Query 044779
Match_columns 477
No_of_seqs 144 out of 1175
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 11:27:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044779.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044779hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2b2h_A AMT-1, ammonium transpo 100.0 8E-108 3E-112 847.5 33.0 394 22-449 1-395 (399)
2 1u7g_A Probable ammonium trans 100.0 1E-100 4E-105 791.0 31.3 381 21-426 4-385 (385)
3 3b9w_A Ammonium transporter fa 100.0 1.4E-82 4.6E-87 658.9 27.3 363 39-474 25-398 (407)
4 3hd6_A Ammonium transporter RH 100.0 5.4E-79 1.9E-83 642.5 24.0 408 39-467 21-469 (490)
5 3b9w_A Ammonium transporter fa 69.5 43 0.0015 34.4 12.4 143 22-203 172-315 (407)
6 3hd6_A Ammonium transporter RH 45.2 1.2E+02 0.0042 31.8 10.9 144 21-203 217-364 (490)
7 2b2h_A AMT-1, ammonium transpo 42.1 2.9E+02 0.01 28.1 14.6 138 21-203 181-320 (399)
8 1u7g_A Probable ammonium trans 18.3 7.4E+02 0.025 24.9 13.7 142 20-204 191-334 (385)
9 4ezc_A UREA transporter 1; mem 8.8 4.1E+02 0.014 26.9 5.6 70 280-359 65-134 (384)
10 2fd4_A Avirulence protein AVRP 8.3 2E+02 0.0067 23.8 2.4 49 425-473 22-74 (122)
No 1
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=100.00 E-value=7.6e-108 Score=847.46 Aligned_cols=394 Identities=34% Similarity=0.630 Sum_probs=363.6
Q ss_pred cccchhHHHHHHHHHHHHHhHHHHHhhhhcccccccHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCcccccCccccc
Q 044779 22 MSKADNAWQLTAATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVLVCWVGWGYQMSFGKKMIHFWGRPDVSLD 101 (477)
Q Consensus 22 ~~~~d~~w~L~~~~lV~~~m~~Gf~lleaG~vr~kn~~~~l~~~~~~~~v~~i~~~~~Gy~lafg~~~~~fiG~~~~~~~ 101 (477)
+|..|+.|+|+|++|| ++|||||+|+|+|+||+||++|+++||++++++++++||++||+++||++.++|+|..++++.
T Consensus 1 ~~~~d~~w~l~~~~LV-~~M~~Gfa~~~~G~vR~KN~~n~l~k~~~~~~i~~i~w~~~Gy~lafg~~~~~~iG~~~~~~~ 79 (399)
T 2b2h_A 1 MSDGNVAWILASTALV-MLMVPGVGFFYAGMVRRKNAVNMIALSFISLIITVLLWIFYGYSVSFGNDISGIIGGLNYALL 79 (399)
T ss_dssp CCHHHHHHHHHHHHHH-HHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSEETTTEECSTTGGG
T ss_pred CCcccHHHHHHHHHHH-HHHHHHHHHHhcccccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCchHhhc
Confidence 3678999999999999 999999999999999999999999999999999999999999999999865689998554432
Q ss_pred chhhcccccCCCccchhhhHhHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhcceeeeeecCcccccccCceec
Q 044779 102 ENFLLSRAFAGYLPNATMVYFQFVFAAITLILIAGALLGRMNFHAWMLFVPLWLTFSYTIGAYSIWCPEGWLAKLGIIDY 181 (477)
Q Consensus 102 ~~~~~~~~~~~~i~~~~~~~fq~~Fa~~a~~I~sGavaeR~~~~~~~i~~~l~~~~vYp~~~hwvW~~~GwL~~lG~~Df 181 (477)
.+.. .....+++||++||++|++|++||++||+|+.+|++|+++|++++|||++||+|+ +|||.++|++||
T Consensus 80 ~~~~--------~~~~~~~~Fq~~Faa~t~~IvsGAvaeR~kf~a~lif~~l~~~~vY~~~ahwvW~-~GwL~~lG~~DF 150 (399)
T 2b2h_A 80 SGVK--------GEDLLFMMYQMMFAAVTIAILTSAIAERAKVSSFILLSALWLTFVYAPFAHWLWG-GGWLAKLGALDF 150 (399)
T ss_dssp TTCC--------THHHHHHHHHHHHHHHHHHHHGGGGTTTBCHHHHHHHHHHHHHHTHHHHHHHHHS-SCHHHHTTCCCS
T ss_pred cCCC--------CCchhHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHhhhhhhheEC-chhHHhcCCccc
Confidence 2210 0126789999999999999999999999999999999999999999999999999 999999999999
Q ss_pred CCCchhhhhHHHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHHHHHHHhhhhhccCCCCCCCcchhhHHHHHHHHHHHH
Q 044779 182 SGGFVIHLSSGVAGFTAAYWVGPRATKDRERFPPNNILLMLAGAGLLWMGWTGFNGGDPYNAGTDASLAVLNTHVCTATS 261 (477)
Q Consensus 182 aG~~vVH~~gG~~aL~~a~~lG~R~g~~~~~~~~hs~~~~~lGt~lLw~GW~gFN~gs~~~~~~~~~~a~~NT~la~a~g 261 (477)
|||++||++||++||+++++||||++|++++++|||++++++|+++||+||||||+||++..+.++.++++||++|+++|
T Consensus 151 AGs~vVH~~gG~~aL~~a~~LG~R~g~~~~~~~~hn~~~~~lG~~lLW~GWfGFN~GS~l~~~~~a~~a~~nT~lAaaag 230 (399)
T 2b2h_A 151 AGGMVVHISSGFAALAVAMTIGKRAGFEEYSIEPHSIPLTLIGAALLWFGWFGFNGGSALAANDVAINAVVVTNTSAAVA 230 (399)
T ss_dssp SCTTTTHHHHHHHHHHHHHHHCCCTTTTTSCCCCSCHHHHHHHHHHHHHHHHHHHHGGGSSSSHHHHHHHHHHHHHHHHH
T ss_pred cCCeEEEechhHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcHHhhccccchhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999888899999999999999999999999999999988888999999999999999
Q ss_pred HHHHHHHHHHhhCCCchhhhhhhhhccceeecCCCCCcchHHHHHHHHhhhhHHHHHHHHHhhhcCcccccccccCcccc
Q 044779 262 LLTWLILDILFFGKPSVIGATQGMITGLVCITPAAGVVQGWAAILMGMMSGSIPWYTMMVLHKKIPMLKRVDDTMAVFHT 341 (477)
Q Consensus 262 ~lt~~~~~~~~~~k~s~~~~~nG~LaGlVaIta~~~~v~pw~A~iiG~vag~i~~~~~~~l~~~l~~~l~IDD~~~v~~v 341 (477)
+++|+++++++ ||+|+..++||+|||||||||+|++++||+|++||+++|++|+++. .+++| +|||||||++++
