BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044784
(482 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3S1E|A Chain A, Pro427gln Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With N6-Isopentenyladenine
Length = 516
Score = 432 bits (1112), Expect = e-121, Method: Compositional matrix adjust.
Identities = 234/493 (47%), Positives = 314/493 (63%), Gaps = 24/493 (4%)
Query: 8 LRTDPGAIKLASIDYGHIIKEKPFAVLYPTSVDDIRTLIYLSYNSL-FSYTIAAKGQAHS 66
LRTD A AS D+G+I P AVLYP+S D+ L+ + ++ + YTIA +G+ HS
Sbjct: 29 LRTDSNATAAASTDFGNITSALPAAVLYPSSTADLVALLSAANSTPGWPYTIAFRGRGHS 88
Query: 67 TWGQAQANDGVVVQMNSLNRFRNGTGILISGDRSSGFYADVGGEQLWIDVLNATLTRGLS 126
GQA A GVVV M SL I +S D G Y D GGEQ+WIDVL A+L RG++
Sbjct: 89 LMGQAFAPGGVVVNMASLGDAAAPPRINVSAD---GRYVDAGGEQVWIDVLRASLARGVA 145
Query: 127 PVSWTDYLYPTVGGTLSNAGISGHTYQKGPQITNVLELDVLTGKGEFVTCSPQKDSELFY 186
P SWTDYLY TVGGTLSNAGISG ++ GPQI+NVLE+DV+TG GE VTCS Q +++LF
Sbjct: 146 PRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFD 205
Query: 187 AVLGGLGQFGIITRARIVLGPAKKRVKWLRILYSDFSSFSTDQETLISTT--GPSDKVMP 244
AVLGGLGQFG+ITRARI + PA R +W+R++Y+DF++FS DQE L + G P
Sbjct: 206 AVLGGLGQFGVITRARIAVEPAPARARWVRLVYTDFAAFSADQERLTAPRPGGGGASFGP 265
Query: 245 -DFLEGHLLMNQS------PLDFYPQSQRRKITFLVNQYG--ILYIIEVVTYYDN-KNEA 294
++EG + +NQS F+ + +I L + +Y IE YDN A
Sbjct: 266 MSYVEGSVFVNQSLATDLANTGFFTDADVARIVALAGERNATTVYSIEATLNYDNATAAA 325
Query: 295 KKVKQMLKSLKG---FLPGFVFEKDVTYLQFLNRVHDQEIELRKKGLWDIPHPWLNIFIP 351
V Q L S+ G ++ GF F++DV Y FL+RVH +E+ L K GLW +PHPWLN+F+P
Sbjct: 326 AAVDQELASVLGTLSYVEGFAFQRDVAYAAFLDRVHGEEVALNKLGLWRVPHPWLNMFVP 385
Query: 352 KSRITDFDNGVFRNILLKRNFTSSTVLVYPLLRSKWDERMSAVIAAEEEVFYFVGFLDAS 411
+SRI DFD GVF+ IL + ++VYPL +S WD+ MSA + E+VFY V L +S
Sbjct: 386 RSRIADFDRGVFKGILQGTDIVGQ-LIVYPLNKSMWDDGMSAATPS-EDVFYAVSLLFSS 443
Query: 412 A--DNWEAFDNKNKDILQFCVNAGIKFKQYLGHHATKEEWIIHFG-SKWNTFQQRKTRFD 468
++ +N+ IL+FC AGI++K YL H + +W+ HFG +KWN F + K ++D
Sbjct: 444 VAPNDLARLQEQNRRILRFCDLAGIQYKTYLARHTDRSDWVRHFGAAKWNRFVEMKNKYD 503
Query: 469 PRMILSPGQRIFN 481
P+ +LSPGQ IFN
Sbjct: 504 PKRLLSPGQDIFN 516
>pdb|2QKN|A Chain A, Crystal Structure Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With Phenylurea Inhibitor Cppu
pdb|3BW7|A Chain A, Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED WITH THE
ALLENIC Cytokinin Analog Ha-1
pdb|3C0P|A Chain A, Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED WITH THE
ALLENIC Cytokinin Analog Ha-8
pdb|3DQ0|A Chain A, Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED WITH
N6-(3-Methoxy- Phenyl)adenine
pdb|3S1C|A Chain A, Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED WITH N6-
Isopentenyladenosine
Length = 516
Score = 432 bits (1112), Expect = e-121, Method: Compositional matrix adjust.
Identities = 234/493 (47%), Positives = 314/493 (63%), Gaps = 24/493 (4%)
Query: 8 LRTDPGAIKLASIDYGHIIKEKPFAVLYPTSVDDIRTLIYLSYNSL-FSYTIAAKGQAHS 66
LRTD A AS D+G+I P AVLYP+S D+ L+ + ++ + YTIA +G+ HS
Sbjct: 29 LRTDSNATAAASTDFGNITSALPAAVLYPSSTADLVALLSAANSTPGWPYTIAFRGRGHS 88
Query: 67 TWGQAQANDGVVVQMNSLNRFRNGTGILISGDRSSGFYADVGGEQLWIDVLNATLTRGLS 126
GQA A GVVV M SL I +S D G Y D GGEQ+WIDVL A+L RG++
Sbjct: 89 LMGQAFAPGGVVVNMASLGDAAAPPRINVSAD---GRYVDAGGEQVWIDVLRASLARGVA 145
Query: 127 PVSWTDYLYPTVGGTLSNAGISGHTYQKGPQITNVLELDVLTGKGEFVTCSPQKDSELFY 186
P SWTDYLY TVGGTLSNAGISG ++ GPQI+NVLE+DV+TG GE VTCS Q +++LF
Sbjct: 146 PRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFD 205
Query: 187 AVLGGLGQFGIITRARIVLGPAKKRVKWLRILYSDFSSFSTDQETLISTT--GPSDKVMP 244
AVLGGLGQFG+ITRARI + PA R +W+R++Y+DF++FS DQE L + G P
Sbjct: 206 AVLGGLGQFGVITRARIAVEPAPARARWVRLVYTDFAAFSADQERLTAPRPGGGGASFGP 265
Query: 245 -DFLEGHLLMNQS------PLDFYPQSQRRKITFLVNQYG--ILYIIEVVTYYDN-KNEA 294
++EG + +NQS F+ + +I L + +Y IE YDN A
Sbjct: 266 MSYVEGSVFVNQSLATDLANTGFFTDADVARIVALAGERNATTVYSIEATLNYDNATAAA 325
Query: 295 KKVKQMLKSLKG---FLPGFVFEKDVTYLQFLNRVHDQEIELRKKGLWDIPHPWLNIFIP 351
V Q L S+ G ++ GF F++DV Y FL+RVH +E+ L K GLW +PHPWLN+F+P
Sbjct: 326 AAVDQELASVLGTLSYVEGFAFQRDVAYAAFLDRVHGEEVALNKLGLWRVPHPWLNMFVP 385
Query: 352 KSRITDFDNGVFRNILLKRNFTSSTVLVYPLLRSKWDERMSAVIAAEEEVFYFVGFLDAS 411
+SRI DFD GVF+ IL + ++VYPL +S WD+ MSA + E+VFY V L +S
Sbjct: 386 RSRIADFDRGVFKGILQGTDIVGP-LIVYPLNKSMWDDGMSAATPS-EDVFYAVSLLFSS 443
Query: 412 A--DNWEAFDNKNKDILQFCVNAGIKFKQYLGHHATKEEWIIHFG-SKWNTFQQRKTRFD 468
++ +N+ IL+FC AGI++K YL H + +W+ HFG +KWN F + K ++D
Sbjct: 444 VAPNDLARLQEQNRRILRFCDLAGIQYKTYLARHTDRSDWVRHFGAAKWNRFVEMKNKYD 503
Query: 469 PRMILSPGQRIFN 481
P+ +LSPGQ IFN
Sbjct: 504 PKRLLSPGQDIFN 516
>pdb|1W1O|A Chain A, Native Cytokinin Dehydrogenase
pdb|1W1Q|A Chain A, Plant Cytokinin Dehydrogenase In Complex With
Isopentenyladenine
pdb|1W1R|A Chain A, Plant Cytokinin Dehydrogenase In Complex With Trans-zeatin
pdb|1W1S|A Chain A, Plant Cytokinin Dehydrogenase In Complex With
Benzylaminopurine
Length = 534
Score = 431 bits (1109), Expect = e-121, Method: Compositional matrix adjust.
