BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044786
(340 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|388491128|gb|AFK33630.1| unknown [Lotus japonicus]
Length = 356
Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust.
Identities = 191/340 (56%), Positives = 243/340 (71%), Gaps = 4/340 (1%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCG 60
MD L PI D+YT LIKECT D A EL HI IKP L F+NR+L+M VSCG
Sbjct: 21 MDVLPFPIPIDIYTSLIKECTLSPDPQTAIELHTHI-AHSGIKPPLSFINRILVMFVSCG 79
Query: 61 QLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWII 120
LD A QLFD MP++DFNSWA + + Y D ADY+E I +F M+ + + FP WI
Sbjct: 80 LLDYACQLFDAMPVKDFNSWATLFIAYYDNADYEEAIDVFLAMLHQLG---MSEFPPWIC 136
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
C LKAC C N+ LG QVHG L KLG+ ++ L+ SLI FYG+F C++DA+ VF++L R
Sbjct: 137 ACFLKACACIENIPLGMQVHGWLLKLGTCDHVLLSSSLIRFYGRFTCVKDANAVFNKLSR 196
Query: 181 HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQ 240
HNT WTAKIV+ CRE F +VFNDFKEMGR+ IKK++YTFSSVLKACG + D G CG Q
Sbjct: 197 HNTSTWTAKIVSGCREMDFPEVFNDFKEMGRQGIKKDTYTFSSVLKACGKMMDHGRCGEQ 256
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
+HA+ +K+GL SD YVQC L+ MYG+ LLRDA++VFE ++N+ SWNAML+GY+ NG
Sbjct: 257 VHADAMKLGLASDNYVQCSLIAMYGRSGLLRDAKQVFETSRSERNVDSWNAMLMGYLENG 316
Query: 301 LYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKIN 340
LY+EA KFLY MKA+G++ ESL++ +RIAC S++ S N
Sbjct: 317 LYIEAVKFLYQMKAAGLKPHESLLDKVRIACGSVTYSSTN 356
>gi|356495285|ref|XP_003516509.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31790-like [Glycine max]
Length = 423
Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust.
Identities = 185/340 (54%), Positives = 243/340 (71%), Gaps = 4/340 (1%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCG 60
M+ L P+ D+YT LIKECT D A EL HI K IKP L FLNR+L+M VSCG
Sbjct: 88 MEALPFPVPIDIYTSLIKECTVSGDPETAIELATHISKS-GIKPPLPFLNRILVMFVSCG 146
Query: 61 QLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWII 120
L+ AR +FD+M +RDFN+WA + V Y D DY+E +F M+ + ++ FP WI
Sbjct: 147 LLENARHMFDKMRVRDFNTWATLFVAYYDNTDYEEATNVFVNMLTQLG---MMEFPPWIW 203
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
C+L+AC CT+N+ LG QVHG L KLG+ ++ L+ SLINFYG+F CLEDA VF + R
Sbjct: 204 ACLLRACACTVNVPLGMQVHGWLLKLGTCDHVLLSSSLINFYGRFTCLEDASVVFDGVSR 263
Query: 181 HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQ 240
HNT+ WTAKIV+ CRE HF +VF+DFKEMG +KK+ +TFSSVLKACG + + CG Q
Sbjct: 264 HNTLTWTAKIVSGCRERHFSEVFDDFKEMGMRGVKKDCFTFSSVLKACGRMLNQERCGEQ 323
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
+H + +K+GL SD YVQC L+ MYG+C LL DA+RVFE+ +++ + WNAML+GYI+NG
Sbjct: 324 VHVDAIKLGLVSDHYVQCSLIAMYGRCGLLEDAKRVFEMSQEERKVDCWNAMLMGYIQNG 383
Query: 301 LYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKIN 340
LY+EA KFLY M+A+G+Q +ESL+ LR+AC SIS S +N
Sbjct: 384 LYIEAVKFLYQMQAAGMQPRESLLKKLRMACGSISYSNMN 423
>gi|359474747|ref|XP_003631528.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31790-like [Vitis vinifera]
Length = 414
Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 191/339 (56%), Positives = 243/339 (71%), Gaps = 6/339 (1%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCG 60
MD L LPI D+Y LIKE + D+ A +LL HI R + + LNR+LLM+VSCG
Sbjct: 68 MDGLGLPIPPDIYASLIKESSTTGDATQATQLLAHI-NRSGLPLSSALLNRILLMYVSCG 126
Query: 61 QLDTARQLFDEMPLRDFNS--WAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAW 118
+ TAR +FD+M + + NS WA+M+ Y+D Y+E I LF +MM+ ++L PAW
Sbjct: 127 LIHTARHMFDKMNVLNKNSISWAIMLAAYMDNGFYEEAIFLFVQMMELHST-IMLELPAW 185
Query: 119 IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL 178
I +CVLKACV TMN+ LGKQVHG L K+G + N+ L+ LI+FYGKFRCL+DADFVF Q
Sbjct: 186 IFICVLKACVHTMNLTLGKQVHGWLLKVGYATNLFLSCYLISFYGKFRCLDDADFVFDQT 245
Query: 179 KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCG 238
NTV+WTAK+VN C+ + H+ F EMGR +K+N +T+SSVL+ACG + D G CG
Sbjct: 246 SERNTVIWTAKMVNKCQGEYMHEALVAFTEMGRAGVKRNEFTYSSVLRACGRMKDHGRCG 305
Query: 239 RQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD--KKNIASWNAMLVGY 296
R +HA+ +K+GLESD YVQCGLVDMYGKC LL +A RVFE + D K NI WNAML GY
Sbjct: 306 RLIHASTIKLGLESDIYVQCGLVDMYGKCGLLVEARRVFETVSDTNKTNIVCWNAMLTGY 365
Query: 297 IRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
IR+GLY+EA KFLY MKA+GIQ QESL+N+LRIAC S +
Sbjct: 366 IRHGLYIEAIKFLYQMKAAGIQPQESLLNELRIACGSTT 404
>gi|357484339|ref|XP_003612457.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513792|gb|AES95415.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 418
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 182/340 (53%), Positives = 244/340 (71%), Gaps = 2/340 (0%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCG 60
MD L PIT D+YT L+KECT D A EL I R I+ L LNR+L+M VSCG
Sbjct: 81 MDALHFPITIDIYTSLVKECTLSTDPETAIELHTQIITR-GIELPLTLLNRILIMFVSCG 139
Query: 61 QLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWII 120
L+ AR++FD M +RDF+SWA + V Y + +Y+ I +F M+ + M FP WI
Sbjct: 140 LLENARRVFDVMSVRDFHSWATLFVSYYENGEYENAIDVFVSMLCQLDV-MGFSFPPWIW 198
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
C+LKAC CTMN+ LG QVHG L KLG+ ++ ++ SLI FYG+F+CLEDA+ VF+++ R
Sbjct: 199 SCLLKACACTMNVPLGMQVHGCLLKLGACDHVLISSSLIRFYGRFKCLEDANMVFNRVSR 258
Query: 181 HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQ 240
HNT+ WTAKIV++CRE HF + DFK+MGR +KK+S+TFSSVLKACG + + G+CG Q
Sbjct: 259 HNTLTWTAKIVSSCRERHFSEALGDFKKMGRVGVKKDSFTFSSVLKACGRMQNRGSCGEQ 318
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
+HA+ +K+GL+SD YVQC L+ MYG+ LLRDAE VFE+ +++N+ S NAML+GYI+NG
Sbjct: 319 VHADAIKLGLDSDSYVQCSLIAMYGRSGLLRDAELVFEMTRNERNVDSLNAMLMGYIQNG 378
Query: 301 LYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKIN 340
LY+EA KF+Y MKA+G+Q E L+ LRIAC S + S +N
Sbjct: 379 LYIEAVKFVYQMKAAGVQPHEPLLEKLRIACGSSNFSSMN 418
>gi|255557831|ref|XP_002519945.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540991|gb|EEF42549.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 403
Score = 359 bits (922), Expect = 9e-97, Method: Compositional matrix adjust.
Identities = 180/338 (53%), Positives = 245/338 (72%), Gaps = 5/338 (1%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCG 60
MD+LC PI D+YT LIKECT DS A L +H+ + N+K T ++RLLLMHVSCG
Sbjct: 64 MDSLCHPIPPDIYTSLIKECTLTSDSTEALCLHSHLISQTNLKLTPPLVHRLLLMHVSCG 123
Query: 61 QLDTARQLFDEMPLR-DFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP--A 117
QLD AR LFD+MPL+ DF SW ++IVG + Y+ I LF +M+ + + L+F
Sbjct: 124 QLDIARNLFDKMPLKKDFISWVIVIVGCFSNSKYEAGINLFIDMLLQHSVYDGLMFDLNT 183
Query: 118 W--IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVF 175
W II+C++K C+ +MN+ LGKQVHG+LFK+G + IS SL++FYGK CLED + VF
Sbjct: 184 WNIIILCIIKCCIYSMNISLGKQVHGILFKVGLTSEISFNVSLMDFYGKLGCLEDVNSVF 243
Query: 176 SQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDG 235
++L HNT WTAKIVN+CR F++V DFKEMG IK+NS+T SSVL+AC + D G
Sbjct: 244 NKLDNHNTATWTAKIVNSCRNQRFYEVIEDFKEMGEAGIKRNSFTVSSVLRACARMGDGG 303
Query: 236 NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
NCG+Q+H ++K+GLESD +VQCGL+ MYGKC ++R A++VFEL++DK N A WNA+L+
Sbjct: 304 NCGKQVHVIVIKLGLESDAFVQCGLIAMYGKCGMIRKAKKVFELVIDKTNTACWNALLMA 363
Query: 296 YIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSS 333
Y+RN L++EA K LY M+A+ IQ+ ESL++ +RIAC +
Sbjct: 364 YVRNELFIEAMKLLYQMEAAKIQVNESLLDHVRIACGT 401
>gi|15222460|ref|NP_174459.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169166|sp|Q9C6R9.1|PPR66_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g31790
gi|12321298|gb|AAG50719.1|AC079041_12 hypothetical protein [Arabidopsis thaliana]
gi|111074348|gb|ABH04547.1| At1g31790 [Arabidopsis thaliana]
gi|332193272|gb|AEE31393.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 409
Score = 347 bits (889), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 166/331 (50%), Positives = 227/331 (68%), Gaps = 4/331 (1%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCG 60
MD+L LP D+Y+CL KE + D GA EL HI K +I+PT+ F+NRLLLMHVSCG
Sbjct: 79 MDSLSLPGNEDIYSCLAKESARENDQRGAHELQVHIMKS-SIRPTITFINRLLLMHVSCG 137
Query: 61 QLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWII 120
+LD RQ+FD MP RDF+SWA++ +G +++ DY++ LF M+K + + P+WI+
Sbjct: 138 RLDITRQMFDRMPHRDFHSWAIVFLGCIEMGDYEDAAFLFVSMLKHSQKGAFKI-PSWIL 196
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLG--SSRNISLTGSLINFYGKFRCLEDADFVFSQL 178
CVLKAC + ELGKQVH L KLG + L+GSLI FYG+FRCLEDA+ V QL
Sbjct: 197 GCVLKACAMIRDFELGKQVHALCHKLGFIDEEDSYLSGSLIRFYGEFRCLEDANLVLHQL 256
Query: 179 KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCG 238
NTV W AK+ N+ REG F +V DF EMG IKKN FS+VLKAC V D G G
Sbjct: 257 SNANTVAWAAKVTNDYREGEFQEVIRDFIEMGNHGIKKNVSVFSNVLKACSWVSDGGRSG 316
Query: 239 RQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIR 298
+Q+HAN +K+G ESD ++C L++MYGK ++DAE+VF+ D+ +++ WNAM+ Y++
Sbjct: 317 QQVHANAIKLGFESDCLIRCRLIEMYGKYGKVKDAEKVFKSSKDETSVSCWNAMVASYMQ 376
Query: 299 NGLYVEATKFLYLMKASGIQIQESLINDLRI 329
NG+Y+EA K LY MKA+GI+ ++L+N+ +
Sbjct: 377 NGIYIEAIKLLYQMKATGIKAHDTLLNEAHL 407
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 61/132 (46%), Gaps = 4/132 (3%)
Query: 206 FKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGL--ESDEYVQCGLVDM 263
K + K S+ VLKAC + D G+Q+HA K+G E D Y+ L+
Sbjct: 181 LKHSQKGAFKIPSWILGCVLKACAMIRD-FELGKQVHALCHKLGFIDEEDSYLSGSLIRF 239
Query: 264 YGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESL 323
YG+ R L DA V + + +A W A + R G + E + M GI+ S+
Sbjct: 240 YGEFRCLEDANLVLHQLSNANTVA-WAAKVTNDYREGEFQEVIRDFIEMGNHGIKKNVSV 298
Query: 324 INDLRIACSSIS 335
+++ ACS +S
Sbjct: 299 FSNVLKACSWVS 310
>gi|297851610|ref|XP_002893686.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297339528|gb|EFH69945.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 410
Score = 345 bits (884), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 166/328 (50%), Positives = 224/328 (68%), Gaps = 3/328 (0%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCG 60
MD+L LP D+Y+CL KE + D GA+EL HI K +PT F+NRLLLMHVSCG
Sbjct: 79 MDSLSLPGNEDLYSCLAKESARENDRRGAYELQVHIMKSSIRRPTTTFVNRLLLMHVSCG 138
Query: 61 QLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWII 120
+LD R +FD+MP RDF+SWA++ +G +++ DY++ LF M+K + + P+WI+
Sbjct: 139 RLDITRHMFDKMPHRDFHSWAIVFLGCIEMGDYEDAALLFVSMLKHSQNGAFKI-PSWIM 197
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLG--SSRNISLTGSLINFYGKFRCLEDADFVFSQL 178
CVLKAC + ELGKQVH L KLG + L+GSLI FYG+FRCLEDA+ V QL
Sbjct: 198 GCVLKACAMIRDFELGKQVHALCHKLGCIDEEDSYLSGSLIRFYGEFRCLEDANLVLHQL 257
Query: 179 KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCG 238
NTV W AK+ N+ REG F +V DF EMG RI+KN FS+VLKAC V D G G
Sbjct: 258 SNANTVAWAAKVTNDYREGEFQEVIRDFIEMGNHRIRKNVSVFSNVLKACTWVSDGGRSG 317
Query: 239 RQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIR 298
+Q+HA +K+G ESD ++C L++MYGK ++DAE+VF+ D+ N+ WNAM+ GY++
Sbjct: 318 KQVHAVAIKLGFESDCLIRCRLIEMYGKYGKVKDAEKVFKSSKDETNVNCWNAMVAGYMQ 377
Query: 299 NGLYVEATKFLYLMKASGIQIQESLIND 326
NG+YVEA K L MKA+GI+ Q++L+N+
Sbjct: 378 NGIYVEAIKLLCQMKATGIKAQDTLLNE 405
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 58/123 (47%), Gaps = 4/123 (3%)
Query: 215 KKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGL--ESDEYVQCGLVDMYGKCRLLRD 272
K S+ VLKAC + D G+Q+HA K+G E D Y+ L+ YG+ R L D
Sbjct: 191 KIPSWIMGCVLKACAMIRD-FELGKQVHALCHKLGCIDEEDSYLSGSLIRFYGEFRCLED 249
Query: 273 AERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
A V + + +A W A + R G + E + M I+ S+ +++ AC+
Sbjct: 250 ANLVLHQLSNANTVA-WAAKVTNDYREGEFQEVIRDFIEMGNHRIRKNVSVFSNVLKACT 308
Query: 333 SIS 335
+S
Sbjct: 309 WVS 311
>gi|147771530|emb|CAN69066.1| hypothetical protein VITISV_016070 [Vitis vinifera]
Length = 543
Score = 325 bits (833), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 171/339 (50%), Positives = 217/339 (64%), Gaps = 40/339 (11%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCG 60
MD L LPI D+Y LIKE + D+ A +LL HI R + + LNR+LLM+VSCG
Sbjct: 231 MDGLGLPIPPDIYASLIKESSTTGDATQATQLLAHI-NRSGLPLSSALLNRILLMYVSCG 289
Query: 61 QLDTARQLFDEMPLRDFNS--WAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAW 118
+ TAR +FD+M + + NS WA+M+ Y+D Y+E I LF +MM+ ++L PAW
Sbjct: 290 LIHTARHMFDKMNVLNKNSISWAIMLAAYMDNGFYEEAIFLFVQMMELHS-TIMLELPAW 348
Query: 119 IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL 178
I +CVLKACV TMN+ LGKQVHG L
Sbjct: 349 IFICVLKACVHTMNLTLGKQVHGWL----------------------------------T 374
Query: 179 KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCG 238
K NTV+WTAK+VN C+ + H+ F EMGR +K+N +T+SSVL+ACG + D G CG
Sbjct: 375 KERNTVIWTAKMVNKCQGEYMHEALVAFTEMGRAGVKRNEFTYSSVLRACGRMKDHGRCG 434
Query: 239 RQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD--KKNIASWNAMLVGY 296
R +HA+ +K+GLESD YVQCGLVDMYGKC LL +A RVFE + D K NI WNAML GY
Sbjct: 435 RLIHASTIKLGLESDIYVQCGLVDMYGKCGLLVEARRVFETVSDTNKTNIVCWNAMLTGY 494
Query: 297 IRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
IR+GLY+EA KFLY MKA+GIQ QESL+N+LRIAC S +
Sbjct: 495 IRHGLYIEAIKFLYQMKAAGIQPQESLLNELRIACGSTT 533
>gi|212721966|ref|NP_001131386.1| uncharacterized protein LOC100192712 [Zea mays]
gi|194691388|gb|ACF79778.1| unknown [Zea mays]
gi|414884126|tpg|DAA60140.1| TPA: hypothetical protein ZEAMMB73_895402 [Zea mays]
Length = 438
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 113/347 (32%), Positives = 181/347 (52%), Gaps = 28/347 (8%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHI--RKRVNIKPTLLFLNRLLLMHVS 58
MD L +P D+Y L++EC D+A + HI R+ + P+ + NRLLL + +
Sbjct: 102 MDALGIPPDEDIYISLLRECA---DAAEVASVHAHITARRASDGLPSPV-ANRLLLSYAA 157
Query: 59 CGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-- 116
CG ++ AR++FD MP + +WA M+ Y D + E + LFA M H V
Sbjct: 158 CGDIEAARRVFDGMPTTNGMAWATMVSAYSDGCLHHEAMRLFAHMC-----HGTPVLDGD 212
Query: 117 --AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFY---GKFRCLEDA 171
+ IV VL++C + LG+QVH L+ K G + SL+ Y G F A
Sbjct: 213 CYSHAIVAVLRSCTRAGELRLGEQVHALVVKKGRIHG-DIGSSLVQLYCDGGGFH--RSA 269
Query: 172 DFVFSQLKRHN------TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
V + +H+ WT+ I + RE + + F++M + ++S++ SS+L
Sbjct: 270 RRVLATTMQHHCQEPVPEAAWTSLITSCHRESLLSEAVDVFRDMASSGVPRSSFSLSSIL 329
Query: 226 KACGGVDDDGNC-GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
D G C G+Q+HA+ +K G++++++V GL+ MY K L DA R FE I K
Sbjct: 330 AVFAESQDPGCCCGQQVHADAIKRGVDTNQFVGSGLIHMYAKQGQLADATRAFETIGGKP 389
Query: 285 NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
+ A W+A+ + Y R G Y EAT+ +Y MKA+G+ + + + +R+AC
Sbjct: 390 DAACWSALAMAYARGGRYREATRIMYQMKAAGMNPSKEMADAVRLAC 436
>gi|115471361|ref|NP_001059279.1| Os07g0244400 [Oryza sativa Japonica Group]
gi|24417179|dbj|BAC22540.1| putative pentatricopeptide repeat-containing protein [Oryza sativa
Japonica Group]
gi|50508329|dbj|BAD30147.1| putative pentatricopeptide repeat-containing protein [Oryza sativa
Japonica Group]
gi|113610815|dbj|BAF21193.1| Os07g0244400 [Oryza sativa Japonica Group]
gi|125599686|gb|EAZ39262.1| hypothetical protein OsJ_23686 [Oryza sativa Japonica Group]
Length = 435
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 109/337 (32%), Positives = 176/337 (52%), Gaps = 11/337 (3%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFL-NRLLLMHVSC 59
+D L LP D+Y L+++C D+A + HI + + L L NRL+L + +C
Sbjct: 102 LDALRLPPDEDVYVSLLRDCA---DAAEVASVHAHIAGKFAVSGLPLPLANRLVLAYAAC 158
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI 119
G + ARQ+FDEMP+++ +WA M+ Y D + + + LF +M + +G +
Sbjct: 159 GDIGAARQVFDEMPVKNGITWATMVSAYSDGCFHHDALQLFVQMCHQVRGITGDHY-THA 217
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFV----- 174
IV VL++C ++ G+QVH + K + SL+ Y L A V
Sbjct: 218 IVAVLRSCARVNELQFGEQVHAFVVKKNGVCG-DVGSSLLQLYCDSGQLSSARHVLEMMR 276
Query: 175 FSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDD 234
FS + WT+ I R+G + F+ M I ++S++ SS+L C +
Sbjct: 277 FSCQEPVPEAAWTSLITAYHRDGILDDAIDVFRGMASSGIARSSFSLSSILAVCAEAKNK 336
Query: 235 GNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLV 294
G G+Q+HA+ +K GL+ +++V GL+ MY K L DA R FE I K + WNAM +
Sbjct: 337 GCYGQQVHADAIKRGLDMNQFVGSGLLHMYAKEGQLADAARAFEAIDGKPDAVCWNAMAM 396
Query: 295 GYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
Y R G+Y EAT+ +Y MKA+G+ + +N++++AC
Sbjct: 397 AYARGGMYREATRVVYQMKAAGMNPSKLTMNEVKLAC 433
Score = 45.1 bits (105), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 87/195 (44%), Gaps = 14/195 (7%)
Query: 148 SSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQ-VFNDF 206
S + L L+ Y + A VF ++ N + W A +V+ +G FH F
Sbjct: 141 SGLPLPLANRLVLAYAACGDIGAARQVFDEMPVKNGITW-ATMVSAYSDGCFHHDALQLF 199
Query: 207 KEMGRE--RIKKNSYTFS--SVLKACGGVDDDGNCGRQMHANIVKI-GLESDEYVQCGLV 261
+M + I + YT + +VL++C V++ G Q+HA +VK G+ D V L+
Sbjct: 200 VQMCHQVRGITGDHYTHAIVAVLRSCARVNEL-QFGEQVHAFVVKKNGVCGD--VGSSLL 256
Query: 262 DMYGKCRLLRDAERVFELI----VDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGI 317
+Y L A V E++ + A+W +++ Y R+G+ +A M +SGI
Sbjct: 257 QLYCDSGQLSSARHVLEMMRFSCQEPVPEAAWTSLITAYHRDGILDDAIDVFRGMASSGI 316
Query: 318 QIQESLINDLRIACS 332
++ + C+
Sbjct: 317 ARSSFSLSSILAVCA 331
>gi|125557824|gb|EAZ03360.1| hypothetical protein OsI_25499 [Oryza sativa Indica Group]
Length = 436
Score = 184 bits (468), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 109/337 (32%), Positives = 176/337 (52%), Gaps = 11/337 (3%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFL-NRLLLMHVSC 59
+D L LP D+Y L+++C D+A + HI + + L L NRL+L + +C
Sbjct: 103 LDALRLPPDEDVYVSLLRDCA---DAAEVASVHAHIAGKFAVSGLPLPLANRLVLAYAAC 159
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI 119
G + ARQ+FDE P+++ +WA M+ Y D + + + LFA+M + +G +
Sbjct: 160 GDIGAARQVFDETPVKNGITWATMVSAYSDGCFHHDALQLFAQMCHQVRGITGDHY-THA 218
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFV----- 174
IV VL++C ++ G+QVH + K + SL+ Y L A V
Sbjct: 219 IVAVLRSCARVNELQFGEQVHAFVVKKNGVCG-DVGSSLLQLYCDSGQLSSARHVLEMMR 277
Query: 175 FSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDD 234
FS + WT+ I R+G + F+ M I ++S++ SS+L C +
Sbjct: 278 FSCQEPVPEAAWTSLITAYHRDGILDDAIDVFRGMASSGIARSSFSLSSILAVCAEAKNK 337
Query: 235 GNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLV 294
G G+Q+HA+ +K GL+ +++V GL+ MY K L DA R FE I K + WNAM +
Sbjct: 338 GCYGQQVHADAIKRGLDMNQFVGSGLLHMYAKEGQLADAARAFEAIDGKPDAVCWNAMAM 397
Query: 295 GYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
Y R G+Y EAT+ +Y MKA+G+ + +N++++AC
Sbjct: 398 AYARGGMYREATRVVYQMKAAGMNPSKLTMNEVKLAC 434
Score = 44.3 bits (103), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 86/195 (44%), Gaps = 14/195 (7%)
Query: 148 SSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQ-VFNDF 206
S + L L+ Y + A VF + N + W A +V+ +G FH F
Sbjct: 142 SGLPLPLANRLVLAYAACGDIGAARQVFDETPVKNGITW-ATMVSAYSDGCFHHDALQLF 200
Query: 207 KEMGRE--RIKKNSYTFS--SVLKACGGVDDDGNCGRQMHANIVKI-GLESDEYVQCGLV 261
+M + I + YT + +VL++C V++ G Q+HA +VK G+ D V L+
Sbjct: 201 AQMCHQVRGITGDHYTHAIVAVLRSCARVNEL-QFGEQVHAFVVKKNGVCGD--VGSSLL 257
Query: 262 DMYGKCRLLRDAERVFELI----VDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGI 317
+Y L A V E++ + A+W +++ Y R+G+ +A M +SGI
Sbjct: 258 QLYCDSGQLSSARHVLEMMRFSCQEPVPEAAWTSLITAYHRDGILDDAIDVFRGMASSGI 317
Query: 318 QIQESLINDLRIACS 332
++ + C+
Sbjct: 318 ARSSFSLSSILAVCA 332
>gi|242048002|ref|XP_002461747.1| hypothetical protein SORBIDRAFT_02g007340 [Sorghum bicolor]
gi|241925124|gb|EER98268.1| hypothetical protein SORBIDRAFT_02g007340 [Sorghum bicolor]
Length = 442
Score = 177 bits (450), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 111/346 (32%), Positives = 183/346 (52%), Gaps = 26/346 (7%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRK--RVNIKPTLLFLNRLLLMHVS 58
MD L +P D+Y L++EC D+A + H+ + P+ + NR+LL + +
Sbjct: 106 MDALGIPPDEDIYISLLRECA---DAAEVASVHAHMTACCASDALPSPV-ANRVLLSYAA 161
Query: 59 CGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-- 116
CG ++ AR++FD MP R+ +WA M+ Y D + E + LFA M H LV
Sbjct: 162 CGDIEAARRVFDGMPDRNGMAWATMVSAYSDGCFHHEAMRLFAHMC-----HRTLVLDGD 216
Query: 117 --AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGS-LINFYGKFRCLE-DAD 172
+ I+ VL++C+ + LG+QVH L+ K G R + GS L+ Y + L A
Sbjct: 217 CCSHAILAVLRSCIRAGELRLGEQVHALVIKKG--RILGDIGSSLVQLYCESSGLHRSAR 274
Query: 173 FVFSQLKRHN------TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
V + +H+ WT+ I R+G + + F++M + ++S++ SS+L
Sbjct: 275 RVLVMMMQHHCQEPVPEAAWTSLITCCHRDGQLSEAIDVFRDMASSGVPRSSFSLSSILA 334
Query: 227 ACGGVDDDGNC-GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
+ G C G+Q+HA+ +K G++++++V GLV MY K L DA R F I K +
Sbjct: 335 VFAESQNQGCCCGQQVHADAIKRGVDTNQFVGSGLVHMYAKQGWLADAVRAFGAIGGKPD 394
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
A W+A+ + Y R G Y EAT+ +Y MKA+G+ + + + +R+AC
Sbjct: 395 TACWSALALAYARGGRYREATRVMYQMKAAGMTPSQEMADAVRLAC 440
>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
Length = 980
Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 108/339 (31%), Positives = 175/339 (51%), Gaps = 10/339 (2%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCG 60
+D+ + I Y+ L++ C K+ + NHI K I+P + N L+ M+ CG
Sbjct: 95 VDSPHIQIHRQTYSSLLQLCIKHKNLGDGERIHNHI-KFSKIQPDIFMWNMLISMYAKCG 153
Query: 61 QLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWI 119
++A+Q+FDEMP +D SW +++ GYV Y+E L +M++ V P +
Sbjct: 154 NTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDG------VKPDKYT 207
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
V +L AC N++ G ++ L+ G ++ + +LIN + K ++DA VF+ L
Sbjct: 208 FVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNNLP 267
Query: 180 RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGR 239
R + + WT+ I R F Q N F+ M E ++ + F S+LKAC + G+
Sbjct: 268 RRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQ-GK 326
Query: 240 QMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRN 299
++HA + ++GL+++ YV L+ MY KC + DA VF L V +N+ SW AM+ G+ ++
Sbjct: 327 RVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNL-VKGRNVVSWTAMIAGFAQH 385
Query: 300 GLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASK 338
G EA F M SGI+ + ACS SA K
Sbjct: 386 GRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALK 424
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 97/293 (33%), Positives = 145/293 (49%), Gaps = 8/293 (2%)
Query: 45 TLLFLNRLLL-MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEM 103
T LF+ L+ MH+ CG +D A ++F+ +P RD +W MI G +++ LF M
Sbjct: 238 TDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVM 297
Query: 104 MKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYG 163
+ + F V +LKAC +E GK+VH + ++G I + +L++ Y
Sbjct: 298 EEEGVQPDKVAF-----VSLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYT 352
Query: 164 KFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSS 223
K +EDA VF+ +K N V WTA I + G + F F +M I+ N TF S
Sbjct: 353 KCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMS 412
Query: 224 VLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
+L AC GRQ+H I+K G +D+ V+ L+ MY KC L DA VFE I K
Sbjct: 413 ILGACSRPSALKQ-GRQIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERI-SK 470
Query: 284 KNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+N+ +WNAM+ Y+++ Y A + GI+ S + C S A
Sbjct: 471 QNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDA 523
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/303 (26%), Positives = 147/303 (48%), Gaps = 8/303 (2%)
Query: 35 HIR-KRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADY 93
H R K V + + LL M+ CG ++ A ++F+ + R+ SW MI G+
Sbjct: 329 HARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRM 388
Query: 94 QECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNIS 153
+E F +M++ + F + +L AC ++ G+Q+H + K G +
Sbjct: 389 EEAFLFFNKMIESGIEPNRVTF-----MSILGACSRPSALKQGRQIHDRIIKAGYITDDR 443
Query: 154 LTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRER 213
+ +L++ Y K L DA VF ++ + N V W A I + + F+ + +E
Sbjct: 444 VRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEG 503
Query: 214 IKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDA 273
IK +S TF+S+L C D G+ + + I++ G ESD +++ LV M+ C L A
Sbjct: 504 IKPDSSTFTSILNVCKS-PDALELGKWVQSLIIRAGFESDLHIRNALVSMFVNCGDLMSA 562
Query: 274 ERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSS 333
+F + ++ ++ SWN ++ G++++G A + +M+ SG++ + L AC+S
Sbjct: 563 MNLFNDMPER-DLVSWNTIIAGFVQHGENQFAFDYFKMMQESGVKPDQITFTGLLNACAS 621
Query: 334 ISA 336
A
Sbjct: 622 PEA 624
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 126/268 (47%), Gaps = 9/268 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL M+ CG L AR +F+ + ++ +W MI YV Y + F ++K
Sbjct: 448 LLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEG---- 503
Query: 112 LLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
+ P + +L C +ELGK V L+ + G ++ + +L++ + L
Sbjct: 504 --IKPDSSTFTSILNVCKSPDALELGKWVQSLIIRAGFESDLHIRNALVSMFVNCGDLMS 561
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
A +F+ + + V W I + G F+ FK M +K + TF+ +L AC
Sbjct: 562 AMNLFNDMPERDLVSWNTIIAGFVQHGENQFAFDYFKMMQESGVKPDQITFTGLLNACAS 621
Query: 231 VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWN 290
+ GR++HA I + L+ D V GL+ MY KC + DA VF + KKN+ SW
Sbjct: 622 PEALTE-GRRLHALITEAALDCDVVVGTGLISMYTKCGSIDDAHLVFHNL-PKKNVYSWT 679
Query: 291 AMLVGYIRNGLYVEATKFLYLMKASGIQ 318
+M+ GY ++G EA + M+ G++
Sbjct: 680 SMITGYAQHGRGKEALELFCQMQQEGVK 707
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 77/299 (25%), Positives = 127/299 (42%), Gaps = 37/299 (12%)
Query: 10 TDMYTCLIKECTFQKDSAGAFELLNHIRK---RVNIKPTLLFLNRLLLMHVSCGQLDTAR 66
+ +T ++ C S A EL ++ R + L N L+ M V+CG L +A
Sbjct: 508 SSTFTSILNVCK----SPDALELGKWVQSLIIRAGFESDLHIRNALVSMFVNCGDLMSAM 563
Query: 67 QLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKA 126
LF++MP RD SW +I G+V + Q F M + + F +L A
Sbjct: 564 NLFNDMPERDLVSWNTIIAGFVQHGENQFAFDYFKMMQESGVKPDQITFTG-----LLNA 618
Query: 127 CVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVW 186
C + G+++H L+ + ++ + LI+ Y K ++DA VF L + N W
Sbjct: 619 CASPEALTEGRRLHALITEAALDCDVVVGTGLISMYTKCGSIDDAHLVFHNLPKKNVYSW 678
Query: 187 TAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIV 246
T+ I + G + F +M +E +K + TF L AC HA ++
Sbjct: 679 TSMITGYAQHGRGKEALELFCQMQQEGVKPDWITFVGALSACA------------HAGLI 726
Query: 247 KIGLESDEYVQ------------CGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
K GL E ++ C +VD++G+ LL +A + K + W A+L
Sbjct: 727 KEGLHHFESMKDFNIEPRMEHYGC-MVDLFGRAGLLHEAVEFINKMQVKPDSRLWGALL 784
>gi|449443492|ref|XP_004139511.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
mitochondrial-like [Cucumis sativus]
Length = 678
Score = 171 bits (432), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 96/321 (29%), Positives = 165/321 (51%), Gaps = 8/321 (2%)
Query: 12 MYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDE 71
+Y+ ++ +CT+ + + HI+ + L+ LN +L M+ CG L+ A+ LFD+
Sbjct: 107 LYSKMLNKCTYLRKLKQGRAIHAHIQSST-FEDDLVLLNFILNMYAKCGSLEEAQDLFDK 165
Query: 72 MPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTM 131
MP +D SW V+I GY E + LF +M+ H+ + + +LKA
Sbjct: 166 MPTKDMVSWTVLISGYSQSGQASEALALFPKML-----HLGFQPNEFTLSSLLKASGTGP 220
Query: 132 NMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIV 191
+ G+Q+H K G N+ + SL++ Y ++ + +A +F+ L N V W A I
Sbjct: 221 SDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIA 280
Query: 192 NNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLE 251
+ R+G V F +M R+ + +T+SSV AC G+ +HA+++K G +
Sbjct: 281 GHARKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACAS-SGSLEQGKWVHAHVIKSGGQ 339
Query: 252 SDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYL 311
Y+ L+DMY K ++DA++VF +V K++I SWN+++ GY ++GL EA +
Sbjct: 340 PIAYIGNTLIDMYAKSGSIKDAKKVFRRLV-KQDIVSWNSIISGYAQHGLGAEALQLFEQ 398
Query: 312 MKASGIQIQESLINDLRIACS 332
M + +Q E + ACS
Sbjct: 399 MLKAKVQPNEITFLSVLTACS 419
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 100/211 (47%), Gaps = 2/211 (0%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
+L C ++ G+ +H + ++ L ++N Y K LE+A +F ++ +
Sbjct: 111 MLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQDLFDKMPTKD 170
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
V WT I + G + F +M + N +T SS+LKA G D + GRQ+H
Sbjct: 171 MVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPSDHH-GRQLH 229
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
A +K G + + +V L+DMY + +R+A+ +F + KN+ SWNA++ G+ R G
Sbjct: 230 AFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLA-AKNVVSWNALIAGHARKGEG 288
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIACSS 333
+ M G + + + AC+S
Sbjct: 289 EHVMRLFLQMLRQGFEPTHFTYSSVFTACAS 319
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/246 (24%), Positives = 116/246 (47%), Gaps = 10/246 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+ LL M+ + A+ +F+ + ++ SW +I G+ + + + LF +M+++
Sbjct: 245 SSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFLQMLRQGFE 304
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ + V AC + ++E GK VH + K G + +LI+ Y K ++
Sbjct: 305 PTHFTYSS-----VFTACASSGSLEQGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIK 359
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
DA VF +L + + V W + I + G + F++M + +++ N TF SVL AC
Sbjct: 360 DAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACS 419
Query: 230 --GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
G+ D+G ++ + K +E+ +VD+ G+ L +A + E + K A
Sbjct: 420 HSGLLDEGQYYFEL---MKKHKIEAQVAHHVTVVDLLGRAGRLNEANKFIEEMPIKPTAA 476
Query: 288 SWNAML 293
W A+L
Sbjct: 477 VWGALL 482
>gi|449527343|ref|XP_004170671.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g24000, mitochondrial-like [Cucumis sativus]
Length = 677
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 97/321 (30%), Positives = 166/321 (51%), Gaps = 9/321 (2%)
Query: 12 MYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDE 71
+Y+ ++ +CT+ + + HI+ + L+ LN +L M+ CG L+ A+ LFD+
Sbjct: 107 LYSKMLNKCTYLRKLKQGRAIHAHIQSST-FEDDLVLLNFILNMYAKCGSLEEAQDLFDK 165
Query: 72 MPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTM 131
MP +D SW V+I GY E + LF +M+ H+ + + +LKA
Sbjct: 166 MPTKDMVSWTVLISGYSQSGQASEALALFPKML-----HLGFQPNEFTLSSLLKASGTGP 220
Query: 132 NMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIV 191
+ G+Q+H K G N+ + SL++ Y ++ + +A +F+ L N V W A I
Sbjct: 221 SDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIA 280
Query: 192 NNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLE 251
+ R+G V F +M R+ + +T+SSVL AC G+ +HA+++K G +
Sbjct: 281 GHARKGEGEHVMRLFXQMLRQGFEPTHFTYSSVL-ACAS-SGSLEQGKWVHAHVIKSGGQ 338
Query: 252 SDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYL 311
Y+ L+DMY K ++DA++VF +V K++I SWN+++ GY ++GL EA +
Sbjct: 339 PIAYIGNTLIDMYAKSGSIKDAKKVFRRLV-KQDIVSWNSIISGYAQHGLGAEALQLFEQ 397
Query: 312 MKASGIQIQESLINDLRIACS 332
M + +Q E + ACS
Sbjct: 398 MLKAKVQPNEITFLSVLTACS 418
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/246 (24%), Positives = 115/246 (46%), Gaps = 11/246 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+ LL M+ + A+ +F+ + ++ SW +I G+ + + + LF +M+++
Sbjct: 245 SSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFXQMLRQG-- 302
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
P + AC + ++E GK VH + K G + +LI+ Y K ++
Sbjct: 303 ----FEPTHFTYSSVLACASSGSLEQGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIK 358
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
DA VF +L + + V W + I + G + F++M + +++ N TF SVL AC
Sbjct: 359 DAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACS 418
Query: 230 --GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
G+ D+G ++ + K +E+ +VD+ G+ L +A + E + K A
Sbjct: 419 HSGLLDEGQYYFEL---MKKHKIEAQVAHHVTVVDLLGRAGRLNEANKFIEEMPIKPTAA 475
Query: 288 SWNAML 293
W A+L
Sbjct: 476 VWGALL 481
>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 986
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 104/338 (30%), Positives = 174/338 (51%), Gaps = 8/338 (2%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCG 60
+D+ + I Y+ L++ C K+ + NHI+K ++P + N L+ M+ CG
Sbjct: 101 VDSSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIKKS-GVQPDIFMWNTLINMYAKCG 159
Query: 61 QLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWII 120
+A+Q+FD+M +D SW +++ GYV Y+E L +M++ F
Sbjct: 160 NTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTF----- 214
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
V +L AC N++ G++++ L+ K G ++ + +LIN + K + DA VF L
Sbjct: 215 VSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPT 274
Query: 181 HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQ 240
+ V WT+ I R G F Q N F+ M E ++ + F S+L+AC + G++
Sbjct: 275 RDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNH-PEALEQGKK 333
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
+HA + ++G +++ YV ++ MY KC + DA VF+L V +N+ SW AM+ G+ ++G
Sbjct: 334 VHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDL-VKGRNVVSWTAMIAGFAQHG 392
Query: 301 LYVEATKFLYLMKASGIQIQESLINDLRIACSSISASK 338
EA F M SGI+ + ACSS SA K
Sbjct: 393 RIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALK 430
Score = 133 bits (335), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 85/303 (28%), Positives = 146/303 (48%), Gaps = 8/303 (2%)
Query: 35 HIR-KRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADY 93
H R K V + +L M+ CG ++ A ++FD + R+ SW MI G+
Sbjct: 335 HARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRI 394
Query: 94 QECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNIS 153
E F +M++ + F + +L AC ++ G+Q+ + + G +
Sbjct: 395 DEAFLFFNKMIESGIEPNRVTF-----MSILGACSSPSALKRGQQIQDHIIEAGYGSDDR 449
Query: 154 LTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRER 213
+ +L++ Y K L+DA VF ++ + N V W A I + + F+ + +E
Sbjct: 450 VRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEG 509
Query: 214 IKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDA 273
IK NS TF+S+L C D G+ +H I+K GLESD +V LV M+ C L A
Sbjct: 510 IKPNSSTFTSILNVCKS-SDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSA 568
Query: 274 ERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSS 333
+ +F + K+++ SWN ++ G++++G A + +M+ SGI+ + L AC+S
Sbjct: 569 KNLFN-DMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACAS 627
Query: 334 ISA 336
A
Sbjct: 628 PEA 630
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 78/267 (29%), Positives = 132/267 (49%), Gaps = 7/267 (2%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL M+ CG L A ++F+++ ++ +W MI YV Y + F ++K
Sbjct: 454 LLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPN 513
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
F + +L C + ++ELGK VH L+ K G ++ ++ +L++ + L A
Sbjct: 514 SSTFTS-----ILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSA 568
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
+F+ + + + V W I + G F+ FK M IK + TF+ +L AC
Sbjct: 569 KNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASP 628
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
+ GR++HA I + + D V GL+ MY KC + DA +VF + KKN+ SW +
Sbjct: 629 EALTE-GRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKL-PKKNVYSWTS 686
Query: 292 MLVGYIRNGLYVEATKFLYLMKASGIQ 318
M+ GY ++G EA + Y M+ G++
Sbjct: 687 MITGYAQHGRGKEALELFYQMQQEGVK 713
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 75/297 (25%), Positives = 132/297 (44%), Gaps = 33/297 (11%)
Query: 10 TDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLF 69
+ +T ++ C DS + ++ + + ++ L N L+ M V+CG L +A+ LF
Sbjct: 514 SSTFTSILNVCK-SSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLF 572
Query: 70 DEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVC 129
++MP RD SW +I G+V Q F M + + F +L AC
Sbjct: 573 NDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTG-----LLNACAS 627
Query: 130 TMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAK 189
+ G+++H L+ + ++ + LI+ Y K +EDA VF +L + N WT+
Sbjct: 628 PEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSM 687
Query: 190 IVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIG 249
I + G + F +M +E +K + TF L AC HA +++ G
Sbjct: 688 ITGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACA------------HAGLIEEG 735
Query: 250 LES------------DEYVQCGLVDMYGKCRLLRDA-ERVFELIVDKKNIASWNAML 293
L E+ C +VD++G+ LL +A E + ++ V+ + W A+L
Sbjct: 736 LHHFQSMKEFNIEPRMEHYGC-MVDLFGRAGLLNEAVEFIIKMQVEPDSRV-WGALL 790
>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
Length = 986
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 104/338 (30%), Positives = 174/338 (51%), Gaps = 8/338 (2%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCG 60
+D+ + I Y+ L++ C K+ + NHI+K ++P + N L+ M+ CG
Sbjct: 101 VDSSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIKKS-GVQPDIFMRNTLINMYAKCG 159
Query: 61 QLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWII 120
+A+Q+FD+M +D SW +++ GYV Y+E L +M++ F
Sbjct: 160 NTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTF----- 214
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
V +L AC N++ G++++ L+ K G ++ + +LIN + K + DA VF L
Sbjct: 215 VSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPT 274
Query: 181 HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQ 240
+ V WT+ I R G F Q N F+ M E ++ + F S+L+AC + G++
Sbjct: 275 RDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNH-PEALEQGKK 333
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
+HA + ++G +++ YV ++ MY KC + DA VF+L V +N+ SW AM+ G+ ++G
Sbjct: 334 VHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDL-VKGRNVVSWTAMIAGFAQHG 392
Query: 301 LYVEATKFLYLMKASGIQIQESLINDLRIACSSISASK 338
EA F M SGI+ + ACSS SA K
Sbjct: 393 RIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALK 430
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 85/303 (28%), Positives = 146/303 (48%), Gaps = 8/303 (2%)
Query: 35 HIR-KRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADY 93
H R K V + +L M+ CG ++ A ++FD + R+ SW MI G+
Sbjct: 335 HARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRI 394
Query: 94 QECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNIS 153
E F +M++ + F + +L AC ++ G+Q+ + + G +
Sbjct: 395 DEAFLFFNKMIESGIEPNRVTF-----MSILGACSSPSALKRGQQIQDHIIEAGYGSDDR 449
Query: 154 LTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRER 213
+ +L++ Y K L+DA VF ++ + N V W A I + + F+ + +E
Sbjct: 450 VRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEG 509
Query: 214 IKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDA 273
IK NS TF+S+L C D G+ +H I+K GLESD +V LV M+ C L A
Sbjct: 510 IKPNSSTFTSILNVCKS-SDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSA 568
Query: 274 ERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSS 333
+ +F + K+++ SWN ++ G++++G A + +M+ SGI+ + L AC+S
Sbjct: 569 KNLFN-DMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACAS 627
Query: 334 ISA 336
A
Sbjct: 628 PEA 630
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 78/267 (29%), Positives = 132/267 (49%), Gaps = 7/267 (2%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL M+ CG L A ++F+++ ++ +W MI YV Y + F ++K
Sbjct: 454 LLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPN 513
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
F + +L C + ++ELGK VH L+ K G ++ ++ +L++ + L A
Sbjct: 514 SSTFTS-----ILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSA 568
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
+F+ + + + V W I + G F+ FK M IK + TF+ +L AC
Sbjct: 569 KNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASP 628
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
+ GR++HA I + + D V GL+ MY KC + DA +VF + KKN+ SW +
Sbjct: 629 EALTE-GRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKL-PKKNVYSWTS 686
Query: 292 MLVGYIRNGLYVEATKFLYLMKASGIQ 318
M+ GY ++G EA + Y M+ G++
Sbjct: 687 MIAGYAQHGRGKEALELFYQMQQEGVK 713
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 75/297 (25%), Positives = 132/297 (44%), Gaps = 33/297 (11%)
Query: 10 TDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLF 69
+ +T ++ C DS + ++ + + ++ L N L+ M V+CG L +A+ LF
Sbjct: 514 SSTFTSILNVCK-SSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLF 572
Query: 70 DEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVC 129
++MP RD SW +I G+V Q F M + + F +L AC
Sbjct: 573 NDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTG-----LLNACAS 627
Query: 130 TMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAK 189
+ G+++H L+ + ++ + LI+ Y K +EDA VF +L + N WT+
Sbjct: 628 PEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSM 687
Query: 190 IVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIG 249
I + G + F +M +E +K + TF L AC HA +++ G
Sbjct: 688 IAGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACA------------HAGLIEEG 735
Query: 250 LES------------DEYVQCGLVDMYGKCRLLRDA-ERVFELIVDKKNIASWNAML 293
L E+ C +VD++G+ LL +A E + ++ V+ + W A+L
Sbjct: 736 LHHFQSMKEFNIEPRMEHYGC-MVDLFGRAGLLNEAVEFIIKMQVEPDSRV-WGALL 790
>gi|449442080|ref|XP_004138810.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18520-like [Cucumis sativus]
gi|449490224|ref|XP_004158542.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18520-like [Cucumis sativus]
Length = 619
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 97/291 (33%), Positives = 157/291 (53%), Gaps = 14/291 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR--- 106
N LL ++ G L AR++FDEMP+R +W +I GY+D+ +E + LF++ +K
Sbjct: 126 NNLLSSYLRLGMLVDARKVFDEMPMRSVVTWTAIINGYIDLDLTEEALALFSDSVKSGVL 185
Query: 107 KKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166
G M VC+L C ++ ELG+Q+HG++ K G+ N+ + ++I FY + +
Sbjct: 186 ANGQMF--------VCILNLCAKRLDFELGRQIHGVIVK-GNRGNLIVDSAIIYFYAQCK 236
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
+ A F +++R + V WT+ I + ++G + + F M + N ++ SVLK
Sbjct: 237 DISSAFVAFERMRRRDVVCWTSMITSCSQQGLGREAISMFSNMLSDEFLPNEFSVCSVLK 296
Query: 227 ACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
ACG + + GRQ+H I+K +++D +V LVDMY KC L D+ VF+ + + +N
Sbjct: 297 ACGE-ERELKIGRQLHGLIIKKIIKNDVFVGTSLVDMYAKCGNLADSREVFDGMRN-RNT 354
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISAS 337
+W +++ GY R GL EA LMK I I + AC SI AS
Sbjct: 355 VTWTSIIAGYAREGLGEEALNLFRLMKRQRIPANNLTIVSILRACGSIEAS 405
Score = 147 bits (370), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 98/321 (30%), Positives = 162/321 (50%), Gaps = 12/321 (3%)
Query: 16 LIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLR 75
++K C +++ +L I K++ IK + L+ M+ CG L +R++FD M R
Sbjct: 294 VLKACGEERELKIGRQLHGLIIKKI-IKNDVFVGTSLVDMYAKCGNLADSREVFDGMRNR 352
Query: 76 DFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPA--WIIVCVLKACVCTMNM 133
+ +W +I GY +E + LF +MKR++ PA IV +L+AC
Sbjct: 353 NTVTWTSIIAGYAREGLGEEALNLF-RLMKRQR------IPANNLTIVSILRACGSIEAS 405
Query: 134 ELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNN 193
G++VH + K NI + +L+ FY K R A V + + V WTA I
Sbjct: 406 LTGREVHAQIVKNSFQTNIHIGSTLVWFYCKCRNQLKASMVLQLMPLRDVVSWTAIISGC 465
Query: 194 CREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESD 253
GH + K M E ++ NS+T+SS LKAC ++ G+ +H++ K S+
Sbjct: 466 AHLGHESEALEFLKNMIEEGVEPNSFTYSSTLKACAKMEAVLQ-GKMIHSSANKTSALSN 524
Query: 254 EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMK 313
+V L+ MY KC + +A +VF+ + +N+ SW AM++ Y RNGL EA K +Y M+
Sbjct: 525 VFVGSALIYMYAKCGYVTEASQVFDSM-PVRNLVSWKAMILCYARNGLCREALKLMYRMQ 583
Query: 314 ASGIQIQESLINDLRIACSSI 334
A G ++ + ++ + AC +
Sbjct: 584 AEGFEVDDYILGTVYGACGDV 604
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 96/329 (29%), Positives = 159/329 (48%), Gaps = 15/329 (4%)
Query: 11 DMYTCLIKECTFQKDSAGAFELLNHIRKRV--NIKPTLLFLNRLLLMHVSCGQLDTARQL 68
M+ C++ C + D FEL I + + L+ + ++ + C + +A
Sbjct: 189 QMFVCILNLCAKRLD----FELGRQIHGVIVKGNRGNLIVDSAIIYFYAQCKDISSAFVA 244
Query: 69 FDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVC-VLKAC 127
F+ M RD W MI +E I++F+ M+ + P VC VLKAC
Sbjct: 245 FERMRRRDVVCWTSMITSCSQQGLGREAISMFSNMLSDE------FLPNEFSVCSVLKAC 298
Query: 128 VCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWT 187
+++G+Q+HGL+ K ++ + SL++ Y K L D+ VF ++ NTV WT
Sbjct: 299 GEERELKIGRQLHGLIIKKIIKNDVFVGTSLVDMYAKCGNLADSREVFDGMRNRNTVTWT 358
Query: 188 AKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVK 247
+ I REG + N F+ M R+RI N+ T S+L+ACG ++ GR++HA IVK
Sbjct: 359 SIIAGYAREGLGEEALNLFRLMKRQRIPANNLTIVSILRACGSIEASLT-GREVHAQIVK 417
Query: 248 IGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATK 307
+++ ++ LV Y KCR A V +L+ +++ SW A++ G G EA +
Sbjct: 418 NSFQTNIHIGSTLVWFYCKCRNQLKASMVLQLM-PLRDVVSWTAIISGCAHLGHESEALE 476
Query: 308 FLYLMKASGIQIQESLINDLRIACSSISA 336
FL M G++ + AC+ + A
Sbjct: 477 FLKNMIEEGVEPNSFTYSSTLKACAKMEA 505
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 86/229 (37%), Gaps = 11/229 (4%)
Query: 6 LPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTA 65
L I + + C E + A + N + ++I TL++ + C A
Sbjct: 390 LTIVSILRACGSIEASLTGREVHAQIVKNSFQTNIHIGSTLVWF------YCKCRNQLKA 443
Query: 66 RQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLK 125
+ MPLRD SW +I G + E + M++ + + LK
Sbjct: 444 SMVLQLMPLRDVVSWTAIISGCAHLGHESEALEFLKNMIEEGVEPNSFTYSS-----TLK 498
Query: 126 ACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVV 185
AC + GK +H K + N+ + +LI Y K + +A VF + N V
Sbjct: 499 ACAKMEAVLQGKMIHSSANKTSALSNVFVGSALIYMYAKCGYVTEASQVFDSMPVRNLVS 558
Query: 186 WTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDD 234
W A I+ R G + M E + + Y +V ACG V D
Sbjct: 559 WKAMILCYARNGLCREALKLMYRMQAEGFEVDDYILGTVYGACGDVKCD 607
>gi|449453101|ref|XP_004144297.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g26540-like [Cucumis sativus]
gi|449521874|ref|XP_004167954.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g26540-like [Cucumis sativus]
Length = 697
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 105/344 (30%), Positives = 168/344 (48%), Gaps = 39/344 (11%)
Query: 3 NLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQL 62
N P +YT L + C+ + A ++ +H+ P L LNR + + CG L
Sbjct: 52 NSPFPFPHTLYTRLFQLCSSTRALVEARKVESHLATFCPTPPIFL-LNRAIEAYGKCGCL 110
Query: 63 DTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI-IV 121
AR+LFDEMP RD SW MI Y E + L+ ++ K V+ + +
Sbjct: 111 KDARELFDEMPQRDGGSWNAMITAYTQNGYALEALNLYLDLNKSG------VYATEVTLA 164
Query: 122 CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH 181
+L++C + + +Q+HG + K G N+ L SL++ YGK R + DA +F +++
Sbjct: 165 SILRSCGSVLALHFSRQIHGHIVKCGFVGNVILESSLVDVYGKCRLMNDARSMFDEIQNR 224
Query: 182 NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQM 241
N V W + G+ + + F +M RE + +S+TFS+ L AC + G Q+
Sbjct: 225 NDVSWNVIVRRYLEVGNGKEAVSMFFQMFRESLMPSSFTFSNALIACSRMAALIEGG-QI 283
Query: 242 HANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVF------------------------ 277
H +VK+GLE +E + L+DMY KC L +A +VF
Sbjct: 284 HGIVVKVGLEENEVISSSLIDMYVKCGTLANAHQVFTQPSSRNLISWTSMVYAYATSGDV 343
Query: 278 ----ELI--VDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKAS 315
EL + ++N+ SWNAML GYI + + EA +F++LM++S
Sbjct: 344 LKARELFNEMPERNVISWNAMLAGYIHSSQWEEALEFVHLMRSS 387
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 83/288 (28%), Positives = 146/288 (50%), Gaps = 10/288 (3%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L+ ++ + + G + AR+LF+EMP R+ SW M+ GY+ + ++E + F +M+
Sbjct: 327 LISWTSMVYAYATSGDVLKARELFNEMPERNVISWNAMLAGYIHSSQWEEALE-FVHLMR 385
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
+ + +L C + ++E GKQVHG +++ G N+ + +L++ YGK
Sbjct: 386 SS----IKDIDRTTLCLILNVCTGSSDVERGKQVHGFVYRTGFYANLYIGNALLDMYGKC 441
Query: 166 RCLEDADFVFSQLKR-HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
L+ A F Q+ + + V W A + + R G Q F EM E N++TF+++
Sbjct: 442 GNLKSAKVWFYQMSQWRDKVSWNALLTAHARHGMSEQAMTIFSEMQLE-TDPNNFTFATL 500
Query: 225 LKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
L AC + + G+Q+H +V+ D + LVDMY KCR L+ A +VFE + +
Sbjct: 501 LGACANMFALEH-GKQIHGFMVRNNYAIDIVLTGALVDMYCKCRELKYALKVFEHVAS-R 558
Query: 285 NIASWNAMLVGYIRNGLYVEATKFLYLMK-ASGIQIQESLINDLRIAC 331
++ WN++++G N + A K LM GI+ + +AC
Sbjct: 559 DVVLWNSIILGCCHNRRDMLAIKLFQLMTMEEGIKPDHVTFQGILLAC 606
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/286 (26%), Positives = 130/286 (45%), Gaps = 37/286 (12%)
Query: 59 CGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAW 118
C ++ AR +FDE+ R+ SW V++ Y++V + +E +++F +M + F
Sbjct: 208 CRLMNDARSMFDEIQNRNDVSWNVIVRRYLEVGNGKEAVSMFFQMFRESLMPSSFTFSNA 267
Query: 119 IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL 178
+I C A + G Q+HG++ K+G N ++ SLI+ Y K L +A VF+Q
Sbjct: 268 LIACSRMAALIE-----GGQIHGIVVKVGLEENEVISSSLIDMYVKCGTLANAHQVFTQP 322
Query: 179 KRHNTVVWTAKIVNNCREGHF---HQVFNDFKE--------------------------- 208
N + WT+ + G ++FN+ E
Sbjct: 323 SSRNLISWTSMVYAYATSGDVLKARELFNEMPERNVISWNAMLAGYIHSSQWEEALEFVH 382
Query: 209 MGRERIKK-NSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKC 267
+ R IK + T +L C G D G+Q+H + + G ++ Y+ L+DMYGKC
Sbjct: 383 LMRSSIKDIDRTTLCLILNVCTG-SSDVERGKQVHGFVYRTGFYANLYIGNALLDMYGKC 441
Query: 268 RLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMK 313
L+ A+ F + ++ SWNA+L + R+G+ +A M+
Sbjct: 442 GNLKSAKVWFYQMSQWRDKVSWNALLTAHARHGMSEQAMTIFSEMQ 487
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/243 (26%), Positives = 108/243 (44%), Gaps = 34/243 (13%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMP-LRDFNSWAVMIVGYVDVADYQECI 97
R L N LL M+ CG L +A+ F +M RD SW ++ + ++ +
Sbjct: 421 RTGFYANLYIGNALLDMYGKCGNLKSAKVWFYQMSQWRDKVSWNALLTAHARHGMSEQAM 480
Query: 98 TLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGS 157
T+F+EM + + +L AC +E GKQ+HG + + + +I LTG+
Sbjct: 481 TIFSEMQLETDPN------NFTFATLLGACANMFALEHGKQIHGFMVRNNYAIDIVLTGA 534
Query: 158 LINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRER-IKK 216
L++ Y K R L+ A VF + + V+W + I+ C F+ M E IK
Sbjct: 535 LVDMYCKCRELKYALKVFEHVASRDVVLWNSIILGCCHNRRDMLAIKLFQLMTMEEGIKP 594
Query: 217 NSYTFSSVLKACGGVDDDGNCGRQMHANIVKIG-------------LESDEYVQCGLVDM 263
+ TF +L AC +H N+V++G + E+ +C +V++
Sbjct: 595 DHVTFQGILLAC------------LHENLVELGRKYFDSMSEKFCVIPRLEHYEC-MVEL 641
Query: 264 YGK 266
YG+
Sbjct: 642 YGQ 644
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 261 VDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQ 320
++ YGKC L+DA +F+ + +++ SWNAM+ Y +NG +EA + SG+
Sbjct: 101 IEAYGKCGCLKDARELFDEM-PQRDGGSWNAMITAYTQNGYALEALNLYLDLNKSGVYAT 159
Query: 321 ESLINDLRIACSSISA 336
E + + +C S+ A
Sbjct: 160 EVTLASILRSCGSVLA 175
>gi|357111087|ref|XP_003557346.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31790-like [Brachypodium distachyon]
Length = 435
Score = 163 bits (413), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 96/291 (32%), Positives = 147/291 (50%), Gaps = 11/291 (3%)
Query: 48 FLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRK 107
NRLL + SCG AR++FDEMP++D +WA M+ Y D + E I LF M
Sbjct: 147 LANRLLHSYASCGDTAAARKVFDEMPVKDDIAWATMVSAYSDGCFHNEAIRLFTRMCHEA 206
Query: 108 KGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNI--SLTGSLINFYGKF 165
+ + IV VL++C + G+QVH L+ K + + SL+ Y +
Sbjct: 207 Q-ELTGDCHDRAIVAVLRSCARVSKISFGEQVHALVVK---KKGVCGDAGSSLLQLYCES 262
Query: 166 RCLEDADFVFSQLK-----RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYT 220
+ A V ++ WT+ I R G + + F++M + ++S++
Sbjct: 263 NRHDSARQVLEMMRCSCQEPVPEAAWTSFITACHRVGQLDEAIDAFRDMVSSGVTRSSFS 322
Query: 221 FSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELI 280
SS+L C D+ G+Q+HA+ +K LE++++V GLV MY K L DA R FE
Sbjct: 323 LSSILTVCAESDNHRCYGQQVHADAIKHSLETNQFVMSGLVHMYAKQGRLADAARAFETS 382
Query: 281 VDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
+ + WNAM +GY R G Y EAT+ +Y MKA+GI +N +R+AC
Sbjct: 383 GGEPDAVCWNAMAMGYARGGCYREATRMMYQMKAAGIDPPGPTMNVVRMAC 433
>gi|224057824|ref|XP_002299342.1| predicted protein [Populus trichocarpa]
gi|222846600|gb|EEE84147.1| predicted protein [Populus trichocarpa]
Length = 684
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 102/338 (30%), Positives = 167/338 (49%), Gaps = 14/338 (4%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCG 60
M++ + ++ Y CL + C K S L + +R P N +L M+ CG
Sbjct: 1 MEDAGISVSPRSYKCLFEACGKIK-SLFDGRLFHEQMQRTVKNPPEFLENSVLKMYCKCG 59
Query: 61 QLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK---RKKGHMLLVFPA 117
L AR++FDEM R+ SW +I Y + + + +F+ M++ + G + F
Sbjct: 60 SLADARKVFDEMRERNLVSWNTIISAYAENGVFDKGFCMFSNMLELETKPNGSTYIGF-- 117
Query: 118 WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQ 177
L++ + +E+GKQ+H + G N S+ ++ N Y K LE A+ VF +
Sbjct: 118 ------LRSLLNPSGLEIGKQIHSHAIRSGLGSNASVNTAISNMYVKCGWLEGAELVFEK 171
Query: 178 LKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC 237
+ N V WT +V + F +M E ++ + Y FS VLKAC G+++ N
Sbjct: 172 MSEKNAVAWTGIMVGYTQAERQMDALALFAKMVNEGVELDEYVFSIVLKACAGLEEL-NF 230
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYI 297
GRQ+H +IVK+GLES+ V LVD Y KC L A + FE I + ++ SW+A++ GY
Sbjct: 231 GRQIHGHIVKLGLESEVSVGTPLVDFYVKCSNLESATKAFEWISEPNDV-SWSALITGYC 289
Query: 298 RNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
+ G + EA K ++ + I + ACS+++
Sbjct: 290 QMGEFEEALKTFESLRTRSVDINSFTYTSIFQACSALA 327
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 85/278 (30%), Positives = 139/278 (50%), Gaps = 7/278 (2%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+V CG L+ A +F++M ++ +W ++VGY + + LFA+M+ +
Sbjct: 155 MYVKCGWLEGAELVFEKMSEKNAVAWTGIMVGYTQAERQMDALALFAKMVNEG-----VE 209
Query: 115 FPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFV 174
++ VLKAC + G+Q+HG + KLG +S+ L++FY K LE A
Sbjct: 210 LDEYVFSIVLKACAGLEELNFGRQIHGHIVKLGLESEVSVGTPLVDFYVKCSNLESATKA 269
Query: 175 FSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDD 234
F + N V W+A I C+ G F + F+ + + NS+T++S+ +AC + D
Sbjct: 270 FEWISEPNDVSWSALITGYCQMGEFEEALKTFESLRTRSVDINSFTYTSIFQACSAL-AD 328
Query: 235 GNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLV 294
N G Q HA+ +K L + ++ + ++ MY +C L A RVFE I D +A W A++
Sbjct: 329 FNSGAQAHADAIKSSLVAYQHGESAMITMYSRCGRLDYATRVFESIDDPDAVA-WTAIIA 387
Query: 295 GYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
GY G EA K M+ G++ + ACS
Sbjct: 388 GYAYQGNAPEALKLFRRMQDCGVRPNAVTFIAVLTACS 425
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/286 (20%), Positives = 124/286 (43%), Gaps = 10/286 (3%)
Query: 12 MYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDE 71
+++ ++K C ++ ++ HI K + ++ + L+ +V C L++A + F+
Sbjct: 214 VFSIVLKACAGLEELNFGRQIHGHIVK-LGLESEVSVGTPLVDFYVKCSNLESATKAFEW 272
Query: 72 MPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTM 131
+ + SW+ +I GY + +++E + F + R + ++ + +AC
Sbjct: 273 ISEPNDVSWSALITGYCQMGEFEEALKTFESLRTRS-----VDINSFTYTSIFQACSALA 327
Query: 132 NMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIV 191
+ G Q H K ++I Y + L+ A VF + + V WTA I
Sbjct: 328 DFNSGAQAHADAIKSSLVAYQHGESAMITMYSRCGRLDYATRVFESIDDPDAVAWTAIIA 387
Query: 192 NNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG--GVDDDGNCGRQMHANIVKIG 249
+G+ + F+ M ++ N+ TF +VL AC G+ +G + ++ +
Sbjct: 388 GYAYQGNAPEALKLFRRMQDCGVRPNAVTFIAVLTACSHSGLVIEGRQYLESMSSNYGVA 447
Query: 250 LESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
D Y C +VD+Y + L++A + + + SW +L G
Sbjct: 448 TTIDHY-DC-MVDIYSRAGFLQEALELIRSMPFSPDAMSWKCLLGG 491
>gi|225459405|ref|XP_002284293.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18520-like [Vitis vinifera]
Length = 595
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 101/319 (31%), Positives = 169/319 (52%), Gaps = 8/319 (2%)
Query: 16 LIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLR 75
++K C +K +L I K++ K + L+ M+ CG++ +R++FD M R
Sbjct: 270 VLKACGEEKALEFGKQLHGAIIKKM-FKEDVFIGTSLVGMYAKCGEILDSRKVFDGMKKR 328
Query: 76 DFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMEL 135
+ +W +I GY +E I+LF +MKR+K + +V +L+AC T N+ +
Sbjct: 329 NTVTWTSIIAGYARNGQGEEAISLF-RVMKRRK----IFANNLTVVSILRACGSTRNLLM 383
Query: 136 GKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCR 195
GK+VH + K NI + +L+ FY K A V + + V WTA I
Sbjct: 384 GKEVHAQIMKNSMQSNIYIGSTLVWFYCKCEEHPFASKVLQNMPLRDVVSWTAIISGYTS 443
Query: 196 EGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEY 255
GH + KEM E ++ N +T+SS LKAC ++ G+ +H+++ K S+ +
Sbjct: 444 LGHEPEALEFLKEMLEEGVEPNPFTYSSALKACAHLEAILQ-GKLIHSSVNKTLALSNVF 502
Query: 256 VQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKAS 315
V L++MY KC + +A +VF+ + ++N+ SW AM+VGY RNGL EA K +Y M+A
Sbjct: 503 VGSALINMYAKCGYVSEAIQVFDSM-PQRNLVSWKAMIVGYARNGLCGEALKLMYRMQAE 561
Query: 316 GIQIQESLINDLRIACSSI 334
GI++ + ++ + AC +
Sbjct: 562 GIEVDDYILTTVLSACGDV 580
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 98/328 (29%), Positives = 157/328 (47%), Gaps = 17/328 (5%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRK---RVNIKPTLLFLNRLLLMHVSCGQLDTARQLF 69
+ C++ C+ + D FEL I + N + L+ + L+ + CG L A F
Sbjct: 167 FVCVLNLCSKRLD----FELGRQIHACIVKDNWR-NLIVDSALVCFYAQCGDLSGAFHAF 221
Query: 70 DEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVC-VLKACV 128
D+MP RD W MI E +++F++MM P VC VLKAC
Sbjct: 222 DQMPERDVVCWTTMITACSQQGRGTEALSMFSQMMFNTSS------PNEFTVCSVLKACG 275
Query: 129 CTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTA 188
+E GKQ+HG + K ++ + SL+ Y K + D+ VF +K+ NTV WT+
Sbjct: 276 EEKALEFGKQLHGAIIKKMFKEDVFIGTSLVGMYAKCGEILDSRKVFDGMKKRNTVTWTS 335
Query: 189 KIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKI 248
I R G + + F+ M R +I N+ T S+L+ACG + G+++HA I+K
Sbjct: 336 IIAGYARNGQGEEAISLFRVMKRRKIFANNLTVVSILRACGSTRNL-LMGKEVHAQIMKN 394
Query: 249 GLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKF 308
++S+ Y+ LV Y KC A +V + + +++ SW A++ GY G EA +F
Sbjct: 395 SMQSNIYIGSTLVWFYCKCEEHPFASKVLQNM-PLRDVVSWTAIISGYTSLGHEPEALEF 453
Query: 309 LYLMKASGIQIQESLINDLRIACSSISA 336
L M G++ + AC+ + A
Sbjct: 454 LKEMLEEGVEPNPFTYSSALKACAHLEA 481
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 87/287 (30%), Positives = 139/287 (48%), Gaps = 14/287 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK---R 106
N L+ + G+L AR++FD+MP R+ SW ++ GY E + LF + ++ R
Sbjct: 102 NNLISAYSRFGKLVEARKVFDKMPERNVVSWTAVVNGYSRYGFDDEALRLFDDCIENGVR 161
Query: 107 KKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166
G VCVL C ++ ELG+Q+H + K + RN+ + +L+ FY +
Sbjct: 162 ANGKTF--------VCVLNLCSKRLDFELGRQIHACIVK-DNWRNLIVDSALVCFYAQCG 212
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
L A F Q+ + V WT I ++G + + F +M N +T SVLK
Sbjct: 213 DLSGAFHAFDQMPERDVVCWTTMITACSQQGRGTEALSMFSQMMFNTSSPNEFTVCSVLK 272
Query: 227 ACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
ACG + G+Q+H I+K + D ++ LV MY KC + D+ +VF+ + K+N
Sbjct: 273 ACGE-EKALEFGKQLHGAIIKKMFKEDVFIGTSLVGMYAKCGEILDSRKVFDGM-KKRNT 330
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSS 333
+W +++ GY RNG EA +MK I + + AC S
Sbjct: 331 VTWTSIIAGYARNGQGEEAISLFRVMKRRKIFANNLTVVSILRACGS 377
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 87/199 (43%), Gaps = 11/199 (5%)
Query: 34 NHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADY 93
N ++ + I TL++ + C + A ++ MPLRD SW +I GY +
Sbjct: 394 NSMQSNIYIGSTLVWF------YCKCEEHPFASKVLQNMPLRDVVSWTAIISGYTSLGHE 447
Query: 94 QECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNIS 153
E + EM++ + + LKAC + GK +H + K + N+
Sbjct: 448 PEALEFLKEMLEEGVEPNPFTYSS-----ALKACAHLEAILQGKLIHSSVNKTLALSNVF 502
Query: 154 LTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRER 213
+ +LIN Y K + +A VF + + N V W A IV R G + M E
Sbjct: 503 VGSALINMYAKCGYVSEAIQVFDSMPQRNLVSWKAMIVGYARNGLCGEALKLMYRMQAEG 562
Query: 214 IKKNSYTFSSVLKACGGVD 232
I+ + Y ++VL ACG V+
Sbjct: 563 IEVDDYILTTVLSACGDVE 581
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 77/176 (43%), Gaps = 3/176 (1%)
Query: 137 KQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCRE 196
++VH ++FK + + +LI+ Y +F L +A VF ++ N V WTA + R
Sbjct: 83 RRVHAVVFKCLDNSVTYVNNNLISAYSRFGKLVEARKVFDKMPERNVVSWTAVVNGYSRY 142
Query: 197 GHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYV 256
G + F + ++ N TF VL C D GRQ+HA IVK + V
Sbjct: 143 GFDDEALRLFDDCIENGVRANGKTFVCVLNLCSK-RLDFELGRQIHACIVKDNWR-NLIV 200
Query: 257 QCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLM 312
LV Y +C L A F+ + ++++ W M+ + G EA M
Sbjct: 201 DSALVCFYAQCGDLSGAFHAFDQM-PERDVVCWTTMITACSQQGRGTEALSMFSQM 255
>gi|449440387|ref|XP_004137966.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
mitochondrial-like [Cucumis sativus]
Length = 792
Score = 160 bits (406), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 99/327 (30%), Positives = 164/327 (50%), Gaps = 9/327 (2%)
Query: 7 PITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTAR 66
P+ + YT LI C+ + ++ H+ N +P ++ N +L M+ CG L AR
Sbjct: 95 PLKSVTYTHLINACSSLRSLEHGRKIHRHMLT-CNYQPDMILQNHILSMYGKCGSLKEAR 153
Query: 67 QLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKA 126
+FD MPL++ SW MI GY + ITL+ +M+ + GH+ F IV K+
Sbjct: 154 NMFDSMPLKNVVSWTSMISGYSRYGEEDNAITLYVQML--RSGHIPDHFTFGSIV---KS 208
Query: 127 CVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVW 186
C + +L +Q+H + K ++ +LI+ Y KF + DA VFS++ + + W
Sbjct: 209 CSGLDDFKLARQLHAHVLKSEFGADLIAQNALISMYTKFSQMADAINVFSRIIIKDLISW 268
Query: 187 TAKIVNNCREGHFHQVFNDFKEMGRERI-KKNSYTFSSVLKACGGVDDDGNCGRQMHANI 245
+ I + G+ + F+EM + + + N + F S AC + + +CGRQ+H
Sbjct: 269 GSMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVFGSAFSACSKLLEP-DCGRQIHGLC 327
Query: 246 VKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEA 305
+K GL SD + C L DMY KC L A VF I +K ++ +WNA++ G+ E+
Sbjct: 328 IKFGLGSDLFAGCSLCDMYAKCGFLESARTVFYHI-EKPDLVAWNAIIAGFASVSNAKES 386
Query: 306 TKFLYLMKASGIQIQESLINDLRIACS 332
+ F M+ +G+ + + L ACS
Sbjct: 387 SSFFSQMRHTGLVPNDVTVLSLLCACS 413
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 83/281 (29%), Positives = 139/281 (49%), Gaps = 8/281 (2%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+ CG L++AR +F + D +W +I G+ V++ +E + F++M H LV
Sbjct: 345 MYAKCGFLESARTVFYHIEKPDLVAWNAIIAGFASVSNAKESSSFFSQMR-----HTGLV 399
Query: 115 FPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFV 174
++ +L AC + + G QVH + K+G + +I + SL++ Y K L DA V
Sbjct: 400 PNDVTVLSLLCACSEPVMLNHGIQVHSYIVKMGFNLDIPVCNSLLSMYSKCSNLNDALQV 459
Query: 175 FSQL-KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDD 233
F + + + V W + ++ +V K M RIK + T ++VL + G +
Sbjct: 460 FEDIGNKADIVSWNTLLTACLQQNQAGEVLRLTKLMFASRIKPDHVTLTNVLVSSGQIAS 519
Query: 234 DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
G Q+H I+K GL D V L++MY KC L A ++F+ I +I SW++++
Sbjct: 520 -YEVGSQIHCFIMKSGLNLDISVSNALINMYTKCGSLECARKMFDSI-GNPDIISWSSLI 577
Query: 294 VGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
VGY + G EA + M+ G++ E + ACS I
Sbjct: 578 VGYAQAGCGKEAFELFRTMRGLGVKPNEITFVGILTACSHI 618
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 89/327 (27%), Positives = 149/327 (45%), Gaps = 6/327 (1%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
+ ++K C+ D A +L H+ K L+ N L+ M+ Q+ A +F +
Sbjct: 202 FGSIVKSCSGLDDFKLARQLHAHVLKS-EFGADLIAQNALISMYTKFSQMADAINVFSRI 260
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN 132
++D SW MI G+ + E + F EM+ + + ++ AC +
Sbjct: 261 IIKDLISWGSMIAGFSQLGYELEALCHFREMLSQS----VYQPNEFVFGSAFSACSKLLE 316
Query: 133 MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192
+ G+Q+HGL K G ++ SL + Y K LE A VF +++ + V W A I
Sbjct: 317 PDCGRQIHGLCIKFGLGSDLFAGCSLCDMYAKCGFLESARTVFYHIEKPDLVAWNAIIAG 376
Query: 193 NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLES 252
+ + + F +M + N T S+L AC N G Q+H+ IVK+G
Sbjct: 377 FASVSNAKESSSFFSQMRHTGLVPNDVTVLSLLCACSE-PVMLNHGIQVHSYIVKMGFNL 435
Query: 253 DEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLM 312
D V L+ MY KC L DA +VFE I +K +I SWN +L ++ E + LM
Sbjct: 436 DIPVCNSLLSMYSKCSNLNDALQVFEDIGNKADIVSWNTLLTACLQQNQAGEVLRLTKLM 495
Query: 313 KASGIQIQESLINDLRIACSSISASKI 339
AS I+ + ++ ++ I++ ++
Sbjct: 496 FASRIKPDHVTLTNVLVSSGQIASYEV 522
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 105/213 (49%), Gaps = 3/213 (1%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
++ AC ++E G+++H + ++ L +++ YGK L++A +F + N
Sbjct: 104 LINACSSLRSLEHGRKIHRHMLTCNYQPDMILQNHILSMYGKCGSLKEARNMFDSMPLKN 163
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
V WT+ I R G + +M R + +TF S++K+C G+ DD RQ+H
Sbjct: 164 VVSWTSMISGYSRYGEEDNAITLYVQMLRSGHIPDHFTFGSIVKSCSGL-DDFKLARQLH 222
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
A+++K +D Q L+ MY K + DA VF I+ K++ SW +M+ G+ + G
Sbjct: 223 AHVLKSEFGADLIAQNALISMYTKFSQMADAINVFSRII-IKDLISWGSMIAGFSQLGYE 281
Query: 303 VEAT-KFLYLMKASGIQIQESLINDLRIACSSI 334
+EA F ++ S Q E + ACS +
Sbjct: 282 LEALCHFREMLSQSVYQPNEFVFGSAFSACSKL 314
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 113/252 (44%), Gaps = 16/252 (6%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLR-DFNSWAVMIVGYVDVADYQECITLFAEMM--KR 106
N LL M+ C L+ A Q+F+++ + D SW ++ + E + L M +
Sbjct: 441 NSLLSMYSKCSNLNDALQVFEDIGNKADIVSWNTLLTACLQQNQAGEVLRLTKLMFASRI 500
Query: 107 KKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166
K H+ L VL + + E+G Q+H + K G + +IS++ +LIN Y K
Sbjct: 501 KPDHVTLT-------NVLVSSGQIASYEVGSQIHCFIMKSGLNLDISVSNALINMYTKCG 553
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
LE A +F + + + W++ IV + G + F F+ M +K N TF +L
Sbjct: 554 SLECARKMFDSIGNPDIISWSSLIVGYAQAGCGKEAFELFRTMRGLGVKPNEITFVGILT 613
Query: 227 AC---GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
AC G V++ R M + +I + E+ C +VD+ + L AE + +
Sbjct: 614 ACSHIGMVEEGLKLYRTMQED-YRIS-PTKEHCSC-MVDLLARAGCLDVAEDFIKQMPFV 670
Query: 284 KNIASWNAMLVG 295
++ W +L
Sbjct: 671 PDVVVWKTLLAA 682
>gi|449518693|ref|XP_004166371.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
mitochondrial-like [Cucumis sativus]
Length = 792
Score = 160 bits (406), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 99/327 (30%), Positives = 164/327 (50%), Gaps = 9/327 (2%)
Query: 7 PITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTAR 66
P+ + YT LI C+ + ++ H+ N +P ++ N +L M+ CG L AR
Sbjct: 95 PLKSVTYTHLINACSSLRSLEHGRKIHRHMLT-CNYQPDMILQNHILSMYGKCGSLKEAR 153
Query: 67 QLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKA 126
+FD MPL++ SW MI GY + ITL+ +M+ + GH+ F IV K+
Sbjct: 154 NMFDSMPLKNVVSWTSMISGYSRYGEEDNAITLYVQML--RSGHIPDHFTFGSIV---KS 208
Query: 127 CVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVW 186
C + +L +Q+H + K ++ +LI+ Y KF + DA VFS++ + + W
Sbjct: 209 CSGLDDFKLARQLHAHVLKSEFGADLIAQNALISMYTKFSQMADAINVFSRIIIKDLISW 268
Query: 187 TAKIVNNCREGHFHQVFNDFKEMGRERI-KKNSYTFSSVLKACGGVDDDGNCGRQMHANI 245
+ I + G+ + F+EM + + + N + F S AC + + +CGRQ+H
Sbjct: 269 GSMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVFGSAFSACSKLLEP-DCGRQIHGLC 327
Query: 246 VKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEA 305
+K GL SD + C L DMY KC L A VF I +K ++ +WNA++ G+ E+
Sbjct: 328 IKFGLGSDLFAGCSLCDMYAKCGFLESARTVFYHI-EKPDLVAWNAIIAGFASVSNAKES 386
Query: 306 TKFLYLMKASGIQIQESLINDLRIACS 332
+ F M+ +G+ + + L ACS
Sbjct: 387 SSFFSQMRHTGLVPNDVTVLSLLCACS 413
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 83/281 (29%), Positives = 139/281 (49%), Gaps = 8/281 (2%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+ CG L++AR +F + D +W +I G+ V++ +E + F++M H LV
Sbjct: 345 MYAKCGFLESARTVFYHIEKPDLVAWNAIIAGFASVSNAKESSSFFSQMR-----HTGLV 399
Query: 115 FPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFV 174
++ +L AC + + G QVH + K+G + +I + SL++ Y K L DA V
Sbjct: 400 PNDVTVLSLLCACSEPVMLNHGIQVHSYIVKMGFNLDIPVCNSLLSMYSKCSNLNDALQV 459
Query: 175 FSQL-KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDD 233
F + + + V W + ++ +V K M RIK + T ++VL + G +
Sbjct: 460 FEDIGNKADIVSWNTLLTACLQQNQAGEVLRLTKLMFASRIKPDHVTLTNVLVSSGQIAS 519
Query: 234 DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
G Q+H I+K GL D V L++MY KC L A ++F+ I +I SW++++
Sbjct: 520 -YEVGSQIHCFIMKSGLNLDISVSNALINMYTKCGSLECARKMFDSI-GNPDIISWSSLI 577
Query: 294 VGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
VGY + G EA + M+ G++ E + ACS I
Sbjct: 578 VGYAQAGCGKEAFELFRTMRGLGVKPNEITFVGILTACSHI 618
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 89/327 (27%), Positives = 149/327 (45%), Gaps = 6/327 (1%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
+ ++K C+ D A +L H+ K L+ N L+ M+ Q+ A +F +
Sbjct: 202 FGSIVKSCSGLDDFKLARQLHAHVLKS-EFGADLIAQNALISMYTKFSQMADAINVFSRI 260
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN 132
++D SW MI G+ + E + F EM+ + + ++ AC +
Sbjct: 261 IIKDLISWGSMIAGFSQLGYELEALCHFREMLSQS----VYQPNEFVFGSAFSACSKLLE 316
Query: 133 MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192
+ G+Q+HGL K G ++ SL + Y K LE A VF +++ + V W A I
Sbjct: 317 PDCGRQIHGLCIKFGLGSDLFAGCSLCDMYAKCGFLESARTVFYHIEKPDLVAWNAIIAG 376
Query: 193 NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLES 252
+ + + F +M + N T S+L AC N G Q+H+ IVK+G
Sbjct: 377 FASVSNAKESSSFFSQMRHTGLVPNDVTVLSLLCACSE-PVMLNHGIQVHSYIVKMGFNL 435
Query: 253 DEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLM 312
D V L+ MY KC L DA +VFE I +K +I SWN +L ++ E + LM
Sbjct: 436 DIPVCNSLLSMYSKCSNLNDALQVFEDIGNKADIVSWNTLLTACLQQNQAGEVLRLTKLM 495
Query: 313 KASGIQIQESLINDLRIACSSISASKI 339
AS I+ + ++ ++ I++ ++
Sbjct: 496 FASRIKPDHVTLTNVLVSSGQIASYEV 522
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 105/213 (49%), Gaps = 3/213 (1%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
++ AC ++E G+++H + ++ L +++ YGK L++A +F + N
Sbjct: 104 LINACSSLRSLEHGRKIHRHMLTCNYQPDMILQNHILSMYGKCGSLKEARNMFDSMPLKN 163
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
V WT+ I R G + +M R + +TF S++K+C G+ DD RQ+H
Sbjct: 164 VVSWTSMISGYSRYGEEDNAITLYVQMLRSGHIPDHFTFGSIVKSCSGL-DDFKLARQLH 222
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
A+++K +D Q L+ MY K + DA VF I+ K++ SW +M+ G+ + G
Sbjct: 223 AHVLKSEFGADLIAQNALISMYTKFSQMADAINVFSRII-IKDLISWGSMIAGFSQLGYE 281
Query: 303 VEAT-KFLYLMKASGIQIQESLINDLRIACSSI 334
+EA F ++ S Q E + ACS +
Sbjct: 282 LEALCHFREMLSQSVYQPNEFVFGSAFSACSKL 314
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 111/252 (44%), Gaps = 16/252 (6%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLR-DFNSWAVMIVGYVDVADYQECITLFAEMMKR-- 106
N LL M+ C L+ A Q+F+++ + D SW ++ + E + L M
Sbjct: 441 NSLLSMYSKCSNLNDALQVFEDIGNKADIVSWNTLLTACLQQNQAGEVLRLTKLMFASRI 500
Query: 107 KKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166
K H+ L VL + + E+G Q+H + K G + +IS++ +LIN Y K
Sbjct: 501 KPDHVTLT-------NVLVSSGQIASYEVGSQIHCFIMKSGLNLDISVSNALINMYTKCG 553
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
LE A +F + + + W++ IV + G + F F+ M +K N TF +L
Sbjct: 554 SLECARKMFDSIGNPDIISWSSLIVGYAQAGCGKEAFELFRTMRGLGVKPNEITFVGILT 613
Query: 227 AC---GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
AC G V++ R M + +I + E+ C +VD+ + L AE +
Sbjct: 614 ACSHIGMVEEGLKLYRTMQED-YRIS-PTKEHCSC-MVDLLARAGCLDVAEDFIRQMPFV 670
Query: 284 KNIASWNAMLVG 295
++ W +L
Sbjct: 671 PDVVVWKTLLAA 682
>gi|225460338|ref|XP_002280412.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g13880-like [Vitis vinifera]
Length = 802
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 106/339 (31%), Positives = 165/339 (48%), Gaps = 13/339 (3%)
Query: 4 LCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLD 63
L LP+ + YT L+ +C+ + S +L + + KP L LN LL M+ CG+ D
Sbjct: 13 LGLPLDSVTYTKLV-QCSTRTGSLIHGKLAHMHMIKTCFKPCLFLLNNLLYMYCKCGETD 71
Query: 64 TARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCV 123
A++LFD MP R+ SW +I GY + Y E + LF E L +
Sbjct: 72 VAKKLFDRMPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSD-----LRLDKFTFSNA 126
Query: 124 LKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNT 183
L C T+++ LG+ +H L+ G + LT SLI+ Y K ++ A VF ++
Sbjct: 127 LSVCGRTLDLRLGRLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDS 186
Query: 184 VVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG-VDDDGNCGRQMH 242
V W + I R G ++ +M R + NSY S LKACG CG+ +H
Sbjct: 187 VSWNSLIAGYVRIGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLH 246
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIR---- 298
VK+GL+ D V L+D Y K L DA ++F+L+ D N+ +NAM+ G+++
Sbjct: 247 GCAVKLGLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPD-PNVVMYNAMIAGFLQMETM 305
Query: 299 -NGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+ EA + M++ G++ E + + ACS+I A
Sbjct: 306 ADEFANEAMYLFFEMQSRGMKPSEFTFSSILKACSTIEA 344
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 89/301 (29%), Positives = 154/301 (51%), Gaps = 14/301 (4%)
Query: 45 TLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMM 104
+L N L+ M+ CG++D AR +F+ D SW +I GYV + E + L +M+
Sbjct: 154 PVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRIGSNDEMLRLLVKML 213
Query: 105 KRKKGHMLLVFPAWIIVCVLKACVC--TMNMELGKQVHGLLFKLGSSRNISLTGSLINFY 162
+ L ++ + LKAC + ++E GK +HG KLG ++ + +L++ Y
Sbjct: 214 RHG-----LNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDVVVGTALLDTY 268
Query: 163 GKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFND-----FKEMGRERIKKN 217
K LEDA +F + N V++ A I + F + F EM +K +
Sbjct: 269 AKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFFEMQSRGMKPS 328
Query: 218 SYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVF 277
+TFSS+LKAC ++ CG+Q+HA I K L+SDE++ LV++Y + D + F
Sbjct: 329 EFTFSSILKACSTIEA-FECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGSIEDGLKCF 387
Query: 278 ELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISAS 337
K ++ SW +++VG+++NG + + + SG + E I+ + AC++++A
Sbjct: 388 H-STPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSACANLAAV 446
Query: 338 K 338
K
Sbjct: 447 K 447
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 80/286 (27%), Positives = 124/286 (43%), Gaps = 12/286 (4%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDV---AD--YQECITLFAEMMKR 106
LL + G L+ A ++F MP + + MI G++ + AD E + LF EM R
Sbjct: 264 LLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFFEMQSR 323
Query: 107 KKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166
F + +LKAC E GKQ+H +FK + + +L+ Y
Sbjct: 324 GMKPSEFTFSS-----ILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSG 378
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
+ED F + + V WT+ IV + + G F F E+ K + +T S +L
Sbjct: 379 SIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLS 438
Query: 227 ACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
AC + G Q+HA +K G+ + +Q + MY KC + A F+ +I
Sbjct: 439 ACANLAAV-KSGEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKE-TKNPDI 496
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
SW+ M+ ++G EA LMK SGI + +ACS
Sbjct: 497 VSWSVMISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVACS 542
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 95/204 (46%), Gaps = 2/204 (0%)
Query: 136 GKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCR 195
GK H + K + L +L+ Y K + A +F ++ + N V W + I +
Sbjct: 38 GKLAHMHMIKTCFKPCLFLLNNLLYMYCKCGETDVAKKLFDRMPKRNVVSWNSLISGYTQ 97
Query: 196 EGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEY 255
G +H+V N FKE ++ + +TFS+ L CG D GR +HA I GL
Sbjct: 98 MGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDL-RLGRLIHALITVSGLGGPVL 156
Query: 256 VQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKAS 315
+ L+DMY KC + A VFE D+ + SWN+++ GY+R G E + L M
Sbjct: 157 LTNSLIDMYCKCGRIDWARLVFE-SADELDSVSWNSLIAGYVRIGSNDEMLRLLVKMLRH 215
Query: 316 GIQIQESLINDLRIACSSISASKI 339
G+ + + AC S +S I
Sbjct: 216 GLNLNSYALGSALKACGSNFSSSI 239
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 89/355 (25%), Positives = 144/355 (40%), Gaps = 60/355 (16%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRV---NIKPTLLFLNRLLLMHVSCGQLDTARQLF 69
++ ++K C+ + AFE I ++ N++ N L+ ++ G ++ + F
Sbjct: 332 FSSILKACS----TIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGSIEDGLKCF 387
Query: 70 DEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMM--KRKKGHMLLVFPAWIIVCVLKAC 127
P D SW +IVG+V ++ +TLF E++ RK + I +L AC
Sbjct: 388 HSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDE-------FTISIMLSAC 440
Query: 128 VCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWT 187
++ G+Q+H K G + S I Y K ++ A+ F + K + V W+
Sbjct: 441 ANLAAVKSGEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKETKNPDIVSWS 500
Query: 188 AKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--GG--------------- 230
I +N + G + + F+ M I N TF VL AC GG
Sbjct: 501 VMISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVACSHGGLVEEGLRYFEIMKKD 560
Query: 231 -------------VDDDGNCGRQMHAN--IVKIGLESDEYVQCGLVDMYGKCRL------ 269
VD G GR A I+ G E D + L+ CR+
Sbjct: 561 HGITPNVKHSACIVDLLGRAGRLAEAESFIMDSGFEGDPVMWRSLLS---ACRVHKATDT 617
