Query 044778
Match_columns 47
No_of_seqs 34 out of 36
Neff 2.5
Searched_HMMs 13730
Date Mon Mar 25 11:26:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044778.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/044778hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wvfa2 d.145.1.1 (A:7-242) Fl 48.4 7.9 0.00058 22.7 3.1 25 22-46 15-40 (236)
2 d1f0xa2 d.145.1.1 (A:9-273) D- 39.8 8.5 0.00062 23.4 2.3 26 20-45 2-28 (265)
3 d1zh5a1 a.4.5.46 (A:5-103) Lup 37.7 18 0.0013 19.6 3.3 26 14-39 5-31 (99)
4 d1usub_ d.83.2.1 (B:) Activato 33.2 36 0.0026 18.8 4.2 25 3-27 115-140 (142)
5 d1eexa_ c.1.19.3 (A:) Diol deh 24.8 30 0.0022 24.7 3.3 21 7-27 407-427 (551)
6 d2nn4a1 a.272.1.1 (A:1-62) Hyp 24.3 12 0.00086 19.7 0.8 8 20-27 8-15 (62)
7 d1b04a_ d.142.2.2 (A:) Adenyla 24.3 45 0.0033 20.1 3.7 30 4-39 5-35 (312)
8 d1yksa1 c.37.1.14 (A:185-324) 24.2 5.3 0.00039 19.5 -0.6 11 30-40 98-108 (140)
9 d1a1va1 c.37.1.14 (A:190-325) 23.7 5.5 0.0004 20.4 -0.6 10 30-39 94-103 (136)
10 d1dgsa3 d.142.2.2 (A:1-314) Ad 23.5 37 0.0027 20.6 3.2 31 3-39 5-36 (314)
11 d1nvma1 a.5.7.1 (A:291-341) 4- 21.8 19 0.0014 18.3 1.4 21 19-39 19-43 (51)
12 d1tbga_ b.69.4.1 (A:) beta1-su 21.2 54 0.004 16.8 3.5 18 2-19 5-22 (340)
No 1
>d1wvfa2 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]}
Probab=48.40 E-value=7.9 Score=22.67 Aligned_cols=25 Identities=16% Similarity=0.272 Sum_probs=18.3
Q ss_pred HHHHHh-hcCcchhhcchHHHHhhhc
Q 044778 22 VLKHLL-HLGIENIAVHEAEIECHQQ 46 (47)
Q Consensus 22 VlKqf~-~~~~d~~v~DE~Elq~HQ~ 46 (47)
++++|. .-|.++|++|+.++..|.+
T Consensus 15 ~v~~l~~ivG~~~V~~~~~~~~~y~~ 40 (236)
T d1wvfa2 15 AVQKFRALLGDDNVLVESDQLVPYNK 40 (236)
T ss_dssp HHHHHHHHHCGGGEECSHHHHHHHHC
T ss_pred HHHHHHHHcCCccEEECHHHHHHHhC
Confidence 345555 3478899999999988754
No 2
>d1f0xa2 d.145.1.1 (A:9-273) D-lactate dehydrogenase {Escherichia coli [TaxId: 562]}
Probab=39.77 E-value=8.5 Score=23.39 Aligned_cols=26 Identities=19% Similarity=0.254 Sum_probs=20.5
Q ss_pred HHHHHHHh-hcCcchhhcchHHHHhhh
Q 044778 20 QAVLKHLL-HLGIENIAVHEAEIECHQ 45 (47)
Q Consensus 20 QAVlKqf~-~~~~d~~v~DE~Elq~HQ 45 (47)
++.|+.+. .-+.++|++|+.++..|-
T Consensus 2 ~~ll~~L~~ivG~~~Vltd~~~~~~ys 28 (265)
T d1f0xa2 2 KAFLNELARLVGSSHLLTDPAKTARYR 28 (265)
T ss_dssp HHHHHHHHHHHCGGGEECCHHHHHHHH
T ss_pred HHHHHHHHHhcCcccEEeCHHHHHHhh
Confidence 46777777 458899999999998774
No 3