Identities = 234/493 (47%), Positives = 313/493 (63%), Gaps = 24/493 (4%)
Query: 8 LRTDPGAIKLASIDYGHIIKEKPFAVLYPTSVDDIRTLIYLSYNSL-FSYTIAAKGQAHS 66
LRTD A AS D+G+I P AVLYP+S D+ L+ + ++ + YTIA +G+ HS
Sbjct: 47 LRTDSNATAAASTDFGNITSALPAAVLYPSSTGDLVALLSAANSTPGWPYTIAFRGRGHS 106
Query: 67 TWGQAQANDGVVVQMNSLNRFRNGTGILISGDRSSGFYADVGGEQLWIDVLNATLTRGLS 126
GQA A GVVV M SL I +S D G Y D GGEQ+WIDVL A+L RG++
Sbjct: 107 LMGQAFAPGGVVVNMASLGDAAAPPRINVSAD---GRYVDAGGEQVWIDVLRASLARGVA 163
Query: 127 PVSWTDYLYPTVGGTLSNAGISGHTYQKGPQITNVLELDVLTGKGEFVTCSPQKDSELFY 186
P SWTDYLY TVGGTLSNAGISG ++ GPQI+NVLE+DV+TG GE VTCS Q +++LF
Sbjct: 164 PRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFD 223
Query: 187 AVLGGLGQFGIITRARIVLGPAKKRVKWLRILYSDFSSFSTDQETLISTT--GPSDKVMP 244
AVLGGLGQFG+ITRARI + PA R +W+R +Y+DF++FS DQE L + G P
Sbjct: 224 AVLGGLGQFGVITRARIAVEPAPARARWVRFVYTDFAAFSADQERLTAPRPGGGGASFGP 283
Query: 245 -DFLEGHLLMNQS------PLDFYPQSQRRKITFLVNQYG--ILYIIEVVTYYDN-KNEA 294
++EG + +NQS F+ + +I L + +Y IE YDN A
Sbjct: 284 MSYVEGSVFVNQSLATDLANTGFFTDADVARIVALAGERNATTVYSIEATLNYDNATAAA 343
Query: 295 KKVKQMLKSLKG---FLPGFVFEKDVTYLQFLNRVHDQEIELRKKGLWDIPHPWLNIFIP 351
V Q L S+ G ++ GF F++DV Y FL+RVH +E+ L K GLW +PHPWLN+F+P
Sbjct: 344 AAVDQELASVLGTLSYVEGFAFQRDVAYAAFLDRVHGEEVALNKLGLWRVPHPWLNMFVP 403
Query: 352 KSRITDFDNGVFRNILLKRNFTSSTVLVYPLLRSKWDERMSAVIAAEEEVFYFVGFLDAS 411
+SRI DFD GVF+ IL + ++VYPL +S WD+ MSA + E+VFY V L +S
Sbjct: 404 RSRIADFDRGVFKGILQGTDIVGP-LIVYPLNKSMWDDGMSAATPS-EDVFYAVSLLFSS 461
Query: 412 A--DNWEAFDNKNKDILQFCVNAGIKFKQYLGHHATKEEWIIHFG-SKWNTFQQRKTRFD 468
++ +N+ IL+FC AGI++K YL H + +W+ HFG +KWN F + K ++D
Sbjct: 462 VAPNDLARLQEQNRRILRFCDLAGIQYKTYLARHTDRSDWVRHFGAAKWNRFVEMKNKYD 521
Query: 469 PRMILSPGQRIFN 481
P+ +LSPGQ IFN
Sbjct: 522 PKRLLSPGQDIFN 534
>pdb|3S1D|A Chain A, Glu381ser Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With N6-Isopentenyladenosine
Length = 516
Score = 431 bits (1109), Expect = e-121, Method: Compositional matrix adjust.
