Query 044780
Match_columns 220
No_of_seqs 107 out of 475
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 11:29:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044780.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044780hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zxu_A AT5G01750 protein; PFAM 100.0 1.8E-45 6.2E-50 310.3 20.6 199 4-207 14-216 (217)
2 1zxu_A AT5G01750 protein; PFAM 98.2 4.5E-06 1.6E-10 69.4 9.5 98 21-123 60-162 (217)
3 3u88_M Histone-lysine N-methyl 62.6 2.6 9E-05 28.1 1.1 24 180-203 28-51 (75)
4 2fim_A Tubby related protein 1 47.5 1.3E+02 0.0043 25.4 12.7 107 70-186 36-162 (276)
5 3c5n_A Tubby-related protein 1 45.3 1.3E+02 0.0044 24.9 12.6 104 73-186 15-138 (246)
6 2v2f_A Penicillin binding prot 40.1 17 0.00057 19.1 1.9 13 41-53 8-20 (26)
7 1hzt_A Isopentenyl diphosphate 34.7 38 0.0013 25.8 4.0 56 38-93 4-68 (190)
8 3c12_A FLGD, flagellar protein 34.4 38 0.0013 25.2 3.8 17 62-78 41-57 (138)
9 2lqh_B Forkhead box O3, FOXO3A 33.3 13 0.00045 22.7 0.0 11 208-218 21-31 (52)
10 2dho_A Isopentenyl-diphosphate 26.9 1E+02 0.0036 24.8 5.5 55 37-91 26-92 (235)
11 2ln7_A LPXTG-SITE transpeptida 26.2 20 0.00069 27.1 0.9 19 37-55 79-97 (147)
12 2csp_A RIM-BP2, RIM binding pr 25.7 1.4E+02 0.0047 22.4 5.4 50 5-55 12-72 (130)
13 3u85_B Histone-lysine N-methyl 25.1 30 0.001 17.5 1.1 10 210-219 8-17 (21)
14 3osv_A Flagellar basal-BODY RO 24.9 1E+02 0.0035 22.7 4.8 15 40-54 41-55 (138)
15 4h3o_A Lectin; cadmium, plant 24.9 1.2E+02 0.0042 21.1 5.0 9 36-44 27-35 (105)
16 2pny_A Isopentenyl-diphosphate 23.7 91 0.0031 25.4 4.6 55 37-91 37-103 (246)
17 3lhn_A Lipoprotein; structural 22.6 1.4E+02 0.0049 22.0 5.1 51 23-82 46-101 (126)
18 1q27_A Putative nudix hydrolas 22.0 81 0.0028 23.2 3.7 53 37-89 6-65 (171)
19 2z4i_A Copper homeostasis prot 21.5 1.4E+02 0.0049 24.5 5.3 11 64-74 97-107 (233)
20 3dzw_A Agglutinin; lectin, man 20.7 1.8E+02 0.0063 20.1 5.2 38 36-75 27-64 (109)
21 4he6_A Peptidase family U32; u 20.6 96 0.0033 21.0 3.5 31 46-77 19-50 (89)
22 2h1z_A Hybrid atracotoxin; bet 20.2 73 0.0025 18.7 2.3 12 44-55 28-39 (39)
No 1
>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A
Probab=100.00 E-value=1.8e-45 Score=310.27 Aligned_cols=199 Identities=55% Similarity=0.901 Sum_probs=146.8
Q ss_pred CCCCCCCCCCceEEeCC----CccEEEEEEEeeeeEecCCeEEEcCCCCEEEEEEeeccCccceEEEEcCCCCceEEEEe
Q 044780 4 QPSFGGAAANPVAVISS----HHPIDLAIVRKVMIFSSGNFDVKDTNGNILFKVKNVFAFMRRRRVLLDGAGNPIATIRE 79 (220)
Q Consensus 4 ~~~~~~~~~~pv~vv~~----~~~~~l~vk~k~~s~~~~~f~V~D~~G~~vf~V~g~~~s~~~k~~l~D~~G~pL~~i~~ 79 (220)
