BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044782
(427 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2G5C|A Chain A, Crystal Structure Of Prephenate Dehydrogenase From Aquifex
Aeolicus
pdb|2G5C|B Chain B, Crystal Structure Of Prephenate Dehydrogenase From Aquifex
Aeolicus
pdb|2G5C|C Chain C, Crystal Structure Of Prephenate Dehydrogenase From Aquifex
Aeolicus
pdb|2G5C|D Chain D, Crystal Structure Of Prephenate Dehydrogenase From Aquifex
Aeolicus
Length = 281
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 153 FRDVGDALFYVLIDESRDASMKEQMSVVLRYV-DKNEFVIERFIGLKHVTSTTAISLKEA 211
FR++ L Y+L S DA++ +Q SV + V D + +RF+G + T ++ +
Sbjct: 75 FREIAKKLSYIL---SEDATVTDQGSVKGKLVYDLENILGKRFVGGHPIAGTEKSGVEYS 131
Query: 212 LDQLFSKHGLSISRLRGQEKQLLSVVEALEND 243
LD L+ + ++ + +K+ L +V+ + D
Sbjct: 132 LDNLYEGKKVILTPTKKTDKKRLKLVKRVWED 163
>pdb|3GGG|D Chain D, The Crystal Structure Of A. Aeolicus Prephenate
Dehydrogenase In Complex With Tyrosine And Nad+
pdb|3GGG|A Chain A, The Crystal Structure Of A. Aeolicus Prephenate
Dehydrogenase In Complex With Tyrosine And Nad+
pdb|3GGO|A Chain A, Crystal Structure Of Prephenate Dehydrogenase From A.
Aeolicus With Hpp And Nadh
pdb|3GGO|B Chain B, Crystal Structure Of Prephenate Dehydrogenase From A.
Aeolicus With Hpp And Nadh
pdb|3GGO|C Chain C, Crystal Structure Of Prephenate Dehydrogenase From A.
Aeolicus With Hpp And Nadh
pdb|3GGO|D Chain D, Crystal Structure Of Prephenate Dehydrogenase From A.
Aeolicus With Hpp And Nadh
pdb|3GGP|A Chain A, Crystal Structure Of Prephenate Dehydrogenase From A.
Aeolicus In Complex With Hydroxyphenyl Propionate And
Nad+
pdb|3GGP|B Chain B, Crystal Structure Of Prephenate Dehydrogenase From A.
Aeolicus In Complex With Hydroxyphenyl Propionate And
Nad+
pdb|3GGP|C Chain C, Crystal Structure Of Prephenate Dehydrogenase From A.
Aeolicus In Complex With Hydroxyphenyl Propionate And
Nad+
pdb|3GGP|D Chain D, Crystal Structure Of Prephenate Dehydrogenase From A.
Aeolicus In Complex With Hydroxyphenyl Propionate And
Nad+
pdb|3GGG|B Chain B, The Crystal Structure Of A. Aeolicus Prephenate
Dehydrogenase In Complex With Tyrosine And Nad+
pdb|3GGG|C Chain C, The Crystal Structure Of A. Aeolicus Prephenate
Dehydrogenase In Complex With Tyrosine And Nad+
Length = 314
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 153 FRDVGDALFYVLIDESRDASMKEQMSVVLRYV-DKNEFVIERFIGLKHVTSTTAISLKEA 211
FR++ L Y+L S DA++ +Q SV + V D + +RF+G + T ++ +
Sbjct: 107 FREIAKKLSYIL---SEDATVTDQGSVKGKLVYDLENILGKRFVGGHPIAGTEKSGVEYS 163
Query: 212 LDQLFSKHGLSISRLRGQEKQLLSVVEALEND 243
LD L+ + ++ + +K+ L +V+ + D
Sbjct: 164 LDNLYEGKKVILTPTKKTDKKRLKLVKRVWED 195
>pdb|3H0L|B Chain B, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|E Chain E, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|H Chain H, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|K Chain K, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|N Chain N, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|Q Chain Q, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|T Chain T, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|W Chain W, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|B Chain B, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|E Chain E, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|H Chain H, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|K Chain K, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|N Chain N, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|Q Chain Q, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|T Chain T, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|W Chain W, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|B Chain B, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|E Chain E, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|H Chain H, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|K Chain K, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|N Chain N, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|Q Chain Q, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|T Chain T, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|W Chain W, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
Length = 478
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 196 GLKHVTSTTAISLKEALDQLFSKHGLSISRLRGQEKQLLS 235
GLK +T I KE + ++F KH + RL+ E++L+
Sbjct: 411 GLKQITDENQI--KELVKKIFEKHPKEVERLKQGEEKLIG 448
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,920,109
Number of Sequences: 62578
Number of extensions: 478078
Number of successful extensions: 1238
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1237
Number of HSP's gapped (non-prelim): 5
length of query: 427
length of database: 14,973,337
effective HSP length: 102
effective length of query: 325
effective length of database: 8,590,381
effective search space: 2791873825
effective search space used: 2791873825
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)