=0.386 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 044778 7 QAIKHREQVAKQQQAVLKHLLH 28 (47)
Q Consensus 7 qAsklreqVAkQqQAVlKqf~~ 28 (47)
..-+.|..-||--||||+.+|.
T Consensus 407 ~vi~vRnkAara~QavF~eLGl 428 (554)
T PF02286_consen 407 EVIAVRNKAARAIQAVFKELGL 428 (554)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHHHHcCC
Confidence 4567888899999999999983
No 8
>PF12107 VEK-30: Plasminogen (Pg) ligand in fibrinolytic pathway; InterPro: IPR021965 Pg is an important mediator of angiostatin production in the fibrinolytic pathway. Pg is made up of five subunit kringle molecules (Pg-K1 to Pg-K5), of which the first three make the protein angiostatin. VEK-30 is a domain of the group A streptococcal protein PAM. It binds to Pg-K2 of angiostatin and activates the molecule to mediate its anti-angiogenic effects. VEK-30 binds to angiostatin via a C-terminal lysine with argininyl and glutamyl side chain residues known as a 'through space isostere' [].; PDB: 2KJ4_B 2DOI_B 2DOH_C 1I5K_D.
Probab=35.92 E-value=20 Score=16.62 Aligned_cols=7 Identities=57% Similarity=0.677 Sum_probs=5.5
Q ss_pred chHHHHh
Q 044778 37 HEAEIEC 43 (47)
Q Consensus 37 DE~Elq~ 43 (47)
||+||+|
T Consensus 1 ~~aeLer 7 (17)
T PF12107_consen 1 DEAELER 7 (17)
T ss_dssp HHHHHHH
T ss_pred ChHHHHH
Confidence 6888876
No 9
>PRK13848 conjugal transfer protein TraC; Provisional
Probab=33.85 E-value=1.3e+02 Score=19.19 Aligned_cols=38 Identities=34% Similarity=0.498 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHH----HHHH---HHh----hcCcchhhcchHHHHh
Q 044778 6 KQAIKHREQVAKQQQ----AVLK---HLL----HLGIENIAVHEAEIEC 43 (47)
Q Consensus 6 KqAsklreqVAkQqQ----AVlK---qf~----~~~~d~~v~DE~Elq~ 43 (47)
|-.|++|+|++|-|. ++-| .|| -.|--.+=|||+||+.
T Consensus 3 k~~s~I~~eI~kLqe~lk~~e~keAERigRiAlKAGLgeieI~d~eL~~ 51 (98)
T PRK13848 3 KPSSKIREEIAKLQEQLKQAETREAERIGRIALKAGLGEIEIEEAELQA 51 (98)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCHHHHHH
Confidence 445666666666542 2222 345 2344557788888874
No 10
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=33.72 E-value=10 Score=22.30 Aligned_cols=11 Identities=27% Similarity=0.386 Sum_probs=7.5
Q ss_pred CcchhhcchHH
Q 044778 30 GIENIAVHEAE 40 (47)
Q Consensus 30 ~~d~~v~DE~E 40 (47)
.-|.||+|||-
T Consensus 192 ~~d~vIvDEAs 202 (236)
T PF13086_consen 192 KFDVVIVDEAS 202 (236)
T ss_dssp --SEEEETTGG
T ss_pred cCCEEEEeCCC
Confidence 57889999973
No 11
>cd03687 Dehydratase_LU Dehydratase large subunit. This family contains the large (alpha) subunit of B12-dependent glycerol dehydratases (GDHs) and B12-dependent diol dehydratases (DDHs). GDH is isofunctional with DDH. These enzymes can each catalyze the conversion of 1,2-propanediol, glycerol, and 1,2-ethanediol to the corresponding aldehydes via a coenzyme B12 (adenosylcobalamin)-dependent radical mechanism. Both enzymes exhibit a subunit composition of alpha2beta2gamma2. The enzymes differ in substrate specificity; glycerol is the preferred substrate for GDH and 1,2-propanediol for DDH. GDH shows almost equal affinity for both (R) and (S)-isomers while DDH prefers the (S) isomer. GDH plays a key role in the dihydroxyacetone (DHA) pathway and DDH in the anaerobic degradation of 1,2-diols. The radical mechanism has been well studied for Klebsiella oxytoca DDH and involves binding of 1,2-propanediol to the enzyme to induce hemolytic cleavage of the Co-C5' bond of the coenzyme to form co
Probab=33.40 E-value=55 Score=26.04 Aligned_cols=22 Identities=32% Similarity=0.379 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 044778 7 QAIKHREQVAKQQQAVLKHLLH 28 (47)
Q Consensus 7 qAsklreqVAkQqQAVlKqf~~ 28 (47)
..-+.|..-||--||||+.+|.