T Consensus 231 ~l~~~~~~~~~-gk~~~~~~~nG~lAGLVaITa~~~~v~p~~A~iiG~iag~i~~~~~-~l~~k----l~iDD~l~a~~v 304 (399)
T 2b2h_A 231 GFVWMVIGWIK-GKPGSLGIVSGAIAGLAAITPAAGFVDVKGAIVIGLVAGIVCYLAM-DFRIK----KKIDESLDAWAI 304 (399)
T ss_dssp HHHHHHHHHHH-SCCCHHHHHHHHHHHHHHHTTTTTTCCHHHHHHHHHHHHHHHHHHH-HHHHH----TTCCCTTCHHHH
T ss_pred HHHHHHHHHHH-cCCCHHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHHHHHHHHH-HHHHH----cCCCCCCCceec
Confidence 99999999999 9999999999999999999999999999999999999999999998 44444 899999999999
Q ss_pred cccchhhhhhhhhhhcCccccchhcccCCcccccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044779 342 HAVAGSLGGILAGFFANPKLNRIFYLVDDWEHYIGLAYGFQSNRASAGFRQMGVQLLGISFVIALNIFTTSVICVLIRIV 421 (477)
Q Consensus 342 Hg~~Gi~G~i~~glfa~~~~~~~~~~~~~~~~~~Gl~~g~~~~~~~~~~~ql~~Ql~g~~v~~~~s~~~~~i~~~ilk~~ 421 (477)
||+||+||++++++|++++..+ .+ |++|+ +++|++.|+++++++++|+++.++++++++|++
T Consensus 305 Hgv~Gi~G~l~~glfa~~~~~g-------~~---Gl~~g--------~~~ql~~Ql~g~~~~~~~~~v~~~i~~~il~~~ 366 (399)
T 2b2h_A 305 HGIGGLWGSVAVGILANPEVNG-------YA---GLLFG--------NPQLLVSQLIAVASTTAYAFLVTLILAKAVDAA 366 (399)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHS-------CC---CGGGT--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHccccccC-------CC---ccccC--------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999875421 12 78885 349999999999999999999999999999999
Q ss_pred cCCCCChHHHhcC-ChhhhchhcccccCC
Q 044779 422 VPLRLTDEELQTG-DDAIHGEEAYALWGD 449 (477)
Q Consensus 422 ~~LRv~~e~E~~G-D~~~hg~~ay~~~~~ 449 (477)
.+||+++|||++| |.+||||++||+.++
T Consensus 367 ~glRv~~e~E~~GlD~~~hg~~ay~~~~~ 395 (399)
T 2b2h_A 367 VGLRVSSQEEYVGLDLSQHEEVAYTLEHH 395 (399)
T ss_dssp TCSBCCHHHHHHCHHHHHHCCCSCC----
T ss_pred ccCCCCHHHHHhCCCHHHhCcccCCcccc
Confidence 9999999999999 999999999997654
No 2
>1u7g_A Probable ammonium transporter; right handed helical bundle, transmembrane helices, ammonia membrane protein, RH protein, transport protein; HET: MSE BOG; 1.40A {Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A* 1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A* 3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A 2nuu_A* 3c1j_A 2npk_A
Probab=100.00 E-value=1.2e-100 Score=791.01 Aligned_cols=381 Identities=35% Similarity=0.597 Sum_probs=351.1
Q ss_pred ccccchhHHHHHHHHHHHHHhH-HHHHhhhhcccccccHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCcccccCccc
Q 044779 21 WMSKADNAWQLTAATLVGLQSV-PGLVILYGSIVKKKWAVNSAFMALYAFAAVLVCWVGWGYQMSFGKKMIHFWGRPDVS 99 (477)
Q Consensus 21 ~~~~~d~~w~L~~~~lV~~~m~-~Gf~lleaG~vr~kn~~~~l~~~~~~~~v~~i~~~~~Gy~lafg~~~~~fiG~~~~~ 99 (477)
.+|..|+.|+|+|++|| ++|| |||+|+|+|+||+||++|+++||+.++++++++||++||+++||++ ++|+|..+++
T Consensus 4 ~~~~~d~~w~l~~~~LV-~~M~~~Gfa~~~~G~vR~KN~~n~l~k~~~~~~i~~i~w~~~Gy~lafg~~-~~~iG~~~~~ 81 (385)
T 1u7g_A 4 VADKADNAFMMICTALV-LFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGYSLASGEG-NNFFGNINWL 81 (385)
T ss_dssp CCCHHHHHHHHHHHHHH-HHHHTTHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSC-SSSCCCSTTG
T ss_pred ccccccHHHHHHHHHHH-HHHHHHHHHHHhcccccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CccccCcchh
Confidence 46789999999999999 9999 9999999999999999999999999999999999999999999987 6899986544
Q ss_pred ccchhhcccccCCCccchhhhHhHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhcceeeeeecCcccccccCce
Q 044779 100 LDENFLLSRAFAGYLPNATMVYFQFVFAAITLILIAGALLGRMNFHAWMLFVPLWLTFSYTIGAYSIWCPEGWLAKLGII 179 (477)
Q Consensus 100 ~~~~~~~~~~~~~~i~~~~~~~fq~~Fa~~a~~I~sGavaeR~~~~~~~i~~~l~~~~vYp~~~hwvW~~~GwL~~lG~~ 179 (477)
+..+...++ ..+++|+..+++||++||++|++|++||++||+|+.+|++|+++|++++|||++||+|+ +|||.++|++
T Consensus 82 ~l~~~~~~~-~~~~ip~~~~~~FQ~~Faa~t~~IvsGAvaeR~kf~a~lif~~l~~~~vY~~~ahwvW~-~GwL~~lG~~ 159 (385)
T 1u7g_A 82 MLKNIELTA-VMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFPAVLIFVVVWLTLSYIPIAHMVWG-GGLLASHGAL 159 (385)
T ss_dssp GGTTCCTTC-EETTEEHHHHHHHHHHHHHHHHHHHHHHHGGGBCHHHHHHHHHHHHHHTHHHHHHHHHS-SCHHHHHTCC
T ss_pred hccCCCCcc-cccCcchHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHhhhhhheeEc-chhhhhccee
Confidence 433321111 12468889999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred ecCCCchhhhhHHHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHHHHHHHhhhhhccCCCCCCCcchhhHHHHHHHHHH
Q 044779 180 DYSGGFVIHLSSGVAGFTAAYWVGPRATKDRERFPPNNILLMLAGAGLLWMGWTGFNGGDPYNAGTDASLAVLNTHVCTA 259 (477)
Q Consensus 180 DfaG~~vVH~~gG~~aL~~a~~lG~R~g~~~~~~~~hs~~~~~lGt~lLw~GW~gFN~gs~~~~~~~~~~a~~NT~la~a 259 (477)
|||||++||++||++||+++++||||++|++++++|||++++++|+++||+||||||+||++..+.++.++++||++|++