Identities = 234/493 (47%), Positives = 313/493 (63%), Gaps = 24/493 (4%)
Query: 8 LRTDPGAIKLASIDYGHIIKEKPFAVLYPTSVDDIRTLIYLSYNSL-FSYTIAAKGQAHS 66
LRTD A AS D+G+I P AVLYP+S D+ L+ + ++ + YTIA +G+ HS
Sbjct: 29 LRTDSNATAAASTDFGNITSALPAAVLYPSSTADLVALLSAANSTPGWPYTIAFRGRGHS 88
Query: 67 TWGQAQANDGVVVQMNSLNRFRNGTGILISGDRSSGFYADVGGEQLWIDVLNATLTRGLS 126
GQA A GVVV M SL I +S D G Y D GGEQ+WIDVL A+L RG++
Sbjct: 89 LMGQAFAPGGVVVNMASLGDAAAPPRINVSAD---GRYVDAGGEQVWIDVLRASLARGVA 145
Query: 127 PVSWTDYLYPTVGGTLSNAGISGHTYQKGPQITNVLELDVLTGKGEFVTCSPQKDSELFY 186
P SWTDYLY TVGGTLSNAGISG ++ GPQI+NVLE+DV+TG GE VTCS Q +++LF
Sbjct: 146 PRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFD 205
Query: 187 AVLGGLGQFGIITRARIVLGPAKKRVKWLRILYSDFSSFSTDQETLISTT--GPSDKVMP 244
AVLGGLGQFG+ITRARI + PA R +W+R++Y+DF++FS DQE L + G P
Sbjct: 206 AVLGGLGQFGVITRARIAVEPAPARARWVRLVYTDFAAFSADQERLTAPRPGGGGASFGP 265
Query: 245 -DFLEGHLLMNQS------PLDFYPQSQRRKITFLVNQYG--ILYIIEVVTYYDN-KNEA 294
++EG + +NQS F+ + +I L + +Y IE YDN A
Sbjct: 266 MSYVEGSVFVNQSLATDLANTGFFTDADVARIVALAGERNATTVYSIEATLNYDNATAAA 325
Query: 295 KKVKQMLKSLKG---FLPGFVFEKDVTYLQFLNRVHDQEIELRKKGLWDIPHPWLNIFIP 351
V Q L S+ G ++ GF F++DV Y FL+RVH E+ L K GLW +PHPWLN+F+P
Sbjct: 326 AAVDQELASVLGTLSYVEGFAFQRDVAYAAFLDRVHGSEVALNKLGLWRVPHPWLNMFVP 385
Query: 352 KSRITDFDNGVFRNILLKRNFTSSTVLVYPLLRSKWDERMSAVIAAEEEVFYFVGFLDAS 411
+SRI DFD GVF+ IL + ++VYPL +S WD+ MSA + E+VFY V L +S
Sbjct: 386 RSRIADFDRGVFKGILQGTDIVGP-LIVYPLNKSMWDDGMSAATPS-EDVFYAVSLLFSS 443
Query: 412 A--DNWEAFDNKNKDILQFCVNAGIKFKQYLGHHATKEEWIIHFG-SKWNTFQQRKTRFD 468
++ +N+ IL+FC AGI++K YL H + +W+ HFG +KWN F + K ++D
Sbjct: 444 VAPNDLARLQEQNRRILRFCDLAGIQYKTYLARHTDRSDWVRHFGAAKWNRFVEMKNKYD 503
Query: 469 PRMILSPGQRIFN 481
P+ +LSPGQ IFN
Sbjct: 504 PKRLLSPGQDIFN 516
>pdb|3S1F|A Chain A, Asp169glu Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With N6-Isopentenyladenine
Length = 516
Score = 431 bits (1108), Expect = e-121, Method: Compositional matrix adjust.
Identities = 233/493 (47%), Positives = 314/493 (63%), Gaps = 24/493 (4%)
Query: 8 LRTDPGAIKLASIDYGHIIKEKPFAVLYPTSVDDIRTLIYLSYNSL-FSYTIAAKGQAHS 66
LRTD A AS D+G+I P AVLYP+S D+ L+ + ++ + YTIA +G+ HS
Sbjct: 29 LRTDSNATAAASTDFGNITSALPAAVLYPSSTADLVALLSAANSTPGWPYTIAFRGRGHS 88
Query: 67 TWGQAQANDGVVVQMNSLNRFRNGTGILISGDRSSGFYADVGGEQLWIDVLNATLTRGLS 126
GQA A GVVV M SL I +S D G Y D GGEQ+WIDVL A+L RG++
Sbjct: 89 LMGQAFAPGGVVVNMASLGDAAAPPRINVSAD---GRYVDAGGEQVWIDVLRASLARGVA 145
Query: 127 PVSWTDYLYPTVGGTLSNAGISGHTYQKGPQITNVLELDVLTGKGEFVTCSPQKDSELFY 186
P SWT+YLY TVGGTLSNAGISG ++ GPQI+NVLE+DV+TG GE VTCS Q +++LF
Sbjct: 146 PRSWTEYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFD 205
Query: 187 AVLGGLGQFGIITRARIVLGPAKKRVKWLRILYSDFSSFSTDQETLISTT--GPSDKVMP 244
AVLGGLGQFG+ITRARI + PA R +W+R++Y+DF++FS DQE L + G P
Sbjct: 206 AVLGGLGQFGVITRARIAVEPAPARARWVRLVYTDFAAFSADQERLTAPRPGGGGASFGP 265
Query: 245 -DFLEGHLLMNQS------PLDFYPQSQRRKITFLVNQYG--ILYIIEVVTYYDN-KNEA 294
++EG + +NQS F+ + +I L + +Y IE YDN A
Sbjct: 266 MSYVEGSVFVNQSLATDLANTGFFTDADVARIVALAGERNATTVYSIEATLNYDNATAAA 325
Query: 295 KKVKQMLKSLKG---FLPGFVFEKDVTYLQFLNRVHDQEIELRKKGLWDIPHPWLNIFIP 351
V Q L S+ G ++ GF F++DV Y FL+RVH +E+ L K GLW +PHPWLN+F+P
Sbjct: 326 AAVDQELASVLGTLSYVEGFAFQRDVAYAAFLDRVHGEEVALNKLGLWRVPHPWLNMFVP 385
Query: 352 KSRITDFDNGVFRNILLKRNFTSSTVLVYPLLRSKWDERMSAVIAAEEEVFYFVGFLDAS 411
+SRI DFD GVF+ IL + ++VYPL +S WD+ MSA + E+VFY V L +S
Sbjct: 386 RSRIADFDRGVFKGILQGTDIVGP-LIVYPLNKSMWDDGMSAATPS-EDVFYAVSLLFSS 443
Query: 412 A--DNWEAFDNKNKDILQFCVNAGIKFKQYLGHHATKEEWIIHFG-SKWNTFQQRKTRFD 468
++ +N+ IL+FC AGI++K YL H + +W+ HFG +KWN F + K ++D
Sbjct: 444 VAPNDLARLQEQNRRILRFCDLAGIQYKTYLARHTDRSDWVRHFGAAKWNRFVEMKNKYD 503
Query: 469 PRMILSPGQRIFN 481
P+ +LSPGQ IFN
Sbjct: 504 PKRLLSPGQDIFN 516
>pdb|2QPM|A Chain A, Leu492ala Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With Benzylurea Inhibitor Cpbu
pdb|3KJM|A Chain A, Leu492ala Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With Phenylurea Inhibitor Cppu
Length = 516
Score = 430 bits (1106), Expect = e-121, Method: Compositional matrix adjust.