T Consensus 400 ~viavRnkAA~AiQAVf~~LGl 421 (545)
T cd03687 400 EVIAVRNKAARAIQAVFRELGL 421 (545)
T ss_pred HHHHHHHHHHHHHHHHHHhcCC
Confidence 4567888899999999999983
No 12
>PF14974 DUF4511: Domain of unknown function (DUF4511)
Probab=33.10 E-value=40 Score=21.25 Aligned_cols=17 Identities=24% Similarity=0.174 Sum_probs=12.7
Q ss_pred HHHHHHHHhh-cCcchhh
Q 044778 19 QQAVLKHLLH-LGIENIA 35 (47)
Q Consensus 19 qQAVlKqf~~-~~~d~~v 35 (47)
|.-|+|-||+ ++.+.++
T Consensus 53 q~~VIk~yGF~~~~eG~~ 70 (105)
T PF14974_consen 53 QMEVIKKYGFPESREGVM 70 (105)
T ss_pred HHHHHHHcCCCCCcchHH
Confidence 7899999995 4555554
No 13
>PRK15444 pduC propanediol dehydratase large subunit; Provisional
Probab=32.57 E-value=58 Score=25.96 Aligned_cols=22 Identities=32% Similarity=0.383 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 044778 7 QAIKHREQVAKQQQAVLKHLLH 28 (47)
Q Consensus 7 qAsklreqVAkQqQAVlKqf~~ 28 (47)
..-+.|..-||--||||+.+|.
T Consensus 407 ~vi~vRnkAArAiQAVF~~LGl 428 (554)
T PRK15444 407 EVIAVRNKAARALQAVFRELGL 428 (554)
T ss_pred HHHHHHHHHHHHHHHHHHhcCC
Confidence 3567888889999999999983
No 14
>PF08103 Antimicrobial_8: Uperin family; InterPro: IPR012527 This family consists of the uperin family of antimicrobial peptides. Uperin is a wide-spectrum antibiotic peptide isolated from the Australian toadlet, Uperoleia mjobergii. Being only 17 amino acid residues long, it is smaller than most other wide-spectrum antibiotic peptides isolated from amphibians. Uperin adopts a well-defined amphipathic alpha-helix with distinct hydrophilic and hydrophobic faces [].; GO: 0005576 extracellular region
Probab=31.54 E-value=51 Score=15.26 Aligned_cols=11 Identities=27% Similarity=0.311 Sum_probs=8.6
Q ss_pred hHHHHHHHHHH
Q 044778 2 EAIKKQAIKHR 12 (47)
Q Consensus 2 dairKqAsklr 12 (47)
|+|||-+|-.+
T Consensus 4 d~~rKivs~iK 14 (17)
T PF08103_consen 4 DAIRKIVSVIK 14 (17)
T ss_pred HHHHHHHHHHH
Confidence 78999888654
No 15
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=31.01 E-value=92 Score=24.07 Aligned_cols=35 Identities=14% Similarity=0.124 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHh-hcCcchhhcchH
Q 044778 5 KKQAIKHREQVAKQQQ-AVLKHLL-HLGIENIAVHEA 39 (47)
Q Consensus 5 rKqAsklreqVAkQqQ-AVlKqf~-~~~~d~~v~DE~ 39 (47)
|+.|+++|+=+++-+. ..|-..| |-.+.+-.+|+|
T Consensus 371 ~~~a~~~r~lls~y~e~edLi~iGaY~~G~D~~~D~A 407 (441)
T COG1157 371 RKAARRLRQLLSRYEENEDLIRIGAYQKGSDPELDKA 407 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCccCCCCHHHHHH
Confidence 7899999999999865 5788889 764444667775
No 16
>COG5394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.46 E-value=46 Score=23.35 Aligned_cols=18 Identities=39% Similarity=0.495 Sum_probs=15.0
Q ss_pred ChHHHHHHHHHHHHHHHH
Q 044778 1 MEAIKKQAIKHREQVAKQ 18 (47)
Q Consensus 1 MdairKqAsklreqVAkQ 18 (47)
|.|+-++-|+||||.++-
T Consensus 104 mqaF~~qQs~lreq~~~~ 121 (193)
T COG5394 104 MQAFSDQQSRLREQMKKA 121 (193)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 578889999999998764
No 17
>PF08356 EF_assoc_2: EF hand associated; InterPro: IPR013567 This region predominantly appears near EF-hands (IPR002048 from INTERPRO) in GTP-binding proteins. It is found in all three eukaryotic kingdoms.
