Query 044779
Match_columns 477
No_of_seqs 144 out of 1175
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 06:41:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044779.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044779hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0004 AmtB Ammonia permease 100.0 1E-109 2E-114 850.7 35.8 403 22-447 1-405 (409)
2 KOG0682 Ammonia permease [Inor 100.0 4E-108 8E-113 847.7 33.8 423 14-451 20-449 (500)
3 PRK10666 ammonium transporter; 100.0 3E-104 7E-109 827.7 34.3 402 20-446 25-428 (428)
4 TIGR00836 amt ammonium transpo 100.0 2E-102 4E-107 811.6 35.9 396 27-444 1-403 (403)
5 TIGR03644 marine_trans_1 proba 100.0 1E-100 2E-105 797.2 34.6 384 24-447 2-404 (404)
6 PF00909 Ammonium_transp: Ammo 100.0 3.5E-94 7.6E-99 752.9 20.3 391 28-444 1-399 (399)
7 KOG3796 Ammonium transporter R 100.0 1.7E-50 3.8E-55 402.4 14.8 383 36-434 15-425 (442)
8 PF00909 Ammonium_transp: Ammo 82.4 18 0.00039 38.4 12.4 145 18-205 181-328 (399)
9 TIGR00836 amt ammonium transpo 65.2 1.6E+02 0.0034 31.6 14.1 143 20-205 189-333 (403)
10 PRK11624 cdsA CDP-diglyceride 56.0 13 0.00029 37.7 4.0 86 257-343 160-258 (285)
11 PF01891 CbiM: Cobalt uptake s 55.7 68 0.0015 30.7 8.6 21 183-206 61-81 (205)
12 TIGR03644 marine_trans_1 proba 53.2 3.2E+02 0.0069 29.3 19.2 139 21-203 199-344 (404)
13 PF06946 Phage_holin_5: Phage 52.6 57 0.0012 27.8 6.4 73 260-334 14-92 (93)
14 PF01148 CTP_transf_1: Cytidyl 46.0 25 0.00053 34.1 4.0 67 276-343 161-236 (259)
15 PHA03240 envelope glycoprotein 40.8 30 0.00064 33.8 3.4 36 2-37 184-223 (258)
16 PF12270 Cyt_c_ox_IV: Cytochro 40.6 1.1E+02 0.0024 27.9 6.9 47 152-207 15-63 (137)
17 PF06570 DUF1129: Protein of u 39.1 66 0.0014 30.9 5.7 109 217-333 77-204 (206)
18 PLN02594 phosphatidate cytidyl 34.8 25 0.00054 36.8 2.1 42 301-343 235-276 (342)
19 PF04657 DUF606: Protein of un 33.6 2.9E+02 0.0064 24.8 8.6 86 300-424 29-114 (138)
20 COG4120 ABC-type uncharacteriz 32.9 21 0.00046 35.9 1.2 46 285-334 42-87 (293)
21 PRK10712 PTS system fructose-s 32.2 1.6E+02 0.0034 33.1 7.9 52 272-337 293-344 (563)
22 PRK06433 NADH dehydrogenase su 32.2 67 0.0015 26.9 3.9 41 391-434 47-87 (88)
23 PRK10457 hypothetical protein; 28.0 93 0.002 25.8 4.0 38 282-319 8-47 (82)
24 TIGR01427 PTS_IIC_fructo PTS s 27.8 3.1E+02 0.0067 28.8 8.8 52 268-325 82-133 (346)
25 PF14074 DUF4257: Protein of u 27.3 26 0.00056 29.1 0.6 58 256-313 4-74 (82)
26 COG5070 VRG4 Nucleotide-sugar 27.1 1E+02 0.0022 30.8 4.6 64 255-319 224-298 (309)
27 PLN02953 phosphatidate cytidyl 26.4 76 0.0016 33.9 3.9 83 260-343 280-374 (403)
28 PRK10263 DNA translocase FtsK; 25.3 3.9E+02 0.0085 33.1 9.9 15 342-356 140-154 (1355)
29 PF01102 Glycophorin_A: Glycop 24.0 84 0.0018 28.0 3.2 30 303-332 67-97 (122)
30 COG0575 CdsA CDP-diglyceride s 23.3 69 0.0015 32.0 2.9 80 263-343 148-241 (265)
31 PRK10478 putative PTS system f 21.6 2.1E+02 0.0045 30.3 6.1 70 330-420 267-336 (359)
32 PRK11909 cobalt transport prot 20.9 8.1E+02 0.018 24.1 10.5 24 302-325 189-212 (230)
33 PRK10666 ammonium transporter; 20.8 1.1E+03 0.023 25.6 14.5 139 22-204 215-356 (428)
34 PF06738 DUF1212: Protein of u 20.6 3E+02 0.0065 25.6 6.6 67 214-291 99-167 (193)
35 COG2035 Predicted membrane pro 20.5 2.6E+02 0.0056 28.5 6.2 140 186-348 84-230 (276)
36 COG1288 Predicted membrane pro 20.1 86 0.0019 34.0 2.9 38 405-442 222-260 (481)
No 1
>COG0004 AmtB Ammonia permease [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.5e-110 Score=850.68 Aligned_cols=403 Identities=40% Similarity=0.723 Sum_probs=377.1
Q ss_pred cccchhHHHHHHHHHHHHHhHHHHHhhhhcccccccHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCcccccCccccc
Q 044779 22 MSKADNAWQLTAATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVLVCWVGWGYQMSFGKKMIHFWGRPDVSLD 101 (477)
Q Consensus 22 ~~~~d~~w~L~~~~lV~~~m~~Gf~lleaG~vr~kn~~~~l~~~~~~~~v~~i~~~~~Gy~lafg~~~~~fiG~~~~~~~ 101 (477)
+|..|+.|+|+|+.|| ++|||||+|+|+|++|+||++|+++|++.++++++++|+++||+++|+++.++|+|+...++.
T Consensus 1 ~~~~d~~wml~sa~LV-~lMtpGlalfy~Gl~R~Kn~ln~~m~~~~~~~i~~~~w~~~Gyslafg~~~~~~iG~~~~~~~ 79 (409)
T COG0004 1 MDSGDTAWMLLSAALV-LLMTPGLALFYGGLVRKKNVLNTLMQSFVAFAIVTLLWIFVGYSLAFGPDGNGFIGNLDQFFL 79 (409)
T ss_pred CCcccHHHHHHHHHHH-HHHhhHHHHHHhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhheecCCCCcccCCHHHHhc
Confidence 4689999999999999 999999999999999999999999999999999999999999999999866789999766544
Q ss_pred chhhccccc-CCCccchhhhHhHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhcceeeeeecCcccccccCcee
Q 044779 102 ENFLLSRAF-AGYLPNATMVYFQFVFAAITLILIAGALLGRMNFHAWMLFVPLWLTFSYTIGAYSIWCPEGWLAKLGIID 180 (477)
Q Consensus 102 ~~~~~~~~~-~~~i~~~~~~~fq~~Fa~~a~~I~sGavaeR~~~~~~~i~~~l~~~~vYp~~~hwvW~~~GwL~~lG~~D 180 (477)
.+...++.. ..++|+.++++||++||++|++|++|+++||+|+.+|++|+++|.+++|||++||+|+++|||.++|++|
T Consensus 80 ~~~~~~~~~~~~~ip~~~f~~FQ~~FAait~alisGa~AER~kf~a~lvf~~lw~~~vY~p~ahWvWggggwl~~~g~~D 159 (409)
T COG0004 80 NGLGFAAVAGGAGIPELVFFAFQMMFAAITPALISGAVAERMKFSAYLLFSVLWSTLVYPPVAHWVWGGGGWLALLGALD 159 (409)
T ss_pred cCccccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhheeEecCchHHHhcCcee
Confidence 333222221 2468999999999999999999999999999999999999999999999999999999899999999999
Q ss_pred cCCCchhhhhHHHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHHHHHHHhhhhhccCCCCCCCcchhhHHHHHHHHHHH
Q 044779 181 YSGGFVIHLSSGVAGFTAAYWVGPRATKDRERFPPNNILLMLAGAGLLWMGWTGFNGGDPYNAGTDASLAVLNTHVCTAT 260 (477)
Q Consensus 181 faG~~vVH~~gG~~aL~~a~~lG~R~g~~~~~~~~hs~~~~~lGt~lLw~GW~gFN~gs~~~~~~~~~~a~~NT~la~a~ 260 (477)
||||+|||..+|+.||++++++|||+++.+++++|||++++++|+.+||+||+|||+||++..+.++..+++||++|+++
T Consensus 160 FAGgtVVHi~aG~aaLa~a~~lG~R~g~~~~~~~pHNl~~~~lGa~lLWfGWfGFN~GSal~~~~~a~~a~~nT~lAaa~ 239 (409)
T COG0004 160 FAGGTVVHINAGFAALAAALVLGKRIGGKPVAIPPHNLPLVVLGAALLWFGWFGFNAGSALAANGVAALAFVNTNLAAAA 239 (409)
T ss_pred cCCCceEEechhHHHHHHHHHeecccCCCCCCCCCCchhHHHHHHHHHHHHHccCCccchhhhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCchhhhhhhhhccceeecCCCCCcchHHHHHHHHhhhhHHHHHHHHHhhhcCcccccccccCccc
Q 044779 261 SLLTWLILDILFFGKPSVIGATQGMITGLVCITPAAGVVQGWAAILMGMMSGSIPWYTMMVLHKKIPMLKRVDDTMAVFH 340 (477)
Q Consensus 261 g~lt~~~~~~~~~~k~s~~~~~nG~LaGlVaIta~~~~v~pw~A~iiG~vag~i~~~~~~~l~~~l~~~l~IDD~~~v~~ 340 (477)
++++|++++|+++||+|+..+|||++||||+|||+|++|+||+|++||+++|++|+++.++++|| +|+|||+|+++
T Consensus 240 g~l~w~~~e~~~~~Kp~~lg~~sG~vAGLVaITpaag~V~p~~A~iiGii~g~i~~~a~~~lk~~----l~~DD~ld~f~ 315 (409)
T COG0004 240 GALGWMLIEWLRNGKPSLLGAASGAVAGLVAITPAAGFVSPWGALIIGLIAGVICYFAVKLLKKK----LGVDDALDVFG 315 (409)
T ss_pred HHHHHHHHHHHHcCCCchhhhhhHHHhHHHhcCCcccccCcHHHHHHHHHHHHHHHHHHHHHHHh----cCCCCccccee
Confidence 99999999999999999999999999999999999999999999999999999999999998886 89999999999
Q ss_pred ccccchhhhhhhhhhhcCccccchhcccCCcccccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044779 341 THAVAGSLGGILAGFFANPKLNRIFYLVDDWEHYIGLAYGFQSNRASAGFRQMGVQLLGISFVIALNIFTTSVICVLIRI 420 (477)
Q Consensus 341 vHg~~Gi~G~i~~glfa~~~~~~~~~~~~~~~~~~Gl~~g~~~~~~~~~~~ql~~Ql~g~~v~~~~s~~~~~i~~~ilk~ 420 (477)
+||++|+||++++|+|++++.. ... |++|+ +++|++.|+.+++++.+|++++++++++++|+
T Consensus 316 vHGvgGi~G~i~~GiFa~~~~~-------~~~---G~~~~--------~~~~l~~Q~~~v~~~~~~~~v~t~ii~~vl~~ 377 (409)
T COG0004 316 VHGVGGIVGAILTGIFAAPAVG-------GGG---GLFYG--------GGVQLGVQLLGVLVTIVYAFVVTFIILKVLKL 377 (409)
T ss_pred ccchhhHHHHHHHHHhcCcccc-------ccC---ccccc--------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999998641 112 66653 35999999999999999999999999999999
Q ss_pred hcCCCCChHHHhcC-Chhhhchhccccc
Q 044779 421 VVPLRLTDEELQTG-DDAIHGEEAYALW 447 (477)
Q Consensus 421 ~~~LRv~~e~E~~G-D~~~hg~~ay~~~ 447 (477)
+.+||++||||++| |..||||++|++.
T Consensus 378 ~~gLRvs~eeE~~GlD~~~Hge~aY~~~ 405 (409)
T COG0004 378 IIGLRVSEEEELEGLDISEHGESAYSEE 405 (409)
T ss_pred ccCCCCCHHHHhhCCChHHhcccccccc
Confidence 99999999999999 9999999999864
No 2
>KOG0682 consensus Ammonia permease [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.5e-108 Score=847.65 Aligned_cols=423 Identities=35% Similarity=0.572 Sum_probs=388.2
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHHhHHHHHhhhhcccccccHHHHHHHHHHHHHHHHHHHHHHhhhhhccCC-CCcc
Q 044779 14 PDDASPEWMSKADNAWQLTAATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVLVCWVGWGYQMSFGKK-MIHF 92 (477)
Q Consensus 14 ~~~~~~~~~~~~d~~w~L~~~~lV~~~m~~Gf~lleaG~vr~kn~~~~l~~~~~~~~v~~i~~~~~Gy~lafg~~-~~~f 92 (477)
++++.|+.+|..|+.|++.++.+| |.|||||+|||+|+||+||++|+|+||+++.+++.++||++||+||||+. .++|
T Consensus 20 ~~~~~~~~y~~dn~~~l~sss~lv-F~M~~Gfg~L~sG~vr~Kna~nim~~nvld~a~g~l~y~~~GyslAFg~~~~n~F 98 (500)
T KOG0682|consen 20 LTKFTPNAYDLDNTAWLLSSSFLV-FTMQPGFGLLYSGLVRAKNAVNIMLKNVLDVAVGGLQYYLFGYSLAFGDSPSNGF 98 (500)
T ss_pred ccccCcchhcCCchhhHHHHHHHH-HHhcccHHHhhhccchhhhHHHHHHHHHHHHHHHHHHHHHhhheeeccCCCCCCc
Confidence 467788888999999999999999 99999999999999999999999999999999999999999999999987 7899
Q ss_pred cccCcccccchhhcccccCCCccchhhhHhHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhcceeeeeecCccc
Q 044779 93 WGRPDVSLDENFLLSRAFAGYLPNATMVYFQFVFAAITLILIAGALLGRMNFHAWMLFVPLWLTFSYTIGAYSIWCPEGW 172 (477)
Q Consensus 93 iG~~~~~~~~~~~~~~~~~~~i~~~~~~~fq~~Fa~~a~~I~sGavaeR~~~~~~~i~~~l~~~~vYp~~~hwvW~~~Gw 172 (477)
||...++...++..++....++|+..+++||++||+++++|++|+++||+|+++|++|+++|.++||||++||+|+|+||
T Consensus 99 iG~~~~F~~~~~~g~~~~~~~~p~~~~f~FQ~~FA~~a~~i~sGa~AER~~l~~~~v~~~~~~tlVY~~~a~W~W~~~Gw 178 (500)
T KOG0682|consen 99 IGKLDFFGLRNVSGDPSSGSTIPDYSFFLFQGMFAATAATIVSGAVAERGRLKPYMVFSFFLTTLVYCPVAHWVWSPNGW 178 (500)
T ss_pred eeeccccccccCCCCcCCccchhhHHHHHHHHHHHHHHHHHhhhHHHhhhcchhHHHHHHHHHHhcccccceeeecCCce
Confidence 99988644444432333223378999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCceecCCCchhhhhHHHHHHHHHHHHcCCCCCC---CCCCCCCcHHHHHHHHHHHHHhhhhhccCCCCCCCcchh-
Q 044779 173 LAKLGIIDYSGGFVIHLSSGVAGFTAAYWVGPRATKD---RERFPPNNILLMLAGAGLLWMGWTGFNGGDPYNAGTDAS- 248 (477)
Q Consensus 173 L~~lG~~DfaG~~vVH~~gG~~aL~~a~~lG~R~g~~---~~~~~~hs~~~~~lGt~lLw~GW~gFN~gs~~~~~~~~~- 248 (477)
++++|++|||||++||++||++||++++++|||++|+ .++++|||+++++|||++||+||++||+||.+..+.+..
