Query 044782
Match_columns 427
No_of_seqs 241 out of 1355
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 06:42:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044782.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044782hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14291 DUF4371: Domain of un 100.0 1.4E-49 2.9E-54 371.2 15.6 197 38-237 16-229 (235)
2 smart00597 ZnF_TTF zinc finger 99.1 4.7E-11 1E-15 93.3 3.5 66 2-70 11-87 (90)
3 KOG1121 Tam3-transposase (Ac f 96.2 1.7 3.8E-05 46.7 24.3 261 79-380 105-433 (641)
4 PF04937 DUF659: Protein of un 89.4 1.5 3.3E-05 38.0 7.2 67 159-232 32-100 (153)
5 PF06220 zf-U1: U1 zinc finger 68.2 0.96 2.1E-05 29.3 -1.1 33 17-57 4-37 (38)
6 KOG0717 Molecular chaperone (D 56.2 4.3 9.3E-05 41.0 0.4 36 17-62 293-329 (508)
7 PRK13454 F0F1 ATP synthase sub 46.1 1.5E+02 0.0033 26.3 8.7 51 313-363 35-87 (181)
8 KOG0150 Spliceosomal protein F 34.2 14 0.00031 35.3 0.2 41 10-58 4-44 (336)
9 cd01648 TERT TERT: Telomerase 32.8 90 0.002 25.4 4.8 40 177-224 52-92 (119)
10 PHA02604 rI.-1 hypothetical pr 29.8 2.4E+02 0.0051 23.4 6.5 25 266-290 39-63 (126)
11 smart00451 ZnF_U1 U1-like zinc 25.1 14 0.00031 22.7 -1.1 32 16-56 3-34 (35)
12 PRK14471 F0F1 ATP synthase sub 22.4 5E+02 0.011 22.3 8.3 47 314-362 17-63 (164)
13 PF14698 ASL_C2: Argininosucci 21.8 35 0.00076 25.2 0.3 13 79-91 9-21 (70)
14 PF15469 Sec5: Exocyst complex 20.8 5.7E+02 0.012 22.3 11.4 70 300-380 70-141 (182)
No 1
>PF14291 DUF4371: Domain of unknown function (DUF4371)
Probab=100.00 E-value=1.4e-49 Score=371.23 Aligned_cols=197 Identities=36% Similarity=0.549 Sum_probs=185.1
Q ss_pred CCCCCCCCC--ChhHHHHHHHHHHHhcccchhHHHHHhhhHHH---------------HHHhhcCCccccCCCCCCCCCC
Q 044782 38 YNPNHVGGP--NSAHNKAVGYCEDLMKQEQHVRTFFNKHSDQD---------------RLLLEQGLAFRGHDESDNSSNQ 100 (427)
Q Consensus 38 ~~~~H~~e~--s~~H~~a~~~~~~~~~~~~~i~~~~~~~~~~~---------------~~l~~q~l~~rg~~~~~~~~n~ 100 (427)
..++| +. |..|+.||..|..+.+...+|+..++++.+++ +|||+||||||||+|+.++.|+
T Consensus 16 ~~~~H--e~~~s~~H~~a~~~~~~~~~~~~~I~~~l~~~~~~~~~~nR~~L~~ii~~i~fL~~QgLa~RGh~e~~~s~n~ 93 (235)
T PF14291_consen 16 RFKKH--EKSVSSSHKNAMEAWKEFKQQKQSIDSQLQKQRKEEIEENRQYLKRIIDVILFLARQGLAFRGHDESEDSLNN 93 (235)
