Query 044782
Match_columns 427
No_of_seqs 241 out of 1355
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 11:30:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044782.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044782hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bw3_A Transposase; DNA recomb 99.6 4.6E-15 1.6E-19 154.0 19.5 197 79-288 25-267 (534)
2 3cw1_L U1 small nuclear ribonu 56.0 2.7 9.3E-05 30.7 0.3 35 17-59 4-39 (77)
3 3d6r_B NS1, NS1A, non-structur 29.0 80 0.0027 25.1 4.7 52 159-217 60-111 (158)
4 3rvc_A NS1, NS1A, non-structur 23.6 1.2E+02 0.004 23.9 4.8 51 159-216 54-104 (152)
5 3f5t_A NS1, nonstructural prot 19.3 1.5E+02 0.005 24.6 4.7 51 159-216 127-177 (215)
6 1zr9_A Zinc finger protein 593 17.0 16 0.00054 29.3 -1.5 34 15-58 49-83 (124)
7 3eu6_A NS1, nonstructural prot 16.1 1.9E+02 0.0066 24.0 4.7 51 159-216 127-177 (215)
8 1v54_E Cytochrome C oxidase po 14.3 2E+02 0.0069 22.1 4.1 45 339-384 57-101 (109)
9 2hzq_A Apolipoprotein D, APO-D 12.6 3.7E+02 0.013 21.8 6.0 53 176-228 105-157 (174)
10 1q02_A Sequestosome 1; helical 11.8 1.3E+02 0.0045 19.9 2.1 21 331-351 28-48 (52)
No 1
>2bw3_A Transposase; DNA recombination, transposition; 2.0A {Musca domestica} SCOP: a.270.1.1 c.55.3.12 PDB: 2bw3_B
Probab=99.64 E-value=4.6e-15 Score=153.96 Aligned_cols=197 Identities=16% Similarity=0.255 Sum_probs=143.7
Q ss_pred HHHhhcCCccccCCCCCCCCCCccHHHHHHHHhhccHHHHHHHHhcCCCCccccC-cchHHHHHHHHHHHHHHHHHhhhc
Q 044782 79 RLLLEQGLAFRGHDESDNSSNQGNYLRILRFLADHNEDIKKVTLKNAPGNNMLTA-PSIQKDIVRACSIETTNAIFRDVG 157 (427)
Q Consensus 79 ~~l~~q~l~~rg~~~~~~~~n~gnF~~ll~l~~~~d~~l~~~~l~~~~~~~~y~S-~~iqneiI~~~~~~i~~~I~~~i~ 157 (427)
.+++++|+||+.-+ .++|+++++.+...+|.+.++ +.. +....| ++++..+++ +...+++.+.++++
T Consensus 25 ~~i~~~~~Pf~~ve-------~~~F~~~l~~l~~~~p~~~~~-~~~---~~~~ps~~~~~~~i~~-~~~~~~~~l~~~l~ 92 (534)
T 2bw3_A 25 QWVVRDCRPFSAVS-------GSGFIDMIKFFIKVKAEYGEH-VNV---EELLPSPITLSRKVTS-DAKEKKALIGREIK 92 (534)
T ss_dssp HHHHHTTCCGGGGG-------CHHHHHHHHHHHHHHHHHCSC-BCH---HHHSCCHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHhcCCcchhhC-------CHHHHHHHHHHHhhhhhhccc-cch---hhcCCCcccHHHHHHH-HHHHHHHHHHHHHH
Confidence 89999999999864 368999999988777754321 000 001122 344455444 68888889999987
Q ss_pred C----cceEEEecccCCc-ccchhheeeEEEeccCCceeeeeeeccccc--cccHHHHHHHHHHHHHHcCCCccceEeee
Q 044782 158 D----ALFYVLIDESRDA-SMKEQMSVVLRYVDKNEFVIERFIGLKHVT--STTAISLKEALDQLFSKHGLSISRLRGQE 230 (427)
Q Consensus 158 ~----~~FSi~~DettDi-s~~eqlsi~vRyv~~~~~i~E~fl~~~~~~--~~ta~~l~~~i~~~L~~~~l~~~~~~gq~ 230 (427)
. +.|||++|++||. .+.++|+|++||+ +++.+++++|+|.+++ ++||+.|++.|.++|+++||+..++++..
