BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044785
(346 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BO2|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Calcium.
pdb|2BO2|B Chain B, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Calcium.
pdb|2BOU|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Barium.
pdb|2BOX|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Strontium
Length = 143
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 44/94 (46%), Gaps = 10/94 (10%)
Query: 237 ITTKETCEEAKICGL--NASCHKPKDNTTTSSGYHCKCNEGYE---GNPYL----SDGCQ 287
T ETC++ C SC K D T Y C C+ GYE G + CQ
Sbjct: 35 TTPMETCDDINECATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQ 94
Query: 288 DVNECEDPSLNNCTRTHICDNIPGSYTCRCRKGF 321
DV+EC + C + +C N GSY+CRCR G+
Sbjct: 95 DVDECSS-GQHQCDSSTVCFNTVGSYSCRCRPGW 127
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 258 PKDNTTTSSGYHCKCNEGYEGNPYL----SDGCQDVNECEDPSLNNCTRTHICDNIPGSY 313
P+D++ ++ C+CN G+ + + C D+NEC S +C + C N GSY
Sbjct: 10 PQDSSCVNA-TACRCNPGFSSFSEIITTPMETCDDINECATLSKVSCGKFSDCWNTEGSY 68
Query: 314 TCRCRKGFH 322
C C G+
Sbjct: 69 DCVCSPGYE 77
>pdb|3P5B|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 400
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 6/58 (10%)
Query: 267 GYHCKCNEGYEGNPYLSDGCQDVNECEDPSLNNCTRTHICDNIPGSYTCRCRKGFHGD 324
GY C C +G++ C+D++EC+DP T + +C N+ G Y C+C +GF D
Sbjct: 20 GYECLCPDGFQ--LVAQRRCEDIDECQDPD----TCSQLCVNLEGGYKCQCEEGFQLD 71
>pdb|3P5C|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 440
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 6/58 (10%)
Query: 267 GYHCKCNEGYEGNPYLSDGCQDVNECEDPSLNNCTRTHICDNIPGSYTCRCRKGFHGD 324
GY C C +G++ C+D++EC+DP T + +C N+ G Y C+C +GF D
Sbjct: 60 GYECLCPDGFQ--LVAQRRCEDIDECQDPD----TCSQLCVNLEGGYKCQCEEGFQLD 111
>pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The
Ldl Receptor
Length = 791
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 6/58 (10%)
Query: 267 GYHCKCNEGYEGNPYLSDGCQDVNECEDPSLNNCTRTHICDNIPGSYTCRCRKGFHGD 324
GY C C +G++ C+D++EC+DP T + +C N+ G Y C+C +GF D
Sbjct: 332 GYECLCPDGFQ--LVAQRRCEDIDECQDPD----TCSQLCVNLEGGYKCQCEEGFQLD 383
>pdb|1LMJ|A Chain A, Nmr Study Of The Fibrillin-1 Cbegf12-13 Pair Of Ca2+
Binding Epidermal Growth Factor-like Domains
Length = 86
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 262 TTTSSGYHCKCNEGYEGNPYLSDGCQDVNECE-DPSLNNCTRTHICDNIPGSYTCRCRKG 320
T + CKC+EGYE + C D++EC+ DP L R +C N GSY C C G
Sbjct: 19 VNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLL---CRGGVCHNTEGSYRCECPPG 75
Query: 321 FH 322
Sbjct: 76 HQ 77
