Query 044784
Match_columns 482
No_of_seqs 197 out of 1806
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 06:43:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044784.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044784hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02441 cytokinin dehydrogena 100.0 1.1E-71 2.4E-76 566.6 48.4 469 4-482 39-520 (525)
2 KOG1231 Proteins containing th 100.0 1.1E-61 2.3E-66 462.8 30.2 443 4-480 38-498 (505)
3 PLN02805 D-lactate dehydrogena 100.0 5E-53 1.1E-57 437.0 36.3 426 4-481 106-551 (555)
4 PRK11230 glycolate oxidase sub 100.0 9.6E-52 2.1E-56 425.7 35.7 427 6-480 32-473 (499)
5 TIGR00387 glcD glycolate oxida 100.0 1.2E-47 2.5E-52 389.7 29.7 399 33-477 1-413 (413)
6 COG0277 GlcD FAD/FMN-containin 100.0 1.7E-44 3.8E-49 374.7 33.1 433 8-481 11-458 (459)
7 KOG1232 Proteins containing th 100.0 6E-41 1.3E-45 312.9 14.7 412 6-479 66-511 (511)
8 TIGR01679 bact_FAD_ox FAD-link 100.0 2E-38 4.3E-43 321.5 33.7 200 19-235 1-200 (419)
9 TIGR01678 FAD_lactone_ox sugar 100.0 5E-38 1.1E-42 318.6 35.1 203 19-235 4-206 (438)
10 TIGR01676 GLDHase galactonolac 100.0 6.9E-37 1.5E-41 311.4 36.3 204 18-235 50-253 (541)
11 TIGR01677 pln_FAD_oxido plant- 100.0 1.6E-36 3.4E-41 313.4 34.6 209 15-235 17-236 (557)
12 PRK11282 glcE glycolate oxidas 100.0 2.2E-35 4.7E-40 288.9 27.6 184 38-234 3-194 (352)
13 PLN02465 L-galactono-1,4-lacto 100.0 3.2E-33 7E-38 286.9 35.2 206 16-235 83-288 (573)
14 KOG1233 Alkyl-dihydroxyacetone 100.0 1.7E-33 3.7E-38 263.6 23.1 427 21-478 152-612 (613)
15 PRK11183 D-lactate dehydrogena 100.0 1.2E-32 2.7E-37 275.6 19.5 233 5-252 15-308 (564)
16 PF09265 Cytokin-bind: Cytokin 100.0 2.3E-31 4.9E-36 248.4 18.8 266 209-480 1-281 (281)
17 PF01565 FAD_binding_4: FAD bi 99.9 4.4E-27 9.6E-32 203.4 12.3 138 30-177 1-139 (139)
18 KOG4730 D-arabinono-1, 4-lacto 99.9 1E-24 2.2E-29 209.7 18.8 188 29-230 49-237 (518)
19 PRK13905 murB UDP-N-acetylenol 99.9 1.3E-24 2.8E-29 210.8 15.0 164 20-209 22-193 (298)
20 PRK14652 UDP-N-acetylenolpyruv 99.9 2.1E-22 4.7E-27 194.3 14.5 166 20-210 27-197 (302)
21 PRK12436 UDP-N-acetylenolpyruv 99.9 6.8E-22 1.5E-26 191.3 14.3 158 26-208 33-197 (305)
22 TIGR00179 murB UDP-N-acetyleno 99.9 6.1E-21 1.3E-25 183.1 14.3 158 26-207 9-174 (284)
23 PRK13906 murB UDP-N-acetylenol 99.9 6.9E-21 1.5E-25 184.2 14.7 158 26-208 33-197 (307)
24 PRK13903 murB UDP-N-acetylenol 99.8 1.6E-20 3.5E-25 184.2 15.0 165 20-209 24-197 (363)
25 KOG1262 FAD-binding protein DI 99.8 5.1E-20 1.1E-24 173.6 16.5 167 77-252 104-271 (543)
26 PRK14653 UDP-N-acetylenolpyruv 99.8 8.9E-19 1.9E-23 168.0 14.6 162 20-210 25-195 (297)
27 PRK14649 UDP-N-acetylenolpyruv 99.8 7.2E-19 1.6E-23 169.4 13.9 170 21-209 13-193 (295)
28 PRK14650 UDP-N-acetylenolpyruv 99.7 1E-17 2.2E-22 160.1 12.4 166 20-210 24-196 (302)
29 COG0812 MurB UDP-N-acetylmuram 99.7 4.4E-17 9.4E-22 153.0 14.5 165 21-208 13-183 (291)
30 PRK00046 murB UDP-N-acetylenol 99.7 8.1E-17 1.8E-21 156.2 15.4 165 21-208 13-188 (334)
31 PRK14648 UDP-N-acetylenolpyruv 99.7 4.1E-16 8.8E-21 150.9 12.4 166 21-210 22-238 (354)
32 PRK14651 UDP-N-acetylenolpyruv 99.5 2E-13 4.3E-18 128.8 12.5 151 21-208 13-170 (273)
33 PF02913 FAD-oxidase_C: FAD li 99.4 1.2E-13 2.5E-18 131.3 1.0 230 209-478 2-248 (248)
34 PRK13904 murB UDP-N-acetylenol 99.3 2.5E-11 5.4E-16 113.5 10.9 148 20-210 10-161 (257)
35 PF08031 BBE: Berberine and be 99.1 3.6E-11 7.8E-16 82.0 1.3 33 448-480 14-47 (47)
36 TIGR02963 xanthine_xdhA xanthi 96.9 0.0063 1.4E-07 63.0 10.5 150 29-205 191-358 (467)
37 PRK09799 putative oxidoreducta 96.8 0.0035 7.6E-08 59.7 7.2 100 32-145 4-110 (258)
38 PF00941 FAD_binding_5: FAD bi 96.6 0.0027 5.8E-08 56.6 4.9 102 30-145 2-115 (171)
39 PF04030 ALO: D-arabinono-1,4- 96.5 0.0076 1.6E-07 57.6 7.5 122 346-475 128-253 (259)
40 TIGR03312 Se_sel_red_FAD proba 96.5 0.0067 1.4E-07 57.7 6.9 99 33-145 4-109 (257)
41 PLN00107 FAD-dependent oxidore 95.8 0.097 2.1E-06 48.8 10.5 133 335-476 48-197 (257)
42 PRK09971 xanthine dehydrogenas 95.6 0.012 2.6E-07 57.2 4.2 150 32-207 6-175 (291)
43 TIGR03195 4hydrxCoA_B 4-hydrox 95.0 0.027 6E-07 55.1 4.4 102 30-145 4-117 (321)
44 PLN02906 xanthine dehydrogenas 94.2 0.19 4E-06 58.9 9.2 102 30-145 228-350 (1319)
45 TIGR03199 pucC xanthine dehydr 94.1 0.055 1.2E-06 51.8 4.0 96 36-145 1-109 (264)
46 PLN00192 aldehyde oxidase 92.0 0.6 1.3E-05 54.9 9.0 106 30-145 233-352 (1344)
47 TIGR02969 mam_aldehyde_ox alde 91.1 0.41 8.8E-06 56.2 6.6 102 31-146 237-359 (1330)
48 COG1319 CoxM Aerobic-type carb 91.0 0.6 1.3E-05 44.8 6.4 103 30-145 3-117 (284)
49 COG4630 XdhA Xanthine dehydrog 89.8 0.88 1.9E-05 44.6 6.4 143 28-190 201-353 (493)
50 KOG4730 D-arabinono-1, 4-lacto 62.7 4.3 9.3E-05 41.0 1.7 26 450-476 481-506 (518)
51 TIGR00178 monomer_idh isocitra 44.2 3.1E+02 0.0068 29.3 11.3 146 36-190 308-461 (741)
52 PRK04322 peptidyl-tRNA hydrola 40.5 52 0.0011 26.9 4.4 45 17-65 37-82 (113)
53 PF03614 Flag1_repress: Repres 31.4 1.5E+02 0.0032 25.4 5.6 35 32-68 8-43 (165)
54 PF02601 Exonuc_VII_L: Exonucl 31.2 82 0.0018 30.9 5.0 51 14-65 27-87 (319)
55 COG2838 Icd Monomeric isocitra 29.4 1.1E+02 0.0025 31.5 5.5 141 40-189 315-462 (744)
56 KOG3282 Uncharacterized conser 29.2 98 0.0021 27.5 4.4 37 20-60 117-153 (190)
57 PF01981 PTH2: Peptidyl-tRNA h 26.1 1.1E+02 0.0023 25.0 4.1 46 17-66 40-86 (116)
58 cd07033 TPP_PYR_DXS_TK_like Py 26.0 88 0.0019 27.0 3.8 28 32-61 126-153 (156)
59 cd00886 MogA_MoaB MogA_MoaB fa 25.9 2.6E+02 0.0055 24.0 6.6 64 5-72 14-78 (152)
60 cd02407 PTH2_family Peptidyl-t 24.9 1.5E+02 0.0033 24.3 4.7 36 19-58 41-76 (115)
61 KOG0430 Xanthine dehydrogenase 24.5 2E+02 0.0044 33.2 6.8 101 31-146 215-332 (1257)
62 PF09330 Lact-deh-memb: D-lact 23.7 1E+02 0.0022 29.4 3.8 20 458-477 263-282 (291)
63 COG4981 Enoyl reductase domain 23.6 1.3E+02 0.0028 31.6 4.7 43 27-71 149-198 (717)
64 PRK00286 xseA exodeoxyribonucl 23.1 1.5E+02 0.0032 30.7 5.3 34 30-65 163-204 (438)
65 PRK09417 mogA molybdenum cofac 22.7 3.9E+02 0.0084 24.1 7.3 42 31-73 43-84 (193)
66 COG1570 XseA Exonuclease VII, 22.2 1.5E+02 0.0032 30.5 4.9 33 30-64 163-204 (440)
67 PF15608 PELOTA_1: PELOTA RNA 22.0 95 0.0021 24.7 2.8 35 28-64 54-89 (100)
68 COG4359 Uncharacterized conser 22.0 79 0.0017 28.3 2.6 25 42-68 78-102 (220)
69 TIGR00283 arch_pth2 peptidyl-t 20.1 1.9E+02 0.0041 23.7 4.3 42 20-65 42-84 (115)
No 1
>PLN02441 cytokinin dehydrogenase
Probab=100.00 E-value=1.1e-71 Score=566.58 Aligned_cols=469 Identities=57% Similarity=0.997 Sum_probs=421.1
Q ss_pred CCCCeecChhHHHHHhhhcCCcCCCCccEEEECCCHHHHHHHHHHHHhccCCCeEEEEcCCCCCCCCccCCCcEEEEcCC
Q 044784 4 PTDNLRTDPGAIKLASIDYGHIIKEKPFAVLYPTSVDDIRTLIYLSYNSLFSYTIAAKGQAHSTWGQAQANDGVVVQMNS 83 (482)
Q Consensus 4 ~~~~v~~~~~~~~~~~~~~~~~~~~~p~~vv~p~~~~ev~~~v~~a~~~~~~~~~~~~g~g~~~~~~~~~~~~vvidl~~ 83 (482)
+.+.+.+|+..+..+.+||+..+...|.+|++|+|++||+++|++|+++++++++++||+|||+.|++.+.+|++|||++
T Consensus 39 ~~~~v~~d~~~~~~~s~d~g~~~~~~P~aVv~P~S~eDVa~iVr~A~~~~~~~~V~~rGgGHS~~G~a~~~~GivIdms~ 118 (525)
T PLN02441 39 LDGHLSFDPVSTASASKDFGNLVHSLPAAVLYPSSVEDIASLVRAAYGSSSPLTVAARGHGHSLNGQAQAPGGVVVDMRS 118 (525)
T ss_pred cCceEEeCHHHHHHHhcCcccccCCCCCEEEeCCCHHHHHHHHHHHhhccCCceEEEECCCcCCCCCccCCCeEEEECCC
Confidence 37889999999999999999988999999999999999999999993226699999999999999988877899999999
Q ss_pred CcCc-CCCceEEEcCCCCCccEEEEcccccHHHHHHHHHhCCCccccCCCCCCccccccccccccCCCCCcCCCccccEE
Q 044784 84 LNRF-RNGTGILISGDRSSGFYADVGGEQLWIDVLNATLTRGLSPVSWTDYLYPTVGGTLSNAGISGHTYQKGPQITNVL 162 (482)
Q Consensus 84 ~~~~-~~~~~i~~~~~~~~~~~~~v~aG~~~~~l~~~l~~~g~~~~~~~~~~~~tvGG~~~~~g~g~~~~~~G~~~d~v~ 162 (482)
||++ ..+.++++|.+ ..+|+|+||++|.++.+++.++|+.|++++++..+||||+++++|+|+.+.+||..+|+|+
T Consensus 119 Ln~i~~~~~ii~vd~~---~~~VtV~aG~~~~dv~~~l~~~GlaP~~~~d~~~~TVGG~ist~G~gg~s~ryG~~~d~Vl 195 (525)
T PLN02441 119 LRGGVRGPPVIVVSGD---GPYVDVSGGELWIDVLKATLKHGLAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVL 195 (525)
T ss_pred CCCcCccCceEEEcCC---CCEEEEcCCCCHHHHHHHHHHCCCccCCccccCceEEeEEcCCCCccccccccCcHHHhEE
Confidence 9930 00004788887 5899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCeEEEecCCCCchhHHhHhcCCCCcEEEEEEEEEEeecCCceEEEEEEeCChhhHHHHHHHHHhcCCCCCCC
Q 044784 163 ELDVLTGKGEFVTCSPQKDSELFYAVLGGLGQFGIITRARIVLGPAKKRVKWLRILYSDFSSFSTDQETLISTTGPSDKV 242 (482)
Q Consensus 163 ~~~vv~~~G~~~~~~~~~~~dl~~~~~g~~g~~Giit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 242 (482)
+++||+++|++++|++++|+||||+++||+|+|||||++|+|++|.|+.+.+..+.|.+++++.++++.++.. ..+.
T Consensus 196 ~leVVtadGevv~~s~~~n~DLF~Av~GglG~fGIIT~atlrL~Pap~~v~~~~~~y~~~~~~~~d~~~li~~--~~~~- 272 (525)
T PLN02441 196 ELDVVTGKGEVVTCSPTQNSDLFFAVLGGLGQFGIITRARIALEPAPKRVRWIRVLYSDFSTFTRDQERLISR--PPEN- 272 (525)
T ss_pred EEEEEeCCceEEEeCCCCChhHHHhhccCCCCcEEEEEEEEEEEecCCceEEEEEEcCCHHHHHHHHHHHHhc--CCCC-
Confidence 9999999999999999999999999999999999999999999999998889999999999999999998872 2222
Q ss_pred CCCcccceEeec-CCCC-----CcCCcccchhhhccccccceEEEEEEEEEeCCCcc---hHHHHHHHhccccCCCCccc
Q 044784 243 MPDFLEGHLLMN-QSPL-----DFYPQSQRRKITFLVNQYGILYIIEVVTYYDNKNE---AKKVKQMLKSLKGFLPGFVF 313 (482)
Q Consensus 243 ~~e~l~~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~~ 313 (482)
..|++++..+.. ...+ ..|+..+..+++.+...++++|++++..+|++... .++.+++++.|+ +.++..+
T Consensus 273 ~~d~veg~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~le~~~~~~~~~~~~~~~~~~~ll~~L~-~~~~~~~ 351 (525)
T PLN02441 273 SFDYVEGFVIVNRNGLINNWRSSFFSPSDPVRASSLPSDGGVLYCLEVAKYYDEDTSDTVDQEVESLLKRLS-FIPGLLF 351 (525)
T ss_pred CcceEeEEEEeCCCCceeeeecccCCccccchhhccccCCceEEEEEEEEeeCCCCccchhhHHHHHHhhcC-CCCCCce
Confidence 479999988865 2111 15677777788888888899999999999987652 368889999998 8898889
Q ss_pred cccchHHHHhhhhhHHHHHHHHccCCCCCccccccccccchhhhhhHHHHHHHhhccCCCCceEEEEEccCCCCCcCcce
Q 044784 314 EKDVTYLQFLNRVHDQEIELRKKGLWDIPHPWLNIFIPKSRITDFDNGVFRNILLKRNFTSSTVLVYPLLRSKWDERMSA 393 (482)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~r~~~~~~~vp~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~g~~~~~~~~~ 393 (482)
.++++|.+|+++++..+..++..++|+.+++|+++++|.+.+.+|.+.+++.+.. ....+.+++||+...||+..++.
T Consensus 352 ~~d~~y~~fl~rv~~~e~~lr~~G~W~~phPWlnlfvp~s~i~~f~~~v~~~i~~--~~~~G~~liyP~~~~~~~~~~s~ 429 (525)
T PLN02441 352 TTDVSYVDFLDRVHVEELKLRSKGLWEVPHPWLNLFVPKSRIADFDDGVFKGILL--DGTNGPILVYPLNRSKWDNRTSA 429 (525)
T ss_pred ecccCHHHHHHhhhhHHHHHhhcCCcCCCCchhheeCcHHHHHHHHHHHHhhccc--ccCCCeEEEEecccccCCCCCcc
Confidence 9999999999999999999999999999999999999999999999999999985 33558999999999999998988
Q ss_pred eeccCCceEEEEEeeCCC---cchHHHHHHhhHHHHHHHHHcCccceecCCCCCChhhHHHhhccchhHHHHhhhcCCCC
Q 044784 394 VIAAEEEVFYFVGFLDAS---ADNWEAFDNKNKDILQFCVNAGIKFKQYLGHHATKEEWIIHFGSKWNTFQQRKTRFDPR 470 (482)
Q Consensus 394 ~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~l~~~~~~~G~~~~~y~~~~~~~~~~~~~yG~~~~~L~~iK~~~DP~ 470 (482)
+.| ++..+|.+.+.+.+ .+.++.+.+.++++++.|+..|++.+.|+++|.+.++|+.+||+.|+++.+.|++|||+
T Consensus 430 ~~P-~~~~~y~v~~l~~~~p~~~~~~~~~~~n~~i~~~~~~~g~~~k~Yl~~~~~~~~W~~HfG~~w~~f~~~K~~yDP~ 508 (525)
T PLN02441 430 VIP-DEDIFYLVALLRSALPSGDDLEHLLAQNKEILRFCEKAGIGVKQYLPHYTTQEEWKRHFGPKWETFVRRKAKFDPL 508 (525)
T ss_pred ccC-CCCeEEEEEEcCCCCCCcccHHHHHHHHHHHHHHHHHcCCceEEcCCCCCCHHHHHHHhcchHHHHHHHHhhCCch
Confidence 999 99999999998865 35788889999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcCCCC
Q 044784 471 MILSPGQRIFNY 482 (482)
Q Consensus 471 nifnpgk~i~~~ 482 (482)
+||.|||.|+++
T Consensus 509 ~iL~pgq~if~~ 520 (525)
T PLN02441 509 AILSPGQRIFNR 520 (525)
T ss_pred hhcCCCCccCCC
Confidence 999999999864
No 2
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=100.00 E-value=1.1e-61 Score=462.83 Aligned_cols=443 Identities=46% Similarity=0.804 Sum_probs=373.4
Q ss_pred CCCCeecChhHHHHHhhhcCCcCCCCccEEEECCCHHHHHHHHHHHHhccC--CCeEEEEcCCCCCCCCccC-CCcEEEE
Q 044784 4 PTDNLRTDPGAIKLASIDYGHIIKEKPFAVLYPTSVDDIRTLIYLSYNSLF--SYTIAAKGQAHSTWGQAQA-NDGVVVQ 80 (482)
Q Consensus 4 ~~~~v~~~~~~~~~~~~~~~~~~~~~p~~vv~p~~~~ev~~~v~~a~~~~~--~~~~~~~g~g~~~~~~~~~-~~~vvid 80 (482)
+.+.+.+++.......++|+......|.+|+.|+|+|||++++|.| +.. .+|+.+||+|||+.|++.+ .+|+||.
T Consensus 38 ~~~~~~~~~~~~a~~s~dFg~~~~~~P~aVL~P~S~edVs~ilk~~--~~~~s~~pVaarG~GhSl~Gqa~a~~~GvvV~ 115 (505)
T KOG1231|consen 38 LEGTLESDPSSVAHASTDFGNRTQLPPLAVLFPSSVEDVSKILKHC--NDYGSNFPVAARGGGHSLEGQALATRGGVVVC 115 (505)
T ss_pred ccceeeccchhhhhhhhhccccCCCCCeeEEcCCCHHHHHHHHHHH--hccCCcceeeccCCcccccCccccCCCCeEEE
Confidence 5666777888889999999998888999999999999999999999 566 8999999999999999988 8998877
Q ss_pred cCC---CcCcCCCceEEEcCCCCCccEEEEcccccHHHHHHHHHhCCCccccCCCCCCccccccccccccCCCCCcCCCc
Q 044784 81 MNS---LNRFRNGTGILISGDRSSGFYADVGGEQLWIDVLNATLTRGLSPVSWTDYLYPTVGGTLSNAGISGHTYQKGPQ 157 (482)
Q Consensus 81 l~~---~~~~~~~~~i~~~~~~~~~~~~~v~aG~~~~~l~~~l~~~g~~~~~~~~~~~~tvGG~~~~~g~g~~~~~~G~~ 157 (482)
|+. |+ +.-.+..++ ..+.|+||..|-+|.+++.++|++|..+.++...||||.++++|+|+.+++||..
T Consensus 116 m~~~~~~~-----~~~~~~~~~---~yvdV~~g~~Widll~~t~e~GL~p~swtDyl~ltVGGtlsnagiggqafRyGpq 187 (505)
T KOG1231|consen 116 MDSSLLMK-----DVPVLVVDD---LYVDVSAGTLWIDLLDYTLEYGLSPFSWTDYLPLTVGGTLSNAGIGGQAFRYGPQ 187 (505)
T ss_pred EehhhccC-----CCceeeccc---ceEEeeCChhHHHHHHHHHHcCCCccCcCCccceeecceeccCccccceeeccch
Confidence 765 33 233444553 8999999999999999999999999988888889999999999999999999999
Q ss_pred cccEEEEEEEecCCeEEEecCCCCchhHHhHhcCCCCcEEEEEEEEEEeecCCceEEEEEEeCChhhHHHHHHHHHhcCC
Q 044784 158 ITNVLELDVLTGKGEFVTCSPQKDSELFYAVLGGLGQFGIITRARIVLGPAKKRVKWLRILYSDFSSFSTDQETLISTTG 237 (482)
Q Consensus 158 ~d~v~~~~vv~~~G~~~~~~~~~~~dl~~~~~g~~g~~Giit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 237 (482)
.+||++++||+++|++++|++..|++||.++.||+|+|||||+++++|+|+|.+-+.. ++...+
T Consensus 188 i~NV~~LdVVtgkGeiv~cs~r~n~~lf~~vlGglGqfGIITrArI~le~aP~~dQe~----------------lis~~~ 251 (505)
T KOG1231|consen 188 ISNVIELDVVTGKGEIVTCSKRANSNLFFLVLGGLGQFGIITRARIKLEPAPKRDQER----------------LISVCG 251 (505)
T ss_pred hhceEEEEEEcCCCcEEecccccCceeeeeeeccCcceeeEEEEEEEeccCCccchHH----------------hhhhhc
Confidence 9999999999999999999999999999999999999999999999999999641111 111100
Q ss_pred CCCCCCCCcccceEeec-CCC-----CCcCCcccchhhhccccccceEEEEEEEEEeCCCcc---hHHHHHHHhccccCC
Q 044784 238 PSDKVMPDFLEGHLLMN-QSP-----LDFYPQSQRRKITFLVNQYGILYIIEVVTYYDNKNE---AKKVKQMLKSLKGFL 308 (482)
Q Consensus 238 ~~~~~~~e~l~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~ 308 (482)
.++++.+..++. ... ...|+..+..+++.+..++...+++++..||+..+. ..++..+.+.+. ..
T Consensus 252 -----~fd~veg~~~~~~~gl~~n~r~s~f~l~D~~~i~~~~~~~~~~yclev~ky~d~~e~pti~~e~~~l~~~l~-~~ 325 (505)
T KOG1231|consen 252 -----SFDTVEGAAIVARNGLQSNIRVSRFELLDEVQIAAINSDHSTNYCLEVAKYYDLTEAPTLFQEIGGLSEKLN-YA 325 (505)
T ss_pred -----CCcchhhhhhhhhccccccceeeccccCcHHHHHHHHhcCCeeeeeehhhccCcccCchHHHHHhccchhhh-cc
Confidence 123333322222 000 123455555677788888889999999999987653 456777777777 77
Q ss_pred CCccccccchHHHHhhhhhHHHHHHHHccCCCCCccccccccccchhhhhhHHHHHHHhhccCCCCceEEEEEccCC-CC
Q 044784 309 PGFVFEKDVTYLQFLNRVHDQEIELRKKGLWDIPHPWLNIFIPKSRITDFDNGVFRNILLKRNFTSSTVLVYPLLRS-KW 387 (482)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~r~~~~~~~vp~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~g~-~~ 387 (482)
++..+..+++|.++++++++.++..+..++|+.|++|...++|.+++.+|.+.++..++ .+..++++++|+..-. +|
T Consensus 326 ~~~~~~~~v~y~~fldrv~~ae~klrskgLWevphpWlnL~vpks~i~~fa~gv~~dIl--~~~s~g~~liyptnk~~kw 403 (505)
T KOG1231|consen 326 PTFIVEQDVQYHDFLDRVHFAEDKLRSKGLWEVPHPWLNLAVPKSRISDFARGVFTDIL--VPNSSGPVLIYPTNKDLKW 403 (505)
T ss_pred chhhhhhhhHHHHhhhHhhhcccchhhcccccCCCchheeecccccchhhhhhhcccee--eccCCCceEEeccccCcch
Confidence 88888899999999999999999999999999999999999999999999998888888 4667789999999877 78
Q ss_pred CcCcceeecc-CCceEEEEEeeC-CCcchHHHHHHhhHHHHHHHHHcCccceecCCCCCChhhHHHhhccchhHHHHhhh
Q 044784 388 DERMSAVIAA-EEEVFYFVGFLD-ASADNWEAFDNKNKDILQFCVNAGIKFKQYLGHHATKEEWIIHFGSKWNTFQQRKT 465 (482)
Q Consensus 388 ~~~~~~~~~~-~~~~~~~i~~~~-~~~~~~~~~~~~~~~l~~~~~~~G~~~~~y~~~~~~~~~~~~~yG~~~~~L~~iK~ 465 (482)
+..++++-|+ ++..||.+.+.. ..++.++...++++++++.|.++|+....|+.++...++|.+.||+++.++.++|.
T Consensus 404 ~~~~sav~ph~~e~vFy~v~~l~s~~~~~~e~~~~~n~riv~fc~~ag~~~keyl~~~~~~e~w~~hfG~~w~~f~~~K~ 483 (505)
T KOG1231|consen 404 SNRLSAVTPHAGEGVFYLVILLRSSGKEEHEELEQLNDRIVKFCLAAGTCTKEYLPHYGKREYWVEHFGEKWVDFMRIKK 483 (505)
T ss_pred hhhhccccccCCCceEEEEEEecCCCchhHHHHHHHHHHHHHHHHHcCcChhhhcCCcccHHHHHHHhChhHHHHHHHHh
Confidence 8887776665 444555555555 44678999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCcCC
Q 044784 466 RFDPRMILSPGQRIF 480 (482)
Q Consensus 466 ~~DP~nifnpgk~i~ 480 (482)
+|||+.||||||.||
T Consensus 484 ~~DPk~Il~PGq~If 498 (505)
T KOG1231|consen 484 AYDPKRILNPGQRIF 498 (505)
T ss_pred hcCHHHhcCCccccc
Confidence 999999999999997
No 3
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=100.00 E-value=5e-53 Score=436.97 Aligned_cols=426 Identities=15% Similarity=0.155 Sum_probs=310.1
Q ss_pred CCCCeecChhHHHHHhhhcCCcC--CCCccEEEECCCHHHHHHHHHHHHhccCCCeEEEEcCCCCCCCCccC-CCcEEEE
Q 044784 4 PTDNLRTDPGAIKLASIDYGHII--KEKPFAVLYPTSVDDIRTLIYLSYNSLFSYTIAAKGQAHSTWGQAQA-NDGVVVQ 80 (482)
Q Consensus 4 ~~~~v~~~~~~~~~~~~~~~~~~--~~~p~~vv~p~~~~ev~~~v~~a~~~~~~~~~~~~g~g~~~~~~~~~-~~~vvid 80 (482)
+.++|.+|+.....|..||.... ...|.+|++|.|++||+++|++| +++++|+++||||||+.|.+.+ .+|++||
T Consensus 106 l~~~v~~~~~~~~~y~~d~~~~~~~~~~P~~Vv~P~s~eeV~~ivk~a--~~~~ipv~prGgGts~~G~~~~~~ggivId 183 (555)
T PLN02805 106 LQDNMTLDYDERYFHGKPQNSFHKAVNIPDVVVFPRSEEEVSKIVKSC--NKYKVPIVPYGGATSIEGHTLAPHGGVCID 183 (555)
T ss_pred cCCceecCHHHHHHhccCcccccccCCCCCEEEEcCCHHHHHHHHHHH--HHCCCcEEEECCCCCCCCCccCCCCEEEEE
Confidence 45678888888888888875322 25799999999999999999999 7999999999999999988765 5799999
Q ss_pred cCCCcCcCCCceEEEcCCCCCccEEEEcccccHHHHHHHHHhCCCccccCCCCCCccccccccccccCCCCCcCCCcccc
Q 044784 81 MNSLNRFRNGTGILISGDRSSGFYADVGGEQLWIDVLNATLTRGLSPVSWTDYLYPTVGGTLSNAGISGHTYQKGPQITN 160 (482)
Q Consensus 81 l~~~~~~~~~~~i~~~~~~~~~~~~~v~aG~~~~~l~~~l~~~g~~~~~~~~~~~~tvGG~~~~~g~g~~~~~~G~~~d~ 160 (482)
|++|| +++++|+++ ++++||||+++.+|.++|.++|+.++..|+ +.+||||+++++++|..+.+||.++|+
T Consensus 184 l~~mn-----~I~~id~~~---~~vtVeaGv~~~~L~~~L~~~Gl~~p~~p~-~~~TIGG~ia~n~~G~~s~~yG~~~d~ 254 (555)
T PLN02805 184 MSLMK-----SVKALHVED---MDVVVEPGIGWLELNEYLEPYGLFFPLDPG-PGATIGGMCATRCSGSLAVRYGTMRDN 254 (555)
T ss_pred ccCCC-----CeEEEeCCC---CEEEEeCCcCHHHHHHHHHHcCCEeCCCCc-cccChhhHhhCCCcccccCccccHHHh
Confidence 99999 488999984 899999999999999999999999665565 568999999999999999999999999
Q ss_pred EEEEEEEecCCeEEEecCC-----CCchhHHhHhcCCCCcEEEEEEEEEEeecCCceEEEEEEeCChhhHHHHHHHHHhc
Q 044784 161 VLELDVLTGKGEFVTCSPQ-----KDSELFYAVLGGLGQFGIITRARIVLGPAKKRVKWLRILYSDFSSFSTDQETLIST 235 (482)
Q Consensus 161 v~~~~vv~~~G~~~~~~~~-----~~~dl~~~~~g~~g~~Giit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (482)
|++++||++||++++++.. .++||+|+++||+|+|||||+++||++|.|+......+.|++++++.+++..++..
T Consensus 255 V~~levVl~dG~iv~~~~~~~k~~~g~dL~~l~~GseGtLGIIT~~tlrl~p~P~~~~~~~~~f~~~~~a~~av~~i~~~ 334 (555)
T PLN02805 255 VISLKVVLPNGDVVKTASRARKSAAGYDLTRLVIGSEGTLGVITEVTLRLQKIPQHSVVAMCNFPTIKDAADVAIATMLS 334 (555)
T ss_pred EEEEEEEcCCceEEEecCccccCCCCccHHHHhccCCCceEEEEEEEEEeecCCcceEEEEEEcCCHHHHHHHHHHHHhC
Confidence 9999999999999987432 46899999999999999999999999999998877888999999999999888765
Q ss_pred CCCCCCCCCCcccceEeecCCCCCcCCcccchhhhccccccceEEEEEEEEEeCCCcc----hHHHHHHHhccccCCCCc
Q 044784 236 TGPSDKVMPDFLEGHLLMNQSPLDFYPQSQRRKITFLVNQYGILYIIEVVTYYDNKNE----AKKVKQMLKSLKGFLPGF 311 (482)
Q Consensus 236 ~g~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~ 311 (482)
+..|. ++|++|...+.. ...+... .+|. .+.++++ +.+.++. .+.+.++++... ...