Query: 270 -LRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESL 323
R AERV EL + + AS+ + Y G+ + AT+ LMK G++ + L
Sbjct: 618 GKRVAERVIEL--EPEAAASYVLLYNIYNDAGIQMPATEIRNLMKDRGVKKEPGL 670
>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
Length = 795
Score = 157 bits (396), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 92/298 (30%), Positives = 151/298 (50%), Gaps = 15/298 (5%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R I+ +L +N L+ M+ CG ++TA +LF+ MP+RD SW +I GY + + E +
Sbjct: 249 RSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALA 308
Query: 99 LFAEMMKRKKGHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGS 157
F M R + P I +V VL AC +E G+Q+HG + G N + +
Sbjct: 309 FFNRMQVRG------IKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNA 362
Query: 158 LINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKN 217
L+N Y K + A +F ++ + N V W A I + GH H+ F EM + IK +
Sbjct: 363 LVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPD 422
Query: 218 SYTFSSVLKACG---GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAE 274
S+ SVL AC ++ G+Q+H ++ G ES+ V GLVD+Y KC + A+
Sbjct: 423 SFAIVSVLPACAHFLALEQ----GKQIHGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQ 478
Query: 275 RVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
++FE + ++++ SW M++ Y +G +A M+ +G ++ + ACS
Sbjct: 479 KLFERM-PEQDVVSWTTMILAYGIHGHGEDALALFSKMQETGTKLDHIAFTAILTACS 535
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 97/322 (30%), Positives = 151/322 (46%), Gaps = 10/322 (3%)
Query: 12 MYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDE 71
++ +IK C Q D ++ I R + ++ L M+ CG L+ ARQ+FD
Sbjct: 122 VFLSVIKACGSQSDLQAGRKVHEDIIAR-GFESDVIVGTALASMYTKCGSLENARQVFDR 180
Query: 72 MPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCT 130
MP RD SW +I GY E + LF+EM + P + +V V+ C
Sbjct: 181 MPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQVNG------IKPNSSTLVSVMPVCAHL 234
Query: 131 MNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKI 190
+ +E GKQ+H + G ++ + L+N Y K + A +F ++ + W A I
Sbjct: 235 LALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAII 294
Query: 191 VNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGL 250
H+ F M IK NS T SVL AC + G+Q+H ++ G
Sbjct: 295 GGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQ-GQQIHGYAIRSGF 353
Query: 251 ESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLY 310
ES++ V LV+MY KC + A ++FE + KKN+ +WNA++ GY ++G EA
Sbjct: 354 ESNDVVGNALVNMYAKCGNVNSAYKLFERM-PKKNVVAWNAIISGYSQHGHPHEALALFI 412
Query: 311 LMKASGIQIQESLINDLRIACS 332
M+A GI+ I + AC+
Sbjct: 413 EMQAQGIKPDSFAIVSVLPACA 434
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/257 (29%), Positives = 129/257 (50%), Gaps = 7/257 (2%)
Query: 80 WAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQV 139
W I+GYV + + + L+ +M + LVF + V+KAC +++ G++V
Sbjct: 88 WKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVF-----LSVIKACGSQSDLQAGRKV 142
Query: 140 HGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHF 199
H + G ++ + +L + Y K LE+A VF ++ + + V W A I + G
Sbjct: 143 HEDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQP 202
Query: 200 HQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCG 259
++ F EM IK NS T SV+ C + G+Q+H ++ G+ESD V G
Sbjct: 203 YEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQ-GKQIHCYAIRSGIESDVLVVNG 261
Query: 260 LVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQI 319
LV+MY KC + A ++FE + +++ASWNA++ GY N + EA F M+ GI+
Sbjct: 262 LVNMYAKCGNVNTAHKLFERM-PIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKP 320
Query: 320 QESLINDLRIACSSISA 336
+ + AC+ + A
Sbjct: 321 NSITMVSVLPACAHLFA 337
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 88/170 (51%), Gaps = 3/170 (1%)
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
C F + + R+N VVW I+ + G +++ + +M R I + F SV+K
Sbjct: 70 CANQTQFTQTDI-RNNAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIK 128
Query: 227 ACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
ACG D GR++H +I+ G ESD V L MY KC L +A +VF+ + K+++
Sbjct: 129 ACGS-QSDLQAGRKVHEDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRM-PKRDV 186
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
SWNA++ GY +NG EA M+ +GI+ S + + C+ + A
Sbjct: 187 VSWNAIIAGYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLA 236
>gi|225457865|ref|XP_002279206.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26540
[Vitis vinifera]
Length = 711
Score = 157 bits (396), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 103/360 (28%), Positives = 166/360 (46%), Gaps = 37/360 (10%)
Query: 6 LPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTA 65
+P +Y L + C+ A ++ +H+ + P + LNR + + C LD A
Sbjct: 56 VPFPFSLYARLFQICSSNLAIVEARKVESHLIT-FSPAPPIFLLNRAIETYGKCSCLDDA 114
Query: 66 RQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLK 125
R+LF+EMP RD SW MI Y ++ + LF+ M + + F + VL
Sbjct: 115 RELFEEMPQRDGGSWNAMITAYAQGGCAEKALWLFSRMNRLGIWANEITFAS-----VLG 169
Query: 126 ACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVV 185
+C + + L KQ+HGL+ K G N+ L SL++ YGK R + DA +F +++ N +
Sbjct: 170 SCATVLALFLSKQIHGLIVKYGFCWNVILGSSLVDIYGKCRVMSDARRMFDEIENPNAIS 229
Query: 186 WTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANI 245
W + G+ + F +M R I+ ++TFS+ L AC + G Q+H
Sbjct: 230 WNVIVRRYLEMGNEKEAVVMFFKMIRANIRPLNFTFSNALIACSSISALQE-GIQIHGVA 288
Query: 246 VKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK---------------------- 283
++IG + DE V L+DMY KC L A R+FEL K
Sbjct: 289 IRIGYDEDEVVSSSLIDMYAKCGDLESACRIFELPSSKNLISWTSIVSGYAMSGQTREAR 348
Query: 284 --------KNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
+++ SWNAML GY + EA +F++LM+ + I + + C+ +S
Sbjct: 349 VLFDEMPERSVISWNAMLAGYTHFCQWEEALEFVFLMRKATQDIDHVTVGLILNVCAGLS 408
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 78/273 (28%), Positives = 130/273 (47%), Gaps = 9/273 (3%)
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI 119
GQ AR LFDEMP R SW M+ GY ++E + F +M++ + V
Sbjct: 342 GQTREARVLFDEMPERSVISWNAMLAGYTHFCQWEEALE-FVFLMRKATQDIDHV----T 396
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
+ +L C ++E GKQVHG +++ G N+ + +L++ YGK L F Q+
Sbjct: 397 VGLILNVCAGLSDVESGKQVHGFIYRHGLYSNLFVGNALLHMYGKCGNLRSTRLWFYQMS 456
Query: 180 R-HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCG 238
+ + W A + ++ R G + F EM E + +T ++L AC + G
Sbjct: 457 HWRDRISWNALLTSHARHGLSEEAMTIFGEMQWE-TTPSKFTLGTLLSACANIFALEQ-G 514
Query: 239 RQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIR 298
+Q+H +++ G E D + LVDMY KCR L A +VF+ +++ WN+M++G
Sbjct: 515 KQIHGFMIRNGYEIDVVARGALVDMYSKCRCLEYALKVFKE-APSRDLILWNSMILGCCH 573
Query: 299 NGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
NG + LM+ G++ + + C
Sbjct: 574 NGRGRDVLGLFGLMEEEGVKPDHITFQGILLGC 606
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 105/222 (47%), Gaps = 2/222 (0%)
Query: 115 FPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFV 174
FP + + + C + + ++V L + I L I YGK CL+DA +
Sbjct: 58 FPFSLYARLFQICSSNLAIVEARKVESHLITFSPAPPIFLLNRAIETYGKCSCLDDAREL 117
Query: 175 FSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDD 234
F ++ + + W A I + G + F M R I N TF+SVL +C V
Sbjct: 118 FEEMPQRDGGSWNAMITAYAQGGCAEKALWLFSRMNRLGIWANEITFASVLGSCATVLAL 177
Query: 235 GNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLV 294
+Q+H IVK G + + LVD+YGKCR++ DA R+F+ I + N SWN ++
Sbjct: 178 -FLSKQIHGLIVKYGFCWNVILGSSLVDIYGKCRVMSDARRMFDEI-ENPNAISWNVIVR 235
Query: 295 GYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
Y+ G EA + M + I+ ++ IACSSISA
Sbjct: 236 RYLEMGNEKEAVVMFFKMIRANIRPLNFTFSNALIACSSISA 277
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 81/318 (25%), Positives = 139/318 (43%), Gaps = 38/318 (11%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+ L+ ++ C + AR++FDE+ + SW V++ Y+++ + +E + +F +M++
Sbjct: 200 SSLVDIYGKCRVMSDARRMFDEIENPNAISWNVIVRRYLEMGNEKEAVVMFFKMIRANIR 259
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ F +I AC ++ G Q+HG+ ++G + ++ SLI+ Y K LE
Sbjct: 260 PLNFTFSNALI-----ACSSISALQEGIQIHGVAIRIGYDEDEVVSSSLIDMYAKCGDLE 314
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMG-RERIKKNS---------- 218
A +F N + WT+ + G + F EM R I N+
Sbjct: 315 SACRIFELPSSKNLISWTSIVSGYAMSGQTREARVLFDEMPERSVISWNAMLAGYTHFCQ 374
Query: 219 --------------------YTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQC 258
T +L C G+ D G+Q+H I + GL S+ +V
Sbjct: 375 WEEALEFVFLMRKATQDIDHVTVGLILNVCAGLSDV-ESGKQVHGFIYRHGLYSNLFVGN 433
Query: 259 GLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
L+ MYGKC LR F + ++ SWNA+L + R+GL EA M+
Sbjct: 434 ALLHMYGKCGNLRSTRLWFYQMSHWRDRISWNALLTSHARHGLSEEAMTIFGEMQWETTP 493
Query: 319 IQESLINDLRIACSSISA 336
+ +L L AC++I A
Sbjct: 494 SKFTL-GTLLSACANIFA 510
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 88/192 (45%), Gaps = 9/192 (4%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMP-LRDFNSWAVMIVGYVDVADYQECI 97
R + L N LL M+ CG L + R F +M RD SW ++ + +E +
Sbjct: 422 RHGLYSNLFVGNALLHMYGKCGNLRSTRLWFYQMSHWRDRISWNALLTSHARHGLSEEAM 481
Query: 98 TLFAEMMKRKKGHMLLVFPA-WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTG 156
T+F EM P+ + + +L AC +E GKQ+HG + + G ++ G
Sbjct: 482 TIFGEMQWETT-------PSKFTLGTLLSACANIFALEQGKQIHGFMIRNGYEIDVVARG 534
Query: 157 SLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKK 216
+L++ Y K RCLE A VF + + ++W + I+ C G V F M E +K
Sbjct: 535 ALVDMYSKCRCLEYALKVFKEAPSRDLILWNSMILGCCHNGRGRDVLGLFGLMEEEGVKP 594
Query: 217 NSYTFSSVLKAC 228
+ TF +L C
Sbjct: 595 DHITFQGILLGC 606
Score = 38.1 bits (87), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 62/149 (41%), Gaps = 7/149 (4%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ C L+ A ++F E P RD W MI+G ++ + LF M +
Sbjct: 536 LVDMYSKCRCLEYALKVFKEAPSRDLILWNSMILGCCHNGRGRDVLGLFGLMEEEGVKPD 595
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQ-VHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
+ F +L C+C LG + + + K + S+I YG+ +++
Sbjct: 596 HITFQG-----ILLGCICEGLAGLGTEYFNSMSNKYCIIPRLEHYESMIELYGRHGFMDE 650
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCRE-GH 198
+ ++ TV ++ N C E GH
Sbjct: 651 LEDFIKRMPFEPTVAMLTRVFNACSEHGH 679
>gi|302142721|emb|CBI19924.3| unnamed protein product [Vitis vinifera]
Length = 912
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 103/360 (28%), Positives = 166/360 (46%), Gaps = 37/360 (10%)
Query: 6 LPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTA 65
+P +Y L + C+ A ++ +H+ + P + LNR + + C LD A
Sbjct: 56 VPFPFSLYARLFQICSSNLAIVEARKVESHLIT-FSPAPPIFLLNRAIETYGKCSCLDDA 114
Query: 66 RQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLK 125
R+LF+EMP RD SW MI Y ++ + LF+ M + + F + VL
Sbjct: 115 RELFEEMPQRDGGSWNAMITAYAQGGCAEKALWLFSRMNRLGIWANEITFAS-----VLG 169
Query: 126 ACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVV 185
+C + + L KQ+HGL+ K G N+ L SL++ YGK R + DA +F +++ N +
Sbjct: 170 SCATVLALFLSKQIHGLIVKYGFCWNVILGSSLVDIYGKCRVMSDARRMFDEIENPNAIS 229
Query: 186 WTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANI 245
W + G+ + F +M R I+ ++TFS+ L AC + G Q+H
Sbjct: 230 WNVIVRRYLEMGNEKEAVVMFFKMIRANIRPLNFTFSNALIACSSISALQE-GIQIHGVA 288
Query: 246 VKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK---------------------- 283
++IG + DE V L+DMY KC L A R+FEL K
Sbjct: 289 IRIGYDEDEVVSSSLIDMYAKCGDLESACRIFELPSSKNLISWTSIVSGYAMSGQTREAR 348
Query: 284 --------KNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
+++ SWNAML GY + EA +F++LM+ + I + + C+ +S
Sbjct: 349 VLFDEMPERSVISWNAMLAGYTHFCQWEEALEFVFLMRKATQDIDHVTVGLILNVCAGLS 408
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 78/273 (28%), Positives = 130/273 (47%), Gaps = 9/273 (3%)
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI 119
GQ AR LFDEMP R SW M+ GY ++E + F +M++ + V
Sbjct: 342 GQTREARVLFDEMPERSVISWNAMLAGYTHFCQWEEALE-FVFLMRKATQDIDHV----T 396
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
+ +L C ++E GKQVHG +++ G N+ + +L++ YGK L F Q+
Sbjct: 397 VGLILNVCAGLSDVESGKQVHGFIYRHGLYSNLFVGNALLHMYGKCGNLRSTRLWFYQMS 456
Query: 180 R-HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCG 238
+ + W A + ++ R G + F EM E + +T ++L AC + G
Sbjct: 457 HWRDRISWNALLTSHARHGLSEEAMTIFGEMQWE-TTPSKFTLGTLLSACANIFALEQ-G 514
Query: 239 RQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIR 298
+Q+H +++ G E D + LVDMY KCR L A +VF+ +++ WN+M++G
Sbjct: 515 KQIHGFMIRNGYEIDVVARGALVDMYSKCRCLEYALKVFKE-APSRDLILWNSMILGCCH 573
Query: 299 NGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
NG + LM+ G++ + + C
Sbjct: 574 NGRGRDVLGLFGLMEEEGVKPDHITFQGILLGC 606
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 105/222 (47%), Gaps = 2/222 (0%)
Query: 115 FPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFV 174
FP + + + C + + ++V L + I L I YGK CL+DA +
Sbjct: 58 FPFSLYARLFQICSSNLAIVEARKVESHLITFSPAPPIFLLNRAIETYGKCSCLDDAREL 117
Query: 175 FSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDD 234
F ++ + + W A I + G + F M R I N TF+SVL +C V
Sbjct: 118 FEEMPQRDGGSWNAMITAYAQGGCAEKALWLFSRMNRLGIWANEITFASVLGSCATVLAL 177
Query: 235 GNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLV 294
+Q+H IVK G + + LVD+YGKCR++ DA R+F+ I + N SWN ++
Sbjct: 178 -FLSKQIHGLIVKYGFCWNVILGSSLVDIYGKCRVMSDARRMFDEI-ENPNAISWNVIVR 235
Query: 295 GYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
Y+ G EA + M + I+ ++ IACSSISA
Sbjct: 236 RYLEMGNEKEAVVMFFKMIRANIRPLNFTFSNALIACSSISA 277
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 81/316 (25%), Positives = 138/316 (43%), Gaps = 38/316 (12%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ ++ C + AR++FDE+ + SW V++ Y+++ + +E + +F +M++ +
Sbjct: 202 LVDIYGKCRVMSDARRMFDEIENPNAISWNVIVRRYLEMGNEKEAVVMFFKMIRANIRPL 261
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
F +I AC ++ G Q+HG+ ++G + ++ SLI+ Y K LE A
Sbjct: 262 NFTFSNALI-----ACSSISALQEGIQIHGVAIRIGYDEDEVVSSSLIDMYAKCGDLESA 316
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMG-RERIKKNS------------ 218
+F N + WT+ + G + F EM R I N+
Sbjct: 317 CRIFELPSSKNLISWTSIVSGYAMSGQTREARVLFDEMPERSVISWNAMLAGYTHFCQWE 376
Query: 219 ------------------YTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGL 260
T +L C G+ D G+Q+H I + GL S+ +V L
Sbjct: 377 EALEFVFLMRKATQDIDHVTVGLILNVCAGLSDV-ESGKQVHGFIYRHGLYSNLFVGNAL 435
Query: 261 VDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQ 320
+ MYGKC LR F + ++ SWNA+L + R+GL EA M+ +
Sbjct: 436 LHMYGKCGNLRSTRLWFYQMSHWRDRISWNALLTSHARHGLSEEAMTIFGEMQWETTPSK 495
Query: 321 ESLINDLRIACSSISA 336
+L L AC++I A
Sbjct: 496 FTL-GTLLSACANIFA 510
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 86/191 (45%), Gaps = 7/191 (3%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMP-LRDFNSWAVMIVGYVDVADYQECI 97
R + L N LL M+ CG L + R F +M RD SW ++ + +E +
Sbjct: 422 RHGLYSNLFVGNALLHMYGKCGNLRSTRLWFYQMSHWRDRISWNALLTSHARHGLSEEAM 481
Query: 98 TLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGS 157
T+F EM + + +L AC +E GKQ+HG + + G ++ G+
Sbjct: 482 TIFGEMQWETTPS------KFTLGTLLSACANIFALEQGKQIHGFMIRNGYEIDVVARGA 535
Query: 158 LINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKN 217
L++ Y K RCLE A VF + + ++W + I+ C G V F M E +K +
Sbjct: 536 LVDMYSKCRCLEYALKVFKEAPSRDLILWNSMILGCCHNGRGRDVLGLFGLMEEEGVKPD 595
Query: 218 SYTFSSVLKAC 228
TF +L C
Sbjct: 596 HITFQGILLGC 606
Score = 38.5 bits (88), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 62/149 (41%), Gaps = 7/149 (4%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ C L+ A ++F E P RD W MI+G ++ + LF M +
Sbjct: 536 LVDMYSKCRCLEYALKVFKEAPSRDLILWNSMILGCCHNGRGRDVLGLFGLMEEEGVKPD 595
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQ-VHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
+ F +L C+C LG + + + K + S+I YG+ +++
Sbjct: 596 HITFQG-----ILLGCICEGLAGLGTEYFNSMSNKYCIIPRLEHYESMIELYGRHGFMDE 650
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCRE-GH 198
+ ++ TV ++ N C E GH
Sbjct: 651 LEDFIKRMPFEPTVAMLTRVFNACSEHGH 679
>gi|328774747|gb|AEB39773.1| pentatricopeptide repeat protein 43 [Funaria hygrometrica]
Length = 1073
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 96/308 (31%), Positives = 154/308 (50%), Gaps = 9/308 (2%)
Query: 11 DMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFD 70
+ Y +++C K A ++ +H+R KP + N L+ M+ CG ++ A +F
Sbjct: 101 NFYARRLQQCVLAKSLAEGKKVHDHMRS-AQFKPDIYLNNMLISMYSKCGSIEDANNVFQ 159
Query: 71 EMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCT 130
M +D SW MI GY QE LF +M + F + +L AC
Sbjct: 160 AMEDKDVVSWNAMISGYALHGRDQEAADLFYQMQREGLKPNQNTF-----ISILSACQSP 214
Query: 131 MNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKI 190
+ +E G+Q+H + K G +++++ +LIN Y K LE A VF++++ N V WTA I
Sbjct: 215 IALEFGEQIHSRIAKAGYESDVNVSTALINMYCKCGSLELARKVFNEMRERNVVSWTAMI 274
Query: 191 VNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGL 250
+ G + F+++ R I+ N +F+S+L AC +D G G ++HA I + GL
Sbjct: 275 SGYVQHGDSREALALFRKLIRSGIQPNKVSFASILGACTNPNDLGE-GLKLHAYIKQAGL 333
Query: 251 ESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLY 310
E + V L+ MY +C L +A +VF+ + N +WNAM+ GY GL EA +
Sbjct: 334 EQEVLVGNALISMYSRCGSLANARQVFDNL-RSLNRTTWNAMIAGY-GEGLMEEAFRLFR 391
Query: 311 LMKASGIQ 318
M+ G Q
Sbjct: 392 AMEQKGFQ 399
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 94/324 (29%), Positives = 151/324 (46%), Gaps = 8/324 (2%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
Y L+ C + D EL + I + L L+ M+ CG + AR++F++M
Sbjct: 405 YASLLAICADRADLDRGKELHSQI-ASTGWQTDLTVATALISMYAKCGSPEEARKVFNQM 463
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN 132
P R+ SW I +E F +M + + F + +L +C +
Sbjct: 464 PERNVISWNAFISCCCRHDLGKEAFQAFKQMRRDDVNPDHITF-----ITLLNSCTSPED 518
Query: 133 MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192
+E G+ +HG + + G N + +LI+ YG+ L DA VF +++R + W A I
Sbjct: 519 LERGRYIHGKINQWGMLSNNHVANALISMYGRCGNLADAREVFYRIRRRDLGSWNAMIAA 578
Query: 193 NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLES 252
N + G F+ F++ E K + YTF +VL+A ++D + GR +H + K G
Sbjct: 579 NVQHGANGSAFDLFRKYRSEGGKGDKYTFINVLRAVANLEDL-DAGRMIHGLVEKGGFGK 637
Query: 253 DEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLM 312
D V L+ MY KC LRDAE VF V +K++ WNAML Y + +A K M
Sbjct: 638 DIRVLTTLIKMYSKCGSLRDAENVFS-TVQEKDVVCWNAMLAAYAHSDRGQDALKLFQQM 696
Query: 313 KASGIQIQESLINDLRIACSSISA 336
+ G+ S + AC+ ++A
Sbjct: 697 QLEGVNPDSSTYSTALNACARLTA 720
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 150/308 (48%), Gaps = 14/308 (4%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLL---FLNRLLLMHVSCGQLDTARQLF 69
+ L+ CT +D E +I ++N L N L+ M+ CG L AR++F
Sbjct: 506 FITLLNSCTSPED----LERGRYIHGKINQWGMLSNNHVANALISMYGRCGNLADAREVF 561
Query: 70 DEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVC 129
+ RD SW MI V LF + R +G + + VL+A
Sbjct: 562 YRIRRRDLGSWNAMIAANVQHGANGSAFDLFRKY--RSEGGK---GDKYTFINVLRAVAN 616
Query: 130 TMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAK 189
+++ G+ +HGL+ K G ++I + +LI Y K L DA+ VFS ++ + V W A
Sbjct: 617 LEDLDAGRMIHGLVEKGGFGKDIRVLTTLIKMYSKCGSLRDAENVFSTVQEKDVVCWNAM 676
Query: 190 IVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIG 249
+ F++M E + +S T+S+ L AC + + G+++HA + + G
Sbjct: 677 LAAYAHSDRGQDALKLFQQMQLEGVNPDSSTYSTALNACARLTAVEH-GKKIHAQLKEAG 735
Query: 250 LESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFL 309
+E+D V L++MY +C L A++VFE ++ ++I SWNA++ GY +NG A ++
Sbjct: 736 METDTRVSNSLIEMYSRCGCLCSAKQVFEKML-SRDINSWNALIAGYCQNGQGNIALEYY 794
Query: 310 YLMKASGI 317
LM + I
Sbjct: 795 ELMLRASI 802
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 70/210 (33%), Positives = 105/210 (50%), Gaps = 2/210 (0%)
Query: 124 LKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNT 183
L+ CV ++ GK+VH + +I L LI+ Y K +EDA+ VF ++ +
Sbjct: 107 LQQCVLAKSLAEGKKVHDHMRSAQFKPDIYLNNMLISMYSKCGSIEDANNVFQAMEDKDV 166
Query: 184 VVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHA 243
V W A I G + + F +M RE +K N TF S+L AC G Q+H+
Sbjct: 167 VSWNAMISGYALHGRDQEAADLFYQMQREGLKPNQNTFISILSACQS-PIALEFGEQIHS 225
Query: 244 NIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYV 303
I K G ESD V L++MY KC L A +VF + ++ N+ SW AM+ GY+++G
Sbjct: 226 RIAKAGYESDVNVSTALINMYCKCGSLELARKVFNEMRER-NVVSWTAMISGYVQHGDSR 284
Query: 304 EATKFLYLMKASGIQIQESLINDLRIACSS 333
EA + SGIQ + + AC++
Sbjct: 285 EALALFRKLIRSGIQPNKVSFASILGACTN 314
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 62/248 (25%), Positives = 105/248 (42%), Gaps = 7/248 (2%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
L L+ M+ CG L A +F + +D W M+ Y Q+ + LF +M
Sbjct: 642 LTTLIKMYSKCGSLRDAENVFSTVQEKDVVCWNAMLAAYAHSDRGQDALKLFQQM----- 696
Query: 109 GHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
+ V P + L AC +E GK++H L + G + ++ SLI Y + C
Sbjct: 697 -QLEGVNPDSSTYSTALNACARLTAVEHGKKIHAQLKEAGMETDTRVSNSLIEMYSRCGC 755
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
L A VF ++ + W A I C+ G + ++ M R I N TF+S+L +
Sbjct: 756 LCSAKQVFEKMLSRDINSWNALIAGYCQNGQGNIALEYYELMLRASIVPNKATFTSILSS 815
Query: 228 CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
+ ++ + + + +E E +V G+ LL++AE E I +
Sbjct: 816 YAQLGEEEQAFDFLESIKKEWNMEPSEQHYAYMVAALGRAGLLKEAEEFIEEISAESAAL 875
Query: 288 SWNAMLVG 295
W ++LV
Sbjct: 876 MWESLLVA 883
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 76/155 (49%), Gaps = 4/155 (2%)
Query: 179 KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCG 238
+ +NT KIV + REG + + +G+ ++ N ++ L+ C G
Sbjct: 63 ESNNTWDEGPKIVRDTREGK--SIKGAVQLLGKRGVQANLNFYARRLQQCVLAKSLAE-G 119
Query: 239 RQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIR 298
+++H ++ + D Y+ L+ MY KC + DA VF+ + DK ++ SWNAM+ GY
Sbjct: 120 KKVHDHMRSAQFKPDIYLNNMLISMYSKCGSIEDANNVFQAMEDK-DVVSWNAMISGYAL 178
Query: 299 NGLYVEATKFLYLMKASGIQIQESLINDLRIACSS 333
+G EA Y M+ G++ ++ + AC S
Sbjct: 179 HGRDQEAADLFYQMQREGLKPNQNTFISILSACQS 213
>gi|297838665|ref|XP_002887214.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297333055|gb|EFH63473.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 740
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 103/324 (31%), Positives = 153/324 (47%), Gaps = 36/324 (11%)
Query: 43 KPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAE 102
+P L N LLL + G L + F+++P RD +W V+I GY + +
Sbjct: 66 QPNLFSWNNLLLAYSKSGHLSEMERTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNT 125
Query: 103 MMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFY 162
MMK ++ V ++ +LK ++ LGKQ+HG + KLG + + L++ Y
Sbjct: 126 MMKDFSSNLTRV----TLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLDMY 181
Query: 163 GKFRCLEDADFVFSQLKRHNTVV------------------------------WTAKIVN 192
K C+ DA VF L NTV+ W+A I
Sbjct: 182 SKVGCISDAKKVFYGLDDRNTVMYNTLMGGLLACGMIEDALQLFRGMEKDSVSWSAMIKG 241
Query: 193 NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLES 252
+ G + F+EM E +K + Y F SVL ACGG+ N GRQ+HA I++ L+
Sbjct: 242 LAQNGMEKEAIECFREMKIEGLKMDQYPFGSVLPACGGLGAI-NDGRQIHACIIRTNLQD 300
Query: 253 DEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLM 312
YV L+DMY KC+ L A+ VF+ + +KN+ SW AM+VGY + G EA K M
Sbjct: 301 HIYVGSALIDMYCKCKCLHYAKTVFDRM-KQKNVVSWTAMVVGYGQTGRAGEAVKIFLDM 359
Query: 313 KASGIQIQESLINDLRIACSSISA 336
+ SGI + AC++IS+
Sbjct: 360 QRSGIDPDHYTLGQAISACANISS 383
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 84/286 (29%), Positives = 133/286 (46%), Gaps = 8/286 (2%)
Query: 47 LFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR 106
+ N L+ ++CG ++ A QLF M +D SW+ MI G +E I F EM +
Sbjct: 203 VMYNTLMGGLLACGMIEDALQLFRGME-KDSVSWSAMIKGLAQNGMEKEAIECFREM--K 259
Query: 107 KKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166
+G + +P VL AC + G+Q+H + + +I + +LI+ Y K +
Sbjct: 260 IEGLKMDQYP---FGSVLPACGGLGAINDGRQIHACIIRTNLQDHIYVGSALIDMYCKCK 316
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
CL A VF ++K+ N V WTA +V + G + F +M R I + YT +
Sbjct: 317 CLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAGEAVKIFLDMQRSGIDPDHYTLGQAIS 376
Query: 227 ACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
AC + G Q H + GL V LV +YGKC + D+ R+F + + ++
Sbjct: 377 ACANISSLEE-GSQFHGKAITAGLIHYITVSNSLVTLYGKCGDIDDSTRLFNEM-NVRDE 434
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
SW AM+ Y + G VEA + M G++ + + ACS
Sbjct: 435 VSWTAMVSAYAQFGRAVEAIQLFDKMVQLGLKPDGVTLTGVISACS 480
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/258 (22%), Positives = 118/258 (45%), Gaps = 11/258 (4%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R N++ + + L+ M+ C L A+ +FD M ++ SW M+VGY E +
Sbjct: 295 RTNLQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAGEAVK 354
Query: 99 LFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGS 157
+F +M + + P + + + AC ++E G Q HG G I+++ S
Sbjct: 355 IFLDMQRSG------IDPDHYTLGQAISACANISSLEEGSQFHGKAITAGLIHYITVSNS 408
Query: 158 LINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKN 217
L+ YGK ++D+ +F+++ + V WTA + + G + F +M + +K +
Sbjct: 409 LVTLYGKCGDIDDSTRLFNEMNVRDEVSWTAMVSAYAQFGRAVEAIQLFDKMVQLGLKPD 468
Query: 218 SYTFSSVLKAC--GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAER 275
T + V+ AC G+ + G ++ N I + S+ + C ++D++ + + +A
Sbjct: 469 GVTLTGVISACSRAGLVEKGQRYFELMINEYGI-VPSNGHYSC-MIDLFSRSGRIEEAMG 526
Query: 276 VFELIVDKKNIASWNAML 293
+ + + W +L
Sbjct: 527 FINGMPFRPDAIGWTTLL 544
>gi|449469198|ref|XP_004152308.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g37170-like [Cucumis sativus]
gi|449484855|ref|XP_004156999.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g37170-like [Cucumis sativus]
Length = 724
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 100/340 (29%), Positives = 169/340 (49%), Gaps = 39/340 (11%)
Query: 10 TDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLF 69
+Y L+K C Q+ ++ HI+ +I L NRLL M+ CG L A ++F
Sbjct: 119 ASIYLTLLKFCLKQRALKEGKQVHAHIKTSGSI--GLYISNRLLDMYAKCGSLVDAEKVF 176
Query: 70 DEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVL----- 124
DEM RD SW +MI GYV ++++ LF +M R + A I CV
Sbjct: 177 DEMVHRDLCSWNIMISGYVKGGNFEKARNLFDKMPNRDN----FSWTAIISGCVQHNRPE 232
Query: 125 ---------------KACVCTM-----------NMELGKQVHGLLFKLGSSRNISLTGSL 158
K+ CT+ ++ +GK++HG + ++G + + SL
Sbjct: 233 EALELYRLMQKHDYSKSNKCTISSALAASAAIPSLHMGKKIHGHIMRMGLDSDEVVWCSL 292
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
++ YGK +E+A ++F +++ + V WT I + G + F F+ + I N
Sbjct: 293 LDMYGKCGSIEEARYIFDKMEERDVVSWTTMIHTYLKNGRREEGFALFRHLMNSNIMPND 352
Query: 219 YTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE 278
+TF+ VL AC + + + G+Q+HA +V++G +S LV MY KC + +A+ VFE
Sbjct: 353 FTFAGVLNACADLAAE-DLGKQIHAYMVRVGFDSFSSAASALVHMYSKCGDIENAKSVFE 411
Query: 279 LIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
I+ + ++ SW ++LVGY ++G + +A F L+ SG +
Sbjct: 412 -ILPQPDLFSWTSLLVGYAQHGQHDKALHFFELLLKSGTK 450
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 113/248 (45%), Gaps = 13/248 (5%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL M+ CG ++ AR +FD+M RD SW MI Y+ +E LF +M
Sbjct: 292 LLDMYGKCGSIEEARYIFDKMEERDVVSWTTMIHTYLKNGRREEGFALFRHLMNSN---- 347
Query: 112 LLVFPA-WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
+ P + VL AC +LGKQ+H + ++G S +L++ Y K +E+
Sbjct: 348 --IMPNDFTFAGVLNACADLAAEDLGKQIHAYMVRVGFDSFSSAASALVHMYSKCGDIEN 405
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC-- 228
A VF L + + WT+ +V + G + + F+ + + K + F VL AC
Sbjct: 406 AKSVFEILPQPDLFSWTSLLVGYAQHGQHDKALHFFELLLKSGTKPDGIAFIGVLSACAH 465
Query: 229 GGVDDDGNCGRQMHANIVKIGL-ESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
G+ D G H+ K GL + ++ C ++D+ + +AE + + K +
Sbjct: 466 AGLVDKGL--EYFHSIKEKHGLTRTIDHYAC-IIDLLARAGQFTEAESIINEMPIKPDKY 522
Query: 288 SWNAMLVG 295
W A+L G
Sbjct: 523 IWAALLGG 530
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 118/258 (45%), Gaps = 41/258 (15%)
Query: 117 AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFS 176
A I + +LK C+ ++ GKQVH + K S + ++ L++ Y K L DA+ VF
Sbjct: 119 ASIYLTLLKFCLKQRALKEGKQVHAHI-KTSGSIGLYISNRLLDMYAKCGSLVDAEKVFD 177
Query: 177 QLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC-------- 228
++ + W I + G+F + N F +M ++++++++++ C
Sbjct: 178 EMVHRDLCSWNIMISGYVKGGNFEKARNLFDKMP----NRDNFSWTAIISGCVQHNRPEE 233
Query: 229 ----------GGVDDDGNC-----------------GRQMHANIVKIGLESDEYVQCGLV 261
C G+++H +I+++GL+SDE V C L+
Sbjct: 234 ALELYRLMQKHDYSKSNKCTISSALAASAAIPSLHMGKKIHGHIMRMGLDSDEVVWCSLL 293
Query: 262 DMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQE 321
DMYGKC + +A +F+ + +++++ SW M+ Y++NG E + S I +
Sbjct: 294 DMYGKCGSIEEARYIFDKM-EERDVVSWTTMIHTYLKNGRREEGFALFRHLMNSNIMPND 352
Query: 322 SLINDLRIACSSISASKI 339
+ AC+ ++A +
Sbjct: 353 FTFAGVLNACADLAAEDL 370
>gi|145340387|ref|NP_193587.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122236144|sp|Q0WNP3.1|PP319_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g18520
gi|110738662|dbj|BAF01256.1| hypothetical protein [Arabidopsis thaliana]
gi|332658657|gb|AEE84057.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 617
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 98/319 (30%), Positives = 164/319 (51%), Gaps = 8/319 (2%)
Query: 16 LIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLR 75
++K C+ +K ++ + + KR+ IK + L+ M+ CG++ R++FD M R
Sbjct: 290 ILKACSEEKALRFGRQVHSLVVKRM-IKTDVFVGTSLMDMYAKCGEISDCRKVFDGMSNR 348
Query: 76 DFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMEL 135
+ +W +I + +E I+LF +MKR+ L+ +V +L+AC + L
Sbjct: 349 NTVTWTSIIAAHAREGFGEEAISLF-RIMKRRH----LIANNLTVVSILRACGSVGALLL 403
Query: 136 GKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCR 195
GK++H + K +N+ + +L+ Y K DA V QL + V WTA I
Sbjct: 404 GKELHAQIIKNSIEKNVYIGSTLVWLYCKCGESRDAFNVLQQLPSRDVVSWTAMISGCSS 463
Query: 196 EGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEY 255
GH + + KEM +E ++ N +T+SS LKAC + GR +H+ K S+ +
Sbjct: 464 LGHESEALDFLKEMIQEGVEPNPFTYSSALKACAN-SESLLIGRSIHSIAKKNHALSNVF 522
Query: 256 VQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKAS 315
V L+ MY KC + +A RVF+ + +KN+ SW AM++GY RNG EA K +Y M+A
Sbjct: 523 VGSALIHMYAKCGFVSEAFRVFDSM-PEKNLVSWKAMIMGYARNGFCREALKLMYRMEAE 581
Query: 316 GIQIQESLINDLRIACSSI 334
G ++ + + + C I
Sbjct: 582 GFEVDDYIFATILSTCGDI 600
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 88/291 (30%), Positives = 141/291 (48%), Gaps = 7/291 (2%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
+ F N L+ V G L AR++FD MP ++ +W MI GY+ E LF + +K
Sbjct: 117 IYFGNNLISSCVRLGDLVYARKVFDSMPEKNTVTWTAMIDGYLKYGLEDEAFALFEDYVK 176
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
H + + VC+L C ELG+QVHG + K+G N+ + SL+ FY +
Sbjct: 177 ----HGIRFTNERMFVCLLNLCSRRAEFELGRQVHGNMVKVGVG-NLIVESSLVYFYAQC 231
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
L A F ++ + + WTA I R+GH + F M N +T S+L
Sbjct: 232 GELTSALRAFDMMEEKDVISWTAVISACSRKGHGIKAIGMFIGMLNHWFLPNEFTVCSIL 291
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
KAC + GRQ+H+ +VK +++D +V L+DMY KC + D +VF+ + + +N
Sbjct: 292 KACSE-EKALRFGRQVHSLVVKRMIKTDVFVGTSLMDMYAKCGEISDCRKVFDGMSN-RN 349
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+W +++ + R G EA +MK + + + AC S+ A
Sbjct: 350 TVTWTSIIAAHAREGFGEEAISLFRIMKRRHLIANNLTVVSILRACGSVGA 400
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 97/328 (29%), Positives = 156/328 (47%), Gaps = 21/328 (6%)
Query: 12 MYTCLIKECTFQKDSAGAFELLNHIRK---RVNIKPTLLFLNRLLLMHVSCGQLDTARQL 68
M+ CL+ C+ + + FEL + +V + L+ + L+ + CG+L +A +
Sbjct: 186 MFVCLLNLCSRRAE----FELGRQVHGNMVKVGVG-NLIVESSLVYFYAQCGELTSALRA 240
Query: 69 FDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVC-VLKAC 127
FD M +D SW +I + I +F M+ H L P VC +LKAC
Sbjct: 241 FDMMEEKDVISWTAVISACSRKGHGIKAIGMFIGMLN----HWFL--PNEFTVCSILKAC 294
Query: 128 VCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWT 187
+ G+QVH L+ K ++ + SL++ Y K + D VF + NTV WT
Sbjct: 295 SEEKALRFGRQVHSLVVKRMIKTDVFVGTSLMDMYAKCGEISDCRKVFDGMSNRNTVTWT 354
Query: 188 AKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGN--CGRQMHANI 245
+ I + REG + + F+ M R + N+ T S+L+ACG V G G+++HA I
Sbjct: 355 SIIAAHAREGFGEEAISLFRIMKRRHLIANNLTVVSILRACGSV---GALLLGKELHAQI 411
Query: 246 VKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEA 305
+K +E + Y+ LV +Y KC RDA V + + +++ SW AM+ G G EA
Sbjct: 412 IKNSIEKNVYIGSTLVWLYCKCGESRDAFNVLQQL-PSRDVVSWTAMISGCSSLGHESEA 470
Query: 306 TKFLYLMKASGIQIQESLINDLRIACSS 333
FL M G++ + AC++
Sbjct: 471 LDFLKEMIQEGVEPNPFTYSSALKACAN 498
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 89/201 (44%), Gaps = 11/201 (5%)
Query: 34 NHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADY 93
N I K V I TL++L + CG+ A + ++P RD SW MI G +
Sbjct: 414 NSIEKNVYIGSTLVWL------YCKCGESRDAFNVLQQLPSRDVVSWTAMISGCSSLGHE 467
Query: 94 QECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNIS 153
E + EM++ + + LKAC + ++ +G+ +H + K + N+
Sbjct: 468 SEALDFLKEMIQEGVEPNPFTYSS-----ALKACANSESLLIGRSIHSIAKKNHALSNVF 522
Query: 154 LTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRER 213
+ +LI+ Y K + +A VF + N V W A I+ R G + M E
Sbjct: 523 VGSALIHMYAKCGFVSEAFRVFDSMPEKNLVSWKAMIMGYARNGFCREALKLMYRMEAEG 582
Query: 214 IKKNSYTFSSVLKACGGVDDD 234
+ + Y F+++L CG ++ D
Sbjct: 583 FEVDDYIFATILSTCGDIELD 603
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 85/174 (48%), Gaps = 4/174 (2%)
Query: 133 MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192
M L K++H + K + I +LI+ + L A VF + NTV WTA I
Sbjct: 98 MRLIKRIHAMALKCFDDQVIYFGNNLISSCVRLGDLVYARKVFDSMPEKNTVTWTAMIDG 157
Query: 193 NCREGHFHQVFNDFKEMGRERIK-KNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLE 251
+ G + F F++ + I+ N F +L C + GRQ+H N+VK+G+
Sbjct: 158 YLKYGLEDEAFALFEDYVKHGIRFTNERMFVCLLNLCSR-RAEFELGRQVHGNMVKVGV- 215
Query: 252 SDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEA 305
+ V+ LV Y +C L A R F+++ ++K++ SW A++ R G ++A
Sbjct: 216 GNLIVESSLVYFYAQCGELTSALRAFDMM-EEKDVISWTAVISACSRKGHGIKA 268
>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1183
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 97/288 (33%), Positives = 153/288 (53%), Gaps = 10/288 (3%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
++F N LL M+ CG L+ A ++F +M SW I YV Y + I LF EM
Sbjct: 606 VVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEM-- 663
Query: 106 RKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
+ KG V P + + ++ AC C+ +++ G+ VH + K G N+ +T +LIN Y K
Sbjct: 664 QSKG----VRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAK 719
Query: 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
+E+A VFS++ + V W I + ++ F +M +++ K + T + V
Sbjct: 720 CGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNSLPNEALELFLDM-QKQFKPDDITMACV 778
Query: 225 LKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
L AC G+ GR++H +I++ G SD +V C LVDMY KC LL A+ +F++I KK
Sbjct: 779 LPACAGLAALDK-GREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMI-PKK 836
Query: 285 NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
++ SW M+ GY +G EA M+ +GI+ ES + + ACS
Sbjct: 837 DLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSVILNACS 884
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 82/283 (28%), Positives = 136/283 (48%), Gaps = 13/283 (4%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
+N L+ + G +++A LFDE+ D SW MI G V + +F +M+
Sbjct: 508 VNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLI--- 564
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+ + +V VL A N+ LG+ +HG K S + + +L++ Y K L
Sbjct: 565 --LGVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNL 622
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
A VF ++ V WT+ I REG + F EM + ++ + YT +S++ AC
Sbjct: 623 NGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHAC 682
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
+ GR +H+ ++K G+ S+ V L++MY KC + +A VF I K+I S
Sbjct: 683 -ACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKI-PVKDIVS 740
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
WN M+ GY +N L EA + M+ ++ +D+ +AC
Sbjct: 741 WNTMIGGYSQNSLPNEALELFLDMQ------KQFKPDDITMAC 777
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 85/296 (28%), Positives = 139/296 (46%), Gaps = 27/296 (9%)
Query: 51 RLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGH 110
+L+ M+V+CG L R++FD++ W +++ Y + +++E ++LF +M K
Sbjct: 409 KLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQK----- 463
Query: 111 MLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
+ +V + CVLK ++ K+VHG + KLG N ++ SLI Y KF +E
Sbjct: 464 LGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVES 523
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRE--------RIKKNSYTFS 222
A +F +L + V W + ++N C V N F G E ++ + T
Sbjct: 524 AHNLFDELSEPDVVSWNS-MINGC-------VVNGFSGNGLEIFIQMLILGVEVDLTTLV 575
Query: 223 SVLKACGGVDDDGN--CGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELI 280
SVL A + GN GR +H VK + L+DMY KC L A VF +
Sbjct: 576 SVLVAWANI---GNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKM 632
Query: 281 VDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
D I SW + + Y+R GLY +A M++ G++ + + AC+ S+
Sbjct: 633 GD-TTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSS 687
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 122/253 (48%), Gaps = 12/253 (4%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L N L+ M+ CG ++ AR +F ++P++D SW MI GY + E + LF +M K
Sbjct: 707 LPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNSLPNEALELFLDMQK 766
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
+ K + + CVL AC ++ G+++HG + + G ++ + +L++ Y K
Sbjct: 767 QFKPDDI------TMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKC 820
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
L A +F + + + + WT I G ++ + F EM I+ + +FS +L
Sbjct: 821 GLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSVIL 880
Query: 226 KAC--GGVDDDGNCGRQMHANIVKIGLESD-EYVQCGLVDMYGKCRLLRDAERVFELIVD 282
AC G+ ++G + ++ + G+E E+ C +VD+ + L A + E +
Sbjct: 881 NACSHSGLLNEG--WKFFNSMRNECGVEPKLEHYAC-VVDLLARMGNLSKAYKFIESMPI 937
Query: 283 KKNIASWNAMLVG 295
K + W +L G
Sbjct: 938 KPDTTIWGVLLSG 950
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 100/212 (47%), Gaps = 2/212 (0%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
VL+ C ++E GK+VH ++ G S + +L L+ Y L +F ++
Sbjct: 375 VLQLCAEKKSLEDGKRVHSVIISNGISIDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDK 434
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
+W + + G+F + + FK+M + + N YTF+ VLK + C R +H
Sbjct: 435 VFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKR-VH 493
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
++K+G S+ V L+ Y K + A +F+ + + ++ SWN+M+ G + NG
Sbjct: 494 GYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDEL-SEPDVVSWNSMINGCVVNGFS 552
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIACSSI 334
+ M G+++ + + + +A ++I
Sbjct: 553 GNGLEIFIQMLILGVEVDLTTLVSVLVAWANI 584
>gi|297800206|ref|XP_002867987.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297313823|gb|EFH44246.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 616
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 98/319 (30%), Positives = 164/319 (51%), Gaps = 8/319 (2%)
Query: 16 LIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLR 75
++K C+ +K ++ + + KR+ IK + L+ M+ CG++ R++FD M R
Sbjct: 290 ILKACSEEKAIRFGRQVHSLVVKRM-IKTDVFVGTSLMDMYAKCGEISDCRKVFDGMSNR 348
Query: 76 DFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMEL 135
+ +W +I + +E I+LF +MKR+ L+ +V +L+AC + L
Sbjct: 349 NTVTWTSIIAAHAREGFGEEAISLF-RVMKRRH----LIANNLTVVSILRACGSVGALLL 403
Query: 136 GKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCR 195
GK++H + K +N+ + +L+ Y K DA V QL + V WTA I
Sbjct: 404 GKELHAQIIKNSIEKNVYIGSTLVWLYCKCGESRDAFNVLQQLPSRDVVSWTAMISGCSS 463
Query: 196 EGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEY 255
GH + + KEM +E ++ N +T+SS LKAC + GR +H+ K S+ +
Sbjct: 464 LGHESEALDFLKEMIQEGVEPNPFTYSSALKACAN-SESLLIGRSIHSIAKKNHALSNVF 522
Query: 256 VQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKAS 315
V L+ MY KC + +A RVF+ + +KN+ SW AM++GY RNG EA K +Y M+A
Sbjct: 523 VGSALIHMYAKCGFVSEAFRVFDSM-PEKNLVSWKAMIMGYARNGFCREALKLMYRMEAE 581
Query: 316 GIQIQESLINDLRIACSSI 334
G ++ + + + C I
Sbjct: 582 GFEVDDYIFATILSTCGDI 600
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 89/291 (30%), Positives = 143/291 (49%), Gaps = 7/291 (2%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
+ F N L+ V G L AR++FD MP R+ +W MI GY+ E +LF + +K
Sbjct: 117 IYFGNNLISSCVRLGDLVYARKVFDSMPDRNTVTWTAMIDGYLKFGLEDEAFSLFEDYVK 176
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
H + + VC+L C ELG+QVHG + K+G N+ + SL+ FY +
Sbjct: 177 ----HGIRFTNERMFVCLLNLCSRRSEFELGRQVHGNMVKVGVG-NLIVESSLVYFYAQC 231
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
L A F ++ + + WTA I R+GH ++ F M N +T S+L
Sbjct: 232 GELTSALRAFDMMEEKDVISWTAVISACSRKGHGNKAIFMFIGMLNHGFLPNEFTVCSIL 291
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
KAC + GRQ+H+ +VK +++D +V L+DMY KC + D +VF+ + + +N
Sbjct: 292 KACSE-EKAIRFGRQVHSLVVKRMIKTDVFVGTSLMDMYAKCGEISDCRKVFDGMSN-RN 349
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+W +++ + R G EA +MK + + + AC S+ A
Sbjct: 350 TVTWTSIIAAHAREGFGEEAISLFRVMKRRHLIANNLTVVSILRACGSVGA 400
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 97/328 (29%), Positives = 156/328 (47%), Gaps = 21/328 (6%)
Query: 12 MYTCLIKECTFQKDSAGAFELLNHIRK---RVNIKPTLLFLNRLLLMHVSCGQLDTARQL 68
M+ CL+ C+ + + FEL + +V + L+ + L+ + CG+L +A +
Sbjct: 186 MFVCLLNLCSRRSE----FELGRQVHGNMVKVGVG-NLIVESSLVYFYAQCGELTSALRA 240
Query: 69 FDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVC-VLKAC 127
FD M +D SW +I + I +F M+ H L P VC +LKAC
Sbjct: 241 FDMMEEKDVISWTAVISACSRKGHGNKAIFMFIGMLN----HGFL--PNEFTVCSILKAC 294
Query: 128 VCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWT 187
+ G+QVH L+ K ++ + SL++ Y K + D VF + NTV WT
Sbjct: 295 SEEKAIRFGRQVHSLVVKRMIKTDVFVGTSLMDMYAKCGEISDCRKVFDGMSNRNTVTWT 354
Query: 188 AKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGN--CGRQMHANI 245
+ I + REG + + F+ M R + N+ T S+L+ACG V G G+++HA I
Sbjct: 355 SIIAAHAREGFGEEAISLFRVMKRRHLIANNLTVVSILRACGSV---GALLLGKELHAQI 411
Query: 246 VKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEA 305
+K +E + Y+ LV +Y KC RDA V + + +++ SW AM+ G G EA
Sbjct: 412 IKNSIEKNVYIGSTLVWLYCKCGESRDAFNVLQQL-PSRDVVSWTAMISGCSSLGHESEA 470
Query: 306 TKFLYLMKASGIQIQESLINDLRIACSS 333
FL M G++ + AC++
Sbjct: 471 LDFLKEMIQEGVEPNPFTYSSALKACAN 498
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 89/201 (44%), Gaps = 11/201 (5%)
Query: 34 NHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADY 93
N I K V I TL++L + CG+ A + ++P RD SW MI G +
Sbjct: 414 NSIEKNVYIGSTLVWL------YCKCGESRDAFNVLQQLPSRDVVSWTAMISGCSSLGHE 467
Query: 94 QECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNIS 153
E + EM++ + + LKAC + ++ +G+ +H + K + N+
Sbjct: 468 SEALDFLKEMIQEGVEPNPFTYSS-----ALKACANSESLLIGRSIHSIAKKNHALSNVF 522
Query: 154 LTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRER 213
+ +LI+ Y K + +A VF + N V W A I+ R G + M E
Sbjct: 523 VGSALIHMYAKCGFVSEAFRVFDSMPEKNLVSWKAMIMGYARNGFCREALKLMYRMEAEG 582
Query: 214 IKKNSYTFSSVLKACGGVDDD 234
+ + Y F+++L CG ++ D
Sbjct: 583 FEVDDYIFATILSTCGDIELD 603
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 94/205 (45%), Gaps = 4/205 (1%)
Query: 133 MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192
M L K++H + K + I +LI+ + L A VF + NTV WTA I
Sbjct: 98 MRLIKRIHAMALKCFDDQVIYFGNNLISSCVRLGDLVYARKVFDSMPDRNTVTWTAMIDG 157
Query: 193 NCREGHFHQVFNDFKEMGRERIK-KNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLE 251
+ G + F+ F++ + I+ N F +L C + GRQ+H N+VK+G+
Sbjct: 158 YLKFGLEDEAFSLFEDYVKHGIRFTNERMFVCLLNLCSR-RSEFELGRQVHGNMVKVGV- 215
Query: 252 SDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYL 311
+ V+ LV Y +C L A R F+++ ++K++ SW A++ R G +A
Sbjct: 216 GNLIVESSLVYFYAQCGELTSALRAFDMM-EEKDVISWTAVISACSRKGHGNKAIFMFIG 274
Query: 312 MKASGIQIQESLINDLRIACSSISA 336
M G E + + ACS A
Sbjct: 275 MLNHGFLPNEFTVCSILKACSEEKA 299
>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 804
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 93/320 (29%), Positives = 153/320 (47%), Gaps = 8/320 (2%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
Y L++ C KD A ++ HI R +KP + N LL ++ CG ++ ARQLFD+
Sbjct: 31 YVKLLQSCVKAKDLAVGKQVHEHIL-RCGVKPNVYITNTLLKLYAHCGSVNEARQLFDKF 89
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN 132
+ SW VMI GY QE LF M + + L + V +L AC
Sbjct: 90 SNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQER-----LEPDKFTFVSILSACSSPAV 144
Query: 133 MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192
+ G+++H + + G + + ++ +LI+ Y K + DA VF + + V WT
Sbjct: 145 LNWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGA 204
Query: 193 NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLES 252
G+ + + M +ER++ + T+ +VL ACG + G+Q+HA+IV+ S
Sbjct: 205 YAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEK-GKQIHAHIVESEYHS 263
Query: 253 DEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLM 312
D V L MY KC +DA VFE + +++ +WN M+ G++ +G EA + M
Sbjct: 264 DVRVSTALTKMYMKCGAFKDAREVFECL-SYRDVIAWNTMIRGFVDSGQLEEAHGTFHRM 322
Query: 313 KASGIQIQESLINDLRIACS 332
G+ + + AC+
Sbjct: 323 LEEGVAPDRATYTTVLSACA 342
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 83/280 (29%), Positives = 138/280 (49%), Gaps = 7/280 (2%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L M++ CG AR++F+ + RD +W MI G+VD +E F M++
Sbjct: 271 LTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPD 330
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+ VL AC + GK++H K G ++ +LIN Y K ++DA
Sbjct: 331 RATY-----TTVLSACARPGGLARGKEIHARAAKDGLVSDVRFGNALINMYSKAGSMKDA 385
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
VF ++ + + V WT + + F FK+M ++ +K N T+ VLKAC
Sbjct: 386 RQVFDRMPKRDVVSWTTLLGRYADCDQVVESFTTFKQMLQQGVKANKITYMCVLKACSN- 444
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
G+++HA +VK GL +D V L+ MY KC + DA RVFE + +++ +WN
Sbjct: 445 PVALKWGKEIHAEVVKAGLLADLAVTNALMSMYFKCGSVEDAIRVFEGM-SMRDVVTWNT 503
Query: 292 MLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
++ G +NG +EA + +MK+ G++ + ++ AC
Sbjct: 504 LIGGLGQNGRGLEALQRYEVMKSEGMRPNAATFVNVLSAC 543
Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 108/216 (50%), Gaps = 2/216 (0%)
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
V +L++CV ++ +GKQVH + + G N+ +T +L+ Y + +A +F +
Sbjct: 32 VKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCGSVNEARQLFDKFSN 91
Query: 181 HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQ 240
+ V W I G + FN F M +ER++ + +TF S+L AC N GR+
Sbjct: 92 KSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILSACSS-PAVLNWGRE 150
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
+H +++ GL +D V L+ MY KC +RDA RVF+ + + + SW + Y +G
Sbjct: 151 IHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDEV-SWTTLTGAYAESG 209
Query: 301 LYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
E+ K + M ++ ++ AC S++A
Sbjct: 210 YGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAA 245
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/285 (28%), Positives = 135/285 (47%), Gaps = 10/285 (3%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRK-RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDE 71
YT ++ C A E+ H R + + + F N L+ M+ G + ARQ+FD
Sbjct: 334 YTTVLSACARPGGLARGKEI--HARAAKDGLVSDVRFGNALINMYSKAGSMKDARQVFDR 391
Query: 72 MPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTM 131
MP RD SW ++ Y D E T F +M+++ + + +CVLKAC +
Sbjct: 392 MPKRDVVSWTTLLGRYADCDQVVESFTTFKQMLQQGVKANKITY-----MCVLKACSNPV 446
Query: 132 NMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIV 191
++ GK++H + K G ++++T +L++ Y K +EDA VF + + V W I
Sbjct: 447 ALKWGKEIHAEVVKAGLLADLAVTNALMSMYFKCGSVEDAIRVFEGMSMRDVVTWNTLIG 506
Query: 192 NNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVK-IGL 250
+ G + ++ M E ++ N+ TF +VL AC V + GR+ A + K G+
Sbjct: 507 GLGQNGRGLEALQRYEVMKSEGMRPNAATFVNVLSAC-RVCNLVEEGRRQFAFMSKDYGI 565
Query: 251 ESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
E +VD+ + LR+AE V I K + A W A+L
Sbjct: 566 VPTEKHYACMVDILARAGHLREAEDVILTIPLKPSAAMWGALLAA 610
>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 908
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 97/288 (33%), Positives = 154/288 (53%), Gaps = 10/288 (3%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
++F N LL M+ CG L+ A ++F +M SW +I YV Y + I LF EM
Sbjct: 331 VVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEM-- 388
Query: 106 RKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
+ KG V P + + ++ AC C+ +++ G+ VH + K G N+ +T +LIN Y K
Sbjct: 389 QSKG----VRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAK 444
Query: 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
+E+A VFS++ + V W I + ++ F +M +++ K + T + V
Sbjct: 445 CGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNLLPNEALELFLDM-QKQFKPDDITMACV 503
Query: 225 LKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
L AC G+ GR++H +I++ G SD +V C LVDMY KC LL A+ +F++I KK
Sbjct: 504 LPACAGLAALDK-GREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMI-PKK 561
Query: 285 NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
++ SW M+ GY +G EA M+ +GI+ ES + + ACS
Sbjct: 562 DLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSAILNACS 609
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 84/294 (28%), Positives = 141/294 (47%), Gaps = 23/294 (7%)
Query: 51 RLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGH 110
+L+ M+V+CG L R++FD++ W +++ Y + +++E ++LF +M K
Sbjct: 134 KLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQK----- 188
Query: 111 MLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
+ +V + CVLK ++ K+VHG + KLG N ++ SLI Y KF +E
Sbjct: 189 LGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVES 248
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRE--------RIKKNSYTFS 222
A +F +L + V W + ++N C V N F G E ++ + T
Sbjct: 249 AHNLFDELSEPDVVSWNS-MINGC-------VVNGFSGNGLEIFIQMLILGVEVDLTTLV 300
Query: 223 SVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282
SVL AC + + + GR +H VK + L+DMY KC L A VF + D
Sbjct: 301 SVLVACANIGNL-SLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGD 359
Query: 283 KKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
I SW +++ Y+R GLY +A M++ G++ + + AC+ S+
Sbjct: 360 -TTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSS 412
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 83/283 (29%), Positives = 137/283 (48%), Gaps = 13/283 (4%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
+N L+ + G +++A LFDE+ D SW MI G V + +F +M+
Sbjct: 233 VNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLI--- 289
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+ + +V VL AC N+ LG+ +HG K S + + +L++ Y K L
Sbjct: 290 --LGVEVDLTTLVSVLVACANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNL 347
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
A VF ++ V WT+ I REG + F EM + ++ + YT +S++ AC
Sbjct: 348 NGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHAC 407
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
+ GR +H+ ++K G+ S+ V L++MY KC + +A VF I K+I S
Sbjct: 408 -ACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKI-PVKDIVS 465
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
WN M+ GY +N L EA + M+ ++ +D+ +AC
Sbjct: 466 WNTMIGGYSQNLLPNEALELFLDMQ------KQFKPDDITMAC 502
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 122/253 (48%), Gaps = 12/253 (4%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L N L+ M+ CG ++ AR +F ++P++D SW MI GY E + LF +M K
Sbjct: 432 LPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNLLPNEALELFLDMQK 491
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
+ K + + CVL AC ++ G+++HG + + G ++ + +L++ Y K
Sbjct: 492 QFKPDDI------TMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKC 545
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
L A +F + + + + WT I G ++ + F EM I+ + +FS++L
Sbjct: 546 GLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSAIL 605
Query: 226 KAC--GGVDDDGNCGRQMHANIVKIGLESD-EYVQCGLVDMYGKCRLLRDAERVFELIVD 282
AC G+ ++G + ++ + G+E E+ C +VD+ + L A + E +
Sbjct: 606 NACSHSGLLNEG--WKFFNSMRNECGVEPKLEHYAC-VVDLLARMGNLSKAYKFIESMPI 662
Query: 283 KKNIASWNAMLVG 295
K + W +L G
Sbjct: 663 KPDTTIWGVLLSG 675
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 101/212 (47%), Gaps = 2/212 (0%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
VL+ C ++E GK+VH ++ G S + +L L+ Y L +F ++
Sbjct: 100 VLQLCAEKKSLEDGKRVHSVIISNGISVDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDK 159
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
+W + + G+F + + FK+M + + N YTF+ VLK + C R +H
Sbjct: 160 VFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKR-VH 218
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
++K+G S+ V L+ Y K + A +F+ + + ++ SWN+M+ G + NG
Sbjct: 219 GYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDEL-SEPDVVSWNSMINGCVVNGFS 277
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIACSSI 334
+ M G+++ + + + +AC++I
Sbjct: 278 GNGLEIFIQMLILGVEVDLTTLVSVLVACANI 309
>gi|356515406|ref|XP_003526391.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
mitochondrial-like [Glycine max]
Length = 647
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 104/329 (31%), Positives = 161/329 (48%), Gaps = 24/329 (7%)
Query: 12 MYTCLIKECT----FQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQ 67
+Y L+K CT ++ F +LN N K L+ N LL M+ CG L+ AR+
Sbjct: 76 LYNTLLKRCTQLGKLKEGKLVHFHVLNS-----NFKHDLVIQNSLLFMYARCGSLEGARR 130
Query: 68 LFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCVLKA 126
LFDEMP RD SW MI GY + + LF M+ P + + ++K
Sbjct: 131 LFDEMPHRDMVSWTSMITGYAQNDRASDALLLFPRMLSDG------AEPNEFTLSSLVKC 184
Query: 127 CVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVW 186
C + G+Q+H +K G N+ + SL++ Y + L +A VF +L N V W
Sbjct: 185 CGYMASYNCGRQIHACCWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKLGCKNEVSW 244
Query: 187 TAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC---GRQMHA 243
A I R+G + F M RE + +T+S++L +C + C G+ +HA
Sbjct: 245 NALIAGYARKGEGEEALALFVRMQREGYRPTEFTYSALLSSCSSM----GCLEQGKWLHA 300
Query: 244 NIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYV 303
+++K + YV L+ MY K +RDAE+VF+ +V K ++ S N+ML+GY ++GL
Sbjct: 301 HLMKSSQKLVGYVGNTLLHMYAKSGSIRDAEKVFDKLV-KVDVVSCNSMLIGYAQHGLGK 359
Query: 304 EATKFLYLMKASGIQIQESLINDLRIACS 332
EA + M GI+ + + ACS
Sbjct: 360 EAAQQFDEMIRFGIEPNDITFLSVLTACS 388
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 102/212 (48%), Gaps = 2/212 (0%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
+LK C ++ GK VH + ++ + SL+ Y + LE A +F ++ +
Sbjct: 80 LLKRCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSLLFMYARCGSLEGARRLFDEMPHRD 139
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
V WT+ I + F M + + N +T SS++K CG + NCGRQ+H
Sbjct: 140 MVSWTSMITGYAQNDRASDALLLFPRMLSDGAEPNEFTLSSLVKCCGYMASY-NCGRQIH 198
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
A K G S+ +V LVDMY +C L +A VF+ + KN SWNA++ GY R G
Sbjct: 199 ACCWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKL-GCKNEVSWNALIAGYARKGEG 257
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIACSSI 334
EA M+ G + E + L +CSS+
Sbjct: 258 EEALALFVRMQREGYRPTEFTYSALLSSCSSM 289
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 112/248 (45%), Gaps = 14/248 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+ L+ M+ CG L A +FD++ ++ SW +I GY + +E + LF M +
Sbjct: 214 SSLVDMYARCGYLGEAMLVFDKLGCKNEVSWNALIAGYARKGEGEEALALFVRMQREGYR 273
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTG-SLINFYGKFRCL 168
+ A + C C +E GK +H L K S + + G +L++ Y K +
Sbjct: 274 PTEFTYSALLSSCSSMGC-----LEQGKWLHAHLMK-SSQKLVGYVGNTLLHMYAKSGSI 327
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
DA+ VF +L + + V + ++ + G + F EM R I+ N TF SVL AC
Sbjct: 328 RDAEKVFDKLVKVDVVSCNSMLIGYAQHGLGKEAAQQFDEMIRFGIEPNDITFLSVLTAC 387
Query: 229 GG---VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
+D+ G+ + K +E +VD+ G+ LL A+ E + +
Sbjct: 388 SHARLLDE----GKHYFGLMRKYNIEPKVSHYATIVDLLGRAGLLDQAKSFIEEMPIEPT 443
Query: 286 IASWNAML 293
+A W A+L
Sbjct: 444 VAIWGALL 451
Score = 45.1 bits (105), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYI 297
G+ +H +++ + D +Q L+ MY +C L A R+F+ + +++ SW +M+ GY
Sbjct: 93 GKLVHFHVLNSNFKHDLVIQNSLLFMYARCGSLEGARRLFDEM-PHRDMVSWTSMITGYA 151
Query: 298 RNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+N +A M + G + E ++ L C +++
Sbjct: 152 QNDRASDALLLFPRMLSDGAEPNEFTLSSLVKCCGYMAS 190
>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
Length = 764
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 96/325 (29%), Positives = 159/325 (48%), Gaps = 11/325 (3%)
Query: 10 TDMYT--CLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQ 67
+MYT ++K C + D + + K I P N L+ ++ CG + A +
Sbjct: 189 PNMYTFISILKTCASKGDLNEGKAIHGQVIKS-GINPDSHLWNSLVNVYAKCGSANYACK 247
Query: 68 LFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKAC 127
+F E+P RD SW +I G+V Y + +F +M+ + F + +L++C
Sbjct: 248 VFGEIPERDVVSWTALITGFV-AEGYGSGLRIFNQMLAEGFNPNMYTF-----ISILRSC 301
Query: 128 VCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWT 187
+++LGKQVH + K N + +L++ Y K R LEDA+ +F++L + + WT
Sbjct: 302 SSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWT 361
Query: 188 AKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVK 247
+ ++G + F +M RE +K N +T +S L C + + GRQ+H+ +K
Sbjct: 362 VIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATL-DSGRQLHSMAIK 420
Query: 248 IGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATK 307
G D +V LVDMY KC + DAE VF+ +V + + SWN ++ GY ++G +A K
Sbjct: 421 AGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTV-SWNTIICGYSQHGQGGKALK 479
Query: 308 FLYLMKASGIQIQESLINDLRIACS 332
M G E + ACS
Sbjct: 480 AFEAMLDEGTVPDEVTFIGVLSACS 504
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/298 (26%), Positives = 141/298 (47%), Gaps = 8/298 (2%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
+ + +L N + M++ ++ Q F M + + S ++ G+ D +
Sbjct: 118 KYGFESDILISNAFVTMYMKTQSVENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPR 177
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
+ +++ + F + +LK C ++ GK +HG + K G + + L SL
Sbjct: 178 ILIQLLVEGFEPNMYTF-----ISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSL 232
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
+N Y K A VF ++ + V WTA I EG + F +M E N
Sbjct: 233 VNVYAKCGSANYACKVFGEIPERDVVSWTALITGFVAEG-YGSGLRIFNQMLAEGFNPNM 291
Query: 219 YTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE 278
YTF S+L++C + D + G+Q+HA IVK L+ +++V LVDMY K R L DAE +F
Sbjct: 292 YTFISILRSCSSLSDV-DLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFN 350
Query: 279 LIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
++ K+++ +W ++ GY ++G +A K M+ G++ E + CS I+
Sbjct: 351 RLI-KRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIAT 407
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 75/295 (25%), Positives = 130/295 (44%), Gaps = 10/295 (3%)
Query: 42 IKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFA 101
I P + L+ ++V C L ARQ+ +EMP++D W + QE + LF
Sbjct: 20 ICPDSHLWSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANSPYPLQEAVQLFY 79
Query: 102 EMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINF 161
M H + +I ++ A + G+ +H + K G +I ++ + +
Sbjct: 80 LMR-----HTRIRLNQFIFASLISAAASLGDNHYGESIHACVCKYGFESDILISNAFVTM 134
Query: 162 YGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTF 221
Y K + +E+ F + N + C Q ++ E + N YTF
Sbjct: 135 YMKTQSVENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFEPNMYTF 194
Query: 222 SSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIV 281
S+LK C D N G+ +H ++K G+ D ++ LV++Y KC A +VF I
Sbjct: 195 ISILKTCAS-KGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEI- 252
Query: 282 DKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQ-ESLINDLRIACSSIS 335
++++ SW A++ G++ G Y + M A G + I+ LR +CSS+S
Sbjct: 253 PERDVVSWTALITGFVAEG-YGSGLRIFNQMLAEGFNPNMYTFISILR-SCSSLS 305
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 73/154 (47%), Gaps = 2/154 (1%)
Query: 143 LFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQV 202
+ K G + L SL+N Y K L+ A V ++ + W K+ + +
Sbjct: 15 VIKNGICPDSHLWSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANSPYPLQEA 74
Query: 203 FNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVD 262
F M RI+ N + F+S++ A + D+ + G +HA + K G ESD + V
Sbjct: 75 VQLFYLMRHTRIRLNQFIFASLISAAASLGDN-HYGESIHACVCKYGFESDILISNAFVT 133
Query: 263 MYGKCRLLRDAERVFELIVDKKNIASWNAMLVGY 296
MY K + + + + F+ ++ +N+AS N +L G+
Sbjct: 134 MYMKTQSVENGWQFFKAMM-IENLASRNNLLSGF 166
Score = 38.5 bits (88), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 245 IVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVE 304
++K G+ D ++ LV++Y KC L+ A +V E + +++ WN L E
Sbjct: 15 VIKNGICPDSHLWSSLVNVYVKCESLQCARQVLEEM-PIQDVQQWNQKLSSANSPYPLQE 73
Query: 305 ATKFLYLMKASGIQIQESLINDLRIACSSI 334
A + YLM+ + I++ + + L A +S+
Sbjct: 74 AVQLFYLMRHTRIRLNQFIFASLISAAASL 103
>gi|224084768|ref|XP_002307403.1| predicted protein [Populus trichocarpa]
gi|222856852|gb|EEE94399.1| predicted protein [Populus trichocarpa]
Length = 472
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 98/319 (30%), Positives = 165/319 (51%), Gaps = 8/319 (2%)
Query: 16 LIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLR 75
++K C +K ++ I K++ K + L+ M+ CG++ + ++F+ M R
Sbjct: 147 ILKACGEEKALKFGKQIHGAIVKKM-YKDDVFVGTSLVDMYAKCGEVSDSSKVFNGMRRR 205
Query: 76 DFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMEL 135
+ +W +I GY +E I LF MM+R+ +V IV +L+AC +
Sbjct: 206 NTVTWTSIIAGYARKGLGEEAICLFRLMMRRR-----VVSNNLTIVSMLRACGLIGALLA 260
Query: 136 GKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCR 195
G++VH + K S N L +L+ FY K A V Q+ + V WTA I +
Sbjct: 261 GREVHAQIIKNCSQSNEYLGSTLVWFYCKCGESRTASKVLQQMPFRDVVSWTAIISGHAC 320
Query: 196 EGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEY 255
GH + KEM E ++ NS+T+SS LKAC ++ G+ +H++ K S+ +
Sbjct: 321 LGHESEALEFLKEMMEEGVEPNSFTYSSALKACANLETVLQ-GKLIHSSANKTPASSNVF 379
Query: 256 VQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKAS 315
V L+ MY +C + +A +VF+ + ++N+ +W AM++GY+RNGL EA K +Y M+A
Sbjct: 380 VGSALIHMYARCGYVSEAIQVFDSM-PERNLVTWRAMIMGYVRNGLCQEALKLMYRMQAE 438
Query: 316 GIQIQESLINDLRIACSSI 334
GIQ+ + + + AC I
Sbjct: 439 GIQVDDYISAKVLGACGEI 457
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 97/328 (29%), Positives = 162/328 (49%), Gaps = 15/328 (4%)
Query: 10 TDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPT---LLFLNRLLLMHVSCGQLDTAR 66
+ + C++ C+ + D FEL + RV +K L+ + ++ +V CG L +A
Sbjct: 41 SKTFVCVLNLCSRRLD----FELGRQVHARV-VKGNWRNLIVDSAVVYFYVQCGDLKSAF 95
Query: 67 QLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKA 126
+FD M RD SW MI E +F +M+ G + F A +LKA
Sbjct: 96 CVFDRMVERDVVSWTTMITACSQQGRCGEAFGMFTQMLN--GGFLPNGFTA---SGILKA 150
Query: 127 CVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVW 186
C ++ GKQ+HG + K ++ + SL++ Y K + D+ VF+ ++R NTV W
Sbjct: 151 CGEEKALKFGKQIHGAIVKKMYKDDVFVGTSLVDMYAKCGEVSDSSKVFNGMRRRNTVTW 210
Query: 187 TAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIV 246
T+ I R+G + F+ M R R+ N+ T S+L+ACG + GR++HA I+
Sbjct: 211 TSIIAGYARKGLGEEAICLFRLMMRRRVVSNNLTIVSMLRACGLIGAL-LAGREVHAQII 269
Query: 247 KIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEAT 306
K +S+EY+ LV Y KC R A +V + + +++ SW A++ G+ G EA
Sbjct: 270 KNCSQSNEYLGSTLVWFYCKCGESRTASKVLQQM-PFRDVVSWTAIISGHACLGHESEAL 328
Query: 307 KFLYLMKASGIQIQESLINDLRIACSSI 334
+FL M G++ + AC+++
Sbjct: 329 EFLKEMMEEGVEPNSFTYSSALKACANL 356
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 84/265 (31%), Positives = 130/265 (49%), Gaps = 8/265 (3%)
Query: 72 MPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTM 131
MP R+ SW MI GY E ++ F++ +K +V + VCVL C +
Sbjct: 1 MPERNVVSWTAMINGYFKFGLDDEALSYFSQAIKDG-----VVPNSKTFVCVLNLCSRRL 55
Query: 132 NMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIV 191
+ ELG+QVH + K G+ RN+ + +++ FY + L+ A VF ++ + V WT I
Sbjct: 56 DFELGRQVHARVVK-GNWRNLIVDSAVVYFYVQCGDLKSAFCVFDRMVERDVVSWTTMIT 114
Query: 192 NNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLE 251
++G + F F +M N +T S +LKACG + G+Q+H IVK +
Sbjct: 115 ACSQQGRCGEAFGMFTQMLNGGFLPNGFTASGILKACG-EEKALKFGKQIHGAIVKKMYK 173
Query: 252 SDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYL 311
D +V LVDMY KC + D+ +VF + ++N +W +++ GY R GL EA L
Sbjct: 174 DDVFVGTSLVDMYAKCGEVSDSSKVFNGM-RRRNTVTWTSIIAGYARKGLGEEAICLFRL 232
Query: 312 MKASGIQIQESLINDLRIACSSISA 336
M + I + AC I A
Sbjct: 233 MMRRRVVSNNLTIVSMLRACGLIGA 257
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 83/186 (44%), Gaps = 7/186 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ + CG+ TA ++ +MP RD SW +I G+ + E + EMM+
Sbjct: 283 LVWFYCKCGESRTASKVLQQMPFRDVVSWTAIISGHACLGHESEALEFLKEMMEEG---- 338
Query: 112 LLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
V P ++ LKAC + GK +H K +S N+ + +LI+ Y + + +
Sbjct: 339 --VEPNSFTYSSALKACANLETVLQGKLIHSSANKTPASSNVFVGSALIHMYARCGYVSE 396
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
A VF + N V W A I+ R G + M E I+ + Y + VL ACG
Sbjct: 397 AIQVFDSMPERNLVTWRAMIMGYVRNGLCQEALKLMYRMQAEGIQVDDYISAKVLGACGE 456
Query: 231 VDDDGN 236
++ D
Sbjct: 457 IEWDAG 462
>gi|147770672|emb|CAN62482.1| hypothetical protein VITISV_010810 [Vitis vinifera]
Length = 704
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 95/310 (30%), Positives = 154/310 (49%), Gaps = 8/310 (2%)
Query: 8 ITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQ 67
+ ++ Y L+ C K G ++ N++ + P NR+LLMHV CG + AR+
Sbjct: 129 MDSETYDALVSACIGLKSIRGVKKVFNYMINS-GLDPDEYLRNRVLLMHVKCGMMIDARR 187
Query: 68 LFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKAC 127
LFDEMP ++ SW +I G VD DY E LF M + +F V +++A
Sbjct: 188 LFDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQXFSDAGSRMF-----VTMIRAS 242
Query: 128 VCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWT 187
+ G+Q+H K G ++ + +LI+ Y K +EDA VF Q+ TV W
Sbjct: 243 AGLGLIFAGRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQMPEKTTVGWN 302
Query: 188 AKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVK 247
+ I G+ + + + EM +K +++TFS +++ C + + +Q HA +V+
Sbjct: 303 SIIAGYALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASLEH-AKQAHAGLVR 361
Query: 248 IGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATK 307
G D LVD+Y K + DA+ VF+++ KN+ SWNA++ GY +G VEA +
Sbjct: 362 HGFGLDIVANTALVDLYSKWGRIEDAKHVFDMM-PHKNVISWNALIAGYGNHGRGVEAVE 420
Query: 308 FLYLMKASGI 317
M G+
Sbjct: 421 MFERMLHEGM 430
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 96/198 (48%), Gaps = 2/198 (1%)
Query: 122 CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH 181
++ AC+ ++ K+V + G + L ++ + K + DA +F ++
Sbjct: 136 ALVSACIGLKSIRGVKKVFNYMINSGLDPDEYLRNRVLLMHVKCGMMIDARRLFDEMPEK 195
Query: 182 NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQM 241
N + W I G + + F F M + S F ++++A G+ GRQ+
Sbjct: 196 NILSWNTIIGGLVDAGDYFEAFRLFLMMWQXFSDAGSRMFVTMIRASAGLGLI-FAGRQL 254
Query: 242 HANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGL 301
H+ +K G+ D +V C L+DMY KC + DA+ VF+ + +K + WN+++ GY +G
Sbjct: 255 HSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQMPEKTTVG-WNSIIAGYALHGY 313
Query: 302 YVEATKFLYLMKASGIQI 319
EA Y M+ SG++I
Sbjct: 314 SEEALSMYYEMRDSGVKI 331
>gi|255545590|ref|XP_002513855.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223546941|gb|EEF48438.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 498
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 96/288 (33%), Positives = 151/288 (52%), Gaps = 8/288 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ ++ G+L AR++FD+M R SW MI GYV E + LF+E+++
Sbjct: 5 NNLISVYARLGELIEARKVFDQMHERCVVSWTAMINGYVSFGLDDEALRLFSELIENGVT 64
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
F VC+L C ++ ELG+Q+H + K G+ RN+ + ++++FY + LE
Sbjct: 65 ANNRTF-----VCILNVCSKRLDFELGRQIHACVVK-GNWRNLIVDSAIVSFYAQCGDLE 118
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A F Q++ + V WT+ I ++G + F F +M E N +T ++LKACG
Sbjct: 119 SAFCAFFQVREKDVVCWTSVISACSQQGRGEEAFRMFSQMLGEGFLPNEFTVCAILKACG 178
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
GRQ+H IVK + D ++ LVDMY KC + D++ VF+ + K+N +W
Sbjct: 179 E-KKALKFGRQLHCAIVKGMYKDDVFIGTSLVDMYAKCGEMIDSKEVFDGM-RKRNTVTW 236
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISAS 337
+++ GY R GL EA + +MK I + + AC SISAS
Sbjct: 237 TSIIAGYARKGLGEEAIRLFRVMKRRKIISNNLTVVSVLRACGSISAS 284
Score = 147 bits (372), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 93/292 (31%), Positives = 149/292 (51%), Gaps = 7/292 (2%)
Query: 43 KPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAE 102
K + L+ M+ CG++ ++++FD M R+ +W +I GY +E I LF
Sbjct: 199 KDDVFIGTSLVDMYAKCGEMIDSKEVFDGMRKRNTVTWTSIIAGYARKGLGEEAIRLF-R 257
Query: 103 MMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFY 162
+MKR+K ++ +V VL+AC G++VH + K G N+ L +L+ FY
Sbjct: 258 VMKRRK----IISNNLTVVSVLRACGSISASLTGREVHAQIIKSGIQSNVYLGSTLVWFY 313
Query: 163 GKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFS 222
K A V Q+ N V WTA I G+ + KEM E ++ N +T+S
Sbjct: 314 CKCGEFNIASKVLQQMSFRNVVSWTAMISGYIGLGYEFEALEFLKEMMDEGVEPNEFTYS 373
Query: 223 SVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282
S LKAC ++ G+ +H+ K S+ YV L+ MY KC L DA +VF+ +
Sbjct: 374 SALKACANLESVLQ-GKLIHSFANKTPASSNVYVGSALIYMYSKCGYLSDAIQVFDSM-P 431
Query: 283 KKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
++N+ SW M++ Y RNGL EA K +Y M+A GI++ + + + +C +
Sbjct: 432 ERNLISWKTMILSYARNGLCREALKLMYRMQAEGIEVDDYIYASVMGSCGDV 483
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 95/328 (28%), Positives = 162/328 (49%), Gaps = 17/328 (5%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPT---LLFLNRLLLMHVSCGQLDTARQLF 69
+ C++ C+ + D FEL I V +K L+ + ++ + CG L++A F
Sbjct: 70 FVCILNVCSKRLD----FELGRQIHACV-VKGNWRNLIVDSAIVSFYAQCGDLESAFCAF 124
Query: 70 DEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVC-VLKACV 128
++ +D W +I +E +F++M+ G L P VC +LKAC
Sbjct: 125 FQVREKDVVCWTSVISACSQQGRGEEAFRMFSQML----GEGFL--PNEFTVCAILKACG 178
Query: 129 CTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTA 188
++ G+Q+H + K ++ + SL++ Y K + D+ VF +++ NTV WT+
Sbjct: 179 EKKALKFGRQLHCAIVKGMYKDDVFIGTSLVDMYAKCGEMIDSKEVFDGMRKRNTVTWTS 238
Query: 189 KIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKI 248
I R+G + F+ M R +I N+ T SVL+ACG + GR++HA I+K
Sbjct: 239 IIAGYARKGLGEEAIRLFRVMKRRKIISNNLTVVSVLRACGSISASLT-GREVHAQIIKS 297
Query: 249 GLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKF 308
G++S+ Y+ LV Y KC A +V + + +N+ SW AM+ GYI G EA +F
Sbjct: 298 GIQSNVYLGSTLVWFYCKCGEFNIASKVLQQM-SFRNVVSWTAMISGYIGLGYEFEALEF 356
Query: 309 LYLMKASGIQIQESLINDLRIACSSISA 336
L M G++ E + AC+++ +
Sbjct: 357 LKEMMDEGVEPNEFTYSSALKACANLES 384
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 86/194 (44%), Gaps = 5/194 (2%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
+ I+ + + L+ + CG+ + A ++ +M R+ SW MI GY+ + E +
Sbjct: 296 KSGIQSNVYLGSTLVWFYCKCGEFNIASKVLQQMSFRNVVSWTAMISGYIGLGYEFEALE 355
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
EMM + + LKAC ++ GK +H K +S N+ + +L
Sbjct: 356 FLKEMMDEGVEPNEFTYSS-----ALKACANLESVLQGKLIHSFANKTPASSNVYVGSAL 410
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
I Y K L DA VF + N + W I++ R G + M E I+ +
Sbjct: 411 IYMYSKCGYLSDAIQVFDSMPERNLISWKTMILSYARNGLCREALKLMYRMQAEGIEVDD 470
Query: 219 YTFSSVLKACGGVD 232
Y ++SV+ +CG VD
Sbjct: 471 YIYASVMGSCGDVD 484
>gi|297734415|emb|CBI15662.3| unnamed protein product [Vitis vinifera]
Length = 657
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 95/310 (30%), Positives = 154/310 (49%), Gaps = 8/310 (2%)
Query: 8 ITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQ 67
+ ++ Y L+ C K G ++ N++ + P NR+LLMHV CG + AR+
Sbjct: 129 MDSETYDALVSACIGLKSIRGVKKVFNYMINS-GLDPDEYLRNRVLLMHVKCGMMIDARR 187
Query: 68 LFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKAC 127
LFDEMP ++ SW +I G VD DY E LF M + +F V +++A
Sbjct: 188 LFDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQDFSDAGSRMF-----VTMIRAS 242
Query: 128 VCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWT 187
+ G+Q+H K G ++ + +LI+ Y K +EDA VF Q+ TV W
Sbjct: 243 AGLGLIFAGRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQMPEKTTVGWN 302
Query: 188 AKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVK 247
+ I G+ + + + EM +K +++TFS +++ C + + +Q HA +V+
Sbjct: 303 SIIAGYALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASLEH-AKQAHAGLVR 361
Query: 248 IGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATK 307
G D LVD+Y K + DA+ VF+++ KN+ SWNA++ GY +G VEA +
Sbjct: 362 HGFGLDIVANTALVDLYSKWGRIEDAKHVFDMM-PHKNVISWNALIAGYGNHGRGVEAVE 420
Query: 308 FLYLMKASGI 317
M G+
Sbjct: 421 MFERMLHEGM 430
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 97/198 (48%), Gaps = 2/198 (1%)
Query: 122 CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH 181
++ AC+ ++ K+V + G + L ++ + K + DA +F ++
Sbjct: 136 ALVSACIGLKSIRGVKKVFNYMINSGLDPDEYLRNRVLLMHVKCGMMIDARRLFDEMPEK 195
Query: 182 NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQM 241
N + W I G + + F F M ++ S F ++++A G+ GRQ+
Sbjct: 196 NILSWNTIIGGLVDAGDYFEAFRLFLMMWQDFSDAGSRMFVTMIRASAGLGLI-FAGRQL 254
Query: 242 HANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGL 301
H+ +K G+ D +V C L+DMY KC + DA+ VF+ + +K + WN+++ GY +G
Sbjct: 255 HSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQMPEKTTVG-WNSIIAGYALHGY 313
Query: 302 YVEATKFLYLMKASGIQI 319
EA Y M+ SG++I
Sbjct: 314 SEEALSMYYEMRDSGVKI 331
>gi|296088174|emb|CBI35666.3| unnamed protein product [Vitis vinifera]
Length = 762
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 93/334 (27%), Positives = 170/334 (50%), Gaps = 10/334 (2%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCG 60
MD+ + +T Y CL + C + A + + +R+ V P+ N LL M+ CG
Sbjct: 78 MDDADVSVTPHSYQCLFEACGKLRSLADGRLIHDRLRRTVK-NPSGSIENCLLRMYCDCG 136
Query: 61 QLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWI 119
+++FDEM +++ SW ++I Y + ++ I LF++M + P + +
Sbjct: 137 SCIDVQKVFDEMLMKNLVSWVIVISAYAKNGELEKAIRLFSDMQASG------IRPNSAV 190
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
+ +L++C+ +ELGKQ+H + + + NI++ ++ N Y + LE A VF +
Sbjct: 191 YMSLLQSCLGPSFLELGKQIHSHVIRAQLNANITVETAICNMYVRCGWLEGAKLVFDGMD 250
Query: 180 RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGR 239
N V WT +V + F M E ++ + + FS VLK C G+ +D + GR
Sbjct: 251 AQNAVTWTGLMVGYTQAKKLEVALELFARMAMEGVELDEFVFSIVLKVCCGL-EDWDMGR 309
Query: 240 QMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRN 299
Q+H++IVK+G ES+ V LVD Y KC + A R F I + ++ SW+A++ G+ ++
Sbjct: 310 QIHSHIVKLGAESEVSVGTPLVDFYVKCGDIESAYRSFGRISEPNDV-SWSALISGFSQS 368
Query: 300 GLYVEATKFLYLMKASGIQIQESLINDLRIACSS 333
G + K +++ G+ + + + AC++
Sbjct: 369 GRLEDCIKIFTSLRSEGVVLNSFIYTSVFQACAA 402
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 83/278 (29%), Positives = 135/278 (48%), Gaps = 7/278 (2%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+V CG L+ A+ +FD M ++ +W ++VGY + + LFA M +
Sbjct: 232 MYVRCGWLEGAKLVFDGMDAQNAVTWTGLMVGYTQAKKLEVALELFARMAMEG-----VE 286
Query: 115 FPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFV 174
++ VLK C + ++G+Q+H + KLG+ +S+ L++FY K +E A
Sbjct: 287 LDEFVFSIVLKVCCGLEDWDMGRQIHSHIVKLGAESEVSVGTPLVDFYVKCGDIESAYRS 346
Query: 175 FSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDD 234
F ++ N V W+A I + G F + E + NS+ ++SV +AC +
Sbjct: 347 FGRISEPNDVSWSALISGFSQSGRLEDCIKIFTSLRSEGVVLNSFIYTSVFQACAA-QAN 405
Query: 235 GNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLV 294
N G Q H + +K GL S Y + +V MY KC L A R FE I D+ + +W A++
Sbjct: 406 LNMGSQAHGDAIKRGLVSYLYGESAMVTMYSKCGRLDYARRAFESI-DEPDAVAWTAIIS 464
Query: 295 GYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
GY +G EA F M++ G++ + ACS
Sbjct: 465 GYAYHGNAAEALGFFRRMQSYGVRPNAVTFIAVLTACS 502
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/285 (22%), Positives = 130/285 (45%), Gaps = 8/285 (2%)
Query: 12 MYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDE 71
+++ ++K C +D ++ +HI K + + + L+ +V CG +++A + F
Sbjct: 291 VFSIVLKVCCGLEDWDMGRQIHSHIVK-LGAESEVSVGTPLVDFYVKCGDIESAYRSFGR 349
Query: 72 MPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTM 131
+ + SW+ +I G+ ++CI +F + R +G +V ++I V +AC
Sbjct: 350 ISEPNDVSWSALISGFSQSGRLEDCIKIFTSL--RSEG---VVLNSFIYTSVFQACAAQA 404