.|+.-+|+.+|++||++ +++++|+||||+++|++++|+|+|++|+++|+|+++.++++.++.|+|++|+||++|++
T Consensus 14 ~~~~~~~~~~~~~vv~~~~~~~~~~~l~vkqk~~~~~~~~f~V~D~~G~~vf~V~~~~~~~~~~~~l~D~~G~~l~~i~r 93 (217)
T 1zxu_A 14 GPSGAPTPQAGGVVVDPKYCAPYPIDMAIVRKMMSLTDGNFVITDVNGNLLFKVKEPVFGLHDKRVLLDGSGTPVVTLRE 93 (217)
T ss_dssp ----------CCCSSCGGGBCSSCEEEEEECC-----CCCEEEEETTSCEEEEEECSSTTCCSEEEEECTTSCEEEEEEC
T ss_pred CCCCCCCCCCcEEEECccccCCCCcEEEEEEEEeEeeCCCEEEEeCCCCEEEEEEccccCCCCEEEEECCCCCEEEEEEc
Confidence 35666677789999965 68999999999999998899999999999999999999999999999999999999999
Q ss_pred ccccccceEEEEEcCCCCCCceEEEEEEccccccccceEEEEEcCCCCCceeeEEEeecCCcCcCCCeeEEEeCCCCcee
Q 044780 80 KAMSRHRRWQVFRGESSDPRDLIFSAKISSLWSFKTTKLNVFLANNTREDVCDFRVVEGSSWLFEPSSCTIYAGKSSAIV 159 (220)
Q Consensus 80 k~ls~~~~w~v~~g~~~~~~~~l~tvkk~~~~~~~k~~~~V~~~~~~~~~~~~~~v~~G~~~~~~~~~~~I~~~~~~~~V 159 (220)
|.++++++|++|+++..+.++++|++|+++.++ ++++++|++.+++.++.++|+| +| +|+ +++|+|+++++|++|
T Consensus 94 k~~~~~~~~~v~~~~~~~~~~~i~~vrk~~~~~-~~~~~~V~~~~~~~~~~~~~~I-~G-~~~--~~~f~I~~~~~~~~V 168 (217)
T 1zxu_A 94 KMVSMHDRWQVFRGGSTDQRDLLYTVKRSSMLQ-LKTKLDVFLGHNKDEKRCDFRV-KG-SWL--ERSCVVYAGESDAIV 168 (217)
T ss_dssp ------CEEEEEETTCCCGGGEEEEEEC--------CCEEEEETTCCC-CCCSEEE-ES-CTT--TTCCEEEETTTCCEE
T ss_pred cccccCcEEEEEcCCCCCCCcEEEEEEEecccc-CCCeEEEEECCCCCCCceEEEE-EE-eEe--CCEEEEEECCCCEEE
Confidence 999999999999987543346899999876567 5999999998755556689999 99 999 999999998557999
Q ss_pred EEEEeeeeceeeecceeeEEEEEeCCCCHHHHHHHHHHhhhhhhcCCC
Q 044780 160 AQMLEKQTVKSIFLGKNNFMVTVHPNVDYAFIVALIVILDEINRAGSG 207 (220)
Q Consensus 160 AeV~rk~~~~~~~~g~dty~v~V~pgvD~ali~alvi~lD~~~~~~~~ 207 (220)
|+|+|+|++++++.++|+|.|+|.|++|.+|++|+|+|||+|++++++
T Consensus 169 a~I~kk~~~~~~~~~~D~y~l~V~p~~D~aliialvv~iD~~~~~~~~ 216 (217)
T 1zxu_A 169 AQMHRKHTVQSVFLGKDNFSVTVYPNVDYAFIASLVVILDDVNREDRA 216 (217)
T ss_dssp EEEEEC--------CBCSEEEEECTTSBHHHHHHHHHHHHHHHC----
T ss_pred EEEEeeeeccccccCCcEEEEEECCCCCHHHHHHHHHHHHHhhhhccC
Confidence 999999988888999999999999999999999999999999998764
No 2
>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A
Probab=98.25 E-value=4.5e-06 Score=69.36 Aligned_cols=98 Identities=15% Similarity=0.239 Sum_probs=68.5
Q ss_pred CccEEEEEEEeeeeEecCCeEEEcCCCCEEEEEEeeccCccceEEEEcCCCC----ceEEEEec-cccccceEEEEEcCC
Q 044780 21 HHPIDLAIVRKVMIFSSGNFDVKDTNGNILFKVKNVFAFMRRRRVLLDGAGN----PIATIREK-AMSRHRRWQVFRGES 95 (220)
Q Consensus 21 ~~~~~l~vk~k~~s~~~~~f~V~D~~G~~vf~V~g~~~s~~~k~~l~D~~G~----pL~~i~~k-~ls~~~~w~v~~g~~ 95 (220)
.....|+|+.+.++++ +.+.|+|.+|+++++++-+.+++..+..++++.+. ||++|+++ .+++++.|+|+.++.