Probab=28.92 E-value=29 Score=21.01 Aligned_cols=9 Identities=22% Similarity=0.150 Sum_probs=7.9
Q ss_pred HHHHHHHhh
Q 044778 20 QAVLKHLLH 28 (47)
Q Consensus 20 QAVlKqf~~ 28 (47)
-.||+.|||
T Consensus 51 W~vLR~FgY 59 (89)
T PF08356_consen 51 WTVLRKFGY 59 (89)
T ss_pred HHHHHHcCC
Confidence 489999998
No 18
>PF13939 TisB_toxin: Toxin TisB, type I toxin-antitoxin system
Probab=28.76 E-value=71 Score=16.36 Aligned_cols=16 Identities=44% Similarity=0.314 Sum_probs=9.8
Q ss_pred HHHHHHHHH--HHHHHHH
Q 044778 11 HREQVAKQQ--QAVLKHL 26 (47)
Q Consensus 11 lreqVAkQq--QAVlKqf 26 (47)
|+.-||--| -||||+|
T Consensus 11 lkl~va~lqlldavlk~~ 28 (28)
T PF13939_consen 11 LKLIVAVLQLLDAVLKYF 28 (28)
T ss_pred HHHHHHHHHHHHHHHhhC
Confidence 344455554 3899886
No 19
>cd08031 LARP_4_5_like La RNA-binding domain of proteins similar to La-related proteins 4 and 5. This domain is found in proteins similar to La-related proteins 4 and 5 (LARP4, LARP5). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=28.35 E-value=39 Score=19.66 Aligned_cols=20 Identities=20% Similarity=0.197 Sum_probs=15.9
Q ss_pred HHHHHHHh-hcCcchhhcchH
Q 044778 20 QAVLKHLL-HLGIENIAVHEA 39 (47)
Q Consensus 20 QAVlKqf~-~~~~d~~v~DE~ 39 (47)
+++.||.- |.|.+|+..|.-
T Consensus 2 ~~i~~QvEfYFSd~NL~~D~f 22 (75)
T cd08031 2 ELLKRQLEYYFSRENLANDAY 22 (75)
T ss_pred hHHHHHHHHHcCHhhhccCHH
Confidence 36788888 778889998864
No 20
>PF14164 YqzH: YqzH-like protein
Probab=28.07 E-value=89 Score=18.30 Aligned_cols=26 Identities=15% Similarity=-0.014 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHhhc-CcchhhcchHH
Q 044778 15 VAKQQQAVLKHLLHL-GIENIAVHEAE 40 (47)
Q Consensus 15 VAkQqQAVlKqf~~~-~~d~~v~DE~E 40 (47)
+-|.-+..|+|||+. .++++-.+|-+
T Consensus 6 I~Kmi~~~l~QYg~d~~~~pls~~E~~ 32 (64)
T PF14164_consen 6 IEKMIINCLRQYGYDVECMPLSDEEWE 32 (64)
T ss_pred HHHHHHHHHHHhCCcccCCCCCHHHHH
Confidence 346667799999964 56666555543
No 21
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.02 E-value=54 Score=23.47 Aligned_cols=17 Identities=35% Similarity=0.446 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHHHHH
Q 044778 2 EAIKKQAIKHREQVAKQ 18 (47)
Q Consensus 2 dairKqAsklreqVAkQ 18 (47)
|+|||||.++--|..-.