Query: 132 NMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIV 191
N+ +G Q HG K G + +++ Y K L+ A F + + V WTA I
Sbjct: 405 NLNMGSQAHGDAIKRGLVSYLYGESAMVTMYSKCGRLDYARRAFESIDEPDAVAWTAIIS 464
Query: 192 NNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLE 251
G+ + F+ M ++ N+ TF +VL AC + + + G++
Sbjct: 465 GYAYHGNAAEALGFFRRMQSYGVRPNAVTFIAVLTACSHSGLVAEAKQYLGSMSRDYGVK 524
Query: 252 SD-EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
++ C ++D Y + LL++A + + + + SW ++L G
Sbjct: 525 PTIDHYDC-MIDTYSRAGLLQEALELINRMPFEPDAMSWKSLLGG 568
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 89/194 (45%), Gaps = 20/194 (10%)
Query: 148 SSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKI----------VNNCREG 197
S+RN + T S NF + +V LKR ++ + T KI V+ ++G
Sbjct: 15 STRNQTSTSSSANF------AQIPSWV--SLKRSSSTIKTEKIQQGKLENLHLVSLSKQG 66
Query: 198 HFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQ 257
+ + KEM + +++ + +ACG + + GR +H + + ++
Sbjct: 67 KLKEAHDFLKEMDDADVSVTPHSYQCLFEACGKLRSLAD-GRLIHDRLRRTVKNPSGSIE 125
Query: 258 CGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGI 317
L+ MY C D ++VF+ ++ KN+ SW ++ Y +NG +A + M+ASGI
Sbjct: 126 NCLLRMYCDCGSCIDVQKVFDEML-MKNLVSWVIVISAYAKNGELEKAIRLFSDMQASGI 184
Query: 318 QIQESLINDLRIAC 331
+ ++ L +C
Sbjct: 185 RPNSAVYMSLLQSC 198
>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
Length = 786
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 92/326 (28%), Positives = 163/326 (50%), Gaps = 10/326 (3%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
+ ++K CT KD ++ + I N L++++ CG AR LFD +
Sbjct: 13 FPSVLKACTVTKDLVLGKQV-HGIVVVTGFDSDEFVANSLVILYAKCGGFGDARSLFDAI 71
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTM 131
P R SW + YV + E ++LF +M+ + + P + + ++ C
Sbjct: 72 PDRSVVSWNALFSCYVHSDMHGEAVSLFHDMV------LSGIRPNEFSLSSMINVCTGLE 125
Query: 132 NMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIV 191
+ G+++HG L KLG + +L++ Y K LEDA VF ++ + + V W A I
Sbjct: 126 DSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSWNAIIA 185
Query: 192 NNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLE 251
+ H+ +EM + + N +T SS LKAC G+ GRQ+H++++K+ +
Sbjct: 186 GCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALR-ELGRQLHSSLIKMDMG 244
Query: 252 SDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYL 311
SD ++ GL+DMY KC + DA VF+L+ ++ IA WNA++ G+ +N EA L
Sbjct: 245 SDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIA-WNAVISGHSQNEEDEEAASLFPL 303
Query: 312 MKASGIQIQESLINDLRIACSSISAS 337
M GI ++ ++ + + +++ A+
Sbjct: 304 MHTEGIGFNQTTLSTVLKSIAALQAN 329
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 99/325 (30%), Positives = 153/325 (47%), Gaps = 12/325 (3%)
Query: 14 TCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMP 73
+ +I CT +DS ++ ++ K + N L+ M+ G L+ A +FDE+
Sbjct: 115 SSMINVCTGLEDSVQGRKIHGYLIK-LGYDSDAFSANALVDMYAKVGILEDASSVFDEIA 173
Query: 74 LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNM 133
D SW +I G V + + L EM K G +F + LKAC
Sbjct: 174 KPDIVSWNAIIAGCVLHEYHHRALELLREM--NKSGMCPNMF---TLSSALKACAGMALR 228
Query: 134 ELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNN 193
ELG+Q+H L K+ + L LI+ Y K ++DA VF + + + W A I +
Sbjct: 229 ELGRQLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGH 288
Query: 194 CREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESD 253
+ + + F M E I N T S+VLK+ + + C RQ+HA +K G E D
Sbjct: 289 SQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLKSIAALQANYMC-RQIHALSLKSGFEFD 347
Query: 254 EYVQCGLVDMYGKCRLLRDAERVFE--LIVDKKNIASWNAMLVGYIRNGLYVEATKFLYL 311
YV L+D YGKC + DA RVFE IVD + + +++ Y ++G EA +
Sbjct: 348 NYVVNSLIDTYGKCGHVEDATRVFEESPIVD---LVLFTSLVTAYAQDGQGEEALRLYLE 404
Query: 312 MKASGIQIQESLINDLRIACSSISA 336
M+ GI+ + + L AC+S+SA
Sbjct: 405 MQDRGIKPDSFVCSSLLNACASLSA 429
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 83/281 (29%), Positives = 133/281 (47%), Gaps = 7/281 (2%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ C +D AR +F MP RD +W +I G+ + +E +LF M G
Sbjct: 253 LIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLFPLMHTEGIG-- 310
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
F + VLK+ + +Q+H L K G + + SLI+ YGK +EDA
Sbjct: 311 ---FNQTTLSTVLKSIAALQANYMCRQIHALSLKSGFEFDNYVVNSLIDTYGKCGHVEDA 367
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
VF + + V++T+ + ++G + + EM IK +S+ SS+L AC +
Sbjct: 368 TRVFEESPIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNACASL 427
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
G+Q+H +I+K G SD + LV+MY KC + DA F I + I SW+A
Sbjct: 428 SAYEQ-GKQVHVHILKFGFMSDIFAGNSLVNMYAKCGSIEDASCAFSRI-PVRGIVSWSA 485
Query: 292 MLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
M+ G ++G EA + M G+ + + AC+
Sbjct: 486 MIGGLAQHGYGKEALQLFKQMLKVGVPPNHITLVSVLCACN 526
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 104/205 (50%), Gaps = 7/205 (3%)
Query: 113 LVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDAD 172
FP+ VLKAC T ++ LGKQVHG++ G + + SL+ Y K DA
Sbjct: 11 FAFPS-----VLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDAR 65
Query: 173 FVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVD 232
+F + + V W A + + F +M I+ N ++ SS++ C G++
Sbjct: 66 SLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGLE 125
Query: 233 DDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAM 292
D GR++H ++K+G +SD + LVDMY K +L DA VF+ I K +I SWNA+
Sbjct: 126 DSVQ-GRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIA-KPDIVSWNAI 183
Query: 293 LVGYIRNGLYVEATKFLYLMKASGI 317
+ G + + + A + L M SG+
Sbjct: 184 IAGCVLHEYHHRALELLREMNKSGM 208
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 111/247 (44%), Gaps = 9/247 (3%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
+N L+ + CG ++ A ++F+E P+ D + ++ Y +E + L+ EM R
Sbjct: 351 VNSLIDTYGKCGHVEDATRVFEESPIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRG- 409
Query: 109 GHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
+ P +++ +L AC E GKQVH + K G +I SL+N Y K
Sbjct: 410 -----IKPDSFVCSSLLNACASLSAYEQGKQVHVHILKFGFMSDIFAGNSLVNMYAKCGS 464
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
+EDA FS++ V W+A I + G+ + FK+M + + N T SVL A
Sbjct: 465 IEDASCAFSRIPVRGIVSWSAMIGGLAQHGYGKEALQLFKQMLKVGVPPNHITLVSVLCA 524
Query: 228 CGGVDDDGNCGRQMHANIVKIGLES-DEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
C ++ + G+E E+ C ++D+ G+ L A + + + N
Sbjct: 525 CNHAGLVAEAKHYFNSMKILFGIEPMQEHYAC-MIDLLGRAGKLEAAMELVNKMPFQANA 583
Query: 287 ASWNAML 293
W A+L
Sbjct: 584 LVWGALL 590
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 69/124 (55%), Gaps = 2/124 (1%)
Query: 214 IKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDA 273
IK N + F SVLKAC V D G+Q+H +V G +SDE+V LV +Y KC DA
Sbjct: 6 IKCNEFAFPSVLKAC-TVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDA 64
Query: 274 ERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSS 333
+F+ I D +++ SWNA+ Y+ + ++ EA + M SGI+ E ++ + C+
Sbjct: 65 RSLFDAIPD-RSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTG 123
Query: 334 ISAS 337
+ S
Sbjct: 124 LEDS 127
>gi|255568506|ref|XP_002525227.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535524|gb|EEF37193.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 420
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 96/304 (31%), Positives = 155/304 (50%), Gaps = 14/304 (4%)
Query: 1 MDNLCLPITTDMYTCLIKECT-FQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSC 59
+D L +Y L K+CT F K G + + R K L+ N +L M+ C
Sbjct: 72 IDRASLEPDRTLYHILFKKCTLFNKLKEGQLVHAHLLNSR--FKHDLVIQNTILNMYAKC 129
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR--KKGHMLLVFPA 117
G L AR++FD+MP++D +W +I GY ++ + LF +M+ + H L
Sbjct: 130 GNLGEARKVFDQMPVKDVVTWTALITGYSQHDRPKDALLLFPQMLTLGFRPNHFTLS--- 186
Query: 118 WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQ 177
+LKA + + G+ +H K G S N+ + +L++ Y + LE+A F+F
Sbjct: 187 ----SLLKASGVSPSDSNGRLLHAFCIKYGYSCNVYVGSALLDMYARSGHLEEALFIFDG 242
Query: 178 LKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC 237
L N V W A I R+G F+ F +M RE I+ +T+S VL AC +
Sbjct: 243 LPSRNEVSWNALIAGCARKGDQELAFSFFSKMLRENIQPTQFTYSIVLSACASIGSLEQ- 301
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYI 297
G+ +HA ++K G + ++V L+ MY K + DA +VF+ +V K+++ SWN+ML GY
Sbjct: 302 GKWVHALLIKSGAKLVDFVGNTLLGMYAKSGSIEDARKVFDGLV-KRDVVSWNSMLAGYA 360
Query: 298 RNGL 301
++GL
Sbjct: 361 QHGL 364
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 98/214 (45%), Gaps = 2/214 (0%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
+ K C ++ G+ VH L ++ + +++N Y K L +A VF Q+ +
Sbjct: 87 LFKKCTLFNKLKEGQLVHAHLLNSRFKHDLVIQNTILNMYAKCGNLGEARKVFDQMPVKD 146
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
V WTA I + F +M + N +T SS+LKA G D N GR +H
Sbjct: 147 VVTWTALITGYSQHDRPKDALLLFPQMLTLGFRPNHFTLSSLLKASGVSPSDSN-GRLLH 205
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
A +K G + YV L+DMY + L +A +F+ + +N SWNA++ G R G
Sbjct: 206 AFCIKYGYSCNVYVGSALLDMYARSGHLEEALFIFDGL-PSRNEVSWNALIAGCARKGDQ 264
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
A F M IQ + + + AC+SI +
Sbjct: 265 ELAFSFFSKMLRENIQPTQFTYSIVLSACASIGS 298
>gi|225456313|ref|XP_002280013.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
chloroplastic [Vitis vinifera]
Length = 704
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 95/310 (30%), Positives = 154/310 (49%), Gaps = 8/310 (2%)
Query: 8 ITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQ 67
+ ++ Y L+ C K G ++ N++ + P NR+LLMHV CG + AR+
Sbjct: 129 MDSETYDALVSACIGLKSIRGVKKVFNYMINS-GLDPDEYLRNRVLLMHVKCGMMIDARR 187
Query: 68 LFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKAC 127
LFDEMP ++ SW +I G VD DY E LF M + +F V +++A
Sbjct: 188 LFDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQDFSDAGSRMF-----VTMIRAS 242
Query: 128 VCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWT 187
+ G+Q+H K G ++ + +LI+ Y K +EDA VF Q+ TV W
Sbjct: 243 AGLGLIFAGRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQMPEKTTVGWN 302
Query: 188 AKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVK 247
+ I G+ + + + EM +K +++TFS +++ C + + +Q HA +V+
Sbjct: 303 SIIAGYALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASLEH-AKQAHAGLVR 361
Query: 248 IGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATK 307
G D LVD+Y K + DA+ VF+++ KN+ SWNA++ GY +G VEA +
Sbjct: 362 HGFGLDIVANTALVDLYSKWGRIEDAKHVFDMM-PHKNVISWNALIAGYGNHGRGVEAVE 420
Query: 308 FLYLMKASGI 317
M G+
Sbjct: 421 MFERMLHEGM 430
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 97/198 (48%), Gaps = 2/198 (1%)
Query: 122 CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH 181
++ AC+ ++ K+V + G + L ++ + K + DA +F ++
Sbjct: 136 ALVSACIGLKSIRGVKKVFNYMINSGLDPDEYLRNRVLLMHVKCGMMIDARRLFDEMPEK 195
Query: 182 NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQM 241
N + W I G + + F F M ++ S F ++++A G+ GRQ+
Sbjct: 196 NILSWNTIIGGLVDAGDYFEAFRLFLMMWQDFSDAGSRMFVTMIRASAGLGLI-FAGRQL 254
Query: 242 HANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGL 301
H+ +K G+ D +V C L+DMY KC + DA+ VF+ + +K + WN+++ GY +G
Sbjct: 255 HSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQMPEKTTVG-WNSIIAGYALHGY 313
Query: 302 YVEATKFLYLMKASGIQI 319
EA Y M+ SG++I
Sbjct: 314 SEEALSMYYEMRDSGVKI 331
>gi|224136143|ref|XP_002322250.1| predicted protein [Populus trichocarpa]
gi|222869246|gb|EEF06377.1| predicted protein [Populus trichocarpa]
Length = 548
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 87/263 (33%), Positives = 134/263 (50%), Gaps = 7/263 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
NR+LLMHV CG + AR+LFDEMP R+ SW +I G VDV D+ E LF M +
Sbjct: 14 NRVLLMHVKCGMMIDARRLFDEMPERNLVSWNTIISGLVDVGDFMEAFRLFLNMWEEFSD 73
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
F +++A + +G+Q+H K+G +I ++ +LI+ Y K +E
Sbjct: 74 AGSFTF-----AVMIRASAGLELISIGRQLHACTLKMGIGDDIFVSCALIDMYSKCGSIE 128
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
DA FVF ++ TV W I G+ + + + EM +K + +TFS +++ C
Sbjct: 129 DARFVFEEMPEKTTVGWNTIIAGYALHGYSEEALDMYYEMRDSGVKMDHFTFSMIVRICA 188
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ + +Q HA +++ G SD LVD Y K + DA VF+ + KN+ SW
Sbjct: 189 RLASVEHA-KQAHAALIRHGFGSDIVANTALVDFYSKWGRIEDARHVFDKMA-SKNVISW 246
Query: 290 NAMLVGYIRNGLYVEATKFLYLM 312
NA++ GY +G EA + M
Sbjct: 247 NALIGGYGNHGRGSEAVELFEQM 269
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 87/167 (52%), Gaps = 2/167 (1%)
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
DA +F ++ N V W I G F + F F M E S+TF+ +++A
Sbjct: 28 DARRLFDEMPERNLVSWNTIISGLVDVGDFMEAFRLFLNMWEEFSDAGSFTFAVMIRASA 87
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
G++ + GRQ+HA +K+G+ D +V C L+DMY KC + DA VFE + +K + W
Sbjct: 88 GLELI-SIGRQLHACTLKMGIGDDIFVSCALIDMYSKCGSIEDARFVFEEMPEKTTVG-W 145
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
N ++ GY +G EA Y M+ SG+++ + + C+ +++
Sbjct: 146 NTIIAGYALHGYSEEALDMYYEMRDSGVKMDHFTFSMIVRICARLAS 192
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 69/246 (28%), Positives = 114/246 (46%), Gaps = 9/246 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ CG ++ AR +F+EMP + W +I GY +E + ++ EM R G
Sbjct: 117 LIDMYSKCGSIEDARFVFEEMPEKTTVGWNTIIAGYALHGYSEEALDMYYEM--RDSGVK 174
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+ F +IV + C ++E KQ H L + G +I +L++FY K+ +EDA
Sbjct: 175 MDHFTFSMIV---RICARLASVEHAKQAHAALIRHGFGSDIVANTALVDFYSKWGRIEDA 231
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--G 229
VF ++ N + W A I G + F++M +ER+ N TF +VL AC
Sbjct: 232 RHVFDKMASKNVISWNALIGGYGNHGRGSEAVELFEQMIQERMNPNHITFLAVLSACSHS 291
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
G+ + G Q +I + Y C ++++ G+ LL +A + K W
Sbjct: 292 GLSERGWEIFQSMGRDNRIKPRAMHYA-C-MIELMGREGLLDEALALIRGAPFKPTANMW 349
Query: 290 NAMLVG 295
A+L
Sbjct: 350 AALLTA 355
Score = 41.2 bits (95), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 249 GLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKF 308
G E D+Y++ ++ M+ KC ++ DA R+F+ + + +N+ SWN ++ G + G ++EA +
Sbjct: 5 GFEFDQYMRNRVLLMHVKCGMMIDARRLFDEMPE-RNLVSWNTIISGLVDVGDFMEAFRL 63
Query: 309 LYLM 312
M
Sbjct: 64 FLNM 67
>gi|359473776|ref|XP_002267026.2| PREDICTED: pentatricopeptide repeat-containing protein At5g13270,
chloroplastic-like [Vitis vinifera]
Length = 835
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 93/334 (27%), Positives = 170/334 (50%), Gaps = 10/334 (2%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCG 60
MD+ + +T Y CL + C + A + + +R+ V P+ N LL M+ CG
Sbjct: 78 MDDADVSVTPHSYQCLFEACGKLRSLADGRLIHDRLRRTVK-NPSGSIENCLLRMYCDCG 136
Query: 61 QLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWI 119
+++FDEM +++ SW ++I Y + ++ I LF++M + P + +
Sbjct: 137 SCIDVQKVFDEMLMKNLVSWVIVISAYAKNGELEKAIRLFSDMQASG------IRPNSAV 190
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
+ +L++C+ +ELGKQ+H + + + NI++ ++ N Y + LE A VF +
Sbjct: 191 YMSLLQSCLGPSFLELGKQIHSHVIRAQLNANITVETAICNMYVRCGWLEGAKLVFDGMD 250
Query: 180 RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGR 239
N V WT +V + F M E ++ + + FS VLK C G+ +D + GR
Sbjct: 251 AQNAVTWTGLMVGYTQAKKLEVALELFARMAMEGVELDEFVFSIVLKVCCGL-EDWDMGR 309
Query: 240 QMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRN 299
Q+H++IVK+G ES+ V LVD Y KC + A R F I + ++ SW+A++ G+ ++
Sbjct: 310 QIHSHIVKLGAESEVSVGTPLVDFYVKCGDIESAYRSFGRISEPNDV-SWSALISGFSQS 368
Query: 300 GLYVEATKFLYLMKASGIQIQESLINDLRIACSS 333
G + K +++ G+ + + + AC++
Sbjct: 369 GRLEDCIKIFTSLRSEGVVLNSFIYTSVFQACAA 402
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 86/278 (30%), Positives = 137/278 (49%), Gaps = 7/278 (2%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+V CG L+ A+ +FD M ++ +W ++VGY + + LFA M +G L
Sbjct: 232 MYVRCGWLEGAKLVFDGMDAQNAVTWTGLMVGYTQAKKLEVALELFARMAM--EGVELDE 289
Query: 115 FPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFV 174
F + VLK C + ++G+Q+H + KLG+ +S+ L++FY K +E A
Sbjct: 290 F---VFSIVLKVCCGLEDWDMGRQIHSHIVKLGAESEVSVGTPLVDFYVKCGDIESAYRS 346
Query: 175 FSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDD 234
F ++ N V W+A I + G F + E + NS+ ++SV +AC +
Sbjct: 347 FGRISEPNDVSWSALISGFSQSGRLEDCIKIFTSLRSEGVVLNSFIYTSVFQACAA-QAN 405
Query: 235 GNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLV 294
N G Q H + +K GL S Y + +V MY KC L A R FE I D+ + +W A++
Sbjct: 406 LNMGSQAHGDAIKRGLVSYLYGESAMVTMYSKCGRLDYARRAFESI-DEPDAVAWTAIIS 464
Query: 295 GYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
GY +G EA F M++ G++ + ACS
Sbjct: 465 GYAYHGNAAEALGFFRRMQSYGVRPNAVTFIAVLTACS 502
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/270 (23%), Positives = 123/270 (45%), Gaps = 11/270 (4%)
Query: 12 MYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDE 71
+++ ++K C +D ++ +HI K + + + L+ +V CG +++A + F
Sbjct: 291 VFSIVLKVCCGLEDWDMGRQIHSHIVK-LGAESEVSVGTPLVDFYVKCGDIESAYRSFGR 349
Query: 72 MPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTM 131
+ + SW+ +I G+ ++CI +F + R +G +V ++I V +AC
Sbjct: 350 ISEPNDVSWSALISGFSQSGRLEDCIKIFTSL--RSEG---VVLNSFIYTSVFQACAAQA 404
Query: 132 NMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIV 191
N+ +G Q HG K G + +++ Y K L+ A F + + V WTA I
Sbjct: 405 NLNMGSQAHGDAIKRGLVSYLYGESAMVTMYSKCGRLDYARRAFESIDEPDAVAWTAIIS 464
Query: 192 NNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLE 251
G+ + F+ M ++ N+ TF +VL AC + + + G++
Sbjct: 465 GYAYHGNAAEALGFFRRMQSYGVRPNAVTFIAVLTACSHSGLVAEAKQYLGSMSRDYGVK 524
Query: 252 SD-EYVQCGLVDMYGKCRLLRDAERVFELI 280
++ C ++D Y + LL++A ELI
Sbjct: 525 PTIDHYDC-MIDTYSRAGLLQEA---LELI 550
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 89/194 (45%), Gaps = 20/194 (10%)
Query: 148 SSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKI----------VNNCREG 197
S+RN + T S NF + +V LKR ++ + T KI V+ ++G
Sbjct: 15 STRNQTSTSSSANF------AQIPSWV--SLKRSSSTIKTEKIQQGKLENLHLVSLSKQG 66
Query: 198 HFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQ 257
+ + KEM + +++ + +ACG + + GR +H + + ++
Sbjct: 67 KLKEAHDFLKEMDDADVSVTPHSYQCLFEACGKLRSLAD-GRLIHDRLRRTVKNPSGSIE 125
Query: 258 CGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGI 317
L+ MY C D ++VF+ ++ KN+ SW ++ Y +NG +A + M+ASGI
Sbjct: 126 NCLLRMYCDCGSCIDVQKVFDEML-MKNLVSWVIVISAYAKNGELEKAIRLFSDMQASGI 184
Query: 318 QIQESLINDLRIAC 331
+ ++ L +C
Sbjct: 185 RPNSAVYMSLLQSC 198
>gi|224141479|ref|XP_002324099.1| predicted protein [Populus trichocarpa]
gi|222867101|gb|EEF04232.1| predicted protein [Populus trichocarpa]
Length = 676
Score = 150 bits (380), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 94/337 (27%), Positives = 160/337 (47%), Gaps = 30/337 (8%)
Query: 9 TTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQL 68
+ +Y+ LI+ C + ++ HI K P L LNRLL M+ C L +++L
Sbjct: 69 SASVYSTLIQSCIKSRLLQQGKKVHQHI-KLSGFVPGLFILNRLLEMYAKCDSLMDSQKL 127
Query: 69 FDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI--------- 119
FDEMP RD SW ++I GY + QE +LF +M +R + ++
Sbjct: 128 FDEMPERDLCSWNILISGYAKMGLLQEAKSLFDKMPERDNFSWTAMISGYVRHDRPNEAL 187
Query: 120 ------------------IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINF 161
+ L A + +GK++HG + + G + + +L +
Sbjct: 188 ELFRMMKRSDNSKSNKFTVSSALAAAAAVPCLRIGKEIHGYIMRTGLDSDEVVWSALSDM 247
Query: 162 YGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTF 221
YGK +E+A +F ++ + V WTA I ++G + F+ F ++ R I+ N +TF
Sbjct: 248 YGKCGSIEEARHIFDKMVDRDIVTWTAMIDRYFQDGRRKEGFDLFADLLRSGIRPNEFTF 307
Query: 222 SSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIV 281
S VL AC + G+++H + ++G + + LV MY KC + AERVF+
Sbjct: 308 SGVLNACANQTSE-ELGKKVHGYMTRVGFDPFSFAASALVHMYSKCGNMVSAERVFKE-T 365
Query: 282 DKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
+ ++ SW +++ GY +NG EA ++ L+ SG Q
Sbjct: 366 PQPDLFSWTSLIAGYAQNGQPDEAIRYFELLVKSGTQ 402
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 101/201 (50%), Gaps = 9/201 (4%)
Query: 143 LFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQV 202
LF R++ LI+ Y K L++A +F ++ + WTA I R ++
Sbjct: 127 LFDEMPERDLCSWNILISGYAKMGLLQEAKSLFDKMPERDNFSWTAMISGYVRHDRPNEA 186
Query: 203 FNDFKEMGR-ERIKKNSYTFSSVLKACGGVDDDGNC---GRQMHANIVKIGLESDEYVQC 258
F+ M R + K N +T SS L A V C G+++H I++ GL+SDE V
Sbjct: 187 LELFRMMKRSDNSKSNKFTVSSALAAAAAVP----CLRIGKEIHGYIMRTGLDSDEVVWS 242
Query: 259 GLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
L DMYGKC + +A +F+ +VD ++I +W AM+ Y ++G E + SGI+
Sbjct: 243 ALSDMYGKCGSIEEARHIFDKMVD-RDIVTWTAMIDRYFQDGRRKEGFDLFADLLRSGIR 301
Query: 319 IQESLINDLRIACSSISASKI 339
E + + AC++ ++ ++
Sbjct: 302 PNEFTFSGVLNACANQTSEEL 322
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 67/159 (42%), Gaps = 8/159 (5%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
RV P + L+ M+ CG + +A ++F E P D SW +I GY E I
Sbjct: 332 RVGFDPFSFAASALVHMYSKCGNMVSAERVFKETPQPDLFSWTSLIAGYAQNGQPDEAIR 391
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELG-KQVHGLLFKLGSSRNISLTGS 157
F ++K + F V VL AC ++ G H + + G +
Sbjct: 392 YFELLVKSGTQPDHITF-----VGVLSACAHAGLVDKGLDYFHSIKEQYGLTHTADHYAC 446
Query: 158 LINFYGKFRCLEDADFVFSQLK-RHNTVVWTAKIVNNCR 195
+I+ + ++A+ + S++ + + +W A ++ CR
Sbjct: 447 IIDLLARSGQFDEAENIISKMSMKPDKFLW-ASLLGGCR 484
>gi|168066429|ref|XP_001785140.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663262|gb|EDQ50036.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 922
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 95/308 (30%), Positives = 153/308 (49%), Gaps = 9/308 (2%)
Query: 11 DMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFD 70
+ Y ++EC K A ++ +H+R +P + N L+ M+ CG ++ A +F
Sbjct: 52 NFYARRLQECVQAKSLAEGKKVHDHMRS-AQFEPDIYLNNMLISMYSKCGSIEDANNVFQ 110
Query: 71 EMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCT 130
M +D SW MI GY QE + LF +M + F + +L AC
Sbjct: 111 SMEDKDVVSWNAMISGYALHGRGQEAVDLFYQMQREGLKPNQNSF-----ISILSACQTP 165
Query: 131 MNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKI 190
+ +E G+Q+H + K G +++++ +LIN Y K LE A VF++++ N V WTA I
Sbjct: 166 IVLEFGEQIHSHITKAGYESDVNVSTALINMYCKCGSLELARKVFNEMRERNVVSWTAMI 225
Query: 191 VNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGL 250
+ G + F F+++ R + N +F+S+L AC +D G ++HA I + GL
Sbjct: 226 SGYVQHGDSKEAFVLFQKLIRSGTQPNKVSFASILGACTNPNDLEQ-GLKLHAYIKQAGL 284
Query: 251 ESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLY 310
E + V L+ MY +C L +A +VF+ + N SWNAM+ GY G EA +
Sbjct: 285 EQEVLVGNALISMYARCGSLANARQVFDNL-RSPNRVSWNAMIAGY-GEGFMEEAFRLFR 342
Query: 311 LMKASGIQ 318
M+ G Q
Sbjct: 343 DMQQKGFQ 350
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 93/317 (29%), Positives = 159/317 (50%), Gaps = 10/317 (3%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
+ ++ CT D +L +I K+ ++ +L N L+ M+ CG L ARQ+FD +
Sbjct: 256 FASILGACTNPNDLEQGLKLHAYI-KQAGLEQEVLVGNALISMYARCGSLANARQVFDNL 314
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN 132
+ SW MI GY + +E LF +M ++ + + + +C +A +
Sbjct: 315 RSPNRVSWNAMIAGYGE-GFMEEAFRLFRDMQQKGFQPDRFTYASLLAICADRA-----D 368
Query: 133 MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192
+ GK++H + + ++++ +LI+ Y K LE+A VF+Q+ N V W A I
Sbjct: 369 LNRGKELHSQIVRTAWEADVTVATALISMYAKCGSLEEARKVFNQMPEKNAVSWNAFIAC 428
Query: 193 NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLES 252
CR G + F FK+M R+ + + TF ++L +C +D GR +H I + G+ S
Sbjct: 429 CCRHGSEKEAFQVFKQMRRDDVIPDHVTFITLLNSCTS-PEDFERGRYIHGKIDQWGMLS 487
Query: 253 DEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLM 312
+ V L+ MYG+C L DA VF I ++++ SWNAM+ Y+++G A
Sbjct: 488 NNLVANALISMYGRCGKLADAREVFYRI-RRRDLGSWNAMIAAYVQHGANGSAFDLFIKY 546
Query: 313 KASGIQIQE-SLINDLR 328
K+ G + + + IN LR
Sbjct: 547 KSEGGKGDKYTFINVLR 563
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 93/325 (28%), Positives = 154/325 (47%), Gaps = 10/325 (3%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
Y L+ C + D EL + I R + + L+ M+ CG L+ AR++F++M
Sbjct: 356 YASLLAICADRADLNRGKELHSQI-VRTAWEADVTVATALISMYAKCGSLEEARKVFNQM 414
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI-IVCVLKACVCTM 131
P ++ SW I +E +F +M + V P + + +L +C
Sbjct: 415 PEKNAVSWNAFIACCCRHGSEKEAFQVFKQMRRDD------VIPDHVTFITLLNSCTSPE 468
Query: 132 NMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIV 191
+ E G+ +HG + + G N + +LI+ YG+ L DA VF +++R + W A I
Sbjct: 469 DFERGRYIHGKIDQWGMLSNNLVANALISMYGRCGKLADAREVFYRIRRRDLGSWNAMIA 528
Query: 192 NNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLE 251
+ G F+ F + E K + YTF +VL+A ++D + GR++H + K GLE
Sbjct: 529 AYVQHGANGSAFDLFIKYKSEGGKGDKYTFINVLRAIANLEDL-DAGRKIHGLVEKAGLE 587
Query: 252 SDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYL 311
D + L+ MY KC LRDA VF+ V +K++ WNAML Y + +A K
Sbjct: 588 KDIRILTTLIKMYSKCGSLRDAYSVFK-NVQEKDVVCWNAMLAAYNHSDHGQDALKLFQQ 646
Query: 312 MKASGIQIQESLINDLRIACSSISA 336
M+ G+ + + AC+ + A
Sbjct: 647 MRLEGVNPDSATYTSVLNACARLGA 671
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 89/323 (27%), Positives = 149/323 (46%), Gaps = 23/323 (7%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTL---LFLNRLLLMHVSCGQLDTARQLF 69
+ L+ CT +D FE +I +++ L L N L+ M+ CG+L AR++F
Sbjct: 457 FITLLNSCTSPED----FERGRYIHGKIDQWGMLSNNLVANALISMYGRCGKLADAREVF 512
Query: 70 DEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVC 129
+ RD SW MI YV LF + K + G + + VL+A
Sbjct: 513 YRIRRRDLGSWNAMIAAYVQHGANGSAFDLFIKY-KSEGGKG----DKYTFINVLRAIAN 567
Query: 130 TMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAK 189
+++ G+++HGL+ K G ++I + +LI Y K L DA VF ++ + V W A
Sbjct: 568 LEDLDAGRKIHGLVEKAGLEKDIRILTTLIKMYSKCGSLRDAYSVFKNVQEKDVVCWNAM 627
Query: 190 IVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC---GGVDDDGNCGRQMHANIV 246
+ H F++M E + +S T++SVL AC G ++ G++ H +
Sbjct: 628 LAAYNHSDHGQDALKLFQQMRLEGVNPDSATYTSVLNACARLGAIEH----GKKFHTQLK 683
Query: 247 KIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG---YIRNGLYV 303
+ +E+D +V G+ LL++AE E I + + W ++LV + GL
Sbjct: 684 EAAMETDTRHYACMVAALGRASLLKEAEEFIEEISSESDALMWESLLVACRIHHNVGLAE 743
Query: 304 EATKFLYLMKA-SGIQIQESLIN 325
A + L +KA S + E L+N
Sbjct: 744 TAVEHLLDVKAQSSPAVCEQLMN 766
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 105/210 (50%), Gaps = 2/210 (0%)
Query: 124 LKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNT 183
L+ CV ++ GK+VH + +I L LI+ Y K +EDA+ VF ++ +
Sbjct: 58 LQECVQAKSLAEGKKVHDHMRSAQFEPDIYLNNMLISMYSKCGSIEDANNVFQSMEDKDV 117
Query: 184 VVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHA 243
V W A I G + + F +M RE +K N +F S+L AC G Q+H+
Sbjct: 118 VSWNAMISGYALHGRGQEAVDLFYQMQREGLKPNQNSFISILSACQ-TPIVLEFGEQIHS 176
Query: 244 NIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYV 303
+I K G ESD V L++MY KC L A +VF + ++ N+ SW AM+ GY+++G
Sbjct: 177 HITKAGYESDVNVSTALINMYCKCGSLELARKVFNEMRER-NVVSWTAMISGYVQHGDSK 235
Query: 304 EATKFLYLMKASGIQIQESLINDLRIACSS 333
EA + SG Q + + AC++
Sbjct: 236 EAFVLFQKLIRSGTQPNKVSFASILGACTN 265
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 72/147 (48%), Gaps = 4/147 (2%)
Query: 187 TAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIV 246
+AK+ N +G + + +G+ ++ N ++ L+ C G+++H ++
Sbjct: 22 SAKVGRNTWKGK--SIRGGVQLLGKRGVQANLNFYARRLQECVQAKSLAE-GKKVHDHMR 78
Query: 247 KIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEAT 306
E D Y+ L+ MY KC + DA VF+ + DK ++ SWNAM+ GY +G EA
Sbjct: 79 SAQFEPDIYLNNMLISMYSKCGSIEDANNVFQSMEDK-DVVSWNAMISGYALHGRGQEAV 137
Query: 307 KFLYLMKASGIQIQESLINDLRIACSS 333
Y M+ G++ ++ + AC +
Sbjct: 138 DLFYQMQREGLKPNQNSFISILSACQT 164
>gi|302784186|ref|XP_002973865.1| hypothetical protein SELMODRAFT_100621 [Selaginella moellendorffii]
gi|300158197|gb|EFJ24820.1| hypothetical protein SELMODRAFT_100621 [Selaginella moellendorffii]
Length = 616
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 95/306 (31%), Positives = 148/306 (48%), Gaps = 14/306 (4%)
Query: 31 ELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDV 90
E+ H+ KR+ +KP + + L+ M CG L +R++FD+ +D W MIV Y
Sbjct: 188 EIHAHM-KRIWLKPDVFVDSALVTMFAKCGSLKESREVFDDCRWKDVLFWNSMIVAYSQS 246
Query: 91 ADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSS 149
+E I LF M V P A VL AC ++E GK+VH + G
Sbjct: 247 GHPREAIELFKSMGSSSP----PVEPNAITYTTVLAACSAVEDLEQGKEVHRQMVDAGFQ 302
Query: 150 RNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEM 209
+ + SL+N Y K + +A VF +K+ V WT I R+GH + + +++M
Sbjct: 303 FDAAAENSLVNMYAKCGSITEAREVFDGMKQRTVVSWTGIISAYVRKGHPREALDLYRKM 362
Query: 210 GRERIKKNSYTFSSVLKAC---GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGK 266
G E ++ N TF+SVL AC G +++ G+ +HA + G + D V LV +YGK
Sbjct: 363 GSEGVEPNGITFASVLSACSSLGALEE----GKAVHAQMKAAGYKPDLAVANALVSLYGK 418
Query: 267 CRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLIND 326
C + A +VF+ + +N+ SW AM+ Y + EA + M G+Q +
Sbjct: 419 CGSVDSARKVFDRM-KIRNVVSWTAMISAYAHHRHSEEAIQLYKAMDLEGVQASSFIYGT 477
Query: 327 LRIACS 332
+ ACS
Sbjct: 478 VLTACS 483
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 84/291 (28%), Positives = 145/291 (49%), Gaps = 14/291 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ CG L+ A+++FD M RD SW+ MI GYV +E I L+ M G
Sbjct: 106 NHLVQMYSKCGSLEDAKKVFDGMRRRDSISWSKMIAGYVRHGLAREAIKLYKAMAIDPDG 165
Query: 110 HMLLVFPAWIIVCVLKAC--VCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
F A VL AC + +E+GK++H + ++ ++ + +L+ + K
Sbjct: 166 ---FTFSA-----VLNACSSLGPRALEVGKEIHAHMKRIWLKPDVFVDSALVTMFAKCGS 217
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRER--IKKNSYTFSSVL 225
L+++ VF + + + W + IV + GH + FK MG ++ N+ T+++VL
Sbjct: 218 LKESREVFDDCRWKDVLFWNSMIVAYSQSGHPREAIELFKSMGSSSPPVEPNAITYTTVL 277
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
AC V+D G+++H +V G + D + LV+MY KC + +A VF+ + ++
Sbjct: 278 AACSAVEDLEQ-GKEVHRQMVDAGFQFDAAAENSLVNMYAKCGSITEAREVFDGM-KQRT 335
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+ SW ++ Y+R G EA M + G++ + ACSS+ A
Sbjct: 336 VVSWTGIISAYVRKGHPREALDLYRKMGSEGVEPNGITFASVLSACSSLGA 386
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 106/206 (51%), Gaps = 7/206 (3%)
Query: 132 NMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIV 191
+ GK++H + K G N+ + L+ Y K LEDA VF ++R +++ W+ I
Sbjct: 82 ELAAGKKIHEHVVKNGYYENVYVGNHLVQMYSKCGSLEDAKKVFDGMRRRDSISWSKMIA 141
Query: 192 NNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDG-NCGRQMHANIVKIGL 250
R G + +K M I + +TFS+VL AC + G+++HA++ +I L
Sbjct: 142 GYVRHGLAREAIKLYKAMA---IDPDGFTFSAVLNACSSLGPRALEVGKEIHAHMKRIWL 198
Query: 251 ESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLY 310
+ D +V LV M+ KC L+++ VF+ K++ WN+M+V Y ++G EA +
Sbjct: 199 KPDVFVDSALVTMFAKCGSLKESREVFD-DCRWKDVLFWNSMIVAYSQSGHPREAIELFK 257
Query: 311 LMKASGIQIQESLINDLRI--ACSSI 334
M +S ++ + I + ACS++
Sbjct: 258 SMGSSSPPVEPNAITYTTVLAACSAV 283
>gi|356528338|ref|XP_003532761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Glycine max]
Length = 785
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 93/287 (32%), Positives = 155/287 (54%), Gaps = 8/287 (2%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
++F N LL M+ CG L+ A ++F +M SW +I +V + E I LF EM
Sbjct: 294 VMFNNTLLDMYSKCGNLNGANEVFVKMGETTIVSWTSIIAAHVREGLHYEAIGLFDEM-- 351
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
+ KG L + + V+ AC C+ +++ G++VH + K N+ ++ +L+N Y K
Sbjct: 352 QSKG---LRPDIYAVTSVVHACACSNSLDKGREVHNHIKKNNMGSNLPVSNALMNMYAKC 408
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
+E+A+ +FSQL N V W I + ++ F +M ++++K + T + VL
Sbjct: 409 GSMEEANLIFSQLPVKNIVSWNTMIGGYSQNSLPNEALQLFLDM-QKQLKPDDVTMACVL 467
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
AC G+ GR++H +I++ G SD +V C LVDMY KC LL A+++F++I KK+
Sbjct: 468 PACAGLAALEK-GREIHGHILRKGYFSDLHVACALVDMYVKCGLLVLAQQLFDMI-PKKD 525
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+ W M+ GY +G EA M+ +GI+ +ES + AC+
Sbjct: 526 MILWTVMIAGYGMHGFGKEAISTFEKMRVAGIEPEESSFTSILYACT 572
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 85/283 (30%), Positives = 144/283 (50%), Gaps = 13/283 (4%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
+N L+ + CG++++AR LFDE+ RD SW MI G + + F +M+
Sbjct: 196 VNSLIAAYFKCGEVESARILFDELSDRDVVSWNSMISGCTMNGFSRNGLEFFIQML---- 251
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
++ + + +V VL AC N+ LG+ +H K G S + +L++ Y K L
Sbjct: 252 -NLGVDVDSATLVNVLVACANVGNLTLGRALHAYGVKAGFSGGVMFNNTLLDMYSKCGNL 310
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
A+ VF ++ V WT+ I + REG ++ F EM + ++ + Y +SV+ AC
Sbjct: 311 NGANEVFVKMGETTIVSWTSIIAAHVREGLHYEAIGLFDEMQSKGLRPDIYAVTSVVHAC 370
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
+ + GR++H +I K + S+ V L++MY KC + +A +F + KNI S
Sbjct: 371 -ACSNSLDKGREVHNHIKKNNMGSNLPVSNALMNMYAKCGSMEEANLIFSQL-PVKNIVS 428
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
WN M+ GY +N L EA + M+ Q++ +D+ +AC
Sbjct: 429 WNTMIGGYSQNSLPNEALQLFLDMQK---QLKP---DDVTMAC 465
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 80/284 (28%), Positives = 133/284 (46%), Gaps = 11/284 (3%)
Query: 51 RLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGH 110
+L+ M+V+CG L R++FD + W +++ Y + +Y+E + LF +M +
Sbjct: 97 KLVFMYVNCGDLVKGRRIFDGILNDKIFLWNLLMSEYAKIGNYRESVGLFEKMQE----- 151
Query: 111 MLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
+ + ++ CVLK + + K+VHG + KLG ++ SLI Y K +E
Sbjct: 152 LGIRGDSYTFTCVLKGFAASAKVRECKRVHGYVLKLGFGSYNAVVNSLIAAYFKCGEVES 211
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
A +F +L + V W + I G F +M + +S T +VL AC
Sbjct: 212 ARILFDELSDRDVVSWNSMISGCTMNGFSRNGLEFFIQMLNLGVDVDSATLVNVLVACAN 271
Query: 231 VDDDGN--CGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
V GN GR +HA VK G L+DMY KC L A VF + + + I S
Sbjct: 272 V---GNLTLGRALHAYGVKAGFSGGVMFNNTLLDMYSKCGNLNGANEVF-VKMGETTIVS 327
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
W +++ ++R GL+ EA M++ G++ + + AC+
Sbjct: 328 WTSIIAAHVREGLHYEAIGLFDEMQSKGLRPDIYAVTSVVHACA 371
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 76/303 (25%), Positives = 139/303 (45%), Gaps = 35/303 (11%)
Query: 8 ITTDMY--TCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTA 65
+ D+Y T ++ C E+ NHI+K N+ L N L+ M+ CG ++ A
Sbjct: 356 LRPDIYAVTSVVHACACSNSLDKGREVHNHIKKN-NMGSNLPVSNALMNMYAKCGSMEEA 414
Query: 66 RQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLK 125
+F ++P+++ SW MI GY + E + LF +M K+ K + + CVL
Sbjct: 415 NLIFSQLPVKNIVSWNTMIGGYSQNSLPNEALQLFLDMQKQLKPDDV------TMACVLP 468
Query: 126 ACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVV 185
AC +E G+++HG + + G ++ + +L++ Y K L A +F + + + ++
Sbjct: 469 ACAGLAALEKGREIHGHILRKGYFSDLHVACALVDMYVKCGLLVLAQQLFDMIPKKDMIL 528
Query: 186 WTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANI 245
WT I G + + F++M I+ +F+S+L AC H+ +
Sbjct: 529 WTVMIAGYGMHGFGKEAISTFEKMRVAGIEPEESSFTSILYAC------------THSGL 576
Query: 246 VKIG------LESD-------EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAM 292
+K G ++S+ E+ C +VD+ + L A + E + K + A W A+
Sbjct: 577 LKEGWKLFDSMKSECNIEPKLEHYAC-MVDLLIRSGNLSRAYKFIETMPIKPDAAIWGAL 635
Query: 293 LVG 295
L G
Sbjct: 636 LSG 638
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 99/212 (46%), Gaps = 2/212 (0%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
VL+ C ++E GK+VH ++ G + + L L+ Y L +F +
Sbjct: 63 VLQLCAELKSLEDGKRVHSIISSNGMAIDEVLGAKLVFMYVNCGDLVKGRRIFDGILNDK 122
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
+W + + G++ + F++M I+ +SYTF+ VLK C R +H
Sbjct: 123 IFLWNLLMSEYAKIGNYRESVGLFEKMQELGIRGDSYTFTCVLKGFAASAKVRECKR-VH 181
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
++K+G S V L+ Y KC + A +F+ + D +++ SWN+M+ G NG
Sbjct: 182 GYVLKLGFGSYNAVVNSLIAAYFKCGEVESARILFDELSD-RDVVSWNSMISGCTMNGFS 240
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIACSSI 334
+F M G+ + + + ++ +AC+++
Sbjct: 241 RNGLEFFIQMLNLGVDVDSATLVNVLVACANV 272
>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Vitis vinifera]
Length = 933
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 93/279 (33%), Positives = 144/279 (51%), Gaps = 9/279 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L++M+ C + +++LFDE+P R+ SW + YV + E + LF EM+
Sbjct: 196 NTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQIDFCGEAVGLFYEMV----- 250
Query: 110 HMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+ + P + + ++ AC + GK +HG L KLG + +L++ Y K L
Sbjct: 251 -LSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDL 309
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
DA VF ++K+ + V W A I H Q +M R I N +T SS LKAC
Sbjct: 310 ADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSALKAC 369
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
G+ GRQ+H++++K+ +ESD +V GLVDMY KC LL DA F L+ +K IA
Sbjct: 370 AGMGLK-ELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIA- 427
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDL 327
WNA++ GY + +EA M GI ++ ++ +
Sbjct: 428 WNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTI 466
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 93/311 (29%), Positives = 149/311 (47%), Gaps = 12/311 (3%)
Query: 9 TTDMYTCLIKECTFQKDSAGAFELLNHIRKR-VNIKPTLLFLNRLLLMHVSCGQLDTARQ 67
T+ Y+ L+ +C K ++ HI K ++ P++ N L+ ++ C AR+
Sbjct: 55 TSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIR--NHLINLYSKCRNFGYARK 112
Query: 68 LFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVF-PAWIIVCVLKA 126
L DE D SW+ +I GY + F EM H+L V + VLKA
Sbjct: 113 LVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEM------HLLGVKCNEFTFSSVLKA 166
Query: 127 CVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVW 186
C ++ +GKQVHG++ G ++ + +L+ Y K D+ +F ++ N V W
Sbjct: 167 CSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSW 226
Query: 187 TAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIV 246
A + + F EM IK N ++ SS++ AC G+ D G+ +H ++
Sbjct: 227 NALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSR-GKIIHGYLI 285
Query: 247 KIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEAT 306
K+G + D + LVDMY K L DA VFE I + +I SWNA++ G + + + +A
Sbjct: 286 KLGYDWDPFSANALVDMYAKVGDLADAISVFEKI-KQPDIVSWNAVIAGCVLHEHHEQAL 344
Query: 307 KFLYLMKASGI 317
+ L MK SGI
Sbjct: 345 ELLGQMKRSGI 355
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 84/294 (28%), Positives = 143/294 (48%), Gaps = 7/294 (2%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
+++++ L L+ M+ C L+ AR F+ +P +D +W +I GY + E ++
Sbjct: 387 KMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALS 446
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
LF EM K G F + +LK+ + + +QVHGL K G +I + SL
Sbjct: 447 LFVEMHKEGIG-----FNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSL 501
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
I+ YGK +EDA+ +F + + V +T+ I + G + F EM +K +
Sbjct: 502 IDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDR 561
Query: 219 YTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE 278
+ SS+L AC + G+Q+H +I+K G D + LV+MY KC + DA R F
Sbjct: 562 FVCSSLLNACANLSAFEQ-GKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFS 620
Query: 279 LIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+ ++ I SW+AM+ G ++G +A + M G+ + + AC+
Sbjct: 621 ELTER-GIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACN 673
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 87/287 (30%), Positives = 141/287 (49%), Gaps = 7/287 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ G L A +F+++ D SW +I G V +++ + L +M ++ G
Sbjct: 297 NALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQM--KRSG 354
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+F + LKAC ELG+Q+H L K+ ++ ++ L++ Y K LE
Sbjct: 355 ICPNIF---TLSSALKACAGMGLKELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLE 411
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
DA F+ L + + W A I + + + F EM +E I N T S++LK+
Sbjct: 412 DARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTA 471
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
G+ C RQ+H VK G SD YV L+D YGKC + DAER+FE ++ S+
Sbjct: 472 GLQVVHVC-RQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECT-IGDLVSF 529
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+M+ Y + G EA K M+ ++ + + L AC+++SA
Sbjct: 530 TSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSA 576
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/215 (33%), Positives = 107/215 (49%), Gaps = 2/215 (0%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
+L C T ++ G Q+H + K G S + S+ LIN Y K R A + + +
Sbjct: 62 LLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRNFGYARKLVDESSEPD 121
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
V W+A I + G F EM +K N +TFSSVLKAC V D G+Q+H
Sbjct: 122 LVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDL-RIGKQVH 180
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
+V G E D +V LV MY KC D++R+F+ I ++N+ SWNA+ Y++
Sbjct: 181 GVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEI-PERNVVSWNALFSCYVQIDFC 239
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIACSSISAS 337
EA Y M SGI+ E ++ + AC+ + S
Sbjct: 240 GEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDS 274
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/258 (27%), Positives = 112/258 (43%), Gaps = 31/258 (12%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
+N L+ + C ++ A ++F+E + D S+ MI Y +E + LF EM
Sbjct: 498 VNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQD--- 554
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
M L ++ +L AC E GKQ+H + K G +I SL+N Y K +
Sbjct: 555 --MELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSI 612
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+DA FS+L V W+A I + GH Q F +M +E + N T SVL AC
Sbjct: 613 DDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGAC 672
Query: 229 GGVDDDGNCGRQMHANIV---KIGLES----------DEYVQCGLVDMYGKCRLLRDAER 275
HA +V K+ ES E+ C ++D+ G+ + +A
Sbjct: 673 N------------HAGLVTEAKLYFESMEELFGFKPMQEHYAC-MIDLLGRAGKINEAVE 719
Query: 276 VFELIVDKKNIASWNAML 293
+ + + N + W A+L
Sbjct: 720 LVNKMPFEANASVWGALL 737
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 62/125 (49%), Gaps = 2/125 (1%)
Query: 216 KNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAER 275
S ++S +L C G Q+HA+I K GL D ++ L+++Y KCR A +
Sbjct: 54 PTSVSYSKLLSQCC-TTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRNFGYARK 112
Query: 276 VFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
+ + + ++ SW+A++ GY +NGL A + M G++ E + + ACS +
Sbjct: 113 LVDE-SSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVK 171
Query: 336 ASKIN 340
+I
Sbjct: 172 DLRIG 176
>gi|449522919|ref|XP_004168473.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like, partial [Cucumis sativus]
Length = 670
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 89/286 (31%), Positives = 147/286 (51%), Gaps = 10/286 (3%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
L L+ M+ G +++AR +F+ MP R+ SW VMI GYV E + LF +++
Sbjct: 261 LTTLIDMYCKSGDVESARWIFENMPSRNLVSWNVMISGYVQNGLLVETLRLFQKLIMDDV 320
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
G F + +V +++ C T +++ GK +HG +++ G N+ L ++++ Y K L
Sbjct: 321 G-----FDSGTVVSLIQLCSRTADLDGGKILHGFIYRRGLDLNLVLPTAIVDLYAKCGSL 375
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
A VF ++K N + WTA +V + GH F +M ER+ N+ T S++ C
Sbjct: 376 AYASSVFERMKNKNVISWTAMLVGLAQNGHARDALKLFDQMQNERVTFNALTLVSLVYCC 435
Query: 229 G--GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
G+ + GR +HA + + S+ V L+DMY KC + AE VF+ + K++
Sbjct: 436 TLLGLLRE---GRSVHATLTRFHFASEVVVMTALIDMYAKCSKINSAEMVFKYGLTPKDV 492
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+N+M+ GY +GL +A + M G+Q ES L ACS
Sbjct: 493 ILYNSMISGYGMHGLGHKALCVYHRMNREGLQPNESTFVSLLSACS 538
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 73/259 (28%), Positives = 121/259 (46%), Gaps = 40/259 (15%)
Query: 51 RLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGH 110
+L+ + S G L+ AR++FDE+P M+ GY+ Y +CI L +MM R
Sbjct: 94 KLVAAYSSLGCLENARKVFDEIPQPKTVLCNAMVNGYLQNERYNDCIELL-KMMSRCH-- 150
Query: 111 MLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
L F ++ LKAC+ ++ E+G +V GL G + L S++NF
Sbjct: 151 --LEFDSYTCNFALKACMFLLDYEMGMEVIGLAVCKGLAGGRFLGSSILNFL-------- 200
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
EG F + +N F +M +I+ ++ T S++++CG
Sbjct: 201 -------------------------EGLFREGYNLFLDMLYNKIEPSAVTMISLIQSCGE 235
Query: 231 VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWN 290
+ + G+ MH ++ G+ D V L+DMY K + A +FE + +N+ SWN
Sbjct: 236 MRNL-TFGKCMHGFVLGFGMSRDTRVLTTLIDMYCKSGDVESARWIFE-NMPSRNLVSWN 293
Query: 291 AMLVGYIRNGLYVEATKFL 309
M+ GY++NGL VE +
Sbjct: 294 VMISGYVQNGLLVETLRLF 312
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 112/223 (50%), Gaps = 11/223 (4%)
Query: 93 YQECITLFAEMMKRKKGHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRN 151
++E LF +M+ K + P+ + ++ ++++C N+ GK +HG + G SR+
Sbjct: 204 FREGYNLFLDMLYNK------IEPSAVTMISLIQSCGEMRNLTFGKCMHGFVLGFGMSRD 257
Query: 152 ISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGR 211
+ +LI+ Y K +E A ++F + N V W I + G + F+++
Sbjct: 258 TRVLTTLIDMYCKSGDVESARWIFENMPSRNLVSWNVMISGYVQNGLLVETLRLFQKLIM 317
Query: 212 ERIKKNSYTFSSVLKACGGVDD-DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLL 270
+ + +S T S+++ C D DG G+ +H I + GL+ + + +VD+Y KC L
Sbjct: 318 DDVGFDSGTVVSLIQLCSRTADLDG--GKILHGFIYRRGLDLNLVLPTAIVDLYAKCGSL 375
Query: 271 RDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMK 313
A VFE + KN+ SW AMLVG +NG +A K M+
Sbjct: 376 AYASSVFERM-KNKNVISWTAMLVGLAQNGHARDALKLFDQMQ 417
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 66/267 (24%), Positives = 119/267 (44%), Gaps = 17/267 (6%)
Query: 16 LIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLR 75
LI+ C+ D G L I +R + L+ ++ ++ CG L A +F+ M +
Sbjct: 330 LIQLCSRTADLDGGKILHGFIYRR-GLDLNLVLPTAIVDLYAKCGSLAYASSVFERMKNK 388
Query: 76 DFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMEL 135
+ SW M+VG ++ + LF +M + + F A +V ++ C +
Sbjct: 389 NVISWTAMLVGLAQNGHARDALKLFDQMQNER-----VTFNALTLVSLVYCCTLLGLLRE 443
Query: 136 GKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQ-LKRHNTVVWTAKIVNNC 194
G+ VH L + + + + +LI+ Y K + A+ VF L + +++ + I
Sbjct: 444 GRSVHATLTRFHFASEVVVMTALIDMYAKCSKINSAEMVFKYGLTPKDVILYNSMISGYG 503
Query: 195 REGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC---GGVDDDGNCGRQMHANIVKI--G 249
G H+ + M RE ++ N TF S+L AC G V++ G + N+VK
Sbjct: 504 MHGLGHKALCVYHRMNREGLQPNESTFVSLLSACSHSGLVEE----GIALFQNMVKDHNT 559
Query: 250 LESDEYVQCGLVDMYGKCRLLRDAERV 276
+D+ C +VD+ + LR AE +
Sbjct: 560 TPTDKLYAC-IVDLLSRAGRLRQAEEL 585
Score = 38.1 bits (87), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%)
Query: 154 LTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRER 213
L L+ Y CLE+A VF ++ + TV+ A + + ++ K M R
Sbjct: 91 LVAKLVAAYSSLGCLENARKVFDEIPQPKTVLCNAMVNGYLQNERYNDCIELLKMMSRCH 150
Query: 214 IKKNSYTFSSVLKAC 228
++ +SYT + LKAC
Sbjct: 151 LEFDSYTCNFALKAC 165
>gi|297816638|ref|XP_002876202.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297322040|gb|EFH52461.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 769
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 99/315 (31%), Positives = 150/315 (47%), Gaps = 9/315 (2%)
Query: 3 NLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQL 62
N I Y LI C+ + A ++ +HI N K + N +L M+ CG L
Sbjct: 57 NSSFKIRLRTYISLICACSSSRSLAQGRKIHDHILNS-NCKYDTILNNHILSMYGKCGSL 115
Query: 63 DTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVC 122
AR++FD MP R+ S+ +I GY E ITL+ +M++ LV +
Sbjct: 116 RDAREVFDFMPERNLVSYTSVITGYSQNGQEAEAITLYLKMLQAD-----LVPDQFAFGS 170
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
++KAC C ++ LGKQ+H + KL SS ++ +LI Y +F + DA VF + +
Sbjct: 171 IIKACACAGDVVLGKQLHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASKVFYGIPAKD 230
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERI-KKNSYTFSSVLKACGGVDDDGNCGRQM 241
+ W++ I + G + + KEM + N Y F S LKAC + + G Q+
Sbjct: 231 LISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRP-DYGSQI 289
Query: 242 HANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGL 301
H +K+ L + C L DMY +C L A RVF I ++ + ASWN ++ G NG
Sbjct: 290 HGLCIKLELTGNAIAGCSLCDMYARCGFLDSARRVFNQI-ERPDTASWNVIIAGLANNGY 348
Query: 302 YVEATKFLYLMKASG 316
EA M+ SG
Sbjct: 349 ADEAVSVFSEMRNSG 363
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 79/281 (28%), Positives = 138/281 (49%), Gaps = 8/281 (2%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+ CG LD+AR++F+++ D SW V+I G + E +++F+EM R G +
Sbjct: 311 MYARCGFLDSARRVFNQIERPDTASWNVIIAGLANNGYADEAVSVFSEM--RNSG---FI 365
Query: 115 FPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFV 174
A + +L A M + G Q+H + K G ++S+ SL+ Y L +
Sbjct: 366 PDAISLRSLLCAQTKPMALCQGMQIHSFIIKCGFLADLSVCNSLLTMYTFCSDLYCCFNL 425
Query: 175 FSQLK-RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDD 233
F + + ++V W A + + ++ FK M + + T ++L+ C +
Sbjct: 426 FEDFRNKADSVSWNAILTACLQHEQPVEMLRLFKLMLVSECEPDHITMGNLLRGCVEISS 485
Query: 234 DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
G Q+H K GL +++++ GL+DMY KC LR A R+F+ + D ++ SW+ ++
Sbjct: 486 -LKLGSQVHCYSWKTGLVLEQFIKNGLIDMYAKCGSLRQARRIFDSM-DNGDVVSWSTLI 543
Query: 294 VGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
VGY ++G EA MK+SGI+ + ACS +
Sbjct: 544 VGYAQSGFGEEALILFREMKSSGIEPNHVTFVGVLTACSHV 584
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 88/328 (26%), Positives = 145/328 (44%), Gaps = 8/328 (2%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
+ +IK C D +L + K + L+ N L+ M+V Q+ A ++F +
Sbjct: 168 FGSIIKACACAGDVVLGKQLHAQVIK-LESSSHLIAQNALIAMYVRFNQMSDASKVFYGI 226
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN 132
P +D SW+ +I G+ + E ++ EM+ H +I LKAC +
Sbjct: 227 PAKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHP----NEYIFGSSLKACSSLLR 282
Query: 133 MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192
+ G Q+HGL KL + N SL + Y + L+ A VF+Q++R +T W I
Sbjct: 283 PDYGSQIHGLCIKLELTGNAIAGCSLCDMYARCGFLDSARRVFNQIERPDTASWNVIIAG 342
Query: 193 NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC-GRQMHANIVKIGLE 251
G+ + + F EM ++ + S+L C C G Q+H+ I+K G
Sbjct: 343 LANNGYADEAVSVFSEMRNSGFIPDAISLRSLL--CAQTKPMALCQGMQIHSFIIKCGFL 400
Query: 252 SDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYL 311
+D V L+ MY C L +FE +K + SWNA+L +++ VE + L
Sbjct: 401 ADLSVCNSLLTMYTFCSDLYCCFNLFEDFRNKADSVSWNAILTACLQHEQPVEMLRLFKL 460
Query: 312 MKASGIQIQESLINDLRIACSSISASKI 339
M S + + +L C IS+ K+
Sbjct: 461 MLVSECEPDHITMGNLLRGCVEISSLKL 488
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/259 (24%), Positives = 106/259 (40%), Gaps = 34/259 (13%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLR-DFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
N LL M+ C L LF++ + D SW ++ + E + LF M+ +
Sbjct: 407 NSLLTMYTFCSDLYCCFNLFEDFRNKADSVSWNAILTACLQHEQPVEMLRLFKLMLVSE- 465
Query: 109 GHMLLVFPAWIIVC-VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
P I + +L+ CV +++LG QVH +K G + LI+ Y K
Sbjct: 466 -----CEPDHITMGNLLRGCVEISSLKLGSQVHCYSWKTGLVLEQFIKNGLIDMYAKCGS 520
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
L A +F + + V W+ IV + G + F+EM I+ N TF VL A
Sbjct: 521 LRQARRIFDSMDNGDVVSWSTLIVGYAQSGFGEEALILFREMKSSGIEPNHVTFVGVLTA 580
Query: 228 CGGVDDDGNCGRQMHANIVKIGLE-------------SDEYVQCGLVDMYGKCRLLRDAE 274
C H +V+ GL+ + E+ C +VD+ + L +AE
Sbjct: 581 CS------------HVGLVEEGLKLYAIMQTEHGISPTKEHCSC-VVDLLARAGHLNEAE 627
Query: 275 RVFELIVDKKNIASWNAML 293
R + + + ++ W +L
Sbjct: 628 RFIDEMKLEPDVVVWKTLL 646
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 77/155 (49%), Gaps = 12/155 (7%)
Query: 176 SQLKRHNTVVWTAK---IVNN-----CREGHFHQVFNDFK-EMGRERIKKNSYTFSSVLK 226
SQ+ ++VV T K ++N+ CR + + F K T+ S++
Sbjct: 13 SQIPATSSVVSTIKTEELMNDHINSLCRNSFYREALEAFDFAQKNSSFKIRLRTYISLIC 72
Query: 227 ACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
AC GR++H +I+ + D + ++ MYGKC LRDA VF+ + ++N+
Sbjct: 73 ACSSSRSLAQ-GRKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFM-PERNL 130
Query: 287 ASWNAMLVGYIRNGLYVEA-TKFLYLMKASGIQIQ 320
S+ +++ GY +NG EA T +L +++A + Q
Sbjct: 131 VSYTSVITGYSQNGQEAEAITLYLKMLQADLVPDQ 165
>gi|357128207|ref|XP_003565766.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33680-like [Brachypodium distachyon]
Length = 734
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 93/287 (32%), Positives = 137/287 (47%), Gaps = 10/287 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL M+ G + A+ +FDEMP R+ SWA M+ GY QE LF +M+ G
Sbjct: 159 LLNMYCKLGLIPDAQLVFDEMPHRNEVSWAAMVAGYAARKCSQEAFELFRQML----GEC 214
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
L ++ VL A + + +G QVHGL+ K G +S+ SL+ Y K C++ A
Sbjct: 215 PLHKNEFVATAVLSAISVPLGLPMGVQVHGLVVKDGMVGFVSVENSLVTMYAKAGCMDAA 274
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
VF K N++ W+A I + G+ F +M +T VL AC
Sbjct: 275 FHVFESSKERNSITWSAMITGYSQNGNAESAVRMFSQMHAAGFPPTEFTLVGVLNAC--- 331
Query: 232 DDDGNC--GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
D G G+Q H +VK+G E YV+ LVDMY KC + DA+ F + +I W
Sbjct: 332 SDVGTLMEGKQAHGLMVKLGFEVQVYVKSALVDMYAKCGCIGDAKECFNQF-SELDIVLW 390
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
AM+ G+++NG + +A M G+ I L AC+ ++A
Sbjct: 391 TAMVTGHVQNGEFEQALMLYARMDKEGVFPNTLTITSLLRACAGLAA 437
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 83/285 (29%), Positives = 137/285 (48%), Gaps = 11/285 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ G +D A +F+ R+ +W+ MI GY + + + +F++M
Sbjct: 259 NSLVTMYAKAGCMDAAFHVFESSKERNSITWSAMITGYSQNGNAESAVRMFSQMHAAG-- 316
Query: 110 HMLLVFPA--WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
FP + +V VL AC + GKQ HGL+ KLG + + +L++ Y K C
Sbjct: 317 -----FPPTEFTLVGVLNACSDVGTLMEGKQAHGLMVKLGFEVQVYVKSALVDMYAKCGC 371
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
+ DA F+Q + V+WTA + + + G F Q + M +E + N+ T +S+L+A
Sbjct: 372 IGDAKECFNQFSELDIVLWTAMVTGHVQNGEFEQALMLYARMDKEGVFPNTLTITSLLRA 431
Query: 228 CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
C G+ G+Q+H I+K G V L MY KC L D VF + +++
Sbjct: 432 CAGLAAL-EPGKQLHTQILKFGFGLGASVGSALSTMYSKCGNLEDGMVVFRRM-PHRDVI 489
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+WN+++ G+ +NG +A MK G ++ ACS
Sbjct: 490 AWNSIISGFSQNGRGNDAINLFEEMKLEGTAPDPVTFINVLCACS 534
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 95/198 (47%), Gaps = 4/198 (2%)
Query: 139 VHGLLFKLGS-SRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREG 197
VH L KL S S N+ ++ +L+N Y K + DA VF ++ N V W A +
Sbjct: 139 VHALACKLPSASSNVFVSTALLNMYCKLGLIPDAQLVFDEMPHRNEVSWAAMVAGYAARK 198
Query: 198 HFHQVFNDFKEM-GRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYV 256
+ F F++M G + KN + ++VL A V G Q+H +VK G+ V
Sbjct: 199 CSQEAFELFRQMLGECPLHKNEFVATAVLSAI-SVPLGLPMGVQVHGLVVKDGMVGFVSV 257
Query: 257 QCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASG 316
+ LV MY K + A VFE ++ +I +W+AM+ GY +NG A + M A+G
Sbjct: 258 ENSLVTMYAKAGCMDAAFHVFESSKERNSI-TWSAMITGYSQNGNAESAVRMFSQMHAAG 316
Query: 317 IQIQESLINDLRIACSSI 334
E + + ACS +
Sbjct: 317 FPPTEFTLVGVLNACSDV 334
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 71/166 (42%), Gaps = 7/166 (4%)
Query: 136 GKQVHGLLFKLGSSRNISLTGSLINFYGKF-RCLEDADF-VFSQLK--RHNTVVWTAKIV 191
G+ +H K GSS + ++ SLI FY F R A F VF+ + + W + ++
Sbjct: 31 GEALHAWALKSGSSSHAPVSNSLITFYSSFPRLFLPAAFAVFADIPAAARDVASWNS-LL 89
Query: 192 NNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKI-GL 250
N + F+ M S + + G +HA K+
Sbjct: 90 NPLSHHRPLAALSHFRSMLSSSTILPSPHSFAAAFTAAARAHSASAGAVVHALACKLPSA 149
Query: 251 ESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGY 296
S+ +V L++MY K L+ DA+ VF+ + +N SW AM+ GY
Sbjct: 150 SSNVFVSTALLNMYCKLGLIPDAQLVFDEM-PHRNEVSWAAMVAGY 194
>gi|255546193|ref|XP_002514156.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223546612|gb|EEF48110.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 885
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 89/283 (31%), Positives = 141/283 (49%), Gaps = 7/283 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M++ G + ++FD M RD SW ++ G+ D + + +F +M+
Sbjct: 435 NALITMYMKSGFVQDGIRVFDTMTNRDLVSWNALLSGFYDFETSDQGLRIFCQMLMEG-- 492
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
LV + V VL++C +N+ GKQVH + K N + +LI+ Y K RCLE
Sbjct: 493 ---LVPNLYTFVGVLRSCSSLLNVWFGKQVHAHIIKNSLDGNDFVGTALIDMYAKNRCLE 549
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
DAD F++L + WT I + + + +M RE IK N +T +S L C
Sbjct: 550 DADVAFNKLTNRDLFTWTVIIAGHSQTDKAEKAVKYLGQMLREGIKPNEFTLASCLSGCS 609
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ GN G+Q+H+ +K G D +V LVDMYGKC + DAE +F+ + + +A W
Sbjct: 610 RMATLGN-GQQLHSLAIKSGHSGDVFVSSALVDMYGKCGCMEDAEAIFKGLFSRDTVA-W 667
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
N ++ GY ++G +A + +M I E + ACS
Sbjct: 668 NTIICGYSQHGQGQKALEAFRMMLDEDIDPDEVTFIGVLAACS 710
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 86/312 (27%), Positives = 152/312 (48%), Gaps = 14/312 (4%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
Y+ +++EC + + + ++ K ++P L+ ++ CG L AR++ M
Sbjct: 96 YSGMLRECASKGNLNEGTAIHGNVIKS-GLEPDSHLWVSLINLYAKCGSLAFARKVLVGM 154
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTM 131
RD SW +I GYV + + + EM K + P + + VLKA
Sbjct: 155 RERDVVSWTALIAGYVSEGCGSDGVKAYCEMRKEN------ICPNEFTLATVLKASSMCS 208
Query: 132 NMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIV 191
+++ GK +H K G ++ + +L++ Y KF +E AD VF + N V W A +
Sbjct: 209 DIKFGKLIHLEAIKTGLLLDLFVGSALVDLYAKFGEMELADRVFFGMPEKNNVSWNALLN 268
Query: 192 NNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC--GRQMHANIVKIG 249
+ G V F M + +YT S+VLK C + GN G+ +H+ ++
Sbjct: 269 GYAQRGDGKNVLKLFCRMLECEMNFTNYTLSTVLKGCA---NSGNLREGKALHSLSIRRA 325
Query: 250 LESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFL 309
E DE++ C LVDMY KC + +A +VF +I ++ +I +W+A++ G + G EA +
Sbjct: 326 YELDEFLGCNLVDMYSKCGMAYEALKVFNMI-EEPDIVAWSAIITGLDQQGHSQEAAELF 384
Query: 310 YLMKASGIQIQE 321
+LM+ G++ +
Sbjct: 385 HLMRQKGVRPNQ 396
Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 71/251 (28%), Positives = 130/251 (51%), Gaps = 8/251 (3%)
Query: 47 LFLNRLLL-MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
LF+ L+ ++ G+++ A ++F MP ++ SW ++ GY D + + LF M++
Sbjct: 229 LFVGSALVDLYAKFGEMELADRVFFGMPEKNNVSWNALLNGYAQRGDGKNVLKLFCRMLE 288
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
+ + F + + VLK C + N+ GK +H L + + L +L++ Y K
Sbjct: 289 CE-----MNFTNYTLSTVLKGCANSGNLREGKALHSLSIRRAYELDEFLGCNLVDMYSKC 343
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
+A VF+ ++ + V W+A I ++GH + F M ++ ++ N ++F+SV+
Sbjct: 344 GMAYEALKVFNMIEEPDIVAWSAIITGLDQQGHSQEAAELFHLMRQKGVRPNQFSFASVI 403
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
A V D G+ +H I K G ESD V L+ MY K ++D RVF+ + + ++
Sbjct: 404 SAATNVGDL-YLGQSIHCCICKYGYESDNSVGNALITMYMKSGFVQDGIRVFDTMTN-RD 461
Query: 286 IASWNAMLVGY 296
+ SWNA+L G+
Sbjct: 462 LVSWNALLSGF 472
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 135/285 (47%), Gaps = 9/285 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ CG A ++F+ + D +W+ +I G QE LF M R+KG
Sbjct: 336 LVDMYSKCGMAYEALKVFNMIEEPDIVAWSAIITGLDQQGHSQEAAELFHLM--RQKG-- 391
Query: 112 LLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
V P + V+ A ++ LG+ +H + K G + S+ +LI Y K ++D
Sbjct: 392 --VRPNQFSFASVISAATNVGDLYLGQSIHCCICKYGYESDNSVGNALITMYMKSGFVQD 449
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
VF + + V W A + Q F +M E + N YTF VL++C
Sbjct: 450 GIRVFDTMTNRDLVSWNALLSGFYDFETSDQGLRIFCQMLMEGLVPNLYTFVGVLRSCSS 509
Query: 231 VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWN 290
+ + G+Q+HA+I+K L+ +++V L+DMY K R L DA+ F + ++ ++ +W
Sbjct: 510 LLNVW-FGKQVHAHIIKNSLDGNDFVGTALIDMYAKNRCLEDADVAFNKLTNR-DLFTWT 567
Query: 291 AMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
++ G+ + +A K+L M GI+ E + CS ++
Sbjct: 568 VIIAGHSQTDKAEKAVKYLGQMLREGIKPNEFTLASCLSGCSRMA 612
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 75/241 (31%), Positives = 116/241 (48%), Gaps = 24/241 (9%)
Query: 63 DTARQLFDEMPLRDFNS--WAVMIVGYVDVADYQECITLFA-EMMKRKKGHMLLVFPAWI 119
DT +++ +P R +S W++ +D ++ E I+ + E++KR G
Sbjct: 55 DTTQEVNKRIP-RKLSSPNWSL-----IDKSETNEIISFASKEVLKRYSG---------- 98
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
+L+ C N+ G +HG + K G + L SLIN Y K L A V ++
Sbjct: 99 ---MLRECASKGNLNEGTAIHGNVIKSGLEPDSHLWVSLINLYAKCGSLAFARKVLVGMR 155
Query: 180 RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGR 239
+ V WTA I EG + EM +E I N +T ++VLKA + D G+
Sbjct: 156 ERDVVSWTALIAGYVSEGCGSDGVKAYCEMRKENICPNEFTLATVLKA-SSMCSDIKFGK 214
Query: 240 QMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRN 299
+H +K GL D +V LVD+Y K + A+RVF + +K N+ SWNA+L GY +
Sbjct: 215 LIHLEAIKTGLLLDLFVGSALVDLYAKFGEMELADRVFFGMPEKNNV-SWNALLNGYAQR 273
Query: 300 G 300
G
Sbjct: 274 G 274
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 63/122 (51%), Gaps = 5/122 (4%)
Query: 221 FSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELI 280
+S +L+ C + N G +H N++K GLE D ++ L+++Y KC L A +V +
Sbjct: 96 YSGMLRECAS-KGNLNEGTAIHGNVIKSGLEPDSHLWVSLINLYAKCGSLAFARKVL-VG 153
Query: 281 VDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQE-SLINDLRIA--CSSISAS 337
+ ++++ SW A++ GY+ G + K M+ I E +L L+ + CS I
Sbjct: 154 MRERDVVSWTALIAGYVSEGCGSDGVKAYCEMRKENICPNEFTLATVLKASSMCSDIKFG 213
Query: 338 KI 339
K+
Sbjct: 214 KL 215
>gi|449436034|ref|XP_004135799.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
Length = 706
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 89/286 (31%), Positives = 147/286 (51%), Gaps = 10/286 (3%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
L L+ M+ G +++AR +F+ MP R+ SW VMI GYV E + LF +++
Sbjct: 294 LTTLIDMYCKSGDVESARWIFENMPSRNLVSWNVMISGYVQNGLLVETLRLFQKLIMDDV 353
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
G F + +V +++ C T +++ GK +HG +++ G N+ L ++++ Y K L
Sbjct: 354 G-----FDSGTVVSLIQLCSRTADLDGGKILHGFIYRRGLDLNLVLPTAIVDLYAKCGSL 408
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
A VF ++K N + WTA +V + GH F +M ER+ N+ T S++ C
Sbjct: 409 AYASSVFERMKNKNVISWTAMLVGLAQNGHARDALKLFDQMQNERVTFNALTLVSLVYCC 468
Query: 229 G--GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
G+ + GR +HA + + S+ V L+DMY KC + AE VF+ + K++
Sbjct: 469 TLLGLLRE---GRSVHATLTRFHFASEVVVMTALIDMYAKCSKINSAEMVFKYGLTPKDV 525
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+N+M+ GY +GL +A + M G+Q ES L ACS
Sbjct: 526 ILYNSMISGYGMHGLGHKALCVYHRMNREGLQPNESTFVSLLSACS 571
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/259 (31%), Positives = 133/259 (51%), Gaps = 7/259 (2%)
Query: 51 RLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGH 110
+L+ + S G L+ AR++FDE+P M+ GY+ Y +CI L +MM R
Sbjct: 94 KLVAAYSSLGCLENARKVFDEIPQPKTVLCNAMVNGYLQNERYNDCIELL-KMMSRCH-- 150
Query: 111 MLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
L F ++ LKAC+ ++ E+G +V GL G + L S++NF K +
Sbjct: 151 --LEFDSYTCNFALKACMFLLDYEMGMEVIGLAVCKGLAGGRFLGSSILNFLVKTGDIMC 208
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
A F F Q+ + V W I +EG F + +N F +M +I+ ++ T S++++CG
Sbjct: 209 AQFFFHQMVEKDVVCWNVMIGGFMQEGLFREGYNLFLDMLYNKIEPSAVTMISLIQSCGE 268
Query: 231 VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWN 290
+ + G+ MH ++ G+ D V L+DMY K + A +FE + +N+ SWN
Sbjct: 269 MRNL-TFGKCMHGFVLGFGMSRDTRVLTTLIDMYCKSGDVESARWIFENM-PSRNLVSWN 326
Query: 291 AMLVGYIRNGLYVEATKFL 309
M+ GY++NGL VE +
Sbjct: 327 VMISGYVQNGLLVETLRLF 345
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 85/307 (27%), Positives = 146/307 (47%), Gaps = 14/307 (4%)
Query: 11 DMYTC--LIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQL 68
D YTC +K C F D E++ + + + +L V G + A+
Sbjct: 154 DSYTCNFALKACMFLLDYEMGMEVIGLAVCK-GLAGGRFLGSSILNFLVKTGDIMCAQFF 212
Query: 69 FDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI-IVCVLKAC 127
F +M +D W VMI G++ ++E LF +M+ K + P+ + ++ ++++C
Sbjct: 213 FHQMVEKDVVCWNVMIGGFMQEGLFREGYNLFLDMLYNK------IEPSAVTMISLIQSC 266
Query: 128 VCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWT 187
N+ GK +HG + G SR+ + +LI+ Y K +E A ++F + N V W
Sbjct: 267 GEMRNLTFGKCMHGFVLGFGMSRDTRVLTTLIDMYCKSGDVESARWIFENMPSRNLVSWN 326
Query: 188 AKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDD-DGNCGRQMHANIV 246
I + G + F+++ + + +S T S+++ C D DG G+ +H I
Sbjct: 327 VMISGYVQNGLLVETLRLFQKLIMDDVGFDSGTVVSLIQLCSRTADLDG--GKILHGFIY 384
Query: 247 KIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEAT 306
+ GL+ + + +VD+Y KC L A VFE + KN+ SW AMLVG +NG +A
Sbjct: 385 RRGLDLNLVLPTAIVDLYAKCGSLAYASSVFERM-KNKNVISWTAMLVGLAQNGHARDAL 443
Query: 307 KFLYLMK 313
K M+
Sbjct: 444 KLFDQMQ 450
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 66/267 (24%), Positives = 119/267 (44%), Gaps = 17/267 (6%)
Query: 16 LIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLR 75
LI+ C+ D G L I +R + L+ ++ ++ CG L A +F+ M +
Sbjct: 363 LIQLCSRTADLDGGKILHGFIYRR-GLDLNLVLPTAIVDLYAKCGSLAYASSVFERMKNK 421
Query: 76 DFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMEL 135
+ SW M+VG ++ + LF +M + + F A +V ++ C +
Sbjct: 422 NVISWTAMLVGLAQNGHARDALKLFDQMQNER-----VTFNALTLVSLVYCCTLLGLLRE 476
Query: 136 GKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQ-LKRHNTVVWTAKIVNNC 194
G+ VH L + + + + +LI+ Y K + A+ VF L + +++ + I
Sbjct: 477 GRSVHATLTRFHFASEVVVMTALIDMYAKCSKINSAEMVFKYGLTPKDVILYNSMISGYG 536
Query: 195 REGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC---GGVDDDGNCGRQMHANIVKI--G 249
G H+ + M RE ++ N TF S+L AC G V++ G + N+VK
Sbjct: 537 MHGLGHKALCVYHRMNREGLQPNESTFVSLLSACSHSGLVEE----GIALFQNMVKDHNT 592
Query: 250 LESDEYVQCGLVDMYGKCRLLRDAERV 276
+D+ C +VD+ + LR AE +
Sbjct: 593 TPTDKLYAC-IVDLLSRAGRLRQAEEL 618
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 72/152 (47%), Gaps = 2/152 (1%)
Query: 154 LTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRER 213
L L+ Y CLE+A VF ++ + TV+ A + + ++ K M R
Sbjct: 91 LVAKLVAAYSSLGCLENARKVFDEIPQPKTVLCNAMVNGYLQNERYNDCIELLKMMSRCH 150
Query: 214 IKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDA 273
++ +SYT + LKAC + D G ++ V GL ++ +++ K + A
Sbjct: 151 LEFDSYTCNFALKACMFLLDY-EMGMEVIGLAVCKGLAGGRFLGSSILNFLVKTGDIMCA 209
Query: 274 ERVFELIVDKKNIASWNAMLVGYIRNGLYVEA 305
+ F +V+ K++ WN M+ G+++ GL+ E
Sbjct: 210 QFFFHQMVE-KDVVCWNVMIGGFMQEGLFREG 240
>gi|255578455|ref|XP_002530092.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223530403|gb|EEF32291.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 718
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 103/358 (28%), Positives = 167/358 (46%), Gaps = 37/358 (10%)
Query: 8 ITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQ 67
+ +Y L + C+ A ++ +H+ N P + LNR + + C L AR+
Sbjct: 55 VPYSLYASLFQLCSSTLSIVEARKIESHLIT-FNPTPPIFLLNRAIETYGKCECLKDARE 113
Query: 68 LFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKAC 127
LFDEMP RD SW +I Y ++ + LF +M K + F + VLK+C
Sbjct: 114 LFDEMPQRDGGSWNAIIKAYTQCGYAEKALGLFKDMNKEGVFANEITFAS-----VLKSC 168
Query: 128 VCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWT 187
+++ L +Q+HGL+ K G N+ L +L++ YGK + + +A +F++++ N V W
Sbjct: 169 SDVLDLSLSRQIHGLIVKCGFCGNVILGSALVDVYGKCKVMSEARLMFNEIENCNDVTWN 228
Query: 188 AKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVK 247
+ G+ + F +M + ++ ++TFS+ L AC + N G Q+HA +K
Sbjct: 229 VIVRRYLDVGNEREAVKMFFKMFQTDVRPLNFTFSNALIACSAMRAL-NEGMQIHAFAIK 287
Query: 248 IGLESDEYVQCGLVDMYGKCRLLRDAERVF----------------------------EL 279
I E DE V L +MY KC L A +F EL
Sbjct: 288 IKFEEDEAVSSSLSNMYAKCGKLESARMIFDQHGSRDVISWTSMVSAYALSGRTREAREL 347
Query: 280 I--VDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
+ + ++ SWNAML GYIR+ + EA F+ LM+ + I + L C+ IS
Sbjct: 348 FEKMPEWSVVSWNAMLAGYIRSLQWEEALDFVCLMRRTTEDIDHITLGLLLNVCAGIS 405
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/276 (28%), Positives = 133/276 (48%), Gaps = 15/276 (5%)
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK---GHMLLVFP 116
G+ AR+LF++MP SW M+ GY+ ++E + F +M+R H+ L
Sbjct: 339 GRTREARELFEKMPEWSVVSWNAMLAGYIRSLQWEEALD-FVCLMRRTTEDIDHITLGL- 396
Query: 117 AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFS 176
+L C ++E+GKQ HG +++ G S I + +L++ YGK L A F
Sbjct: 397 ------LLNVCAGISDVEMGKQAHGFIYRHGFSSCILVGNALLDMYGKCGNLRSARVWFY 450
Query: 177 QLKR-HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDG 235
Q+ + + + W A + + R Q F EM E K +++TF ++L AC +
Sbjct: 451 QMSQSRDNISWNALLTSYARHHQSEQAMMIFGEMQWE-TKPSTFTFGTLLAACANIFALD 509
Query: 236 NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
G+++H +++ G D + LVDMY KCR L A VF +++ WN++++G
Sbjct: 510 Q-GKEIHGFMIRNGYNLDTVISGALVDMYSKCRCLSYALTVFNR-AGSRDVILWNSIILG 567
Query: 296 YIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
NG E K M+ G++ + + +AC
Sbjct: 568 CCHNGRGKEVLKLFGQMEKEGVKPDHVTFHGVLLAC 603
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 111/221 (50%), Gaps = 2/221 (0%)
Query: 116 PAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVF 175
P + + + C T+++ +++ L + I L I YGK CL+DA +F
Sbjct: 56 PYSLYASLFQLCSSTLSIVEARKIESHLITFNPTPPIFLLNRAIETYGKCECLKDARELF 115
Query: 176 SQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDG 235
++ + + W A I + G+ + FK+M +E + N TF+SVLK+C V D
Sbjct: 116 DEMPQRDGGSWNAIIKAYTQCGYAEKALGLFKDMNKEGVFANEITFASVLKSCSDVLDL- 174
Query: 236 NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
+ RQ+H IVK G + + LVD+YGKC+++ +A +F I + N +WN ++
Sbjct: 175 SLSRQIHGLIVKCGFCGNVILGSALVDVYGKCKVMSEARLMFNEI-ENCNDVTWNVIVRR 233
Query: 296 YIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
Y+ G EA K + M + ++ ++ IACS++ A
Sbjct: 234 YLDVGNEREAVKMFFKMFQTDVRPLNFTFSNALIACSAMRA 274
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 92/191 (48%), Gaps = 7/191 (3%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL-RDFNSWAVMIVGYVDVADYQECI 97
R +L N LL M+ CG L +AR F +M RD SW ++ Y ++ +
Sbjct: 419 RHGFSSCILVGNALLDMYGKCGNLRSARVWFYQMSQSRDNISWNALLTSYARHHQSEQAM 478
Query: 98 TLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGS 157
+F EM K + +L AC ++ GK++HG + + G + + ++G+
Sbjct: 479 MIFGEMQWETKP------STFTFGTLLAACANIFALDQGKEIHGFMIRNGYNLDTVISGA 532
Query: 158 LINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKN 217
L++ Y K RCL A VF++ + ++W + I+ C G +V F +M +E +K +
Sbjct: 533 LVDMYSKCRCLSYALTVFNRAGSRDVILWNSIILGCCHNGRGKEVLKLFGQMEKEGVKPD 592
Query: 218 SYTFSSVLKAC 228
TF VL AC
Sbjct: 593 HVTFHGVLLAC 603
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 68/279 (24%), Positives = 114/279 (40%), Gaps = 37/279 (13%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ ++ C + AR +F+E+ + +W V++ Y+DV + +E + +F +M + +
Sbjct: 199 LVDVYGKCKVMSEARLMFNEIENCNDVTWNVIVRRYLDVGNEREAVKMFFKMFQTDVRPL 258
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
F +I AC + G Q+H K+ + +++ SL N Y K LE A
Sbjct: 259 NFTFSNALI-----ACSAMRALNEGMQIHAFAIKIKFEEDEAVSSSLSNMYAKCGKLESA 313
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMG--------------------- 210
+F Q + + WT+ + G + F++M
Sbjct: 314 RMIFDQHGSRDVISWTSMVSAYALSGRTREARELFEKMPEWSVVSWNAMLAGYIRSLQWE 373
Query: 211 ----------RERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGL 260
R + T +L C G+ D G+Q H I + G S V L
Sbjct: 374 EALDFVCLMRRTTEDIDHITLGLLLNVCAGISDV-EMGKQAHGFIYRHGFSSCILVGNAL 432
Query: 261 VDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRN 299
+DMYGKC LR A F + ++ SWNA+L Y R+
Sbjct: 433 LDMYGKCGNLRSARVWFYQMSQSRDNISWNALLTSYARH 471
>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 837
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 95/301 (31%), Positives = 152/301 (50%), Gaps = 32/301 (10%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLF--------- 100
N+LL GQ++ AR+LFD+MP +D SW MI YV+V E LF
Sbjct: 69 NQLLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEARELFDGCSCKSSI 128
Query: 101 ---------------AEMMKRKKGHMLLVFPA--WIIVCVLKACVCTMNMELGKQVHGLL 143
E + L + A + + VL+ C ++ G+ +HG +
Sbjct: 129 TWSSIISGYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEMIHGFV 188
Query: 144 FKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK--RHNTVVWTAKIVNNCREGHFHQ 201
K G N+ + L++ Y K +C+ +A+F+F L+ R N V+WTA + + G ++
Sbjct: 189 VKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNGDGYK 248
Query: 202 VFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC-GRQMHANIVKIGLESDEYVQCGL 260
F+ M + ++ N YTF ++L AC V C G Q+H IVK G S+ YVQ L
Sbjct: 249 AVEFFRYMHAQGVECNQYTFPTILTACSSV--LARCFGEQVHGFIVKSGFGSNVYVQSAL 306
Query: 261 VDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQ 320
VDMY KC L++A+ + E + D ++ SWN+++VG++R+GL EA + M ++I
Sbjct: 307 VDMYAKCGDLKNAKNMLETMED-DDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKID 365
Query: 321 E 321
+
Sbjct: 366 D 366
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 78/309 (25%), Positives = 142/309 (45%), Gaps = 15/309 (4%)
Query: 31 ELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNS--WAVMIVGYV 88
E+++ + + + + L+ M+ C + A LF + N W M+ GY
Sbjct: 182 EMIHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYA 241
Query: 89 DVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGS 148
D + + F M + FP +L AC + G+QVHG + K G
Sbjct: 242 QNGDGYKAVEFFRYMHAQGVECNQYTFPT-----ILTACSSVLARCFGEQVHGFIVKSGF 296
Query: 149 SRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKE 208
N+ + +L++ Y K L++A + ++ + V W + +V R G + FK
Sbjct: 297 GSNVYVQSALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKN 356
Query: 209 MGRERIKKNSYTFSSVLKAC--GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGK 266
M +K + YTF SVL C G ++ + +H I+K G E+ + V LVDMY K
Sbjct: 357 MHGRNMKIDDYTFPSVLNCCVVGSINP-----KSVHGLIIKTGFENYKLVSNALVDMYAK 411
Query: 267 CRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLIND 326
+ A VFE +++ K++ SW +++ GY +N + E+ K M+ +G+ + ++
Sbjct: 412 TGDMDCAYTVFEKMLE-KDVISWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIVAS 470
Query: 327 LRIACSSIS 335
+ AC+ ++
Sbjct: 471 ILSACAELT 479
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 79/281 (28%), Positives = 134/281 (47%), Gaps = 9/281 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ CG L A+ + + M D SW ++VG+V +E + LF M R
Sbjct: 306 LVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKID 365
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
FP+ + CV V ++N K VHGL+ K G ++ +L++ Y K ++ A
Sbjct: 366 DYTFPSVLNCCV----VGSIN---PKSVHGLIIKTGFENYKLVSNALVDMYAKTGDMDCA 418
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
VF ++ + + WT+ + + + F +M + + + +S+L AC +
Sbjct: 419 YTVFEKMLEKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIVASILSACAEL 478
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
G+Q+H + +K GL + V LV MY KC L DA+ +F + + K++ +W A
Sbjct: 479 TLL-EFGKQVHLDFIKSGLRWSQSVYNSLVAMYAKCGCLDDADAIF-VSMQVKDVITWTA 536
Query: 292 MLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
++VGY +NG + KF M +SG + L ACS
Sbjct: 537 IIVGYAQNGKGRNSLKFYDAMVSSGTRPDFITFIGLLFACS 577
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 120/250 (48%), Gaps = 11/250 (4%)
Query: 47 LFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR 106
L N L+ M+ G +D A +F++M +D SW ++ GY ++E + +F +M R
Sbjct: 400 LVSNALVDMYAKTGDMDCAYTVFEKMLEKDVISWTSLVTGYAQNNSHEESLKIFCDM--R 457
Query: 107 KKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
G V P +I+ +L AC +E GKQVH K G + S+ SL+ Y K
Sbjct: 458 VTG----VNPDQFIVASILSACAELTLLEFGKQVHLDFIKSGLRWSQSVYNSLVAMYAKC 513
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
CL+DAD +F ++ + + WTA IV + G + M + + TF +L
Sbjct: 514 GCLDDADAIFVSMQVKDVITWTAIIVGYAQNGKGRNSLKFYDAMVSSGTRPDFITFIGLL 573
Query: 226 KAC--GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
AC G+ D+G Q + I + Y C ++D++G+ L +A+++ + + K
Sbjct: 574 FACSHAGLVDEGRKYFQQMNKVYGIKPGPEHYA-C-MIDLFGRSGKLDEAKQLLDQMDVK 631
Query: 284 KNIASWNAML 293
+ W ++L
Sbjct: 632 PDATVWKSLL 641
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 78/144 (54%), Gaps = 2/144 (1%)
Query: 194 CREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESD 253
C+ G + F+ F+ M E K + +T SVL+ C + G +H +VK G E +
Sbjct: 138 CKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLI-QTGEMIHGFVVKNGFEGN 196
Query: 254 EYVQCGLVDMYGKCRLLRDAERVFE-LIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLM 312
+V GLVDMY KC+ + +AE +F+ L D+KN W AM+ GY +NG +A +F M
Sbjct: 197 VFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNGDGYKAVEFFRYM 256
Query: 313 KASGIQIQESLINDLRIACSSISA 336
A G++ + + ACSS+ A
Sbjct: 257 HAQGVECNQYTFPTILTACSSVLA 280
>gi|297835482|ref|XP_002885623.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331463|gb|EFH61882.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 624
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 92/329 (27%), Positives = 161/329 (48%), Gaps = 12/329 (3%)