T Consensus 93 ~~~~~~~~sl~~D~wt~~~~~~~~l~i~v~~i-~~~~~~~~~L~~~~~~~~~~t~~~i~~~i~~~l~~~~l~~~~~v~~v 171 (534)
T 2bw3_A 93 SAVEKDGASATIDLWTDNYIKRNFLGVTLHYH-ENNELRDLILGLKSLDFERSTAENIYKKLKAIFSQFNVEDLSSIKFV 171 (534)
T ss_dssp HHHHTTCCEEEEEEEEETTTTEEEEEEEEEEE-ETTEEEEEEEEEEEECGGGCSHHHHHHHHHHHHHTTTCCCCTTCEEE
T ss_pred hhhcCCceEEEEecccCCCCCcceeEEEEEEe-eCCceEEEEEeEeecCCCCCCHHHHHHHHHHHHHHcCCCcccceeEE
Confidence 5 6899999999999 4899999999999 4788999999999998 59999999999999999999865565555
Q ss_pred ech-----------------hhHHHHh-----hc---------------CCcC-CCCCCccccccccccccccchHHHHH
Q 044782 231 KQL-----------------LSVVEAL-----EN---------------DDLP-SGQGQNQEITLKRFGDTQWGSHYGTL 272 (427)
Q Consensus 231 yd~-----------------~~i~~~l-----~~---------------~~i~-~~~~~~~~~~L~~~~~TRW~s~~~al 272 (427)
.|. ++..+++ .. ..+. +.........|...++|||.+.+.++
T Consensus 172 tDnasn~~~~~~~~~~i~C~~H~lnLi~~~~l~~~~~~~~~l~~~~~iv~~i~~s~~~~~l~~~l~~~~~tRW~S~~~~L 251 (534)
T 2bw3_A 172 TDRGANVVKSLANNIRINCSSHLLSNVLENSFEETPELNMPILACKNIVKYFKKANLQHRLRSSLKSECPTRWNSTYTML 251 (534)
T ss_dssp ECCCHHHHHHTTTSEEEECHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCGGGGCCCCCCSSCGGGCHHHHHH
T ss_pred CCCHHHHHHHHhcCcccccHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhccHhhHhcccccCCCCCCCcHhHHHHH
Confidence 562 1111111 00 0000 00000112467888999999999999
Q ss_pred HHHHHhhhHHHHHHHH
Q 044782 273 LHIISLFPHIISVLEI 288 (427)
Q Consensus 273 ~~v~~~~~~i~~~L~~ 288 (427)
.++++.+++|...+.+
T Consensus 252 ~~~l~~~~~i~~~~~~ 267 (534)
T 2bw3_A 252 RSILDNWESVIQILSE 267 (534)
T ss_dssp HHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999988865
No 2
>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, finger, RNA recognition motif, 5' splice site; 5.49A {Homo sapiens} PDB: 1uw2_A 2vrd_A
Probab=55.97 E-value=2.7 Score=30.70 Aligned_cols=35 Identities=14% Similarity=-0.009 Sum_probs=24.8
Q ss_pred ccccccccCC-CCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHH
Q 044782 17 KFDLELSELP-SDPRQRPPISSYNPNHVGGPNSAHNKAVGYCED 59 (427)
Q Consensus 17 ~fC~~C~~~~-~~~~~~~~~~~~~~~H~~e~s~~H~~a~~~~~~ 59 (427)
-||-+|.-+. .+.- .--+.| +++..|+.+++.+-.
