BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044779
(477 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XQE|A Chain A, The Mechanism Of Ammonia Transport Based On The Crystal
Structure Of Amtb Of E. Coli.
pdb|1XQF|A Chain A, The Mechanism Of Ammonia Transport Based On The Crystal
Structure Of Amtb Of E. Coli
Length = 418
Score = 185 bits (470), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 134/428 (31%), Positives = 208/428 (48%), Gaps = 25/428 (5%)
Query: 18 SPEWMSKADNAWQLTAATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVLVCWV 77
+P KADNA+ + LV ++PG+ + YG +++ K ++ FA V + WV
Sbjct: 1 APAVADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWV 60
Query: 78 GWGYQMSFGKKMIHFWGRPDVSLDENFLLSRAFAGYLPNATMVYFQFVFXXXXXXXXXXX 137
+GY ++FG+ +F+G + + +N L+ A G + V FQ F
Sbjct: 61 VYGYSLAFGEGN-NFFGNINWLMLKNIELT-AVMGSIYQYIHVAFQGSFACITVGLIVGA 118
Query: 138 XXXRMNFHAWMLFVPLWLTFSYTIGAYSIWCPEGWLAKLGIIDYSGGFVIHLSSGVAGFT 197
R+ F A ++FV +WLT SY A+ +W G LA G +D++GG V+H+++ +AG
Sbjct: 119 LAERIRFSAVLIFVVVWLTLSYIPIAHMVW-GGGLLASHGALDFAGGTVVHINAAIAGLV 177
Query: 198 AAYWVGPRATKDRERFPPNNIXXXXXXXXXXXXXXTGFNGGDPYNAGTDASLAVLNTHVC 257
AY +G R +E F P+N+ GFN G A A+LA +NT V
Sbjct: 178 GAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVA 237
Query: 258 TATSLLTWLILDILFFGKPSVIGATQGMITGLVCITPAAGVVQGWAAILMGMMSGSIPWY 317
TA ++L W+ + GKPS++GA G I GLV +TPA G + A+++G+++G +
Sbjct: 238 TAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLW 297
Query: 318 TMMVLHKKIPMLKRVDDTMAVFHTHAVAGSLGGILAGFFANPKLNRIFYLVDDWEHYIGL 377
+ +L + L RVDD VF H V G +G I+ G FA L +G
Sbjct: 298 GVTMLKR----LLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSLGG-----------VGF 342
Query: 378 AYGFQSNRASAGFRQMGVQLLGISFVIALNIFTTSVICVLIRIVVPLRLTDEELQTGDDA 437
A G Q+ VQL I+ I + + L + V LR+ +E+ + G D
Sbjct: 343 AEGVTMG------HQLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQEREGLDV 396
Query: 438 -IHGEEAY 444
HGE AY
Sbjct: 397 NSHGENAY 404
>pdb|2NMR|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
pdb|2NOP|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
pdb|3C1G|A Chain A, Substrate Binding, Deprotonation And Selectivity At The
Periplasmic Entrance Of The E. Coli Ammonia Channel Amtb
Length = 424
Score = 185 bits (470), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 134/428 (31%), Positives = 208/428 (48%), Gaps = 25/428 (5%)
Query: 18 SPEWMSKADNAWQLTAATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVLVCWV 77
+P KADNA+ + LV ++PG+ + YG +++ K ++ FA V + WV
Sbjct: 1 APAVADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWV 60
Query: 78 GWGYQMSFGKKMIHFWGRPDVSLDENFLLSRAFAGYLPNATMVYFQFVFXXXXXXXXXXX 137
+GY ++FG+ +F+G + + +N L+ A G + V FQ F
Sbjct: 61 VYGYSLAFGEGN-NFFGNINWLMLKNIELT-AVMGSIYQYIHVAFQGSFACITVGLIVGA 118
Query: 138 XXXRMNFHAWMLFVPLWLTFSYTIGAYSIWCPEGWLAKLGIIDYSGGFVIHLSSGVAGFT 197
R+ F A ++FV +WLT SY A+ +W G LA G +D++GG V+H+++ +AG
Sbjct: 119 LAERIRFSAVLIFVVVWLTLSYIPIAHMVW-GGGLLASHGALDFAGGTVVHINAAIAGLV 177
Query: 198 AAYWVGPRATKDRERFPPNNIXXXXXXXXXXXXXXTGFNGGDPYNAGTDASLAVLNTHVC 257
AY +G R +E F P+N+ GFN G A A+LA +NT V
Sbjct: 178 GAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVA 237
Query: 258 TATSLLTWLILDILFFGKPSVIGATQGMITGLVCITPAAGVVQGWAAILMGMMSGSIPWY 317
TA ++L W+ + GKPS++GA G I GLV +TPA G + A+++G+++G +
Sbjct: 238 TAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLW 297