T ss_pred hHHhh--CCCCCHHHHHHHHHHHHHhccccccchHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcccccccCCcccccccc
Confidence 35789 88 99999999999999877788999888775553 9999999999999999999999
Q ss_pred ccHHHHHHHHhhccHHHHHHHHhcCCCCccccCcchHHHHHHHHHHHHHHHHHhhhcCcceEEEecccCCcccchhheee
Q 044782 101 GNYLRILRFLADHNEDIKKVTLKNAPGNNMLTAPSIQKDIVRACSIETTNAIFRDVGDALFYVLIDESRDASMKEQMSVV 180 (427)
Q Consensus 101 gnF~~ll~l~~~~d~~l~~~~l~~~~~~~~y~S~~iqneiI~~~~~~i~~~I~~~i~~~~FSi~~DettDis~~eqlsi~ 180 (427)
|||++|+++++++||.+++|+...++++..|+|+++||+| ++||+.+++.|++++++++|||++|||+|+|++|||+|+
T Consensus 94 GNFl~ll~l~~~~d~~l~~~~~~~~~~~~~~~s~~iq~~i-~~~a~~v~~~I~~~v~~~~FSii~DettDis~~eQl~i~ 172 (235)
T PF14291_consen 94 GNFLELLELLAKYDPELKKHLSKNAPKNAKYSSKTIQNEI-EILADHVRQSIVEEVKSKYFSIIVDETTDISNKEQLSIC 172 (235)
T ss_pred ccHHHHHHHHHhhcccchhhhhcccccceeccHHHHHHHH-HHHHHHHHHHHHhhccccceeeeeeccccccccchhhhe
Confidence 9999999999999999999866788889999999999999 999999999999999889999999999999999999999
Q ss_pred EEEeccCCceeeeeeeccccccccHHHHHHHHHHHHHHcCCCccceEeeeechhhHH
Q 044782 181 LRYVDKNEFVIERFIGLKHVTSTTAISLKEALDQLFSKHGLSISRLRGQEKQLLSVV 237 (427)
Q Consensus 181 vRyv~~~~~i~E~fl~~~~~~~~ta~~l~~~i~~~L~~~~l~~~~~~gq~yd~~~i~ 237 (427)
||||+.++.|+|+||+|++++++||++|+++|++.|+++|||+++|+|||||.+..+
T Consensus 173 vRyv~~~~~i~E~Fl~f~~~~~~ta~~l~~~i~~~L~~~~l~~~~~~gq~yDgas~M 229 (235)
T PF14291_consen 173 VRYVDKDGKIKERFLGFVELEDTTAESLFNAIKDVLEKLGLDLSNCRGQCYDGASNM 229 (235)
T ss_pred eeeeccCcceeeeeeeeeccCCccHHHHHHHHHHHHHHcCCCHHHcCcccccChHhh
Confidence 999998889999999999999999999999999999999999999999999976655
No 2
>smart00597 ZnF_TTF zinc finger in transposases and transcription factors.
Probab=99.11 E-value=4.7e-11 Score=93.30 Aligned_cols=66 Identities=26% Similarity=0.297 Sum_probs=48.2
Q ss_pred CCCCCCcccCcCCCCccccccccCCC--CCCCC----CCCCCC-----CCCCCCCCChhHHHHHHHHHHHhcccchhHHH
Q 044782 2 LQFPERDESGPEKRNKFDLELSELPS--DPRQR----PPISSY-----NPNHVGGPNSAHNKAVGYCEDLMKQEQHVRTF 70 (427)
Q Consensus 2 ~~~~~wl~ys~~~~~~fC~~C~~~~~--~~~~~----~~~~~~-----~~~H~~e~s~~H~~a~~~~~~~~~~~~~i~~~ 70 (427)
.++++||+||+.+|++|||+|++|.. +.+.. .++.+| +++| +.|+.|++|+ .+.+++++.++|...