T Consensus 335 -g~~ps-a~ElmD~~~~~~---~~~~~~~------~~p~--~~~Ll~e---~~g~~~~~~~~~~~~~~i~~~~g---~~~ 395 (555)
T PLN02805 335 -GIQVS-RVELLDEVQIRA---INMANGK------NLPE--APTLMFE---FIGTEAYAREQTLIVQKIASKHN---GSD 395 (555)
T ss_pred -CCCcE-EEEEECHHHHHH---HHHhcCC------CCCc--ceEEEEE---EecCcHHHHHHHHHHHHHHHhCC---Cce
Confidence 56666 788888754311 0000000 1221 2444443 4444321 122233333222 110
Q ss_pred cccccch--HHH-HhhhhhHHHHHHHHccCCCCC--ccccccccccchhhhhhHHHHHHHhhccCCCCceEEEEEccCCC
Q 044784 312 VFEKDVT--YLQ-FLNRVHDQEIELRKKGLWDIP--HPWLNIFIPKSRITDFDNGVFRNILLKRNFTSSTVLVYPLLRSK 386 (482)
Q Consensus 312 ~~~~~~~--~~~-~~~~~~~~~~~~~~~~~w~~r--~~~~~~~vp~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~g~~ 386 (482)
.....-+ ... |..+ ............. .-..++.+|.++++++++++ +.+.+ +
T Consensus 396 ~~~a~~~~e~~~lW~~R----~~~~~~~~~~~~~~~~~~~DvaVP~s~L~e~i~~~-~~~~~-----------------~ 453 (555)
T PLN02805 396 FVFAEEPEAKKELWKIR----KEALWACFAMEPKYEAMITDVCVPLSHLAELISRS-KKELD-----------------A 453 (555)
T ss_pred EEEeCCHHHHHHHHHHH----HHHHHHHhhcCCCCceeEEEEEEEHHHHHHHHHHH-HHHHH-----------------H
Confidence 0000000 000 1111 0001100000100 11357899999999999986 66665 3
Q ss_pred CCcCcceeecc-CCceEEEEEeeCCCcchHHHHHHhhHHHHHHHHHcCccceecCCCCCChhhH-HHhhcc-chhHHHHh
Q 044784 387 WDERMSAVIAA-EEEVFYFVGFLDASADNWEAFDNKNKDILQFCVNAGIKFKQYLGHHATKEEW-IIHFGS-KWNTFQQR 463 (482)
Q Consensus 387 ~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~y~~~~~~~~~~-~~~yG~-~~~~L~~i 463 (482)
++.....++|+ ||++|+++.++...++..+++.+..+++++.+.++|+....-......+.+| ..+||+ .++.|++|
T Consensus 454 ~~~~~~~~gHaGdGnlH~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~gGsiSgEHGiG~~k~~~l~~~~g~~~~~lm~~I 533 (555)
T PLN02805 454 SPLVCTVIAHAGDGNFHTIILFDPSQEDQRREAERLNHFMVHTALSMEGTCTGEHGVGTGKMKYLEKELGIEALQTMKRI 533 (555)
T ss_pred cCCeEEEEEEcCCCcEEEEeccCCCCHHHHHHHHHHHHHHHHHHHHcCCeEeEECCCChhHHHHHHHhcCHHHHHHHHHH
Confidence 34445677888 9999998877654444556667778888888888765422222222335566 788885 89999999
Q ss_pred hhcCCCCCCCCCCCcCCC
Q 044784 464 KTRFDPRMILSPGQRIFN 481 (482)
Q Consensus 464 K~~~DP~nifnpgk~i~~ 481 (482)
|+.|||+|||||||++++
T Consensus 534 K~a~DP~gILNPGKi~~~ 551 (555)
T PLN02805 534 KKALDPNNIMNPGKLIPP 551 (555)
T ss_pred HHHhCcCcCCCCCceeCc
Confidence 999999999999999865
No 4
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=100.00 E-value=9.6e-52 Score=425.72 Aligned_cols=427 Identities=16% Similarity=0.218 Sum_probs=311.0
Q ss_pred CCeecChhHHHHHhhhcCCcCCCCccEEEECCCHHHHHHHHHHHHhccCCCeEEEEcCCCCCCCCccC-CCcEEEEcCCC
Q 044784 6 DNLRTDPGAIKLASIDYGHIIKEKPFAVLYPTSVDDIRTLIYLSYNSLFSYTIAAKGQAHSTWGQAQA-NDGVVVQMNSL 84 (482)
Q Consensus 6 ~~v~~~~~~~~~~~~~~~~~~~~~p~~vv~p~~~~ev~~~v~~a~~~~~~~~~~~~g~g~~~~~~~~~-~~~vvidl~~~ 84 (482)
++|.+|+.....|.+|+...+...|.+|++|.|++||+++|++| +++++|+++||+||++.+.+.+ .+|++|||++|
T Consensus 32 ~~v~~~~~~~~~y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a--~~~~ipv~~rG~Gt~~~gg~~~~~~gividl~~l 109 (499)
T PRK11230 32 LEILHTDEELIPYECDGLSAYRTRPLLVVLPKQMEQVQALLAVC--HRLRVPVVARGAGTGLSGGALPLEKGVLLVMARF 109 (499)
T ss_pred ceEEcCHHHHHHhccCcccccCCCCCEEEeeCCHHHHHHHHHHH--HHcCCeEEEECCCcCcCCCcccCCCcEEEEcccC
Confidence 36888999999999998666778999999999999999999999 7999999999999999877765 47899999999
Q ss_pred cCcCCCceEEEcCCCCCccEEEEcccccHHHHHHHHHhCCCc-cccCCCCCCccccccccccccCCCCCcCCCccccEEE
Q 044784 85 NRFRNGTGILISGDRSSGFYADVGGEQLWIDVLNATLTRGLS-PVSWTDYLYPTVGGTLSNAGISGHTYQKGPQITNVLE 163 (482)
Q Consensus 85 ~~~~~~~~i~~~~~~~~~~~~~v~aG~~~~~l~~~l~~~g~~-~~~~~~~~~~tvGG~~~~~g~g~~~~~~G~~~d~v~~ 163 (482)
| +++++|+++ ++++||||+++.+|.++|.++|+. ++.+++...+||||++++|+.|..+.+||.+.|+|++
T Consensus 110 n-----~I~~id~~~---~~v~VeaGv~~~~L~~~l~~~Gl~~~~~p~s~~~~tvGG~ia~nagG~~~~~yG~~~d~v~~ 181 (499)
T PRK11230 110 N-----RILDINPVG---RRARVQPGVRNLAISQAAAPHGLYYAPDPSSQIACSIGGNVAENAGGVHCLKYGLTVHNLLK 181 (499)
T ss_pred C-----CceEEcCCC---CEEEEcCCccHHHHHHHHHHcCCeeCCCCCccccceEcceeccCCCCccceeeCChhhheeE
Confidence 9 478999984 899999999999999999999998 5555566678999999999999999999999999999
Q ss_pred EEEEecCCeEEEecCC----CCchhHHhHhcCCCCcEEEEEEEEEEeecCCceEEEEEEeCChhhHHHHHHHHHhcCCCC
Q 044784 164 LDVLTGKGEFVTCSPQ----KDSELFYAVLGGLGQFGIITRARIVLGPAKKRVKWLRILYSDFSSFSTDQETLISTTGPS 239 (482)
Q Consensus 164 ~~vv~~~G~~~~~~~~----~~~dl~~~~~g~~g~~Giit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 239 (482)
++||++||++++++.. .++||+|+++||+|+|||||++|||++|.|+....+.+.|++++++.+.+..+... +..
T Consensus 182 levVl~~G~i~~~~~~~~~~~g~dl~~l~~Gs~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~~~-~~~ 260 (499)
T PRK11230 182 VEILTLDGEALTLGSDALDSPGFDLLALFTGSEGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDIIAA-GII 260 (499)
T ss_pred EEEEcCCCcEEEeCCccCCCCccchHhhhccCCCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHHHhc-CCC
Confidence 9999999999999754 47899999999999999999999999999998878888999999999999888775 565
Q ss_pred CCCCCCcccceEeecCCCCCcCCcccchhhhccccccceEEEEEEEEEeCCCcc----hHHHHHHHhccccCCCCccccc
Q 044784 240 DKVMPDFLEGHLLMNQSPLDFYPQSQRRKITFLVNQYGILYIIEVVTYYDNKNE----AKKVKQMLKSLKGFLPGFVFEK 315 (482)
Q Consensus 240 ~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~~~~ 315 (482)
|. .+|++|...+... ..+... ..|.+...+++++ +++.+.. .+.+.++++.... ........
T Consensus 261 p~-~~el~d~~~~~~~---~~~~~~------~~p~~~~~~ll~e---~~g~~~~v~~~~~~l~~~~~~~g~-~~~~~a~~ 326 (499)
T PRK11230 261 PG-GLEMMDNLSIRAA---EDFIHA------GYPVDAEAILLCE---LDGVESDVQEDCERVNDILLKAGA-TDVRLAQD 326 (499)
T ss_pred cE-EEEeeCHHHHHHH---HHhcCC------CCCCCcceEEEEE---ecCCchHHHHHHHHHHHHHHhcCC-ceEEEeCC
Confidence 65 6788876543110 000000 1222233443333 4444321 1233333333320 00000000
Q ss_pred cchHH-HHhhhhhHHHHHHHHccCCCCCccccccccccchhhhhhHHHHHHHhhccCCCCceEEEEEccCCCCCcCccee
Q 044784 316 DVTYL-QFLNRVHDQEIELRKKGLWDIPHPWLNIFIPKSRITDFDNGVFRNILLKRNFTSSTVLVYPLLRSKWDERMSAV 394 (482)
Q Consensus 316 ~~~~~-~~~~~~~~~~~~~~~~~~w~~r~~~~~~~vp~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~g~~~~~~~~~~ 394 (482)
..... -|..+..... ..... .......++.+|.+.++++++++ +.+.+ +.+.....+
T Consensus 327 ~~~~~~~W~~R~~~~~-~~~~~---~~~~~~~dv~vP~~~l~~~~~~~-~~~~~-----------------~~~~~~~~~ 384 (499)
T PRK11230 327 EAERVRFWAGRKNAFP-AVGRI---SPDYYCMDGTIPRRELPGVLEGI-ARLSQ-----------------QYGLRVANV 384 (499)
T ss_pred HHHHHHHHHHHHhhHH-HHHhh---CCCeeEEeecCChHHHHHHHHHH-HHHHH-----------------HcCCeEEEE
Confidence 00000 1111111111 11110 00111246789999999999976 66665 233446678
Q ss_pred ecc-CCceEEEEEeeCCCcchHHHHHHhhHHHHHHHHHcCcc-ceecCCCCCChhhH-HHhhcc-chhHHHHhhhcCCCC
Q 044784 395 IAA-EEEVFYFVGFLDASADNWEAFDNKNKDILQFCVNAGIK-FKQYLGHHATKEEW-IIHFGS-KWNTFQQRKTRFDPR 470 (482)
Q Consensus 395 ~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~-~~~y~~~~~~~~~~-~~~yG~-~~~~L~~iK~~~DP~ 470 (482)
+|+ +|++|+++.+....+...++..+..+++++.+.+.|+. ...|-.. ....+| ...||+ .++.|++||+.|||+
T Consensus 385 gH~GdGn~H~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~GG~is~EHGiG-~~k~~~l~~~~g~~~~~~m~~IK~~fDP~ 463 (499)
T PRK11230 385 FHAGDGNMHPLILFDANEPGELERAEALGGKILELCVEVGGSITGEHGVG-REKINQMCAQFNSDEITLFHAVKAAFDPD 463 (499)
T ss_pred EEeCCCcceeeecCCCCCHHHHHHHHHHHHHHHHHHHHcCCeEeeeccCc-hhhHHHHHHhcCHHHHHHHHHHHHHcCCC
Confidence 888 99999987765543333455567777888888887655 2233222 224455 788884 899999999999999
Q ss_pred CCCCCCCcCC
Q 044784 471 MILSPGQRIF 480 (482)
Q Consensus 471 nifnpgk~i~ 480 (482)
|||||||.|.
T Consensus 464 ~iLNPGk~~~ 473 (499)
T PRK11230 464 GLLNPGKNIP 473 (499)
T ss_pred cCCCCCeEeC
Confidence 9999999884
No 5
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=100.00 E-value=1.2e-47 Score=389.65 Aligned_cols=399 Identities=17% Similarity=0.210 Sum_probs=280.0
Q ss_pred EEECCCHHHHHHHHHHHHhccCCCeEEEEcCCCCCCCCccC-CCcEEEEcCCCcCcCCCceEEEcCCCCCccEEEEcccc
Q 044784 33 VLYPTSVDDIRTLIYLSYNSLFSYTIAAKGQAHSTWGQAQA-NDGVVVQMNSLNRFRNGTGILISGDRSSGFYADVGGEQ 111 (482)
Q Consensus 33 vv~p~~~~ev~~~v~~a~~~~~~~~~~~~g~g~~~~~~~~~-~~~vvidl~~~~~~~~~~~i~~~~~~~~~~~~~v~aG~ 111 (482)
|++|.|++||+++|++| +++++|++++|+|||+.|.+.+ .++++|||++|| +++++|+++ ++++||||+
T Consensus 1 Vv~P~s~eev~~iv~~a--~~~~i~v~~~G~Gt~~~g~~~~~~~~vvidl~~mn-----~i~~id~~~---~~v~veaGv 70 (413)
T TIGR00387 1 VVFPKNTEQVARILKLC--HEHRIPIVPRGAGTGLSGGALPEEGGLVLVFKHMN-----KILEIDVVN---LTAVVQPGV 70 (413)
T ss_pred CCCCCCHHHHHHHHHHH--HHcCCcEEEECCCCCCCCCccCCCCeEEEEhHHcC-----ceeEEcCCC---CEEEEcCCc
Confidence 67899999999999999 7999999999999999877665 468999999999 478999984 899999999
Q ss_pred cHHHHHHHHHhCCCcc-ccCCCCCCccccccccccccCCCCCcCCCccccEEEEEEEecCCeEEEecCC-----CCchhH
Q 044784 112 LWIDVLNATLTRGLSP-VSWTDYLYPTVGGTLSNAGISGHTYQKGPQITNVLELDVLTGKGEFVTCSPQ-----KDSELF 185 (482)
Q Consensus 112 ~~~~l~~~l~~~g~~~-~~~~~~~~~tvGG~~~~~g~g~~~~~~G~~~d~v~~~~vv~~~G~~~~~~~~-----~~~dl~ 185 (482)
++.+|.++|.++|+.+ +.+++...+||||++++|+.|..+.+||.++|+|++++||++||++++++.. .++||+
T Consensus 71 ~~~~l~~~l~~~gl~~~~~p~s~~~~tiGG~ia~na~G~~~~~yG~~~d~v~~l~vV~~~G~~~~~~~~~~~~~~g~dl~ 150 (413)
T TIGR00387 71 RNLELEQAVEEHNLFYPPDPSSQISSTIGGNIAENAGGMRGLKYGTTVDYVLGLEVVTADGEILRIGGKTAKDVAGYDLT 150 (413)
T ss_pred cHHHHHHHHHHcCCeeCCCCcccccceehhhhhcCCCCCcceeeccHHhheeeEEEEeCCCCEEEeCCcccCCCCCCChh
Confidence 9999999999999985 4555556789999999999998999999999999999999999999998643 467999
Q ss_pred HhHhcCCCCcEEEEEEEEEEeecCCceEEEEEEeCChhhHHHHHHHHHhcCCCCCCCCCCcccceEeecCCCCCcCCccc
Q 044784 186 YAVLGGLGQFGIITRARIVLGPAKKRVKWLRILYSDFSSFSTDQETLISTTGPSDKVMPDFLEGHLLMNQSPLDFYPQSQ 265 (482)
Q Consensus 186 ~~~~g~~g~~Giit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~e~l~~~~~~~~~~~~~~~~~~ 265 (482)
+++.|++|+|||||+++||++|.|+......+.|++++++.+++..+++. ++.|. ++|++|...+... ..+...
T Consensus 151 ~l~~Gs~GtlGiit~~~lkl~p~p~~~~~~~~~f~~~~~~~~~~~~~~~~-~~~p~-a~el~d~~~~~~~---~~~~~~- 224 (413)
T TIGR00387 151 GLFVGSEGTLGIVTEATLKLLPKPENIVVALAFFDSIEKAMQAVYDIIAA-GIIPA-GMEFLDNLSIKAV---EDISGI- 224 (413)
T ss_pred hhcccCCccceEEEEEEEEeecCCCccEEEEEECCCHHHHHHHHHHHHhc-CCCcE-EEEccCHHHHHHH---HHhcCC-
Confidence 99999999999999999999999998777888999999999999888775 56666 6788776543110 000000
Q ss_pred chhhhccccccceEEEEEEEEEeCCCcc-hHHHHHHHhccccCCCCcccc-c-cchHHH-HhhhhhHHHHHHHHccCCCC
Q 044784 266 RRKITFLVNQYGILYIIEVVTYYDNKNE-AKKVKQMLKSLKGFLPGFVFE-K-DVTYLQ-FLNRVHDQEIELRKKGLWDI 341 (482)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~~~-~-~~~~~~-~~~~~~~~~~~~~~~~~w~~ 341 (482)
.+|......+++ .+++..++ .+..+++.+-+...+...... . .-.... |..+..... ...... .
T Consensus 225 -----~~p~~~~~~l~v---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~r~~~~~-~~~~~~---~ 292 (413)
T TIGR00387 225 -----GLPKDAGAILLV---EIDGVHEAVERDEEKIEQICRKNGAVDVQIAQDEEERALLWAGRRNAFK-AASKLS---P 292 (413)
T ss_pred -----CCCCCCceEEEE---EecCCcHHHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHHHHHhHH-HHHhhC---C
Confidence 123222333333 34444321 112222222222111110000 0 000111 111111011 111110 1
Q ss_pred CccccccccccchhhhhhHHHHHHHhhccCCCCceEEEEEccCCCCCcCcceeecc-CCceEEEEEeeCCCcchHHHHHH
Q 044784 342 PHPWLNIFIPKSRITDFDNGVFRNILLKRNFTSSTVLVYPLLRSKWDERMSAVIAA-EEEVFYFVGFLDASADNWEAFDN 420 (482)
Q Consensus 342 r~~~~~~~vp~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~ 420 (482)
...+.++.+|.+.+.++++.+ +++.. +.+.....++|+ ++++|+.+.+...+++..++..+
T Consensus 293 ~~~~~d~~vp~~~l~~~~~~~-~~~~~-----------------~~~~~~~~~gH~g~g~lh~~~~~~~~~~~~~~~~~~ 354 (413)
T TIGR00387 293 LYLIEDGTVPRSKLPEALRGI-ADIAR-----------------KYDFTIANFGHAGDGNLHPTILTDPEDKGEMERVEE 354 (413)
T ss_pred CcceeEEecCHHHHHHHHHHH-HHHHH-----------------HcCCeEEEEEEecCCccccccCCCCCCHHHHHHHHH
Confidence 112457899999999999976 66554 223334556777 88999877665443344555567
Q ss_pred hhHHHHHHHHHcCccceecCCCCCChhhH-HHhhcc-chhHHHHhhhcCCCCCCCCCCC
Q 044784 421 KNKDILQFCVNAGIKFKQYLGHHATKEEW-IIHFGS-KWNTFQQRKTRFDPRMILSPGQ 477 (482)
Q Consensus 421 ~~~~l~~~~~~~G~~~~~y~~~~~~~~~~-~~~yG~-~~~~L~~iK~~~DP~nifnpgk 477 (482)
..+++.+.+.++|+...........+.+| ...||+ .++.|++||+.|||+|||||||
T Consensus 355 ~~~~~~~~~~~~gG~is~eHG~G~~r~~~~~~~~~~~~~~~~~~iK~~fDP~~ilNPGk 413 (413)
T TIGR00387 355 AGGEIFELAIELGGTISGEHGIGVVKAEFMPYKFNEKELETMRAIKKAFDPDNILNPGK 413 (413)
T ss_pred HHHHHHHHHHHcCCEEEEeccCcHhHHHHHHHhcCHHHHHHHHHHHHHcCcCcCCCCcC
Confidence 77888888888665422222222224456 667774 8999999999999999999997
No 6
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=1.7e-44 Score=374.66 Aligned_cols=433 Identities=19% Similarity=0.204 Sum_probs=293.7
Q ss_pred eecChhHHHHHhhhcCCcCCCCccEEEECCCHHHHHHHHHHHHhccCCCeEEEEcCCCCCCCCccCCCcEEEEcCCCcCc
Q 044784 8 LRTDPGAIKLASIDYGHIIKEKPFAVLYPTSVDDIRTLIYLSYNSLFSYTIAAKGQAHSTWGQAQANDGVVVQMNSLNRF 87 (482)
Q Consensus 8 v~~~~~~~~~~~~~~~~~~~~~p~~vv~p~~~~ev~~~v~~a~~~~~~~~~~~~g~g~~~~~~~~~~~~vvidl~~~~~~ 87 (482)
+.+++.....+..+|+ .....|.+|+.|+|++||+++|++| +++++|+++||+|||+.|.+.+.+|++|||++||+
T Consensus 11 ~~~~~~~~~~~~~d~~-~~~~~p~~v~~p~s~~eV~~iv~~a--~~~~~~v~prG~gts~~g~~~~~~gvvl~l~~mn~- 86 (459)
T COG0277 11 VLTDPADRAAYRTDAS-VYRGLPLAVVFPKSEEEVAAILRLA--NENGIPVVPRGGGTSLSGGAVPDGGVVLDLSRLNR- 86 (459)
T ss_pred eecCHHHHhhccCCcc-hhcCCCCEEEccCCHHHHHHHHHHH--HHcCCeEEEECCCCCccccccCCCcEEEEchhhcc-
Confidence 6678888889999998 4778899999999999999999999 79999999999999999888774499999999994
Q ss_pred CCCceEEEcCCCCCccEEEEcccccHHHHHHHHHhCCCccccCCCCC-CccccccccccccCCCCCcCCCccccEEEEEE
Q 044784 88 RNGTGILISGDRSSGFYADVGGEQLWIDVLNATLTRGLSPVSWTDYL-YPTVGGTLSNAGISGHTYQKGPQITNVLELDV 166 (482)
Q Consensus 88 ~~~~~i~~~~~~~~~~~~~v~aG~~~~~l~~~l~~~g~~~~~~~~~~-~~tvGG~~~~~g~g~~~~~~G~~~d~v~~~~v 166 (482)
++++|+++ ++++||||+++.+|.++|.++|+.++..|++. .+||||++++|++|..+.+||.+.|+|+++++
T Consensus 87 ----i~~id~~~---~~~~v~aGv~l~~l~~~l~~~G~~~p~~p~s~~~~tIGG~ia~~~~G~~~~~yG~~~d~v~~l~v 159 (459)
T COG0277 87 ----ILEIDPED---GTATVQAGVTLEDLEKALAPHGLFLPVDPSSSGTATIGGNIATNAGGLRSLRYGLTRDNVLGLRV 159 (459)
T ss_pred ----hhccCcCC---CEEEEcCCccHHHHHHHHHHcCCccCCCccccccceEccchhcCCCCccceecccHHHheeEEEE
Confidence 77999985 99999999999999999999999977777665 89999999999999999999999999999999
Q ss_pred EecCCeEEEecCC-----CCchhHHhHhcCCCCcEEEEEEEEEEeecCCceEEEEEEeCChhhHHHHHHHHH---hcCCC
Q 044784 167 LTGKGEFVTCSPQ-----KDSELFYAVLGGLGQFGIITRARIVLGPAKKRVKWLRILYSDFSSFSTDQETLI---STTGP 238 (482)
Q Consensus 167 v~~~G~~~~~~~~-----~~~dl~~~~~g~~g~~Giit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~g~ 238 (482)
|++||++++++.. +++||++++.||+|+|||||++|+|+.|.|+........+.+.+.......... ...+.
T Consensus 160 V~~dG~i~~~~~~~~k~~~g~dl~~l~iGs~GtlGiit~~tl~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (459)
T COG0277 160 VLPDGEILRLGRKLRKDNAGYDLTALFVGSEGTLGIITEATLKLLPLPETKATAVAGFPSIEAAARLAVAAIALLEALGV 239 (459)
T ss_pred EcCCceehhhcCcccCCCCCCCHHHhcccCCccceEEEEEEEEeccCCchheEEEEeCCCHHHHHHHHHHHHHhhhhcCC
Confidence 9999999999874 458999999999999999999999999999987777777777766554332222 11111
Q ss_pred CCCCCCCcccceEeecCCCCCcCCcccchhhhccccccceEEEEEEEEEeCCCcchHHHHHHHhccccCC---CCccccc
Q 044784 239 SDKVMPDFLEGHLLMNQSPLDFYPQSQRRKITFLVNQYGILYIIEVVTYYDNKNEAKKVKQMLKSLKGFL---PGFVFEK 315 (482)
Q Consensus 239 ~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~~~~ 315 (482)
.+. ..++++....... ...... ..+......++.++.... .....+....+.+.+.... .......
T Consensus 240 ~~~-~~e~~~~~~~~~~---~~~~~~------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (459)
T COG0277 240 IPA-ALEFMDRPIKAAE---AYLGGG------ALPLEAPARLLVEVEGSD-EAAVDEALEALGELLLEHGLARDLVVAQD 308 (459)
T ss_pred Cce-eeeecchhHHHHH---Hhcccc------CCCCCCceEEEEEEcCCc-HHHHHHHHHHHHHHHHhcCCceeEEEeCC
Confidence 122 3455544200000 000000 112222222333222221 1110122222222221111 0100001
Q ss_pred cchHHHHhhhhhHHHHHHHHccCCCCCccccccccccchhhhhhHHHHHHHhhccCCCCceEEEEEccCCCCCcCcceee
Q 044784 316 DVTYLQFLNRVHDQEIELRKKGLWDIPHPWLNIFIPKSRITDFDNGVFRNILLKRNFTSSTVLVYPLLRSKWDERMSAVI 395 (482)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~w~~r~~~~~~~vp~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~g~~~~~~~~~~~ 395 (482)
...+..+... ..........+.....+.+..+|.+.+.+++.++ ..+... ... ...+..++
T Consensus 309 ~~~~~~~~~~---r~~~~~~~~~~~~~~~~~d~~vp~~~~~~~~~~~-~~~~~~-~~~--------------~~~~~~~~ 369 (459)
T COG0277 309 LAEAARLWLA---RKGALAAAGALGPGVIQEDVVVPLEALPEFLREI-LALLDK-AGL--------------ALRVALFG 369 (459)
T ss_pred HHHHHHHHHH---HHHHHHHHHhhCCCccccceeeeHHHHHHHHHHH-HHHHHh-cCC--------------Cceeeeec
Confidence 1111111110 0101111111111123457889999999999876 444431 100 02344566
Q ss_pred cc-CCceEEEEEeeCCC-cchHHHHHHhhHHHHHHHHHcCccceecCCCCCChhhH-HHhhccchhHHHHhhhcCCCCCC
Q 044784 396 AA-EEEVFYFVGFLDAS-ADNWEAFDNKNKDILQFCVNAGIKFKQYLGHHATKEEW-IIHFGSKWNTFQQRKTRFDPRMI 472 (482)
Q Consensus 396 ~~-~~~~~~~i~~~~~~-~~~~~~~~~~~~~l~~~~~~~G~~~~~y~~~~~~~~~~-~~~yG~~~~~L~~iK~~~DP~ni 472 (482)
|. ++++|+.+.+.... .+..+........+.+.+.++|+....+........+| ..+++..+++|+++|+.|||+||
T Consensus 370 ~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~gG~~~~~h~~g~~~~~~~~~~~~~~~~~~~~~k~~~DP~~i 449 (459)
T COG0277 370 HAGDGNLHLNILYDVGDEAEELARAEALNEAIEALAVELGGSISGEHGIGRTKAEFLELEPGEAWALLRAIKRAFDPNGI 449 (459)
T ss_pred ccCCCcceeeeccCCCccHHHHHHHHHHHHHHHHHHHHhCCeeEEecccchhhHHHHHHHHhHHHHHHHHHHHhcCCCCC
Confidence 66 88888877665432 23334445666777777788777655555555556677 66666789999999999999999
Q ss_pred CCCCCcCCC
Q 044784 473 LSPGQRIFN 481 (482)
Q Consensus 473 fnpgk~i~~ 481 (482)
|||||.++.
T Consensus 450 ~npg~~~~~ 458 (459)
T COG0277 450 FNPGKLFRL 458 (459)
T ss_pred CCCCccCCC
Confidence 999999864
No 7
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=100.00 E-value=6e-41 Score=312.90 Aligned_cols=412 Identities=15% Similarity=0.161 Sum_probs=289.7
Q ss_pred CCeecChhHHHHHhhhcCCcCCCCccEEEECCCHHHHHHHHHHHHhccCCCeEEEEcCCCCCCCCccC-CCcEEEEcCCC
Q 044784 6 DNLRTDPGAIKLASIDYGHIIKEKPFAVLYPTSVDDIRTLIYLSYNSLFSYTIAAKGQAHSTWGQAQA-NDGVVVQMNSL 84 (482)
Q Consensus 6 ~~v~~~~~~~~~~~~~~~~~~~~~p~~vv~p~~~~ev~~~v~~a~~~~~~~~~~~~g~g~~~~~~~~~-~~~vvidl~~~ 84 (482)
+.+.+++++++.+.+||.+.+++.-..|++|.|++||++|+++| +++++.++|+||.+++.|.+.| .+-|||+|.+|
T Consensus 66 d~~~~~~edL~~~n~dwm~kyrG~sklvL~Pkst~eVS~ILkYC--n~~kLAVVPQGGNTgLVGgSVPvfDEiVlsl~~m 143 (511)
T KOG1232|consen 66 DEVSTDKEDLENFNTDWMKKYRGQSKLVLKPKSTEEVSAILKYC--NDRKLAVVPQGGNTGLVGGSVPVFDEIVLSLGLM 143 (511)
T ss_pred cccccChHHHhhhhhHHHHhccCCceEEecCCCHHHHHHHHHhh--ccccEEEecCCCCcccccCcccchHHHhhhhhhh
Confidence 34667889999999999999999999999999999999999999 8999999999999999999888 68899999999
Q ss_pred cCcCCCceEEEcCCCCCccEEEEcccccHHHHHHHHHhCCCc-cccCCCCCCccccccccccccCCCCCcCCCccccEEE
Q 044784 85 NRFRNGTGILISGDRSSGFYADVGGEQLWIDVLNATLTRGLS-PVSWTDYLYPTVGGTLSNAGISGHTYQKGPQITNVLE 163 (482)
Q Consensus 85 ~~~~~~~~i~~~~~~~~~~~~~v~aG~~~~~l~~~l~~~g~~-~~~~~~~~~~tvGG~~~~~g~g~~~~~~G~~~d~v~~ 163 (482)
| ++..+|+- .+.++++|||.+.++...|.++|+. |.+.++-..|.|||.+++++.|-+-.+||..+.+|++
T Consensus 144 N-----Ki~sfDev---sGil~cdaG~ILen~d~~l~e~g~m~PlDLgAKgsCqiGG~vsTnAGGlrllRYGsLHgsvLG 215 (511)
T KOG1232|consen 144 N-----KILSFDEV---SGILKCDAGVILENADNFLAEKGYMFPLDLGAKGSCQIGGNVSTNAGGLRLLRYGSLHGSVLG 215 (511)
T ss_pred c-----cccccccc---cceEEeccceEehhhHHHHHhcCceeeecCCCcccceecceeeccCCceEEEEecccccceee
Confidence 9 59999998 5999999999999999999999987 8888888889999999999888889999999999999
Q ss_pred EEEEecCCeEEEec-----CCCCchhHHhHhcCCCCcEEEEEEEEEEeecCCceEEEEEEeCChhhHHHHHHHHHhcCC-
Q 044784 164 LDVLTGKGEFVTCS-----PQKDSELFYAVLGGLGQFGIITRARIVLGPAKKRVKWLRILYSDFSSFSTDQETLISTTG- 237 (482)
Q Consensus 164 ~~vv~~~G~~~~~~-----~~~~~dl~~~~~g~~g~~Giit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g- 237 (482)
+|+|+|+|+++..- ...+.|+-+.+.||+|++||||++++-+.|.|+.+....+...++++....+.+..+.-+
T Consensus 216 le~Vlp~G~vl~~~~slRKDNTgydlkhLFIGSEGtlGVvT~vSil~~~kpksvn~af~gi~sf~~v~k~fv~Aks~L~E 295 (511)
T KOG1232|consen 216 LEVVLPNGTVLDLLSSLRKDNTGYDLKHLFIGSEGTLGVVTKVSILAPPKPKSVNVAFIGIESFDDVQKVFVEAKSNLTE 295 (511)
T ss_pred eEEEcCCCchhhhhhhhcccCccccchhheecCCceeeEEeeEEEeecCCCcceeEEEEccccHHHHHHHHHHHHHHHHH
Confidence 99999999998642 235789999999999999999999999999999766666655666554433322222111
Q ss_pred CCCCCCCCcccceEeecCCCCCcCCcccchhhhcccccc-ceEEEEEEEEEeCCCc--chHHHHHHHhccccCCCCcccc
Q 044784 238 PSDKVMPDFLEGHLLMNQSPLDFYPQSQRRKITFLVNQY-GILYIIEVVTYYDNKN--EAKKVKQMLKSLKGFLPGFVFE 314 (482)
Q Consensus 238 ~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~~~ 314 (482)
+.. ++|+||...+-.. ...+... +.|-.. ...+++ ....|+.. +.+++.+.++....-+-.....