>d1zh5a1 a.4.5.46 (A:5-103) Lupus La autoantigen N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=37.73 E-value=18 Score=19.59 Aligned_cols=26 Identities=12% Similarity=0.142 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHh-hcCcchhhcchH
Q 044778 14 QVAKQQQAVLKHLL-HLGIENIAVHEA 39 (47)
Q Consensus 14 qVAkQqQAVlKqf~-~~~~d~~v~DE~ 39 (47)
..+.-.++|.||.- |.|.+|+..|--
T Consensus 5 ~~~~l~~~I~~QvEfYFSd~NL~~D~f 31 (99)
T d1zh5a1 5 KMAALEAKICHQIEYYFGDFNLPRDKF 31 (99)
T ss_dssp HHHHHHHHHHHHHHHHTSTTTGGGCHH
T ss_pred HHHHHHHHHHHHHHHhcCHhhhccCHH
Confidence 34455667888888 789999998864
No 4
>d1usub_ d.83.2.1 (B:) Activator of Hsp90 ATPase, Aha1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=33.23 E-value=36 Score=18.84 Aligned_cols=25 Identities=16% Similarity=0.097 Sum_probs=18.7
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHh
Q 044778 3 AIKKQ-AIKHREQVAKQQQAVLKHLL 27 (47)
Q Consensus 3 airKq-AsklreqVAkQqQAVlKqf~ 27 (47)
++||. ..+||+.+.+.+++.+..||
T Consensus 115 ~i~k~~~~~lr~~l~~f~~~L~~~~s 140 (142)
T d1usub_ 115 LIRSELLPKLRQIFQQFGKDLLATHG 140 (142)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhc
Confidence 45554 46788999988888888775
No 5
>d1eexa_ c.1.19.3 (A:) Diol dehydratase, alpha subunit {Klebsiella oxytoca [TaxId: 571]}
Probab=24.82 E-value=30 Score=24.68 Aligned_cols=21 Identities=29% Similarity=0.319 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 044778 7 QAIKHREQVAKQQQAVLKHLL 27 (47)
Q Consensus 7 qAsklreqVAkQqQAVlKqf~ 27 (47)
..-+.|..-||--||||+.+|
T Consensus 407 ~~i~vRnkAA~AiqaVf~~Lg 427 (551)
T d1eexa_ 407 DVIAIRNKAARALQAVFAGMG 427 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 456788888999999999998
No 6
>d2nn4a1 a.272.1.1 (A:1-62) Hypothetical protein YqgQ {Bacillus subtilis [TaxId: 1423]}
Probab=24.33 E-value=12 Score=19.71 Aligned_cols=8 Identities=38% Similarity=0.368 Sum_probs=6.8
Q ss_pred HHHHHHHh
Q 044778 20 QAVLKHLL 27 (47)
Q Consensus 20 QAVlKqf~ 27 (47)
|..||+||
T Consensus 8 qQLLK~fG 15 (62)
T d2nn4a1 8 QQLLKTFG 15 (62)
T ss_dssp HHHHHTTT
T ss_pred HHHHHHCC
Confidence 46899999
No 7
>d1b04a_ d.142.2.2 (A:) Adenylation domain of NAD+-dependent DNA ligase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=24.25 E-value=45 Score=20.07 Aligned_cols=30 Identities=10% Similarity=-0.020 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc-CcchhhcchH
Q 044778 4 IKKQAIKHREQVAKQQQAVLKHLLHL-GIENIAVHEA 39 (47)
Q Consensus 4 irKqAsklreqVAkQqQAVlKqf~~~-~~d~~v~DE~ 39 (47)
.++....|++++.+-..+ |+ .+.++|+|+.