>pdb|1N7D|A Chain A, Extracellular Domain Of The Ldl Receptor
Length = 699
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 6/58 (10%)
Query: 267 GYHCKCNEGYEGNPYLSDGCQDVNECEDPSLNNCTRTHICDNIPGSYTCRCRKGFHGD 324
GY C C +G++ C+D++EC+DP T + +C N+ G Y C+C +GF D
Sbjct: 314 GYECLCPDGFQ--LVAQRRCEDIDECQDPD----TCSQLCVNLEGGYKCQCEEGFQLD 365
>pdb|2W2N|E Chain E, Wt Pcsk9-Deltac Bound To Egf-A H306y Mutant Of Ldlr
Length = 107
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 6/58 (10%)
Query: 267 GYHCKCNEGYEGNPYLSDGCQDVNECEDPSLNNCTRTHICDNIPGSYTCRCRKGFHGD 324
GY C C +G++ C+D++EC+DP T + +C N+ G Y C+C +GF D
Sbjct: 49 GYECLCPDGFQ--LVAQRRCEDIDECQDPD----TCSQLCVNLEGGYKCQCEEGFQLD 100
>pdb|2W2M|E Chain E, Wt Pcsk9-Deltac Bound To Wt Egf-A Of Ldlr
pdb|2W2O|E Chain E, Pcsk9-deltac D374y Mutant Bound To Wt Egf-a Of Ldlr
pdb|2W2P|E Chain E, Pcsk9-Deltac D374a Mutant Bound To Wt Egf-A Of Ldlr
pdb|2W2Q|E Chain E, Pcsk9-Deltac D374h Mutant Bound To Wt Egf-A Of Ldlr
Length = 107
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 6/58 (10%)
Query: 267 GYHCKCNEGYEGNPYLSDGCQDVNECEDPSLNNCTRTHICDNIPGSYTCRCRKGFHGD 324
GY C C +G++ C+D++EC+DP T + +C N+ G Y C+C +GF D
Sbjct: 49 GYECLCPDGFQ--LVAQRRCEDIDECQDPD----TCSQLCVNLEGGYKCQCEEGFQLD 100
>pdb|1HZ8|A Chain A, Solution Structure And Backbone Dynamics Of A Concatemer
Of Egf-Homology Modules Of The Human Low Density
Lipoprotein Receptor
pdb|1I0U|A Chain A, Solution Structure And Backbone Dynamics Of A Concatemer
Of Egf-Homology Modules Of The Human Low Density
Lipoprotein Receptor
Length = 82
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 6/58 (10%)
Query: 267 GYHCKCNEGYEGNPYLSDGCQDVNECEDPSLNNCTRTHICDNIPGSYTCRCRKGFHGD 324
GY C C +G++ C+D++EC+DP T + +C N+ G Y C+C +GF D
Sbjct: 22 GYECLCPDGFQ--LVAQRRCEDIDECQDPD----TCSQLCVNLEGGYKCQCEEGFQLD 73
>pdb|3GCW|E Chain E, Pcsk9:egfa(H306y)
Length = 83
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 6/58 (10%)
Query: 267 GYHCKCNEGYEGNPYLSDGCQDVNECEDPSLNNCTRTHICDNIPGSYTCRCRKGFHGD 324
GY C C +G++ C+D++EC+DP T + +C N+ G Y C+C +GF D
Sbjct: 25 GYECLCPDGFQ--LVAQRRCEDIDECQDPD----TCSQLCVNLEGGYKCQCEEGFQLD 76
>pdb|3BPS|E Chain E, Pcsk9:egf-a Complex
pdb|3GCX|E Chain E, Pcsk9:egfa (Ph 7.4)
Length = 83
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 6/58 (10%)
Query: 267 GYHCKCNEGYEGNPYLSDGCQDVNECEDPSLNNCTRTHICDNIPGSYTCRCRKGFHGD 324
GY C C +G++ C+D++EC+DP T + +C N+ G Y C+C +GF D
Sbjct: 25 GYECLCPDGFQ--LVAQRRCEDIDECQDPD----TCSQLCVNLEGGYKCQCEEGFQLD 76
>pdb|1HJ7|A Chain A, Nmr Study Of A Pair Of Ldl Receptor Ca2+ Binding Epidermal
Growth Factor-Like Domains, 20 Structures
Length = 80