T Consensus 296 ILS--afElmD~~s~~~~--~~~l~~l------~~pl~~~~pFyiL--iETsGSn~dhD~eKl~afl~d~lek~lIsDGv 363 (511)
T KOG1232|consen 296 ILS--AFELMDNASMELV--LEYLKDL------HFPLEDEHPFYIL--IETSGSNKDHDEEKLTAFLEDCLEKGLISDGV 363 (511)
T ss_pred HHH--HHHhhcchHHHHH--HHHhccC------CCCccCCCceEEE--EEecCCCccccHHHHHHHHHHhhhhcccccce
Confidence 112 3677776543111 0011100 112222 233333 22334332 2567777776553211111000
Q ss_pred ccchHHHHhhhhhHHHHHHHHccCCCCCcc------------ccccccccchhhhhhHHHHHHHhhccCCCCceEEEEEc
Q 044784 315 KDVTYLQFLNRVHDQEIELRKKGLWDIPHP------------WLNIFIPKSRITDFDNGVFRNILLKRNFTSSTVLVYPL 382 (482)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~w~~r~~------------~~~~~vp~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~ 382 (482)
...+..+...+|+.|.. -.++.+|...+-++++..-+++...
T Consensus 364 -------------~a~d~~~~~~lW~~Re~ip~a~~~~g~vyKyDvSLpL~d~Y~lvn~~~eRl~~~------------- 417 (511)
T KOG1232|consen 364 -------------LAQDEAEAQKLWKIRESIPEALQKAGGVYKYDVSLPLEDLYNLVNVMKERLGEA------------- 417 (511)
T ss_pred -------------ecCCHHHHHHHHHHHhccHHHHHhcCCEEEeeccccHHHHHHHHHHHHHhhhhh-------------
Confidence 00111222333433322 1357788877777776543333321
Q ss_pred cCCCCCcCcceeecc-CCceEEEEEeeCCCcchHHHHHHhhHHHHHHHHHc--------Ccc--ceecCCCCCChhhHHH
Q 044784 383 LRSKWDERMSAVIAA-EEEVFYFVGFLDASADNWEAFDNKNKDILQFCVNA--------GIK--FKQYLGHHATKEEWII 451 (482)
Q Consensus 383 ~g~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~--------G~~--~~~y~~~~~~~~~~~~ 451 (482)
..-.++..++|. |||+|.+|..--.. .+.++ -...-+++|+..+ |+| +.+|+-+..+++
T Consensus 418 ---~l~~d~~gyGHlGDgNlHLNia~~efn-~~iek--~lePfvYE~vs~~~GSISAEHGiG~lKk~~~~ysKspe---- 487 (511)
T KOG1232|consen 418 ---ALVGDIVGYGHLGDGNLHLNIAVREFN-KEIEK--LLEPFVYEWVSKHKGSISAEHGIGFLKKPYLHYSKSPE---- 487 (511)
T ss_pred ---hhhhcccccccccCCceeEeeeHHHHh-HHHHH--hhhhHHHHHHHhcCCceeccccccccccCccccCCCHH----
Confidence 001124567888 99999987652211 11111 2223345666553 566 788887777777
Q ss_pred hhccchhHHHHhhhcCCCCCCCCCCCcC
Q 044784 452 HFGSKWNTFQQRKTRFDPRMILSPGQRI 479 (482)
Q Consensus 452 ~yG~~~~~L~~iK~~~DP~nifnpgk~i 479 (482)
....|+.||+.|||++|+||.|.|
T Consensus 488 ----~i~lmk~lKn~~DPngILnPYK~i 511 (511)
T KOG1232|consen 488 ----EILLMKDLKNLFDPNGILNPYKYI 511 (511)
T ss_pred ----HHHHHHHHHhhcCCcccCCccccC
Confidence 788999999999999999999865
No 8
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase. This model represents a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae.
Probab=100.00 E-value=2e-38 Score=321.54 Aligned_cols=200 Identities=17% Similarity=0.200 Sum_probs=177.9
Q ss_pred hhhcCCcCCCCccEEEECCCHHHHHHHHHHHHhccCCCeEEEEcCCCCCCCCccCCCcEEEEcCCCcCcCCCceEEEcCC
Q 044784 19 SIDYGHIIKEKPFAVLYPTSVDDIRTLIYLSYNSLFSYTIAAKGQAHSTWGQAQANDGVVVQMNSLNRFRNGTGILISGD 98 (482)
Q Consensus 19 ~~~~~~~~~~~p~~vv~p~~~~ev~~~v~~a~~~~~~~~~~~~g~g~~~~~~~~~~~~vvidl~~~~~~~~~~~i~~~~~ 98 (482)
+++|++.+...|..|++|+|++||+++|+.| +. |++++|+|||+.+.+.. +|++|||++|| +++++|++
T Consensus 1 w~nW~~~~~~~p~~v~~P~s~~ev~~~v~~a--~~---~v~~~G~Ghs~~~~~~~-~g~~idl~~l~-----~i~~~d~~ 69 (419)
T TIGR01679 1 WSNWSGEQVAAPSAIVRPTDEGELADVIAQA--AK---PVRAVGSGHSFTDLACT-DGTMISLTGLQ-----GVVDVDQP 69 (419)
T ss_pred CcCCCCCccCCCCeEECCCCHHHHHHHHHHh--CC---CEEEEeCCCCCCCcccC-CCEEEEhhHcC-----CceeecCC
Confidence 3689887788999999999999999999999 43 79999999999976654 78999999999 47899998
Q ss_pred CCCccEEEEcccccHHHHHHHHHhCCCccccCCCCCCccccccccccccCCCCCcCCCccccEEEEEEEecCCeEEEecC
Q 044784 99 RSSGFYADVGGEQLWIDVLNATLTRGLSPVSWTDYLYPTVGGTLSNAGISGHTYQKGPQITNVLELDVLTGKGEFVTCSP 178 (482)
Q Consensus 99 ~~~~~~~~v~aG~~~~~l~~~l~~~g~~~~~~~~~~~~tvGG~~~~~g~g~~~~~~G~~~d~v~~~~vv~~~G~~~~~~~ 178 (482)
.++|+||||+++.+|.++|.++|+.+++.++...+||||+++++++| .+.+||.++|+|++++||++||+++++++
T Consensus 70 ---~~~v~v~aG~~l~~l~~~L~~~G~~l~~~~~~~~~tvGG~ia~~~hG-~g~~~G~~~d~V~~l~vV~a~G~v~~~~~ 145 (419)
T TIGR01679 70 ---TGLATVEAGTRLGALGPQLAQRGLGLENQGDIDPQSIGGALGTATHG-TGVRFQALHARIVSLRLVTAGGKVLDLSE 145 (419)
T ss_pred ---CCEEEEcCCCCHHHHHHHHHHcCCccccCCCCCCceeccceecCCCC-CCccCCchhhhEEEEEEEcCCCCEEEEcC
Confidence 48999999999999999999999998888888889999999987555 56799999999999999999999999999
Q ss_pred CCCchhHHhHhcCCCCcEEEEEEEEEEeecCCceEEEEEEeCChhhHHHHHHHHHhc
Q 044784 179 QKDSELFYAVLGGLGQFGIITRARIVLGPAKKRVKWLRILYSDFSSFSTDQETLIST 235 (482)
Q Consensus 179 ~~~~dl~~~~~g~~g~~Giit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (482)
.+++||||+++||+|+|||||++|||++|.+.... .....+++++.+.+.+++..
T Consensus 146 ~~~~dLf~a~~g~~G~lGVIt~vtl~~~p~~~~~~--~~~~~~~~~~~~~~~~~~~~ 200 (419)
T TIGR01679 146 GDDQDMYLAARVSLGALGVISQVTLQTVALFRLRR--RDWRRPLAQTLERLDEFVDG 200 (419)
T ss_pred CCCHHHHHHHHhCCCceEEEEEEEEEeecceEeEE--EEEecCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999987543 33445677788888877764
No 9
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases. This model represents a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesizing ascorbic acid or a derivative. These include L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by Prosite motif PS00862; OX2_COVAL_FAD; 1.
Probab=100.00 E-value=5e-38 Score=318.56 Aligned_cols=203 Identities=19% Similarity=0.276 Sum_probs=182.5
Q ss_pred hhhcCCcCCCCccEEEECCCHHHHHHHHHHHHhccCCCeEEEEcCCCCCCCCccCCCcEEEEcCCCcCcCCCceEEEcCC
Q 044784 19 SIDYGHIIKEKPFAVLYPTSVDDIRTLIYLSYNSLFSYTIAAKGQAHSTWGQAQANDGVVVQMNSLNRFRNGTGILISGD 98 (482)
Q Consensus 19 ~~~~~~~~~~~p~~vv~p~~~~ev~~~v~~a~~~~~~~~~~~~g~g~~~~~~~~~~~~vvidl~~~~~~~~~~~i~~~~~ 98 (482)
+++|++.+...|..|+.|+|++||+++|++| +++++|++++|+|||+++.... +|++|||++|| +++++|++
T Consensus 4 w~nW~~~~~~~p~~v~~P~s~eev~~iv~~A--~~~~~~v~v~G~GhS~s~~~~~-~gvvIdl~~l~-----~i~~id~~ 75 (438)
T TIGR01678 4 FQNWAKTYSASPEVYYQPTSVEEVREVLALA--REQKKKVKVVGGGHSPSDIACT-DGFLIHLDKMN-----KVLQFDKE 75 (438)
T ss_pred EEeCCCcccCCCCEEEecCCHHHHHHHHHHH--HHCCCeEEEECCCCCCCCCccC-CeEEEEhhhcC-----CceEEcCC
Confidence 4689888888999999999999999999999 7999999999999999976654 78999999999 47899998
Q ss_pred CCCccEEEEcccccHHHHHHHHHhCCCccccCCCCCCccccccccccccCCCCCcCCCccccEEEEEEEecCCeEEEecC
Q 044784 99 RSSGFYADVGGEQLWIDVLNATLTRGLSPVSWTDYLYPTVGGTLSNAGISGHTYQKGPQITNVLELDVLTGKGEFVTCSP 178 (482)
Q Consensus 99 ~~~~~~~~v~aG~~~~~l~~~l~~~g~~~~~~~~~~~~tvGG~~~~~g~g~~~~~~G~~~d~v~~~~vv~~~G~~~~~~~ 178 (482)
.++|+|+||+++.+|.+.|.++|+.+++.++++.+||||+++++++| .+.+||.++|+|+++++|++||+++++++
T Consensus 76 ---~~~vtV~aG~~l~~L~~~L~~~Gl~l~~~g~~~~~TvGG~iatg~hG-~~~~~G~~~d~V~~l~vV~~~G~i~~~s~ 151 (438)
T TIGR01678 76 ---KKQITVEAGIRLYQLHEQLDEHGYSMSNLGSISEVSVAGIISTGTHG-SSIKHGILATQVVALTIMTADGEVLECSE 151 (438)
T ss_pred ---CCEEEEcCCCCHHHHHHHHHHcCCEecCCCCCCCceeeehhcCCCCC-CccccCcHHhhEEEEEEEcCCCcEEEeCC
Confidence 48999999999999999999999998888888999999999987666 57899999999999999999999999999
Q ss_pred CCCchhHHhHhcCCCCcEEEEEEEEEEeecCCceEEEEEEeCChhhHHHHHHHHHhc
Q 044784 179 QKDSELFYAVLGGLGQFGIITRARIVLGPAKKRVKWLRILYSDFSSFSTDQETLIST 235 (482)
Q Consensus 179 ~~~~dl~~~~~g~~g~~Giit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (482)
++++|+||+.++++|+|||||++|||+.|.+..... ....+++++++...++.+.
T Consensus 152 ~~~~dlf~a~~~~~G~lGIIt~vtl~l~p~~~l~~~--~~~~~~~~~~~~~~~~~~~ 206 (438)
T TIGR01678 152 ERNADVFQAARVSLGCLGIIVTVTIQVVPQFHLQET--SFVSTLKELLDNWDSHWKS 206 (438)
T ss_pred CCChhHHHHHhcCCCceEeeEEEEEEEEeccceEEE--EecCCHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999876533 3456677777777666554
No 10
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=100.00 E-value=6.9e-37 Score=311.40 Aligned_cols=204 Identities=13% Similarity=0.202 Sum_probs=183.9
Q ss_pred HhhhcCCcCCCCccEEEECCCHHHHHHHHHHHHhccCCCeEEEEcCCCCCCCCccCCCcEEEEcCCCcCcCCCceEEEcC
Q 044784 18 ASIDYGHIIKEKPFAVLYPTSVDDIRTLIYLSYNSLFSYTIAAKGQAHSTWGQAQANDGVVVQMNSLNRFRNGTGILISG 97 (482)
Q Consensus 18 ~~~~~~~~~~~~p~~vv~p~~~~ev~~~v~~a~~~~~~~~~~~~g~g~~~~~~~~~~~~vvidl~~~~~~~~~~~i~~~~ 97 (482)
.+++|++.....|..+++|.|++||+++|+.| ++++++|+++|+|||+.+.+.+ ++.+|||++|| +++++|.
T Consensus 50 ~w~NWsg~~~~~p~~~~~P~s~eEV~~iV~~A--~~~g~~Vr~~GsGhS~sg~a~t-~g~lldL~~ln-----~Vl~vD~ 121 (541)
T TIGR01676 50 TVSNWSGTHEVLTRTFHQPEAIEELEGIVKQA--NEKKARIRPVGSGLSPNGIGLS-RAGMVNLALMD-----KVLEVDE 121 (541)
T ss_pred cccccCCccccCcceEECCCCHHHHHHHHHHH--HHcCCcEEEECCCcCCCCcccC-CCeEEEhhhCC-----CCEEEcC
Confidence 35799998889999999999999999999999 7899999999999999988776 45689999999 4899999
Q ss_pred CCCCccEEEEcccccHHHHHHHHHhCCCccccCCCCCCccccccccccccCCCCCcCCCccccEEEEEEEecCCeEEEec
Q 044784 98 DRSSGFYADVGGEQLWIDVLNATLTRGLSPVSWTDYLYPTVGGTLSNAGISGHTYQKGPQITNVLELDVLTGKGEFVTCS 177 (482)
Q Consensus 98 ~~~~~~~~~v~aG~~~~~l~~~l~~~g~~~~~~~~~~~~tvGG~~~~~g~g~~~~~~G~~~d~v~~~~vv~~~G~~~~~~ 177 (482)
+ .++|+|+||+++.+|.++|.++|+.+++.++.+.+||||++++|++|. +.+||.++|+|+++++|+++|++++++
T Consensus 122 ~---~~tVtV~AG~~l~~L~~~L~~~Glal~n~gsi~~~TIGGaiatgtHGt-g~~~G~l~d~V~~l~lVta~G~vv~~s 197 (541)
T TIGR01676 122 E---KKRVRVQAGIRVQQLVDAIKEYGITLQNFASIREQQIGGIIQVGAHGT-GAKLPPIDEQVIAMKLVTPAKGTIEIS 197 (541)
T ss_pred C---CCEEEEcCCCCHHHHHHHHHHcCCEeccCCCCCCceEccccccCCcCC-CCCCCCHHHhEEEEEEEECCCCEEEEC
Confidence 9 499999999999999999999999999999999999999999976554 668999999999999999999999999
Q ss_pred CCCCchhHHhHhcCCCCcEEEEEEEEEEeecCCceEEEEEEeCChhhHHHHHHHHHhc
Q 044784 178 PQKDSELFYAVLGGLGQFGIITRARIVLGPAKKRVKWLRILYSDFSSFSTDQETLIST 235 (482)
Q Consensus 178 ~~~~~dl~~~~~g~~g~~Giit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (482)
+.+++||||+.+||+|+|||||++|||+.|.+....... . .++++..+...++...
T Consensus 198 ~~~~pdLF~AargslG~LGVItevTLr~~Pa~~l~~~~~-~-~~~~e~l~~~~~~~~~ 253 (541)
T TIGR01676 198 KDKDPELFFLARCGLGGLGVVAEVTLQCVERQELVEHTF-I-SNMKDIKKNHKKFLAD 253 (541)
T ss_pred CCCCHHHHHHHhcCCCceEeEEEEEEEEEeccceeEEEE-e-cCHHHHHHHHHHHHhc
Confidence 989999999999999999999999999999998643222 2 4578888888887665
No 11
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=100.00 E-value=1.6e-36 Score=313.41 Aligned_cols=209 Identities=15% Similarity=0.161 Sum_probs=182.3
Q ss_pred HHHHhhhcCCcCCCCccEEEECCCHHHHHHHHHHHHhccCCCeEEEEc-CCCCCCCCccCC---CcEEEEcCCCcCcCCC
Q 044784 15 IKLASIDYGHIIKEKPFAVLYPTSVDDIRTLIYLSYNSLFSYTIAAKG-QAHSTWGQAQAN---DGVVVQMNSLNRFRNG 90 (482)
Q Consensus 15 ~~~~~~~~~~~~~~~p~~vv~p~~~~ev~~~v~~a~~~~~~~~~~~~g-~g~~~~~~~~~~---~~vvidl~~~~~~~~~ 90 (482)
..+++++|++++...|..|++|+|++||+++|++| +++++|++++| +||++.+.+... +|++|||++||
T Consensus 17 ~~~~w~nWag~~~~~p~~vv~P~s~eeV~~iV~~A--~~~g~~v~v~GG~gHs~~~~a~t~~~~ggvvIdL~~Ln----- 89 (557)
T TIGR01677 17 VSNAYGAFPDRSTCRAANVAYPKTEAELVSVVAAA--TAAGRKMKVVTRYSHSIPKLACPDGSDGALLISTKRLN----- 89 (557)
T ss_pred eecchhhcCCcccCCCCEEEecCCHHHHHHHHHHH--HHCCCeEEEEeCCCCCcCcccccCCCCCEEEEEcccCC-----
Confidence 34678999999999999999999999999999999 79999999996 699988665442 36999999999
Q ss_pred ceEEEcCCCCCccEEEEcccccHHHHHHHHHhCCCccccCCCCCCccccccccccccCCCC-CcCCCccccEEEEEEEec
Q 044784 91 TGILISGDRSSGFYADVGGEQLWIDVLNATLTRGLSPVSWTDYLYPTVGGTLSNAGISGHT-YQKGPQITNVLELDVLTG 169 (482)
Q Consensus 91 ~~i~~~~~~~~~~~~~v~aG~~~~~l~~~l~~~g~~~~~~~~~~~~tvGG~~~~~g~g~~~-~~~G~~~d~v~~~~vv~~ 169 (482)
+++++|.+ .++|+|+||+++.+|.++|.++|+.++..|+...+||||+++++++|... ..||.++|+|++++||++
T Consensus 90 ~il~iD~~---~~tVtV~AG~~l~~L~~~L~~~Glal~~~~~~~~~TVGGaiatGthGs~~~~~~G~l~d~V~~l~vV~a 166 (557)
T TIGR01677 90 HVVAVDAT---AMTVTVESGMSLRELIVEAEKAGLALPYAPYWWGLTVGGMMGTGAHGSSLWGKGSAVHDYVVGIRLVVP 166 (557)
T ss_pred CCEEEeCC---CCEEEECCCCcHHHHHHHHHHcCCEeccCCCCCCeEeeEhhhCCCCCccccccccchhheEEEEEEEeC
Confidence 47999998 48999999999999999999999999888888889999999988777555 488999999999999999
Q ss_pred CC------eEEEecCCCCchhHHhHhcCCCCcEEEEEEEEEEeecCCceEEEEEEeCChhhHHHHHHHHHhc
Q 044784 170 KG------EFVTCSPQKDSELFYAVLGGLGQFGIITRARIVLGPAKKRVKWLRILYSDFSSFSTDQETLIST 235 (482)
Q Consensus 170 ~G------~~~~~~~~~~~dl~~~~~g~~g~~Giit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (482)
+| +++++++.+++||||+++|++|+|||||++|||++|.+... ..+.+...+.+.+.+.++...
T Consensus 167 ~G~a~G~~~v~~~s~~~~~dLf~a~rgslG~lGVVtevTL~~~P~~~~~--~~~~~~~~~~l~~~~~~~~~~ 236 (557)
T TIGR01677 167 ASAAEGFAKVRILSEGDTPNEFNAAKVSLGVLGVISQVTLALQPMFKRS--VTYTMRDDSDFEDQFVTFGKK 236 (557)
T ss_pred CCcccCcceEEEeCCCCCHHHHHhhccCCCccEeeeEEEEEEEccccce--EEEEcCCHHHHHHHHHHhhcC
Confidence 98 89999998999999999999999999999999999998732 345566666666656665543
No 12
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=100.00 E-value=2.2e-35 Score=288.86 Aligned_cols=184 Identities=13% Similarity=0.115 Sum_probs=156.3
Q ss_pred CHHHHHHHHHHHHhccCCCeEEEEcCCCC-CCCCccCCCcEEEEcCCCcCcCCCceEEEcCCCCCccEEEEcccccHHHH
Q 044784 38 SVDDIRTLIYLSYNSLFSYTIAAKGQAHS-TWGQAQANDGVVVQMNSLNRFRNGTGILISGDRSSGFYADVGGEQLWIDV 116 (482)
Q Consensus 38 ~~~ev~~~v~~a~~~~~~~~~~~~g~g~~-~~~~~~~~~~vvidl~~~~~~~~~~~i~~~~~~~~~~~~~v~aG~~~~~l 116 (482)
.++||+++|++| +++++|++|+||||+ ..+. +.++++|||++|| +++++|+++ .+++|+||+++.+|
T Consensus 3 ~~~ev~~~v~~A--~~~~~~v~~~GgGt~~~~g~--~~~~~vldl~~ln-----~Ile~d~~~---~~vtV~AG~~l~el 70 (352)
T PRK11282 3 ISAALLERVRQA--AADGTPLRIRGGGSKDFYGR--ALAGEVLDTRAHR-----GIVSYDPTE---LVITARAGTPLAEL 70 (352)
T ss_pred hHHHHHHHHHHH--HHCCCeEEEECCCCCCCCCC--CCCCeEEEcccCC-----CcEEEcCCC---CEEEECCCCCHHHH
Confidence 479999999999 799999999999974 4455 2357899999999 488999994 99999999999999
Q ss_pred HHHHHhCCCcccc-CCCCC-CccccccccccccCCCCCcCCCccccEEEEEEEecCCeEEEecCC-----CCchhHHhHh
Q 044784 117 LNATLTRGLSPVS-WTDYL-YPTVGGTLSNAGISGHTYQKGPQITNVLELDVLTGKGEFVTCSPQ-----KDSELFYAVL 189 (482)
Q Consensus 117 ~~~l~~~g~~~~~-~~~~~-~~tvGG~~~~~g~g~~~~~~G~~~d~v~~~~vv~~~G~~~~~~~~-----~~~dl~~~~~ 189 (482)
.++|.++|+.++. +++.. .+||||++++|++|..+.+||.++|+|+++++|++||++++++.. +++||||+++
T Consensus 71 ~~~L~~~G~~lp~~p~~~~~~~TIGG~iatg~~G~~~~~yG~~~D~Vlg~~vV~~~Gei~~~gg~v~kn~~G~DL~~l~~ 150 (352)
T PRK11282 71 EAALAEAGQMLPFEPPHFGGGATLGGMVAAGLSGPRRPWAGAVRDFVLGTRLINGRGEHLRFGGQVMKNVAGYDVSRLMA 150 (352)
T ss_pred HHHHHHcCCeeCCCCCCcCCCcEehhHHhcCCCCccccccCCHHHhEeeEEEEcCCceEEEeCCcccCCCCCchHHHHHh
Confidence 9999999988554 33333 489999999999999999999999999999999999999998753 4789999999
Q ss_pred cCCCCcEEEEEEEEEEeecCCceEEEEEEeCChhhHHHHHHHHHh
Q 044784 190 GGLGQFGIITRARIVLGPAKKRVKWLRILYSDFSSFSTDQETLIS 234 (482)
Q Consensus 190 g~~g~~Giit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (482)
||+|+|||||++|||++|.|+....+.+.++ ..++.+.+.++..
T Consensus 151 Gs~GtLGVitevtlkl~P~p~~~~t~~~~~~-~~~a~~~~~~~~~ 194 (352)
T PRK11282 151 GSLGTLGVLLEVSLKVLPRPRAELTLRLEMD-AAEALRKLNEWGG 194 (352)
T ss_pred hCCchhhhheEEEEEEEecCceEEEEEEecC-HHHHHHHHHHHhc
Confidence 9999999999999999999997666555554 4555555555443
No 13
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=100.00 E-value=3.2e-33 Score=286.90 Aligned_cols=206 Identities=16% Similarity=0.207 Sum_probs=182.5
Q ss_pred HHHhhhcCCcCCCCccEEEECCCHHHHHHHHHHHHhccCCCeEEEEcCCCCCCCCccCCCcEEEEcCCCcCcCCCceEEE
Q 044784 16 KLASIDYGHIIKEKPFAVLYPTSVDDIRTLIYLSYNSLFSYTIAAKGQAHSTWGQAQANDGVVVQMNSLNRFRNGTGILI 95 (482)
Q Consensus 16 ~~~~~~~~~~~~~~p~~vv~p~~~~ev~~~v~~a~~~~~~~~~~~~g~g~~~~~~~~~~~~vvidl~~~~~~~~~~~i~~ 95 (482)
...+++|++.....|..++.|.|++||+++|+.| +++++||+++|+|||..+.... ++.+|||++|| +++++
T Consensus 83 ~~~~~NWsg~~~~~p~~vv~P~S~eEV~~iV~~A--~~~g~~VrvvGsGhS~~~l~~t-d~glIdL~~l~-----~Il~v 154 (573)
T PLN02465 83 LHTVSNWSGTHEVQTRRYHQPESLEELEDIVKEA--HEKGRRIRPVGSGLSPNGLAFS-REGMVNLALMD-----KVLEV 154 (573)
T ss_pred chhccccccccCCCCCEEEEeCCHHHHHHHHHHH--HHcCCcEEEEcCCcCCCCeeeC-CCEEEECcCCC-----CcEEE
Confidence 3467899998889999999999999999999999 7999999999999999887776 45579999999 48899
Q ss_pred cCCCCCccEEEEcccccHHHHHHHHHhCCCccccCCCCCCccccccccccccCCCCCcCCCccccEEEEEEEecCCeEEE
Q 044784 96 SGDRSSGFYADVGGEQLWIDVLNATLTRGLSPVSWTDYLYPTVGGTLSNAGISGHTYQKGPQITNVLELDVLTGKGEFVT 175 (482)
Q Consensus 96 ~~~~~~~~~~~v~aG~~~~~l~~~l~~~g~~~~~~~~~~~~tvGG~~~~~g~g~~~~~~G~~~d~v~~~~vv~~~G~~~~ 175 (482)
|.+ .++|+|+||+++.+|.++|.++|++++..++...+||||++++| .++.+..+|.++|+|+++++|+++|++++
T Consensus 155 D~e---~~~VtV~AG~~l~~L~~~L~~~GLal~n~g~I~~~TIGGaIstG-tHGtG~~~g~i~d~V~~l~lVta~G~vv~ 230 (573)
T PLN02465 155 DKE---KKRVTVQAGARVQQVVEALRPHGLTLQNYASIREQQIGGFIQVG-AHGTGARIPPIDEQVVSMKLVTPAKGTIE 230 (573)
T ss_pred eCC---CCEEEEccCCCHHHHHHHHHHcCCEeccCCCCCCeeecchhhCC-CCCcCCCcCcHhheEEEEEEEECCCCEEE
Confidence 998 48999999999999999999999999988888889999999875 55667789999999999999999999999
Q ss_pred ecCCCCchhHHhHhcCCCCcEEEEEEEEEEeecCCceEEEEEEeCChhhHHHHHHHHHhc
Q 044784 176 CSPQKDSELFYAVLGGLGQFGIITRARIVLGPAKKRVKWLRILYSDFSSFSTDQETLIST 235 (482)
Q Consensus 176 ~~~~~~~dl~~~~~g~~g~~Giit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (482)
+++++++||||+.+++.|.|||||++||++.|.++..... ...++++..+.+.++...
T Consensus 231 ~s~~~~pdLF~aar~glG~lGVIteVTLql~P~~~L~~~~--~~~~~~~~~~~~~~~~~~ 288 (573)
T PLN02465 231 LSKEDDPELFRLARCGLGGLGVVAEVTLQCVPAHRLVEHT--FVSNRKEIKKNHKKWLSE 288 (573)
T ss_pred ECCCCCHHHHhHhhccCCCCcEEEEEEEEEEecCceEEEE--EEecHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999864322 223477777777777664
No 14
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only]
Probab=100.00 E-value=1.7e-33 Score=263.56 Aligned_cols=427 Identities=14% Similarity=0.182 Sum_probs=274.2
Q ss_pred hcCCcCCCCccEEEECCCHHHHHHHHHHHHhccCCCeEEEEcCCCCCCC-CccCC----CcEEEEcCCCcCcCCCceEEE
Q 044784 21 DYGHIIKEKPFAVLYPTSVDDIRTLIYLSYNSLFSYTIAAKGQAHSTWG-QAQAN----DGVVVQMNSLNRFRNGTGILI 95 (482)
Q Consensus 21 ~~~~~~~~~p~~vv~p~~~~ev~~~v~~a~~~~~~~~~~~~g~g~~~~~-~~~~~----~~vvidl~~~~~~~~~~~i~~ 95 (482)
-|.+.+.+.|..||.|++.+||.++|+.| ..++.-++|.|||+|+++ ..++. .-+.+|++.||| ++++
T Consensus 152 Lregkf~RiPDiVvWP~chdevVkiv~lA--~khN~~iiPiGGGTSVs~al~cP~~E~R~iislDtsqmnr-----iLWi 224 (613)
T KOG1233|consen 152 LREGKFPRIPDIVVWPKCHDEVVKIVELA--MKHNCAIIPIGGGTSVSNALDCPETEKRAIISLDTSQMNR-----ILWI 224 (613)
T ss_pred HhcCccCCCCceEecccchHHHHHHHHHH--hhcCeEEEEeCCcccccccccCCcccceeEEEecHHhhhh-----eeEe
Confidence 35556788999999999999999999999 799999999999999984 44442 135688999995 9999
Q ss_pred cCCCCCccEEEEcccccHHHHHHHHHhCCCccccCC-CCCCccccccccccccCCCCCcCCCccccEEEEEEEecCCeEE
Q 044784 96 SGDRSSGFYADVGGEQLWIDVLNATLTRGLSPVSWT-DYLYPTVGGTLSNAGISGHTYQKGPQITNVLELDVLTGKGEFV 174 (482)
Q Consensus 96 ~~~~~~~~~~~v~aG~~~~~l~~~l~~~g~~~~~~~-~~~~~tvGG~~~~~g~g~~~~~~G~~~d~v~~~~vv~~~G~~~ 174 (482)
|.+| .++++|+|++-.+|.+.|.+.|++-.+-| +....|+||++++.+.|+.-..||.+.|.|+.+++|+|.|.+.
