Query 044780
Match_columns 220
No_of_seqs 107 out of 475
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 06:42:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044780.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044780hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04525 Tub_2: Tubby C 2; In 100.0 7.3E-42 1.6E-46 283.5 18.0 171 21-197 11-187 (187)
2 COG4894 Uncharacterized conser 100.0 1.7E-35 3.7E-40 231.4 9.5 154 24-204 6-159 (159)
3 PF03803 Scramblase: Scramblas 99.7 4.6E-15 1E-19 125.6 20.9 170 22-204 20-220 (221)
4 KOG0621 Phospholipid scramblas 98.4 8E-06 1.7E-10 72.2 14.4 161 36-207 97-283 (292)
5 COG4894 Uncharacterized conser 98.4 1.1E-06 2.4E-11 69.6 7.6 104 16-123 22-138 (159)
6 PF04525 Tub_2: Tubby C 2; In 98.1 3E-05 6.6E-10 64.1 10.0 101 16-121 31-142 (187)
7 PF03803 Scramblase: Scramblas 96.5 0.038 8.3E-07 46.5 11.1 65 40-108 78-148 (221)
8 KOG0621 Phospholipid scramblas 69.4 16 0.00035 32.6 6.4 49 38-86 188-242 (292)
9 PF13860 FlgD_ig: FlgD Ig-like 63.0 18 0.00039 25.4 4.6 17 63-79 28-44 (81)
10 PF09008 Head_binding: Head bi 60.3 15 0.00032 28.0 3.8 59 14-79 46-105 (114)
11 KOG3950 Gamma/delta sarcoglyca 56.2 12 0.00025 32.7 3.0 9 177-185 262-270 (292)
12 PF04790 Sarcoglycan_1: Sarcog 56.1 25 0.00054 30.9 5.1 18 62-79 118-136 (264)
13 PF01167 Tub: Tub family; Int 51.1 1E+02 0.0023 26.6 8.2 74 72-153 7-87 (246)
14 COG4998 Predicted endonuclease 47.3 47 0.001 27.4 5.0 37 145-188 22-59 (209)
15 TIGR03784 marine_sortase sorta 41.4 51 0.0011 27.0 4.5 34 59-92 110-144 (174)
16 PRK15393 NUDIX hydrolase YfcD; 40.7 83 0.0018 25.5 5.7 56 39-94 11-73 (180)
17 PF02974 Inh: Protease inhibit 40.6 1.4E+02 0.0031 21.8 6.5 31 61-94 61-91 (99)
18 PF08269 Cache_2: Cache domain 37.4 7.5 0.00016 28.0 -0.9 37 39-75 58-94 (95)
19 cd06166 Sortase_D_5 Sortase D 36.2 67 0.0014 24.4 4.2 17 61-77 68-84 (126)
20 cd05828 Sortase_D_4 Sortase D 35.5 66 0.0014 24.5 4.1 33 60-92 64-96 (127)
21 PF15529 Toxin_49: Putative to 35.3 39 0.00084 24.8 2.6 19 38-56 30-48 (89)
22 PF06903 VirK: VirK protein; 34.6 1.6E+02 0.0034 22.1 5.8 40 16-56 39-79 (100)
23 PF07680 DoxA: TQO small subun 34.3 38 0.00082 26.7 2.6 36 51-86 36-73 (133)
24 TIGR02743 TraW type-F conjugat 33.8 59 0.0013 27.4 3.8 29 21-53 81-109 (202)
25 TIGR02150 IPP_isom_1 isopenten 32.9 1E+02 0.0022 24.3 5.0 52 40-91 1-60 (158)
26 cd03676 Nudix_hydrolase_3 Memb 32.3 1.8E+02 0.0038 23.3 6.4 60 35-94 2-72 (180)
27 PF11191 DUF2782: Protein of u 32.2 2.1E+02 0.0045 21.2 7.8 44 46-92 57-104 (105)
28 PRK13738 conjugal transfer pil 30.6 73 0.0016 27.0 3.9 29 21-53 79-107 (209)
29 PRK06655 flgD flagellar basal 30.5 73 0.0016 27.2 3.9 42 37-79 104-145 (225)
30 PRK10523 lipoprotein involved 29.2 1.1E+02 0.0023 26.6 4.7 53 22-80 57-115 (234)
31 PRK10523 lipoprotein involved 29.1 2.2E+02 0.0048 24.6 6.6 35 35-75 93-128 (234)
32 PF12690 BsuPI: Intracellular 28.8 42 0.00092 23.9 1.9 15 39-53 27-41 (82)
33 PF11589 DUF3244: Domain of un 28.7 71 0.0015 23.6 3.2 16 39-54 51-66 (106)
34 smart00634 BID_1 Bacterial Ig- 28.5 1.4E+02 0.003 21.2 4.6 11 65-75 25-35 (92)
35 PRK12816 flgG flagellar basal 27.3 64 0.0014 28.2 3.1 36 40-76 103-138 (264)
36 TIGR03406 FeS_long_SufT probab 27.3 1.1E+02 0.0023 25.2 4.2 30 23-58 23-52 (174)
37 PF04170 NlpE: NlpE N-terminal 25.9 1.5E+02 0.0033 21.1 4.4 12 61-72 51-62 (87)
38 PF11906 DUF3426: Protein of u 25.8 1.3E+02 0.0028 23.3 4.4 31 46-76 65-103 (149)
39 PRK12813 flgD flagellar basal 25.7 79 0.0017 27.1 3.3 16 63-78 127-142 (223)
40 PLN02552 isopentenyl-diphospha 24.0 2.1E+02 0.0046 24.8 5.7 57 37-93 22-91 (247)
41 PF09475 Dot_icm_IcmQ: Dot/Icm 23.1 27 0.0006 28.7 0.0 30 56-85 128-157 (179)
42 PRK12691 flgG flagellar basal 22.9 1.1E+02 0.0024 26.5 3.7 36 40-76 103-138 (262)
43 PF00845 Gemini_BL1: Geminivir 22.7 2.5E+02 0.0055 24.6 5.7 15 67-81 54-68 (276)
44 PF00384 Molybdopterin: Molybd 22.3 84 0.0018 28.4 3.0 31 174-204 156-187 (432)
45 COG5436 Predicted integral mem 22.0 4.1E+02 0.009 21.7 6.5 34 46-81 77-110 (182)
46 PRK12640 flgF flagellar basal 21.8 88 0.0019 27.0 2.9 37 39-76 87-123 (246)
47 PF13511 DUF4124: Domain of un 21.5 75 0.0016 20.6 1.9 19 37-55 13-31 (60)
48 PRK00122 rimM 16S rRNA-process 21.3 2.5E+02 0.0053 22.6 5.3 10 68-77 112-121 (172)
49 TIGR02488 flgG_G_neg flagellar 21.2 91 0.002 27.0 2.9 36 40-76 101-136 (259)
50 PF12119 DUF3581: Protein of u 21.1 5.3E+02 0.011 22.1 9.8 33 131-167 175-207 (218)
51 cd05830 Sortase_D_5 Sortase D 21.0 1.8E+02 0.0038 22.4 4.2 20 37-56 69-88 (137)
52 TIGR02171 Fb_sc_TIGR02171 Fibr 20.7 9.8E+02 0.021 25.0 10.5 118 46-185 318-442 (912)
53 TIGR02527 dot_icm_IcmQ Dot/Icm 20.7 40 0.00086 27.8 0.5 30 56-85 128-157 (182)
54 PF08904 DUF1849: Domain of un 20.3 3.8E+02 0.0083 23.4 6.5 64 11-79 4-72 (252)
55 PF09629 YorP: YorP protein; 20.1 1.3E+02 0.0029 20.5 2.8 27 27-54 32-58 (71)
56 cd00028 B_lectin Bulb-type man 20.0 3.6E+02 0.0079 19.8 6.2 12 39-50 66-77 (116)
No 1
>PF04525 Tub_2: Tubby C 2; InterPro: IPR007612 This is a family of plant and bacterial uncharacterised proteins.; PDB: 1ZXU_A 2Q4M_A.
Probab=100.00 E-value=7.3e-42 Score=283.48 Aligned_cols=171 Identities=35% Similarity=0.657 Sum_probs=104.5
Q ss_pred CccEEEEEEEeeeeEecCCeEEEcCCCCEEEEEEe-eccCccceEEEEcCCCCceEEEEeccccccceEEEEEcCCCCCC
Q 044780 21 HHPIDLAIVRKVMIFSSGNFDVKDTNGNILFKVKN-VFAFMRRRRVLLDGAGNPIATIREKAMSRHRRWQVFRGESSDPR 99 (220)
Q Consensus 21 ~~~~~l~vk~k~~s~~~~~f~V~D~~G~~vf~V~g-~~~s~~~k~~l~D~~G~pL~~i~~k~ls~~~~w~v~~g~~~~~~ 99 (220)
++|++|+||+|.+++++++|+|+|++|+++|+|+| +.+++++++.|+|++|+||++|++|.++++++|++|++++.+..