T Consensus 160 DFAGs~vVH~~gG~aaL~~a~~LG~R~g~~~~~~~~hn~~~~~lGt~lLW~GWfGFN~GS~l~~~~~a~~a~~nT~lAaa 239 (385)
T 1u7g_A 160 DFAGGTVVHINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVATA 239 (385)
T ss_dssp CSSCTTTTHHHHHHHHHHHHHHSCCCCCTTCSSCCGGGHHHHHHHHHHHHHHHHHHHHGGGSSSSHHHHHHHHHHHHHHH
T ss_pred eccCCeEEEecchHHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhhcchhhhhccchhHhHHHHHHHHHH
Confidence 99999999999999999999999999998888999999999999999999999999999999988889999999999999
Q ss_pred HHHHHHHHHHHHhhCCCchhhhhhhhhccceeecCCCCCcchHHHHHHHHhhhhHHHHHHHHHhhhcCcccccccccCcc
Q 044779 260 TSLLTWLILDILFFGKPSVIGATQGMITGLVCITPAAGVVQGWAAILMGMMSGSIPWYTMMVLHKKIPMLKRVDDTMAVF 339 (477)
Q Consensus 260 ~g~lt~~~~~~~~~~k~s~~~~~nG~LaGlVaIta~~~~v~pw~A~iiG~vag~i~~~~~~~l~~~l~~~l~IDD~~~v~ 339 (477)
+|+++|++++++++||+|+..++||+|||||||||+|++++||+|++||+++|++|+++.+++++| +|||||||++
T Consensus 240 ag~l~~~~~~~~~~gk~~~~~~~nG~lAGLVaITa~~~~v~p~~A~iiG~iag~i~~~~~~~l~~~----l~iDD~l~a~ 315 (385)
T 1u7g_A 240 AAILGWIFGEWALRGLPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTMLKRL----LRVDDPCDVF 315 (385)
T ss_dssp HHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHH----HCSCCGGGHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHhhhhhccCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHh----CCCCCCCCCE
Confidence 999999999999999999999999999999999999999999999999999999999999988765 8999999999
Q ss_pred cccccchhhhhhhhhhhcCccccchhcccCCcccccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044779 340 HTHAVAGSLGGILAGFFANPKLNRIFYLVDDWEHYIGLAYGFQSNRASAGFRQMGVQLLGISFVIALNIFTTSVICVLIR 419 (477)
Q Consensus 340 ~vHg~~Gi~G~i~~glfa~~~~~~~~~~~~~~~~~~Gl~~g~~~~~~~~~~~ql~~Ql~g~~v~~~~s~~~~~i~~~ilk 419 (477)
++||+||+||++++++|++++..+. +. +.|++|+ .|++.|+++++++++|+++.++++++++|
T Consensus 316 ~vHgv~Gi~G~l~~glfa~~~~~g~----~~---~~G~~~g----------~ql~~Ql~g~~~~~~~~~v~~~i~~~il~ 378 (385)
T 1u7g_A 316 GVHGVCGIVGCIMTGIFAASSLGGV----GF---AEGVTMG----------HQLLVQLESIAITIVWSGVVAFIGYKLAD 378 (385)
T ss_dssp HHHHHHHHHHHHHHHHHTSGGGTCC----CC---CTTCCHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccHHHHHHHHHhccccccCc----cc---cCCcchh----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998764211 00 1144332 69999999999999999999999999999
Q ss_pred HhcCCCC
Q 044779 420 IVVPLRL 426 (477)
Q Consensus 420 ~~~~LRv 426 (477)
++.+||+
T Consensus 379 ~~~glRv 385 (385)
T 1u7g_A 379 LTVGLRV 385 (385)
T ss_dssp HHTCSBC
T ss_pred HccCCcC
Confidence 9999997
No 3
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=100.00 E-value=1.4e-82 Score=658.88 Aligned_cols=363 Identities=19% Similarity=0.251 Sum_probs=303.4
Q ss_pred HHhHHHHHhhhhcccccccHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCcccccCcccccchhhcccccCCCccchh
Q 044779 39 LQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVLVCWVGWGYQMSFGKKMIHFWGRPDVSLDENFLLSRAFAGYLPNAT 118 (477)
Q Consensus 39 ~~m~~Gf~lleaG~vr~kn~~~~l~~~~~~~~v~~i~~~~~Gy~lafg~~~~~fiG~~~~~~~~~~~~~~~~~~~i~~~~ 118 (477)
.++.+||.++++++ |||..+.+.+|++..+ ..++|++++|.. +|.. ++++|..+
T Consensus 25 vMi~iGfGFL~~~L--rk~~~s~v~~n~l~~a-~~~QW~~l~~~~-------Gf~~----------------~g~ip~~~ 78 (407)
T 3b9w_A 25 AMLLVGFGFLMVFV--RRYGFSATTGTYLVVA-TGLPLYILLRAN-------GIFG----------------HALTPHSV 78 (407)
T ss_dssp HHHHHHHHHHGGGS--TTCHHHHHHHHHHHHH-HHHHHHHHHHHT-------TTTS----------------SCCCSSSH
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH-HHHHHHHHHhcc-------cccC----------------CCcchHHH
Confidence 45567999999998 9999999999998854 778999999821 1111 24688889
Q ss_pred hhHhHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhcceeeeeecCcccccccCceecCCCchhhhhHHHHHHHH
Q 044779 119 MVYFQFVFAAITLILIAGALLGRMNFHAWMLFVPLWLTFSYTIGAYSIWCPEGWLAKLGIIDYSGGFVIHLSSGVAGFTA 198 (477)
Q Consensus 119 ~~~fq~~Fa~~a~~I~sGavaeR~~~~~~~i~~~l~~~~vYp~~~hwvW~~~GwL~~lG~~DfaG~~vVH~~gG~~aL~~ 198 (477)
+++||++||++|++|++||++||+|+.+|++|+ +|.+++|||.+||+|+ +||+...|++|||||++||++||++||++
T Consensus 79 ~~~fq~~Faa~t~~IvsGAvaeR~kf~~~li~~-~~~~~vY~~~~~wvw~-gG~~~~~G~~DfAGs~vVH~~gG~~aLa~ 156 (407)
T 3b9w_A 79 DAVIYAEFAVATGLIAMGAVLGRLRVFQYALLA-LFIVPVYLLNEWLVLD-NASGLTEGFQDSAGSIAIHAFGAYFGLGV 156 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHH-HHHHHHHHHHHHHHTT-CTTSSCTTCCCTTCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHH-HHHHHhccceeEEEeC-CcchhhcceeeccCceEEEeCchHHHHHH
Confidence 999999999999999999999999999999997 6789999999999999 89987779999999999999999999999
Q ss_pred HHHHcCCCCCC-CCCCCCCcHHHHHHHHHHHHHhhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHH-hhCCC