T Consensus 179 ~~~~gviDfAG~g~VHl~gG~agl~~a~~lGpR~~r~~~~~~~~~~hsv~~v~LGt~lLWfGWl~FN~GS~~~i~~~~~~ 258 (500)
T KOG0682|consen 179 LYKLGVIDFAGGGVVHLVGGVAGLVAALILGPRIGRFFGKAIALRPHSVTLVVLGTFLLWFGWLGFNGGSFYAINLRSWA 258 (500)
T ss_pred eeecceeeccCCceeEecccHHHHHHHHHhCCccCcccccccccCCCchhHHHHHHHHHHHHHHccCCcccccccchhHH
Confidence 9999999999999999999999999999999999973 367899999999999999999999999999999988887
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhCCCchhhhhhhhhccceeecCCCCCcchHHHHHHHHhhhhHHHHHHHHHhhhcCc
Q 044779 249 LAVLNTHVCTATSLLTWLILDILFFGKPSVIGATQGMITGLVCITPAAGVVQGWAAILMGMMSGSIPWYTMMVLHKKIPM 328 (477)
Q Consensus 249 ~a~~NT~la~a~g~lt~~~~~~~~~~k~s~~~~~nG~LaGlVaIta~~~~v~pw~A~iiG~vag~i~~~~~~~l~~~l~~ 328 (477)
|+++||+||++.+++||++++++++||||+..+|||+|+|||||||+|++++||+|+++|+++|++|+...++.++
T Consensus 259 ~a~vnT~Ls~a~gglt~~~~d~~~~~kwsv~~~cnG~laGlVaiT~gc~~v~pWaAiviG~va~~~~~~~~kL~~~---- 334 (500)
T KOG0682|consen 259 RAAVNTILSGATGGLTWLIIDYLRHGKWSVIGLCNGILAGLVAITPGCGVVEPWAAIVIGAVAGLVCNAANKLKER---- 334 (500)
T ss_pred HHHHHHHHHHhhhhhhhhhhhhhhcCCcchhhhHHHHHHHHHhhcCCCcccCcHHHHHHhHHHHHHHHHHHHHHHH----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988876665
Q ss_pred ccccccccCcccccccchhhhhhhhhhhcCccccchhcccCCcccccccccccccccccchhhHHHHHHHHHHHHHHHHH
Q 044779 329 LKRVDDTMAVFHTHAVAGSLGGILAGFFANPKLNRIFYLVDDWEHYIGLAYGFQSNRASAGFRQMGVQLLGISFVIALNI 408 (477)
Q Consensus 329 ~l~IDD~~~v~~vHg~~Gi~G~i~~glfa~~~~~~~~~~~~~~~~~~Gl~~g~~~~~~~~~~~ql~~Ql~g~~v~~~~s~ 408 (477)
+|||||+|++++||+||+||.|++++|+.++.....++.. ++..|+++++ +++||++|+++++++.+|++
T Consensus 335 -lkvDDpl~~f~~Hgv~G~wG~I~~glFa~~~v~~~~~~~~--~~~~G~~~~~-------~~kqLg~Qla~i~ai~~ws~ 404 (500)
T KOG0682|consen 335 -LKVDDPLDAFAVHGVGGIWGLIFTGLFAHDDVAAMDGTTI--ARISGLWMGH-------GFKQLGYQLAGILAIAAWSA 404 (500)
T ss_pred -hcCCcHHHHHHHhccccchhhheeeeeccCccccccCCCc--cCCCceeecc-------hHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999988765543321 1223787775 57999999999999999999
Q ss_pred HHHHHHHHHHHHhcC-CCCChHHHhcC-ChhhhchhcccccCCCC
Q 044779 409 FTTSVICVLIRIVVP-LRLTDEELQTG-DDAIHGEEAYALWGDGE 451 (477)
Q Consensus 409 ~~~~i~~~ilk~~~~-LRv~~e~E~~G-D~~~hg~~ay~~~~~~~ 451 (477)
++++++++++||+.+ ||+++|||+.| |..||||.+|+......
T Consensus 405 ~~t~iilf~l~kip~~LRvs~e~E~~G~D~~~hGe~ay~~~~~~~ 449 (500)
T KOG0682|consen 405 VVTFIILFLLNKIPLGLRVSEEEEELGMDATEHGEAAYDYHESTR 449 (500)
T ss_pred HHHHHHHHHHhhccceeecCHHHHhcCCCHhhhhhhhcchhhccc
Confidence 999999999999988 99999999999 99999999998654433
No 3
>PRK10666 ammonium transporter; Provisional
Probab=100.00 E-value=3e-104 Score=827.68 Aligned_cols=402 Identities=37% Similarity=0.602 Sum_probs=367.8
Q ss_pred cccccchhHHHHHHHHHHHHHhH-HHHHhhhhcccccccHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCcccccCcc
Q 044779 20 EWMSKADNAWQLTAATLVGLQSV-PGLVILYGSIVKKKWAVNSAFMALYAFAAVLVCWVGWGYQMSFGKKMIHFWGRPDV 98 (477)
Q Consensus 20 ~~~~~~d~~w~L~~~~lV~~~m~-~Gf~lleaG~vr~kn~~~~l~~~~~~~~v~~i~~~~~Gy~lafg~~~~~fiG~~~~ 98 (477)
+.+|+.|+.|+|+|++|| |+|| |||+|+|+|+||+||++|+++||++++++++++||++||+++||++ ++|+|+.++
T Consensus 25 ~~~~~~d~~w~l~~~~lV-~~M~~~Gfalle~G~vR~KN~~n~~~k~~~~~~~~~l~w~~~Gy~lafg~~-~~~iG~~~~ 102 (428)
T PRK10666 25 AVADKADNAFMMICTALV-LFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGYSLAFGEG-NAFFGNFNW 102 (428)
T ss_pred cccccccHHHHHHHHHHH-HHHHHhHHHHhhccccchhHHHHHHHHHHHHHHHHHHeeeeeeHHHHhCCC-CCcccChHH
Confidence 358899999999999999 9998 9999999999999999999999999999999999999999999975 578887655
Q ss_pred cccchhhcccccCCCccchhhhHhHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhcceeeeeecCcccccccCc
Q 044779 99 SLDENFLLSRAFAGYLPNATMVYFQFVFAAITLILIAGALLGRMNFHAWMLFVPLWLTFSYTIGAYSIWCPEGWLAKLGI 178 (477)
Q Consensus 99 ~~~~~~~~~~~~~~~i~~~~~~~fq~~Fa~~a~~I~sGavaeR~~~~~~~i~~~l~~~~vYp~~~hwvW~~~GwL~~lG~ 178 (477)
++..+...+ ...+++|...+++||++||+++++|++|+++||+|+.+|++|+++|++++|||++||+|+ +|||.++|+
T Consensus 103 ~~~~~~~~~-~~~~~~~~~~~~~FQ~~Faa~a~tIvsGavaER~~~~~~lif~~~~~~~vY~~vahWvW~-~GwL~~lG~ 180 (428)
T PRK10666 103 LMLKNIELT-AVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFSAVLIFVVVWLTLSYIPIAHMVWG-GGLLASDGA 180 (428)
T ss_pred hhhcCCCcc-cccccchhHHHHHHHHHHHHHHHHHHHhHhhccccHHHHHHHHHHHHHHHHHHhhhheeC-chhHhhcch
Confidence 443222111 113457788899999999999999999999999999999999999999999999999998 999999999
Q ss_pred eecCCCchhhhhHHHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHHHHHHHhhhhhccCCCCCCCcchhhHHHHHHHHH
Q 044779 179 IDYSGGFVIHLSSGVAGFTAAYWVGPRATKDRERFPPNNILLMLAGAGLLWMGWTGFNGGDPYNAGTDASLAVLNTHVCT 258 (477)
Q Consensus 179 ~DfaG~~vVH~~gG~~aL~~a~~lG~R~g~~~~~~~~hs~~~~~lGt~lLw~GW~gFN~gs~~~~~~~~~~a~~NT~la~ 258 (477)
+|||||++||++||++||++++++|||+++.+++++|||++++++|+++||+||+|||+||++..+.++.++++||++|+
T Consensus 181 ~DfAG~~vVH~~gG~~aL~~a~~lG~R~g~~~~~~~~hn~~~~~lGt~lLw~GW~gFN~Gs~~~~~~~a~~a~~nT~la~ 260 (428)
T PRK10666 181 LDFAGGTVVHINAAVAGLVGAYLLGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGAANEIAALAFVNTVVAT 260 (428)
T ss_pred hhhcccchhHHhHHHHHHHHHHHhcccCCCCCCCCCCCCHHHHHHHHHHHHHHHHhccchhhccccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999888899999999999999999999999999999988888999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCchhhhhhhhhccceeecCCCCCcchHHHHHHHHhhhhHHHHHHHHHhhhcCcccccccccCc
Q 044779 259 ATSLLTWLILDILFFGKPSVIGATQGMITGLVCITPAAGVVQGWAAILMGMMSGSIPWYTMMVLHKKIPMLKRVDDTMAV 338 (477)
Q Consensus 259 a~g~lt~~~~~~~~~~k~s~~~~~nG~LaGlVaIta~~~~v~pw~A~iiG~vag~i~~~~~~~l~~~l~~~l~IDD~~~v 338 (477)
++|+++|++++++++||+|+..+|||+|||||+|||+|++++||+|+++|++||++|+++.+++++| +|||||+|+
T Consensus 261 a~g~l~~~~~~~~~~gk~~~~~~~nG~LaGLVaITa~a~~v~p~~A~iiG~vag~v~~~~~~~l~~~----~~iDD~~~a 336 (428)
T PRK10666 261 AAAILGWVFGEWALRGKPSLLGACSGAIAGLVGVTPACGYVGVGGALIIGVVAGLAGLWGVTMLKRW----LRVDDPCDV 336 (428)
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHhhhhhhcccccccCCHHHHHHHHHHHHHHHHHHHHHHHhc----CCCCCCcCc
Confidence 9999999999999999999999999999999999999999999999999999999999999888765 899999999
Q ss_pred ccccccchhhhhhhhhhhcCccccchhcccCCcccccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044779 339 FHTHAVAGSLGGILAGFFANPKLNRIFYLVDDWEHYIGLAYGFQSNRASAGFRQMGVQLLGISFVIALNIFTTSVICVLI 418 (477)
Q Consensus 339 ~~vHg~~Gi~G~i~~glfa~~~~~~~~~~~~~~~~~~Gl~~g~~~~~~~~~~~ql~~Ql~g~~v~~~~s~~~~~i~~~il 418 (477)
+++||+||+||++++++|+.++.... | |.+. ..+.+|++.|++|++++++|+++.++++++++
T Consensus 337 ~~vHgv~Gi~G~l~~glfa~~~~~~~-----------~--~~~g----~~~~~ql~~Ql~g~~~~~~~~~~~t~ii~~il 399 (428)
T PRK10666 337 FGVHGVCGIVGCILTGIFAASSLGGV-----------G--YAEG----VTMGHQVLVQLESIAITIVWSGVVAFIGYKLA 399 (428)
T ss_pred cHhhhHhHHHHHHHHHHhhchhccCc-----------c--ccCc----cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998753211 1 1110 01238999999999999999999999999999
Q ss_pred HHhcCCCCChHHHhcC-Chhhhchhcccc
Q 044779 419 RIVVPLRLTDEELQTG-DDAIHGEEAYAL 446 (477)
Q Consensus 419 k~~~~LRv~~e~E~~G-D~~~hg~~ay~~ 446 (477)
|++.+||+++|||+.| |..||||++||+
T Consensus 400 ~~~~~lRvs~e~E~~GlD~~~hg~~ay~~ 428 (428)
T PRK10666 400 DLTVGLRVPEEQEREGLDVNSHGENAYNA 428 (428)
T ss_pred HhcccCcCCHHHHHhCCChhHhCccccCC
Confidence 9999999999999999 999999999974
No 4
>TIGR00836 amt ammonium transporter. The mechanism of energy coupling, if any, to methyl-NH2 or NH3 uptake by the AmtB protein of E. coli is not entirely clear. NH4+ uniport driven by the pmf, energy independent NH3 facilitation, and NH4+/K+ antiport have been proposed as possible transport mechanisms. In Corynebacterium glutamicum and Arabidopsis thaliana, uptake via the Amt1 homologues of AmtB has been reported to be driven by the pmf.
