BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044782
(427 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5SVZ6|ZMYM1_HUMAN Zinc finger MYM-type protein 1 OS=Homo sapiens GN=ZMYM1 PE=2 SV=1
Length = 1142
Score = 89.0 bits (219), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 100/432 (23%), Positives = 172/432 (39%), Gaps = 101/432 (23%)
Query: 80 LLLEQGLAFRGHDESDNSSNQGNYLRILRFLA-DHNEDIKKVTLKNAPGNNMLTAPSIQK 138
L +Q L RG+D+S +S N+GN+L +L A D E+ ++ N + IQ
Sbjct: 563 FLGKQCLPLRGNDQSVSSVNKGNFLELLEMRAKDKGEETFRLMNSQVDFYN---STQIQS 619
Query: 139 DIVRACSIETTNAIFRDVGDA-LFYVLIDESRDASMKEQMSVVLRYVDKNEFVI---ERF 194
DI+ E I ++ D+ F ++ DE+ +++MKEQ+S+ +RY K+ I ERF
Sbjct: 620 DIIEIIKTEMLQDIVNEINDSSAFSIICDETINSAMKEQLSICVRYPQKSSKAILIKERF 679
Query: 195 IGLKHVTSTTAISLKEALDQLFSK--------HG-------------------------- 220
+G T L + + HG
Sbjct: 680 LGFVDTEEMTGTHLHRTIKTYLQQIGVDMDKIHGQAYDSTTNLKIKFNKIAAEFKKEEPR 739
Query: 221 ------------LSISRLRGQEKQLLSVVEALE---NDDLPSGQ-----------GQNQE 254
LSI R + K+L S ++ L N SG+ QN+
Sbjct: 740 ALYIHCYAHFLDLSIIRFCKEVKELRSALKTLSSLFNTICMSGEMLANFRNIYRLSQNKT 799
Query: 255 ITLKRFGDTQWGSHYGTLLHIISLFPHIISVLEIVAKDKSNSSEQRFQANNLIEFMQSFD 314
K + W H TLL +I P II LE++A SN+S + ++L+ + F+
Sbjct: 800 CK-KHISQSCWTVHDRTLLSVIDSLPEIIETLEVIASHSSNTSFAD-ELSHLLTLVSKFE 857
Query: 315 FVLSLYLMRDILALSNELSQALQRKDQDILNAIKLVEICKKNLQMMRDNGW-DSLLSEAS 373
FV L + +L+++ LS+ LQ K DI + +E + L R++ + ++
Sbjct: 858 FVFCLKFLYRVLSVTGILSKELQNKTIDIFSLSSKIEAILECLSSERNDVYFKTIWDGTE 917
Query: 374 SFC--------------------LKHDIDVPNMNDVFLPWGRSRRKAREISNMHYFRVEL 413
C ++ +D+ N +++F P S +++ +
Sbjct: 918 EICQKITCKGFKVEKPSLQKRRKIQKSVDLGNSDNMFFP----------TSTEEQYKINI 967
Query: 414 FFAVLDLQLQEL 425
++ LD LQ L
Sbjct: 968 YYQGLDTILQNL 979
>sp|O43422|P52K_HUMAN 52 kDa repressor of the inhibitor of the protein kinase OS=Homo
sapiens GN=PRKRIR PE=1 SV=2
Length = 761
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 70/154 (45%), Gaps = 4/154 (2%)
Query: 80 LLLEQGLAFRGHDESDNSS---NQGNYLRILRFLADHNEDIKKVTLKNAPGNNMLTAPSI 136
L+ +Q + GH+ + N+ +L + E++ + + N + + +
Sbjct: 175 LMGKQNIPLDGHEADEIPEGLFTPDNFQALLECRINSGEEVLRKRFETTAVNTLFCSKTQ 234
Query: 137 QKDIVRACSIETTNAIFRDVGDALFYVLI-DESRDASMKEQMSVVLRYVDKNEFVIERFI 195
Q+ ++ C R+V D+ F+ +I D+ D + +E + V++R+VD++ + E FI
Sbjct: 235 QRQMLEICESCIREETLREVRDSHFFSIITDDVVDIAGEEHLPVLVRFVDESHNLREEFI 294
Query: 196 GLKHVTSTTAISLKEALDQLFSKHGLSISRLRGQ 229
G + I + + K GL++ RGQ
Sbjct: 295 GFLPYEADAEILAVKFHTMITEKWGLNMEYCRGQ 328
>sp|Q9CUX1|P52K_MOUSE 52 kDa repressor of the inhibitor of the protein kinase OS=Mus
musculus GN=Prkrir PE=2 SV=2
Length = 758
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/154 (20%), Positives = 68/154 (44%), Gaps = 4/154 (2%)
Query: 80 LLLEQGLAFRGHDESDNSSN---QGNYLRILRFLADHNEDIKKVTLKNAPGNNMLTAPSI 136
L+ +Q + GH+ + N+ +L + E++ + + N + + +
Sbjct: 171 LMGKQNIPLDGHEADEVPEGLFAPDNFQALLECRINSGEEVLRKRFEATAVNTLFCSKTQ 230
Query: 137 QKDIVRACSIETTNAIFRDVGDALFYVLI-DESRDASMKEQMSVVLRYVDKNEFVIERFI 195
Q+ ++ C R+V D+ F+ +I D+ D + +E + V++R+VD + E F+