Q 044779 199 AYWVGPRATKD-RERFPPNNILLMLAGAGLLWMGWTGFNGGDPYNAGTDASLAVLNTHVCTATSLLTWLILDIL-FFGKP 276 (477)
Q Consensus 199 a~~lG~R~g~~-~~~~~~hs~~~~~lGt~lLw~GW~gFN~gs~~~~~~~~~~a~~NT~la~a~g~lt~~~~~~~-~~~k~ 276 (477)
+++||||++|+ +++++|||++++++|+++||+||||||+| +..+.++.++++||++|+++|+++|++++++ ++||+
T Consensus 157 a~~LG~R~~~~~~~~~~~hn~~~~~lGt~lLW~GWfGFN~G--l~~~~~~~~a~~NT~lAaaag~l~~~~~~~~~~~gK~ 234 (407)
T 3b9w_A 157 SIALTTAAQRAQPIESDATSDRFSMLGSMVLWLFWPSFATA--IVPFEQMPQTIVNTLLALCGATLATYFLSALFHKGKA 234 (407)
T ss_dssp HHHHCCHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHT--TSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHhcCccccCCCCcCCCCCHHHHHHHHHHHHHHHHhhhhh--hccchhhHHHHHHhHHHHHHHHHHHHHHHHHHhCCCC
Confidence 99999997652 12389999999999999999999999999 4567789999999999999999999999987 78999
Q ss_pred chhhhhhhhhccceeecCCCCCcchHHHHHHHHhhhhHHHHHHHHHhhhcCcccccccccCcccccccchhhhhhhhhhh
Q 044779 277 SVIGATQGMITGLVCITPAAGVVQGWAAILMGMMSGSIPWYTMMVLHKKIPMLKRVDDTMAVFHTHAVAGSLGGILAGFF 356 (477)
Q Consensus 277 s~~~~~nG~LaGlVaIta~~~~v~pw~A~iiG~vag~i~~~~~~~l~~~l~~~l~IDD~~~v~~vHg~~Gi~G~i~~glf 356 (477)
|+..++||+|||||||||+|++++||+|++||++||++|+++++++++++++++|||||||++++||+||+||++++++|
T Consensus 235 ~~~~~~nG~LAGLVAITa~~~~v~p~~A~iIG~iaG~i~~~~~~~l~~~l~~~l~iDD~l~a~~vHgv~Gi~G~l~~glf 314 (407)
T 3b9w_A 235 SIVDMANAALAGGVAIGSVCNIVGPVGAFVIGLLGGAISVVGFVFIQPMLESKAKTIDTCGVHNLHGLPGLLGGFSAILI 314 (407)
T ss_dssp CHHHHHHHTTHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHSCCCCTTCHHHHTTHHHHHHHHHHHHH
T ss_pred CHHHHHHhhhhhhheeccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCeecchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888777777999999999999999999999999999
Q ss_pred cCccccchhcccCCcccccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHhcC--
Q 044779 357 ANPKLNRIFYLVDDWEHYIGLAYGFQSNRASAGFRQMGVQLLGISFVIALNIFTTSVICVLIRIVVPLRLTDEELQTG-- 434 (477)
Q Consensus 357 a~~~~~~~~~~~~~~~~~~Gl~~g~~~~~~~~~~~ql~~Ql~g~~v~~~~s~~~~~i~~~ilk~~~~LRv~~e~E~~G-- 434 (477)
+.+. . ..|++|++++++|+++.++++++++|+ |+++|+|..|
T Consensus 315 a~~~------------------------------~--~~Ql~g~~~~~~~s~v~~~i~~~il~~----r~~~e~e~~g~~ 358 (407)
T 3b9w_A 315 VPGI------------------------------A--VAQLTGIGITLALALIGGVIAGALIKL----TGTTKQAYEDSH 358 (407)
T ss_dssp STTC------------------------------H--HHHHHHHHHHHHHHHHHHHHHHHHHHT----TCCCSSTTCGGG
T ss_pred ccCC------------------------------c--HHHHHHHHHHHHHHHHHHHHHHHHHhC----CCCHHHHcCCcc
Confidence 7541 1 159999999999999999999999997 9999999998
Q ss_pred -------ChhhhchhcccccCCCCccccccccccccCCCCCcccCCC
Q 044779 435 -------DDAIHGEEAYALWGDGEKYESRINSAYGAEDFPPAVSKGK 474 (477)
Q Consensus 435 -------D~~~hg~~ay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (477)
|..||||++||++...+ ....+|.+|+++...|
T Consensus 359 ~we~p~ld~~~hg~~ayp~~~~~~-------~~~~~~r~~~~~~~~~ 398 (407)
T 3b9w_A 359 EFIHLAGPEDEHKAERLVLEAKTE-------IQGLKNRIDAAVLSAK 398 (407)
T ss_dssp TSSSCCCGGGC------------------------------------
T ss_pred cccCccccHHHhchhhccchhhhh-------ccccccCCChhhhccc
Confidence 89999999998763111 2334555665554433
No 4
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens}
Probab=100.00 E-value=5.4e-79 Score=642.53 Aligned_cols=408 Identities=20% Similarity=0.299 Sum_probs=323.5
Q ss_pred HHhHHHHHhhhhcccccccHHH-----------------HHHHHHHHHHHH-HHHHHHHhhhhhccCCCCcccccCcccc
Q 044779 39 LQSVPGLVILYGSIVKKKWAVN-----------------SAFMALYAFAAV-LVCWVGWGYQMSFGKKMIHFWGRPDVSL 100 (477)
Q Consensus 39 ~~m~~Gf~lleaG~vr~kn~~~-----------------~l~~~~~~~~v~-~i~~~~~Gy~lafg~~~~~fiG~~~~~~ 100 (477)
++.|..++.+++-++|+++..+ .....+..++++ +|++..+||.++|-+++ +|.+...+++
T Consensus 21 ~~~q~~~ivlf~~fv~y~~~~~~~~~~~~~~~~~~~~~~~~~~~Yp~fqDv~vMi~~GfGFLmtflkry-g~ssv~~n~l 99 (490)
T 3hd6_A 21 LLLQVIMVILFGVFVRYDFEADAHWWSERTHKNLSDMENEFYYRYPSFQDVHVMVFVGFGFLMTFLQRY-GFSAVGFNFL 99 (490)
T ss_dssp HHHHHHHHHHHHHHEECCCC------------------CHHHHHHHHHHHHHHHHHTHHHHHGGGSTTC-HHHHHHHHHH
T ss_pred HHHHHHHHHhhheeEEecCCCCccccccccccccccccchhhhcCccchhHHHHHHHHHHHHHHHHHHh-ccHHHHHHHH
Confidence 6678889999999999964321 244568899999 89999999999999987 4444433332
Q ss_pred -----------cchhhcccccCCCccchhhhHhHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhcceeeeeecC
Q 044779 101 -----------DENFLLSRAFAGYLPNATMVYFQFVFAAITLILIAGALLGRMNFHAWMLFVPLWLTFSYTIGAYSIWCP 169 (477)
Q Consensus 101 -----------~~~~~~~~~~~~~i~~~~~~~fq~~Fa~~a~~I~sGavaeR~~~~~~~i~~~l~~~~vYp~~~hwvW~~ 169 (477)
.++++ ...+++++|..++++||++||++|++|++||++||+|+.+|++|+++ .+++||+. ||+