Query: 318 TMMVLHKKIPMLKRVDDTMAVFHTHAVAGSLGGILAGFFANPKLNRIFYLVDDWEHYIGL 377
+ +L + L RVDD VF H V G +G I+ G FA L +G
Sbjct: 298 GVTMLKR----LLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSLGG-----------VGF 342
Query: 378 AYGFQSNRASAGFRQMGVQLLGISFVIALNIFTTSVICVLIRIVVPLRLTDEELQTGDDA 437
A G Q+ VQL I+ I + + L + V LR+ +E+ + G D
Sbjct: 343 AEGVTMG------HQLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQEREGLDV 396
Query: 438 -IHGEEAY 444
HGE AY
Sbjct: 397 NSHGENAY 404
>pdb|2NS1|A Chain A, Crystal Structure Of The E. Coli Ammonia Channel Amtb
Complexed With The Signal Transduction Protein Glnk
Length = 412
Score = 185 bits (470), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 134/428 (31%), Positives = 208/428 (48%), Gaps = 25/428 (5%)
Query: 18 SPEWMSKADNAWQLTAATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVLVCWV 77
+P KADNA+ + LV ++PG+ + YG +++ K ++ FA V + WV
Sbjct: 1 APAVADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWV 60
Query: 78 GWGYQMSFGKKMIHFWGRPDVSLDENFLLSRAFAGYLPNATMVYFQFVFXXXXXXXXXXX 137
+GY ++FG+ +F+G + + +N L+ A G + V FQ F
Sbjct: 61 VYGYSLAFGEGN-NFFGNINWLMLKNIELT-AVMGSIYQYIHVAFQGSFACITVGLIVGA 118
Query: 138 XXXRMNFHAWMLFVPLWLTFSYTIGAYSIWCPEGWLAKLGIIDYSGGFVIHLSSGVAGFT 197
R+ F A ++FV +WLT SY A+ +W G LA G +D++GG V+H+++ +AG
Sbjct: 119 LAERIRFSAVLIFVVVWLTLSYIPIAHMVW-GGGLLASHGALDFAGGTVVHINAAIAGLV 177
Query: 198 AAYWVGPRATKDRERFPPNNIXXXXXXXXXXXXXXTGFNGGDPYNAGTDASLAVLNTHVC 257
AY +G R +E F P+N+ GFN G A A+LA +NT V
Sbjct: 178 GAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVA 237
Query: 258 TATSLLTWLILDILFFGKPSVIGATQGMITGLVCITPAAGVVQGWAAILMGMMSGSIPWY 317
TA ++L W+ + GKPS++GA G I GLV +TPA G + A+++G+++G +
Sbjct: 238 TAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLW 297
Query: 318 TMMVLHKKIPMLKRVDDTMAVFHTHAVAGSLGGILAGFFANPKLNRIFYLVDDWEHYIGL 377
+ +L + L RVDD VF H V G +G I+ G FA L +G
Sbjct: 298 GVTMLKR----LLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSLGG-----------VGF 342
Query: 378 AYGFQSNRASAGFRQMGVQLLGISFVIALNIFTTSVICVLIRIVVPLRLTDEELQTGDDA 437
A G Q+ VQL I+ I + + L + V LR+ +E+ + G D
Sbjct: 343 AEGVTMG------HQLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQEREGLDV 396
Query: 438 -IHGEEAY 444
HGE AY
Sbjct: 397 NSHGENAY 404
>pdb|2NUU|A Chain A, Regulating The Escherichia Coli Ammonia Channel: The
Crystal Structure Of The Amtb-glnk Complex
pdb|2NUU|B Chain B, Regulating The Escherichia Coli Ammonia Channel: The
Crystal Structure Of The Amtb-glnk Complex
pdb|2NUU|C Chain C, Regulating The Escherichia Coli Ammonia Channel: The
Crystal Structure Of The Amtb-glnk Complex
pdb|2NUU|D Chain D, Regulating The Escherichia Coli Ammonia Channel: The
Crystal Structure Of The Amtb-glnk Complex
pdb|2NUU|E Chain E, Regulating The Escherichia Coli Ammonia Channel: The
Crystal Structure Of The Amtb-glnk Complex
pdb|2NUU|F Chain F, Regulating The Escherichia Coli Ammonia Channel: The
Crystal Structure Of The Amtb-glnk Complex
Length = 415
Score = 183 bits (464), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 133/422 (31%), Positives = 206/422 (48%), Gaps = 25/422 (5%)
Query: 24 KADNAWQLTAATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVLVCWVGWGYQM 83
KADNA+ + LV ++PG+ + YG +++ K ++ FA V + WV +GY +
Sbjct: 16 KADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGYSL 75
Query: 84 SFGKKMIHFWGRPDVSLDENFLLSRAFAGYLPNATMVYFQFVFXXXXXXXXXXXXXXRMN 143