T Consensus 11 ~~~~~l~v~~k~~~~~~~~f~V~D~~G~~vf~V~g~~~~s~~~~~~l~D~~G~~L~~i~~k~~~l~~~w~i~~~~~~~~~ 90 (187)
T PF04525_consen 11 PQPVTLTVKKKSLSFSGDDFTVYDENGNVVFRVDGGKFFSIGKKRTLMDASGNPLFTIRRKLFSLRPTWEIYRGGGSEGK 90 (187)
T ss_dssp SS-EEEEEE----------EEEEETTS-EEEEEE--SCTTBTTEEEEE-TTS-EEEEEE--------EEEEEETT---GG
T ss_pred CCceEEEEEEEEeeecCCCEEEEcCCCCEEEEEEEecccCCCCEEEEECCCCCEEEEEEeeecccceEEEEEECCCCccC
Confidence 68999999999999989999999999999999999 89999999999999999999999999999999999999865455
Q ss_pred ceEEEEEEccccccccceEEEEEcCCC-----CCceeeEEEeecCCcCcCCCeeEEEeCCCCceeEEEEeeeeceeeecc
Q 044780 100 DLIFSAKISSLWSFKTTKLNVFLANNT-----REDVCDFRVVEGSSWLFEPSSCTIYAGKSSAIVAQMLEKQTVKSIFLG 174 (220)
Q Consensus 100 ~~l~tvkk~~~~~~~k~~~~V~~~~~~-----~~~~~~~~v~~G~~~~~~~~~~~I~~~~~~~~VAeV~rk~~~~~~~~g 174 (220)
+++|++|+++.+.. ++++.+++...+ .++.++|+| +| +|| +++|+|++. +|++||+|+||+..+.++.|
T Consensus 91 ~~i~tvkk~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~~i-~G-~~~--~~~~~I~~~-~g~~VA~i~rk~~~k~~~~~ 164 (187)
T PF04525_consen 91 KPIFTVKKKSMLQN-KDSFDVFLPPKSNISIDDSEGPDFEI-KG-NFW--DRSFTIYDS-GGRVVAEISRKYSSKKWFSG 164 (187)
T ss_dssp GEEEEEE-----------EEEEET--T----------SEEE-ES--TT--TT--EEEEC-C--EEEEEEE----------
T ss_pred ceEEEEEEecccCC-CcceeEEEecccceeecCCCCceEEE-EE-Eec--CcEEEEEEc-CCCEEEEEecccceeeEEec
Confidence 78999999866665 888899987432 356789999 99 999 999999953 38999999999887788999
Q ss_pred eeeEEEEEeCCCCHHHHHHHHHH
Q 044780 175 KNNFMVTVHPNVDYAFIVALIVI 197 (220)
Q Consensus 175 ~dty~v~V~pgvD~ali~alvi~ 197 (220)
+|+|.|+|+||+|++||+|||||
T Consensus 165 ~dty~l~V~pg~D~~lv~alvvi 187 (187)
T PF04525_consen 165 RDTYTLTVAPGVDQALVVALVVI 187 (187)
T ss_dssp B-SEEEEE-TTSBHHHHHHHHHH
T ss_pred CcEEEEEEcCCCCHHHheeEEeC
Confidence 99999999999999999999997
No 2
>COG4894 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.7e-35 Score=231.38 Aligned_cols=154 Identities=21% Similarity=0.383 Sum_probs=141.3
Q ss_pred EEEEEEEeeeeEecCCeEEEcCCCCEEEEEEeeccCccceEEEEcCCCCceEEEEeccccccceEEEEEcCCCCCCceEE
Q 044780 24 IDLAIVRKVMIFSSGNFDVKDTNGNILFKVKNVFAFMRRRRVLLDGAGNPIATIREKAMSRHRRWQVFRGESSDPRDLIF 103 (220)
Q Consensus 24 ~~l~vk~k~~s~~~~~f~V~D~~G~~vf~V~g~~~s~~~k~~l~D~~G~pL~~i~~k~ls~~~~w~v~~g~~~~~~~~l~ 103 (220)
.+|.||||++++ +++|.|+|..|+.+|+|+|+++++++.++|.|++|.+|.+|++|+++++++|+|-.|+ +. +|
T Consensus 6 ~tl~mkQk~~~~-gd~f~I~d~dgE~af~VeGs~f~i~dtlti~Da~G~~l~~i~~kll~l~~~yeI~d~~----g~-~~ 79 (159)
T COG4894 6 ITLFMKQKMFSF-GDAFHIYDRDGEEAFKVEGSFFSIGDTLTITDASGKTLVSIEQKLLSLLPRYEISDGG----GT-VC 79 (159)
T ss_pred HhHhhhhhhhhc-ccceEEECCCCcEEEEEeeeEEeeCceEEEEecCCCChHHHHHHHhhccceeEEEcCC----CC-EE
Confidence 478999999888 5699999999999999999999999999999999999999999999999999999987 23 88
Q ss_pred EEEEccccccccceEEEEEcCCCCCceeeEEEeecCCcCcCCCeeEEEeCCCCceeEEEEeeeeceeeecceeeEEEEEe
Q 044780 104 SAKISSLWSFKTTKLNVFLANNTREDVCDFRVVEGSSWLFEPSSCTIYAGKSSAIVAQMLEKQTVKSIFLGKNNFMVTVH 183 (220)
Q Consensus 104 tvkk~~~~~~~k~~~~V~~~~~~~~~~~~~~v~~G~~~~~~~~~~~I~~~~~~~~VAeV~rk~~~~~~~~g~dty~v~V~ 183 (220)
.++|+ ++|+|+++++.. .+|++ +| |+| +.+|++.++ ++++|+|+||| ++|+|||.|+|+
T Consensus 80 ~vrKK--~tf~Rdk~e~d~--------~~~ei-hG-Ni~--d~efkl~dg--~~~~aeVsKkw-----f~~rdTY~l~va 138 (159)
T COG4894 80 EVRKK--VTFSRDKFEIDG--------LNWEI-HG-NIW--DDEFKLTDG--ENVRAEVSKKW-----FSWRDTYHLQVA 138 (159)
T ss_pred EEEEE--EEEEeeeEEEcC--------CCeEE-ec-cee--ceEEEEecC--Cceehhheeee-----EeccceEEEEEc
Confidence 88887 677777777643 25999 99 999 999999999 78999999999 899999999999
Q ss_pred CCCCHHHHHHHHHHhhhhhhc
Q 044780 184 PNVDYAFIVALIVILDEINRA 204 (220)
Q Consensus 184 pgvD~ali~alvi~lD~~~~~ 204 (220)
|+.|..+|+++||++|++.++
T Consensus 139 pde~a~lii~i~VaLD~v~~~ 159 (159)
T COG4894 139 PDEDALLIIAIAVALDMVLYN 159 (159)
T ss_pred CchhhHHHHHHHHHHHHHhcC
Confidence 999999999999999999763
No 3
>PF03803 Scramblase: Scramblase ; InterPro: IPR005552 Scramblase is palmitoylated and contains a potential protein kinase C phosphorylation site. Scramblase exhibits Ca2+-activated phospholipid scrambling activity in vitro. There are also possible SH3 and WW binding motifs. Scramblase is involved in the redistribution of phospholipids after cell activation or injury [].
Probab=99.70 E-value=4.6e-15 Score=125.56 Aligned_cols=170 Identities=18% Similarity=0.248 Sum_probs=133.6
Q ss_pred ccEEEEEEEeeeeE-------ecCCeEEEcCCCCEEEEEEeecc---------CccceEEEEcCCCCceEEEEecccc--
Q 044780 22 HPIDLAIVRKVMIF-------SSGNFDVKDTNGNILFKVKNVFA---------FMRRRRVLLDGAGNPIATIREKAMS-- 83 (220)
Q Consensus 22 ~~~~l~vk~k~~s~-------~~~~f~V~D~~G~~vf~V~g~~~---------s~~~k~~l~D~~G~pL~~i~~k~ls-- 83 (220)
.--.++|+|+...+ ..+.|.|+|.+|+.+|.+....- ..+-+..|+|..|+++++|+|..--
T Consensus 20 ~~~~l~I~Q~~e~~e~~~~~e~~N~Y~I~n~~g~~i~~~~E~s~~~~R~~~~~~R~f~~~i~D~~g~~vl~i~Rp~~c~~ 99 (221)
T PF03803_consen 20 GLDQLLIKQQIEPLEIFTGFETPNRYDIKNPNGQQIYYAVEESDCCSRQCCGSHRPFKMHIYDNYGREVLTIERPFKCCS 99 (221)
T ss_pred CCCEEEEEEEEEEeceecccccCceEEEECCCCCEEEEEEEeCcceeeeecCCCCCEEEEEEecCCCEEEEEEcCCccee
Confidence 44577888887643 35799999999999998876521 1234678999999999999986421
Q ss_pred ----ccceEEEEEcCCCCCCceEEEEEEccccccccceEEEEEcCCCCCceeeEEEeecCCcC----cCCCeeEEEeCCC
Q 044780 84 ----RHRRWQVFRGESSDPRDLIFSAKISSLWSFKTTKLNVFLANNTREDVCDFRVVEGSSWL----FEPSSCTIYAGKS 155 (220)
Q Consensus 84 ----~~~~w~v~~g~~~~~~~~l~tvkk~~~~~~~k~~~~V~~~~~~~~~~~~~~v~~G~~~~----~~~~~~~I~~~~~ 155 (220)
...+.+|+.+. ++++.+|+++ +++++++|+|.-.+. ...+.| +| .+. +.+++|.|++.+
T Consensus 100 C~~~~~~~~~V~~p~----g~~iG~I~q~--~~~~~~~f~I~d~~~----~~~~~I-~g-p~~~~~~~~~~~F~I~~~~- 166 (221)
T PF03803_consen 100 CCPCCLQEMEVESPP----GNLIGSIRQP--FSCCRPNFDIFDANG----NPIFTI-KG-PCCCCSCCCDWEFEIKDPN- 166 (221)
T ss_pred cccccceeEEEecCC----CcEEEEEEEc--CcccceEEEEEECCC----ceEEEE-eC-Ccceeccccceeeeeeccc-
Confidence 13566776664 6899999987 788899999987653 467899 99 633 238999999963
Q ss_pred CceeEEEEeeee--ceeeecceeeEEEEEeCCCCH---HHHHHHHHHhhhhhhc
Q 044780 156 SAIVAQMLEKQT--VKSIFLGKNNFMVTVHPNVDY---AFIVALIVILDEINRA 204 (220)
Q Consensus 156 ~~~VAeV~rk~~--~~~~~~g~dty~v~V~pgvD~---ali~alvi~lD~~~~~ 204 (220)
|+.||+|+|+|. .++.+...|+|.|+..+..|. ++++|.++.||.++-+
T Consensus 167 ~~~vg~I~k~w~G~~~e~~t~~d~f~i~Fp~~l~~~~Kalll~a~~liD~~~Fe 220 (221)
T PF03803_consen 167 GQEVGSITKKWSGFCRELFTDADNFVIEFPPDLDVEQKALLLGAAFLIDYMYFE 220 (221)
T ss_pred CcEEEEEEEecCCcchhhccccceEEEEcCCCCCHHHHHHHHHHHHHhhhhhhc
Confidence 799999999996 346778899999999999885 7999999999998754
No 4
>KOG0621 consensus Phospholipid scramblase [Cell wall/membrane/envelope biogenesis]
Probab=98.43 E-value=8e-06 Score=72.25 Aligned_cols=161 Identities=16% Similarity=0.234 Sum_probs=109.8
Q ss_pred ecCCeEEEcCCCCEEEEEEeec---------cCccceEEEEcCCCCceEEEEeccccccc--------eEEEEEcCCCCC
Q 044780 36 SSGNFDVKDTNGNILFKVKNVF---------AFMRRRRVLLDGAGNPIATIREKAMSRHR--------RWQVFRGESSDP 98 (220)
Q Consensus 36 ~~~~f~V~D~~G~~vf~V~g~~---------~s~~~k~~l~D~~G~pL~~i~~k~ls~~~--------~w~v~~g~~~~~ 98 (220)
+.+.|.|.|.+|+.+|.+-... ...+-...++|.-|+++++++|...-... ..++-.+ .
T Consensus 97 t~NRY~v~~~~g~~v~~~~E~S~~~~Rq~~g~~RpF~~~i~D~~g~eVl~~~R~~~c~~~~c~~~~~~~~~v~~p----~ 172 (292)
T KOG0621|consen 97 TANRYVVHDMYGQPLYYAMERSNVFARQYLGTHRPFAMRIMDNFGQEVLTCKRPFPCCSSACALCLAQEIEIQSP----P 172 (292)
T ss_pred cCcEEEEEcCCcChhHHHHhhchHHHHHhhccCCcceeEeecccCcEEEEEeccccccccccccccccEEEEEcC----C
Confidence 5789999999999998554421 12345789999999999999998633221 1112111 2
Q ss_pred CceEEEEEEccccccccceEEEEEcCCCCCceeeEEEeecCCcC----cCCCeeEEEeCCCCceeEEEEeeee--ceeee
Q 044780 99 RDLIFSAKISSLWSFKTTKLNVFLANNTREDVCDFRVVEGSSWL----FEPSSCTIYAGKSSAIVAQMLEKQT--VKSIF 172 (220)
Q Consensus 99 ~~~l~tvkk~~~~~~~k~~~~V~~~~~~~~~~~~~~v~~G~~~~----~~~~~~~I~~~~~~~~VAeV~rk~~--~~~~~ 172 (220)
...+-++... +....++++|.-.. ....+.| +|..++ +++..|.+...++++.|++|.|+|. ..+.+
T Consensus 173 ~~~lG~v~q~--~~~~~~~f~i~~~~----~~~v~~v-~gp~~~~~~~~~d~~f~~~~~d~~~~vg~I~k~w~g~~rE~f 245 (292)
T KOG0621|consen 173 MGLLGKVLQT--WGCVNPNFHLWDRD----GNLVFLV-EGPRCCTFACCDDTVFFPKTTDNGRIVGSISRKWAGLVREAF 245 (292)
T ss_pred CceEEEEEEe--eccccceEEEEccc----ceeEEEE-EcCceeEEEeecCcceeEEEcCCCeEEEEEeecccchhhhhe
Confidence 3456555544 33446677775321 2345666 662122 1155666665556899999999996 45788
Q ss_pred cceeeEEEEEeCCCCH---HHHHHHHHHhhhhhhcCCC
Q 044780 173 LGKNNFMVTVHPNVDY---AFIVALIVILDEINRAGSG 207 (220)
Q Consensus 173 ~g~dty~v~V~pgvD~---ali~alvi~lD~~~~~~~~ 207 (220)
.+.|+|.|.---.+|. ++++|.++-||.+.-+.++
T Consensus 246 TDad~f~v~FPldLdvk~kavllga~flID~~~Fe~~~ 283 (292)
T KOG0621|consen 246 TDADTFVVHFPLDLDVKLKALLLGSTFLIDYMSFESRG 283 (292)
T ss_pred eccceeeEecCCcCCHHHHhhhhhheeeEEEEEEecCC
Confidence 9999999998877775 7899999999999888775
No 5
>COG4894 Uncharacterized conserved protein [Function unknown]
Probab=98.41 E-value=1.1e-06 Score=69.65 Aligned_cols=104 Identities=12% Similarity=0.246 Sum_probs=78.7
Q ss_pred EEeCCCccEEEEEEEeeeeEecCCeEEEcCCCCEEEEEEeeccCccceEEEEcCCCCceEEEEeccccccceEEEEEcC-
Q 044780 16 AVISSHHPIDLAIVRKVMIFSSGNFDVKDTNGNILFKVKNVFAFMRRRRVLLDGAGNPIATIREKAMSRHRRWQVFRGE- 94 (220)
Q Consensus 16 ~vv~~~~~~~l~vk~k~~s~~~~~f~V~D~~G~~vf~V~g~~~s~~~k~~l~D~~G~pL~~i~~k~ls~~~~w~v~~g~- 94 (220)
.+-.+..+..+.|+-+.++. ++.|+|+|+.|.+++.++.+.+++..+..|.|++|+ ++.+++|...++++|++-.-+
T Consensus 22 ~I~d~dgE~af~VeGs~f~i-~dtlti~Da~G~~l~~i~~kll~l~~~yeI~d~~g~-~~~vrKK~tf~Rdk~e~d~~~~ 99 (159)
T COG4894 22 HIYDRDGEEAFKVEGSFFSI-GDTLTITDASGKTLVSIEQKLLSLLPRYEISDGGGT-VCEVRKKVTFSRDKFEIDGLNW 99 (159)
T ss_pred EEECCCCcEEEEEeeeEEee-CceEEEEecCCCChHHHHHHHhhccceeEEEcCCCC-EEEEEEEEEEEeeeEEEcCCCe
Confidence 34444678999999888888 458999999999999999999999999999999999 899999876668888873211
Q ss_pred ---C---------CCCCceEEEEEEccccccccceEEEEEc
Q 044780 95 ---S---------SDPRDLIFSAKISSLWSFKTTKLNVFLA 123 (220)
Q Consensus 95 ---~---------~~~~~~l~tvkk~~~~~~~k~~~~V~~~ 123 (220)
+ .++++..+++.|+ +++. +..|.+.++
T Consensus 100 eihGNi~d~efkl~dg~~~~aeVsKk-wf~~-rdTY~l~va 138 (159)
T COG4894 100 EIHGNIWDDEFKLTDGENVRAEVSKK-WFSW-RDTYHLQVA 138 (159)
T ss_pred EEecceeceEEEEecCCceehhheee-eEec-cceEEEEEc
Confidence 0 1234566666654 3343 666666664
No 6
>PF04525 Tub_2: Tubby C 2; InterPro: IPR007612 This is a family of plant and bacterial uncharacterised proteins.; PDB: 1ZXU_A 2Q4M_A.