Probab=100.00 E-value=1.8e-102 Score=811.60 Aligned_cols=396 Identities=40% Similarity=0.720 Sum_probs=364.0
Q ss_pred hHHHHHHHHHHHHHhHHHHHhhhhcccccccHHHHHHHHHHHHHHHHHHHHHHhhhhhccC--CCCcccccCcccccchh
Q 044779 27 NAWQLTAATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVLVCWVGWGYQMSFGK--KMIHFWGRPDVSLDENF 104 (477)
Q Consensus 27 ~~w~L~~~~lV~~~m~~Gf~lleaG~vr~kn~~~~l~~~~~~~~v~~i~~~~~Gy~lafg~--~~~~fiG~~~~~~~~~~ 104 (477)
+.|+|+|++|| ++|||||+|+|+|+||+||++|+++||++++++++++||++||+++||+ +.++|+|...+++. +.
T Consensus 1 ~~w~l~~~~lV-~~M~~Gfalle~G~vr~kn~~n~l~k~~~~~~~~~i~~~~~Gy~lafg~~~~~~~~iG~~~~~~~-~~ 78 (403)
T TIGR00836 1 TAWLLIAAALV-FFMQPGFALLYAGLVRSKNVLNIMMKNLLDFAIGSLLWWLFGYSLAFGEDNPINGFIGTGGFGLK-NF 78 (403)
T ss_pred ChHHHHHHHHH-HHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHhhheehHHHHhCCCCCCCCCcCchHHhhc-cC
Confidence 57999999999 9999999999999999999999999999999999999999999999998 45789998743332 21
Q ss_pred hccc--ccCCCccchhhhHhHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhcceeeeeecCcccccccCceecC
Q 044779 105 LLSR--AFAGYLPNATMVYFQFVFAAITLILIAGALLGRMNFHAWMLFVPLWLTFSYTIGAYSIWCPEGWLAKLGIIDYS 182 (477)
Q Consensus 105 ~~~~--~~~~~i~~~~~~~fq~~Fa~~a~~I~sGavaeR~~~~~~~i~~~l~~~~vYp~~~hwvW~~~GwL~~lG~~Dfa 182 (477)
..++ ...+.+|+..+++||++||+++++|++|+++||+|+.+|++|+++|++++|||++||+|+++|||.++|++|||
T Consensus 79 ~~~~~~~~~~~~~~~~~~~fq~~Fa~~t~~I~sGavaeR~~~~~~~v~~~~~~~~vY~~~ahwvW~~~GwL~~lG~~DfA 158 (403)
T TIGR00836 79 LYPGKISLAGTLPDLLFFLFQMMFAAIAATIISGAVAERMKFSAYLLFSVLWTTLVYPPVAHWVWGGGGWLYKLGVLDFA 158 (403)
T ss_pred CcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccceeecCCchhhccCcchhc
Confidence 1111 11235788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhhhHHHHHHHHHHHHcCCCCCC--CCCCCCCcHHHHHHHHHHHHHhhhhhccCCCCCCCcchhhHHHHHHHHHHH
Q 044779 183 GGFVIHLSSGVAGFTAAYWVGPRATKD--RERFPPNNILLMLAGAGLLWMGWTGFNGGDPYNAGTDASLAVLNTHVCTAT 260 (477)
Q Consensus 183 G~~vVH~~gG~~aL~~a~~lG~R~g~~--~~~~~~hs~~~~~lGt~lLw~GW~gFN~gs~~~~~~~~~~a~~NT~la~a~ 260 (477)
||++||++||++||+++++||||++|+ +++++|||++++++|+++||+||+|||+||++..+.++.++++||++|+++
T Consensus 159 G~~vVH~~gG~~~L~~a~~LGpR~~r~~~~~~~~~~n~~~~~lGt~lLw~gW~gFN~Gs~~~~~~~~~~a~~nT~lA~a~ 238 (403)
T TIGR00836 159 GGGVVHIVGGVAGLAAALVLGPRIGRFPRPVAIRPHNVPLVVLGTFILWFGWFGFNAGSALAANGTAAYAAVNTNLAAAA 238 (403)
T ss_pred CceeEecchhHHHHHHHHHhcCCCCCCcCcCCCCCCCHHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998 678899999999999999999999999999988888899999999999999
Q ss_pred HHHHHHHHHHHhhCCCchhhhhhhhhccceeecCCCCCcchHHHHHHHHhhhhHHHHHHHHHhhhcCcccccccccCccc
Q 044779 261 SLLTWLILDILFFGKPSVIGATQGMITGLVCITPAAGVVQGWAAILMGMMSGSIPWYTMMVLHKKIPMLKRVDDTMAVFH 340 (477)
Q Consensus 261 g~lt~~~~~~~~~~k~s~~~~~nG~LaGlVaIta~~~~v~pw~A~iiG~vag~i~~~~~~~l~~~l~~~l~IDD~~~v~~ 340 (477)
|+++|++++++++||+|+..++||+|||||+|||+|++++||+|+++|+++|++|+++.+++++| +|||||||+++
T Consensus 239 g~l~~~~~~~~~~gk~~~~~~~nG~LAGLVaita~a~~v~p~~A~viG~iag~~~~~~~~~l~~~----~~iDD~~~~~~ 314 (403)
T TIGR00836 239 GGLTWLLIDWLKHGKPTLLGACNGILAGLVAITPGCGVVTPWGAIIIGLVAGVLCYLAVSKLKKK----LKIDDPLDAFA 314 (403)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHhhhhhhheeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH----cCCCCCcccch
Confidence 99999999999999999999999999999999999999999999999999999999999877765 89999999999
Q ss_pred ccccchhhhhhhhhhhcCccccchhcccCCcccccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044779 341 THAVAGSLGGILAGFFANPKLNRIFYLVDDWEHYIGLAYGFQSNRASAGFRQMGVQLLGISFVIALNIFTTSVICVLIRI 420 (477)
Q Consensus 341 vHg~~Gi~G~i~~glfa~~~~~~~~~~~~~~~~~~Gl~~g~~~~~~~~~~~ql~~Ql~g~~v~~~~s~~~~~i~~~ilk~ 420 (477)
+|++||+||++++++|++++.... .. |.++++ +++|++.|++|++++++|+++.++++++++|+
T Consensus 315 vHg~~Gi~G~i~~glfa~~~~~~~------~~---g~~~~~-------~~~~l~~Ql~g~~~~~~~s~~~~~ii~~il~~ 378 (403)
T TIGR00836 315 VHGVGGIWGLIATGLFAAPKVGGV------GT---GGLLGG-------NGKQLGVQLIGIAAIIAWAFVVTFIILKILDK 378 (403)
T ss_pred hhhhhHHHHHHHHHHhcccccccc------cC---CccccC-------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999998754321 11 344443 45999999999999999999999999999999
Q ss_pred hcCCCCChHHHhcC-Chhhhchhcc
Q 044779 421 VVPLRLTDEELQTG-DDAIHGEEAY 444 (477)
Q Consensus 421 ~~~LRv~~e~E~~G-D~~~hg~~ay 444 (477)
+.+||+++|||+.| |..||||++|
T Consensus 379 ~~~lRv~~e~E~~GlD~~~hg~~ay 403 (403)
T TIGR00836 379 TIGLRVSEEEEKIGLDLAEHGEFAY 403 (403)
T ss_pred cccccCCHHHHHhCCChhhhCcccC
Confidence 99999999999999 9999999998
No 5
>TIGR03644 marine_trans_1 probable ammonium transporter, marine subtype. Members of this protein family are well conserved subclass of putative ammonimum transporters, belonging to the much broader set of ammonium/methylammonium transporter described by TIGR00836. Species with this transporter tend to be marine bacteria. Partial phylogenetic profiling (PPP) picks a member of this protein family as the single best-scoring protein vs. a reference profile for the marine environment Genome Property for a large number of different query genomes. This finding by PPP suggests that this transporter family represents an important adaptation to the marine environment.
Probab=100.00 E-value=1.1e-100 Score=797.16 Aligned_cols=384 Identities=27% Similarity=0.466 Sum_probs=348.9
Q ss_pred cchhHHHHHHHHHHHHHhHHHHHhhhhcccccccHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCC---CcccccCcccc
Q 044779 24 KADNAWQLTAATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVLVCWVGWGYQMSFGKKM---IHFWGRPDVSL 100 (477)
Q Consensus 24 ~~d~~w~L~~~~lV~~~m~~Gf~lleaG~vr~kn~~~~l~~~~~~~~v~~i~~~~~Gy~lafg~~~---~~fiG~~~~~~ 100 (477)
..|+.|+|+|++|| |+|||||+|+|+|+||+||++|+++||++++++++++||++||+++||++. ++++|.. ..
T Consensus 2 ~~d~~w~l~~~~LV-~~M~~Gfalle~G~vr~Kn~~n~l~k~~~~~~~~~l~w~~~Gy~lafg~~~~~~~g~~g~f--~~ 78 (404)
T TIGR03644 2 ALDTFYFLISGALV-MWMAAGFAMLEAGLVRSKNTTEILTKNIALFAIACIMYLLVGYNIMYPGGGIFLGGILGSF--LL 78 (404)
T ss_pred cccHHHHHHHHHHH-HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCcccCCcchhh--hh
Confidence 36999999999999 999999999999999999999999999999999999999999999999763 3344421 11
Q ss_pred cc-hhhcc---c-ccCCCccchhhhHhHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhcceeeeeecCcccccc
Q 044779 101 DE-NFLLS---R-AFAGYLPNATMVYFQFVFAAITLILIAGALLGRMNFHAWMLFVPLWLTFSYTIGAYSIWCPEGWLAK 175 (477)
Q Consensus 101 ~~-~~~~~---~-~~~~~i~~~~~~~fq~~Fa~~a~~I~sGavaeR~~~~~~~i~~~l~~~~vYp~~~hwvW~~~GwL~~ 175 (477)
.. +...+ + .....+|...+++||++||+++++|++|+++||+|+.+|++|+++|++++|||++||+|+ +|||.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~Fq~~Fa~~a~~IvsGavaeR~~~~~~~v~~~~~~~~vY~~~ahW~W~-~GwL~~ 157 (404)
T TIGR03644 79 GADNPVGDLIAGFEGDADYSSGSDFFFQVVFVATAMSIVSGAVAERMKLWPFLLFAVVLTGFIYPIEGSWTWG-GGWLDD 157 (404)
T ss_pred cccccccccccccccccCccHHHHHHHHHHHHHHHHHHHHhHhhhcccHHHHHHHHHHHHHHHHhhhhhheeC-chHHhh
Confidence 00 00000 1 112346777889999999999999999999999999999999999999999999999998 899999
Q ss_pred cCceecCCCchhhhhHHHHHHHHHHHHcCCCCCCC-----CCCCCCcHHHHHHHHHHHHHhhhhhccCCCCCCCc-----
Q 044779 176 LGIIDYSGGFVIHLSSGVAGFTAAYWVGPRATKDR-----ERFPPNNILLMLAGAGLLWMGWTGFNGGDPYNAGT----- 245 (477)
Q Consensus 176 lG~~DfaG~~vVH~~gG~~aL~~a~~lG~R~g~~~-----~~~~~hs~~~~~lGt~lLw~GW~gFN~gs~~~~~~----- 245 (477)
+|++|||||++||++||++||+++++||||++|++ +++||||++++++|+++||+||+|||+||++..+.
T Consensus 158 lG~~DfAG~~vVH~~gG~~aL~~a~~LgpR~gr~~~~~~~~~~~~~n~~~~~lG~~iLw~gW~gFN~gs~l~~~~~~~~~ 237 (404)
T TIGR03644 158 LGFSDFAGSGIVHMAGAAAALAGVLLLGPRKGKYGKNGEVNPIPGSNLPLATLGTFILWMGWFGFNGGSQLALSDVADAN 237 (404)
T ss_pred cCchhhcCceEEecchHHHHHHHHheeccCCCCCccCCCcCCCCCCCHHHHHHHHHHHHHHHHhhcchhhhhcccccchH
Confidence 99999999999999999999999999999999863 25789999999999999999999999999877653
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhCCCchhhhhhhhhccceeecCCCCCcchHHHHHHHHhhhhHHHHHHHHHhhh
Q 044779 246 DASLAVLNTHVCTATSLLTWLILDILFFGKPSVIGATQGMITGLVCITPAAGVVQGWAAILMGMMSGSIPWYTMMVLHKK 325 (477)
Q Consensus 246 ~~~~a~~NT~la~a~g~lt~~~~~~~~~~k~s~~~~~nG~LaGlVaIta~~~~v~pw~A~iiG~vag~i~~~~~~~l~~~ 325 (477)
.+.++++||++|+++|+++|++++++++||+|+..++||+|||||+|||+|++++||+|++||+++|++|+++.++++|
T Consensus 238 ~~~~a~~NT~la~a~g~l~~~~~~~~~~gk~~~~~~~nG~LAGLVaITa~~~~v~p~~A~iiG~iag~v~~~~~~~~~~- 316 (404)
T TIGR03644 238 AVARIFANTNAAAAGGAIAALLLTKLLFGKADLTMVLNGALAGLVAITAEPLTPSPLAATLIGAVGGVIVVFSIVLLDK- 316 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhhhhhhccccCCCCHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 3589999999999999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred cCcccccccccCcccccccchhhhhhhhhhhcCccccchhcccCCcccccccccccccccccchhhHHHHHHHHHHHHHH
Q 044779 326 IPMLKRVDDTMAVFHTHAVAGSLGGILAGFFANPKLNRIFYLVDDWEHYIGLAYGFQSNRASAGFRQMGVQLLGISFVIA 405 (477)
Q Consensus 326 l~~~l~IDD~~~v~~vHg~~Gi~G~i~~glfa~~~~~~~~~~~~~~~~~~Gl~~g~~~~~~~~~~~ql~~Ql~g~~v~~~ 405 (477)
+|||||||++++||+||+||++++++|+. . +|++.|++|++++++
T Consensus 317 ----~~iDD~~~~~~vHg~~Gi~G~i~~glf~~-----------------------------~--~~l~~Ql~g~~~~~~ 361 (404)
T TIGR03644 317 ----LKIDDPVGAISVHGVAGIWGTLVVPITNG-----------------------------D--ASFGAQLIGAATIFA 361 (404)
T ss_pred ----CCCCCCcCchHhhhHHHHHHHHHHHHhcc-----------------------------c--hHHHHHHHHHHHHHH
Confidence 89999999999999999999999999852 1 689999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCChHHHhcC-Chhhhchhccccc
Q 044779 406 LNIFTTSVICVLIRIVVPLRLTDEELQTG-DDAIHGEEAYALW 447 (477)
Q Consensus 406 ~s~~~~~i~~~ilk~~~~LRv~~e~E~~G-D~~~hg~~ay~~~ 447 (477)
|+++.++++++++|++.+||+++|+|++| |..||||++|||+
T Consensus 362 ~~~~~s~~~~~il~~~~~lRv~~e~E~~GlD~~~hg~~ay~e~ 404 (404)
T TIGR03644 362 WVFVTSLIVWFILKATMGIRVSEEEEYEGLDIAECGMEAYPEF 404 (404)
T ss_pred HHHHHHHHHHHHHHhcccccCCHHHHHcCCCHHHhCcccCCCC
Confidence 99999999999999999999999999999 9999999999874
No 6
>PF00909 Ammonium_transp: Ammonium Transporter Family; InterPro: IPR024041 This ammonium transporter domain consists of a duplication of 2 structural repeats of five helices each plus one extra C-terminal helix. It has been described as a channel that spans the membrane 11 times [].; PDB: 3B9Z_A 3B9Y_A 3B9W_A 3BHS_A 2B2H_A 2B2J_A 2B2F_A 2B2I_A 2NPG_A 2NUU_E ....