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 6/58 (10%)
Query: 267 GYHCKCNEGYEGNPYLSDGCQDVNECEDPSLNNCTRTHICDNIPGSYTCRCRKGFHGD 324
GY C C +G++ C+D++EC+DP T + +C N+ G Y C+C +GF D
Sbjct: 22 GYECLCPDGFQ--LVAQRRCEDIDECQDPD----TCSQLCVNLEGGYKCQCEEGFQLD 73
>pdb|1Z6C|A Chain A, Solution Structure Of An Egf Pair (Egf34) From Vitamin K-
Dependent Protein S
Length = 87
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 33/57 (57%), Gaps = 8/57 (14%)
Query: 268 YHCKCNEGYEGNPYLSDGCQDVNECEDPSLNNCTRTHICDNIPGSYTCRC--RKGFH 322
+ C+C EGY N S C+D++EC S N C + +C N PG YTC C +KGF
Sbjct: 25 FECECPEGYRYN-LKSKSCEDIDEC---SENMCAQ--LCVNYPGGYTCYCDGKKGFK 75
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Query: 287 QDVNECE-DPSLNNCTRTHICDNIPGSYTCRCRKGFH 322
+DV+EC PS+ T +C NIPG + C C +G+
Sbjct: 1 KDVDECSLKPSI---CGTAVCKNIPGDFECECPEGYR 34
>pdb|3H5C|B Chain B, X-Ray Structure Of Protein Z-Protein Z Inhibitor Complex
Length = 317
Score = 35.0 bits (79), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 14/79 (17%)
Query: 267 GYHCKCNEGYEGNPYLSDGCQDV-NECEDPSLNNCTRTHICDNIPG--SYTCRCRKGFHG 323
GY C C+ GYEG+ C+ NEC + C H C +PG SYTC C +G+
Sbjct: 25 GYTCTCSPGYEGS-----NCELAKNECHPERTDGC--QHFC--LPGQESYTCSCAQGYRL 75
Query: 324 DGTKDGRGCIPNQNTALKV 342
+D + C+P+ A V
Sbjct: 76 G--EDHKQCVPHDQCACGV 92
>pdb|3V65|B Chain B, Crystal Structure Of Agrin And Lrp4 Complex
pdb|3V65|D Chain D, Crystal Structure Of Agrin And Lrp4 Complex
Length = 386
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 9/55 (16%)
Query: 269 HCKCNEGYEGNPYLSDG--CQDVNECEDPSLNNCTRTHICDNIPGSYTCRCRKGF 321
C C+ GY DG CQDVNEC + C++ C N G++ C C G+
Sbjct: 25 QCTCHTGYR---LTEDGRTCQDVNECAEEGY--CSQG--CTNSEGAFQCWCEAGY 72
>pdb|1O9V|A Chain A, F17-Ag Lectin Domain From Escherichia Coli In Complex With
A Selenium Carbohydrate Derivative
pdb|1O9W|A Chain A, F17-Ag Lectin Domain From Escherichia Coli In Complex With
N-Acetyl-Glucosamine
pdb|1ZPL|A Chain A, E. Coli F17a-G Lectin Domain Complex With
Glcnac(Beta1-O)me
pdb|1ZPL|B Chain B, E. Coli F17a-G Lectin Domain Complex With
Glcnac(Beta1-O)me
pdb|2BSC|A Chain A, E. Coli F17a-G Lectin Domain Complex With N-
Acetylglucosamine, High-Resolution Structure
pdb|3F64|A Chain A, F17a-G Lectin Domain With Bound Glcnac(Beta1-O)
Paranitrophenyl Ligand
pdb|3F6J|A Chain A, F17a-G Lectin Domain With Bound Glcnac(Beta1-3)gal
Length = 177
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 295 PSLNNCTRTHICDNIPGSYTCRCRKGFH 322
PSL + +RTH DN+P Y R + G+
Sbjct: 14 PSLGSYSRTHAMDNLPFVYDTRNKIGYQ 41
>pdb|1O9Z|A Chain A, F17-Ag Lectin Domain From Escherichia Coli (Ligand Free)