Probab=98.09 E-value=3e-05 Score=64.12 Aligned_cols=101 Identities=21% Similarity=0.360 Sum_probs=53.0
Q ss_pred EEeCCCccEEEEEEE-eeeeEecCCeEEEcCCCCEEEEEEeeccCccceEEEEcCCCC----ceEEEEec-cccccceEE
Q 044780 16 AVISSHHPIDLAIVR-KVMIFSSGNFDVKDTNGNILFKVKNVFAFMRRRRVLLDGAGN----PIATIREK-AMSRHRRWQ 89 (220)
Q Consensus 16 ~vv~~~~~~~l~vk~-k~~s~~~~~f~V~D~~G~~vf~V~g~~~s~~~k~~l~D~~G~----pL~~i~~k-~ls~~~~w~ 89 (220)
.|.++.....|+|+. +.+++. +...|+|.+|+++++++-+.+++..+..++++++. +|++|+++ .+..++...
T Consensus 31 ~V~D~~G~~vf~V~g~~~~s~~-~~~~l~D~~G~~L~~i~~k~~~l~~~w~i~~~~~~~~~~~i~tvkk~~~~~~~~~~~ 109 (187)
T PF04525_consen 31 TVYDENGNVVFRVDGGKFFSIG-KKRTLMDASGNPLFTIRRKLFSLRPTWEIYRGGGSEGKKPIFTVKKKSMLQNKDSFD 109 (187)
T ss_dssp EEEETTS-EEEEEE--SCTTBT-TEEEEE-TTS-EEEEEE--------EEEEEETT---GGGEEEEEE----------EE
T ss_pred EEEcCCCCEEEEEEEecccCCC-CEEEEECCCCCEEEEEEeeecccceEEEEEECCCCccCceEEEEEEecccCCCccee
Confidence 344446689999999 788885 59999999999999999999999999999999998 59999999 445555566
Q ss_pred EEEcCCC-----CCCceEEEEEEccccccccceEEEE
Q 044780 90 VFRGESS-----DPRDLIFSAKISSLWSFKTTKLNVF 121 (220)
Q Consensus 90 v~~g~~~-----~~~~~l~tvkk~~~~~~~k~~~~V~ 121 (220)
+|.+... ..+.+-++++-. ++..+++|+
T Consensus 110 ~f~~~~~~~~~~~~~~~~~~i~G~----~~~~~~~I~ 142 (187)
T PF04525_consen 110 VFLPPKSNISIDDSEGPDFEIKGN----FWDRSFTIY 142 (187)
T ss_dssp EEET--T----------SEEEES-----TTTT--EEE
T ss_pred EEEecccceeecCCCCceEEEEEE----ecCcEEEEE
Confidence 6665211 123455666643 225567776
No 7
>PF03803 Scramblase: Scramblase ; InterPro: IPR005552 Scramblase is palmitoylated and contains a potential protein kinase C phosphorylation site. Scramblase exhibits Ca2+-activated phospholipid scrambling activity in vitro. There are also possible SH3 and WW binding motifs. Scramblase is involved in the redistribution of phospholipids after cell activation or injury [].
Probab=96.54 E-value=0.038 Score=46.51 Aligned_cols=65 Identities=18% Similarity=0.311 Sum_probs=50.8
Q ss_pred eEEEcCCCCEEEEEEeeccC------ccceEEEEcCCCCceEEEEeccccccceEEEEEcCCCCCCceEEEEEEc
Q 044780 40 FDVKDTNGNILFKVKNVFAF------MRRRRVLLDGAGNPIATIREKAMSRHRRWQVFRGESSDPRDLIFSAKIS 108 (220)
Q Consensus 40 f~V~D~~G~~vf~V~g~~~s------~~~k~~l~D~~G~pL~~i~~k~ls~~~~w~v~~g~~~~~~~~l~tvkk~ 108 (220)
..|+|.+|+.+++++-...- ...+..+.++.|++|-+|+++.-.+.+.++|++.+ ++++++|+.+
T Consensus 78 ~~i~D~~g~~vl~i~Rp~~c~~C~~~~~~~~~V~~p~g~~iG~I~q~~~~~~~~f~I~d~~----~~~~~~I~gp 148 (221)
T PF03803_consen 78 MHIYDNYGREVLTIERPFKCCSCCPCCLQEMEVESPPGNLIGSIRQPFSCCRPNFDIFDAN----GNPIFTIKGP 148 (221)
T ss_pred EEEEecCCCEEEEEEcCCcceecccccceeEEEecCCCcEEEEEEEcCcccceEEEEEECC----CceEEEEeCC
Confidence 46889999999999865321 23677788999999999998866678889999876 4678888865
No 8
>KOG0621 consensus Phospholipid scramblase [Cell wall/membrane/envelope biogenesis]
Probab=69.36 E-value=16 Score=32.60 Aligned_cols=49 Identities=22% Similarity=0.185 Sum_probs=37.7
Q ss_pred CCeEEEcCCCCEEEEEEeec------cCccceEEEEcCCCCceEEEEeccccccc
Q 044780 38 GNFDVKDTNGNILFKVKNVF------AFMRRRRVLLDGAGNPIATIREKAMSRHR 86 (220)
Q Consensus 38 ~~f~V~D~~G~~vf~V~g~~------~s~~~k~~l~D~~G~pL~~i~~k~ls~~~ 86 (220)
-.|.|.|..++.+|+|+|.. .+......++..+|..+..|-+|...+..
T Consensus 188 ~~f~i~~~~~~~v~~v~gp~~~~~~~~~d~~f~~~~~d~~~~vg~I~k~w~g~~r 242 (292)
T KOG0621|consen 188 PNFHLWDRDGNLVFLVEGPRCCTFACCDDTVFFPKTTDNGRIVGSISRKWAGLVR 242 (292)
T ss_pred ceEEEEcccceeEEEEEcCceeEEEeecCcceeEEEcCCCeEEEEEeecccchhh
Confidence 48999999999999999972 23455677788889999999888654443
No 9
>PF13860 FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A.
Probab=63.05 E-value=18 Score=25.43 Aligned_cols=17 Identities=24% Similarity=0.333 Sum_probs=9.8
Q ss_pred eEEEEcCCCCceEEEEe
Q 044780 63 RRVLLDGAGNPIATIRE 79 (220)
Q Consensus 63 k~~l~D~~G~pL~~i~~ 79 (220)
++.|+|.+|+.|.++.-
T Consensus 28 ~v~I~d~~G~~V~t~~~ 44 (81)
T PF13860_consen 28 TVTIYDSNGQVVRTISL 44 (81)
T ss_dssp EEEEEETTS-EEEEEEE
T ss_pred EEEEEcCCCCEEEEEEc
Confidence 56666666666665543
No 10
>PF09008 Head_binding: Head binding; InterPro: IPR009093 This entry represents the N-terminal domain of the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The tailspike protein of Salmonella bacteriophage P22 is a viral adhesion protein that mediates attachment of the viral protein to host cell-surface lipopolysaccharide. The tailspike protein displays both receptor binding and destroying properties, inactivating the receptor by endoglycosidase activity. The N-terminal, head-binding domain mediates the non-covalent attachment of the six homotrimeric tailspike molecules to the DNA injection apparatus []. The N-terminal domain of the P22 tailspike protein shows significant sequence similarity to the N-terminal domain of the Shigella phage Sf6 tailspike protein [].; GO: 0009405 pathogenesis; PDB: 2XC1_C 1LKT_D 2VFQ_A 2VFO_A 2VFN_A 2VFP_A 2VKY_B 2VFM_A 2VNL_A 2VBK_A ....
Probab=60.27 E-value=15 Score=28.01 Aligned_cols=59 Identities=19% Similarity=0.216 Sum_probs=31.2
Q ss_pred ceEEeCCCc-cEEEEEEEeeeeEecCCeEEEcCCCCEEEEEEeeccCccceEEEEcCCCCceEEEEe
Q 044780 14 PVAVISSHH-PIDLAIVRKVMIFSSGNFDVKDTNGNILFKVKNVFAFMRRRRVLLDGAGNPIATIRE 79 (220)
Q Consensus 14 pv~vv~~~~-~~~l~vk~k~~s~~~~~f~V~D~~G~~vf~V~g~~~s~~~k~~l~D~~G~pL~~i~~ 79 (220)
.|.|.-+.+ -....| ...+.++.++|.+++ |+.+.-|.... +...++|++|..+|.+-.