T Consensus 8 e~LRkqArslE~~ld~k 24 (231)
T KOG3208|consen 8 EALRKQARSLENQLDSK 24 (231)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 79999999998776544
No 22
>COG1938 Archaeal enzymes of ATP-grasp superfamily [General function prediction only]
Probab=27.88 E-value=1.2e+02 Score=21.42 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 044778 2 EAIKKQAIKHREQVAKQQQAVLKHL 26 (47)
Q Consensus 2 dairKqAsklreqVAkQqQAVlKqf 26 (47)
|.|.|+|+.+++|+-|-=+.+.++-
T Consensus 207 d~L~keAe~i~~~lekl~eq~~~~~ 231 (244)
T COG1938 207 DKLEKEAEEIEEQLEKLAEQLEKEE 231 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888887776644444443
No 23
>COG5385 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.84 E-value=76 Score=22.57 Aligned_cols=36 Identities=25% Similarity=0.286 Sum_probs=22.9
Q ss_pred ChHHHHHHHHH--HHHHHHHHHHHHHHHhhcCcchhhcchHHHH
Q 044778 1 MEAIKKQAIKH--REQVAKQQQAVLKHLLHLGIENIAVHEAEIE 42 (47)
Q Consensus 1 MdairKqAskl--reqVAkQqQAVlKqf~~~~~d~~v~DE~Elq 42 (47)
|+-||.+|.+. |.|+|+- -||..+|-.+-+|--|++
T Consensus 50 m~LIrsSArnas~rLqFaR~------AFGAsgSag~~iDtgeae 87 (214)
T COG5385 50 MDLIRSSARNASVRLQFARL------AFGASGSAGASIDTGEAE 87 (214)
T ss_pred HHHHHHHhhhHHHHHHHHHH------HhcccccccccccchhHH
Confidence 67788877664 5555554 477556666667765554
No 24
>PF13030 DUF3891: Protein of unknown function (DUF3891)
Probab=27.66 E-value=1.2e+02 Score=20.44 Aligned_cols=34 Identities=15% Similarity=0.122 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCcchhhcchHHHHhhhc
Q 044778 6 KQAIKHREQVAKQQQAVLKHLLHLGIENIAVHEAEIECHQQ 46 (47)
Q Consensus 6 KqAsklreqVAkQqQAVlKqf~~~~~d~~v~DE~Elq~HQ~ 46 (47)
+....|-++-...|+.+++++|.. ++.++++|-+
T Consensus 119 ~~~~~Fl~~e~~rQ~~l~~~L~~~-------~~~~~~~~y~ 152 (221)
T PF13030_consen 119 PEVDAFLDEEEQRQERLRAELGID-------DKEELERHYR 152 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCc-------cHHHHHHHHH
Confidence 445556666666688999999743 6788887754
No 25
>COG4659 RnfG Predicted NADH:ubiquinone oxidoreductase, subunit RnfG [Energy production and conversion]
Probab=26.84 E-value=76 Score=22.19 Aligned_cols=20 Identities=50% Similarity=0.527 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 044778 8 AIKHREQVAKQQQAVLKHLL 27 (47)
Q Consensus 8 AsklreqVAkQqQAVlKqf~ 27 (47)
.+++-|+-++||.+.||+.=
T Consensus 30 k~~I~e~~~~q~~~al~eVl 49 (195)
T COG4659 30 KAKIAEQAAKQQKEALKEVL 49 (195)
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 36788999999999999987
No 26
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=25.83 E-value=1e+02 Score=20.31 Aligned_cols=18 Identities=44% Similarity=0.410 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 044778 4 IKKQAIKHREQVAKQQQA 21 (47)
Q Consensus 4 irKqAsklreqVAkQqQA 21 (47)
+-+.++|.|+.|++-|++
T Consensus 95 ~q~e~~k~R~~v~k~Q~~ 112 (120)
T KOG3478|consen 95 SQEEFEKQREAVIKLQQA 112 (120)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 347889999999998875
No 27
>PF08823 PG_binding_2: Putative peptidoglycan binding domain; InterPro: IPR014927 This entry may be a peptidoglycan binding domain.
Probab=25.58 E-value=80 Score=18.15 Aligned_cols=28 Identities=32% Similarity=0.266 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHhhc-CcchhhcchHH
Q 044778 13 EQVAKQQQAVLKHLLHL-GIENIAVHEAE 40 (47)
Q Consensus 13 eqVAkQqQAVlKqf~~~-~~d~~v~DE~E 40 (47)
.-+++.-|+.|+.+||. +.-.-..||+-
T Consensus 15 ~~~~~evq~~L~~lGyy~g~~~g~~d~a~ 43 (74)
T PF08823_consen 15 GDVAREVQEALKRLGYYKGEADGVWDEAT 43 (74)
T ss_pred HHHHHHHHHHHHHcCCccCCCCCcccHHH
Confidence 45788889999999953 33334456653
No 28
>cd08034 LARP_1_2 La RNA-binding domain proteins similar to La-related proteins 1 and 2. This domain is found in proteins similar to vertebrate La-related proteins 1 and 2 (LARP1, LARP2). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=24.67 E-value=48 Score=19.25 Aligned_cols=20 Identities=10% Similarity=0.169 Sum_probs=15.8
Q ss_pred HHHHHHHh-hcCcchhhcchH
Q 044778 20 QAVLKHLL-HLGIENIAVHEA 39 (47)
Q Consensus 20 QAVlKqf~-~~~~d~~v~DE~ 39 (47)
++|.+|.- |.|.+|+..|.-
T Consensus 2 ~~i~~QvEfYFSd~NL~~D~f 22 (73)
T cd08034 2 EYIKKQIEYYFSVDNLEKDFF 22 (73)
T ss_pred hHHHhhHHhhcCHhhhccCHH
Confidence 36788888 778889988864
No 29
>PF14810 TGT_C2: Patch-forming domain C2 of tRNA-guanine transglycosylase; PDB: 1J2B_A 1IT8_A 1IT7_B 1IQ8_A.