T Consensus 11 ~~~~~WL~YS~~~D~~fC~~C~lF~~~~~~~~~~f~~~Gf~nwk~~~~l~~H--~~s~~H~~a~-~c~~~~~~~~~i~~~ 87 (90)
T smart00597 11 KQFPDWLEYSVEKDKAFCKACYLFRPGRDGDSDLFVTEGFCSWNVERILKQH--EVSKRHRNAF-LCVNLMEQRQLILRA 87 (90)
T ss_pred ccCcchheeecccCcEEEEEEEeeccCCCCCcCcccccCcCcchhhhhHHhh--cCCHHHHhHH-HHHHHHcccccchhh
Confidence 35655999999999999999999952 22221 233344 3578 8999999998 667777777777653
No 3
>KOG1121 consensus Tam3-transposase (Ac family) [Replication, recombination and repair]
Probab=96.21 E-value=1.7 Score=46.71 Aligned_cols=261 Identities=16% Similarity=0.149 Sum_probs=148.0
Q ss_pred HHHhhcCCccccCCCCCCCCCCccHHHHHHHHhhccHHHHHHHHhcCCCCccccCcchHHHHHHHHHHHHHH--HHHhhh
Q 044782 79 RLLLEQGLAFRGHDESDNSSNQGNYLRILRFLADHNEDIKKVTLKNAPGNNMLTAPSIQKDIVRACSIETTN--AIFRDV 156 (427)
Q Consensus 79 ~~l~~q~l~~rg~~~~~~~~n~gnF~~ll~l~~~~d~~l~~~~l~~~~~~~~y~S~~iqneiI~~~~~~i~~--~I~~~i 156 (427)
.++..+|+||.--.+. -|..++..+ +..|.-+..++--..+++....+ .....+
T Consensus 105 ~~ii~~~lp~~~ve~~-------~~~~~~~~~-----------------~P~~~~~~~~t~~~~~~~~~~~~k~~~~~~~ 160 (641)
T KOG1121|consen 105 RMIILHGLPLSTVEEP-------GFRELLKHL-----------------NPNYKLPSRSTLEADVLKIYEAEKPKLKEIL 160 (641)
T ss_pred HHHHhcCCChhhccch-------hHHHHHHhc-----------------CCCcccCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999876543 133332211 11222222222223334433322 222233
Q ss_pred cC--cceEEEecccCCc-ccchhheeeEEEeccCCceeeeeeeccccccccHHHHHHHHHHHHHHcCCCccceEeeeech
Q 044782 157 GD--ALFYVLIDESRDA-SMKEQMSVVLRYVDKNEFVIERFIGLKHVTSTTAISLKEALDQLFSKHGLSISRLRGQEKQL 233 (427)
Q Consensus 157 ~~--~~FSi~~DettDi-s~~eqlsi~vRyv~~~~~i~E~fl~~~~~~~~ta~~l~~~i~~~L~~~~l~~~~~~gq~yd~ 233 (427)
.. +..++.+|-++|. .....+++..+|+|.++..+..+++|.-.+..+++.|+..+..++.+++|. .++...+.|.
T Consensus 161 ~~~~~~v~lT~d~w~~~~~~~~y~~~t~h~id~~~~l~~~il~~~~~~~~~~~~i~~~~~~~~~~~~i~-~kv~~~~~~n 239 (641)
T KOG1121|consen 161 EKIIGRVSLTTDLWSDSGTDEGYMVLTAHYIDRDWELHNKILSFCIPPPHLGKALASVLNECLLEWGIE-KKVFSITVDN 239 (641)
T ss_pred HccCCceEEEEeeecCCCCCcceEEEEEEEeccchHhhhheeeeecCCcchHHHHHHHHHHHHHhhChh-heEEEEeecc
Confidence 33 7899999999998 678888999999999999999999999666799999999999999999986 3332222210
Q ss_pred -------------------------------hhH-----HHHhh--c-----------CCcCCC-------------CCC
Q 044782 234 -------------------------------LSV-----VEALE--N-----------DDLPSG-------------QGQ 251 (427)
Q Consensus 234 -------------------------------~~i-----~~~l~--~-----------~~i~~~-------------~~~ 251 (427)
.++ +..+. . ..+.+. .+.