T Consensus 100 ~~a~~~Qwa~l~~g~~-~~~~~g~ip~~~~~~fq~~Faa~t~~IvsGAvaeR~k~~~~li~~~l-~~~vY~~~-~w~--- 173 (490)
T 3hd6_A 100 LAAFGIQWALLMQGWF-HFLQDRYIVVGVENLINADFCVASVCVAFGAVLGKVSPIQLLIMTFF-QVTLFAVN-EFI--- 173 (490)
T ss_dssp HHHHHHHHHHHHHHHT-TCBTTTBEECCHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHH-HHHHHHHH-HHH---
T ss_pred HHHHHHHHHHHHHHHh-ccccCCCccHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH-HHHHHhhh-HHH---
Confidence 12221 22236789999999999999999999999999999999999999866 57899985 555
Q ss_pred cccccccCceecCCCchhhhhHHHHHHHHHHHHcCCC---CCCCCCCCCCcHHHHHHHHHHHHHhhhhhccCCCCCCCcc
Q 044779 170 EGWLAKLGIIDYSGGFVIHLSSGVAGFTAAYWVGPRA---TKDRERFPPNNILLMLAGAGLLWMGWTGFNGGDPYNAGTD 246 (477)
Q Consensus 170 ~GwL~~lG~~DfaG~~vVH~~gG~~aL~~a~~lG~R~---g~~~~~~~~hs~~~~~lGt~lLw~GW~gFN~gs~~~~~~~ 246 (477)
||.++|++|||||++||++||++||+++++||||. ++.+++.+|||++++++|+++||+||||||+|++.. +..
T Consensus 174 --~L~~lG~~DFAGs~vVH~~gG~aaLa~a~vLG~R~~~~~~~~~~~~~hn~~~a~LGt~lLW~GWfGFN~gs~~~-~~~ 250 (490)
T 3hd6_A 174 --LLNLLKVKDAGGSMTIHTFGAYFGLTVTRILYRRNLEQSKERQNSVYQSDLFAMIGTLFLWMYWPSFNSAISYH-GDS 250 (490)
T ss_dssp --HHTTSCCCCTTCTTTTHHHHHHHHHHHHHHTCCTTGGGGTTTSSCCHHHHHHHHHHHHHHHHHHHHHTTTTCSS-HHH
T ss_pred --HHhccCceeecCceeeeHHHHHHHHHHHHhcCCcccccCCCCCCCCCCCHHHHHHHHHHHHHHHHhhchhhhcc-chH
Confidence 67899999999999999999999999999999984 345567889999999999999999999999998753 456
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH--hhCCCchhhhhhhhhccceeecCCCC-CcchHHHHHHHHhhhhHHHHHHHHHh
Q 044779 247 ASLAVLNTHVCTATSLLTWLILDIL--FFGKPSVIGATQGMITGLVCITPAAG-VVQGWAAILMGMMSGSIPWYTMMVLH 323 (477)
Q Consensus 247 ~~~a~~NT~la~a~g~lt~~~~~~~--~~~k~s~~~~~nG~LaGlVaIta~~~-~v~pw~A~iiG~vag~i~~~~~~~l~ 323 (477)
+.++++||++|+|+|+++|++++++ ++||+|+.+++||+|||||||||+|+ +++||+|++||++||++|+++++++.
T Consensus 251 ~~~a~~NT~lAaAag~lt~~~~s~l~~~~gK~s~~~~~nG~LAGLVAIT~~a~~~v~P~~AliIG~iaG~i~~~~~~~l~ 330 (490)
T 3hd6_A 251 QHRAAINTYCSLAACVLTSVAISSALHKKGKLDMVHIQNATLAGGVAVGTAAEMMLMPYGALIIGFVCGIISTLGFVYLT 330 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCCHHHHHHGGGHHHHHTTTTTTTCSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHhhhceeeeEEEEccCcccccCHHHHHHHHHHHHHHHHHHHHHhH
Confidence 8899999999999999999999987 57899999999999999999999999 69999999999999999999998876
Q ss_pred hhcCcccccccccCcccccccchhhhhhhhhhhcCccccchhcccCCccccccccccc-----ccccccchhhHHHHHHH
Q 044779 324 KKIPMLKRVDDTMAVFHTHAVAGSLGGILAGFFANPKLNRIFYLVDDWEHYIGLAYGF-----QSNRASAGFRQMGVQLL 398 (477)
Q Consensus 324 ~~l~~~l~IDD~~~v~~vHg~~Gi~G~i~~glfa~~~~~~~~~~~~~~~~~~Gl~~g~-----~~~~~~~~~~ql~~Ql~ 398 (477)
+++++++|||||||++++||+||+||++++++|+....... + +.+ |++|-. ..++ ++.+|++.|++
T Consensus 331 ~~l~~kl~iDD~lgv~~vHGv~Gi~G~l~~glfa~~~~~~~-~---g~~---Gl~~~f~~~~~~gg~--~~~~ql~~Ql~ 401 (490)
T 3hd6_A 331 PFLESRLHIQDTCGINNLHGIPGIIGGIVGAVTAASASLEV-Y---GKE---GLVHSFDFQGFNGDW--TARTQGKFQIY 401 (490)
T ss_dssp HHHHHHHCCCCTTCHHHHTHHHHHHHHHHHHHHHHC-----------------------------CH--HHHHHHHHHHH
T ss_pred HHHHHHCCCCccccchHHhhHHHHHHHHHHHHHhccccccc-c---ccC---cceeccccccccCCc--chHHHHHHHHH
Confidence 55666699999999999999999999999999986532110 0 112 665410 0001 13589999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHhcC-ChhhhchhcccccCCCCccccccccccccCCCC
Q 044779 399 GISFVIALNIFTTSVICVLIRIVVPLRLTDEELQTG-DDAIHGEEAYALWGDGEKYESRINSAYGAEDFP 467 (477)
Q Consensus 399 g~~v~~~~s~~~~~i~~~ilk~~~~LRv~~e~E~~G-D~~~hg~~ay~~~~~~~~~~~~~~~~~~~~~~~ 467 (477)
|++++++|+++.++++++++|++.++|+++|+|..| |..|+.++.|+++.- .-+.+|+.+...++.|
T Consensus 402 gv~~~~~~a~v~~~ii~~iLk~~~~lRvs~e~e~~g~d~we~p~~~~~~~~~--~~~~~~~~~~~~~~~~ 469 (490)
T 3hd6_A 402 GLLVTLAMALMGGIIVGLILRLPFWGQPSDENCFEDAVYWEMPEGNSTVYIP--EDPTFKPSGPSVPSVP 469 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSTTSCCCCTTSTTCGGGTSCCCTTTC-----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHhCCCceeecCcccccccCC--CCcccCCccccccccc
Confidence 999999999999999999999999999999999999 999999998875432 1223355555566666
No 5
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=69.48 E-value=43 Score=34.41 Aligned_cols=143 Identities=15% Similarity=0.077 Sum_probs=83.2
Q ss_pred cccchhHHHHHHHHHHHHHhHHHHHhhhhcccccccHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCcccccCccccc
Q 044779 22 MSKADNAWQLTAATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVLVCWVGWGYQMSFGKKMIHFWGRPDVSLD 101 (477)
Q Consensus 22 ~~~~d~~w~L~~~~lV~~~m~~Gf~lleaG~vr~kn~~~~l~~~~~~~~v~~i~~~~~Gy~lafg~~~~~fiG~~~~~~~ 101 (477)
+.+-+..+.++.+.+. ++--+| |.+|+........++++..++.+.+.+.|.++-+-+-.++-.