T Consensus 46 qI~Vyl~ne~G~~~~i-~QPi~iN~gg~~~y~--gq~a~~vt~~~----hSMAv~d~~g~q~Fy~pn 105 (114)
T PF09008_consen 46 QIPVYLENEDGSHVQI-AQPIIINKGGFPVYN--GQIAKFVTVPG----HSMAVYDANGQQQFYFPN 105 (114)
T ss_dssp B--EEEE-TTS-EEEE--SSEEE-TTS-EEET--TEE--EEESSS----EEEEEE-TTS-EEEEESE
T ss_pred cceEEEEcCCCCEeec-cCCEEEccCCceEEc--cceeEEEEccC----ceEEEEeCCCcEEEeecc
Confidence 566665522 223333 344677677999995 55666565543 445899999999998754
No 11
>KOG3950 consensus Gamma/delta sarcoglycan [Cytoskeleton]
Probab=56.18 E-value=12 Score=32.73 Aligned_cols=9 Identities=44% Similarity=0.700 Sum_probs=6.3
Q ss_pred eEEEEEeCC
Q 044780 177 NFMVTVHPN 185 (220)
Q Consensus 177 ty~v~V~pg 185 (220)
.|.|-|-|+
T Consensus 262 v~eiCvC~n 270 (292)
T KOG3950|consen 262 VFEICVCPN 270 (292)
T ss_pred EEEEEEecC
Confidence 777777654
No 12
>PF04790 Sarcoglycan_1: Sarcoglycan complex subunit protein; InterPro: IPR006875 The dystrophin glycoprotein complex (DGC) is a membrane-spanning complex that links the interior cytoskeleton to the extracellular matrix in muscle. The sarcoglycan complex is a subcomplex within the DGC and is composed of several muscle-specific, transmembrane proteins (alpha-, beta-, gamma-, delta- and zeta-sarcoglycan). The sarcoglycans are asparagine-linked glycosylated proteins with single transmembrane domains. This family contains beta, gamma and delta members [, ].; GO: 0007010 cytoskeleton organization, 0016012 sarcoglycan complex, 0016021 integral to membrane
Probab=56.08 E-value=25 Score=30.90 Aligned_cols=18 Identities=17% Similarity=0.209 Sum_probs=8.7
Q ss_pred ceEEEEcC-CCCceEEEEe
Q 044780 62 RRRVLLDG-AGNPIATIRE 79 (220)
Q Consensus 62 ~k~~l~D~-~G~pL~~i~~ 79 (220)
+.+.+.|+ +|++||+..+
T Consensus 118 ~~F~V~d~~~g~~lFsad~ 136 (264)
T PF04790_consen 118 NRFEVKDPRDGKTLFSADR 136 (264)
T ss_pred CeEEEEcCCCCceEEEecC
Confidence 34455555 4555555444
No 13
>PF01167 Tub: Tub family; InterPro: IPR000007 Tubby, an autosomal recessive mutation, mapping to mouse chromosome 7, was recently found to be the result of a splicing defect in a novel gene with unknown function. This mutation maps to the tub gene [, ]. The mouse tubby mutation is the cause of maturity-onset obesity, insulin resistance and sensory deficits. By contrast with the rapid juvenile-onset weight gain seen in diabetes (db) and obese (ob) mice, obesity in tubby mice develops gradually, and strongly resembles the late-onset obesity observed in the human population. Excessive deposition of adipose tissue culminates in a two-fold increase of body weight. Tubby mice also suffer retinal degeneration and neurosensory hearing loss. The tripartite character of the tubby phenotype is highly similar to human obesity syndromes, such as Alstrom and Bardet-Biedl. Although these phenotypes indicate a vital role for tubby proteins, no biochemical function has yet been ascribed to any family member [], although it has been suggested that the phenotypic features of tubby mice may be the result of cellular apoptosis triggered by expression of the mutated tub gene. TUB is the founding-member of the tubby-like proteins, the TULPs. TULPs are found in multicellular organisms from both the plant and animal kingdoms. Ablation of members of this protein family cause disease phenotypes that are indicative of their importance in nervous-system function and development []. Mammalian TUB is a hydrophilic protein of ~500 residues. The N-terminal (IPR005398 from INTERPRO) portion of the protein is conserved neither in length nor sequence, but, in TUB, contains the nuclear localisation signal and may have transcriptional-activation activity. The C-terminal 250 residues are highly conserved. The C-terminal extremity contains a cysteine residue that might play an important role in the normal functioning of these proteins. The crystal structure of the C-terminal core domain from mouse tubby has been determined to 1.9A resolution. This domain is arranged as a 12-stranded, all anti-parallel, closed beta-barrel that surrounds a central alpha helix, (which is at the extreme carboxyl terminus of the protein) that forms most of the hydrophobic core. Structural analyses suggest that TULPs constitute a unique family of bipartite transcription factors [].; PDB: 3C5N_B 2FIM_A 1I7E_A 1C8Z_A 1S31_A.
Probab=51.10 E-value=1e+02 Score=26.58 Aligned_cols=74 Identities=14% Similarity=0.171 Sum_probs=43.8
Q ss_pred CceEEEEecc--c--cccceEEEEEcCCCCCCceEEEEEEccccccccceEEEEEcCC---CCCceeeEEEeecCCcCcC
Q 044780 72 NPIATIREKA--M--SRHRRWQVFRGESSDPRDLIFSAKISSLWSFKTTKLNVFLANN---TREDVCDFRVVEGSSWLFE 144 (220)
Q Consensus 72 ~pL~~i~~k~--l--s~~~~w~v~~g~~~~~~~~l~tvkk~~~~~~~k~~~~V~~~~~---~~~~~~~~~v~~G~~~~~~ 144 (220)
-.-+.|+|.. + .+.+.|..|..+. .++.|..+||... +. ...|.|++... ..+....=+| +. ||+
T Consensus 7 ~vqC~I~R~k~g~~~~lyp~y~l~l~~~--~~kfLLaArK~~~-s~-~s~YiIS~~~~dlsr~s~~yvGKL-rs-Nf~-- 78 (246)
T PF01167_consen 7 PVQCFIRRDKSGLTRGLYPGYYLYLEGE--NGKFLLAARKRKR-SK-TSNYIISLDPDDLSRSSNNYVGKL-RS-NFL-- 78 (246)
T ss_dssp EEEEEEEEESTTCCCT---EEEEEEEST--TSEEEEEEEEECS-SS-SEEEEEESSHHHHCTT---ESEEE-EE--TT--
T ss_pred EEEEEEEEECCCCCcccCcEeEeccccC--CCcEEEeeeeccc-CC-CcceEEecCCCccccCCCceeeee-cc-ccc--
Confidence 3456776543 2 2567888887531 3578888887532 22 56788876432 1233444567 88 999
Q ss_pred CCeeEEEeC
Q 044780 145 PSSCTIYAG 153 (220)
Q Consensus 145 ~~~~~I~~~ 153 (220)
+..|+||+.
T Consensus 79 GT~F~iyD~ 87 (246)
T PF01167_consen 79 GTEFTIYDN 87 (246)
T ss_dssp SSEEEEEES
T ss_pred eeEEEEECC
Confidence 999999997
No 14
>COG4998 Predicted endonuclease (RecB family) [DNA replication, recombination, and repair]
Probab=47.34 E-value=47 Score=27.39 Aligned_cols=37 Identities=16% Similarity=0.158 Sum_probs=29.8
Q ss_pred CCeeEEEeCCCCceeEEEEeeeeceeeecceeeEEEEEeCC-CCH
Q 044780 145 PSSCTIYAGKSSAIVAQMLEKQTVKSIFLGKNNFMVTVHPN-VDY 188 (220)
Q Consensus 145 ~~~~~I~~~~~~~~VAeV~rk~~~~~~~~g~dty~v~V~pg-vD~ 188 (220)
.++|.|+++ |..|+||.--- -.+..+|.|+|..| +|.
T Consensus 22 Arn~~ve~e--gveVgEiDIVA-----ek~GerYavEVKAG~vdi 59 (209)
T COG4998 22 ARNMPVEDE--GVEVGEIDIVA-----EKGGERYAVEVKAGMVDI 59 (209)
T ss_pred eecceeecC--CeEEEEEEEEE-----ecCCcEEEEEEeccccch
Confidence 577889888 89999997553 35789999999998 464
No 15
>TIGR03784 marine_sortase sortase, marine proteobacterial type. Members of this protein family are sortase enzymes, cysteine transpeptidases involved in protein sorting activities. Members of this family tend to be found in proteobacteria, rather than in Gram-positive bacteria where sortases attach proteins to the Gram-positive cell wall or participate in pilin cross-linking. Many species with this sortase appear to contain a signal target sequence, a protein with a Vault protein inter-alpha-trypsin domain (pfam08487) and a von Willebrand factor type A domain (pfam00092), encoded by an adjacent gene. These sortases are designated subfamily 6 according to Comfort and Clubb (2004).
Probab=41.43 E-value=51 Score=26.98 Aligned_cols=34 Identities=6% Similarity=-0.199 Sum_probs=21.3
Q ss_pred CccceEEEEcCCCCc-eEEEEeccccccceEEEEE
Q 044780 59 FMRRRRVLLDGAGNP-IATIREKAMSRHRRWQVFR 92 (220)
Q Consensus 59 s~~~k~~l~D~~G~p-L~~i~~k~ls~~~~w~v~~ 92 (220)
..++++.|.|.+|+. .+.+.....--.+.+.+..
T Consensus 110 ~~GD~I~v~~~~g~~~~Y~V~~~~iV~~~d~~v~~ 144 (174)
T TIGR03784 110 RPGDVIRLQTPDGQWQSYQVTATRVVDESETGLDL 144 (174)
T ss_pred CCCCEEEEEECCCeEEEEEEeEEEEECCccceecc
Confidence 457888888888886 4777765432233344443
No 16
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=40.71 E-value=83 Score=25.48 Aligned_cols=56 Identities=14% Similarity=0.173 Sum_probs=35.0
Q ss_pred CeEEEcCCCCEEEEEEe------eccCccceEEEEcCCCCceEEEEeccc-cccceEEEEEcC
Q 044780 39 NFDVKDTNGNILFKVKN------VFAFMRRRRVLLDGAGNPIATIREKAM-SRHRRWQVFRGE 94 (220)
Q Consensus 39 ~f~V~D~~G~~vf~V~g------~~~s~~~k~~l~D~~G~pL~~i~~k~l-s~~~~w~v~~g~ 94 (220)
=++|+|++|+++-.+.- +.....-...|+|.+|+.|+.=|...- .+...|..+-|+
T Consensus 11 ~~~~~d~~~~~~g~~~~~~~~~~~~~h~~~~v~v~~~~g~iLL~~R~~~~~~~pg~~~~~pGG 73 (180)
T PRK15393 11 WVDIVNENNEVIAQASREQMRAQCLRHRATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGG 73 (180)
T ss_pred EEEEECCCCCEeeEEEHHHHhhCCCceEEEEEEEECCCCeEEEEEeCCCCCCCCCcccccCCC
Confidence 58999999999998732 122334467888999988874332221 123446655444
No 17
>PF02974 Inh: Protease inhibitor Inh; InterPro: IPR021140 This entry represents the metalloprotease inhibitor I38, as well as the outer membrane lipoprotein Omp19. Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This family of proteins represent monomeric serralysin inhibitors of about 125 residues, which interact with specific metalloprotease which are synthesised by serralysin secretors and characterised by being plant, insect and animal pathogens. It is probable that the serralysin inhibitors protect the host from proteolysis during export of the protease. The members of this family belong to MEROPS proteinase inhibitor family I38, clan IK. X-ray crystallography of a complex between the Serratia marcescens protease, SmaPI, and the inhibitor of Erwinia chrysanthemi, Inh, reveals that Inh is folded into an eight-stranded b-barrel with an N-terminal trunk of 10 residues. Residues 1-5 occupy part of the extended active site of the proteinase, thereby preventing access of the substrate. Residues 6-10 form a linker that connects the N-terminal proteinase-binding peptide to the body of the b-barrel. The backbone carbonyl of Ser-1 interacts with the catalytic zinc; the Ser-2 side chain occupies the S1'-binding site and also forms a hydrogen bond to the carboxyl end of the catalytic Glu, whereas Leu-3 occupies the S2' recognition site. Penetration of the trunk region further than 5 residues into the substrate binding cleft appears to be prevented by the b-barrel, which itself interacts with the proteinase near its Met turn (19). Peptide mimetics of the trunk at concentrations up to about 100 mM do not inhibit the protease, demonstrating that the barrel is essential for inhibitory activity [, ]. Structurally and functionally these inhibitors are closely related to the lipocalins, fatty acid-binding proteins, avidins and the enigmatic triabin. Together these five protein families constitute the calycin superfamily []. The proteins are characterised by their high specificity for small hydrophobic molecules and by their ability to form complexes with soluble macromolecules either through intramolecular disulphides or protein-protein interactions []. ; PDB: 1JIW_I 2RN4_A 1SMP_I.