T Consensus 240 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~C~~~~~~~~v~~~l~~~~~~~l~~ir~~v~~vk~s~~~~~~f~~~~~~~~~ 319 (641)
T KOG1121|consen 240 VNVSNIETLRDHLKSSNALLLLGKFFHVRCFAHILNLIVQEGLKEEFSSLLEKLRESVKYVKSSESRESSFEECQEQLGI 319 (641)
T ss_pred cchhHHHHhhHHHhhcccceecceeeeeehhhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCC
Confidence 000 00010 0 000000 000
Q ss_pred ccccccccccccccchHHHHHHHHHHhhhHHHHHHHHHHhcCCCChhhHhhHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Q 044782 252 NQEITLKRFGDTQWGSHYGTLLHIISLFPHIISVLEIVAKDKSNSSEQRFQANNLIEFMQSFDFVLSLYLMRDILALSNE 331 (427)
Q Consensus 252 ~~~~~L~~~~~TRW~s~~~al~~v~~~~~~i~~~L~~i~~~~~~~~~~~~~A~~ll~~l~~f~fi~~l~~l~~il~~~~~ 331 (427)
.....+. ..++||.+....+.+..+...++.....+= .. ....-.++ + .-.+..+.++|..+..
T Consensus 320 ~~~~~~~-d~~~~w~st~~ml~~~~~~~~~~~~~~~~~---~~-~~~~~~~~----------~-~~~~~~l~~~l~~~~~ 383 (641)
T KOG1121|consen 320 PSDVLLL-DVSTRWNSTYLMLSRALKLKDAFSKLEEED---KS-YKSYPSDE----------E-WNRLEELCDFLQPFSE 383 (641)
T ss_pred ccccccc-cCCccchhHHHHHHHHHHHHHHHHHHHHhc---cc-cccCcCHH----------H-HHHHHHHHHHHHHHHH
Confidence 0001222 378899999988888877777666655442 11 11000011 1 2234455667777777
Q ss_pred HHHHHhhccccHH-HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHcC
Q 044782 332 LSQALQRKDQDIL-NAIKLVEICKKNLQMMRDNGWDSLLSEASSFCLKHD 380 (427)
Q Consensus 332 ls~~LQ~~~~dl~-~a~~~I~~~~~~L~~~R~~~f~~~~~~a~~~a~~~~ 380 (427)
.+..++...--.. .....|-.+...+.......-+.+...|..+.++.+
T Consensus 384 ~~~~~s~~~~~ts~~~~~~i~~i~~~l~~~~~~~~~~~~~~a~~m~~k~d 433 (641)
T KOG1121|consen 384 VTKLLSGSSYPTSNQYFPEIWKIENLLKTYASGEDEVVRSMAEEMFEKFD 433 (641)
T ss_pred HHHHhcCCCCchHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHhh
Confidence 7778877666555 444555555555555443323344555555555543
No 4
>PF04937 DUF659: Protein of unknown function (DUF 659); InterPro: IPR007021 These are transposase-like proteins with no known function.
Probab=89.35 E-value=1.5 Score=37.97 Aligned_cols=67 Identities=16% Similarity=0.135 Sum_probs=49.7
Q ss_pred cceEEEecccCCcccchhheeeEEEeccCCceeeeeeecccccc--ccHHHHHHHHHHHHHHcCCCccceEeeeec
Q 044782 159 ALFYVLIDESRDASMKEQMSVVLRYVDKNEFVIERFIGLKHVTS--TTAISLKEALDQLFSKHGLSISRLRGQEKQ 232 (427)
Q Consensus 159 ~~FSi~~DettDis~~eqlsi~vRyv~~~~~i~E~fl~~~~~~~--~ta~~l~~~i~~~L~~~~l~~~~~~gq~yd 232 (427)
.-.||++|+++|..+..-+.++|..- .+ .-|+.-++..+ .||+.|++.+.+.+++.|- .|++..-.|
T Consensus 32 ~Gcsi~~DgWtd~~~~~lInf~v~~~--~g---~~Flksvd~s~~~~~a~~l~~ll~~vIeeVG~--~nVvqVVTD 100 (153)
T PF04937_consen 32 TGCSIMSDGWTDRKGRSLINFMVYCP--EG---TVFLKSVDASSIIKTAEYLFELLDEVIEEVGE--ENVVQVVTD 100 (153)
T ss_pred cCEEEEEecCcCCCCCeEEEEEEEcc--cc---cEEEEEEecccccccHHHHHHHHHHHHHHhhh--hhhhHHhcc
Confidence 45899999999998887777666332 22 45777777764 7999999999999999874 455544333
No 5
>PF06220 zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type zinc finger motif found in several U1 small nuclear ribonucleoprotein C (U1-C) proteins. Some proteins contain multiple copies of this motif. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' splice site is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' splice site. Binding of TIA-1 in the vicinity of a 5' splice site helps to stabilise U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2VRD_A.