Probab=23.90 E-value=13 Score=21.60 Aligned_cols=17 Identities=12% Similarity=0.042 Sum_probs=10.6
Q ss_pred HHhhcCcchhhcchHHH
Q 044778 25 HLLHLGIENIAVHEAEI 41 (47)
Q Consensus 25 qf~~~~~d~~v~DE~El 41 (47)
|||.|.+|.++-|+.++
T Consensus 11 QFG~gag~~lf~d~~~i 27 (74)
T PF14810_consen 11 QFGRGAGDALFPDDIEI 27 (74)
T ss_dssp HT-TTGGGGTTT---EE
T ss_pred HcCcChHHHhcccCcEE
Confidence 89988889888887544
No 30
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=23.52 E-value=1.5e+02 Score=16.52 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 044778 2 EAIKKQAIKHREQVAKQQQAVLK 24 (47)
Q Consensus 2 dairKqAsklreqVAkQqQAVlK 24 (47)
+|+|.|-+.|..||-.-|-++.+
T Consensus 2 ~aLrqQv~aL~~qv~~Lq~~fs~ 24 (46)
T PF09006_consen 2 NALRQQVEALQGQVQRLQAAFSQ 24 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999888877665543
No 31
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=23.33 E-value=2.3e+02 Score=19.39 Aligned_cols=27 Identities=37% Similarity=0.325 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCc
Q 044778 5 KKQAIKHREQVAKQQQAVLKHLLHLGI 31 (47)
Q Consensus 5 rKqAsklreqVAkQqQAVlKqf~~~~~ 31 (47)
++.+-+.|.+.++-|..|-+.+|.+++
T Consensus 135 ~~~~l~ar~~~akA~~~v~~~~~~~s~ 161 (225)
T COG1842 135 KKEALKARKAAAKAQEKVNRSLGGGSS 161 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 356677888899999999999986554
No 32
>PF06014 DUF910: Bacterial protein of unknown function (DUF910); InterPro: IPR009256 This family consists of several short bacterial proteins of unknown function.; PDB: 2NN4_A.
Probab=22.36 E-value=42 Score=19.48 Aligned_cols=8 Identities=38% Similarity=0.405 Sum_probs=6.7
Q ss_pred HHHHHHHh
Q 044778 20 QAVLKHLL 27 (47)
Q Consensus 20 QAVlKqf~ 27 (47)
|..||+||
T Consensus 8 qQLLK~fG 15 (62)
T PF06014_consen 8 QQLLKKFG 15 (62)
T ss_dssp HHHHHTTS
T ss_pred HHHHHHCC
Confidence 46899999
No 33
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=22.15 E-value=28 Score=18.06 Aligned_cols=12 Identities=17% Similarity=0.268 Sum_probs=9.2
Q ss_pred CcchhhcchHHH
Q 044778 30 GIENIAVHEAEI 41 (47)
Q Consensus 30 ~~d~~v~DE~El 41 (47)
..+.+|+||+..
T Consensus 103 ~~~~iiiDE~h~ 114 (144)
T cd00046 103 KLDLLILDEAHR 114 (144)
T ss_pred cCCEEEEeCHHH
Confidence 567799999753
No 34
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.99 E-value=1.1e+02 Score=21.87 Aligned_cols=12 Identities=17% Similarity=0.321 Sum_probs=9.1
Q ss_pred hcCcchhhcchHHHH
Q 044778 28 HLGIENIAVHEAEIE 42 (47)
Q Consensus 28 ~~~~d~~v~DE~Elq 42 (47)
|+..| +||++|.