Probab=40.61 E-value=1.4e+02 Score=21.83 Aligned_cols=31 Identities=19% Similarity=0.218 Sum_probs=22.5
Q ss_pred cceEEEEcCCCCceEEEEeccccccceEEEEEcC
Q 044780 61 RRRRVLLDGAGNPIATIREKAMSRHRRWQVFRGE 94 (220)
Q Consensus 61 ~~k~~l~D~~G~pL~~i~~k~ls~~~~w~v~~g~ 94 (220)
++.+.|+|.+|+.|..+.+.. -..|+....+
T Consensus 61 gd~l~L~d~~G~~v~~f~~~~---~g~~~g~~~~ 91 (99)
T PF02974_consen 61 GDGLVLTDADGSVVAFFYRSG---DGRFEGQTPD 91 (99)
T ss_dssp TTEEEEE-TTS-EEEEEEEEC---TTEEEEEECC
T ss_pred CCEEEEECCCCCEEEEEEccC---CeeEEeEcCC
Confidence 478999999999999987763 3467777765
No 18
>PF08269 Cache_2: Cache domain; InterPro: IPR013163 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions []. This entry is composed of the type 2 Cache domain.; PDB: 2QHK_A 4EXO_A.
Probab=37.41 E-value=7.5 Score=27.97 Aligned_cols=37 Identities=22% Similarity=0.134 Sum_probs=19.0
Q ss_pred CeEEEcCCCCEEEEEEeeccCccceEEEEcCCCCceE
Q 044780 39 NFDVKDTNGNILFKVKNVFAFMRRRRVLLDGAGNPIA 75 (220)
Q Consensus 39 ~f~V~D~~G~~vf~V~g~~~s~~~k~~l~D~~G~pL~ 75 (220)
=|-|+|.+|..+..-....+-..+-..+.|++|.+++
T Consensus 58 Y~fi~d~~g~~l~hp~~p~~~G~n~~~~~D~~G~~~i 94 (95)
T PF08269_consen 58 YFFIYDMDGVVLAHPSNPELEGKNLSDLKDPNGKYLI 94 (95)
T ss_dssp --EEE-TTSBEEEESS-GGGTT-B-TT-B-TT--BHH
T ss_pred eEEEEeCCCeEEEcCCCcccCCcccccCCCCCCCEEe
Confidence 4788999998777654333444556678899998875
No 19
>cd06166 Sortase_D_5 Sortase D (SrtD) is a membrane transpeptidase found in gram-positive bacteria that anchors surface proteins to peptidoglycans of the bacterial cell wall envelope. This involves a transpeptidation reaction in which the surface protein substrate is cleaved at the cell wall sorting signal and covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. Class D sortases are further classified into subfamilies 4 and 5. This group contains a subset of Class D sortases belonging to subfamily-5, represented by Clostridium perfringens CPE2315. Subfamily-5 sortases recognize a nonstandard sorting signal (LAXTG) and have replaced Sortase A in some gram-postive bacteria. They may play a housekeeping role in the cell.
Probab=36.22 E-value=67 Score=24.45 Aligned_cols=17 Identities=12% Similarity=-0.039 Sum_probs=7.8
Q ss_pred cceEEEEcCCCCceEEE
Q 044780 61 RRRRVLLDGAGNPIATI 77 (220)
Q Consensus 61 ~~k~~l~D~~G~pL~~i 77 (220)
++++.|.|..+.-.+++
T Consensus 68 Gd~v~v~~~~~~~~Y~V 84 (126)
T cd06166 68 GDEIKVTTKNGTYKYKI 84 (126)
T ss_pred CCEEEEEECCEEEEEEE
Confidence 44555555444444444
No 20
>cd05828 Sortase_D_4 Sortase D (SrtD) is a membrane transpeptidase found in gram-positive bacteria that anchors surface proteins to peptidoglycans of the bacterial cell wall envelope. This involves a transpeptidation reaction in which the surface protein substrate is cleaved at the cell wall sorting signal and covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. Class D sortases are further classified into subfamilies 4 and 5. This group contains a subset of Class D sortases belonging to subfamily-4. These sortases recognize a unique sorting signal (LPXTA) and they constitute a specialized sorting pathway found in bacilli. Their substrates are predicted to be predominantly enzymes such as 5'-nucleotidases, glycosyl hydrolase, and subtilase.
Probab=35.46 E-value=66 Score=24.53 Aligned_cols=33 Identities=9% Similarity=-0.049 Sum_probs=17.3
Q ss_pred ccceEEEEcCCCCceEEEEeccccccceEEEEE
Q 044780 60 MRRRRVLLDGAGNPIATIREKAMSRHRRWQVFR 92 (220)
Q Consensus 60 ~~~k~~l~D~~G~pL~~i~~k~ls~~~~w~v~~ 92 (220)
.++++.|.+..+.-.+.+.++..--...++++.
T Consensus 64 ~Gd~i~v~~~~~~~~Y~V~~~~~v~~~~~~~~~ 96 (127)
T cd05828 64 PGDIITLQTLGGTYTYRVTSTRIVDADDTSVLA 96 (127)
T ss_pred CCCEEEEEECCEEEEEEEeeEEEECccccEEcc
Confidence 455666666655555555554333334455554
No 21
>PF15529 Toxin_49: Putative toxin 49
Probab=35.31 E-value=39 Score=24.84 Aligned_cols=19 Identities=16% Similarity=0.356 Sum_probs=14.7
Q ss_pred CCeEEEcCCCCEEEEEEee
Q 044780 38 GNFDVKDTNGNILFKVKNV 56 (220)
Q Consensus 38 ~~f~V~D~~G~~vf~V~g~ 56 (220)
.+|+++|++|.++-++++.
T Consensus 30 t~Y~tY~~~G~~~kr~r~~ 48 (89)
T PF15529_consen 30 TSYTTYDEDGMIVKRYRGS 48 (89)
T ss_pred cceeEEcCCCcEeEEeecc
Confidence 4999999999966555553
No 22
>PF06903 VirK: VirK protein; InterPro: IPR010694 This family consists of several bacterial VirK proteins of around 145 residues in length. The function of this family is unknown [].
Probab=34.60 E-value=1.6e+02 Score=22.10 Aligned_cols=40 Identities=15% Similarity=0.174 Sum_probs=25.3
Q ss_pred EEeCCCccEEEEEE-EeeeeEecCCeEEEcCCCCEEEEEEee
Q 044780 16 AVISSHHPIDLAIV-RKVMIFSSGNFDVKDTNGNILFKVKNV 56 (220)
Q Consensus 16 ~vv~~~~~~~l~vk-~k~~s~~~~~f~V~D~~G~~vf~V~g~ 56 (220)
.+++.-.+-.|.|. ...++|++.+|+|-+. |++++..--|
T Consensus 39 ~t~Gg~~i~ayrI~~D~tlaFSd~HfTv~~~-g~Pi~qf~rY 79 (100)
T PF06903_consen 39 KTRGGLRIDAYRITPDGTLAFSDTHFTVDND-GKPIQQFIRY 79 (100)
T ss_pred ccCcccceeeEEEeCCCeEEEecceEEECCC-CCceEeEEEE
Confidence 34454334445554 4477888888888765 7777776554
No 23
>PF07680 DoxA: TQO small subunit DoxA; InterPro: IPR011636 Thiosulphate:quinone oxidoreductase (TQO) catalyses one of the early steps in elemental sulphur oxidation. A novel TQO enzyme was purified from the thermo-acidophilic archaeon Acidianus ambivalens and shown to consist of a large subunit (DoxD) and a smaller subunit (DoxA). The DoxD- and DoxA-like two subunits are fused together in a single polypeptide in Q8AAF0 from SWISSPROT.
Probab=34.32 E-value=38 Score=26.74 Aligned_cols=36 Identities=14% Similarity=0.135 Sum_probs=25.8
Q ss_pred EEEEeecc--CccceEEEEcCCCCceEEEEeccccccc
Q 044780 51 FKVKNVFA--FMRRRRVLLDGAGNPIATIREKAMSRHR 86 (220)
Q Consensus 51 f~V~g~~~--s~~~k~~l~D~~G~pL~~i~~k~ls~~~ 86 (220)
||++|... ++--...|+|.+|+.+++...+.++-.|
T Consensus 36 yr~~G~D~Ygsfl~~i~l~d~~g~vv~~~~~~~L~~lP 73 (133)
T PF07680_consen 36 YRVEGPDVYGSFLIGIQLKDSTGHVVLNWDQEKLSSLP 73 (133)
T ss_pred EEcCCCccCCceeeEEEEECCCCCEEEEeCHHHhhhCC
Confidence 44455433 4556889999999999999887765444
No 24
>TIGR02743 TraW type-F conjugative transfer system protein TraW. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=33.80 E-value=59 Score=27.41 Aligned_cols=29 Identities=21% Similarity=0.297 Sum_probs=18.6
Q ss_pred CccEEEEEEEeeeeEecCCeEEEcCCCCEEEEE
Q 044780 21 HHPIDLAIVRKVMIFSSGNFDVKDTNGNILFKV 53 (220)
Q Consensus 21 ~~~~~l~vk~k~~s~~~~~f~V~D~~G~~vf~V 53 (220)
.+..++++-.- +.+ ..+|+|.+|+++|+-
T Consensus 81 ~~~~t~~~DPs-~tl---~~DI~d~~G~vi~~k 109 (202)
T TIGR02743 81 ETPKTWYFDPS-ITL---AQDILDEKGQVLAKK 109 (202)
T ss_pred ccCceEEeCCc-EEe---cCcccCCCCCEEECC
Confidence 45555555322 344 458999999999863
No 25
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=32.86 E-value=1e+02 Score=24.26 Aligned_cols=52 Identities=13% Similarity=0.125 Sum_probs=36.6
Q ss_pred eEEEcCCCCEEEEEEeeccCc-------cceEEEEcCCCCceEEEEec-cccccceEEEE
Q 044780 40 FDVKDTNGNILFKVKNVFAFM-------RRRRVLLDGAGNPIATIREK-AMSRHRRWQVF 91 (220)
Q Consensus 40 f~V~D~~G~~vf~V~g~~~s~-------~~k~~l~D~~G~pL~~i~~k-~ls~~~~w~v~ 91 (220)
+.|+|++|+++-++.-..... .-...|+|.+|+.|+.-|.. ...+...|.+-
T Consensus 1 ~~~~d~~~~~~g~~~r~~~~~~~g~~h~~v~v~v~~~~g~vLl~kR~~~k~~~PG~W~~~ 60 (158)
T TIGR02150 1 VILVDENDNPIGTASKAEVHLQETPLHRAFSVFLFNEEGQLLLQRRALSKITWPGVWTNS 60 (158)
T ss_pred CEEECCCCCEeeeeeHHHhhhcCCCeEEEEEEEEEcCCCeEEEEeccCCCcCCCCCcccc
Confidence 468999999999987755432 22477899999988864443 23556778864
No 26
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe
Probab=32.26 E-value=1.8e+02 Score=23.28 Aligned_cols=60 Identities=10% Similarity=0.032 Sum_probs=35.6
Q ss_pred EecCCeEEEcCCCCEEEEEEeeccC----ccceEE----EEcCC--CCceEEEEecc-ccccceEEEEEcC
Q 044780 35 FSSGNFDVKDTNGNILFKVKNVFAF----MRRRRV----LLDGA--GNPIATIREKA-MSRHRRWQVFRGE 94 (220)
Q Consensus 35 ~~~~~f~V~D~~G~~vf~V~g~~~s----~~~k~~----l~D~~--G~pL~~i~~k~-ls~~~~w~v~~g~ 94 (220)
|.++-|+|+|++|+++.+++-.... .++-.. +.|.+ |+.+++-|-+. .++...|...-++
T Consensus 2 ~~~E~~~v~d~~~~~~~~~~r~~~~~~g~~h~~v~~~~~~~~~~~~~~l~lqrRs~~K~~~Pg~wd~~~~G 72 (180)
T cd03676 2 WRNELYAVYGPFGEPLFEIERAASRLFGLVTYGVHLNGYVRDEDGGLRIWIPRRSPTKATWPGMLDNLVAG 72 (180)
T ss_pred CcCcceeeECCCCCEeEEEEecccccCCceEEEEEEEEEEEcCCCCeEEEEEeccCCCCCCCCceeeeccc
Confidence 5567899999999999887654321 123333 34665 55555544332 2456678666543
No 27
>PF11191 DUF2782: Protein of unknown function (DUF2782); InterPro: IPR021357 This is a bacterial family of proteins whose function is unknown.