Length = 177
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 295 PSLNNCTRTHICDNIPGSYTCRCRKGFH 322
PSL + +RTH DN+P Y R + G+
Sbjct: 14 PSLGSYSRTHAMDNLPFVYDTRNKIGYQ 41
>pdb|1DX5|I Chain I, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|J Chain J, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|K Chain K, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|L Chain L, Crystal Structure Of The Thrombin-Thrombomodulin Complex
Length = 118
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 53/124 (42%), Gaps = 22/124 (17%)
Query: 196 VSPFNPCTYASVVDKSQFHFSSNYLAWEGTPEKFPLVLDWEITTKETCEEAKICGLNASC 255
V P +PC A+ + Q ++YL E F + + C + +C
Sbjct: 1 VEPVDPCFRANCEYQCQPLDQTSYLCV--CAEGFAPIPHEPHRCQMFCNQT-------AC 51
Query: 256 HKPKDNTTTSSGYHCKCNEGYEGNPYLSDG--CQDVNECEDPSLNNCTRTHICDNIPGSY 313
D T +S C+C EGY L DG C D++ECE+ + +C N+PG++
Sbjct: 52 PADCDPNTQAS---CECPEGY----ILDDGFICTDIDECENGGFC----SGVCHNLPGTF 100
Query: 314 TCRC 317
C C
Sbjct: 101 ECIC 104
>pdb|3GIS|X Chain X, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
pdb|3GIS|Y Chain Y, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
pdb|3GIS|Z Chain Z, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
Length = 121
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 10/50 (20%)
Query: 270 CKCNEGYEGNPYLSDG--CQDVNECEDPSLNNCTRTHICDNIPGSYTCRC 317
C+C EGY L DG C D++ECE+ + +C N+PG++ C C
Sbjct: 63 CECPEGY----ILDDGFICTDIDECENGGF----CSGVCHNLPGTFECIC 104
>pdb|3HFQ|A Chain A, Crystal Structure Of The Lp_2219 Protein From
Lactobacillus Plantarum. Northeast Structural Genomics
Consortium Target Lpr118.
pdb|3HFQ|B Chain B, Crystal Structure Of The Lp_2219 Protein From
Lactobacillus Plantarum. Northeast Structural Genomics
Consortium Target Lpr118
Length = 347
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 194 TNVSPFNPCTYASVVDKSQFHFSSNYLAWEGTPEKFPLVLDWEITTKETCEEA 246
T V+P P Y +V + Q +S+NY +GT E + D +T +T + +
Sbjct: 80 TVVAPGTPPAYVAVDEARQLVYSANY--HKGTAEVXKIAADGALTLTDTVQHS 130
>pdb|3DEM|A Chain A, Cub1-egf-cub2 Domain Of Human Masp-1/3
pdb|3DEM|B Chain B, Cub1-egf-cub2 Domain Of Human Masp-1/3
Length = 278
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 288 DVNECEDPSLNNCTRTHICDNIPGSYTCRCRKGF 321
DV+EC++ + H C N G Y C CR G+
Sbjct: 120 DVDECKEREDEELSCDHYCHNYIGGYYCSCRFGY 153
>pdb|1UZJ|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZJ|B Chain B, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZJ|C Chain C, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZP|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Sm Bound Form Cbegf23 Domain Only.