Probab=100.00 E-value=3.5e-94 Score=752.86 Aligned_cols=391 Identities=38% Similarity=0.687 Sum_probs=342.0
Q ss_pred HHHHHHHHHHHHHhHHHHHhhhhcccccccHHHHHHHHHHHHHHHHHHHHHHhhhhhccCC--CCcccccCcccccchhh
Q 044779 28 AWQLTAATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVLVCWVGWGYQMSFGKK--MIHFWGRPDVSLDENFL 105 (477)
Q Consensus 28 ~w~L~~~~lV~~~m~~Gf~lleaG~vr~kn~~~~l~~~~~~~~v~~i~~~~~Gy~lafg~~--~~~fiG~~~~~~~~~~~ 105 (477)
+|+++|+++| ++||+||+++|+|.+|+||+.|+++|++.++++++++|+++||+++|+++ .++++|+..... ..
T Consensus 1 ~w~l~~~~lv-~~m~~G~~~l~~G~vr~kn~~~~~~~~~~~~~~~~~~~~~~Gf~lafg~~~~~~~~~g~~~~~~-~~-- 76 (399)
T PF00909_consen 1 AWLLLCAFLV-FLMQPGFALLEAGLVRSKNAVNILYKNLIDVAVVVMIWFLFGFSLAFGKRYGFSGFIGNLGFSA-FG-- 76 (399)
T ss_dssp HHHHHHHHHH-HHHCCHHHHHHHCCS-GGGHHHHHHHHHHHHHHHHHHHHHCHHHHHHSTT-HHHHHHHHHCHHH-HH--
T ss_pred CHHHHHHHHH-HHhhccHHHhhCCCcCchHHHHHHHHHHHHHHHHHHHHHhhhhheeecCCcccCceeecccccc-cc--
Confidence 5999999999 99999999999999999999999999999999999999999999999998 456777632111 00
Q ss_pred cccccCCCccchhhhHhHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhcceeeeeecCcccccccCce-ecCCC
Q 044779 106 LSRAFAGYLPNATMVYFQFVFAAITLILIAGALLGRMNFHAWMLFVPLWLTFSYTIGAYSIWCPEGWLAKLGII-DYSGG 184 (477)
Q Consensus 106 ~~~~~~~~i~~~~~~~fq~~Fa~~a~~I~sGavaeR~~~~~~~i~~~l~~~~vYp~~~hwvW~~~GwL~~lG~~-DfaG~ 184 (477)
....+++...+++||++||+++++|++|+++||+|+.+|++++++|+.++||+++||+|+++|||.++|++ ||+||
T Consensus 77 ---~~~~~~~~~~~~~fq~~fa~~~~~I~sgavaeR~~~~~~ii~~~l~~~~vy~~~~~w~w~~~Gwl~~~g~~~DfaG~ 153 (399)
T PF00909_consen 77 ---FQWANIPQGVFFLFQLAFAAIAATIVSGAVAERIKFSAYIIFGFLWGGLVYPPLAHWVWGENGWLAQLGFLIDFAGS 153 (399)
T ss_dssp ---HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCTHHHHHHHHHCHCHHHHHCCHH--TT-T
T ss_pred ---chhccccccchhhhhhccceEEEccccceeeceeeehHHHHHHHHHhhhhccccceEEEecchhhccCccCCCCccc
Confidence 01223566678999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred chhhhhHHHHHHHHHHHHcCCCCCC---CCCCCCCcHHHHHHHHHHHHHhhhhhccCCCCCCCcchhh-HHHHHHHHHHH
Q 044779 185 FVIHLSSGVAGFTAAYWVGPRATKD---RERFPPNNILLMLAGAGLLWMGWTGFNGGDPYNAGTDASL-AVLNTHVCTAT 260 (477)
Q Consensus 185 ~vVH~~gG~~aL~~a~~lG~R~g~~---~~~~~~hs~~~~~lGt~lLw~GW~gFN~gs~~~~~~~~~~-a~~NT~la~a~ 260 (477)
++||++||++||++++++|||++|+ +++++|||++++++|+++||+||+|||+||++..++++.. +++||++|+++
T Consensus 154 ~vVH~~gG~~gL~~a~~lg~R~~~~~~~~~~~~~~s~~~~~lG~~lLw~gW~gFN~gs~~~~~~~~~~~~~~nT~la~a~ 233 (399)
T PF00909_consen 154 GVVHLFGGVFGLAAAIVLGPRRGRFDGKPNPIPPHSPPLAMLGTLLLWFGWFGFNAGSALAANGRAWLRAAVNTLLAAAA 233 (399)
T ss_dssp TTTHHHHHHHHHHHHHHH--CTTTTGTTTSS--HCHHHHHHHHHHHHHHHHHHHHHCCGSSSSHHHHH-HHHHHHHHHHH
T ss_pred eeeehhhhHHHHhhheeeCCCCCcccccccCCCCCcHHHhhhhHHHHHHHhcccccccccccCCccchhhhhhhhhhHHH
Confidence 9999999999999999999999997 6788999999999999999999999999999998887776 99999999999
Q ss_pred HHHHHHHHHHHhhCCCchhhhhhhhhccceeecCCCCCcchHHHHHHHHhhhhHHHHHHHHHhhhcCcccccccccCccc
Q 044779 261 SLLTWLILDILFFGKPSVIGATQGMITGLVCITPAAGVVQGWAAILMGMMSGSIPWYTMMVLHKKIPMLKRVDDTMAVFH 340 (477)
Q Consensus 261 g~lt~~~~~~~~~~k~s~~~~~nG~LaGlVaIta~~~~v~pw~A~iiG~vag~i~~~~~~~l~~~l~~~l~IDD~~~v~~ 340 (477)
|+++|++++++++||+|+..++||+|||||||||+|++++||+|+++|+++|.+++++++++++| +|||||+|+++
T Consensus 234 g~l~~~~~~~~~~gk~~~~~~~nG~laGlVaita~~~~v~p~~A~~iG~iag~i~~~~~~~l~~~----~~iDD~~~~~~ 309 (399)
T PF00909_consen 234 GGLTWLLISYLLSGKWSMVGICNGALAGLVAITAGAGYVTPWGALLIGAIAGLISYFGVSWLLKR----LKIDDPVGAFA 309 (399)
T ss_dssp HHHHHHHHHHHHCSS--HHHHHHHHHHHHHHHTTTTTTS-HHHHHHHHHHHHHHHHHHHHHHHHH----HTS-HTTGHHH
T ss_pred HHHHHHHhhhccccccchhhhhhhhhhhhhheecccCCCcHHHHHHhhhhHhhhhhhheecccce----eEeccccceEe
Confidence 99999999999999999999999999999999999999999999999999999999999866655 89999999999
Q ss_pred ccccchhhhhhhhhhhcCccccchhcccCCcccccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044779 341 THAVAGSLGGILAGFFANPKLNRIFYLVDDWEHYIGLAYGFQSNRASAGFRQMGVQLLGISFVIALNIFTTSVICVLIRI 420 (477)
Q Consensus 341 vHg~~Gi~G~i~~glfa~~~~~~~~~~~~~~~~~~Gl~~g~~~~~~~~~~~ql~~Ql~g~~v~~~~s~~~~~i~~~ilk~ 420 (477)
+||+||+||++++++|+.++... .+... +++|+ +.+|+++|+++++++++|++++++++++++|+
T Consensus 310 vHg~~Gi~G~i~~glfa~~~~~~----~~~~~---~~~~~--------~~~~l~~Ql~g~~~~~~~~~~~s~i~~~~l~~ 374 (399)
T PF00909_consen 310 VHGVGGIWGTILTGLFASPEVNY----SDGYG---GLFYG--------NGRQLGIQLLGIVVILAWSFVVSYIIFKILKK 374 (399)
T ss_dssp HCHHHHHHHHHHHHHHCCCHHCS----S-SST---THHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeccHHHHHHHHHHHhcccccc----ccccc---cccCC--------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999887431 01112 56666 23999999999999999999999999999999
Q ss_pred hcCCCCChHHHhcC-Chhhhchhcc
Q 044779 421 VVPLRLTDEELQTG-DDAIHGEEAY 444 (477)
Q Consensus 421 ~~~LRv~~e~E~~G-D~~~hg~~ay 444 (477)
+.+||+++|+|++| |..||||+||
T Consensus 375 ~~~LRv~~~~E~~GlD~~~hg~~aY 399 (399)
T PF00909_consen 375 FGGLRVSEEDERVGLDLSEHGEEAY 399 (399)
T ss_dssp HT-SB--HHHHHH-HHHHHHS--SB
T ss_pred ccccCCCHHHHhhCCCHHHhCcCcC
Confidence 99999999999999 9999999998
No 7
>KOG3796 consensus Ammonium transporter RHBG [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=100.00 E-value=1.7e-50 Score=402.44 Aligned_cols=383 Identities=20% Similarity=0.304 Sum_probs=311.5
Q ss_pred HHHHHhHHHHHhhhhcccccc----------cHHHHHHHHHHHHHHH-HHHHHHHhhhhhccCCCCcccccCccccc---
Q 044779 36 LVGLQSVPGLVILYGSIVKKK----------WAVNSAFMALYAFAAV-LVCWVGWGYQMSFGKKMIHFWGRPDVSLD--- 101 (477)
Q Consensus 36 lV~~~m~~Gf~lleaG~vr~k----------n~~~~l~~~~~~~~v~-~i~~~~~Gy~lafg~~~~~fiG~~~~~~~--- 101 (477)
|+++++|.-|+++++-+||++ +..|-+...+..++++ +++|..+||.++|-+++ +|.....+++.