T Consensus 4 YyCdYCd~~lt~Ds~------s~Rk~H--~~G~kH~~nv~~yy~ 39 (77)
T 3cw1_L 4 FYCDYCDTYLTHDSP------SVRKTH--CSGRKHKENVKDYYC 39 (77)
T ss_pred cccccCCceecCCCH------HHHHHH--HccHHHHHHHHHHHH
Confidence 4899997665 3320 112689 999999999998654
No 3
>3d6r_B NS1, NS1A, non-structural protein 1; effector domain, alternative splicing, cytoplasm, HOST-virus interaction; 2.00A {Influenza a virus} PDB: 3oa9_A
Probab=29.02 E-value=80 Score=25.06 Aligned_cols=52 Identities=23% Similarity=0.321 Sum_probs=40.2
Q ss_pred cceEEEecccCCcccchhheeeEEEeccCCceeeeeeeccccccccHHHHHHHHHHHHH
Q 044782 159 ALFYVLIDESRDASMKEQMSVVLRYVDKNEFVIERFIGLKHVTSTTAISLKEALDQLFS 217 (427)
Q Consensus 159 ~~FSi~~DettDis~~eqlsi~vRyv~~~~~i~E~fl~~~~~~~~ta~~l~~~i~~~L~ 217 (427)
..|||+.|-. |- -+.+|-+.++|.|.-+.--+..++.+|.|++.++|--.+.
T Consensus 60 ANfsVifdrl------et-lilLRAFTeegaivgEIsplpslPGHt~EdVKnAigvlIg 111 (158)
T 3d6r_B 60 ANFSVLFDQL------ET-LVSLRAFTDDGAIVAEISPIPSMPGHSTEDVKNAIGILIG 111 (158)
T ss_dssp EEEEEETTEE------EE-EEEEEEEETTSCEEEEEEECTTSCCCCHHHHHHHHHHHHH
T ss_pred eeeeeehhHH------HH-HHHHHHhccCCceEEeeccCCCCCCCchHHHHhhHhheec
Confidence 4688888743 22 4677888888888877778888899999999999866663
No 4
>3rvc_A NS1, NS1A, non-structural protein 1; interferon antagonist, protein binding; 1.80A {Influenza a virus} PDB: 3o9q_A 3o9r_A 3l4q_A 3o9t_A* 3o9s_A* 3o9u_B 2gx9_A 3p38_A 3p39_A 3p31_A 2kkz_A 2rhk_A 3kwg_A 3kwi_A 3m5r_A 3ee9_A 3ee8_A
Probab=23.64 E-value=1.2e+02 Score=23.85 Aligned_cols=51 Identities=25% Similarity=0.339 Sum_probs=39.7
Q ss_pred cceEEEecccCCcccchhheeeEEEeccCCceeeeeeeccccccccHHHHHHHHHHHH
Q 044782 159 ALFYVLIDESRDASMKEQMSVVLRYVDKNEFVIERFIGLKHVTSTTAISLKEALDQLF 216 (427)
Q Consensus 159 ~~FSi~~DettDis~~eqlsi~vRyv~~~~~i~E~fl~~~~~~~~ta~~l~~~i~~~L 216 (427)
..|||+.|-. |- -+.+|-+.++|.|.-+.--+..++.+|.|++.++|--.+
T Consensus 54 ANFSV~f~rL------et-lilLRAfteegaivgeisplpslpght~edvknaigvli 104 (152)
T 3rvc_A 54 ANFSVIFDRL------ET-LILLRAFTEEGAIVGEISPLPSLPGHTAEDVKNAVGVLI 104 (152)
T ss_dssp EEEEEETTEE------EE-EEEEEEEETTSCEEEEEEECTTCCCCCHHHHHHHHHHHH
T ss_pred eeehhhhhHH------HH-HHHHHHhccCCceEEeeccCCCCCCCchHHHHHhHhhee
Confidence 5688888743 22 356788877888888888888889999999999986665
No 5
>3f5t_A NS1, nonstructural protein 1; H5N1, HOST-virus interaction, interferon ANT system evasion, nucleus, RNA-binding; 2.70A {Influenza virus}