T Consensus 172 ~~~hn~~~~~lGt~lL-W~GWfG---FN~Gl~~~~~~~~a~~NT~lAaaag~l~~~~~~~~~~~gK~~------------ 235 (407)
T 3b9w_A 172 SDATSDRFSMLGSMVL-WLFWPS---FATAIVPFEQMPQTIVNTLLALCGATLATYFLSALFHKGKAS------------ 235 (407)
T ss_dssp CCHHHHHHHHHHHHHH-HHHHHH---HHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCC------------
T ss_pred CCCCCHHHHHHHHHHH-HHHHHh---hhhhhccchhhHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCC------------
Confidence 5556666777777665 664444 566644334455677777888888899998776654222210
Q ss_pred chhhcccccCCCccchhhhHhHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhcceeeeeecCcccc-cccCcee
Q 044779 102 ENFLLSRAFAGYLPNATMVYFQFVFAAITLILIAGALLGRMNFHAWMLFVPLWLTFSYTIGAYSIWCPEGWL-AKLGIID 180 (477)
Q Consensus 102 ~~~~~~~~~~~~i~~~~~~~fq~~Fa~~a~~I~sGavaeR~~~~~~~i~~~l~~~~vYp~~~hwvW~~~GwL-~~lG~~D 180 (477)
+..+.+ .+.+-.....+-++=.++..-++.. +++++++.....+. .-+| .++++.|
T Consensus 236 ----------------~~~~~n---G~LAGLVAITa~~~~v~p~~A~iIG-~iaG~i~~~~~~~l---~~~l~~~l~iDD 292 (407)
T 3b9w_A 236 ----------------IVDMAN---AALAGGVAIGSVCNIVGPVGAFVIG-LLGGAISVVGFVFI---QPMLESKAKTID 292 (407)
T ss_dssp ----------------HHHHHH---HTTHHHHHHTTTTTTSCHHHHHHHH-HHHHHHHHHHHHTH---HHHHHHHSCCCC
T ss_pred ----------------HHHHHH---hhhhhhheeccCCCCCCHHHHHHHH-HHHHHHHHHHHHHH---HHHHHhcCCCCC
Confidence 000111 1112222222233446666666665 34555544322221 1223 3589999
Q ss_pred cCCCchhhhhHHHHHHHHHHHHc
Q 044779 181 YSGGFVIHLSSGVAGFTAAYWVG 203 (477)
Q Consensus 181 faG~~vVH~~gG~~aL~~a~~lG 203 (477)
--|...||.++|..|..++-+..
T Consensus 293 ~l~a~~vHgv~Gi~G~l~~glfa 315 (407)
T 3b9w_A 293 TCGVHNLHGLPGLLGGFSAILIV 315 (407)
T ss_dssp TTCHHHHTTHHHHHHHHHHHHHS
T ss_pred CCCCeecchHHHHHHHHHHHHHc
Confidence 99999999999999988876664
No 6
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens}
Probab=45.19 E-value=1.2e+02 Score=31.80 Aligned_cols=144 Identities=14% Similarity=0.083 Sum_probs=80.0
Q ss_pred ccccchhHHHHHHHHHHHHHhHHHHHhhhhcccccc-cHHHHHHHHHHHHHHHHHHHHHHhhhhh-ccCCCCcccccCcc
Q 044779 21 WMSKADNAWQLTAATLVGLQSVPGLVILYGSIVKKK-WAVNSAFMALYAFAAVLVCWVGWGYQMS-FGKKMIHFWGRPDV 98 (477)
Q Consensus 21 ~~~~~d~~w~L~~~~lV~~~m~~Gf~lleaG~vr~k-n~~~~l~~~~~~~~v~~i~~~~~Gy~la-fg~~~~~fiG~~~~ 98 (477)
.+..-+..+.++.+.+. ++--+|| .+|+.... ....++++..++.+.+.+.|.++-+-.. .++-.