T Consensus 60 ~G~~vf~V~~~~~~~~-~~~~l~D~~G~~l~~i~rk~~~~~~~~~v~~~~~~~~~~~i~~vrk~~~~~~~~~~~V~~~~~ 138 (217)
T 1zxu_A 60 NGNLLFKVKEPVFGLH-DKRVLLDGSGTPVVTLREKMVSMHDRWQVFRGGSTDQRDLLYTVKRSSMLQLKTKLDVFLGHN 138 (217)
T ss_dssp TSCEEEEEECSSTTCC-SEEEEECTTSCEEEEEEC------CEEEEEETTCCCGGGEEEEEEC-------CCEEEEETTC
T ss_pred CCCEEEEEEccccCCC-CEEEEECCCCCEEEEEEccccccCcEEEEEcCCCCCCCcEEEEEEEeccccCCCeEEEEECCC
Confidence 4578999999877775 59999999999999999999999999999998875 79999987 356889999998754
Q ss_pred CCCCceEEEEEEccccccccceEEEEEc
Q 044780 96 SDPRDLIFSAKISSLWSFKTTKLNVFLA 123 (220)
Q Consensus 96 ~~~~~~l~tvkk~~~~~~~k~~~~V~~~ 123 (220)
...+.+.++++-. ++...|+|...
T Consensus 139 ~~~~~~~~~I~G~----~~~~~f~I~~~ 162 (217)
T 1zxu_A 139 KDEKRCDFRVKGS----WLERSCVVYAG 162 (217)
T ss_dssp CC-CCCSEEEESC----TTTTCCEEEET
T ss_pred CCCCceEEEEEEe----EeCCEEEEEEC
Confidence 3333567787743 33667888764
No 3
>3u88_M Histone-lysine N-methyltransferase MLL; menin, MEN1, MLL, JUND, ledgf, TPR, transcription; HET: CHD 0BR GGB; 3.00A {Homo sapiens}
Probab=62.55 E-value=2.6 Score=28.07 Aligned_cols=24 Identities=21% Similarity=0.149 Sum_probs=18.4
Q ss_pred EEEeCCCCHHHHHHHHHHhhhhhh
Q 044780 180 VTVHPNVDYAFIVALIVILDEINR 203 (220)
Q Consensus 180 v~V~pgvD~ali~alvi~lD~~~~ 203 (220)
|-|.||.|.+|-+..+|--+..+-
T Consensus 28 lgvgpGFDAALqvSa~Ig~nl~kf 51 (75)
T 3u88_M 28 LRVGPGFDAALQVSAAIGTNLRRF 51 (75)
T ss_dssp CEECCCCCHHHHHHHHHHHHHHHH
T ss_pred HccCcChhHHHHHHHHHHHHHHHH
Confidence 578999999999887776554443
No 4
>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A*
Probab=47.48 E-value=1.3e+02 Score=25.39 Aligned_cols=107 Identities=10% Similarity=0.153 Sum_probs=57.9
Q ss_pred CCCceEEEEecc--c--cccceEEEEEcCCCCCCceEEEEEEccccccccceEEEEEcCC---CCCceeeEEEeecCCcC
Q 044780 70 AGNPIATIREKA--M--SRHRRWQVFRGESSDPRDLIFSAKISSLWSFKTTKLNVFLANN---TREDVCDFRVVEGSSWL 142 (220)
Q Consensus 70 ~G~pL~~i~~k~--l--s~~~~w~v~~g~~~~~~~~l~tvkk~~~~~~~k~~~~V~~~~~---~~~~~~~~~v~~G~~~~ 142 (220)
.+..-+.|+|.. + .+.++|..|..+. .+..|+..||... +- ...|-|++... ..+....=+| +- ||+
T Consensus 36 ~~~iqC~I~R~k~g~~~g~yp~y~L~l~~~--~~~fLLaarK~k~-~~-ts~YiIS~d~~dlsr~s~~yvGKL-rS-Nfl 109 (276)
T 2fim_A 36 GRTVRCRLTRDKKGMDRGMYPSYFLHLDTE--KKVFLLAGRKRKR-SK-TANYLISIDPTNLSRGGENFIGKL-RS-NLL 109 (276)
T ss_dssp TCCEEEEEEEEC-------CCEEEEEECSS--SCEEEEEEEECTT-CS-SCEEEEESCTTC------CEEEEE-EE-CSS
T ss_pred CCeEEEEEEEeCCCCCCCCceEEEEEEeCC--CCEEEEEEEeccC-CC-CceEEEEecchhcccCCceEEEEE-EE-ccC
Confidence 345567775532 2 2457899998631 2355667776531 22 46788876432 1123334456 77 999
Q ss_pred cCCCeeEEEeCCC-------------CceeEEEEeeeeceeeecceeeEEEEEeCCC
Q 044780 143 FEPSSCTIYAGKS-------------SAIVAQMLEKQTVKSIFLGKNNFMVTVHPNV 186 (220)
Q Consensus 143 ~~~~~~~I~~~~~-------------~~~VAeV~rk~~~~~~~~g~dty~v~V~pgv 186 (220)
+..|+||+... .+.||.|.-+.+... ..|-..+.+.| |+.