Probab=19.27 E-value=1.5e+02 Score=24.59 Aligned_cols=51 Identities=24% Similarity=0.333 Sum_probs=39.1
Q ss_pred cceEEEecccCCcccchhheeeEEEeccCCceeeeeeeccccccccHHHHHHHHHHHH
Q 044782 159 ALFYVLIDESRDASMKEQMSVVLRYVDKNEFVIERFIGLKHVTSTTAISLKEALDQLF 216 (427)
Q Consensus 159 ~~FSi~~DettDis~~eqlsi~vRyv~~~~~i~E~fl~~~~~~~~ta~~l~~~i~~~L 216 (427)
..|||+.|-. |- -|.+|-+.++|.|.-+.--+..++.+|.|++.++|--.+
T Consensus 127 anfsvif~rl------et-lillrafteegaivgeisplpslpght~edvknaigvli 177 (215)
T 3f5t_A 127 ANFSVIFDRL------ET-LILLRAFTEEGAIVGEISPLPSLPGHTGEDVKNAIGVLI 177 (215)
T ss_dssp EEEEEETTEE------EE-EEEEEEEETTCCEEEEEEECCCSSCCCHHHHHHHHHHHH
T ss_pred eeeeehhhhH------HH-HHHHHHhccCCceEEeecCCCCCCCCchHHHHHhHHhee
Confidence 4678877743 22 467788888888887777788888999999999986665
No 6
>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4
Probab=16.98 E-value=16 Score=29.30 Aligned_cols=34 Identities=12% Similarity=-0.061 Sum_probs=24.7
Q ss_pred CCcccccc-ccCCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHH
Q 044782 15 RNKFDLEL-SELPSDPRQRPPISSYNPNHVGGPNSAHNKAVGYCE 58 (427)
Q Consensus 15 ~~~fC~~C-~~~~~~~~~~~~~~~~~~~H~~e~s~~H~~a~~~~~ 58 (427)
..-+|..| +.|.+.. -+..| ..|+.|+..+..+.
T Consensus 49 kpfyC~~C~K~F~~~~--------~L~~H--~rsK~HKrrvk~l~ 83 (124)
T 1zr9_A 49 GLHRCLACARYFIDST--------NLKTH--FRSKDHKKRLKQLS 83 (124)
T ss_dssp GCSEETTTTEECSSHH--------HHHHH--TTCHHHHHHHHHHT
T ss_pred cceEcccCcchhCCHH--------HHHHH--HhhhhhhHHHHHhc
Confidence 34588888 5565443 34689 89999999988864
No 7
>3eu6_A NS1, nonstructural protein 1; H5N1, cytoplasm, HOST-virus interaction, interferon antiviral system evasion, nucleus, RNA-binding; 2.70A {Influenza virus} PDB: 3f5t_A
Probab=16.13 E-value=1.9e+02 Score=24.01 Aligned_cols=51 Identities=24% Similarity=0.333 Sum_probs=38.3
Q ss_pred cceEEEecccCCcccchhheeeEEEeccCCceeeeeeeccccccccHHHHHHHHHHHH
Q 044782 159 ALFYVLIDESRDASMKEQMSVVLRYVDKNEFVIERFIGLKHVTSTTAISLKEALDQLF 216 (427)
Q Consensus 159 ~~FSi~~DettDis~~eqlsi~vRyv~~~~~i~E~fl~~~~~~~~ta~~l~~~i~~~L 216 (427)
..|||+.|-. |- -+.+|-+.+++.|.-+.--+..++.+|.|++.++|--.+
T Consensus 127 anfsv~f~rl------et-lillrafteegaivgeisplpslpght~edvknaigvli 177 (215)
T 3eu6_A 127 ANFSVIFDRL------ET-LILLRAFTEEGAIVGEISPLPSLPGHTGEDVKNAIGVLI 177 (215)