T Consensus 225 dreN---LT~~~eaGIvGQ~LERqL~~~G~t~GHEPDS~EFSTlGGWVsTRASGMKKN~YGNIEDLVVh~~mVtP~Giie 301 (613)
T KOG1233|consen 225 DREN---LTCRAEAGIVGQSLERQLNKKGFTCGHEPDSIEFSTLGGWVSTRASGMKKNKYGNIEDLVVHLNMVTPKGIIE 301 (613)
T ss_pred cccc---ceEEEecCcchHHHHHHHhhcCcccCCCCCceeeecccceeeeccccccccccCChhHheEEEEeecCcchhh
Confidence 9996 99999999999999999999999966555 5566899999999999999999999999999999999999876
Q ss_pred Ee-c---CCCCchhHHhHhcCCCCcEEEEEEEEEEeecCCceEEEEEEeCChhhHHHHHHHHHhcCCCCCCCCCCcccce
Q 044784 175 TC-S---PQKDSELFYAVLGGLGQFGIITRARIVLGPAKKRVKWLRILYSDFSSFSTDQETLISTTGPSDKVMPDFLEGH 250 (482)
Q Consensus 175 ~~-~---~~~~~dl~~~~~g~~g~~Giit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~e~l~~~ 250 (482)
+- . .+.+||+-+.+.||+|++||||++|+|++|+|+..+...+.|+++++....++++... +..|+ ++++||+.
T Consensus 302 k~Cq~PRmS~GPDihh~IlGSEGTLGVitEvtiKirPiPe~~ryGS~aFPNFEqGV~f~REvA~q-RCqPA-S~RLMDN~ 379 (613)
T KOG1233|consen 302 KQCQVPRMSSGPDIHHIILGSEGTLGVITEVTIKIRPIPEVKRYGSFAFPNFEQGVNFFREVAIQ-RCQPA-SLRLMDND 379 (613)
T ss_pred hhhcCCcccCCCCcceEEeccCcceeEEEEEEEEEeechhhhhcCccccCcHHHHHHHHHHHHHH-hcCch-heeeeccc
Confidence 52 2 1358999999999999999999999999999999888899999999999999998776 57788 78999887
Q ss_pred EeecC----CCCC-cCCccc----chhhhccccccceEEEEEEEEEeCCCcc----hHHHHHHHhccccCCCCccc----
Q 044784 251 LLMNQ----SPLD-FYPQSQ----RRKITFLVNQYGILYIIEVVTYYDNKNE----AKKVKQMLKSLKGFLPGFVF---- 313 (482)
Q Consensus 251 ~~~~~----~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~~---- 313 (482)
.++-- +... .+.+.. ...|+........-++...-.|.|+.++ .+.+-++.+++..+..+..+
T Consensus 380 QF~fGqALKp~~~Swwas~~d~~kk~YiTswKGfd~nqicaATllfEGdre~V~qhE~~~y~iAekF~G~~aG~~NGqrG 459 (613)
T KOG1233|consen 380 QFVFGQALKPASDSWWASLKDSVKKMYITSWKGFDVNQICAATLLFEGDREEVDQHEERLYKIAEKFHGVVAGAENGQRG 459 (613)
T ss_pred ceecccccCcchhhHHHHHHHHHhhheeecccCcCHhhhhhhhheecccHHHHHHHHHHHHHHHHHhCCccccccccccc
Confidence 65422 1110 111100 0011111110000011112334455432 23333444444322211111
Q ss_pred ---cccchHHHHh-hhhhHHHHHHHHccCCCCCccccccccccchhhhhhHHHHHHHhhccCCCCceEEEEEccCCCCCc
Q 044784 314 ---EKDVTYLQFL-NRVHDQEIELRKKGLWDIPHPWLNIFIPKSRITDFDNGVFRNILLKRNFTSSTVLVYPLLRSKWDE 389 (482)
Q Consensus 314 ---~~~~~~~~~~-~~~~~~~~~~~~~~~w~~r~~~~~~~vp~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~g~~~~~ 389 (482)
+..+.|..-+ ........ .++..+|-++...+-+.+-+++.+. -....+..+.+- ..
T Consensus 460 Y~LTfvIAYiRDlgl~~gvlgE-------------SFETSvPWDrv~~LCRnVKer~~rE--ck~~gv~~~~~s----~C 520 (613)
T KOG1233|consen 460 YRLTFVIAYIRDLGLNHGVLGE-------------SFETSVPWDRVLSLCRNVKERMKRE--CKAQGVTHPVLS----NC 520 (613)
T ss_pred eEEEEeHHHHHhhcccccchhh-------------cccccCCHHHHHHHHHHHHHHHHHH--HHhcCCCccccc----ce
Confidence 1111121100 00011111 2344566666666655553333320 000011111110 01
Q ss_pred CcceeeccCCceEEEEEeeCCC-cchHHHHHHhhHHHHHHHHHcCccceecCCCCCChhhH-HHhhcc-chhHHHHhhhc
Q 044784 390 RMSAVIAAEEEVFYFVGFLDAS-ADNWEAFDNKNKDILQFCVNAGIKFKQYLGHHATKEEW-IIHFGS-KWNTFQQRKTR 466 (482)
Q Consensus 390 ~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~l~~~~~~~G~~~~~y~~~~~~~~~~-~~~yG~-~~~~L~~iK~~ 466 (482)
.+...+.+-.++||+++|.... .+..+-+.+.....-+.+...|+....+.....=...| ...-|+ .+..|+++|+.
T Consensus 521 RVTQtYDAGACiYFYFgFn~rg~~dplevfe~iE~aARdEIlacGGSlSHHHGVGKiRkqW~~~~~~~vG~~llka~K~~ 600 (613)
T KOG1233|consen 521 RVTQTYDAGACIYFYFGFNARGLKDPLEVFERIETAARDEILACGGSLSHHHGVGKIRKQWMLTTNGAVGIALLKAIKSE 600 (613)
T ss_pred eEEEEecCceEEEEEEeeccccCCchHHHHHHHHHHhHHHHHhcCCcccccccchHHHHHHHHhhhhhHhHHHHHHHHHh
Confidence 1222333234688888887644 33333322222222222333455433332222224566 555665 79999999999
Q ss_pred CCCCCCCCCCCc
Q 044784 467 FDPRMILSPGQR 478 (482)
Q Consensus 467 ~DP~nifnpgk~ 478 (482)
.||+|||..+..
T Consensus 601 lDP~NIFa~~NL 612 (613)
T KOG1233|consen 601 LDPANIFASANL 612 (613)
T ss_pred cChhhhcccccc
Confidence 999999987754
No 15
>PRK11183 D-lactate dehydrogenase; Provisional
Probab=100.00 E-value=1.2e-32 Score=275.58 Aligned_cols=233 Identities=13% Similarity=0.133 Sum_probs=204.6
Q ss_pred CCCeecChhHHHHHhhhcCCcCCCCccEEEECCCHHHHHHHHHHHHhccCCCeEEEEcCCCCCCCCccCC------CcEE
Q 044784 5 TDNLRTDPGAIKLASIDYGHIIKEKPFAVLYPTSVDDIRTLIYLSYNSLFSYTIAAKGQAHSTWGQAQAN------DGVV 78 (482)
Q Consensus 5 ~~~v~~~~~~~~~~~~~~~~~~~~~p~~vv~p~~~~ev~~~v~~a~~~~~~~~~~~~g~g~~~~~~~~~~------~~vv 78 (482)
.++|++|+.....|..+|.. ..+.|.+||+|.|++||+++|++| +++++||++|||||++.|++.+. ++||
T Consensus 15 ~~~Vltd~~~l~~Y~~D~r~-~~g~P~AVV~P~SteEVa~IVklC--~e~~vPVIPRGgGTGLtGGAvP~~~~~dR~gVV 91 (564)
T PRK11183 15 SSHVLTDPAKTERYRKGFRS-GQGDALAVVFPGTLLELWRVLQAC--VAADKIIIMQAANTGLTGGSTPNGNDYDRDIVI 91 (564)
T ss_pred cccEecCHHHHHHhccCccc-cCCCCCEEEecCCHHHHHHHHHHH--HHcCCeEEEeCCCcccccCcccCCCCCcCCEEE
Confidence 35788999999999999865 677899999999999999999999 79999999999999999998874 2799
Q ss_pred EEcCCCcCcCCCceEEEcCCCCCccEEEEcccccHHHHHHHHHhCCCccccC--CCCCCccccccccccccCCCCCcCCC
Q 044784 79 VQMNSLNRFRNGTGILISGDRSSGFYADVGGEQLWIDVLNATLTRGLSPVSW--TDYLYPTVGGTLSNAGISGHTYQKGP 156 (482)
Q Consensus 79 idl~~~~~~~~~~~i~~~~~~~~~~~~~v~aG~~~~~l~~~l~~~g~~~~~~--~~~~~~tvGG~~~~~g~g~~~~~~G~ 156 (482)
|||++|| ++++||.+ .+++|+|||++.+|.++|.++|+.|+.. +++.++||||.|++|+.|....+||.
T Consensus 92 Isl~RMN-----rIleID~~----~~VvVePGVtl~~LeeaLk~~Gl~p~sd~GSS~IGasIGGnIAtNAGG~~vlRgga 162 (564)
T PRK11183 92 ISTLRLD-----KIQLLNNG----KQVLALPGTTLYQLEKALKPLGREPHSVIGSSCIGASVIGGICNNSGGALVQRGPA 162 (564)
T ss_pred EEhhHcC-----CcEEECCC----CeEEEeCCCcHHHHHHHHHHhCCCCCCcccccccCCCCccceEECCcchhheEcch
Confidence 9999999 48999955 7899999999999999999999986653 44456799999999999999999999
Q ss_pred ccccEEEEEEEecCCeE-------EEecCC----------C----------------------------------CchhH
Q 044784 157 QITNVLELDVLTGKGEF-------VTCSPQ----------K----------------------------------DSELF 185 (482)
Q Consensus 157 ~~d~v~~~~vv~~~G~~-------~~~~~~----------~----------------------------------~~dl~ 185 (482)
+.++++. ++|+++|++ +..+.. . |.|+.
T Consensus 163 ~te~vL~-~~V~~dGel~lVn~lgi~lG~~~e~il~~l~~~gy~~~~~~~~~~~~~d~~y~~~vr~v~~~~parfnaDl~ 241 (564)
T PRK11183 163 YTEMALY-AQIDEDGKLELVNHLGIDLGETPEEILTRLEDGRFDDEDVRHDGRHASDHEYAERVRDVDADTPARFNADPR 241 (564)
T ss_pred hhhhhhh-hEECCCCcEEEeeccCcccCCCHHHHHHhhhcCCCCccccCCccccCchhhHHHhhhccCCCCcccccCCHH
Confidence 9999999 999999999 443221 1 23888
Q ss_pred HhH--hcCCCCcEEEEEEEEEEeecCCceEEEEEEeCChhhHHHHHHHHHhcCCCCCCCCCCcccceEe
Q 044784 186 YAV--LGGLGQFGIITRARIVLGPAKKRVKWLRILYSDFSSFSTDQETLISTTGPSDKVMPDFLEGHLL 252 (482)
Q Consensus 186 ~~~--~g~~g~~Giit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~e~l~~~~~ 252 (482)
..+ .||.|++||| +++|++.|.|+..+.+.+.|++.+++.+..+.++..++..|. +.|+|+...+
T Consensus 242 ~LfeasGseGkLgV~-avrLdtfp~p~~~~vf~ig~n~~~~~~~~rr~il~~~~~lP~-a~Eym~r~~~ 308 (564)
T PRK11183 242 RLFEASGCAGKLAVF-AVRLDTFPAEKNTQVFYIGTNDPAVLTEIRRHILANFKNLPV-AGEYMHRDAF 308 (564)
T ss_pred HHhhccCCCceEEEE-EEEeccccCCCcceEEEEeCCCHHHHHHHHHHHHHhCCCCce-eEeecCHHHH
Confidence 888 9999999999 999999999999999999999999999999999988776676 7888887655
No 16
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold. It is predominantly found in plant cytokinin dehydrogenase 1, where it is capable of binding both FAD and cytokinin substrates. The substrate displays a 'plug-into-socket' binding mode that seals the catalytic site and precisely positions the carbon atom undergoing oxidation in close contact with the reactive locus of the flavin []. ; GO: 0019139 cytokinin dehydrogenase activity, 0050660 flavin adenine dinucleotide binding, 0009690 cytokinin metabolic process, 0055114 oxidation-reduction process; PDB: 2EXR_A 2Q4W_A 3S1E_A 1W1Q_A 2QPM_A 3C0P_A 3BW7_A 3S1C_A 1W1S_A 2QKN_A ....
Probab=99.98 E-value=2.3e-31 Score=248.37 Aligned_cols=266 Identities=52% Similarity=0.986 Sum_probs=204.5
Q ss_pred CCceEEEEEEeCChhhHHHHHHHHHhcCCCCCCCCCCcccceEeecC-CCCC-----cCCcccchhhhcccc-ccceEEE
Q 044784 209 KKRVKWLRILYSDFSSFSTDQETLISTTGPSDKVMPDFLEGHLLMNQ-SPLD-----FYPQSQRRKITFLVN-QYGILYI 281 (482)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~e~l~~~~~~~~-~~~~-----~~~~~~~~~~~~~~~-~~~~~~~ 281 (482)
|+.++|+++.|++++++.++.+.|+... -.. .+|+++++++++. ...+ +|+..+..+++.+++ .++++|+
T Consensus 1 p~~vrw~r~~Y~df~~ft~DqE~Lis~~-~~~--~~DYvEGfv~~n~~~~~~~w~s~~f~~~~~~~~~~l~~~~g~~lY~ 77 (281)
T PF09265_consen 1 PKRVRWIRLLYSDFATFTRDQERLISKP-ESG--AFDYVEGFVILNRQGLINNWRSSFFSPSDPARISSLVSENGGWLYC 77 (281)
T ss_dssp -SEEEEEEEEES-HHHHHHHHHHHHTCB-TTT--S-SEEEEEEEECCGHCCCCHCCSSSSCCCHHHHHHCHCCT-SEEEE
T ss_pred CCceEEEEeeeccHHHHHhhHHHHhcCC-CCC--CcceeceeeeecCCCCcCCccCCCCCcccccccccccccCCCEEEE
Confidence 5678999999999999999999999863 111 3799999999874 3222 466666677887877 7889999
Q ss_pred EEEEEEeCCCcc---hHHHHHHHhccccCCCCccccccchHHHHhhhhhHHHHHHHHccCCCCCccccccccccchhhhh
Q 044784 282 IEVVTYYDNKNE---AKKVKQMLKSLKGFLPGFVFEKDVTYLQFLNRVHDQEIELRKKGLWDIPHPWLNIFIPKSRITDF 358 (482)
Q Consensus 282 ~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~r~~~~~~~vp~~~~~~~ 358 (482)
+|++.+|+.... .++++.+++.|+ ..++..+..+++|.+|+++++..+..++..++|+.+|+|.+++||.+.+.+|
T Consensus 78 LE~a~~y~~~~~~~vd~~~~~LL~~L~-~~~~~~f~~DvsY~dFL~Rv~~~E~~Lr~~G~WdvPHPWlnlfvP~s~i~dF 156 (281)
T PF09265_consen 78 LEVAKYYDPPTAPDVDQEVEALLAGLS-FIPGLAFTEDVSYVDFLDRVHSSEEKLRSKGLWDVPHPWLNLFVPKSRIEDF 156 (281)
T ss_dssp EEEEEEE-TTTHHHHHHHHHHHHTT---S-TT-EEEEEEEHHHHHTCCHHHHHHHHHCTTSSS----EEEEEEHHHHHHH
T ss_pred EEEEEecCCccchhhHHHHHHHHhhcC-CCcCceeeccccHHHHHHHhhhHHHHHHhcCCccccCcceeeecchHHHHHH
Confidence 999999987642 356788999998 8899999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhccCCCCceEEEEEccCCCCCcCcceeeccCCceEEEEEeeCCC-----cchHHHHHHhhHHHHHHHHHcC
Q 044784 359 DNGVFRNILLKRNFTSSTVLVYPLLRSKWDERMSAVIAAEEEVFYFVGFLDAS-----ADNWEAFDNKNKDILQFCVNAG 433 (482)
Q Consensus 359 ~~~~~~~l~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~~~~~~~~~~~l~~~~~~~G 433 (482)
.+.+++.++. .....+.+++||+...+++...+.+.| ++..+|.+.+.+.+ ++.++.+.+.++++++.|++.|
T Consensus 157 ~~~V~~~il~-~~~~~GpiLvYP~~~~kwd~~~s~v~P-de~vfylv~lLrsa~P~~~~~~l~~l~~qN~~il~~c~~ag 234 (281)
T PF09265_consen 157 DRGVFKGILK-DDGNSGPILVYPLNRSKWDTRMSAVIP-DEDVFYLVALLRSADPSDGPDDLERLLEQNRRILEFCRKAG 234 (281)
T ss_dssp HHHCCCCCTT-TS-S-SEEEEEEEEGGGS-TTSS-----SSSEEEEEEEEE---TTSSCCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhc-cCCCCceEEEEEecccccCCCCcccCC-CCCeEEEEEEeCCCCCCCCchhHHHHHHHHHHHHHHHHHcC
Confidence 9999888864 344458999999999899988888889 89999988888764 3567888999999999999999
Q ss_pred ccceecCCCCCChhhHHHhhccchhHHHHhhhcCCCCCCCCCCCcCC
Q 044784 434 IKFKQYLGHHATKEEWIIHFGSKWNTFQQRKTRFDPRMILSPGQRIF 480 (482)
Q Consensus 434 ~~~~~y~~~~~~~~~~~~~yG~~~~~L~~iK~~~DP~nifnpgk~i~ 480 (482)
++.+.|++++.+.++|+.+||+.|+++.+.|++|||++||.|||.|+
T Consensus 235 i~~k~Yl~~~~t~~dW~~HFG~~W~~f~~~K~~yDP~~IL~PGq~IF 281 (281)
T PF09265_consen 235 IGGKQYLPHYTTQEDWRRHFGPKWERFVERKRRYDPKAILAPGQGIF 281 (281)
T ss_dssp --EEESS---SSHHHHHHHHGHHHHHHHHHHHHH-TT--B-GGG-SS
T ss_pred CceEECCCCCCCHHHHHHHhchHHHHHHHHHHhCCchhhcCCCCCCC
Confidence 99999999999999999999999999999999999999999999986
No 17
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=99.94 E-value=4.4e-27 Score=203.44 Aligned_cols=138 Identities=30% Similarity=0.457 Sum_probs=126.0
Q ss_pred ccEEEECCCHHHHHHHHHHHHhccCCCeEEEEcCCCCCCCCccCCCcEEEEcCCCcCcCCCceEEEcCCCCCccEEEEcc
Q 044784 30 PFAVLYPTSVDDIRTLIYLSYNSLFSYTIAAKGQAHSTWGQAQANDGVVVQMNSLNRFRNGTGILISGDRSSGFYADVGG 109 (482)
Q Consensus 30 p~~vv~p~~~~ev~~~v~~a~~~~~~~~~~~~g~g~~~~~~~~~~~~vvidl~~~~~~~~~~~i~~~~~~~~~~~~~v~a 109 (482)
|.+|++|++++||++++++| +++++|++++|+||++.+.+...++++|||++|| +++++|++ .++++|+|
T Consensus 1 P~~vv~P~s~~ev~~~v~~a--~~~~~~v~~~g~G~~~~~~~~~~~~ivi~~~~l~-----~i~~id~~---~~~v~v~a 70 (139)
T PF01565_consen 1 PAAVVRPKSVEEVQAIVKFA--NENGVPVRVRGGGHSWTGQSSDEGGIVIDMSRLN-----KIIEIDPE---NGTVTVGA 70 (139)
T ss_dssp ESEEEEESSHHHHHHHHHHH--HHTTSEEEEESSSTTSSSTTSSTTEEEEECTTCG-----CEEEEETT---TTEEEEET
T ss_pred CcEEEEeCCHHHHHHHHHHH--HHcCCcEEEEcCCCCcccccccCCcEEEeecccc-----cccccccc---ceeEEEec
Confidence 78999999999999999999 7999999999999999977665689999999999 47999998 49999999
Q ss_pred cccHHHHHHHHHhCCCccc-cCCCCCCccccccccccccCCCCCcCCCccccEEEEEEEecCCeEEEec
Q 044784 110 EQLWIDVLNATLTRGLSPV-SWTDYLYPTVGGTLSNAGISGHTYQKGPQITNVLELDVLTGKGEFVTCS 177 (482)
Q Consensus 110 G~~~~~l~~~l~~~g~~~~-~~~~~~~~tvGG~~~~~g~g~~~~~~G~~~d~v~~~~vv~~~G~~~~~~ 177 (482)
|++|.+|.++|.++|+.++ .+.+...+|+||++++|++|..+..||.+.|+|+++++|++||++++++
T Consensus 71 G~~~~~l~~~l~~~g~~~~~~~~~~~~~tvGG~i~~~~~g~~~~~~G~~~d~v~~~~~V~~~G~v~~~s 139 (139)
T PF01565_consen 71 GVTWGDLYEALAPRGLMLPVEPGSGIPGTVGGAIAGNGHGSGSRRYGTAADNVLSVEVVLADGEVVRCS 139 (139)
T ss_dssp TSBHHHHHHHHHHHTEEESSGGGSTTTSBHHHHHHTT-EETTHHHHCBGGGGEEEEEEEETTSSEEEEE
T ss_pred cccchhcccccccccccccccccccccceEchhhcCCCccccccccccHHHeEEEEEEEcCCCcEEEeC
Confidence 9999999999999998854 4556677899999999999999999999999999999999999999975
No 18
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=99.93 E-value=1e-24 Score=209.67 Aligned_cols=188 Identities=21% Similarity=0.221 Sum_probs=159.1
Q ss_pred CccEEEECCCHHHHHHHHHHHHhccCCCeEEEEcCCCCCCCCccCCCcEEEEcCCCcCcCCCceEEEcCCCCCccEEEEc
Q 044784 29 KPFAVLYPTSVDDIRTLIYLSYNSLFSYTIAAKGQAHSTWGQAQANDGVVVQMNSLNRFRNGTGILISGDRSSGFYADVG 108 (482)
Q Consensus 29 ~p~~vv~p~~~~ev~~~v~~a~~~~~~~~~~~~g~g~~~~~~~~~~~~vvidl~~~~~~~~~~~i~~~~~~~~~~~~~v~ 108 (482)
.++-|-+|++++|+.++|+.| ++++.++++.|.|||..+..+. +|.+|++.+|| +++++|++ .+++|||
T Consensus 49 ~aanv~yP~teaeL~~lVa~A--~~a~~kirvVg~gHSp~~l~ct-dg~lisl~~ln-----kVv~~dpe---~~tvTV~ 117 (518)
T KOG4730|consen 49 KAANVNYPKTEAELVELVAAA--TEAGKKIRVVGSGHSPSKLVCT-DGLLISLDKLN-----KVVEFDPE---LKTVTVQ 117 (518)
T ss_pred hhcccCCCCCHHHHHHHHHHH--HHcCceEEEecccCCCCcceec-cccEEEhhhhc-----cceeeCch---hceEEec
Confidence 344577799999999999999 8999999999999999988776 67999999999 59999999 5999999
Q ss_pred ccccHHHHHHHHHhCCCccccCCCCCCccccccccccccCCCCCc-CCCccccEEEEEEEecCCeEEEecCCCCchhHHh
Q 044784 109 GEQLWIDVLNATLTRGLSPVSWTDYLYPTVGGTLSNAGISGHTYQ-KGPQITNVLELDVLTGKGEFVTCSPQKDSELFYA 187 (482)
Q Consensus 109 aG~~~~~l~~~l~~~g~~~~~~~~~~~~tvGG~~~~~g~g~~~~~-~G~~~d~v~~~~vv~~~G~~~~~~~~~~~dl~~~ 187 (482)
+|+++.||.+++.+.|++++..|+...++|||.++++++| .+.. |+......+-..++.++|.++.++++..|++|+|
T Consensus 118 aGirlrQLie~~~~~GlsL~~~~si~e~sVgGii~TGaHG-SS~~vH~~v~~i~~v~~~~~~~G~v~~Ls~e~dpe~F~A 196 (518)
T KOG4730|consen 118 AGIRLRQLIEELAKLGLSLPNAPSISEQSVGGIISTGAHG-SSLWVHDYVSEIISVSPITPADGFVVVLSEEKDPELFNA 196 (518)
T ss_pred cCcCHHHHHHHHHhcCccccCCCceecceeeeEEecccCC-CccccCcccceeEEEeeeccCCceEEEecccCCHHHHhh
Confidence 9999999999999999999999999999999999997554 4444 4444444444555567999999999999999999
Q ss_pred HhcCCCCcEEEEEEEEEEeecCCceEEEEEEeCChhhHHHHHH
Q 044784 188 VLGGLGQFGIITRARIVLGPAKKRVKWLRILYSDFSSFSTDQE 230 (482)
Q Consensus 188 ~~g~~g~~Giit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (482)
.+.|.|-+|||.++||++.|..+...+.. +.+..+.+.+..
T Consensus 197 AkvSLG~LGVIs~VTl~~vp~Fk~s~t~~--v~n~~dl~~d~~ 237 (518)
T KOG4730|consen 197 AKVSLGVLGVISQVTLSVVPAFKRSLTYV--VTNDSDLFKDWK 237 (518)
T ss_pred hhhcccceeEEEEEEEEEEecceeeeEEE--EechHHHHHHHH
Confidence 99999999999999999999998654443 444555444433
No 19
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.92 E-value=1.3e-24 Score=210.78 Aligned_cols=164 Identities=21% Similarity=0.234 Sum_probs=139.0
Q ss_pred hhcCCcCCCCccEEEECCCHHHHHHHHHHHHhccCCCeEEEEcCCCCCCCCccCCCcEEEEcCC-CcCcCCCceEEEcCC
Q 044784 20 IDYGHIIKEKPFAVLYPTSVDDIRTLIYLSYNSLFSYTIAAKGQAHSTWGQAQANDGVVVQMNS-LNRFRNGTGILISGD 98 (482)
Q Consensus 20 ~~~~~~~~~~p~~vv~p~~~~ev~~~v~~a~~~~~~~~~~~~g~g~~~~~~~~~~~~vvidl~~-~~~~~~~~~i~~~~~ 98 (482)
.++.+ +.+.|..++.|.|++||++++++| +++++|++++|+|||+...+.+.+|++|||++ |+ .++++.
T Consensus 22 ~~t~~-igg~a~~vv~P~s~edv~~~v~~a--~~~~~p~~v~GgGsnll~~d~g~~gvvI~l~~~l~------~i~~~~- 91 (298)
T PRK13905 22 YTSFR-VGGPADYLVEPADIEDLQEFLKLL--KENNIPVTVLGNGSNLLVRDGGIRGVVIRLGKGLN------EIEVEG- 91 (298)
T ss_pred cceee-cCceEeEEEeCCCHHHHHHHHHHH--HHcCCCEEEEeCCceEEecCCCcceEEEEecCCcc------eEEecC-
Confidence 35544 678899999999999999999999 79999999999999988655544699999999 97 455432
Q ss_pred CCCccEEEEcccccHHHHHHHHHhCCCc----cccCCCCCCccccccccccccCCCCCcCC-CccccEEEEEEEecCCeE
Q 044784 99 RSSGFYADVGGEQLWIDVLNATLTRGLS----PVSWTDYLYPTVGGTLSNAGISGHTYQKG-PQITNVLELDVLTGKGEF 173 (482)
Q Consensus 99 ~~~~~~~~v~aG~~~~~l~~~l~~~g~~----~~~~~~~~~~tvGG~~~~~g~g~~~~~~G-~~~d~v~~~~vv~~~G~~ 173 (482)
.+++|+||++|.+|.++|.++|+. +...|+ ||||++.+|+ | .|| .+.|+|+++++|++||++
T Consensus 92 ----~~v~v~aG~~~~~L~~~l~~~Gl~gle~~~gipG----TVGGai~~Na-G----~~G~~~~d~v~~v~vv~~~G~~ 158 (298)
T PRK13905 92 ----NRITAGAGAPLIKLARFAAEAGLSGLEFAAGIPG----TVGGAVFMNA-G----AYGGETADVLESVEVLDRDGEI 158 (298)
T ss_pred ----CEEEEECCCcHHHHHHHHHHcCCCcchhccCCCc----chhHHHHHcC-C----cCceEhheeEEEEEEEeCCCCE
Confidence 589999999999999999999984 344443 9999999764 2 255 799999999999999999
Q ss_pred EEecCCCCchhHHhHhcCCCC--cEEEEEEEEEEeecC
Q 044784 174 VTCSPQKDSELFYAVLGGLGQ--FGIITRARIVLGPAK 209 (482)
Q Consensus 174 ~~~~~~~~~dl~~~~~g~~g~--~Giit~~~~~~~~~~ 209 (482)
+++++ .|++|++|++... +||||+++|+++|..
T Consensus 159 ~~~~~---~e~~~~yR~s~~~~~~gII~~~~l~l~~~~ 193 (298)
T PRK13905 159 KTLSN---EELGFGYRHSALQEEGLIVLSATFQLEPGD 193 (298)
T ss_pred EEEEH---HHcCCcCccccCCCCCEEEEEEEEEEcCCC
Confidence 99875 5999999998754 899999999999974
No 20
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.88 E-value=2.1e-22 Score=194.26 Aligned_cols=166 Identities=17% Similarity=0.138 Sum_probs=136.6
Q ss_pred hhcCCcCCCCccEEEECCCHHHHHHHHHHHHhccCCCeEEEEcCCCCCCCCccCCCcEEEEcCCCcCcCCCceEEEcCCC
Q 044784 20 IDYGHIIKEKPFAVLYPTSVDDIRTLIYLSYNSLFSYTIAAKGQAHSTWGQAQANDGVVVQMNSLNRFRNGTGILISGDR 99 (482)
Q Consensus 20 ~~~~~~~~~~p~~vv~p~~~~ev~~~v~~a~~~~~~~~~~~~g~g~~~~~~~~~~~~vvidl~~~~~~~~~~~i~~~~~~ 99 (482)
.++.+ +.+.|.++++|.|++||++++++| +++++|++++|+|||+...+...+|++|+++++. ..+.++.
T Consensus 27 ~tt~~-igg~a~~~v~p~~~edl~~~v~~a--~~~~ip~~vlGgGSNllv~d~g~~gvVI~l~~~~-----~~i~~~~-- 96 (302)
T PRK14652 27 RTAVR-VGGPADLLVRPADPDALSALLRAV--RELGVPLSILGGGANTLVADAGVRGVVLRLPQDF-----PGESTDG-- 96 (302)
T ss_pred ccEee-cCCcceEEEEcCCHHHHHHHHHHH--HHCCCcEEEEcCCcceeecCCCEeeEEEEecCCc-----ceEEecC--
Confidence 35545 788999999999999999999999 7999999999999999755444458999998742 2455442
Q ss_pred CCccEEEEcccccHHHHHHHHHhCCCc----cccCCCCCCccccccccccccCCCCCcCCCccccEEEEEEEecCCeEEE
Q 044784 100 SSGFYADVGGEQLWIDVLNATLTRGLS----PVSWTDYLYPTVGGTLSNAGISGHTYQKGPQITNVLELDVLTGKGEFVT 175 (482)
Q Consensus 100 ~~~~~~~v~aG~~~~~l~~~l~~~g~~----~~~~~~~~~~tvGG~~~~~g~g~~~~~~G~~~d~v~~~~vv~~~G~~~~ 175 (482)
.+++|+||+.|.+|.+++.++|+. +...|+ ||||++.+|+. ..+|.+.|+|.++++|+++| +.+
T Consensus 97 ---~~v~v~AG~~~~~L~~~~~~~GL~GlE~l~gIPG----TvGGav~mNaG----a~ggei~d~v~~v~vv~~~G-~~~ 164 (302)
T PRK14652 97 ---GRLVLGAGAPISRLPARAHAHGLVGMEFLAGIPG----TLGGAVAMNAG----TKLGEMKDVVTAVELATADG-AGF 164 (302)
T ss_pred ---CEEEEECCCcHHHHHHHHHHcCCcccccccCCCc----chhHHHHHcCC----CCceEhhheEEEEEEECCCC-cEE
Confidence 489999999999999999999996 444444 99999998842 46788999999999999999 555
Q ss_pred ecCCCCchhHHhHhcCC-CCcEEEEEEEEEEeecCC
Q 044784 176 CSPQKDSELFYAVLGGL-GQFGIITRARIVLGPAKK 210 (482)
Q Consensus 176 ~~~~~~~dl~~~~~g~~-g~~Giit~~~~~~~~~~~ 210 (482)
..+ .|+.|++|.+. +..||||+++|+++|.+.