Query: 6 LPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTA 65
+P+ Y L+K+CT K + H+ + + + L+ N LL M+ CG L+ A
Sbjct: 47 IPVDRRFYNTLLKKCTVFKLLTQGRIVHGHLIQSI-FRHDLVMNNTLLNMYAKCGSLEEA 105
Query: 66 RQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLK 125
R++FD+MP RDF +W +I GY + + LF +M++ + + V+K
Sbjct: 106 RKVFDKMPERDFVTWTTLISGYSQHDRPFDALVLFNQMLR-----FGFSPNEFTLSSVIK 160
Query: 126 ACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVV 185
A G Q+HG K G N+ + +L++ Y ++ ++DA VF L+ N V
Sbjct: 161 AAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVS 220
Query: 186 WTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDG--NCGRQMHA 243
W A I + R + F+ M RE + + ++++S+ AC G G+ +HA
Sbjct: 221 WNALIAGHARRCGTEKALELFQGMLREGFRPSHFSYASLFGACSST---GFLEQGKWVHA 277
Query: 244 NIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYV 303
++K G + + L+DMY K + DA ++F+ + K+++ SWN++L Y ++G
Sbjct: 278 YMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLA-KRDVVSWNSLLTAYAQHGFGN 336
Query: 304 EATKFLYLMKASGIQIQESLINDLRIACS 332
EA + M+ GI+ E + ACS
Sbjct: 337 EAVCWFEEMRRGGIRPNEISFLSVLTACS 365
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 111/246 (45%), Gaps = 14/246 (5%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR--KKG 109
LL ++ G +D A+ +FD + R+ SW +I G+ ++ + LF M++ +
Sbjct: 193 LLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRCGTEKALELFQGMLREGFRPS 252
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
H + AC T +E GK VH + K G +L++ Y K +
Sbjct: 253 HF-------SYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIH 305
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
DA +F +L + + V W + + + G ++ F+EM R I+ N +F SVL AC
Sbjct: 306 DARKIFDRLAKRDVVSWNSLLTAYAQHGFGNEAVCWFEEMRRGGIRPNEISFLSVLTACS 365
Query: 230 --GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
G+ D+G + + K G+ + + +VD+ G+ L A R E + + A
Sbjct: 366 HSGLLDEG---WHYYELMKKDGIVLEAWHYVTIVDLLGRAGDLNRALRFIEEMPIEPTAA 422
Query: 288 SWNAML 293
W A+L
Sbjct: 423 IWKALL 428
>gi|168004577|ref|XP_001754988.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694092|gb|EDQ80442.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 437
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 81/274 (29%), Positives = 139/274 (50%), Gaps = 10/274 (3%)
Query: 44 PTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEM 103
P+ LN LL M++ CG + ARQ+FD M RD +W +M+ GY + +E ++ +M
Sbjct: 8 PSTFVLNALLNMYMKCGSITDARQVFDNMRERDMFTWTMMLTGYARLGHLEEAYRVYEQM 67
Query: 104 MKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYG 163
++ + L +L C ++E GK+VH + K G + L +LI+ Y
Sbjct: 68 LEER-----LPLDGVTFTTILSVCASLRSLEKGKKVHCDMIKAGIHSDRILGNTLIDMYA 122
Query: 164 KFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSS 223
K + +F+++K + V W I R G+F + F F+ M +K + T+
Sbjct: 123 KCGNIRQGHTMFTEMKDRDVVTWNIIIAGAARNGYFDEAFELFEAMREAGLKPDKVTYVC 182
Query: 224 VLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
VL C ++ GR +H+ I++ GLE D +V L++MY CR L DA ++FE + +
Sbjct: 183 VLNVCSSLEQ----GRILHSYIIEAGLELDLWVGTALLNMYSNCRSLEDALQIFEKL-PE 237
Query: 284 KNIASWNAMLVGYIRNGLYVEATKFLYLMKASGI 317
+N+ +W +++ Y + G+ +A F M GI
Sbjct: 238 RNLVTWTSVIAAYAQAGIPEKAWIFYEKMLKEGI 271
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 80/279 (28%), Positives = 143/279 (51%), Gaps = 10/279 (3%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
+ I + N L+ M+ CG + +F EM RD +W ++I G + E
Sbjct: 104 KAGIHSDRILGNTLIDMYAKCGNIRQGHTMFTEMKDRDVVTWNIIIAGAARNGYFDEAFE 163
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
LF M R+ G L VCVL C ++E G+ +H + + G ++ + +L
Sbjct: 164 LFEAM--REAG---LKPDKVTYVCVLNVCS---SLEQGRILHSYIIEAGLELDLWVGTAL 215
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
+N Y R LEDA +F +L N V WT+ I + G + + +++M +E I +
Sbjct: 216 LNMYSNCRSLEDALQIFEKLPERNLVTWTSVIAAYAQAGIPEKAWIFYEKMLKEGIVADK 275
Query: 219 YTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE 278
+ +++VL C + D G+Q+H ++VK G+ +D+ + L+DMY KC A ++ E
Sbjct: 276 FAYTTVLHVCATMGDLEK-GKQVHDHMVKSGIATDQILDSTLIDMYAKCGRTDIAHQLLE 334
Query: 279 LIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGI 317
I+D++++ S+ A++VG++R G + EA + M+ G+
Sbjct: 335 -IMDERDVVSYTALIVGHVRQGRFQEALQTFSSMQRDGV 372
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 116/227 (51%), Gaps = 10/227 (4%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL M+ +C L+ A Q+F+++P R+ +W +I Y ++ + +M+K
Sbjct: 215 LLNMYSNCRSLEDALQIFEKLPERNLVTWTSVIAAYAQAGIPEKAWIFYEKMLKEG---- 270
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+V + VL C ++E GKQVH + K G + + L +LI+ Y K + A
Sbjct: 271 -IVADKFAYTTVLHVCATMGDLEKGKQVHDHMVKSGIATDQILDSTLIDMYAKCGRTDIA 329
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
+ + + V +TA IV + R+G F + F M R+ + N+ TF VLKAC G+
Sbjct: 330 HQLLEIMDERDVVSYTALIVGHVRQGRFQEALQTFSSMQRDGVLPNTVTFVGVLKACTGL 389
Query: 232 DDDGNC--GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERV 276
G+ GR++HA+I+K GL D ++ L DMY KC DA+ V
Sbjct: 390 ---GSLVEGRRIHASIIKAGLAQDSSLKYALADMYAKCSSWTDAQEV 433
>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
Length = 1161
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 99/301 (32%), Positives = 150/301 (49%), Gaps = 13/301 (4%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R IK N L+ M+ CG + A+ +F+ RD SW MI G+ Y+
Sbjct: 514 RSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQHGSYEAAYK 573
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
LF EM K + F + VL C +ELG+Q+H L+ + G +++L +L
Sbjct: 574 LFLEMKKEGLEPDKITFAS-----VLVGCKNPEALELGRQIHMLIIESGLQLDVNLGNAL 628
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
IN Y + L+DA VF L+ N + WTA I +G + F F +M + K
Sbjct: 629 INMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQNDGFKPVK 688
Query: 219 YTFSSVLKAC---GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAER 275
TFSS+LKAC +D+ G+++ A+I+ G E D V L+ Y K + DA +
Sbjct: 689 STFSSILKACMSSACLDE----GKKVIAHILNSGYELDTGVGNALISAYSKSGSMTDARK 744
Query: 276 VFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
VF+ + + ++I SWN M+ GY +NGL A +F Y M+ G+ + + + ACSS S
Sbjct: 745 VFDKMPN-RDIMSWNKMIAGYAQNGLGGTALQFAYQMQEQGVVLNKFSFVSILNACSSFS 803
Query: 336 A 336
A
Sbjct: 804 A 804
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 95/334 (28%), Positives = 160/334 (47%), Gaps = 14/334 (4%)
Query: 2 DNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQ 61
D + + TT Y ++ C+ K + GA EL++ V + N L+ M+ CG
Sbjct: 379 DGVVMNRTT--YLSVLNACSTSK-ALGAGELIHSHISEVGHSSDVQIGNSLISMYARCGD 435
Query: 62 LDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR--KKGHMLLVFPAWI 119
L AR+LF+ MP RD SW +I GY D E + L+ +M K G + +
Sbjct: 436 LPRARELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLH---- 491
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
+L AC + GK +H + + G N L +L+N Y + + +A VF +
Sbjct: 492 ---LLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTR 548
Query: 180 RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGR 239
+ + W + I + + G + + F EM +E ++ + TF+SVL C + GR
Sbjct: 549 ARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKN-PEALELGR 607
Query: 240 QMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRN 299
Q+H I++ GL+ D + L++MY +C L+DA VF + +N+ SW AM+ G+
Sbjct: 608 QIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSL-RHRNVMSWTAMIGGFADQ 666
Query: 300 GLYVEATKFLYLMKASGIQIQESLINDLRIACSS 333
G +A + + M+ G + +S + + AC S
Sbjct: 667 GEDRKAFELFWQMQNDGFKPVKSTFSSILKACMS 700
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 79/283 (27%), Positives = 135/283 (47%), Gaps = 7/283 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M++ CG L A ++F + R+ SW MI G+ D + ++ LF +M
Sbjct: 626 NALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQNDGFK 685
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ F + +LKAC+ + ++ GK+V + G + + +LI+ Y K +
Sbjct: 686 PVKSTFSS-----ILKACMSSACLDEGKKVIAHILNSGYELDTGVGNALISAYSKSGSMT 740
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
DA VF ++ + + W I + G +M + + N ++F S+L AC
Sbjct: 741 DARKVFDKMPNRDIMSWNKMIAGYAQNGLGGTALQFAYQMQEQGVVLNKFSFVSILNACS 800
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
G+++HA IVK ++ D V L+ MY KC L +A+ VF+ +K N+ +W
Sbjct: 801 SFSALEE-GKRVHAEIVKRKMQGDVRVGAALISMYAKCGSLEEAQEVFDNFTEK-NVVTW 858
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
NAM+ Y ++GL +A F M GI+ S + AC+
Sbjct: 859 NAMINAYAQHGLASKALDFFNCMDKEGIKPDGSTFTSILSACN 901
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 88/335 (26%), Positives = 156/335 (46%), Gaps = 16/335 (4%)
Query: 7 PITTD--MYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDT 64
P T+ Y L++ CT ++ A A + + + + P + N L+ M+V C +
Sbjct: 77 PTETNRAAYVDLVQNCTRKRSLAEAKRIHAQMVE-AGVGPDIFLSNLLINMYVKCRSVSD 135
Query: 65 ARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWII-VCV 123
A Q+F +MP RD SW +I Y ++ LF EM P+ I + +
Sbjct: 136 AHQVFLKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAG------FIPSKITYISI 189
Query: 124 LKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNT 183
L AC +E GK++H + + G R+ + SL+N YGK L A VFS + R +
Sbjct: 190 LTACCSPAELEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDV 249
Query: 184 VVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA--CGGVDDDGNCGRQM 241
V + + ++ + + F +M E I + T+ ++L A + D+ G+++
Sbjct: 250 VSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDE---GKRI 306
Query: 242 HANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGL 301
H V GL SD V L M+ +C + A++ E D +++ +NA++ ++G
Sbjct: 307 HKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFAD-RDVVVYNALIAALAQHGH 365
Query: 302 YVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
Y EA + Y M++ G+ + + + ACS+ A
Sbjct: 366 YEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKA 400
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 72/285 (25%), Positives = 135/285 (47%), Gaps = 7/285 (2%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L M V CG + A+Q + RD + +I Y+E + +M R G
Sbjct: 325 LATMFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQM--RSDG-- 380
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+V + VL AC + + G+ +H + ++G S ++ + SLI+ Y + L A
Sbjct: 381 -VVMNRTTYLSVLNACSTSKALGAGELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRA 439
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
+F+ + + + + W A I R + +K+M E +K TF +L AC
Sbjct: 440 RELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNS 499
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
+ G+ +H +I++ G++S+ ++ L++MY +C + +A+ VFE ++I SWN+
Sbjct: 500 SAYSD-GKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEG-TRARDIISWNS 557
Query: 292 MLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
M+ G+ ++G Y A K MK G++ + + + C + A
Sbjct: 558 MIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEA 602
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/251 (28%), Positives = 111/251 (44%), Gaps = 19/251 (7%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ + G + AR++FD+MP RD SW MI GY + +M ++
Sbjct: 727 NALISAYSKSGSMTDARKVFDKMPNRDIMSWNKMIAGYAQNGLGGTALQFAYQMQEQG-- 784
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+V + V +L AC +E GK+VH + K ++ + +LI+ Y K LE
Sbjct: 785 ---VVLNKFSFVSILNACSSFSALEEGKRVHAEIVKRKMQGDVRVGAALISMYAKCGSLE 841
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
+A VF N V W A I + G + + F M +E IK + TF+S+L AC
Sbjct: 842 EAQEVFDNFTEKNVVTWNAMINAYAQHGLASKALDFFNCMDKEGIKPDGSTFTSILSAC- 900
Query: 230 GVDDDGNCGRQMHANIVKIGLESD-------EYVQCGLVDMYGKCRLLRDAERVFELIVD 282
+ G M N + LES E+ C LV + G+ ++AE + +
Sbjct: 901 -----NHSGLVMEGNRIFSSLESQHGLSPTIEHYGC-LVGLLGRAGRFQEAETLINQMPF 954
Query: 283 KKNIASWNAML 293
+ A W +L
Sbjct: 955 PPDAAVWETLL 965
>gi|255541924|ref|XP_002512026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549206|gb|EEF50695.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 810
Score = 147 bits (372), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 100/336 (29%), Positives = 170/336 (50%), Gaps = 14/336 (4%)
Query: 2 DNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQ 61
DN P C+IK CT D G E+++ + ++ + + N L+ M+ G
Sbjct: 30 DNFTFP-------CVIKACTGSLDR-GLGEVIHGMVIKMGLLLDVFVGNALIAMYGKFGF 81
Query: 62 LDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIV 121
+D A ++F MP+R+ SW +I G+ + ++C + EMM ++G L+ +V
Sbjct: 82 VDAAVKVFHYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAGEEG---LLPDIATLV 138
Query: 122 CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH 181
VL C +++++G ++HGL KLG S ++ + SL++ Y K L +A +F + R
Sbjct: 139 TVLPVCAREVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQMLFDKNNRK 198
Query: 182 NTVVWTAKIVNNCREGHFHQVFNDFKEMG-RERIKKNSYTFSSVLKACGGVDDDGNCGRQ 240
N V W I C +G+ + FN F+EM +E I+ N T ++L AC + + ++
Sbjct: 199 NAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPACLEISQLRSL-KE 257
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
+H ++ G + DE V G V Y KC +L AERVF ++ K + SWNA++ G +NG
Sbjct: 258 LHGYSIRHGFQYDELVANGFVAAYAKCGMLICAERVF-YSMETKTVNSWNALIGGCAQNG 316
Query: 301 LYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+A M SG+ I L +A + + +
Sbjct: 317 DPRKALNLYIQMTYSGLVPDWFTIGSLLLASAHLKS 352
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/291 (25%), Positives = 132/291 (45%), Gaps = 6/291 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ CG L A+ LFD+ ++ SW MI G E LF EM ++
Sbjct: 173 NSLVDMYSKCGYLTEAQMLFDKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDI 232
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ V ++ +L AC+ + K++HG + G + + + Y K L
Sbjct: 233 EVNEV----TVLNILPACLEISQLRSLKELHGYSIRHGFQYDELVANGFVAAYAKCGMLI 288
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A+ VF ++ W A I + G + N + +M + + +T S+L A
Sbjct: 289 CAERVFYSMETKTVNSWNALIGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASA 348
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ G+++H +++ GLE D ++ L+ +Y C A +F+ + +K ++ SW
Sbjct: 349 HLKSL-RYGKEVHGFVLRHGLEIDSFIGISLLSLYIHCGESSSARLLFDGMEEKSSV-SW 406
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKIN 340
NAM+ GY +NGL +A + + G Q + + + ACS SA ++
Sbjct: 407 NAMISGYSQNGLPEDALILFRKLVSDGFQPSDIAVVSVLGACSQQSALRLG 457
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 68/273 (24%), Positives = 122/273 (44%), Gaps = 13/273 (4%)
Query: 47 LFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR 106
L N + + CG L A ++F M + NSW +I G D ++ + L+ +M
Sbjct: 272 LVANGFVAAYAKCGMLICAERVFYSMETKTVNSWNALIGGCAQNGDPRKALNLYIQMTYS 331
Query: 107 KKGHMLLVFPAWIIV-CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
+ P W + +L A ++ GK+VHG + + G + + SL++ Y
Sbjct: 332 G------LVPDWFTIGSLLLASAHLKSLRYGKEVHGFVLRHGLEIDSFIGISLLSLY--I 383
Query: 166 RCLED--ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSS 223
C E A +F ++ ++V W A I + G F+++ + + + S
Sbjct: 384 HCGESSSARLLFDGMEEKSSVSWNAMISGYSQNGLPEDALILFRKLVSDGFQPSDIAVVS 443
Query: 224 VLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
VL AC G++ H +K L D +V C +DMY K ++++ VF+ +
Sbjct: 444 VLGACS-QQSALRLGKETHCYALKALLMEDVFVACSTIDMYAKSGCIKESRSVFDGL-KN 501
Query: 284 KNIASWNAMLVGYIRNGLYVEATKFLYLMKASG 316
K++ASWNA++ Y +G E+ + M+ G
Sbjct: 502 KDLASWNAIIAAYGVHGDGEESIELFERMRKVG 534
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/255 (26%), Positives = 116/255 (45%), Gaps = 20/255 (7%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL +++ CG+ +AR LFD M + SW MI GY ++ + LF +++
Sbjct: 378 LLSLYIHCGESSSARLLFDGMEEKSSVSWNAMISGYSQNGLPEDALILFRKLVSDG---- 433
Query: 112 LLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
P+ I +V VL AC + LGK+ H K ++ + S I+ Y K C+++
Sbjct: 434 --FQPSDIAVVSVLGACSQQSALRLGKETHCYALKALLMEDVFVACSTIDMYAKSGCIKE 491
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC-- 228
+ VF LK + W A I G + F+ M + + +TF +L C
Sbjct: 492 SRSVFDGLKNKDLASWNAIIAAYGVHGDGEESIELFERMRKVGQMPDGFTFIGILTVCSH 551
Query: 229 GGVDDDG----NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
G+ ++G N + H K+ E+ C ++DM G+ L DA R+ + ++
Sbjct: 552 AGLVEEGLKYFNEMQNFHGIEPKL-----EHYAC-VMDMLGRAGRLDDALRLVHEMPEQP 605
Query: 285 NIASWNAMLVGYIRN 299
+ W+++L + RN
Sbjct: 606 DSRVWSSLL-SFCRN 619
>gi|326494876|dbj|BAJ94557.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 783
Score = 147 bits (371), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 93/305 (30%), Positives = 143/305 (46%), Gaps = 6/305 (1%)
Query: 35 HIRKRVN-IKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADY 93
H R V+ + P L N LL + G+L AR+LFD MP R+ SW I Y
Sbjct: 53 HARAVVSGLLPDLFLANLLLRGYSKLGRLGDARRLFDSMPSRNLVSWGSAISMYAQHGRE 112
Query: 94 QECITLFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNI 152
+ + LFA P +++ L+AC + G+QVHG+ KLG N+
Sbjct: 113 DDALLLFAAFPSAGAASPDGEPPNEFLLASALRACAQSRAARFGEQVHGVAAKLGLDANV 172
Query: 153 SLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRE 212
+ +L+N Y K ++ A VF L N V WTA I + G F MG +
Sbjct: 173 FVGTALVNLYAKAGRIDAAMSVFDALPARNPVTWTAVITGYSQAGQAGVALELFGRMGLD 232
Query: 213 RIKKNSYTFSSVLKACGGVD-DDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLR 271
++ + + +S AC G+ +G GRQ+H + ESD V L+D+Y KC L
Sbjct: 233 GVRPDRFVLASAASACSGLGFVEG--GRQIHGYAYRTAAESDASVVNALIDLYCKCSRLL 290
Query: 272 DAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
A R+F+ + + +N+ SW M+ GY++N L EA + + +G Q + +C
Sbjct: 291 LARRLFDSM-ENRNLVSWTTMIAGYMQNSLDTEAMSMFWQLSQAGWQPDVFACTSILNSC 349
Query: 332 SSISA 336
S++A
Sbjct: 350 GSLAA 354
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 77/269 (28%), Positives = 134/269 (49%), Gaps = 7/269 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ C L AR +F+ + D S+ MI GY + D + +F +M
Sbjct: 378 NALIDMYAKCEHLTEARAVFEALAEDDAISYNAMIEGYARLGDLTGAVEIFGKMRYCSLK 437
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
LL F V +L ++EL KQ+HGL+ K G+S ++ +LI+ Y KF ++
Sbjct: 438 PSLLTF-----VSLLGVSSSRSDLELSKQIHGLIVKSGTSLDLYAGSALIDVYSKFSLVD 492
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
DA VFS ++ + V+W A I + + F + + N +TF +++
Sbjct: 493 DAKLVFSLMQNRDMVIWNAMIFGLAQNERGEEAVKLFARLRVSGLTPNEFTFVALVTVAS 552
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ + G+Q HA I+K G +SD ++ L+DMY KC + + +FE + K++ W
Sbjct: 553 TLASIFH-GQQFHAQIIKAGADSDPHISNALIDMYAKCGFIEEGRLLFESTLG-KDVICW 610
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
N+M+ Y ++G EA +M+ +G++
Sbjct: 611 NSMISTYAQHGHAEEALHVFGMMEGAGVE 639
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 82/308 (26%), Positives = 147/308 (47%), Gaps = 10/308 (3%)
Query: 7 PITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTAR 66
P + ++ C Q +A E ++ + ++ + + L+ ++ G++D A
Sbjct: 134 PPNEFLLASALRACA-QSRAARFGEQVHGVAAKLGLDANVFVGTALVNLYAKAGRIDAAM 192
Query: 67 QLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCVLK 125
+FD +P R+ +W +I GY + LF M + V P +++
Sbjct: 193 SVFDALPARNPVTWTAVITGYSQAGQAGVALELFGRM------GLDGVRPDRFVLASAAS 246
Query: 126 ACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVV 185
AC +E G+Q+HG ++ + + S+ +LI+ Y K L A +F ++ N V
Sbjct: 247 ACSGLGFVEGGRQIHGYAYRTAAESDASVVNALIDLYCKCSRLLLARRLFDSMENRNLVS 306
Query: 186 WTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANI 245
WT I + + + F ++ + + + + +S+L +CG + GRQ+HA++
Sbjct: 307 WTTMIAGYMQNSLDTEAMSMFWQLSQAGWQPDVFACTSILNSCGSLAAIWQ-GRQVHAHV 365
Query: 246 VKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEA 305
+K LESDEYV+ L+DMY KC L +A VFE + + I S+NAM+ GY R G A
Sbjct: 366 IKADLESDEYVKNALIDMYAKCEHLTEARAVFEALAEDDAI-SYNAMIEGYARLGDLTGA 424
Query: 306 TKFLYLMK 313
+ M+
Sbjct: 425 VEIFGKMR 432
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 80/273 (29%), Positives = 127/273 (46%), Gaps = 7/273 (2%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
+N L+ ++ C +L AR+LFD M R+ SW MI GY+ + E +++F ++ +
Sbjct: 276 VNALIDLYCKCSRLLLARRLFDSMENRNLVSWTTMIAGYMQNSLDTEAMSMFWQL--SQA 333
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
G VF +L +C + G+QVH + K + + +LI+ Y K L
Sbjct: 334 GWQPDVF---ACTSILNSCGSLAAIWQGRQVHAHVIKADLESDEYVKNALIDMYAKCEHL 390
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+A VF L + + + A I R G F +M +K + TF S+L
Sbjct: 391 TEARAVFEALAEDDAISYNAMIEGYARLGDLTGAVEIFGKMRYCSLKPSLLTFVSLL-GV 449
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
D +Q+H IVK G D Y L+D+Y K L+ DA+ VF L+ +++
Sbjct: 450 SSSRSDLELSKQIHGLIVKSGTSLDLYAGSALIDVYSKFSLVDDAKLVFSLM-QNRDMVI 508
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQE 321
WNAM+ G +N EA K ++ SG+ E
Sbjct: 509 WNAMIFGLAQNERGEEAVKLFARLRVSGLTPNE 541
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 100/234 (42%), Gaps = 9/234 (3%)
Query: 62 LDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIV 121
+D A+ +F M RD W MI G +E + LFA + R G L + V
Sbjct: 491 VDDAKLVFSLMQNRDMVIWNAMIFGLAQNERGEEAVKLFARL--RVSG---LTPNEFTFV 545
Query: 122 CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH 181
++ ++ G+Q H + K G+ + ++ +LI+ Y K +E+ +F
Sbjct: 546 ALVTVASTLASIFHGQQFHAQIIKAGADSDPHISNALIDMYAKCGFIEEGRLLFESTLGK 605
Query: 182 NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--GGVDDDGNCGR 239
+ + W + I + GH + + F M ++ N TF SVL AC G+ D+G
Sbjct: 606 DVICWNSMISTYAQHGHAEEALHVFGMMEGAGVEPNYVTFVSVLSACAHAGLVDEGL--H 663
Query: 240 QMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
++ K +E +V+++G+ L A+ E + + W ++L
Sbjct: 664 HFNSMKTKYAVEPGTEHYASVVNLFGRSGKLHAAKEFIERMPIEPVATIWRSLL 717
>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930 [Vitis vinifera]
gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
Length = 743
Score = 147 bits (370), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 94/342 (27%), Positives = 168/342 (49%), Gaps = 44/342 (12%)
Query: 27 AGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVG 86
A A + +HI + P L N +L ++ G L +Q+F+ MP RD SW + I G
Sbjct: 57 AYAHHVFDHIPQ-----PNLFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISG 111
Query: 87 YVDVADYQECITLFAEMMKRKKGHM-LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFK 145
Y + + + ++ M+K ++ + F +I+C CV +LG+Q++G + K
Sbjct: 112 YANYGSCSDAVRVYKLMLKDAAMNLNRITFSTMLILCSKFRCV-----DLGRQINGQILK 166
Query: 146 LGSSRNISLTGSLINFYGKF-----------------------------RC--LEDADFV 174
G ++ + L++ Y K RC +E++ +
Sbjct: 167 FGFGSDVFVGSPLVDMYTKLGLIYDAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRL 226
Query: 175 FSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDD 234
F LK +++ WT I + G + + F+EM + +TF SVL ACG +
Sbjct: 227 FCGLKERDSISWTIMITGLMQNGLEREALDMFREMRLAGFAMDQFTFGSVLTACGSLLAL 286
Query: 235 GNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLV 294
G G+Q+HA +++ + + +V LVDMY KCR ++ AE VF+ + +KN+ SW AMLV
Sbjct: 287 GE-GKQIHAYVIRTDHKDNVFVGSALVDMYSKCRSIKSAETVFKRM-PQKNVISWTAMLV 344
Query: 295 GYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
GY +NG EA K + M+ +G++ + + + +C+++++
Sbjct: 345 GYGQNGFSEEAVKIFFEMQRNGVEPDDFTLGSVISSCANLAS 386
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 77/283 (27%), Positives = 134/283 (47%), Gaps = 7/283 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N ++ + CG ++ +++LF + RD SW +MI G + +E + +F EM R G
Sbjct: 208 NTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQNGLEREALDMFREM--RLAG 265
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ F VL AC + + GKQ+H + + N+ + +L++ Y K R ++
Sbjct: 266 FAMDQF---TFGSVLTACGSLLALGEGKQIHAYVIRTDHKDNVFVGSALVDMYSKCRSIK 322
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A+ VF ++ + N + WTA +V + G + F EM R ++ + +T SV+ +C
Sbjct: 323 SAETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQRNGVEPDDFTLGSVISSCA 382
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ G Q H + GL S V L+ +YGKC ++ R+F + + ++ SW
Sbjct: 383 NLASLEE-GAQFHCRALVSGLISFITVSNALITLYGKCGSTENSHRLFTEM-NIRDEVSW 440
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
A+L GY + G E M A G++ + ACS
Sbjct: 441 TALLAGYAQFGKANETIGLFERMLAHGLKPDGVTFIGVLSACS 483
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 62/261 (23%), Positives = 117/261 (44%), Gaps = 17/261 (6%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R + K + + L+ M+ C + +A +F MP ++ SW M+VGY +E +
Sbjct: 298 RTDHKDNVFVGSALVDMYSKCRSIKSAETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVK 357
Query: 99 LFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGS 157
+F EM + V P + + V+ +C ++E G Q H G I+++ +
Sbjct: 358 IFFEMQRNG------VEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNA 411
Query: 158 LINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKN 217
LI YGK E++ +F+++ + V WTA + + G ++ F+ M +K +
Sbjct: 412 LITLYGKCGSTENSHRLFTEMNIRDEVSWTALLAGYAQFGKANETIGLFERMLAHGLKPD 471
Query: 218 SYTFSSVLKAC---GGVDDDGNCGRQMHANIVKIG--LESDEYVQCGLVDMYGKCRLLRD 272
TF VL AC G V+ G Q +++K + ++ C ++D+ G+ L +
Sbjct: 472 GVTFIGVLSACSRAGLVEK----GLQYFESMIKEHGIMPIVDHCTC-IIDLLGRAGRLEE 526
Query: 273 AERVFELIVDKKNIASWNAML 293
A + ++ W +L
Sbjct: 527 ARNFINNMPCHPDVVGWATLL 547
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 66/147 (44%), Gaps = 6/147 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ ++ CG + + +LF EM +RD SW ++ GY E I LF M+
Sbjct: 410 NALITLYGKCGSTENSHRLFTEMNIRDEVSWTALLAGYAQFGKANETIGLFERMLAHGLK 469
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQ-VHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+ F + VL AC +E G Q ++ + G + +I+ G+ L
Sbjct: 470 PDGVTF-----IGVLSACSRAGLVEKGLQYFESMIKEHGIMPIVDHCTCIIDLLGRAGRL 524
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCR 195
E+A + + H VV A ++++CR
Sbjct: 525 EEARNFINNMPCHPDVVGWATLLSSCR 551
>gi|225457769|ref|XP_002278218.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
mitochondrial [Vitis vinifera]
gi|302142763|emb|CBI19966.3| unnamed protein product [Vitis vinifera]
Length = 1048
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 94/285 (32%), Positives = 148/285 (51%), Gaps = 9/285 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+ L+ M+V CG ++ AR +F MP R S +I GY D E I LF EM
Sbjct: 590 SSLIDMYVKCGAIEAARYVFSCMPSRSVVSMNAIIAGYAQ-NDLVEAIDLFQEMQNEGLN 648
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTG-SLINFYGKFRCL 168
+ F + +L AC + LG+Q+H L+ K G + G SL+ Y +
Sbjct: 649 PSEITFAS-----LLDACTGPYKLNLGRQIHCLIQKRGLLYDGDFLGVSLLVMYMNSQRK 703
Query: 169 EDADFVFSQLK-RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
DAD +FS+ + +T++WTA I + + G + ++EM R + + TF+SVL+A
Sbjct: 704 TDADILFSEFQYPKSTILWTAIISGHTQNGCSEEALQLYQEMHRNNARPDQATFASVLRA 763
Query: 228 CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
C + G+ GR +H+ I +GL+SDE +VDMY KC ++ + +VFE + K ++
Sbjct: 764 CSILASLGD-GRMIHSLIFHVGLDSDELTGSAVVDMYAKCGDMKSSVQVFEEMGSKNDVI 822
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
SWN+M+VG+ +NG A K MK + I+ + + ACS
Sbjct: 823 SWNSMIVGFAKNGYAENALKIFDEMKHTRIRPDDVTFLGVLTACS 867
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 92/302 (30%), Positives = 142/302 (47%), Gaps = 13/302 (4%)
Query: 38 KRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECI 97
+++ + P + ++ V G+LD A LF +MP + +W VMI G+V E I
Sbjct: 275 QKLGLVPDQVAFVTVITACVGLGRLDDACDLFVQMPNTNVVAWNVMISGHVKRGCDIEAI 334
Query: 98 TLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGS 157
F M K + VL A + G VH K G + N+ + S
Sbjct: 335 DFFKNMWKTGVKSTRSTLGS-----VLSAIASLEALNYGLLVHAQAIKQGLNSNVYVGSS 389
Query: 158 LINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKN 217
LIN Y K +E A VF L N V+W A + + G+ +V F EM +
Sbjct: 390 LINMYAKCEKMEAAKKVFDALDERNLVLWNAMLGGYAQNGYASKVMKLFSEMRGCGFWPD 449
Query: 218 SYTFSSVLKACGGVDDDGNC---GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAE 274
+T++S+L AC ++ C GRQ+H+ I+K E + +V+ LVDMY KC L +A
Sbjct: 450 EFTYTSILSACACLE----CLEMGRQLHSFIIKHNFEYNLFVENTLVDMYAKCGALEEAR 505
Query: 275 RVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
+ FE I ++ N+ SWNA++VGY++ EA M GI E + + C+++
Sbjct: 506 QQFEFIRNRDNV-SWNAIIVGYVQEEDEDEAFNMFRRMILDGIAPDEVSLASILSGCANL 564
Query: 335 SA 336
A
Sbjct: 565 QA 566
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 82/284 (28%), Positives = 139/284 (48%), Gaps = 10/284 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+ L+ M+ C +++ A+++FD + R+ W M+ GY + + LF+EM R G
Sbjct: 388 SSLINMYAKCEKMEAAKKVFDALDERNLVLWNAMLGGYAQNGYASKVMKLFSEM--RGCG 445
Query: 110 HMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+P + +L AC C +E+G+Q+H + K N+ + +L++ Y K L
Sbjct: 446 ----FWPDEFTYTSILSACACLECLEMGRQLHSFIIKHNFEYNLFVENTLVDMYAKCGAL 501
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
E+A F ++ + V W A IV +E + FN F+ M + I + + +S+L C
Sbjct: 502 EEARQQFEFIRNRDNVSWNAIIVGYVQEEDEDEAFNMFRRMILDGIAPDEVSLASILSGC 561
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
+ G Q+H +VK GL++ Y L+DMY KC + A VF + +++ S
Sbjct: 562 ANLQALEQ-GEQVHCFLVKSGLQTCLYAGSSLIDMYVKCGAIEAARYVFSCM-PSRSVVS 619
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
NA++ GY +N L VEA M+ G+ E L AC+
Sbjct: 620 MNAIIAGYAQNDL-VEAIDLFQEMQNEGLNPSEITFASLLDACT 662
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 85/281 (30%), Positives = 126/281 (44%), Gaps = 42/281 (14%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ CG L AR++FD + D SW MI GYV V +E + +F +M K +
Sbjct: 223 LIDMYSKCGSLVDARKIFDAVVDPDTVSWTAMIAGYVQVGLPEEALKVFEDMQK-----L 277
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
LV V V+ ACV LG+ L+DA
Sbjct: 278 GLVPDQVAFVTVITACV-----GLGR------------------------------LDDA 302
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
+F Q+ N V W I + + G + + FK M + +K T SVL A +
Sbjct: 303 CDLFVQMPNTNVVAWNVMISGHVKRGCDIEAIDFFKNMWKTGVKSTRSTLGSVLSAIASL 362
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
+ N G +HA +K GL S+ YV L++MY KC + A++VF+ + D++N+ WNA
Sbjct: 363 EAL-NYGLLVHAQAIKQGLNSNVYVGSSLINMYAKCEKMEAAKKVFDAL-DERNLVLWNA 420
Query: 292 MLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
ML GY +NG + K M+ G E + AC+
Sbjct: 421 MLGGYAQNGYASKVMKLFSEMRGCGFWPDEFTYTSILSACA 461
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 88/298 (29%), Positives = 141/298 (47%), Gaps = 10/298 (3%)
Query: 41 NIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLF 100
N + L N L+ M+ CG L+ ARQ F+ + RD SW +IVGYV D E +F
Sbjct: 480 NFEYNLFVENTLVDMYAKCGALEEARQQFEFIRNRDNVSWNAIIVGYVQEEDEDEAFNMF 539
Query: 101 AEMMKRKKGHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLI 159
M+ + + P + + +L C +E G+QVH L K G + SLI
Sbjct: 540 RRMI------LDGIAPDEVSLASILSGCANLQALEQGEQVHCFLVKSGLQTCLYAGSSLI 593
Query: 160 NFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSY 219
+ Y K +E A +VFS + + V A I+ + + + F+EM E + +
Sbjct: 594 DMYVKCGAIEAARYVFSCMPSRSVVSMNA-IIAGYAQNDLVEAIDLFQEMQNEGLNPSEI 652
Query: 220 TFSSVLKACGGVDDDGNCGRQMHANIVKIGLESD-EYVQCGLVDMYGKCRLLRDAERVFE 278
TF+S+L AC G N GRQ+H I K GL D +++ L+ MY + DA+ +F
Sbjct: 653 TFASLLDACTG-PYKLNLGRQIHCLIQKRGLLYDGDFLGVSLLVMYMNSQRKTDADILFS 711
Query: 279 LIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
K+ W A++ G+ +NG EA + M + + ++ + ACS +++
Sbjct: 712 EFQYPKSTILWTAIISGHTQNGCSEEALQLYQEMHRNNARPDQATFASVLRACSILAS 769
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 96/181 (53%), Gaps = 2/181 (1%)
Query: 137 KQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCRE 196
K +H K G L ++++ Y K +E A F+QL++ + + W + + R+
Sbjct: 101 KTIHAQTLKFGFGSKGRLGSAIVDLYAKCGNVEFAAKAFNQLEKRDILAWNSVLSMYSRQ 160
Query: 197 GHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYV 256
G QV F + + N +T++ VL +C + D + G+Q+H ++K+G E + +
Sbjct: 161 GSLEQVIWCFGSLQNCGVSPNQFTYAIVLSSCARLVDI-DLGKQVHCGVIKMGFEFNSFC 219
Query: 257 QCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASG 316
+ L+DMY KC L DA ++F+ +VD + SW AM+ GY++ GL EA K M+ G
Sbjct: 220 EGSLIDMYSKCGSLVDARKIFDAVVDPDTV-SWTAMIAGYVQVGLPEEALKVFEDMQKLG 278
Query: 317 I 317
+
Sbjct: 279 L 279
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 69/283 (24%), Positives = 122/283 (43%), Gaps = 44/283 (15%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
++ CG ++ A + F+++ RD +W ++ Y ++ I F + V
Sbjct: 125 LYAKCGNVEFAAKAFNQLEKRDILAWNSVLSMYSRQGSLEQVIWCFGSLQN------CGV 178
Query: 115 FP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADF 173
P + VL +C ++++LGKQVH + K+G N GSLI+ Y K L DA
Sbjct: 179 SPNQFTYAIVLSSCARLVDIDLGKQVHCGVIKMGFEFNSFCEGSLIDMYSKCGSLVDARK 238
Query: 174 VFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDD 233
+F + +TV WTA I + G + F++M + + + F +V+ AC G+
Sbjct: 239 IFDAVVDPDTVSWTAMIAGYVQVGLPEEALKVFEDMQKLGLVPDQVAFVTVITACVGL-- 296
Query: 234 DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
GR L DA +F + + N+ +WN M+
Sbjct: 297 ----GR------------------------------LDDACDLF-VQMPNTNVVAWNVMI 321
Query: 294 VGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
G+++ G +EA F M +G++ S + + A +S+ A
Sbjct: 322 SGHVKRGCDIEAIDFFKNMWKTGVKSTRSTLGSVLSAIASLEA 364
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 115/254 (45%), Gaps = 18/254 (7%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPL-RDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGH 110
LL+M+++ + A LF E + W +I G+ +E + L+ EM +
Sbjct: 693 LLVMYMNSQRKTDADILFSEFQYPKSTILWTAIISGHTQNGCSEEALQLYQEMHRNNARP 752
Query: 111 MLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGS-LINFYGKFRCLE 169
F + VL+AC ++ G+ +H L+F +G + LTGS +++ Y K ++
Sbjct: 753 DQATFAS-----VLRACSILASLGDGRMIHSLIFHVGLDSD-ELTGSAVVDMYAKCGDMK 806
Query: 170 DADFVFSQLKRHNTVV-WTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+ VF ++ N V+ W + IV + G+ F EM RI+ + TF VL AC
Sbjct: 807 SSVQVFEEMGSKNDVISWNSMIVGFAKNGYAENALKIFDEMKHTRIRPDDVTFLGVLTAC 866
Query: 229 ---GGVDDDGNCGRQMHANIVKIGLESDEYVQCG-LVDMYGKCRLLRDAERVFELIVDKK 284
G V + GR++ +V C ++D+ G+ L++AE + + +
Sbjct: 867 SHAGRVSE----GREIFDIMVHSYKIVPRLDHCACMIDLLGRWGFLKEAEEFIDKLNFEP 922
Query: 285 NIASWNAMLVGYIR 298
N W A L+G R
Sbjct: 923 NAMIW-ATLLGACR 935
>gi|356525712|ref|XP_003531467.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
chloroplastic-like [Glycine max]
Length = 691
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 95/325 (29%), Positives = 149/325 (45%), Gaps = 8/325 (2%)
Query: 8 ITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQ 67
+ Y L+ C + G + N++ +P L +NR+L MHV CG + AR+
Sbjct: 116 VGASTYDALVSACVGLRSIRGVKRVFNYMINS-GFEPDLYVMNRVLFMHVKCGLMLDARK 174
Query: 68 LFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKAC 127
LFDEMP +D SW M+ G VD ++ E LF M K F +++A
Sbjct: 175 LFDEMPEKDVASWMTMVGGLVDTGNFSEAFRLFLCMWKEFNDGRSRTF-----ATMIRAS 229
Query: 128 VCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWT 187
+++GKQ+H K G + ++ +LI+ Y K +EDA VF Q+ TV W
Sbjct: 230 AGLGLVQVGKQIHSCALKRGVGDDHFVSCALIDMYSKCGSIEDAHCVFDQMPEKTTVGWN 289
Query: 188 AKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVK 247
+ I + G+ + + + EM + +T S V++ C + + +Q HA +V+
Sbjct: 290 SIIASYALHGYSEEALSLYFEMRDSGTTVDHFTISIVIRICARLASLEH-AKQAHAALVR 348
Query: 248 IGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATK 307
G +D LVD Y K + DA VF + KN+ SWNA++ GY +G EA +
Sbjct: 349 HGFATDIVANTALVDFYSKWGRMEDARHVFNRM-RHKNVISWNALIAGYGNHGQGQEAVE 407
Query: 308 FLYLMKASGIQIQESLINDLRIACS 332
M G+ + ACS
Sbjct: 408 MFEQMLQEGVTPTHVTFLAVLSACS 432
>gi|356507622|ref|XP_003522563.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g26540-like [Glycine max]
Length = 698
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 100/338 (29%), Positives = 150/338 (44%), Gaps = 40/338 (11%)
Query: 7 PITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTAR 66
P +Y + C+ + A ++ +H+ PT L LNR + + C L AR
Sbjct: 59 PFPFSLYALFFRLCSSHRAVVEARKVESHLLTFSPNPPTFL-LNRAIEAYAKCHCLRDAR 117
Query: 67 QLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI-IVCVLK 125
+LFDEMP D SW +I Y + E +LF M + FP + VL
Sbjct: 118 ELFDEMPQPDGGSWNALITAYSQLGFPNETFSLFLCMTRSG------FFPTEVTFASVLA 171
Query: 126 ACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVV 185
+C + + L KQVHGL+ K G N+ L SL++ YGK + DA +F ++ + N V
Sbjct: 172 SCAASSELLLSKQVHGLVTKFGFCGNVILGSSLVDVYGKCGVMADARRMFHEIPQPNAVT 231
Query: 186 WTAKIVNNCREGHFHQVFNDFKEM-GRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHAN 244
W + G + F M ++ ++TFS+ L AC V G Q+H
Sbjct: 232 WNVIVRRYLDAGDAKEAVFMFSRMFSTSAVRPMNFTFSNALVACSSVSALRE-GVQIHGV 290
Query: 245 IVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELI------------------------ 280
+VK+GL D V LV+MY KC L D +VF+ +
Sbjct: 291 VVKLGLREDNVVSSSLVNMYVKCGRLEDGFQVFDQLGFRDLVCWTSIVSGYAMSGKTLEA 350
Query: 281 ------VDKKNIASWNAMLVGYIRNGLYVEATKFLYLM 312
+ ++N+ SWNAML GY + + +A F+YLM
Sbjct: 351 REFFDEMPERNVISWNAMLAGYTQCSEWSKALDFVYLM 388
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/276 (28%), Positives = 132/276 (47%), Gaps = 15/276 (5%)
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG--HMLLVFPA 117
G+ AR+ FDEMP R+ SW M+ GY +++ + + M+ K H+ L
Sbjct: 345 GKTLEAREFFDEMPERNVISWNAMLAGYTQCSEWSKALDFVYLMLDVIKDVDHVTLGL-- 402
Query: 118 WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQ 177
+L + E+GKQVHG +++ G ++ L+ +L++ YGK L F+Q
Sbjct: 403 -----LLNVSAGISDHEMGKQVHGYIYRHGFHSDLRLSNALLDMYGKCGNLNSTRVWFNQ 457
Query: 178 LK-RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGN 236
+ R + V W A + + + Q F +M E K YTF ++L AC +
Sbjct: 458 MSDRRDRVSWNALLASYGQHQLSEQALTMFSKMQWE-TKPTQYTFVTLLLACA--NTFTL 514
Query: 237 C-GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
C G+Q+H +++ G D + LV MY KCR L A V + V +++ WN +++G
Sbjct: 515 CLGKQIHGFMIRHGFHIDTVTRTALVYMYCKCRCLEYAIEVLKRAVS-RDVIIWNTIIMG 573
Query: 296 YIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
+ N EA + +M+A GI+ + +AC
Sbjct: 574 CVHNHKGKEALELFVIMEAEGIKPDHVTFKGILLAC 609
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 83/307 (27%), Positives = 131/307 (42%), Gaps = 39/307 (12%)
Query: 59 CGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPA- 117
CG + AR++F E+P + +W V++ Y+D D +E + +F+ M V P
Sbjct: 211 CGVMADARRMFHEIPQPNAVTWNVIVRRYLDAGDAKEAVFMFSRMFSTSA-----VRPMN 265
Query: 118 WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQ 177
+ L AC + G Q+HG++ KLG + ++ SL+N Y K LED VF Q
Sbjct: 266 FTFSNALVACSSVSALREGVQIHGVVVKLGLREDNVVSSSLVNMYVKCGRLEDGFQVFDQ 325
Query: 178 LKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMG-RERIKKNSY----------------- 219
L + V WT+ + G + F EM R I N+
Sbjct: 326 LGFRDLVCWTSIVSGYAMSGKTLEAREFFDEMPERNVISWNAMLAGYTQCSEWSKALDFV 385
Query: 220 -------------TFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGK 266
T +L G+ D G+Q+H I + G SD + L+DMYGK
Sbjct: 386 YLMLDVIKDVDHVTLGLLLNVSAGISDH-EMGKQVHGYIYRHGFHSDLRLSNALLDMYGK 444
Query: 267 CRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLIND 326
C L F + D+++ SWNA+L Y ++ L +A M+ Q + +
Sbjct: 445 CGNLNSTRVWFNQMSDRRDRVSWNALLASYGQHQLSEQALTMFSKMQWETKPTQYTFVT- 503
Query: 327 LRIACSS 333
L +AC++
Sbjct: 504 LLLACAN 510
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 98/223 (43%), Gaps = 3/223 (1%)
Query: 115 FPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFV 174
FP + + C + ++V L + L I Y K CL DA +
Sbjct: 60 FPFSLYALFFRLCSSHRAVVEARKVESHLLTFSPNPPTFLLNRAIEAYAKCHCLRDAREL 119
Query: 175 FSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDD 234
F ++ + + W A I + G ++ F+ F M R TF+SVL +C +
Sbjct: 120 FDEMPQPDGGSWNALITAYSQLGFPNETFSLFLCMTRSGFFPTEVTFASVLASCAA-SSE 178
Query: 235 GNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLV 294
+Q+H + K G + + LVD+YGKC ++ DA R+F I + N +WN ++
Sbjct: 179 LLLSKQVHGLVTKFGFCGNVILGSSLVDVYGKCGVMADARRMFHEI-PQPNAVTWNVIVR 237
Query: 295 GYIRNGLYVEAT-KFLYLMKASGIQIQESLINDLRIACSSISA 336
Y+ G EA F + S ++ ++ +ACSS+SA
Sbjct: 238 RYLDAGDAKEAVFMFSRMFSTSAVRPMNFTFSNALVACSSVSA 280
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 103/229 (44%), Gaps = 13/229 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMP-LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
N LL M+ CG L++ R F++M RD SW ++ Y ++ +T+F++M K
Sbjct: 436 NALLDMYGKCGNLNSTRVWFNQMSDRRDRVSWNALLASYGQHQLSEQALTMFSKMQWETK 495
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+ V +L AC T + LGKQ+HG + + G + +L+ Y K RCL
Sbjct: 496 P------TQYTFVTLLLACANTFTLCLGKQIHGFMIRHGFHIDTVTRTALVYMYCKCRCL 549
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
E A V + + ++W I+ + F M E IK + TF +L AC
Sbjct: 550 EYAIEVLKRAVSRDVIIWNTIIMGCVHNHKGKEALELFVIMEAEGIKPDHVTFKGILLAC 609
Query: 229 ---GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAE 274
G V+ C + M + L E+ C ++++Y + R + + E
Sbjct: 610 IEEGLVEFGTGCFKSMSSEFHV--LPRMEHYDC-MIELYSRHRYMDELE 655
>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
Length = 784
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 94/301 (31%), Positives = 151/301 (50%), Gaps = 8/301 (2%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
Y ++ EC Q + H+ K +P + RL++++ C L AR++ DEM
Sbjct: 13 YDSVLTECISQTAIREGQRVHAHMIKTC-YEPPVYLRTRLIVLYNKCRCLGDARRVLDEM 71
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN 132
P R+ SW MI GY E + LF EM+ F VL +C +
Sbjct: 72 PERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTF-----ATVLTSCTSSSG 126
Query: 133 MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192
+LG+Q+H L+ K +I + SL++ Y K + +A VF L + V TA I
Sbjct: 127 FQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISG 186
Query: 193 NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLES 252
+ G + + F+ + RE ++ N T++SVL A G+ + GRQ+H+++++ L
Sbjct: 187 YAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDH-GRQVHSHVLRAKLPF 245
Query: 253 DEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLM 312
+Q L+DMY KC L + R+F+ + + + + SWNAMLVGY ++GL EA + LM
Sbjct: 246 YVVLQNSLIDMYSKCGSLTYSRRIFDSMPE-RTVISWNAMLVGYSKHGLGREAVELFKLM 304
Query: 313 K 313
K
Sbjct: 305 K 305
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 104/215 (48%), Gaps = 4/215 (1%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
VL C+ + G++VH + K + L LI Y K RCL DA V ++ N
Sbjct: 16 VLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPERN 75
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDG-NCGRQM 241
V WTA I + G+ + + F EM N +TF++VL +C G GRQ+
Sbjct: 76 VVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSC--TSSSGFQLGRQI 133
Query: 242 HANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGL 301
H+ ++K ES +V L+DMY K + +A RVF+ + + +++ S A++ GY + GL
Sbjct: 134 HSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPE-RDVVSCTAIISGYAQLGL 192
Query: 302 YVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
EA ++ G++ + A S ++A
Sbjct: 193 DEEALDLFRRLQREGMRSNYVTYASVLTALSGLAA 227
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 71/290 (24%), Positives = 132/290 (45%), Gaps = 22/290 (7%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRK---RVNIKPTLLFLNRLLLMHVSCGQLDTARQLF 69
+ ++ CT S+ F+L I + + + + + LL M+ G++ AR++F
Sbjct: 114 FATVLTSCT----SSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVF 169
Query: 70 DEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVC 129
D +P RD S +I GY + +E + LF + + + + + VL A
Sbjct: 170 DGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYAS-----VLTALSG 224
Query: 130 TMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAK 189
++ G+QVH + + + L SLI+ Y K L + +F + + W A
Sbjct: 225 LAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAM 284
Query: 190 IVNNCREGHFHQVFNDFKEMGRE-RIKKNSYTFSSVLKAC--GGVDDDGNCGRQMHANIV 246
+V + G + FK M E ++K +S TF +VL C GG++D G ++ +V
Sbjct: 285 LVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDR---GLEIFYEMV 341
Query: 247 --KIGLESD-EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
K G E + E+ C +VD++G+ + +A + + + A W ++L
Sbjct: 342 NQKDGFEPEIEHYGC-VVDLFGRAGRVEEAFEFIKKMPFEPTAAIWGSLL 390
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 55/103 (53%), Gaps = 1/103 (0%)
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYI 297
G+++HA+++K E Y++ L+ +Y KCR L DA RV + + ++ N+ SW AM+ GY
Sbjct: 29 GQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPER-NVVSWTAMISGYS 87
Query: 298 RNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKIN 340
+ G EA M SG E + +C+S S ++
Sbjct: 88 QRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLG 130
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 94/224 (41%), Gaps = 24/224 (10%)
Query: 33 LNHIRK------RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVG 86
L+H R+ R + ++ N L+ M+ CG L +R++FD MP R SW M+VG
Sbjct: 228 LDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVG 287
Query: 87 YVDVADYQECITLFAEMMKRKKGHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLF- 144
Y +E + LF M + K V P + + VL C + G ++ +
Sbjct: 288 YSKHGLGREAVELFKLMKEENK-----VKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVN 342
Query: 145 -KLGSSRNISLTGSLINFYGKFRCLEDA-DFVFSQLKRHNTVVWTAKIVNNCREGHFHQV 202
K G I G +++ +G+ +E+A +F+ +W ++ CR HQ
Sbjct: 343 QKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIW-GSLLGACR---VHQN 398
Query: 203 FNDFKEMGR-----ERIKKNSYTFSSVLKACGGVDDDGNCGRQM 241
+ + + R E +Y S L A G DD R++
Sbjct: 399 VHIGEFVARRLLEIESENAGNYVILSNLYASAGRWDDVRTVREL 442
>gi|147770185|emb|CAN69881.1| hypothetical protein VITISV_024112 [Vitis vinifera]
Length = 734
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 91/334 (27%), Positives = 169/334 (50%), Gaps = 10/334 (2%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCG 60
MD+ + +T Y CL + C + A + + +R+ V P+ N LL M+ CG
Sbjct: 78 MDDADVSVTPHSYQCLFEACGKLRSLADGRLIHDRLRRTVK-NPSGSIENCLLRMYCDCG 136
Query: 61 QLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWI 119
+++FDEM +++ SW ++I Y + ++ I LF++M + P + +
Sbjct: 137 SXIDVQKVFDEMLMKNLVSWVIVISAYAKNGELEKAIRLFSDMQASG------IRPNSAV 190
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
+ +L++C+ +ELGKQ+H + + + NI++ ++ N Y + LE A VF +
Sbjct: 191 YMSLLQSCLGPSFLELGKQMHSHVIRAQLNANITVETAICNMYVRCGWLEGAKLVFDGMD 250
Query: 180 RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGR 239
N V WT +V + F M E ++ + + FS VLK C + +D + G+
Sbjct: 251 AQNAVTWTGLMVGYTQAKKLEVALELFARMAMEGVELDEFVFSIVLKVCCXL-EDWDMGK 309
Query: 240 QMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRN 299
Q+H++IVK+G ES+ V LVD Y KC + A R F I + ++ SW+A++ G+ ++
Sbjct: 310 QIHSHIVKLGXESEVSVGTPLVDFYVKCGDIESAYRSFGRISEPNDV-SWSALISGFSQS 368
Query: 300 GLYVEATKFLYLMKASGIQIQESLINDLRIACSS 333
G + K +++ G+ + + + AC++
Sbjct: 369 GRLEDCIKIFTSLRSEGVVLNSFIYTSVFQACAA 402
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 84/278 (30%), Positives = 134/278 (48%), Gaps = 7/278 (2%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+V CG L+ A+ +FD M ++ +W ++VGY + + LFA M +
Sbjct: 232 MYVRCGWLEGAKLVFDGMDAQNAVTWTGLMVGYTQAKKLEVALELFARMAMEG-----VE 286
Query: 115 FPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFV 174
++ VLK C + ++GKQ+H + KLG +S+ L++FY K +E A
Sbjct: 287 LDEFVFSIVLKVCCXLEDWDMGKQIHSHIVKLGXESEVSVGTPLVDFYVKCGDIESAYRS 346
Query: 175 FSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDD 234
F ++ N V W+A I + G F + E + NS+ ++SV +AC +
Sbjct: 347 FGRISEPNDVSWSALISGFSQSGRLEDCIKIFTSLRSEGVVLNSFIYTSVFQACAA-QAN 405
Query: 235 GNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLV 294
N G Q H + +K GL S Y + +V MY KC L A R FE I D+ + +W A++
Sbjct: 406 LNMGSQAHGDAIKRGLVSYLYGESAMVTMYSKCGRLDYARRAFESI-DEPDAVAWTAIIS 464
Query: 295 GYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
GY +G EA F M++ G++ + ACS
Sbjct: 465 GYAYHGNAAEALGFFRRMQSYGVRPNAVTFIAVLTACS 502
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 64/285 (22%), Positives = 129/285 (45%), Gaps = 8/285 (2%)
Query: 12 MYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDE 71
+++ ++K C +D ++ +HI K + + + L+ +V CG +++A + F
Sbjct: 291 VFSIVLKVCCXLEDWDMGKQIHSHIVK-LGXESEVSVGTPLVDFYVKCGDIESAYRSFGR 349
Query: 72 MPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTM 131
+ + SW+ +I G+ ++CI +F + R +G +V ++I V +AC
Sbjct: 350 ISEPNDVSWSALISGFSQSGRLEDCIKIFTSL--RSEG---VVLNSFIYTSVFQACAAQA 404
Query: 132 NMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIV 191
N+ +G Q HG K G + +++ Y K L+ A F + + V WTA I
Sbjct: 405 NLNMGSQAHGDAIKRGLVSYLYGESAMVTMYSKCGRLDYARRAFESIDEPDAVAWTAIIS 464
Query: 192 NNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLE 251
G+ + F+ M ++ N+ TF +VL AC + + + G++
Sbjct: 465 GYAYHGNAAEALGFFRRMQSYGVRPNAVTFIAVLTACSHSGLVAEAKQYLGSMSRDYGVK 524
Query: 252 SD-EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
++ C ++D Y + LL +A + + + + SW ++L G
Sbjct: 525 PTIDHYDC-MIDTYSRAGLLXEALELINRMPFEPDAMSWKSLLGG 568
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 77/164 (46%), Gaps = 12/164 (7%)
Query: 178 LKRHNTVVWTAKI----------VNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
LKR ++ + T KI V+ ++G + + KEM + +++ + +A
Sbjct: 37 LKRSSSTIXTEKIQQGKLENLHLVSLSKQGKLKEAHDFLKEMDDADVSVTPHSYQCLFEA 96
Query: 228 CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
CG + + GR +H + + ++ L+ MY C D ++VF+ ++ KN+
Sbjct: 97 CGKLRSLAD-GRLIHDRLRRTVKNPSGSIENCLLRMYCDCGSXIDVQKVFDEML-MKNLV 154
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
SW ++ Y +NG +A + M+ASGI+ ++ L +C
Sbjct: 155 SWVIVISAYAKNGELEKAIRLFSDMQASGIRPNSAVYMSLLQSC 198
>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Vitis vinifera]
Length = 1053
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 94/301 (31%), Positives = 151/301 (50%), Gaps = 8/301 (2%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
Y ++ EC Q + H+ K +P + RL++++ C L AR++ DEM
Sbjct: 480 YDSVLTECISQTAIREGQRVHAHMIKTC-YEPPVYLRTRLIVLYNKCRCLGDARRVLDEM 538
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN 132
P R+ SW MI GY E + LF EM+ F VL +C +
Sbjct: 539 PERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTF-----ATVLTSCTSSSG 593
Query: 133 MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192
+LG+Q+H L+ K +I + SL++ Y K + +A VF L + V TA I
Sbjct: 594 FQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISG 653
Query: 193 NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLES 252
+ G + + F+ + RE ++ N T++SVL A G+ + GRQ+H+++++ L
Sbjct: 654 YAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDH-GRQVHSHVLRAKLPF 712
Query: 253 DEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLM 312
+Q L+DMY KC L + R+F+ + ++ + SWNAMLVGY ++GL EA + LM
Sbjct: 713 YVVLQNSLIDMYSKCGSLTYSRRIFDSM-PERTVISWNAMLVGYSKHGLGREAVELFKLM 771
Query: 313 K 313
K
Sbjct: 772 K 772
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 104/215 (48%), Gaps = 4/215 (1%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
VL C+ + G++VH + K + L LI Y K RCL DA V ++ N
Sbjct: 483 VLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPERN 542
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDG-NCGRQM 241
V WTA I + G+ + + F EM N +TF++VL +C G GRQ+
Sbjct: 543 VVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSC--TSSSGFQLGRQI 600
Query: 242 HANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGL 301
H+ ++K ES +V L+DMY K + +A RVF+ + ++++ S A++ GY + GL
Sbjct: 601 HSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGL-PERDVVSCTAIISGYAQLGL 659
Query: 302 YVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
EA ++ G++ + A S ++A
Sbjct: 660 DEEALDLFRRLQREGMRSNYVTYASVLTALSGLAA 694
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 71/290 (24%), Positives = 132/290 (45%), Gaps = 22/290 (7%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRK---RVNIKPTLLFLNRLLLMHVSCGQLDTARQLF 69
+ ++ CT S+ F+L I + + + + + LL M+ G++ AR++F
Sbjct: 581 FATVLTSCT----SSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVF 636
Query: 70 DEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVC 129
D +P RD S +I GY + +E + LF + + + + + VL A
Sbjct: 637 DGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYAS-----VLTALSG 691
Query: 130 TMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAK 189
++ G+QVH + + + L SLI+ Y K L + +F + + W A
Sbjct: 692 LAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAM 751
Query: 190 IVNNCREGHFHQVFNDFKEMGRE-RIKKNSYTFSSVLKAC--GGVDDDGNCGRQMHANIV 246
+V + G + FK M E ++K +S TF +VL C GG++D G ++ +V
Sbjct: 752 LVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDR---GLEIFYEMV 808
Query: 247 --KIGLESD-EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
K G E + E+ C +VD++G+ + +A + + + A W ++L
Sbjct: 809 NQKDGFEPEIEHYGC-VVDLFGRAGRVEEAFEFIKKMPFEPTAAIWGSLL 857
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 67/133 (50%), Gaps = 4/133 (3%)
Query: 208 EMGRERIKKNSYTFSSVLKACGGVDDDG-NCGRQMHANIVKIGLESDEYVQCGLVDMYGK 266
EMG + ++ + SVL C + G+++HA+++K E Y++ L+ +Y K
Sbjct: 467 EMGIQGLEVEFQGYDSVLTEC--ISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNK 524
Query: 267 CRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLIND 326
CR L DA RV + + ++N+ SW AM+ GY + G EA M SG E
Sbjct: 525 CRCLGDARRVLDEM-PERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFAT 583
Query: 327 LRIACSSISASKI 339
+ +C+S S ++
Sbjct: 584 VLTSCTSSSGFQL 596
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 92/223 (41%), Gaps = 22/223 (9%)
Query: 33 LNHIRK------RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVG 86
L+H R+ R + ++ N L+ M+ CG L +R++FD MP R SW M+VG
Sbjct: 695 LDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVG 754
Query: 87 YVDVADYQECITLFAEMMKRKKGHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLF- 144
Y +E + LF M + K V P + + VL C + G ++ +
Sbjct: 755 YSKHGLGREAVELFKLMKEENK-----VKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVN 809
Query: 145 -KLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVF 203
K G I G +++ +G+ +E+A ++ T ++ CR HQ
Sbjct: 810 QKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGACR---VHQNV 866
Query: 204 NDFKEMGR-----ERIKKNSYTFSSVLKACGGVDDDGNCGRQM 241
+ + + R E +Y S L A G DD R++
Sbjct: 867 HIGEFVARRLLEIESENAGNYVILSNLYASAGRWDDVRTVREL 909
>gi|302803175|ref|XP_002983341.1| hypothetical protein SELMODRAFT_117959 [Selaginella moellendorffii]
gi|300149026|gb|EFJ15683.1| hypothetical protein SELMODRAFT_117959 [Selaginella moellendorffii]
Length = 421
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 88/252 (34%), Positives = 130/252 (51%), Gaps = 9/252 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N LL ++ +CG L AR+LFD +P R SW M++GY + + + + LF+ M KR +
Sbjct: 27 NTLLDLYANCGSLPDARRLFDRLPARSIVSWNAMMLGYAENKEAESALELFSLMEKRCQP 86
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKL-GSSRNISLTGSLINFYGKFRCL 168
+ V LKAC E G+++ G + K+ G ++ + SL++ Y K +
Sbjct: 87 ------TSRTFVAALKACAVLAEAEEGRELEGKVAKIYGFQWDLFVANSLVDMYAKCGSM 140
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
D+ VF ++RH+ V W + I F M E +S TF + LKAC
Sbjct: 141 VDSRRVFDGMRRHDVVSWNSLISGYADNDQGEAALELFVPMELEGCAHDSRTFLASLKAC 200
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
G V + GR +H I +GL+ D + LVD YGKC + DAE+VF IV K+I +
Sbjct: 201 GCV-GALDIGRTLHGKIRDLGLDGDVVIATSLVDFYGKCGSMVDAEQVFSSIV-TKDIVA 258
Query: 289 WNAMLVGYIRNG 300
WNA+L GY R G
Sbjct: 259 WNALLTGYSRQG 270
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 87/298 (29%), Positives = 136/298 (45%), Gaps = 14/298 (4%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCG 60
M+ C P T+ + +K C ++ EL + K + L N L+ M+ CG
Sbjct: 80 MEKRCQP-TSRTFVAALKACAVLAEAEEGRELEGKVAKIYGFQWDLFVANSLVDMYAKCG 138
Query: 61 QLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWII 120
+ +R++FD M D SW +I GY D + + LF M H F A
Sbjct: 139 SMVDSRRVFDGMRRHDVVSWNSLISGYADNDQGEAALELFVPMELEGCAHDSRTFLA--- 195
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
LKAC C +++G+ +HG + LG ++ + SL++FYGK + DA+ VFS +
Sbjct: 196 --SLKACGCVGALDIGRTLHGKIRDLGLDGDVVIATSLVDFYGKCGSMVDAEQVFSSIVT 253
Query: 181 HNTVVWTAKIVNNCREGHFHQVFNDFKEM--GRERIKKNSYTFSSVLKAC--GGVDDDGN 236
+ V W A + R+G +F F M R R++ + TF +L AC G+ D G
Sbjct: 254 KDIVAWNALLTGYSRQGDTEALFQAFDRMMTSRPRVRPDGVTFLCLLTACSHSGLVDQGK 313
Query: 237 CGRQMHANIVKIGLESD-EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
R A GL+ E+ C LVD+ G+ L +A + + + N SW +L
Sbjct: 314 --RYFEAMKSIHGLDPGMEHYHC-LVDILGRSNRLEEAVAMVKEMPVVANTVSWTTVL 368
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 80/167 (47%), Gaps = 4/167 (2%)
Query: 151 NISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMG 210
++ L +L++ Y L DA +F +L + V W A ++ F M
Sbjct: 22 DVVLGNTLLDLYANCGSLPDARRLFDRLPARSIVSWNAMMLGYAENKEAESALELFSLM- 80
Query: 211 RERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKI-GLESDEYVQCGLVDMYGKCRL 269
+R + S TF + LKAC V + GR++ + KI G + D +V LVDMY KC
Sbjct: 81 EKRCQPTSRTFVAALKACA-VLAEAEEGRELEGKVAKIYGFQWDLFVANSLVDMYAKCGS 139
Query: 270 LRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASG 316
+ D+ RVF+ + + ++ SWN+++ GY N A + M+ G
Sbjct: 140 MVDSRRVFDGM-RRHDVVSWNSLISGYADNDQGEAALELFVPMELEG 185
>gi|302782183|ref|XP_002972865.1| hypothetical protein SELMODRAFT_51647 [Selaginella moellendorffii]
gi|300159466|gb|EFJ26086.1| hypothetical protein SELMODRAFT_51647 [Selaginella moellendorffii]
Length = 597
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 88/284 (30%), Positives = 143/284 (50%), Gaps = 15/284 (5%)
Query: 36 IRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQE 95
IR+R + T + N ++ M+ CG +D A +F + R+ SW ++I + +
Sbjct: 5 IRERGHGSSTYVS-NMIVQMYGKCGSVDDAWIVFSSIQARNVFSWNMIIAAFAQNGHPER 63
Query: 96 CITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLT 155
+ LF M++ + G + P I L A N+ G+++H L +G + ++
Sbjct: 64 SVALFWRMIREEPG----IIPTRI--TFLHALEKLKNLAEGRKIHELAITVGLESDPAVG 117
Query: 156 GSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIK 215
+++ YGK R L DA VF QLKR + V WTA I + GH + + + M + +
Sbjct: 118 TAIVTMYGKSRSLADAKRVFDQLKRRDVVAWTALITAYTQNGHCEEALDLYSSMDPDGVA 177
Query: 216 KNSYTFSSVLKAC---GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRD 272
N YTF+ V+ AC G +D G +HA I GLES V L+++YG C+ LRD
Sbjct: 178 PNQYTFTIVIDACAELGRLD----VGIAIHARITAAGLESWIEVANSLINLYGNCKRLRD 233
Query: 273 AERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASG 316
AER+F+ + + ++ SWN+M+ Y NG +A M+ G
Sbjct: 234 AERIFQRMPRRSSV-SWNSMIAAYAHNGHPGDAIDLYKRMRGDG 276
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/290 (24%), Positives = 125/290 (43%), Gaps = 15/290 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ ++ +C +L A ++F MP R SW MI Y + I L+ KR +G
Sbjct: 219 NSLINLYGNCKRLRDAERIFQRMPRRSSVSWNSMIAAYAHNGHPGDAIDLY----KRMRG 274
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ V VL AC ++ G+ +H G ++ L + ++ YG+ +E
Sbjct: 275 DGSVKLDPVTFVNVLGACYSQEDLAAGRSIHRDAIARGLGSHLVLASAAVSMYGRCGSVE 334
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEM-GRERIKKNSYTFSSVLKAC 228
++ F +++ + V W+A I + G + ++ M + N TF SVL+AC
Sbjct: 335 ESMATFERMEIKDGVAWSAVIAALAQNGESSSALHFYRRMIWSSSARPNEATFISVLEAC 394
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK---- 284
D+ G ++H +IV G+ + + +MY KC L A +F + +
Sbjct: 395 SFADE----GIKIHQHIVDSGIVHSTMISTAIFNMYAKCGRLDRAREIFSSMRASRGSFQ 450
Query: 285 --NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
N SW M+ R+G EA + M+ G + E + + CS
Sbjct: 451 SANDVSWMNMISALARHGSIDEALELFREMRLEGGKPSEIVFISILHGCS 500
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 93/198 (46%), Gaps = 7/198 (3%)
Query: 139 VHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGH 198
+H + + G + ++ ++ YGK ++DA VFS ++ N W I + GH
Sbjct: 1 LHCWIRERGHGSSTYVSNMIVQMYGKCGSVDDAWIVFSSIQARNVFSWNMIIAAFAQNGH 60
Query: 199 FHQVFNDFKEMGRER--IKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYV 256
+ F M RE I TF L+ + + GR++H + +GLESD V
Sbjct: 61 PERSVALFWRMIREEPGIIPTRITFLHALEKLKNLAE----GRKIHELAITVGLESDPAV 116
Query: 257 QCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASG 316
+V MYGK R L DA+RVF+ + ++++ +W A++ Y +NG EA M G
Sbjct: 117 GTAIVTMYGKSRSLADAKRVFDQL-KRRDVVAWTALITAYTQNGHCEEALDLYSSMDPDG 175
Query: 317 IQIQESLINDLRIACSSI 334
+ + + AC+ +
Sbjct: 176 VAPNQYTFTIVIDACAEL 193
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/229 (20%), Positives = 89/229 (38%), Gaps = 18/229 (7%)
Query: 7 PITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTAR 66
P+T + ++ C Q+D A + R + L+ + + M+ CG ++ +
Sbjct: 282 PVT---FVNVLGACYSQEDLAAGRSIHRDAIAR-GLGSHLVLASAAVSMYGRCGSVEESM 337
Query: 67 QLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKA 126
F+ M ++D +W+ +I + + + M+ + VL+A
Sbjct: 338 ATFERMEIKDGVAWSAVIAALAQNGESSSALHFYRRMIWSSSARPNEA----TFISVLEA 393
Query: 127 CVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH----- 181
C + G ++H + G + ++ ++ N Y K L+ A +FS ++
Sbjct: 394 CSFA---DEGIKIHQHIVDSGIVHSTMISTAIFNMYAKCGRLDRAREIFSSMRASRGSFQ 450
Query: 182 --NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
N V W I R G + F+EM E K + F S+L C
Sbjct: 451 SANDVSWMNMISALARHGSIDEALELFREMRLEGGKPSEIVFISILHGC 499
>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
Length = 820
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 93/300 (31%), Positives = 145/300 (48%), Gaps = 8/300 (2%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
Y L++ C KD A ++ HI R +KP + +N LL ++V CG ++ AR+LFD+
Sbjct: 47 YVKLLQSCVKAKDLAVGKQVHEHIL-RFGMKPNVYIINTLLKLYVHCGSVNEARRLFDKF 105
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN 132
+ SW VMI GY QE LF M + L + V +L AC
Sbjct: 106 SNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEG-----LEPDKFTFVSILSACSSPAA 160
Query: 133 MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192
+ G++VH + + G + N ++ +LI+ Y K + DA VF + + V WT
Sbjct: 161 LNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGA 220
Query: 193 NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLES 252
G+ + + M +E ++ + T+ +VL ACG + G+Q+HA IV+ S
Sbjct: 221 YAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEK-GKQIHAQIVESEHHS 279
Query: 253 DEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLM 312
D V L MY KC ++DA VFE + ++ IA WN M+ G + +G EA + M
Sbjct: 280 DVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIA-WNTMIGGLVDSGQLEEAHGMFHRM 338
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 84/281 (29%), Positives = 144/281 (51%), Gaps = 9/281 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L M++ CG + AR++F+ +P RD +W MI G VD +E +F M+K
Sbjct: 287 LTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKE----- 341
Query: 112 LLVFPAWII-VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
V P + + +L AC + GK++H K G ++ +LIN Y K ++D
Sbjct: 342 -CVAPDRVTYLAILSACARPGGLACGKEIHARAVKDGLVSDVRFGNALINMYSKAGSMKD 400
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
A VF ++ + + V WTA + G + F+ FK+M ++ ++ N T+ VLKAC
Sbjct: 401 ARQVFDRMPKRDVVSWTALVGGYADCGQVVESFSTFKKMLQQGVEANKITYMCVLKACSN 460
Query: 231 VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWN 290
G+++HA +VK G+ +D V L+ MY KC + DA RV E + +++ +WN
Sbjct: 461 -PVALKWGKEIHAEVVKAGIFADLAVANALMSMYFKCGSVEDAIRVSEGM-STRDVVTWN 518
Query: 291 AMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
++ G +NG +EA + +MK+ ++ + ++ AC
Sbjct: 519 TLIGGLAQNGRGLEALQKFEVMKSEEMRPNATTFVNVMSAC 559
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 84/293 (28%), Positives = 139/293 (47%), Gaps = 15/293 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ CG + AR++FD M RD SW + Y + QE + + M++
Sbjct: 184 NALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQEG-- 241
Query: 110 HMLLVFPAWII-VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
V P+ I + VL AC +E GKQ+H + + ++ ++ +L Y K +
Sbjct: 242 ----VRPSRITYMNVLSACGSLAALEKGKQIHAQIVESEHHSDVRVSTALTKMYIKCGAV 297
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+DA VF L + + W I G + F M +E + + T+ ++L AC
Sbjct: 298 KDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSAC 357
Query: 229 ---GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
GG+ CG+++HA VK GL SD L++MY K ++DA +VF+ + K++
Sbjct: 358 ARPGGL----ACGKEIHARAVKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRM-PKRD 412
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASK 338
+ SW A++ GY G VE+ M G++ + + ACS+ A K
Sbjct: 413 VVSWTALVGGYADCGQVVESFSTFKKMLQQGVEANKITYMCVLKACSNPVALK 465
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 121/249 (48%), Gaps = 7/249 (2%)
Query: 48 FLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRK 107
F N L+ M+ G + ARQ+FD MP RD SW ++ GY D E + F +M+++
Sbjct: 384 FGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTALVGGYADCGQVVESFSTFKKMLQQG 443
Query: 108 KGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
+ + +CVLKAC + ++ GK++H + K G ++++ +L++ Y K
Sbjct: 444 VEANKITY-----MCVLKACSNPVALKWGKEIHAEVVKAGIFADLAVANALMSMYFKCGS 498
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
+EDA V + + V W I + G + F+ M E ++ N+ TF +V+ A
Sbjct: 499 VEDAIRVSEGMSTRDVVTWNTLIGGLAQNGRGLEALQKFEVMKSEEMRPNATTFVNVMSA 558
Query: 228 CGGVDDDGNCGRQMHANIVK-IGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
C V + GR+ A++ K G+ E +VD+ + L +AE V + K +
Sbjct: 559 C-RVRNLVEEGRRQFASMRKDYGIVPTEKHYACMVDILARAGHLGEAEDVILTMPFKPSA 617
Query: 287 ASWNAMLVG 295
A W A+L
Sbjct: 618 AMWGALLAA 626
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 107/216 (49%), Gaps = 2/216 (0%)
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
V +L++CV ++ +GKQVH + + G N+ + +L+ Y + +A +F +
Sbjct: 48 VKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCGSVNEARRLFDKFSN 107
Query: 181 HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQ 240
+ V W I G + FN F M +E ++ + +TF S+L AC N GR+
Sbjct: 108 KSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACSS-PAALNWGRE 166
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
+H +++ GL ++ V L+ MY KC +RDA RVF+ + + + SW + Y +G
Sbjct: 167 VHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEV-SWTTLTGAYAESG 225
Query: 301 LYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
E+ K + M G++ ++ AC S++A
Sbjct: 226 YAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAA 261
>gi|147784524|emb|CAN61725.1| hypothetical protein VITISV_032420 [Vitis vinifera]
Length = 763
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 99/335 (29%), Positives = 159/335 (47%), Gaps = 13/335 (3%)
Query: 3 NLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQL 62
CL ++T Y LI C++ + ++ +H+ K + P L N +L M+ CG L
Sbjct: 58 GFCLTLST--YAYLISACSYLRSLEHGRKIHDHMLKSKS-HPDLTLQNHILNMYGKCGSL 114
Query: 63 DTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIV 121
A+++FD MP R+ SW +I GY + + +M++ V P +
Sbjct: 115 KDAQKVFDAMPERNVVSWTSVIAGYSQNGQGGNALEFYFQMLQSG------VMPDQFTFG 168
Query: 122 CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH 181
++KAC ++ LG+Q+H + K +I +LI+ Y K + DA VFS++
Sbjct: 169 SIIKACSSLGDIGLGRQLHAHVLKSEFGAHIIAQNALISMYTKSNVIIDALDVFSRMATR 228
Query: 182 NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIK-KNSYTFSSVLKACGGVDDDGNCGRQ 240
+ + W + I + G+ + FKEM + + N + F SV AC + GRQ
Sbjct: 229 DLISWGSMIAGFSQLGYELEALCYFKEMLHQGVYLPNEFIFGSVFSACSSLLQP-EYGRQ 287
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
+H +K GL D + C L DMY KC LL A VF I + ++ +WNA++ G+ G
Sbjct: 288 LHGMSIKFGLGRDVFAGCSLCDMYAKCGLLSCARVVFYQI-GRPDLVAWNAIIAGFAYGG 346
Query: 301 LYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
EA F M+ G+ E + L AC+S S
Sbjct: 347 DAKEAIAFFSQMRHQGLIPDEITVRSLLCACTSPS 381
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 91/308 (29%), Positives = 135/308 (43%), Gaps = 10/308 (3%)
Query: 8 ITTDMYT--CLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTA 65
+ D +T +IK C+ D +L H+ K ++ N L+ M+ + A
Sbjct: 160 VMPDQFTFGSIIKACSSLGDIGLGRQLHAHVLKS-EFGAHIIAQNALISMYTKSNVIIDA 218
Query: 66 RQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCVL 124
+F M RD SW MI G+ + E + F EM+ H + P +I V
Sbjct: 219 LDVFSRMATRDLISWGSMIAGFSQLGYELEALCYFKEML-----HQGVYLPNEFIFGSVF 273
Query: 125 KACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTV 184
AC + E G+Q+HG+ K G R++ SL + Y K L A VF Q+ R + V
Sbjct: 274 SACSSLLQPEYGRQLHGMSIKFGLGRDVFAGCSLCDMYAKCGLLSCARVVFYQIGRPDLV 333
Query: 185 VWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHAN 244
W A I G + F +M + + + T S+L AC + G Q+H
Sbjct: 334 AWNAIIAGFAYGGDAKEAIAFFSQMRHQGLIPDEITVRSLLCACTSPSELYQ-GMQVHGY 392
Query: 245 IVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVE 304
I K+GL+ D V L+ MY KC LRDA FE + ++ SWNA+L + + E
Sbjct: 393 INKMGLDLDVPVCNTLLTMYAKCSELRDAIFFFEEMRCNADLVSWNAILTACMHHDQAEE 452
Query: 305 ATKFLYLM 312
L LM
Sbjct: 453 VFGLLKLM 460
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 82/283 (28%), Positives = 136/283 (48%), Gaps = 12/283 (4%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+ CG L AR +F ++ D +W +I G+ D +E I F++M R +G +
Sbjct: 310 MYAKCGLLSCARVVFYQIGRPDLVAWNAIIAGFAYGGDAKEAIAFFSQM--RHQG----L 363
Query: 115 FPAWIIVCVLKACVCTMNMEL--GKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDAD 172
P I V L C CT EL G QVHG + K+G ++ + +L+ Y K L DA
Sbjct: 364 IPDEITVRSL-LCACTSPSELYQGMQVHGYINKMGLDLDVPVCNTLLTMYAKCSELRDAI 422
Query: 173 FVFSQLK-RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
F F +++ + V W A + +VF K M + + + T ++VL A
Sbjct: 423 FFFEEMRCNADLVSWNAILTACMHHDQAEEVFGLLKLMCISQHRPDYITLTNVLGASAET 482
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
G Q+H +K GL D V GL+D+Y KC L+ A ++F+ +++ ++ SW++
Sbjct: 483 VSI-EIGNQVHCYALKTGLNCDISVTNGLIDLYAKCGSLKTARKIFDSVINP-DVVSWSS 540
Query: 292 MLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
+++GY + G EA K M+ ++ + ACS +
Sbjct: 541 LILGYAQFGYGEEALKLFKTMRRLDVKPNHVTFVGVLTACSHV 583
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/244 (29%), Positives = 124/244 (50%), Gaps = 9/244 (3%)
Query: 93 YQECITLFAEMMKRKKGHML-LVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRN 151
+ E I F E +++K G L L A++I AC ++E G+++H + K S +
Sbjct: 43 FNEAIKAF-EFLQKKTGFCLTLSTYAYLI----SACSYLRSLEHGRKIHDHMLKSKSHPD 97
Query: 152 ISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGR 211
++L ++N YGK L+DA VF + N V WT+ I + G + +M +
Sbjct: 98 LTLQNHILNMYGKCGSLKDAQKVFDAMPERNVVSWTSVIAGYSQNGQGGNALEFYFQMLQ 157
Query: 212 ERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLR 271
+ + +TF S++KAC + D G GRQ+HA+++K + Q L+ MY K ++
Sbjct: 158 SGVMPDQFTFGSIIKACSSLGDIG-LGRQLHAHVLKSEFGAHIIAQNALISMYTKSNVII 216
Query: 272 DAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQ-ESLINDLRIA 330
DA VF + +++ SW +M+ G+ + G +EA + M G+ + E + + A
Sbjct: 217 DALDVFSRMA-TRDLISWGSMIAGFSQLGYELEALCYFKEMLHQGVYLPNEFIFGSVFSA 275
Query: 331 CSSI 334
CSS+
Sbjct: 276 CSSL 279
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 71/253 (28%), Positives = 115/253 (45%), Gaps = 18/253 (7%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLR-DFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
N LL M+ C +L A F+EM D SW ++ + +E L M +
Sbjct: 406 NTLLTMYAKCSELRDAIFFFEEMRCNADLVSWNAILTACMHHDQAEEVFGLLKLMCISQH 465
Query: 109 GHMLLVFPAWIIVC-VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
P +I + VL A T+++E+G QVH K G + +IS+T LI+ Y K
Sbjct: 466 R------PDYITLTNVLGASAETVSIEIGNQVHCYALKTGLNCDISVTNGLIDLYAKCGS 519
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
L+ A +F + + V W++ I+ + G+ + FK M R +K N TF VL A
Sbjct: 520 LKTARKIFDSVINPDVVSWSSLILGYAQFGYGEEALKLFKTMRRLDVKPNHVTFVGVLTA 579
Query: 228 C---GGVDDDGNCGRQMHANIVK-IGL-ESDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282
C G V++ G Q++ + K G+ + E+ C +VD+ + L +AE +
Sbjct: 580 CSHVGLVEE----GWQLYGTMEKEFGIVPTREHCSC-MVDLLARAGCLNEAEAFIHQMAF 634
Query: 283 KKNIASWNAMLVG 295
+I W +L
Sbjct: 635 DPDIVVWKTLLAA 647
>gi|15231798|ref|NP_190904.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174119|sp|Q9LFI1.1|PP280_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g53360, mitochondrial; Flags: Precursor
gi|6729487|emb|CAB67643.1| putative protein [Arabidopsis thaliana]
gi|332645554|gb|AEE79075.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 768
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 97/315 (30%), Positives = 150/315 (47%), Gaps = 9/315 (2%)
Query: 3 NLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQL 62
N I Y LI C+ + A ++ +HI N K + N +L M+ CG L
Sbjct: 60 NSSFKIRLRTYISLICACSSSRSLAQGRKIHDHILNS-NCKYDTILNNHILSMYGKCGSL 118
Query: 63 DTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVC 122
AR++FD MP R+ S+ +I GY E I L+ +M++ LV +
Sbjct: 119 RDAREVFDFMPERNLVSYTSVITGYSQNGQGAEAIRLYLKMLQED-----LVPDQFAFGS 173
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
++KAC + ++ LGKQ+H + KL SS ++ +LI Y +F + DA VF + +
Sbjct: 174 IIKACASSSDVGLGKQLHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASRVFYGIPMKD 233
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERI-KKNSYTFSSVLKACGGVDDDGNCGRQM 241
+ W++ I + G + + KEM + N Y F S LKAC + + G Q+
Sbjct: 234 LISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRP-DYGSQI 292
Query: 242 HANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGL 301
H +K L + C L DMY +C L A RVF+ I ++ + ASWN ++ G NG
Sbjct: 293 HGLCIKSELAGNAIAGCSLCDMYARCGFLNSARRVFDQI-ERPDTASWNVIIAGLANNGY 351
Query: 302 YVEATKFLYLMKASG 316
EA M++SG
Sbjct: 352 ADEAVSVFSQMRSSG 366
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/281 (26%), Positives = 138/281 (49%), Gaps = 8/281 (2%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+ CG L++AR++FD++ D SW V+I G + E +++F++M R G +
Sbjct: 314 MYARCGFLNSARRVFDQIERPDTASWNVIIAGLANNGYADEAVSVFSQM--RSSG---FI 368
Query: 115 FPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFV 174
A + +L A M + G Q+H + K G ++++ SL+ Y L +
Sbjct: 369 PDAISLRSLLCAQTKPMALSQGMQIHSYIIKWGFLADLTVCNSLLTMYTFCSDLYCCFNL 428
Query: 175 FSQLKRH-NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDD 233
F + + ++V W + + ++ FK M + + T ++L+ C +
Sbjct: 429 FEDFRNNADSVSWNTILTACLQHEQPVEMLRLFKLMLVSECEPDHITMGNLLRGCVEISS 488
Query: 234 DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
G Q+H +K GL +++++ GL+DMY KC L A R+F+ + D +++ SW+ ++
Sbjct: 489 -LKLGSQVHCYSLKTGLAPEQFIKNGLIDMYAKCGSLGQARRIFDSM-DNRDVVSWSTLI 546
Query: 294 VGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
VGY ++G EA MK++GI+ + ACS +
Sbjct: 547 VGYAQSGFGEEALILFKEMKSAGIEPNHVTFVGVLTACSHV 587
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 83/328 (25%), Positives = 141/328 (42%), Gaps = 8/328 (2%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
+ +IK C D +L + K + L+ N L+ M+V Q+ A ++F +
Sbjct: 171 FGSIIKACASSSDVGLGKQLHAQVIK-LESSSHLIAQNALIAMYVRFNQMSDASRVFYGI 229
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN 132
P++D SW+ +I G+ + E ++ EM+ H +I LKAC +
Sbjct: 230 PMKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHP----NEYIFGSSLKACSSLLR 285
Query: 133 MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192
+ G Q+HGL K + N SL + Y + L A VF Q++R +T W I
Sbjct: 286 PDYGSQIHGLCIKSELAGNAIAGCSLCDMYARCGFLNSARRVFDQIERPDTASWNVIIAG 345
Query: 193 NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDG-NCGRQMHANIVKIGLE 251
G+ + + F +M ++ + S+L C + G Q+H+ I+K G
Sbjct: 346 LANNGYADEAVSVFSQMRSSGFIPDAISLRSLL--CAQTKPMALSQGMQIHSYIIKWGFL 403
Query: 252 SDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYL 311
+D V L+ MY C L +FE + + SWN +L +++ VE + L
Sbjct: 404 ADLTVCNSLLTMYTFCSDLYCCFNLFEDFRNNADSVSWNTILTACLQHEQPVEMLRLFKL 463
Query: 312 MKASGIQIQESLINDLRIACSSISASKI 339
M S + + +L C IS+ K+
Sbjct: 464 MLVSECEPDHITMGNLLRGCVEISSLKL 491
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 105/215 (48%), Gaps = 3/215 (1%)
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
+ ++ AC + ++ G+++H + + L +++ YGK L DA VF +
Sbjct: 71 ISLICACSSSRSLAQGRKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFMPE 130
Query: 181 HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQ 240
N V +T+ I + G + + +M +E + + + F S++KAC D G G+Q
Sbjct: 131 RNLVSYTSVITGYSQNGQGAEAIRLYLKMLQEDLVPDQFAFGSIIKACASSSDVG-LGKQ 189
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
+HA ++K+ S Q L+ MY + + DA RVF I K++ SW++++ G+ + G
Sbjct: 190 LHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASRVFYGI-PMKDLISWSSIIAGFSQLG 248
Query: 301 LYVEATKFLYLMKASGI-QIQESLINDLRIACSSI 334
EA L M + G+ E + ACSS+
Sbjct: 249 FEFEALSHLKEMLSFGVFHPNEYIFGSSLKACSSL 283
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 111/251 (44%), Gaps = 18/251 (7%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLR-DFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
N LL M+ C L LF++ D SW ++ + E + LF M+ +
Sbjct: 410 NSLLTMYTFCSDLYCCFNLFEDFRNNADSVSWNTILTACLQHEQPVEMLRLFKLMLVSE- 468
Query: 109 GHMLLVFPAWIIVC-VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
P I + +L+ CV +++LG QVH K G + + LI+ Y K
Sbjct: 469 -----CEPDHITMGNLLRGCVEISSLKLGSQVHCYSLKTGLAPEQFIKNGLIDMYAKCGS 523
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
L A +F + + V W+ IV + G + FKEM I+ N TF VL A
Sbjct: 524 LGQARRIFDSMDNRDVVSWSTLIVGYAQSGFGEEALILFKEMKSAGIEPNHVTFVGVLTA 583
Query: 228 C---GGVDDDGNCGRQMHANI-VKIGL-ESDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282
C G V++ G +++A + + G+ + E+ C +VD+ + L +AER + +
Sbjct: 584 CSHVGLVEE----GLKLYATMQTEHGISPTKEHCSC-VVDLLARAGRLNEAERFIDEMKL 638
Query: 283 KKNIASWNAML 293
+ ++ W +L
Sbjct: 639 EPDVVVWKTLL 649