Probab=32.24 E-value=2.1e+02 Score=21.16 Aligned_cols=44 Identities=20% Similarity=0.346 Sum_probs=25.3
Q ss_pred CCCEEE-EEEeeccCccceEEEEcCCCCceEEEEec---cccccceEEEEE
Q 044780 46 NGNILF-KVKNVFAFMRRRRVLLDGAGNPIATIREK---AMSRHRRWQVFR 92 (220)
Q Consensus 46 ~G~~vf-~V~g~~~s~~~k~~l~D~~G~pL~~i~~k---~ls~~~~w~v~~ 92 (220)
+|++-. +|.-+ .+.--.|+|.+|.--+.=+.. .-...+.|.||.
T Consensus 57 ~G~l~~IkV~P~---~G~~Yyl~d~dg~g~~~~~~~~~~~~~~~p~W~i~~ 104 (105)
T PF11191_consen 57 NGQLYMIKVQPK---AGPPYYLVDPDGDGNFSRSDANSDSDVSPPQWVIFS 104 (105)
T ss_pred CCeEeeEEEEeC---CCCCEEEECCCCCCcccccccccCCCCCCcEEEEee
Confidence 555544 45543 236778888888755554443 122356777763
No 28
>PRK13738 conjugal transfer pilus assembly protein TraW; Provisional
Probab=30.60 E-value=73 Score=27.04 Aligned_cols=29 Identities=10% Similarity=0.173 Sum_probs=18.7
Q ss_pred CccEEEEEEEeeeeEecCCeEEEcCCCCEEEEE
Q 044780 21 HHPIDLAIVRKVMIFSSGNFDVKDTNGNILFKV 53 (220)
Q Consensus 21 ~~~~~l~vk~k~~s~~~~~f~V~D~~G~~vf~V 53 (220)
.+..++++-. .+.+ ..+|+|.+|+++|+-
T Consensus 79 ~~~rt~~~DP-s~tl---~~DI~d~~G~vi~~~ 107 (209)
T PRK13738 79 EKYRSRLFDP-SVRL---AADIRDNEGRVFARQ 107 (209)
T ss_pred ccCceEEeCC-cEEe---cCccCCCCCCEEEcC
Confidence 4555555532 2344 458999999999863
No 29
>PRK06655 flgD flagellar basal body rod modification protein; Reviewed
Probab=30.48 E-value=73 Score=27.21 Aligned_cols=42 Identities=24% Similarity=0.165 Sum_probs=22.7
Q ss_pred cCCeEEEcCCCCEEEEEEeeccCccceEEEEcCCCCceEEEEe
Q 044780 37 SGNFDVKDTNGNILFKVKNVFAFMRRRRVLLDGAGNPIATIRE 79 (220)
Q Consensus 37 ~~~f~V~D~~G~~vf~V~g~~~s~~~k~~l~D~~G~pL~~i~~ 79 (220)
++.+.+.+ .+..-|+++=..-.-.-++.|+|++|+.+.++.-
T Consensus 104 ~~~~~~~~-~~~~~~~~~l~~~a~~vti~I~D~~G~~Vrt~~l 145 (225)
T PRK06655 104 GDTVLVGT-GGTTPFGVELPSAADNVTVTITDSAGQVVRTIDL 145 (225)
T ss_pred cceEEecC-CCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEec
Confidence 44444433 2345555542222223567888888888877643
No 30
>PRK10523 lipoprotein involved with copper homeostasis and adhesion; Provisional
Probab=29.23 E-value=1.1e+02 Score=26.58 Aligned_cols=53 Identities=15% Similarity=0.192 Sum_probs=31.4
Q ss_pred ccEEEEEEEeeeeEecCCeEEEcC-----CCCEEEEEEeeccCccceEEEEcCCCCc-eEEEEec
Q 044780 22 HPIDLAIVRKVMIFSSGNFDVKDT-----NGNILFKVKNVFAFMRRRRVLLDGAGNP-IATIREK 80 (220)
Q Consensus 22 ~~~~l~vk~k~~s~~~~~f~V~D~-----~G~~vf~V~g~~~s~~~k~~l~D~~G~p-L~~i~~k 80 (220)
..++|++. .++.|..... +++..|+-.|+.-...++++|.|.+|.. .|.+...
T Consensus 57 I~ttLtL~------~DgTY~L~~~Ylg~k~~~~~f~~~G~w~~~~~~i~L~~~~g~~~yF~v~e~ 115 (234)
T PRK10523 57 IETSLFLE------KDGTWVMNERYLGAREEPSSFASYGTWARTADKLVLTDSKGEKSYYRAKGD 115 (234)
T ss_pred ceEEEEEc------CCCCEEEEEEEcCCCCCCCceEeeEEEEecCCEEEEecCCCCEeEEEECCC
Confidence 46777774 2345555442 2456777777654445677777877775 4444443
No 31
>PRK10523 lipoprotein involved with copper homeostasis and adhesion; Provisional
Probab=29.08 E-value=2.2e+02 Score=24.60 Aligned_cols=35 Identities=26% Similarity=0.503 Sum_probs=23.8
Q ss_pred EecCCeEEEcCCCCE-EEEEEeeccCccceEEEEcCCCCceE
Q 044780 35 FSSGNFDVKDTNGNI-LFKVKNVFAFMRRRRVLLDGAGNPIA 75 (220)
Q Consensus 35 ~~~~~f~V~D~~G~~-vf~V~g~~~s~~~k~~l~D~~G~pL~ 75 (220)
..++.++.+|++|+. .|+|.+ +.+.++|.+|+++-
T Consensus 93 ~~~~~i~L~~~~g~~~yF~v~e------~~L~mLD~~G~~i~ 128 (234)
T PRK10523 93 RTADKLVLTDSKGEKSYYRAKG------DALEMLDREGNPIE 128 (234)
T ss_pred ecCCEEEEecCCCCEeEEEECC------CEEEEecCCCCccc
Confidence 344555566766654 666654 45799999999883
No 32
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=28.83 E-value=42 Score=23.91 Aligned_cols=15 Identities=33% Similarity=0.640 Sum_probs=9.7
Q ss_pred CeEEEcCCCCEEEEE
Q 044780 39 NFDVKDTNGNILFKV 53 (220)
Q Consensus 39 ~f~V~D~~G~~vf~V 53 (220)
||.|+|.+|+.||+=
T Consensus 27 D~~v~d~~g~~vwrw 41 (82)
T PF12690_consen 27 DFVVKDKEGKEVWRW 41 (82)
T ss_dssp EEEEE-TT--EEEET
T ss_pred EEEEECCCCCEEEEe
Confidence 788888899988874
No 33
>PF11589 DUF3244: Domain of unknown function (DUF3244); InterPro: IPR021638 This family of proteins with unknown function appear to be restricted to Bacteroidetes. The protein may have an immunoglobulin-like beta-sandwich fold however this cannot be confirmed. ; PDB: 3D33_B 3SD2_A.
Probab=28.74 E-value=71 Score=23.59 Aligned_cols=16 Identities=25% Similarity=0.692 Sum_probs=7.4
Q ss_pred CeEEEcCCCCEEEEEE
Q 044780 39 NFDVKDTNGNILFKVK 54 (220)
Q Consensus 39 ~f~V~D~~G~~vf~V~ 54 (220)
..+|+|++|+++|.=.
T Consensus 51 tI~I~d~~G~vVy~~~ 66 (106)
T PF11589_consen 51 TITIKDSTGNVVYSET 66 (106)
T ss_dssp EEEEEETT--EEEEEE
T ss_pred EEEEEeCCCCEEEEEE
Confidence 3455555555555543
No 34
>smart00634 BID_1 Bacterial Ig-like domain (group 1).
Probab=28.47 E-value=1.4e+02 Score=21.20 Aligned_cols=11 Identities=45% Similarity=0.875 Sum_probs=5.3
Q ss_pred EEEcCCCCceE
Q 044780 65 VLLDGAGNPIA 75 (220)
Q Consensus 65 ~l~D~~G~pL~ 75 (220)
.+.|.+|+|+-
T Consensus 25 ~v~D~~Gnpv~ 35 (92)
T smart00634 25 TVTDANGNPVA 35 (92)
T ss_pred EEECCCCCCcC
Confidence 44555555443
No 35
>PRK12816 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=27.26 E-value=64 Score=28.16 Aligned_cols=36 Identities=11% Similarity=0.204 Sum_probs=28.2
Q ss_pred eEEEcCCCCEEEEEEeeccCccceEEEEcCCCCceEE
Q 044780 40 FDVKDTNGNILFKVKNVFAFMRRRRVLLDGAGNPIAT 76 (220)
Q Consensus 40 f~V~D~~G~~vf~V~g~~~s~~~k~~l~D~~G~pL~~ 76 (220)
|.|.+.+|+.+|+=+|. |++...-.|.+++|.+|+.
T Consensus 103 F~V~~~~G~~~YTR~G~-F~~d~~G~Lvt~~G~~vl~ 138 (264)
T PRK12816 103 FKILMPDGTYAYTRDGS-FKIDANGQLVTSNGYRLLP 138 (264)
T ss_pred EEEEcCCCCeEEeeCCC-eeECCCCCEECCCCCEecc
Confidence 57777889888997776 4555666799999999985
No 36
>TIGR03406 FeS_long_SufT probable FeS assembly SUF system protein SufT. The function is unknown for this protein family, but members are found almost always in operons for the the SUF system of iron-sulfur cluster biosynthesis. The SUF system is present elsewhere on the chromosome for those few species where SUF genes are not adjacent. This family shares this property of association with the SUF system with a related family, TIGR02945. TIGR02945 consists largely of a DUF59 domain (see Pfam family pfam01883), while this protein is about double the length, with a unique N-terminal domain and DUF59 C-terminal domain. A location immediately downstream of the cysteine desulfurase gene sufS in many contexts suggests the gene symbol sufT. Note that some other homologs of this family and of TIGR02945, but no actual members of this family, are found in operons associated with phenylacetic acid (or other ring-hydroxylating) degradation pathways.
Probab=27.26 E-value=1.1e+02 Score=25.23 Aligned_cols=30 Identities=27% Similarity=0.490 Sum_probs=22.0
Q ss_pred cEEEEEEEeeeeEecCCeEEEcCCCCEEEEEEeecc
Q 044780 23 PIDLAIVRKVMIFSSGNFDVKDTNGNILFKVKNVFA 58 (220)
Q Consensus 23 ~~~l~vk~k~~s~~~~~f~V~D~~G~~vf~V~g~~~ 58 (220)
-+..+|.|-+ +++|||+ .+|| +||++|+..
T Consensus 23 ~~~~~~~q~l----gg~~t~~-~~g~-~~r~~~~~~ 52 (174)
T TIGR03406 23 GTEVTITQAL----GGNFTVV-VEGN-MARIDGKDA 52 (174)
T ss_pred CCEEEEEEcc----CCeEEEE-EcCe-EEEecCcCh
Confidence 3455666654 7899996 5687 899999864
No 37
>PF04170 NlpE: NlpE N-terminal domain; InterPro: IPR007298 This family represents a bacterial outer membrane lipoprotein that is necessary for signalling by the Cpx pathway []. This pathway responds to cell envelope disturbances and increases the expression of periplasmic protein folding and degradation factors. While the molecular function of the NlpE protein is unknown, it may be involved in detecting bacterial adhesion to abiotic surfaces. NlpE from Escherichia coli and Salmonella typhi is also known to confer copper tolerance in copper-sensitive strains of E. coli, and may be involved in copper efflux and delivery of copper to copper-dependent enzymes [].; PDB: 3LHN_A 2Z4I_B 2Z4H_A.