Sbjct: 231 QRHMLEICESCIREETLREVRDSHFFSIITDDVVDIAGEEHLPVLVRFVDDAHNLREEFV 290
Query: 196 GLKHVTSTTAISLKEALDQLFSKHGLSISRLRGQ 229
G + I + + K GL++ RGQ
Sbjct: 291 GFLPYEADAEILAVKFHTTITEKWGLNMEYCRGQ 324
>sp|O22604|CFI_IPOPU Chalcone--flavonone isomerase OS=Ipomoea purpurea GN=CHI PE=2 SV=1
Length = 241
Score = 35.0 bits (79), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 11/101 (10%)
Query: 145 SIETTNAIFRD----VGDALFY-------VLIDESRDASMKEQMSVVLRYVDKNEFVIER 193
+I+ N +F D G ++F+ + + S+D SM E S V+ +E V+E
Sbjct: 133 AIDKFNDVFSDQMFPPGASIFFTQSPLGSLTVSFSKDGSMPEIASAVIENKPLSEAVLES 192
Query: 194 FIGLKHVTSTTAISLKEALDQLFSKHGLSISRLRGQEKQLL 234
IG K V+ SL L ++F G +IS G E ++
Sbjct: 193 IIGSKGVSPEAKQSLAVRLSEMFINGGDAISGKVGVENDVI 233
>sp|Q8S911|CFI_IPOBA Chalcone--flavonone isomerase OS=Ipomoea batatas GN=CHI PE=2 SV=1
Length = 243
Score = 32.7 bits (73), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 12/88 (13%)
Query: 145 SIETTNAIFRD----VGDALFY-------VLIDESRDASMKEQMSVVLRYVDKNEFVIER 193
+IE N +F D G ++F+ + I S++ SM E S V+ +E V+E
Sbjct: 133 AIEKFNDVFSDQMFPPGASIFFTQSPHGSLTISFSKEGSMPEIASAVIENKPLSEAVLES 192
Query: 194 FIGLKHVTSTTAISLKEALDQLFSKHGL 221
IG K V+ SL L +LF K+G+
Sbjct: 193 IIGSKGVSPEAKQSLAVRLSELF-KNGV 219
>sp|Q0CPP9|MSH3_ASPTN DNA mismatch repair protein msh3 OS=Aspergillus terreus (strain NIH
2624 / FGSC A1156) GN=msh3 PE=3 SV=1
Length = 1117
Score = 32.7 bits (73), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 76/172 (44%), Gaps = 22/172 (12%)
Query: 156 VGDALFYVLIDESRDASMKEQMSVVLRYVDKNEFVIERFIGLKHVTSTTAISLKEALDQL 215
G++ F V + E+ D +L+ VI +G + ++ +++ +A+
Sbjct: 939 AGESTFMVELSETAD---------ILKQATPRSLVILDELG-RGTSTHDGVAIAQAVLDY 988
Query: 216 FSKHGLSISRLRGQEKQLLSVVEALENDDL--------PSGQGQNQEIT-LKRFGDTQWG 266
+ S++ + L S+V + N +L SG GQ++EIT L G+
Sbjct: 989 MVRSLRSLTLFITHYQHLSSMVHSFPNHELRNVHMRFTESGSGQDEEITFLYEVGEGVAH 1048
Query: 267 SHYGTLLHIISLFPHIISVLEIVAKDKSNSSEQRFQANNLIEFMQSFDFVLS 318
YG L++ L + ++E VAK KS EQ+ + L M + + ++S
Sbjct: 1049 RSYG--LNVARLANLPVPLIE-VAKQKSAELEQKIRRRRLAGLMSTVENIMS 1097
>sp|Q3V036|CCD27_MOUSE Coiled-coil domain-containing protein 27 OS=Mus musculus GN=Ccdc27
PE=2 SV=1
Length = 639
Score = 32.7 bits (73), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 6/64 (9%)
Query: 318 SLYLMRDILALSNELSQALQRKDQDILNAIKLVEICKKNLQ-MMRDNGWDSLLSEASSFC 376
SL LM + L +E+ +Q+KDQ+IL K E KK L+ ++R G +E SS
Sbjct: 194 SLLLMGEELQRFSEMESQMQKKDQEILTLQKEKEALKKQLKNLLRGKG-----TETSSAS 248
Query: 377 LKHD 380
+K D
Sbjct: 249 IKMD 252
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 152,538,557
Number of Sequences: 539616
Number of extensions: 6338834
Number of successful extensions: 16958
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 16946
Number of HSP's gapped (non-prelim): 26
length of query: 427
length of database: 191,569,459
effective HSP length: 120
effective length of query: 307
effective length of database: 126,815,539
effective search space: 38932370473
effective search space used: 38932370473
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)