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 74/164 (45%), Gaps = 7/164 (4%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
+ + P N L+ M+ CG L AR++FD M RD SW+ +IVGY +E +
Sbjct: 501 KTGLAPEQFIKNGLIDMYAKCGSLGQARRIFDSMDNRDVVSWSTLIVGYAQSGFGEEALI 560
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLL-FKLGSSRNISLTGS 157
LF EM + F V VL AC +E G +++ + + G S
Sbjct: 561 LFKEMKSAGIEPNHVTF-----VGVLTACSHVGLVEEGLKLYATMQTEHGISPTKEHCSC 615
Query: 158 LINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCR-EGHFH 200
+++ + L +A+ ++K VV +++ C+ +G+ H
Sbjct: 616 VVDLLARAGRLNEAERFIDEMKLEPDVVVWKTLLSACKTQGNVH 659
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 59/107 (55%), Gaps = 8/107 (7%)
Query: 220 TFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFEL 279
T+ S++ AC GR++H +I+ + D + ++ MYGKC LRDA VF+
Sbjct: 69 TYISLICACSSSRSLAQ-GRKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDF 127
Query: 280 IVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLIND 326
+ ++ N+ S+ +++ GY +NG EA + LYL +QE L+ D
Sbjct: 128 MPER-NLVSYTSVITGYSQNGQGAEAIR-LYLK-----MLQEDLVPD 167
>gi|15235472|ref|NP_195434.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75097747|sp|O23169.1|PP353_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g37170
gi|2464864|emb|CAB16758.1| putative protein [Arabidopsis thaliana]
gi|7270666|emb|CAB80383.1| putative protein [Arabidopsis thaliana]
gi|332661361|gb|AEE86761.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 691
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 98/353 (27%), Positives = 170/353 (48%), Gaps = 32/353 (9%)
Query: 7 PITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTAR 66
P +T Y LI+ C+ + ++ HIR P ++ NRLL M+ CG L AR
Sbjct: 84 PAST--YCNLIQVCSQTRALEEGKKVHEHIRTS-GFVPGIVIWNRLLRMYAKCGSLVDAR 140
Query: 67 QLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR----------------KKGH 110
++FDEMP RD SW VM+ GY +V +E LF EM ++ +
Sbjct: 141 KVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDEMTEKDSYSWTAMVTGYVKKDQPEE 200
Query: 111 MLLVFPAWIIVCVLKACVCTMNMEL-----------GKQVHGLLFKLGSSRNISLTGSLI 159
L+++ V + + T+++ + GK++HG + + G + L SL+
Sbjct: 201 ALVLYSLMQRVPNSRPNIFTVSIAVAAAAAVKCIRRGKEIHGHIVRAGLDSDEVLWSSLM 260
Query: 160 NFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSY 219
+ YGK C+++A +F ++ + V WT+ I + + + F+ F E+ + N Y
Sbjct: 261 DMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSRWREGFSLFSELVGSCERPNEY 320
Query: 220 TFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFEL 279
TF+ VL AC + + G+Q+H + ++G + + LVDMY KC + A+ V +
Sbjct: 321 TFAGVLNACADLTTE-ELGKQVHGYMTRVGFDPYSFASSSLVDMYTKCGNIESAKHVVDG 379
Query: 280 IVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
K ++ SW +++ G +NG EA K+ L+ SG + ++ AC+
Sbjct: 380 -CPKPDLVSWTSLIGGCAQNGQPDEALKYFDLLLKSGTKPDHVTFVNVLSACT 431
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 75/279 (26%), Positives = 119/279 (42%), Gaps = 34/279 (12%)
Query: 31 ELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDV 90
E+ HI R + + + L+ M+ CG +D AR +FD++ +D SW MI Y
Sbjct: 239 EIHGHI-VRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFKS 297
Query: 91 ADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSR 150
+ ++E +LF+E++ + F VL AC ELGKQVHG + ++G
Sbjct: 298 SRWREGFSLFSELVGSCERPNEYTFAG-----VLNACADLTTEELGKQVHGYMTRVGFDP 352
Query: 151 NISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMG 210
+ SL++ Y K +E A V + + V WT+ I + G + F +
Sbjct: 353 YSFASSSLVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEALKYFDLLL 412
Query: 211 RERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLE--------------SDEYV 256
+ K + TF +VL AC HA +V+ GLE SD Y
Sbjct: 413 KSGTKPDHVTFVNVLSAC------------THAGLVEKGLEFFYSITEKHRLSHTSDHYT 460
Query: 257 QCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
C LVD+ + + V + K + W ++L G
Sbjct: 461 -C-LVDLLARSGRFEQLKSVISEMPMKPSKFLWASVLGG 497
Score = 45.1 bits (105), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 3/101 (2%)
Query: 209 MGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCR 268
+GR + K + T+ ++++ C G+++H +I G + L+ MY KC
Sbjct: 77 LGRAK-KPPASTYCNLIQVCSQTRALEE-GKKVHEHIRTSGFVPGIVIWNRLLRMYAKCG 134
Query: 269 LLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFL 309
L DA +VF+ + + +++ SWN M+ GY GL EA K
Sbjct: 135 SLVDARKVFDEMPN-RDLCSWNVMVNGYAEVGLLEEARKLF 174
>gi|357131819|ref|XP_003567531.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g39530-like [Brachypodium distachyon]
Length = 822
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 89/306 (29%), Positives = 146/306 (47%), Gaps = 8/306 (2%)
Query: 33 LNHIRKRVNIK-PTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVA 91
L H R V P L N LL + G++ AR+LFD MP ++ SW I +
Sbjct: 32 LAHARAVVTGALPDLFLANLLLRAYSKLGRVRDARRLFDRMPHKNLVSWGSAISMHAQHG 91
Query: 92 DYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRN 151
++ + LFA + G F ++ L+AC + + G+QVHG+ ++G N
Sbjct: 92 CEEDAVALFAAFQRASGGEAPNEF---LLASALRACAQSRAVSFGQQVHGVAVRIGLDGN 148
Query: 152 ISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGR 211
+ + +LIN Y K C++ A VF L N V WTA I + G F +MG
Sbjct: 149 VYVGTALINLYAKVGCIDAAMLVFDALPVKNPVTWTAVITGYSQIGQGGVALELFGKMGL 208
Query: 212 ERIKKNSYTFSSVLKACGGVDD-DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLL 270
+ ++ + + +S + AC + +G GRQ H +I +E+D V L+D+Y KC L
Sbjct: 209 DGVRPDRFVLASAVSACSALGFLEG--GRQTHGYAYRIAVETDASVINALIDLYCKCSRL 266
Query: 271 RDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIA 330
A ++F+ + + +N+ SW M+ GY++N EA + + G Q + +
Sbjct: 267 SLARKLFDCM-ENRNLVSWTTMIAGYMQNSCDAEAMAMFWQLSQEGWQPDVFACASILNS 325
Query: 331 CSSISA 336
C S++A
Sbjct: 326 CGSLAA 331
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 80/280 (28%), Positives = 137/280 (48%), Gaps = 7/280 (2%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
+ N++ N L+ M+ C L AR +F+ + D S+ MI GY + D I
Sbjct: 344 KANLESDEYVKNSLIDMYAKCEHLTEARAVFEALAEDDAISYNAMIEGYSRLGDLAGAID 403
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
+F++M L F V +L +EL KQ+HGL+ K G+S ++ SL
Sbjct: 404 VFSKMRYCSLKPSPLTF-----VSLLGVSSSQSAIELSKQIHGLIVKSGTSLDLYAGSSL 458
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
I+ Y KF +EDA VF+ + + V+W A I + + F ++ + N
Sbjct: 459 IDVYSKFSLVEDAKAVFNLMHNRDMVIWNAMIFGLAQNEQGEEAVKLFNQLQVSGLAPNE 518
Query: 219 YTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE 278
+TF +++ + + G+Q HA I+K G +SD +V L+DMY KC +++ +FE
Sbjct: 519 FTFVALVTVASTLVSMFH-GQQFHAQIIKAGADSDHHVSNALIDMYAKCGFIKEGRLLFE 577
Query: 279 LIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
+ K++ WN+M+ Y ++G EA +M +G++
Sbjct: 578 STLG-KDVICWNSMISTYAQHGQAEEALYVFRMMGGTGVE 616
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 76/263 (28%), Positives = 131/263 (49%), Gaps = 9/263 (3%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R+ + + L+ ++ G +D A +FD +P+++ +W +I GY + +
Sbjct: 142 RIGLDGNVYVGTALINLYAKVGCIDAAMLVFDALPVKNPVTWTAVITGYSQIGQGGVALE 201
Query: 99 LFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGS 157
LF +M V P +++ + AC +E G+Q HG +++ + S+ +
Sbjct: 202 LFGKMGLDG------VRPDRFVLASAVSACSALGFLEGGRQTHGYAYRIAVETDASVINA 255
Query: 158 LINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKN 217
LI+ Y K L A +F ++ N V WT I + + F ++ +E + +
Sbjct: 256 LIDLYCKCSRLSLARKLFDCMENRNLVSWTTMIAGYMQNSCDAEAMAMFWQLSQEGWQPD 315
Query: 218 SYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVF 277
+ +S+L +CG + GRQ+HA+ +K LESDEYV+ L+DMY KC L +A VF
Sbjct: 316 VFACASILNSCGSLAAIWQ-GRQVHAHAIKANLESDEYVKNSLIDMYAKCEHLTEARAVF 374
Query: 278 ELIVDKKNIASWNAMLVGYIRNG 300
E + + I S+NAM+ GY R G
Sbjct: 375 EALAEDDAI-SYNAMIEGYSRLG 396
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/286 (29%), Positives = 133/286 (46%), Gaps = 13/286 (4%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R+ ++ +N L+ ++ C +L AR+LFD M R+ SW MI GY+ + E +
Sbjct: 243 RIAVETDASVINALIDLYCKCSRLSLARKLFDCMENRNLVSWTTMIAGYMQNSCDAEAMA 302
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
+F ++ ++G VF +L +C + G+QVH K + + SL
Sbjct: 303 MFWQL--SQEGWQPDVFAC---ASILNSCGSLAAIWQGRQVHAHAIKANLESDEYVKNSL 357
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
I+ Y K L +A VF L + + + A I R G + F +M +K +
Sbjct: 358 IDMYAKCEHLTEARAVFEALAEDDAISYNAMIEGYSRLGDLAGAIDVFSKMRYCSLKPSP 417
Query: 219 YTFSSVLKACGGVDDDGNC---GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAER 275
TF S+L GV + +Q+H IVK G D Y L+D+Y K L+ DA+
Sbjct: 418 LTFVSLL----GVSSSQSAIELSKQIHGLIVKSGTSLDLYAGSSLIDVYSKFSLVEDAKA 473
Query: 276 VFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQE 321
VF L+ +++ WNAM+ G +N EA K ++ SG+ E
Sbjct: 474 VFNLM-HNRDMVIWNAMIFGLAQNEQGEEAVKLFNQLQVSGLAPNE 518
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 98/234 (41%), Gaps = 9/234 (3%)
Query: 62 LDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIV 121
++ A+ +F+ M RD W MI G +E + LF ++ F A + V
Sbjct: 468 VEDAKAVFNLMHNRDMVIWNAMIFGLAQNEQGEEAVKLFNQLQVSGLAPNEFTFVALVTV 527
Query: 122 CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH 181
++M G+Q H + K G+ + ++ +LI+ Y K +++ +F
Sbjct: 528 AS-----TLVSMFHGQQFHAQIIKAGADSDHHVSNALIDMYAKCGFIKEGRLLFESTLGK 582
Query: 182 NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--GGVDDDGNCGR 239
+ + W + I + G + F+ MG ++ N TF VL AC G+ D+G R
Sbjct: 583 DVICWNSMISTYAQHGQAEEALYVFRMMGGTGVEPNYVTFVGVLSACAHAGLVDEGL--R 640
Query: 240 QMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
K +E +V+++G+ L A+ E + + A W ++L
Sbjct: 641 HFDFMKTKYAIEPGTEHYASVVNLFGRSGKLHAAKEFIERMPIEPAAAVWRSLL 694
>gi|168032055|ref|XP_001768535.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162680248|gb|EDQ66686.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 505
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 88/288 (30%), Positives = 146/288 (50%), Gaps = 11/288 (3%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
Y CL++ CT KD A + H+ K + PT LN L+ M++ CG L ARQ+FD M
Sbjct: 52 YVCLLRRCTHMKDLAEGKYVHAHMAKS-DFVPTTFVLNALVNMYMKCGSLVDARQVFDRM 110
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN 132
RD ++ +M+ GY + ++ ++ +M K + + F +L C +
Sbjct: 111 VERDMFTYTMMLTGYAKLGYPEDAYKMYEQMQKERVPVDRITF-----TTILNVCSTLRS 165
Query: 133 MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192
+E G +VH + + G +I L +LI+ Y K L+ A VF ++ + V W +
Sbjct: 166 LEKGMKVHQDMVRGGIRPDIILGNTLIDMYAKCGNLKQAHRVFKEMDNRDIVTWNIMVGG 225
Query: 193 NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLES 252
R G+F + F FK M E K + T+ S+L AC ++ G +H+ I+K G E
Sbjct: 226 AARNGYFDEAFEFFKAMLDEGQKPDKVTYISILNACTSLEQ----GTLLHSVIMKAGFEL 281
Query: 253 DEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
D V LV+M+ KC + DA +VF+ + ++N+ SW +++ Y + G
Sbjct: 282 DVRVGTALVNMFSKCGSVVDALKVFQKL-PQRNVVSWTSVISAYAQAG 328
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 79/331 (23%), Positives = 160/331 (48%), Gaps = 11/331 (3%)
Query: 6 LPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTA 65
+P+ +T ++ C+ + ++ + R I+P ++ N L+ M+ CG L A
Sbjct: 146 VPVDRITFTTILNVCSTLRSLEKGMKVHQDM-VRGGIRPDIILGNTLIDMYAKCGNLKQA 204
Query: 66 RQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLK 125
++F EM RD +W +M+ G + E F M+ + + + + +L
Sbjct: 205 HRVFKEMDNRDIVTWNIMVGGAARNGYFDEAFEFFKAMLDEGQKPDKVTY-----ISILN 259
Query: 126 ACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVV 185
AC ++E G +H ++ K G ++ + +L+N + K + DA VF +L + N V
Sbjct: 260 ACT---SLEQGTLLHSVIMKAGFELDVRVGTALVNMFSKCGSVVDALKVFQKLPQRNVVS 316
Query: 186 WTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANI 245
WT+ I + G + + +M E + + ++++L C + D G+ +H +I
Sbjct: 317 WTSVISAYAQAGEPERALECYAKMLNEGMVADKRAYTTILNVCAMLGDIEK-GKAVHGHI 375
Query: 246 VKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEA 305
V+ G+ +D + GL+DMY KC L+DA R+F+ + + +++ SW ++ G++++ Y EA
Sbjct: 376 VQSGIATDIITENGLIDMYVKCGRLKDAYRLFQDM-NVRDVVSWTTLIEGWVQHRQYQEA 434
Query: 306 TKFLYLMKASGIQIQESLINDLRIACSSISA 336
M+ G+ + AC+ + +
Sbjct: 435 LDTFNDMQLEGVMPNTVTFLGVLKACAGMGS 465
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 106/216 (49%), Gaps = 6/216 (2%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M CG + A ++F ++P R+ SW +I Y + + + +A+M+
Sbjct: 289 LVNMFSKCGSVVDALKVFQKLPQRNVVSWTSVISAYAQAGEPERALECYAKMLNEG---- 344
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+V +L C ++E GK VHG + + G + +I LI+ Y K L+DA
Sbjct: 345 -MVADKRAYTTILNVCAMLGDIEKGKAVHGHIVQSGIATDIITENGLIDMYVKCGRLKDA 403
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
+F + + V WT I + + + + F +M E + N+ TF VLKAC G+
Sbjct: 404 YRLFQDMNVRDVVSWTTLIEGWVQHRQYQEALDTFNDMQLEGVMPNTVTFLGVLKACAGM 463
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKC 267
+ G+++HA IV+ GL + +++ L DMY KC
Sbjct: 464 GSLVD-GKRIHARIVEAGLAENAHIRHALADMYAKC 498
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 111/223 (49%), Gaps = 2/223 (0%)
Query: 117 AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFS 176
++ VC+L+ C ++ GK VH + K + +L+N Y K L DA VF
Sbjct: 49 SYAYVCLLRRCTHMKDLAEGKYVHAHMAKSDFVPTTFVLNALVNMYMKCGSLVDARQVFD 108
Query: 177 QLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGN 236
++ + +T + + G+ + +++M +ER+ + TF+++L C +
Sbjct: 109 RMVERDMFTYTMMLTGYAKLGYPEDAYKMYEQMQKERVPVDRITFTTILNVCSTLRSLEK 168
Query: 237 CGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGY 296
G ++H ++V+ G+ D + L+DMY KC L+ A RVF+ + D ++I +WN M+ G
Sbjct: 169 -GMKVHQDMVRGGIRPDIILGNTLIDMYAKCGNLKQAHRVFKEM-DNRDIVTWNIMVGGA 226
Query: 297 IRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKI 339
RNG + EA +F M G + + + AC+S+ +
Sbjct: 227 ARNGYFDEAFEFFKAMLDEGQKPDKVTYISILNACTSLEQGTL 269
>gi|296089060|emb|CBI38763.3| unnamed protein product [Vitis vinifera]
Length = 719
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 90/282 (31%), Positives = 147/282 (52%), Gaps = 12/282 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N ++ + + G+L+ AR+LF E P+R +W+ +I GY E + LF EM +
Sbjct: 76 NTMIGAYANSGRLNEARKLFYETPIRSCITWSSLISGYCRYGCDVEALELFWEMQYEGER 135
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ + VL+ C + +E GKQ+H K N + L++ Y K +C+
Sbjct: 136 PNQFTWGS-----VLRVCSMYVLLEKGKQIHAHAIKTQFDSNAFVVTGLVDMYAKCKCIL 190
Query: 170 DADFVFS-QLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+A+++F + N V+WTA + + G H+ F++M E I+ N +TF S+L AC
Sbjct: 191 EAEYLFELAPDKRNHVLWTAMVTGYSQNGDGHKAIECFRDMRGEGIECNQFTFPSILTAC 250
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
G + G G Q+H IV+ G ++ +V LVDMY KC L +A R+ E + + + S
Sbjct: 251 GSISACG-FGAQVHGCIVRSGFGANVFVGSALVDMYSKCGDLSNARRMLETM-EVDDPVS 308
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQE----SLIND 326
WN+M+VG +R GL EA +M ++I E SL+N+
Sbjct: 309 WNSMIVGCVRQGLGEEALSLFRIMHLRHMKIDEFTYPSLVNN 350
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 100/194 (51%), Gaps = 1/194 (0%)
Query: 143 LFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQV 202
LF + R+ ++I Y L +A +F + + + W++ I CR G +
Sbjct: 63 LFDVMPDRDECSWNTMIGAYANSGRLNEARKLFYETPIRSCITWSSLISGYCRYGCDVEA 122
Query: 203 FNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVD 262
F EM E + N +T+ SVL+ C + G+Q+HA+ +K +S+ +V GLVD
Sbjct: 123 LELFWEMQYEGERPNQFTWGSVLRVCS-MYVLLEKGKQIHAHAIKTQFDSNAFVVTGLVD 181
Query: 263 MYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQES 322
MY KC+ + +AE +FEL DK+N W AM+ GY +NG +A + M+ GI+ +
Sbjct: 182 MYAKCKCILEAEYLFELAPDKRNHVLWTAMVTGYSQNGDGHKAIECFRDMRGEGIECNQF 241
Query: 323 LINDLRIACSSISA 336
+ AC SISA
Sbjct: 242 TFPSILTACGSISA 255
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 69/274 (25%), Positives = 112/274 (40%), Gaps = 38/274 (13%)
Query: 52 LLLMHVSCGQLDTARQLFDEMP-LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGH 110
L+ M+ C + A LF+ P R+ W M+ GY D + I F +M
Sbjct: 179 LVDMYAKCKCILEAEYLFELAPDKRNHVLWTAMVTGYSQNGDGHKAIECFRDMRGEGIEC 238
Query: 111 MLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
FP+ +L AC G QVHG + + G N+ + +L++ Y K L +
Sbjct: 239 NQFTFPS-----ILTACGSISACGFGAQVHGCIVRSGFGANVFVGSALVDMYSKCGDLSN 293
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
A + ++ + V W + IV R+G + + F+ M +K + +T+ S+
Sbjct: 294 ARRMLETMEVDDPVSWNSMIVGCVRQGLGEEALSLFRIMHLRHMKIDEFTYPSL------ 347
Query: 231 VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWN 290
V LVDMY K A VFE + DK ++ SW
Sbjct: 348 -------------------------VNNALVDMYAKRGYFDYAFDVFEKMTDK-DVISWT 381
Query: 291 AMLVGYIRNGLYVEATKFLYLMKASGIQIQESLI 324
+++ G + NG Y EA + M+ GI + +I
Sbjct: 382 SLVTGCVHNGSYEEALRLFCEMRIMGIHPDQIVI 415
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 73/292 (25%), Positives = 123/292 (42%), Gaps = 49/292 (16%)
Query: 33 LNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVAD 92
L H++ P+L+ N L+ M+ G D A +F++M +D SW ++ G V
Sbjct: 334 LRHMKIDEFTYPSLVN-NALVDMYAKRGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGS 392
Query: 93 YQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNI 152
Y+E + LF EM ++ + P I++ + +
Sbjct: 393 YEEALRLFCEM------RIMGIHPDQIVIAAVLS-------------------------- 420
Query: 153 SLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRE 212
+L SL++ Y K C+EDA+ VF ++ + + WTA IV + G F +E+
Sbjct: 421 ALDNSLVSMYAKCGCIEDANKVFDSMEIQDVITWTALIVGYAQNGRGRDYFQSMEEVYGI 480
Query: 213 RIKKNSYTFSSVLKACGGVDDDGNCGRQMHAN--IVKIGLESDEYVQCGLVD---MYGKC 267
+ Y AC +D G G+ M A + ++ ++ D V L+ ++G
Sbjct: 481 KPGPEHY-------AC-MIDLLGRSGKLMEAKELLNQMAVQPDATVWKALLAACRVHGNV 532
Query: 268 RL-LRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
L R A +FEL + KN + + Y G + EA K LMK G+
Sbjct: 533 ELGERAANNLFEL--EPKNAVPYVLLSNLYSAAGKWEEAAKTRRLMKLRGVS 582
>gi|255541480|ref|XP_002511804.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548984|gb|EEF50473.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 607
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 85/275 (30%), Positives = 141/275 (51%), Gaps = 12/275 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMM--KRK 107
N ++ + + G+L A+QLF E PL+ +W+ +I G+ E L+ +M ++
Sbjct: 57 NTMIAAYANSGRLTDAKQLFCEAPLKSSITWSSLISGFCKYEFDIEAFELYLQMQFEGQR 116
Query: 108 KGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
H + + +L+ C T ++ G+++HG K N+ + SL++ Y K C
Sbjct: 117 PNH-------YTLGSILRLCSRTGFLQKGERIHGYAIKTRLDANVFVVTSLVDLYAKCEC 169
Query: 168 LEDADFVFSQLK-RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
+ +A+++F + N WTA + G + F++M E ++ N +TF S+L
Sbjct: 170 ISEAEYIFEMVADSKNHATWTAMLTGYSHNGDGFRAIKCFRDMRAEGVESNQFTFPSILT 229
Query: 227 ACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
ACG V D G Q+H IV+ G ++ +VQ LVDMY KCR L A RV E + + ++
Sbjct: 230 ACGAVSDH-VFGVQVHGCIVRSGFGANIFVQSALVDMYAKCRDLNSANRVLENM-EVNDV 287
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQE 321
SWN+M+VG +R G EA M A I+I +
Sbjct: 288 VSWNSMIVGCVREGFEAEALSLFNEMHARDIKIDD 322
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/301 (26%), Positives = 139/301 (46%), Gaps = 8/301 (2%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMP-LRDFNSWAVMIVGYVDVADYQECI 97
+ + + + L+ ++ C + A +F+ + ++ +W M+ GY D I
Sbjct: 147 KTRLDANVFVVTSLVDLYAKCECISEAEYIFEMVADSKNHATWTAMLTGYSHNGDGFRAI 206
Query: 98 TLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGS 157
F +M FP+ +L AC + G QVHG + + G NI + +
Sbjct: 207 KCFRDMRAEGVESNQFTFPS-----ILTACGAVSDHVFGVQVHGCIVRSGFGANIFVQSA 261
Query: 158 LINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKN 217
L++ Y K R L A+ V ++ ++ V W + IV REG + + F EM IK +
Sbjct: 262 LVDMYAKCRDLNSANRVLENMEVNDVVSWNSMIVGCVREGFEAEALSLFNEMHARDIKID 321
Query: 218 SYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVF 277
YT+ SVL + + D + H I+K G + V LVDMY K L A VF
Sbjct: 322 DYTYPSVLNSFASMKDI-QSAKSAHCLIIKTGFGAYTLVNNALVDMYAKQGNLDYAFTVF 380
Query: 278 ELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISAS 337
+ D K++ SW +++ GY NG Y +A K M+ +G+ + ++ + AC+ ++ +
Sbjct: 381 NQMPD-KDVVSWTSLVTGYSYNGSYEDAIKLFCDMRIAGVCPDQIVLASVLSACAELTVT 439
Query: 338 K 338
+
Sbjct: 440 E 440
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 83/294 (28%), Positives = 135/294 (45%), Gaps = 7/294 (2%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R + + L+ M+ C L++A ++ + M + D SW MIVG V E ++
Sbjct: 249 RSGFGANIFVQSALVDMYAKCRDLNSANRVLENMEVNDVVSWNSMIVGCVREGFEAEALS 308
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
LF EM R +P+ VL + +++ K H L+ K G + +L
Sbjct: 309 LFNEMHARDIKIDDYTYPS-----VLNSFASMKDIQSAKSAHCLIIKTGFGAYTLVNNAL 363
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
++ Y K L+ A VF+Q+ + V WT+ + G + F +M + +
Sbjct: 364 VDMYAKQGNLDYAFTVFNQMPDKDVVSWTSLVTGYSYNGSYEDAIKLFCDMRIAGVCPDQ 423
Query: 219 YTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE 278
+SVL AC + G+Q+HA I+K GL S + LV MY KC + DA VF+
Sbjct: 424 IVLASVLSACAELTVT-EFGQQVHATILKSGLCSSLSIDNSLVTMYAKCGGIEDANYVFD 482
Query: 279 LIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+ +++ SW A++VGY +NG ++ F M A+G + L ACS
Sbjct: 483 SM-QIRDVISWTALIVGYAQNGRGKDSLHFYDQMIATGTKPDFITFIGLLFACS 535
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 107/228 (46%), Gaps = 24/228 (10%)
Query: 11 DMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFD 70
D+ + C K GA+ L+N N L+ M+ G LD A +F+
Sbjct: 337 DIQSAKSAHCLIIKTGFGAYTLVN---------------NALVDMYAKQGNLDYAFTVFN 381
Query: 71 EMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVC-VLKACVC 129
+MP +D SW ++ GY Y++ I LF +M R G V P I++ VL AC
Sbjct: 382 QMPDKDVVSWTSLVTGYSYNGSYEDAIKLFCDM--RIAG----VCPDQIVLASVLSACAE 435
Query: 130 TMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAK 189
E G+QVH + K G ++S+ SL+ Y K +EDA++VF ++ + + WTA
Sbjct: 436 LTVTEFGQQVHATILKSGLCSSLSIDNSLVTMYAKCGGIEDANYVFDSMQIRDVISWTAL 495
Query: 190 IVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG--GVDDDG 235
IV + G + + +M K + TF +L AC G+ +DG
Sbjct: 496 IVGYAQNGRGKDSLHFYDQMIATGTKPDFITFIGLLFACSHTGLVEDG 543
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 91/181 (50%), Gaps = 5/181 (2%)
Query: 157 SLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKK 216
++I Y L DA +F + +++ W++ I C+ + F + +M E +
Sbjct: 58 TMIAAYANSGRLTDAKQLFCEAPLKSSITWSSLISGFCKYEFDIEAFELYLQMQFEGQRP 117
Query: 217 NSYTFSSVLKACGGVDDDG--NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAE 274
N YT S+L+ C G G ++H +K L+++ +V LVD+Y KC + +AE
Sbjct: 118 NHYTLGSILRLCSRT---GFLQKGERIHGYAIKTRLDANVFVVTSLVDLYAKCECISEAE 174
Query: 275 RVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
+FE++ D KN A+W AML GY NG A K M+A G++ + + AC ++
Sbjct: 175 YIFEMVADSKNHATWTAMLTGYSHNGDGFRAIKCFRDMRAEGVESNQFTFPSILTACGAV 234
Query: 335 S 335
S
Sbjct: 235 S 235
>gi|356529928|ref|XP_003533538.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
chloroplastic-like [Glycine max]
Length = 690
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 91/305 (29%), Positives = 147/305 (48%), Gaps = 8/305 (2%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
Y L+ C + G + N++ +P L +NR+L +HV CG + AR+LFDEM
Sbjct: 120 YDALVSACVGLRSIRGVKRVFNYMVNS-GFEPDLYVMNRVLFVHVKCGLMLDARKLFDEM 178
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN 132
P +D SW MI G+VD ++ E LF M + F +++A
Sbjct: 179 PEKDMASWMTMIGGFVDSGNFSEAFGLFLCMWEEFNDGRSRTF-----TTMIRASAGLGL 233
Query: 133 MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192
+++G+Q+H K G + ++ +LI+ Y K +EDA VF Q+ TV W + I +
Sbjct: 234 VQVGRQIHSCALKRGVGDDTFVSCALIDMYSKCGSIEDAHCVFDQMPEKTTVGWNSIIAS 293
Query: 193 NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLES 252
G+ + + + EM K + +T S V++ C + +Q HA +V+ G ++
Sbjct: 294 YALHGYSEEALSFYYEMRDSGAKIDHFTISIVIRICARLASL-EYAKQAHAALVRRGYDT 352
Query: 253 DEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLM 312
D LVD Y K + DA VF + +KN+ SWNA++ GY +G EA + M
Sbjct: 353 DIVANTALVDFYSKWGRMEDAWHVFNRM-RRKNVISWNALIAGYGNHGQGEEAVEMFEQM 411
Query: 313 KASGI 317
G+
Sbjct: 412 LREGM 416
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 92/186 (49%), Gaps = 7/186 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ CG ++ A +FD+MP + W +I Y +E ++ + EM R G
Sbjct: 259 LIDMYSKCGSIEDAHCVFDQMPEKTTVGWNSIIASYALHGYSEEALSFYYEM--RDSGAK 316
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+ F I V++ C ++E KQ H L + G +I +L++FY K+ +EDA
Sbjct: 317 IDHF---TISIVIRICARLASLEYAKQAHAALVRRGYDTDIVANTALVDFYSKWGRMEDA 373
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--G 229
VF++++R N + W A I G + F++M RE + N TF +VL AC
Sbjct: 374 WHVFNRMRRKNVISWNALIAGYGNHGQGEEAVEMFEQMLREGMIPNHVTFLAVLSACSYS 433
Query: 230 GVDDDG 235
G+ + G
Sbjct: 434 GLSERG 439
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 105/214 (49%), Gaps = 2/214 (0%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
++ ACV ++ K+V + G ++ + ++ + K + DA +F ++ +
Sbjct: 123 LVSACVGLRSIRGVKRVFNYMVNSGFEPDLYVMNRVLFVHVKCGLMLDARKLFDEMPEKD 182
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
W I G+F + F F M E S TF+++++A G+ GRQ+H
Sbjct: 183 MASWMTMIGGFVDSGNFSEAFGLFLCMWEEFNDGRSRTFTTMIRASAGLGLV-QVGRQIH 241
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
+ +K G+ D +V C L+DMY KC + DA VF+ + +K + WN+++ Y +G
Sbjct: 242 SCALKRGVGDDTFVSCALIDMYSKCGSIEDAHCVFDQMPEKTTVG-WNSIIASYALHGYS 300
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
EA F Y M+ SG +I I+ + C+ +++
Sbjct: 301 EEALSFYYEMRDSGAKIDHFTISIVIRICARLAS 334
>gi|224089505|ref|XP_002308737.1| predicted protein [Populus trichocarpa]
gi|222854713|gb|EEE92260.1| predicted protein [Populus trichocarpa]
Length = 590
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 92/289 (31%), Positives = 155/289 (53%), Gaps = 12/289 (4%)
Query: 16 LIKECT-FQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL 74
L+K CT K + G ++++ + + L+ N LL ++ CG L AR+LFDEM
Sbjct: 21 LLKRCTHLNKLNEG--KIIHALLLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLFDEMSS 78
Query: 75 RDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKAC--VCTMN 132
RD +W +I GY Q+ + L EM++ + L + + +LKA V + +
Sbjct: 79 RDVVTWTALITGYSQHDRPQDALLLLPEMLR-----IGLKPNQFTLASLLKAASGVGSTD 133
Query: 133 MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192
+ G+Q+HGL + G N+ ++ ++++ Y + LE+A +F + N V W A I
Sbjct: 134 VLQGRQLHGLCLRYGYDSNVYVSCAILDMYARCHHLEEAQLIFDVMVSKNEVSWNALIAG 193
Query: 193 NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLES 252
R+G + F F M RE +K +T+SSVL AC + G+ +HA ++K G +
Sbjct: 194 YARKGQGDKAFCLFSNMLRENVKPTHFTYSSVLCACASMGSLEQ-GKWVHALMIKWGEKL 252
Query: 253 DEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGL 301
+V L+DMY K + DA++VF+ + K+++ SWN+ML GY ++GL
Sbjct: 253 VAFVGNTLLDMYAKSGSIEDAKKVFDRLA-KRDVVSWNSMLTGYSQHGL 300
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 108/244 (44%), Gaps = 10/244 (4%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
+L M+ C L+ A+ +FD M ++ SW +I GY + LF+ M++
Sbjct: 159 ILDMYARCHHLEEAQLIFDVMVSKNEVSWNALIAGYARKGQGDKAFCLFSNMLRENVKPT 218
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+ + VL AC ++E GK VH L+ K G + +L++ Y K +EDA
Sbjct: 219 HFTYSS-----VLCACASMGSLEQGKWVHALMIKWGEKLVAFVGNTLLDMYAKSGSIEDA 273
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--G 229
VF +L + + V W + + + G F+EM R RI N TF VL AC
Sbjct: 274 KKVFDRLAKRDVVSWNSMLTGYSQHGLGKVALQRFEEMLRTRIAPNDITFLCVLTACSHA 333
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
G+ D+ GR + K +E +VD+ G+ L A + + K A W
Sbjct: 334 GLLDE---GRHYFDMMKKYNVEPQISHYVTMVDLLGRAGHLDRAIQFISEMPIKPTAAVW 390
Query: 290 NAML 293
A+L
Sbjct: 391 GALL 394
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 67/147 (45%), Gaps = 7/147 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N LL M+ G ++ A+++FD + RD SW M+ GY + + F EM++ +
Sbjct: 258 NTLLDMYAKSGSIEDAKKVFDRLAKRDVVSWNSMLTGYSQHGLGKVALQRFEEMLRTRIA 317
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ F +CVL AC ++ G+ ++ K IS ++++ G+ L+
Sbjct: 318 PNDITF-----LCVLTACSHAGLLDEGRHYFDMMKKYNVEPQISHYVTMVDLLGRAGHLD 372
Query: 170 DA-DFVFSQLKRHNTVVWTAKIVNNCR 195
A F+ + VW A ++ CR
Sbjct: 373 RAIQFISEMPIKPTAAVWGA-LLGACR 398
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 68/135 (50%), Gaps = 5/135 (3%)
Query: 208 EMGRERIKKNSYTFS---SVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMY 264
E+ R++ K N+ ++LK C ++ N G+ +HA ++ D +Q L+++Y
Sbjct: 2 ELIRQQCKNNAGAREICHTLLKRCTHLNK-LNEGKIIHALLLNSRFRDDLVMQNTLLNLY 60
Query: 265 GKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLI 324
KC L A ++F+ + +++ +W A++ GY ++ +A L M G++ + +
Sbjct: 61 AKCGDLVYARKLFDEM-SSRDVVTWTALITGYSQHDRPQDALLLLPEMLRIGLKPNQFTL 119
Query: 325 NDLRIACSSISASKI 339
L A S + ++ +
Sbjct: 120 ASLLKAASGVGSTDV 134
>gi|297802258|ref|XP_002869013.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297314849|gb|EFH45272.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 693
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 100/353 (28%), Positives = 168/353 (47%), Gaps = 32/353 (9%)
Query: 7 PITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTAR 66
P +T Y LI+ C+ + ++ HIR P ++ NR+L M+ CG L AR
Sbjct: 86 PAST--YCNLIQVCSQTRALEEGKKVHEHIRTS-GFVPGIVIWNRILGMYAKCGSLVDAR 142
Query: 67 QLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR----------------KKGH 110
++FDEMP RD SW VM+ GY +V +E LF EM +R +
Sbjct: 143 KVFDEMPERDVCSWNVMVNGYAEVGLLEEARNLFDEMPERDSYSWTAMVTGYVKKDQPEE 202
Query: 111 MLLVFPAWIIVCVLKACVCTMN-----------MELGKQVHGLLFKLGSSRNISLTGSLI 159
L+++ V K + T++ + GK++HG + + G + L SL+
Sbjct: 203 ALVLYSLMQRVPNSKPNIFTVSSAVAAAAAIKCIRRGKEIHGHIVRAGLDSDEVLWSSLM 262
Query: 160 NFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSY 219
+ YGK C+++A +F ++ + V WT+ I + + + F+ F E+ + N Y
Sbjct: 263 DMYGKCGCIDEARNIFDKIIDKDVVSWTSMIDRYFKSSRWREGFSLFSELIGSCERPNEY 322
Query: 220 TFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFEL 279
TFS VL AC + + GRQ+H + ++G + + L+DMY KC + A V +
Sbjct: 323 TFSGVLNACADLTTE-ELGRQVHGYMTRVGFDPYSFASSSLIDMYTKCGNIESARHVVDG 381
Query: 280 IVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
K ++ S +++ GY +NG EA K+ L+ SG + ++ AC+
Sbjct: 382 -CPKPDLVSLTSLIGGYAQNGKPDEALKYFDLLLKSGTKPDHVTFVNVLSACT 433
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 74/279 (26%), Positives = 118/279 (42%), Gaps = 34/279 (12%)
Query: 31 ELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDV 90
E+ HI R + + + L+ M+ CG +D AR +FD++ +D SW MI Y
Sbjct: 241 EIHGHI-VRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIIDKDVVSWTSMIDRYFKS 299
Query: 91 ADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSR 150
+ ++E +LF+E++ + F VL AC ELG+QVHG + ++G
Sbjct: 300 SRWREGFSLFSELIGSCERPNEYTFSG-----VLNACADLTTEELGRQVHGYMTRVGFDP 354
Query: 151 NISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMG 210
+ SLI+ Y K +E A V + + V T+ I + G + F +
Sbjct: 355 YSFASSSLIDMYTKCGNIESARHVVDGCPKPDLVSLTSLIGGYAQNGKPDEALKYFDLLL 414
Query: 211 RERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLE--------------SDEYV 256
+ K + TF +VL AC HA +V+ GLE SD Y
Sbjct: 415 KSGTKPDHVTFVNVLSAC------------THAGLVEKGLEFFYSITEKHDLTHTSDHYT 462
Query: 257 QCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
C LVD+ + + V + K + W ++L G
Sbjct: 463 -C-LVDLLARSGRFEQLKSVLSEMPMKPSKFLWASVLGG 499
Score = 45.4 bits (106), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 77/175 (44%), Gaps = 25/175 (14%)
Query: 140 HGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHF 199
HGL+FK + L + Y + D F S+L+ VV CR F
Sbjct: 14 HGLIFK---------SNLLSSSYASQKRFSDKKFFDSKLEDGGVVVERL-----CRANRF 59
Query: 200 HQVFNDF--KEMGRERI-------KKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGL 250
+ + +++ RE + K + T+ ++++ C G+++H +I G
Sbjct: 60 GEAIDVLCGQKLLREAVQLLGRAKKPPASTYCNLIQVCSQTRALEE-GKKVHEHIRTSGF 118
Query: 251 ESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEA 305
+ ++ MY KC L DA +VF+ + + +++ SWN M+ GY GL EA
Sbjct: 119 VPGIVIWNRILGMYAKCGSLVDARKVFDEMPE-RDVCSWNVMVNGYAEVGLLEEA 172
>gi|242062166|ref|XP_002452372.1| hypothetical protein SORBIDRAFT_04g024590 [Sorghum bicolor]
gi|241932203|gb|EES05348.1| hypothetical protein SORBIDRAFT_04g024590 [Sorghum bicolor]
Length = 691
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 86/271 (31%), Positives = 140/271 (51%), Gaps = 8/271 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMP-LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
N L+ M+ G +D A+++FDE R+ SW MI YV ++ + +F EM+ +
Sbjct: 139 NALVAMYGGFGMVDEAKRIFDEPGGERNAVSWNGMISAYVKNDRCRDAVGVFREMVWSGE 198
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
F CV+ AC + + E G+QVHG++ + G +++ +L++ Y K +
Sbjct: 199 RPNEFGFS-----CVVNACTGSRDWETGRQVHGMVVRTGYDKDVFTANALVDMYSKLGDI 253
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
E A VF ++ + V W A I GH H+ +M + N +T SSVLKAC
Sbjct: 254 EMAAVVFEKIPAADVVSWNALIAGCVTHGHDHRALELLLQMKPLGVVPNVFTLSSVLKAC 313
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
G N GRQ+H ++K +SDE+V GLVDMY K L DA +VF+ + ++++
Sbjct: 314 AGA-GAFNLGRQIHGFMIKADADSDEFVAVGLVDMYAKDGFLDDARKVFDFM-PRRDLIL 371
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQI 319
WNA++ G +G + E + M+ G+ +
Sbjct: 372 WNALISGCSHDGRHGEVLSLFHRMRKEGLDL 402
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 90/327 (27%), Positives = 153/327 (46%), Gaps = 12/327 (3%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
++C++ CT +D ++ + R + N L+ M+ G ++ A +F+++
Sbjct: 205 FSCVVNACTGSRDWETGRQVHGMV-VRTGYDKDVFTANALVDMYSKLGDIEMAAVVFEKI 263
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTM 131
P D SW +I G V + L +M L V P + + VLKAC
Sbjct: 264 PAADVVSWNALIAGCVTHGHDHRALELLLQMKP------LGVVPNVFTLSSVLKACAGAG 317
Query: 132 NMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIV 191
LG+Q+HG + K + + + L++ Y K L+DA VF + R + ++W A I
Sbjct: 318 AFNLGRQIHGFMIKADADSDEFVAVGLVDMYAKDGFLDDARKVFDFMPRRDLILWNALIS 377
Query: 192 NNCREGHFHQVFNDFKEMGRE--RIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIG 249
+G +V + F M +E + N T ++VLK+ ++ + +Q+HA KIG
Sbjct: 378 GCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLAAVLKSTASLEAICHT-KQVHALAEKIG 436
Query: 250 LESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFL 309
L SD +V GL+D Y KC L A +VFE +I S +M+ + +A K
Sbjct: 437 LLSDSHVVNGLIDSYWKCGRLDYAIKVFEESC-SDDIISSTSMMTALSQCDHGEDAIKLF 495
Query: 310 YLMKASGIQIQESLINDLRIACSSISA 336
M G++ +++ L AC+S+SA
Sbjct: 496 VQMLRKGLEPDSFVLSSLLNACASLSA 522
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 80/290 (27%), Positives = 127/290 (43%), Gaps = 11/290 (3%)
Query: 48 FLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRK 107
+ N LL + C AR +FDE+P SW+ ++ Y + ++ + F M R
Sbjct: 39 YSNHLLSFYSRCRLPSAARAVFDEIPDPCHVSWSSLVTAYSNNGMPRDALWAFRSMRGRG 98
Query: 108 KGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
P VLK C ++ G QVH L +++ +T +L+ YG F
Sbjct: 99 VPCNEYALP-----IVLK---CAPDVRFGAQVHALAVATRLIQDVFVTNALVAMYGGFGM 150
Query: 168 LEDADFVFSQL-KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
+++A +F + N V W I + F+EM + N + FS V+
Sbjct: 151 VDEAKRIFDEPGGERNAVSWNGMISAYVKNDRCRDAVGVFREMVWSGERPNEFGFSCVVN 210
Query: 227 ACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
AC G D GRQ+H +V+ G + D + LVDMY K + A VFE I ++
Sbjct: 211 ACTG-SRDWETGRQVHGMVVRTGYDKDVFTANALVDMYSKLGDIEMAAVVFEKI-PAADV 268
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
SWNA++ G + +G A + L MK G+ ++ + AC+ A
Sbjct: 269 VSWNALIAGCVTHGHDHRALELLLQMKPLGVVPNVFTLSSVLKACAGAGA 318
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 91/332 (27%), Positives = 151/332 (45%), Gaps = 14/332 (4%)
Query: 6 LPITTDMYT--CLIKECTFQKDSAGAFELLNHIRK---RVNIKPTLLFLNRLLLMHVSCG 60
L + +++T ++K C AGAF L I + + L+ M+ G
Sbjct: 297 LGVVPNVFTLSSVLKACA----GAGAFNLGRQIHGFMIKADADSDEFVAVGLVDMYAKDG 352
Query: 61 QLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWII 120
LD AR++FD MP RD W +I G + E ++LF M RK+G L V +
Sbjct: 353 FLDDARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSLFHRM--RKEGLDLDVNRT-TL 409
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
VLK+ + KQVH L K+G + + LI+ Y K L+ A VF +
Sbjct: 410 AAVLKSTASLEAICHTKQVHALAEKIGLLSDSHVVNGLIDSYWKCGRLDYAIKVFEESCS 469
Query: 181 HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQ 240
+ + T+ + + H F +M R+ ++ +S+ SS+L AC + G+Q
Sbjct: 470 DDIISSTSMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACASLSAYEQ-GKQ 528
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
+HA+++K SD + LV Y KC + DA+ F + +K + SW+AM+ G ++G
Sbjct: 529 VHAHLIKRQFTSDVFAGNALVYTYAKCGSIEDADMAFSGL-PEKGVVSWSAMIGGLAQHG 587
Query: 301 LYVEATKFLYLMKASGIQIQESLINDLRIACS 332
A + + M G+ + + AC+
Sbjct: 588 HGKRALELFHRMLDEGVAPNNITLTSVLSACN 619
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 70/248 (28%), Positives = 118/248 (47%), Gaps = 11/248 (4%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
+N L+ + CG+LD A ++F+E D S M+ ++ I LF +M+++
Sbjct: 444 VNGLIDSYWKCGRLDYAIKVFEESCSDDIISSTSMMTALSQCDHGEDAIKLFVQMLRKG- 502
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
L ++++ +L AC E GKQVH L K + ++ +L+ Y K +
Sbjct: 503 ----LEPDSFVLSSLLNACASLSAYEQGKQVHAHLIKRQFTSDVFAGNALVYTYAKCGSI 558
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
EDAD FS L V W+A I + GH + F M E + N+ T +SVL AC
Sbjct: 559 EDADMAFSGLPEKGVVSWSAMIGGLAQHGHGKRALELFHRMLDEGVAPNNITLTSVLSAC 618
Query: 229 --GGVDDDGNCGRQMHANIVKIGLE-SDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
G+ DD + + G++ ++E+ C ++D+ G+ L+DA + + + N
Sbjct: 619 NHAGLVDDAK--KYFESMKEAFGIDRTEEHYAC-MIDILGRAGKLKDAMELVNNMPFQAN 675
Query: 286 IASWNAML 293
A W A+L
Sbjct: 676 AAVWGALL 683
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 79/186 (42%), Gaps = 6/186 (3%)
Query: 136 GKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCR 195
G +H L K S S + L++FY + R A VF ++ V W++ +
Sbjct: 23 GAHLHSHLLK--SGLLASYSNHLLSFYSRCRLPSAARAVFDEIPDPCHVSWSSLVTAYSN 80
Query: 196 EGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEY 255
G F+ M + N Y VLK D G Q+HA V L D +
Sbjct: 81 NGMPRDALWAFRSMRGRGVPCNEYALPIVLKCA----PDVRFGAQVHALAVATRLIQDVF 136
Query: 256 VQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKAS 315
V LV MYG ++ +A+R+F+ ++N SWN M+ Y++N +A M S
Sbjct: 137 VTNALVAMYGGFGMVDEAKRIFDEPGGERNAVSWNGMISAYVKNDRCRDAVGVFREMVWS 196
Query: 316 GIQIQE 321
G + E
Sbjct: 197 GERPNE 202
>gi|297743497|emb|CBI36364.3| unnamed protein product [Vitis vinifera]
Length = 832
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 96/336 (28%), Positives = 169/336 (50%), Gaps = 23/336 (6%)
Query: 13 YTCLIKEC----TFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDT---A 65
Y+ LI++C +FQ+ + +++++ P + ++L+++ G LD A
Sbjct: 74 YSSLIQDCIDSNSFQRGKSIHTQMISN-----GYNPDAYLMTKILMLYARSGCLDDLCYA 128
Query: 66 RQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCVL 124
R+LF+EMP R+ +W MI+ Y V DY E +F M+K + V P + L
Sbjct: 129 RKLFEEMPERNLTAWNTMILAYARVDDYMEAWGIFDRMLK------IGVCPDNFTFASAL 182
Query: 125 KACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTV 184
+ C + + GKQVH L G + + +LI+ Y K E VF ++ N V
Sbjct: 183 RVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQV 242
Query: 185 VWTAKIVNNCREGHFHQVFNDFKEM--GRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
W + I + GHF+ F M + I+ + +TF+++L C +D N GRQ+H
Sbjct: 243 TWNSIISAEAQFGHFNDALVLFLRMQESEDGIQPDQFTFTTLLTLCANQRND-NQGRQIH 301
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
A++++ + + V+ LV MY +C L A+ +F + + +N SWN+M+ GY +NG
Sbjct: 302 AHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAE-RNAYSWNSMIEGYQQNGET 360
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIACSSISASK 338
EA + M+ +GI+ ++ + +C S+S S+
Sbjct: 361 QEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQ 396
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 77/303 (25%), Positives = 141/303 (46%), Gaps = 18/303 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ C ++ ++FDEM R+ +W +I + + + LF M + + G
Sbjct: 214 NALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESEDG 273
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ + +L C N G+Q+H L + ++NI + L++ Y + L
Sbjct: 274 ---IQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLN 330
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A +F+++ N W + I + G + FK+M IK + ++ SS+L +C
Sbjct: 331 YAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCV 390
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK-KNIAS 288
+ D GR++H IV+ +E + +Q LVDMY KC + A +V++ + K +N A
Sbjct: 391 SLSDSQK-GRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDRNTAL 449
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQ-------------IQESLINDLRIACSSIS 335
WN++L GY GL E+ M S I+ + E+ + D+ C +I+
Sbjct: 450 WNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLLVLETALVDMYSKCGAIT 509
Query: 336 ASK 338
++
Sbjct: 510 KAR 512
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 83/323 (25%), Positives = 145/323 (44%), Gaps = 37/323 (11%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
+T L+ C Q++ ++ H+ R NI ++ L+ M+ CG+L+ A+++F+ M
Sbjct: 281 FTTLLTLCANQRNDNQGRQIHAHL-IRANITKNIIVETELVHMYSECGRLNYAKEIFNRM 339
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTM 131
R+ SW MI GY + QE + LF +M + + P + + +L +CV
Sbjct: 340 AERNAYSWNSMIEGYQQNGETQEALRLFKQM------QLNGIKPDCFSLSSMLSSCVSLS 393
Query: 132 NMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL--KRHNTVVWTAK 189
+ + G+++H + + L L++ Y K ++ A V+ Q K NT +W +
Sbjct: 394 DSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDRNTALWNSI 453
Query: 190 IVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIG 249
+ +G + FN F EM I+ + T +++ N++
Sbjct: 454 LAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIV------------------NLL--- 492
Query: 250 LESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFL 309
++ LVDMY KC + A VF+ + + KNI SWNAM+ GY ++G EA
Sbjct: 493 -----VLETALVDMYSKCGAITKARTVFDNM-NGKNIVSWNAMISGYSKHGCSKEALILY 546
Query: 310 YLMKASGIQIQESLINDLRIACS 332
M G+ E + ACS
Sbjct: 547 EEMPKKGMYPNEVTFLAILSACS 569
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/295 (21%), Positives = 117/295 (39%), Gaps = 59/295 (20%)
Query: 14 TCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMP 73
+ ++ C DS EL N I + + +L + L+ M+ CG +D A +++D+
Sbjct: 383 SSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQV-VLVDMYAKCGSMDYAWKVYDQTI 441
Query: 74 LRDFNS--WAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTM 131
+D N+ W ++ GY + +E F EM++ + +L + + VL+
Sbjct: 442 KKDRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLLVLET----- 496
Query: 132 NMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIV 191
+L++ Y K + A VF + N V W A I
Sbjct: 497 -------------------------ALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMIS 531
Query: 192 NNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLE 251
+ G + ++EM ++ + N TF ++L AC H +V+ GL
Sbjct: 532 GYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACS------------HTGLVEEGLR 579
Query: 252 -------------SDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
E+ C +VD+ G+ L DA+ E + + +++W A+L
Sbjct: 580 IFTSMQEDYNIEAKAEHYTC-MVDLLGRAGRLEDAKEFVEKMPIEPEVSTWGALL 633
>gi|302795249|ref|XP_002979388.1| hypothetical protein SELMODRAFT_110549 [Selaginella moellendorffii]
gi|300153156|gb|EFJ19796.1| hypothetical protein SELMODRAFT_110549 [Selaginella moellendorffii]
Length = 459
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 90/312 (28%), Positives = 153/312 (49%), Gaps = 22/312 (7%)
Query: 8 ITTDMYTCLIKECTFQKDSAGAFELLNHI----RKRVNIKPTLLFLNRLLL-MHVSCGQL 62
++ Y L+K+C +K ++ HI K PT FL LLL ++ CG L
Sbjct: 10 VSAATYASLLKQCIARKALGHGRQIHAHILAAKEKDPRAAPTAPFLGNLLLQLYARCGDL 69
Query: 63 DTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIV 121
D AR +FD + R+ SW M+ GYV + + L+ + KR++ + P A++
Sbjct: 70 DRARSIFDGLAHRNLFSWTTMMGGYVQRGRFDRALDLYHCLEKREEPSYRSIEPDAFVYT 129
Query: 122 CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH 181
L AC ++ G+ +H + S R++ L ++IN Y K C+ +A VF +++
Sbjct: 130 IALAACSSLGDLASGRAIHARCYDR-SIRDVILDTAIINMYAKCGCVGEAKIVFDSMRQR 188
Query: 182 NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSS------VLKACGGVDDDG 235
+++ W A I R GH + + EM + + + TF++ +L AC ++
Sbjct: 189 DSIAWNATIAAFARNGHLREAILLYLEMTAQGLDPSEATFTTAFTLSILLGACASLESL- 247
Query: 236 NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA-------- 287
+ GR++HA I+ G+ESD + LV MY KC L DA RVF+ + ++
Sbjct: 248 DRGREIHATIIDRGMESDTVLLNSLVRMYSKCGSLLDAMRVFQSALQDRDRGGGGSIDAI 307
Query: 288 SWNAMLVGYIRN 299
+WNA++V R+
Sbjct: 308 TWNAIIVASARS 319
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 94/218 (43%), Gaps = 15/218 (6%)
Query: 117 AWIIVCVLKACVCTMNMELGKQVHG--LLFKLGSSRNIS----LTGSLINFYGKFRCLED 170
A +LK C+ + G+Q+H L K R L L+ Y + L+
Sbjct: 12 AATYASLLKQCIARKALGHGRQIHAHILAAKEKDPRAAPTAPFLGNLLLQLYARCGDLDR 71
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDF------KEMGRERIKKNSYTFSSV 224
A +F L N WT + + G F + + + +E I+ +++ ++
Sbjct: 72 ARSIFDGLAHRNLFSWTTMMGGYVQRGRFDRALDLYHCLEKREEPSYRSIEPDAFVYTIA 131
Query: 225 LKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
L AC + D + GR +HA + D + +++MY KC + +A+ VF+ + +
Sbjct: 132 LAACSSLGDLAS-GRAIHARCYDRSIR-DVILDTAIINMYAKCGCVGEAKIVFDSMRQRD 189
Query: 285 NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQES 322
+IA WNA + + RNG EA M A G+ E+
Sbjct: 190 SIA-WNATIAAFARNGHLREAILLYLEMTAQGLDPSEA 226
>gi|242034867|ref|XP_002464828.1| hypothetical protein SORBIDRAFT_01g027350 [Sorghum bicolor]
gi|241918682|gb|EER91826.1| hypothetical protein SORBIDRAFT_01g027350 [Sorghum bicolor]
Length = 447
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 93/317 (29%), Positives = 163/317 (51%), Gaps = 12/317 (3%)
Query: 17 IKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRD 76
+K C +K +L I KR+ K + + L+ M+ CG++ A+ +FD+MP R+
Sbjct: 119 LKACAEEKALRFGKQLHGAIVKRL-YKYDIHVGSALVTMYARCGEVFDAQAVFDKMPRRN 177
Query: 77 FNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELG 136
+W MI GY +E + LF +M R+ + +V +L AC ++ LG
Sbjct: 178 TITWTSMISGYAQSGCGEEAVLLFRKMKMRR-----VFVNHLTVVGLLSACGSMQSIYLG 232
Query: 137 KQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED--ADFVFSQLKRHNTVVWTAKIVNNC 194
K++H + K +N+ + +L+ FY RC E A + + + V WTA I
Sbjct: 233 KELHAQIIKNCMEQNLQIGSTLVWFYS--RCGEHTYAARILEAMPDRDAVAWTAMISGYN 290
Query: 195 REGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDE 254
GH + EM + + N+YT+SS LKAC ++ + GR++H + K S+
Sbjct: 291 NLGHNVEALKSLDEMLWDGVAPNTYTYSSALKACARLEALRD-GRRIHGVVNKTQAFSNV 349
Query: 255 YVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKA 314
+V C L+DMY +C + +A RVF+ + + N+ +W M+ G+ +N L EA K++YLM+
Sbjct: 350 FVGCSLIDMYMRCGKVDEARRVFDAM-PEHNLVTWKVMITGFTQNCLCEEALKYMYLMQQ 408
Query: 315 SGIQIQESLINDLRIAC 331
G + + +++ + +C
Sbjct: 409 DGYDVDDFVLSTVLSSC 425
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 83/282 (29%), Positives = 128/282 (45%), Gaps = 9/282 (3%)
Query: 56 HVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVF 115
+ CG + A +FD M RD SW MI YV + + +F +M+
Sbjct: 56 YAQCGDVAAASTVFDRMASRDVVSWTTMITAYVQHGHGDKALQMFPKMVSEG------FR 109
Query: 116 PAWIIVC-VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFV 174
P VC LKAC + GKQ+HG + K +I + +L+ Y + + DA V
Sbjct: 110 PNEFTVCSALKACAEEKALRFGKQLHGAIVKRLYKYDIHVGSALVTMYARCGEVFDAQAV 169
Query: 175 FSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDD 234
F ++ R NT+ WT+ I + G + F++M R+ N T +L ACG +
Sbjct: 170 FDKMPRRNTITWTSMISGYAQSGCGEEAVLLFRKMKMRRVFVNHLTVVGLLSACGSMQSI 229
Query: 235 GNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLV 294
G+++HA I+K +E + + LV Y +C A R+ E + D+ +A W AM+
Sbjct: 230 -YLGKELHAQIIKNCMEQNLQIGSTLVWFYSRCGEHTYAARILEAMPDRDAVA-WTAMIS 287
Query: 295 GYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
GY G VEA K L M G+ + AC+ + A
Sbjct: 288 GYNNLGHNVEALKSLDEMLWDGVAPNTYTYSSALKACARLEA 329
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 109/216 (50%), Gaps = 3/216 (1%)
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
VC+LK+C + +LG+QVH + K G S N+ + ++ +FY + + A VF ++
Sbjct: 16 VCLLKSCGERCDAKLGQQVHCCVVKGGWS-NVIVDSAVAHFYAQCGDVAAASTVFDRMAS 74
Query: 181 HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQ 240
+ V WT I + GH + F +M E + N +T S LKAC + G+Q
Sbjct: 75 RDVVSWTTMITAYVQHGHGDKALQMFPKMVSEGFRPNEFTVCSALKACAE-EKALRFGKQ 133
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
+H IVK + D +V LV MY +C + DA+ VF+ + ++N +W +M+ GY ++G
Sbjct: 134 LHGAIVKRLYKYDIHVGSALVTMYARCGEVFDAQAVFDKM-PRRNTITWTSMISGYAQSG 192
Query: 301 LYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
EA MK + + + L AC S+ +
Sbjct: 193 CGEEAVLLFRKMKMRRVFVNHLTVVGLLSACGSMQS 228
>gi|359489486|ref|XP_002269573.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g33170-like [Vitis vinifera]
Length = 786
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 92/294 (31%), Positives = 149/294 (50%), Gaps = 18/294 (6%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N ++ + + G+L+ AR+LF E P+R +W+ +I GY E + LF EM +
Sbjct: 76 NTMIGAYANSGRLNEARKLFYETPIRSCITWSSLISGYCRYGCDVEALELFWEMQYEGER 135
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ + VL+ C + +E GKQ+H K N + L++ Y K +C+
Sbjct: 136 PNQFTWGS-----VLRVCSMYVLLEKGKQIHAHAIKTQFDSNAFVVTGLVDMYAKCKCIL 190
Query: 170 DADFVFS-QLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+A+++F + N V+WTA + + G H+ F++M E I+ N +TF S+L AC
Sbjct: 191 EAEYLFELAPDKRNHVLWTAMVTGYSQNGDGHKAIECFRDMRGEGIECNQFTFPSILTAC 250
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
G + G G Q+H IV+ G ++ +V LVDMY KC L +A R+ E + + + S
Sbjct: 251 GSISACG-FGAQVHGCIVRSGFGANVFVGSALVDMYSKCGDLSNARRMLETM-EVDDPVS 308
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQE----------SLINDLRIACS 332
WN+M+VG +R GL EA +M ++I E S + D+R A S
Sbjct: 309 WNSMIVGCVRQGLGEEALSLFRIMHLRHMKIDEFTYPSVLNCFSFVMDMRNAMS 362
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 82/285 (28%), Positives = 132/285 (46%), Gaps = 8/285 (2%)
Query: 52 LLLMHVSCGQLDTARQLFDEMP-LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGH 110
L+ M+ C + A LF+ P R+ W M+ GY D + I F +M
Sbjct: 179 LVDMYAKCKCILEAEYLFELAPDKRNHVLWTAMVTGYSQNGDGHKAIECFRDMRGEGIEC 238
Query: 111 MLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
FP+ +L AC G QVHG + + G N+ + +L++ Y K L +
Sbjct: 239 NQFTFPS-----ILTACGSISACGFGAQVHGCIVRSGFGANVFVGSALVDMYSKCGDLSN 293
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
A + ++ + V W + IV R+G + + F+ M +K + +T+ SVL
Sbjct: 294 ARRMLETMEVDDPVSWNSMIVGCVRQGLGEEALSLFRIMHLRHMKIDEFTYPSVLNCFSF 353
Query: 231 VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWN 290
V D N +H+ IVK G E+ + V LVDMY K A VFE + D K++ SW
Sbjct: 354 VMDMRN-AMSVHSLIVKTGFEAYKLVNNALVDMYAKRGYFDYAFDVFEKMTD-KDVISWT 411
Query: 291 AMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
+++ G + NG Y EA + M+ GI + +I + AC+ ++
Sbjct: 412 SLVTGCVHNGSYEEALRLFCEMRIMGIHPDQIVIAAVLSACAELT 456
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 100/194 (51%), Gaps = 1/194 (0%)
Query: 143 LFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQV 202
LF + R+ ++I Y L +A +F + + + W++ I CR G +
Sbjct: 63 LFDVMPDRDECSWNTMIGAYANSGRLNEARKLFYETPIRSCITWSSLISGYCRYGCDVEA 122
Query: 203 FNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVD 262
F EM E + N +T+ SVL+ C + G+Q+HA+ +K +S+ +V GLVD
Sbjct: 123 LELFWEMQYEGERPNQFTWGSVLRVCS-MYVLLEKGKQIHAHAIKTQFDSNAFVVTGLVD 181
Query: 263 MYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQES 322
MY KC+ + +AE +FEL DK+N W AM+ GY +NG +A + M+ GI+ +
Sbjct: 182 MYAKCKCILEAEYLFELAPDKRNHVLWTAMVTGYSQNGDGHKAIECFRDMRGEGIECNQF 241
Query: 323 LINDLRIACSSISA 336
+ AC SISA
Sbjct: 242 TFPSILTACGSISA 255
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 89/331 (26%), Positives = 140/331 (42%), Gaps = 48/331 (14%)
Query: 5 CLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDT 64
C DM + K A++L+N N L+ M+ G D
Sbjct: 350 CFSFVMDMRNAMSVHSLIVKTGFEAYKLVN---------------NALVDMYAKRGYFDY 394
Query: 65 ARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVC-V 123
A +F++M +D SW ++ G V Y+E + LF EM ++ + P I++ V
Sbjct: 395 AFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEM------RIMGIHPDQIVIAAV 448
Query: 124 LKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNT 183
L AC +E GKQVH K G ++S+ SL++ Y K C+EDA+ VF ++ +
Sbjct: 449 LSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDANKVFDSMEIQDV 508
Query: 184 VVWTAKIVNNCREG----------HFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDD 233
+ WTA IV + G H F +E+ + Y AC +D
Sbjct: 509 ITWTALIVGYAQNGRGRDHAGLVEHGRSYFQSMEEVYGIKPGPEHY-------AC-MIDL 560
Query: 234 DGNCGRQMHAN--IVKIGLESDEYVQCGLVD---MYGKCRL-LRDAERVFELIVDKKNIA 287
G G+ M A + ++ ++ D V L+ ++G L R A +FEL + KN
Sbjct: 561 LGRSGKLMEAKELLNQMAVQPDATVWKALLAACRVHGNVELGERAANNLFEL--EPKNAV 618
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
+ + Y G + EA K LMK G+
Sbjct: 619 PYVLLSNLYSAAGKWEEAAKTRRLMKLRGVS 649
>gi|357510605|ref|XP_003625591.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355500606|gb|AES81809.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 887
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 99/324 (30%), Positives = 151/324 (46%), Gaps = 6/324 (1%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
+ +IK C D +L H+ K L N L+ M+ + GQ++ A +F +
Sbjct: 263 FGSVIKACYIAGDIDLGRQLHAHVIKSW-FGHHLTSQNALISMYTNFGQIEHASNVFTRI 321
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN 132
P +D SW MI GY+ + E + LF +++++ +I V AC +
Sbjct: 322 PTKDLISWGTMITGYIQLGYRVEALYLFRDLLRQGTYQP----NEFIFGSVFSACSSLLE 377
Query: 133 MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192
+E GKQVHG+ K G RN+ SL + Y KF L A F Q+K + V W A I
Sbjct: 378 LEYGKQVHGMCVKFGLRRNVFAGCSLCDMYAKFGFLPSAKMAFCQIKNPDIVSWNAIIAA 437
Query: 193 NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLES 252
G ++ + F++M + +S T+ S+L CG N GRQ+H+ IVKIG +
Sbjct: 438 FADNGDANEAIDFFRQMIHIGLTPDSITYISLLCTCGS-PVRLNQGRQIHSYIVKIGFDK 496
Query: 253 DEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLM 312
+ V L+ MY KC L DA VF I N+ SWNA+L ++ E + M
Sbjct: 497 EITVCNSLLTMYTKCSHLHDALNVFRDISRNANLVSWNAILSACLQKKQEGETFRLYKEM 556
Query: 313 KASGIQIQESLINDLRIACSSISA 336
SG + I L C+ +++
Sbjct: 557 HFSGNKPDSITITTLLGTCAELTS 580
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 89/329 (27%), Positives = 158/329 (48%), Gaps = 11/329 (3%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
YT L+ C + A ++ +H+ K N +P+++ N ++ M+ CG + AR++FD M
Sbjct: 162 YTSLVLACANFRSLDYAKKIHDHVLKS-NYQPSIILQNHMINMYGKCGSMKDARKVFDTM 220
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN 132
L + SW MI GY + I ++ +M + + L F + V+KAC +
Sbjct: 221 QLPNVVSWTSMISGYSQNGQANDAIIMYIQMTRSGQFPDQLTFGS-----VIKACYIAGD 275
Query: 133 MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192
++LG+Q+H + K +++ +LI+ Y F +E A VF+++ + + W I
Sbjct: 276 IDLGRQLHAHVIKSWFGHHLTSQNALISMYTNFGQIEHASNVFTRIPTKDLISWGTMITG 335
Query: 193 NCREGHFHQVFNDFKEMGRE-RIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLE 251
+ G+ + F+++ R+ + N + F SV AC + + G+Q+H VK GL
Sbjct: 336 YIQLGYRVEALYLFRDLLRQGTYQPNEFIFGSVFSACSSLLEL-EYGKQVHGMCVKFGLR 394
Query: 252 SDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYL 311
+ + C L DMY K L A+ F + +I SWNA++ + NG EA F
Sbjct: 395 RNVFAGCSLCDMYAKFGFLPSAKMAF-CQIKNPDIVSWNAIIAAFADNGDANEAIDFFRQ 453
Query: 312 MKASGIQIQESLINDLRIACSSISASKIN 340
M G+ I + + C+ S ++N
Sbjct: 454 MIHIGLTPDS--ITYISLLCTCGSPVRLN 480
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 86/281 (30%), Positives = 134/281 (47%), Gaps = 8/281 (2%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+ G L +A+ F ++ D SW +I + D D E I F +M+ H+ L
Sbjct: 406 MYAKFGFLPSAKMAFCQIKNPDIVSWNAIIAAFADNGDANEAIDFFRQMI-----HIGLT 460
Query: 115 FPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFV 174
+ + +L C + + G+Q+H + K+G + I++ SL+ Y K L DA V
Sbjct: 461 PDSITYISLLCTCGSPVRLNQGRQIHSYIVKIGFDKEITVCNSLLTMYTKCSHLHDALNV 520
Query: 175 FSQLKRH-NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDD 233
F + R+ N V W A + ++ + F +KEM K +S T +++L C +
Sbjct: 521 FRDISRNANLVSWNAILSACLQKKQEGETFRLYKEMHFSGNKPDSITITTLLGTCAELTS 580
Query: 234 DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
G G Q+H +K GL D V GL+DMY KC L+ A VF+ +I SW++++
Sbjct: 581 LG-VGNQVHCYSIKSGLILDVSVCNGLIDMYAKCGSLKHARDVFD-STQNLDIVSWSSLI 638
Query: 294 VGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
VGY + GL EA +M G+Q E ACS I
Sbjct: 639 VGYAQCGLGHEALNLFRIMTNLGVQPNEVTYLGALSACSHI 679
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 112/243 (46%), Gaps = 7/243 (2%)
Query: 93 YQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNI 152
Y+E + F +K H F ++ AC +++ K++H + K +I
Sbjct: 139 YKEALEAFDFHLKNSNSH----FEPSTYTSLVLACANFRSLDYAKKIHDHVLKSNYQPSI 194
Query: 153 SLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRE 212
L +IN YGK ++DA VF ++ N V WT+ I + G + + +M R
Sbjct: 195 ILQNHMINMYGKCGSMKDARKVFDTMQLPNVVSWTSMISGYSQNGQANDAIIMYIQMTRS 254
Query: 213 RIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRD 272
+ TF SV+KAC + D + GRQ+HA+++K Q L+ MY +
Sbjct: 255 GQFPDQLTFGSVIKAC-YIAGDIDLGRQLHAHVIKSWFGHHLTSQNALISMYTNFGQIEH 313
Query: 273 AERVFELIVDKKNIASWNAMLVGYIRNGLYVEATK-FLYLMKASGIQIQESLINDLRIAC 331
A VF I K++ SW M+ GYI+ G VEA F L++ Q E + + AC
Sbjct: 314 ASNVFTRI-PTKDLISWGTMITGYIQLGYRVEALYLFRDLLRQGTYQPNEFIFGSVFSAC 372
Query: 332 SSI 334
SS+
Sbjct: 373 SSL 375
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 105/250 (42%), Gaps = 12/250 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFN--SWAVMIVGYVDVADYQECITLFAEMMKRK 107
N LL M+ C L A +F ++ R+ N SW ++ + E L+ EM
Sbjct: 502 NSLLTMYTKCSHLHDALNVFRDIS-RNANLVSWNAILSACLQKKQEGETFRLYKEM---- 556
Query: 108 KGHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166
H P I I +L C ++ +G QVH K G ++S+ LI+ Y K
Sbjct: 557 --HFSGNKPDSITITTLLGTCAELTSLGVGNQVHCYSIKSGLILDVSVCNGLIDMYAKCG 614
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
L+ A VF + + V W++ IV + G H+ N F+ M ++ N T+ L
Sbjct: 615 SLKHARDVFDSTQNLDIVSWSSLIVGYAQCGLGHEALNLFRIMTNLGVQPNEVTYLGALS 674
Query: 227 ACGGVDDDGNCGRQMHANIVKIGL-ESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
AC + R + + G+ + E+ C +VD+ + L +AE + +
Sbjct: 675 ACSHIGLVEEGWRLYKSMETEHGIPPTREHFSC-IVDLLARAGCLHEAETFIQKSGLDAD 733
Query: 286 IASWNAMLVG 295
I +W +L
Sbjct: 734 ITAWKTLLAA 743
>gi|357461615|ref|XP_003601089.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355490137|gb|AES71340.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 745
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 94/308 (30%), Positives = 147/308 (47%), Gaps = 41/308 (13%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
+ LN ++ ++ C + AR +FDEMP R+ SW M+ + + E ++L+ EM++
Sbjct: 38 IFILNNMISVYSKCSSIIDARNMFDEMPHRNIVSWTTMVSVLTNSSMPHEALSLYNEMIE 97
Query: 106 RKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
K + P ++ VLKAC N+ELGK VH +F+ +I L +L++ Y K
Sbjct: 98 SK-----IEQPNQFLYSAVLKACGLVRNVELGKMVHYHIFQAKLDVDIVLMNALLDMYVK 152
Query: 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERI---------- 214
L DA VF ++ N W I+ ++G F +M I
Sbjct: 153 CGSLRDAQRVFCEIPCKNATSWNTLILGYAKQGLIDDAMKLFDKMPEPDIVSWNSIIAGL 212
Query: 215 --------------------KKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDE 254
K + +TF SVLKAC G D+ GR++H I+K G ES
Sbjct: 213 VDNASSRALRFVSMMHGKGLKMDEFTFPSVLKAC-GCSDELMLGREIHCYIIKSGFESSC 271
Query: 255 YVQCGLVDMYGKCRLLRDAERVFELIVD----KKNIASWNAMLVGYIRNGLYVEATKFLY 310
Y L+DMY C+LL +A ++F+ +++A WN+ML G++ NG YVEA +
Sbjct: 272 YCISALIDMYSSCKLLSEATKIFDQYFRNSSVSESLALWNSMLSGHVVNGDYVEALSMIS 331
Query: 311 LMKASGIQ 318
M SG++
Sbjct: 332 HMHRSGVR 339
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 82/288 (28%), Positives = 138/288 (47%), Gaps = 12/288 (4%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMPLRDFNS-----WAVMIVGYVDVADYQECITLFAEM 103
++ L+ M+ SC L A ++FD+ S W M+ G+V DY E +++ + M
Sbjct: 274 ISALIDMYSSCKLLSEATKIFDQYFRNSSVSESLALWNSMLSGHVVNGDYVEALSMISHM 333
Query: 104 MKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYG 163
+ + F + VLK C+ N+ L QVHG + G + + LI+ Y
Sbjct: 334 HRSG-----VRFDFYTFSIVLKICMNFDNLSLASQVHGFVITSGYELDCVVGSILIDIYA 388
Query: 164 KFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSS 223
K + +A +F +L + V W++ I R G F+ F +M ++ + + S
Sbjct: 389 KQGSINNALRLFERLPDKDVVAWSSLITGCARFGSDKLAFSLFMDMIHLGLQIDHFVISI 448
Query: 224 VLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
VLKAC + + G+Q+H+ +K G ES+ V L+DMY KC + DA +F + +
Sbjct: 449 VLKACSSLASHQH-GKQVHSLCLKKGYESEGVVTTALIDMYAKCGDIEDALSLFGCLSEI 507
Query: 284 KNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
+ SW +++VG +NG EA L+ M SG + + I + AC
Sbjct: 508 DTM-SWTSIIVGCAQNGRAEEAISLLHKMIESGTKPNKITILGVLTAC 554
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 108/215 (50%), Gaps = 3/215 (1%)
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
I + C+ +++ K +H + K G +I + ++I+ Y K + DA +F ++
Sbjct: 6 IQIAFRYCIRFRSIKNAKSLHSHIIKSGFCNHIFILNNMISVYSKCSSIIDARNMFDEMP 65
Query: 180 RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKK-NSYTFSSVLKACGGVDDDGNCG 238
N V WT + H+ + + EM +I++ N + +S+VLKACG V + G
Sbjct: 66 HRNIVSWTTMVSVLTNSSMPHEALSLYNEMIESKIEQPNQFLYSAVLKACGLV-RNVELG 124
Query: 239 RQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIR 298
+ +H +I + L+ D + L+DMY KC LRDA+RVF + KN SWN +++GY +
Sbjct: 125 KMVHYHIFQAKLDVDIVLMNALLDMYVKCGSLRDAQRVF-CEIPCKNATSWNTLILGYAK 183
Query: 299 NGLYVEATKFLYLMKASGIQIQESLINDLRIACSS 333
GL +A K M I S+I L SS
Sbjct: 184 QGLIDDAMKLFDKMPEPDIVSWNSIIAGLVDNASS 218
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 115/245 (46%), Gaps = 11/245 (4%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ ++ G ++ A +LF+ +P +D +W+ +I G + +LF +M+ H+
Sbjct: 383 LIDIYAKQGSINNALRLFERLPDKDVVAWSSLITGCARFGSDKLAFSLFMDMI-----HL 437
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
L ++I VLKAC + + GKQVH L K G +T +LI+ Y K +EDA
Sbjct: 438 GLQIDHFVISIVLKACSSLASHQHGKQVHSLCLKKGYESEGVVTTALIDMYAKCGDIEDA 497
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--- 228
+F L +T+ WT+ IV + G + + +M K N T VL AC
Sbjct: 498 LSLFGCLSEIDTMSWTSIIVGCAQNGRAEEAISLLHKMIESGTKPNKITILGVLTACRHS 557
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
G V++ + + N I E+ C +VD+ G+ +A ++ + K +
Sbjct: 558 GLVEEAWDVFNSIETNHGLI--PCPEHYNC-MVDILGQAGRFEEAVKLISEMPFKPDKTI 614
Query: 289 WNAML 293
W+++L
Sbjct: 615 WSSLL 619
>gi|255565583|ref|XP_002523781.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536869|gb|EEF38507.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 661
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 97/296 (32%), Positives = 148/296 (50%), Gaps = 12/296 (4%)
Query: 43 KPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAE 102
+ T+ N L+ M+ G + A+ +FD M RD SW M+ GYV Y E I +F
Sbjct: 230 EATIFVCNSLINMYSKSGMVKNAKAVFDNMVTRDAISWNSMVAGYVANGLYLEAIEMFYH 289
Query: 103 MMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFY 162
+ R G L F I V+K+C + +Q+HG + K G + ++ +L+ Y
Sbjct: 290 L--RLAGVKLTNF---IFSSVIKSCANIKELGFARQLHGQVLKGGFEYDHNIRTALMVAY 344
Query: 163 GKFRCLEDADFVFSQLKR-HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTF 221
K R ++DA +FS + N V WTA I + + G Q N F EM RE ++ N YTF
Sbjct: 345 NKGREIDDAFKIFSMMYGIRNVVSWTAIISGHLQNGLAEQAVNLFCEMSREGVRPNDYTF 404
Query: 222 SSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIV 281
S++L A V ++HA ++K E V L+D Y K L +A +VFE I
Sbjct: 405 STILAAQPVVSP-----FEVHAQVIKSDYEKSPSVGTALLDAYVKLGNLNEASKVFERI- 458
Query: 282 DKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISAS 337
D K+I +W+AM+ GY + G A K L M G++ E + + AC++ +A+
Sbjct: 459 DDKDIVAWSAMVAGYAQTGDTEGAVKILIQMAKKGVEPNEYTFSSVINACTAPTAA 514
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 81/270 (30%), Positives = 141/270 (52%), Gaps = 6/270 (2%)
Query: 65 ARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVL 124
A+ +FD P +D ++ Y + E + LF + + L+ + CVL
Sbjct: 49 AQNVFDRSPKQDVVQCNHLLFDYSRNNSHHEVVNLFVAIHRSD-----LLTDGSTLSCVL 103
Query: 125 KACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTV 184
KAC C + G QVH K G +IS+ SL++ Y K +E+ VF +++ N V
Sbjct: 104 KACACLSCKKFGIQVHDYCVKSGFLEDISVGTSLVDMYMKSEYVEEGKRVFDEMEERNVV 163
Query: 185 VWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHAN 244
WT+ +V G + F EM IK N +TF++VL A + G Q+H
Sbjct: 164 SWTSLLVGYAHNGLNMEALECFFEMQAGAIKPNPFTFATVLGALADSKAIADKGVQIHTM 223
Query: 245 IVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVE 304
++K G E+ +V L++MY K ++++A+ VF+ +V + I SWN+M+ GY+ NGLY+E
Sbjct: 224 VIKNGFEATIFVCNSLINMYSKSGMVKNAKAVFDNMVTRDAI-SWNSMVAGYVANGLYLE 282
Query: 305 ATKFLYLMKASGIQIQESLINDLRIACSSI 334
A + Y ++ +G+++ + + + +C++I
Sbjct: 283 AIEMFYHLRLAGVKLTNFIFSSVIKSCANI 312
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/290 (25%), Positives = 138/290 (47%), Gaps = 7/290 (2%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M++ ++ +++FDEM R+ SW ++VGY E + F EM
Sbjct: 137 LVDMYMKSEYVEEGKRVFDEMEERNVVSWTSLLVGYAHNGLNMEALECFFEMQAGAIKPN 196
Query: 112 LLVFPAWIIVCVLKACVCTMNM-ELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
F VL A + + + G Q+H ++ K G I + SLIN Y K +++
Sbjct: 197 PFTF-----ATVLGALADSKAIADKGVQIHTMVIKNGFEATIFVCNSLINMYSKSGMVKN 251
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
A VF + + + W + + G + + F + +K ++ FSSV+K+C
Sbjct: 252 AKAVFDNMVTRDAISWNSMVAGYVANGLYLEAIEMFYHLRLAGVKLTNFIFSSVIKSCAN 311
Query: 231 VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWN 290
+ + G RQ+H ++K G E D ++ L+ Y K R + DA ++F ++ +N+ SW
Sbjct: 312 IKELG-FARQLHGQVLKGGFEYDHNIRTALMVAYNKGREIDDAFKIFSMMYGIRNVVSWT 370
Query: 291 AMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKIN 340
A++ G+++NGL +A M G++ + + + A +S +++
Sbjct: 371 AIISGHLQNGLAEQAVNLFCEMSREGVRPNDYTFSTILAAQPVVSPFEVH 420
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 77/319 (24%), Positives = 140/319 (43%), Gaps = 24/319 (7%)
Query: 8 ITTDMYTCLIKECTFQKDSAGAFELLNHIRK-----RVNIKPTLLFLNRLLLMHVSCGQL 62
+T +++ +IK C K+ A +L + K NI+ L+ + + ++
Sbjct: 297 LTNFIFSSVIKSCANIKELGFARQLHGQVLKGGFEYDHNIRTALM------VAYNKGREI 350
Query: 63 DTARQLFDEM-PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPA-WII 120
D A ++F M +R+ SW +I G++ ++ + LF EM + V P +
Sbjct: 351 DDAFKIFSMMYGIRNVVSWTAIISGHLQNGLAEQAVNLFCEMSREG------VRPNDYTF 404
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
+L A E VH + K ++ S+ +L++ Y K L +A VF ++
Sbjct: 405 STILAAQPVVSPFE----VHAQVIKSDYEKSPSVGTALLDAYVKLGNLNEASKVFERIDD 460
Query: 181 HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQ 240
+ V W+A + + G +M ++ ++ N YTFSSV+ AC G+Q
Sbjct: 461 KDIVAWSAMVAGYAQTGDTEGAVKILIQMAKKGVEPNEYTFSSVINACTAPTAAVEQGKQ 520
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
HA +K V LV MY K + A VF +++ SWN+M+ GY ++G
Sbjct: 521 FHAWSIKSRFNDALCVSSALVTMYAKRGEIESANEVFRR-QGVRDLVSWNSMVSGYAQHG 579
Query: 301 LYVEATKFLYLMKASGIQI 319
+A + M+ +++
Sbjct: 580 HARKALEVFKEMQDQNLEL 598
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 90/190 (47%), Gaps = 11/190 (5%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL +V G L+ A ++F+ + +D +W+ M+ GY D + + + +M K+
Sbjct: 438 LLDAYVKLGNLNEASKVFERIDDKDIVAWSAMVAGYAQTGDTEGAVKILIQMAKKG---- 493
Query: 112 LLVFP-AWIIVCVLKACVC-TMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
V P + V+ AC T +E GKQ H K + + ++ +L+ Y K +E
Sbjct: 494 --VEPNEYTFSSVINACTAPTAAVEQGKQFHAWSIKSRFNDALCVSSALVTMYAKRGEIE 551
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC- 228
A+ VF + + V W + + + GH + FKEM + ++ + TF V+ AC
Sbjct: 552 SANEVFRRQGVRDLVSWNSMVSGYAQHGHARKALEVFKEMQDQNLELDGVTFIGVISACT 611
Query: 229 --GGVDDDGN 236
G VD++ N
Sbjct: 612 HAGLVDEEPN 621
>gi|242051555|ref|XP_002454923.1| hypothetical protein SORBIDRAFT_03g001460 [Sorghum bicolor]
gi|241926898|gb|EES00043.1| hypothetical protein SORBIDRAFT_03g001460 [Sorghum bicolor]
Length = 741
Score = 144 bits (362), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 88/287 (30%), Positives = 136/287 (47%), Gaps = 9/287 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL M+ G + AR++FD+MP R+ SWA M+ GY +E LF M++
Sbjct: 164 LLNMYCKLGAISDARRVFDQMPHRNAVSWAAMVSGYATGKCSEEAFELFRLMLQECP--- 220
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
L ++ VL A + + +G Q+HGL+ K G +S+ SL+ Y K C++ A
Sbjct: 221 -LEKNEFVATAVLSAVSVPLGLLIGVQLHGLVLKDGLVGFVSVENSLVTMYAKAECMDAA 279
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
VF K N++ W+A I + G F +M +TF +L A
Sbjct: 280 MAVFGSSKERNSITWSAMITGYAQNGEADCAATMFLQMHSAGFSPTEFTFVGILNAS--- 336
Query: 232 DDDGN--CGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
D G G+Q H +VK+G E YV+ LVDMY KC DA+ F + D ++ W
Sbjct: 337 SDMGALVVGKQAHGLMVKLGFERQVYVKSALVDMYAKCGCTGDAKDGFHQLYDVDDVVIW 396
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
AM+ G+++NG + EA M G+ + + AC+ ++A
Sbjct: 397 TAMITGHVQNGEHEEALMLYSRMDKEGVMPSYLTVTSVLRACACLAA 443
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 84/284 (29%), Positives = 131/284 (46%), Gaps = 8/284 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ +D A +F R+ +W+ MI GY + T+F +M
Sbjct: 264 NSLVTMYAKAECMDAAMAVFGSSKERNSITWSAMITGYAQNGEADCAATMFLQMHSAGFS 323
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
F V +L A + +GKQ HGL+ KLG R + + +L++ Y K C
Sbjct: 324 PTEFTF-----VGILNASSDMGALVVGKQAHGLMVKLGFERQVYVKSALVDMYAKCGCTG 378
Query: 170 DADFVFSQL-KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
DA F QL + V+WTA I + + G + + M +E + + T +SVL+AC
Sbjct: 379 DAKDGFHQLYDVDDVVIWTAMITGHVQNGEHEEALMLYSRMDKEGVMPSYLTVTSVLRAC 438
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
+ G+Q+HA I+K G V L MY KC L D+ VF + D ++I S
Sbjct: 439 ACLAAL-EPGKQLHAQILKCGFGLGGSVGTALSTMYSKCGNLEDSMVVFRRMPD-RDIIS 496
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
WN+++ G+ ++G +A MK GI ++ ACS
Sbjct: 497 WNSIISGFSQHGRGRDALDLFEEMKLEGIAPDHITFINVLCACS 540
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 71/247 (28%), Positives = 113/247 (45%), Gaps = 14/247 (5%)
Query: 52 LLLMHVSCGQLDTARQLFDEM-PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGH 110
L+ M+ CG A+ F ++ + D W MI G+V +++E + L++ M K
Sbjct: 367 LVDMYAKCGCTGDAKDGFHQLYDVDDVVIWTAMITGHVQNGEHEEALMLYSRMDKEG--- 423
Query: 111 MLLVFPAWIIVC-VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
V P+++ V VL+AC C +E GKQ+H + K G S+ +L Y K LE
Sbjct: 424 ---VMPSYLTVTSVLRACACLAALEPGKQLHAQILKCGFGLGGSVGTALSTMYSKCGNLE 480
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC- 228
D+ VF ++ + + W + I + G + F+EM E I + TF +VL AC
Sbjct: 481 DSMVVFRRMPDRDIISWNSIISGFSQHGRGRDALDLFEEMKLEGIAPDHITFINVLCACS 540
Query: 229 --GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
G VD R M + I + D Y C +VD+ + L++A+ E I
Sbjct: 541 HMGLVDRGWFYFRAMSKDYGLIP-KLDHYA-C-IVDILSRAGQLKEAKDFIESITIDHGT 597
Query: 287 ASWNAML 293
W +L
Sbjct: 598 CLWRIVL 604
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 75/269 (27%), Positives = 114/269 (42%), Gaps = 18/269 (6%)
Query: 62 LDTARQLFDEMP--LRDFNSWAVMIVGYVDVADYQECITL--FAEMMKRKKGHMLLVFP- 116
L A +F ++P LRD SW ++ ++ +Q L F MM V P
Sbjct: 67 LGAAFAVFADIPAGLRDVASWNSLLN---PLSRHQPLAALSHFRSMMSSTDA----VLPT 119
Query: 117 AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSR---NISLTGSLINFYGKFRCLEDADF 173
V A + G H KL SS N+ ++ +L+N Y K + DA
Sbjct: 120 PHSFAAVFTAAARVPSASAGAVAHAFACKLPSSSGSNNVFVSTALLNMYCKLGAISDARR 179
Query: 174 VFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRE-RIKKNSYTFSSVLKACGGVD 232
VF Q+ N V W A + + F F+ M +E ++KN + ++VL A V
Sbjct: 180 VFDQMPHRNAVSWAAMVSGYATGKCSEEAFELFRLMLQECPLEKNEFVATAVLSAV-SVP 238
Query: 233 DDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAM 292
G Q+H ++K GL V+ LV MY K + A VF ++ +I +W+AM
Sbjct: 239 LGLLIGVQLHGLVLKDGLVGFVSVENSLVTMYAKAECMDAAMAVFGSSKERNSI-TWSAM 297
Query: 293 LVGYIRNGLYVEATKFLYLMKASGIQIQE 321
+ GY +NG A M ++G E
Sbjct: 298 ITGYAQNGEADCAATMFLQMHSAGFSPTE 326
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 81/186 (43%), Gaps = 12/186 (6%)
Query: 136 GKQVHGLLFKLGSSRNISLTGSLINFY-GKFRCLEDADF-VFSQLKR--HNTVVWTAKIV 191
G +HG K G++ + ++ SLI FY R L A F VF+ + + W + ++
Sbjct: 33 GDALHGWALKSGAASHTPVSNSLITFYCSPPRPLLGAAFAVFADIPAGLRDVASWNS-LL 91
Query: 192 NNCREGHFHQVFNDFKEM--GRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIG 249
N + F+ M + + ++F++V A V + G HA K+
Sbjct: 92 NPLSRHQPLAALSHFRSMMSSTDAVLPTPHSFAAVFTAAARV-PSASAGAVAHAFACKLP 150
Query: 250 LESDE---YVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEAT 306
S +V L++MY K + DA RVF+ + +N SW AM+ GY EA
Sbjct: 151 SSSGSNNVFVSTALLNMYCKLGAISDARRVFDQM-PHRNAVSWAAMVSGYATGKCSEEAF 209
Query: 307 KFLYLM 312
+ LM
Sbjct: 210 ELFRLM 215
>gi|147854092|emb|CAN83391.1| hypothetical protein VITISV_041405 [Vitis vinifera]
Length = 886
Score = 144 bits (362), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 144/281 (51%), Gaps = 7/281 (2%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+ C + A +LFDEMP RD SW +I Y ++ + LF EM + G
Sbjct: 342 MYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEM--KVSG---FK 396
Query: 115 FPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFV 174
+ + V+ +C +++E GK++H L + G + + ++ +L++ YGK CLE A V
Sbjct: 397 PDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEV 456
Query: 175 FSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDD 234
F Q++R N V W + I +G F+ M E I+ T SS+L AC +
Sbjct: 457 FEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSR-SVN 515
Query: 235 GNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLV 294
G+ +H I++ +E+D +V L+D+Y KC + AE VF+ + K N+ SWN M+
Sbjct: 516 LQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNM-PKTNVVSWNVMIS 574
Query: 295 GYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
GY++ G Y+EA M+ +G++ + ACS ++
Sbjct: 575 GYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLA 615
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/281 (28%), Positives = 141/281 (50%), Gaps = 7/281 (2%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ CG L+ A+++F+++ ++ SW MI GY D + CI LF M +
Sbjct: 440 LVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPT 499
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
L + +L AC ++N++LGK +HG + + +I + SLI+ Y K + A
Sbjct: 500 LTTLSS-----ILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSA 554
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
+ VF + + N V W I + G + + F +M + +K ++ TF+SVL AC +
Sbjct: 555 ENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQL 614
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
G+++H I++ LE +E V L+DMY KC + +A +F + +++ SW +
Sbjct: 615 AVLEK-GKEIHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQL-PERDFVSWTS 672
Query: 292 MLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
M+ Y +G EA K M+ S + + + ACS
Sbjct: 673 MIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACS 713
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/288 (28%), Positives = 134/288 (46%), Gaps = 19/288 (6%)
Query: 52 LLLMHVSCGQLDTARQLFD--EMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
L+ ++ SC +A+ +F E PL D W ++ + E + +F
Sbjct: 236 LINLYFSCHLFQSAKLVFQTIENPL-DITLWNGLMAACTKNFIFIEGLEVF--------- 285
Query: 110 HMLLVFP-----AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
H LL FP A+ VLKAC + GK VH + K G + ++ + S + Y K
Sbjct: 286 HRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAK 345
Query: 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
EDA +F ++ + W I ++G + F+EM K +S T ++V
Sbjct: 346 CNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTV 405
Query: 225 LKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
+ +C + D G+++H +V+ G D +V LVDMYGKC L A+ VFE I +K
Sbjct: 406 ISSCARLLDLER-GKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQI-QRK 463
Query: 285 NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
N+ SWN+M+ GY G + M GI+ + ++ + +ACS
Sbjct: 464 NVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACS 511
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 78/253 (30%), Positives = 123/253 (48%), Gaps = 19/253 (7%)
Query: 36 IRKRVNIKPTLLFLNRLLL-MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQ 94
IR RV +F+N L+ ++ CG + +A +F MP + SW VMI GYV V Y
Sbjct: 527 IRNRVEAD---IFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYL 583
Query: 95 ECITLFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNIS 153
E + +F +M RK G V P A VL AC +E GK++H + + N
Sbjct: 584 EALVIFTDM--RKAG----VKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEV 637
Query: 154 LTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRER 213
+ G+L++ Y K +++A +F+QL + V WT+ I G + F++M +
Sbjct: 638 VMGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYGSHGQAFEALKLFEKMQQSD 697
Query: 214 IKKNSYTFSSVLKAC---GGVDDDGNCGRQMHANIVKIGLESD-EYVQCGLVDMYGKCRL 269
K + TF ++L AC G VD+ QM I + G + E+ C L+D+ G+
Sbjct: 698 AKPDKVTFLAILSACSHAGLVDEGCYYFNQM---IAEYGFKPAVEHYSC-LIDLLGRVGR 753
Query: 270 LRDAERVFELIVD 282
LR+A + + D
Sbjct: 754 LREAYEILQRTPD 766