Identities = 233/493 (47%), Positives = 313/493 (63%), Gaps = 24/493 (4%)
Query: 8 LRTDPGAIKLASIDYGHIIKEKPFAVLYPTSVDDIRTLIYLSYNSL-FSYTIAAKGQAHS 66
LRTD A AS D+G+I P AVLYP+S D+ L+ + ++ + YTIA +G+ HS
Sbjct: 29 LRTDSNATAAASTDFGNITSALPAAVLYPSSTADLVALLSAANSTPGWPYTIAFRGRGHS 88
Query: 67 TWGQAQANDGVVVQMNSLNRFRNGTGILISGDRSSGFYADVGGEQLWIDVLNATLTRGLS 126
GQA A GVVV M SL I +S D G Y D GGEQ+WIDVL A+L RG++
Sbjct: 89 LMGQAFAPGGVVVNMASLGDAAAPPRINVSAD---GRYVDAGGEQVWIDVLRASLARGVA 145
Query: 127 PVSWTDYLYPTVGGTLSNAGISGHTYQKGPQITNVLELDVLTGKGEFVTCSPQKDSELFY 186
P SWTDYLY TVGGTLSNAGISG ++ GPQI+NVLE+DV+TG GE VTCS Q +++LF
Sbjct: 146 PRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFD 205
Query: 187 AVLGGLGQFGIITRARIVLGPAKKRVKWLRILYSDFSSFSTDQETLISTT--GPSDKVMP 244
AVLGGLGQFG+ITRARI + PA R +W+R++Y+DF++FS DQE L + G P
Sbjct: 206 AVLGGLGQFGVITRARIAVEPAPARARWVRLVYTDFAAFSADQERLTAPRPGGGGASFGP 265
Query: 245 -DFLEGHLLMNQS------PLDFYPQSQRRKITFLVNQYG--ILYIIEVVTYYDN-KNEA 294
++EG + +NQS F+ + +I L + +Y IE YDN A
Sbjct: 266 MSYVEGSVFVNQSLATDLANTGFFTDADVARIVALAGERNATTVYSIEATLNYDNATAAA 325
Query: 295 KKVKQMLKSLKG---FLPGFVFEKDVTYLQFLNRVHDQEIELRKKGLWDIPHPWLNIFIP 351
V Q L S+ G ++ GF F++DV Y FL+RVH +E+ L K GLW +PHPWLN+F+P
Sbjct: 326 AAVDQELASVLGTLSYVEGFAFQRDVAYAAFLDRVHGEEVALNKLGLWRVPHPWLNMFVP 385
Query: 352 KSRITDFDNGVFRNILLKRNFTSSTVLVYPLLRSKWDERMSAVIAAEEEVFYFVGFLDAS 411
+SRI DFD GVF+ IL + ++VYPL +S WD+ MSA + E+VFY V L +S
Sbjct: 386 RSRIADFDRGVFKGILQGTDIVGP-LIVYPLNKSMWDDGMSAATPS-EDVFYAVSLLFSS 443
Query: 412 A--DNWEAFDNKNKDILQFCVNAGIKFKQYLGHHATKEEWIIHFG-SKWNTFQQRKTRFD 468
++ +N+ IL+FC AGI++K Y H + +W+ HFG +KWN F + K ++D
Sbjct: 444 VAPNDLARLQEQNRRILRFCDLAGIQYKTYAARHTDRSDWVRHFGAAKWNRFVEMKNKYD 503
Query: 469 PRMILSPGQRIFN 481
P+ +LSPGQ IFN
Sbjct: 504 PKRLLSPGQDIFN 516
>pdb|2EXR|A Chain A, X-Ray Structure Of Cytokinin OxidaseDEHYDROGENASE (CKX)
FROM Arabidopsis Thaliana At5g21482
pdb|2Q4W|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Cytokinin OxidaseDEHYDROGENASE (CKX) FROM ARABIDOPSIS
THALIANA AT5G21482
Length = 524
Score = 365 bits (937), Expect = e-101, Method: Compositional matrix adjust.
Identities = 204/484 (42%), Positives = 289/484 (59%), Gaps = 24/484 (4%)
Query: 14 AIKLASIDYGHIIKEKPFAVLYPTSVDDIRTLIYLSYNSLFSYTIAAKGQAHSTWGQAQA 73
A +A D+G KP AV+ P +DI + + S T+AA+G HS GQA A
Sbjct: 46 AADIAGRDFGGXNCVKPLAVVRPVGPEDIAGAVKAALRS-DKLTVAARGNGHSINGQAXA 104
Query: 74 NDGVVVQMNSLNRFRNGTGILISGDRSSGFYADVGGEQLWIDVLNATLTR-GLSPVSWTD 132
G+VV ++ G L GD ++ + DV G LW DVL ++ GL+P SWTD
Sbjct: 105 EGGLVVDXSTTAENHFEVGYLSGGDATA--FVDVSGGALWEDVLKRCVSEYGLAPRSWTD 162
Query: 133 YLYPTVGGTLSNAGISGHTYQKGPQITNVLELDVLTGKGEFVTCSPQKDSELFYAVLGGL 192
YL TVGGTLSNAG+SG ++ GPQ +NV ELDV+TG G+ VTCS ++SELF++VLGGL
Sbjct: 163 YLGLTVGGTLSNAGVSGQAFRYGPQTSNVTELDVVTGNGDVVTCSEIENSELFFSVLGGL 222
Query: 193 GQFGIITRARIVLGPAKKRVKWLRILYSDFSSFSTDQETLISTTGPSDKVMPDFLEGHLL 252
GQFGIITRAR++L PA V+W+R++Y++F F+ D E L+S S D++EG +
Sbjct: 223 GQFGIITRARVLLQPAPDXVRWIRVVYTEFDEFTQDAEWLVSQKNESSF---DYVEGFVF 279
Query: 253 MNQS-PLDFYPQ-----SQRRKITFLVNQYG-ILYIIEVVTYYDNKNEAKKVKQMLKSLK 305
+N + P++ +P T L G +LY +E+ +Y + + + + ++ L
Sbjct: 280 VNGADPVNGWPTVPLHPDHEFDPTRLPQSCGSVLYCLELGLHYRDSDSNSTIDKRVERLI 339
Query: 306 G---FLPGFVFEKDVTYLQFLNRVHDQEIELRKKGLWDIPHPWLNIFIPKSRITDFDNGV 362
G F G FE D+ Y+ FL RV E ++ G W+ PHPWLN+F+ K I DF+ V
Sbjct: 340 GRLRFNEGLRFEVDLPYVDFLLRVKRSEEIAKENGTWETPHPWLNLFVSKRDIGDFNRTV 399
Query: 363 FRNILLKRNFTSSTVLVYPLLRSKWDERMSAVIAAEEEVFYFVGFLD-----ASADNWEA 417
F+ ++ +N + LVYPLLRS+WD+R S VI E E+FY V L A + E
Sbjct: 400 FKELV--KNGVNGPXLVYPLLRSRWDDRTSVVIPEEGEIFYIVALLRFVPPCAKVSSVEK 457
Query: 418 FDNKNKDILQFCVNAGIKFKQYLGHHATKEEWIIHFGSKWNTFQQRKTRFDPRMILSPGQ 477