T Consensus 5 ~~~~i~~L~~~i~~~~~~------Yy~~~~p~isD~e 35 (312)
T d1b04a_ 5 AERRAAELRELLNRYGYE------YYVLDRPSVPDAE 35 (312)
T ss_dssp HHHHHHHHHHHHHHHHHH------HHTTCSCCSSCHH
T ss_pred HHHHHHHHHHHHHHHHHH------HhcCCCCCCCHHH
Confidence 456666666665554222 54 5788999974
No 8
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}
Probab=24.22 E-value=5.3 Score=19.50 Aligned_cols=11 Identities=36% Similarity=0.353 Sum_probs=8.1
Q ss_pred CcchhhcchHH
Q 044778 30 GIENIAVHEAE 40 (47)
Q Consensus 30 ~~d~~v~DE~E 40 (47)
+-|-||+||+-
T Consensus 98 ~~~lvIiDEaH 108 (140)
T d1yksa1 98 NWEVIIMDEAH 108 (140)
T ss_dssp CCSEEEETTTT
T ss_pred ceeEEEEcccc
Confidence 55678899873
No 9
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}
Probab=23.66 E-value=5.5 Score=20.37 Aligned_cols=10 Identities=20% Similarity=0.248 Sum_probs=7.7
Q ss_pred CcchhhcchH
Q 044778 30 GIENIAVHEA 39 (47)
Q Consensus 30 ~~d~~v~DE~ 39 (47)
+-|.+|+||+
T Consensus 94 ~~~~vIiDE~ 103 (136)
T d1a1va1 94 AYDIIICDEC 103 (136)
T ss_dssp CCSEEEEETT
T ss_pred cCCEEEEecc
Confidence 4577888986
No 10
>d1dgsa3 d.142.2.2 (A:1-314) Adenylation domain of NAD+-dependent DNA ligase {Thermus filiformis [TaxId: 276]}
Probab=23.48 E-value=37 Score=20.59 Aligned_cols=31 Identities=3% Similarity=-0.020 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc-CcchhhcchH
Q 044778 3 AIKKQAIKHREQVAKQQQAVLKHLLHL-GIENIAVHEA 39 (47)
Q Consensus 3 airKqAsklreqVAkQqQAVlKqf~~~-~~d~~v~DE~ 39 (47)
.+++.-.+|++++.+-..+ |. .+.++|+|++
T Consensus 5 ~~~~~i~~L~~~i~~~~~~------YY~~~~p~IsD~~ 36 (314)
T d1dgsa3 5 EARRRINELRDLIRYHNYR------YYVLADPEISDAE 36 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHH------HHTTCCCCSCSSS
T ss_pred HHHHHHHHHHHHHHHHHHH------HhcCCCCCCCHHH
Confidence 3566666777666554332 54 5788999973
No 11
>d1nvma1 a.5.7.1 (A:291-341) 4-hydroxy-2-oxovalerate aldolase DmpG, communication domain {Pseudomonas sp. [TaxId: 306]}
Probab=21.81 E-value=19 Score=18.31 Aligned_cols=21 Identities=29% Similarity=0.218 Sum_probs=17.0
Q ss_pred HHHHHHHHh----hcCcchhhcchH
Q 044778 19 QQAVLKHLL----HLGIENIAVHEA 39 (47)
Q Consensus 19 qQAVlKqf~----~~~~d~~v~DE~ 39 (47)
-..+|.-+| -||.++||+|-+
T Consensus 19 ~rdil~ElGrR~~VgGQEDmIiDvA 43 (51)
T d1nvma1 19 TLDILVELGHRRMVGGQEDMIVDVA 43 (51)
T ss_dssp HHHHHHHHHHHTCCTTCTHHHHHHH
T ss_pred HHHHHHHHhhcccccchHHHHHHHH
Confidence 346888888 579999999976
No 12
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Probab=21.22 E-value=54 Score=16.76 Aligned_cols=18 Identities=11% Similarity=0.392 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 044778 2 EAIKKQAIKHREQVAKQQ 19 (47)
Q Consensus 2 dairKqAsklreqVAkQq 19 (47)
|.+|+.+.+|++++-..+
T Consensus 5 ~~l~~~~~~l~~~~~~~~ 22 (340)
T d1tbga_ 5 DQLRQEAEQLKNQIRDAR 22 (340)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 678999999999886554
Done!