T Consensus 165 ~~~---~e~~f~YR~s~~~~~~II~~a~~~L~~~~~ 197 (302)
T PRK14652 165 VPA---AALGYAYRTCRLPPGAVITRVEVRLRPGDV 197 (302)
T ss_pred eeh---hhcCcccceeccCCCeEEEEEEEEEecCCH
Confidence 554 59999999874 334899999999999653
No 21
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.87 E-value=6.8e-22 Score=191.28 Aligned_cols=158 Identities=21% Similarity=0.267 Sum_probs=135.6
Q ss_pred CCCCccEEEECCCHHHHHHHHHHHHhccCCCeEEEEcCCCCCCCCccCCCcEEEEcCCCcCcCCCceEEEcCCCCCccEE
Q 044784 26 IKEKPFAVLYPTSVDDIRTLIYLSYNSLFSYTIAAKGQAHSTWGQAQANDGVVVQMNSLNRFRNGTGILISGDRSSGFYA 105 (482)
Q Consensus 26 ~~~~p~~vv~p~~~~ev~~~v~~a~~~~~~~~~~~~g~g~~~~~~~~~~~~vvidl~~~~~~~~~~~i~~~~~~~~~~~~ 105 (482)
+.+.|.++++|.|++||++++++| +++++|++++|+|||+...+...+|++|+|++|+ .++++. .++
T Consensus 33 igg~a~~vv~p~~~edv~~~l~~a--~~~~ip~~v~GgGSNll~~d~g~~GvvI~l~~l~------~i~~~~-----~~v 99 (305)
T PRK12436 33 VGGKADVFVAPTNYDEIQEVIKYA--NKYNIPVTFLGNGSNVIIKDGGIRGITVSLIHIT------GVTVTG-----TTI 99 (305)
T ss_pred cCceEEEEEecCCHHHHHHHHHHH--HHcCCCEEEEcCCeEEEEeCCCeeEEEEEeCCcC------cEEEeC-----CEE
Confidence 678899999999999999999999 7999999999999999855544469999999997 567763 479
Q ss_pred EEcccccHHHHHHHHHhCCCc----cccCCCCCCccccccccccccCCCCCcCC-CccccEEEEEEEecCCeEEEecCCC
Q 044784 106 DVGGEQLWIDVLNATLTRGLS----PVSWTDYLYPTVGGTLSNAGISGHTYQKG-PQITNVLELDVLTGKGEFVTCSPQK 180 (482)
Q Consensus 106 ~v~aG~~~~~l~~~l~~~g~~----~~~~~~~~~~tvGG~~~~~g~g~~~~~~G-~~~d~v~~~~vv~~~G~~~~~~~~~ 180 (482)
+|+||+.|.+|.+++.++|+. +...|+ ||||++.+|+. . || .+.|.+.+++++++||+++++++
T Consensus 100 ~v~aG~~~~~L~~~~~~~gl~Gle~~~giPG----tVGGav~~NAG-a----yG~~~~dvl~~v~vv~~~G~v~~~~~-- 168 (305)
T PRK12436 100 VAQCGAAIIDVSRIALDHNLTGLEFACGIPG----SVGGALYMNAG-A----YGGEISFVLTEAVVMTGDGELRTLTK-- 168 (305)
T ss_pred EEEeCCcHHHHHHHHHHcCCccchhhcCCcc----chhHHHHhcCc-c----chhehheeeeEEEEEeCCCCEEEEEH--
Confidence 999999999999999999986 444444 89999997743 2 66 57788889999999999999987
Q ss_pred CchhHHhHhcCC--CCcEEEEEEEEEEeec
Q 044784 181 DSELFYAVLGGL--GQFGIITRARIVLGPA 208 (482)
Q Consensus 181 ~~dl~~~~~g~~--g~~Giit~~~~~~~~~ 208 (482)
.|+.|++|.|. ....||++++|++.+.
T Consensus 169 -~e~~f~YR~s~~~~~~~iil~a~~~l~~~ 197 (305)
T PRK12436 169 -EAFEFGYRKSVFANNHYIILEARFELEEG 197 (305)
T ss_pred -HHhcCcCCCCcCCCCCEEEEEEEEEEcCC
Confidence 58999999983 4467999999999875
No 22
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase. This model describes MurB, UDP-N-acetylenolpyruvoylglucosamine reductase, which is also called UDP-N-acetylmuramate dehydrogenase. It is part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide that is a precursor of bacterial peptidoglycan.
Probab=99.85 E-value=6.1e-21 Score=183.14 Aligned_cols=158 Identities=17% Similarity=0.246 Sum_probs=135.2
Q ss_pred CCCCccEEEECCCHHHHHHHHHHHHhccCCCeEEEEcCCCCCCCCccCCCcEEEEcCCCcCcCCCceEEEcCCCCCccEE
Q 044784 26 IKEKPFAVLYPTSVDDIRTLIYLSYNSLFSYTIAAKGQAHSTWGQAQANDGVVVQMNSLNRFRNGTGILISGDRSSGFYA 105 (482)
Q Consensus 26 ~~~~p~~vv~p~~~~ev~~~v~~a~~~~~~~~~~~~g~g~~~~~~~~~~~~vvidl~~~~~~~~~~~i~~~~~~~~~~~~ 105 (482)
+.+.|..+++|.|++||++++++| +++++|++++|+|||+...+...+|++|++++|+ .+.++++ .++
T Consensus 9 igg~a~~~v~p~s~edl~~~l~~a--~~~~~p~~vlGgGSNll~~d~~~~gvvi~l~~~~------~~~~~~~----~~v 76 (284)
T TIGR00179 9 IGGNARHIVCPESIEQLVNVLDNA--KEEDQPLLILGEGSNLLILDDGRGGVIINLGKGI------DIEDDEG----EYV 76 (284)
T ss_pred cCceeeEEEEeCCHHHHHHHHHHH--HHcCCCEEEEecceEEEEccCCcCeEEEECCCCc------eEEEecC----CEE
Confidence 678899999999999999999999 7999999999999999977766789999999997 3455654 589
Q ss_pred EEcccccHHHHHHHHHhCCCc----cccCCCCCCccccccccccccCCCCCcCCC-ccccEEEEEEEecCCeEEEecCCC
Q 044784 106 DVGGEQLWIDVLNATLTRGLS----PVSWTDYLYPTVGGTLSNAGISGHTYQKGP-QITNVLELDVLTGKGEFVTCSPQK 180 (482)
Q Consensus 106 ~v~aG~~~~~l~~~l~~~g~~----~~~~~~~~~~tvGG~~~~~g~g~~~~~~G~-~~d~v~~~~vv~~~G~~~~~~~~~ 180 (482)
+|+||+.|.+|.+++.++|+. +...|+ ||||++.+|+. .||. +.|.|+++++|+++|++++.++
T Consensus 77 ~v~aG~~~~~l~~~~~~~Gl~GlE~l~giPG----tvGGai~mNAG-----ayG~~i~d~l~~v~vv~~~G~~~~~~~-- 145 (284)
T TIGR00179 77 HVGGGENWHKLVKYALKNGLSGLEFLAGIPG----TVGGAVIMNAG-----AYGVEISEVLVYATILLATGKTEWLTN-- 145 (284)
T ss_pred EEEcCCcHHHHHHHHHHCCCcccccCCCCCc----hHHHHHHHhcc-----cchhehhheEEEEEEEeCCCCEEEEEH--
Confidence 999999999999999999994 666665 89999997742 2666 4467899999999999999987
Q ss_pred CchhHHhHhcCC--CCc-EEEEEEEEEEee
Q 044784 181 DSELFYAVLGGL--GQF-GIITRARIVLGP 207 (482)
Q Consensus 181 ~~dl~~~~~g~~--g~~-Giit~~~~~~~~ 207 (482)
.|+.+++|.|. ... .||++++|++.+
T Consensus 146 -~~~~f~YR~S~f~~~~~~iil~a~~~l~~ 174 (284)
T TIGR00179 146 -EQLGFGYRTSIFQHKYVGLVLKAEFQLTL 174 (284)
T ss_pred -HHccccCCccccCCCCcEEEEEEEEEecc
Confidence 58999999875 323 799999999944
No 23
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.85 E-value=6.9e-21 Score=184.24 Aligned_cols=158 Identities=15% Similarity=0.176 Sum_probs=135.0
Q ss_pred CCCCccEEEECCCHHHHHHHHHHHHhccCCCeEEEEcCCCCCCCCccCCCcEEEEcCCCcCcCCCceEEEcCCCCCccEE
Q 044784 26 IKEKPFAVLYPTSVDDIRTLIYLSYNSLFSYTIAAKGQAHSTWGQAQANDGVVVQMNSLNRFRNGTGILISGDRSSGFYA 105 (482)
Q Consensus 26 ~~~~p~~vv~p~~~~ev~~~v~~a~~~~~~~~~~~~g~g~~~~~~~~~~~~vvidl~~~~~~~~~~~i~~~~~~~~~~~~ 105 (482)
..+.+.+++.|.|++||++++++| +++++|++++|+|||+...+...+|+||++++|+ .++++. .++
T Consensus 33 iGG~A~~~v~p~~~edv~~~v~~a--~~~~ip~~vlGgGSNll~~d~g~~GvvI~l~~l~------~i~~~~-----~~v 99 (307)
T PRK13906 33 TGGNADFYITPTKNEEVQAVVKYA--YQNEIPVTYLGNGSNIIIREGGIRGIVISLLSLD------HIEVSD-----DAI 99 (307)
T ss_pred cCceeEEEEEcCCHHHHHHHHHHH--HHcCCCEEEEcCceeEeecCCCcceEEEEecCcc------ceEEeC-----CEE
Confidence 567899999999999999999999 7999999999999999865554569999999998 567664 379
Q ss_pred EEcccccHHHHHHHHHhCCCc----cccCCCCCCccccccccccccCCCCCcC-CCccccEEEEEEEecCCeEEEecCCC
Q 044784 106 DVGGEQLWIDVLNATLTRGLS----PVSWTDYLYPTVGGTLSNAGISGHTYQK-GPQITNVLELDVLTGKGEFVTCSPQK 180 (482)
Q Consensus 106 ~v~aG~~~~~l~~~l~~~g~~----~~~~~~~~~~tvGG~~~~~g~g~~~~~~-G~~~d~v~~~~vv~~~G~~~~~~~~~ 180 (482)
+|+||+.|.+|.+++.++|+. +.+.|+ ||||++.+|+ |. | |.++|+|+++++|+++|+++++++
T Consensus 100 ~v~aG~~~~~l~~~~~~~Gl~GlE~~~gIPG----tVGGav~mNa-Ga----yGg~i~D~l~~v~vv~~~G~~~~~~~-- 168 (307)
T PRK13906 100 IAGSGAAIIDVSRVARDYALTGLEFACGIPG----SIGGAVYMNA-GA----YGGEVKDCIDYALCVNEQGSLIKLTT-- 168 (307)
T ss_pred EEECCCcHHHHHHHHHHcCCccchhhcCCCc----cHhHHHHhhC-Cc----chhhhhhheeEEEEEeCCCCEEEEEH--
Confidence 999999999999999999996 444443 8999999874 33 4 589999999999999999999987
Q ss_pred CchhHHhHhcCC--CCcEEEEEEEEEEeec
Q 044784 181 DSELFYAVLGGL--GQFGIITRARIVLGPA 208 (482)
Q Consensus 181 ~~dl~~~~~g~~--g~~Giit~~~~~~~~~ 208 (482)
.|+.+++|.|. ..--||++++|++.|.
T Consensus 169 -~e~~f~YR~S~~~~~~~ii~~~~~~l~~~ 197 (307)
T PRK13906 169 -KELELDYRNSIIQKEHLVVLEAAFTLAPG 197 (307)
T ss_pred -HHccCcCCcccCCCCCEEEEEEEEEECCC
Confidence 58999999875 2235999999999874
No 24
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.84 E-value=1.6e-20 Score=184.17 Aligned_cols=165 Identities=15% Similarity=0.197 Sum_probs=139.7
Q ss_pred hhcCCcCCCCccEEEECCCHHHHHHHHHHHHhccCCCeEEEEcCCCCCCCCccCCCcEEEEcCCCcCcCCCceEEEcCCC
Q 044784 20 IDYGHIIKEKPFAVLYPTSVDDIRTLIYLSYNSLFSYTIAAKGQAHSTWGQAQANDGVVVQMNSLNRFRNGTGILISGDR 99 (482)
Q Consensus 20 ~~~~~~~~~~p~~vv~p~~~~ev~~~v~~a~~~~~~~~~~~~g~g~~~~~~~~~~~~vvidl~~~~~~~~~~~i~~~~~~ 99 (482)
.++.+ +.+.|..++.|.|++||++++++| +.+++|++++|+|||+...+...+|+||+++ ++ .++++.+
T Consensus 24 ~tt~~-iGg~A~~~~~p~s~edl~~~l~~a--~~~~~p~~vlGgGSNlLv~D~g~~GvVI~l~-~~------~i~i~~~- 92 (363)
T PRK13903 24 LTTLR-VGGPARRLVTCTSTEELVAAVREL--DAAGEPLLVLGGGSNLVIADDGFDGTVVRVA-TR------GVTVDCG- 92 (363)
T ss_pred ccEee-cCccceEEEEeCCHHHHHHHHHHH--HHCCCCEEEEeCCeeEeECCCCccEEEEEeC-CC------cEEEeCC-
Confidence 35545 778899999999999999999999 7999999999999999866655579999997 45 5677654
Q ss_pred CCccEEEEcccccHHHHHHHHHhCCCc----cccCCCCCCccccccccccccCCCCCcCC-CccccEEEEEEEecC-CeE
Q 044784 100 SSGFYADVGGEQLWIDVLNATLTRGLS----PVSWTDYLYPTVGGTLSNAGISGHTYQKG-PQITNVLELDVLTGK-GEF 173 (482)
Q Consensus 100 ~~~~~~~v~aG~~~~~l~~~l~~~g~~----~~~~~~~~~~tvGG~~~~~g~g~~~~~~G-~~~d~v~~~~vv~~~-G~~ 173 (482)
..+++|+||+.|.+|.+++.++|+. +..+|+ ||||++.+|+ |. || .+.|.|.++++++.+ |++
T Consensus 93 --~~~v~vgAG~~~~~l~~~a~~~GL~GlE~laGIPG----TVGGAv~mNa-Ga----yG~ei~D~l~sV~vvd~~~G~~ 161 (363)
T PRK13903 93 --GGLVRAEAGAVWDDVVARTVEAGLGGLECLSGIPG----SAGATPVQNV-GA----YGQEVSDTITRVRLLDRRTGEV 161 (363)
T ss_pred --CCEEEEEcCCCHHHHHHHHHHcCCccccccCCCCc----chhhHhhcCC-Ch----hHHHHhhhEeEEEEEECCCCEE
Confidence 3689999999999999999999998 566665 9999999763 33 34 488999999999965 999
Q ss_pred EEecCCCCchhHHhHhcCC---CCcEEEEEEEEEEeecC
Q 044784 174 VTCSPQKDSELFYAVLGGL---GQFGIITRARIVLGPAK 209 (482)
Q Consensus 174 ~~~~~~~~~dl~~~~~g~~---g~~Giit~~~~~~~~~~ 209 (482)
++.+. .|++|++|+|. ++++|||+++|++.|..
T Consensus 162 ~~~~~---~el~f~YR~S~f~~~~~~IIl~a~f~L~~~~ 197 (363)
T PRK13903 162 RWVPA---ADLGFGYRTSVLKHSDRAVVLEVEFQLDPSG 197 (363)
T ss_pred EEEEH---HHcceeccccccCCCCCEEEEEEEEEEEcCC
Confidence 99875 69999999973 35899999999999874
No 25
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only]
Probab=99.84 E-value=5.1e-20 Score=173.64 Aligned_cols=167 Identities=21% Similarity=0.291 Sum_probs=135.1
Q ss_pred EEEEcCCCcCcCCCceEEEcCCCCCccEEEEcccccHHHHHHHHHhCCCccccCCCCCCccccccccccccCCCCCcCCC
Q 044784 77 VVVQMNSLNRFRNGTGILISGDRSSGFYADVGGEQLWIDVLNATLTRGLSPVSWTDYLYPTVGGTLSNAGISGHTYQKGP 156 (482)
Q Consensus 77 vvidl~~~~~~~~~~~i~~~~~~~~~~~~~v~aG~~~~~l~~~l~~~g~~~~~~~~~~~~tvGG~~~~~g~g~~~~~~G~ 156 (482)
.-|++..|. .++++|.+ .++|+|||+|+.+||.++|.+.|+++++.+..++.|+||.|.+.|+-+.|++||+
T Consensus 104 ~~v~id~l~-----dILeld~e---kmtvrvEP~Vtmgqis~~lip~g~tLaV~~EldDlTvGGLinG~Gies~ShkyGl 175 (543)
T KOG1262|consen 104 HQVPIDELH-----DILELDEE---KMTVRVEPLVTMGQISKFLIPKGYTLAVLPELDDLTVGGLINGVGIESSSHKYGL 175 (543)
T ss_pred ccCCHHHHh-----HHHhcchh---cceEEecCCccHHHHHHHhccCCceeeeecccccceecceeeecccccccchhhh
Confidence 345555443 28899999 4999999999999999999999999999999999999999999999999999999
Q ss_pred ccccEEEEEEEecCCeEEEecCC-CCchhHHhHhcCCCCcEEEEEEEEEEeecCCceEEEEEEeCChhhHHHHHHHHHhc
Q 044784 157 QITNVLELDVLTGKGEFVTCSPQ-KDSELFYAVLGGLGQFGIITRARIVLGPAKKRVKWLRILYSDFSSFSTDQETLIST 235 (482)
Q Consensus 157 ~~d~v~~~~vv~~~G~~~~~~~~-~~~dl~~~~~g~~g~~Giit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (482)
..+.+.+.|||++||+++++.++ +++|||.|+.+|+|++|....+++|+.|..+.+....+....+++..+.+.++...
T Consensus 176 fq~~~~aYEvVladGelv~~t~dne~sdLfyaiPWSqGTlgfLVaatiriIkvK~Yvkltyip~~~l~e~c~k~~e~~~d 255 (543)
T KOG1262|consen 176 FQHICTAYEVVLADGELVRVTPDNEHSDLFYAIPWSQGTLGFLVAATIRIIKVKKYVKLTYIPVHGLDEYCKKITELSGD 255 (543)
T ss_pred HHhhhheeEEEecCCeEEEecCCcccCceEEEcccccCchheeeeeEEEEEeccceEEEEEEecccHHHHHHHHHhhccc
Confidence 99999999999999999999877 89999999999999999999999999999987654444444555444433333222
Q ss_pred CCCCCCCCCCcccceEe
Q 044784 236 TGPSDKVMPDFLEGHLL 252 (482)
Q Consensus 236 ~g~~~~~~~e~l~~~~~ 252 (482)
+....+.++++.+..+
T Consensus 256 -sdkntk~~dfvE~liy 271 (543)
T KOG1262|consen 256 -SDKNTKNADFVEGLIY 271 (543)
T ss_pred -ccccccccchhheeee
Confidence 1211113466666544
No 26
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.79 E-value=8.9e-19 Score=167.99 Aligned_cols=162 Identities=17% Similarity=0.145 Sum_probs=137.0
Q ss_pred hhcCCcCCCCccEEEECCCHHHHHHHHHHHHhccCCCeEEEEcCCCCCCCCccCCCcEEEEcCCCcCcCCCceEEEcCCC
Q 044784 20 IDYGHIIKEKPFAVLYPTSVDDIRTLIYLSYNSLFSYTIAAKGQAHSTWGQAQANDGVVVQMNSLNRFRNGTGILISGDR 99 (482)
Q Consensus 20 ~~~~~~~~~~p~~vv~p~~~~ev~~~v~~a~~~~~~~~~~~~g~g~~~~~~~~~~~~vvidl~~~~~~~~~~~i~~~~~~ 99 (482)
.++.+ +.+.+..++.|.+.+|+++++++| ++ ++|+.++|+|+|+...+.+.+|+||.+++|+ .++++.
T Consensus 25 ~tt~~-iGG~A~~~v~p~s~eel~~~~~~~--~~-~~p~~vlG~GSNlLv~d~g~~gvVI~l~~~~------~i~i~~-- 92 (297)
T PRK14653 25 HVSFK-IGGPVPLFAIPNSTNGFIETINLL--KE-GIEVKILGNGTNVLPKDEPMDFVVVSTERLD------DIFVDN-- 92 (297)
T ss_pred cCEee-eCcEEEEEEecCCHHHHHHHHHHH--hc-CCCEEEEcCCeeEEEecCCccEEEEEeCCcC------ceEEeC--
Confidence 34544 788899999999999999999999 67 9999999999999988877679999998897 567764
Q ss_pred CCccEEEEcccccHHHHHHHHHhCCCc----cccCCCCCCccccccccccccCCCCCcCCC-ccccEEEEEEEecCCeEE
Q 044784 100 SSGFYADVGGEQLWIDVLNATLTRGLS----PVSWTDYLYPTVGGTLSNAGISGHTYQKGP-QITNVLELDVLTGKGEFV 174 (482)
Q Consensus 100 ~~~~~~~v~aG~~~~~l~~~l~~~g~~----~~~~~~~~~~tvGG~~~~~g~g~~~~~~G~-~~d~v~~~~vv~~~G~~~ 174 (482)
..++|+||+.|.+|..++.++|+. +..+|+ ||||++.+|+.. ||. +.|.|.++++++ +|+++
T Consensus 93 ---~~v~v~AG~~l~~L~~~~~~~GL~GlE~l~gIPG----TVGGAv~mNAGa-----yG~ei~d~l~~V~~~d-~g~v~ 159 (297)
T PRK14653 93 ---DKIICESGLSLKKLCLVAAKNGLSGFENAYGIPG----SVGGAVYMNAGA-----YGWETAENIVEVVAYD-GKKII 159 (297)
T ss_pred ---CEEEEeCCCcHHHHHHHHHHCCCcchhhhcCCch----hHHHHHHHhCcc-----CchhhheeEEEEEEEC-CCEEE
Confidence 379999999999999999999996 566666 899999977432 676 999999999999 78899
Q ss_pred EecCCCCchhHHhHhcCC----CCcEEEEEEEEEEeecCC
Q 044784 175 TCSPQKDSELFYAVLGGL----GQFGIITRARIVLGPAKK 210 (482)
Q Consensus 175 ~~~~~~~~dl~~~~~g~~----g~~Giit~~~~~~~~~~~ 210 (482)
+.++ .|+-+.+|.+. +.+ |||+++|++.|..+
T Consensus 160 ~~~~---~e~~f~YR~S~~~~~~~~-iI~~a~f~L~~~~~ 195 (297)
T PRK14653 160 RLGK---NEIKFSYRNSIFKEEKDL-IILRVTFKLKKGNK 195 (297)
T ss_pred EEch---hhccccCccccCCCCCcE-EEEEEEEEEecCCH
Confidence 8876 47888888763 233 99999999998643
No 27
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.79 E-value=7.2e-19 Score=169.44 Aligned_cols=170 Identities=15% Similarity=0.070 Sum_probs=137.8
Q ss_pred hcCCcCCCCccEEEECCCHHHHHHHHHHHHhccCCCeEEEEcCCCCCCCCccCCCcEEEEcCCCcCcCCCceEEEcCCCC
Q 044784 21 DYGHIIKEKPFAVLYPTSVDDIRTLIYLSYNSLFSYTIAAKGQAHSTWGQAQANDGVVVQMNSLNRFRNGTGILISGDRS 100 (482)
Q Consensus 21 ~~~~~~~~~p~~vv~p~~~~ev~~~v~~a~~~~~~~~~~~~g~g~~~~~~~~~~~~vvidl~~~~~~~~~~~i~~~~~~~ 100 (482)
++.+ +.+.+..++.|.+++|+++++++| +++++|+.++|+|||+...+.+.+|+||++++++- .+..+.+
T Consensus 13 tt~~-iGg~a~~~v~p~~~~dl~~~l~~~--~~~~ip~~vlG~GSNlL~~d~g~~GvVI~l~~~~~-----~i~~~~~-- 82 (295)
T PRK14649 13 TSWR-IGGPARYFVEPTTPDEAIAAAAWA--EQRQLPLFWLGGGSNLLVRDEGFDGLVARYRGQRW-----ELHEHGD-- 82 (295)
T ss_pred cEee-eCceeeEEEEcCCHHHHHHHHHHH--HHCCCCEEEEecceeEEEeCCCcCeEEEEecCCCc-----EEEEeCC--
Confidence 4444 788899999999999999999999 79999999999999999888777899999988631 3445554
Q ss_pred CccEEEEcccccHHHHHHHHHhCCCc-cccCCCCCCccccccccccccCCCCCcCCCccccEEEEEEEecCCeEEEecCC
Q 044784 101 SGFYADVGGEQLWIDVLNATLTRGLS-PVSWTDYLYPTVGGTLSNAGISGHTYQKGPQITNVLELDVLTGKGEFVTCSPQ 179 (482)
Q Consensus 101 ~~~~~~v~aG~~~~~l~~~l~~~g~~-~~~~~~~~~~tvGG~~~~~g~g~~~~~~G~~~d~v~~~~vv~~~G~~~~~~~~ 179 (482)
..+++|+||+.|.+|.+++.++|+. +-...+.++ ||||++.+|+ |. ..+.+.|.|.++++++.+|++++.++
T Consensus 83 -~~~v~v~AG~~~~~l~~~~~~~GL~GlE~l~GIPG-TvGGa~~mNa-Ga---yg~ei~d~l~~V~~~~~~g~~~~~~~- 155 (295)
T PRK14649 83 -TAEVWVEAGAPMAGTARRLAAQGWAGLEWAEGLPG-TIGGAIYGNA-GC---YGGDTATVLIRAWLLLNGSECVEWSV- 155 (295)
T ss_pred -cEEEEEEcCCcHHHHHHHHHHcCCccccccCCCCc-chhHHHHhhc-cc---cceEhheeEEEEEEEeCCCCEEEEeH-
Confidence 2589999999999999999999998 222222333 9999888663 22 23569999999999999999999976
Q ss_pred CCchhHHhHhcCC--CC--------cEEEEEEEEEEeecC
Q 044784 180 KDSELFYAVLGGL--GQ--------FGIITRARIVLGPAK 209 (482)
Q Consensus 180 ~~~dl~~~~~g~~--g~--------~Giit~~~~~~~~~~ 209 (482)
.|+++++|.|. .. --||++++|++.|..
T Consensus 156 --~el~f~YR~S~~~~~~~~~~~~~~~ii~~~~~~l~~~~ 193 (295)
T PRK14649 156 --HDFAYGYRTSVLKQLRADGITWRPPLVLAARFRLHRDD 193 (295)
T ss_pred --HHcCcccceeecccccccccccCCeEEEEEEEEECCCC
Confidence 49999999873 21 239999999998864
No 28
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.74 E-value=1e-17 Score=160.08 Aligned_cols=166 Identities=14% Similarity=0.069 Sum_probs=140.0
Q ss_pred hhcCCcCCCCccEEEECCCHHHHHHHHHHHHhccCCCeEEEEcCCCCCCCCccC-CCcEEEEcCCCcCcCCCceEEEcCC
Q 044784 20 IDYGHIIKEKPFAVLYPTSVDDIRTLIYLSYNSLFSYTIAAKGQAHSTWGQAQA-NDGVVVQMNSLNRFRNGTGILISGD 98 (482)
Q Consensus 20 ~~~~~~~~~~p~~vv~p~~~~ev~~~v~~a~~~~~~~~~~~~g~g~~~~~~~~~-~~~vvidl~~~~~~~~~~~i~~~~~ 98 (482)
.++.+ +.+.+..++.|.|.+|++++++++ +++++|+.+.|+|+|+...+.+ .+|+||.+.+|+ .++++.+
T Consensus 24 ~tt~~-iGG~A~~~~~p~~~~eL~~~l~~~--~~~~~p~~vlG~GSNlLv~D~g~~~g~vi~~~~~~------~i~~~~~ 94 (302)
T PRK14650 24 YTTYK-IGGISKLFLTPKTIKDAEHIFKAA--IEEKIKIFILGGGSNILINDEEEIDFPIIYTGHLN------KIEIHDN 94 (302)
T ss_pred cceee-eCcEEEEEEecCCHHHHHHHHHHH--HHcCCCEEEEeceeEEEEECCCccceEEEEECCcC------cEEEeCC
Confidence 34544 788899999999999999999999 7899999999999999987775 679999987786 5677644
Q ss_pred CCCccEEEEcccccHHHHHHHHHhCCCc----cccCCCCCCccccccccccccCCCCCcCCCccccEEEEEEEecCCeEE
Q 044784 99 RSSGFYADVGGEQLWIDVLNATLTRGLS----PVSWTDYLYPTVGGTLSNAGISGHTYQKGPQITNVLELDVLTGKGEFV 174 (482)
Q Consensus 99 ~~~~~~~~v~aG~~~~~l~~~l~~~g~~----~~~~~~~~~~tvGG~~~~~g~g~~~~~~G~~~d~v~~~~vv~~~G~~~ 174 (482)
.++|+||+.|.+|..++.++|+. +.++|+ ||||++.+|+ |.+. +.+.|.|.++++++.+|+++
T Consensus 95 -----~v~a~AG~~~~~l~~~~~~~gl~GlE~l~gIPG----TVGGAv~mNA-GayG---~ei~d~l~sV~~~d~~g~~~ 161 (302)
T PRK14650 95 -----QIVAECGTNFEDLCKFALQNELSGLEFIYGLPG----TLGGAIWMNA-RCFG---NEISEILDKITFIDEKGKTI 161 (302)
T ss_pred -----EEEEEeCCcHHHHHHHHHHcCCchhhhhcCCCc----chhHHHHhhC-Cccc---cchheeEEEEEEEECCCCEE
Confidence 69999999999999999999998 777776 9999999763 2222 35899999999999999999
Q ss_pred EecCCCCchhHHhHhcCC--CCcEEEEEEEEEEeecCC
Q 044784 175 TCSPQKDSELFYAVLGGL--GQFGIITRARIVLGPAKK 210 (482)
Q Consensus 175 ~~~~~~~~dl~~~~~g~~--g~~Giit~~~~~~~~~~~ 210 (482)
+.+. .|+-+++|.|. ..-.||++++|++.|.++
T Consensus 162 ~~~~---~e~~f~YR~S~f~~~~~iIl~a~f~L~~~~~ 196 (302)
T PRK14650 162 CKKF---KKEEFKYKISPFQNKNTFILKATLNLKKGNK 196 (302)
T ss_pred EEEH---HHcCcccccccCCCCCEEEEEEEEEEcCCCH
Confidence 8876 58889999875 223699999999988654
No 29
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.73 E-value=4.4e-17 Score=152.96 Aligned_cols=165 Identities=18% Similarity=0.242 Sum_probs=142.8
Q ss_pred hcCCcCCCCccEEEECCCHHHHHHHHHHHHhccCCCeEEEEcCCCCCCCCccCCCcEEEEcCCCcCcCCCceEEEcCCCC
Q 044784 21 DYGHIIKEKPFAVLYPTSVDDIRTLIYLSYNSLFSYTIAAKGQAHSTWGQAQANDGVVVQMNSLNRFRNGTGILISGDRS 100 (482)
Q Consensus 21 ~~~~~~~~~p~~vv~p~~~~ev~~~v~~a~~~~~~~~~~~~g~g~~~~~~~~~~~~vvidl~~~~~~~~~~~i~~~~~~~ 100 (482)
+|.+ +.+.+..++.|.+.+|+.++++++ ++.++|+.+.|+|+|+...+...++++|.+.+++ .++++.++
T Consensus 13 ttfr-iGg~A~~~~~~~~~e~l~~~~~~~--~~~~~p~~ilG~GSNlLv~d~g~~gvvi~~~~~~------~~~~~~~~- 82 (291)
T COG0812 13 TTFR-IGGPAEVLVEPRDIEELKAALKYA--KAEDLPVLILGGGSNLLVRDGGIGGVVIKLGKLN------FIEIEGDD- 82 (291)
T ss_pred eeEe-cCcceeEEEecCCHHHHHHHHHhh--hhcCCCEEEEecCceEEEecCCCceEEEEccccc------ceeeeccC-
Confidence 5555 788899999999999999999999 7899999999999999877777789999999986 56777773
Q ss_pred CccEEEEcccccHHHHHHHHHhCCCc----cccCCCCCCccccccccccccCCCCCcCCCccccEEEEEEEecCCeEEEe
Q 044784 101 SGFYADVGGEQLWIDVLNATLTRGLS----PVSWTDYLYPTVGGTLSNAGISGHTYQKGPQITNVLELDVLTGKGEFVTC 176 (482)
Q Consensus 101 ~~~~~~v~aG~~~~~l~~~l~~~g~~----~~~~~~~~~~tvGG~~~~~g~g~~~~~~G~~~d~v~~~~vv~~~G~~~~~ 176 (482)
.+++|++|+.|.+|.+++.++|+. +..+|+ ||||++.+|+ |.+. +-+.|.+.++++++.+|++.+.