+FG+ +F+G + + +N L+ A G + V FQ F R+
Sbjct: 76 AFGEGN-NFFGNINWLMLKNIELT-AVMGSIYQYIHVAFQGSFACITVGLIVGALAERIR 133
Query: 144 FHAWMLFVPLWLTFSYTIGAYSIWCPEGWLAKLGIIDYSGGFVIHLSSGVAGFTAAYWVG 203
F A ++FV +WLT SY A+ +W G LA G +D++GG V+H+++ +AG AY +G
Sbjct: 134 FSAVLIFVVVWLTLSYIPIAHMVW-GGGLLASHGALDFAGGTVVHINAAIAGLVGAYLIG 192
Query: 204 PRATKDRERFPPNNIXXXXXXXXXXXXXXTGFNGGDPYNAGTDASLAVLNTHVCTATSLL 263
R +E F P+N+ GFN G A A+LA +NT V TA ++L
Sbjct: 193 KRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVATAAAIL 252
Query: 264 TWLILDILFFGKPSVIGATQGMITGLVCITPAAGVVQGWAAILMGMMSGSIPWYTMMVLH 323
W+ + GKPS++GA G I GLV +TPA G + A+++G+++G + + +L
Sbjct: 253 GWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTMLK 312
Query: 324 KKIPMLKRVDDTMAVFHTHAVAGSLGGILAGFFANPKLNRIFYLVDDWEHYIGLAYGFQS 383
+ L RVDD VF H V G +G I+ G FA L +G A G
Sbjct: 313 R----LLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSLGG-----------VGFAEGVTM 357
Query: 384 NRASAGFRQMGVQLLGISFVIALNIFTTSVICVLIRIVVPLRLTDEELQTGDDA-IHGEE 442
Q+ VQL I+ I + + L + V LR+ +E+ + G D HGE
Sbjct: 358 G------HQLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQEREGLDVNSHGEN 411
Query: 443 AY 444
AY
Sbjct: 412 AY 413
>pdb|2NOW|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
Length = 424
Score = 182 bits (462), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 133/428 (31%), Positives = 207/428 (48%), Gaps = 25/428 (5%)
Query: 18 SPEWMSKADNAWQLTAATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVLVCWV 77
+P KADNA+ + LV ++PG+ + YG +++ K ++ FA V + WV
Sbjct: 1 APAVADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWV 60
Query: 78 GWGYQMSFGKKMIHFWGRPDVSLDENFLLSRAFAGYLPNATMVYFQFVFXXXXXXXXXXX 137
+GY ++FG+ +F+G + + +N L+ A G + V FQ F
Sbjct: 61 VYGYSLAFGEGN-NFFGNINWLMLKNIELT-AVMGSIYQYIHVAFQGSFACITVGLIVGA 118
Query: 138 XXXRMNFHAWMLFVPLWLTFSYTIGAYSIWCPEGWLAKLGIIDYSGGFVIHLSSGVAGFT 197
R+ F A ++FV +WLT SY A+ +W G LA G +D++GG V+ +++ +AG
Sbjct: 119 LAERIRFSAVLIFVVVWLTLSYIPIAHMVW-GGGLLASHGALDFAGGTVVEINAAIAGLV 177
Query: 198 AAYWVGPRATKDRERFPPNNIXXXXXXXXXXXXXXTGFNGGDPYNAGTDASLAVLNTHVC 257
AY +G R +E F P+N+ GFN G A A+LA +NT V
Sbjct: 178 GAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVA 237
Query: 258 TATSLLTWLILDILFFGKPSVIGATQGMITGLVCITPAAGVVQGWAAILMGMMSGSIPWY 317
TA ++L W+ + GKPS++GA G I GLV +TPA G + A+++G+++G +
Sbjct: 238 TAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLW 297
Query: 318 TMMVLHKKIPMLKRVDDTMAVFHTHAVAGSLGGILAGFFANPKLNRIFYLVDDWEHYIGL 377
+ +L + L RVDD VF H V G +G I+ G FA L +G
Sbjct: 298 GVTMLKR----LLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSLGG-----------VGF 342
Query: 378 AYGFQSNRASAGFRQMGVQLLGISFVIALNIFTTSVICVLIRIVVPLRLTDEELQTGDDA 437
A G Q+ VQL I+ I + + L + V LR+ +E+ + G D
Sbjct: 343 AEGVTMG------HQLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQEREGLDV 396
Query: 438 -IHGEEAY 444
HGE AY
Sbjct: 397 NSHGENAY 404
>pdb|3C1I|A Chain A, Substrate Binding, Deprotonation And Selectivity At The
Periplasmic Entrance Of The E. Coli Ammonia Channel Amtb
Length = 424
Score = 182 bits (461), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 133/428 (31%), Positives = 207/428 (48%), Gaps = 25/428 (5%)
Query: 18 SPEWMSKADNAWQLTAATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVLVCWV 77
+P KADNA+ + LV ++PG+ + YG +++ K ++ FA V + WV
Sbjct: 1 APAVADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWV 60