T Consensus 110 --GtkF~iyD~G~~p~~~~s~~~~~~r~el~~V~Ye~nvlg-~~gPR~m~v~i-P~~ 162 (276)
T 2fim_A 110 --GNRFTVFDNGQNPQRGYSTNVASLRQELAAVIYETNVLG-FRGPRRMTVII-PGM 162 (276)
T ss_dssp --SSEEEEECSSBCGGGCTTSCGGGBCCEEEEEEEC----------CCEEEEE-ECB
T ss_pred --CCEEEEECCCCCcccccCcccccccEEEEEEEEEecccC-CCCCeEEEEEe-cCc
Confidence 99999998721 177888887754211 12334555555 544
No 5
>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A
Probab=45.31 E-value=1.3e+02 Score=24.85 Aligned_cols=104 Identities=11% Similarity=0.160 Sum_probs=58.1
Q ss_pred ceEEEEecc--c--cccceEEEEEcCCCCCCceEEEEEEccccccccceEEEEEcCCC---CCceeeEEEeecCCcCcCC
Q 044780 73 PIATIREKA--M--SRHRRWQVFRGESSDPRDLIFSAKISSLWSFKTTKLNVFLANNT---REDVCDFRVVEGSSWLFEP 145 (220)
Q Consensus 73 pL~~i~~k~--l--s~~~~w~v~~g~~~~~~~~l~tvkk~~~~~~~k~~~~V~~~~~~---~~~~~~~~v~~G~~~~~~~ 145 (220)
.-+.|+|.. + .+.++|..|..+. .+..|..+||... +- ...|-|++.... .+....=+| +- |++ +
T Consensus 15 ~qC~I~R~k~g~~~~~yp~y~l~~~~~--~~~fLlaark~~~-~~-~s~YiIS~d~~dlsr~s~~yvGKL-rs-Nf~--G 86 (246)
T 3c5n_A 15 VRCRLTRDKKGMDRGMYPSYFLHLDTE--KKVFLLAGRKRKR-SK-TANYLISIDPTNLSRGGENFIGKL-RS-NLL--G 86 (246)
T ss_dssp EEEEEEECC------CCCEEEEEESSS--SCCEEEEEEECTT-CS-SCEEEEESCTTC------CEEEEE-EE-CSS--S
T ss_pred EEEEEEEeCCCCCCCCceEEEEEEeCC--CcEEEEeeeeccC-CC-CceEEEEeCccccccCCceEEEEE-EE-ccC--C
Confidence 445666532 2 2457898888642 1345667776521 22 467888764321 123334456 77 999 9
Q ss_pred CeeEEEeCCC-------------CceeEEEEeeeeceeeecceeeEEEEEeCCC
Q 044780 146 SSCTIYAGKS-------------SAIVAQMLEKQTVKSIFLGKNNFMVTVHPNV 186 (220)
Q Consensus 146 ~~~~I~~~~~-------------~~~VAeV~rk~~~~~~~~g~dty~v~V~pgv 186 (220)
..|+||+... .+.||.|.-+.+... ..|--.+.+.+ |+.
T Consensus 87 t~F~iyD~g~~p~~~~s~~~~~~r~el~~v~Ye~n~l~-~~gPR~m~v~i-P~~ 138 (246)
T 3c5n_A 87 NRFTVFDNGQNPQRGYSTNVASLRQELAAVIYETNVLG-FRGPRRMTVII-PGM 138 (246)
T ss_dssp SEEEEECSCBCGGGCTTSCGGGBCCEEEEEEECCCCCC----CCCEEEEE-ECB
T ss_pred CEEEEECCCCCcccccCcccccccEEEEEEEEEecccC-CCCCeEEEEEe-cCc
Confidence 9999998721 177888888754211 12334555555 544
No 6
>2v2f_A Penicillin binding protein 1A; transpeptidase activity, peptidoglycan synthesis, transferase, hydrolase; HET: MES; 1.9A {Streptococcus pneumoniae} PDB: 2zc5_A* 2zc6_A*
Probab=40.14 E-value=17 Score=19.13 Aligned_cols=13 Identities=8% Similarity=0.365 Sum_probs=10.0
Q ss_pred EEEcCCCCEEEEE
Q 044780 41 DVKDTNGNILFKV 53 (220)
Q Consensus 41 ~V~D~~G~~vf~V 53 (220)
.|||.+|+++.++
T Consensus 8 ~IYD~~g~~i~~l 20 (26)
T 2v2f_A 8 KIYDNKNQLIADL 20 (26)
T ss_pred EEEeCCCCEeeec
Confidence 6788888887776
No 7
>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A*
Probab=34.68 E-value=38 Score=25.83 Aligned_cols=56 Identities=14% Similarity=0.148 Sum_probs=19.6
Q ss_pred CCeEEEcCCCCEEEEEEeeccC-------ccceEEEEcCCCCceEEEEecc-ccccceEEE-EEc
Q 044780 38 GNFDVKDTNGNILFKVKNVFAF-------MRRRRVLLDGAGNPIATIREKA-MSRHRRWQV-FRG 93 (220)