T Consensus 83 --~~i~a~aG~~~~~l~~~~~~~gl~GlE~l~gIPG----svGgav~mNa-GAyG---~Ei~d~~~~v~~ld~~G~~~~l 152 (291)
T COG0812 83 --GLIEAGAGAPWHDLVRFALENGLSGLEFLAGIPG----SVGGAVIMNA-GAYG---VEISDVLVSVEVLDRDGEVRWL 152 (291)
T ss_pred --CeEEEccCCcHHHHHHHHHHcCCcchhhhcCCCc----ccchhhhccC-cccc---cchheeEEEEEEEcCCCCEEEE
Confidence 499999999999999999999997 677776 9999999763 3322 3489999999999999999999
Q ss_pred cCCCCchhHHhHhcCC--CCcEEEEEEEEEEeec
Q 044784 177 SPQKDSELFYAVLGGL--GQFGIITRARIVLGPA 208 (482)
Q Consensus 177 ~~~~~~dl~~~~~g~~--g~~Giit~~~~~~~~~ 208 (482)
++ .|+-+++|-|. ..-.||++++|++.|.
T Consensus 153 ~~---~el~f~YR~S~f~~~~~vvl~v~f~L~~~ 183 (291)
T COG0812 153 SA---EELGFGYRTSPFKKEYLVVLSVEFKLTKG 183 (291)
T ss_pred EH---HHhCcccccCcCCCCCEEEEEEEEEeCCC
Confidence 87 59999999885 2238999999999987
No 30
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.72 E-value=8.1e-17 Score=156.22 Aligned_cols=165 Identities=18% Similarity=0.169 Sum_probs=136.7
Q ss_pred hcCCcCCCCccEEEECCCHHHHHHHHHHHHhccCCCeEEEEcCCCCCCCCccCCCcEEEEcCCCcCcCCCceEEEc-CCC
Q 044784 21 DYGHIIKEKPFAVLYPTSVDDIRTLIYLSYNSLFSYTIAAKGQAHSTWGQAQANDGVVVQMNSLNRFRNGTGILIS-GDR 99 (482)
Q Consensus 21 ~~~~~~~~~p~~vv~p~~~~ev~~~v~~a~~~~~~~~~~~~g~g~~~~~~~~~~~~vvidl~~~~~~~~~~~i~~~-~~~ 99 (482)
++.+ +.+.+..++.|.|++|+++++++| +++++|+++.|+|+|+...+ ..+|+||.+ +++ .++++ .++
T Consensus 13 tt~r-iGG~A~~~~~p~~~~el~~~~~~~--~~~~~p~~vlG~GSNlLv~D-~~~g~vI~~-~~~------~~~~~~~~~ 81 (334)
T PRK00046 13 NTFG-IDARARHLVEAESEEQLLEALADA--RAAGLPVLVLGGGSNVLFTE-DFDGTVLLN-RIK------GIEVLSEDD 81 (334)
T ss_pred ceec-cCcEEeEEEeeCCHHHHHHHHHHH--HHcCCCEEEEeceEEEEECC-CCCEEEEEe-cCC------ceEEEecCC
Confidence 4444 788899999999999999999999 79999999999999999777 567999998 476 56663 121
Q ss_pred CCccEEEEcccccHHHHHHHHHhCCCc----cccCCCCCCccccccccccccCCCCCcCCCccccEEEEEEEecC-CeEE
Q 044784 100 SSGFYADVGGEQLWIDVLNATLTRGLS----PVSWTDYLYPTVGGTLSNAGISGHTYQKGPQITNVLELDVLTGK-GEFV 174 (482)
Q Consensus 100 ~~~~~~~v~aG~~~~~l~~~l~~~g~~----~~~~~~~~~~tvGG~~~~~g~g~~~~~~G~~~d~v~~~~vv~~~-G~~~ 174 (482)
....++|+||+.|.+|.+++.++|++ +.++|+ ||||++.+|+ |.+. +.+.|.|.++++++.+ |+++
T Consensus 82 -~~~~v~a~AG~~~~~l~~~~~~~gl~GlE~l~gIPG----TVGGAv~mNa-GayG---~ei~d~l~~V~v~d~~~g~~~ 152 (334)
T PRK00046 82 -DAWYLHVGAGENWHDLVLWTLQQGMPGLENLALIPG----TVGAAPIQNI-GAYG---VELKDVCDYVEALDLATGEFV 152 (334)
T ss_pred -CeEEEEEEcCCcHHHHHHHHHHcCchhhHHhcCCCc----chhHHHHhcC-CcCc---ccHheeEEEEEEEECCCCcEE
Confidence 02379999999999999999999998 777777 9999999663 2222 4589999999999987 9999
Q ss_pred EecCCCCchhHHhHhcCC--CC---cEEEEEEEEEEeec
Q 044784 175 TCSPQKDSELFYAVLGGL--GQ---FGIITRARIVLGPA 208 (482)
Q Consensus 175 ~~~~~~~~dl~~~~~g~~--g~---~Giit~~~~~~~~~ 208 (482)
+.++ .|+.+++|-|. .. --||++++|++.|.
T Consensus 153 ~~~~---~e~~f~YR~S~f~~~~~~~~iVl~a~f~L~~~ 188 (334)
T PRK00046 153 RLSA---AECRFGYRDSIFKHEYPDRYAITAVGFRLPKQ 188 (334)
T ss_pred EEEH---HHcCcccccccCCCCCcCCEEEEEEEEEecCC
Confidence 9887 59999999874 22 35999999999986
No 31
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.67 E-value=4.1e-16 Score=150.92 Aligned_cols=166 Identities=13% Similarity=0.084 Sum_probs=134.2
Q ss_pred hcCCcCCCCccEEEECCCHHHHHHHHHHHHhccCCCeEEEEcCCCCCCCCccCCCcEEEEcCCCcCcCCCceEEEc---C
Q 044784 21 DYGHIIKEKPFAVLYPTSVDDIRTLIYLSYNSLFSYTIAAKGQAHSTWGQAQANDGVVVQMNSLNRFRNGTGILIS---G 97 (482)
Q Consensus 21 ~~~~~~~~~p~~vv~p~~~~ev~~~v~~a~~~~~~~~~~~~g~g~~~~~~~~~~~~vvidl~~~~~~~~~~~i~~~---~ 97 (482)
++.+ +.+.+..++.|.|.+|++++++++ +.+++|+++.|+|+|+...+.+.+|+||.+.+|+ .+++. .
T Consensus 22 tT~r-IGG~A~~~~~p~s~~el~~~l~~~--~~~~~p~~iLG~GSNlL~~D~g~~G~VI~l~~~~------~i~i~~~~~ 92 (354)
T PRK14648 22 CSFR-IGGAAQFWAEPRSCTQLRALIEEA--QRARIPLSLIGGGSNVLIADEGVPGLMLSLRRFR------SLHTQTQRD 92 (354)
T ss_pred ceee-eCcEEEEEEeeCCHHHHHHHHHHH--HHcCCCEEEEeceeEEEEeCCCccEEEEEeCCcC------ceEEeeccC
Confidence 4444 788899999999999999999999 7899999999999999988877789999997786 45542 2
Q ss_pred CCCCccEEEEcccccHHHHHHHHHhCCCc----cccCCCCCCccccccccccccCCCCCcCC-CccccEEEEEEE-----
Q 044784 98 DRSSGFYADVGGEQLWIDVLNATLTRGLS----PVSWTDYLYPTVGGTLSNAGISGHTYQKG-PQITNVLELDVL----- 167 (482)
Q Consensus 98 ~~~~~~~~~v~aG~~~~~l~~~l~~~g~~----~~~~~~~~~~tvGG~~~~~g~g~~~~~~G-~~~d~v~~~~vv----- 167 (482)
+ ...++|+||+.|.+|..++.++|+. +.++|+ ||||++.+|+ | .|| .+.|.|.+++++
T Consensus 93 ~---~~~v~agAG~~~~~Lv~~~~~~gl~GlE~laGIPG----TVGGAv~mNA-G----AyG~ei~d~l~~V~v~d~~~~ 160 (354)
T PRK14648 93 G---SVLVHAGAGLPVAALLAFCAHHALRGLETFAGLPG----SVGGAAYMNA-R----CYGRAIADCFHSARTLVLHPV 160 (354)
T ss_pred C---cEEEEEEeCCcHHHHHHHHHHcCCcchhhhcCCCc----chhhHhhhcC-C----ccceEhhheEEEEEEEeccCc
Confidence 2 1479999999999999999999998 677776 9999999763 2 344 488999999999
Q ss_pred ---------------ecCCeE-------------EEecCCCCchhHHhHhcCC--CC--------cEEEEEEEEEEeecC
Q 044784 168 ---------------TGKGEF-------------VTCSPQKDSELFYAVLGGL--GQ--------FGIITRARIVLGPAK 209 (482)
Q Consensus 168 ---------------~~~G~~-------------~~~~~~~~~dl~~~~~g~~--g~--------~Giit~~~~~~~~~~ 209 (482)
+.+|++ .+..+ .|+.|++|-|. .. --||++++|++.|..
T Consensus 161 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~---~e~~f~YR~S~f~~~~~~~~~~~~~iIl~v~f~L~~~~ 237 (354)
T PRK14648 161 RSRAKELPEVRKNAQDKRGECLGLDGGPFTCSSFQTVFA---RAGDWGYKRSPFQSPHGVELHAGRRLILSLCVRLTPGN 237 (354)
T ss_pred ccccccccccccccccCCCceecccccccccccceEecH---HHcCccCCcccCCCCccccccCCCEEEEEEEEEEcCCC
Confidence 456776 34443 58889998874 21 249999999999864
Q ss_pred C
Q 044784 210 K 210 (482)
Q Consensus 210 ~ 210 (482)
+
T Consensus 238 ~ 238 (354)
T PRK14648 238 P 238 (354)
T ss_pred H
Confidence 3
No 32
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.50 E-value=2e-13 Score=128.77 Aligned_cols=151 Identities=16% Similarity=0.130 Sum_probs=122.9
Q ss_pred hcCCcCCCCccEEEECCCHHHHHHHHHHHHhccCCCeEEEEcCCCCCCCCccCCCcEEEEcCC-CcCcCCCceEEEcCCC
Q 044784 21 DYGHIIKEKPFAVLYPTSVDDIRTLIYLSYNSLFSYTIAAKGQAHSTWGQAQANDGVVVQMNS-LNRFRNGTGILISGDR 99 (482)
Q Consensus 21 ~~~~~~~~~p~~vv~p~~~~ev~~~v~~a~~~~~~~~~~~~g~g~~~~~~~~~~~~vvidl~~-~~~~~~~~~i~~~~~~ 99 (482)
++.+ +.+.+..++ |.+.+|+++++ ++|+.+.|+|+|+...+...+|+||.+.+ ++ .++ .+
T Consensus 13 tt~r-iGG~A~~~~-p~~~~~l~~~~--------~~p~~vlG~GSNlL~~D~g~~g~vI~l~~~~~------~~~--~~- 73 (273)
T PRK14651 13 TTLG-VGGPAELWT-VETHEQLAEAT--------EAPYRVLGGGSNLLVSDAGVPERVIRLGGEFA------EWD--LD- 73 (273)
T ss_pred cEee-cCceEEEEe-cCCHHHHHHHH--------CCCeEEEeceeEEEEcCCCcceEEEEECCcce------eEe--EC-
Confidence 4444 677788888 99999999876 27999999999999877766799999866 43 333 23
Q ss_pred CCccEEEEcccccHHHHHHHHHhCCCc----cccCCCCCCccccccccccccCCCCCcCC-CccccEEEEEEEecCCeEE
Q 044784 100 SSGFYADVGGEQLWIDVLNATLTRGLS----PVSWTDYLYPTVGGTLSNAGISGHTYQKG-PQITNVLELDVLTGKGEFV 174 (482)
Q Consensus 100 ~~~~~~~v~aG~~~~~l~~~l~~~g~~----~~~~~~~~~~tvGG~~~~~g~g~~~~~~G-~~~d~v~~~~vv~~~G~~~ 174 (482)
. +|+||+.|.+|.+++.++|+. +.++|+ ||||++.+|+ |. || .+.|.|.++++++ +|+++
T Consensus 74 ---~--~a~AG~~~~~l~~~~~~~gl~GlE~l~gIPG----TVGGAv~mNa-Ga----yG~ei~d~l~~V~~~~-~g~~~ 138 (273)
T PRK14651 74 ---G--WVGGGVPLPGLVRRAARLGLSGLEGLVGIPA----QVGGAVKMNA-GT----RFGEMADALHTVEIVH-DGGFH 138 (273)
T ss_pred ---C--EEECCCcHHHHHHHHHHCCCcchhhhcCCCc----chhhHHHhhC-Cc----cccChheeEEEEEEEE-CCCEE
Confidence 2 699999999999999999997 777776 9999999763 22 34 5899999999998 89999
Q ss_pred EecCCCCchhHHhHhcCC-CCcEEEEEEEEEEeec
Q 044784 175 TCSPQKDSELFYAVLGGL-GQFGIITRARIVLGPA 208 (482)
Q Consensus 175 ~~~~~~~~dl~~~~~g~~-g~~Giit~~~~~~~~~ 208 (482)
+.++ .|+.+.+|.|. ..--||++++|++.|.
T Consensus 139 ~~~~---~e~~f~YR~S~~~~~~iIl~a~f~l~~~ 170 (273)
T PRK14651 139 QYSP---DELGFGYRHSGLPPGHVVTRVRLKLRPS 170 (273)
T ss_pred EEEH---HHccccccccCCCCCEEEEEEEEEECCC
Confidence 9887 58999999874 2235999999999886
No 33
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. The region around the histidine that binds the FAD group is conserved in these enzymes (see IPR006093 from INTERPRO).; GO: 0003824 catalytic activity, 0050660 flavin adenine dinucleotide binding; PDB: 1WVE_B 1DII_B 1WVF_A 1DIQ_A 2UUU_B 2UUV_A 1W1M_A 1E8H_B 1E0Y_B 1DZN_B ....
Probab=99.36 E-value=1.2e-13 Score=131.33 Aligned_cols=230 Identities=14% Similarity=0.214 Sum_probs=129.5
Q ss_pred CCceEEEEEEeCChhhHHHHHHHHHhcCCCCCCCCCCcccceEeecCCCCCcCCcccchhhhccccccceEEEEEEEEEe
Q 044784 209 KKRVKWLRILYSDFSSFSTDQETLISTTGPSDKVMPDFLEGHLLMNQSPLDFYPQSQRRKITFLVNQYGILYIIEVVTYY 288 (482)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (482)
|+......+.|++++++.+.+..++.. +..|. ++|++|...+... ...... ..+......++++ +.
T Consensus 2 Pe~~~~~~~~f~~~~~a~~~~~~i~~~-g~~p~-a~el~d~~~~~~~--~~~~~~-------~~~~~~~~~llv~---~~ 67 (248)
T PF02913_consen 2 PEARATALVFFPSFEDAADAVRAIMQS-GIIPS-AIELLDSAALKLA--LEHWGE-------PLPPEGGAVLLVE---FE 67 (248)
T ss_dssp -SEEEEEEEEESCHHHHHHHHCCCCHH-CSSCC-ECCCCHHHHHHHH--HHSEEE-------TSSTTTSEEEEEE---CC
T ss_pred CcceEEEEEEcCCHHHHHHHHHHHHHc-CCCce-EEeeeCHHHHHHH--HhhcCC-------CccCCcccEEEEE---EC
Confidence 566677788999999999999888887 77777 8899987644211 000000 1122234444443 44
Q ss_pred CCCcc--hHHHH-HHHhccccCCCCccccccchHHHHhhhhhHHHHHHHHcc-----CCCCCc--cccccccccchhhhh
Q 044784 289 DNKNE--AKKVK-QMLKSLKGFLPGFVFEKDVTYLQFLNRVHDQEIELRKKG-----LWDIPH--PWLNIFIPKSRITDF 358 (482)
Q Consensus 289 ~~~~~--~~~~~-~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~w~~r~--~~~~~~vp~~~~~~~ 358 (482)
+.+.+ ....+ .+.+-+............ .-.. ....+........ ...... ...++.+|.++++++
T Consensus 68 g~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~-~~~~---~~~~W~~R~~~~~~~~~~~~~~~~~~~~~dv~vp~~~l~~~ 143 (248)
T PF02913_consen 68 GSDEEAVEEQLEAEIEEICKKYGGEDVVIAD-DEEE---QERLWAIRRAIMPYLRDAAGRAGPVWDTEDVAVPPSRLPEF 143 (248)
T ss_dssp CHHHCCHHHHHHHHHHHHHCTCTCCEEEEEH-CHHC---TSTHHHHHHHHCCGGGCSHCTTEEEEEEEEEESCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHhhcCCceeEEeC-CHHH---HHhhhhhhhhhcccccccccccCCceeeeeecccchhhhhH
Confidence 44311 12222 233333322211100000 0000 0011110001111 001000 034688999999999
Q ss_pred hHHHHHHHhhccCCCCceEEEEEccCCCCCcCcceeecc-CCceEEEEEeeCCCcchHHHHHHhhHHHHHHHHHcCccce
Q 044784 359 DNGVFRNILLKRNFTSSTVLVYPLLRSKWDERMSAVIAA-EEEVFYFVGFLDASADNWEAFDNKNKDILQFCVNAGIKFK 437 (482)
Q Consensus 359 ~~~~~~~l~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~ 437 (482)
++.+ +.+.+. .+.....++|. ++++|+++.+....++.++.+.+..+++.+.+.+.|+.
T Consensus 144 ~~~~-~~~~~~-----------------~~~~~~~~gH~~~g~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~-- 203 (248)
T PF02913_consen 144 LREI-RALLRE-----------------YGLEVCHFGHAGDGNLHLYILFDPRDPEEPERAEALWDELYELVLELGGS-- 203 (248)
T ss_dssp HHHH-HHHHHH-----------------CTEEEEEEEEEEECEEEEEEEEETTSHHHHHHHHHHHHHHHHHHHHTT-B--
T ss_pred HHhh-hhhhhh-----------------ccccccceEEccCCeEEEEeecccchHHHHHHHHHHHHHHHHHHHhcccc--
Confidence 9976 666652 22234567787 89999999887766667777778888888888887655
Q ss_pred ecCCCCCC----hhhH-HHhhcc-chhHHHHhhhcCCCCCCCCCCCc
Q 044784 438 QYLGHHAT----KEEW-IIHFGS-KWNTFQQRKTRFDPRMILSPGQR 478 (482)
Q Consensus 438 ~y~~~~~~----~~~~-~~~yG~-~~~~L~~iK~~~DP~nifnpgk~ 478 (482)
+...++ ...| ...+|+ .++.|++||+.|||+|||||||+
T Consensus 204 --is~eHG~G~~k~~~~~~~~~~~~~~~~~~iK~~~DP~~ilNPGki 248 (248)
T PF02913_consen 204 --ISAEHGIGKLKKPYLEEEYGPAALRLMRAIKQAFDPNGILNPGKI 248 (248)
T ss_dssp --BSSSSGGGHHHHHHHCHHCHHHHHHHHHHHHHHH-TTS-BSTTG-
T ss_pred --cccccchhhhhHHHHHHhcchHHHHHHHHhhhccCCccCCCCCCC
Confidence 222222 3344 566775 79999999999999999999985
No 34
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.27 E-value=2.5e-11 Score=113.49 Aligned_cols=148 Identities=14% Similarity=0.076 Sum_probs=115.0
Q ss_pred hhcCCcCCCCccEEEECCCHHHHHHHHHHHHhccCCCeEEEEcCCCCCCCCccCCCcEEEEcCCCcCcCCCceEEEcCCC
Q 044784 20 IDYGHIIKEKPFAVLYPTSVDDIRTLIYLSYNSLFSYTIAAKGQAHSTWGQAQANDGVVVQMNSLNRFRNGTGILISGDR 99 (482)
Q Consensus 20 ~~~~~~~~~~p~~vv~p~~~~ev~~~v~~a~~~~~~~~~~~~g~g~~~~~~~~~~~~vvidl~~~~~~~~~~~i~~~~~~ 99 (482)
..|.+ +.+.+..++.|.+.+ + ++|+.+.|+|+|+...+...++++ -+.+++ .++++.+
T Consensus 10 ~tt~~-iGG~A~~~~~~~~~~-l------------~~p~~vlG~GSNlLv~D~g~~~vv-~~~~~~------~~~~~~~- 67 (257)
T PRK13904 10 YSSVK-IGPPLEVLVLEEIDD-F------------SQDGQIIGGANNLLISPNPKNLAI-LGKNFD------YIKIDGE- 67 (257)
T ss_pred cCcee-ECceEEEEEEechhh-h------------CCCeEEEeceeEEEEecCCccEEE-EccCcC------eEEEeCC-
Confidence 35545 788889999988887 5 479999999999997776644444 345676 5677554
Q ss_pred CCccEEEEcccccHHHHHHHHHhCCCc----cccCCCCCCccccccccccccCCCCCcCCCccccEEEEEEEecCCeEEE
Q 044784 100 SSGFYADVGGEQLWIDVLNATLTRGLS----PVSWTDYLYPTVGGTLSNAGISGHTYQKGPQITNVLELDVLTGKGEFVT 175 (482)
Q Consensus 100 ~~~~~~~v~aG~~~~~l~~~l~~~g~~----~~~~~~~~~~tvGG~~~~~g~g~~~~~~G~~~d~v~~~~vv~~~G~~~~ 175 (482)
+++|+||+.|.+|.+++.++|+. +.++|+ ||||++.+|+ |.+. +.+.|.|.++++++ | +
T Consensus 68 ----~v~~~AG~~l~~l~~~~~~~gl~GlE~l~gIPG----tVGGAv~mNa-Ga~g---~ei~d~l~~V~~~~--~---~ 130 (257)
T PRK13904 68 ----CLEIGGATKSGKIFNYAKKNNLGGFEFLGKLPG----TLGGLVKMNA-GLKE---YEISNNLESICTNG--G---W 130 (257)
T ss_pred ----EEEEEcCCcHHHHHHHHHHCCCchhhhhcCCCc----cHHHHHHhcC-CcCc---cchheeEEEEEEEe--e---E
Confidence 69999999999999999999998 677776 9999999763 2222 34889999999998 4 3
Q ss_pred ecCCCCchhHHhHhcCCCCcEEEEEEEEEEeecCC
Q 044784 176 CSPQKDSELFYAVLGGLGQFGIITRARIVLGPAKK 210 (482)
Q Consensus 176 ~~~~~~~dl~~~~~g~~g~~Giit~~~~~~~~~~~ 210 (482)
.++ .|+.+.+|.|.=. .||++++|++.|..+
T Consensus 131 ~~~---~e~~f~YR~S~~~-~iIl~a~f~l~~~~~ 161 (257)
T PRK13904 131 IEK---EDIGFGYRSSGIN-GVILEARFKKTHGFD 161 (257)
T ss_pred EeH---HHCcccccCcCCC-cEEEEEEEEECCCCH
Confidence 333 5889999987422 499999999998654
No 35
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyse the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine [].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 2IPI_A 2Y3S_A 2Y3R_D 2Y08_B 2Y4G_A 3D2H_A 3FW9_A 3FW8_A 3FWA_A 3D2J_A ....
Probab=99.07 E-value=3.6e-11 Score=81.97 Aligned_cols=33 Identities=21% Similarity=0.543 Sum_probs=27.2
Q ss_pred hH-HHhhccchhHHHHhhhcCCCCCCCCCCCcCC
Q 044784 448 EW-IIHFGSKWNTFQQRKTRFDPRMILSPGQRIF 480 (482)
Q Consensus 448 ~~-~~~yG~~~~~L~~iK~~~DP~nifnpgk~i~ 480 (482)
+| +.+||++++||++||++|||+|+|+..|+|+
T Consensus 14 ~~~~~yyg~n~~rL~~iK~~yDP~n~F~~~q~I~ 47 (47)
T PF08031_consen 14 DWQEAYYGENYDRLRAIKRKYDPDNVFRFPQSIP 47 (47)
T ss_dssp HHHHHHHGGGHHHHHHHHHHH-TT-TS-STTS--
T ss_pred HHHHHHhchhHHHHHHHHHHhCccceeCCCCCcC
Confidence 77 9999999999999999999999999999986
No 36
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=96.90 E-value=0.0063 Score=62.98 Aligned_cols=150 Identities=16% Similarity=0.105 Sum_probs=91.8
Q ss_pred CccEEEECCCHHHHHHHHHHHHhccCCCeEEEEcCCCCCCCCc---cCCCcEEEEcCCCcCcCCCceEEEcCCCCCccEE
Q 044784 29 KPFAVLYPTSVDDIRTLIYLSYNSLFSYTIAAKGQAHSTWGQA---QANDGVVVQMNSLNRFRNGTGILISGDRSSGFYA 105 (482)
Q Consensus 29 ~p~~vv~p~~~~ev~~~v~~a~~~~~~~~~~~~g~g~~~~~~~---~~~~~vvidl~~~~~~~~~~~i~~~~~~~~~~~~ 105 (482)
....+++|+|.+|+.++++.- . ..++.+|||.+.... ......+||++++..+ +.|+.+.+ .+
T Consensus 191 ~~~~~~~P~sl~Ea~~ll~~~-----~-~a~lvAGGTdl~~~~~~~~~~~~~lIdl~~I~EL---~~I~~~~~-----~l 256 (467)
T TIGR02963 191 GGERFIAPTTLDDLAALKAAH-----P-DARIVAGSTDVGLWVTKQMRDLPDVIYVGQVAEL---KRIEETDD-----GI 256 (467)
T ss_pred CCceEECCCCHHHHHHHHhhC-----C-CCEEEecCcchHHHHhcCCCCCCeEEECCCChhh---ccEEEcCC-----EE
Confidence 345689999999999987732 1 357799999984221 1234689999986432 24665543 79
Q ss_pred EEcccccHHHHHHHHHhC--CCc-----cccCCCCCCccccccccccccCCCCCcCCCccccE-----E--EEEEEecCC
Q 044784 106 DVGGEQLWIDVLNATLTR--GLS-----PVSWTDYLYPTVGGTLSNAGISGHTYQKGPQITNV-----L--ELDVLTGKG 171 (482)
Q Consensus 106 ~v~aG~~~~~l~~~l~~~--g~~-----~~~~~~~~~~tvGG~~~~~g~g~~~~~~G~~~d~v-----~--~~~vv~~~G 171 (482)
+++|++++.++.+.+.++ .+. ..+..--+..||||++.++. + .+|.. + .+++..++|
T Consensus 257 ~IGA~vT~~el~~~l~~~~p~L~~a~~~ias~qIRN~aTiGGNI~~as--P-------~sD~~p~LlALdA~v~l~~~~G 327 (467)
T TIGR02963 257 EIGAAVTLTDAYAALAKRYPELGELLRRFASLQIRNAGTLGGNIANGS--P-------IGDSPPALIALGARLTLRKGEG 327 (467)
T ss_pred EEecCCcHHHHHHHHHHHhHHHHHHHHHhCCHHHcCceecccccccCC--C-------chHHHHHHHHcCCEEEEEcCCC
Confidence 999999999998766543 111 22222345679999999753 2 23432 1 345555666
Q ss_pred eEEEecCCCCchhHHhHhc-CCCCcEEEEEEEEEE
Q 044784 172 EFVTCSPQKDSELFYAVLG-GLGQFGIITRARIVL 205 (482)
Q Consensus 172 ~~~~~~~~~~~dl~~~~~g-~~g~~Giit~~~~~~ 205 (482)
+. +..- .|+|...+- ....--||+++.+..
T Consensus 328 ~R-~vpl---~dF~~g~~kt~L~~~EiI~~I~iP~ 358 (467)
T TIGR02963 328 RR-TLPL---EDFFIDYGKTDRQPGEFVEALHVPR 358 (467)
T ss_pred cE-EEeH---HHhhcccccccCCCCceEEEEEecC
Confidence 32 1211 355543322 112334999998864
No 37
>PRK09799 putative oxidoreductase; Provisional
Probab=96.80 E-value=0.0035 Score=59.69 Aligned_cols=100 Identities=13% Similarity=0.107 Sum_probs=67.0
Q ss_pred EEEECCCHHHHHHHHHHHHhccCCCeEEEEcCCCCCCCC-ccCCCcEEEEcCCCcCcCCCceEEEcCCCCCccEEEEccc
Q 044784 32 AVLYPTSVDDIRTLIYLSYNSLFSYTIAAKGQAHSTWGQ-AQANDGVVVQMNSLNRFRNGTGILISGDRSSGFYADVGGE 110 (482)
Q Consensus 32 ~vv~p~~~~ev~~~v~~a~~~~~~~~~~~~g~g~~~~~~-~~~~~~vvidl~~~~~~~~~~~i~~~~~~~~~~~~~v~aG 110 (482)
.++.|+|.+|+.++++. ++-..++.+|||.+... ......++||++++ .+ +.|+.+. ..++++|+
T Consensus 4 ~y~~P~sl~Ea~~ll~~-----~~~~a~ilAGGT~L~~~~~~~~~~~lIdi~~i-eL---~~I~~~~-----~~l~IGA~ 69 (258)
T PRK09799 4 QFFRPDSVEQALELKRR-----YQDEAVWFAGGSKLNATPTRTDKKIAISLQDL-EL---DWIEWDN-----GALRIGAM 69 (258)
T ss_pred cEeCCCCHHHHHHHHHh-----CCCCCEEEecCCChHhhhCCCCCCEEEEcCCC-CC---CeEEecC-----CEEEEccC
Confidence 47899999999998763 22235779999998522 12235789999975 32 3566544 47999999
Q ss_pred ccHHHHHHHHHhC-CCc-----cccCCCCCCcccccccccc
Q 044784 111 QLWIDVLNATLTR-GLS-----PVSWTDYLYPTVGGTLSNA 145 (482)
Q Consensus 111 ~~~~~l~~~l~~~-g~~-----~~~~~~~~~~tvGG~~~~~ 145 (482)
+++.++.+...-. .+. ..+.+--+..|+||++.++
T Consensus 70 vT~~~l~~~~~~~~~L~~a~~~vas~qIRN~aTiGGNl~~a 110 (258)
T PRK09799 70 SRLQPLRDARFIPAALREALGFVYSRHLRNQSTIGGEIAAR 110 (258)
T ss_pred CcHHHHHhCcccHHHHHHHHHHhCCHHHhccchhHHHhhcC
Confidence 9999998754211 111 2223334557999999975
No 38
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain. They include aldehyde oxidase (1.2.3.1 from EC), that converts an aldehyde and water to an acid and hydrogen peroxide, and xanthine dehydrogenase (1.1.1.204 from EC), that converts xanthine to urate. These enzymes require molybdopterin and FAD as cofactors and have and two 2FE-2S clusters. Another enzyme that contains this domain is the Pseudomonas thermocarboxydovorans carbon monoxide oxygenase.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2E1Q_C 2CKJ_A 3EUB_K 3NS1_K 3NVV_B 1FO4_B 3AM9_A 3AX7_B 3BDJ_A 3ETR_B ....