Query: 78 GWGYQMSFGKKMIHFWGRPDVSLDENFLLSRAFAGYLPNATMVYFQFVFXXXXXXXXXXX 137
+GY ++FG+ +F+G + + +N L+ A G + V FQ F
Sbjct: 61 VYGYSLAFGEGN-NFFGNINWLMLKNIELT-AVMGSIYQYIHVAFQGSFACITVGLIVGA 118
Query: 138 XXXRMNFHAWMLFVPLWLTFSYTIGAYSIWCPEGWLAKLGIIDYSGGFVIHLSSGVAGFT 197
R+ F A ++FV +WLT SY A+ +W G LA G +D++GG V+H+++ +AG
Sbjct: 119 LAERIRFSAVLIFVVVWLTLSYIPIAHMVW-GGGLLASHGALDFAGGTVVHINAAIAGLV 177
Query: 198 AAYWVGPRATKDRERFPPNNIXXXXXXXXXXXXXXTGFNGGDPYNAGTDASLAVLNTHVC 257
AY +G R +E F P+N+ G N G A A+LA +NT V
Sbjct: 178 GAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGANAGSAGTANEIAALAFVNTVVA 237
Query: 258 TATSLLTWLILDILFFGKPSVIGATQGMITGLVCITPAAGVVQGWAAILMGMMSGSIPWY 317
TA ++L W+ + GKPS++GA G I GLV +TPA G + A+++G+++G +
Sbjct: 238 TAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLW 297
Query: 318 TMMVLHKKIPMLKRVDDTMAVFHTHAVAGSLGGILAGFFANPKLNRIFYLVDDWEHYIGL 377
+ +L + L RVDD VF H V G +G I+ G FA L +G
Sbjct: 298 GVTMLKR----LLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSLGG-----------VGF 342
Query: 378 AYGFQSNRASAGFRQMGVQLLGISFVIALNIFTTSVICVLIRIVVPLRLTDEELQTGDDA 437
A G Q+ VQL I+ I + + L + V LR+ +E+ + G D
Sbjct: 343 AEGVTMG------HQLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQEREGLDV 396
Query: 438 -IHGEEAY 444
HGE AY
Sbjct: 397 NSHGENAY 404
>pdb|3C1H|A Chain A, Substrate Binding, Deprotonation And Selectivity At The
Periplasmic Entrance Of The E. Coli Ammonia Channel Amtb
Length = 424
Score = 182 bits (461), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 133/428 (31%), Positives = 207/428 (48%), Gaps = 25/428 (5%)
Query: 18 SPEWMSKADNAWQLTAATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVLVCWV 77
+P KADNA+ + LV ++PG+ + YG +++ K ++ FA V + WV
Sbjct: 1 APAVADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWV 60
Query: 78 GWGYQMSFGKKMIHFWGRPDVSLDENFLLSRAFAGYLPNATMVYFQFVFXXXXXXXXXXX 137
+GY ++FG+ +F+G + + +N L+ A G + V FQ
Sbjct: 61 VYGYSLAFGEGN-NFFGNINWLMLKNIELT-AVMGSIYQYIHVAFQGSAACITVGLIVGA 118
Query: 138 XXXRMNFHAWMLFVPLWLTFSYTIGAYSIWCPEGWLAKLGIIDYSGGFVIHLSSGVAGFT 197
R+ F A ++FV +WLT SY A+ +W G LA G +D++GG V+H+++ +AG
Sbjct: 119 LAERIRFSAVLIFVVVWLTLSYIPIAHMVW-GGGLLASHGALDFAGGTVVHINAAIAGLV 177
Query: 198 AAYWVGPRATKDRERFPPNNIXXXXXXXXXXXXXXTGFNGGDPYNAGTDASLAVLNTHVC 257
AY +G R +E F P+N+ GFN G A A+LA +NT V
Sbjct: 178 GAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVA 237
Query: 258 TATSLLTWLILDILFFGKPSVIGATQGMITGLVCITPAAGVVQGWAAILMGMMSGSIPWY 317
TA ++L W+ + GKPS++GA G I GLV +TPA G + A+++G+++G +
Sbjct: 238 TAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLW 297
Query: 318 TMMVLHKKIPMLKRVDDTMAVFHTHAVAGSLGGILAGFFANPKLNRIFYLVDDWEHYIGL 377
+ +L + L RVDD VF H V G +G I+ G FA L +G
Sbjct: 298 GVTMLKR----LLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSLGG-----------VGF 342
Query: 378 AYGFQSNRASAGFRQMGVQLLGISFVIALNIFTTSVICVLIRIVVPLRLTDEELQTGDDA 437
A G Q+ VQL I+ I + + L + V LR+ +E+ + G D
Sbjct: 343 AEGVTMG------HQLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQEREGLDV 396
Query: 438 -IHGEEAY 444
HGE AY
Sbjct: 397 NSHGENAY 404
>pdb|2NPD|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
Length = 424
Score = 181 bits (460), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 133/428 (31%), Positives = 207/428 (48%), Gaps = 25/428 (5%)
Query: 18 SPEWMSKADNAWQLTAATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVLVCWV 77