+N++I+ +CV GI +K YL H+ ++EEWI HFG++W+ F RK FDP ILSPGQ
Sbjct: 458 XVAQNQEIVHWCVKNGIDYKLYLPHYKSQEEWIRHFGNRWSRFVDRKAXFDPXAILSPGQ 517
Query: 478 RIFN 481
+IFN
Sbjct: 518 KIFN 521
>pdb|4AUT|A Chain A, Crystal Structure Of The Tuberculosis Drug Target
Decaprenyl-Phosphoryl-Beta-D-Ribofuranose-2-
Oxidoreductase (Dpre1) From Mycobacterium Smegmatis
pdb|4F4Q|A Chain A, Crystal Structure Of M. Smegmatis Dpre1 In Complex With
Fad And Covalently Bound Btz043
Length = 468
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 72/158 (45%), Gaps = 19/158 (12%)
Query: 58 IAAKGQAHSTWGQAQANDGVVVQMNSLNRFRNGTGILISGDRSSGFYADVGGEQLWIDVL 117
+ A+G S AQ G+V+ M +LNR + + SG R A V +QL +
Sbjct: 58 VIARGLGRSYGDNAQNGGGLVIDMPALNRIHS----IDSGTRLVDVDAGVSLDQL----M 109
Query: 118 NATLTRGLSPVSWTDYL----YPTVGGTLSNAGISGHTYQKGPQITN-VLELDVLTGKGE 172
A L GL W L TVGG + I G + N V +++LT GE
Sbjct: 110 KAALPHGL----WVPVLPGTRQVTVGGAI-GCDIHGKNHHSAGSFGNHVRSMELLTANGE 164
Query: 173 FVTCSPQ-KDSELFYAVLGGLGQFGIITRARIVLGPAK 209
+P DS+LF+A +GG G GII RA I + P +
Sbjct: 165 VRHLTPAGPDSDLFWATVGGNGLTGIILRATIEMTPTE 202
>pdb|2BVF|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 3 (P1)
pdb|2BVF|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 3 (P1)
pdb|2BVG|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|C Chain C, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|D Chain D, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVH|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|C Chain C, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|D Chain D, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
Length = 459
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 83/181 (45%), Gaps = 18/181 (9%)
Query: 28 EKPFAVLYPTSVDDI-RTLIYLSYNSLFSYTIAAKGQAHSTWGQAQANDGVVVQMNSLNR 86
++P + S D+ +++ Y N L I+ + H+ G A + G+V+ + R
Sbjct: 37 QRPSLIARCLSAGDVAKSVRYACDNGL---EISVRSGGHNPNGYATNDGGIVLDL----R 89
Query: 87 FRNGTGILISGDRSSGFYADVGGEQLWIDVLNATLTRGLSPVSWTDYLYPTVG--GTLSN 144
N I +G R A +GG + D++ GL+ V+ ++P VG G N
Sbjct: 90 LMNSIHIDTAGSR-----ARIGGGVISGDLVKEAAKFGLAAVTG---MHPKVGFCGLALN 141
Query: 145 AGISGHTYQKGPQITNVLELDVLTGKGEFVTCSPQKDSELFYAVLGGLGQFGIITRARIV 204
G+ T + G N+L ++T G+ + CS + ELF+AV G FG++T +
Sbjct: 142 GGVGFLTPKYGLASDNILGATLVTATGDVIYCSDDERPELFWAVRGAGPNFGVVTEVEVQ 201
Query: 205 L 205
L
Sbjct: 202 L 202
>pdb|4G3T|A Chain A, Mycobacterium Smegmatis Dpre1 - Hexagonal Crystal Form
pdb|4G3U|A Chain A, Mycobacterium Smegmatis Dpre1 - Monoclinic Crystal Form
pdb|4G3U|B Chain B, Mycobacterium Smegmatis Dpre1 - Monoclinic Crystal Form
Length = 403
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 65/142 (45%), Gaps = 11/142 (7%)
Query: 70 QAQANDGVVVQMNSLNRFRNGTGILISGDRSSGFYADVGGEQLWIDVLNATLTRGLSPVS 129
AQ G+V+ M +LNR + + SG R A V +QL + A L GL
Sbjct: 5 NAQNGGGLVIDMPALNRIHS----IDSGTRLVDVDAGVSLDQL----MKAALPHGLWVPV 56
Query: 130 WTDYLYPTVGGTLSNAGISGHTYQKGPQITN-VLELDVLTGKGEFVTCSPQ-KDSELFYA 187
TVGG + I G + N V +++LT GE +P DS+LF+A
Sbjct: 57 LPGTRQVTVGGAI-GCDIHGKNHHSAGSFGNHVRSMELLTANGEVRHLTPAGPDSDLFWA 115
Query: 188 VLGGLGQFGIITRARIVLGPAK 209
+GG G GII RA I + P +
Sbjct: 116 TVGGNGLTGIILRATIEMTPTE 137
>pdb|4FDN|A Chain A, Mycobacterium Tuberculosis Dpre1 In Complex With Ct325 -
Hexagonal Crystal Form
pdb|4FDO|A Chain A, Mycobacterium Tuberculosis Dpre1 In Complex With Ct319
pdb|4FDP|A Chain A, Mycobacterium Tuberculosis Dpre1 - Monoclinic Crystal Form
pdb|4FDP|B Chain B, Mycobacterium Tuberculosis Dpre1 - Monoclinic Crystal Form
pdb|4FEH|A Chain A, Mycobacterium Tuberculosis Dpre1 - Hexagonal Crystal Form
pdb|4FF6|A Chain A, Mycobacterium Tuberculosis Dpre1 In Complex With Ct325 -
Monoclinic Crystal Form