Probab=25.86 E-value=1.5e+02 Score=21.12 Aligned_cols=12 Identities=25% Similarity=0.302 Sum_probs=5.3
Q ss_pred cceEEEEcCCCC
Q 044780 61 RRRRVLLDGAGN 72 (220)
Q Consensus 61 ~~k~~l~D~~G~ 72 (220)
...+.|.+.+|.
T Consensus 51 ~~~i~L~~~~~~ 62 (87)
T PF04170_consen 51 GNIITLTDNNGD 62 (87)
T ss_dssp SSEEEEEETTTT
T ss_pred CCEEEEecCCCC
Confidence 344444444433
No 38
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=25.83 E-value=1.3e+02 Score=23.29 Aligned_cols=31 Identities=26% Similarity=0.349 Sum_probs=24.5
Q ss_pred CCCEEEEEEeeccCc--------cceEEEEcCCCCceEE
Q 044780 46 NGNILFKVKNVFAFM--------RRRRVLLDGAGNPIAT 76 (220)
Q Consensus 46 ~G~~vf~V~g~~~s~--------~~k~~l~D~~G~pL~~ 76 (220)
+|..+|+|+|..... .=++.|+|.+|++|++
T Consensus 65 ~~~~~l~v~g~i~N~~~~~~~~P~l~l~L~D~~g~~l~~ 103 (149)
T PF11906_consen 65 DGPGVLVVSGTIRNRADFPQALPALELSLLDAQGQPLAR 103 (149)
T ss_pred CCCCEEEEEEEEEeCCCCcccCceEEEEEECCCCCEEEE
Confidence 688999999976432 2379999999999974
No 39
>PRK12813 flgD flagellar basal body rod modification protein; Reviewed
Probab=25.72 E-value=79 Score=27.06 Aligned_cols=16 Identities=31% Similarity=0.356 Sum_probs=10.1
Q ss_pred eEEEEcCCCCceEEEE
Q 044780 63 RRVLLDGAGNPIATIR 78 (220)
Q Consensus 63 k~~l~D~~G~pL~~i~ 78 (220)
.+.|+|.+|+.+-++.
T Consensus 127 ~v~I~D~~G~vV~t~~ 142 (223)
T PRK12813 127 ELVVRDAAGAEVARET 142 (223)
T ss_pred EEEEEcCCCCEEEEEe
Confidence 5666666666665553
No 40
>PLN02552 isopentenyl-diphosphate delta-isomerase
Probab=23.97 E-value=2.1e+02 Score=24.78 Aligned_cols=57 Identities=11% Similarity=0.017 Sum_probs=40.1
Q ss_pred cCCeEEEcCCCCEEEEEEeecc------------CccceEEEEcCCCCceEEEEec-cccccceEEEEEc
Q 044780 37 SGNFDVKDTNGNILFKVKNVFA------------FMRRRRVLLDGAGNPIATIREK-AMSRHRRWQVFRG 93 (220)
Q Consensus 37 ~~~f~V~D~~G~~vf~V~g~~~------------s~~~k~~l~D~~G~pL~~i~~k-~ls~~~~w~v~~g 93 (220)
.+.+.|+|++++++-++.-+.. ...-...|+|.+|+.|++-|.. ...+...|.+-.+
T Consensus 22 ~e~v~lvDe~d~~~G~~~r~~~H~~~~~~~~gl~Hra~~v~i~n~~g~lLLQkRs~~K~~~Pg~Wd~s~~ 91 (247)
T PLN02552 22 EDECILVDENDNVVGHDSKYNCHLFEKIEPRGLLHRAFSVFLFNSKYELLLQQRAATKVTFPLVWTNTCC 91 (247)
T ss_pred cCeEEEEcCCCCEEeeeEHhhhhccccccCCCceEEEEEEEEEcCCCeEEEEEecCCCCCCCcceecccC
Confidence 3689999999999988864321 1223577899999999988764 3345667876543
No 41
>PF09475 Dot_icm_IcmQ: Dot/Icm secretion system protein (dot_icm_IcmQ); InterPro: IPR013365 Proteins in this entry are the IcmQ component of Dot/Icm secretion systems, as found in the obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the literature now seems to favor calling this the Dot/Icm system. This protein was shown to be essential for translocation ().; PDB: 3FXE_A 3FXD_C.
Probab=23.12 E-value=27 Score=28.69 Aligned_cols=30 Identities=17% Similarity=0.380 Sum_probs=0.0
Q ss_pred eccCccceEEEEcCCCCceEEEEecccccc
Q 044780 56 VFAFMRRRRVLLDGAGNPIATIREKAMSRH 85 (220)
Q Consensus 56 ~~~s~~~k~~l~D~~G~pL~~i~~k~ls~~ 85 (220)
..++++..+..+|--|+||++++.|.+.+.
T Consensus 128 dIl~~~~dk~~~Dk~GkpLltLkdrai~le 157 (179)
T PF09475_consen 128 DILSLSPDKIPTDKLGKPLLTLKDRAINLE 157 (179)
T ss_dssp ------------------------------
T ss_pred hcccCCcccccccccCCcccccchhhcchh
Confidence 345678888999999999999999987653
No 42
>PRK12691 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=22.93 E-value=1.1e+02 Score=26.53 Aligned_cols=36 Identities=11% Similarity=0.276 Sum_probs=27.7
Q ss_pred eEEEcCCCCEEEEEEeeccCccceEEEEcCCCCceEE
Q 044780 40 FDVKDTNGNILFKVKNVFAFMRRRRVLLDGAGNPIAT 76 (220)
Q Consensus 40 f~V~D~~G~~vf~V~g~~~s~~~k~~l~D~~G~pL~~ 76 (220)
|.|.+.+|+..|+=+|. |.+...-.|.+++|.+|+.
T Consensus 103 F~V~~~~G~~~yTR~G~-F~~d~~G~Lvt~~G~~vl~ 138 (262)
T PRK12691 103 FQIQLPDGETAYTRAGA-FNRSADGQIVTSDGYPVQP 138 (262)
T ss_pred EEEEcCCCCEEEeeCCC-eeECCCCCEECCCCCEeEe
Confidence 57777789888997776 4455566799999999985
No 43
>PF00845 Gemini_BL1: Geminivirus BL1 movement protein; InterPro: IPR000211 The movement of bipartite Geminiviruses such as squash leaf curl virus (SqLCV) requires the cooperative interaction of two essential virus-encoded movement proteins, BR1 and BL1. Recent studies of SqLCV and bean dwarf mosaic virus have shown that BR1 and BL1 act in a cooperative manner to move the viral genome intracellularly from the nucleus to the cytoplasm and across the wall cell to cell. BR1 is a nuclear shuttle protein, and it has been proposed to bind newly replicated viral ssDNA genomes and move these between the nucleus and cytoplasm. These BR1-genome complexes are then directed to the cell periphery through interactions between BR1 and BL1, where, as the result of BL1 action, the complexes are moved to adjacent uninfected cells. The precise mechanism by which BL1 acts to transport these genome complexes across the cell wall, and whether this may differ in different cell types, remains at issue [].; GO: 0003677 DNA binding, 0046740 spread of virus in host, cell to cell, 0033644 host cell membrane
Probab=22.66 E-value=2.5e+02 Score=24.62 Aligned_cols=15 Identities=27% Similarity=0.572 Sum_probs=9.7
Q ss_pred EcCCCCceEEEEecc
Q 044780 67 LDGAGNPIATIREKA 81 (220)
Q Consensus 67 ~D~~G~pL~~i~~k~ 81 (220)
.++.|.++.+||.+.
T Consensus 54 iNAtGsVIVEIhD~R 68 (276)
T PF00845_consen 54 INATGSVIVEIHDKR 68 (276)
T ss_pred ccCceeEEEEEeccc
Confidence 456666777776665
No 44
>PF00384 Molybdopterin: Molybdopterin oxidoreductase; InterPro: IPR006656 This domain is found in a number of molybdopterin-containing oxidoreductases, tungsten formylmethanofuran dehydrogenase subunit d (FwdD) and molybdenum formylmethanofuran dehydrogenase subunit (FmdD); where a single domain constitutes almost the entire subunit. The formylmethanofuran dehydrogenase catalyses the first step in methane formation from CO2 in methanogenic archaea and has a molybdopterin dinucleotide cofactor []. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1TI2_G 1VLE_M 1VLD_U 1VLF_O 1TI4_I 1TI6_E 3DMR_A 4DMR_A 1H5N_C 1E5V_A ....
Probab=22.32 E-value=84 Score=28.42 Aligned_cols=31 Identities=29% Similarity=0.397 Sum_probs=23.6
Q ss_pred ceeeEEEEEeCCCCHHHHHHHH-HHhhhhhhc
Q 044780 174 GKNNFMVTVHPNVDYAFIVALI-VILDEINRA 204 (220)
Q Consensus 174 g~dty~v~V~pgvD~ali~alv-i~lD~~~~~ 204 (220)
....+.|.|.||-|.+|++|++ +++++...+
T Consensus 156 ~~ad~~i~i~PGtD~al~~a~~~~ii~~~~~d 187 (432)
T PF00384_consen 156 AKADEWIPIRPGTDAALALAMAHVIIDEGLYD 187 (432)
T ss_dssp GGTSEEEEE-TTTHHHHHHHHHHHHHHTTTST
T ss_pred hhccccccccccccHHhhcccccceeeccccc
Confidence 3567889999999999999987 667665543
No 45
>COG5436 Predicted integral membrane protein [Function unknown]
Probab=22.03 E-value=4.1e+02 Score=21.75 Aligned_cols=34 Identities=18% Similarity=0.321 Sum_probs=19.0
Q ss_pred CCCEEEEEEeeccCccceEEEEcCCCCceEEEEecc
Q 044780 46 NGNILFKVKNVFAFMRRRRVLLDGAGNPIATIREKA 81 (220)
Q Consensus 46 ~G~~vf~V~g~~~s~~~k~~l~D~~G~pL~~i~~k~ 81 (220)
+|-+.++-+|..- -+.+.++|++|+.+|+|..+.
T Consensus 77 egpvri~a~~nvp--yWSvsiyds~~nn~fS~ND~t 110 (182)
T COG5436 77 EGPVRIEAKGNVP--YWSVSIYDSNGNNFFSINDRT 110 (182)
T ss_pred CCcEEEEecCCCc--eEEEEEEcCCCCceEEecccc
Confidence 4555444444211 134567777777777776553
No 46
>PRK12640 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=21.80 E-value=88 Score=27.03 Aligned_cols=37 Identities=14% Similarity=0.188 Sum_probs=27.2
Q ss_pred CeEEEcCCCCEEEEEEeeccCccceEEEEcCCCCceEE
Q 044780 39 NFDVKDTNGNILFKVKNVFAFMRRRRVLLDGAGNPIAT 76 (220)
Q Consensus 39 ~f~V~D~~G~~vf~V~g~~~s~~~k~~l~D~~G~pL~~ 76 (220)
=|.|.+.+|+..|+=+|. |.+-..-.|.+.+|.+|+.