T Consensus 217 ~~~~hn~~~a~LGt~lL-W~GWfGF---N~gs~~~~~~~~~a~~NT~lAaAag~lt~~~~s~l~~~~gK~s--------- 283 (490)
T 3hd6_A 217 NSVYQSDLFAMIGTLFL-WMYWPSF---NSAISYHGDSQHRAAINTYCSLAACVLTSVAISSALHKKGKLD--------- 283 (490)
T ss_dssp SCCHHHHHHHHHHHHHH-HHHHHHH---TTTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCC---------
T ss_pred CCCCCCHHHHHHHHHHH-HHHHHhh---chhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC---------
Confidence 34455666777777766 7776665 46766432 3345666777888888999987755431 12100
Q ss_pred cccchhhcccccCCCccchhhhHhHHHHHHHHHHHHHhhhhc-ccchhHHHHHHHHHHHhhhcceeeeeecCcccc-ccc
Q 044779 99 SLDENFLLSRAFAGYLPNATMVYFQFVFAAITLILIAGALLG-RMNFHAWMLFVPLWLTFSYTIGAYSIWCPEGWL-AKL 176 (477)
Q Consensus 99 ~~~~~~~~~~~~~~~i~~~~~~~fq~~Fa~~a~~I~sGavae-R~~~~~~~i~~~l~~~~vYp~~~hwvW~~~GwL-~~l 176 (477)
+..+.+ ++.+-....++-++ =..+..-++.. +++++++.....+. .-+| .++
T Consensus 284 -------------------~~~~~n---G~LAGLVAIT~~a~~~v~P~~AliIG-~iaG~i~~~~~~~l---~~~l~~kl 337 (490)
T 3hd6_A 284 -------------------MVHIQN---ATLAGGVAVGTAAEMMLMPYGALIIG-FVCGIISTLGFVYL---TPFLESRL 337 (490)
T ss_dssp -------------------HHHHHH---GGGHHHHHTTTTTTTCSCHHHHHHHH-HHHHHHHHHHHHHH---HHHHHHHH
T ss_pred -------------------HHHhhh---ceeeeEEEEccCcccccCHHHHHHHH-HHHHHHHHHHHHHh---HHHHHHHC
Confidence 000111 11111111222223 24455555554 33444443322111 1123 478
Q ss_pred CceecCCCchhhhhHHHHHHHHHHHHc
Q 044779 177 GIIDYSGGFVIHLSSGVAGFTAAYWVG 203 (477)
Q Consensus 177 G~~DfaG~~vVH~~gG~~aL~~a~~lG 203 (477)
++.|--|...||..+|+.|..++-+..
T Consensus 338 ~iDD~lgv~~vHGv~Gi~G~l~~glfa 364 (490)
T 3hd6_A 338 HIQDTCGINNLHGIPGIIGGIVGAVTA 364 (490)
T ss_dssp CCCCTTCHHHHTHHHHHHHHHHHHHHH
T ss_pred CCCccccchHHhhHHHHHHHHHHHHHh
Confidence 999999999999999999988776554
No 7
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=42.13 E-value=2.9e+02 Score=28.07 Aligned_cols=138 Identities=16% Similarity=0.114 Sum_probs=85.0
Q ss_pred ccccchhHHHHHHHHHHHHHhHHHHHhhhhccccccc--HHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCcccccCcc
Q 044779 21 WMSKADNAWQLTAATLVGLQSVPGLVILYGSIVKKKW--AVNSAFMALYAFAAVLVCWVGWGYQMSFGKKMIHFWGRPDV 98 (477)
Q Consensus 21 ~~~~~d~~w~L~~~~lV~~~m~~Gf~lleaG~vr~kn--~~~~l~~~~~~~~v~~i~~~~~Gy~lafg~~~~~fiG~~~~ 98 (477)
.+.+-+..+.++.+.+. ++--+| |.+|..-..| ...++++..++.+.+.+.|.++-|-. ++-.
T Consensus 181 ~~~~hn~~~~~lG~~lL-W~GWfG---FN~GS~l~~~~~a~~a~~nT~lAaaag~l~~~~~~~~~--gk~~--------- 245 (399)
T 2b2h_A 181 SIEPHSIPLTLIGAALL-WFGWFG---FNGGSALAANDVAINAVVVTNTSAAVAGFVWMVIGWIK--GKPG--------- 245 (399)
T ss_dssp CCCCSCHHHHHHHHHHH-HHHHHH---HHHGGGSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SCCC---------
T ss_pred CCCCCCHHHHHHHHHHH-HHHHHh---hcHHhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHH--cCCC---------
Confidence 45566777778777766 666555 4566554433 34566677888888899998876654 3210
Q ss_pred cccchhhcccccCCCccchhhhHhHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhcceeeeeecCcccccccCc
Q 044779 99 SLDENFLLSRAFAGYLPNATMVYFQFVFAAITLILIAGALLGRMNFHAWMLFVPLWLTFSYTIGAYSIWCPEGWLAKLGI 178 (477)
Q Consensus 99 ~~~~~~~~~~~~~~~i~~~~~~~fq~~Fa~~a~~I~sGavaeR~~~~~~~i~~~l~~~~vYp~~~hwvW~~~GwL~~lG~ 178 (477)
. ....+ .+.+-.....+-++=.++..-++..+ ++++++.... + ...++++
T Consensus 246 ---------------~----~~~~n---G~lAGLVaITa~~~~v~p~~A~iiG~-iag~i~~~~~-~------l~~kl~i 295 (399)
T 2b2h_A 246 ---------------S----LGIVS---GAIAGLAAITPAAGFVDVKGAIVIGL-VAGIVCYLAM-D------FRIKKKI 295 (399)
T ss_dssp ---------------H----HHHHH---HHHHHHHHHTTTTTTCCHHHHHHHHH-HHHHHHHHHH-H------HHHHTTC
T ss_pred ---------------H----HHHHH---HHHHhhhhhccccccCCHHHHHHHHH-HHHHHHHHHH-H------HHHHcCC
Confidence 0 00111 22222222233345566776666653 4555544322 1 2457899
Q ss_pred eecCCCchhhhhHHHHHHHHHHHHc
Q 044779 179 IDYSGGFVIHLSSGVAGFTAAYWVG 203 (477)
Q Consensus 179 ~DfaG~~vVH~~gG~~aL~~a~~lG 203 (477)
.|--+...||..+|..|..++-+..