pdb|4FF6|B Chain B, Mycobacterium Tuberculosis Dpre1 In Complex With Ct325 -
Monoclinic Crystal Form
Length = 481
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 62/144 (43%), Gaps = 19/144 (13%)
Query: 70 QAQANDGVVVQMNSLNRFRNGTGILISGDRSSGFYADVGGEQLWIDVLNATLTRGLSPVS 129
AQ G+V+ M LN + D +G D ++ A L GL
Sbjct: 83 NAQNGGGLVIDMTPLNTIHSIDADTKLVDIDAGVNLD--------QLMKAALPFGL---- 130
Query: 130 WTDYL----YPTVGGTLSNAGISGHTYQKGPQITN-VLELDVLTGKGEFVTCSPQ-KDSE 183
W L TVGG ++ I G + N V +D+LT GE +P +D+E
Sbjct: 131 WVPVLPGTRQVTVGGAIA-CDIHGKNHHSAGSFGNHVRSMDLLTADGEIRHLTPTGEDAE 189
Query: 184 LFYAVLGGLGQFGIITRARIVLGP 207
LF+A +GG G GII RA I + P
Sbjct: 190 LFWATVGGNGLTGIIMRATIEMTP 213
>pdb|4BCA|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
pdb|4BCA|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
pdb|4BCA|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
pdb|4BCA|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
Length = 658
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 50/239 (20%), Positives = 99/239 (41%), Gaps = 22/239 (9%)
Query: 30 PFAVLYPTSVDDIRTLIYLSYNSLFSYTIAAKGQAHSTWGQAQANDG---VVVQMNSLNR 86
P VL+PT DD+ ++ L+ G + S A++ + + + +NR
Sbjct: 206 PDIVLWPTCHDDVVKIVNLACKYNLCIIPIGGGTSVSYGLMCPADETRTIISLDTSQMNR 265
Query: 87 FRNGTGILISGDRSSGFYADVGGEQLWIDVLNATLTRGLSPVSWTDYLYPTVGGTLSN-- 144
+ + ++ A + G++L + + G P S + TVGG +S
Sbjct: 266 IL----WVDENNLTAHVEAGITGQELERQLKESGYCTGHEPDSLE---FSTVGGWISTRA 318
Query: 145 AGISGHTYQKGPQITNVLELDVLTGKGEFV-TCSPQKDS---ELFYAVLGGLGQFGIITR 200
+G+ + Y + V+ + V+T +G +C + S ++ + ++G G G+IT
Sbjct: 319 SGMKKNIYGNIEDL--VVHMKVVTPRGVIEKSCQGPRMSTGPDIHHFIMGSEGTLGVITE 376
Query: 201 ARIVLGPAKKRVKWLRILYSDFS-SFSTDQETLISTTGPSDKVMPD---FLEGHLLMNQ 255
A I + P + K+ + + +F + +E P+ + D F GH L Q
Sbjct: 377 ATIKIRPTPEYQKYGSVAFPNFEQGVACLREIAKQRCAPASIRLMDNQQFQFGHALKPQ 435
>pdb|4BBY|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BBY|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BBY|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BBY|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BC9|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
pdb|4BC9|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
pdb|4BC9|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
pdb|4BC9|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
Length = 658
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 50/239 (20%), Positives = 99/239 (41%), Gaps = 22/239 (9%)
Query: 30 PFAVLYPTSVDDIRTLIYLSYNSLFSYTIAAKGQAHSTWGQAQANDG---VVVQMNSLNR 86
P VL+PT DD+ ++ L+ G + S A++ + + + +NR
Sbjct: 206 PDIVLWPTCHDDVVKIVNLACKYNLCIIPIGGGTSVSYGLMCPADETRTIISLDTSQMNR 265
Query: 87 FRNGTGILISGDRSSGFYADVGGEQLWIDVLNATLTRGLSPVSWTDYLYPTVGGTLSN-- 144
+ + ++ A + G++L + + G P S + TVGG +S
Sbjct: 266 IL----WVDENNLTAHVEAGITGQELERQLKESGYCTGHEPDSLE---FSTVGGWISTRA 318
Query: 145 AGISGHTYQKGPQITNVLELDVLTGKGEFV-TCSPQKDS---ELFYAVLGGLGQFGIITR 200
+G+ + Y + V+ + V+T +G +C + S ++ + ++G G G+IT
Sbjct: 319 SGMKKNIYGNIEDL--VVHMKVVTPRGVIEKSCQGPRMSTGPDIHHFIMGSEGTLGVITE 376
Query: 201 ARIVLGPAKKRVKWLRILYSDFS-SFSTDQETLISTTGPSDKVMPD---FLEGHLLMNQ 255
A I + P + K+ + + +F + +E P+ + D F GH L Q
Sbjct: 377 ATIKIRPTPEYQKYGSVAFPNFEQGVACLREIAKQRCAPASIRLMDNQQFQFGHALKPQ 435
>pdb|4BC7|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
pdb|4BC7|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
pdb|4BC7|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
pdb|4BC7|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
Length = 658
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 42/202 (20%), Positives = 87/202 (43%), Gaps = 18/202 (8%)
Query: 30 PFAVLYPTSVDDIRTLIYLSYNSLFSYTIAAKGQAHSTWGQAQANDG---VVVQMNSLNR 86
P VL+PT DD+ ++ L+ G + S A++ + + + +NR