Probab=96.65 E-value=0.0027 Score=56.57 Aligned_cols=102 Identities=17% Similarity=0.164 Sum_probs=64.4
Q ss_pred ccEEEECCCHHHHHHHHHHHHhccCCCeEEEEcCCCCCCCCcc---CCCcEEEEcCCCcCcCCCceEEEcCCCCCccEEE
Q 044784 30 PFAVLYPTSVDDIRTLIYLSYNSLFSYTIAAKGQAHSTWGQAQ---ANDGVVVQMNSLNRFRNGTGILISGDRSSGFYAD 106 (482)
Q Consensus 30 p~~vv~p~~~~ev~~~v~~a~~~~~~~~~~~~g~g~~~~~~~~---~~~~vvidl~~~~~~~~~~~i~~~~~~~~~~~~~ 106 (482)
+..+++|.|.+|+.++++.- . ..++.+||+.+...-. .....+||++++..+ +.|+.+. ..++
T Consensus 2 ~~~~~~P~sl~ea~~ll~~~----~--~a~~vaGgT~l~~~~~~~~~~~~~lIdl~~i~eL---~~I~~~~-----~~l~ 67 (171)
T PF00941_consen 2 PFEYFRPKSLEEALELLAKG----P--DARIVAGGTDLGVQMREGILSPDVLIDLSRIPEL---NGISEDD-----GGLR 67 (171)
T ss_dssp S-EEEE-SSHHHHHHHHHHG----T--TEEEESS-TTHHHHHHTTS---SEEEEGTTSGGG---G-EEEET-----SEEE
T ss_pred CeEEEccCCHHHHHHHHhcC----C--CCEEEeCCCccchhcccCccccceEEEeEEeccc---ccEEEec-----cEEE
Confidence 45689999999999998822 2 5688999998752211 134699999986422 3677774 4799
Q ss_pred EcccccHHHHHHHH---------HhCCCccccCCCCCCcccccccccc
Q 044784 107 VGGEQLWIDVLNAT---------LTRGLSPVSWTDYLYPTVGGTLSNA 145 (482)
Q Consensus 107 v~aG~~~~~l~~~l---------~~~g~~~~~~~~~~~~tvGG~~~~~ 145 (482)
++|++++.++.+.- .++-....+.+--+.+|+||++.++
T Consensus 68 IGA~vtl~~l~~~~~~~~~~p~L~~~~~~ias~~IRn~aTiGGNl~~~ 115 (171)
T PF00941_consen 68 IGAAVTLSELEESPLIQQYFPALAQAARRIASPQIRNRATIGGNLCNA 115 (171)
T ss_dssp EETTSBHHHHHHHHHHHHHHHHHHHHHCTSS-HHHHTT-BHHHHHHHT
T ss_pred ECCCccHHHHhhcchhhhhHHHHHHHHHHhCCHhHeeeeeeccccccC
Confidence 99999999998871 1111112222223456999999865
No 39
>PF04030 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: IPR007173 This domain is specific to D-arabinono-1,4-lactone oxidase 1.1.3.37 from EC, which is involved in the final step of the D-erythroascorbic acid biosynthesis pathway [].; GO: 0003885 D-arabinono-1,4-lactone oxidase activity, 0055114 oxidation-reduction process, 0016020 membrane; PDB: 2VFU_A 2VFV_A 2VFT_A 2VFS_A 2VFR_A.
Probab=96.53 E-value=0.0076 Score=57.60 Aligned_cols=122 Identities=13% Similarity=0.188 Sum_probs=60.2
Q ss_pred cccccccchhhhhhHHHHHHHhhccC--CCCceEEEEEccCCCCCcCcceeeccCCceEEEEEeeCCCcchHHHHHHhhH
Q 044784 346 LNIFIPKSRITDFDNGVFRNILLKRN--FTSSTVLVYPLLRSKWDERMSAVIAAEEEVFYFVGFLDASADNWEAFDNKNK 423 (482)
Q Consensus 346 ~~~~vp~~~~~~~~~~~~~~l~~~~~--~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 423 (482)
.+..+|.+...++++++ ..+.+... ....+|.+--.++. +.-.+.... ..++++.+.......... ...+...
T Consensus 128 ~E~~iP~~~~~~~l~~l-~~~~~~~~~~~~~~pie~R~~~~d--~~~Ls~~~~-~~~~~i~~~~~~~~~~~~-~~~~~~~ 202 (259)
T PF04030_consen 128 MEYAIPIENAPEALREL-RALIDKEGGFPVHFPIEVRFVKAD--DAWLSPAYG-RDTCYIEIHMYRPMGDPV-PYEEFFR 202 (259)
T ss_dssp EEEEEEGGGHHHHHHHH-HHTHHHHG--GGEEEEEEEEE--B---STT-TTBT-S-EEEEEEEE-S-HH----HHHHHHH
T ss_pred EEEeeCHHHHHHHHHHH-HHHHHHcccCceeEEEEEEEECCC--hhhcCCCCC-CCEEEEEEEEeCCccccc-cHHHHHH
Confidence 46789999999999887 45544223 11224444444332 111222222 345665555444221111 1233444
Q ss_pred HHHHHHHHcCccceecCCCC--CChhhHHHhhccchhHHHHhhhcCCCCCCCCC
Q 044784 424 DILQFCVNAGIKFKQYLGHH--ATKEEWIIHFGSKWNTFQQRKTRFDPRMILSP 475 (482)
Q Consensus 424 ~l~~~~~~~G~~~~~y~~~~--~~~~~~~~~yG~~~~~L~~iK~~~DP~nifnp 475 (482)
.+.+.+.+.|+ ++|-... ...++.++.| ++++++.++|+++||+|+|.+
T Consensus 203 ~~e~~~~~~gg--RpHWgK~~~~~~~~l~~~Y-p~~~~F~~~r~~~DP~g~F~n 253 (259)
T PF04030_consen 203 AFEQILRKYGG--RPHWGKNHTLTAEQLRKLY-PRLDDFLAVRKKLDPQGVFLN 253 (259)
T ss_dssp HHHHHHGGGT---EE-TTS-----HHHHHHT--TTHHHHHHHHHHH-TT-TT--
T ss_pred HHHHHHHHcCC--EECcCcCCCCCHHHHHHHC-cCHHHHHHHHHHhCCCCCCCC
Confidence 44444455543 4444432 2456667888 799999999999999999975
No 40
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit. This protein is suggested by Bebien, et al., to be the FAD-binding subunit of a molydbopterin-containing selenate reductase. Our comparative genomics suggests it to be a subunit of a selenium-dependent molybdenum hydroxylase for an unknown substrate.
Probab=96.51 E-value=0.0067 Score=57.70 Aligned_cols=99 Identities=12% Similarity=0.035 Sum_probs=64.3
Q ss_pred EEECCCHHHHHHHHHHHHhccCCCeEEEEcCCCCCCC-CccCCCcEEEEcCCCcCcCCCceEEEcCCCCCccEEEEcccc
Q 044784 33 VLYPTSVDDIRTLIYLSYNSLFSYTIAAKGQAHSTWG-QAQANDGVVVQMNSLNRFRNGTGILISGDRSSGFYADVGGEQ 111 (482)
Q Consensus 33 vv~p~~~~ev~~~v~~a~~~~~~~~~~~~g~g~~~~~-~~~~~~~vvidl~~~~~~~~~~~i~~~~~~~~~~~~~v~aG~ 111 (482)
++.|+|.+|..++++. ++-.-++.+|||.+.. .......++||++++ .+ +.|+.+. ..++++|++
T Consensus 4 y~~P~sl~Ea~~ll~~-----~~~~a~~lAGGTdL~~~~~~~~~~~lIdl~~i-eL---~~I~~~~-----~~l~IGA~~ 69 (257)
T TIGR03312 4 FFRPESTIQALELKKR-----HTGVAVWFAGGSKLNATPTRTDKKVAISLDKL-AL---DKIELQG-----GALHIGAMC 69 (257)
T ss_pred eECCCCHHHHHHHHHh-----CCCCCEEEecCcchhhhhcccCCCEEEEcCCC-CC---CcEEecC-----CEEEEEeCC
Confidence 6789999999998763 2212467899999862 222234689999886 33 3566544 379999999
Q ss_pred cHHHHHHH------HHhCCCccccCCCCCCcccccccccc
Q 044784 112 LWIDVLNA------TLTRGLSPVSWTDYLYPTVGGTLSNA 145 (482)
Q Consensus 112 ~~~~l~~~------l~~~g~~~~~~~~~~~~tvGG~~~~~ 145 (482)
|+.+|.+. |.+.=....++.--+..|+||++.++
T Consensus 70 t~~~l~~~~~~~~~L~~aa~~va~~qIRN~gTlGGNl~~a 109 (257)
T TIGR03312 70 HLQSLIDNELTPAALKEALGFVYSRHIRNQATIGGEIAAF 109 (257)
T ss_pred cHHHHHhCcchHHHHHHHHHHhCCHHHhccccHHHHhhcC
Confidence 99998753 11110002222223456999999975
No 41
>PLN00107 FAD-dependent oxidoreductase; Provisional
Probab=95.81 E-value=0.097 Score=48.85 Aligned_cols=133 Identities=18% Similarity=0.209 Sum_probs=68.1
Q ss_pred HccCCCCCcc----c--cccccccchhhhhhHHHHHHHhhccCCC------CceEEEEEccCCCCCcCcceeeccCCceE
Q 044784 335 KKGLWDIPHP----W--LNIFIPKSRITDFDNGVFRNILLKRNFT------SSTVLVYPLLRSKWDERMSAVIAAEEEVF 402 (482)
Q Consensus 335 ~~~~w~~r~~----~--~~~~vp~~~~~~~~~~~~~~l~~~~~~~------~~~i~~~~~~g~~~~~~~~~~~~~~~~~~ 402 (482)
..-.|+.|-. + .+..||.++..++++++ +++.+..+.. ...|.+--.... .+...+.+++++
T Consensus 48 ~~c~wd~r~~~g~~F~E~EyaVP~e~~~~aL~el-r~l~~~~~~~l~~~ev~fPIevR~vaAD-----dawLSp~rDSv~ 121 (257)
T PLN00107 48 TACPWDPRIKHGEFFFQSAISVPLSGAAAFINDI-KALRDIEPDALCGLELNYGVLLRYVRAS-----PAHLGKEEDALD 121 (257)
T ss_pred ccCCCCccccCCcceEEEEEEecHHHHHHHHHHH-HHHHHhCcccccccccccCeEEEEecCc-----chhhCCCCCeEE
Confidence 3455665543 1 14679999999999987 6777633211 112333222111 111222255666
Q ss_pred EEEEeeCCC--cchHHHHHHhhHHHHHH-HHHcCccceecCCC--CCChhhHHHhhccchhHHHHhhhcCCCCCCCCCC
Q 044784 403 YFVGFLDAS--ADNWEAFDNKNKDILQF-CVNAGIKFKQYLGH--HATKEEWIIHFGSKWNTFQQRKTRFDPRMILSPG 476 (482)
Q Consensus 403 ~~i~~~~~~--~~~~~~~~~~~~~l~~~-~~~~G~~~~~y~~~--~~~~~~~~~~yG~~~~~L~~iK~~~DP~nifnpg 476 (482)
+.+.+.... ...-........++-+. .++.|+- ++=.- ....+++...| ++++.++++|+++||+|+|.+.
T Consensus 122 I~~~~yr~~~~~~~pr~~~~~f~eiEqial~kygGR--PHWGK~h~l~~~~l~~lY-Pr~~dFlavR~~lDP~G~F~N~ 197 (257)
T PLN00107 122 FDLTYYRSKDDPAAPRLHEDAMEEIEQMAILKYGAL--PHWGKNRNAAFDGAIAKY-KKAGEFLKVKERLDPEGLFSSE 197 (257)
T ss_pred EEEEEecccCCccccccHHHHHHHHHHHHHHhcCCc--CCchhccCCCHHHHHHHC-cCHHHHHHHHHHhCCCCccCCH
Confidence 655554422 11000112223333323 2343321 11111 12345666666 5899999999999999999864
No 42
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional
Probab=95.65 E-value=0.012 Score=57.18 Aligned_cols=150 Identities=12% Similarity=0.114 Sum_probs=87.7
Q ss_pred EEEECCCHHHHHHHHHHHHhccCCCeEEEEcCCCCCCCC---ccCCCcEEEEcCCCcCcCCCceEEEcCCCCCccEEEEc
Q 044784 32 AVLYPTSVDDIRTLIYLSYNSLFSYTIAAKGQAHSTWGQ---AQANDGVVVQMNSLNRFRNGTGILISGDRSSGFYADVG 108 (482)
Q Consensus 32 ~vv~p~~~~ev~~~v~~a~~~~~~~~~~~~g~g~~~~~~---~~~~~~vvidl~~~~~~~~~~~i~~~~~~~~~~~~~v~ 108 (482)
.++.|+|.+|..++++.- . ..++.+|||.+... .......+||++++..+ +.|+...+ ..++++
T Consensus 6 ~~~~P~sl~Ea~~ll~~~-----~-~a~ivaGGTdl~~~~~~~~~~p~~lIdl~~i~eL---~~I~~~~~----~~l~IG 72 (291)
T PRK09971 6 EYHEAATLEEAIELLADN-----P-QAKLIAGGTDVLIQLHHHNDRYRHLVSIHNIAEL---RGITLAED----GSIRIG 72 (291)
T ss_pred ceeCCCCHHHHHHHHHhC-----C-CCEEEeccchHHHHHhCCCCCCCeEEEcCCChhh---hCeEecCC----CEEEEE
Confidence 588999999999987732 1 35779999988421 11234789999986432 24565444 479999
Q ss_pred ccccHHHHHH--HHHhCC--Cc-----cccCCCCCCccccccccccccCCCCCcCCCccccEE-------EEEEEecCCe
Q 044784 109 GEQLWIDVLN--ATLTRG--LS-----PVSWTDYLYPTVGGTLSNAGISGHTYQKGPQITNVL-------ELDVLTGKGE 172 (482)
Q Consensus 109 aG~~~~~l~~--~l~~~g--~~-----~~~~~~~~~~tvGG~~~~~g~g~~~~~~G~~~d~v~-------~~~vv~~~G~ 172 (482)
|++++.++.+ .+.++- +. ..+..--+..|+||++.++.. .+|.+. .+++..++|+
T Consensus 73 A~vt~~~l~~~~~i~~~~p~L~~a~~~ia~~qIRN~aTiGGNi~~a~p---------~sD~~~~Llal~A~v~i~~~~g~ 143 (291)
T PRK09971 73 AATTFTQIIEDPIIQKHLPALAEAAVSIGGPQIRNVATIGGNICNGAT---------SADSAPPLFALDAKLEIHSPNGV 143 (291)
T ss_pred eCCcHHHHhcChHHHHHhHHHHHHHHHhCCHHHhcceecccccccCCc---------chhHHHHHHHcCCEEEEEcCCCc
Confidence 9999999986 121110 00 222223455799999997531 233321 3445556663
Q ss_pred EEEecCCCCchhHHhHhc-CCCCcEEEEEEEEEEee
Q 044784 173 FVTCSPQKDSELFYAVLG-GLGQFGIITRARIVLGP 207 (482)
Q Consensus 173 ~~~~~~~~~~dl~~~~~g-~~g~~Giit~~~~~~~~ 207 (482)
.+..- .|+|....- ....--+||++.+...+
T Consensus 144 -R~vp~---~df~~g~~~t~l~~~Eil~~I~iP~~~ 175 (291)
T PRK09971 144 -RFVPI---NGFYTGPGKVSLEHDEILVAFIIPPEP 175 (291)
T ss_pred -EEEEH---HHhcCCccccccCCCceEEEEEeCCCC
Confidence 11211 355433211 11222399999887544
No 43
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit. This model represents the second largest chain, beta, of the enzyme 4-hydroxybenzoyl-CoA reductase. In species capable of degrading various aromatic compounds by way of benzoyl-CoA, this enzyme can convert 4-hydroxybenzoyl-CoA to benzoyl-CoA.
Probab=95.01 E-value=0.027 Score=55.11 Aligned_cols=102 Identities=16% Similarity=0.175 Sum_probs=65.1
Q ss_pred ccEEEECCCHHHHHHHHHHHHhccCCCeEEEEcCCCCCCCCc---cCCCcEEEEcCCCcCcCCCceEEEcCCCCCccEEE
Q 044784 30 PFAVLYPTSVDDIRTLIYLSYNSLFSYTIAAKGQAHSTWGQA---QANDGVVVQMNSLNRFRNGTGILISGDRSSGFYAD 106 (482)
Q Consensus 30 p~~vv~p~~~~ev~~~v~~a~~~~~~~~~~~~g~g~~~~~~~---~~~~~vvidl~~~~~~~~~~~i~~~~~~~~~~~~~ 106 (482)
+..++.|+|.+|..++++-. + .-++.+|||.+.... ......+||+.++..+ +.|+.+++ .++
T Consensus 4 ~f~~~~P~sl~eA~~ll~~~-----~-~a~ivaGGTdl~~~~~~~~~~p~~lIdi~~I~eL---~~I~~~~~-----~l~ 69 (321)
T TIGR03195 4 DFRTLRPASLADAVAALAAH-----P-AARPLAGGTDLLPNLRRGLGQPETLVDLTGIDEI---AQLSTLAD-----GLR 69 (321)
T ss_pred CceEECCCCHHHHHHHHhhC-----C-CCEEEEccchHHHHHhcccCCCCeEEECCCChhh---ccEEecCC-----EEE
Confidence 34589999999999987632 1 236799999774211 1134789999976422 25666543 699
Q ss_pred EcccccHHHHHHH--HHhC--CCc-----cccCCCCCCcccccccccc
Q 044784 107 VGGEQLWIDVLNA--TLTR--GLS-----PVSWTDYLYPTVGGTLSNA 145 (482)
Q Consensus 107 v~aG~~~~~l~~~--l~~~--g~~-----~~~~~~~~~~tvGG~~~~~ 145 (482)
++|+||+.+|.+. +.++ .+. ..+..--+..|+||++.+.
T Consensus 70 IGA~vT~~~l~~~~~i~~~~p~L~~a~~~ias~qIRN~aTiGGNi~~~ 117 (321)
T TIGR03195 70 IGAGVTLAALAEDALVRTRWPALAQAARAVAGPTHRAAATLGGNLCLD 117 (321)
T ss_pred EeccCcHHHHhhChhhHhHhHHHHHHHHHhCCHHHhCceecHHhhhcc
Confidence 9999999999652 1110 000 2222233557999999963
No 44
>PLN02906 xanthine dehydrogenase
Probab=94.18 E-value=0.19 Score=58.94 Aligned_cols=102 Identities=12% Similarity=0.010 Sum_probs=68.9
Q ss_pred ccEEEECCCHHHHHHHHHHHHhccCCCeEEEEcCCCCCCCCc---cCCCcEEEEcCCCcCcCCCceEEEcCCCCCccEEE
Q 044784 30 PFAVLYPTSVDDIRTLIYLSYNSLFSYTIAAKGQAHSTWGQA---QANDGVVVQMNSLNRFRNGTGILISGDRSSGFYAD 106 (482)
Q Consensus 30 p~~vv~p~~~~ev~~~v~~a~~~~~~~~~~~~g~g~~~~~~~---~~~~~vvidl~~~~~~~~~~~i~~~~~~~~~~~~~ 106 (482)
....+.|.|.+|+.++++.- . .-++.+||+++.... .....++||++++..+ +.|+.+. ..++
T Consensus 228 ~~~~~~P~tl~ea~~ll~~~----~--~a~ivAGGTdl~~~~~~~~~~~~~lIdi~~I~eL---~~I~~~~-----~~l~ 293 (1319)
T PLN02906 228 GLTWYRPTSLQHLLELKAEY----P--DAKLVVGNTEVGIEMRFKNAQYPVLISPTHVPEL---NAIKVKD-----DGLE 293 (1319)
T ss_pred CceEECcCCHHHHHHHHHhC----C--CCEEEEcCchhHHHhhhccCCCCeEEECCCChhh---hcEEecC-----CEEE
Confidence 34688999999999987632 1 246789999984221 1234789999986432 2456544 3799
Q ss_pred EcccccHHHHHHHHHhCC---------Cc---------cccCCCCCCcccccccccc
Q 044784 107 VGGEQLWIDVLNATLTRG---------LS---------PVSWTDYLYPTVGGTLSNA 145 (482)
Q Consensus 107 v~aG~~~~~l~~~l~~~g---------~~---------~~~~~~~~~~tvGG~~~~~ 145 (482)
++|++++.+|.+.|.+.= .. ..+..--+..||||+|.++
T Consensus 294 IGA~vT~~el~~~l~~~i~~~~~~~~~~~p~L~~~~~~ias~qIRN~aTiGGNI~~a 350 (1319)
T PLN02906 294 IGAAVRLSELQNLFRKVVKERPAHETSACKAFIEQLKWFAGTQIRNVASIGGNICTA 350 (1319)
T ss_pred EecCCcHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhCCHhhcCceechhhhccC
Confidence 999999999998654320 00 1222334567999999975
No 45
>TIGR03199 pucC xanthine dehydrogenase C subunit. This gene has been characterized in B. subtilis as the FAD binding-subunit of xanthine dehydrogenase (pucC), acting in conjunction with pucD, the molybdopterin-binding subunit and pucE, the FeS-binding subunit.
Probab=94.07 E-value=0.055 Score=51.79 Aligned_cols=96 Identities=13% Similarity=0.116 Sum_probs=60.9
Q ss_pred CCCHHHHHHHHHHHHhccCCCeEEEEcCCCCCCCC--cc--CCCcEEEEcCCCcCcCCCceEEEcCCCCCccEEEEcccc
Q 044784 36 PTSVDDIRTLIYLSYNSLFSYTIAAKGQAHSTWGQ--AQ--ANDGVVVQMNSLNRFRNGTGILISGDRSSGFYADVGGEQ 111 (482)
Q Consensus 36 p~~~~ev~~~v~~a~~~~~~~~~~~~g~g~~~~~~--~~--~~~~vvidl~~~~~~~~~~~i~~~~~~~~~~~~~v~aG~ 111 (482)
|.|.+|+.++++.. . ..++.+|||.+... .. .....+||++++..+ +.|+.+. ..++++|++
T Consensus 1 P~sl~ea~~ll~~~-----~-~a~ivaGgT~l~~~~~~~~~~~~~~lIdi~~i~eL---~~I~~~~-----~~l~IGA~v 66 (264)
T TIGR03199 1 PAALDEAWSLLEKA-----P-DSTFVSGSTLLQLQWEKGTLPMKQHLVSLEGIDEL---KGISTSD-----THVSIGALT 66 (264)
T ss_pred CCCHHHHHHHHHhC-----C-CCEEEEccChHHHHHhcCcCCCCCeEEEcCCChhh---CcEEecC-----CEEEEecCC
Confidence 78889998887732 1 35789999988421 11 124789999987532 2455433 479999999
Q ss_pred cHHHHHHH--HHhC--CCc-----cccCCCCCCcccccccccc
Q 044784 112 LWIDVLNA--TLTR--GLS-----PVSWTDYLYPTVGGTLSNA 145 (482)
Q Consensus 112 ~~~~l~~~--l~~~--g~~-----~~~~~~~~~~tvGG~~~~~ 145 (482)
++.+|.+. +.++ .+. ..+..--+..|+||++.++
T Consensus 67 t~~~l~~~~~i~~~~p~L~~a~~~ia~~qIRN~aTlGGNl~~~ 109 (264)
T TIGR03199 67 TLNECRKNPLIKRALPCFVDAASAIAAPGVRNRATIGGNIASG 109 (264)
T ss_pred cHHHHhhChHhHhHhHHHHHHHHHhcCHHHhcceecHHhccCc
Confidence 99999742 1110 011 2222234557999999864
No 46
>PLN00192 aldehyde oxidase
Probab=91.97 E-value=0.6 Score=54.89 Aligned_cols=106 Identities=12% Similarity=0.053 Sum_probs=70.1
Q ss_pred ccEEEECCCHHHHHHHHHHHHhccCCCeEEEEcCCCCCCCCc-cCCCcEEEEcCCCcCcCCCceEEEcCCCCCccEEEEc
Q 044784 30 PFAVLYPTSVDDIRTLIYLSYNSLFSYTIAAKGQAHSTWGQA-QANDGVVVQMNSLNRFRNGTGILISGDRSSGFYADVG 108 (482)
Q Consensus 30 p~~vv~p~~~~ev~~~v~~a~~~~~~~~~~~~g~g~~~~~~~-~~~~~vvidl~~~~~~~~~~~i~~~~~~~~~~~~~v~ 108 (482)
....+.|.|.+|+.++++.. ...+-.-++..|||++.-.- .....++||++++..+ +.|+.+. ..++++
T Consensus 233 ~~~~~~P~sl~ea~~ll~~~--~~~~~~a~lvAGgTdl~~~k~~~~p~~lIdi~~I~EL---~~I~~~~-----~~l~IG 302 (1344)
T PLN00192 233 RYRWYTPVSVEELQSLLESN--NFDGVSVKLVVGNTGTGYYKDEELYDKYIDIRHIPEL---SMIRRDE-----KGIEIG 302 (1344)
T ss_pred CceEECcCCHHHHHHHHHhC--CCCCCCeEEEEeCCcceeeeccCCCCeEEEcCCChhh---hcEEecC-----CEEEEe
Confidence 45689999999999987632 11122366788999875221 1134789999985422 2455544 479999
Q ss_pred ccccHHHHHHHHHhCCC----c---------cccCCCCCCcccccccccc
Q 044784 109 GEQLWIDVLNATLTRGL----S---------PVSWTDYLYPTVGGTLSNA 145 (482)
Q Consensus 109 aG~~~~~l~~~l~~~g~----~---------~~~~~~~~~~tvGG~~~~~ 145 (482)
|++++.++.+.+...-. . ..+..--+..|+||++.++
T Consensus 303 A~vTl~el~~~l~~~~~~~~~~p~L~~~~~~vAs~qIRN~aTlGGNI~~A 352 (1344)
T PLN00192 303 AVVTISKAIEALREESKSEYVFKKIADHMEKIASRFVRNTGSIGGNLVMA 352 (1344)
T ss_pred ecCcHHHHHHHHHhhccccchHHHHHHHHHHhcChhhccceechhhhccc
Confidence 99999999887655421 1 2222334557999999975
No 47
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=91.15 E-value=0.41 Score=56.18 Aligned_cols=102 Identities=8% Similarity=0.030 Sum_probs=68.6
Q ss_pred cEEEECCCHHHHHHHHHHHHhccCCCeEEEEcCCCCCCCCc---cCCCcEEEEcCCCcCcCCCceEEEcCCCCCccEEEE
Q 044784 31 FAVLYPTSVDDIRTLIYLSYNSLFSYTIAAKGQAHSTWGQA---QANDGVVVQMNSLNRFRNGTGILISGDRSSGFYADV 107 (482)
Q Consensus 31 ~~vv~p~~~~ev~~~v~~a~~~~~~~~~~~~g~g~~~~~~~---~~~~~vvidl~~~~~~~~~~~i~~~~~~~~~~~~~v 107 (482)
...+.|.|.+|+.++++.. . .-++.+||+++.... ......+||+++...+ +.|+.+. ..+++
T Consensus 237 ~~~~~P~tl~ea~~ll~~~-----~-~a~lvAGGTdl~~~~k~~~~~~~~lIdi~~I~EL---~~i~~~~-----~~l~I 302 (1330)
T TIGR02969 237 MMWISPVTLKELLEAKFKY-----P-QAPVVMGNTSVGPEVKFKGVFHPVIISPDRIEEL---SVVNHTG-----DGLTL 302 (1330)
T ss_pred ceEECCCCHHHHHHHHHhC-----C-CCEEEecCcchHHHhhhccCCCCeEEECCCChhh---hcEEEcC-----CEEEE
Confidence 4688999999999987632 1 346789999985221 1233589999986532 2455543 47999
Q ss_pred cccccHHHHHHHHHhC---------CCc---------cccCCCCCCccccccccccc
Q 044784 108 GGEQLWIDVLNATLTR---------GLS---------PVSWTDYLYPTVGGTLSNAG 146 (482)
Q Consensus 108 ~aG~~~~~l~~~l~~~---------g~~---------~~~~~~~~~~tvGG~~~~~g 146 (482)
+|++++.+|.+.|.+. ... ..+..--+..|+||++.++.
T Consensus 303 GA~vT~~el~~~l~~~i~~~p~~~~~~~p~L~~a~~~ias~qIRN~gTlGGNi~~as 359 (1330)
T TIGR02969 303 GAGLSLAQVKDILADVVQKLPEETTQTYRALLKHLGTLAGSQIRNMASLGGHIISRH 359 (1330)
T ss_pred eccccHHHHHHHHHHhhhcCchhhhHHHHHHHHHHHHhCChhhcccccchhhcccCC
Confidence 9999999999865432 111 22223345679999999763
No 48
>COG1319 CoxM Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]
Probab=90.97 E-value=0.6 Score=44.83 Aligned_cols=103 Identities=18% Similarity=0.199 Sum_probs=66.1
Q ss_pred ccEEEECCCHHHHHHHHHHHHhccCCCeEEEEcCCCCCCCCc---cCCCcEEEEcCCCcCcCCCceEEEcCCCCCccEEE
Q 044784 30 PFAVLYPTSVDDIRTLIYLSYNSLFSYTIAAKGQAHSTWGQA---QANDGVVVQMNSLNRFRNGTGILISGDRSSGFYAD 106 (482)
Q Consensus 30 p~~vv~p~~~~ev~~~v~~a~~~~~~~~~~~~g~g~~~~~~~---~~~~~vvidl~~~~~~~~~~~i~~~~~~~~~~~~~ 106 (482)
+..+.+|.|.+|...+++.. . --.+.+|||++.... .....-+||++++... ..+....+ +.++
T Consensus 3 ~f~y~rp~Sv~eA~~ll~~~-----~-~a~~laGGt~L~~~~k~~~~~p~~lVdI~~l~~~---~~~~~~~g----~~l~ 69 (284)
T COG1319 3 NFEYYRPASVEEALNLLARA-----P-DAKYLAGGTDLLPLMKLGIERPDHLVDINGLDEL---LGIVTTEG----GSLR 69 (284)
T ss_pred ceEEECCCCHHHHHHHHHhC-----C-CcEEeeCcchHHHHhhcccCCcceEEEecCChhh---hceEeecC----CEEE
Confidence 56789999999999888743 3 567899999987322 2245678999987310 13333333 5799
Q ss_pred EcccccHHHHHHHHHhCCCc---------cccCCCCCCcccccccccc
Q 044784 107 VGGEQLWIDVLNATLTRGLS---------PVSWTDYLYPTVGGTLSNA 145 (482)
Q Consensus 107 v~aG~~~~~l~~~l~~~g~~---------~~~~~~~~~~tvGG~~~~~ 145 (482)
++|-+++.+|.+-=.-+... ..++.--+.+||||++..+
T Consensus 70 IGA~vt~~ei~~~~~~~~~~p~L~ea~~~ia~~qvRN~aTiGGn~c~a 117 (284)
T COG1319 70 IGALVTLTEIARHPAVRRIPPALSEAASAIASPQVRNRATIGGNLCNA 117 (284)
T ss_pred EeecccHHHHHhChhhhhhchHHHHHHHHhcChhhcceeeecchhccC
Confidence 99999999986332212211 1122223456999997754
No 49
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]
Probab=89.77 E-value=0.88 Score=44.57 Aligned_cols=143 Identities=16% Similarity=0.079 Sum_probs=80.7
Q ss_pred CCccEEEECCCHHHHHHHHHHHHhccCCCeEEEEcCCCCCCCCcc--C-CCcEEEEcCCCcCcCCCceEEEcCCCCCccE
Q 044784 28 EKPFAVLYPTSVDDIRTLIYLSYNSLFSYTIAAKGQAHSTWGQAQ--A-NDGVVVQMNSLNRFRNGTGILISGDRSSGFY 104 (482)
Q Consensus 28 ~~p~~vv~p~~~~ev~~~v~~a~~~~~~~~~~~~g~g~~~~~~~~--~-~~~vvidl~~~~~~~~~~~i~~~~~~~~~~~ 104 (482)
.....++.|.+.+|++.++.. .- ..++..|++.+.--.. - .-..||-+.++..+ +.|++.. ..
