Query 044778
Match_columns 47
No_of_seqs 34 out of 36
Neff 2.5
Searched_HMMs 29240
Date Mon Mar 25 11:26:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044778.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044778hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v62_C ATP-dependent DNA helic 73.7 0.39 1.3E-05 28.1 -1.0 37 1-37 22-69 (69)
2 1eex_A Propanediol dehydratase 36.9 24 0.00081 27.0 2.8 22 7-28 407-428 (554)
3 4glx_A DNA ligase; inhibitor, 35.4 31 0.0011 25.5 3.1 33 1-39 1-34 (586)
4 1a93_B MAX protein, coiled coi 32.4 27 0.00092 17.7 1.8 14 2-15 17-30 (34)
5 4aj5_1 SKA3, spindle and kinet 25.1 36 0.0012 20.7 1.7 13 1-13 1-13 (101)
6 3iz5_K 60S ribosomal protein L 24.9 28 0.00097 23.0 1.3 10 19-28 197-206 (206)
7 2a3d_A Protein (de novo three- 23.8 58 0.002 18.8 2.3 15 1-15 53-67 (73)
8 2nn4_A Hypothetical protein YQ 23.8 27 0.00094 20.0 0.9 8 20-27 9-16 (72)
9 1ybx_A Conserved hypothetical 22.0 1.2E+02 0.004 18.8 3.7 23 1-23 43-65 (143)
10 3um3_B Charged multivesicular 20.8 1.1E+02 0.0036 18.1 3.2 32 8-42 12-45 (104)
11 1j8b_A YBAB; hypothetical prot 20.7 94 0.0032 18.1 2.9 22 1-22 10-31 (112)
12 2z5i_I TM, tropomyosin alpha-1 20.7 81 0.0028 16.0 2.3 12 1-12 5-16 (40)
13 2xgj_A ATP-dependent RNA helic 20.3 1.4E+02 0.0047 22.8 4.3 23 21-43 824-846 (1010)
No 1
>3v62_C ATP-dependent DNA helicase SRS2, proliferating cell nuclear antigen; ubiquitin-like protein PCNA; HET: MLY; 2.90A {Saccharomyces cerevisiae}
Probab=73.66 E-value=0.39 Score=28.14 Aligned_cols=37 Identities=22% Similarity=0.234 Sum_probs=11.2
Q ss_pred ChHHHHHHHHHHHHHHHH----HHHHHHHHh-------hcCcchhhcc
Q 044778 1 MEAIKKQAIKHREQVAKQ----QQAVLKHLL-------HLGIENIAVH 37 (47)
Q Consensus 1 MdairKqAsklreqVAkQ----qQAVlKqf~-------~~~~d~~v~D 37 (47)
+||+||..++.+.-|-+- |--+|-|++ ...++.+|+|
T Consensus 22 ADA~rk~~~~~~~kvKke~~~~q~DIfsqLsrAkKkak~n~~eiIviD 69 (69)
T 3v62_C 22 ADAAMKKTQKFSKKVKNEPASSQMDIFSQLSRAKKKSKLNNGEIIVID 69 (69)
T ss_dssp ---------------------CBCCHHHHHHHHHC------CCEEECC
T ss_pred HHHHhccccccccccccCCCcchhhHHHHHHHHHhccCCCCCceEeeC
Confidence 589999999988887764 667888888 2245556665
No 2
>1eex_A Propanediol dehydratase; coenzyme B12, potassium ION, TIM barrel, lyase; HET: COY; 1.70A {Klebsiella oxytoca} SCOP: c.1.19.3 PDB: 1dio_A* 1egm_A* 1egv_A* 1iwb_A* 1uc4_A* 1uc5_A* 3auj_A* 1iwp_A* 1mmf_A*
Probab=36.92 E-value=24 Score=26.98 Aligned_cols=22 Identities=27% Similarity=0.276 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 044778 7 QAIKHREQVAKQQQAVLKHLLH 28 (47)
Q Consensus 7 qAsklreqVAkQqQAVlKqf~~ 28 (47)
..-+.|..-||--||||+.+|.