Sbjct: 206 PDIVLWPTCHDDVVKIVNLACKYNLCIIPIGGGTSVSYGLMCPADETRTIISLDTSQMNR 265
Query: 87 FRNGTGILISGDRSSGFYADVGGEQLWIDVLNATLTRGLSPVSWTDYLYPTVGGTLSN-- 144
+ + ++ A + G++L + + G P S + TVGG +S
Sbjct: 266 IL----WVDENNLTAHVEAGITGQELERQLKESGYCTGHEPDSLE---FSTVGGWISTRA 318
Query: 145 AGISGHTYQKGPQITNVLELDVLTGKGEFV-TCSPQKDS---ELFYAVLGGLGQFGIITR 200
+G+ + Y + V+ + V+T +G +C + S ++ + ++G G G+IT
Sbjct: 319 SGMKKNIYGNIEDL--VVHMKVVTPRGVIEKSCQGPRMSTGPDIHHFIMGSEGTLGVITE 376
Query: 201 ARIVLGPAKKRVKWLRILYSDF 222
A I + P + K+ + + +F
Sbjct: 377 ATIKIRPTPEYQKYGSVAFPNF 398
>pdb|3RJ8|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale
pdb|3RJA|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale In Complex With Substrate Analogue
Length = 473
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 37/191 (19%), Positives = 79/191 (41%), Gaps = 28/191 (14%)
Query: 30 PFAVLYPTSVDDIRTLIYLSYNSLFSYTIAAKGQAHSTWGQAQANDGVVVQMNSLNRFRN 89
P A+ + I++ + + + + G +++++G N ++VQ++ +
Sbjct: 37 PTAIAQTQTTAHIQSAVQCAKKLNLKVSAKSGGHSYASFGFGGENGHLMVQLDRM----- 91
Query: 90 GTGILISGDRSSGFYADVGGEQLWI-DVLNATLTRGLSPVSWTDYLYPTVGGTLSNAGIS 148
++ D++ + + G + VLN R +S GT GIS
Sbjct: 92 -IDVISYNDKTGIAHVEPGARLGHLATVLNDKYGRAIS------------HGTCPGVGIS 138
Query: 149 GH---------TYQKGPQITNVLELDVLTGKGEFVTCSPQKDSELFYAVLGGLGQFGIIT 199
GH ++ G + +V+ + V+ G V S ++++LF+ + G FGI+
Sbjct: 139 GHFAHGGFGFSSHMHGLAVDSVVGVTVVLADGRIVEASATENADLFWGIKGAGSNFGIVA 198
Query: 200 RARIVLGPAKK 210
++ PA K
Sbjct: 199 VWKLATFPAPK 209
>pdb|1BML|C Chain C, Complex Of The Catalytic Domain Of Human Plasmin And
Streptokinase
pdb|1BML|D Chain D, Complex Of The Catalytic Domain Of Human Plasmin And
Streptokinase
Length = 362
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 307 FLPGFVFEKDVTYLQFLNRVHDQEIELRKKGLWDIPHPWLNIFIPKSRITDFDNGVFRNI 366
F PG K + L + + QE+ + + + + HP I+ S I DN +FR I
Sbjct: 164 FRPGLKDTKLLKTLAIGDTITSQELLAQAQSILNKTHPGYTIYERDSSIVTHDNDIFRTI 223
Query: 367 L-LKRNFT 373
L + + FT
Sbjct: 224 LPMDQEFT 231
>pdb|1C4P|A Chain A, Beta Domain Of Streptokinase
pdb|1C4P|B Chain B, Beta Domain Of Streptokinase
pdb|1C4P|C Chain C, Beta Domain Of Streptokinase
pdb|1C4P|D Chain D, Beta Domain Of Streptokinase
Length = 137
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 307 FLPGFVFEKDVTYLQFLNRVHDQEIELRKKGLWDIPHPWLNIFIPKSRITDFDNGVFRNI 366
F PG K + L + + QE+ + + + + HP I+ S I DN +FR I
Sbjct: 27 FRPGLKDTKLLKTLAIGDTITSQELLAQAQSILNKTHPGYTIYERDSSIVTHDNDIFRTI 86
Query: 367 L-LKRNFT 373
L + + FT
Sbjct: 87 LPMDQEFT 94
>pdb|2L69|A Chain A, Solution Nmr Structure Of De Novo Designed Protein, P-Loop
Ntpase Fold, Northeast Structural Genomics Consortium
Target Or28
Length = 134
Score = 30.8 bits (68), Expect = 1.9, Method: Composition-based stats.
Identities = 29/114 (25%), Positives = 54/114 (47%), Gaps = 19/114 (16%)
Query: 225 FSTDQETLISTTGPSDKVMPDFLEGHLLMNQSPLDFYPQSQRRKITFLVNQYGILYIIEV 284
FSTD+ETL + D ++ + ++ PQ + I LV +Y ++ V
Sbjct: 8 FSTDEETL--------RKFKDIIKKNGFKVRTVRS--PQELKDSIEELVKKYNATIVVVV 57
Query: 285 VTYYDNKNEAKKVKQMLKSLKGFLPGFVFEKDVTYLQFLNRVHDQEIELRKKGL 338
V D+K A+K + +KSL + ++++D L+ +R E+R++G
Sbjct: 58 V---DDKEWAEKAIRFVKSLGAQVLIIIYDQDQNRLEEFSR------EVRRRGF 102
>pdb|4EPL|A Chain A, Crystal Structure Of Arabidopsis Thaliana Gh3.11 (Jar1) In
Complex With Ja-Ile
Length = 581
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 9/75 (12%)
Query: 364 RNILLKRNFTSSTVLVYPLLRSKWDERMSAVIAAEEEVFYFVGFLDASADN------WEA 417
RN++L N +T L +R+S + EV F ++D S D WE
Sbjct: 431 RNLILSINIDKNTERDLQLSVESAAKRLSE---EKIEVIDFSSYIDVSTDPGHYAIFWEI 487
Query: 418 FDNKNKDILQFCVNA 432
N+D+LQ C N
Sbjct: 488 SGETNEDVLQDCCNC 502
>pdb|1QB7|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani.