Probab=68.15 E-value=0.96 Score=29.26 Aligned_cols=33 Identities=15% Similarity=0.055 Sum_probs=17.3
Q ss_pred ccccccccCC-CCCCCCCCCCCCCCCCCCCCChhHHHHHHHH
Q 044782 17 KFDLELSELP-SDPRQRPPISSYNPNHVGGPNSAHNKAVGYC 57 (427)
Q Consensus 17 ~fC~~C~~~~-~~~~~~~~~~~~~~~H~~e~s~~H~~a~~~~ 57 (427)
-||-+|.-+. .+.. .--+.| +.+..|+.+++.+
T Consensus 4 yyCdyC~~~~~~d~~------~~Rk~H--~~G~kH~~nv~~~ 37 (38)
T PF06220_consen 4 YYCDYCKKYLTHDSP------SIRKQH--ERGWKHKENVKRY 37 (38)
T ss_dssp -B-TTT--B-S--SH------HHHHHH--T--THHHHHHHHH
T ss_pred eecccccceecCCCh------HHHHHh--hccHHHHHHHHHh
Confidence 4899996665 3331 111689 9999999999875
No 6
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=56.21 E-value=4.3 Score=40.98 Aligned_cols=36 Identities=17% Similarity=0.207 Sum_probs=28.7
Q ss_pred cccccc-ccCCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHhc
Q 044782 17 KFDLEL-SELPSDPRQRPPISSYNPNHVGGPNSAHNKAVGYCEDLMK 62 (427)
Q Consensus 17 ~fC~~C-~~~~~~~~~~~~~~~~~~~H~~e~s~~H~~a~~~~~~~~~ 62 (427)
+||++| +-|.+... .+.| |+|+.|+..|..+..-++
T Consensus 293 lyC~vCnKsFKseKq--------~kNH--EnSKKHkenv~eLrqemE 329 (508)
T KOG0717|consen 293 LYCVVCNKSFKSEKQ--------LKNH--ENSKKHKENVAELRQEME 329 (508)
T ss_pred eEEeeccccccchHH--------HHhh--HHHHHHHHHHHHHHHHHH
Confidence 899999 77776553 3789 999999999998775543
No 7
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=46.08 E-value=1.5e+02 Score=26.28 Aligned_cols=51 Identities=16% Similarity=0.180 Sum_probs=33.6
Q ss_pred hhHHHHHHHHHHHHHH--HHHHHHHHhhccccHHHHHHHHHHHHHHHHHHhhh
Q 044782 313 FDFVLSLYLMRDILAL--SNELSQALQRKDQDILNAIKLVEICKKNLQMMRDN 363 (427)
Q Consensus 313 f~fi~~l~~l~~il~~--~~~ls~~LQ~~~~dl~~a~~~I~~~~~~L~~~R~~ 363 (427)
|.+++.+.++.-+|.. ..|+...|+.+.-.+...++..+......+.++.+
T Consensus 35 ~~~lI~F~iL~~ll~k~l~~PI~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e 87 (181)
T PRK13454 35 FWLLVTLVAIYFVLTRVALPRIGAVLAERQGTITNDLAAAEELKQKAVEAEKA 87 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3444455555555544 46889999988888877777777776666665543
No 8
>KOG0150 consensus Spliceosomal protein FBP21 [RNA processing and modification]
Probab=34.24 E-value=14 Score=35.32 Aligned_cols=41 Identities=15% Similarity=-0.071 Sum_probs=30.2
Q ss_pred cCcCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHH
Q 044782 10 SGPEKRNKFDLELSELPSDPRQRPPISSYNPNHVGGPNSAHNKAVGYCE 58 (427)
Q Consensus 10 ys~~~~~~fC~~C~~~~~~~~~~~~~~~~~~~H~~e~s~~H~~a~~~~~ 58 (427)
|=++...-||-+|+.+..++. . --.-| |....|+.++.+-.