T Consensus 15 l~~l~lq~~~ivLF~~fv~Yd~~al~~~t~~~~~~~~~~~Yp~fQDvhvMifiGfGFLmtflrRy-gfSsV~fnlllaA~ 93 (442)
T KOG3796|consen 15 LWALLLQAAFIVLFALFVHYDADALEWDTKRYDQKGLVASYPLFQDVHVMIFIGFGFLMTFLRRY-GFSSVGFNLLLAAL 93 (442)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccccccccccchhhccccccceeehhhhhHHHHHHHHHHc-cchHHHHHHHHHHH
Confidence 444778899999999999985 3445667789999999 99999999999999886 55555444331
Q ss_pred --------chhhcccccCCCccchhhhHhHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhcceeeeeecCcccc
Q 044779 102 --------ENFLLSRAFAGYLPNATMVYFQFVFAAITLILIAGALLGRMNFHAWMLFVPLWLTFSYTIGAYSIWCPEGWL 173 (477)
Q Consensus 102 --------~~~~~~~~~~~~i~~~~~~~fq~~Fa~~a~~I~sGavaeR~~~~~~~i~~~l~~~~vYp~~~hwvW~~~GwL 173 (477)
.++ ....+++++...++.+..+.||+.++.|..||+.+|+++.|+++++ ++++.++..++|-+-
T Consensus 94 ~vQWaiL~~G~-~~~~~~gk~~i~le~ii~Ad~saa~vLIS~gAvLGk~sp~QlliM~-~fEv~~~~~~e~v~~------ 165 (442)
T KOG3796|consen 94 GVQWAILLDGF-LSQFPGGKFVIGLESIILADFSAASVLISMGAVLGKVSPAQLLIMA-LFEVTAFGINEMVIS------ 165 (442)
T ss_pred HHHHHHHHHHH-HHhCCCCeEEEEeHHHhhhhHhHhHHhhhhchhhcCCCHHHHHHHH-HHHHHHHHHHHHHHH------
Confidence 111 1222356677677888999999999999999999999999999995 789999999888773
Q ss_pred cccCceecCCCchhhhhHHHHHHHHHHHHcCCCCC---CCCCCCCCcHHHHHHHHHHHHHhhhhhccCCCCCCCcchhhH
Q 044779 174 AKLGIIDYSGGFVIHLSSGVAGFTAAYWVGPRATK---DRERFPPNNILLMLAGAGLLWMGWTGFNGGDPYNAGTDASLA 250 (477)
Q Consensus 174 ~~lG~~DfaG~~vVH~~gG~~aL~~a~~lG~R~g~---~~~~~~~hs~~~~~lGt~lLw~GW~gFN~gs~~~~~~~~~~a 250 (477)
..+++.|.+|++.||.+|+++||++++++.|+..+ +++...+|++.++++||++||+.||+||+..+. .++.+.||
T Consensus 166 n~~~v~d~g~smtih~FgAYFGLavA~~l~k~~~~~~~~~~gs~y~sdLfAMIGtlFLWmfWPSFNsal~~-~~~~r~rA 244 (442)
T KOG3796|consen 166 NIFNVNDHGGSMTIHAFGAYFGLAVAWCLYKPNLEGTTENEGSAYHSDLFAMIGTLFLWMFWPSFNSALAR-SGDARHRA 244 (442)
T ss_pred HhccccccCCceEEEehhhhhhhhHhhhccCccccccccccCceecchHHHHHHHHHHHHhccccchhhhc-CchhhHHH
Confidence 36889999999999999999999999999887765 345667899999999999999999999997543 34667999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh--hCCCchhhhhhhhhccceeecCCCC-CcchHHHHHHHHhhhhHHHHHHHHHhhhcC
Q 044779 251 VLNTHVCTATSLLTWLILDILF--FGKPSVIGATQGMITGLVCITPAAG-VVQGWAAILMGMMSGSIPWYTMMVLHKKIP 327 (477)
Q Consensus 251 ~~NT~la~a~g~lt~~~~~~~~--~~k~s~~~~~nG~LaGlVaIta~~~-~v~pw~A~iiG~vag~i~~~~~~~l~~~l~ 327 (477)
++||++|.|+|.+|++.++.+. +||.|+++++|.+|||.|||..+|+ ..+||.|++||++||.++..+++++.++++
T Consensus 245 i~NTy~slAa~tvTtf~~Sslv~~~gkldMvhIqnatLAGGVAVGTsa~~~l~P~~AmiiG~iAG~vSvlG~kyltp~l~ 324 (442)
T KOG3796|consen 245 IFNTYLSLAASTVTTFAVSSLVHPQGKLDMVHIQNATLAGGVAVGTSANLILSPYGAMIIGLIAGLVSVLGYKYLTPFLE 324 (442)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhcccCccceEEeecchhcCceeeccchhcccCcHHHHHHHHHHHHHhhccceeechhhc
Confidence 9999999999999999999875 6799999999999999999999999 889999999999999999999999999999
Q ss_pred cccccccccCcccccccchhhhhhhhhhhcCccccchhcccCCcccccccccccccccccchhhHHHHHHHHHHHHHHHH
Q 044779 328 MLKRVDDTMAVFHTHAVAGSLGGILAGFFANPKLNRIFYLVDDWEHYIGLAYGFQSNRASAGFRQMGVQLLGISFVIALN 407 (477)
Q Consensus 328 ~~l~IDD~~~v~~vHg~~Gi~G~i~~glfa~~~~~~~~~~~~~~~~~~Gl~~g~~~~~~~~~~~ql~~Ql~g~~v~~~~s 407 (477)
.++||+|+|++.+.||+||++|.++...++.-.... .|+. ...+..-+ -++...++. -.|...|+.|+.+++..+
T Consensus 325 ~~l~i~dtcgv~nlhgmpg~l~~~~~i~~a~~~t~e-~yg~-~l~~ifp~-~~gng~~~~--~sQa~~Ql~gl~~~l~~A 399 (442)
T KOG3796|consen 325 RKLGIHDTCGVHNLHGMPGLLGGIASIVFAVLATPE-SYGK-GLYHIFPM-IGGNGHGMA--TSQALYQLFGLLVTLVIA 399 (442)
T ss_pred ccccccccccccccccchHHHHHHHHHHHHhhcchh-hccc-ccccccce-ecCCCccch--hHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999886322100 0000 00000000 011001122 379999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCChHHHhcC
Q 044779 408 IFTTSVICVLIRIVVPLRLTDEELQTG 434 (477)
Q Consensus 408 ~~~~~i~~~ilk~~~~LRv~~e~E~~G 434 (477)
.+.++++..+||. .-+|.++|+|...
T Consensus 400 ~~gGlLtGllLkl-~~w~qp~d~~~~~ 425 (442)
T KOG3796|consen 400 LVGGLLTGLLLKL-KIWDQPSDDEYYD 425 (442)
T ss_pred HHhhhhhhheeec-cccCCCChhhhcc
Confidence 9999999999993 3388888887443
No 8
>PF00909 Ammonium_transp: Ammonium Transporter Family; InterPro: IPR024041 This ammonium transporter domain consists of a duplication of 2 structural repeats of five helices each plus one extra C-terminal helix. It has been described as a channel that spans the membrane 11 times [].; PDB: 3B9Z_A 3B9Y_A 3B9W_A 3BHS_A 2B2H_A 2B2J_A 2B2F_A 2B2I_A 2NPG_A 2NUU_E ....
Probab=82.36 E-value=18 Score=38.40 Aligned_cols=145 Identities=19% Similarity=0.153 Sum_probs=91.0
Q ss_pred cccccccchhHHHHHHHHHHHHHhHHHHHhhhhcccccccHHH---HHHHHHHHHHHHHHHHHHHhhhhhccCCCCcccc
Q 044779 18 SPEWMSKADNAWQLTAATLVGLQSVPGLVILYGSIVKKKWAVN---SAFMALYAFAAVLVCWVGWGYQMSFGKKMIHFWG 94 (477)
Q Consensus 18 ~~~~~~~~d~~w~L~~~~lV~~~m~~Gf~lleaG~vr~kn~~~---~l~~~~~~~~v~~i~~~~~Gy~lafg~~~~~fiG 94 (477)
.++...+-|..+.++.+.++ ++ |..-|.+|.....|... ++++.+++.+.+.+.|.++.|-.. ++
T Consensus 181 ~~~~~~~~s~~~~~lG~~lL-w~---gW~gFN~gs~~~~~~~~~~~~~~nT~la~a~g~l~~~~~~~~~~-gk------- 248 (399)
T PF00909_consen 181 KPNPIPPHSPPLAMLGTLLL-WF---GWFGFNAGSALAANGRAWLRAAVNTLLAAAAGGLTWLLISYLLS-GK------- 248 (399)
T ss_dssp TTSS--HCHHHHHHHHHHHH-HH---HHHHHHHCCGSSSSHHHHH-HHHHHHHHHHHHHHHHHHHHHHHC-SS-------
T ss_pred cccCCCCCcHHHhhhhHHHH-HH---HhcccccccccccCCccchhhhhhhhhhHHHHHHHHHHhhhccc-cc-------
Confidence 34555667777888877655 54 45556677777666554 456677888888888877755433 11
Q ss_pred cCcccccchhhcccccCCCccchhhhHhHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhcceeeeeecCccccc
Q 044779 95 RPDVSLDENFLLSRAFAGYLPNATMVYFQFVFAAITLILIAGALLGRMNFHAWMLFVPLWLTFSYTIGAYSIWCPEGWLA 174 (477)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~i~~~~~~~fq~~Fa~~a~~I~sGavaeR~~~~~~~i~~~l~~~~vYp~~~hwvW~~~GwL~ 174 (477)
. ....+.+.+.|. .+...+-+.=.++.+-++.. +.++.++....+|. ++
T Consensus 249 -------------------~--~~~~~~nG~laG---lVaita~~~~v~p~~A~~iG-~iag~i~~~~~~~l------~~ 297 (399)
T PF00909_consen 249 -------------------W--SMVGICNGALAG---LVAITAGAGYVTPWGALLIG-AIAGLISYFGVSWL------LK 297 (399)
T ss_dssp -----------------------HHHHHHHHHHH---HHHHTTTTTTS-HHHHHHHH-HHHHHHHHHHHHHH------HH
T ss_pred -------------------c--chhhhhhhhhhh---hhheecccCCCcHHHHHHhh-hhHhhhhhhheecc------cc
Confidence 0 011223333333 33334445667788877775 44555555433322 46
Q ss_pred ccCceecCCCchhhhhHHHHHHHHHHHHcCC
Q 044779 175 KLGIIDYSGGFVIHLSSGVAGFTAAYWVGPR 205 (477)
Q Consensus 175 ~lG~~DfaG~~vVH~~gG~~aL~~a~~lG~R 205 (477)
++++.|.-+...||..+|+.|...+-+.-.+
T Consensus 298 ~~~iDD~~~~~~vHg~~Gi~G~i~~glfa~~ 328 (399)
T PF00909_consen 298 RLKIDDPVGAFAVHGVGGIWGTILTGLFASP 328 (399)
T ss_dssp HHTS-HTTGHHHHCHHHHHHHHHHHHHHCCC
T ss_pred eeEeccccceEeeeeccHHHHHHHHHHHhcc
Confidence 8899999999999999999999999777554
No 9
>TIGR00836 amt ammonium transporter. The mechanism of energy coupling, if any, to methyl-NH2 or NH3 uptake by the AmtB protein of E. coli is not entirely clear. NH4+ uniport driven by the pmf, energy independent NH3 facilitation, and NH4+/K+ antiport have been proposed as possible transport mechanisms. In Corynebacterium glutamicum and Arabidopsis thaliana, uptake via the Amt1 homologues of AmtB has been reported to be driven by the pmf.
Probab=65.18 E-value=1.6e+02 Score=31.57 Aligned_cols=143 Identities=13% Similarity=0.027 Sum_probs=82.9
Q ss_pred cccccchhHHHHHHHHHHHHHhHHHHHhhhhcccccc--cHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCcccccCc
Q 044779 20 EWMSKADNAWQLTAATLVGLQSVPGLVILYGSIVKKK--WAVNSAFMALYAFAAVLVCWVGWGYQMSFGKKMIHFWGRPD 97 (477)
Q Consensus 20 ~~~~~~d~~w~L~~~~lV~~~m~~Gf~lleaG~vr~k--n~~~~l~~~~~~~~v~~i~~~~~Gy~lafg~~~~~fiG~~~ 97 (477)
+...+.+..+.++.+.+. ++- ..-|.+|....- .+..++++.+++.+.+.+.|.++-|.. .++-. ..
T Consensus 189 ~~~~~~n~~~~~lGt~lL-w~g---W~gFN~Gs~~~~~~~~~~a~~nT~lA~a~g~l~~~~~~~~~-~gk~~--~~---- 257 (403)
T TIGR00836 189 VAIRPHNVPLVVLGTFIL-WFG---WFGFNAGSALAANGTAAYAAVNTNLAAAAGGLTWLLIDWLK-HGKPT--LL---- 257 (403)
T ss_pred CCCCCCCHHHHHHHHHHH-HHH---HhcccchhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCC--HH----
Confidence 345566677777777655 554 444566665433 334567777888888899998876532 22110 00
Q ss_pred ccccchhhcccccCCCccchhhhHhHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhcceeeeeecCcccccccC
Q 044779 98 VSLDENFLLSRAFAGYLPNATMVYFQFVFAAITLILIAGALLGRMNFHAWMLFVPLWLTFSYTIGAYSIWCPEGWLAKLG 177 (477)
Q Consensus 98 ~~~~~~~~~~~~~~~~i~~~~~~~fq~~Fa~~a~~I~sGavaeR~~~~~~~i~~~l~~~~vYp~~~hwvW~~~GwL~~lG 177 (477)
.+.+ .+.+-.....+-++-.++.+-++..+ .+++++....++ ..++++
T Consensus 258 ----------------------~~~n---G~LAGLVaita~a~~v~p~~A~viG~-iag~~~~~~~~~------l~~~~~ 305 (403)
T TIGR00836 258 ----------------------GACN---GILAGLVAITPGCGVVTPWGAIIIGL-VAGVLCYLAVSK------LKKKLK 305 (403)
T ss_pred ----------------------HHHh---hhhhhheeecCCCCCCCHHHHHHHHH-HHHHHHHHHHHH------HHHHcC
Confidence 0001 11121222222234455666556543 344443332221 235789
Q ss_pred ceecCCCchhhhhHHHHHHHHHHHHcCC
Q 044779 178 IIDYSGGFVIHLSSGVAGFTAAYWVGPR 205 (477)
Q Consensus 178 ~~DfaG~~vVH~~gG~~aL~~a~~lG~R 205 (477)
+.|--+...||..+|+.|...+-++.++
T Consensus 306 iDD~~~~~~vHg~~Gi~G~i~~glfa~~ 333 (403)
T TIGR00836 306 IDDPLDAFAVHGVGGIWGLIATGLFAAP 333 (403)
T ss_pred CCCCcccchhhhhhHHHHHHHHHHhccc
Confidence 9999999999999999999888777643
No 10
>PRK11624 cdsA CDP-diglyceride synthase; Provisional
Probab=55.99 E-value=13 Score=37.67 Aligned_cols=86 Identities=13% Similarity=0.025 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHhhC-----CCchhhhhhhhhccceeecCCCC--------CcchHHHHHHHHhhhhHHHHHHHHHh
Q 044779 257 CTATSLLTWLILDILFFG-----KPSVIGATQGMITGLVCITPAAG--------VVQGWAAILMGMMSGSIPWYTMMVLH 323 (477)
Q Consensus 257 a~a~g~lt~~~~~~~~~~-----k~s~~~~~nG~LaGlVaIta~~~--------~v~pw~A~iiG~vag~i~~~~~~~l~ 323 (477)
..-++=..+++.-+...| |.|+...-+|.++|+++.+-.+. ..+++..+++|++.++.+.++- ..|
T Consensus 160 ~vw~sDt~AYf~Gr~fGk~KL~P~ISPkKTwEG~iGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GD-L~E 238 (285)
T PRK11624 160 LVWGADSGAYMFGKLFGKHKLAPKVSPGKTWEGFIGGLATAAVISWLFGMWAPLDVAPVTLLICSIVAALASVLGD-LTE 238 (285)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCcCCCCCchhhhHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHhH-HHH
Confidence 333444555665554432 35888888888888766543322 1356777888998888887775 556
Q ss_pred hhcCcccccccccCcccccc
Q 044779 324 KKIPMLKRVDDTMAVFHTHA 343 (477)
Q Consensus 324 ~~l~~~l~IDD~~~v~~vHg 343 (477)
..+|++.++.|--..+|=||
T Consensus 239 S~lKR~~gVKDSG~llPGHG 258 (285)
T PRK11624 239 SMFKREAGIKDSGHLIPGHG 258 (285)
T ss_pred HHHhhccCCCCCcCcCCCcC
Confidence 66777899999887777776
No 11
>PF01891 CbiM: Cobalt uptake substrate-specific transmembrane region; InterPro: IPR002751 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the integral membrane protein CbiM, which is involved in cobalamin synthesis, although its exact function in unknown.; GO: 0009236 cobalamin biosynthetic process, 0016021 integral to membrane
Probab=55.70 E-value=68 Score=30.71 Aligned_cols=21 Identities=29% Similarity=0.501 Sum_probs=16.4
Q ss_pred CCchhhhhHHHHHHHHHHHHcCCC
Q 044779 183 GGFVIHLSSGVAGFTAAYWVGPRA 206 (477)
Q Consensus 183 G~~vVH~~gG~~aL~~a~~lG~R~ 206 (477)
++..+|..|.. ..++++||+.