Q Consensus 38 ~~f~V~D~~G~~vf~V~g~~~s-------~~~k~~l~D~~G~pL~~i~~k~-ls~~~~w~v-~~g 93 (220)
+-++|+|++|+++..+.-.... ..-...|.+.+|+.|+.-|... -.+...|.. --|
T Consensus 4 E~~~v~d~~~~~~g~~~r~~~~~~~~~~~~~v~~~i~~~~g~vLl~~R~~~~~~~~g~w~~~PgG 68 (190)
T 1hzt_A 4 EHVILLNAQGVPTGTLEKYAAHTADTRLHLAFSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCG 68 (190)
T ss_dssp ---------------------------CEECEEEEEECTTCCEEEEEECTTCSSSTTCEEESEEE
T ss_pred eEEEEECCCCCEeeeEEHhhhcccCCceEEEEEEEEEcCCCEEEEEEeCCCCCCCCCcccCcccc
Confidence 4688999999999876654433 1224567888888777544322 234577887 444
No 8
>3c12_A FLGD, flagellar protein; HOOK capping, IG-like domain, FN-III domain, tudor-like domain, flagellar biogenesis, flagellum; 2.51A {Xanthomonas campestris PV}
Probab=34.38 E-value=38 Score=25.19 Aligned_cols=17 Identities=12% Similarity=0.163 Sum_probs=10.7
Q ss_pred ceEEEEcCCCCceEEEE
Q 044780 62 RRRVLLDGAGNPIATIR 78 (220)
Q Consensus 62 ~k~~l~D~~G~pL~~i~ 78 (220)
-.+.|+|.+|+.+-++.
T Consensus 41 v~v~I~d~~G~~V~t~~ 57 (138)
T 3c12_A 41 VNFEITDANGTFVKQLS 57 (138)
T ss_dssp EEEEEECSSCCEEEEEE
T ss_pred EEEEEEeCCCCEEEEEE
Confidence 35566666666666664
No 9
>2lqh_B Forkhead box O3, FOXO3A; promiscuous binding, intrinsic disorder, transcription; NMR {Homo sapiens} PDB: 2lqi_B
Probab=33.29 E-value=13 Score=22.67 Aligned_cols=11 Identities=64% Similarity=1.075 Sum_probs=5.2
Q ss_pred CCCCCcccCCC
Q 044780 208 SSSSGGVAGGG 218 (220)
Q Consensus 208 ~~~~~~~~~~~ 218 (220)
+|+-||.+|||
T Consensus 21 shsdgggsggg 31 (52)
T 2lqh_B 21 SHSDGGGSGGG 31 (52)
Confidence 35555544443
No 10
>2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein; 1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A*
Probab=26.92 E-value=1e+02 Score=24.78 Aligned_cols=55 Identities=13% Similarity=0.065 Sum_probs=35.8
Q ss_pred cCCeEEEcCCCCEEEEEEeeccC---------ccc--eEEEEcCCCCceEEEEecc-ccccceEEEE
Q 044780 37 SGNFDVKDTNGNILFKVKNVFAF---------MRR--RRVLLDGAGNPIATIREKA-MSRHRRWQVF 91 (220)
Q Consensus 37 ~~~f~V~D~~G~~vf~V~g~~~s---------~~~--k~~l~D~~G~pL~~i~~k~-ls~~~~w~v~ 91 (220)
.+-+.|+|++|+++.++.-+... ... ...|.|.+|+.|++-|... ..+...|..-
T Consensus 26 ~E~~~lvd~~~~~~G~~~r~~~h~~~~~~~g~~h~av~v~v~~~~g~lLLq~R~~~k~~~pg~W~~p 92 (235)
T 2dho_A 26 AEMCILIDENDNKIGAETKKNCHLNENIEKGLLHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNT 92 (235)
T ss_dssp CCEEEEECTTCCEEEEEEHHHHTBHHHHTTTCCEEEEEEEEECTTCCEEEEEECTTCSSSTTCEESS
T ss_pred CcEEEEEcCCCCEEEEEEhHHhccccccCCCceEEEEEEEEEcCCCEEEEEEecCcCCCCCCcEEec
Confidence 46799999999999998554322 111 3457888998887644332 2345678754
No 11
>2ln7_A LPXTG-SITE transpeptidase family protein; sortase, sortase family D, enzyme, protein binding; NMR {Bacillus anthracis}
Probab=26.18 E-value=20 Score=27.14 Aligned_cols=19 Identities=5% Similarity=0.228 Sum_probs=8.6
Q ss_pred cCCeEEEcCCCCEEEEEEe
Q 044780 37 SGNFDVKDTNGNILFKVKN 55 (220)
Q Consensus 37 ~~~f~V~D~~G~~vf~V~g 55 (220)
++.+.|++..+...|+|+.