T Consensus 201 ~~~~r~~~P~~l~D~a~l~aa----~P--~AtivAGsTDvgLwVtk~mr~l~~vi~v~~l~eL---~~i~~~~-----~~ 266 (493)
T COG4630 201 SGDDRFIVPATLADFADLLAA----HP--GATIVAGSTDVGLWVTKQMRDLNPVIFVGHLAEL---RRIEVST-----GG 266 (493)
T ss_pred CCCceeEeeccHHHHHHHHhh----CC--CCEEEecCcchhhHHHHHHhhcCCeEEecchhhh---heeeecC-----Cc
Confidence 345568999999999998662 22 4566777776642211 1 22445555654321 1344443 58
Q ss_pred EEEcccccHHHHHHHHHhCC-----Cc--cccCCCCCCccccccccccccCCCCCcCCCccccEEEEEEEecCCeEEEec
Q 044784 105 ADVGGEQLWIDVLNATLTRG-----LS--PVSWTDYLYPTVGGTLSNAGISGHTYQKGPQITNVLELDVLTGKGEFVTCS 177 (482)
Q Consensus 105 ~~v~aG~~~~~l~~~l~~~g-----~~--~~~~~~~~~~tvGG~~~~~g~g~~~~~~G~~~d~v~~~~vv~~~G~~~~~~ 177 (482)
++++||+++.|..+.|..+= +. ..+-.--+..|+||+|++++--+-+ ...=..++.++++-.|.-.+.-
T Consensus 267 l~iGAgvt~t~a~~~la~~~P~l~~L~~r~gg~qvRN~gTlGGNIangSPIGDt----PPaLIALgA~ltLr~g~~~Rtl 342 (493)
T COG4630 267 LEIGAGVTYTQAYRALAGRYPALGELWDRFGGEQVRNMGTLGGNIANGSPIGDT----PPALIALGATLTLRSGDGRRTL 342 (493)
T ss_pred EEEccCccHHHHHHHHHhhCchHHHHHHHhcchhhhccccccccccCCCcCCCC----CchhhhcCcEEEEEecCCcccc
Confidence 99999999999999997541 11 1111122335999999986321111 0111245666666555443332
Q ss_pred CCCCchhHHhHhc
Q 044784 178 PQKDSELFYAVLG 190 (482)
Q Consensus 178 ~~~~~dl~~~~~g 190 (482)
+ -.|.|-++.-
T Consensus 343 P--Le~~Fi~Y~k 353 (493)
T COG4630 343 P--LEDYFIAYGK 353 (493)
T ss_pred c--HHHHHHHhhh
Confidence 2 2366666543
No 50
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=62.71 E-value=4.3 Score=41.02 Aligned_cols=26 Identities=19% Similarity=0.488 Sum_probs=21.5
Q ss_pred HHhhccchhHHHHhhhcCCCCCCCCCC
Q 044784 450 IIHFGSKWNTFQQRKTRFDPRMILSPG 476 (482)
Q Consensus 450 ~~~yG~~~~~L~~iK~~~DP~nifnpg 476 (482)
...| .|++++.++|+++||+|+|...
T Consensus 481 i~ky-~n~~~flkvr~~lDP~~lFsse 506 (518)
T KOG4730|consen 481 IRKY-KNLDKFLKVRKELDPKGLFSSE 506 (518)
T ss_pred HHhc-cChHHHHHHHHhcCccchhhhh
Confidence 3444 6999999999999999999643
No 51
>TIGR00178 monomer_idh isocitrate dehydrogenase, NADP-dependent, monomeric type. The monomeric type of isocitrate dehydrogenase has been found so far in a small number of species, including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. It is NADP-specific.
Probab=44.18 E-value=3.1e+02 Score=29.27 Aligned_cols=146 Identities=11% Similarity=0.076 Sum_probs=78.1
Q ss_pred CCC-HHHHHHHHHHHHhccCCCeEEEEcCCCCCCCCccCCCcEEEEcCC--CcCcCCCceEEEcCCCCCccEEEEcccc-
Q 044784 36 PTS-VDDIRTLIYLSYNSLFSYTIAAKGQAHSTWGQAQANDGVVVQMNS--LNRFRNGTGILISGDRSSGFYADVGGEQ- 111 (482)
Q Consensus 36 p~~-~~ev~~~v~~a~~~~~~~~~~~~g~g~~~~~~~~~~~~vvidl~~--~~~~~~~~~i~~~~~~~~~~~~~v~aG~- 111 (482)
|.+ .+||.+-++.+ -.++-++..+-+-.+++..-.+ ..|+||-|- |-| +. .-..+++....-+..|=|--
T Consensus 308 p~~~~~eI~a~i~~~--~~~~P~laMVnSdkGITNLHvP-sDVIIDASMPAmIR--~~-GkmW~~dG~~~Dt~avIPD~s 381 (741)
T TIGR00178 308 PAAQQEEIEADLQAV--YAQRPELAMVNSDKGITNLHVP-SDVIVDASMPAMIR--AS-GKMWGPDGKLKDTKAVIPDRC 381 (741)
T ss_pred ChhhHHHHHHHHHHH--HhhCCCEEEeccCCCccccCCC-cCeEEecCcHHHHh--cc-CCccCCCCCcccceeecCCcc
Confidence 444 47799999998 4778888888877777666555 578998763 321 00 11111211001122232322
Q ss_pred ---cHHHHHHHHHhCCCc-cccCCCCCCccccccccccccCCCCCcCCCccccEEEEEEEecCCeEEEecCCCCchhHHh
Q 044784 112 ---LWIDVLNATLTRGLS-PVSWTDYLYPTVGGTLSNAGISGHTYQKGPQITNVLELDVLTGKGEFVTCSPQKDSELFYA 187 (482)
Q Consensus 112 ---~~~~l~~~l~~~g~~-~~~~~~~~~~tvGG~~~~~g~g~~~~~~G~~~d~v~~~~vv~~~G~~~~~~~~~~~dl~~~ 187 (482)
...++.+.|.++|-. |..+++-+.+++..-=+. -+|.+...|-...|- .++||+.+|+++..-.-+..|+|++
T Consensus 382 YA~vYq~~I~~ck~nGafDp~TmGsV~NVGLMAqKAE-EYGSHdkTFei~~~G--~v~Vvd~~G~vl~eh~Ve~GDIwRm 458 (741)
T TIGR00178 382 YAGVYQVVIEDCKQNGAFDPTTMGTVPNVGLMAQKAE-EYGSHDKTFQIPADG--VVRVVDSSGEVLLEQSVEAGDIWRM 458 (741)
T ss_pred chHHHHHHHHHHHhcCCCCcccccCCcchhHhHHHHH-HhcCCCcceecCCCc--eEEEEeCCCCEEEEeeccCCcchhh
Confidence 256777888899965 554443332222211111 112221111111222 3678899999887655555688877
Q ss_pred Hhc
Q 044784 188 VLG 190 (482)
Q Consensus 188 ~~g 190 (482)
+.-
T Consensus 459 cq~ 461 (741)
T TIGR00178 459 CQV 461 (741)
T ss_pred hhc
Confidence 643
No 52
>PRK04322 peptidyl-tRNA hydrolase; Provisional
Probab=40.47 E-value=52 Score=26.93 Aligned_cols=45 Identities=9% Similarity=-0.012 Sum_probs=33.7
Q ss_pred HHhhhcCCcCCCCccEEEECCCHHHHHHHHHHHHhccCCCeE-EEEcCCC
Q 044784 17 LASIDYGHIIKEKPFAVLYPTSVDDIRTLIYLSYNSLFSYTI-AAKGQAH 65 (482)
Q Consensus 17 ~~~~~~~~~~~~~p~~vv~p~~~~ev~~~v~~a~~~~~~~~~-~~~g~g~ 65 (482)
.+...|.. .+.+.+|++..|++|+..+.+.| ++.+++. .++-+|+
T Consensus 37 ~~~~~W~~--~G~~Kvvlkv~~~~el~~l~~~a--~~~~l~~~~v~DAG~ 82 (113)
T PRK04322 37 EWLEEWLN--EGQKKVVLKVNSEEELLELKEKA--ERLGLPTALIRDAGL 82 (113)
T ss_pred HHHHHHHH--CCCcEEEEeCCCHHHHHHHHHHH--HHcCCCEEEEEeCCC
Confidence 34456753 56789999999999999999999 7888774 3444443
No 53
>PF03614 Flag1_repress: Repressor of phase-1 flagellin; InterPro: IPR003223 Flagellin is the subunit which polymerises to form the filaments of bacterial flagella. The proteins in this family are transcriptional repressors of phase-1 flagellin genes.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent
Probab=31.40 E-value=1.5e+02 Score=25.39 Aligned_cols=35 Identities=6% Similarity=0.101 Sum_probs=29.1
Q ss_pred EEEECCCHHHHHHHHHHHHhccCCCeEEEEcC-CCCCC
Q 044784 32 AVLYPTSVDDIRTLIYLSYNSLFSYTIAAKGQ-AHSTW 68 (482)
Q Consensus 32 ~vv~p~~~~ev~~~v~~a~~~~~~~~~~~~g~-g~~~~ 68 (482)
+=+.|.+-+-++..+++. +.+++|+++... |+++.
T Consensus 8 AEvwprdys~ler~l~f~--r~~~~pVrvv~~ng~~f~ 43 (165)
T PF03614_consen 8 AEVWPRDYSMLERRLQFW--RFNDIPVRVVSENGQVFC 43 (165)
T ss_pred cccCcchHHHHHHHHHHH--HhcCCceEEEecCCcEEE
Confidence 357899999999999999 899999999874 55543
No 54
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=31.23 E-value=82 Score=30.89 Aligned_cols=51 Identities=20% Similarity=0.163 Sum_probs=30.7
Q ss_pred HHHHHhhhcCCcCCCCccEEEECCC------HHHHHHHHHHHHhc----cCCCeEEEEcCCC
Q 044784 14 AIKLASIDYGHIIKEKPFAVLYPTS------VDDIRTLIYLSYNS----LFSYTIAAKGQAH 65 (482)
Q Consensus 14 ~~~~~~~~~~~~~~~~p~~vv~p~~------~~ev~~~v~~a~~~----~~~~~~~~~g~g~ 65 (482)
.+......-.. ..+....+++|.. +++|.++++.++.. ...+=+.+||||+
T Consensus 27 a~~D~~~~~~~-r~~~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs 87 (319)
T PF02601_consen 27 AIQDFLRTLKR-RNPIVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGS 87 (319)
T ss_pred HHHHHHHHHHH-hCCCcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCCC
Confidence 34444444333 2233556777765 68999999999311 1346677788765
No 55
>COG2838 Icd Monomeric isocitrate dehydrogenase [Energy production and conversion]
Probab=29.44 E-value=1.1e+02 Score=31.50 Aligned_cols=141 Identities=13% Similarity=0.095 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHhccCCCeEEEEcCCCCCCCCccCCCcEEEEcCC--CcCcCCCceEEEcCCCCCccEEEEccccc----H
Q 044784 40 DDIRTLIYLSYNSLFSYTIAAKGQAHSTWGQAQANDGVVVQMNS--LNRFRNGTGILISGDRSSGFYADVGGEQL----W 113 (482)
Q Consensus 40 ~ev~~~v~~a~~~~~~~~~~~~g~g~~~~~~~~~~~~vvidl~~--~~~~~~~~~i~~~~~~~~~~~~~v~aG~~----~ 113 (482)
+||.+-+..+ -+++--+..+-+-.+++..-.+ ..|++|-|- |-| +. .-..+.+....-|-.|-|--+ .
T Consensus 315 ~eI~~~~~~~--~a~~p~laMVdS~kGItNlhvP-SDVIVDASMPAMir--~s-g~mw~~dgk~kDTkAviPdstya~iY 388 (744)
T COG2838 315 AEIEADIHAV--YAHRPDLAMVDSDKGITNLHVP-SDVIVDASMPAMIR--NS-GRMWGKDGKLKDTKAVIPDSTYAGIY 388 (744)
T ss_pred HHHHHHHHHH--HhcCCcceeeecccCcccccCC-cceeeeCCcHHHHh--cc-ccccCCccccccccccCcchhHHHHH
Confidence 5777777777 4666667666666666555455 467787663 421 00 011111100011222223322 4
Q ss_pred HHHHHHHHhCCCc-cccCCCCCCccccccccccccCCCCCcCCCccccEEEEEEEecCCeEEEecCCCCchhHHhHh
Q 044784 114 IDVLNATLTRGLS-PVSWTDYLYPTVGGTLSNAGISGHTYQKGPQITNVLELDVLTGKGEFVTCSPQKDSELFYAVL 189 (482)
Q Consensus 114 ~~l~~~l~~~g~~-~~~~~~~~~~tvGG~~~~~g~g~~~~~~G~~~d~v~~~~vv~~~G~~~~~~~~~~~dl~~~~~ 189 (482)
.++.+.|..+|-. |..+++-+.+++..--+. -+|.+...|-.-.|-+ ++||+++|+++-...-+-.|+|+++.
T Consensus 389 q~vI~~ck~nGafdPttmGsVpNVGLMAqkAe-EYGSHdKTF~i~~dGv--~~vv~~~G~VLleh~Ve~gDiwR~cq 462 (744)
T COG2838 389 QEVIDFCKTNGAFDPTTMGTVPNVGLMAQKAE-EYGSHDKTFEIEADGV--VRVVDANGKVLLEHDVEAGDIWRMCQ 462 (744)
T ss_pred HHHHHHHHhcCCcCcccccCCCchHHHHHHHH-HhCCCCceEEecCCce--EEEEecCCcEeeecccccccHHHHHh
Confidence 5677888899965 655555444433332221 1333333333333444 56789999988765555568887764
No 56
>KOG3282 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.15 E-value=98 Score=27.52 Aligned_cols=37 Identities=8% Similarity=-0.043 Sum_probs=29.6
Q ss_pred hhcCCcCCCCccEEEECCCHHHHHHHHHHHHhccCCCeEEE
Q 044784 20 IDYGHIIKEKPFAVLYPTSVDDIRTLIYLSYNSLFSYTIAA 60 (482)
Q Consensus 20 ~~~~~~~~~~p~~vv~p~~~~ev~~~v~~a~~~~~~~~~~~ 60 (482)
..|- ..+.|..||+..+++++.++.+.| +..+++...
T Consensus 117 ~~We--~~GQ~KIvvk~~~e~~l~~l~~~A--~~~gl~t~~ 153 (190)
T KOG3282|consen 117 RRWE--NCGQAKIVVKAESEEELMELQKDA--KKLGLYTHL 153 (190)
T ss_pred HHHH--HcCCceEEEEcCCHHHHHHHHHHH--HHcCCcEEE
Confidence 4564 467899999999999999999999 677765443
No 57
>PF01981 PTH2: Peptidyl-tRNA hydrolase PTH2; InterPro: IPR002833 Peptidyl-tRNA hydrolases are enzymes that release tRNAs from peptidyl-tRNA during translation.; GO: 0004045 aminoacyl-tRNA hydrolase activity; PDB: 1RLK_A 1XTY_C 2ZV3_I 2D3K_A 1WN2_A 1Q7S_A 3ERJ_B 1RZW_A.
Probab=26.07 E-value=1.1e+02 Score=25.02 Aligned_cols=46 Identities=9% Similarity=-0.008 Sum_probs=33.7
Q ss_pred HHhhhcCCcCCCCccEEEECCCHHHHHHHHHHHHhccCCCeEE-EEcCCCC
Q 044784 17 LASIDYGHIIKEKPFAVLYPTSVDDIRTLIYLSYNSLFSYTIA-AKGQAHS 66 (482)
Q Consensus 17 ~~~~~~~~~~~~~p~~vv~p~~~~ev~~~v~~a~~~~~~~~~~-~~g~g~~ 66 (482)
.....|.. .+.+.+|++..|++|+.++.+.| +..++|.. ++-.|+.
T Consensus 40 ~~~~~W~~--~g~~Kivlkv~~e~~L~~l~~~a--~~~gl~~~~i~Dag~T 86 (116)
T PF01981_consen 40 EWLREWEN--NGQKKIVLKVPSEEELLELAKKA--KEAGLPHYLIRDAGRT 86 (116)
T ss_dssp HHHHHHHH--TTTSEEEEEESSHHHHHHHHHHH--HHTT-SEEEEEETSSS
T ss_pred HHHHHHhc--CCCceEEEEeCCHHHHHHHHHHH--HHCCCCEEEEEECCCC
Confidence 34455643 56789999999999999999999 78888864 3445543
No 58
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=26.04 E-value=88 Score=27.01 Aligned_cols=28 Identities=11% Similarity=0.237 Sum_probs=23.4
Q ss_pred EEEECCCHHHHHHHHHHHHhccCCCeEEEE
Q 044784 32 AVLYPTSVDDIRTLIYLSYNSLFSYTIAAK 61 (482)
Q Consensus 32 ~vv~p~~~~ev~~~v~~a~~~~~~~~~~~~ 61 (482)
.|+.|.+.+|+..++++|- +..-|+.+|
T Consensus 126 ~v~~Ps~~~~~~~ll~~a~--~~~~P~~ir 153 (156)
T cd07033 126 TVLRPADANETAAALEAAL--EYDGPVYIR 153 (156)
T ss_pred EEEecCCHHHHHHHHHHHH--hCCCCEEEE
Confidence 5899999999999999994 445588776
No 59
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=25.93 E-value=2.6e+02 Score=23.98 Aligned_cols=64 Identities=13% Similarity=0.010 Sum_probs=41.8
Q ss_pred CCCeec-ChhHHHHHhhhcCCcCCCCccEEEECCCHHHHHHHHHHHHhccCCCeEEEEcCCCCCCCCcc
Q 044784 5 TDNLRT-DPGAIKLASIDYGHIIKEKPFAVLYPTSVDDIRTLIYLSYNSLFSYTIAAKGQAHSTWGQAQ 72 (482)
Q Consensus 5 ~~~v~~-~~~~~~~~~~~~~~~~~~~p~~vv~p~~~~ev~~~v~~a~~~~~~~~~~~~g~g~~~~~~~~ 72 (482)
.+++.. .......+...|+. ......+.|.+.+++.+.++.+. ++.+.-+.+..||.+....+.
T Consensus 14 ~g~i~d~n~~~l~~~l~~~G~---~v~~~~~v~Dd~~~i~~~l~~~~-~~~~~DlVittGG~s~g~~D~ 78 (152)
T cd00886 14 AGEAEDRSGPALVELLEEAGH---EVVAYEIVPDDKDEIREALIEWA-DEDGVDLILTTGGTGLAPRDV 78 (152)
T ss_pred CCCCccchHHHHHHHHHHcCC---eeeeEEEcCCCHHHHHHHHHHHH-hcCCCCEEEECCCcCCCCCcC
Confidence 444443 23345555566653 12346778999999999999772 212677899999988875544
No 60
>cd02407 PTH2_family Peptidyl-tRNA hydrolase, type 2 (PTH2)_like . Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity, Pth present in bacteria and eukaryotes and Pth2 present in archaea and eukaryotes.
Probab=24.86 E-value=1.5e+02 Score=24.25 Aligned_cols=36 Identities=11% Similarity=0.066 Sum_probs=29.1
Q ss_pred hhhcCCcCCCCccEEEECCCHHHHHHHHHHHHhccCCCeE
Q 044784 19 SIDYGHIIKEKPFAVLYPTSVDDIRTLIYLSYNSLFSYTI 58 (482)
Q Consensus 19 ~~~~~~~~~~~p~~vv~p~~~~ev~~~v~~a~~~~~~~~~ 58 (482)
...|. ..+.+.+|+...+++|+.++.+.| ++.+++.
T Consensus 41 ~~~W~--~~g~~KvVl~v~~~~~l~~l~~~a--~~~gl~~ 76 (115)
T cd02407 41 LRAWE--LEGQKKVVLKVPSEEELLELAKKA--KELGLPH 76 (115)
T ss_pred HHHHH--hCCCcEEEEECCCHHHHHHHHHHH--HHcCCCe
Confidence 34564 467789999999999999999999 6777764
No 61
>KOG0430 consensus Xanthine dehydrogenase [Nucleotide transport and metabolism]
Probab=24.49 E-value=2e+02 Score=33.16 Aligned_cols=101 Identities=7% Similarity=0.092 Sum_probs=61.5
Q ss_pred cEEEECCCHHHHHHHHHHHHhccCCCeEEEEcCCCC--CCCCccCCCcEEEEcCCCcCcCCCceEEEcCCCCCccEEEEc
Q 044784 31 FAVLYPTSVDDIRTLIYLSYNSLFSYTIAAKGQAHS--TWGQAQANDGVVVQMNSLNRFRNGTGILISGDRSSGFYADVG 108 (482)
Q Consensus 31 ~~vv~p~~~~ev~~~v~~a~~~~~~~~~~~~g~g~~--~~~~~~~~~~vvidl~~~~~~~~~~~i~~~~~~~~~~~~~v~ 108 (482)
..-..|.|.+|+..+.+. ........|-|. +.-... .-...||.+....+ +.+++|.+ .++++
T Consensus 215 ~~W~~P~sl~eL~~~~~~------~~~~~Lv~GNT~~gv~~r~~-~~~~~Id~~~v~el---~~~~~~~~-----gi~lG 279 (1257)
T KOG0430|consen 215 IRWYWPVSLEELFELKAN------KPDAKLVAGNTAHGVYRRSP-DYQKFIDVSGVPEL---KALNVDDN-----GLELG 279 (1257)
T ss_pred cEEeCcccHHHHHHHHhc------CcceEEEeccccceEEeccC-CCcceechhcCchh---hhcccCCC-----ceEEc
Confidence 346789999999998762 223444444443 332221 23467888875421 13344444 69999
Q ss_pred ccccHHHHHHHHHhCCCc---------------cccCCCCCCccccccccccc
Q 044784 109 GEQLWIDVLNATLTRGLS---------------PVSWTDYLYPTVGGTLSNAG 146 (482)
Q Consensus 109 aG~~~~~l~~~l~~~g~~---------------~~~~~~~~~~tvGG~~~~~g 146 (482)
+++++.++.+.|.+.--. ..+.+--+..|+||+|.+..
T Consensus 280 a~~sls~~~~~l~~~~~~~~~~~~~~~~~hl~~~A~~~IRN~atigGnI~~~~ 332 (1257)
T KOG0430|consen 280 AALSLSETMELLRKLVKRPGFEYFKALWEHLKWFANVQIRNVGTIGGNICTKA 332 (1257)
T ss_pred ccccHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhcccceeccccccceeEecc
Confidence 999999999988743212 22333345679999997643
No 62
>PF09330 Lact-deh-memb: D-lactate dehydrogenase, membrane binding; InterPro: IPR015409 Members of this entry are predominantly found in prokaryotic D-lactate dehydrogenase, forming the cap-membrane-binding domain, which consists of a large seven-stranded antiparallel beta-sheet flanked on both sides by alpha-helices. They allow for membrane association []. ; GO: 0050660 flavin adenine dinucleotide binding, 0055085 transmembrane transport; PDB: 1F0X_A.
Probab=23.66 E-value=1e+02 Score=29.42 Aligned_cols=20 Identities=20% Similarity=0.426 Sum_probs=12.5
Q ss_pred hHHHHhhhcCCCCCCCCCCC
Q 044784 458 NTFQQRKTRFDPRMILSPGQ 477 (482)
Q Consensus 458 ~~L~~iK~~~DP~nifnpgk 477 (482)
+.|++-=++.||.|-||||-
T Consensus 263 p~L~~fY~~lDPtNsfNPGI 282 (291)
T PF09330_consen 263 PALKAFYRKLDPTNSFNPGI 282 (291)
T ss_dssp HHHHHHHHHH-TT--BSTTT
T ss_pred HHHHHHHHhcCCCcCCCCCc
Confidence 44555667789999999984
No 63
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=23.56 E-value=1.3e+02 Score=31.64 Aligned_cols=43 Identities=19% Similarity=0.363 Sum_probs=32.0
Q ss_pred CCCccEEEECCCHHHHHHHHHHHHhccC-CCeEEEE-----cCCC-CCCCCc
Q 044784 27 KEKPFAVLYPTSVDDIRTLIYLSYNSLF-SYTIAAK-----GQAH-STWGQA 71 (482)
Q Consensus 27 ~~~p~~vv~p~~~~ev~~~v~~a~~~~~-~~~~~~~-----g~g~-~~~~~~ 71 (482)
.+.|-+.++|-+.++|.+++++| +++ ..||.+. +||| |+....
T Consensus 149 ~G~~yv~fKPGtIeqI~svi~IA--ka~P~~pIilq~egGraGGHHSweDld 198 (717)
T COG4981 149 DGFPYVAFKPGTIEQIRSVIRIA--KANPTFPIILQWEGGRAGGHHSWEDLD 198 (717)
T ss_pred cCceeEEecCCcHHHHHHHHHHH--hcCCCCceEEEEecCccCCccchhhcc
Confidence 46789999999999999999999 444 4666653 4454 666543
No 64
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=23.05 E-value=1.5e+02 Score=30.67 Aligned_cols=34 Identities=26% Similarity=0.305 Sum_probs=24.8
Q ss_pred ccEEEECCCH------HHHHHHHHHHHhccC--CCeEEEEcCCC
Q 044784 30 PFAVLYPTSV------DDIRTLIYLSYNSLF--SYTIAAKGQAH 65 (482)
Q Consensus 30 p~~vv~p~~~------~ev~~~v~~a~~~~~--~~~~~~~g~g~ 65 (482)
...+++|..+ .+|.+.++.+ +.. .+=|.+||||+
T Consensus 163 ~~~~~~~~~vQG~~A~~~i~~al~~~--~~~~~Dviii~RGGGS 204 (438)
T PRK00286 163 VEVIIYPTLVQGEGAAASIVAAIERA--NARGEDVLIVARGGGS 204 (438)
T ss_pred CeEEEecCcCcCccHHHHHHHHHHHh--cCCCCCEEEEecCCCC
Confidence 4677888766 8899999888 443 56677787763
No 65
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=22.72 E-value=3.9e+02 Score=24.13 Aligned_cols=42 Identities=10% Similarity=-0.001 Sum_probs=32.5
Q ss_pred cEEEECCCHHHHHHHHHHHHhccCCCeEEEEcCCCCCCCCccC
Q 044784 31 FAVLYPTSVDDIRTLIYLSYNSLFSYTIAAKGQAHSTWGQAQA 73 (482)
Q Consensus 31 ~~vv~p~~~~ev~~~v~~a~~~~~~~~~~~~g~g~~~~~~~~~ 73 (482)
...+.|.+.++|++.++.+. .+.+.-+++..||++....+..
T Consensus 43 ~~~iVpDd~~~I~~aL~~a~-~~~~~DlIITTGGtg~g~rDvT 84 (193)
T PRK09417 43 ETRLIPDEQDLIEQTLIELV-DEMGCDLVLTTGGTGPARRDVT 84 (193)
T ss_pred EEEECCCCHHHHHHHHHHHh-hcCCCCEEEECCCCCCCCCCcH
Confidence 34677999999999998772 2257889999999998765543
No 66
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=22.21 E-value=1.5e+02 Score=30.49 Aligned_cols=33 Identities=24% Similarity=0.304 Sum_probs=21.4
Q ss_pred ccEEEECCC------HHHHHHHHHHHHhccCC-Ce--EEEEcCC
Q 044784 30 PFAVLYPTS------VDDIRTLIYLSYNSLFS-YT--IAAKGQA 64 (482)
Q Consensus 30 p~~vv~p~~------~~ev~~~v~~a~~~~~~-~~--~~~~g~g 64 (482)
..++++|.. .+||.+.|+.++ +.+ .- |+.||||
T Consensus 163 ~~viv~pt~VQG~~A~~eIv~aI~~an--~~~~~DvlIVaRGGG 204 (440)
T COG1570 163 VEVIVYPTLVQGEGAAEEIVEAIERAN--QRGDVDVLIVARGGG 204 (440)
T ss_pred CeEEEEeccccCCCcHHHHHHHHHHhh--ccCCCCEEEEecCcc
Confidence 456777765 489999999994 443 33 4445554
No 67
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=22.02 E-value=95 Score=24.74 Aligned_cols=35 Identities=11% Similarity=0.186 Sum_probs=29.0
Q ss_pred CCcc-EEEECCCHHHHHHHHHHHHhccCCCeEEEEcCC
Q 044784 28 EKPF-AVLYPTSVDDIRTLIYLSYNSLFSYTIAAKGQA 64 (482)
Q Consensus 28 ~~p~-~vv~p~~~~ev~~~v~~a~~~~~~~~~~~~g~g 64 (482)
+.|. .+|++.+..|++-++.+| +++|+|+...+.-
T Consensus 54 RvP~~vLVr~~~~pd~~Hl~~LA--~ekgVpVe~~~d~ 89 (100)
T PF15608_consen 54 RVPWKVLVRDPDDPDLAHLLLLA--EEKGVPVEVYPDL 89 (100)
T ss_pred cCCCEEEECCCCCccHHHHHHHH--HHcCCcEEEeCCC
Confidence 4454 567778889999999999 8999999998754
No 68
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=21.97 E-value=79 Score=28.27 Aligned_cols=25 Identities=0% Similarity=0.045 Sum_probs=20.9
Q ss_pred HHHHHHHHHhccCCCeEEEEcCCCCCC
Q 044784 42 IRTLIYLSYNSLFSYTIAAKGQAHSTW 68 (482)
Q Consensus 42 v~~~v~~a~~~~~~~~~~~~g~g~~~~ 68 (482)
+...++++ +++++|+.+.++|....
T Consensus 78 fKef~e~i--ke~di~fiVvSsGm~~f 102 (220)
T COG4359 78 FKEFVEWI--KEHDIPFIVVSSGMDPF 102 (220)
T ss_pred HHHHHHHH--HHcCCCEEEEeCCCchH
Confidence 34567788 79999999999998875
No 69
>TIGR00283 arch_pth2 peptidyl-tRNA hydrolase. This model describes an archaeal/eukaryotic form of peptidyl-tRNA hydrolase. Most bacterial forms are described by TIGR00447.
Probab=20.11 E-value=1.9e+02 Score=23.70 Aligned_cols=42 Identities=10% Similarity=0.143 Sum_probs=31.8
Q ss_pred hhcCCcCCCCccEEEECCCHHHHHHHHHHHHhccCCCeEE-EEcCCC
Q 044784 20 IDYGHIIKEKPFAVLYPTSVDDIRTLIYLSYNSLFSYTIA-AKGQAH 65 (482)
Q Consensus 20 ~~~~~~~~~~p~~vv~p~~~~ev~~~v~~a~~~~~~~~~~-~~g~g~ 65 (482)
..|.. .+.+.++++..|++|+..+.+.| ++.+++.. ++=.|+
T Consensus 42 ~~W~~--~G~~KVvlk~~~~~el~~l~~~a--~~~~l~~~~v~DAG~ 84 (115)
T TIGR00283 42 RKWLD--EGQKKVVLKVNSLEELLEIYHKA--ESLGLVTGLIRDAGH 84 (115)
T ss_pred HHHHH--cCCCEEEEEeCCHHHHHHHHHHH--HHcCCCEEEEEcCCc
Confidence 44532 56788999999999999999999 78888864 444444
Done!