+P KADNA+ + LV ++PG+ + YG +++ K ++ FA V + WV
Sbjct: 1 APAVADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWV 60
Query: 78 GWGYQMSFGKKMIHFWGRPDVSLDENFLLSRAFAGYLPNATMVYFQFVFXXXXXXXXXXX 137
+GY ++FG+ +F+G + + +N L+ A G + V FQ F
Sbjct: 61 VYGYSLAFGEGN-NFFGNINWLMLKNIELT-AVMGSIYQYIHVAFQGSFACITVGLIVGA 118
Query: 138 XXXRMNFHAWMLFVPLWLTFSYTIGAYSIWCPEGWLAKLGIIDYSGGFVIHLSSGVAGFT 197
R+ F A ++FV +WLT SY A+ +W G LA G +D++GG V+ +++ +AG
Sbjct: 119 LAERIRFSAVLIFVVVWLTLSYIPIAHMVW-GGGLLASHGALDFAGGTVVFINAAIAGLV 177
Query: 198 AAYWVGPRATKDRERFPPNNIXXXXXXXXXXXXXXTGFNGGDPYNAGTDASLAVLNTHVC 257
AY +G R +E F P+N+ GFN G A A+LA +NT V
Sbjct: 178 GAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVA 237
Query: 258 TATSLLTWLILDILFFGKPSVIGATQGMITGLVCITPAAGVVQGWAAILMGMMSGSIPWY 317
TA ++L W+ + GKPS++GA G I GLV +TPA G + A+++G+++G +
Sbjct: 238 TAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLW 297
Query: 318 TMMVLHKKIPMLKRVDDTMAVFHTHAVAGSLGGILAGFFANPKLNRIFYLVDDWEHYIGL 377
+ +L + L RVDD VF H V G +G I+ G FA L +G
Sbjct: 298 GVTMLKR----LLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSLGG-----------VGF 342
Query: 378 AYGFQSNRASAGFRQMGVQLLGISFVIALNIFTTSVICVLIRIVVPLRLTDEELQTGDDA 437
A G Q+ VQL I+ I + + L + V LR+ +E+ + G D
Sbjct: 343 AEGVTMG------HQLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQEREGLDV 396
Query: 438 -IHGEEAY 444
HGE AY
Sbjct: 397 NSHGENAY 404
>pdb|2NPG|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
pdb|2NPJ|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
Length = 424
Score = 181 bits (460), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 133/428 (31%), Positives = 207/428 (48%), Gaps = 25/428 (5%)
Query: 18 SPEWMSKADNAWQLTAATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVLVCWV 77
+P KADNA+ + LV ++PG+ + YG +++ K ++ FA V + WV
Sbjct: 1 APAVADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWV 60
Query: 78 GWGYQMSFGKKMIHFWGRPDVSLDENFLLSRAFAGYLPNATMVYFQFVFXXXXXXXXXXX 137
+GY ++FG+ +F+G + + +N L+ A G + V FQ F
Sbjct: 61 VYGYSLAFGEGN-NFFGNINWLMLKNIELT-AVMGSIYQYIHVAFQGSFACITVGLIVGA 118
Query: 138 XXXRMNFHAWMLFVPLWLTFSYTIGAYSIWCPEGWLAKLGIIDYSGGFVIHLSSGVAGFT 197
R+ F A ++FV +WLT SY A+ +W G LA G +D++GG V+H+++ +AG
Sbjct: 119 LAERIRFSAVLIFVVVWLTLSYIPIAHMVW-GGGLLASHGALDFAGGTVVHINAAIAGLV 177
Query: 198 AAYWVGPRATKDRERFPPNNIXXXXXXXXXXXXXXTGFNGGDPYNAGTDASLAVLNTHVC 257
AY +G R +E F P+N+ GFN G A A+LA +NT V
Sbjct: 178 GAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVA 237
Query: 258 TATSLLTWLILDILFFGKPSVIGATQGMITGLVCITPAAGVVQGWAAILMGMMSGSIPWY 317
TA ++L W+ + GKPS++GA G I GLV +TPA G + A+++G+++G +
Sbjct: 238 TAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLW 297
Query: 318 TMMVLHKKIPMLKRVDDTMAVFHTHAVAGSLGGILAGFFANPKLNRIFYLVDDWEHYIGL 377
+ +L + L RVDD VF V G +G I+ G FA L +G
Sbjct: 298 GVTMLKR----LLRVDDPCDVFGVFGVCGIVGCIMTGIFAASSLGG-----------VGF 342
Query: 378 AYGFQSNRASAGFRQMGVQLLGISFVIALNIFTTSVICVLIRIVVPLRLTDEELQTGDDA 437
A G Q+ VQL I+ I + + L + V LR+ +E+ + G D
Sbjct: 343 AEGVTMG------HQLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQEREGLDV 396
Query: 438 -IHGEEAY 444
HGE AY
Sbjct: 397 NSHGENAY 404
>pdb|2NPC|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
Length = 424
Score = 181 bits (459), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 133/428 (31%), Positives = 207/428 (48%), Gaps = 25/428 (5%)