T Consensus 407 ~vi~vRnkAarAiQavF~~LGl 428 (554)
T 1eex_A 407 DVIAIRNKAARALQAVFAGMGL 428 (554)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHhcCC
Confidence 3457888889999999999983
No 3
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=35.40 E-value=31 Score=25.49 Aligned_cols=33 Identities=15% Similarity=0.054 Sum_probs=23.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcchhhcchH
Q 044778 1 MEAIKKQAIKHREQVAKQQQAVLKHLLHL-GIENIAVHEA 39 (47)
Q Consensus 1 MdairKqAsklreqVAkQqQAVlKqf~~~-~~d~~v~DE~ 39 (47)
|+.++++...||+++.+--.+ |+ .+++.|.|+.
T Consensus 1 me~~~~~i~~L~~~i~~~~~~------Yy~~~~p~IsD~e 34 (586)
T 4glx_A 1 MESIEQQLTELRTTLRHHEYL------YHVMDAPEIPDAE 34 (586)
T ss_dssp --CHHHHHHHHHHHHHHHHHH------HHHTTCSSBCCTH
T ss_pred CchHHHHHHHHHHHHHHHHHH------HhcCCCCCCCHHH
Confidence 889999999999888765322 44 6778888874
No 4
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=32.45 E-value=27 Score=17.69 Aligned_cols=14 Identities=29% Similarity=0.404 Sum_probs=11.7
Q ss_pred hHHHHHHHHHHHHH
Q 044778 2 EAIKKQAIKHREQV 15 (47)
Q Consensus 2 dairKqAsklreqV 15 (47)
|-|++|-..|++||
T Consensus 17 ddlkrQN~~Le~Qi 30 (34)
T 1a93_B 17 DDLKRQNALLEQQV 30 (34)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 66888888898887
No 5
>4aj5_1 SKA3, spindle and kinetochore-associated protein 3; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=25.07 E-value=36 Score=20.69 Aligned_cols=13 Identities=31% Similarity=0.353 Sum_probs=10.3
Q ss_pred ChHHHHHHHHHHH
Q 044778 1 MEAIKKQAIKHRE 13 (47)
Q Consensus 1 MdairKqAsklre 13 (47)
||++|.=.+|||.
T Consensus 1 Md~~~~Ff~KLR~ 13 (101)
T 4aj5_1 1 MDPIRSFCGKLRS 13 (101)
T ss_dssp -CHHHHHHHHHHH
T ss_pred CChHHHHHHHHHH
Confidence 8899888888885
No 6
>3iz5_K 60S ribosomal protein L13A (L13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_K
Probab=24.89 E-value=28 Score=22.96 Aligned_cols=10 Identities=20% Similarity=0.175 Sum_probs=8.1
Q ss_pred HHHHHHHHhh
Q 044778 19 QQAVLKHLLH 28 (47)
Q Consensus 19 qQAVlKqf~~ 28 (47)
+++||++|||
T Consensus 197 ~~~~~~~~~y 206 (206)
T 3iz5_K 197 QLEILAPIKY 206 (206)
T ss_dssp SSTTHHHHTC
T ss_pred HHHHHhhccC
Confidence 6788888875
No 7
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=23.82 E-value=58 Score=18.82 Aligned_cols=15 Identities=33% Similarity=0.621 Sum_probs=12.6
Q ss_pred ChHHHHHHHHHHHHH
Q 044778 1 MEAIKKQAIKHREQV 15 (47)
Q Consensus 1 MdairKqAsklreqV 15 (47)
.+|+||.|..+|+.+
T Consensus 53 vealrkeaaairdel 67 (73)
T 2a3d_A 53 VEALRKEAAAIRDEL 67 (73)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 378999999999865
No 8
>2nn4_A Hypothetical protein YQGQ; novel fold, PFAM:DUF910, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.272.1.1
Probab=23.80 E-value=27 Score=19.96 Aligned_cols=8 Identities=38% Similarity=0.368 Sum_probs=6.8
Q ss_pred HHHHHHHh
Q 044778 20 QAVLKHLL 27 (47)
Q Consensus 20 QAVlKqf~ 27 (47)
|..||+||
T Consensus 9 qQLLK~fG 16 (72)
T 2nn4_A 9 QQLLKTFG 16 (72)
T ss_dssp HHHHHTTT
T ss_pred HHHHHHCC
Confidence 46899999