T ss_dssp EEEEEETTEE------EE-EEEEEEEETTCCEEEEEEECCCSSCCCHHHHHHHHHHHH
T ss_pred echhhhhhHH------HH-HHHHHHhccCCceEEeeccCCCCCCCchHHHHHhHhhee
Confidence 4577776642 22 356787777888888888888889999999999986665
No 8
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=14.27 E-value=2e+02 Score=22.12 Aligned_cols=45 Identities=16% Similarity=0.250 Sum_probs=34.7
Q ss_pred ccccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCCCC
Q 044782 339 KDQDILNAIKLVEICKKNLQMMRDNGWDSLLSEASSFCLKHDIDVP 384 (427)
Q Consensus 339 ~~~dl~~a~~~I~~~~~~L~~~R~~~f~~~~~~a~~~a~~~~i~~p 384 (427)
.--|+..|+..+++++.+.... .+-|.-+.++.+-.-+++||+.|
T Consensus 57 RvND~alAVR~lE~iK~K~~~~-~~iY~~~lqElkPtl~ELGI~t~ 101 (109)
T 1v54_E 57 RLNDFASAVRILEVVKDKAGPH-KEIYPYVIQELRPTLNELGISTP 101 (109)
T ss_dssp HTTCHHHHHHHHHHHHHHTTTC-TTHHHHHHHHHHHHHHHHTCCCT
T ss_pred HhhhHHHHHHHHHHHHHHhcCc-hhhHHHHHHHHhhHHHHhCCCCH
Confidence 3457888999999888766433 22488899999999999999864
No 9
>2hzq_A Apolipoprotein D, APO-D, APOD; lipocalin, beta barrel, bilin-binding protein, transport protein; HET: STR; 1.80A {Homo sapiens} PDB: 2hzr_A
Probab=12.55 E-value=3.7e+02 Score=21.80 Aligned_cols=53 Identities=6% Similarity=0.123 Sum_probs=32.4
Q ss_pred hheeeEEEeccCCceeeeeeeccccccccHHHHHHHHHHHHHHcCCCccceEe
Q 044782 176 QMSVVLRYVDKNEFVIERFIGLKHVTSTTAISLKEALDQLFSKHGLSISRLRG 228 (427)
Q Consensus 176 qlsi~vRyv~~~~~i~E~fl~~~~~~~~ta~~l~~~i~~~L~~~~l~~~~~~g 228 (427)
+.+|+.+.....+.....++-++.=...-.+.+.+.+.+.+++.|++.++++-
T Consensus 105 ~yAiv~~~~~~~~~~~~~~~~ilsR~~~~~~~~~~~~~~~~~~~G~~~~~l~~ 157 (174)
T 2hzq_A 105 NYALVYSCTSISQSFHVDFAWILARNVALPPETVDSLKNILTSNNIDVKKMTV 157 (174)
T ss_dssp SEEEEEEEEESSTTEEEEEEEEEESSSCCCHHHHHHHHHHHHHTTCCCTTCEE
T ss_pred CEEEEEecccCCCcccceEEEEEECCCCCCHHHHHHHHHHHHHcCCCHHHeEE
Confidence 56666666543233344444444433232345677889999999999988753
No 10
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=11.83 E-value=1.3e+02 Score=19.88 Aligned_cols=21 Identities=33% Similarity=0.397 Sum_probs=17.3
Q ss_pred HHHHHHhhccccHHHHHHHHH
Q 044782 331 ELSQALQRKDQDILNAIKLVE 351 (427)
Q Consensus 331 ~ls~~LQ~~~~dl~~a~~~I~ 351 (427)
.|++.|++++=||..|++.++
T Consensus 28 WLt~LL~~k~gDI~~aLD~lq 48 (52)
T 1q02_A 28 WLTRLLQTKNYDIGAALDTIQ 48 (52)
T ss_dssp HHHHHHHHTTTCHHHHHHHHT
T ss_pred HHHHHHHHccCCHHHHHHHhh
Confidence 457789999999999988765
Done!