BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044780
         (220 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1ZXU|A Chain A, X-Ray Structure Of Protein From Arabidopsis Thaliana
           At5g01750
 pdb|2Q4M|A Chain A, Ensemble Refinement Of The Crystal Structure Of Protein
           From Arabidopsis Thaliana At5g01750
          Length = 217

 Score =  214 bits (544), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 110/202 (54%), Positives = 138/202 (68%), Gaps = 7/202 (3%)

Query: 2   AQQPSFGGAAANPVAVISSHHPIDLAIVRKVMIFSSGNFDVKDTNGNILFKVKNVFAFMR 61
           A  P  GG   +P     + +PID AIVRK    + GNF + D NGN+LFKVK     + 
Sbjct: 18  APTPQAGGVVVDPK--YCAPYPIDXAIVRKXXSLTDGNFVITDVNGNLLFKVKEPVFGLH 75

Query: 62  RRRVLLDGAGNPIATIREKAMSRHRRWQVFRGESSDPRDLIFSAKISSLWSFKTTKLNVF 121
            +RVLLDG+G P+ T+REK +S H RWQVFRG S+D RDL+++ K SS    K TKL+VF
Sbjct: 76  DKRVLLDGSGTPVVTLREKXVSXHDRWQVFRGGSTDQRDLLYTVKRSSXLQLK-TKLDVF 134

Query: 122 LANNTREDVCDFRVVEGSSWLFEPSSCTIYAGKSSAIVAQMLEKQTVKSIFLGKNNFMVT 181
           L +N  E  CDFRV    SWL    SC +YAG+S AIVAQ   K TV+S+FLGK+NF VT
Sbjct: 135 LGHNKDEKRCDFRV--KGSWL--ERSCVVYAGESDAIVAQXHRKHTVQSVFLGKDNFSVT 190

Query: 182 VHPNVDYAFIVALIVILDEINR 203
           V+PNVDYAFI +L+VILD++NR
Sbjct: 191 VYPNVDYAFIASLVVILDDVNR 212


>pdb|1BI8|A Chain A, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
          The Structures Cdk6-P19ink4d Inhibitor Complex
 pdb|1BI8|C Chain C, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
          The Structures Cdk6-P19ink4d Inhibitor Complex
 pdb|1BI7|A Chain A, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
          The Structure Of The Cdk6-P16ink4a Tumor Suppressor
          Complex
 pdb|1BLX|A Chain A, P19ink4dCDK6 COMPLEX
 pdb|1G3N|A Chain A, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
 pdb|1G3N|E Chain E, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
          Length = 326

 Score = 28.5 bits (62), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 5/41 (12%)

Query: 50 LFKVKNV-----FAFMRRRRVLLDGAGNPIATIREKAMSRH 85
          +FK +++     F  ++R RV     G P++TIRE A+ RH
Sbjct: 27 VFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRH 67


>pdb|3NUP|A Chain A, Cdk6 (Monomeric) In Complex With Inhibitor
 pdb|3NUX|A Chain A, Cdk6 (Monomeric) In Complex With Inhibitor
 pdb|4AUA|A Chain A, Liganded X-ray Crystal Structure Of Cyclin Dependent
          Kinase 6 (cdk6)
 pdb|4EZ5|A Chain A, Cdk6 (monomeric) In Complex With Inhibitor
          Length = 307

 Score = 28.1 bits (61), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 5/41 (12%)

Query: 50 LFKVKNV-----FAFMRRRRVLLDGAGNPIATIREKAMSRH 85
          +FK +++     F  ++R RV     G P++TIRE A+ RH
Sbjct: 27 VFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRH 67


>pdb|1JOW|B Chain B, Crystal Structure Of A Complex Of Human Cdk6 And A Viral
          Cyclin
 pdb|1XO2|B Chain B, Crystal Structure Of A Human Cyclin-Dependent Kinase 6
          Complex With A Flavonol Inhibitor, Fisetin
 pdb|2EUF|B Chain B, X-Ray Structure Of Human Cdk6-Vcyclin In Complex With
          The Inhibitor Pd0332991
 pdb|2F2C|B Chain B, X-Ray Structure Of Human Cdk6-Vcyclinwith The Inhibitor
          Aminopurvalanol
          Length = 308

 Score = 28.1 bits (61), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 5/41 (12%)

Query: 50 LFKVKNV-----FAFMRRRRVLLDGAGNPIATIREKAMSRH 85
          +FK +++     F  ++R RV     G P++TIRE A+ RH
Sbjct: 27 VFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRH 67


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.135    0.398 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,799,654
Number of Sequences: 62578
Number of extensions: 209896
Number of successful extensions: 447
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 441
Number of HSP's gapped (non-prelim): 10
length of query: 220
length of database: 14,973,337
effective HSP length: 95
effective length of query: 125
effective length of database: 9,028,427
effective search space: 1128553375
effective search space used: 1128553375
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.5 bits)