T Consensus 61 ~g~s~Hllg~~---l~~l~lGp~~ 81 (205)
T PF01891_consen 61 GGLSVHLLGLT---LLTLMLGPWL 81 (205)
T ss_pred CCchHHHhHHH---HHHHHHhHHH
Confidence 66899999875 5677889773
No 12
>TIGR03644 marine_trans_1 probable ammonium transporter, marine subtype. Members of this protein family are well conserved subclass of putative ammonimum transporters, belonging to the much broader set of ammonium/methylammonium transporter described by TIGR00836. Species with this transporter tend to be marine bacteria. Partial phylogenetic profiling (PPP) picks a member of this protein family as the single best-scoring protein vs. a reference profile for the marine environment Genome Property for a large number of different query genomes. This finding by PPP suggests that this transporter family represents an important adaptation to the marine environment.
Probab=53.19 E-value=3.2e+02 Score=29.34 Aligned_cols=139 Identities=14% Similarity=-0.023 Sum_probs=83.3
Q ss_pred ccccchhHHHHHHHHHHHHHhHHHHHhhhhccc------cc-ccHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccc
Q 044779 21 WMSKADNAWQLTAATLVGLQSVPGLVILYGSIV------KK-KWAVNSAFMALYAFAAVLVCWVGWGYQMSFGKKMIHFW 93 (477)
Q Consensus 21 ~~~~~d~~w~L~~~~lV~~~m~~Gf~lleaG~v------r~-kn~~~~l~~~~~~~~v~~i~~~~~Gy~lafg~~~~~fi 93 (477)
.+.+-|..+.++.+.+. ++--+|| .+|.. ++ +....+.++.+++.+.+.+.|.++-|.. +++..
T Consensus 199 ~~~~~n~~~~~lG~~iL-w~gW~gF---N~gs~l~~~~~~~~~~~~~a~~NT~la~a~g~l~~~~~~~~~-~gk~~---- 269 (404)
T TIGR03644 199 PIPGSNLPLATLGTFIL-WMGWFGF---NGGSQLALSDVADANAVARIFANTNAAAAGGAIAALLLTKLL-FGKAD---- 269 (404)
T ss_pred CCCCCCHHHHHHHHHHH-HHHHHhh---cchhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCC----
Confidence 45566777777777666 6655554 44432 11 1234566777788888888998775532 22210
Q ss_pred ccCcccccchhhcccccCCCccchhhhHhHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhcceeeeeecCcccc
Q 044779 94 GRPDVSLDENFLLSRAFAGYLPNATMVYFQFVFAAITLILIAGALLGRMNFHAWMLFVPLWLTFSYTIGAYSIWCPEGWL 173 (477)
Q Consensus 94 G~~~~~~~~~~~~~~~~~~~i~~~~~~~fq~~Fa~~a~~I~sGavaeR~~~~~~~i~~~l~~~~vYp~~~hwvW~~~GwL 173 (477)
+..+.+..-| -....-+-+.=.++.+-++.. +++++++..... ++
T Consensus 270 ------------------------~~~~~nG~LA---GLVaITa~~~~v~p~~A~iiG-~iag~v~~~~~~-------~~ 314 (404)
T TIGR03644 270 ------------------------LTMVLNGALA---GLVAITAEPLTPSPLAATLIG-AVGGVIVVFSIV-------LL 314 (404)
T ss_pred ------------------------HHHHHHHHHh---hhhhhccccCCCCHHHHHHHH-HHHHHHHHHHHH-------HH
Confidence 0111122222 112222333566677767775 445555554333 46
Q ss_pred cccCceecCCCchhhhhHHHHHHHHHHHHc
Q 044779 174 AKLGIIDYSGGFVIHLSSGVAGFTAAYWVG 203 (477)
Q Consensus 174 ~~lG~~DfaG~~vVH~~gG~~aL~~a~~lG 203 (477)
+++++.|--+...||..+|..|...+-+..
T Consensus 315 ~~~~iDD~~~~~~vHg~~Gi~G~i~~glf~ 344 (404)
T TIGR03644 315 DKLKIDDPVGAISVHGVAGIWGTLVVPITN 344 (404)
T ss_pred HhCCCCCCcCchHhhhHHHHHHHHHHHHhc
Confidence 788999999999999999999988887664
No 13
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=52.60 E-value=57 Score=27.78 Aligned_cols=73 Identities=16% Similarity=0.115 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHh-----hCCC-chhhhhhhhhccceeecCCCCCcchHHHHHHHHhhhhHHHHHHHHHhhhcCcccccc
Q 044779 260 TSLLTWLILDILF-----FGKP-SVIGATQGMITGLVCITPAAGVVQGWAAILMGMMSGSIPWYTMMVLHKKIPMLKRVD 333 (477)
Q Consensus 260 ~g~lt~~~~~~~~-----~~k~-s~~~~~nG~LaGlVaIta~~~~v~pw~A~iiG~vag~i~~~~~~~l~~~l~~~l~ID 333 (477)
.+.++..+++.++ ..|| ....+.-|++.|+++. .--+-.+++..+.-|.++|+.+......+.||-++ .+=|
T Consensus 14 ~~ii~~~lVq~IkkT~~v~~K~iPlIs~viGilLG~~~~-~~~~~~~l~~~~~aG~laGlAaTGL~e~~t~r~~~-~~e~ 91 (93)
T PF06946_consen 14 LSIITPALVQAIKKTKVVPNKWIPLISVVIGILLGAAAY-PLTGDGNLALMAWAGGLAGLAATGLFEQFTNRSKK-YGED 91 (93)
T ss_pred HHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHhh-hcCCCccHHHHHHHHHHhhhhhhhHHHHHHhhhhh-cCcC
Confidence 3444555555543 2344 4567778888888763 22223366666777889988888777777666433 3444
Q ss_pred c
Q 044779 334 D 334 (477)
Q Consensus 334 D 334 (477)
|
T Consensus 92 ~ 92 (93)
T PF06946_consen 92 D 92 (93)
T ss_pred C
Confidence 4
No 14
>PF01148 CTP_transf_1: Cytidylyltransferase family; InterPro: IPR000374 Phosphatidate cytidylyltransferase (2.7.7.41 from EC) [, , ] (also known as CDP- diacylglycerol synthase) (CDS) is the enzyme that catalyzes the synthesis of CDP-diacylglycerol from CTP and phosphatidate (PA): CTP + phosphatidate = diphosphate + CDP-diacylglycerol CDP-diacylglycerol is an important branch point intermediate in both prokaryotic and eukaryotic organisms. CDS is a membrane-bound enzyme.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016020 membrane
Probab=46.04 E-value=25 Score=34.09 Aligned_cols=67 Identities=16% Similarity=0.246 Sum_probs=47.5
Q ss_pred CchhhhhhhhhccceeecCCCCC---------cchHHHHHHHHhhhhHHHHHHHHHhhhcCcccccccccCcccccc
Q 044779 276 PSVIGATQGMITGLVCITPAAGV---------VQGWAAILMGMMSGSIPWYTMMVLHKKIPMLKRVDDTMAVFHTHA 343 (477)
Q Consensus 276 ~s~~~~~nG~LaGlVaIta~~~~---------v~pw~A~iiG~vag~i~~~~~~~l~~~l~~~l~IDD~~~v~~vHg 343 (477)
.+......|.++|.++....+-. .++|.+++++++++++..++- .++..+|+..+|-|--+.+|=||
T Consensus 161 ~sp~KT~EGsi~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gd-l~~S~~KR~~~iKD~g~lipghG 236 (259)
T PF01148_consen 161 ISPKKTWEGSIAGFISSFIISFLLLYYLSSFFLSWWQAILISLLASIVEAFGD-LFESAIKRDAGIKDSGNLIPGHG 236 (259)
T ss_pred CCCCCCHHHHhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhcccccccccCcC
Confidence 45555666666666654433321 567999999999999988775 34445666789999988888776
No 15
>PHA03240 envelope glycoprotein M; Provisional
Probab=40.84 E-value=30 Score=33.82 Aligned_cols=36 Identities=25% Similarity=0.403 Sum_probs=23.8
Q ss_pred CcccCCCCCCCCC--CCCccc--ccccchhHHHHHHHHHH
Q 044779 2 SFNVSGLPENLLP--DDASPE--WMSKADNAWQLTAATLV 37 (477)
Q Consensus 2 ~~~~~~~~~~~~~--~~~~~~--~~~~~d~~w~L~~~~lV 37 (477)
.||++|+|+|+.- ..++.. +-+...++|+++..+++
T Consensus 184 ~y~vtgl~~~~~ds~agnveaqr~~~aaH~~WIiilIIiI 223 (258)
T PHA03240 184 DYNVTGLEEGFADSFTGNFEAHRSKDAAHIAWIFIAIIII 223 (258)
T ss_pred CceeeccccccccccccceeeecccccchHhHHHHHHHHH
Confidence 4999999999983 111111 23467789998866544
No 16
>PF12270 Cyt_c_ox_IV: Cytochrome c oxidase subunit IV; InterPro: IPR021050 This family of proteins is found in bacteria. Proteins in this family are approximately 140 amino acids in length. This family is the fourth subunit of the cytochrome c oxidase complex. This subunit does not have a catalytic capacity but instead, is required for assembly and/or stability of the complex []. ; GO: 0004129 cytochrome-c oxidase activity, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=40.59 E-value=1.1e+02 Score=27.87 Aligned_cols=47 Identities=21% Similarity=0.180 Sum_probs=30.9
Q ss_pred HHHHHhhhcceeeeeecCcccccccCceecCCCchhhhhHHHHHHHHHHH--HcCCCC
Q 044779 152 PLWLTFSYTIGAYSIWCPEGWLAKLGIIDYSGGFVIHLSSGVAGFTAAYW--VGPRAT 207 (477)
Q Consensus 152 ~l~~~~vYp~~~hwvW~~~GwL~~lG~~DfaG~~vVH~~gG~~aL~~a~~--lG~R~g 207 (477)
++...++|-...+|.=+ + .|-+|....-++++.+.+++.++ ..+|++
T Consensus 15 f~~~~~vY~~~t~~~~~--------~-~E~~Gt~aL~ls~~l~~mig~yl~~~~rr~~ 63 (137)
T PF12270_consen 15 FLVVAVVYGFWTKWSGD--------G-GEWVGTVALVLSGGLALMIGFYLRFTARRIG 63 (137)
T ss_pred HHHHHHHHHHHHhccCC--------C-CCcchHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 34455667665444321 1 29999999999999988888765 355554
No 17
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=39.13 E-value=66 Score=30.86 Aligned_cols=109 Identities=17% Similarity=0.246 Sum_probs=53.8
Q ss_pred cHHHHHHHHHHHHHhhhhhccCCCC--CCCcchhhHHHHHHHHHHHHHHHHHHHH-HHhh-----CCCchhh-hh-----
Q 044779 217 NILLMLAGAGLLWMGWTGFNGGDPY--NAGTDASLAVLNTHVCTATSLLTWLILD-ILFF-----GKPSVIG-AT----- 282 (477)
Q Consensus 217 s~~~~~lGt~lLw~GW~gFN~gs~~--~~~~~~~~a~~NT~la~a~g~lt~~~~~-~~~~-----~k~s~~~-~~----- 282 (477)
+....++-..+++++.+++-.|... ..+......++++++.+..+++....+. ++.. +|.+... +.
T Consensus 77 ~~~~~~ld~~L~~~~if~~~~gi~~~f~~~~~~~~gi~tli~~~i~~G~~~~~~~~~i~~~~~~~~r~~~~k~~~~~~~~ 156 (206)
T PF06570_consen 77 NPWLMALDNSLLFFGIFSLLFGIMGFFSPKNSNQYGIITLILVSIVGGLVFYFIFKYIYPYKKKKKRPSWWKYILISVLA 156 (206)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHH
Confidence 4455666666667776666555322 1112222256666666666655555444 4332 2322111 11
Q ss_pred hhhhccc---eeecC-CCC-CcchHHHHHHHHhhhhHHHHHHHHHhhhcCcccccc
Q 044779 283 QGMITGL---VCITP-AAG-VVQGWAAILMGMMSGSIPWYTMMVLHKKIPMLKRVD 333 (477)
Q Consensus 283 nG~LaGl---VaIta-~~~-~v~pw~A~iiG~vag~i~~~~~~~l~~~l~~~l~ID 333 (477)
-...-++ .+.-| .-+ .++||.-+++|+++-++. ++++|| ++|-
T Consensus 157 ~~~w~~~~~~~~~lp~~inp~l~~~~~iiig~i~~~~~----~~lkkk----~~i~ 204 (206)
T PF06570_consen 157 MVLWIVIFVLTSFLPPVINPVLPPWVYIIIGVIAFALR----FYLKKK----YNIT 204 (206)
T ss_pred HHHHHHHHHHHHHccccCCcCCCHHHHHHHHHHHHHHH----HHHHHH----hCCC
Confidence 1111111 11112 222 778899999987765544 466665 6664
No 18
>PLN02594 phosphatidate cytidylyltransferase
Probab=34.85 E-value=25 Score=36.79 Aligned_cols=42 Identities=14% Similarity=0.272 Sum_probs=34.5
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHhhhcCcccccccccCcccccc
Q 044779 301 GWAAILMGMMSGSIPWYTMMVLHKKIPMLKRVDDTMAVFHTHA 343 (477)
Q Consensus 301 pw~A~iiG~vag~i~~~~~~~l~~~l~~~l~IDD~~~v~~vHg 343 (477)
.+.++++|++++++..++-. .+..+|+.++|-|--+.+|=||
T Consensus 235 ~~h~l~l~l~aSl~a~fGdl-faS~~KR~~~IKDfG~~IPGHG 276 (342)
T PLN02594 235 QWHALSLGLFASIIAPFGGF-FASGFKRAFKIKDFGDSIPGHG 276 (342)
T ss_pred HHHHHHHHHHHHHHHHhhhH-HHHHHHHccCCCcccCccCCCc
Confidence 58899999999999998854 4444666799999988888887
No 19
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=33.58 E-value=2.9e+02 Score=24.78 Aligned_cols=86 Identities=15% Similarity=0.126 Sum_probs=54.5
Q ss_pred chHHHHHHHHhhhhHHHHHHHHHhhhcCcccccccccCcccccccchhhhhhhhhhhcCccccchhcccCCccccccccc
Q 044779 300 QGWAAILMGMMSGSIPWYTMMVLHKKIPMLKRVDDTMAVFHTHAVAGSLGGILAGFFANPKLNRIFYLVDDWEHYIGLAY 379 (477)
Q Consensus 300 ~pw~A~iiG~vag~i~~~~~~~l~~~l~~~l~IDD~~~v~~vHg~~Gi~G~i~~glfa~~~~~~~~~~~~~~~~~~Gl~~ 379 (477)
+|+.|-.+-...|.+.......+.++ .+...--++=..+-.+|+.|.+.+..