T Consensus 79 GD~i~v~~~~~~~~Y~V~~ 97 (147)
T 2ln7_A 79 KDTLVLEYDNKTYTYEIQK 97 (147)
T ss_dssp TCEEEEEETTEEEEEEEEE
T ss_pred CCEEEEEECCcEEEEEEEe
Confidence 3444444444444444443
No 12
>2csp_A RIM-BP2, RIM binding protein 2; FN3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=25.70 E-value=1.4e+02 Score=22.37 Aligned_cols=50 Identities=18% Similarity=0.246 Sum_probs=28.0
Q ss_pred CCCCCCCCCceEEeCC--CccEEEEEEEeeeeEe----c-----CCeEEEcCCCCEEEEEEe
Q 044780 5 PSFGGAAANPVAVISS--HHPIDLAIVRKVMIFS----S-----GNFDVKDTNGNILFKVKN 55 (220)
Q Consensus 5 ~~~~~~~~~pv~vv~~--~~~~~l~vk~k~~s~~----~-----~~f~V~D~~G~~vf~V~g 55 (220)
-++++||.||.-|-=| +++-+|.|.=+.-.+. . -+|.|| .+|+.|..|..
T Consensus 12 Tl~aGpPdpP~dVqVe~Gp~pgtLlVsW~Pvt~~~~g~Snga~VtGY~VY-adGqkV~eV~~ 72 (130)
T 2csp_A 12 TLPAGPPAPPQDVTVQAGVTPATIRVSWRPPVLTPTGLSNGANVTGYGVY-AKGQRVAEVIF 72 (130)
T ss_dssp CCCCCCCCCCEEEEECCCSSTTEEEEEEECCCCCTTSCSSSSCEEEEEEE-SSSSEEEEECC
T ss_pred cCCCCCCCCCceeEEEeCCCCcEEEEEeECCcccCCCCCCCcceEEEEEE-eCCcEEEEecC
Confidence 4566888998888766 5665555533322221 0 135555 55555555554
No 13
>3u85_B Histone-lysine N-methyltransferase MLL; menin, MEN1, JUND, ledgf, TPR, transcription, epigeneti cancer; 3.00A {Homo sapiens}
Probab=25.08 E-value=30 Score=17.54 Aligned_cols=10 Identities=50% Similarity=1.086 Sum_probs=4.5
Q ss_pred CCCcccCCCC
Q 044780 210 SSGGVAGGGG 219 (220)
Q Consensus 210 ~~~~~~~~~~ 219 (220)
+-||+.++||
T Consensus 8 rpg~s~~sg~ 17 (21)
T 3u85_B 8 RPGTTGGGGG 17 (26)
T ss_pred CCCcccCCCc
Confidence 3444444444
No 14
>3osv_A Flagellar basal-BODY ROD modification protein FLG; FLGD, flagellum, P. aeruginosa, structural protein; 2.35A {Pseudomonas aeruginosa}
Probab=24.92 E-value=1e+02 Score=22.71 Aligned_cols=15 Identities=20% Similarity=0.547 Sum_probs=8.4
Q ss_pred eEEEcCCCCEEEEEE
Q 044780 40 FDVKDTNGNILFKVK 54 (220)
Q Consensus 40 f~V~D~~G~~vf~V~ 54 (220)
.+|+|++|++|.+++
T Consensus 41 v~I~d~~G~~V~t~~ 55 (138)
T 3osv_A 41 VNVYDDKGTVVNRIN 55 (138)
T ss_dssp EEEECTTSCEEEEEE
T ss_pred EEEEcCCCCEEEEEE
Confidence 455555555555554
No 15
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D*
Probab=24.90 E-value=1.2e+02 Score=21.07 Aligned_cols=9 Identities=22% Similarity=0.235 Sum_probs=5.1
Q ss_pred ecCCeEEEc
Q 044780 36 SSGNFDVKD 44 (220)
Q Consensus 36 ~~~~f~V~D 44 (220)
.++++.+++
T Consensus 27 ~DgNLvly~ 35 (105)
T 4h3o_A 27 DDCNLVLYD 35 (105)
T ss_dssp TTSCEEEEE
T ss_pred CCCeEEEEE