T Consensus 4 YWkS~~kkfCdyCKiWi~dN~----~--Sv~~H--e~GkrHke~V~Kri 44 (336)
T KOG0150|consen 4 YWKSQPKKFCDYCKIWIKDNP----A--SVRFH--ERGKRHKENVAKRI 44 (336)
T ss_pred hhhhccchhhhhhhhhhcCCh----H--HHHhH--hhhhHHHHHHHHHH
Confidence 456778889999988776652 1 12468 99999999998743
No 9
>cd01648 TERT TERT: Telomerase reverse transcriptase (TERT). Telomerase is a ribonucleoprotein (RNP) that synthesizes telomeric DNA repeats. The telomerase RNA subunit provides the template for synthesis of these repeats. The catalytic subunit of RNP is known as telomerase reverse transcriptase (TERT). The reverse transcriptase (RT) domain is located in the C-terminal region of the TERT polypeptide. Single amino acid substitutions in this region lead to telomere shortening and senescence. Telomerase is an enzyme that, in certain cells, maintains the physical ends of chromosomes (telomeres) during replication. In somatic cells, replication of the lagging strand requires the continual presence of an RNA primer approximately 200 nucleotides upstream, which is complementary to the template strand. Since there is a region of DNA less than 200 base pairs from the end of the chromosome where this is not possible, the chromosome is continually shortened. However, a surplus of repetitive DNA at
Probab=32.76 E-value=90 Score=25.42 Aligned_cols=40 Identities=23% Similarity=0.223 Sum_probs=26.9
Q ss_pred heeeEEEeccCCceeeeeeeccccccccHHHHHHHHHHHH-HHcCCCcc
Q 044782 177 MSVVLRYVDKNEFVIERFIGLKHVTSTTAISLKEALDQLF-SKHGLSIS 224 (427)
Q Consensus 177 lsi~vRyv~~~~~i~E~fl~~~~~~~~ta~~l~~~i~~~L-~~~~l~~~ 224 (427)
-..++||+|+- +-+ .-...+++...+.+...+ ++.|+.++
T Consensus 52 ~~~~~rYaDD~-------li~-~~~~~~~~~~~~~l~~~l~~~~gl~iN 92 (119)
T cd01648 52 DSLLLRLVDDF-------LLI-TTSLDKAIKFLNLLLRGFINQYKTFVN 92 (119)
T ss_pred CceEEEEeCcE-------EEE-eCCHHHHHHHHHHHHHhhHHhhCeEEC
Confidence 35679999851 111 112467788888888888 88888654
No 10
>PHA02604 rI.-1 hypothetical protein; Provisional
Probab=29.81 E-value=2.4e+02 Score=23.43 Aligned_cols=25 Identities=8% Similarity=0.010 Sum_probs=21.8
Q ss_pred chHHHHHHHHHHhhhHHHHHHHHHH
Q 044782 266 GSHYGTLLHIISLFPHIISVLEIVA 290 (427)
Q Consensus 266 ~s~~~al~~v~~~~~~i~~~L~~i~ 290 (427)
=++++|...+.+..+.+++.+.|.-
T Consensus 39 Ya~HkA~d~~y~~~~dLiD~F~E~y 63 (126)
T PHA02604 39 YARHKAYEFFYEEMPDLIDKFAEQY 63 (126)
T ss_pred HhhhhHHHHHHHHhhHHHHHHHHHH
Confidence 3679999999999999999998753
No 11
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=25.10 E-value=14 Score=22.68 Aligned_cols=32 Identities=19% Similarity=0.014 Sum_probs=21.5
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCCCCCCChhHHHHHHH
Q 044782 16 NKFDLELSELPSDPRQRPPISSYNPNHVGGPNSAHNKAVGY 56 (427)
Q Consensus 16 ~~fC~~C~~~~~~~~~~~~~~~~~~~H~~e~s~~H~~a~~~ 56 (427)
.-||-.|.....+.. .+ +.| -.+..|+.++..