T Consensus 29 s~~~as~i~~~~G~i~~~i~~~~~~~----~~~~~~~~~p~w~~lGG~lG~~~V~~------------------------ 80 (138)
T PF04657_consen 29 SPLVASFISFGVGFILLLIILLITGR----PSLASLSSVPWWAYLGGLLGVFFVLS------------------------ 80 (138)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhcc----cccchhccCChHHhccHHHHHHHHHH------------------------
Confidence 47777777777777666555555443 13333334555667778777776553
Q ss_pred ccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 044779 380 GFQSNRASAGFRQMGVQLLGISFVIALNIFTTSVICVLIRIVVPL 424 (477)
Q Consensus 380 g~~~~~~~~~~~ql~~Ql~g~~v~~~~s~~~~~i~~~ilk~~~~L 424 (477)
.-..++-+|...+.......=.+...++|++..+
T Consensus 81 -----------~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~f 114 (138)
T PF04657_consen 81 -----------NIILVPRLGAALTTILIVAGQLIASLLIDHFGLF 114 (138)
T ss_pred -----------HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 1233566777777777777777888888887543
No 20
>COG4120 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=32.89 E-value=21 Score=35.89 Aligned_cols=46 Identities=22% Similarity=0.189 Sum_probs=37.8
Q ss_pred hhccceeecCCCCCcchHHHHHHHHhhhhHHHHHHHHHhhhcCccccccc
Q 044779 285 MITGLVCITPAAGVVQGWAAILMGMMSGSIPWYTMMVLHKKIPMLKRVDD 334 (477)
Q Consensus 285 ~LaGlVaIta~~~~v~pw~A~iiG~vag~i~~~~~~~l~~~l~~~l~IDD 334 (477)
.+.|-|+.+.-..=++||-|.+++++||.+.-...-++++| .||+|
T Consensus 42 pLGaAv~a~li~~G~nP~~at~~a~~AG~~aG~it~~l~~k----~kI~~ 87 (293)
T COG4120 42 PLGAAVAATLIAAGVNPFLATLVAMVAGAAAGMITGLLNVK----FKILT 87 (293)
T ss_pred cchHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHh----ccHHH
Confidence 46677777777777899999999999999988778888876 78876
No 21
>PRK10712 PTS system fructose-specific transporter subunits IIBC; Provisional
Probab=32.19 E-value=1.6e+02 Score=33.11 Aligned_cols=52 Identities=23% Similarity=0.634 Sum_probs=32.2
Q ss_pred hhCCCchhhhhhhhhccceeecCCCCCcchHHHHHHHHhhhhHHHHHHHHHhhhcCcccccccccC
Q 044779 272 FFGKPSVIGATQGMITGLVCITPAAGVVQGWAAILMGMMSGSIPWYTMMVLHKKIPMLKRVDDTMA 337 (477)
Q Consensus 272 ~~~k~s~~~~~nG~LaGlVaIta~~~~v~pw~A~iiG~vag~i~~~~~~~l~~~l~~~l~IDD~~~ 337 (477)
.-+|+ .+.-|.+.|+++...++|++ ++++.|.++|-+. ++++|+ .|+-+.++
T Consensus 293 ia~rp---glapg~i~g~~a~~~~~GFl---G~Ilag~lagyv~----~~l~K~----~~lP~~l~ 344 (563)
T PRK10712 293 IADRP---GLTPGLIGGMLAVSTGSGFI---GGIIAGFLAGYVA----KLISTK----LKLPQSME 344 (563)
T ss_pred hcCCc---cchHHHHHHHHHhcCCchHH---HHHHHHHHHHHHH----HHHHHh----ccCcHHHH
Confidence 35565 55889999999877766554 5666666666433 444443 45555555
No 22
>PRK06433 NADH dehydrogenase subunit J; Provisional
Probab=32.18 E-value=67 Score=26.92 Aligned_cols=41 Identities=12% Similarity=0.118 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHhcC
Q 044779 391 RQMGVQLLGISFVIALNIFTTSVICVLIRIVVPLRLTDEELQTG 434 (477)
Q Consensus 391 ~ql~~Ql~g~~v~~~~s~~~~~i~~~ilk~~~~LRv~~e~E~~G 434 (477)
..+..+.+++.-++.|+..++.+..+.+..+ |.++++|.+|
T Consensus 47 ~lL~a~fvA~~qi~VYaGai~vLflF~iml~---~~~~~~~~~~ 87 (88)
T PRK06433 47 VMLNAEFLAAVQVLVYVGAVLILITFAVMLT---KGEEGEESRG 87 (88)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHc---CcccccCCCC
Confidence 5667889999999999999998888888764 3344455443
No 23
>PRK10457 hypothetical protein; Provisional
Probab=27.98 E-value=93 Score=25.77 Aligned_cols=38 Identities=18% Similarity=0.389 Sum_probs=23.2
Q ss_pred hhhhhcccee--ecCCCCCcchHHHHHHHHhhhhHHHHHH
Q 044779 282 TQGMITGLVC--ITPAAGVVQGWAAILMGMMSGSIPWYTM 319 (477)
Q Consensus 282 ~nG~LaGlVa--Ita~~~~v~pw~A~iiG~vag~i~~~~~ 319 (477)
.-|.++|.+| +.|+-+-...+..+++|++++++-.+..
T Consensus 8 iiG~iaG~lA~~i~pg~~~~G~~~tiilGiiGA~iGg~l~ 47 (82)
T PRK10457 8 IFGLIAGILAKWIMPGKDGGGFFMTIILGIVGAVVGGWIS 47 (82)
T ss_pred HHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHH
Confidence 3444555544 4555444566788888888887765443
No 24
>TIGR01427 PTS_IIC_fructo PTS system, fructose subfamily, IIC component. This model represents the IIC component, or IIC region of a IIABC or IIBC polypeptide of a phosphotransferase system for carbohydrate transport. Members of this family belong to the fructose-specific subfamily of the broader family (pfam02378) of PTS IIC proteins. Members should be found as part of the same chain or in the same operon as fructose family IIA (TIGR00848) and IIB (TIGR00829) protein regions. A number of bacterial species have members in two different branches of this subfamily, suggesting some diversity in substrate specificity of its members.
Probab=27.78 E-value=3.1e+02 Score=28.76 Aligned_cols=52 Identities=23% Similarity=0.415 Sum_probs=33.0
Q ss_pred HHHHhhCCCchhhhhhhhhccceeecCCCCCcchHHHHHHHHhhhhHHHHHHHHHhhh
Q 044779 268 LDILFFGKPSVIGATQGMITGLVCITPAAGVVQGWAAILMGMMSGSIPWYTMMVLHKK 325 (477)
Q Consensus 268 ~~~~~~~k~s~~~~~nG~LaGlVaIta~~~~v~pw~A~iiG~vag~i~~~~~~~l~~~ 325 (477)
+.|-..+|+-. .-|.+.|+++....+++ .++++.|++++.+.....|+++|+
T Consensus 82 Ia~Sia~k~g~---~pG~i~G~~~~~~~~Gf---lGgII~gilag~~~~~lek~ikK~ 133 (346)
T TIGR01427 82 IAYSIADRPGL---APGMIAGLIANNFNSGF---LGGIIAGFLAGYVVKGLQKYIKKK 133 (346)
T ss_pred HHHHHccCcCC---cHHHHHHHHHHccccch---HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445677643 44999999988766664 377777777776555444554443
No 25
>PF14074 DUF4257: Protein of unknown function (DUF4257)
Probab=27.31 E-value=26 Score=29.12 Aligned_cols=58 Identities=10% Similarity=0.050 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHhhCCC-------------chhhhhhhhhccceeecCCCCCcchHHHHHHHHhhhh
Q 044779 256 VCTATSLLTWLILDILFFGKP-------------SVIGATQGMITGLVCITPAAGVVQGWAAILMGMMSGS 313 (477)
Q Consensus 256 la~a~g~lt~~~~~~~~~~k~-------------s~~~~~nG~LaGlVaIta~~~~v~pw~A~iiG~vag~ 313 (477)
+|...|+++.++-++..+||. -..++.-|.+|++.++|...+.-+-+.-+.+.++||.
T Consensus 4 iA~liGgi~G~i~H~~~~g~i~~Pr~~k~~~~lGF~~d~~vG~~AaiL~v~~~~~~~~~~~iv~vSilaG~ 74 (82)
T PF14074_consen 4 IAGLIGGIMGLIGHYRKNGVIKKPRRTKQFFYLGFLEDMFVGSLAAILAVTVSSDPESLRVIVKVSILAGI 74 (82)
T ss_pred EeeeHhhHHHHHHHHhcCCEEecCccccceEEecHHHHHHHHHHHHHHhheeccCchhhhhhhhhhhhhhc
Confidence 456678888888775444431 2356778888888888888887777887777777774
No 26
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=27.10 E-value=1e+02 Score=30.76 Aligned_cols=64 Identities=22% Similarity=0.218 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHh--------hCCCchhhhhh---hhhccceeecCCCCCcchHHHHHHHHhhhhHHHHHH
Q 044779 255 HVCTATSLLTWLILDILF--------FGKPSVIGATQ---GMITGLVCITPAAGVVQGWAAILMGMMSGSIPWYTM 319 (477)
Q Consensus 255 ~la~a~g~lt~~~~~~~~--------~~k~s~~~~~n---G~LaGlVaIta~~~~v~pw~A~iiG~vag~i~~~~~ 319 (477)
+++...+++.++.+++.- .-.+|+.+..| ++|||+|-..++-++.+.. ++++|.++|++|-..-
T Consensus 224 l~am~ISgl~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~-sillGflsg~iYavak 298 (309)
T COG5070 224 LMAMFISGLCSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIF-SILLGFLSGAIYAVAK 298 (309)
T ss_pred HHHHHHHHHHHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHH-HHHHHHHHHHHHHHHH
Confidence 455566666666666532 12356666665 7899999999988877654 6999999999987554
No 27
>PLN02953 phosphatidate cytidylyltransferase
Probab=26.36 E-value=76 Score=33.92 Aligned_cols=83 Identities=14% Similarity=0.033 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHhhC----CCchhhhhhhhhccceeecCCC--------CCcchHHHHHHHHhhhhHHHHHHHHHhhhcC
Q 044779 260 TSLLTWLILDILFFG----KPSVIGATQGMITGLVCITPAA--------GVVQGWAAILMGMMSGSIPWYTMMVLHKKIP 327 (477)
Q Consensus 260 ~g~lt~~~~~~~~~~----k~s~~~~~nG~LaGlVaIta~~--------~~v~pw~A~iiG~vag~i~~~~~~~l~~~l~ 327 (477)
++=+.+++..+...| +.|+.....|.++|+++....+ -...++.++++|++.++...++- +.+..+|
T Consensus 280 ~~Di~AY~~G~~fGk~kl~~ISPkKTwEG~iGGil~~vlv~~l~~~~l~~~~~~~~~i~lg~li~~~~~~GD-L~eS~iK 358 (403)
T PLN02953 280 ATDTFAFLGGKAFGRTPLTSISPKKTWEGTFVGLVGCIAITILLSKSLSWPQSLFSSIAFGFLNFFGSVFGD-LTESMIK 358 (403)
T ss_pred HHHHHHHHHHHHhCCCCCCcCCCCCeeeeehhHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHhhH-HHHHHHh
Confidence 344455555554432 2455555666655543321111 12355677889999888888775 4455566
Q ss_pred cccccccccCcccccc
Q 044779 328 MLKRVDDTMAVFHTHA 343 (477)
Q Consensus 328 ~~l~IDD~~~v~~vHg 343 (477)
++.+|.|--+.+|=||
T Consensus 359 R~~gVKDsG~liPGHG 374 (403)
T PLN02953 359 RDAGVKDSGSLIPGHG 374 (403)
T ss_pred HccCCCCccccCCCCC
Confidence 7799999877777665
No 28
>PRK10263 DNA translocase FtsK; Provisional
Probab=25.27 E-value=3.9e+02 Score=33.12 Aligned_cols=15 Identities=27% Similarity=0.530 Sum_probs=12.0
Q ss_pred cccchhhhhhhhhhh
Q 044779 342 HAVAGSLGGILAGFF 356 (477)
Q Consensus 342 Hg~~Gi~G~i~~glf 356 (477)
+..+|++|.++..++
T Consensus 140 ~~gGGIIG~lLs~lL 154 (1355)
T PRK10263 140 FASGGVIGSLLSTTL 154 (1355)
T ss_pred ccccchHHHHHHHHH
Confidence 467999999987765
No 29
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=23.95 E-value=84 Score=28.05 Aligned_cols=30 Identities=17% Similarity=0.278 Sum_probs=14.8
Q ss_pred HHHHHHHhhhhHHHHH-HHHHhhhcCccccc
Q 044779 303 AAILMGMMSGSIPWYT-MMVLHKKIPMLKRV 332 (477)
Q Consensus 303 ~A~iiG~vag~i~~~~-~~~l~~~l~~~l~I 332 (477)