Confidence 345666665
No 16
>2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isomerase isoprene biosynthesis, lipid synthesis; HET: GOL; 1.81A {Homo sapiens}
Probab=23.72 E-value=91 Score=25.42 Aligned_cols=55 Identities=11% Similarity=0.046 Sum_probs=35.2
Q ss_pred cCCeEEEcCCCCEEEEEEeeccC--------ccc---eEEEEcCCCCceEEEEecc-ccccceEEEE
Q 044780 37 SGNFDVKDTNGNILFKVKNVFAF--------MRR---RRVLLDGAGNPIATIREKA-MSRHRRWQVF 91 (220)
Q Consensus 37 ~~~f~V~D~~G~~vf~V~g~~~s--------~~~---k~~l~D~~G~pL~~i~~k~-ls~~~~w~v~ 91 (220)
.+-+.|+|++|+++.++.-+... ..+ ...|.|.+|+.|++-|... ..+...|..-
T Consensus 37 ~E~~~lvd~~~~~iG~~~r~~~h~~~~~~~g~~h~av~v~v~~~~g~lLLqrRs~~K~~~pG~W~~p 103 (246)
T 2pny_A 37 EEMLIVVDENDKVIGADTKRNCHLNENIEKGLLHRAFSVVLFNTKNRILIQQRSDTKVTFPGYFTDS 103 (246)
T ss_dssp TCEEEEECTTCCEEEEEEHHHHTBHHHHTTTCCEEEEEEEEECTTCCEEEEEECTTCSSSTTCBCCS
T ss_pred cceEEEEcCCCCEEEEEEhHHhccccccCCCcEEEEEEEEEEeCCCEEEEEEecCCCCCCCCceEec
Confidence 45799999999999998654221 111 3457898998777544322 2345567743
No 17
>3lhn_A Lipoprotein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lipid binding protein; HET: MSE GOL; 1.42A {Shewanella oneidensis}
Probab=22.56 E-value=1.4e+02 Score=21.98 Aligned_cols=51 Identities=18% Similarity=0.277 Sum_probs=25.9
Q ss_pred cEEEEEEEeeeeEecCCeEEEcC---CCCEEEEEEeec-c-CccceEEEEcCCCCceEEEEeccc
Q 044780 23 PIDLAIVRKVMIFSSGNFDVKDT---NGNILFKVKNVF-A-FMRRRRVLLDGAGNPIATIREKAM 82 (220)
Q Consensus 23 ~~~l~vk~k~~s~~~~~f~V~D~---~G~~vf~V~g~~-~-s~~~k~~l~D~~G~pL~~i~~k~l 82 (220)
.++|++.+ ++.|..... .....|...|+. + .-.+.+.| +..| .|.+....|
T Consensus 46 ~ttLtL~~------Dgty~l~~~Yl~~~~~~~~~~G~~~w~~~g~~i~L-~~~~--~y~V~en~L 101 (126)
T 3lhn_A 46 QTTLTLQA------DNSFELKSIYLGKDESIFKVAGKFDWDSNGSKITL-SDGS--KYLVGENQL 101 (126)
T ss_dssp EEEEEECT------TSEEEEEEEEESTTCEEEEEEEEEEECTTSCEEEE-TTSC--EEEEETTEE
T ss_pred EEEEEECC------CCCEEEEEEECCCCCCCeEeeeEEEEeCCCCEEEE-cCCC--eEEEcCCEE
Confidence 56666643 345555532 335578888862 1 12234444 6555 555544433
No 18
>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A
Probab=21.98 E-value=81 Score=23.23 Aligned_cols=53 Identities=8% Similarity=0.031 Sum_probs=32.6
Q ss_pred cCCeEEEcCCCCEEEEEEeecc------CccceEEEEcCCCCceEEEEeccc-cccceEE
Q 044780 37 SGNFDVKDTNGNILFKVKNVFA------FMRRRRVLLDGAGNPIATIREKAM-SRHRRWQ 89 (220)
Q Consensus 37 ~~~f~V~D~~G~~vf~V~g~~~------s~~~k~~l~D~~G~pL~~i~~k~l-s~~~~w~ 89 (220)
.+-++|+|.+|+++.++.-... ...-...+.+.+|+.|+.-|...- .+...|.