T Consensus 153 y~~pe---ide~dL~ 164 (218)
T KOG1655|consen 153 YNTPD---IDEADLD 164 (218)
T ss_pred cCCCC---cCHHHHH
Confidence 76666 8998874
No 35
>PF06141 Phage_tail_U: Phage minor tail protein U; InterPro: IPR009312 This entry is represented by Bacteriophage lambda, GpU, a minor tail protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a tail fibre component U of bacteriophage.; PDB: 3FZ2_D 3FZB_J 1Z1Z_A.
Probab=21.65 E-value=43 Score=21.70 Aligned_cols=34 Identities=15% Similarity=0.206 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHh-hcCcchhhcchHHH
Q 044778 8 AIKHREQVAKQQQAVLKHLL-HLGIENIAVHEAEI 41 (47)
Q Consensus 8 AsklreqVAkQqQAVlKqf~-~~~~d~~v~DE~El 41 (47)
-+++|..|.--=++.+.-=+ ..++-+.++||.||
T Consensus 4 ht~IR~aVld~L~~~~~~~~~~fdGrP~fide~el 38 (133)
T PF06141_consen 4 HTQIRKAVLDALKANIPEIVTFFDGRPAFIDEEEL 38 (133)
T ss_dssp HHHHHHHHHHHHHHH-STSSEEEES--SSS-GGGS
T ss_pred HHHHHHHHHHHHHhcCCCCeEEECCcccccccccC
Confidence 45666666654333332212 35788899998775
No 36
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=21.12 E-value=63 Score=27.89 Aligned_cols=19 Identities=21% Similarity=0.204 Sum_probs=16.3
Q ss_pred ChHHHHHHHHHHHHHHHHH
Q 044778 1 MEAIKKQAIKHREQVAKQQ 19 (47)
Q Consensus 1 MdairKqAsklreqVAkQq 19 (47)
|.|+||-||+++||+---|
T Consensus 244 ltp~rk~~s~i~E~d~~lq 262 (1265)
T KOG0976|consen 244 LTPLRKTCSMIEEQDMDLQ 262 (1265)
T ss_pred hhhHhhhhHHHHHHHHHHH
Confidence 6899999999999986553
No 37
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=20.55 E-value=10 Score=21.19 Aligned_cols=14 Identities=21% Similarity=0.285 Sum_probs=11.5
Q ss_pred chhhcchHHHHhhh
Q 044778 32 ENIAVHEAEIECHQ 45 (47)
Q Consensus 32 d~~v~DE~Elq~HQ 45 (47)
..+++||.|..-|-
T Consensus 259 ~illiDEpE~~LHp 272 (303)
T PF13304_consen 259 SILLIDEPENHLHP 272 (303)
T ss_dssp SEEEEESSSTTSSH
T ss_pred eEEEecCCcCCCCH
Confidence 66999999987774
No 38
>PF13856 Gifsy-2: ATP-binding sugar transporter from pro-phage; PDB: 2PP6_A.
Probab=20.34 E-value=1.1e+02 Score=17.56 Aligned_cols=33 Identities=21% Similarity=0.265 Sum_probs=18.7
Q ss_pred HHHHHHHHH-HHHHHHHHh----hcCcc-hhhcchHHHH
Q 044778 10 KHREQVAKQ-QQAVLKHLL----HLGIE-NIAVHEAEIE 42 (47)
Q Consensus 10 klreqVAkQ-qQAVlKqf~----~~~~d-~~v~DE~Elq 42 (47)
-++|+++.. ..+++..|| ..|.+ ..|.||.+++
T Consensus 3 ~~fd~~~~d~D~~~~~~fg~~~~InG~~~~~v~d~~~~~ 41 (95)
T PF13856_consen 3 SFFDQLAADIDAVILDEFGEEHTINGKPYRAVFDEPELE 41 (95)
T ss_dssp HHHHHHHHHHHHHHHHHH-EEEEETTEEEEEEEGGGT--
T ss_pred CHHHHHHHHHHHHHHHHhCCeEEECCEEEEEEECCchhh
Confidence 355666666 557778999 22322 3778887654
No 39
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=20.25 E-value=1.3e+02 Score=19.30 Aligned_cols=19 Identities=21% Similarity=0.291 Sum_probs=15.0
Q ss_pred ChHHHHHHHHHHHHHHHHH
Q 044778 1 MEAIKKQAIKHREQVAKQQ 19 (47)
Q Consensus 1 MdairKqAsklreqVAkQq 19 (47)
|++++-.-..|++||++-+
T Consensus 85 ~~~l~~rvd~Lerqv~~Le 103 (108)
T COG3937 85 MDELTERVDALERQVADLE 103 (108)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6778888888999988753
Done!