..+++|++||++-.+. ..|+-+|++|+-+-
T Consensus 67 ~~Ii~gv~aGvIg~Illi~y~irR~~Kk~~~ 97 (122)
T PF01102_consen 67 IGIIFGVMAGVIGIILLISYCIRRLRKKSSS 97 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-----
T ss_pred eehhHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 5677888888765443 23344555554433
No 30
>COG0575 CdsA CDP-diglyceride synthetase [Lipid metabolism]
Probab=23.34 E-value=69 Score=32.01 Aligned_cols=80 Identities=16% Similarity=0.169 Sum_probs=53.5
Q ss_pred HHHHHHHHHhhC-----CCchhhhhhhhhccceeecCCCCC---------cchHHHHHHHHhhhhHHHHHHHHHhhhcCc
Q 044779 263 LTWLILDILFFG-----KPSVIGATQGMITGLVCITPAAGV---------VQGWAAILMGMMSGSIPWYTMMVLHKKIPM 328 (477)
Q Consensus 263 lt~~~~~~~~~~-----k~s~~~~~nG~LaGlVaIta~~~~---------v~pw~A~iiG~vag~i~~~~~~~l~~~l~~ 328 (477)
+.++++.+...| |.|+.....|.+.|.+..+..+-. .+++..++++++.++++.++- ..+..+|+
T Consensus 148 i~Ayf~Gr~fGk~kl~p~iSP~KT~eGfigG~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~lGD-L~eS~iKR 226 (265)
T COG0575 148 IGAYFVGRRFGKHKLAPKISPKKTWEGFIGGALGAVLVAVLVIFLLSSLILNIWTLLILGLLLVLTSQLGD-LFESYIKR 226 (265)
T ss_pred hhHHHHHHHcCCCCCCCcCCCCCchHHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhh-HHHHHHHH
Confidence 334555544333 367888888888887665444432 234778899999998888764 44444556
Q ss_pred ccccccccCcccccc
Q 044779 329 LKRVDDTMAVFHTHA 343 (477)
Q Consensus 329 ~l~IDD~~~v~~vHg 343 (477)
++++-|--..+|=||
T Consensus 227 ~~gvKDsg~liPGHG 241 (265)
T COG0575 227 LLGIKDSGWLIPGHG 241 (265)
T ss_pred ccCCCCcCCCCCCcC
Confidence 689999877777776
No 31
>PRK10478 putative PTS system fructose-like transporter subunit EIIC; Provisional
Probab=21.65 E-value=2.1e+02 Score=30.26 Aligned_cols=70 Identities=20% Similarity=0.290 Sum_probs=43.9
Q ss_pred cccccccCcccccccchhhhhhhhhhhcCccccchhcccCCcccccccccccccccccchhhHHHHHHHHHHHHHHHHHH
Q 044779 330 KRVDDTMAVFHTHAVAGSLGGILAGFFANPKLNRIFYLVDDWEHYIGLAYGFQSNRASAGFRQMGVQLLGISFVIALNIF 409 (477)
Q Consensus 330 l~IDD~~~v~~vHg~~Gi~G~i~~glfa~~~~~~~~~~~~~~~~~~Gl~~g~~~~~~~~~~~ql~~Ql~g~~v~~~~s~~ 409 (477)
+.+.||..+++...++|.+|....++|..+.... .. |++ . +-.. .+.+..++.+.-+++
T Consensus 267 Fgv~~p~r~i~a~~iGsaVgGal~~~~gv~~~ap-------~g---Gi~-~---------ip~~-~~~l~~iiailig~v 325 (359)
T PRK10478 267 FAAADPLRVIPSIMVGSVCGAVTAALFGAQCYAG-------WG---GLI-V---------LPVV-DGKLGYIAAVAVGAV 325 (359)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHhCCccccc-------cc---hHH-H---------HHHH-HHHHHHHHHHHHHHH
Confidence 3458888888989999999999999887653221 11 221 1 1111 244555566666667
Q ss_pred HHHHHHHHHHH
Q 044779 410 TTSVICVLIRI 420 (477)
Q Consensus 410 ~~~i~~~ilk~ 420 (477)
+++++..++|+
T Consensus 326 vtavl~~~~k~ 336 (359)
T PRK10478 326 VTAVCVNVLKS 336 (359)
T ss_pred HHHHHHHHHcc
Confidence 77777777775
No 32
>PRK11909 cobalt transport protein CbiM; Provisional
Probab=20.87 E-value=8.1e+02 Score=24.10 Aligned_cols=24 Identities=13% Similarity=0.169 Sum_probs=17.6
Q ss_pred HHHHHHHHhhhhHHHHHHHHHhhh
Q 044779 302 WAAILMGMMSGSIPWYTMMVLHKK 325 (477)
Q Consensus 302 w~A~iiG~vag~i~~~~~~~l~~~ 325 (477)
+-..++|++=|++..+...+++|.
T Consensus 189 ~h~~i~~i~Eg~iT~~~~~~l~~~ 212 (230)
T PRK11909 189 AHLTVAGIVEAIVTGLVVYYLQKA 212 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333445888899988888888773
No 33
>PRK10666 ammonium transporter; Provisional
Probab=20.83 E-value=1.1e+03 Score=25.56 Aligned_cols=139 Identities=15% Similarity=0.089 Sum_probs=76.3
Q ss_pred cccchhHHHHHHHHHHHHHhHHHHHhhhhccccccc--HHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCcccccCccc
Q 044779 22 MSKADNAWQLTAATLVGLQSVPGLVILYGSIVKKKW--AVNSAFMALYAFAAVLVCWVGWGYQMSFGKKMIHFWGRPDVS 99 (477)
Q Consensus 22 ~~~~d~~w~L~~~~lV~~~m~~Gf~lleaG~vr~kn--~~~~l~~~~~~~~v~~i~~~~~Gy~lafg~~~~~fiG~~~~~ 99 (477)
.++-|....++.+.+. ++ |-.-|.+|.....| +..+.++.+++.+.+.+.|.++-|- -.++-.
T Consensus 215 ~~~hn~~~~~lGt~lL-w~---GW~gFN~Gs~~~~~~~a~~a~~nT~la~a~g~l~~~~~~~~-~~gk~~---------- 279 (428)
T PRK10666 215 FKPHNLPMVFTGTAIL-YI---GWFGFNAGSAGAANEIAALAFVNTVVATAAAILGWVFGEWA-LRGKPS---------- 279 (428)
T ss_pred CCCCCHHHHHHHHHHH-HH---HHHhccchhhccccchHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCC----------
Confidence 3344445555555444 44 55556777765443 3445666677777778888765432 111100
Q ss_pred ccchhhcccccCCCccchhhhHhHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhcceeeeeecCccccc-ccCc
Q 044779 100 LDENFLLSRAFAGYLPNATMVYFQFVFAAITLILIAGALLGRMNFHAWMLFVPLWLTFSYTIGAYSIWCPEGWLA-KLGI 178 (477)
Q Consensus 100 ~~~~~~~~~~~~~~i~~~~~~~fq~~Fa~~a~~I~sGavaeR~~~~~~~i~~~l~~~~vYp~~~hwvW~~~GwL~-~lG~ 178 (477)
+..+.+ .+.+-.....+-++=.++..-++.. ++.++++....++ |+ ++++
T Consensus 280 ------------------~~~~~n---G~LaGLVaITa~a~~v~p~~A~iiG-~vag~v~~~~~~~-------l~~~~~i 330 (428)
T PRK10666 280 ------------------LLGACS---GAIAGLVGVTPACGYVGVGGALIIG-VVAGLAGLWGVTM-------LKRWLRV 330 (428)
T ss_pred ------------------HHHHHH---HHhhhhhhcccccccCCHHHHHHHH-HHHHHHHHHHHHH-------HHhcCCC
Confidence 000011 1111111122233455666666664 3455554432222 34 4789
Q ss_pred eecCCCchhhhhHHHHHHHHHHHHcC
Q 044779 179 IDYSGGFVIHLSSGVAGFTAAYWVGP 204 (477)
Q Consensus 179 ~DfaG~~vVH~~gG~~aL~~a~~lG~ 204 (477)
.|--+...||..+|..|...+-+...
T Consensus 331 DD~~~a~~vHgv~Gi~G~l~~glfa~ 356 (428)
T PRK10666 331 DDPCDVFGVHGVCGIVGCILTGIFAA 356 (428)
T ss_pred CCCcCccHhhhHhHHHHHHHHHHhhc
Confidence 99999999999999999888877653
No 34
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=20.60 E-value=3e+02 Score=25.61 Aligned_cols=67 Identities=19% Similarity=0.246 Sum_probs=36.5
Q ss_pred CCCcHHHHHHHHHHHHHhhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhCCCc--hhhhhhhhhcccee
Q 044779 214 PPNNILLMLAGAGLLWMGWTGFNGGDPYNAGTDASLAVLNTHVCTATSLLTWLILDILFFGKPS--VIGATQGMITGLVC 291 (477)
Q Consensus 214 ~~hs~~~~~lGt~lLw~GW~gFN~gs~~~~~~~~~~a~~NT~la~a~g~lt~~~~~~~~~~k~s--~~~~~nG~LaGlVa 291 (477)
++++..+..++..+.-.+.--+.+|+ ......|...|.+..++..+..+.+.. +..++.+.++++++
T Consensus 99 ~~y~~~~~~l~~~l~~~~fa~lfgg~-----------~~~~~~a~i~g~~~~~~~~~~~r~~~~~~~~~~~aa~~~~~~a 167 (193)
T PF06738_consen 99 PRYPPWLVILAAGLASAAFALLFGGS-----------WIDMIVAFILGLLVGLLRQLLSRRRLNSFIQEFIAAFLASLLA 167 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCC-----------HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 36777878888877776665555553 333455666666666655554443332 22334444444433
No 35
>COG2035 Predicted membrane protein [Function unknown]
Probab=20.48 E-value=2.6e+02 Score=28.50 Aligned_cols=140 Identities=10% Similarity=0.024 Sum_probs=74.0
Q ss_pred hhhhhHHHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHHHHHHHhhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHH
Q 044779 186 VIHLSSGVAGFTAAYWVGPRATKDRERFPPNNILLMLAGAGLLWMGWTGFNGGDPYNAGTDASLAVLNTHVCTATSLLTW 265 (477)
Q Consensus 186 vVH~~gG~~aL~~a~~lG~R~g~~~~~~~~hs~~~~~lGt~lLw~GW~gFN~gs~~~~~~~~~~a~~NT~la~a~g~lt~ 265 (477)
++-+..-++||+..-+.-.++..+.++..+.+.....+.++++...-..+|...... +...-.+++.+|++.++.+-
T Consensus 84 p~~t~~fF~GlI~~sVp~llk~i~~~s~~~~~~l~~li~gfii~~~~~~~~~~~~~~---~~~~~~i~~~~aGavAa~AM 160 (276)
T COG2035 84 PVPTLAFFAGLILGSVPSLLKEINYKSVKTVNRLFALILGFIILGLILYLNNIQTAS---ITTGYLILLFIAGAVAACAM 160 (276)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHHHHHHHHHHHhcccccccc---cccchHHHHHHHHHHHHHHH
Confidence 444556667777765544443322222224455666666666666666666543222 23345677777665443221
Q ss_pred HH------HHHHhhCCCch-hhhhhhhhccceeecCCCCCcchHHHHHHHHhhhhHHHHHHHHHhhhcCcccccccccCc
Q 044779 266 LI------LDILFFGKPSV-IGATQGMITGLVCITPAAGVVQGWAAILMGMMSGSIPWYTMMVLHKKIPMLKRVDDTMAV 338 (477)
Q Consensus 266 ~~------~~~~~~~k~s~-~~~~nG~LaGlVaIta~~~~v~pw~A~iiG~vag~i~~~~~~~l~~~l~~~l~IDD~~~v 338 (477)
.+ .-.+.-|.+.. ....+ +.....+...+.+|+++|++.. .|.++..+++ . ..
T Consensus 161 ilPGiSGS~lLLllG~Y~~vl~~ls-----------s~~~l~~l~~f~~G~~~Gll~f--skvi~y~L~~-h------~~ 220 (276)
T COG2035 161 ILPGISGSFLLLLLGVYAPVLSALS-----------SFFILGTLLPFAIGAGAGLLTF--SKVISYLLRN-H------RE 220 (276)
T ss_pred hCCCCcHHHHHHHHhhHHHHHHHHH-----------hhhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHH-h------HH
Confidence 10 00123444432 22232 4456778889999999998753 3444433221 2 25
Q ss_pred ccccccchhh
Q 044779 339 FHTHAVAGSL 348 (477)
Q Consensus 339 ~~vHg~~Gi~ 348 (477)
...|.+.|+.
T Consensus 221 ~t~~fi~Gl~ 230 (276)
T COG2035 221 ITYAFIIGLI 230 (276)
T ss_pred HHHHHHHHHH
Confidence 5677777754
No 36
>COG1288 Predicted membrane protein [Function unknown]
Probab=20.13 E-value=86 Score=34.02 Aligned_cols=38 Identities=16% Similarity=0.046 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCChHHHhcC-Chhhhchh
Q 044779 405 ALNIFTTSVICVLIRIVVPLRLTDEELQTG-DDAIHGEE 442 (477)
Q Consensus 405 ~~s~~~~~i~~~ilk~~~~LRv~~e~E~~G-D~~~hg~~ 442 (477)
.|......-+.++.+|..++|-+||.-... |..||.|.
T Consensus 222 ~~v~~~~~~i~y~~~Ya~KvkkdP~~S~v~~~~~e~r~~ 260 (481)
T COG1288 222 VWVVFTLISIIYVYWYASKVKKDPTLSLVYEDDEEFRET 260 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCccccccccchHHHHHH
Confidence 444555556677788888899999988888 88888774
Done!