T Consensus 6 ~E~~~~~d~~~~~~g~~~r~~~~l~~~~~~~v~v~i~~~~~~vLl~~r~~~~~~~~g~w~ 65 (171)
T 1q27_A 6 DERLDLVNERDEVVGQILRTDPALRWERVRVVNAFLRNSQGQLWIPRRSPSKSLFPNALD 65 (171)
T ss_dssp SSEEEEESSSSCEEEEEESSCTTSCTTSCEEEEEEEEETTTEEEECCSCCSSSCCCCSCC
T ss_pred ceeeeeecCCCCEeceEEhhhhccccccceEEEEEEECCCCeEEEEEecCCCCCCCCccc
Confidence 4578999999999998665443 112245567888876654332221 1345676
No 19
>2z4i_A Copper homeostasis protein CUTF; outer memblane lipoprotein, beta barrel, OB-fold, 3D domain swapping, signaling protein activator; HET: P6G; 2.60A {Escherichia coli} PDB: 2z4h_A*
Probab=21.52 E-value=1.4e+02 Score=24.48 Aligned_cols=11 Identities=55% Similarity=0.860 Sum_probs=5.2
Q ss_pred EEEEcCCCCce
Q 044780 64 RVLLDGAGNPI 74 (220)
Q Consensus 64 ~~l~D~~G~pL 74 (220)
+.++|.+|+++
T Consensus 97 L~mLD~~G~~i 107 (233)
T 2z4i_A 97 LEMLDREGNPI 107 (233)
T ss_dssp EEEECTTSCBC
T ss_pred EEEECCCCCcC
Confidence 44444444444
No 20
>3dzw_A Agglutinin; lectin, mannobiose, mannose-alpha1, 3-mannose, D sugar binding protein; HET: MAN; 1.70A {Narcissus pseudonarcissus} SCOP: b.78.1.1 PDB: 1npl_A* 1jpc_A* 1msa_A* 1niv_A*
Probab=20.72 E-value=1.8e+02 Score=20.11 Aligned_cols=38 Identities=18% Similarity=0.178 Sum_probs=16.4
Q ss_pred ecCCeEEEcCCCCEEEEEEeeccCccceEEEEcCCCCceE
Q 044780 36 SSGNFDVKDTNGNILFKVKNVFAFMRRRRVLLDGAGNPIA 75 (220)
Q Consensus 36 ~~~~f~V~D~~G~~vf~V~g~~~s~~~k~~l~D~~G~pL~ 75 (220)
.++++.++|. + .++.+.+..-........++.+|+-++
T Consensus 27 ~dGnLvly~~-~-~~vW~snt~~~~~~~~l~l~~dGNLvl 64 (109)
T 3dzw_A 27 EDCNLVLYDV-D-KPIWATNTGGLDRRCHLSMQSDGNLVV 64 (109)
T ss_dssp TTSCEEEEET-T-EEEEECCCTTSSSSCEEEECTTSCEEE
T ss_pred CCCcEEEEeC-C-EEEEECCcccCCCCEEEEEeCCCCEEE
Confidence 3456777765 3 344444332111223333444555443
No 21
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=20.56 E-value=96 Score=20.97 Aligned_cols=31 Identities=13% Similarity=-0.048 Sum_probs=22.4
Q ss_pred CCCEEEEEEeeccCccceEEEEcCCC-CceEEE
Q 044780 46 NGNILFKVKNVFAFMRRRRVLLDGAG-NPIATI 77 (220)
Q Consensus 46 ~G~~vf~V~g~~~s~~~k~~l~D~~G-~pL~~i 77 (220)
+|.....++++ ++.++.+.|+-+.| +.-++|
T Consensus 19 ~g~~~ie~rN~-f~~GD~iEi~~P~g~~~~~~v 50 (89)
T 4he6_A 19 TGIATVQQRNH-FRPGDEVEFFGPEIENFTQVI 50 (89)
T ss_dssp TTEEEEEESSC-BCTTCEEEEESTTSCCEEEEC
T ss_pred CCEEEEEEcCC-cCCCCEEEEEcCCCCcEEEEe
Confidence 46667777776 56788999999988 444554
No 22
>2h1z_A Hybrid atracotoxin; beta-hairpin, cystine knot; NMR {Hadronyche versuta}
Probab=20.21 E-value=73 Score=18.69 Aligned_cols=12 Identities=17% Similarity=0.565 Sum_probs=9.8
Q ss_pred cCCCCEEEEEEe
Q 044780 44 DTNGNILFKVKN 55 (220)
Q Consensus 44 D~~G~~vf~V~g 55 (220)
++||+.|+|.+.
T Consensus 28 NeNGntV~rC~~ 39 (39)
T 2h1z_A 28 NENGHTVYYCRA 39 (39)
T ss_dssp CSSCCEEEEEEC
T ss_pred ccCCCEEEeecC
Confidence 489999999863
Done!