pdb|1UZQ|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Apo Form Cbegf23 Domain Only
Length = 162
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 288 DVNECEDPSLNNCTRTHICDNIPGSYTCRCRKGFHGDGTKDG 329
DVNEC DP+ C + C N PGSY C C F + T+ G
Sbjct: 2 DVNECLDPT--TCISGN-CVNTPGSYICDCPPDFELNPTRVG 40
>pdb|4AQB|A Chain A, Mbl-Ficolin Associated Protein-1, Map-1 Aka Map44
Length = 361
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 288 DVNECEDPSLNNCTRTHICDNIPGSYTCRCRKGF 321
DV+EC++ + H C N G Y C CR G+
Sbjct: 120 DVDECKEREDEELSCDHYCHNYIGGYYCSCRFGY 153
>pdb|1UZK|A Chain A, Integrin Binding Cbegf22-tb4-cbegf33 Fragment Of Human
Fibrillin-1, Ca Bound To Cbegf23 Domain Only
Length = 162
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 288 DVNECEDPSLNNCTRTHICDNIPGSYTCRCRKGFHGDGTKDG 329
DVNEC DP+ C + C N PGSY C C F + T+ G
Sbjct: 2 DVNECLDPT--TCISGN-CVNTPGSYICDCPPDFELNPTRVG 40
>pdb|4D90|A Chain A, Crystal Structure Of Del-1 Egf Domains
pdb|4D90|B Chain B, Crystal Structure Of Del-1 Egf Domains
Length = 143
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 9/58 (15%)
Query: 267 GYHCKCNEGYEGNPYLSDGCQ-DVNECEDPSLNNCTRTHICDNIPGSYTCRCRKGFHG 323
GY CKC G+ G CQ ++NECE + C IC ++ +Y+C C F G
Sbjct: 79 GYVCKCPRGFNG-----IHCQHNINECE---VEPCKNGGICTDLVANYSCECPGEFMG 128
>pdb|2Z39|A Chain A, Crystal Structure Of Brassica Juncea Chitinase Catalytic
Module Glu234ala Mutant (bjchi3-e234a)
pdb|2Z39|B Chain B, Crystal Structure Of Brassica Juncea Chitinase Catalytic
Module Glu234ala Mutant (bjchi3-e234a)
Length = 246
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 5/37 (13%)
Query: 204 YASVVDKSQFHFSSNYLAWEGTPEKF-----PLVLDW 235
Y +DKS H SN L W P KF P++L W
Sbjct: 88 YKEAIDKSDPHCDSNNLEWPCAPGKFYYGRGPMMLSW 124
>pdb|3HW9|A Chain A, Cation Selective Pathway Of Ompf Porin Revealed By
Anomalous X-Ray Diffraction
pdb|3HW9|B Chain B, Cation Selective Pathway Of Ompf Porin Revealed By
Anomalous X-Ray Diffraction
pdb|3HWB|A Chain A, Cation Selective Pathway Of Ompf Porin Revealed By
Anomalous Diffraction
pdb|3HWB|B Chain B, Cation Selective Pathway Of Ompf Porin Revealed By
Anomalous Diffraction
Length = 362
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 6/106 (5%)
Query: 96 AKECYRK-GNSVDSYSPTFSLSKFTVSNTENRFVVIGCDSYAYVRGYLGENRYRAGCMSM 154
A E Y K GN VD Y L F+ N EN + G +YA + G+ GE + +
Sbjct: 22 AAEIYNKDGNKVDLYGKAVGLHYFSKGNGENSYGGNGDMTYARL-GFKGETQINSDLTGY 80
Query: 155 CD-SFDFVTN---GSCVGTGCCQIEIPRGLKELEVEAFSFNNHTNV 196
++F N G+ TG GLK +V +F + + V
Sbjct: 81 GQWEYNFQGNNSEGADAQTGNKTRLAFAGLKYADVGSFDYGRNYGV 126
>pdb|1EMN|A Chain A, Nmr Study Of A Pair Of Fibrillin Ca2+ Binding Epidermal
Growth Factor-Like Domains, Minimized Average Structure
pdb|1EMO|A Chain A, Nmr Study Of A Pair Of Fibrillin Ca2+ Binding Epidermal
Growth Factor-Like Domains, 22 Structures
Length = 82
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Query: 264 TSSGYHCKCNEGYEGNPYLSDGCQDVNECEDPSLNNCTRTHICDNIPGSYTCRCRKGFH 322
T Y C+C GY + C D +EC S+ N C N+ G + C C +GF
Sbjct: 22 TDGSYRCECPFGY---ILAGNECVDTDEC---SVGNPCGNGTCKNVIGGFECTCEEGFE 74
>pdb|4FHN|B Chain B, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
pdb|4FHN|D Chain D, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
Length = 1139
Score = 28.5 bits (62), Expect = 5.3, Method: Composition-based stats.
Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 6/83 (7%)
Query: 53 LNKYFVITCNKTHYNPPKP-----FLRKSNIEVVNITIDGRMNVMQFVAKECYRKGNSVD 107
L KY + K Y P FL N+ +V +++D ++ V+ +C
Sbjct: 221 LKKYLSLQAFKADYRSPNTIISMIFLSTYNV-LVMLSLDYKLKVLDLSTNQCVETIELSQ 279
Query: 108 SYSPTFSLSKFTVSNTENRFVVI 130
+ P S T +T N F+ +
Sbjct: 280 TILPLQSFPYLTSDHTTNSFIAL 302
>pdb|1BT9|A Chain A, Ompf Porin Mutant D74a
Length = 340
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 44/104 (42%), Gaps = 6/104 (5%)
Query: 98 ECYRK-GNSVDSYSPTFSLSKFTVSNTENRFVVIGCDSYAYVRGYLGENRYRAGCMSMCD 156
E Y K GN VD Y L F+ N EN + G +YA + G+ GE + +
Sbjct: 2 EIYNKDGNKVDLYGKAVGLHYFSKGNGENSYGGNGDMTYARL-GFKGETQINSDLTGYGQ 60
Query: 157 -SFDFVTN---GSCVGTGCCQIEIPRGLKELEVEAFSFNNHTNV 196
++F N G+ TG GLK +V +F + + V
Sbjct: 61 WEYNFQGNNSEGAAAQTGNKTRLAFAGLKYADVGSFDYGRNYGV 104
>pdb|1Z27|A Chain A, Crystal Structure Of Native Pvs25, An Ookinete Protein
From Plasmodium Vivax.
pdb|1Z3G|A Chain A, Crystal Structure Of Complex Between Pvs25 And Fab
Fragment Of Malaria Transmission Blocking Antibody 2a8
pdb|1Z3G|B Chain B, Crystal Structure Of Complex Between Pvs25 And Fab
Fragment Of Malaria Transmission Blocking Antibody 2a8
Length = 186
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 301 TRTHICDNIPGSYTCRCRKGFHGDGTKD 328
T +C N+ G Y C+C +GF D K+
Sbjct: 148 TDNEVCKNVEGVYKCQCMEGFTFDKEKN 175
>pdb|1HXX|A Chain A, Ompf Porin Mutant Y106f
Length = 340
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 49/116 (42%), Gaps = 7/116 (6%)
Query: 98 ECYRK-GNSVDSYSPTFSLSKFTVSNTENRFVVIGCDSYAYVRGYLGENRYRAGCMSMCD 156
E Y K GN VD Y L F+ N EN + G +YA + G+ GE + +
Sbjct: 2 EIYNKDGNKVDLYGKAVGLHYFSKGNGENSYGGNGDMTYARL-GFKGETQINSDLTGYGQ 60
Query: 157 -SFDFVTN---GSCVGTGCCQIEIPRGLKELEVEAFSFNNHTNVSPFNPCTYASVV 208
++F N G+ TG GLK +V +F + + V F+ Y ++
Sbjct: 61 WEYNFQGNNSEGADAQTGNKTRLAFAGLKYADVGSFDYGRNYGV-VFDALGYTDML 115
>pdb|1HXT|A Chain A, Ompf Porin Mutant Nqaaa
Length = 340
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 43/104 (41%), Gaps = 6/104 (5%)
Query: 98 ECYRK-GNSVDSYSPTFSLSKFTVSNTENRFVVIGCDSYAYVRGYLGENRYRAGCMSMCD 156
E Y K GN VD Y L F+ N EN + G +YA G+ GE + +
Sbjct: 2 EIYNKDGNKVDLYGKAVGLHYFSKGNGENSYGGNGDMTYA-ALGFKGETQINSDLTGYGQ 60
Query: 157 -SFDFVTN---GSCVGTGCCQIEIPRGLKELEVEAFSFNNHTNV 196
++F N G+ TG GLK +V +F + + V
Sbjct: 61 WEYNFQGNNSEGADAQTGNKTALAFAGLKYADVGSFDYGRNYGV 104
>pdb|3EOZ|A Chain A, Crystal Structure Of Phosphoglycerate Mutase From
Plasmodium Falciparum, Pfd0660w
pdb|3EOZ|B Chain B, Crystal Structure Of Phosphoglycerate Mutase From
Plasmodium Falciparum, Pfd0660w