Query: 18 SPEWMSKADNAWQLTAATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVLVCWV 77
+P KADNA+ + LV ++PG+ + YG +++ K ++ FA V + WV
Sbjct: 1 APAVADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWV 60
Query: 78 GWGYQMSFGKKMIHFWGRPDVSLDENFLLSRAFAGYLPNATMVYFQFVFXXXXXXXXXXX 137
+GY ++FG+ +F+G + + +N L+ A G + V FQ F
Sbjct: 61 VYGYSLAFGEGN-NFFGNINWLMLKNIELT-AVMGSIYQYIHVAFQGSFACITVGLIVGA 118
Query: 138 XXXRMNFHAWMLFVPLWLTFSYTIGAYSIWCPEGWLAKLGIIDYSGGFVIHLSSGVAGFT 197
R+ F A ++FV +WLT SY A+ +W G LA G +D++GG V+ +++ +AG
Sbjct: 119 LAERIRFSAVLIFVVVWLTLSYIPIAHMVW-GGGLLASHGALDFAGGTVVAINAAIAGLV 177
Query: 198 AAYWVGPRATKDRERFPPNNIXXXXXXXXXXXXXXTGFNGGDPYNAGTDASLAVLNTHVC 257
AY +G R +E F P+N+ GFN G A A+LA +NT V
Sbjct: 178 GAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVA 237
Query: 258 TATSLLTWLILDILFFGKPSVIGATQGMITGLVCITPAAGVVQGWAAILMGMMSGSIPWY 317
TA ++L W+ + GKPS++GA G I GLV +TPA G + A+++G+++G +
Sbjct: 238 TAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLW 297
Query: 318 TMMVLHKKIPMLKRVDDTMAVFHTHAVAGSLGGILAGFFANPKLNRIFYLVDDWEHYIGL 377
+ +L + L RVDD VF H V G +G I+ G FA L +G
Sbjct: 298 GVTMLKR----LLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSLGG-----------VGF 342
Query: 378 AYGFQSNRASAGFRQMGVQLLGISFVIALNIFTTSVICVLIRIVVPLRLTDEELQTGDDA 437
A G Q+ VQL I+ I + + L + V LR+ +E+ + G D
Sbjct: 343 AEGVTMG------HQLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQEREGLDV 396
Query: 438 -IHGEEAY 444
HGE AY
Sbjct: 397 NSHGENAY 404
>pdb|2NPE|A Chain A, An Unusual Twin-his Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
Length = 424
Score = 181 bits (459), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 133/428 (31%), Positives = 207/428 (48%), Gaps = 25/428 (5%)
Query: 18 SPEWMSKADNAWQLTAATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVLVCWV 77
+P KADNA+ + LV ++PG+ + YG +++ K ++ FA V + WV
Sbjct: 1 APAVADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWV 60
Query: 78 GWGYQMSFGKKMIHFWGRPDVSLDENFLLSRAFAGYLPNATMVYFQFVFXXXXXXXXXXX 137
+GY ++FG+ +F+G + + +N L+ A G + V FQ F
Sbjct: 61 VYGYSLAFGEGN-NFFGNINWLMLKNIELT-AVMGSIYQYIHVAFQGSFACITVGLIVGA 118
Query: 138 XXXRMNFHAWMLFVPLWLTFSYTIGAYSIWCPEGWLAKLGIIDYSGGFVIHLSSGVAGFT 197
R+ F A ++FV +WLT SY A+ +W G LA G +D++GG V+H+++ +AG
Sbjct: 119 LAERIRFSAVLIFVVVWLTLSYIPIAHMVW-GGGLLASHGALDFAGGTVVHINAAIAGLV 177
Query: 198 AAYWVGPRATKDRERFPPNNIXXXXXXXXXXXXXXTGFNGGDPYNAGTDASLAVLNTHVC 257
AY +G R +E F P+N+ GFN G A A+LA +NT V
Sbjct: 178 GAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVA 237
Query: 258 TATSLLTWLILDILFFGKPSVIGATQGMITGLVCITPAAGVVQGWAAILMGMMSGSIPWY 317
TA ++L W+ + GKPS++GA G I GLV +TPA G + A+++G+++G +
Sbjct: 238 TAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLW 297
Query: 318 TMMVLHKKIPMLKRVDDTMAVFHTHAVAGSLGGILAGFFANPKLNRIFYLVDDWEHYIGL 377
+ +L + L RVDD VF V G +G I+ G FA L +G
Sbjct: 298 GVTMLKR----LLRVDDPCDVFGVAGVCGIVGCIMTGIFAASSLGG-----------VGF 342
Query: 378 AYGFQSNRASAGFRQMGVQLLGISFVIALNIFTTSVICVLIRIVVPLRLTDEELQTGDDA 437
A G Q+ VQL I+ I + + L + V LR+ +E+ + G D
Sbjct: 343 AEGVTMG------HQLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQEREGLDV 396
Query: 438 -IHGEEAY 444
HGE AY
Sbjct: 397 NSHGENAY 404
>pdb|3C1J|A Chain A, Substrate Binding, Deprotonation And Selectivity At The
Periplasmic Entrance Of The E. Coli Ammonia Channel Amtb
Length = 424
Score = 179 bits (453), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 132/428 (30%), Positives = 206/428 (48%), Gaps = 25/428 (5%)