T Consensus 87 FF~V~~~~G~~~yTR~G~-F~~d~~G~Lvt~~G~~vlg 123 (246)
T PRK12640 87 WLAVQAPDGSEAYTRNGS-LQVDANGQLRTANGLPVLG 123 (246)
T ss_pred EEEEEcCCCCEEEEeCCC-eeECCCCCEEcCCCCCccC
Confidence 367777788888987776 4455566688888988884
No 47
>PF13511 DUF4124: Domain of unknown function (DUF4124)
Probab=21.53 E-value=75 Score=20.64 Aligned_cols=19 Identities=16% Similarity=0.263 Sum_probs=13.8
Q ss_pred cCCeEEEcCCCCEEEEEEe
Q 044780 37 SGNFDVKDTNGNILFKVKN 55 (220)
Q Consensus 37 ~~~f~V~D~~G~~vf~V~g 55 (220)
.+=|.=+|++|++.|+=.-
T Consensus 13 a~vYk~~D~~G~v~ysd~P 31 (60)
T PF13511_consen 13 AEVYKWVDENGVVHYSDTP 31 (60)
T ss_pred ccEEEEECCCCCEEECccC
Confidence 3457777889999887553
No 48
>PRK00122 rimM 16S rRNA-processing protein RimM; Provisional
Probab=21.35 E-value=2.5e+02 Score=22.59 Aligned_cols=10 Identities=20% Similarity=0.571 Sum_probs=3.8
Q ss_pred cCCCCceEEE
Q 044780 68 DGAGNPIATI 77 (220)
Q Consensus 68 D~~G~pL~~i 77 (220)
|.+|+.|-+|
T Consensus 112 d~~g~~lG~V 121 (172)
T PRK00122 112 DEDGEELGKV 121 (172)
T ss_pred eCCCcEEEEE
Confidence 3333333333
No 49
>TIGR02488 flgG_G_neg flagellar basal-body rod protein FlgG, Gram-negative bacteria. This family consists of the FlgG protein of the flagellar apparatus in the Proteobacteria and spirochetes.
Probab=21.21 E-value=91 Score=26.97 Aligned_cols=36 Identities=17% Similarity=0.315 Sum_probs=27.2
Q ss_pred eEEEcCCCCEEEEEEeeccCccceEEEEcCCCCceEE
Q 044780 40 FDVKDTNGNILFKVKNVFAFMRRRRVLLDGAGNPIAT 76 (220)
Q Consensus 40 f~V~D~~G~~vf~V~g~~~s~~~k~~l~D~~G~pL~~ 76 (220)
|.|.+.+|+.+|+=+|. |.+...-.|.+.+|.+|+.
T Consensus 101 F~V~~~~g~~~yTR~G~-F~~d~~G~Lvt~~G~~Vl~ 136 (259)
T TIGR02488 101 FQVLMPDGTTAYTRDGA-FKINAEGQLVTSNGYPLQP 136 (259)
T ss_pred EEEEcCCCCeEEeeCCc-eEECCCCCEECCCCCEecC
Confidence 57777788888887775 4555566789999999884
No 50
>PF12119 DUF3581: Protein of unknown function (DUF3581); InterPro: IPR021974 This family consists of uncharacterised bacterial proteins.
Probab=21.07 E-value=5.3e+02 Score=22.05 Aligned_cols=33 Identities=12% Similarity=0.130 Sum_probs=22.4
Q ss_pred eeEEEeecCCcCcCCCeeEEEeCCCCceeEEEEeeee
Q 044780 131 CDFRVVEGSSWLFEPSSCTIYAGKSSAIVAQMLEKQT 167 (220)
Q Consensus 131 ~~~~v~~G~~~~~~~~~~~I~~~~~~~~VAeV~rk~~ 167 (220)
.+++| +| .=.----+|.+..+ |++|++-.|+.-
T Consensus 175 ~~l~v-~G-KRG~v~L~F~l~~~--g~~VG~G~K~lv 207 (218)
T PF12119_consen 175 ATLEV-DG-KRGDVTLNFELKEG--GEVVGTGSKRLV 207 (218)
T ss_pred ceeEe-ec-ceeeEEEEEEEeEC--CEEEeeEEEEEE
Confidence 37888 55 21100246888888 999999999984
No 51
>cd05830 Sortase_D_5 Sortase D (SrtD) is a membrane transpeptidase found in gram-positive bacteria that anchors surface proteins to peptidoglycans of the bacterial cell wall envelope. This involves a transpeptidation reaction in which the surface protein substrate is cleaved at the cell wall sorting signal and covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. Class D sortases are further classified into subfamilies 4 and 5. This group contains a subset of Class D sortases belonging to subfamily-5 represented by Streptomyces avermitilis SAV4337. Subfamily-5 sortases recognize a nonstandard sorting signal (LAXTG) and have replaced Sortase A in some gram-postive bacteria. They may play a housekeeping role in the cell.
Probab=21.01 E-value=1.8e+02 Score=22.45 Aligned_cols=20 Identities=15% Similarity=0.288 Sum_probs=9.4
Q ss_pred cCCeEEEcCCCCEEEEEEee
Q 044780 37 SGNFDVKDTNGNILFKVKNV 56 (220)
Q Consensus 37 ~~~f~V~D~~G~~vf~V~g~ 56 (220)
++.+.|+|.++...|+|...
T Consensus 69 Gd~i~v~~~~~~~~Y~V~~~ 88 (137)
T cd05830 69 GDKIVVETADGWYTYVVRSS 88 (137)
T ss_pred CCEEEEEECCeEEEEEEeEE
Confidence 34444444444444555443
No 52
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=20.68 E-value=9.8e+02 Score=25.01 Aligned_cols=118 Identities=11% Similarity=0.172 Sum_probs=63.0
Q ss_pred CCCEEEEEEeeccCccceEEEEcCCC-CceEE-EEeccccccceEEEEEcCCCCCCceEEE-EEEccccccccceEEEEE
Q 044780 46 NGNILFKVKNVFAFMRRRRVLLDGAG-NPIAT-IREKAMSRHRRWQVFRGESSDPRDLIFS-AKISSLWSFKTTKLNVFL 122 (220)
Q Consensus 46 ~G~~vf~V~g~~~s~~~k~~l~D~~G-~pL~~-i~~k~ls~~~~w~v~~g~~~~~~~~l~t-vkk~~~~~~~k~~~~V~~ 122 (220)
+++++|+.+- +.++.+.|.+| ++-.. ++.....++|.|. ++ ++.|+. +.-+. ++- ++. |++
T Consensus 318 ~tkiAfv~~~-----~~~L~~~D~dG~n~~~ve~~~~~~i~sP~~S---PD----G~~vAY~ts~e~-~~g-~s~--vYv 381 (912)
T TIGR02171 318 KAKLAFRNDV-----TGNLAYIDYTKGASRAVEIEDTISVYHPDIS---PD----GKKVAFCTGIEG-LPG-KSS--VYV 381 (912)
T ss_pred eeeEEEEEcC-----CCeEEEEecCCCCceEEEecCCCceecCcCC---CC----CCEEEEEEeecC-CCC-Cce--EEE
Confidence 5667777762 23899999997 55533 6666666677653 33 344554 32111 111 333 333
Q ss_pred cC--CCCCceeeEEEeecCCcCcCCCeeEEEeCCCCceeEEEEeeeece--eeecceeeEEEEEeCC
Q 044780 123 AN--NTREDVCDFRVVEGSSWLFEPSSCTIYAGKSSAIVAQMLEKQTVK--SIFLGKNNFMVTVHPN 185 (220)
Q Consensus 123 ~~--~~~~~~~~~~v~~G~~~~~~~~~~~I~~~~~~~~VAeV~rk~~~~--~~~~g~dty~v~V~pg 185 (220)
.+ ........|.| +.-.+ -.+.|..+ ++.+|.-|+---.++ ..+...+||.|..+.|
T Consensus 382 ~~L~t~~~~~vkl~v-e~aai----prwrv~e~-gdt~ivyv~~a~nn~d~~~~~~~stw~v~f~~g 442 (912)
T TIGR02171 382 RNLNASGSGLVKLPV-ENAAI----PRWRVLEN-GDTVIVYVSDASNNKDDATFAAYSTWQVPFANG 442 (912)
T ss_pred EehhccCCCceEeec-ccccc----cceEecCC-CCeEEEEEcCCCCCcchhhhhhcceEEEEecCC
Confidence 32 12233445555 43122 22344433 267777777655433 2356688898888866
No 53
>TIGR02527 dot_icm_IcmQ Dot/Icm secretion system protein IcmQ. Members of this protein family are the IcmQ component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the literature now seems to favor calling this the Dot/Icm system. This protein was shown to be essential for translocation (PubMed:15661013).
Probab=20.67 E-value=40 Score=27.81 Aligned_cols=30 Identities=17% Similarity=0.263 Sum_probs=25.2
Q ss_pred eccCccceEEEEcCCCCceEEEEecccccc
Q 044780 56 VFAFMRRRRVLLDGAGNPIATIREKAMSRH 85 (220)
Q Consensus 56 ~~~s~~~k~~l~D~~G~pL~~i~~k~ls~~ 85 (220)
..++.+..+..+|--|+||++++.|.+.+.
T Consensus 128 dIl~~~~dk~p~Dk~GkpLltLKdkai~Le 157 (182)
T TIGR02527 128 DIIHLSADKAPKDKLGKLLLTLKDKAIKLE 157 (182)
T ss_pred hcccCCcccCcccccCCcccccchhhhchh
Confidence 456788888999999999999999987653
No 54
>PF08904 DUF1849: Domain of unknown function (DUF1849); InterPro: IPR015000 This group of proteins are functionally uncharacterised.
Probab=20.32 E-value=3.8e+02 Score=23.38 Aligned_cols=64 Identities=19% Similarity=0.250 Sum_probs=38.3
Q ss_pred CCCceEEeCCCccEEEEEEEeeeeEecCCeEEEcCCCCEEEEEEeecc-----CccceEEEEcCCCCceEEEEe
Q 044780 11 AANPVAVISSHHPIDLAIVRKVMIFSSGNFDVKDTNGNILFKVKNVFA-----FMRRRRVLLDGAGNPIATIRE 79 (220)
Q Consensus 11 ~~~pv~vv~~~~~~~l~vk~k~~s~~~~~f~V~D~~G~~vf~V~g~~~-----s~~~k~~l~D~~G~pL~~i~~ 79 (220)
++.++.++|-+-...|.+.+- .+.=.|.+.+|+.+|.+.|... ..+--..+.+.+|.+..+-.+
T Consensus 4 aa~a~~l~pHRAvYdl~L~~~-----~~~s~i~~~~GRm~ye~~G~aC~Gyt~~~R~v~~~~~~eg~~~~td~~ 72 (252)
T PF08904_consen 4 AAAAVPLAPHRAVYDLSLDKS-----SGGSGIVGASGRMVYEFSGSACDGYTTNFRFVTRFQDTEGGVRLTDQQ 72 (252)
T ss_pred cccccccccceeEEEEEeccc-----CCCCCcccceEEEEEEEccCCCCCeEEEEEEEEEEEecCCCeEEEEee
Confidence 344455666322333333222 3345788999999999997543 234455666788887776544
No 55
>PF09629 YorP: YorP protein; InterPro: IPR018591 This entry is represented by Bacteriophage SP-beta, YorP. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. YorP is a 71 residue protein. The structure is of an alpha helix between two of five beta strands. The function is unknown. ; PDB: 2HEQ_A.
Probab=20.12 E-value=1.3e+02 Score=20.54 Aligned_cols=27 Identities=22% Similarity=0.327 Sum_probs=16.1
Q ss_pred EEEEeeeeEecCCeEEEcCCCCEEEEEE
Q 044780 27 AIVRKVMIFSSGNFDVKDTNGNILFKVK 54 (220)
Q Consensus 27 ~vk~k~~s~~~~~f~V~D~~G~~vf~V~ 54 (220)
.|-+++.|+.= ||+|.|++|.+-|-=+
T Consensus 32 ~IIe~l~S~~Y-DY~V~~~~GdI~~fKE 58 (71)
T PF09629_consen 32 KIIEKLHSATY-DYAVSDETGDITRFKE 58 (71)
T ss_dssp EEEEE---SS--SEEEEETTS-EEEE-G
T ss_pred chhhhhhhhee-eeeeecccCceeeeee
Confidence 34467778864 9999999999876543
No 56
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=20.00 E-value=3.6e+02 Score=19.76 Aligned_cols=12 Identities=25% Similarity=0.567 Sum_probs=5.2
Q ss_pred CeEEEcCCCCEE
Q 044780 39 NFDVKDTNGNIL 50 (220)
Q Consensus 39 ~f~V~D~~G~~v 50 (220)
++.++|.+|.++
T Consensus 66 nLvl~~~~g~~v 77 (116)
T cd00028 66 NLVIYDGSGTVV 77 (116)
T ss_pred CeEEEcCCCcEE
Confidence 444444444443
Done!