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 100/202 (49%), Gaps = 4/202 (1%)
Query: 135 LGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH-NTVVWTAKIVNN 193
LGK +H + LG NI+L SLIN Y + A VF ++ + +W +
Sbjct: 213 LGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVFQTIENPLDITLWNGLMAAC 272
Query: 194 CREGHFHQVFNDFKEMGR-ERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLES 252
+ F + F + +K +++T+ SVLKAC G+ G G+ +H +++K G
Sbjct: 273 TKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGY-GKMVHTHVIKSGFAM 331
Query: 253 DEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLM 312
D V V MY KC + DA ++F+ + ++++ASWN ++ Y ++G +A + M
Sbjct: 332 DVVVMSSAVGMYAKCNVFEDAIKLFDEM-PERDVASWNNVISCYYQDGQPEKALELFEEM 390
Query: 313 KASGIQIQESLINDLRIACSSI 334
K SG + + + +C+ +
Sbjct: 391 KVSGFKPDSVTLTTVISSCARL 412
>gi|15221566|ref|NP_177059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75333633|sp|Q9CAA8.1|PP108_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g68930
gi|12323213|gb|AAG51585.1|AC011665_6 hypothetical protein [Arabidopsis thaliana]
gi|332196743|gb|AEE34864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 743
Score = 144 bits (362), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 104/363 (28%), Positives = 161/363 (44%), Gaps = 42/363 (11%)
Query: 5 CLPIT-TDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLD 63
LP T +Y ++ K S A + + I + P L N LLL + G +
Sbjct: 35 ALPYPETFLYNNIVHAYALMKSSTYARRVFDRIPQ-----PNLFSWNNLLLAYSKAGLIS 89
Query: 64 TARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCV 123
F+++P RD +W V+I GY + + MM+ ++ V ++ +
Sbjct: 90 EMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRV----TLMTM 145
Query: 124 LKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNT 183
LK ++ LGKQ+HG + KLG + + L+ Y C+ DA VF L NT
Sbjct: 146 LKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNT 205
Query: 184 VV------------------------------WTAKIVNNCREGHFHQVFNDFKEMGRER 213
V+ W A I + G + F+EM +
Sbjct: 206 VMYNSLMGGLLACGMIEDALQLFRGMEKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQG 265
Query: 214 IKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDA 273
+K + Y F SVL ACGG+ N G+Q+HA I++ + YV L+DMY KC+ L A
Sbjct: 266 LKMDQYPFGSVLPACGGLGAI-NEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYA 324
Query: 274 ERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSS 333
+ VF+ + +KN+ SW AM+VGY + G EA K M+ SGI + AC++
Sbjct: 325 KTVFDRM-KQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACAN 383
Query: 334 ISA 336
+S+
Sbjct: 384 VSS 386
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 86/283 (30%), Positives = 131/283 (46%), Gaps = 8/283 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ ++CG ++ A QLF M +D SWA MI G +E I F EM + +G
Sbjct: 209 NSLMGGLLACGMIEDALQLFRGME-KDSVSWAAMIKGLAQNGLAKEAIECFREM--KVQG 265
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ +P VL AC + GKQ+H + + +I + +LI+ Y K +CL
Sbjct: 266 LKMDQYP---FGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLH 322
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A VF ++K+ N V WTA +V + G + F +M R I + YT + AC
Sbjct: 323 YAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACA 382
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
V G Q H + GL V LV +YGKC + D+ R+F + + ++ SW
Sbjct: 383 NVSSLEE-GSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEM-NVRDAVSW 440
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
AM+ Y + G VE + M G++ + + ACS
Sbjct: 441 TAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACS 483
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/258 (22%), Positives = 117/258 (45%), Gaps = 11/258 (4%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R N + + + L+ M+ C L A+ +FD M ++ SW M+VGY +E +
Sbjct: 298 RTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVK 357
Query: 99 LFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGS 157
+F +M + + P + + + AC ++E G Q HG G ++++ S
Sbjct: 358 IFLDMQRSG------IDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNS 411
Query: 158 LINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKN 217
L+ YGK ++D+ +F+++ + V WTA + + G + F +M + +K +
Sbjct: 412 LVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPD 471
Query: 218 SYTFSSVLKAC--GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAER 275
T + V+ AC G+ + G ++ + I + S + C ++D++ + L +A R
Sbjct: 472 GVTLTGVISACSRAGLVEKGQRYFKLMTSEYGI-VPSIGHYSC-MIDLFSRSGRLEEAMR 529
Query: 276 VFELIVDKKNIASWNAML 293
+ + W +L
Sbjct: 530 FINGMPFPPDAIGWTTLL 547
>gi|225436612|ref|XP_002275537.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27110-like [Vitis vinifera]
Length = 694
Score = 143 bits (361), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 144/281 (51%), Gaps = 7/281 (2%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+ C + A +LFDEMP RD SW +I Y ++ + LF EM + G
Sbjct: 150 MYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEM--KVSG---FK 204
Query: 115 FPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFV 174
+ + V+ +C +++E GK++H L + G + + ++ +L++ YGK CLE A V
Sbjct: 205 PDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEV 264
Query: 175 FSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDD 234
F Q++R N V W + I +G F+ M E I+ T SS+L AC +
Sbjct: 265 FEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSR-SVN 323
Query: 235 GNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLV 294
G+ +H I++ +E+D +V L+D+Y KC + AE VF+ + K N+ SWN M+
Sbjct: 324 LQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNM-PKTNVVSWNVMIS 382
Query: 295 GYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
GY++ G Y+EA M+ +G++ + ACS ++
Sbjct: 383 GYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLA 423
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/281 (28%), Positives = 141/281 (50%), Gaps = 7/281 (2%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ CG L+ A+++F+++ ++ SW MI GY D + CI LF M +
Sbjct: 248 LVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPT 307
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
L + +L AC ++N++LGK +HG + + +I + SLI+ Y K + A
Sbjct: 308 LTTLSS-----ILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSA 362
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
+ VF + + N V W I + G + + F +M + +K ++ TF+SVL AC +
Sbjct: 363 ENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQL 422
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
G+++H I++ LE +E V L+DMY KC + +A +F + +++ SW +
Sbjct: 423 AVLEK-GKEIHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQL-PERDFVSWTS 480
Query: 292 MLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
M+ Y +G EA K M+ S + + + ACS
Sbjct: 481 MIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACS 521
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/288 (28%), Positives = 134/288 (46%), Gaps = 19/288 (6%)
Query: 52 LLLMHVSCGQLDTARQLFD--EMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
L+ ++ SC +A+ +F E PL D W ++ + E + +F
Sbjct: 44 LINLYFSCHLFQSAKLVFQTIENPL-DITLWNGLMAACTKNFIFIEGLEVF--------- 93
Query: 110 HMLLVFP-----AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
H LL FP A+ VLKAC + GK VH + K G + ++ + S + Y K
Sbjct: 94 HRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAK 153
Query: 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
EDA +F ++ + W I ++G + F+EM K +S T ++V
Sbjct: 154 CNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTV 213
Query: 225 LKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
+ +C + D G+++H +V+ G D +V LVDMYGKC L A+ VFE I +K
Sbjct: 214 ISSCARLLDLER-GKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQI-QRK 271
Query: 285 NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
N+ SWN+M+ GY G + M GI+ + ++ + +ACS
Sbjct: 272 NVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACS 319
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 78/253 (30%), Positives = 123/253 (48%), Gaps = 19/253 (7%)
Query: 36 IRKRVNIKPTLLFLNRLLL-MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQ 94
IR RV +F+N L+ ++ CG + +A +F MP + SW VMI GYV V Y
Sbjct: 335 IRNRVEAD---IFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYL 391
Query: 95 ECITLFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNIS 153
E + +F +M RK G V P A VL AC +E GK++H + + N
Sbjct: 392 EALVIFTDM--RKAG----VKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEV 445
Query: 154 LTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRER 213
+ G+L++ Y K +++A +F+QL + V WT+ I G + F++M +
Sbjct: 446 VMGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYGSHGQAFEALKLFEKMQQSD 505
Query: 214 IKKNSYTFSSVLKAC---GGVDDDGNCGRQMHANIVKIGLESD-EYVQCGLVDMYGKCRL 269
K + TF ++L AC G VD+ QM I + G + E+ C L+D+ G+
Sbjct: 506 AKPDKVTFLAILSACSHAGLVDEGCYYFNQM---IAEYGFKPAVEHYSC-LIDLLGRVGR 561
Query: 270 LRDAERVFELIVD 282
LR+A + + D
Sbjct: 562 LREAYEILQRTPD 574
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 109/217 (50%), Gaps = 4/217 (1%)
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
++ +LK C+ + ++ GK +H + LG NI+L SLIN Y + A VF ++
Sbjct: 6 LLSLLKTCIDSKYLKQGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVFQTIE 65
Query: 180 RH-NTVVWTAKIVNNCREGHFHQVFNDFKEMGR-ERIKKNSYTFSSVLKACGGVDDDGNC 237
+ +W + + F + F + +K +++T+ SVLKAC G+ G
Sbjct: 66 NPLDITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGY- 124
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYI 297
G+ +H +++K G D V V MY KC + DA ++F+ + ++++ASWN ++ Y
Sbjct: 125 GKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEM-PERDVASWNNVISCYY 183
Query: 298 RNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
++G +A + MK SG + + + +C+ +
Sbjct: 184 QDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARL 220
>gi|255562657|ref|XP_002522334.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538412|gb|EEF40018.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 507
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 100/355 (28%), Positives = 162/355 (45%), Gaps = 38/355 (10%)
Query: 9 TTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSC--------- 59
+ +Y+ LI+ C + ++ +HI K P L+ NRLL M+ C
Sbjct: 79 SPSIYSSLIQSCLKNRALEVGKKVHDHI-KLSGFIPGLVISNRLLDMYAKCNDLVDAQKL 137
Query: 60 ----------------------GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECI 97
G L AR+LFD MP RD SW MI GYV E +
Sbjct: 138 FEEMGERDLCSWNVLISGCAKMGLLKEARKLFDTMPERDNFSWTAMISGYVRHNRPHEAL 197
Query: 98 TLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGS 157
L+ M K + L + + VL A + +GK++HG + + G + + +
Sbjct: 198 ELYRLMKKCEN----LTSNKFTVSSVLAAAAAIPCLRIGKEIHGYIMRTGLDSDEVVWSA 253
Query: 158 LINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKN 217
L + YGK +E+A +F ++ + V WTA I +G + F F E+ R IK N
Sbjct: 254 LSDMYGKCGSIEEARHIFDKMVNRDVVTWTAMIDRYFEDGRREEGFELFAELLRSGIKPN 313
Query: 218 SYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVF 277
+TF+ VL AC + +G G+Q+H ++ + + + LV MY KC + +AERVF
Sbjct: 314 DFTFAGVLNACADLGVEG-IGKQVHGHMTRADFDPFSFAASALVHMYSKCGNMVNAERVF 372
Query: 278 ELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+ + ++ SW +++ GY +NG EA ++ L+ SG + + AC+
Sbjct: 373 RGM-PQPDLVSWTSLIAGYAQNGHPDEALQYFELLLKSGTRPDHITFVGVLSACA 426
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 72/287 (25%), Positives = 127/287 (44%), Gaps = 46/287 (16%)
Query: 93 YQECITLFAEMMKRKKGHMLL-----VFPAWIIVCVLKACVCTMNMELGKQVH------- 140
++E I L E + K+ +L P+ I ++++C+ +E+GK+VH
Sbjct: 52 FKEAIALLCEQNRLKEAIQVLNQIDRPSPS-IYSSLIQSCLKNRALEVGKKVHDHIKLSG 110
Query: 141 ---GL---------------------LFKLGSSRNISLTGSLINFYGKFRCLEDADFVFS 176
GL LF+ R++ LI+ K L++A +F
Sbjct: 111 FIPGLVISNRLLDMYAKCNDLVDAQKLFEEMGERDLCSWNVLISGCAKMGLLKEARKLFD 170
Query: 177 QLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGR-ERIKKNSYTFSSVLKACGGVDDDG 235
+ + WTA I R H+ ++ M + E + N +T SSVL A +
Sbjct: 171 TMPERDNFSWTAMISGYVRHNRPHEALELYRLMKKCENLTSNKFTVSSVLAAAAAIP--- 227
Query: 236 NC---GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAM 292
C G+++H I++ GL+SDE V L DMYGKC + +A +F+ +V++ ++ +W AM
Sbjct: 228 -CLRIGKEIHGYIMRTGLDSDEVVWSALSDMYGKCGSIEEARHIFDKMVNR-DVVTWTAM 285
Query: 293 LVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKI 339
+ Y +G E + + SGI+ + + AC+ + I
Sbjct: 286 IDRYFEDGRREEGFELFAELLRSGIKPNDFTFAGVLNACADLGVEGI 332
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 87/197 (44%), Gaps = 17/197 (8%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+ CG ++ AR +FD+M RD +W MI Y + +E LFAE+++
Sbjct: 257 MYGKCGSIEEARHIFDKMVNRDVVTWTAMIDRYFEDGRREEGFELFAELLRSGIKPNDFT 316
Query: 115 FPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFV 174
F VL AC +GKQVHG + + +L++ Y K + +A+ V
Sbjct: 317 FAG-----VLNACADLGVEGIGKQVHGHMTRADFDPFSFAASALVHMYSKCGNMVNAERV 371
Query: 175 FSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDD 234
F + + + V WT+ I + GH + F+ + + + + TF VL AC
Sbjct: 372 FRGMPQPDLVSWTSLIAGYAQNGHPDEALQYFELLLKSGTRPDHITFVGVLSACA----- 426
Query: 235 GNCGRQMHANIVKIGLE 251
HA +V GL+
Sbjct: 427 -------HAGLVDKGLQ 436
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 63/129 (48%), Gaps = 11/129 (8%)
Query: 194 CREGHFHQVFNDFKEMGR--------ERIKKNSYT-FSSVLKACGGVDDDGNCGRQMHAN 244
C EG F + E R +I + S + +SS++++C + G+++H +
Sbjct: 47 CNEGRFKEAIALLCEQNRLKEAIQVLNQIDRPSPSIYSSLIQSCLK-NRALEVGKKVHDH 105
Query: 245 IVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVE 304
I G + L+DMY KC L DA+++FE + ++++ SWN ++ G + GL E
Sbjct: 106 IKLSGFIPGLVISNRLLDMYAKCNDLVDAQKLFEEM-GERDLCSWNVLISGCAKMGLLKE 164
Query: 305 ATKFLYLMK 313
A K M
Sbjct: 165 ARKLFDTMP 173
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 46/109 (42%), Gaps = 6/109 (5%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R + P + L+ M+ CG + A ++F MP D SW +I GY E +
Sbjct: 342 RADFDPFSFAASALVHMYSKCGNMVNAERVFRGMPQPDLVSWTSLIAGYAQNGHPDEALQ 401
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQ-VHGLLFKL 146
F ++K + F V VL AC ++ G Q H ++ KL
Sbjct: 402 YFELLLKSGTRPDHITF-----VGVLSACAHAGLVDKGLQYFHSIMDKL 445
>gi|449436591|ref|XP_004136076.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
chloroplastic-like [Cucumis sativus]
Length = 878
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 112/332 (33%), Positives = 160/332 (48%), Gaps = 13/332 (3%)
Query: 8 ITTDMYT--CLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTA 65
I ++YT ++K C D A E+ H+ R + + N L+ M+V CG + A
Sbjct: 194 IRPNVYTFPSVLKTCAGVSDIARGKEIHAHV-IRFGFESDVDVGNALITMYVKCGDISNA 252
Query: 66 RQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI-IVCVL 124
R LFD+MP RD SW MI GY + E + LF+ M + L V P I + V
Sbjct: 253 RMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRE------LSVDPDLITMTTVA 306
Query: 125 KACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTV 184
AC N LG+ VHG + K +IS+ SLI Y LE+A+ VFS+++ + V
Sbjct: 307 SACELLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVV 366
Query: 185 VWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHAN 244
WTA I + + +K M E I + T SVL AC + + G ++H
Sbjct: 367 SWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHL-DLGIRLHEI 425
Query: 245 IVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVE 304
+K GL S V L+DMY KC+ + +A VF I KN+ SW ++++G N E
Sbjct: 426 AIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNI-SGKNVVSWTSLILGLRINNRSFE 484
Query: 305 ATKFLYLMKASGIQIQESLINDLRIACSSISA 336
A F MK S +LI+ L AC+ I A
Sbjct: 485 ALLFFRQMKESMKPNSVTLISVLS-ACARIGA 515
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 83/337 (24%), Positives = 155/337 (45%), Gaps = 14/337 (4%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQK---DSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHV 57
M L + + D Y L++ C +++ + + +EL++ + + ++ N LL M V
Sbjct: 88 MLELRIEVEEDAYIALLRLCEWRRAPDEGSRVYELVSSSKSCLCVR----LGNALLSMFV 143
Query: 58 SCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPA 117
G L A +F +M RD SW V++ GY + E + L+ M+ + + FP+
Sbjct: 144 RFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRPNVYTFPS 203
Query: 118 WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQ 177
VLK C ++ GK++H + + G ++ + +LI Y K + +A +F +
Sbjct: 204 -----VLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDK 258
Query: 178 LKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC 237
+ + + + W A I G + F M + + T ++V AC +D++
Sbjct: 259 MPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNE-RL 317
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYI 297
GR +H +VK D + L+ MY L +AE VF + + K++ SW AM+ +
Sbjct: 318 GRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRM-ESKDVVSWTAMIASLV 376
Query: 298 RNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
+ L +A + +M+ GI E + + AC+ I
Sbjct: 377 SHKLPFKAVETYKMMELEGILPDEITLVSVLSACACI 413
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 82/284 (28%), Positives = 140/284 (49%), Gaps = 11/284 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ S G+L+ A +F M +D SW MI V + + + +MM+ +
Sbjct: 338 NSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETY-KMMELEG- 395
Query: 110 HMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+ P I +V VL AC C +++LG ++H + K G ++ ++ SLI+ Y K +C+
Sbjct: 396 ----ILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCV 451
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
++A VF + N V WT+ I+ + F++M +E +K NS T SVL AC
Sbjct: 452 DNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQM-KESMKPNSVTLISVLSAC 510
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
+ G+++HA+ ++ G+ D ++ ++DMY +C R + + KK++ +
Sbjct: 511 ARIGALMR-GKEIHAHALRTGVGFDGFLPNAILDMYVRCG--RKVPALNQFNSQKKDVTA 567
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
WN +L GY + G A + M I E L ACS
Sbjct: 568 WNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLCACS 611
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/267 (21%), Positives = 112/267 (41%), Gaps = 19/267 (7%)
Query: 33 LNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVAD 92
L+ I + + ++ N L+ M+ C +D A ++F + ++ SW +I+G
Sbjct: 422 LHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNR 481
Query: 93 YQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNI 152
E + F +M + K + + ++ VL AC + GK++H + G +
Sbjct: 482 SFEALLFFRQMKESMKPNSV------TLISVLSACARIGALMRGKEIHAHALRTGVGFDG 535
Query: 153 SLTGSLINFYGKFRCLEDADFV--FSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMG 210
L ++++ Y RC + F+ K+ + W + ++G F +M
Sbjct: 536 FLPNAILDMY--VRCGRKVPALNQFNSQKK-DVTAWNILLTGYAQQGQAKLAVELFDKML 592
Query: 211 RERIKKNSYTFSSVLKACG--GVDDDGNCGRQMHANIVK--IGLESDEYVQCGLVDMYGK 266
I + TF S+L AC G+ +G + NI+K L + +VD+ G+
Sbjct: 593 ELEIHPDEITFISLLCACSKSGMVTEG----LEYFNIMKNKYNLTPNLKHYACVVDILGR 648
Query: 267 CRLLRDAERVFELIVDKKNIASWNAML 293
L DA + + + + A W A+L
Sbjct: 649 AGQLDDAYDFIQDMPIRPDAAIWGALL 675
>gi|449491114|ref|XP_004158804.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g15510, chloroplastic-like [Cucumis sativus]
Length = 878
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 112/332 (33%), Positives = 160/332 (48%), Gaps = 13/332 (3%)
Query: 8 ITTDMYT--CLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTA 65
I ++YT ++K C D A E+ H+ R + + N L+ M+V CG + A
Sbjct: 194 IRPNVYTFPSVLKTCAGVSDIARGKEIHAHV-IRFGFESDVDVGNALITMYVKCGDISNA 252
Query: 66 RQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI-IVCVL 124
R LFD+MP RD SW MI GY + E + LF+ M + L V P I + V
Sbjct: 253 RMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRE------LSVDPDLITMTTVA 306
Query: 125 KACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTV 184
AC N LG+ VHG + K +IS+ SLI Y LE+A+ VFS+++ + V
Sbjct: 307 SACELLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVV 366
Query: 185 VWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHAN 244
WTA I + + +K M E I + T SVL AC + + G ++H
Sbjct: 367 SWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHL-DLGIRLHEI 425
Query: 245 IVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVE 304
+K GL S V L+DMY KC+ + +A VF I KN+ SW ++++G N E
Sbjct: 426 AIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNI-SGKNVVSWTSLILGLRINNRSFE 484
Query: 305 ATKFLYLMKASGIQIQESLINDLRIACSSISA 336
A F MK S +LI+ L AC+ I A
Sbjct: 485 ALLFFRQMKESMKPNSVTLISVLS-ACARIGA 515
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 83/337 (24%), Positives = 155/337 (45%), Gaps = 14/337 (4%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQK---DSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHV 57
M L + + D Y L++ C +++ + + +EL++ + + ++ N LL M V
Sbjct: 88 MLELRIEVEEDAYIALLRLCEWRRAPDEGSRVYELVSSSKSCLCVR----LGNALLSMFV 143
Query: 58 SCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPA 117
G L A +F +M RD SW V++ GY + E + L+ M+ + + FP+
Sbjct: 144 RFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRPNVYTFPS 203
Query: 118 WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQ 177
VLK C ++ GK++H + + G ++ + +LI Y K + +A +F +
Sbjct: 204 -----VLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDK 258
Query: 178 LKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC 237
+ + + + W A I G + F M + + T ++V AC +D++
Sbjct: 259 MPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNE-RL 317
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYI 297
GR +H +VK D + L+ MY L +AE VF + + K++ SW AM+ +
Sbjct: 318 GRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRM-ESKDVVSWTAMIASLV 376
Query: 298 RNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
+ L +A + +M+ GI E + + AC+ I
Sbjct: 377 SHKLPFKAVETYKMMELEGILPDEITLVSVLSACACI 413
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 82/284 (28%), Positives = 140/284 (49%), Gaps = 11/284 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ S G+L+ A +F M +D SW MI V + + + +MM+ +
Sbjct: 338 NSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETY-KMMELEG- 395
Query: 110 HMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+ P I +V VL AC C +++LG ++H + K G ++ ++ SLI+ Y K +C+
Sbjct: 396 ----ILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCV 451
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
++A VF + N V WT+ I+ + F++M +E +K NS T SVL AC
Sbjct: 452 DNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQM-KESMKPNSVTLISVLSAC 510
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
+ G+++HA+ ++ G+ D ++ ++DMY +C R + + KK++ +
Sbjct: 511 ARIGALMR-GKEIHAHALRTGVGFDGFLPNAILDMYVRCG--RKVPALNQFNSQKKDVTA 567
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
WN +L GY + G A + M I E L ACS
Sbjct: 568 WNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLCACS 611
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 58/267 (21%), Positives = 112/267 (41%), Gaps = 19/267 (7%)
Query: 33 LNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVAD 92
L+ I + + ++ N L+ M+ C +D A ++F + ++ SW +I+G
Sbjct: 422 LHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNR 481
Query: 93 YQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNI 152
E + F +M + K + + ++ VL AC + GK++H + G +
Sbjct: 482 SFEALLFFRQMKESMKPNSV------TLISVLSACARIGALMRGKEIHAHALRTGVGFDG 535
Query: 153 SLTGSLINFYGKFRCLEDADFV--FSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMG 210
L ++++ Y RC + F+ K+ + W + ++G F +M
Sbjct: 536 FLPNAILDMY--VRCGRKVPALNQFNSQKK-DVTAWNILLTGYAQQGQAKLAVELFDKML 592
Query: 211 RERIKKNSYTFSSVLKACG--GVDDDGNCGRQMHANIVK--IGLESDEYVQCGLVDMYGK 266
I + TF S+L AC G+ +G + NI+K L + +VD+ G+
Sbjct: 593 ELEIHPDEITFISLLCACSKSGMVTEG----LEYFNIMKNKYNLTPNLKHYACVVDILGR 648
Query: 267 CRLLRDAERVFELIVDKKNIASWNAML 293
L DA + + + + A W A+L
Sbjct: 649 AGQLDDAYDFIQDMPIRPDAAIWGALL 675
>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18485-like [Vitis vinifera]
Length = 881
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 100/337 (29%), Positives = 165/337 (48%), Gaps = 15/337 (4%)
Query: 2 DNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQ 61
DN LP C+IK C D G ++++ + ++++ + N L+ M+ CG
Sbjct: 100 DNFTLP-------CVIKACAGLLD-LGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGL 151
Query: 62 LDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIV 121
++ A ++F+ MP R+ SW +I G+ + QE F EM+ G V +V
Sbjct: 152 VEEAVKVFEHMPERNLVSWNSIICGFSENGFLQESFNAFREMLV---GEESFVPDVATLV 208
Query: 122 CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH 181
VL C ++E G VHGL KLG + + + SLI+ Y K R L +A +F + +
Sbjct: 209 TVLPVCAGEEDIEKGMAVHGLAVKLGLNEELMVNNSLIDMYSKCRFLSEAQLLFDKNDKK 268
Query: 182 NTVVWTAKIVNNCREGHFHQVFNDFKEMGRE--RIKKNSYTFSSVLKACGGVDDDGNCGR 239
N V W + I RE + F ++M E ++K + +T +VL C + + +
Sbjct: 269 NIVSWNSMIGGYAREEDVCRTFYLLQKMQTEDAKMKADEFTILNVLPVCLERSELQSL-K 327
Query: 240 QMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRN 299
++H + GL+S+E V + Y +C L +ERVF+L+ D K ++SWNA+L GY +N
Sbjct: 328 ELHGYSWRHGLQSNELVANAFIAAYTRCGALCSSERVFDLM-DTKTVSSWNALLCGYAQN 386
Query: 300 GLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+A M SG+ I L +ACS + +
Sbjct: 387 SDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKS 423
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 84/285 (29%), Positives = 143/285 (50%), Gaps = 8/285 (2%)
Query: 16 LIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLR 75
L++ C +KD L + + R++ M+ CG +R +FD++ +
Sbjct: 4 LLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRK 63
Query: 76 DFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMEL 135
+ W ++ Y +++ +++F+E++ + H F + CV+KAC +++ L
Sbjct: 64 NLFQWNAIVSAYTRNELFEDAMSIFSELISVTE-HKPDNF---TLPCVIKACAGLLDLGL 119
Query: 136 GKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCR 195
G+ +HG+ K+ ++ + +LI YGK +E+A VF + N V W + I
Sbjct: 120 GQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSE 179
Query: 196 EGHFHQVFNDFKEM--GRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESD 253
G + FN F+EM G E + T +VL C G ++D G +H VK+GL +
Sbjct: 180 NGFLQESFNAFREMLVGEESFVPDVATLVTVLPVCAG-EEDIEKGMAVHGLAVKLGLNEE 238
Query: 254 EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIR 298
V L+DMY KCR L +A+ +F+ DKKNI SWN+M+ GY R
Sbjct: 239 LMVNNSLIDMYSKCRFLSEAQLLFDK-NDKKNIVSWNSMIGGYAR 282
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 72/256 (28%), Positives = 116/256 (45%), Gaps = 33/256 (12%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL +++ CG+ A+ LFD M R SW VMI GY E I LF +M+
Sbjct: 449 LLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDG---- 504
Query: 112 LLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
+ P I I+CV AC + LGK++H K + +I ++ S+I+ Y K C+
Sbjct: 505 --IQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGL 562
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
+ +F +L+ + W I G + F++M R +K + +TF+ +L AC
Sbjct: 563 SQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACS- 621
Query: 231 VDDDGNCGRQMHANIVKIGLE-------------SDEYVQCGLVDMYGKCRLLRDAERVF 277
HA +V+ GLE E+ C +VDM G+ + DA R+
Sbjct: 622 -----------HAGLVEDGLEYFNQMLNLHNIEPKLEHYTC-VVDMLGRAGRIDDALRLI 669
Query: 278 ELIVDKKNIASWNAML 293
E + + W+++L
Sbjct: 670 EEMPGDPDSRIWSSLL 685
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 70/298 (23%), Positives = 138/298 (46%), Gaps = 15/298 (5%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R ++ L N + + CG L ++ ++FD M + +SW ++ GY +D ++ +
Sbjct: 335 RHGLQSNELVANAFIAAYTRCGALCSSERVFDLMDTKTVSSWNALLCGYAQNSDPRKALD 394
Query: 99 LFAEMMKRKKGHMLLVFPAWIIV-CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGS 157
L+ +M + P W + +L AC ++ G+++HG + G + + + S
Sbjct: 395 LYLQMTDSG------LDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGIS 448
Query: 158 LINFY---GKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERI 214
L++ Y GK A +F ++ + V W I + G + N F++M + I
Sbjct: 449 LLSLYICCGKPFA---AQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGI 505
Query: 215 KKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAE 274
+ V AC + G+++H +K L D +V ++DMY K + ++
Sbjct: 506 QPYEIAIMCVCGACSQLSAL-RLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQ 564
Query: 275 RVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
R+F+ + +K++ASWN ++ GY +G EA + M G++ + + +ACS
Sbjct: 565 RIFDRL-REKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACS 621
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 74/301 (24%), Positives = 138/301 (45%), Gaps = 5/301 (1%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
++ + L+ N L+ M+ C L A+ LFD+ ++ SW MI GY D C T
Sbjct: 232 KLGLNEELMVNNSLIDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGGYAREEDV--CRT 289
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
+ + K + + + I+ VL C+ ++ K++HG ++ G N + +
Sbjct: 290 FYL-LQKMQTEDAKMKADEFTILNVLPVCLERSELQSLKELHGYSWRHGLQSNELVANAF 348
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
I Y + L ++ VF + W A + + + + + +M + +
Sbjct: 349 IAAYTRCGALCSSERVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDW 408
Query: 219 YTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE 278
+T S+L AC + + G ++H ++ GL D ++ L+ +Y C A+ +F+
Sbjct: 409 FTIGSLLLACSRMKSL-HYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFD 467
Query: 279 LIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASK 338
+ + +++ SWN M+ GY +NGL EA M + GIQ E I + ACS +SA +
Sbjct: 468 GM-EHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALR 526
Query: 339 I 339
+
Sbjct: 527 L 527
Score = 41.2 bits (95), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 49/234 (20%), Positives = 106/234 (45%), Gaps = 19/234 (8%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
+ ++ + + ++ M+ G + ++++FD + +D SW V+I GY +E +
Sbjct: 537 KAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALE 596
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGS-SRNISLTGS 157
LF +M++ + L + +L AC +E G + + L + +
Sbjct: 597 LFEKMLR-----LGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTC 651
Query: 158 LINFYGKFRCLEDADFVFSQLK-RHNTVVWTAKIVNNCR----EGHFHQVFNDFKEMGRE 212
+++ G+ ++DA + ++ ++ +W++ ++++CR G +V N E+ E
Sbjct: 652 VVDMLGRAGRIDDALRLIEEMPGDPDSRIWSS-LLSSCRIHGNLGLGEKVANKLLELEPE 710
Query: 213 RIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGK 266
K +Y S L A G DD R++ + IGL+ D C +++ GK
Sbjct: 711 --KPENYVLISNLFAGSGKWDD---VRRVRGRMKDIGLQKD--AGCSWIEVGGK 757
Score = 38.9 bits (89), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 52/109 (47%), Gaps = 7/109 (6%)
Query: 224 VLKACGGVDDDGNCGRQMHANIVKIGLESDEYV-QCGLVDMYGKCRLLRDAERVFELIVD 282
+L+ACG D GR++H + +++V ++ MY C D+ VF+ +
Sbjct: 4 LLQACGQRKDI-EVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKL-R 61
Query: 283 KKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
+KN+ WNA++ Y RN L+ +A + I + E ++ + C
Sbjct: 62 RKNLFQWNAIVSAYTRNELFEDAMSIFSEL----ISVTEHKPDNFTLPC 106
>gi|358343602|ref|XP_003635889.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|358344096|ref|XP_003636129.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355501824|gb|AES83027.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355502064|gb|AES83267.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 662
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 103/326 (31%), Positives = 162/326 (49%), Gaps = 14/326 (4%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
YT LI +CT +K L HI K ++ F ++L+ ++ C + AR+LFDEM
Sbjct: 4 YTSLIAQCTNKKSLTTLKSLHTHILKSGSLFS--FFGHKLIDGYIKCSVITEARKLFDEM 61
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTM 131
P R +W MI +V +E I L++ M+ V P A+ + KA
Sbjct: 62 PNRHIVTWNSMISSHVSRGKTKEAIELYSNMLFEG------VLPDAYTFSAIFKAFSEMG 115
Query: 132 NMELGKQVHGLLFKLG--SSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAK 189
G++ HGL LG S TG +++ Y KF ++DA FVF ++ + V++TA
Sbjct: 116 VSREGQKAHGLAVVLGFEVSDGFVATG-IVDMYAKFGKMKDARFVFDRVLDKDVVLFTAL 174
Query: 190 IVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIG 249
IV + G + F++M RIK N YT +SVL +CG + D N G+ +H +VK G
Sbjct: 175 IVGYNQHGLDGEALEVFEDMVGSRIKPNEYTLASVLVSCGNLGDLVN-GKLIHGLVVKYG 233
Query: 250 LESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFL 309
LES Q L+ MY KC ++ D+ +VF + ++ +W + +VG ++NG A
Sbjct: 234 LESVVASQTSLLTMYSKCNMVEDSIKVFNSLAYASHV-TWTSFIVGLVQNGREEVALSMF 292
Query: 310 YLMKASGIQIQESLINDLRIACSSIS 335
M I ++ + ACSS++
Sbjct: 293 REMMRCSISPNHFTLSSILHACSSLA 318
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 81/280 (28%), Positives = 140/280 (50%), Gaps = 9/280 (3%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+ G++ AR +FD + +D + +IVGY E + +F +M+ + +
Sbjct: 146 MYAKFGKMKDARFVFDRVLDKDVVLFTALIVGYNQHGLDGEALEVFEDMVGSR------I 199
Query: 115 FP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADF 173
P + + VL +C ++ GK +HGL+ K G ++ SL+ Y K +ED+
Sbjct: 200 KPNEYTLASVLVSCGNLGDLVNGKLIHGLVVKYGLESVVASQTSLLTMYSKCNMVEDSIK 259
Query: 174 VFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDD 233
VF+ L + V WT+ IV + G + F+EM R I N +T SS+L AC +
Sbjct: 260 VFNSLAYASHVTWTSFIVGLVQNGREEVALSMFREMMRCSISPNHFTLSSILHACSSLAM 319
Query: 234 DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
G Q+HA VK+G++ +++V L+ +YGKC + A VF+ + + +I S N M+
Sbjct: 320 L-EAGEQIHAVTVKLGVDGNKFVDAALIHLYGKCGNVEKARSVFDSLTE-LDIVSINTMI 377
Query: 294 VGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSS 333
Y +NG EA + +K G++ + +AC++
Sbjct: 378 YAYAQNGFGHEALELFERLKKLGLEPNVVTFISILLACNN 417
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 66/148 (44%), Gaps = 13/148 (8%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ ++ CG ++ AR +FD + D S MI Y E + LF + K
Sbjct: 345 LIHLYGKCGNVEKARSVFDSLTELDIVSINTMIYAYAQNGFGHEALELFERLKKLGLEPN 404
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGS----LINFYGKFRC 167
++ F + +L AC +E G Q+ L + ++ +I LT +I+ G+ +
Sbjct: 405 VVTF-----ISILLACNNAGLVEEGCQIFSL---IRNNHSIELTRDHYTCMIDLLGRAKR 456
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCR 195
E+A + + K + + W ++N C+
Sbjct: 457 FEEATMLIEEGKNPDVIQWRT-LLNACK 483
>gi|225451187|ref|XP_002271063.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Vitis vinifera]
Length = 805
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 88/287 (30%), Positives = 142/287 (49%), Gaps = 7/287 (2%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
+L L + M+ G +++AR +F +MP R+ SW MI G V E LF +++
Sbjct: 266 ILVLTSFVDMYSKMGDIESARWVFYKMPTRNLVSWNAMISGCVRNGLVGESFDLFHRLVR 325
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
G F IV +L+ C T ++ GK +HG + S N+ L+ ++++ Y K
Sbjct: 326 SSGG-----FDLTTIVSLLQGCSQTASLATGKILHGCAIRSFES-NLILSTAIVDLYSKC 379
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
L+ A FVF+++K N + WTA +V + GH F +M E I NS TF S++
Sbjct: 380 GSLKQATFVFNRMKDRNVITWTAMLVGLAQNGHAEDALRLFAQMQEEGIAANSVTFVSLV 439
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
+C + GR +H ++ ++G D LVDMY KC + AER+F K+
Sbjct: 440 HSCAHLGSLKR-GRSIHGHLFRLGFAFDIVNMTALVDMYAKCGKINLAERIFSHGSISKD 498
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+ WN+M+ GY +G +A + M G++ ++ L ACS
Sbjct: 499 VVLWNSMITGYGMHGHGYQAVGIYHKMIEEGLKPNQTTFLSLLSACS 545
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 82/283 (28%), Positives = 135/283 (47%), Gaps = 10/283 (3%)
Query: 57 VSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP 116
V G++ A+++FD MP +D W +I GYV + LF EM H + P
Sbjct: 176 VKFGKIGEAQRVFDGMPNKDVVCWNSIIGGYVQAGCFDVAFQLFFEM------HGSGIKP 229
Query: 117 AWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVF 175
+ I + +++AC N++LGK +HG + LG +I + S ++ Y K +E A +VF
Sbjct: 230 SPITMTSLIQACGGIGNLKLGKCMHGYVLGLGLGNDILVLTSFVDMYSKMGDIESARWVF 289
Query: 176 SQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDG 235
++ N V W A I R G + F+ F + R + T S+L+ C
Sbjct: 290 YKMPTRNLVSWNAMISGCVRNGLVGESFDLFHRLVRSSGGFDLTTIVSLLQGCSQTASLA 349
Query: 236 NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
G+ +H ++ ES+ + +VD+Y KC L+ A VF + D+ N+ +W AMLVG
Sbjct: 350 T-GKILHGCAIR-SFESNLILSTAIVDLYSKCGSLKQATFVFNRMKDR-NVITWTAMLVG 406
Query: 296 YIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASK 338
+NG +A + M+ GI L +C+ + + K
Sbjct: 407 LAQNGHAEDALRLFAQMQEEGIAANSVTFVSLVHSCAHLGSLK 449
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 78/257 (30%), Positives = 126/257 (49%), Gaps = 8/257 (3%)
Query: 61 QLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWII 120
L+ AR +FD+ M+ GY+ Y+E + LF M R L +
Sbjct: 79 SLEAARYVFDQFFQPKGLLCNAMLCGYLQSGRYRETLELFGLMRSRN-----LEVDSCSC 133
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
LKAC +++ E+G ++ + G +N + S+I+F KF + +A VF +
Sbjct: 134 TFALKACASSLDYEMGMEIISSAVEKGMEKNRFVGSSMISFLVKFGKIGEAQRVFDGMPN 193
Query: 181 HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQ 240
+ V W + I + G F F F EM IK + T +S+++ACGG+ + G+
Sbjct: 194 KDVVCWNSIIGGYVQAGCFDVAFQLFFEMHGSGIKPSPITMTSLIQACGGIGNL-KLGKC 252
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
MH ++ +GL +D V VDMY K + A VF + +N+ SWNAM+ G +RNG
Sbjct: 253 MHGYVLGLGLGNDILVLTSFVDMYSKMGDIESARWVF-YKMPTRNLVSWNAMISGCVRNG 311
Query: 301 LYVEATKFLY-LMKASG 316
L E+ + L+++SG
Sbjct: 312 LVGESFDLFHRLVRSSG 328
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 63/268 (23%), Positives = 120/268 (44%), Gaps = 30/268 (11%)
Query: 41 NIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLF 100
+ + L+ ++ ++ CG L A +F+ M R+ +W M+VG ++ + LF
Sbjct: 361 SFESNLILSTAIVDLYSKCGSLKQATFVFNRMKDRNVITWTAMLVGLAQNGHAEDALRLF 420
Query: 101 AEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLIN 160
A+M + + F V ++ +C +++ G+ +HG LF+LG + +I +L++
Sbjct: 421 AQMQEEGIAANSVTF-----VSLVHSCAHLGSLKRGRSIHGHLFRLGFAFDIVNMTALVD 475
Query: 161 FYGKFRCLEDADFVFSQLK-RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSY 219
Y K + A+ +FS + V+W + I GH +Q + +M E +K N
Sbjct: 476 MYAKCGKINLAERIFSHGSISKDVVLWNSMITGYGMHGHGYQAVGIYHKMIEEGLKPNQT 535
Query: 220 TFSSVLKACGGVDDDGNCGRQMHANIVKIG------LESDEYVQ------CGLVDMYGKC 267
TF S+L AC H+ +V+ G +E D ++ LVD+ +
Sbjct: 536 TFLSLLSACS------------HSRLVEQGISLFNSMERDHNIRPIEKHYACLVDLLSRA 583
Query: 268 RLLRDAERVFELIVDKKNIASWNAMLVG 295
+A+ + E + + A A+L G
Sbjct: 584 GRFEEAQALIEKMPFQPGTAVLEALLSG 611
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Query: 239 RQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIR 298
+ HA I+ L +D++V LV Y R L A VF+ K + NAML GY++
Sbjct: 49 KSTHAQIITNSLSTDQFVATKLVKAYSDLRSLEAARYVFDQFFQPKGLLC-NAMLCGYLQ 107
Query: 299 NGLYVEATKFLYLMKASGIQIQESLINDLRIACSS 333
+G Y E + LM++ +++ AC+S
Sbjct: 108 SGRYRETLELFGLMRSRNLEVDSCSCTFALKACAS 142
>gi|147780613|emb|CAN69119.1| hypothetical protein VITISV_031846 [Vitis vinifera]
Length = 654
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 92/289 (31%), Positives = 141/289 (48%), Gaps = 11/289 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+ L+ M+ G AR++FD MP R+ SWA MI GY E + LF M + ++G
Sbjct: 147 SSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMISGYASQKLAAEALGLFRLMRREEEG 206
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
VF + VL A + GKQ+H + K G +S+ +L+ Y K L+
Sbjct: 207 ENEFVFTS-----VLSALTLPELVNNGKQIHCIAVKNGLLSIVSVGNALVTMYAKCGSLD 261
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
DA F N++ W+A I + G + F M I+ + +TF V+ AC
Sbjct: 262 DALQTFETSSDKNSITWSAMITGXAQSGDSDKALKLFSSMHLSGIRPSEFTFVGVINAC- 320
Query: 230 GVDDDGNC--GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
D G G+Q+H ++K+G ES YV LVDMY KC + DA + F+ + + +I
Sbjct: 321 --SDLGAAWEGKQVHDYLLKLGFESQIYVMTALVDMYAKCSSIVDARKGFDYL-QEPDIV 377
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
W +M+ GY++NG +A M+ GI E + + ACSS++A
Sbjct: 378 LWTSMIGGYVQNGENEDALSLYGRMEMEGILPNELTMASVLKACSSLAA 426
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 88/284 (30%), Positives = 133/284 (46%), Gaps = 9/284 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ CG LD A Q F+ ++ +W+ MI G D + + LF+ M
Sbjct: 248 NALVTMYAKCGSLDDALQTFETSSDKNSITWSAMITGXAQSGDSDKALKLFSSM------ 301
Query: 110 HMLLVFPA-WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
H+ + P+ + V V+ AC GKQVH L KLG I + +L++ Y K +
Sbjct: 302 HLSGIRPSEFTFVGVINACSDLGAAWEGKQVHDYLLKLGFESQIYVMTALVDMYAKCSSI 361
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
DA F L+ + V+WT+ I + G + + M E I N T +SVLKAC
Sbjct: 362 VDARKGFDYLQEPDIVLWTSMIGGYVQNGENEDALSLYGRMEMEGILPNELTMASVLKAC 421
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
+ G+Q+HA VK G + + L MY KC L+D VF + +++ S
Sbjct: 422 SSLAALEQ-GKQIHARTVKYGFGLEVPIGSALSTMYAKCGCLKDGTLVFRRM-PARDVIS 479
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
WNAM+ G +NG EA + M+ G + ++ ACS
Sbjct: 480 WNAMISGLSQNGCGKEALELFEEMQLEGTKPDYVTFVNILSACS 523
Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 94/339 (27%), Positives = 148/339 (43%), Gaps = 18/339 (5%)
Query: 4 LCLPITTDMYTCLIKEC---TFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCG 60
+ LP +T L++ + QK A +++ V I N L+ ++ C
Sbjct: 1 MTLPSNRSFFTALLQYTHNRSLQKGKALHAQIIKSSSSCVYIA------NSLVNLYAKCQ 54
Query: 61 QLDTARQLFDEMPLRDFNSWAVMIVGYVD--VADYQECITLFAEMMKRKKGHMLLVFPAW 118
+L A+ +F+ + +D SW +I GY + + LF M F
Sbjct: 55 RLREAKFVFERIQNKDVVSWNCIINGYSQHGPSGSSHVMELFQRMRAENTAPNAHTFAG- 113
Query: 119 IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL 178
V A ++ G+ H + K+ S R++ + SL+N Y K +A VF +
Sbjct: 114 ----VFTAASTLVDAAGGRLAHAVAIKMDSCRDVFVGSSLMNMYCKAGLTPEARKVFDTM 169
Query: 179 KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCG 238
N+V W I + + F+ M RE +N + F+SVL A + + N G
Sbjct: 170 PERNSVSWATMISGYASQKLAAEALGLFRLMRREEEGENEFVFTSVLSAL-TLPELVNNG 228
Query: 239 RQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIR 298
+Q+H VK GL S V LV MY KC L DA + FE DK +I +W+AM+ G +
Sbjct: 229 KQIHCIAVKNGLLSIVSVGNALVTMYAKCGSLDDALQTFETSSDKNSI-TWSAMITGXAQ 287
Query: 299 NGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISAS 337
+G +A K M SGI+ E + ACS + A+
Sbjct: 288 SGDSDKALKLFSSMHLSGIRPSEFTFVGVINACSDLGAA 326
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 87/191 (45%), Gaps = 7/191 (3%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
++ + + + L+ M+ C + AR+ FD + D W MI GYV + ++ ++
Sbjct: 338 KLGFESQIYVMTALVDMYAKCSSIVDARKGFDYLQEPDIVLWTSMIGGYVQNGENEDALS 397
Query: 99 LFAEMMKRKKGHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGS 157
L+ M M + P + + VLKAC +E GKQ+H K G + + +
Sbjct: 398 LYGRM------EMEGILPNELTMASVLKACSSLAALEQGKQIHARTVKYGFGLEVPIGSA 451
Query: 158 LINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKN 217
L Y K CL+D VF ++ + + W A I + G + F+EM E K +
Sbjct: 452 LSTMYAKCGCLKDGTLVFRRMPARDVISWNAMISGLSQNGCGKEALELFEEMQLEGTKPD 511
Query: 218 SYTFSSVLKAC 228
TF ++L AC
Sbjct: 512 YVTFVNILSAC 522
>gi|75273443|sp|Q9LIQ7.1|PP252_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g24000, mitochondrial; Flags: Precursor
gi|9294669|dbj|BAB03018.1| unnamed protein product [Arabidopsis thaliana]
Length = 633
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 91/329 (27%), Positives = 161/329 (48%), Gaps = 12/329 (3%)
Query: 6 LPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTA 65
+P Y L+K+CT K + HI + + + ++ N LL M+ CG L+ A
Sbjct: 56 IPADRRFYNTLLKKCTVFKLLIQGRIVHAHILQSI-FRHDIVMGNTLLNMYAKCGSLEEA 114
Query: 66 RQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLK 125
R++F++MP RDF +W +I GY + + F +M++ G+ F + V+K
Sbjct: 115 RKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRF--GYSPNEF---TLSSVIK 169
Query: 126 ACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVV 185
A G Q+HG K G N+ + +L++ Y ++ ++DA VF L+ N V
Sbjct: 170 AAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVS 229
Query: 186 WTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDG--NCGRQMHA 243
W A I + R + F+ M R+ + + ++++S+ AC G G+ +HA
Sbjct: 230 WNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSST---GFLEQGKWVHA 286
Query: 244 NIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYV 303
++K G + + L+DMY K + DA ++F+ + K+++ SWN++L Y ++G
Sbjct: 287 YMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLA-KRDVVSWNSLLTAYAQHGFGK 345
Query: 304 EATKFLYLMKASGIQIQESLINDLRIACS 332
EA + M+ GI+ E + ACS
Sbjct: 346 EAVWWFEEMRRVGIRPNEISFLSVLTACS 374
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 101/211 (47%), Gaps = 2/211 (0%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
+LK C + G+ VH + + +I + +L+N Y K LE+A VF ++ + +
Sbjct: 66 LLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRD 125
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
V WT I + F +M R N +T SSV+KA + G CG Q+H
Sbjct: 126 FVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAA-ERRGCCGHQLH 184
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
VK G +S+ +V L+D+Y + L+ DA+ VF+ + + +N SWNA++ G+ R
Sbjct: 185 GFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDAL-ESRNDVSWNALIAGHARRSGT 243
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIACSS 333
+A + M G + L ACSS
Sbjct: 244 EKALELFQGMLRDGFRPSHFSYASLFGACSS 274
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 111/246 (45%), Gaps = 14/246 (5%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR--KKG 109
LL ++ G +D A+ +FD + R+ SW +I G+ + ++ + LF M++ +
Sbjct: 202 LLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPS 261
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
H + AC T +E GK VH + K G +L++ Y K +
Sbjct: 262 HF-------SYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIH 314
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
DA +F +L + + V W + + + G + F+EM R I+ N +F SVL AC
Sbjct: 315 DARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACS 374
Query: 230 --GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
G+ D+G + + K G+ + + +VD+ G+ L A R E + + A
Sbjct: 375 HSGLLDEG---WHYYELMKKDGIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAA 431
Query: 288 SWNAML 293
W A+L
Sbjct: 432 IWKALL 437
>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
Length = 726
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 87/286 (30%), Positives = 142/286 (49%), Gaps = 7/286 (2%)
Query: 47 LFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR 106
L N L++M++ ++ ++F+ M D SW ++ G+ D +F +M+
Sbjct: 188 LVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRIFYQMLLE 247
Query: 107 KKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166
+ F + VL++C ++ E GKQVH + K S + + +L++ Y K R
Sbjct: 248 GFKPNMFTF-----ISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDFVGTALVDMYAKAR 302
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
CLEDA F +L + WT I + + F++M RE IK N YT +S L
Sbjct: 303 CLEDAGVAFDRLVNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREGIKPNEYTLASCLS 362
Query: 227 ACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
C + N GRQ+HA VK G D +V LVD+YGKC + AE +F+ ++ ++I
Sbjct: 363 GCSHMATLEN-GRQLHAVAVKAGHFGDIFVGSALVDLYGKCGCMEHAEAIFKGLI-SRDI 420
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
SWN ++ GY ++G +A + +M + GI E+ + ACS
Sbjct: 421 VSWNTIISGYSQHGQGEKALEAFRMMLSEGIMPDEATFIGVLSACS 466
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/286 (29%), Positives = 138/286 (48%), Gaps = 9/286 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ CG + A ++F ++ D +W+ MI G QE LF +M+RK
Sbjct: 92 LVDMYSKCGTVYDALKVFTKIRNPDVVAWSAMITGLDQQGHGQEAAELF-HLMRRKGAR- 149
Query: 112 LLVFPAWIIVCVLKACVCTM-NMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
P + L + M ++ G+ +HG + K G + ++ LI Y K RC+ED
Sbjct: 150 ----PNQFTLSSLVSTATNMGDLRYGQSIHGCICKYGFESDNLVSNPLIMMYMKSRCVED 205
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
+ VF + + V W A + + F +M E K N +TF SVL++C
Sbjct: 206 GNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRIFYQMLLEGFKPNMFTFISVLRSCSS 265
Query: 231 VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWN 290
+ D G+Q+HA+I+K + D++V LVDMY K R L DA F+ +V+ ++I SW
Sbjct: 266 LLDP-EFGKQVHAHIIKNSSDDDDFVGTALVDMYAKARCLEDAGVAFDRLVN-RDIFSWT 323
Query: 291 AMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
++ GY + +A K+ M+ GI+ E + CS ++
Sbjct: 324 VIISGYAQTDQAEKAVKYFRQMQREGIKPNEYTLASCLSGCSHMAT 369
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 80/274 (29%), Positives = 137/274 (50%), Gaps = 9/274 (3%)
Query: 62 LDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIV 121
++ A +LF MP ++ SW ++ GY + D ++ + LF +M + + F + +
Sbjct: 1 MELAERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETK-----FSKFTLS 55
Query: 122 CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH 181
VLK C T ++ GK +H L + G + L SL++ Y K + DA VF++++
Sbjct: 56 TVLKGCANTGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNP 115
Query: 182 NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQM 241
+ V W+A I ++GH + F M R+ + N +T SS++ + D G+ +
Sbjct: 116 DVVAWSAMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDL-RYGQSI 174
Query: 242 HANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGL 301
H I K G ESD V L+ MY K R + D +VFE + + ++ SWNA+L G+ +
Sbjct: 175 HGCICKYGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTN-PDLVSWNALLSGFYDSQT 233
Query: 302 YVEATKFLYLMKASGIQIQE-SLINDLRIACSSI 334
+ Y M G + + I+ LR +CSS+
Sbjct: 234 CGRGPRIFYQMLLEGFKPNMFTFISVLR-SCSSL 266
>gi|356503704|ref|XP_003520645.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
mitochondrial-like [Glycine max]
Length = 855
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 96/332 (28%), Positives = 158/332 (47%), Gaps = 9/332 (2%)
Query: 3 NLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQL 62
N + + + Y LI CT + ++ +HI K N +P L+ N +L M+ CG L
Sbjct: 150 NSSIQLESSTYGNLILACTSIRSLKYGKKIHDHILKS-NCQPDLVLQNHILNMYGKCGSL 208
Query: 63 DTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVC 122
AR+ FD M LR+ SW +MI GY + I ++ +M++ L F +
Sbjct: 209 KDARKAFDTMQLRNVVSWTIMISGYSQNGQENDAIIMYIQMLQSGYFPDPLTFGS----- 263
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
++KAC +++LG+Q+HG + K G ++ +LI+ Y +F + A VF+ + +
Sbjct: 264 IIKACCIAGDIDLGRQLHGHVIKSGYDHHLIAQNALISMYTRFGQIVHASDVFTMISTKD 323
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERI-KKNSYTFSSVLKACGGVDDDGNCGRQM 241
+ W + I + G+ + F++M R+ + N + F SV AC + + GRQ+
Sbjct: 324 LISWASMITGFTQLGYEIEALYLFRDMFRQGFYQPNEFIFGSVFSACRSLLEP-EFGRQI 382
Query: 242 HANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGL 301
H K GL + + C L DMY K L A R F I + ++ SWNA++ + +G
Sbjct: 383 HGMCAKFGLGRNVFAGCSLCDMYAKFGFLPSAIRAFYQI-ESPDLVSWNAIIAAFSDSGD 441
Query: 302 YVEATKFLYLMKASGIQIQESLINDLRIACSS 333
EA F M +G+ L AC S
Sbjct: 442 VNEAIYFFCQMMHTGLMPDGITFLSLLCACGS 473
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 96/333 (28%), Positives = 153/333 (45%), Gaps = 9/333 (2%)
Query: 7 PITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTAR 66
P+T + +IK C D +L H+ K L+ N L+ M+ GQ+ A
Sbjct: 258 PLT---FGSIIKACCIAGDIDLGRQLHGHVIKS-GYDHHLIAQNALISMYTRFGQIVHAS 313
Query: 67 QLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKA 126
+F + +D SWA MI G+ + E + LF +M ++ +I V A
Sbjct: 314 DVFTMISTKDLISWASMITGFTQLGYEIEALYLFRDMFRQG----FYQPNEFIFGSVFSA 369
Query: 127 CVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVW 186
C + E G+Q+HG+ K G RN+ SL + Y KF L A F Q++ + V W
Sbjct: 370 CRSLLEPEFGRQIHGMCAKFGLGRNVFAGCSLCDMYAKFGFLPSAIRAFYQIESPDLVSW 429
Query: 187 TAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIV 246
A I G ++ F +M + + TF S+L ACG N G Q+H+ I+
Sbjct: 430 NAIIAAFSDSGDVNEAIYFFCQMMHTGLMPDGITFLSLLCACGSPVTI-NQGTQIHSYII 488
Query: 247 KIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEAT 306
KIGL+ + V L+ MY KC L DA VF+ + + N+ SWNA+L +++ E
Sbjct: 489 KIGLDKEAAVCNSLLTMYTKCSNLHDAFNVFKDVSENANLVSWNAILSACLQHKQAGEVF 548
Query: 307 KFLYLMKASGIQIQESLINDLRIACSSISASKI 339
+ LM S + I + C+ +++ ++
Sbjct: 549 RLFKLMLFSENKPDNITITTILGTCAELASLEV 581
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 86/281 (30%), Positives = 129/281 (45%), Gaps = 8/281 (2%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+ G L +A + F ++ D SW +I + D D E I F +MM H L+
Sbjct: 404 MYAKFGFLPSAIRAFYQIESPDLVSWNAIIAAFSDSGDVNEAIYFFCQMM-----HTGLM 458
Query: 115 FPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFV 174
+ +L AC + + G Q+H + K+G + ++ SL+ Y K L DA V
Sbjct: 459 PDGITFLSLLCACGSPVTINQGTQIHSYIIKIGLDKEAAVCNSLLTMYTKCSNLHDAFNV 518
Query: 175 FSQLKRH-NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDD 233
F + + N V W A + + +VF FK M K ++ T +++L C +
Sbjct: 519 FKDVSENANLVSWNAILSACLQHKQAGEVFRLFKLMLFSENKPDNITITTILGTCAELAS 578
Query: 234 DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
G Q+H VK GL D V L+DMY KC L+ A VF +I SW++++
Sbjct: 579 L-EVGNQVHCFSVKSGLVVDVSVSNRLIDMYAKCGSLKHARDVFG-STQNPDIVSWSSLI 636
Query: 294 VGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
VGY + GL EA +MK G+Q E + ACS I
Sbjct: 637 VGYAQFGLGHEALNLFRMMKNLGVQPNEVTYLGVLSACSHI 677
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 100/210 (47%), Gaps = 3/210 (1%)
Query: 126 ACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVV 185
AC +++ GK++H + K ++ L ++N YGK L+DA F ++ N V
Sbjct: 166 ACTSIRSLKYGKKIHDHILKSNCQPDLVLQNHILNMYGKCGSLKDARKAFDTMQLRNVVS 225
Query: 186 WTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANI 245
WT I + G + + +M + + TF S++KAC + D + GRQ+H ++
Sbjct: 226 WTIMISGYSQNGQENDAIIMYIQMLQSGYFPDPLTFGSIIKAC-CIAGDIDLGRQLHGHV 284
Query: 246 VKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEA 305
+K G + Q L+ MY + + A VF +I K++ SW +M+ G+ + G +EA
Sbjct: 285 IKSGYDHHLIAQNALISMYTRFGQIVHASDVFTMI-STKDLISWASMITGFTQLGYEIEA 343
Query: 306 TKFLYLMKASGI-QIQESLINDLRIACSSI 334
M G Q E + + AC S+
Sbjct: 344 LYLFRDMFRQGFYQPNEFIFGSVFSACRSL 373
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 113/252 (44%), Gaps = 18/252 (7%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLR-DFNSWAVMIVGYVDVADYQECITLFAEMM--KR 106
N LL M+ C L A +F ++ + SW ++ + E LF M+ +
Sbjct: 500 NSLLTMYTKCSNLHDAFNVFKDVSENANLVSWNAILSACLQHKQAGEVFRLFKLMLFSEN 559
Query: 107 KKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166
K ++ I +L C ++E+G QVH K G ++S++ LI+ Y K
Sbjct: 560 KPDNI-------TITTILGTCAELASLEVGNQVHCFSVKSGLVVDVSVSNRLIDMYAKCG 612
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
L+ A VF + + V W++ IV + G H+ N F+ M ++ N T+ VL
Sbjct: 613 SLKHARDVFGSTQNPDIVSWSSLIVGYAQFGLGHEALNLFRMMKNLGVQPNEVTYLGVLS 672
Query: 227 AC---GGVDDDGNCGRQMHANIVKIGL-ESDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282
AC G V++ + M +++G+ + E+V C +VD+ + L +AE + +
Sbjct: 673 ACSHIGLVEEGWHFYNTME---IELGIPPTREHVSC-MVDLLARAGCLYEAENFIKKMGF 728
Query: 283 KKNIASWNAMLV 294
+I W +L
Sbjct: 729 NPDITMWKTLLA 740
>gi|359481513|ref|XP_003632631.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
mitochondrial-like [Vitis vinifera]
Length = 755
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 158/335 (47%), Gaps = 13/335 (3%)
Query: 3 NLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQL 62
CL ++T Y LI C++ + ++ +H+ K + P L N +L M+ C L
Sbjct: 58 GFCLTLST--YAYLISACSYLRSLEHGKKIHDHMLKSKS-HPDLTLQNHILNMYGKCKSL 114
Query: 63 DTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIV 121
A+++FD MP R+ SW +I GY + + +M++ V P +
Sbjct: 115 KDAQKVFDAMPERNVVSWTSVIAGYSQNGQGGNALEFYFQMLQSG------VMPDQFTFG 168
Query: 122 CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH 181
++KAC ++ LG+Q+H + K +I +LI+ Y K + DA VFS++
Sbjct: 169 SIIKACSSLGDIGLGRQLHAHVLKSEFGAHIIAQNALISMYTKSNLIIDALDVFSRMATR 228
Query: 182 NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIK-KNSYTFSSVLKACGGVDDDGNCGRQ 240
+ + W + I + G+ + FKEM + + N + F SV AC + GRQ
Sbjct: 229 DLISWGSMIAGFSQLGYELEALCYFKEMLHQGVYLPNEFIFGSVFSACSSLLQP-EYGRQ 287
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
+H +K GL D + C L DMY KC LL A VF I + ++ +WNA++ G+ G
Sbjct: 288 LHGMSIKFGLGRDVFAGCSLCDMYAKCGLLSCARVVFYQI-GRPDLVAWNAIIAGFAYGG 346
Query: 301 LYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
EA F M+ G+ E + L AC+S S
Sbjct: 347 DAKEAIAFFSQMRHQGLIPDEITVRSLLCACTSPS 381
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 92/308 (29%), Positives = 137/308 (44%), Gaps = 10/308 (3%)
Query: 8 ITTDMYT--CLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTA 65
+ D +T +IK C+ D +L H+ K ++ N L+ M+ + A
Sbjct: 160 VMPDQFTFGSIIKACSSLGDIGLGRQLHAHVLKS-EFGAHIIAQNALISMYTKSNLIIDA 218
Query: 66 RQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCVL 124
+F M RD SW MI G+ + E + F EM+ H + P +I V
Sbjct: 219 LDVFSRMATRDLISWGSMIAGFSQLGYELEALCYFKEML-----HQGVYLPNEFIFGSVF 273
Query: 125 KACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTV 184
AC + E G+Q+HG+ K G R++ SL + Y K L A VF Q+ R + V
Sbjct: 274 SACSSLLQPEYGRQLHGMSIKFGLGRDVFAGCSLCDMYAKCGLLSCARVVFYQIGRPDLV 333
Query: 185 VWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHAN 244
W A I G + F +M + + + T S+L AC + G Q+H
Sbjct: 334 AWNAIIAGFAYGGDAKEAIAFFSQMRHQGLIPDEITVRSLLCACTSPSELYQ-GMQVHGY 392
Query: 245 IVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVE 304
I K+GL+ D V L+ MY KC LRDA FE + ++ SWNA+L +R+ E
Sbjct: 393 INKMGLDLDVPVCNTLLTMYAKCSELRDAIFFFEEMRCNADLVSWNAILTACMRHDQAEE 452
Query: 305 ATKFLYLM 312
+ L LM
Sbjct: 453 VFRLLKLM 460
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 83/283 (29%), Positives = 137/283 (48%), Gaps = 12/283 (4%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+ CG L AR +F ++ D +W +I G+ D +E I F++M R +G +
Sbjct: 310 MYAKCGLLSCARVVFYQIGRPDLVAWNAIIAGFAYGGDAKEAIAFFSQM--RHQG----L 363
Query: 115 FPAWIIVCVLKACVCTMNMEL--GKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDAD 172
P I V L C CT EL G QVHG + K+G ++ + +L+ Y K L DA
Sbjct: 364 IPDEITVRSL-LCACTSPSELYQGMQVHGYINKMGLDLDVPVCNTLLTMYAKCSELRDAI 422
Query: 173 FVFSQLK-RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
F F +++ + V W A + R +VF K M + + + T ++VL A
Sbjct: 423 FFFEEMRCNADLVSWNAILTACMRHDQAEEVFRLLKLMCISQHRPDYITLTNVLGASAET 482
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
G Q+H +K GL D V GL+D+Y KC L+ A ++F+ +++ ++ SW++
Sbjct: 483 VSI-EIGNQVHCYALKTGLNCDTSVTNGLIDLYAKCGSLKTAHKIFDSMINP-DVVSWSS 540
Query: 292 MLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
+++GY + G EA K M+ ++ + ACS +
Sbjct: 541 LILGYAQFGYGEEALKLFKTMRRLDVKPNHVTFVGVLTACSHV 583
Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 125/244 (51%), Gaps = 9/244 (3%)
Query: 93 YQECITLFAEMMKRKKGHML-LVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRN 151
+ E I F E +++K G L L A++I AC ++E GK++H + K S +
Sbjct: 43 FNEAIKAF-EFLQKKTGFCLTLSTYAYLI----SACSYLRSLEHGKKIHDHMLKSKSHPD 97
Query: 152 ISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGR 211
++L ++N YGK + L+DA VF + N V WT+ I + G + +M +
Sbjct: 98 LTLQNHILNMYGKCKSLKDAQKVFDAMPERNVVSWTSVIAGYSQNGQGGNALEFYFQMLQ 157
Query: 212 ERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLR 271
+ + +TF S++KAC + D G GRQ+HA+++K + Q L+ MY K L+
Sbjct: 158 SGVMPDQFTFGSIIKACSSLGDIG-LGRQLHAHVLKSEFGAHIIAQNALISMYTKSNLII 216
Query: 272 DAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQ-ESLINDLRIA 330
DA VF + +++ SW +M+ G+ + G +EA + M G+ + E + + A
Sbjct: 217 DALDVFSRMA-TRDLISWGSMIAGFSQLGYELEALCYFKEMLHQGVYLPNEFIFGSVFSA 275
Query: 331 CSSI 334
CSS+
Sbjct: 276 CSSL 279
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 116/258 (44%), Gaps = 18/258 (6%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLR-DFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
N LL M+ C +L A F+EM D SW ++ + +E L M +
Sbjct: 406 NTLLTMYAKCSELRDAIFFFEEMRCNADLVSWNAILTACMRHDQAEEVFRLLKLMCISQH 465
Query: 109 GHMLLVFPAWIIVC-VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
P +I + VL A T+++E+G QVH K G + + S+T LI+ Y K
Sbjct: 466 R------PDYITLTNVLGASAETVSIEIGNQVHCYALKTGLNCDTSVTNGLIDLYAKCGS 519
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
L+ A +F + + V W++ I+ + G+ + FK M R +K N TF VL A
Sbjct: 520 LKTAHKIFDSMINPDVVSWSSLILGYAQFGYGEEALKLFKTMRRLDVKPNHVTFVGVLTA 579
Query: 228 C---GGVDDDGNCGRQMHANIVK-IGL-ESDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282
C G V++ G +++ + K G+ + E+ C +VD+ + L +AE +
Sbjct: 580 CSHVGLVEE----GWKLYGTMEKEFGIAPTREHCSC-MVDLLARAGCLNEAEGFIHQMAF 634
Query: 283 KKNIASWNAMLVGYIRNG 300
+I W +L +G
Sbjct: 635 DPDIVVWKTLLAACKTHG 652
>gi|413922867|gb|AFW62799.1| putative pentatricopeptide repeat family protein [Zea mays]
Length = 882
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 91/291 (31%), Positives = 146/291 (50%), Gaps = 14/291 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEM----PLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
N L+ ++ G +D AR++FDE R+ SW MI YV + I +F EM+
Sbjct: 139 NALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNTMISAYVKNDQSGDAIGVFREMVW 198
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
+ F CV+ AC + ++E G+QVHG + + G +++ +L++ Y K
Sbjct: 199 SGERPNEFGFS-----CVVNACTGSRDLEAGRQVHGAVVRTGYEKDVFTANALVDMYSKL 253
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
+E A VF ++ + V W A I GH H+ +M + N +T SSVL
Sbjct: 254 GDIEMAATVFEKMPAADVVSWNAFISGCVTHGHDHRALELLLQMKSSGLVPNVFTLSSVL 313
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
KAC G N GRQ+H +VK + DE+V GLVDMY K L DA +VF+ + +++
Sbjct: 314 KACAGA-GAFNLGRQIHGFMVKAVADFDEFVAVGLVDMYAKHGFLDDARKVFDFM-PRRD 371
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQI---QESLINDLRIACSS 333
+ WNA++ G +G + E + M+ G+ + + +L + L+ SS
Sbjct: 372 LILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLASVLKSTASS 422
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 93/327 (28%), Positives = 152/327 (46%), Gaps = 12/327 (3%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
++C++ CT +D ++ + R + + N L+ M+ G ++ A +F++M
Sbjct: 208 FSCVVNACTGSRDLEAGRQVHGAV-VRTGYEKDVFTANALVDMYSKLGDIEMAATVFEKM 266
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN 132
P D SW I G V + L +M + G LV + + VLKAC
Sbjct: 267 PAADVVSWNAFISGCVTHGHDHRALELLLQM--KSSG---LVPNVFTLSSVLKACAGAGA 321
Query: 133 MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192
LG+Q+HG + K + + + L++ Y K L+DA VF + R + ++W A I
Sbjct: 322 FNLGRQIHGFMVKAVADFDEFVAVGLVDMYAKHGFLDDARKVFDFMPRRDLILWNALISG 381
Query: 193 NCREGHFHQVFNDFKEMGRE--RIKKNSYTFSSVLKACGGVDDDGNC-GRQMHANIVKIG 249
+G +V + F M +E + N T +SVLK+ + C RQ+HA KIG
Sbjct: 382 CSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLASVLKST--ASSEAICHTRQVHALAEKIG 439
Query: 250 LESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFL 309
L SD +V GL+D Y KC L A +VF+ +I S M+ + +A K
Sbjct: 440 LLSDSHVINGLIDSYWKCGQLDYAIKVFKE-SRSDDIISSTTMMTALSQCDHGEDAIKLF 498
Query: 310 YLMKASGIQIQESLINDLRIACSSISA 336
M G++ +++ L AC+S+SA
Sbjct: 499 VQMLRKGLEPDSFVLSSLLNACTSLSA 525
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 81/293 (27%), Positives = 127/293 (43%), Gaps = 14/293 (4%)
Query: 48 FLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRK 107
F N LL ++ C AR +FDE+P SW+ ++ Y + ++ + F M R
Sbjct: 39 FSNHLLTLYSRCRLPSAARAVFDEIPDPCHVSWSSLVTAYSNNGMPRDALLAFRAMRGRG 98
Query: 108 KGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
P VLK C ++ G QVH L ++ + +L+ YG F
Sbjct: 99 VPCNEFALP-----VVLK---CAPDVRFGAQVHALAVATRLVHDVFVANALVAVYGGFGM 150
Query: 168 LEDADFVFSQL----KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSS 223
+++A +F + N V W I + F+EM + N + FS
Sbjct: 151 VDEARRMFDEYVGVGGERNAVSWNTMISAYVKNDQSGDAIGVFREMVWSGERPNEFGFSC 210
Query: 224 VLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
V+ AC G D GRQ+H +V+ G E D + LVDMY K + A VFE +
Sbjct: 211 VVNACTG-SRDLEAGRQVHGAVVRTGYEKDVFTANALVDMYSKLGDIEMAATVFEKM-PA 268
Query: 284 KNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
++ SWNA + G + +G A + L MK+SG+ ++ + AC+ A
Sbjct: 269 ADVVSWNAFISGCVTHGHDHRALELLLQMKSSGLVPNVFTLSSVLKACAGAGA 321
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 79/281 (28%), Positives = 133/281 (47%), Gaps = 5/281 (1%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ G LD AR++FD MP RD W +I G + E ++LF M RK+G +
Sbjct: 347 LVDMYAKHGFLDDARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSLFHRM--RKEG-L 403
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
L + VLK+ + + +QVH L K+G + + LI+ Y K L+ A
Sbjct: 404 DLDVNRTTLASVLKSTASSEAICHTRQVHALAEKIGLLSDSHVINGLIDSYWKCGQLDYA 463
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
VF + + + + T + + H F +M R+ ++ +S+ SS+L AC +
Sbjct: 464 IKVFKESRSDDIISSTTMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACTSL 523
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
G+Q+HA+++K SD + LV Y KC + DA+ F + ++ I SW+A
Sbjct: 524 SAYEQ-GKQVHAHLIKRQFTSDVFAGNALVYAYAKCGSIEDADMAFSGL-PERGIVSWSA 581
Query: 292 MLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
M+ G ++G A + M G+ + + AC+
Sbjct: 582 MIGGLAQHGHGKRALDLFHRMLDEGVAPNHITLTSVLSACN 622
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 73/249 (29%), Positives = 115/249 (46%), Gaps = 13/249 (5%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
+N L+ + CGQLD A ++F E D S M+ ++ I LF +M+++
Sbjct: 447 INGLIDSYWKCGQLDYAIKVFKESRSDDIISSTTMMTALSQCDHGEDAIKLFVQMLRKG- 505
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
L ++++ +L AC E GKQVH L K + ++ +L+ Y K +
Sbjct: 506 ----LEPDSFVLSSLLNACTSLSAYEQGKQVHAHLIKRQFTSDVFAGNALVYAYAKCGSI 561
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
EDAD FS L V W+A I + GH + + F M E + N T +SVL AC
Sbjct: 562 EDADMAFSGLPERGIVSWSAMIGGLAQHGHGKRALDLFHRMLDEGVAPNHITLTSVLSAC 621
Query: 229 ---GGVDDDGNCGRQMHANIVKIGLE-SDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
G VDD M G++ ++E+ C ++D+ G+ L DA + + +
Sbjct: 622 NHAGLVDDAKKYFESMKET---FGIDRTEEHYAC-MIDILGRAGKLEDAMELVNNMPFQA 677
Query: 285 NIASWNAML 293
N A W A+L
Sbjct: 678 NAAVWGALL 686
>gi|356577133|ref|XP_003556682.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18520-like [Glycine max]
Length = 773
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 88/295 (29%), Positives = 149/295 (50%), Gaps = 8/295 (2%)
Query: 42 IKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFA 101
I P N L+ ++ G+L AR++FD M ++ +W +I GY+ E LF
Sbjct: 269 IHPVTYVDNNLICSYLRLGKLAQARRVFDGMSRKNTVTWTAIIDGYLKFNLDDEAFKLFQ 328
Query: 102 EMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINF 161
+ +K +F VC++ C +++ELGKQ+H + K RN+ + ++++F
Sbjct: 329 DCVKHGVPANSKMF-----VCIMNLCGRRVDLELGKQIHARILK-SRWRNLIVDNAVVHF 382
Query: 162 YGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTF 221
Y K + A F + + + WT I ++G H+ + +M + N YT
Sbjct: 383 YAKCGNISSAFRAFDCMAERDVICWTTMITACSQQGFGHEALSMLSQMLSDGFYPNEYTI 442
Query: 222 SSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIV 281
S LKACG + G Q+H I+K +SD ++ LVDMY KC ++ D++ VF+ +
Sbjct: 443 CSALKACGE-NKALKFGTQLHGAIIKKICKSDVFIGTSLVDMYAKCGVMVDSKVVFDRM- 500
Query: 282 DKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+N A+W +++ GY RNG EAT F LMK I + + + + +AC +I +
Sbjct: 501 RIRNTATWTSIISGYARNGFGEEATSFFRLMKMKRIHVNKLTVLSVLMACGTIKS 555
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 93/324 (28%), Positives = 158/324 (48%), Gaps = 8/324 (2%)
Query: 17 IKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRD 76
+K C K +L I K++ K + L+ M+ CG + ++ +FD M +R+
Sbjct: 446 LKACGENKALKFGTQLHGAIIKKI-CKSDVFIGTSLVDMYAKCGVMVDSKVVFDRMRIRN 504
Query: 77 FNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELG 136
+W +I GY +E + F +MK K+ H+ + ++ VL AC ++ G
Sbjct: 505 TATWTSIISGYARNGFGEEATSFF-RLMKMKRIHVNKL----TVLSVLMACGTIKSLLFG 559
Query: 137 KQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCRE 196
++VH + K NI + +L+ FY K + A V + + V WTA I R
Sbjct: 560 REVHAQIIKSNIHTNIYVGSTLVWFYCKCKEYSYAFKVLQYMPFRDVVSWTAIISGCARL 619
Query: 197 GHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYV 256
G H+ +EM E + NSYT+SS LKAC ++ G+ +H+ K S+ +V
Sbjct: 620 GLEHEALEFLQEMMEEGVLPNSYTYSSALKACAELEAPIQ-GKLIHSYASKTPASSNVFV 678
Query: 257 QCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASG 316
L+ MY KC + DA +VF+ + ++N+ SW +M++ Y RNG EA K ++ M+A G
Sbjct: 679 NSALIYMYSKCGYVADAFQVFDNM-PERNVVSWESMILAYARNGHAREALKLMHRMQAEG 737
Query: 317 IQIQESLINDLRIACSSISASKIN 340
+ + + + AC + I+
Sbjct: 738 FVVDDYIHTTVISACGGVEHGDIH 761
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 92/335 (27%), Positives = 155/335 (46%), Gaps = 15/335 (4%)
Query: 6 LPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRV--NIKPTLLFLNRLLLMHVSCGQLD 63
+P + M+ C++ C + D EL I R+ + L+ N ++ + CG +
Sbjct: 335 VPANSKMFVCIMNLCGRRVD----LELGKQIHARILKSRWRNLIVDNAVVHFYAKCGNIS 390
Query: 64 TARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVC- 122
+A + FD M RD W MI E +++ ++M+ +P +C
Sbjct: 391 SAFRAFDCMAERDVICWTTMITACSQQGFGHEALSMLSQMLSDG------FYPNEYTICS 444
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
LKAC ++ G Q+HG + K ++ + SL++ Y K + D+ VF +++ N
Sbjct: 445 ALKACGENKALKFGTQLHGAIIKKICKSDVFIGTSLVDMYAKCGVMVDSKVVFDRMRIRN 504
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
T WT+ I R G + + F+ M +RI N T SVL ACG + GR++H
Sbjct: 505 TATWTSIISGYARNGFGEEATSFFRLMKMKRIHVNKLTVLSVLMACGTI-KSLLFGREVH 563
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
A I+K + ++ YV LV Y KC+ A +V + + +++ SW A++ G R GL
Sbjct: 564 AQIIKSNIHTNIYVGSTLVWFYCKCKEYSYAFKVLQYM-PFRDVVSWTAIISGCARLGLE 622
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIACSSISAS 337
EA +FL M G+ + AC+ + A
Sbjct: 623 HEALEFLQEMMEEGVLPNSYTYSSALKACAELEAP 657
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 87/207 (42%), Gaps = 3/207 (1%)
Query: 132 NMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIV 191
NME +VH ++ K + +LI Y + L A VF + R NTV WTA I
Sbjct: 253 NMEEVGRVHTIVLKFFIHPVTYVDNNLICSYLRLGKLAQARRVFDGMSRKNTVTWTAIID 312
Query: 192 NNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLE 251
+ + F F++ + + NS F ++ CG D G+Q+HA I+K
Sbjct: 313 GYLKFNLDDEAFKLFQDCVKHGVPANSKMFVCIMNLCGR-RVDLELGKQIHARILKSRWR 371
Query: 252 SDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYL 311
+ V +V Y KC + A R F+ + + +++ W M+ + G EA L
Sbjct: 372 -NLIVDNAVVHFYAKCGNISSAFRAFDCMAE-RDVICWTTMITACSQQGFGHEALSMLSQ 429
Query: 312 MKASGIQIQESLINDLRIACSSISASK 338
M + G E I AC A K
Sbjct: 430 MLSDGFYPNEYTICSALKACGENKALK 456
>gi|225459793|ref|XP_002284799.1| PREDICTED: pentatricopeptide repeat-containing protein At2g33680
[Vitis vinifera]
gi|302141693|emb|CBI18896.3| unnamed protein product [Vitis vinifera]
Length = 703
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 92/289 (31%), Positives = 141/289 (48%), Gaps = 11/289 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+ L+ M+ G AR++FD MP R+ SWA MI GY E + LF M + ++G
Sbjct: 147 SSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMISGYASQKLAAEALGLFRLMRREEEG 206
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
VF + VL A + GKQ+H + K G +S+ +L+ Y K L+
Sbjct: 207 ENEFVFTS-----VLSALTLPELVNNGKQIHCIAVKNGLLSIVSVGNALVTMYAKCGSLD 261
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
DA F N++ W+A I + G + F M I+ + +TF V+ AC
Sbjct: 262 DALQTFETSSDKNSITWSAMITGYAQSGDSDKALKLFSSMHLSGIRPSEFTFVGVINAC- 320
Query: 230 GVDDDGNC--GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
D G G+Q+H ++K+G ES YV LVDMY KC + DA + F+ + + +I
Sbjct: 321 --SDLGAAWEGKQVHDYLLKLGFESQIYVMTALVDMYAKCSSIVDARKGFDYL-QEPDIV 377
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
W +M+ GY++NG +A M+ GI E + + ACSS++A
Sbjct: 378 LWTSMIGGYVQNGENEDALSLYGRMEMEGILPNELTMASVLKACSSLAA 426
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 89/284 (31%), Positives = 134/284 (47%), Gaps = 9/284 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ CG LD A Q F+ ++ +W+ MI GY D + + LF+ M
Sbjct: 248 NALVTMYAKCGSLDDALQTFETSSDKNSITWSAMITGYAQSGDSDKALKLFSSM------ 301
Query: 110 HMLLVFPA-WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
H+ + P+ + V V+ AC GKQVH L KLG I + +L++ Y K +
Sbjct: 302 HLSGIRPSEFTFVGVINACSDLGAAWEGKQVHDYLLKLGFESQIYVMTALVDMYAKCSSI 361
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
DA F L+ + V+WT+ I + G + + M E I N T +SVLKAC
Sbjct: 362 VDARKGFDYLQEPDIVLWTSMIGGYVQNGENEDALSLYGRMEMEGILPNELTMASVLKAC 421
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
+ G+Q+HA VK G + + L MY KC L+D VF + +++ S
Sbjct: 422 SSLAALEQ-GKQIHARTVKYGFGLEVPIGSALSTMYAKCGCLKDGTLVFRRM-PARDVIS 479
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
WNAM+ G +NG EA + M+ G + ++ ACS
Sbjct: 480 WNAMISGLSQNGCGKEALELFEEMQLEGTKPDYVTFVNILSACS 523
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 95/339 (28%), Positives = 149/339 (43%), Gaps = 18/339 (5%)
Query: 4 LCLPITTDMYTCLIKEC---TFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCG 60
+ LP +T L++ + QK A +++ V I N L+ ++ C
Sbjct: 1 MTLPSNRSFFTALLQYTHNRSLQKGKALHAQIIKSSSSCVYIA------NSLVNLYAKCQ 54
Query: 61 QLDTARQLFDEMPLRDFNSWAVMIVGYVD--VADYQECITLFAEMMKRKKGHMLLVFPAW 118
+L A+ +F+ + +D SW +I GY + + LF M F
Sbjct: 55 RLREAKFVFERIQNKDVVSWNCIINGYSQHGPSGSSHVMELFQRMRAENTAPNAHTFAG- 113
Query: 119 IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL 178
V A ++ G+ H + K+ S R++ + SL+N Y K +A VF +
Sbjct: 114 ----VFTAASTLVDAAGGRLAHAVAIKMDSCRDVFVGSSLMNMYCKAGLTPEARKVFDTM 169
Query: 179 KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCG 238
N+V W I + + F+ M RE +N + F+SVL A + + N G
Sbjct: 170 PERNSVSWATMISGYASQKLAAEALGLFRLMRREEEGENEFVFTSVLSAL-TLPELVNNG 228
Query: 239 RQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIR 298
+Q+H VK GL S V LV MY KC L DA + FE DK +I +W+AM+ GY +
Sbjct: 229 KQIHCIAVKNGLLSIVSVGNALVTMYAKCGSLDDALQTFETSSDKNSI-TWSAMITGYAQ 287
Query: 299 NGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISAS 337
+G +A K M SGI+ E + ACS + A+
Sbjct: 288 SGDSDKALKLFSSMHLSGIRPSEFTFVGVINACSDLGAA 326
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 87/191 (45%), Gaps = 7/191 (3%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
++ + + + L+ M+ C + AR+ FD + D W MI GYV + ++ ++
Sbjct: 338 KLGFESQIYVMTALVDMYAKCSSIVDARKGFDYLQEPDIVLWTSMIGGYVQNGENEDALS 397
Query: 99 LFAEMMKRKKGHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGS 157
L+ M M + P + + VLKAC +E GKQ+H K G + + +
Sbjct: 398 LYGRM------EMEGILPNELTMASVLKACSSLAALEQGKQIHARTVKYGFGLEVPIGSA 451
Query: 158 LINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKN 217
L Y K CL+D VF ++ + + W A I + G + F+EM E K +
Sbjct: 452 LSTMYAKCGCLKDGTLVFRRMPARDVISWNAMISGLSQNGCGKEALELFEEMQLEGTKPD 511
Query: 218 SYTFSSVLKAC 228
TF ++L AC
Sbjct: 512 YVTFVNILSAC 522
>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 748
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 94/326 (28%), Positives = 156/326 (47%), Gaps = 40/326 (12%)
Query: 44 PTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEM 103
P L N +L + G++ LFD MP RD SW +I GY + + + M
Sbjct: 73 PNLYSWNTILSAYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNLM 132
Query: 104 MKRKKGHML--LVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINF 161
+K L + F +I+ + CV +LG+Q+HG + K G + + L++
Sbjct: 133 LKNDGSFNLNRITFSTLLILASKRGCV-----KLGRQIHGHVVKFGFMSYVFVGSPLVDM 187
Query: 162 YGKF-----------------------------RC--LEDADFVFSQLKRHNTVVWTAKI 190
Y K RC +ED+ +F +++ +++ WT+ I
Sbjct: 188 YSKMGMISCARKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMI 247
Query: 191 VNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGL 250
+ G + F+EM E ++ + YTF SVL ACGGV G+Q+HA I++
Sbjct: 248 TGFTQNGLDRDAIDIFREMKLENLQMDQYTFGSVLTACGGVMALQE-GKQVHAYIIRTDY 306
Query: 251 ESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLY 310
+ + +V LVDMY KC+ ++ AE VF+ + KN+ SW AMLVGY +NG EA K
Sbjct: 307 KDNIFVASALVDMYCKCKNIKSAEAVFKKMT-CKNVVSWTAMLVGYGQNGYSEEAVKTFS 365
Query: 311 LMKASGIQIQESLINDLRIACSSISA 336
M+ GI+ + + + +C+++++
Sbjct: 366 DMQKYGIEPDDFTLGSVISSCANLAS 391
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 83/287 (28%), Positives = 139/287 (48%), Gaps = 7/287 (2%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
++ N L++ + CG+++ +++LF EM RD SW MI G+ ++ I +F EM
Sbjct: 209 VVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQNGLDRDAIDIFREMKL 268
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
L + VL AC M ++ GKQVH + + NI + +L++ Y K
Sbjct: 269 EN-----LQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYKDNIFVASALVDMYCKC 323
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
+ ++ A+ VF ++ N V WTA +V + G+ + F +M + I+ + +T SV+
Sbjct: 324 KNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIEPDDFTLGSVI 383
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
+C + G Q HA + GL S V LV +YGKC + D+ R+F I K
Sbjct: 384 SSCANLASLEE-GAQFHARALTSGLISFITVSNALVTLYGKCGSIEDSHRLFNEISFKDE 442
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+ +W A++ GY + G E M A G++ + + ACS
Sbjct: 443 V-TWTALVSGYAQFGKANETIGLFESMLAHGLKPDKVTFIGVLSACS 488
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 61/258 (23%), Positives = 116/258 (44%), Gaps = 11/258 (4%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R + K + + L+ M+ C + +A +F +M ++ SW M+VGY +E +
Sbjct: 303 RTDYKDNIFVASALVDMYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVK 362
Query: 99 LFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGS 157
F++M K + P + + V+ +C ++E G Q H G I+++ +
Sbjct: 363 TFSDMQKYG------IEPDDFTLGSVISSCANLASLEEGAQFHARALTSGLISFITVSNA 416