Query: 18 SPEWMSKADNAWQLTAATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVLVCWV 77
+P KADNA+ + LV ++PG+ + YG +++ K ++ FA V + WV
Sbjct: 1 APAVADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWV 60
Query: 78 GWGYQMSFGKKMIHFWGRPDVSLDENFLLSRAFAGYLPNATMVYFQFVFXXXXXXXXXXX 137
+GY ++FG+ +F+G + + +N L+ A G + V FQ
Sbjct: 61 VYGYSLAFGEGN-NFFGNINWLMLKNIELT-AVMGSIYQYIHVAFQGSAACITVGLIVGA 118
Query: 138 XXXRMNFHAWMLFVPLWLTFSYTIGAYSIWCPEGWLAKLGIIDYSGGFVIHLSSGVAGFT 197
R+ F A ++FV +WLT SY A+ +W G LA G +D++GG V+H+++ +AG
Sbjct: 119 LAERIRFSAVLIFVVVWLTLSYIPIAHMVW-GGGLLASHGALDFAGGTVVHINAAIAGLV 177
Query: 198 AAYWVGPRATKDRERFPPNNIXXXXXXXXXXXXXXTGFNGGDPYNAGTDASLAVLNTHVC 257
AY +G R +E F P+N+ G N G A A+LA +NT V
Sbjct: 178 GAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGANAGSAGTANEIAALAFVNTVVA 237
Query: 258 TATSLLTWLILDILFFGKPSVIGATQGMITGLVCITPAAGVVQGWAAILMGMMSGSIPWY 317
TA ++L W+ + GKPS++GA G I GLV +TPA G + A+++G+++G +
Sbjct: 238 TAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLW 297
Query: 318 TMMVLHKKIPMLKRVDDTMAVFHTHAVAGSLGGILAGFFANPKLNRIFYLVDDWEHYIGL 377
+ +L + L RVDD VF H V G +G I+ G FA L +G
Sbjct: 298 GVTMLKR----LLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSLGG-----------VGF 342
Query: 378 AYGFQSNRASAGFRQMGVQLLGISFVIALNIFTTSVICVLIRIVVPLRLTDEELQTGDDA 437
A G Q+ VQL I+ I + + L + V LR+ +E+ + G D
Sbjct: 343 AEGVTMG------HQLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQEREGLDV 396
Query: 438 -IHGEEAY 444
HGE AY
Sbjct: 397 NSHGENAY 404
>pdb|2NPK|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
Length = 424
Score = 177 bits (450), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 132/428 (30%), Positives = 206/428 (48%), Gaps = 25/428 (5%)
Query: 18 SPEWMSKADNAWQLTAATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVLVCWV 77
+P KADNA+ + LV ++PG+ + YG +++ K ++ FA V + WV
Sbjct: 1 APAVADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWV 60
Query: 78 GWGYQMSFGKKMIHFWGRPDVSLDENFLLSRAFAGYLPNATMVYFQFVFXXXXXXXXXXX 137
+GY ++FG+ +F+G + + +N L+ A G + V FQ F
Sbjct: 61 VYGYSLAFGEGN-NFFGNINWLMLKNIELT-AVMGSIYQYIHVAFQGSFACITVGLIVGA 118
Query: 138 XXXRMNFHAWMLFVPLWLTFSYTIGAYSIWCPEGWLAKLGIIDYSGGFVIHLSSGVAGFT 197
R+ F A ++FV +WLT SY A+ +W G LA G +D++GG V+ +++ +AG
Sbjct: 119 LAERIRFSAVLIFVVVWLTLSYIPIAHMVW-GGGLLASHGALDFAGGTVVAINAAIAGLV 177
Query: 198 AAYWVGPRATKDRERFPPNNIXXXXXXXXXXXXXXTGFNGGDPYNAGTDASLAVLNTHVC 257
AY +G R +E F P+N+ GFN G A A+LA +NT V
Sbjct: 178 GAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVA 237
Query: 258 TATSLLTWLILDILFFGKPSVIGATQGMITGLVCITPAAGVVQGWAAILMGMMSGSIPWY 317
TA ++L W+ + GKPS++GA G I GLV +TPA G + A+++G+++G +
Sbjct: 238 TAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLW 297
Query: 318 TMMVLHKKIPMLKRVDDTMAVFHTHAVAGSLGGILAGFFANPKLNRIFYLVDDWEHYIGL 377
+ +L + L RVDD VF V G +G I+ G FA L +G
Sbjct: 298 GVTMLKR----LLRVDDPCDVFGVAGVCGIVGCIMTGIFAASSLGG-----------VGF 342
Query: 378 AYGFQSNRASAGFRQMGVQLLGISFVIALNIFTTSVICVLIRIVVPLRLTDEELQTGDDA 437
A G Q+ VQL I+ I + + L + V LR+ +E+ + G D
Sbjct: 343 AEGVTMG------HQLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQEREGLDV 396
Query: 438 -IHGEEAY 444
HGE AY
Sbjct: 397 NSHGENAY 404
>pdb|1U77|A Chain A, Crystal Structure Of Ammonia Channel Amtb From E. Coli
pdb|1U7C|A Chain A, Crystal Structure Of Amtb From E.Coli With Methyl
Ammonium.