Length = 214
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 27/66 (40%), Gaps = 8/66 (12%)
Query: 239 TKETCEEAKICGLNASCHKPKD---NTTTSSGYHCKCNEGYEGNPYLSDGCQDVNECEDP 295
TKE C++A I G K KD N S YH E +S D N DP
Sbjct: 46 TKEGCKQADITG-----KKLKDILNNKKVSVIYHSDXIRAKETANIISKYFPDANLINDP 100
Query: 296 SLNNCT 301
+LN T
Sbjct: 101 NLNEGT 106
>pdb|2W86|A Chain A, Crystal Structure Of Fibrillin-1 Domains
Cbegf9hyb2cbegf10, Calcium Saturated Form
Length = 147
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 286 CQDVNECEDPSLNNCTRTHICDNIPGSYTCRCRKGFHGDGTKDGRGCI 333
C+D++ECE + +C N GS+ C+C G D T GR C+
Sbjct: 104 CEDIDECE--VFPGVCKNGLCVNTRGSFKCQCPSGMTLDAT--GRICL 147
>pdb|4FHM|B Chain B, Nup37-Nup120(Aa1-961) Complex From Schizosaccharomyces
Pombe
Length = 964
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 6/83 (7%)
Query: 53 LNKYFVITCNKTHYNPPKP-----FLRKSNIEVVNITIDGRMNVMQFVAKECYRKGNSVD 107
L KY + K Y P FL N+ +V +++D ++ V+ +C
Sbjct: 221 LKKYLSLQAFKADYRSPNTIISMIFLSTYNV-LVMLSLDYKLKVLDLSTNQCVETIELSQ 279
Query: 108 SYSPTFSLSKFTVSNTENRFVVI 130
+ P S T +T N F+ +
Sbjct: 280 TILPLQSFPYLTSDHTTNSFIAL 302
>pdb|4GQ2|M Chain M, S. Pombe Nup120-Nup37 Complex
Length = 950
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 6/83 (7%)
Query: 53 LNKYFVITCNKTHYNPPKP-----FLRKSNIEVVNITIDGRMNVMQFVAKECYRKGNSVD 107
L KY + K Y P FL N+ +V +++D ++ V+ +C
Sbjct: 219 LKKYLSLQAFKADYRSPNTIISMIFLSTYNV-LVMLSLDYKLKVLDLSTNQCVETIELSQ 277
Query: 108 SYSPTFSLSKFTVSNTENRFVVI 130
+ P S T +T N F+ +
Sbjct: 278 TILPLQSFPYLTSDHTTNSFIAL 300
>pdb|2Z38|A Chain A, Crystal Structure Of Chloride Bound Brassica Juncea
Chitinase Catalytic Module (Bjchi3)
Length = 247
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 5/37 (13%)
Query: 204 YASVVDKSQFHFSSNYLAWEGTPEKF-----PLVLDW 235
Y +DKS H SN L W P KF P++L W
Sbjct: 89 YKEEIDKSDPHCDSNNLEWPCAPGKFYYGRGPMMLSW 125
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.450
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,175,424
Number of Sequences: 62578
Number of extensions: 495827
Number of successful extensions: 1079
Number of sequences better than 100.0: 94
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 67
Number of HSP's that attempted gapping in prelim test: 951
Number of HSP's gapped (non-prelim): 158
length of query: 346
length of database: 14,973,337
effective HSP length: 100
effective length of query: 246
effective length of database: 8,715,537
effective search space: 2144022102
effective search space used: 2144022102
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)