Query: 158 LINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKN 217
L+ YGK +ED+ +F+++ + V WTA + + G ++ F+ M +K +
Sbjct: 417 LVTLYGKCGSIEDSHRLFNEISFKDEVTWTALVSGYAQFGKANETIGLFESMLAHGLKPD 476
Query: 218 SYTFSSVLKAC--GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAER 275
TF VL AC G+ + GN + N I D Y C ++D++ + + +A
Sbjct: 477 KVTFIGVLSACSRAGLVEKGNQIFESMINEHGIVPIQDHYT-C-MIDLFSRAGRIEEARN 534
Query: 276 VFELIVDKKNIASWNAML 293
+ + SW +L
Sbjct: 535 FINKMPFSPDAISWATLL 552
>gi|414881651|tpg|DAA58782.1| TPA: putative pentatricopeptide repeat family protein [Zea mays]
Length = 736
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 89/287 (31%), Positives = 139/287 (48%), Gaps = 9/287 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL M+ G + A+++FD M R+ SWA M+ GY +E LF M+++
Sbjct: 164 LLNMYCKLGAVSDAKRVFDGMLHRNAVSWAAMVSGYATGKCSEEAFELFRLMLQKCP--- 220
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
L ++ VL A + + +G Q+HGL+ K G +S+ SL+ Y K C++ A
Sbjct: 221 -LEKNEFVTTAVLSAVSVPLGLLMGTQLHGLVLKDGLVGFVSVENSLVTMYAKAECMDAA 279
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
VF K N++ W+A I + G + F +M +TF VL AC
Sbjct: 280 MRVFGSSKERNSITWSAMITGYAQNGEANCAARMFLQMHSSGFTPTEFTFVGVLNAC--- 336
Query: 232 DDDGN--CGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
D G G+Q H +VK+G E+ YV+ LVDMY KC + DA+ F + D ++ W
Sbjct: 337 SDMGALVVGKQTHCLMVKLGFETQVYVKSALVDMYAKCGCIGDAKDGFHQLYDVDDVVLW 396
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
AM+ G+++NG + EA M GI + + AC+ ++A
Sbjct: 397 TAMITGHVQNGEHEEALMLYSRMDKQGIIPSYLTVTSVLRACACLAA 443
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 81/286 (28%), Positives = 130/286 (45%), Gaps = 8/286 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ +D A ++F R+ +W+ MI GY + +F +M
Sbjct: 264 NSLVTMYAKAECMDAAMRVFGSSKERNSITWSAMITGYAQNGEANCAARMFLQMHSSGFT 323
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
F V VL AC + +GKQ H L+ KLG + + +L++ Y K C+
Sbjct: 324 PTEFTF-----VGVLNACSDMGALVVGKQTHCLMVKLGFETQVYVKSALVDMYAKCGCIG 378
Query: 170 DADFVFSQLKRHNTVV-WTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
DA F QL + VV WTA I + + G + + M ++ I + T +SVL+AC
Sbjct: 379 DAKDGFHQLYDVDDVVLWTAMITGHVQNGEHEEALMLYSRMDKQGIIPSYLTVTSVLRAC 438
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
+ + G+Q+HA I+K V L MY KC L D+ VF + D +++ S
Sbjct: 439 ACLAAL-DLGKQLHAQILKCRFSLGGSVGTALSTMYSKCGNLEDSMVVFRRMPD-RDVIS 496
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
WN+++ + ++G +A MK G +L ACS +
Sbjct: 497 WNSIISVFSQHGRGSDALDMFEEMKLEGTAPDHITFINLLSACSHM 542
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 93/188 (49%), Gaps = 10/188 (5%)
Query: 52 LLLMHVSCGQLDTARQLFDEM-PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGH 110
L+ M+ CG + A+ F ++ + D W MI G+V +++E + L++ M K+
Sbjct: 367 LVDMYAKCGCIGDAKDGFHQLYDVDDVVLWTAMITGHVQNGEHEEALMLYSRMDKQG--- 423
Query: 111 MLLVFPAWIIVC-VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ P+++ V VL+AC C ++LGKQ+H + K S S+ +L Y K LE
Sbjct: 424 ---IIPSYLTVTSVLRACACLAALDLGKQLHAQILKCRFSLGGSVGTALSTMYSKCGNLE 480
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
D+ VF ++ + + W + I + G + F+EM E + TF ++L AC
Sbjct: 481 DSMVVFRRMPDRDVISWNSIISVFSQHGRGSDALDMFEEMKLEGTAPDHITFINLLSACS 540
Query: 230 --GVDDDG 235
G+ D G
Sbjct: 541 HMGLVDRG 548
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 95/205 (46%), Gaps = 6/205 (2%)
Query: 136 GKQVHGLLFKLGSS---RNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192
G H L KL SS N+ ++ +L+N Y K + DA VF + N V W A +
Sbjct: 139 GAVTHALACKLPSSCGSNNVFVSTALLNMYCKLGAVSDAKRVFDGMLHRNAVSWAAMVSG 198
Query: 193 NCREGHFHQVFNDFKEMGRE-RIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLE 251
+ F F+ M ++ ++KN + ++VL A V G Q+H ++K GL
Sbjct: 199 YATGKCSEEAFELFRLMLQKCPLEKNEFVTTAVLSAV-SVPLGLLMGTQLHGLVLKDGLV 257
Query: 252 SDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYL 311
V+ LV MY K + A RVF ++ +I +W+AM+ GY +NG A +
Sbjct: 258 GFVSVENSLVTMYAKAECMDAAMRVFGSSKERNSI-TWSAMITGYAQNGEANCAARMFLQ 316
Query: 312 MKASGIQIQESLINDLRIACSSISA 336
M +SG E + ACS + A
Sbjct: 317 MHSSGFTPTEFTFVGVLNACSDMGA 341
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 86/186 (46%), Gaps = 12/186 (6%)
Query: 136 GKQVHGLLFKLGSSRNISLTGSLINFYGKF-RCLEDADF-VFSQLKR--HNTVVWTAKIV 191
G+ +HG K G++ + ++ SLI FY R L A + VF+ + + W + ++
Sbjct: 33 GEALHGWALKSGAASHAPVSNSLITFYCSLPRPLLGAAYVVFADIPAALRDVASWNS-LL 91
Query: 192 NNCREGHFHQVFNDFKEM--GRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIG 249
N H + F+ M E + + ++F++ A V + G HA K+
Sbjct: 92 NPLSRHHPVSALSHFRSMMSSPEAVLPSPHSFAAAFTAAARV-PSASAGAVTHALACKLP 150
Query: 250 L---ESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEAT 306
++ +V L++MY K + DA+RVF+ ++ +N SW AM+ GY EA
Sbjct: 151 SSCGSNNVFVSTALLNMYCKLGAVSDAKRVFDGML-HRNAVSWAAMVSGYATGKCSEEAF 209
Query: 307 KFLYLM 312
+ LM
Sbjct: 210 ELFRLM 215
>gi|240255401|ref|NP_189042.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332643322|gb|AEE76843.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 665
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 91/329 (27%), Positives = 161/329 (48%), Gaps = 12/329 (3%)
Query: 6 LPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTA 65
+P Y L+K+CT K + HI + + + ++ N LL M+ CG L+ A
Sbjct: 56 IPADRRFYNTLLKKCTVFKLLIQGRIVHAHILQSI-FRHDIVMGNTLLNMYAKCGSLEEA 114
Query: 66 RQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLK 125
R++F++MP RDF +W +I GY + + F +M++ G+ F + V+K
Sbjct: 115 RKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRF--GYSPNEF---TLSSVIK 169
Query: 126 ACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVV 185
A G Q+HG K G N+ + +L++ Y ++ ++DA VF L+ N V
Sbjct: 170 AAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVS 229
Query: 186 WTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDG--NCGRQMHA 243
W A I + R + F+ M R+ + + ++++S+ AC G G+ +HA
Sbjct: 230 WNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSST---GFLEQGKWVHA 286
Query: 244 NIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYV 303
++K G + + L+DMY K + DA ++F+ + K+++ SWN++L Y ++G
Sbjct: 287 YMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLA-KRDVVSWNSLLTAYAQHGFGK 345
Query: 304 EATKFLYLMKASGIQIQESLINDLRIACS 332
EA + M+ GI+ E + ACS
Sbjct: 346 EAVWWFEEMRRVGIRPNEISFLSVLTACS 374
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 101/211 (47%), Gaps = 2/211 (0%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
+LK C + G+ VH + + +I + +L+N Y K LE+A VF ++ + +
Sbjct: 66 LLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRD 125
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
V WT I + F +M R N +T SSV+KA + G CG Q+H
Sbjct: 126 FVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAA-ERRGCCGHQLH 184
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
VK G +S+ +V L+D+Y + L+ DA+ VF+ + + +N SWNA++ G+ R
Sbjct: 185 GFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDAL-ESRNDVSWNALIAGHARRSGT 243
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIACSS 333
+A + M G + L ACSS
Sbjct: 244 EKALELFQGMLRDGFRPSHFSYASLFGACSS 274
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 112/246 (45%), Gaps = 14/246 (5%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR--KKG 109
LL ++ G +D A+ +FD + R+ SW +I G+ + ++ + LF M++ +
Sbjct: 202 LLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPS 261
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
H + + AC T +E GK VH + K G +L++ Y K +
Sbjct: 262 H-------FSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIH 314
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
DA +F +L + + V W + + + G + F+EM R I+ N +F SVL AC
Sbjct: 315 DARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACS 374
Query: 230 --GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
G+ D+G + + K G+ + + +VD+ G+ L A R E + + A
Sbjct: 375 HSGLLDEG---WHYYELMKKDGIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAA 431
Query: 288 SWNAML 293
W A+L
Sbjct: 432 IWKALL 437
>gi|255540253|ref|XP_002511191.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550306|gb|EEF51793.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 538
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 93/325 (28%), Positives = 152/325 (46%), Gaps = 8/325 (2%)
Query: 8 ITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQ 67
+ + Y L+ C + G +LN++ +P NR+LL+ V CG + AR+
Sbjct: 168 VGSSTYDALVSACIGLRSIPGVKRVLNYMLSN-GFEPDQYMANRVLLVQVKCGMMIHARK 226
Query: 68 LFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKAC 127
FDEMP R+ SW +I G VD+ DY+E LF M + F +++A
Sbjct: 227 WFDEMPERNLVSWNTIISGLVDMGDYKEAFRLFLIMWEEFSDAGSRTF-----ATMIQAS 281
Query: 128 VCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWT 187
+ +G+Q+H K+ +I ++ +LI+ YGK +EDA VF ++ N V W
Sbjct: 282 AGLGWISIGRQLHSCALKMEVGDDIFVSCALIDMYGKCGSIEDAHCVFDEMPERNIVAWN 341
Query: 188 AKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVK 247
I G+ + + EM ++ + +TFS V++ C + N +Q HA++++
Sbjct: 342 TIIAGYALHGYSEEALDMVYEMRNSGVRMDHFTFSIVVRICARL-ASLNYAKQAHASLLR 400
Query: 248 IGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATK 307
G SD LVD Y K + A VF+ + KN+ SWNA++ GY +G +A +
Sbjct: 401 HGFGSDIVANSALVDFYSKWGRVETARHVFDQM-PCKNVISWNALIAGYGNHGKGDDAIE 459
Query: 308 FLYLMKASGIQIQESLINDLRIACS 332
M I+ + ACS
Sbjct: 460 LFEQMLQERIRPNHVTFLAVLSACS 484
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 90/186 (48%), Gaps = 7/186 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ CG ++ A +FDEMP R+ +W +I GY +E + + EM R G
Sbjct: 312 LIDMYGKCGSIEDAHCVFDEMPERNIVAWNTIIAGYALHGYSEEALDMVYEM--RNSGVR 369
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+ F I+V + C ++ KQ H L + G +I +L++FY K+ +E A
Sbjct: 370 MDHFTFSIVV---RICARLASLNYAKQAHASLLRHGFGSDIVANSALVDFYSKWGRVETA 426
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--G 229
VF Q+ N + W A I G F++M +ERI+ N TF +VL AC
Sbjct: 427 RHVFDQMPCKNVISWNALIAGYGNHGKGDDAIELFEQMLQERIRPNHVTFLAVLSACSYS 486
Query: 230 GVDDDG 235
G+ + G
Sbjct: 487 GLSEHG 492
>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 716
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 82/289 (28%), Positives = 153/289 (52%), Gaps = 9/289 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ + CG +++ARQ FD + +D SW M+ Y + +Q+ + LFAEM M
Sbjct: 82 LIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAENDRFQDSLQLFAEM------RM 135
Query: 112 LLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
+ P + VLKAC+ +GK VHG + K ++ + L++ Y KF D
Sbjct: 136 VGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGVGLLDLYTKFGDAND 195
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
VF ++ +H+ + W+ I + + F +M R + N +TF+SVL++C
Sbjct: 196 VLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLPNQFTFASVLQSCAS 255
Query: 231 VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWN 290
+ ++ G+Q+H +++K+GL+ + +V L+D+Y KC L ++ ++F + + +N +WN
Sbjct: 256 I-ENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLF-MELPNRNEVTWN 313
Query: 291 AMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKI 339
M+VGY+++G +A M +Q E + + AC+S++A ++
Sbjct: 314 TMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAAMEL 362
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 81/265 (30%), Positives = 139/265 (52%), Gaps = 9/265 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL ++ G + ++F+EMP D W+ MI Y +E + LF +M +
Sbjct: 183 LLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRA----- 237
Query: 112 LLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
V P + VL++C N++LGKQVH + K+G N+ ++ +L++ Y K L++
Sbjct: 238 -FVLPNQFTFASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDN 296
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
+ +F +L N V W IV + G + + +K M +++ + T+SSVL+AC
Sbjct: 297 SMKLFMELPNRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACAS 356
Query: 231 VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWN 290
+ G Q+H+ +K + D V L+DMY KC +++A VF+++ ++ I SWN
Sbjct: 357 L-AAMELGTQIHSLSLKTIYDKDVVVGNALIDMYAKCGSIKNARLVFDMLSERDEI-SWN 414
Query: 291 AMLVGYIRNGLYVEATKFLYLMKAS 315
AM+ GY +GL EA K +M+ +
Sbjct: 415 AMISGYSMHGLVGEALKAFQMMQET 439
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/259 (28%), Positives = 124/259 (47%), Gaps = 13/259 (5%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
+V + + N L+ ++ CG+LD + +LF E+P R+ +W MIVGYV D + ++
Sbjct: 271 KVGLDGNVFVSNALMDVYAKCGRLDNSMKLFMELPNRNEVTWNTMIVGYVQSGDGDKALS 330
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
L+ M++ + + + + VL+AC MELG Q+H L K +++ + +L
Sbjct: 331 LYKNMLECQVQASEVTYSS-----VLRACASLAAMELGTQIHSLSLKTIYDKDVVVGNAL 385
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
I+ Y K +++A VF L + + W A I G + F+ M N
Sbjct: 386 IDMYAKCGSIKNARLVFDMLSERDEISWNAMISGYSMHGLVGEALKAFQMMQETECVPNK 445
Query: 219 YTFSSVLKAC---GGVDDDGNCGRQMHANIVKIGLES-DEYVQCGLVDMYGKCRLLRDAE 274
TF S+L AC G +D N + M + G+E E+ C +V + G+ L A
Sbjct: 446 LTFVSILSACSNAGLLDIGQNYFKSM---VQDYGIEPCMEHYTC-MVWLLGRSGHLDKAV 501
Query: 275 RVFELIVDKKNIASWNAML 293
++ E I + N+ W A+L
Sbjct: 502 KLIEEIPLEPNVKVWRALL 520
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/263 (27%), Positives = 119/263 (45%), Gaps = 7/263 (2%)
Query: 72 MPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTM 131
MP R+ S+ +I GYV E + LF+ + ++GH L F + +LK V
Sbjct: 1 MPDRNTVSFVTLIQGYVQSFQLDEVVDLFSRV--HREGHELNPF---VFTTILKLLVSVE 55
Query: 132 NMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIV 191
EL +H ++KLG N + +LI+ Y + A F + + V WT +
Sbjct: 56 CAELAYSLHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVA 115
Query: 192 NNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLE 251
F F EM N +TF+ VLKAC G+ + + G+ +H ++K E
Sbjct: 116 CYAENDRFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGL-EAFSVGKSVHGCVLKTCYE 174
Query: 252 SDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYL 311
D YV GL+D+Y K D RVFE + K ++ W+ M+ Y ++ EA +
Sbjct: 175 MDLYVGVGLLDLYTKFGDANDVLRVFEEM-PKHDVIPWSFMISRYAQSNQSREAVELFGQ 233
Query: 312 MKASGIQIQESLINDLRIACSSI 334
M+ + + + + +C+SI
Sbjct: 234 MRRAFVLPNQFTFASVLQSCASI 256
>gi|224126745|ref|XP_002319916.1| predicted protein [Populus trichocarpa]
gi|222858292|gb|EEE95839.1| predicted protein [Populus trichocarpa]
Length = 606
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 92/292 (31%), Positives = 151/292 (51%), Gaps = 12/292 (4%)
Query: 12 MYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQ-LDTARQLFD 70
Y L++ CT + +H K + N LL ++ G L AR++FD
Sbjct: 62 FYASLLQTCTKAVSFTHGIQFHSHAIKS-GLDTDRFVGNSLLALYFKLGPNLFEARRVFD 120
Query: 71 EMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCVLKACVC 129
+ +D SW MI GYV V ++ + LF EM+ L + P + + V+KAC
Sbjct: 121 GLFYKDLISWTSMITGYVKVEKPKKSLELFLEMLG------LGIEPNGFTLSAVIKACSG 174
Query: 130 TMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAK 189
++ LGK HG++ G N ++ +LI+ YG+ ++DA VF +L + + + WT+
Sbjct: 175 LGDLRLGKCFHGVVMVRGFDLNDVISTALIDMYGRNSAVDDAILVFVELPQPDAICWTSI 234
Query: 190 IVNNCREGHFHQVFNDFKEMGRER-IKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKI 248
I R + + F M R+ + + +TF +VL ACG + G+++HA ++
Sbjct: 235 ISAFTRNDVYDKALGFFYSMCRKHGLSPDGFTFGTVLTACGNLGRLKQ-GKEVHAKVITS 293
Query: 249 GLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
GL + +V+ LVDMYGKCRL+ ++ VF+ + KN+ SW A+L GY +NG
Sbjct: 294 GLSGNVFVESSLVDMYGKCRLVNQSQCVFDRM-SVKNLVSWTALLGGYCQNG 344
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 84/281 (29%), Positives = 133/281 (47%), Gaps = 10/281 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ +D A +F E+P D W +I + Y + + F M RK G
Sbjct: 203 LIDMYGRNSAVDDAILVFVELPQPDAICWTSIISAFTRNDVYDKALGFFYSMC-RKHG-- 259
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
L + VL AC ++ GK+VH + G S N+ + SL++ YGK R + +
Sbjct: 260 -LSPDGFTFGTVLTACGNLGRLKQGKEVHAKVITSGLSGNVFVESSLVDMYGKCRLVNQS 318
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
VF ++ N V WTA + C+ G F V F RE K ++Y+F +VL+AC G+
Sbjct: 319 QCVFDRMSVKNLVSWTALLGGYCQNGDFESVIRIF----REGKKVDTYSFGTVLRACAGL 374
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
G+++H VK D + LVD+Y KC + A R+F + + +N+ +WN+
Sbjct: 375 AAVRQ-GKEVHCQYVKRCCWRDVVTESALVDLYAKCGCIDFAYRIF-VRMSVRNLITWNS 432
Query: 292 MLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
M+ G+ +NG E + M GI+ + ACS
Sbjct: 433 MIYGFAQNGRGGEVFQLFDEMIEEGIRPDYISFVGVLFACS 473
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 112/246 (45%), Gaps = 13/246 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+ L+ M+ C ++ ++ +FD M +++ SW ++ GY D++ I +F E K
Sbjct: 303 SSLVDMYGKCRLVNQSQCVFDRMSVKNLVSWTALLGGYCQNGDFESVIRIFREGKK---- 358
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ VL+AC + GK+VH K R++ +L++ Y K C++
Sbjct: 359 -----VDTYSFGTVLRACAGLAAVRQGKEVHCQYVKRCCWRDVVTESALVDLYAKCGCID 413
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC- 228
A +F ++ N + W + I + G +VF F EM E I+ + +F VL AC
Sbjct: 414 FAYRIFVRMSVRNLITWNSMIYGFAQNGRGGEVFQLFDEMIEEGIRPDYISFVGVLFACS 473
Query: 229 -GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
G+ D G + +I E+ C ++D+ G+ LL +AE + E + +
Sbjct: 474 HAGLVDQGKKYFAAMTEVYEIK-PGIEHYNC-MIDLLGRAGLLEEAENLIENANCRDEPS 531
Query: 288 SWNAML 293
W +L
Sbjct: 532 LWTVLL 537
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 73/147 (49%), Gaps = 3/147 (2%)
Query: 189 KIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKI 248
KI+ C+ G + + + R+ + ++S+L+ C + G Q H++ +K
Sbjct: 31 KIIQYCKSGSLFEAIHVLNSIDWTRLSNKPFFYASLLQTCTKAVSFTH-GIQFHSHAIKS 89
Query: 249 GLESDEYVQCGLVDMYGKCRL-LRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATK 307
GL++D +V L+ +Y K L +A RVF+ + K++ SW +M+ GY++ ++ +
Sbjct: 90 GLDTDRFVGNSLLALYFKLGPNLFEARRVFDGLF-YKDLISWTSMITGYVKVEKPKKSLE 148
Query: 308 FLYLMKASGIQIQESLINDLRIACSSI 334
M GI+ ++ + ACS +
Sbjct: 149 LFLEMLGLGIEPNGFTLSAVIKACSGL 175
>gi|242045096|ref|XP_002460419.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
gi|241923796|gb|EER96940.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
Length = 635
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 96/333 (28%), Positives = 154/333 (46%), Gaps = 20/333 (6%)
Query: 6 LPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTA 65
L T +Y +I C K+ AGA + +H+ R + LN L+ M+ CG + A
Sbjct: 58 LAPTPRVYHSIITACAQSKNLAGARAIHSHL-SRSRLAGDGFLLNSLIHMYCKCGAVSDA 116
Query: 66 RQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK---RKKGHMLLVFPAWIIVC 122
R +FD +P RD SW +I GY E + L +M++ R G F
Sbjct: 117 RHVFDGIPTRDVVSWTYLITGYAQNDMPAEALGLLPDMLRARFRPSGFTFTSF------- 169
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
LKA +G+Q+H L K ++ + +L++ Y + + ++ A VF L N
Sbjct: 170 -LKAAGACGGRGIGEQMHALAVKYNLDEDVYVGSALLDMYARCQQMDMAIRVFDWLDSKN 228
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA---CGGVDDDGNCGR 239
V W A I R+G F EM R +T+SSV A G ++ GR
Sbjct: 229 EVSWNALIAGFARKGDGETTLMKFAEMQRNGFGATHFTYSSVFSALARIGALEQ----GR 284
Query: 240 QMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRN 299
+HA+++K G + +V ++ MY K + DA +VF+ VD++++ +WN ML + +
Sbjct: 285 WVHAHMIKSGQKLTAFVANTILGMYAKSGSMVDARKVFDR-VDQRDLVTWNTMLTAFAQY 343
Query: 300 GLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
GL EA ++ GIQ+ + + ACS
Sbjct: 344 GLGKEAVAHFEEIRKYGIQLNQITFLSVLTACS 376
>gi|356502497|ref|XP_003520055.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Glycine max]
Length = 852
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 94/304 (30%), Positives = 148/304 (48%), Gaps = 32/304 (10%)
Query: 45 TLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMM 104
++ N+LL GQ+D AR+LFD+M RD +W M+ GY +V E LF
Sbjct: 114 SIFHSNQLLNGLSKSGQIDDARELFDKMLQRDEYTWNTMVSGYANVGRLVEARELFNGFS 173
Query: 105 KR----------------KKGHMLLVF---------PA-WIIVCVLKACVCTMNMELGKQ 138
R ++ +F P+ + + +L+ C ++ G+
Sbjct: 174 SRSSITWSSLISGYCRFGRQAEAFDLFKRMRLEGQKPSQYTLGSILRGCSALGLIQKGEM 233
Query: 139 VHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL--KRHNTVVWTAKIVNNCRE 196
+HG + K G N+ + L++ Y K R + +A+ +F L + N V+WTA + +
Sbjct: 234 IHGYVVKNGFESNVYVVAGLVDMYAKCRHISEAEILFKGLAFNKGNHVLWTAMVTGYAQN 293
Query: 197 GHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC-GRQMHANIVKIGLESDEY 255
G H+ F+ M E ++ N +TF S+L AC V +C G Q+H IV+ G + Y
Sbjct: 294 GDDHKAIEFFRYMHTEGVESNQFTFPSILTACSSV--SAHCFGEQVHGCIVRNGFGCNAY 351
Query: 256 VQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKAS 315
VQ LVDMY KC L A+RV E + D ++ SWN+M+VG +R+G EA M A
Sbjct: 352 VQSALVDMYAKCGDLGSAKRVLENMED-DDVVSWNSMIVGCVRHGFEEEAILLFKKMHAR 410
Query: 316 GIQI 319
++I
Sbjct: 411 NMKI 414
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 82/288 (28%), Positives = 132/288 (45%), Gaps = 15/288 (5%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNS--WAVMIVGYVDVADYQECITLFAEMMKRKKG 109
L+ M+ C + A LF + N W M+ GY D + I F M
Sbjct: 253 LVDMYAKCRHISEAEILFKGLAFNKGNHVLWTAMVTGYAQNGDDHKAIEFFRYMHTEGVE 312
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
FP+ + C + C G+QVHG + + G N + +L++ Y K L
Sbjct: 313 SNQFTFPSILTACSSVSAHC-----FGEQVHGCIVRNGFGCNAYVQSALVDMYAKCGDLG 367
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC- 228
A V ++ + V W + IV R G + FK+M +K + YTF SVL C
Sbjct: 368 SAKRVLENMEDDDVVSWNSMIVGCVRHGFEEEAILLFKKMHARNMKIDHYTFPSVLNCCI 427
Query: 229 -GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
G +D G+ +H ++K G E+ + V LVDMY K L A VFE + + K++
Sbjct: 428 VGRID-----GKSVHCLVIKTGFENYKLVSNALVDMYAKTEDLNCAYAVFEKMFE-KDVI 481
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
SW +++ GY +NG + E+ K M+ SG+ + ++ + AC+ ++
Sbjct: 482 SWTSLVTGYTQNGSHEESLKTFCDMRISGVSPDQFIVASILSACAELT 529
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/262 (29%), Positives = 129/262 (49%), Gaps = 9/262 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ CG L +A+++ + M D SW MIVG V +E I LF +M R
Sbjct: 356 LVDMYAKCGDLGSAKRVLENMEDDDVVSWNSMIVGCVRHGFEEEAILLFKKMHARNMKID 415
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
FP+ + C++ GK VH L+ K G ++ +L++ Y K L A
Sbjct: 416 HYTFPSVLNCCIVGRID-------GKSVHCLVIKTGFENYKLVSNALVDMYAKTEDLNCA 468
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
VF ++ + + WT+ + + G + F +M + + + +S+L AC +
Sbjct: 469 YAVFEKMFEKDVISWTSLVTGYTQNGSHEESLKTFCDMRISGVSPDQFIVASILSACAEL 528
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
G+Q+H++ +K+GL S V LV MY KC L DA+ +F + + +++ +W A
Sbjct: 529 TLL-EFGKQVHSDFIKLGLRSSLSVNNSLVTMYAKCGCLDDADAIF-VSMHVRDVITWTA 586
Query: 292 MLVGYIRNGLYVEATKFLYLMK 313
++VGY RNG ++ K+ MK
Sbjct: 587 LIVGYARNGKGRDSLKYFQQMK 608
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 96/181 (53%), Gaps = 2/181 (1%)
Query: 157 SLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKK 216
++++ Y L +A +F+ +++ W++ I CR G + F+ FK M E K
Sbjct: 151 TMVSGYANVGRLVEARELFNGFSSRSSITWSSLISGYCRFGRQAEAFDLFKRMRLEGQKP 210
Query: 217 NSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERV 276
+ YT S+L+ C + G +H +VK G ES+ YV GLVDMY KCR + +AE +
Sbjct: 211 SQYTLGSILRGCSALGLIQK-GEMIHGYVVKNGFESNVYVVAGLVDMYAKCRHISEAEIL 269
Query: 277 FE-LIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
F+ L +K N W AM+ GY +NG +A +F M G++ + + ACSS+S
Sbjct: 270 FKGLAFNKGNHVLWTAMVTGYAQNGDDHKAIEFFRYMHTEGVESNQFTFPSILTACSSVS 329
Query: 336 A 336
A
Sbjct: 330 A 330
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 110/250 (44%), Gaps = 42/250 (16%)
Query: 47 LFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR 106
L N L+ M+ L+ A +F++M +D SW ++ GY ++E + F +M R
Sbjct: 450 LVSNALVDMYAKTEDLNCAYAVFEKMFEKDVISWTSLVTGYTQNGSHEESLKTFCDM--R 507
Query: 107 KKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
G V P +I+ +L AC +E GKQVH KLG ++S+ SL+ Y K
Sbjct: 508 ISG----VSPDQFIVASILSACAELTLLEFGKQVHSDFIKLGLRSSLSVNNSLVTMYAKC 563
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
CL+DAD +F + + + WTA IV R G GR+ +K + +
Sbjct: 564 GCLDDADAIFVSMHVRDVITWTALIVGYARNGK-----------GRDSLK-----YFQQM 607
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
K G++ E+ C ++D++G+ L +A+ + + K +
Sbjct: 608 KKIYGIE------------------PGPEHYAC-MIDLFGRLGKLDEAKEILNQMDVKPD 648
Query: 286 IASWNAMLVG 295
W A+L
Sbjct: 649 ATVWKALLAA 658
Score = 45.1 bits (105), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
++ ++ +L N L+ M+ CG LD A +F M +RD +W +IVGY ++ +
Sbjct: 543 KLGLRSSLSVNNSLVTMYAKCGCLDDADAIFVSMHVRDVITWTALIVGYARNGKGRDSLK 602
Query: 99 LFAEMMK 105
F +M K
Sbjct: 603 YFQQMKK 609
>gi|302756099|ref|XP_002961473.1| hypothetical protein SELMODRAFT_77426 [Selaginella moellendorffii]
gi|300170132|gb|EFJ36733.1| hypothetical protein SELMODRAFT_77426 [Selaginella moellendorffii]
Length = 643
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 90/306 (29%), Positives = 143/306 (46%), Gaps = 10/306 (3%)
Query: 7 PITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTAR 66
I + ++++C +D A + I R N L+ + CG + AR
Sbjct: 9 AIAISSHASILRDCASARDLTAAKQAQWEI-ARDGFGGDRYLGNLLVQAYGKCGSVRDAR 67
Query: 67 QLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKA 126
++FD + R+ SW +M+ Y D +E + LF E+ R + +V LKA
Sbjct: 68 EVFDRIQRRNIFSWTIMLGAYADNGHGREALGLFREIQSRG-----MAIDNVTLVSALKA 122
Query: 127 CVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVW 186
C ++E G+ +H LG I + +L++ YGK LE+A VF+ L N V W
Sbjct: 123 CAVAGDLEEGRGIHASARSLGYESEIIVATALVSMYGKCGHLEEAKAVFATLVERNRVSW 182
Query: 187 TAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIV 246
A + + GH + ++ M E IK ++ TF SVL G +G G ++H ++
Sbjct: 183 NAMLAAYAQNGHCEEAVRLYRLMCFEGIKPDATTFVSVLD---GWKGEGEHGTRIHDQVL 239
Query: 247 KIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEAT 306
+ G S+ + LV MYG + DA VF+ I + K + SWNAML Y +NG Y +A
Sbjct: 240 ESGFGSNTTLANALVSMYGSGGRVDDARYVFDGIAE-KTVVSWNAMLTAYAQNGRYGKAV 298
Query: 307 KFLYLM 312
+ M
Sbjct: 299 DLFWKM 304
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 87/284 (30%), Positives = 140/284 (49%), Gaps = 5/284 (1%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ S G++D AR +FD + + SW M+ Y Y + + LF +M + ++
Sbjct: 251 NALVSMYGSGGRVDDARYVFDGIAEKTVVSWNAMLTAYAQNGRYGKAVDLFWKMDEMRRA 310
Query: 110 HMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
LV P + V +L AC T +E G+++H + LG +S+ G+LIN Y + L
Sbjct: 311 ---LVEPNSVTFVNLLVACAATGFLEAGRKIHAEVASLGLLSTLSVGGALINMYSECGNL 367
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
A VF + N V W I + +G + ++M E +K + +TF SVL AC
Sbjct: 368 VLAKSVFDSVPHKNLVSWNVLIGSYAGDGDGKEALGVHQKMELEGLKPDKFTFISVLHAC 427
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
+ G+ +HA I GLE DE + L+++YGKC L A VF + ++N+ +
Sbjct: 428 SASEALAE-GKAIHALIAASGLERDEAIGTALINLYGKCGSLEQARNVFLDMKSRRNLVT 486
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
WN+ML G + + +++M GI E + ACS
Sbjct: 487 WNSMLAAACTKGGLEDCVEIIHMMGLEGIMPDELTFLSVLFACS 530
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 80/306 (26%), Positives = 135/306 (44%), Gaps = 20/306 (6%)
Query: 38 KRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECI 97
+ + + ++ L+ M+ CG L+ A+ +F + R+ SW M+ Y +E +
Sbjct: 140 RSLGYESEIIVATALVSMYGKCGHLEEAKAVFATLVERNRVSWNAMLAAYAQNGHCEEAV 199
Query: 98 TLFA----EMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNIS 153
L+ E +K + V W E G ++H + + G N +
Sbjct: 200 RLYRLMCFEGIKPDATTFVSVLDGW-----------KGEGEHGTRIHDQVLESGFGSNTT 248
Query: 154 LTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKI---VNNCREGHFHQVFNDFKEMG 210
L +L++ YG ++DA +VF + V W A + N R G +F EM
Sbjct: 249 LANALVSMYGSGGRVDDARYVFDGIAEKTVVSWNAMLTAYAQNGRYGKAVDLFWKMDEMR 308
Query: 211 RERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLL 270
R ++ NS TF ++L AC GR++HA + +GL S V L++MY +C L
Sbjct: 309 RALVEPNSVTFVNLLVACAATGFL-EAGRKIHAEVASLGLLSTLSVGGALINMYSECGNL 367
Query: 271 RDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIA 330
A+ VF+ V KN+ SWN ++ Y +G EA M+ G++ + + A
Sbjct: 368 VLAKSVFD-SVPHKNLVSWNVLIGSYAGDGDGKEALGVHQKMELEGLKPDKFTFISVLHA 426
Query: 331 CSSISA 336
CS+ A
Sbjct: 427 CSASEA 432
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 97/196 (49%), Gaps = 2/196 (1%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
+L+ C ++ KQ + + G + L L+ YGK + DA VF +++R N
Sbjct: 18 ILRDCASARDLTAAKQAQWEIARDGFGGDRYLGNLLVQAYGKCGSVRDAREVFDRIQRRN 77
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
WT + GH + F+E+ + ++ T S LKAC V D GR +H
Sbjct: 78 IFSWTIMLGAYADNGHGREALGLFREIQSRGMAIDNVTLVSALKAC-AVAGDLEEGRGIH 136
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
A+ +G ES+ V LV MYGKC L +A+ VF +V++ + SWNAML Y +NG
Sbjct: 137 ASARSLGYESEIIVATALVSMYGKCGHLEEAKAVFATLVERNRV-SWNAMLAAYAQNGHC 195
Query: 303 VEATKFLYLMKASGIQ 318
EA + LM GI+
Sbjct: 196 EEAVRLYRLMCFEGIK 211
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 74/257 (28%), Positives = 114/257 (44%), Gaps = 20/257 (7%)
Query: 45 TLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMM 104
TL L+ M+ CG L A+ +FD +P ++ SW V+I Y D +E + + +M
Sbjct: 350 TLSVGGALINMYSECGNLVLAKSVFDSVPHKNLVSWNVLIGSYAGDGDGKEALGVHQKME 409
Query: 105 KRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
L + + VL AC + + GK +H L+ G R+ ++ +LIN YGK
Sbjct: 410 LEG-----LKPDKFTFISVLHACSASEALAEGKAIHALIAASGLERDEAIGTALINLYGK 464
Query: 165 FRCLEDADFVFSQLK-RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSS 223
LE A VF +K R N V W + + C +G MG E I + TF S
Sbjct: 465 CGSLEQARNVFLDMKSRRNLVTWNSMLAAACTKGGLEDCVEIIHMMGLEGIMPDELTFLS 524
Query: 224 VLKAC--GGVDDDG-----NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERV 276
VL AC GG G + G V G+ ++ +VD+ G+ L +A+ V
Sbjct: 525 VLFACSHGGSIQQGLDLFLSAG-------VDYGIATNTKHYVCVVDILGRVGRLEEAQEV 577
Query: 277 FELIVDKKNIASWNAML 293
+ + N +W +L
Sbjct: 578 LNRMPFQANDVAWMTLL 594
>gi|297829922|ref|XP_002882843.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297328683|gb|EFH59102.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 627
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 87/270 (32%), Positives = 139/270 (51%), Gaps = 7/270 (2%)
Query: 44 PTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEM 103
P RLL+ + C L+ AR++ DEMP ++ SW MI Y E +++FAEM
Sbjct: 84 PATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALSVFAEM 143
Query: 104 MKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYG 163
M+ F VL +C+ + LGKQ+HGL+ K +I + SL++ Y
Sbjct: 144 MRSDGKPNEFTF-----ATVLTSCIRASGLALGKQIHGLIVKWNYDSHIFVGSSLLDMYA 198
Query: 164 KFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSS 223
K +E+A +F L + V TA I + G + F+ + E ++ N T++S
Sbjct: 199 KAGQIEEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFQRLQSEGMRPNYVTYAS 258
Query: 224 VLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
+L A G+ + G+Q H ++++ L +Q L+DMY KC L A+R+F+ + ++
Sbjct: 259 LLTALSGLALLDH-GKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYAQRLFDNMPER 317
Query: 284 KNIASWNAMLVGYIRNGLYVEATKFLYLMK 313
I SWNAMLVGY ++GL E + LM+
Sbjct: 318 TAI-SWNAMLVGYSKHGLGREVLELFRLMR 346
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 108/215 (50%), Gaps = 4/215 (1%)
Query: 122 CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH 181
+L AC+ + G++VH + K L L+ FYGK CLEDA V ++
Sbjct: 56 ALLNACLDKRALREGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEK 115
Query: 182 NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDG-NCGRQ 240
N V WTA I + GH + + F EM R K N +TF++VL +C + G G+Q
Sbjct: 116 NVVSWTAMISRYSQTGHSSEALSVFAEMMRSDGKPNEFTFATVLTSC--IRASGLALGKQ 173
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
+H IVK +S +V L+DMY K + +A +FE + + +++ S A++ GY + G
Sbjct: 174 IHGLIVKWNYDSHIFVGSSLLDMYAKAGQIEEAREIFECLPE-RDVVSCTAIIAGYAQLG 232
Query: 301 LYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
L EA + +++ G++ L A S ++
Sbjct: 233 LDEEALEMFQRLQSEGMRPNYVTYASLLTALSGLA 267
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/267 (25%), Positives = 122/267 (45%), Gaps = 22/267 (8%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL M+ GQ++ AR++F+ +P RD S +I GY + +E + +F +
Sbjct: 193 LLDMYAKAGQIEEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFQRLQSEG---- 248
Query: 112 LLVFPAWIIVCVLKACVCTMNM-ELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
+ P ++ L + + + + GKQ H + + L SLI+ Y K L
Sbjct: 249 --MRPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSY 306
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRE-RIKKNSYTFSSVLKAC- 228
A +F + + W A +V + G +V F+ M E R+K ++ T +VL C
Sbjct: 307 AQRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCS 366
Query: 229 -GGVDDDGNCGRQMHANIV--KIGLESD-EYVQCGLVDMYGKCRLLRDAERVFELI--VD 282
G ++D G ++ +V + G++ D E+ C +VDM G+ + +A FE I +
Sbjct: 367 HGKMED---TGLSIYDGMVAGEYGIKPDTEHYGC-IVDMLGRAGRIDEA---FEFIKRMP 419
Query: 283 KKNIASWNAMLVGYIRNGLYVEATKFL 309
K A L+G R L V+ +++
Sbjct: 420 SKPTAGVLGSLLGACRVHLSVDIGEYV 446
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 65/149 (43%), Gaps = 8/149 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ CG L A++LFD MP R SW M+VGY +E + LF M K+
Sbjct: 292 NSLIDMYSKCGNLSYAQRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKR- 350
Query: 110 HMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLF--KLGSSRNISLTGSLINFYGKFR 166
V P A ++ VL C + G ++ + + G + G +++ G+
Sbjct: 351 ----VKPDAVTLLAVLSGCSHGKMEDTGLSIYDGMVAGEYGIKPDTEHYGCIVDMLGRAG 406
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCR 195
+++A ++ T ++ CR
Sbjct: 407 RIDEAFEFIKRMPSKPTAGVLGSLLGACR 435
>gi|302774719|ref|XP_002970776.1| hypothetical protein SELMODRAFT_94128 [Selaginella moellendorffii]
gi|300161487|gb|EFJ28102.1| hypothetical protein SELMODRAFT_94128 [Selaginella moellendorffii]
Length = 750
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 94/323 (29%), Positives = 143/323 (44%), Gaps = 32/323 (9%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
++ I L ++ M++SCG LD AR LFD +P +D W +I Y +QE I
Sbjct: 167 QMGIAEQLPLAKFIVQMYLSCGSLDEARNLFDLLPSKDVGMWTAVIAAYAKYGRWQEAIK 226
Query: 99 LFAEMMKRKKGHMLLVFPAWI------------------------------IVCVLKACV 128
LF M R + +LV+ A I + L C
Sbjct: 227 LFETMESRTGPYSVLVWNAIISASFQNGQLKGSLELFWKMRRQGVRPDSLTLATALDTCA 286
Query: 129 CTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTA 188
+ N+ G+ V L+ G N + SL++ YGK L+DA VF + VVW+
Sbjct: 287 ASGNLHEGRMVAELVTVYGLQSNDLVNSSLVHMYGKCGSLDDARRVFDGMAHRGPVVWSK 346
Query: 189 KIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKI 248
I GH + F KEM ++ ++ + + L+ACG + G+++H I
Sbjct: 347 MIAAYSEHGHCSEAFVLLKEMESAKMVADASSCVAFLQACGSLLAL-EAGQEVHGWITMK 405
Query: 249 GLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKF 308
GLE D +V LVDMYGKC + +A VF+ + +KN SWN M+ Y +G EA +
Sbjct: 406 GLEQDVFVGNALVDMYGKCGSVEEAWAVFDNM-KEKNWFSWNFMVEAYCSSGYSTEAIQV 464
Query: 309 LYLMKASGIQIQESLINDLRIAC 331
M G++ + +AC
Sbjct: 465 FLQMLQEGVKPNAKTFTSVLVAC 487
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/259 (28%), Positives = 121/259 (46%), Gaps = 32/259 (12%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+ L+ M+ CG LD AR++FD M R W+ MI Y + E L EM K
Sbjct: 314 SSLVHMYGKCGSLDDARRVFDGMAHRGPVVWSKMIAAYSEHGHCSEAFVLLKEMESAK-- 371
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+V A V L+AC + +E G++VHG + G +++ + +L++ YGK +E
Sbjct: 372 ---MVADASSCVAFLQACGSLLALEAGQEVHGWITMKGLEQDVFVGNALVDMYGKCGSVE 428
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
+A VF +K N W + C G+ + F +M +E +K N+ TF+SVL ACG
Sbjct: 429 EAWAVFDNMKEKNWFSWNFMVEAYCSSGYSTEAIQVFLQMLQEGVKPNAKTFTSVLVACG 488
Query: 230 GVDDDGNCGRQMHANIVKIG------LESD-------EYVQCGLVDMYGKCRLLRDAERV 276
HA ++ G + SD E+ C V + G+ +++AE
Sbjct: 489 ------------HAGFIREGILHLVYMSSDYDVVPIAEHYACA-VGLLGRSGWVKEAEEY 535
Query: 277 FELIVDKKNIASWNAMLVG 295
+ + D + + W+A++
Sbjct: 536 VKKLPDAE-ASVWDALVTA 553
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 78/324 (24%), Positives = 141/324 (43%), Gaps = 36/324 (11%)
Query: 43 KPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAE 102
P + N L++ + G+L ARQ F++MP ++ W +I +F +
Sbjct: 74 SPNIFSWNLLVVAYTQNGRLREARQCFEKMPGKNVVCWTGLITANAQSGYVLSARGVFEK 133
Query: 103 MMKRKKGHMLLVFPAWIIVC---VLKACVCT---MNMELGKQVHGL-------------- 142
M +R + + W +V V++A + + M + +Q+
Sbjct: 134 MPQRNR--VTWTAMVWCLVNAGDVIEAKIIHEQLVQMGIAEQLPLAKFIVQMYLSCGSLD 191
Query: 143 ----LFKLGSSRNISLTGSLINFYGKFRCLEDADFVF----SQLKRHNTVVWTAKIVNNC 194
LF L S+++ + ++I Y K+ ++A +F S+ ++ +VW A I +
Sbjct: 192 EARNLFDLLPSKDVGMWTAVIAAYAKYGRWQEAIKLFETMESRTGPYSVLVWNAIISASF 251
Query: 195 REGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC--GRQMHANIVKIGLES 252
+ G F +M R+ ++ +S T ++ L C GN GR + + GL+S
Sbjct: 252 QNGQLKGSLELFWKMRRQGVRPDSLTLATALDTCAA---SGNLHEGRMVAELVTVYGLQS 308
Query: 253 DEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLM 312
++ V LV MYGKC L DA RVF+ + + + W+ M+ Y +G EA L M
Sbjct: 309 NDLVNSSLVHMYGKCGSLDDARRVFDGMAHRGPVV-WSKMIAAYSEHGHCSEAFVLLKEM 367
Query: 313 KASGIQIQESLINDLRIACSSISA 336
+++ + S AC S+ A
Sbjct: 368 ESAKMVADASSCVAFLQACGSLLA 391
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 56/105 (53%), Gaps = 2/105 (1%)
Query: 221 FSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELI 280
+S+++ACG D G+++HA+I L + ++ LV+MYGKC L DA RVF+ I
Sbjct: 14 LASIVRACGS-SRDLIAGKRIHAHIADANLGNYRFLANLLVEMYGKCGSLHDARRVFDSI 72
Query: 281 VDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLIN 325
NI SWN ++V Y +NG EA + M + LI
Sbjct: 73 -HSPNIFSWNLLVVAYTQNGRLREARQCFEKMPGKNVVCWTGLIT 116
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/237 (20%), Positives = 97/237 (40%), Gaps = 37/237 (15%)
Query: 108 KGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
GH+ V+ + +++AC + ++ GK++H + L L+ YGK
Sbjct: 4 PGHLDRVYEH--LASIVRACGSSRDLIAGKRIHAHIADANLGNYRFLANLLVEMYGKCGS 61
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERI------------- 214
L DA VF + N W +V + G + F++M + +
Sbjct: 62 LHDARRVFDSIHSPNIFSWNLLVVAYTQNGRLREARQCFEKMPGKNVVCWTGLITANAQS 121
Query: 215 --------------KKNSYTFSSV---LKACGGVDDDGNCGRQMHANIVKIGLESDEYVQ 257
++N T++++ L G V + + +H +V++G+ +
Sbjct: 122 GYVLSARGVFEKMPQRNRVTWTAMVWCLVNAGDVIE----AKIIHEQLVQMGIAEQLPLA 177
Query: 258 CGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKA 314
+V MY C L +A +F+L+ K++ W A++ Y + G + EA K M++
Sbjct: 178 KFIVQMYLSCGSLDEARNLFDLL-PSKDVGMWTAVIAAYAKYGRWQEAIKLFETMES 233
>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
Length = 743
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 94/326 (28%), Positives = 158/326 (48%), Gaps = 39/326 (11%)
Query: 43 KPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAE 102
+P N +L + G L T +++F MP RD SW +I GYV E + +
Sbjct: 68 QPNSFSWNTMLSAYSKSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNS 127
Query: 103 MMKRKKGHM-LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINF 161
MMK ++ + F +++ + CV +LG+Q+HG + K G + + SL++
Sbjct: 128 MMKDGVLNLNRITFSTMLLLVSSQGCV-----DLGRQIHGQIVKFGFGAYVFVGSSLVDM 182
Query: 162 YGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGH-------FH-------------- 200
Y K + A VF +++ N V++ I R G FH
Sbjct: 183 YAKMGLVSVASQVFDEVQERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMI 242
Query: 201 ----------QVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGL 250
+ + F++M +E + + YTF SVL ACGG+ G+++H I++ G
Sbjct: 243 TGLIQNGLEAEAMDLFRDMRQEGMAMDQYTFGSVLTACGGLRALKE-GKEIHTLIIRSGY 301
Query: 251 ESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLY 310
+ +V LVDMY KCR +R AE VF+ + + KN+ SW AMLVGY +NG EA +
Sbjct: 302 NHNVFVGSALVDMYCKCRSVRYAEAVFKRMAN-KNVVSWTAMLVGYGQNGFSEEAVRVFC 360
Query: 311 LMKASGIQIQESLINDLRIACSSISA 336
M+ +GI+ + + + +C+++++
Sbjct: 361 DMQRNGIEPDDFTLGSVISSCANLAS 386
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 78/304 (25%), Positives = 143/304 (47%), Gaps = 12/304 (3%)
Query: 29 AFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYV 88
A ++ + +++R ++ N ++ + G + +++LF M RD SW MI G +
Sbjct: 192 ASQVFDEVQER-----NVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLI 246
Query: 89 DVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGS 148
E + LF +M R++G + + VL AC ++ GK++H L+ + G
Sbjct: 247 QNGLEAEAMDLFRDM--RQEG---MAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRSGY 301
Query: 149 SRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKE 208
+ N+ + +L++ Y K R + A+ VF ++ N V WTA +V + G + F +
Sbjct: 302 NHNVFVGSALVDMYCKCRSVRYAEAVFKRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCD 361
Query: 209 MGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCR 268
M R I+ + +T SV+ +C + G Q H + GL S V L+ +YGKC
Sbjct: 362 MQRNGIEPDDFTLGSVISSCANLASLEE-GAQFHCQALVSGLISFITVSNALITLYGKCG 420
Query: 269 LLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLR 328
+ D+ ++F+ + + + SW A++ GY + G E M G++ +
Sbjct: 421 SIEDSNQLFDEMSFRDEV-SWTALVSGYAQFGKANETIDLFERMLVQGLKPDAVTFIAVL 479
Query: 329 IACS 332
ACS
Sbjct: 480 SACS 483
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 97/220 (44%), Gaps = 32/220 (14%)
Query: 125 KACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTV 184
K C T N K++H L+ K ++ L +LIN Y K + A VF ++ + N+
Sbjct: 13 KLCCETRNQTQAKKLHCLIIKSLTNPETFLYNNLINAYSKLGNITYARHVFDKMPQPNSF 72
Query: 185 VWTAKIVNNCREGHFHQVFNDFKEM-GRERIKKNSYT-----FSSVLKACGGVDD---DG 235
W + + G + F M R+ + NS + SV++A + DG
Sbjct: 73 SWNTMLSAYSKSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDG 132
Query: 236 ----------------------NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDA 273
+ GRQ+H IVK G + +V LVDMY K L+ A
Sbjct: 133 VLNLNRITFSTMLLLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVA 192
Query: 274 ERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMK 313
+VF+ V ++N+ +N M+ G +R+G+ ++ + + MK
Sbjct: 193 SQVFDE-VQERNVVMYNTMITGLLRSGMVKDSKRLFHGMK 231
>gi|147856409|emb|CAN80331.1| hypothetical protein VITISV_018275 [Vitis vinifera]
Length = 681
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 90/295 (30%), Positives = 142/295 (48%), Gaps = 10/295 (3%)
Query: 44 PTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEM 103
P N L+ M+ CG+LD A +LFD MP R+ SW MI G + + E I F M
Sbjct: 38 PCTFLTNHLVNMYSKCGELDHALKLFDTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGM 97
Query: 104 MKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYG 163
R G + F ++AC ++E+GKQ+H L K G + + +L + Y
Sbjct: 98 --RICGEVPTQFA---FSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYS 152
Query: 164 KFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSS 223
K + DA VF ++ + V WTA I + G F + FK+M E + + + S
Sbjct: 153 KCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCS 212
Query: 224 VLKACGGVDDDGNC--GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIV 281
L ACG + C GR +H+++VK+G ESD +V L DMY K + A VF +
Sbjct: 213 TLGACGALK---ACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDS 269
Query: 282 DKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+ +N+ S+ ++ GY+ + ++ GI+ E + L AC++ +A
Sbjct: 270 ECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAA 324
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 97/334 (29%), Positives = 160/334 (47%), Gaps = 16/334 (4%)
Query: 4 LCLPITTDM-YTCLIKECTFQKDSAGAFEL---LNHIRKRVNIKPTLLFLNRLLLMHVSC 59
+C + T ++ I+ C S G+ E+ ++ + + I L + L M+ C
Sbjct: 99 ICGEVPTQFAFSSAIRACA----SLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKC 154
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI 119
G + A ++F+EMP +D SW MI GY + +++E + F +M+ + + +
Sbjct: 155 GAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEE-----VTIDQHV 209
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFS-QL 178
+ L AC + G+ VH + KLG +I + +L + Y K +E A VF
Sbjct: 210 LCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDS 269
Query: 179 KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCG 238
+ N V +T I + + F E+ R+ I+ N +TFSS++KAC G
Sbjct: 270 ECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACAN-QAALEQG 328
Query: 239 RQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIR 298
Q+HA ++KI + D +V LVDMYGKC LL A + F+ I D IA WN+++ + +
Sbjct: 329 TQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEHAIQAFDEIGDPTEIA-WNSLVSVFGQ 387
Query: 299 NGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+GL +A KF M G++ L CS
Sbjct: 388 HGLGKDAIKFFERMVDRGVKPNAITFISLLTGCS 421
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/218 (30%), Positives = 101/218 (46%), Gaps = 2/218 (0%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
V++ T + GKQ+H LL G + LT L+N Y K L+ A +F + + N
Sbjct: 11 VIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMPQRN 70
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
V WTA I + F + F M + FSS ++AC + G+QMH
Sbjct: 71 LVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSI-EMGKQMH 129
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
+K G+ S+ +V L DMY KC + DA +VFE + K + SW AM+ GY + G +
Sbjct: 130 CLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEV-SWTAMIDGYSKIGEF 188
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIACSSISASKIN 340
EA M + I + ++ AC ++ A K
Sbjct: 189 EEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFG 226
>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Cucumis sativus]
gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Cucumis sativus]
Length = 743
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 102/362 (28%), Positives = 167/362 (46%), Gaps = 50/362 (13%)
Query: 10 TDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLF 69
T +Y LI D A + +HI + P L N LL + G L +++F
Sbjct: 40 TFLYNNLINTYGKLGDLKNARNVFDHIPQ-----PNLFSWNTLLSAYSKLGYLQDMQRVF 94
Query: 70 DEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM-LLVFPAWIIVCVLKACV 128
D MP D SW ++ GY E + ++ M+K ++ + F +I+ + V
Sbjct: 95 DSMPNHDVVSWNSLLSGYAGNGLISESVRVYNMMLKDGSVNLNRITFSTMLILSSNRGFV 154
Query: 129 CTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVV--- 185
+LG+Q+HG +FK G + + L++ Y K + DA+ +F ++ N VV
Sbjct: 155 -----DLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGFINDANRIFEEIPEKNIVVYNT 209
Query: 186 ----------------------------WTAKIVNNCREGHFHQVFNDFKEMGRERIKKN 217
WT I + G F + + FKEMG E +
Sbjct: 210 MITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQNGLFKEAVDKFKEMGIEGFCMD 269
Query: 218 SYTFSSVLKACGG---VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAE 274
+TF SVL ACGG +D+ G+Q+HA I++ + + +V L+DMY KCR ++ AE
Sbjct: 270 QFTFGSVLTACGGFLALDE----GKQIHAYIIRTDYQDNIFVGSALLDMYCKCRNVKYAE 325
Query: 275 RVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
VF + KN+ SW AMLVGY +NG EA + M+ + I + + + +C+++
Sbjct: 326 AVFRKM-RHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNEIHPDDFTLGSVISSCANL 384
Query: 335 SA 336
++
Sbjct: 385 AS 386
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/284 (27%), Positives = 131/284 (46%), Gaps = 8/284 (2%)
Query: 34 NHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADY 93
N I + + K +++ N ++ + C + A QLFD MP +D SW +I G +
Sbjct: 193 NRIFEEIPEKNIVVY-NTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQNGLF 251
Query: 94 QECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNIS 153
+E + F EM G + VL AC + ++ GKQ+H + + NI
Sbjct: 252 KEAVDKFKEM-----GIEGFCMDQFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQDNIF 306
Query: 154 LTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRER 213
+ +L++ Y K R ++ A+ VF +++ N + WTA +V + G+ + F +M R
Sbjct: 307 VGSALLDMYCKCRNVKYAEAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNE 366
Query: 214 IKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDA 273
I + +T SV+ +C + G Q H + GL V L+ +YGKC L A
Sbjct: 367 IHPDDFTLGSVISSCANLASLEE-GAQFHGQALASGLICFVTVSNALITLYGKCGSLEHA 425
Query: 274 ERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGI 317
++F + + + SW A++ GY + G E M A GI
Sbjct: 426 HQLFHEMKIRDEV-SWTALVSGYAQFGKANETISLFETMLAHGI 468
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/265 (23%), Positives = 116/265 (43%), Gaps = 11/265 (4%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R + + + + LL M+ C + A +F +M ++ SW M+VGY +E +
Sbjct: 298 RTDYQDNIFVGSALLDMYCKCRNVKYAEAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVR 357
Query: 99 LFAEMMKRKKGHMLLVFPA-WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGS 157
+F +M + + + P + + V+ +C ++E G Q HG G ++++ +
Sbjct: 358 IFCDMQRNE------IHPDDFTLGSVISSCANLASLEEGAQFHGQALASGLICFVTVSNA 411
Query: 158 LINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKN 217
LI YGK LE A +F ++K + V WTA + + G ++ + F+ M I +
Sbjct: 412 LITLYGKCGSLEHAHQLFHEMKIRDEVSWTALVSGYAQFGKANETISLFETMLAHGIVPD 471
Query: 218 SYTFSSVLKAC--GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAER 275
TF VL AC G+ + G + +I D Y C ++D+ + L +A+
Sbjct: 472 GVTFVGVLSACSRAGLVEKGYHYFECMVKEHRITPIPDHYT-C-MIDLLSRAGRLEEAKN 529
Query: 276 VFELIVDKKNIASWNAMLVGYIRNG 300
+ + W +L NG
Sbjct: 530 FINQMPFSPDAIGWATLLSSCRLNG 554
Score = 38.5 bits (88), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 214 IKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDA 273
+ +S +++ LK C + +++H I++ + ++ L++ YGK L++A
Sbjct: 1 MSSSSNYYTAALKFCCEARNRAQV-KKLHCRIIRTLTNPETFLYNNLINTYGKLGDLKNA 59
Query: 274 ERVFELIVDKKNIASWNAMLVGYIRNG 300
VF+ I + N+ SWN +L Y + G
Sbjct: 60 RNVFDHI-PQPNLFSWNTLLSAYSKLG 85
>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Vitis vinifera]
Length = 1005
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 94/307 (30%), Positives = 153/307 (49%), Gaps = 12/307 (3%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
Y+ +++ C + D + + K I P N L+ ++ CG + A ++F E+
Sbjct: 131 YSGMLRTCASKGDLNEGKAIHGQVIKS-GINPDSHLWNSLVNVYAKCGSANYACKVFGEI 189
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN 132
P RD SW +I G+V + LF EM R++G + + LKAC ++
Sbjct: 190 PERDVVSWTALITGFVAEGYGSGAVNLFCEM--RREG---VEANEFTYATALKACSMCLD 244
Query: 133 MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192
+E GKQVH K+G ++ + +L++ Y K + A+ VF + + N V W A +
Sbjct: 245 LEFGKQVHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNG 304
Query: 193 NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGN--CGRQMHANIVKIGL 250
+ G +V N F M I + +T S+VLK C + GN G+ +H+ ++IG
Sbjct: 305 FAQMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCA---NSGNLRAGQIVHSLAIRIGC 361
Query: 251 ESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLY 310
E DE++ C LVDMY KC L DA +VF I D ++ SW+A++ + G EA +
Sbjct: 362 ELDEFISCCLVDMYSKCGLAGDALKVFVRIED-PDVVSWSAIITCLDQKGQSREAAEVFK 420
Query: 311 LMKASGI 317
M+ SG+
Sbjct: 421 RMRHSGV 427
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 82/283 (28%), Positives = 140/283 (49%), Gaps = 7/283 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M++ G + ++F+ RD SW ++ G+ D + +F +M+
Sbjct: 470 NALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLAEGFN 529
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ F + +L++C +++LGKQVH + K N + +L++ Y K R LE
Sbjct: 530 PNMYTF-----ISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLE 584
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
DA+ +F++L + + WT + ++G + F +M RE +K N +T +S L C
Sbjct: 585 DAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCS 644
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ + GRQ+H+ +K G D +V LVDMY KC + DAE VF+ +V + + SW
Sbjct: 645 RIATL-DSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTV-SW 702
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
N ++ GY ++G +A K M G E + ACS
Sbjct: 703 NTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACS 745
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/211 (33%), Positives = 110/211 (52%), Gaps = 2/211 (0%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
+L+ C ++ GK +HG + K G + + L SL+N Y K A VF ++ +
Sbjct: 134 MLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERD 193
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
V WTA I EG+ N F EM RE ++ N +T+++ LKAC + D G+Q+H
Sbjct: 194 VVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKAC-SMCLDLEFGKQVH 252
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
A +K+G SD +V LVD+Y KC + AERVF L + K+N SWNA+L G+ + G
Sbjct: 253 AEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVF-LCMPKQNAVSWNALLNGFAQMGDA 311
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIACSS 333
+ M S I + ++ + C++
Sbjct: 312 EKVLNLFCRMTGSEINFSKFTLSTVLKGCAN 342
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/291 (28%), Positives = 142/291 (48%), Gaps = 10/291 (3%)
Query: 47 LFLNRLLL-MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
LF+ L+ ++ CG++ A ++F MP ++ SW ++ G+ + D ++ + LF M
Sbjct: 264 LFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQMGDAEKVLNLFCRMTG 323
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
+ + F + + VLK C + N+ G+ VH L ++G + ++ L++ Y K
Sbjct: 324 SE-----INFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCELDEFISCCLVDMYSKC 378
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
DA VF +++ + V W+A I ++G + FK M + N +T +S++
Sbjct: 379 GLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLV 438
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
A + D G +HA + K G E D V LV MY K ++D RVFE + ++
Sbjct: 439 SAATDLGDL-YYGESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFEATTN-RD 496
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQ-ESLINDLRIACSSIS 335
+ SWNA+L G+ N + M A G + I+ LR +CSS+S
Sbjct: 497 LISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILR-SCSSLS 546
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 74/284 (26%), Positives = 134/284 (47%), Gaps = 7/284 (2%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ CG A ++F + D SW+ +I +E AE+ KR + H
Sbjct: 371 LVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQSREA----AEVFKRMR-HS 425
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
++ + + ++ A ++ G+ +H + K G + ++ +L+ Y K ++D
Sbjct: 426 GVIPNQFTLASLVSAATDLGDLYYGESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDG 485
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
VF + + W A + F +M E N YTF S+L++C +
Sbjct: 486 CRVFEATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSL 545
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
D + G+Q+HA IVK L+ +++V LVDMY K R L DAE +F ++ K+++ +W
Sbjct: 546 SDV-DLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLI-KRDLFAWTV 603
Query: 292 MLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
++ GY ++G +A K M+ G++ E + CS I+
Sbjct: 604 IVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIA 647
>gi|359482004|ref|XP_002276764.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g01510-like [Vitis vinifera]
Length = 681
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 90/295 (30%), Positives = 142/295 (48%), Gaps = 10/295 (3%)
Query: 44 PTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEM 103
P N L+ M+ CG+LD A +LFD MP R+ SW MI G + + E I F M
Sbjct: 38 PCTFLTNHLVNMYSKCGELDHALKLFDTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGM 97
Query: 104 MKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYG 163
R G + F ++AC ++E+GKQ+H L K G + + +L + Y
Sbjct: 98 --RICGEVPTQFA---FSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYS 152
Query: 164 KFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSS 223
K + DA VF ++ + V WTA I + G F + FK+M E + + + S
Sbjct: 153 KCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCS 212
Query: 224 VLKACGGVDDDGNC--GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIV 281
L ACG + C GR +H+++VK+G ESD +V L DMY K + A VF +
Sbjct: 213 TLGACGALK---ACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDS 269
Query: 282 DKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+ +N+ S+ ++ GY+ + ++ GI+ E + L AC++ +A
Sbjct: 270 ECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAA 324
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 96/334 (28%), Positives = 159/334 (47%), Gaps = 16/334 (4%)
Query: 4 LCLPITTDM-YTCLIKECTFQKDSAGAFEL---LNHIRKRVNIKPTLLFLNRLLLMHVSC 59
+C + T ++ I+ C S G+ E+ ++ + + I L + L M+ C
Sbjct: 99 ICGEVPTQFAFSSAIRACA----SLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKC 154
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI 119
G + A ++F+EMP +D SW MI GY + +++E + F +M+ + + +
Sbjct: 155 GAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEE-----VTIDQHV 209
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFS-QL 178
+ L AC + G+ VH + KLG +I + +L + Y K +E A VF
Sbjct: 210 LCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDS 269
Query: 179 KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCG 238
+ N V +T I + + F E+ R+ I+ N +TFSS++KAC G
Sbjct: 270 ECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACAN-QAALEQG 328
Query: 239 RQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIR 298
Q+HA ++KI + D +V LVDMYGKC LL A + F+ I D IA WN+++ + +
Sbjct: 329 TQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDEIGDPTEIA-WNSLVSVFGQ 387
Query: 299 NGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+GL +A K M G++ L CS
Sbjct: 388 HGLGKDAIKIFERMVDRGVKPNAITFISLLTGCS 421
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/218 (30%), Positives = 101/218 (46%), Gaps = 2/218 (0%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
V++ T + GKQ+H LL G + LT L+N Y K L+ A +F + + N
Sbjct: 11 VIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMPQRN 70
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
V WTA I + F + F M + FSS ++AC + G+QMH
Sbjct: 71 LVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSI-EMGKQMH 129
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
+K G+ S+ +V L DMY KC + DA +VFE + K + SW AM+ GY + G +
Sbjct: 130 CLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEV-SWTAMIDGYSKIGEF 188
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIACSSISASKIN 340
EA M + I + ++ AC ++ A K
Sbjct: 189 EEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFG 226
>gi|125525985|gb|EAY74099.1| hypothetical protein OsI_01984 [Oryza sativa Indica Group]
Length = 735
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 88/285 (30%), Positives = 137/285 (48%), Gaps = 6/285 (2%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL M+ G + AR++FD MP R+ SW+ M+ GY +E LF M++
Sbjct: 159 LLNMYCKLGIVSDARRMFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFRLMLEECPSEK 218
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
++ VL A + + +G+Q+HGL+ K G +S+ SL+ Y K C+ A
Sbjct: 219 ----SEFVATAVLSAVSVPLGLLMGEQMHGLIVKDGLLDFVSVENSLVTMYAKAGCMGAA 274
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
VF + N++ W+A I + G + F +M +TF VL A +
Sbjct: 275 FHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNASSDL 334
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
G+Q H +VK+G E YV+ LVDMY KC + DA+ F+ + + +I W A
Sbjct: 335 GALA-VGKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIADAKEGFDQLYE-VDIVLWTA 392
Query: 292 MLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
M+ G+++NG + EA M GI +S I AC+ I+A
Sbjct: 393 MVSGHVQNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAA 437
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 96/338 (28%), Positives = 152/338 (44%), Gaps = 24/338 (7%)
Query: 11 DMYTCLIKECTFQKDSAGAFELLNHIRKRVN-----------IKPTLLFL----NRLLLM 55
D++ +++EC +K A +L+ + + +K LL N L+ M
Sbjct: 205 DLFRLMLEECPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKDGLLDFVSVENSLVTM 264
Query: 56 HVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVF 115
+ G + A +F+ R+ +W+ MI GY + +++F++M H
Sbjct: 265 YAKAGCMGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQM------HAAGFT 318
Query: 116 PA-WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFV 174
P + V VL A + +GKQ HGL+ KLG I + +L++ Y K C+ DA
Sbjct: 319 PTEFTFVGVLNASSDLGALAVGKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIADAKEG 378
Query: 175 FSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDD 234
F QL + V+WTA + + + G + + M +E I + T +S L+AC G+
Sbjct: 379 FDQLYEVDIVLWTAMVSGHVQNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAAL 438
Query: 235 GNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLV 294
G+Q+H IVK GL V L MY KC L D VF I D+ IA WN+++
Sbjct: 439 -EPGKQLHTQIVKYGLGLGAPVGSALSTMYSKCGNLEDGMSVFRRIPDRDVIA-WNSIIS 496
Query: 295 GYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
G+ +NG A MK G ++ ACS
Sbjct: 497 GFSQNGCGNGALDLFEEMKMEGTIPDNITFINILCACS 534
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 87/184 (47%), Gaps = 4/184 (2%)
Query: 140 HGLLFKLGSS-RNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGH 198
H L K+ S+ N+ + SL+N Y K + DA +F + + N+ W+ + E
Sbjct: 140 HALACKIPSAVSNVYVCTSLLNMYCKLGIVSDARRMFDGMPQRNSFSWSTMVAGYAAEKC 199
Query: 199 FHQVFNDFKEMGRE-RIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQ 257
+ F+ F+ M E +K+ + ++VL A V G QMH IVK GL V+
Sbjct: 200 SEEAFDLFRLMLEECPSEKSEFVATAVLSAV-SVPLGLLMGEQMHGLIVKDGLLDFVSVE 258
Query: 258 CGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGI 317
LV MY K + A VFE ++ +I +W+AM+ GY +NG A M A+G
Sbjct: 259 NSLVTMYAKAGCMGAAFHVFESSRERNSI-TWSAMITGYAQNGEADSAVSMFSQMHAAGF 317
Query: 318 QIQE 321
E
Sbjct: 318 TPTE 321
Score = 42.0 bits (97), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 79/183 (43%), Gaps = 9/183 (4%)
Query: 136 GKQVHGLLFKLGSSRNISLTGSLINFYGKF-RCLEDADF-VFSQLKR--HNTVVWTAKIV 191
G+ +H K G++ + + SLINFY R L A F VF + + W + ++
Sbjct: 31 GEALHAWALKSGAASHAPVANSLINFYSSLPRPLLAAAFAVFDDIPPAARDVASWNS-LL 89
Query: 192 NNCREGHFHQVFNDFKEM-GRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGL 250
N + F+ M + + ++F++ A G HA KI
Sbjct: 90 NPLSRHRPLDALSRFRSMLSSSTVLPSPHSFAAAFTAA-ARAASAPAGTAAHALACKIPS 148
Query: 251 E-SDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFL 309
S+ YV L++MY K ++ DA R+F+ + ++N SW+ M+ GY EA
Sbjct: 149 AVSNVYVCTSLLNMYCKLGIVSDARRMFDGM-PQRNSFSWSTMVAGYAAEKCSEEAFDLF 207
Query: 310 YLM 312
LM
Sbjct: 208 RLM 210
>gi|195615078|gb|ACG29369.1| pentatricopeptide repeat protein PPR1106-17 [Zea mays]
gi|414868049|tpg|DAA46606.1| TPA: pentatricopeptide repeat protein PPR1106-17 [Zea mays]
Length = 618
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 82/280 (29%), Positives = 145/280 (51%), Gaps = 7/280 (2%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ CG++ A+ +FD+MP R+ +W MI GY +E + LF +M R+
Sbjct: 331 LVTMYARCGEVFDAQTVFDKMPRRNTITWTSMISGYAQSGCGEEAVLLFRKMKMRR---- 386
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+ IV +L AC ++ GK++H + K N+ + +L+ FY + A
Sbjct: 387 -VFVNHLTIVSLLSACGSMQSIYHGKELHAQIIKNCMEENLQIGSTLVWFYNRRGEHTYA 445
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
+ + + V WTA I GH + EM + + N+YT+SS LKAC +
Sbjct: 446 TRILEAMPDRDAVAWTAMISGYNNLGHNVEALKSLDEMLWDGVVPNTYTYSSALKACARL 505
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
+ + GR++H + K S+ +V C L+DMY +C + +A RVF+ + + N+ +W
Sbjct: 506 EALQD-GRRIHGVVNKTQAFSNVFVGCSLIDMYMRCGKVDEARRVFDAM-PEHNLVTWKV 563
Query: 292 MLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
M+ G+ +NG EA K+++LM+ G + E +++ + +C
Sbjct: 564 MITGFTQNGRSEEALKYMFLMQQEGYVVDEFVLSTVLSSC 603
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 87/287 (30%), Positives = 139/287 (48%), Gaps = 8/287 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ +V ++ AR++FDEMP R SW M+ GY + + E L +M+
Sbjct: 128 NNLISAYVRFDEVANARKVFDEMPERSIVSWTAMMNGYQKLGCHGEVARLLMDMLIAGVQ 187
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
L F VC+LK+C + LG+QVH + K G S N+ + ++ +FY + +
Sbjct: 188 GNSLTF-----VCLLKSCGERCDARLGQQVHCCVVKGGWS-NVIVDSAITHFYAQCGDVA 241
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A VF ++ + + WT I + GH + F M E + N +T S LKAC
Sbjct: 242 AASTVFDRMASRDVISWTTMITAYVQHGHSDKALQMFPTMVSEGFRPNEFTVCSALKACA 301
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ G+Q+H IVK + D +V LV MY +C + DA+ VF+ + ++N +W
Sbjct: 302 E-EKALRFGKQLHGAIVKKLYKYDIHVGSALVTMYARCGEVFDAQTVFDKM-PRRNTITW 359
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+M+ GY ++G EA MK + + I L AC S+ +
Sbjct: 360 TSMISGYAQSGCGEEAVLLFRKMKMRRVFVNHLTIVSLLSACGSMQS 406
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 83/282 (29%), Positives = 128/282 (45%), Gaps = 9/282 (3%)
Query: 56 HVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVF 115
+ CG + A +FD M RD SW MI YV + + +F M+
Sbjct: 234 YAQCGDVAAASTVFDRMASRDVISWTTMITAYVQHGHSDKALQMFPTMVSEG------FR 287
Query: 116 PAWIIVC-VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFV 174
P VC LKAC + GKQ+HG + K +I + +L+ Y + + DA V
Sbjct: 288 PNEFTVCSALKACAEEKALRFGKQLHGAIVKKLYKYDIHVGSALVTMYARCGEVFDAQTV 347
Query: 175 FSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDD 234
F ++ R NT+ WT+ I + G + F++M R+ N T S+L ACG +
Sbjct: 348 FDKMPRRNTITWTSMISGYAQSGCGEEAVLLFRKMKMRRVFVNHLTIVSLLSACGSMQSI 407
Query: 235 GNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLV 294
+ G+++HA I+K +E + + LV Y + A R+ E + D+ +A W AM+
Sbjct: 408 YH-GKELHAQIIKNCMEENLQIGSTLVWFYNRRGEHTYATRILEAMPDRDAVA-WTAMIS 465
Query: 295 GYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
GY G VEA K L M G+ + AC+ + A
Sbjct: 466 GYNNLGHNVEALKSLDEMLWDGVVPNTYTYSSALKACARLEA 507
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 98/225 (43%), Gaps = 13/225 (5%)
Query: 6 LPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLL-FLNRLLLMHVSCGQLDT 64
L I + + C + + A + N + + + I TL+ F NR G+
Sbjct: 392 LTIVSLLSACGSMQSIYHGKELHAQIIKNCMEENLQIGSTLVWFYNRR-------GEHTY 444
Query: 65 ARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVL 124
A ++ + MP RD +W MI GY ++ E + EM+ +V + L
Sbjct: 445 ATRILEAMPDRDAVAWTAMISGYNNLGHNVEALKSLDEMLWDG-----VVPNTYTYSSAL 499
Query: 125 KACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTV 184
KAC ++ G+++HG++ K + N+ + SLI+ Y + +++A VF + HN V
Sbjct: 500 KACARLEALQDGRRIHGVVNKTQAFSNVFVGCSLIDMYMRCGKVDEARRVFDAMPEHNLV 559
Query: 185 VWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
W I + G + M +E + + S+VL +CG
Sbjct: 560 TWKVMITGFTQNGRSEEALKYMFLMQQEGYVVDEFVLSTVLSSCG 604
>gi|147766033|emb|CAN70212.1| hypothetical protein VITISV_038740 [Vitis vinifera]
Length = 724
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 89/322 (27%), Positives = 158/322 (49%), Gaps = 7/322 (2%)
Query: 11 DMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFD 70
++Y+ L+KECT + H+ + L+ N ++ M+ CG LD AR++FD
Sbjct: 88 NLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARRMFD 147
Query: 71 EMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCT 130
EMP +D +W +I G+ ++ + LF +M++ + L + + +LKA
Sbjct: 148 EMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLR-----LGLQPNHFTLSSLLKASGSE 202
Query: 131 MNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKI 190
++ G Q+H K G ++ + +L++ Y + ++ A F + + V W A I
Sbjct: 203 HGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALI 262
Query: 191 VNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGL 250
+ R+G + +M R+ + +T+SSV AC + G+ +HA+++K GL
Sbjct: 263 SGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVFSACASIGALEQ-GKWVHAHMIKSGL 321
Query: 251 ESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLY 310
+ ++ L+DMY K + DA+RVF+ +V K ++ SWN ML G ++GL E
Sbjct: 322 KLIAFIGNTLLDMYAKAGSIDDAKRVFDRLV-KPDVVSWNTMLTGCAQHGLGKETLDRFE 380
Query: 311 LMKASGIQIQESLINDLRIACS 332
M GI+ E + ACS
Sbjct: 381 QMLRIGIEPNEISFLCVLTACS 402
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 105/218 (48%), Gaps = 9/218 (4%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRN-ISLTGSLINFYGKFRCLEDADFVFSQLKRH 181
+LK C +E G+ VH L N + L ++N Y K CL+DA +F ++
Sbjct: 93 LLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARRMFDEMPTK 152
Query: 182 NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG---GVDDDGNCG 238
+ V WTA I + F +M R ++ N +T SS+LKA G G+D G
Sbjct: 153 DMVTWTALIAGFSQNNRPRDALLLFPQMLRLGLQPNHFTLSSLLKASGSEHGLDP----G 208
Query: 239 RQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIR 298
Q+HA +K G +S YV LVDMY +C + A+ F+ + K + SWNA++ G+ R
Sbjct: 209 TQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEV-SWNALISGHAR 267
Query: 299 NGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
G A L+ M+ Q + + AC+SI A
Sbjct: 268 KGEGEHALHLLWKMQRKNFQPTHFTYSSVFSACASIGA 305
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 110/244 (45%), Gaps = 10/244 (4%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ CG +D A+ FD MP + SW +I G+ + + + L +M ++
Sbjct: 230 LVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPT 289
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+ + V AC +E GK VH + K G + +L++ Y K ++DA
Sbjct: 290 HFTYSS-----VFSACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDA 344
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--G 229
VF +L + + V W + + G + + F++M R I+ N +F VL AC
Sbjct: 345 KRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVLTACSHS 404
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
G+ D+G ++ + K +E D VD+ G+ LL AER + + A W
Sbjct: 405 GLLDEGLYYFEL---MKKYKVEPDVPHYVTFVDLLGRVGLLDRAERFIREMPIEPTAAVW 461
Query: 290 NAML 293
A+L
Sbjct: 462 GALL 465
Score = 44.7 bits (104), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 67/148 (45%), Gaps = 9/148 (6%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N LL M+ G +D A+++FD + D SW M+ G +E + F +M++
Sbjct: 329 NTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLR---- 384
Query: 110 HMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+ + P I +CVL AC + ++ G L+ K ++ + ++ G+ L
Sbjct: 385 --IGIEPNEISFLCVLTACSHSGLLDEGLYYFELMKKYKVEPDVPHYVTFVDLLGRVGLL 442
Query: 169 EDADFVFSQLKRHNT-VVWTAKIVNNCR 195
+ A+ ++ T VW A ++ CR
Sbjct: 443 DRAERFIREMPIEPTAAVWGA-LLGACR 469
>gi|90657601|gb|ABD96900.1| hypothetical protein [Cleome spinosa]
Length = 924
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 100/362 (27%), Positives = 164/362 (45%), Gaps = 34/362 (9%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCG 60
M + + ++ +Y ++K C D +L H K +K ++ L M+ C
Sbjct: 273 MQKVGVGVSQSIYASVLKSCATLPDLRLGTQLHAHALKSDFVKDGIV-RTATLDMYAKCN 331
Query: 61 QLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWII 120
+ A++LFD + S+ MI GY + + LF ++ K G F +
Sbjct: 332 NMQDAQRLFDMSENLNLQSYNAMITGYSQKDNGFRALLLFRKLSKSSLG-----FDEISL 386
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
L+AC + G Q+HGL K SRNI + + I+ YGK L++A VF ++ R
Sbjct: 387 SGALRACATVKGLSEGLQLHGLATKSNFSRNICVANAFIDMYGKCEALDEACRVFDEMGR 446
Query: 181 HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQ 240
+ V W A I + + + N M R ++ + YTF SVLKAC G D N G +
Sbjct: 447 KDAVSWNAIIAAHEQNEERSKTLNILVSMLRSGMEPDEYTFGSVLKACAG--DSLNHGME 504
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVF-----------------ELIVDK 283
+H IVK+G+ S+ Y+ LVDMY KC ++ +AE++ E I +
Sbjct: 505 IHTTIVKLGMASNPYIGSSLVDMYSKCGMIDEAEKIHNKIFIGIGDSNTYSEHPETIEEP 564
Query: 284 KN---------IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
K I SWNA++ GY+ +A +F M GI + + + C+++
Sbjct: 565 KGIQDRRVQEMIVSWNAIISGYVMRKQSEDAQRFFNRMMEMGITPDKFTYSTVLDTCANL 624
Query: 335 SA 336
++
Sbjct: 625 AS 626
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 101/357 (28%), Positives = 165/357 (46%), Gaps = 47/357 (13%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNI---KPTLLFLNRLLLMHVSCGQLDTARQLF 69
++ + KEC Q+ A EL + I +PT+ N LL ++++CG L A +LF
Sbjct: 52 FSFVFKECAKQR----AHELGKQAHAHMIISGFRPTVFVSNCLLQLYINCGNLGYATKLF 107
Query: 70 DEMPLRDFNSWAVMIVGYV------------------DVADYQ-------------ECIT 98
D MPLRD SW MI GY DV + E +
Sbjct: 108 DGMPLRDVVSWNAMIFGYAASNDMVRASLCFEMMPTRDVVSWNSMLSGFLQTGENLESVK 167
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
+F EM G + F +LK C N +LG Q+HG+ ++G ++ +L
Sbjct: 168 VFIEM-----GRSGVEFDNKSFSVILKVCSILENYKLGTQIHGIALRMGYDTDVVSGSAL 222
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
++ Y K + L+++ VF + + N + W+A I + FKEM + + +
Sbjct: 223 LDMYAKCKRLDESFTVFYAMPQKNWISWSAIIAGCVQNNFLDGGLKMFKEMQKVGVGVSQ 282
Query: 219 YTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE 278
++SVLK+C + D G Q+HA+ +K D V+ +DMY KC ++DA+R+F+
Sbjct: 283 SIYASVLKSCATL-PDLRLGTQLHAHALKSDFVKDGIVRTATLDMYAKCNNMQDAQRLFD 341
Query: 279 LIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQE-SLINDLRIACSSI 334
+ + N+ S+NAM+ GY + A + S + E SL LR AC+++
Sbjct: 342 M-SENLNLQSYNAMITGYSQKDNGFRALLLFRKLSKSSLGFDEISLSGALR-ACATV 396
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 87/332 (26%), Positives = 146/332 (43%), Gaps = 41/332 (12%)
Query: 33 LNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVAD 92
L+ + + N + N + M+ C LD A ++FDEM +D SW +I + +
Sbjct: 405 LHGLATKSNFSRNICVANAFIDMYGKCEALDEACRVFDEMGRKDAVSWNAIIAAHEQNEE 464
Query: 93 YQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNI 152
+ + + M++ + + VLKAC ++ G ++H + KLG + N
Sbjct: 465 RSKTLNILVSMLRSG-----MEPDEYTFGSVLKACAGD-SLNHGMEIHTTIVKLGMASNP 518
Query: 153 SLTGSLINFYGKFRCLEDADFV----FSQLKRHNT-----------------------VV 185
+ SL++ Y K +++A+ + F + NT V
Sbjct: 519 YIGSSLVDMYSKCGMIDEAEKIHNKIFIGIGDSNTYSEHPETIEEPKGIQDRRVQEMIVS 578
Query: 186 WTAKI---VNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
W A I V + + FN EMG I + +T+S+VL C + G G+Q+H
Sbjct: 579 WNAIISGYVMRKQSEDAQRFFNRMMEMG---ITPDKFTYSTVLDTCANLASIG-LGKQIH 634
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
A+++K L+ D Y+ LVDMY KC L D+ +FE ++ +WNAM+ GY +G+
Sbjct: 635 AHVIKKELQYDVYICSTLVDMYSKCGNLHDSRLMFEK-APIRDFVTWNAMICGYAHHGMG 693
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIACSSI 334
EA K M I + L AC+ +
Sbjct: 694 EEAIKLFESMVLMNIMPNHATFVSLLRACAHM 725
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 82/202 (40%), Gaps = 8/202 (3%)
Query: 79 SWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQ 138
SW +I GYV ++ F MM+ M + + VL C ++ LGKQ
Sbjct: 578 SWNAIISGYVMRKQSEDAQRFFNRMME-----MGITPDKFTYSTVLDTCANLASIGLGKQ 632
Query: 139 VHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGH 198
+H + K ++ + +L++ Y K L D+ +F + + V W A I G
Sbjct: 633 IHAHVIKKELQYDVYICSTLVDMYSKCGNLHDSRLMFEKAPIRDFVTWNAMICGYAHHGM 692
Query: 199 FHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQC 258
+ F+ M I N TF S+L+AC + H + GL+
Sbjct: 693 GEEAIKLFESMVLMNIMPNHATFVSLLRACAHMGLVERGLDYFHMMKKEYGLDPRLEHYS 752
Query: 259 GLVDMYGKCRLLRDAERVFELI 280
+VD+ GK + E+ ELI
Sbjct: 753 NMVDILGKS---GEVEKALELI 771
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 84/186 (45%), Gaps = 12/186 (6%)
Query: 6 LPITTD--MYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLD 63
+ IT D Y+ ++ C ++ H+ K+ ++ + + L+ M+ CG L
Sbjct: 605 MGITPDKFTYSTVLDTCANLASIGLGKQIHAHVIKK-ELQYDVYICSTLVDMYSKCGNLH 663
Query: 64 TARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIVC 122
+R +F++ P+RDF +W MI GY +E I LF M+ ++ + P V
Sbjct: 664 DSRLMFEKAPIRDFVTWNAMICGYAHHGMGEEAIKLFESMV------LMNIMPNHATFVS 717
Query: 123 VLKACVCTMNMELG-KQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK-R 180
+L+AC +E G H + + G + ++++ GK +E A + ++
Sbjct: 718 LLRACAHMGLVERGLDYFHMMKKEYGLDPRLEHYSNMVDILGKSGEVEKALELIQEMPFE 777
Query: 181 HNTVVW 186
+ V+W
Sbjct: 778 ADDVIW 783
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 33/159 (20%), Positives = 62/159 (38%), Gaps = 31/159 (19%)
Query: 211 RERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLL 270
E+ + FS V K C G+Q HA+++ G +V L+ +Y C L
Sbjct: 42 HEKPATSVANFSFVFKECAK-QRAHELGKQAHAHMIISGFRPTVFVSNCLLQLYINCGNL 100
Query: 271 RDAERVFE------------------------------LIVDKKNIASWNAMLVGYIRNG 300
A ++F+ ++ +++ SWN+ML G+++ G
Sbjct: 101 GYATKLFDGMPLRDVVSWNAMIFGYAASNDMVRASLCFEMMPTRDVVSWNSMLSGFLQTG 160
Query: 301 LYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKI 339
+E+ K M SG++ + + CS + K+
Sbjct: 161 ENLESVKVFIEMGRSGVEFDNKSFSVILKVCSILENYKL 199
>gi|326512500|dbj|BAJ99605.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 621
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 92/330 (27%), Positives = 159/330 (48%), Gaps = 14/330 (4%)
Query: 7 PITTDMYT--CLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDT 64
PI+ D T ++ C D G ++ + R P + N L+ + ++
Sbjct: 84 PISPDAETLASWLRSCGAVADVRG----VHGVAVRSPDGPGIFLANNLITSYARFHEIPD 139
Query: 65 ARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVL 124
AR++FDEMP R SW M+ GY ++ E + LF +M+ + L F VC+L
Sbjct: 140 ARKVFDEMPERTVVSWTAMMNGYQKSGNHGEVVRLFLDMIASGERGNSLSF-----VCLL 194
Query: 125 KACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTV 184
K+C + +LG+QVH + K G S N+ + ++ +FY + ++ A +F ++ + +
Sbjct: 195 KSCGEQCDGKLGQQVHCCVVKGGWS-NVIMDSAVAHFYAQCGDVDGASMMFDKMTSRDVI 253
Query: 185 VWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHAN 244
WT I + G + F M E N +T S+LKAC + CG+Q+H
Sbjct: 254 SWTTMITAYVQHGRGDKALQMFPAMISEGFHPNEFTVCSILKAC-AEEKALRCGKQLHGA 312
Query: 245 IVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVE 304
+VK ++D +V LV MY + R + DA+ VF+ ++ ++N +W +++ GY ++G
Sbjct: 313 LVKKLFKNDIHVGSALVTMYARNREVSDAQAVFD-VMPRRNTITWTSLISGYAQSGHAER 371
Query: 305 ATKFLYLMKASGIQIQESLINDLRIACSSI 334
A MK + + I L AC S+
Sbjct: 372 AIMLFRQMKTRRVSVNNLTIVGLLSACGSL 401