pdb|1QB8|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani
pdb|1QCC|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani
pdb|1QCD|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani
Length = 236
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Query: 15 IKLASIDYGHIIKEKPFAVLYPTSVDDIRTLIYLSYNS-----LFSYTIAAKGQAHSTWG 69
++ A + G +I+ +P+ Y + ++ T+ Y S L +A G A S
Sbjct: 100 MRKADKNAGLLIRSEPYEKEYKEAAPEVMTIRYGSIGKGSRVVLIDDVLATGGTALSGLQ 159
Query: 70 QAQANDGVVVQMNSL 84
+A+D VVV+M S+
Sbjct: 160 LVEASDAVVVEMVSI 174
>pdb|3ZVN|A Chain A, The Structural Basis For Substrate Recognition By
Mammalian Polynucleotide Kinase 3' Phosphatase
Length = 416
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 38/97 (39%), Gaps = 19/97 (19%)
Query: 387 WD---ERMSAVIAAEEEVFYFVGFLDASADNWEAFDNKNKDILQ----FCVNAGIKFKQY 439
WD E+ + I E FVG NW A K KD F +N G+ F
Sbjct: 159 WDHLQEQANEGIPISVEDSVFVGDAAGRLANW-APGRKKKDFSCADRLFALNVGLPF--- 214
Query: 440 LGHHATKEEWIIHFGSKWNTFQQRKTRFDPRMILSPG 476
AT EE+ + KW + FDPR I S G
Sbjct: 215 ----ATPEEFFL----KWPAARFELPAFDPRTISSAG 243
>pdb|3ZVL|A Chain A, The Structural Basis For Substrate Recognition By
Mammalian Polynucleotide Kinase 3' Phosphatase
Length = 416
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 38/97 (39%), Gaps = 19/97 (19%)
Query: 387 WD---ERMSAVIAAEEEVFYFVGFLDASADNWEAFDNKNKDILQ----FCVNAGIKFKQY 439
WD E+ + I E FVG NW A K KD F +N G+ F
Sbjct: 159 WDHLQEQANEGIPISVEDSVFVGDAAGRLANW-APGRKKKDFSCADRLFALNVGLPF--- 214
Query: 440 LGHHATKEEWIIHFGSKWNTFQQRKTRFDPRMILSPG 476
AT EE+ + KW + FDPR I S G
Sbjct: 215 ----ATPEEFFL----KWPAARFELPAFDPRTISSAG 243
>pdb|3ZVM|A Chain A, The Structural Basis For Substrate Recognition By
Mammalian Polynucleotide Kinase 3' Phosphatase
pdb|3ZVM|B Chain B, The Structural Basis For Substrate Recognition By
Mammalian Polynucleotide Kinase 3' Phosphatase
Length = 416
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 38/97 (39%), Gaps = 19/97 (19%)
Query: 387 WD---ERMSAVIAAEEEVFYFVGFLDASADNWEAFDNKNKDILQ----FCVNAGIKFKQY 439
WD E+ + I E FVG NW A K KD F +N G+ F
Sbjct: 159 WDHLQEQANEGIPISVEDSVFVGDAAGRLANW-APGRKKKDFSCADRLFALNVGLPF--- 214
Query: 440 LGHHATKEEWIIHFGSKWNTFQQRKTRFDPRMILSPG 476
AT EE+ + KW + FDPR I S G
Sbjct: 215 ----ATPEEFFL----KWPAARFELPAFDPRTISSAG 243
>pdb|3GLD|A Chain A, Crystal Structure Of The Major Pilin From Streptococcus
Pyogenes E117a Mutant
pdb|3GLD|B Chain B, Crystal Structure Of The Major Pilin From Streptococcus
Pyogenes E117a Mutant
pdb|3GLD|C Chain C, Crystal Structure Of The Major Pilin From Streptococcus
Pyogenes E117a Mutant
Length = 295
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 16 KLASIDYGHIIKEKPFAVLYPTSVDDIRTLIYLSYNSLFSYTIAAKGQAHSTWGQAQ 72
K A D+ + EKP Y + + I + +SY++ SYT+ Q H W + Q
Sbjct: 81 KTAEFDFSEVTFEKPGVYYYKVTAEKIDKVPGVSYDTT-SYTV----QVHVLWNEEQ 132
>pdb|3U7E|B Chain B, Crystal Structure Of Mpnkp Catalytic Fragment (D170a)
pdb|3U7F|B Chain B, Crystal Structure Of Mpnkp Catalytic Fragment (D170a)
Bound To Single- Stranded Dna (Tcctcp)
pdb|3U7H|B Chain B, Crystal Structure Of Mpnkp Catalytic Fragment (D170a)
Bound To Single- Stranded Dna (Tccttp)
Length = 381
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 38/97 (39%), Gaps = 19/97 (19%)
Query: 387 WD---ERMSAVIAAEEEVFYFVGFLDASADNWEAFDNKNKDILQ----FCVNAGIKFKQY 439
WD E+ + I E FVG NW A K KD F +N G+ F
Sbjct: 124 WDHLQEQANEGIPISVEDSVFVGDAAGRLANW-APGRKKKDFSCADRLFALNVGLPF--- 179
Query: 440 LGHHATKEEWIIHFGSKWNTFQQRKTRFDPRMILSPG 476
AT EE+ + KW + FDPR I S G
Sbjct: 180 ----ATPEEFFL----KWPAARFELPAFDPRTISSAG 208
>pdb|1YJ5|A Chain A, Molecular Architecture Of Mammalian Polynucleotide Kinase,
A Dna Repair Enzyme
pdb|1YJ5|B Chain B, Molecular Architecture Of Mammalian Polynucleotide Kinase,
A Dna Repair Enzyme
Length = 383
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 38/97 (39%), Gaps = 19/97 (19%)
Query: 387 WD---ERMSAVIAAEEEVFYFVGFLDASADNWEAFDNKNKDILQ----FCVNAGIKFKQY 439
WD E+ + I E FVG NW A K KD F +N G+ F
Sbjct: 126 WDHLQEQANEGIPISVEDSVFVGDAAGRLANW-APGRKKKDFSCADRLFALNVGLPF--- 181
Query: 440 LGHHATKEEWIIHFGSKWNTFQQRKTRFDPRMILSPG 476
AT EE+ + KW + FDPR I S G
Sbjct: 182 ----ATPEEFFL----KWPAARFELPAFDPRTISSAG 210
>pdb|3U7G|A Chain A, Crystal Structure Of Mpnkp Catalytic Fragment (D170a)
Bound To Single- Stranded Dna (Tcctap)
Length = 379
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 38/97 (39%), Gaps = 19/97 (19%)
Query: 387 WD---ERMSAVIAAEEEVFYFVGFLDASADNWEAFDNKNKDILQ----FCVNAGIKFKQY 439
WD E+ + I E FVG NW A K KD F +N G+ F
Sbjct: 122 WDHLQEQANEGIPISVEDSVFVGDAAGRLANW-APGRKKKDFSCADRLFALNVGLPF--- 177
Query: 440 LGHHATKEEWIIHFGSKWNTFQQRKTRFDPRMILSPG 476
AT EE+ + KW + FDPR I S G
Sbjct: 178 ----ATPEEFFL----KWPAARFELPAFDPRTISSAG 206
>pdb|1QQR|A Chain A, Crystal Structure Of Streptokinase Domain B
pdb|1QQR|B Chain B, Crystal Structure Of Streptokinase Domain B
pdb|1QQR|C Chain C, Crystal Structure Of Streptokinase Domain B
pdb|1QQR|D Chain D, Crystal Structure Of Streptokinase Domain B
Length = 138
Score = 28.1 bits (61), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 307 FLPGFVFEKDVTYLQFLNRVHDQEIELRKKGLWDIPHPWLNIFIPKSRITDFDNGVFRNI 366
F PG K + L + + QE+ + + + + HP I+ S I DN +FR I
Sbjct: 25 FRPGLKLTKLLKTLAIGDTITSQELLAQAQSILNKNHPGYTIYERDSSIVTHDNDIFRTI 84
Query: 367 L-LKRNFT 373
L + + FT
Sbjct: 85 LPMDQEFT 92
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,505,886
Number of Sequences: 62578
Number of extensions: 665040
Number of successful extensions: 1361
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1299
Number of HSP's gapped (non-prelim): 35
length of query: 482
length of database: 14,973,337
effective HSP length: 103
effective length of query: 379
effective length of database: 8,527,803
effective search space: 3232037337
effective search space used: 3232037337
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)