T Consensus 3 ~~~C~~C~~~~~~~~------~~-~~H--~~gk~H~~~~~~ 34 (35)
T smart00451 3 GFYCKLCNVTFTDEI------SV-EAH--LKGKKHKKNVKK 34 (35)
T ss_pred CeEccccCCccCCHH------HH-HHH--HChHHHHHHHHc
Confidence 468888955443331 33 688 789999888754
No 12
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=22.36 E-value=5e+02 Score=22.29 Aligned_cols=47 Identities=21% Similarity=0.353 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHhh
Q 044782 314 DFVLSLYLMRDILALSNELSQALQRKDQDILNAIKLVEICKKNLQMMRD 362 (427)
Q Consensus 314 ~fi~~l~~l~~il~~~~~ls~~LQ~~~~dl~~a~~~I~~~~~~L~~~R~ 362 (427)
.|++.+.++...+ ..|+...|+...-.+.......+...........
T Consensus 17 ~Flil~~ll~~~l--~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~ 63 (164)
T PRK14471 17 LFLILLLLLAKFA--WKPILGAVKEREDSIKNALASAEEARKEMQNLQA 63 (164)
T ss_pred HHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555554444 4678888888877777766666666666555544
No 13
>PF14698 ASL_C2: Argininosuccinate lyase C-terminal; PDB: 1XWO_A 2E9F_A 1TJW_C 1TJU_A 1DCN_B 1K7W_B 1HY1_C 1TJV_B 1AUW_A 1U15_B ....
Probab=21.79 E-value=35 Score=25.21 Aligned_cols=13 Identities=31% Similarity=0.698 Sum_probs=9.4
Q ss_pred HHHhhcCCccccC
Q 044782 79 RLLLEQGLAFRGH 91 (427)
Q Consensus 79 ~~l~~q~l~~rg~ 91 (427)
=+|.++|+|||..
T Consensus 9 D~LVr~GipFR~A 21 (70)
T PF14698_consen 9 DYLVRKGIPFREA 21 (70)
T ss_dssp HHHHHTTS-HHHH
T ss_pred HHHHHcCCCHHHH
Confidence 3677889999984
No 14
>PF15469 Sec5: Exocyst complex component Sec5
Probab=20.83 E-value=5.7e+02 Score=22.32 Aligned_cols=70 Identities=19% Similarity=0.251 Sum_probs=48.6
Q ss_pred HhhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHh-hh-hHHHHHHHHHHHHH
Q 044782 300 RFQANNLIEFMQSFDFVLSLYLMRDILALSNELSQALQRKDQDILNAIKLVEICKKNLQMMR-DN-GWDSLLSEASSFCL 377 (427)
Q Consensus 300 ~~~A~~ll~~l~~f~fi~~l~~l~~il~~~~~ls~~LQ~~~~dl~~a~~~I~~~~~~L~~~R-~~-~f~~~~~~a~~~a~ 377 (427)
....++.+..+..+.|+|.|- ..+.+.++.. |...++.....++..+...+ .. -|..+|.++....+
T Consensus 70 ~~~l~~~l~~l~r~~flF~LP---------~~L~~~i~~~--dy~~~i~dY~kak~l~~~~~~~~~vf~~v~~eve~ii~ 138 (182)
T PF15469_consen 70 ADKLRNALEFLQRNRFLFNLP---------SNLRECIKKG--DYDQAINDYKKAKSLFEKYKQQVPVFQKVWSEVEKIIE 138 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHhH---------HHHHHHHHcC--cHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 345566667777777777663 2444555544 56667888888888888886 33 69999999988886
Q ss_pred HcC
Q 044782 378 KHD 380 (427)
Q Consensus 378 ~~~ 380 (427)
.+-
T Consensus 139 ~~r 141 (182)
T PF15469_consen 139 EFR 141 (182)
T ss_pred HHH
Confidence 553
Done!