No 9
>1ybx_A Conserved hypothetical protein; ST genomics, PSI, protein structure initiative, southeast COLL for structural genomics, secsg; HET: MSE; 1.80A {Clostridium thermocellum}
Probab=22.02 E-value=1.2e+02 Score=18.84 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=18.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHH
Q 044778 1 MEAIKKQAIKHREQVAKQQQAVL 23 (47)
Q Consensus 1 MdairKqAsklreqVAkQqQAVl 23 (47)
|..+-|||.++.++.++-|..+=
T Consensus 43 m~~mmkQAQkmQ~km~k~QeeL~ 65 (143)
T 1ybx_A 43 INNLVKQAQKMQRDMERVQEELK 65 (143)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45678999999999998876543
No 10
>3um3_B Charged multivesicular BODY protein 4B; alpha-helix of C-terminal tail of CHMP4B, ESCRT-III, CHMPS, protein-transport protein complex, BROX; 3.80A {Homo sapiens}
Probab=20.79 E-value=1.1e+02 Score=18.06 Aligned_cols=32 Identities=13% Similarity=-0.074 Sum_probs=17.0
Q ss_pred HHHHHHHHHHH--HHHHHHHHhhcCcchhhcchHHHH
Q 044778 8 AIKHREQVAKQ--QQAVLKHLLHLGIENIAVHEAEIE 42 (47)
Q Consensus 8 AsklreqVAkQ--qQAVlKqf~~~~~d~~v~DE~Elq 42 (47)
-..++|+++.+ .+.+|-. +|+.++ -+||.||.
T Consensus 12 mDei~E~~e~~~EI~e~Ls~-~~~~~~--~~DEdELe 45 (104)
T 3um3_B 12 MQDIADQQELAEEISTAISK-PVGFGE--EFDEDELM 45 (104)
T ss_pred HHHHHHHHHHHHHHHHHHhc-ccCCCC--CCCHHHHH
Confidence 34577887776 3344432 132222 35887764
No 11
>1j8b_A YBAB; hypothetical protein, structural genomics, structure function project, S2F, unknown function; HET: MSE; 1.75A {Haemophilus influenzae RD} SCOP: d.222.1.1 PDB: 1pug_A
Probab=20.73 E-value=94 Score=18.10 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=17.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHH
Q 044778 1 MEAIKKQAIKHREQVAKQQQAV 22 (47)
Q Consensus 1 MdairKqAsklreqVAkQqQAV 22 (47)
|..+-|||.++.++.++-|..+
T Consensus 10 m~~mmkqaq~mQ~~m~~~QeeL 31 (112)
T 1j8b_A 10 LGGLMKQAQQMQEKMQKMQEEI 31 (112)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3457799999999999887653
No 12
>2z5i_I TM, tropomyosin alpha-1 chain and general control protein GCN4; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Oryctolagus cuniculus} PDB: 2z5h_I 2g9j_A 1tmz_A
Probab=20.70 E-value=81 Score=16.03 Aligned_cols=12 Identities=42% Similarity=0.504 Sum_probs=8.2
Q ss_pred ChHHHHHHHHHH
Q 044778 1 MEAIKKQAIKHR 12 (47)
Q Consensus 1 MdairKqAsklr 12 (47)
||||+|--..|+
T Consensus 5 MdAIKKKMq~lK 16 (40)
T 2z5i_I 5 MDAIKKKMQMLK 16 (40)
T ss_dssp CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 889988554444
No 13
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=20.34 E-value=1.4e+02 Score=22.82 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=17.5
Q ss_pred HHHHHHhhcCcchhhcchHHHHh
Q 044778 21 AVLKHLLHLGIENIAVHEAEIEC 43 (47)
Q Consensus 21 AVlKqf~~~~~d~~v~DE~Elq~ 43 (47)
.||+.|||-..+++|+.....-|
T Consensus 824 ~vL~~l~~~~~~~~v~~kGr~a~ 846 (1010)
T 2xgj_A 824 RVLRRLGFCTPNDIIELKGRVAC 846 (1010)
T ss_dssp HHHHHHTSBCTTCCBCHHHHHHH
T ss_pred HHHHhcCCcCCCCcccHHHHHHH
Confidence 89999999877777876655443
Done!