T Consensus 296 DD~l~a~~vHgv~Gi~G~l~~glfa 320 (399)
T 2b2h_A 296 DESLDAWAIHGIGGLWGSVAVGILA 320 (399)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCceeccchhhHHHHHHHHHHc
Confidence 9999999999999999988876664
No 8
>1u7g_A Probable ammonium transporter; right handed helical bundle, transmembrane helices, ammonia membrane protein, RH protein, transport protein; HET: MSE BOG; 1.40A {Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A* 1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A* 3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A 2nuu_A* 3c1j_A 2npk_A
Probab=18.30 E-value=7.4e+02 Score=24.91 Aligned_cols=142 Identities=13% Similarity=0.079 Sum_probs=86.3
Q ss_pred cccccchhHHHHHHHHHHHHHhHHHHHhhhhccccccc--HHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCcccccCc
Q 044779 20 EWMSKADNAWQLTAATLVGLQSVPGLVILYGSIVKKKW--AVNSAFMALYAFAAVLVCWVGWGYQMSFGKKMIHFWGRPD 97 (477)
Q Consensus 20 ~~~~~~d~~w~L~~~~lV~~~m~~Gf~lleaG~vr~kn--~~~~l~~~~~~~~v~~i~~~~~Gy~lafg~~~~~fiG~~~ 97 (477)
+.+.+-+..+.++.+.+. ++--+| |.+|..-..| ...++++..++.+.+.+.|.++-|-. .++-
T Consensus 191 ~~~~~hn~~~~~lGt~lL-W~GWfG---FN~GS~l~~~~~a~~a~~nT~lAaaag~l~~~~~~~~~-~gk~--------- 256 (385)
T 1u7g_A 191 EAFKPHNLPMVFTGTAIL-YIGWFG---FNAGSAGTANEIAALAFVNTVVATAAAILGWIFGEWAL-RGLP--------- 256 (385)
T ss_dssp SSCCGGGHHHHHHHHHHH-HHHHHH---HHHGGGSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HSSC---------
T ss_pred CCCCCCCHHHHHHHHHHH-HHHHhh---hcchhhhhccchhHhHHHHHHHHHHHHHHHHHHHHHHH-cCCC---------
Confidence 445667777888887766 766655 4555544333 33566677888888899998775541 1210
Q ss_pred ccccchhhcccccCCCccchhhhHhHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhcceeeeeecCcccccccC
Q 044779 98 VSLDENFLLSRAFAGYLPNATMVYFQFVFAAITLILIAGALLGRMNFHAWMLFVPLWLTFSYTIGAYSIWCPEGWLAKLG 177 (477)
Q Consensus 98 ~~~~~~~~~~~~~~~~i~~~~~~~fq~~Fa~~a~~I~sGavaeR~~~~~~~i~~~l~~~~vYp~~~hwvW~~~GwL~~lG 177 (477)
... -..+ .+.+-.....+-++-.++..-++.. +++++++.....+. ..+++
T Consensus 257 ------------------~~~-~~~n---G~lAGLVaITa~~~~v~p~~A~iiG-~iag~i~~~~~~~l------~~~l~ 307 (385)
T 1u7g_A 257 ------------------SLL-GACS---GAIAGLVGVTPACGYIGVGGALIIG-VVAGLAGLWGVTML------KRLLR 307 (385)
T ss_dssp ------------------CHH-HHHH---HHHHHHHHHTTTTTTSCHHHHHHHH-HHHHHHHHHHHHHH------HHHHC
T ss_pred ------------------CHH-HHHH---HHHHhhhhhccCCCCCCHHHHHHHH-hHHHHHHHHHHHHH------HHhCC
Confidence 000 0111 2222222233334567777777775 44555554422221 24789
Q ss_pred ceecCCCchhhhhHHHHHHHHHHHHcC
Q 044779 178 IIDYSGGFVIHLSSGVAGFTAAYWVGP 204 (477)
Q Consensus 178 ~~DfaG~~vVH~~gG~~aL~~a~~lG~ 204 (477)
+.|--+...||..+|..|..++-+...
T Consensus 308 iDD~l~a~~vHgv~Gi~G~l~~glfa~ 334 (385)
T 1u7g_A 308 VDDPCDVFGVHGVCGIVGCIMTGIFAA 334 (385)
T ss_dssp SCCGGGHHHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCCEeecccccHHHHHHHHHhcc
Confidence 999999999999999999888877643
No 9
>4ezc_A UREA transporter 1; membrane protein, channel, SLC14, structural genomics, PSI-biology, NEW YORK consortium on membrane PROT structure, nycomps; HET: BGC BOG SPL; 2.36A {Bos taurus} PDB: 4ezd_A*
Probab=8.82 E-value=4.1e+02 Score=26.89 Aligned_cols=70 Identities=19% Similarity=0.285 Sum_probs=42.9
Q ss_pred hhhhhhhccceeecCCCCCcchHHHHHHHHhhhhHHHHHHHHHhhhcCcccccccccCcccccccchhhhhhhhhhhcCc
Q 044779 280 GATQGMITGLVCITPAAGVVQGWAAILMGMMSGSIPWYTMMVLHKKIPMLKRVDDTMAVFHTHAVAGSLGGILAGFFANP 359 (477)
Q Consensus 280 ~~~nG~LaGlVaIta~~~~v~pw~A~iiG~vag~i~~~~~~~l~~~l~~~l~IDD~~~v~~vHg~~Gi~G~i~~glfa~~ 359 (477)
..+|-.++|+.-.- +--+-+||.| +.++++.+++....+. ++.|+.-=.-.+||.+|.+-.++.+.|..+
T Consensus 65 ~f~~n~lsGlliLi-gl~i~sp~~a-l~allG~~vstltA~l--------lg~~~~~I~~GLyGfNg~Lvgial~~f~~~ 134 (384)
T 4ezc_A 65 VFVSNPISGILILV-GLLVQNPWCA-LNGCVGTVVSTLTALL--------LSQDRSAITAGLQGYNATLVGILMAIYSDK 134 (384)
T ss_dssp GTCCCHHHHHHHHH-HHHHHCHHHH-HHHHHHHHHHHHHHHH--------TTCCHHHHHHTTTTHHHHHHHHHHHHTBTT
T ss_pred EecCCcHHHHHHHH-HHHHhhHHHH-HHHHHHHHHHHHHHHH--------hCCCHHHHHcchhhhhHHHHHHHHHHHhcc
Confidence 34555666653211 1112356655 6777777777766544 345554445689999999999988877543
No 10
>2fd4_A Avirulence protein AVRPTOB; ring finger, U-BOX, ubiquitin ligase,; 1.80A {Pseudomonas syringae}
Probab=8.27 E-value=2e+02 Score=23.82 Aligned_cols=49 Identities=20% Similarity=0.248 Sum_probs=21.5
Q ss_pred CCChHHHhcC--Chhhhch-hccc-ccCCCCccccccccccccCCCCCcccCC
Q 044779 425 RLTDEELQTG--DDAIHGE-EAYA-LWGDGEKYESRINSAYGAEDFPPAVSKG 473 (477)
Q Consensus 425 Rv~~e~E~~G--D~~~hg~-~ay~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (477)
|.+.|.|..| |...|.. ++-. .|++....++++.--++----|...|++
T Consensus 22 kadaes~~~gFkDaAdh~~ddaT~CLFGe~LSL~np~qQVIGLA~~~td~~~~ 74 (122)
T 2fd4_A 22 KADAESEELGFKDAADHHTDDVTHCLFGGELSLSNPDQQVIGLAGNPTDTSQP 74 (122)
T ss_dssp CC------CCCCCCCC----CCCBCTTSSBCCTTCTTCCEEEEESSCCCTTSC
T ss_pred hhhhhhcccCcchhhhcCCCCcceecccCccccCCCCceeEEeecCCCCCccc
Confidence 4677899999 9998654 4333 4566555666555444433333333333
Done!