pdb|1U7G|A Chain A, Crystal Structure Of Ammonia Channel Amtb From E. Coli
Length = 385
Score = 166 bits (419), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 112/347 (32%), Positives = 173/347 (49%), Gaps = 7/347 (2%)
Query: 18 SPEWMSKADNAWQLTAATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVLVCWV 77
+P KADNA+ LV ++PG+ + YG +++ K ++ FA V + WV
Sbjct: 1 APAVADKADNAFXXICTALVLFXTIPGIALFYGGLIRGKNVLSXLTQVTVTFALVCILWV 60
Query: 78 GWGYQMSFGKKMIHFWGRPDVSLDENFLLSRAFAGYLPNATMVYFQFVFXXXXXXXXXXX 137
+GY ++ G+ +F+G + +N L+ A G + V FQ F
Sbjct: 61 VYGYSLASGEGN-NFFGNINWLXLKNIELT-AVXGSIYQYIHVAFQGSFACITVGLIVGA 118
Query: 138 XXXRMNFHAWMLFVPLWLTFSYTIGAYSIWCPEGWLAKLGIIDYSGGFVIHLSSGVAGFT 197
R+ F A ++FV +WLT SY A+ +W G LA G +D++GG V+H+++ +AG
Sbjct: 119 LAERIRFPAVLIFVVVWLTLSYIPIAHXVW-GGGLLASHGALDFAGGTVVHINAAIAGLV 177
Query: 198 AAYWVGPRATKDRERFPPNNIXXXXXXXXXXXXXXTGFNGGDPYNAGTDASLAVLNTHVC 257
AY +G R +E F P+N+ GFN G A A+LA +NT V
Sbjct: 178 GAYLIGKRVGFGKEAFKPHNLPXVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVA 237
Query: 258 TATSLLTWLILDILFFGKPSVIGATQGMITGLVCITPAAGVVQGWAAILMGMMSGSIPWY 317
TA ++L W+ + G PS++GA G I GLV +TPA G + A+++G+++G +
Sbjct: 238 TAAAILGWIFGEWALRGLPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLW 297
Query: 318 TMMVLHKKIPMLKRVDDTMAVFHTHAVAGSLGGILAGFFANPKLNRI 364
+ L + L RVDD VF H V G +G I G FA L +
Sbjct: 298 GVTXLKR----LLRVDDPCDVFGVHGVCGIVGCIXTGIFAASSLGGV 340
>pdb|2B2F|A Chain A, Ammonium Transporter Amt-1 From A.Fulgidus (Native)
pdb|2B2H|A Chain A, Ammonium Transporter Amt-1 From A. Fulgidus (as)
pdb|2B2I|A Chain A, Ammonium Transporter Amt-1 From A. Fulgidus (Ma)
pdb|2B2J|A Chain A, Ammonium Transporter Amt-1 From A. Fulgidus (xe)
Length = 399
Score = 156 bits (395), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 123/426 (28%), Positives = 194/426 (45%), Gaps = 35/426 (8%)
Query: 22 MSKADNAWQLTAATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVLVCWVGWGY 81
MS + AW L + LV L VPG+ Y +V++K AVN ++ + ++ W+ +GY
Sbjct: 1 MSDGNVAWILASTALVMLM-VPGVGFFYAGMVRRKNAVNMIALSFISLIITVLLWIFYGY 59
Query: 82 QMSFGKKMIHFWGRPDVSLDENFLLSRAFAGYLPNATMVYFQFVFXXXXXXXXXXXXXXR 141
+SFG + G N+ L G + + +Q +F R
Sbjct: 60 SVSFGNDISGIIG------GLNYALLSGVKG--EDLLFMMYQMMFAAVTIAILTSAIAER 111
Query: 142 MNFHAWMLFVPLWLTFSYTIGAYSIWCPEGWLAKLGIIDYSGGFVIHLSSGVAGFTAAYW 201
+++L LWLTF Y A+ +W GWLAKLG +D++GG V+H+SSG A A
Sbjct: 112 AKVSSFILLSALWLTFVYAPFAHWLWGG-GWLAKLGALDFAGGMVVHISSGFAALAVAMT 170
Query: 202 VGPRATKDRERFPPNNIXXXXXXXXXXXXXXTGFNGGDPYNAGTDASLAVLNTHVCTATS 261
+G RA + P++I GFNGG A A AV+ T+ A +
Sbjct: 171 IGKRAGFEEYSIEPHSIPLTLIGAALLWFGWFGFNGGSALAANDVAINAVVVTNTSAAVA 230
Query: 262 LLTWLILDILFFGKPSVIGATQGMITGLVCITPAAGVVQGWAAILMGMMSGSIPWYTMMV 321
W+++ + GKP +G G I GL ITPAAG V AI++G+++G + + M
Sbjct: 231 GFVWMVIGWI-KGKPGSLGIVSGAIAGLAAITPAAGFVDVKGAIVIGLVAGIVCYLAM-- 287
Query: 322 LHKKIPMLKRVDDTMAVFHTHAVAGSLGGILAGFFANPKLNRIFYLVDDWEHYIGLAYGF 381
+ K++D+++ + H + G G + G ANP++N Y GL +G
Sbjct: 288 ---DFRIKKKIDESLDAWAIHGIGGLWGSVAVGILANPEVN----------GYAGLLFGN 334
Query: 382 QSNRASAGFRQMGVQLLGISFVIALNIFTTSVICVLIRIVVPLRLTDEELQTG-DDAIHG 440
S QL+ ++ A T ++ + V LR++ +E G D + H
Sbjct: 335 PQLLVS--------QLIAVASTTAYAFLVTLILAKAVDAAVGLRVSSQEEYVGLDLSQHE 386
Query: 441 EEAYAL 446
E AY L
Sbjct: 387 EVAYTL 392
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.451
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,388,905
Number of Sequences: 62578
Number of extensions: 581050
Number of successful extensions: 1520
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1440
Number of HSP's gapped (non-prelim): 39
length of query: 477
length of database: 14,973,337
effective HSP length: 102
effective length of query: 375
effective length of database: 8,590,381
effective search space: 3221392875
effective search space used: 3221392875
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)