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 94/326 (28%), Positives = 146/326 (44%), Gaps = 13/326 (3%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
+ CL+K C Q D G H ++ + + + CG +D A +FD+M
Sbjct: 190 FVCLLKSCGEQCD--GKLGQQVHCCVVKGGWSNVIMDSAVAHFYAQCGDVDGASMMFDKM 247
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVC-VLKACVCTM 131
RD SW MI YV + + +F M+ P VC +LKAC
Sbjct: 248 TSRDVISWTTMITAYVQHGRGDKALQMFPAMISEG------FHPNEFTVCSILKACAEEK 301
Query: 132 NMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIV 191
+ GKQ+HG L K +I + +L+ Y + R + DA VF + R NT+ WT+ I
Sbjct: 302 ALRCGKQLHGALVKKLFKNDIHVGSALVTMYARNREVSDAQAVFDVMPRRNTITWTSLIS 361
Query: 192 NNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC-GRQMHANIVKIGL 250
+ GH + F++M R+ N+ T +L ACG + C G+++HA ++K +
Sbjct: 362 GYAQSGHAERAIMLFRQMKTRRVSVNNLTIVGLLSACGSLRS--LCLGKELHAQVIKNSI 419
Query: 251 ESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLY 310
+ + + LV Y KC A R+ E + D+ +A W AM+ GY G EA K L
Sbjct: 420 QENLQIGSTLVWCYCKCGEYTYAARILEEMPDRDAVA-WTAMISGYNSVGHSAEALKSLD 478
Query: 311 LMKASGIQIQESLINDLRIACSSISA 336
M G+ + AC+ + A
Sbjct: 479 DMLWDGVTPNTYTYSSALKACAKLEA 504
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 79/283 (27%), Positives = 141/283 (49%), Gaps = 7/283 (2%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ ++ A+ +FD MP R+ +W +I GY + I LF +M R+
Sbjct: 328 LVTMYARNREVSDAQAVFDVMPRRNTITWTSLISGYAQSGHAERAIMLFRQMKTRRVSVN 387
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
L IV +L AC ++ LGK++H + K N+ + +L+ Y K A
Sbjct: 388 NLT-----IVGLLSACGSLRSLCLGKELHAQVIKNSIQENLQIGSTLVWCYCKCGEYTYA 442
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
+ ++ + V WTA I GH + +M + + N+YT+SS LKAC +
Sbjct: 443 ARILEEMPDRDAVAWTAMISGYNSVGHSAEALKSLDDMLWDGVTPNTYTYSSALKACAKL 502
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
+ + GR++H + K S+ +V L+DMY +C + +A RVF + + N+ +W
Sbjct: 503 EALQD-GRRIHGVVNKTPAFSNVFVGSSLIDMYMRCGKVDEARRVFSALPEH-NLVTWKV 560
Query: 292 MLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
++ G+ +NGL EA K++YLM+ G + +++ + +C +
Sbjct: 561 IITGFAQNGLCEEAFKYMYLMQQQGYDADDFMLSKVLTSCGDL 603
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 91/197 (46%), Gaps = 13/197 (6%)
Query: 34 NHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADY 93
N I++ + I TL++ + CG+ A ++ +EMP RD +W MI GY V
Sbjct: 417 NSIQENLQIGSTLVWC------YCKCGEYTYAARILEEMPDRDAVAWTAMISGYNSVGHS 470
Query: 94 QECITLFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNI 152
E + +M+ V P + LKAC ++ G+++HG++ K + N+
Sbjct: 471 AEALKSLDDMLWDG------VTPNTYTYSSALKACAKLEALQDGRRIHGVVNKTPAFSNV 524
Query: 153 SLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRE 212
+ SLI+ Y + +++A VFS L HN V W I + G + F M ++
Sbjct: 525 FVGSSLIDMYMRCGKVDEARRVFSALPEHNLVTWKVIITGFAQNGLCEEAFKYMYLMQQQ 584
Query: 213 RIKKNSYTFSSVLKACG 229
+ + S VL +CG
Sbjct: 585 GYDADDFMLSKVLTSCG 601
>gi|359496846|ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
Length = 1286
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 88/313 (28%), Positives = 154/313 (49%), Gaps = 11/313 (3%)
Query: 11 DMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFD 70
++Y+ L+KECT + H+ + L+ N ++ M+ CG LD AR++FD
Sbjct: 88 NLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARRMFD 147
Query: 71 EMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR--KKGHMLLVFPAWIIVCVLKACV 128
EMP +D +W +I G+ ++ + LF +M++ + H L +LKA
Sbjct: 148 EMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHFTLS-------SLLKASG 200
Query: 129 CTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTA 188
++ G Q+H K G ++ + +L++ Y + ++ A F + + V W A
Sbjct: 201 SEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNA 260
Query: 189 KIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKI 248
I + R+G + +M R+ + +T+SSVL AC + G+ +HA+++K
Sbjct: 261 LISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVLSACASI-GALEQGKWVHAHMIKS 319
Query: 249 GLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKF 308
GL+ ++ L+DMY K + DA+RVF+ +V K ++ SWN ML G ++GL E
Sbjct: 320 GLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLV-KPDVVSWNTMLTGCAQHGLGKETLDR 378
Query: 309 LYLMKASGIQIQE 321
M GI+ E
Sbjct: 379 FEQMLRIGIEPNE 391
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 104/218 (47%), Gaps = 9/218 (4%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRN-ISLTGSLINFYGKFRCLEDADFVFSQLKRH 181
+LK C +E G+ VH L N + L ++N Y K CL+DA +F ++
Sbjct: 93 LLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARRMFDEMPTK 152
Query: 182 NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG---GVDDDGNCG 238
+ V WTA I + F +M R + N +T SS+LKA G G+D G
Sbjct: 153 DMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHFTLSSLLKASGSEHGLD----PG 208
Query: 239 RQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIR 298
Q+HA +K G +S YV LVDMY +C + A+ F+ + K + SWNA++ G+ R
Sbjct: 209 TQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEV-SWNALISGHAR 267
Query: 299 NGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
G A L+ M+ Q + + AC+SI A
Sbjct: 268 KGEGEHALHLLWKMQRKNFQPTHFTYSSVLSACASIGA 305
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 111/244 (45%), Gaps = 10/244 (4%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ CG +D A+ FD MP + SW +I G+ + + + L +M ++
Sbjct: 230 LVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPT 289
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+ + VL AC +E GK VH + K G + +L++ Y K ++DA
Sbjct: 290 HFTYSS-----VLSACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDA 344
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--G 229
VF +L + + V W + + G + + F++M R I+ N +F VL AC
Sbjct: 345 KRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVLTACSHS 404
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
G+ D+G ++ + K +E D VD+ G+ LL AER + + A W
Sbjct: 405 GLLDEGLYYFEL---MKKYKVEPDVPHYVTFVDLLGRVGLLDRAERFIREMPIEPTAAVW 461
Query: 290 NAML 293
A+L
Sbjct: 462 GALL 465
Score = 44.7 bits (104), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 67/148 (45%), Gaps = 9/148 (6%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N LL M+ G +D A+++FD + D SW M+ G +E + F +M++
Sbjct: 329 NTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLR---- 384
Query: 110 HMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+ + P I +CVL AC + ++ G L+ K ++ + ++ G+ L
Sbjct: 385 --IGIEPNEISFLCVLTACSHSGLLDEGLYYFELMKKYKVEPDVPHYVTFVDLLGRVGLL 442
Query: 169 EDADFVFSQLKRHNT-VVWTAKIVNNCR 195
+ A+ ++ T VW A ++ CR
Sbjct: 443 DRAERFIREMPIEPTAAVWGA-LLGACR 469
>gi|414868050|tpg|DAA46607.1| TPA: hypothetical protein ZEAMMB73_506268 [Zea mays]
Length = 369
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 82/280 (29%), Positives = 145/280 (51%), Gaps = 7/280 (2%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ CG++ A+ +FD+MP R+ +W MI GY +E + LF +M R+
Sbjct: 82 LVTMYARCGEVFDAQTVFDKMPRRNTITWTSMISGYAQSGCGEEAVLLFRKMKMRR---- 137
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+ IV +L AC ++ GK++H + K N+ + +L+ FY + A
Sbjct: 138 -VFVNHLTIVSLLSACGSMQSIYHGKELHAQIIKNCMEENLQIGSTLVWFYNRRGEHTYA 196
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
+ + + V WTA I GH + EM + + N+YT+SS LKAC +
Sbjct: 197 TRILEAMPDRDAVAWTAMISGYNNLGHNVEALKSLDEMLWDGVVPNTYTYSSALKACARL 256
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
+ + GR++H + K S+ +V C L+DMY +C + +A RVF+ + + N+ +W
Sbjct: 257 EALQD-GRRIHGVVNKTQAFSNVFVGCSLIDMYMRCGKVDEARRVFDAM-PEHNLVTWKV 314
Query: 292 MLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
M+ G+ +NG EA K+++LM+ G + E +++ + +C
Sbjct: 315 MITGFTQNGRSEEALKYMFLMQQEGYVVDEFVLSTVLSSC 354
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 78/266 (29%), Positives = 120/266 (45%), Gaps = 9/266 (3%)
Query: 72 MPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVC-VLKACVCT 130
M RD SW MI YV + + +F M+ P VC LKAC
Sbjct: 1 MASRDVISWTTMITAYVQHGHSDKALQMFPTMVSEG------FRPNEFTVCSALKACAEE 54
Query: 131 MNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKI 190
+ GKQ+HG + K +I + +L+ Y + + DA VF ++ R NT+ WT+ I
Sbjct: 55 KALRFGKQLHGAIVKKLYKYDIHVGSALVTMYARCGEVFDAQTVFDKMPRRNTITWTSMI 114
Query: 191 VNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGL 250
+ G + F++M R+ N T S+L ACG + + G+++HA I+K +
Sbjct: 115 SGYAQSGCGEEAVLLFRKMKMRRVFVNHLTIVSLLSACGSMQSIYH-GKELHAQIIKNCM 173
Query: 251 ESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLY 310
E + + LV Y + A R+ E + D+ +A W AM+ GY G VEA K L
Sbjct: 174 EENLQIGSTLVWFYNRRGEHTYATRILEAMPDRDAVA-WTAMISGYNNLGHNVEALKSLD 232
Query: 311 LMKASGIQIQESLINDLRIACSSISA 336
M G+ + AC+ + A
Sbjct: 233 EMLWDGVVPNTYTYSSALKACARLEA 258
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 98/225 (43%), Gaps = 13/225 (5%)
Query: 6 LPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLL-FLNRLLLMHVSCGQLDT 64
L I + + C + + A + N + + + I TL+ F NR G+
Sbjct: 143 LTIVSLLSACGSMQSIYHGKELHAQIIKNCMEENLQIGSTLVWFYNRR-------GEHTY 195
Query: 65 ARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVL 124
A ++ + MP RD +W MI GY ++ E + EM+ +V + L
Sbjct: 196 ATRILEAMPDRDAVAWTAMISGYNNLGHNVEALKSLDEMLWDG-----VVPNTYTYSSAL 250
Query: 125 KACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTV 184
KAC ++ G+++HG++ K + N+ + SLI+ Y + +++A VF + HN V
Sbjct: 251 KACARLEALQDGRRIHGVVNKTQAFSNVFVGCSLIDMYMRCGKVDEARRVFDAMPEHNLV 310
Query: 185 VWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
W I + G + M +E + + S+VL +CG
Sbjct: 311 TWKVMITGFTQNGRSEEALKYMFLMQQEGYVVDEFVLSTVLSSCG 355
>gi|115473581|ref|NP_001060389.1| Os07g0635800 [Oryza sativa Japonica Group]
gi|22293699|dbj|BAC10044.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|113611925|dbj|BAF22303.1| Os07g0635800 [Oryza sativa Japonica Group]
gi|125601219|gb|EAZ40795.1| hypothetical protein OsJ_25273 [Oryza sativa Japonica Group]
Length = 705
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 95/309 (30%), Positives = 152/309 (49%), Gaps = 10/309 (3%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRV---NIKPTLLFLNRLLLMHVSCGQLDTARQLF 69
Y +IK C A ++ + + N +P + L+ M CG LD AR +F
Sbjct: 158 YPPVIKACAALGAVAQGRKVWEMVETDIASGNARPNVFVQCALVDMFAKCGCLDEARNVF 217
Query: 70 DEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVC 129
+ M +RD +W MI G V ++ E + LF M G + I V+ AC
Sbjct: 218 ESMQVRDLAAWTAMIGGTVHSGNWLEVVDLFNHMRSEGFG-----VDSLIAATVISACGR 272
Query: 130 TMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAK 189
+++G +HG K G+S +I ++ +L++ Y K C+E AD +F + V W++
Sbjct: 273 AGELQVGTALHGCAVKSGASGDIYVSNALVDMYCKCGCVEMADCLFWSTNSKDVVSWSSL 332
Query: 190 IVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIG 249
IV + G + + F EM I NS T +S+L C V G+++H ++ G
Sbjct: 333 IVGYSQNGMHNVSVSLFCEMISLGINPNSSTLASILP-CLSVLKLIRSGKEIHCFSIRHG 391
Query: 250 LESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFL 309
LE E+V L+D+Y K L+R AE +F L +D K++A WN+M+ GY NG A L
Sbjct: 392 LERSEFVVSALIDLYSKQGLIRVAETIFWLTLD-KDLAIWNSMVAGYAVNGYSDSAFCAL 450
Query: 310 YLMKASGIQ 318
L++ G++
Sbjct: 451 RLLQKVGLK 459
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 71/284 (25%), Positives = 129/284 (45%), Gaps = 9/284 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ CG ++ A LF +D SW+ +IVGY + ++LF EM+
Sbjct: 299 NALVDMYCKCGCVEMADCLFWSTNSKDVVSWSSLIVGYSQNGMHNVSVSLFCEMIS---- 354
Query: 110 HMLLVFPAWIIVCVLKACVCTMNM-ELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
L + P + + C+ + + GK++H + G R+ + +LI+ Y K +
Sbjct: 355 --LGINPNSSTLASILPCLSVLKLIRSGKEIHCFSIRHGLERSEFVVSALIDLYSKQGLI 412
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
A+ +F + +W + + G+ F + + + +K + T SVL C
Sbjct: 413 RVAETIFWLTLDKDLAIWNSMVAGYAVNGYSDSAFCALRLLQKVGLKPDHVTVVSVLPLC 472
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
G+++HA ++K + S V L+DMY KC L A+ VF+L+ + +N +
Sbjct: 473 NQHHMLIQ-GKELHAYVIKYCINSVCSVNNALLDMYCKCGFLEVAKEVFQLMTE-RNTVT 530
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+N ++ + ++ +A F LMK GI + L CS
Sbjct: 531 YNILISSFGKHNHEDQALSFFDLMKRDGIAPDKVTFVALLSCCS 574
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 92/209 (44%), Gaps = 11/209 (5%)
Query: 132 NMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIV 191
+ + +++H + G L L+ Y K + A VF + R N+ W A I
Sbjct: 68 DFQEARRLHAAVLVGGHGHGTVLVAQLVRAYAKLGDVAHALRVFDGMPRRNSFAWNAVIK 127
Query: 192 NNCREGHFHQVFNDFKEMGRE-RIKKNSYTFSSVLKAC---GGVDDDGNCGRQMHANIVK 247
G F + F M + + + +T+ V+KAC G V + +I
Sbjct: 128 GLVDAGRFSEALEMFWGMVNDGSVAVDGFTYPPVIKACAALGAVAQGRKVWEMVETDIAS 187
Query: 248 IGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATK 307
+ +VQC LVDM+ KC L +A VFE + +++A+W AM+ G + +G ++E
Sbjct: 188 GNARPNVFVQCALVDMFAKCGCLDEARNVFESM-QVRDLAAWTAMIGGTVHSGNWLEVVD 246
Query: 308 FLYLMKASGIQIQESLINDLRIACSSISA 336
M++ G + D IA + ISA
Sbjct: 247 LFNHMRSEGFGV------DSLIAATVISA 269
>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
cordifolium]
Length = 679
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 93/289 (32%), Positives = 145/289 (50%), Gaps = 15/289 (5%)
Query: 56 HVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVF 115
+ S G +D A+++FDE+P++D SW MI GY ++ Y+E + LF EMMK M +
Sbjct: 154 YASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMK-----MDVKP 208
Query: 116 PAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVF 175
+ VL C + N+ELG+Q+H + G N+ L +LI+ Y K +E A +F
Sbjct: 209 DESTMATVLSTCTHSGNVELGRQIHSWIDNHGFGSNLKLVNALIDLYSKCGEMERAHGLF 268
Query: 176 SQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC---GGVD 232
L+ + + W I H + F+EM + N T S+L AC G +D
Sbjct: 269 EGLQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILPACAHLGAID 328
Query: 233 DDGNCGRQMHANIVK--IGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWN 290
GR +H I K G+ ++ +Q L+DMY KC + A +VF+ I++ K+++S N
Sbjct: 329 ----IGRWIHVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAANQVFDTILN-KSLSSCN 383
Query: 291 AMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKI 339
AM+ G+ +G A L MK GI+ + L ACS S +
Sbjct: 384 AMIFGFAMHGRADAAFDLLSRMKKDGIEPDDITFVGLLSACSHAGLSDL 432
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 71/294 (24%), Positives = 118/294 (40%), Gaps = 42/294 (14%)
Query: 79 SWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQ 138
SW MI G+ +D + L+ M+ FP + K+C + + GKQ
Sbjct: 45 SWNTMIRGHALSSDPISALNLYVYMISLGLSPNSYTFP-----FLFKSCAKSKAAQEGKQ 99
Query: 139 VHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFV------------------------ 174
+H + K G + ++ + SLI+ Y + +EDA V
Sbjct: 100 IHAQILKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHRDVVSYTAMITGYASRGN 159
Query: 175 -------FSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
F ++ + V W A I G + + F EM + +K + T ++VL
Sbjct: 160 MDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDVKPDESTMATVLST 219
Query: 228 CGGVDDDGNC--GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
C GN GRQ+H+ I G S+ + L+D+Y KC + A +FE + K+
Sbjct: 220 C---THSGNVELGRQIHSWIDNHGFGSNLKLVNALIDLYSKCGEMERAHGLFEGL-QYKD 275
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKI 339
+ SWN ++ GY + EA M G + + + AC+ + A I
Sbjct: 276 VISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILPACAHLGAIDI 329
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 75/297 (25%), Positives = 137/297 (46%), Gaps = 25/297 (8%)
Query: 7 PITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVN---IKPTLLFLNRLLLMHVSCGQLD 63
P + M T L CT +G EL I ++ L +N L+ ++ CG+++
Sbjct: 208 PDESTMATVL-STCTH----SGNVELGRQIHSWIDNHGFGSNLKLVNALIDLYSKCGEME 262
Query: 64 TARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI-IVC 122
A LF+ + +D SW +I GY + ++E + +F EM+K L P + ++
Sbjct: 263 RAHGLFEGLQYKDVISWNTLIGGYAYINHHKEALLVFQEMLK------LGETPNDVTMLS 316
Query: 123 VLKACVCTMNMELGKQVHGLLFK--LGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
+L AC +++G+ +H + K G N SL SLI+ Y K +E A+ VF +
Sbjct: 317 ILPACAHLGAIDIGRWIHVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAANQVFDTILN 376
Query: 181 HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--GGVDDDGNCG 238
+ A I G F+ M ++ I+ + TF +L AC G+ D G
Sbjct: 377 KSLSSCNAMIFGFAMHGRADAAFDLLSRMKKDGIEPDDITFVGLLSACSHAGLSD---LG 433
Query: 239 RQMHANI-VKIGLESD-EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
R++ ++ + +E E+ C ++D+ G+ L ++AE + + + + W ++L
Sbjct: 434 RKIFKSMTLDYRIEPKLEHYGC-MIDLLGRSGLFKEAEELINSMTMEPDGVIWGSLL 489
>gi|297606175|ref|NP_001058069.2| Os06g0613100 [Oryza sativa Japonica Group]
gi|255677226|dbj|BAF19983.2| Os06g0613100 [Oryza sativa Japonica Group]
Length = 590
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 84/259 (32%), Positives = 140/259 (54%), Gaps = 7/259 (2%)
Query: 43 KPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAE 102
+P + RL+ M+V CG LD AR + D MP R SW MI GY + E + LF +
Sbjct: 42 RPAVFLGTRLVTMYVRCGALDDARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIK 101
Query: 103 MMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFY 162
M++ + + + VL +C ++ GKQVH LL K ++ + SL++ Y
Sbjct: 102 MLRAG-----CIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMY 156
Query: 163 GKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFS 222
K +++A VF L + V TA I ++G + + F+++ E ++ N TF+
Sbjct: 157 AKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFT 216
Query: 223 SVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282
+++ A G+ + G+Q+HA I++ L +Q L+DMY KC L + RVF+ +++
Sbjct: 217 TLVTALSGL-ASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLE 275
Query: 283 KKNIASWNAMLVGYIRNGL 301
+++ SWNAML+GY R+GL
Sbjct: 276 -RSVVSWNAMLMGYGRHGL 293
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 100/215 (46%), Gaps = 2/215 (0%)
Query: 122 CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH 181
+ AC+ + G+QVH + + L L+ Y + L+DA V ++
Sbjct: 15 AAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPER 74
Query: 182 NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQM 241
+ V WT I + + + F +M R N YT ++VL +C G G+Q+
Sbjct: 75 SVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQ-GKQV 133
Query: 242 HANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGL 301
H+ +VK ES +V L+DMY K +++A RVF+ + ++++ S A++ GY + GL
Sbjct: 134 HSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTL-PERDVVSCTAIISGYAQKGL 192
Query: 302 YVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
EA + + G+Q L A S +++
Sbjct: 193 DEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLAS 227
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 119/261 (45%), Gaps = 18/261 (6%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
+ N + + + LL M+ + AR++FD +P RD S +I GY +E +
Sbjct: 139 KTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALD 198
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
LF ++ + F ++ A +++ GKQVH L+ + ++L SL
Sbjct: 199 LFRQLYSEGMQCNHVTF-----TTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSL 253
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
I+ Y K L + VF + + V W A ++ R G H+V + FK++ +E +K +S
Sbjct: 254 IDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDLHKE-VKPDS 312
Query: 219 YTFSSVLKAC--GGVDDDGNCGRQMHANIVKIGLESDEYVQCG----LVDMYGKCRLLRD 272
T +VL C GG+ D+ G + +VK E + G ++D+ G+ L
Sbjct: 313 VTLLAVLSGCSHGGLVDE---GLDIFDTVVK---EQSALLHTGHYGCIIDLLGRSGRLEK 366
Query: 273 AERVFELIVDKKNIASWNAML 293
A + E + + + W ++L
Sbjct: 367 ALNLIENMPFESTPSIWGSLL 387
>gi|14587213|dbj|BAB61147.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
gi|125570436|gb|EAZ11951.1| hypothetical protein OsJ_01824 [Oryza sativa Japonica Group]
Length = 735
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 90/287 (31%), Positives = 138/287 (48%), Gaps = 10/287 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL M+ G + AR++FD MP R+ SW+ M+ GY +E LF M++
Sbjct: 159 LLNMYCKLGIVSDARRVFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFRLMLEECPSEK 218
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
++ VL A + + +G+Q+HGL+ K G +S+ SL+ Y K C+ A
Sbjct: 219 ----SEFVATAVLSAVSVPLGLLMGEQMHGLIVKDGLLDFVSVENSLVTMYAKAGCMGAA 274
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
VF + N++ W+A I + G + F +M +TF VL A
Sbjct: 275 FHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNAS--- 331
Query: 232 DDDG--NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
D G G+Q H +VK+G E YV+ LVDMY KC + DA+ F+ + + +I W
Sbjct: 332 SDLGALAVGKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIADAKEGFDQLYE-VDIVLW 390
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
AM+ G+++NG + EA M GI +S I AC+ I+A
Sbjct: 391 TAMVSGHVQNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAA 437
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 96/338 (28%), Positives = 152/338 (44%), Gaps = 24/338 (7%)
Query: 11 DMYTCLIKECTFQKDSAGAFELLNHIRKRVN-----------IKPTLLFL----NRLLLM 55
D++ +++EC +K A +L+ + + +K LL N L+ M
Sbjct: 205 DLFRLMLEECPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKDGLLDFVSVENSLVTM 264
Query: 56 HVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVF 115
+ G + A +F+ R+ +W+ MI GY + +++F++M H
Sbjct: 265 YAKAGCMGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQM------HAAGFT 318
Query: 116 PA-WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFV 174
P + V VL A + +GKQ HGL+ KLG I + +L++ Y K C+ DA
Sbjct: 319 PTEFTFVGVLNASSDLGALAVGKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIADAKEG 378
Query: 175 FSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDD 234
F QL + V+WTA + + + G + + M +E I + T +S L+AC G+
Sbjct: 379 FDQLYEVDIVLWTAMVSGHVQNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAAL 438
Query: 235 GNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLV 294
G+Q+H IVK GL V L MY KC L D VF I D+ IA WN+++
Sbjct: 439 -EPGKQLHTQIVKYGLGLGAPVGSALSTMYSKCGNLEDGMSVFRRIPDRDVIA-WNSIIS 496
Query: 295 GYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
G+ +NG A MK G ++ ACS
Sbjct: 497 GFSQNGCGNGALDLFEEMKMEGTIPDNITFINILCACS 534
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 87/184 (47%), Gaps = 4/184 (2%)
Query: 140 HGLLFKLGSS-RNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGH 198
H L K+ S+ N+ + SL+N Y K + DA VF + + N+ W+ + E
Sbjct: 140 HALACKIPSAVSNVYVCTSLLNMYCKLGIVSDARRVFDGMPQRNSFSWSTMVAGYAAEKC 199
Query: 199 FHQVFNDFKEMGRE-RIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQ 257
+ F+ F+ M E +K+ + ++VL A V G QMH IVK GL V+
Sbjct: 200 SEEAFDLFRLMLEECPSEKSEFVATAVLSAV-SVPLGLLMGEQMHGLIVKDGLLDFVSVE 258
Query: 258 CGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGI 317
LV MY K + A VFE ++ +I +W+AM+ GY +NG A M A+G
Sbjct: 259 NSLVTMYAKAGCMGAAFHVFESSRERNSI-TWSAMITGYAQNGEADSAVSMFSQMHAAGF 317
Query: 318 QIQE 321
E
Sbjct: 318 TPTE 321
Score = 45.1 bits (105), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 79/182 (43%), Gaps = 7/182 (3%)
Query: 136 GKQVHGLLFKLGSSRNISLTGSLINFYGKF-RCLEDADF-VFSQLKRHNTVVWTAKIVNN 193
G+ +H K G++ + + SLINFY R L A F VF + V + + N
Sbjct: 31 GEALHAWALKSGAASHAPVANSLINFYSSLPRPLLAAAFAVFDDIPPAARDVTSWNSLLN 90
Query: 194 CREGHFH-QVFNDFKEM-GRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLE 251
GH + F+ M + + ++F++ A G HA KI
Sbjct: 91 PLSGHRPLDALSRFRSMLSSSTVLPSPHSFAAAFTAA-ARAASAPAGTAAHALACKIPSA 149
Query: 252 -SDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLY 310
S+ YV L++MY K ++ DA RVF+ + ++N SW+ M+ GY EA
Sbjct: 150 VSNVYVCTSLLNMYCKLGIVSDARRVFDGM-PQRNSFSWSTMVAGYAAEKCSEEAFDLFR 208
Query: 311 LM 312
LM
Sbjct: 209 LM 210
>gi|359488315|ref|XP_002278668.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g02330-like [Vitis vinifera]
Length = 877
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 93/320 (29%), Positives = 158/320 (49%), Gaps = 12/320 (3%)
Query: 15 CLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL 74
CLI+ D AF++ + + +R + N +L + G + A++LFD MP
Sbjct: 82 CLIQMYIKCSDLEFAFKVFDGMPQRDTVS-----WNAMLFGYAGRGDIGVAQKLFDAMPE 136
Query: 75 RDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNME 134
RD SW +I GY+ D+++ I +F +M G M VF VLK+C +
Sbjct: 137 RDVVSWNSLISGYLHNGDHRKVIDVFLQM-----GRMGTVFDRTTFAVVLKSCSSLEDHG 191
Query: 135 LGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNC 194
G Q+HGL K+G ++ +L++ Y K + L+ + F + N V W+A I
Sbjct: 192 GGIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFFHSMPEKNWVSWSAIIAGCV 251
Query: 195 REGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDE 254
+ FKEM + + + TF+SV ++C G+ G Q+H + +K +D
Sbjct: 252 QNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGLSAL-RLGSQLHGHALKTDFGTDV 310
Query: 255 YVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKA 314
+ +DMY KC L DA+++F + + N+ S+NA++VGY R+ +EA L++
Sbjct: 311 VIGTATLDMYMKCNNLSDAQKLFNSLPN-HNLQSYNAIIVGYARSDKGIEALGMFRLLQK 369
Query: 315 SGIQIQESLINDLRIACSSI 334
SG+ + E ++ AC+ I
Sbjct: 370 SGLGLDEVSLSGAFRACAVI 389
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 77/265 (29%), Positives = 129/265 (48%), Gaps = 7/265 (2%)
Query: 53 LLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHML 112
L M++ C L A++LF+ +P + S+ +IVGY E + +F + K G
Sbjct: 317 LDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLG--- 373
Query: 113 LVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDAD 172
+ +AC G QVHGL K NI + ++++ YGK L +A
Sbjct: 374 --LDEVSLSGAFRACAVIKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEAC 431
Query: 173 FVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVD 232
VF ++ + V W A I + + G+ + + F M + ++ + +T+ SVLKAC G
Sbjct: 432 LVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQ 491
Query: 233 DDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAM 292
NCG ++H I+K L D +V L+DMY KC ++ AE++ + + + + + SWNA+
Sbjct: 492 AL-NCGMEIHNRIIKSRLGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAE-QTVVSWNAI 549
Query: 293 LVGYIRNGLYVEATKFLYLMKASGI 317
+ G+ EA K M G+
Sbjct: 550 ISGFSLQKQSEEAQKTFSKMLEMGV 574
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 84/324 (25%), Positives = 150/324 (46%), Gaps = 8/324 (2%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
+ ++K C+ +D G ++ + + ++ ++ + LL M+ C +LD + Q F M
Sbjct: 177 FAVVLKSCSSLEDHGGGIQI-HGLAVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFFHSM 235
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN 132
P +++ SW+ +I G V D + + LF EM K G F + V ++C
Sbjct: 236 PEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFAS-----VFRSCAGLSA 290
Query: 133 MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192
+ LG Q+HG K ++ + + ++ Y K L DA +F+ L HN + A IV
Sbjct: 291 LRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIVG 350
Query: 193 NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLES 252
R + F+ + + + + + S +AC + D G Q+H +K +S
Sbjct: 351 YARSDKGIEALGMFRLLQKSGLGLDEVSLSGAFRACAVIKGDLE-GLQVHGLSMKSLCQS 409
Query: 253 DEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLM 312
+ V ++DMYGKC L +A VFE +V + + SWNA++ + +NG + M
Sbjct: 410 NICVANAILDMYGKCGALVEACLVFEEMVSRDAV-SWNAIIAAHEQNGNEEKTLSLFVWM 468
Query: 313 KASGIQIQESLINDLRIACSSISA 336
SG++ E + AC+ A
Sbjct: 469 LQSGMEPDEFTYGSVLKACAGWQA 492
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 136/285 (47%), Gaps = 7/285 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N +L M+ CG L A +F+EM RD SW +I + + ++ ++LF M++
Sbjct: 415 NAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGME 474
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ + VLKAC + G ++H + K + + +LI+ Y K +E
Sbjct: 475 PDEFTYGS-----VLKACAGWQALNCGMEIHNRIIKSRLGLDSFVGIALIDMYSKCGMME 529
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A+ + +L V W A I + + F +M + +++T++++L C
Sbjct: 530 KAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCA 589
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ G+Q+HA I+K L+SD Y+ LVDMY KC ++D + +FE ++ +W
Sbjct: 590 NLVTV-ELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEK-APNRDFVTW 647
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
NAM+ GY ++GL EA K M+ ++ + + AC +
Sbjct: 648 NAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHM 692
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 110/243 (45%), Gaps = 7/243 (2%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ CG ++ A +L D + + SW +I G+ +E F++M++ M
Sbjct: 518 LIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLE-----M 572
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+ + +L C + +ELGKQ+H + K + ++ +L++ Y K ++D
Sbjct: 573 GVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDF 632
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
+F + + V W A + + G + F+ M E +K N TF +VL+ACG +
Sbjct: 633 QLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHM 692
Query: 232 DDDGNCGRQMHANIVKIGLESD-EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWN 290
H+ + GL+ E+ C +VD+ G+ + A + E + + + W
Sbjct: 693 GLVEKGLHYFHSMLSNYGLDPQLEHYSC-VVDIMGRSGQVSKALELIEGMPFEADAVIWR 751
Query: 291 AML 293
+L
Sbjct: 752 TLL 754
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 4/107 (3%)
Query: 220 TFSSVLKACGGVDDDGNC-GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE 278
TFS + + C D C G+Q HA ++ + +V L+ MY KC L A +VF+
Sbjct: 44 TFSHIFQECS--DRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLEFAFKVFD 101
Query: 279 LIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLIN 325
+ +++ SWNAML GY G A K M + SLI+
Sbjct: 102 GM-PQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPERDVVSWNSLIS 147
>gi|359483597|ref|XP_002272690.2| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
mitochondrial [Vitis vinifera]
Length = 676
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 98/293 (33%), Positives = 151/293 (51%), Gaps = 13/293 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N ++ + G+++ +LF EMP R+ SW MI G +E + LF +MM G
Sbjct: 139 NSMIYGYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMM----G 194
Query: 110 HMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+ V P + CV+ AC + G Q+H +FKLG S + ++ +LI FY + +
Sbjct: 195 CGVEVKPTSSTYCCVITACANASALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQM 254
Query: 169 EDADFVFSQLKRHNTVVWTAKIVN---NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
ED+ VF N V+WTA + NC+ +VF EM RE + N +F+S L
Sbjct: 255 EDSLRVFHGKLHMNVVIWTALVTGYGLNCKHEDALKVFG---EMMREGVLPNQSSFTSAL 311
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
+C G++ + GR++H VK+GLE+D +V L+ MY +C L D +F+ I KKN
Sbjct: 312 NSCCGLEAL-DWGREIHTAAVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRI-SKKN 369
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASK 338
I SWN+++VG ++G + A F M S ++ E L ACS S+
Sbjct: 370 IVSWNSVIVGCAQHGCGMWALAFFNQMVRSMVEPDEITFTGLLSACSHSGMSQ 422
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 80/298 (26%), Positives = 128/298 (42%), Gaps = 23/298 (7%)
Query: 44 PTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEM 103
P + ++ + + D A QLF EMP++D SW MI G D AD LF EM
Sbjct: 40 PDVYLYTMMITGYARNYRFDHALQLFYEMPVKDVVSWNSMIKGCFDCADLTMARKLFDEM 99
Query: 104 MKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGK--QVHGLLFKLGSSRNISLTGSLINF 161
+R V + ++ GK GL +K+ R+I+ S+I
Sbjct: 100 PERS--------------VVSWTTMINGFLQFGKIEVAEGLFYKM-PFRDIAAWNSMIYG 144
Query: 162 YGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEM---GRERIKKNS 218
Y +ED +F ++ N + WT+ I + G + F++M G E +K S
Sbjct: 145 YCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVE-VKPTS 203
Query: 219 YTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE 278
T+ V+ AC G Q+HA++ K+G D Y+ L+ Y C+ + D+ RVF
Sbjct: 204 STYCCVITACANASALYQ-GVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSLRVFH 262
Query: 279 LIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+ N+ W A++ GY N + +A K M G+ +S +C + A
Sbjct: 263 GKL-HMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFTSALNSCCGLEA 319
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 66/290 (22%), Positives = 123/290 (42%), Gaps = 16/290 (5%)
Query: 9 TTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQL 68
T+ Y C+I C ++ H+ K + L+ + +C Q++ + ++
Sbjct: 202 TSSTYCCVITACANASALYQGVQIHAHVFK-LGYSFDAYISAALITFYANCKQMEDSLRV 260
Query: 69 FDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCVLKAC 127
F + W ++ GY +++ + +F EMM+ V P L +C
Sbjct: 261 FHGKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREG------VLPNQSSFTSALNSC 314
Query: 128 VCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC--LEDADFVFSQLKRHNTVV 185
++ G+++H KLG ++ + SLI Y +RC L D +F ++ + N V
Sbjct: 315 CGLEALDWGREIHTAAVKLGLETDVFVGNSLIVMY--YRCGNLNDGVVIFKRISKKNIVS 372
Query: 186 WTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG--GVDDDGNCGRQMHA 243
W + IV + G F +M R ++ + TF+ +L AC G+ G C + +
Sbjct: 373 WNSVIVGCAQHGCGMWALAFFNQMVRSMVEPDEITFTGLLSACSHSGMSQKGRCLFKYFS 432
Query: 244 NIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
++ D Y C +VD+ G+ L +AE + + K N W +L
Sbjct: 433 ENKSAEVKLDHYA-C-MVDILGRSGKLEEAEELIRNMPVKANSMVWLVLL 480
>gi|297596789|ref|NP_001043072.2| Os01g0374200 [Oryza sativa Japonica Group]
gi|255673241|dbj|BAF04986.2| Os01g0374200 [Oryza sativa Japonica Group]
Length = 629
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 90/287 (31%), Positives = 138/287 (48%), Gaps = 10/287 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL M+ G + AR++FD MP R+ SW+ M+ GY +E LF M++
Sbjct: 53 LLNMYCKLGIVSDARRVFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFRLMLEECPSEK 112
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
++ VL A + + +G+Q+HGL+ K G +S+ SL+ Y K C+ A
Sbjct: 113 ----SEFVATAVLSAVSVPLGLLMGEQMHGLIVKDGLLDFVSVENSLVTMYAKAGCMGAA 168
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
VF + N++ W+A I + G + F +M +TF VL A
Sbjct: 169 FHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNAS--- 225
Query: 232 DDDG--NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
D G G+Q H +VK+G E YV+ LVDMY KC + DA+ F+ + + +I W
Sbjct: 226 SDLGALAVGKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIADAKEGFDQLYE-VDIVLW 284
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
AM+ G+++NG + EA M GI +S I AC+ I+A
Sbjct: 285 TAMVSGHVQNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAA 331
Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 96/338 (28%), Positives = 152/338 (44%), Gaps = 24/338 (7%)
Query: 11 DMYTCLIKECTFQKDSAGAFELLNHIRKRVN-----------IKPTLLFL----NRLLLM 55
D++ +++EC +K A +L+ + + +K LL N L+ M
Sbjct: 99 DLFRLMLEECPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKDGLLDFVSVENSLVTM 158
Query: 56 HVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVF 115
+ G + A +F+ R+ +W+ MI GY + +++F++M H
Sbjct: 159 YAKAGCMGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQM------HAAGFT 212
Query: 116 PA-WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFV 174
P + V VL A + +GKQ HGL+ KLG I + +L++ Y K C+ DA
Sbjct: 213 PTEFTFVGVLNASSDLGALAVGKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIADAKEG 272
Query: 175 FSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDD 234
F QL + V+WTA + + + G + + M +E I + T +S L+AC G+
Sbjct: 273 FDQLYEVDIVLWTAMVSGHVQNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAAL 332
Query: 235 GNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLV 294
G+Q+H IVK GL V L MY KC L D VF I D+ IA WN+++
Sbjct: 333 -EPGKQLHTQIVKYGLGLGAPVGSALSTMYSKCGNLEDGMSVFRRIPDRDVIA-WNSIIS 390
Query: 295 GYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
G+ +NG A MK G ++ ACS
Sbjct: 391 GFSQNGCGNGALDLFEEMKMEGTIPDNITFINILCACS 428
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 87/184 (47%), Gaps = 4/184 (2%)
Query: 140 HGLLFKLGSS-RNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGH 198
H L K+ S+ N+ + SL+N Y K + DA VF + + N+ W+ + E
Sbjct: 34 HALACKIPSAVSNVYVCTSLLNMYCKLGIVSDARRVFDGMPQRNSFSWSTMVAGYAAEKC 93
Query: 199 FHQVFNDFKEMGRE-RIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQ 257
+ F+ F+ M E +K+ + ++VL A V G QMH IVK GL V+
Sbjct: 94 SEEAFDLFRLMLEECPSEKSEFVATAVLSAV-SVPLGLLMGEQMHGLIVKDGLLDFVSVE 152
Query: 258 CGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGI 317
LV MY K + A VFE ++ +I +W+AM+ GY +NG A M A+G
Sbjct: 153 NSLVTMYAKAGCMGAAFHVFESSRERNSI-TWSAMITGYAQNGEADSAVSMFSQMHAAGF 211
Query: 318 QIQE 321
E
Sbjct: 212 TPTE 215
>gi|297740626|emb|CBI30808.3| unnamed protein product [Vitis vinifera]
Length = 660
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 98/293 (33%), Positives = 151/293 (51%), Gaps = 13/293 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N ++ + G+++ +LF EMP R+ SW MI G +E + LF +MM G
Sbjct: 123 NSMIYGYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMM----G 178
Query: 110 HMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+ V P + CV+ AC + G Q+H +FKLG S + ++ +LI FY + +
Sbjct: 179 CGVEVKPTSSTYCCVITACANASALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQM 238
Query: 169 EDADFVFSQLKRHNTVVWTAKIVN---NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
ED+ VF N V+WTA + NC+ +VF EM RE + N +F+S L
Sbjct: 239 EDSLRVFHGKLHMNVVIWTALVTGYGLNCKHEDALKVFG---EMMREGVLPNQSSFTSAL 295
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
+C G++ + GR++H VK+GLE+D +V L+ MY +C L D +F+ I KKN
Sbjct: 296 NSCCGLEAL-DWGREIHTAAVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRI-SKKN 353
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASK 338
I SWN+++VG ++G + A F M S ++ E L ACS S+
Sbjct: 354 IVSWNSVIVGCAQHGCGMWALAFFNQMVRSMVEPDEITFTGLLSACSHSGMSQ 406
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 80/298 (26%), Positives = 128/298 (42%), Gaps = 23/298 (7%)
Query: 44 PTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEM 103
P + ++ + + D A QLF EMP++D SW MI G D AD LF EM
Sbjct: 24 PDVYLYTMMITGYARNYRFDHALQLFYEMPVKDVVSWNSMIKGCFDCADLTMARKLFDEM 83
Query: 104 MKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGK--QVHGLLFKLGSSRNISLTGSLINF 161
+R V + ++ GK GL +K+ R+I+ S+I
Sbjct: 84 PERS--------------VVSWTTMINGFLQFGKIEVAEGLFYKM-PFRDIAAWNSMIYG 128
Query: 162 YGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEM---GRERIKKNS 218
Y +ED +F ++ N + WT+ I + G + F++M G E +K S
Sbjct: 129 YCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVE-VKPTS 187
Query: 219 YTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE 278
T+ V+ AC G Q+HA++ K+G D Y+ L+ Y C+ + D+ RVF
Sbjct: 188 STYCCVITACANASALYQ-GVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSLRVFH 246
Query: 279 LIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+ N+ W A++ GY N + +A K M G+ +S +C + A
Sbjct: 247 GKL-HMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFTSALNSCCGLEA 303
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 66/290 (22%), Positives = 123/290 (42%), Gaps = 16/290 (5%)
Query: 9 TTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQL 68
T+ Y C+I C ++ H+ K + L+ + +C Q++ + ++
Sbjct: 186 TSSTYCCVITACANASALYQGVQIHAHVFK-LGYSFDAYISAALITFYANCKQMEDSLRV 244
Query: 69 FDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCVLKAC 127
F + W ++ GY +++ + +F EMM+ V P L +C
Sbjct: 245 FHGKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREG------VLPNQSSFTSALNSC 298
Query: 128 VCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC--LEDADFVFSQLKRHNTVV 185
++ G+++H KLG ++ + SLI Y +RC L D +F ++ + N V
Sbjct: 299 CGLEALDWGREIHTAAVKLGLETDVFVGNSLIVMY--YRCGNLNDGVVIFKRISKKNIVS 356
Query: 186 WTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG--GVDDDGNCGRQMHA 243
W + IV + G F +M R ++ + TF+ +L AC G+ G C + +
Sbjct: 357 WNSVIVGCAQHGCGMWALAFFNQMVRSMVEPDEITFTGLLSACSHSGMSQKGRCLFKYFS 416
Query: 244 NIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
++ D Y C +VD+ G+ L +AE + + K N W +L
Sbjct: 417 ENKSAEVKLDHYA-C-MVDILGRSGKLEEAEELIRNMPVKANSMVWLVLL 464
>gi|255543188|ref|XP_002512657.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548618|gb|EEF50109.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 837
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 94/336 (27%), Positives = 171/336 (50%), Gaps = 10/336 (2%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCG 60
M + + ++ D Y L + C K S ++++ + +R KP++ N +L M+ C
Sbjct: 81 MVDAGISVSPDSYRNLFEICGNSK-SLSDGKIIHELLRRTVEKPSVFLENTVLKMYCVCE 139
Query: 61 QLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWI 119
L+ A ++FD+M R+ SW +I Y + + ++LF M+ L + P + I
Sbjct: 140 SLEDAYKVFDKMIERNLISWGTIISAYAEHGLLDKALSLFISMIS------LGINPNSSI 193
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
+ +L++ + + +GKQ+H + G +S+ ++ N Y + L+ A+ + +
Sbjct: 194 YIDLLRSLLNPSLLGIGKQIHSHSIRSGLGAGVSINTAISNMYVRCGWLDGAELFINNMA 253
Query: 180 RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGR 239
N V WT +V + G + F +M E ++ + Y FS LKAC G+ + + GR
Sbjct: 254 EKNAVAWTGLMVGYTQAGKQKNALDLFAKMVCEDVELDEYVFSISLKACAGLKEL-SFGR 312
Query: 240 QMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRN 299
Q+H +IVK+GLES+ V LVD Y KC A +VFE I + ++ SW+AM+ GY +
Sbjct: 313 QIHGHIVKLGLESEVSVGTPLVDFYIKCASFELASKVFEGISEPNDV-SWSAMITGYCQI 371
Query: 300 GLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
G + EA K ++++ + + ACS+++
Sbjct: 372 GEFEEALKIFESLRSNIENLNSFTYTSIFQACSALA 407
Score = 140 bits (354), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 81/278 (29%), Positives = 134/278 (48%), Gaps = 7/278 (2%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+V CG LD A + M ++ +W ++VGY + + LFA+M+ +
Sbjct: 235 MYVRCGWLDGAELFINNMAEKNAVAWTGLMVGYTQAGKQKNALDLFAKMVCED-----VE 289
Query: 115 FPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFV 174
++ LKAC + G+Q+HG + KLG +S+ L++FY K E A V
Sbjct: 290 LDEYVFSISLKACAGLKELSFGRQIHGHIVKLGLESEVSVGTPLVDFYIKCASFELASKV 349
Query: 175 FSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDD 234
F + N V W+A I C+ G F + F+ + NS+T++S+ +AC + D
Sbjct: 350 FEGISEPNDVSWSAMITGYCQIGEFEEALKIFESLRSNIENLNSFTYTSIFQACSAL-AD 408
Query: 235 GNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLV 294
+ G Q+HA+ +K L + ++ + ++ MY +C L A FE I D + +W A++
Sbjct: 409 FSTGTQVHADAIKRSLIASQHGESAMITMYSRCGRLDYANLAFETI-DGPDAVAWTAIVA 467
Query: 295 GYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
GY G EA K + M+ SG + + ACS
Sbjct: 468 GYAYQGNATEALKHFWRMQGSGARPNAITFIAVLTACS 505
>gi|125559296|gb|EAZ04832.1| hypothetical protein OsI_27010 [Oryza sativa Indica Group]
Length = 700
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 95/309 (30%), Positives = 152/309 (49%), Gaps = 10/309 (3%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRV---NIKPTLLFLNRLLLMHVSCGQLDTARQLF 69
Y +IK C A ++ + + N +P + L+ M CG LD AR +F
Sbjct: 153 YPPVIKACAALGAVAQGRKVWEMVEADIASGNARPNVFVQCALVDMFAKCGCLDEARNVF 212
Query: 70 DEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVC 129
+ M +RD +W MI G V ++ E + LF M G + I V+ AC
Sbjct: 213 ESMQVRDLAAWTAMIGGTVHSGNWLEVVDLFNHMRSEGFG-----VDSLIAATVISACGR 267
Query: 130 TMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAK 189
+++G +HG K G+S +I ++ +L++ Y K C+E AD +F + V W++
Sbjct: 268 AGELQVGTALHGCAVKSGASGDIYVSNALVDMYCKCGCVEMADCLFWSTNSKDVVSWSSL 327
Query: 190 IVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIG 249
IV + G + + F EM I NS T +S+L C V G+++H ++ G
Sbjct: 328 IVGYSQNGMHNVSVSLFCEMISLGINPNSSTLASILP-CLSVLKLIRSGKEIHCFSIRHG 386
Query: 250 LESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFL 309
LE E+V L+D+Y K L+R AE +F L +D K++A WN+M+ GY NG A L
Sbjct: 387 LERSEFVVSALIDLYSKQGLIRVAETIFWLTLD-KDLAIWNSMVAGYAVNGYSDSAFCAL 445
Query: 310 YLMKASGIQ 318
L++ G++
Sbjct: 446 RLLQKVGLK 454
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 71/284 (25%), Positives = 129/284 (45%), Gaps = 9/284 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ CG ++ A LF +D SW+ +IVGY + ++LF EM+
Sbjct: 294 NALVDMYCKCGCVEMADCLFWSTNSKDVVSWSSLIVGYSQNGMHNVSVSLFCEMIS---- 349
Query: 110 HMLLVFPAWIIVCVLKACVCTMNM-ELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
L + P + + C+ + + GK++H + G R+ + +LI+ Y K +
Sbjct: 350 --LGINPNSSTLASILPCLSVLKLIRSGKEIHCFSIRHGLERSEFVVSALIDLYSKQGLI 407
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
A+ +F + +W + + G+ F + + + +K + T SVL C
Sbjct: 408 RVAETIFWLTLDKDLAIWNSMVAGYAVNGYSDSAFCALRLLQKVGLKPDHVTVVSVLPLC 467
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
G+++HA ++K + S V L+DMY KC L A+ VF+L+ + +N +
Sbjct: 468 NQHHMLIQ-GKELHAYVIKYCINSVCSVNNALLDMYCKCGFLEVAKEVFQLMTE-RNTVT 525
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+N ++ + ++ +A F LMK GI + L CS
Sbjct: 526 YNILISSFGKHNHEDQALSFFDLMKRDGIAPDKVTFVALLSCCS 569
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 93/209 (44%), Gaps = 11/209 (5%)
Query: 132 NMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIV 191
+ + +++H + G L L+ Y K + A VF + R N+ W A I
Sbjct: 63 DFQEARRLHAAVLVGGHGHGTVLVAQLVRAYAKLGDVAHALRVFDGMPRRNSFAWNAVIK 122
Query: 192 NNCREGHFHQVFNDFKEMGRE-RIKKNSYTFSSVLKAC---GGVDDDGNCGRQMHANIVK 247
G F + F M + + + +T+ V+KAC G V + A+I
Sbjct: 123 GLVDAGRFSEALEMFWGMVNDGSVAVDGFTYPPVIKACAALGAVAQGRKVWEMVEADIAS 182
Query: 248 IGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATK 307
+ +VQC LVDM+ KC L +A VFE + +++A+W AM+ G + +G ++E
Sbjct: 183 GNARPNVFVQCALVDMFAKCGCLDEARNVFESM-QVRDLAAWTAMIGGTVHSGNWLEVVD 241
Query: 308 FLYLMKASGIQIQESLINDLRIACSSISA 336
M++ G + D IA + ISA
Sbjct: 242 LFNHMRSEGFGV------DSLIAATVISA 264
>gi|125525852|gb|EAY73966.1| hypothetical protein OsI_01850 [Oryza sativa Indica Group]
Length = 641
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 85/290 (29%), Positives = 147/290 (50%), Gaps = 8/290 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEM-PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
N L+ M+ G +D AR++FDE R+ SW ++ YV + I +F EM+
Sbjct: 139 NALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGI 198
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
F CV+ AC + N+E G+QVHG++ ++G +++ +L++ Y K +
Sbjct: 199 QPTEFGFS-----CVVNACTGSRNIEAGRQVHGMVVRMGYDKDVFTANALVDMYVKMGRV 253
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+ A +F ++ + V W A I GH H+ +M + N +T SS+LKAC
Sbjct: 254 DIASLIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFTLSSILKAC 313
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
G + GRQ+H ++K+ +SD+Y+ GLVDMY K L DA +VF+ + + I
Sbjct: 314 AGT-GAFDLGRQIHGFMIKVNADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILC 372
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASK 338
NA++ G G + EA Y ++ G+ + + + + + +S+ A+
Sbjct: 373 -NALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLTAVLKSTASLEAAS 421
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 89/314 (28%), Positives = 157/314 (50%), Gaps = 12/314 (3%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
++C++ CT ++ ++ + R+ + N L+ M+V G++D A +F++M
Sbjct: 205 FSCVVNACTGSRNIEAGRQVHGMV-VRMGYDKDVFTANALVDMYVKMGRVDIASLIFEKM 263
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN 132
P D SW +I G V I L +M + G LV + + +LKAC T
Sbjct: 264 PDSDVVSWNALISGCVLNGHDHRAIELLLQM--KSSG---LVPNVFTLSSILKACAGTGA 318
Query: 133 MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192
+LG+Q+HG + K+ + + + L++ Y K L+DA VF + H ++ +++
Sbjct: 319 FDLGRQIHGFMIKVNADSDDYIGVGLVDMYAKNHFLDDARKVFDWM-FHRDLILCNALIS 377
Query: 193 NCREGHFH-QVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLE 251
C G H + + F E+ +E + N T ++VLK+ ++ + RQ+HA KIG
Sbjct: 378 GCSHGGRHDEALSLFYELRKEGLGVNRTTLTAVLKSTASLEA-ASTTRQVHALAEKIGFI 436
Query: 252 SDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIR--NGLYVEATKFL 309
D +V GL+D Y KC L DA RVFE +I ++ +M+ + +G++ E K
Sbjct: 437 FDAHVVNGLIDSYWKCSCLSDANRVFEE-CSSGDIIAFTSMITALSQCDHGMWNEVAKVR 495
Query: 310 YLMKASGIQIQESL 323
LMK S I+ + ++
Sbjct: 496 KLMKDSNIKKEPAM 509
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/290 (28%), Positives = 133/290 (45%), Gaps = 11/290 (3%)
Query: 48 FLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRK 107
F N L+ + C + AR++FDE+P SW+ ++ Y + + I F M R
Sbjct: 39 FRNHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGM--RA 96
Query: 108 KGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
+G F + VLK C + LG QVH + G ++ + +L+ YG F
Sbjct: 97 EGVCCNEFS---LPVVLK---CVPDARLGAQVHAMAMATGFGSDVFVANALVAMYGGFGF 150
Query: 168 LEDADFVFSQL-KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
++DA VF + N V W + + F EM I+ + FS V+
Sbjct: 151 MDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVN 210
Query: 227 ACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
AC G + GRQ+H +V++G + D + LVDMY K + A +FE + D ++
Sbjct: 211 ACTG-SRNIEAGRQVHGMVVRMGYDKDVFTANALVDMYVKMGRVDIASLIFEKMPD-SDV 268
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
SWNA++ G + NG A + L MK+SG+ ++ + AC+ A
Sbjct: 269 VSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFTLSSILKACAGTGA 318
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 82/189 (43%), Gaps = 12/189 (6%)
Query: 136 GKQVHGLLFK---LGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192
G +H L K L S RN LI+FY K R A VF ++ V W++ +
Sbjct: 23 GAHLHASLLKSGLLASFRN-----HLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTA 77
Query: 193 NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLES 252
G F M E + N ++ VLK D G Q+HA + G S
Sbjct: 78 YSNNGLPRSAIQAFHGMRAEGVCCNEFSLPVVLKCV----PDARLGAQVHAMAMATGFGS 133
Query: 253 DEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLM 312
D +V LV MYG + DA RVF+ ++N SWN ++ Y++N +A + M
Sbjct: 134 DVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEM 193
Query: 313 KASGIQIQE 321
SGIQ E
Sbjct: 194 VWSGIQPTE 202
>gi|359480463|ref|XP_003632466.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g37170-like, partial [Vitis vinifera]
Length = 621
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 90/302 (29%), Positives = 146/302 (48%), Gaps = 29/302 (9%)
Query: 44 PTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEM 103
P ++ NR+L M++ C L A++LFDEM RD SW +MI GY QE LF +M
Sbjct: 122 PGVVISNRILDMYIKCNSLVNAKRLFDEMAERDLCSWNIMISGYAKAGRLQEARKLFDQM 181
Query: 104 MKR----------------KKGHMLLVFPA-----------WIIVCVLKACVCTMNMELG 136
+R + L +F A + + L A ++ LG
Sbjct: 182 TERDNFSWTAMTSGYVRHDQHEEALELFRAMQRHENFKCNKFTMSSALAASAAIQSLHLG 241
Query: 137 KQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCRE 196
K++HG + ++G + + +L + YGK + +A +F + + V WTA I +E
Sbjct: 242 KEIHGHILRIGLDLDGVVWSALSDMYGKCGSIGEARHIFDKTVDRDVVSWTAMIDRYFKE 301
Query: 197 GHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYV 256
G + F F ++ + I N +TFS VL AC + G+Q+H + +IG + +
Sbjct: 302 GRREEGFALFSDLLKSGIWPNEFTFSGVLNACADHAAE-ELGKQVHGYMTRIGFDPSSFA 360
Query: 257 QCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASG 316
LV MY KC +++A RVF + + ++ SW +++ GY +NG EA +F L+ SG
Sbjct: 361 ASTLVHMYTKCGNIKNARRVFNGM-PRPDLVSWTSLISGYAQNGQPDEALQFFELLLKSG 419
Query: 317 IQ 318
Q
Sbjct: 420 TQ 421
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 78/303 (25%), Positives = 130/303 (42%), Gaps = 51/303 (16%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+ CG + AR +FD+ RD SW MI Y +E LF++++K +
Sbjct: 266 MYGKCGSIGEARHIFDKTVDRDVVSWTAMIDRYFKEGRREEGFALFSDLLKSG------I 319
Query: 115 FP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADF 173
+P + VL AC ELGKQVHG + ++G + +L++ Y K +++A
Sbjct: 320 WPNEFTFSGVLNACADHAAEELGKQVHGYMTRIGFDPSSFAASTLVHMYTKCGNIKNARR 379
Query: 174 VFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--GGV 231
VF+ + R + V WT+ I + G + F+ + + + + TF VL AC G+
Sbjct: 380 VFNGMPRPDLVSWTSLISGYAQNGQPDEALQFFELLLKSGTQPDHITFVGVLSACTHAGL 439
Query: 232 DDDG----------------------------NCGRQMHAN--IVKIGLESDEYVQCGLV 261
D G GR A I K+ +E D+++ L+
Sbjct: 440 VDKGLEYFDSIKEKHGLTHTADHYACLIDLLSRSGRLQEAEDIIDKMPIEPDKFLWASLL 499
Query: 262 DMYGKCRL-------LRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKA 314
G CR+ R AE +FE ++ +N A++ + Y GL+ + +M A
Sbjct: 500 ---GGCRIHGNLKLAKRAAEALFE--IEPENPATYTTLANIYATAGLWGGVAEVRKVMDA 554
Query: 315 SGI 317
G+
Sbjct: 555 RGV 557
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 96/198 (48%), Gaps = 3/198 (1%)
Query: 143 LFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQV 202
LF + R++ +I+ Y K L++A +F Q+ + WTA R +
Sbjct: 146 LFDEMAERDLCSWNIMISGYAKAGRLQEARKLFDQMTERDNFSWTAMTSGYVRHDQHEEA 205
Query: 203 FNDFKEMGR-ERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLV 261
F+ M R E K N +T SS L A + + G+++H +I++IGL+ D V L
Sbjct: 206 LELFRAMQRHENFKCNKFTMSSALAASAAIQS-LHLGKEIHGHILRIGLDLDGVVWSALS 264
Query: 262 DMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQE 321
DMYGKC + +A +F+ VD +++ SW AM+ Y + G E + SGI E
Sbjct: 265 DMYGKCGSIGEARHIFDKTVD-RDVVSWTAMIDRYFKEGRREEGFALFSDLLKSGIWPNE 323
Query: 322 SLINDLRIACSSISASKI 339
+ + AC+ +A ++
Sbjct: 324 FTFSGVLNACADHAAEEL 341
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 66/164 (40%), Gaps = 18/164 (10%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R+ P+ + L+ M+ CG + AR++F+ MP D SW +I GY E +
Sbjct: 351 RIGFDPSSFAASTLVHMYTKCGNIKNARRVFNGMPRPDLVSWTSLISGYAQNGQPDEALQ 410
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELG-------KQVHGLLFKLGSSRN 151
F ++K + F V VL AC ++ G K+ HGL +
Sbjct: 411 FFELLLKSGTQPDHITF-----VGVLSACTHAGLVDKGLEYFDSIKEKHGL------THT 459
Query: 152 ISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCR 195
LI+ + L++A+ + ++ A ++ CR
Sbjct: 460 ADHYACLIDLLSRSGRLQEAEDIIDKMPIEPDKFLWASLLGGCR 503
>gi|125597850|gb|EAZ37630.1| hypothetical protein OsJ_21964 [Oryza sativa Japonica Group]
Length = 583
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 84/259 (32%), Positives = 140/259 (54%), Gaps = 7/259 (2%)
Query: 43 KPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAE 102
+P + RL+ M+V CG LD AR + D MP R SW MI GY + E + LF +
Sbjct: 42 RPAVFLGTRLVTMYVRCGALDDARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIK 101
Query: 103 MMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFY 162
M++ + + + VL +C ++ GKQVH LL K ++ + SL++ Y
Sbjct: 102 MLRAG-----CIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMY 156
Query: 163 GKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFS 222
K +++A VF L + V TA I ++G + + F+++ E ++ N TF+
Sbjct: 157 AKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFT 216
Query: 223 SVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282
+++ A G+ + G+Q+HA I++ L +Q L+DMY KC L + RVF+ +++
Sbjct: 217 TLVTALSGLASL-DYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLE 275
Query: 283 KKNIASWNAMLVGYIRNGL 301
+++ SWNAML+GY R+GL
Sbjct: 276 -RSVVSWNAMLMGYGRHGL 293
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 100/215 (46%), Gaps = 2/215 (0%)
Query: 122 CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH 181
+ AC+ + G+QVH + + L L+ Y + L+DA V ++
Sbjct: 15 AAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPER 74
Query: 182 NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQM 241
+ V WT I + + + F +M R N YT ++VL +C G G+Q+
Sbjct: 75 SVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQ-GKQV 133
Query: 242 HANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGL 301
H+ +VK ES +V L+DMY K +++A RVF+ + ++++ S A++ GY + GL
Sbjct: 134 HSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTL-PERDVVSCTAIISGYAQKGL 192
Query: 302 YVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
EA + + G+Q L A S +++
Sbjct: 193 DEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLAS 227
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 119/261 (45%), Gaps = 18/261 (6%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
+ N + + + LL M+ + AR++FD +P RD S +I GY +E +
Sbjct: 139 KTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALD 198
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
LF ++ + F ++ A +++ GKQVH L+ + ++L SL
Sbjct: 199 LFRQLYSEGMQCNHVTF-----TTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSL 253
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
I+ Y K L + VF + + V W A ++ R G H+V + FK++ +E +K +S
Sbjct: 254 IDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDLHKE-VKPDS 312
Query: 219 YTFSSVLKAC--GGVDDDGNCGRQMHANIVKIGLESDEYVQCG----LVDMYGKCRLLRD 272
T +VL C GG+ D+ G + +VK E + G ++D+ G+ L
Sbjct: 313 VTLLAVLSGCSHGGLVDE---GLDIFDTVVK---EQSALLHTGHYGCIIDLLGRSGRLEK 366
Query: 273 AERVFELIVDKKNIASWNAML 293
A + E + + + W ++L
Sbjct: 367 ALNLIENMPFESTPSIWGSLL 387
>gi|297740913|emb|CBI31095.3| unnamed protein product [Vitis vinifera]
Length = 768
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 94/338 (27%), Positives = 163/338 (48%), Gaps = 21/338 (6%)
Query: 9 TTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQL 68
T Y + + K + A +L++ R + NRL+ + C +D +R+L
Sbjct: 3 TKTTYLASLLQTCIDKKAHLAGKLIHAHMLRSRLSDDTFLSNRLIEFYAKCNAIDASRRL 62
Query: 69 FDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLK--A 126
FD+MP RD +W ++ Y ++ ++ LFAEM +R +V +I + + A
Sbjct: 63 FDQMPKRDIYTWNAILGAYCKASELEDAHVLFAEMPERN-----IVSWNTLISALTRNGA 117
Query: 127 CVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVW 186
C +++E G++ HG+ K+G NI + +L+ Y K RC+ DA F + N V +
Sbjct: 118 CGALVDVECGRRCHGISIKIGLDNNIYVGNALLGMYAKCRCIGDAIQAFGDVPEPNEVSF 177
Query: 187 TAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG-------GVDDDGNC-- 237
TA + ++ F F+ M R RI +S + SSVL C G+ D +
Sbjct: 178 TAMMGGLADSDQVNEAFRLFRLMLRNRIHVDSVSLSSVLGVCSRGGCGEFGLHDSNDVLS 237
Query: 238 ----GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
G+Q+H +K G ESD ++ L+DMY K + AE +F + + + ++ SWN M+
Sbjct: 238 SDVHGQQVHCLTIKHGFESDLHLNNSLLDMYAKNGNMDSAEMIF-VNMPEVSVVSWNVMI 296
Query: 294 VGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
GY + +A ++L M+ G + E ++ +AC
Sbjct: 297 AGYGQKSQSSKAIEYLQRMQYHGFEPDEITYVNMLVAC 334
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 84/311 (27%), Positives = 144/311 (46%), Gaps = 10/311 (3%)
Query: 23 QKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAV 82
+ S+ A E L ++ +P + +L+ + G ++ RQ+FD M +SW
Sbjct: 302 KSQSSKAIEYLQRMQYH-GFEPDEITYVNMLVACIKSGDIEAGRQMFDGMSSPSLSSWNT 360
Query: 83 MIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHG 141
++ GY +++E + LF EM R V P + +L + M +E G+QVH
Sbjct: 361 ILSGYSQNENHKEAVKLFREMQFRS------VHPDRTTLAIILSSLAGMMLLEGGRQVHA 414
Query: 142 LLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQ 201
+ K +I L LI Y K +E A +F ++ + V W + + +
Sbjct: 415 VSQKAVFRTDIYLASGLIGMYSKCGKVEMAKRIFDRIAELDIVCWNSMMAGLSLNSLDKE 474
Query: 202 VFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLV 261
F FK+M + + + +++++VL C + GRQ+H+ I + G +D +V L+
Sbjct: 475 AFTFFKKMREKGMFPSQFSYATVLSCCAKLSSLSQ-GRQVHSQIAREGYMNDAFVGSALI 533
Query: 262 DMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQE 321
DMY KC + A VF++++ KN +WN M+ GY +NG EA M SG +
Sbjct: 534 DMYSKCGDVDAARWVFDMML-GKNTVTWNEMIHGYAQNGCGDEAVLLYEDMIGSGEKPDG 592
Query: 322 SLINDLRIACS 332
+ ACS
Sbjct: 593 ITFVAVLTACS 603
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 99/215 (46%), Gaps = 4/215 (1%)
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
+ +L+ C+ GK +H + + S + L+ LI FY K ++ + +F Q+
Sbjct: 8 LASLLQTCIDKKAHLAGKLIHAHMLRSRLSDDTFLSNRLIEFYAKCNAIDASRRLFDQMP 67
Query: 180 RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK--ACGGVDDDGNC 237
+ + W A + C+ F EM I + S++ + ACG + D C
Sbjct: 68 KRDIYTWNAILGAYCKASELEDAHVLFAEMPERNIVSWNTLISALTRNGACGALVDV-EC 126
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYI 297
GR+ H +KIGL+++ YV L+ MY KCR + DA + F V + N S+ AM+ G
Sbjct: 127 GRRCHGISIKIGLDNNIYVGNALLGMYAKCRCIGDAIQAFG-DVPEPNEVSFTAMMGGLA 185
Query: 298 RNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+ EA + LM + I + ++ + CS
Sbjct: 186 DSDQVNEAFRLFRLMLRNRIHVDSVSLSSVLGVCS 220
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 68/267 (25%), Positives = 123/267 (46%), Gaps = 23/267 (8%)
Query: 36 IRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQE 95
+ ++ + + + L+ M+ CG+++ A+++FD + D W M+ G + +E
Sbjct: 415 VSQKAVFRTDIYLASGLIGMYSKCGKVEMAKRIFDRIAELDIVCWNSMMAGLSLNSLDKE 474
Query: 96 CITLFAEMMKRKKGHMLLVFPA-WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISL 154
T F +M R+KG +FP+ + VL C ++ G+QVH + + G + +
Sbjct: 475 AFTFFKKM--REKG----MFPSQFSYATVLSCCAKLSSLSQGRQVHSQIAREGYMNDAFV 528
Query: 155 TGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERI 214
+LI+ Y K ++ A +VF + NTV W I + G + +++M
Sbjct: 529 GSALIDMYSKCGDVDAARWVFDMMLGKNTVTWNEMIHGYAQNGCGDEAVLLYEDMIGSGE 588
Query: 215 KKNSYTFSSVLKAC--GGVDDDG----NCGRQMHANIVKIGLES--DEYVQCGLVDMYGK 266
K + TF +VL AC G+ D G N +Q H G+E D Y C ++D G+
Sbjct: 589 KPDGITFVAVLTACSHSGLVDTGIKIFNSMQQEH------GVEPLVDHYT-C-IIDSLGR 640
Query: 267 CRLLRDAERVFELIVDKKNIASWNAML 293
L +AE + + + K + W +L
Sbjct: 641 AGRLHEAEVLIDKMPCKYDPIIWEVLL 667
>gi|51090919|dbj|BAD35524.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|51090953|dbj|BAD35556.1| selenium-binding protein-like [Oryza sativa Japonica Group]
Length = 615
Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 84/259 (32%), Positives = 140/259 (54%), Gaps = 7/259 (2%)
Query: 43 KPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAE 102
+P + RL+ M+V CG LD AR + D MP R SW MI GY + E + LF +
Sbjct: 74 RPAVFLGTRLVTMYVRCGALDDARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIK 133
Query: 103 MMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFY 162
M++ + + + VL +C ++ GKQVH LL K ++ + SL++ Y
Sbjct: 134 MLRAG-----CIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMY 188
Query: 163 GKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFS 222
K +++A VF L + V TA I ++G + + F+++ E ++ N TF+
Sbjct: 189 AKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFT 248
Query: 223 SVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282
+++ A G+ + G+Q+HA I++ L +Q L+DMY KC L + RVF+ +++
Sbjct: 249 TLVTALSGLASL-DYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLE 307
Query: 283 KKNIASWNAMLVGYIRNGL 301
+++ SWNAML+GY R+GL
Sbjct: 308 -RSVVSWNAMLMGYGRHGL 325
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 100/215 (46%), Gaps = 2/215 (0%)
Query: 122 CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH 181
+ AC+ + G+QVH + + L L+ Y + L+DA V ++
Sbjct: 47 AAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPER 106
Query: 182 NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQM 241
+ V WT I + + + F +M R N YT ++VL +C G G+Q+
Sbjct: 107 SVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQ-GKQV 165
Query: 242 HANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGL 301
H+ +VK ES +V L+DMY K +++A RVF+ + ++++ S A++ GY + GL
Sbjct: 166 HSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTL-PERDVVSCTAIISGYAQKGL 224
Query: 302 YVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
EA + + G+Q L A S +++
Sbjct: 225 DEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLAS 259
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 119/261 (45%), Gaps = 18/261 (6%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
+ N + + + LL M+ + AR++FD +P RD S +I GY +E +
Sbjct: 171 KTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALD 230
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
LF ++ + F ++ A +++ GKQVH L+ + ++L SL
Sbjct: 231 LFRQLYSEGMQCNHVTF-----TTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSL 285
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
I+ Y K L + VF + + V W A ++ R G H+V + FK++ +E +K +S
Sbjct: 286 IDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDLHKE-VKPDS 344
Query: 219 YTFSSVLKAC--GGVDDDGNCGRQMHANIVKIGLESDEYVQCG----LVDMYGKCRLLRD 272
T +VL C GG+ D+ G + +VK E + G ++D+ G+ L
Sbjct: 345 VTLLAVLSGCSHGGLVDE---GLDIFDTVVK---EQSALLHTGHYGCIIDLLGRSGRLEK 398
Query: 273 AERVFELIVDKKNIASWNAML 293
A + E + + + W ++L
Sbjct: 399 ALNLIENMPFESTPSIWGSLL 419
>gi|449461943|ref|XP_004148701.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
chloroplastic-like [Cucumis sativus]
gi|449517215|ref|XP_004165641.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
chloroplastic-like [Cucumis sativus]
Length = 706
Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 100/334 (29%), Positives = 148/334 (44%), Gaps = 36/334 (10%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
Y LI C K G L N++ +P NR+LLMHV CG + A +LFDEM
Sbjct: 135 YDALINACIGLKSIRGVKRLCNYMVDN-GFEPDQYMRNRVLLMHVKCGMMIDACRLFDEM 193
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEM--------------MKRKKGHMLLVFPAW 118
P R+ SW +I GYVD +Y E LF M M R + ++FP
Sbjct: 194 PARNAVSWGTIISGYVDSGNYVEAFRLFILMREEFYDCGPRTFATMIRASAGLEIIFP-- 251
Query: 119 IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL 178
G+Q+H K G ++I ++ +LI+ Y K LEDA VF ++
Sbjct: 252 -----------------GRQLHSCAIKAGLGQDIFVSCALIDMYSKCGSLEDAHCVFDEM 294
Query: 179 KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCG 238
V W + I G+ + + + EM +K + +TFS +++ C +
Sbjct: 295 PDKTIVGWNSIIAGYALHGYSEEALDLYHEMRDSGVKMDHFTFSIIIRICSRLASVAR-A 353
Query: 239 RQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIR 298
+Q+HA++V+ G D LVD Y K + DA VF+ + +NI SWNA++ GY
Sbjct: 354 KQVHASLVRNGFGLDVVANTALVDFYSKWGKVDDARHVFDRM-SCRNIISWNALIAGYGN 412
Query: 299 NGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+G EA M G+ + ACS
Sbjct: 413 HGHGEEAIDMFEKMLREGMMPNHVTFLAVLSACS 446
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 86/167 (51%), Gaps = 2/167 (1%)
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
DA +F ++ N V W I G++ + F F M E TF+++++A
Sbjct: 185 DACRLFDEMPARNAVSWGTIISGYVDSGNYVEAFRLFILMREEFYDCGPRTFATMIRASA 244
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
G++ GRQ+H+ +K GL D +V C L+DMY KC L DA VF+ + DK I W
Sbjct: 245 GLEIIFP-GRQLHSCAIKAGLGQDIFVSCALIDMYSKCGSLEDAHCVFDEMPDK-TIVGW 302
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
N+++ GY +G EA + M+ SG+++ + + CS +++
Sbjct: 303 NSIIAGYALHGYSEEALDLYHEMRDSGVKMDHFTFSIIIRICSRLAS 349
>gi|449438685|ref|XP_004137118.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g02330-like [Cucumis sativus]
gi|449528041|ref|XP_004171015.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g02330-like [Cucumis sativus]
Length = 868
Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 97/305 (31%), Positives = 145/305 (47%), Gaps = 40/305 (13%)
Query: 44 PTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVM-------------------- 83
PT+ N L+ M+V C L+ A ++F+EMP RD SW M
Sbjct: 57 PTVFVTNCLIQMYVKCCALEYAYKVFEEMPQRDIVSWNTMVFGCAGAGRMELAQAVFNSM 116
Query: 84 ------------IVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTM 131
I GY+ D Q+ I +F +M R G M F + LK C
Sbjct: 117 PHHGDVVSWNSLISGYLQNGDIQKSIAVFLKM--RDLGVM---FDHTTLAVSLKICSLLE 171
Query: 132 NMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIV 191
+ LG Q+HG+ ++G ++ +L++ Y K LED+ VFS+L N + W+A I
Sbjct: 172 DQVLGIQIHGIAVQMGFDYDVVTGSALVDMYAKCNSLEDSLDVFSELPDKNWISWSAAIA 231
Query: 192 NNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLE 251
+ + FKEM R+ I + T++SV ++C G+ G Q+H + +K
Sbjct: 232 GCVQNDQLLRGLKLFKEMQRKGIGVSQSTYASVFRSCAGLSAS-RLGTQLHCHALKTDFG 290
Query: 252 SDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATK-FLY 310
SD V +DMY KC + DA ++F L+ D N+ S+NAM++GY RN +A K FL
Sbjct: 291 SDVIVGTATLDMYAKCDNMSDAYKLFSLLPD-HNLQSYNAMIIGYARNEQGFQAFKLFLQ 349
Query: 311 LMKAS 315
L K S
Sbjct: 350 LQKNS 354
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 86/309 (27%), Positives = 148/309 (47%), Gaps = 13/309 (4%)
Query: 33 LNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVAD 92
L+ + + N+ + N +L M+ CG L A LFDEM +RD SW +I
Sbjct: 381 LHGLAIKSNLSSNICVANAILDMYGKCGALVEASGLFDEMEIRDPVSWNAIITACEQNES 440
Query: 93 YQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNI 152
+ ++ F M++ K + + VLKAC G +VHG + K G +
Sbjct: 441 EGKTLSHFGAMLRSKMEPDEFTYGS-----VLKACAGQRAFSNGMEVHGRIIKSGMGLKM 495
Query: 153 SLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN---NCREGHFHQVFNDFKEM 209
+ +L++ Y K +E+A+ + +L+ V W A I + + F+ EM
Sbjct: 496 FVGSALVDMYSKCGMMEEAEKIHYRLEEQTMVSWNAIISGFSLQKKSEDSQRFFSHMLEM 555
Query: 210 GRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRL 269
G ++ +++T+++VL C + G G+Q+HA ++K+ L SD Y+ LVDMY KC
Sbjct: 556 G---VEPDNFTYATVLDTCANLATVG-LGKQIHAQMIKLELLSDVYITSTLVDMYSKCGN 611
Query: 270 LRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRI 329
+ D+ +F K++ +WNAM+ G+ +GL EA + M I+ + +
Sbjct: 612 MHDSLLMFRK-APKRDSVTWNAMICGFAYHGLGEEALELFEHMLHENIKPNHATFVSVLR 670
Query: 330 ACSSISASK 338
ACS + +K
Sbjct: 671 ACSHVGNAK 679
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 79/312 (25%), Positives = 143/312 (45%), Gaps = 10/312 (3%)
Query: 8 ITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQ 67
++ Y + + C S +L H K + ++ L M+ C + A +
Sbjct: 256 VSQSTYASVFRSCAGLSASRLGTQLHCHALK-TDFGSDVIVGTATLDMYAKCDNMSDAYK 314
Query: 68 LFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKAC 127
LF +P + S+ MI+GY + LF ++ K F + L A
Sbjct: 315 LFSLLPDHNLQSYNAMIIGYARNEQGFQAFKLFLQLQKNS-----FSFDEVSLSGALSAA 369
Query: 128 VCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWT 187
G Q+HGL K S NI + ++++ YGK L +A +F +++ + V W
Sbjct: 370 AVIKGHSEGLQLHGLAIKSNLSSNICVANAILDMYGKCGALVEASGLFDEMEIRDPVSWN 429
Query: 188 AKIVNNCREGHFH-QVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIV 246
A I+ C + + + F M R +++ + +T+ SVLKAC G N G ++H I+
Sbjct: 430 A-IITACEQNESEGKTLSHFGAMLRSKMEPDEFTYGSVLKACAGQRAFSN-GMEVHGRII 487
Query: 247 KIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEAT 306
K G+ +V LVDMY KC ++ +AE++ ++++ + SWNA++ G+ ++
Sbjct: 488 KSGMGLKMFVGSALVDMYSKCGMMEEAEKI-HYRLEEQTMVSWNAIISGFSLQKKSEDSQ 546
Query: 307 KFLYLMKASGIQ 318
+F M G++
Sbjct: 547 RFFSHMLEMGVE 558
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 68/286 (23%), Positives = 128/286 (44%), Gaps = 16/286 (5%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
Y ++K C Q+ + E+ I K + + + L+ M+ CG ++ A ++ +
Sbjct: 463 YGSVLKACAGQRAFSNGMEVHGRIIKS-GMGLKMFVGSALVDMYSKCGMMEEAEKIHYRL 521
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN 132
+ SW +I G+ ++ F+ M++ M + + VL C
Sbjct: 522 EEQTMVSWNAIISGFSLQKKSEDSQRFFSHMLE-----MGVEPDNFTYATVLDTCANLAT 576
Query: 133 MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192
+ LGKQ+H + KL ++ +T +L++ Y K + D+ +F + + ++V W A I
Sbjct: 577 VGLGKQIHAQMIKLELLSDVYITSTLVDMYSKCGNMHDSLLMFRKAPKRDSVTWNAMICG 636
Query: 193 NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGR-----QMHANIVK 247
G + F+ M E IK N TF SVL+AC V GN + Q A+I
Sbjct: 637 FAYHGLGEEALELFEHMLHENIKPNHATFVSVLRACSHV---GNAKKGLFYFQKMASIYA 693
Query: 248 IGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
+ + + Y C +VD+ G+ + +A R+ + + + + W +L
Sbjct: 694 LEPQLEHY-SC-MVDILGRSGQVEEALRLIQDMPFEADAIIWRTLL 737
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/249 (25%), Positives = 104/249 (41%), Gaps = 34/249 (13%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK------------------ 164
+ + C ++ GK+ H + G + + +T LI Y K
Sbjct: 30 IFQECSNRRALKPGKEAHAHMILSGFTPTVFVTNCLIQMYVKCCALEYAYKVFEEMPQRD 89
Query: 165 --------FRC-----LEDADFVFSQLKRHNTVV-WTAKIVNNCREGHFHQVFNDFKEMG 210
F C +E A VF+ + H VV W + I + G + F +M
Sbjct: 90 IVSWNTMVFGCAGAGRMELAQAVFNSMPHHGDVVSWNSLISGYLQNGDIQKSIAVFLKMR 149
Query: 211 RERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLL 270
+ + T + LK C ++D G Q+H V++G + D LVDMY KC L
Sbjct: 150 DLGVMFDHTTLAVSLKICSLLEDQ-VLGIQIHGIAVQMGFDYDVVTGSALVDMYAKCNSL 208
Query: 271 RDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIA 330
D+ VF + DK N SW+A + G ++N + K M+ GI + +S + +
Sbjct: 209 EDSLDVFSELPDK-NWISWSAAIAGCVQNDQLLRGLKLFKEMQRKGIGVSQSTYASVFRS 267
Query: 331 CSSISASKI 339
C+ +SAS++
Sbjct: 268 CAGLSASRL 276
>gi|255539110|ref|XP_002510620.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223551321|gb|EEF52807.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 708
Score = 140 bits (354), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 92/290 (31%), Positives = 144/290 (49%), Gaps = 9/290 (3%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L LN L+ M+ CG LD + Q+F+ ++ +W+ MI GY D + + LF+ M
Sbjct: 247 LSILNALVTMYAKCGSLDDSLQVFEMSNDKNSITWSAMITGYAQSGDSHKALKLFSRM-- 304
Query: 106 RKKGHMLLVFPA-WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
H + P+ + +V VL AC +E GKQVH L KLG + + +L++ Y K
Sbjct: 305 ----HFAGINPSEFTLVGVLNACSDACAVEEGKQVHNYLLKLGFESQLYIMTALVDMYAK 360
Query: 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
EDA F+ L++ + V+WT+ I + G + + M E I N T +SV
Sbjct: 361 SGVTEDARKGFNYLQQPDLVLWTSMIAGYVQNGENEDALSLYCRMQMEGILPNELTMASV 420
Query: 225 LKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
LKAC + + GRQ+HA +K GL + + L MY KC L + VF + ++
Sbjct: 421 LKACSNL-AAFDQGRQIHARTIKYGLGLEVTIGSALSTMYAKCGNLEEGNIVFRRM-PER 478
Query: 285 NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
+I SWNAM+ G +NG EA + M+ + + ++ ACS +
Sbjct: 479 DIISWNAMISGLSQNGYGKEALELFEEMRQQDTKPDDVTFVNVLSACSHM 528
Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 88/290 (30%), Positives = 142/290 (48%), Gaps = 13/290 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+ LL M+ G L AR++FD MP R+ +WA MI GY E +F E+M+R++
Sbjct: 150 SSLLNMYCKAGLLFEAREVFDRMPERNEVTWATMISGYAIQRLAGEAFEVF-ELMRREEE 208
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ + VL A ++ GKQ+H L K G +S+ +L+ Y K L+
Sbjct: 209 DV----NEFAFTSVLSALAVPEFVDSGKQIHCLAVKTGLLVFLSILNALVTMYAKCGSLD 264
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
D+ VF N++ W+A I + G H+ F M I + +T VL AC
Sbjct: 265 DSLQVFEMSNDKNSITWSAMITGYAQSGDSHKALKLFSRMHFAGINPSEFTLVGVLNACS 324
Query: 230 ---GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
V++ G+Q+H ++K+G ES Y+ LVDMY K + DA + F + + ++
Sbjct: 325 DACAVEE----GKQVHNYLLKLGFESQLYIMTALVDMYAKSGVTEDARKGFNYL-QQPDL 379
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
W +M+ GY++NG +A M+ GI E + + ACS+++A
Sbjct: 380 VLWTSMIAGYVQNGENEDALSLYCRMQMEGILPNELTMASVLKACSNLAA 429
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 90/316 (28%), Positives = 140/316 (44%), Gaps = 5/316 (1%)
Query: 21 TFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSW 80
T QK L I K + + N L+ + C L A+ +FD + +D SW
Sbjct: 18 THQKSLQKGRALHAQIIKLASSSSCIYLANSLINFYAKCCHLPKAKLVFDRIHNKDVISW 77
Query: 81 AVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVH 140
+I GY + E+ +R + +L A + A ++ G+Q H
Sbjct: 78 NCLINGYSQQGPTGSSFVM--ELFQRMRADNILP-NAHTFSGIFTAASNLSSIFFGQQAH 134
Query: 141 GLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFH 200
+ K+ ++ + SL+N Y K L +A VF ++ N V W I +
Sbjct: 135 AVAIKMACFYDVFVGSSLLNMYCKAGLLFEAREVFDRMPERNEVTWATMISGYAIQRLAG 194
Query: 201 QVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGL 260
+ F F+ M RE N + F+SVL A V + + G+Q+H VK GL + L
Sbjct: 195 EAFEVFELMRREEEDVNEFAFTSVLSAL-AVPEFVDSGKQIHCLAVKTGLLVFLSILNAL 253
Query: 261 VDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQ 320
V MY KC L D+ +VFE+ DK +I +W+AM+ GY ++G +A K M +GI
Sbjct: 254 VTMYAKCGSLDDSLQVFEMSNDKNSI-TWSAMITGYAQSGDSHKALKLFSRMHFAGINPS 312
Query: 321 ESLINDLRIACSSISA 336
E + + ACS A
Sbjct: 313 EFTLVGVLNACSDACA 328
>gi|115446089|ref|NP_001046824.1| Os02g0468800 [Oryza sativa Japonica Group]
gi|47497329|dbj|BAD19370.1| selenium binding protein-like protein [Oryza sativa Japonica Group]
gi|113536355|dbj|BAF08738.1| Os02g0468800 [Oryza sativa Japonica Group]
gi|125582005|gb|EAZ22936.1| hypothetical protein OsJ_06625 [Oryza sativa Japonica Group]
Length = 603
Score = 140 bits (354), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 97/293 (33%), Positives = 135/293 (46%), Gaps = 7/293 (2%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
+ + L LN +L M V LD AR LFD + + +W + GY+ DY E
Sbjct: 182 KSGLDAGLPVLNSVLTMLVRGSHLDAARLLFDGICNKSVVTWTALASGYLLRGDYLEVFD 241
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
LF M K + ++V ++ A V N+ + K VH L+ KLG L SL
Sbjct: 242 LFNRMRGVGKN-----VDSVVLVNLISAAVLFGNLSVAKGVHALIIKLGFECEEDLAASL 296
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
IN Y K LE A VF + N VVWT+ I GH ++ F M I+ N
Sbjct: 297 INLYAKCGDLESAREVFDAVHMANVVVWTSMISGYVEGGHLNEALVMFDSMVCANIEPNE 356
Query: 219 YTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE 278
T SSVL AC + N G+++ + GL S+ V GL+DMY K + A ++FE
Sbjct: 357 ATLSSVLSACAKL-GSANLGKKVEEQAIATGLHSEPRVATGLIDMYSKFGSINLARKIFE 415
Query: 279 LIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
+ + ++IA W+AM+ GY NG EA MK G Q + AC
Sbjct: 416 GVTN-RDIAVWSAMINGYACNGEGSEALVLFKEMKNKGFQPDGIAFTHVLTAC 467
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 79/291 (27%), Positives = 138/291 (47%), Gaps = 10/291 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL M+ CG+L AR+LFDEMP SW M+ Y + +E + +F M R+ G
Sbjct: 93 LLDMYAKCGRLPDARRLFDEMPRPTLVSWNCMVAAYGRSSQVEESVAVFNAM--RRAG-- 148
Query: 112 LLVFPA-WIIVCVLKACVCTMNME-LGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
V P+ +V VL CV +++ G V+G K G + + S++ + L+
Sbjct: 149 --VRPSEGTLVGVLSGCVDSVSASNPGMCVYGFSVKSGLDAGLPVLNSVLTMLVRGSHLD 206
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A +F + + V WTA G + +VF+ F M +S +++ A
Sbjct: 207 AARLLFDGICNKSVVTWTALASGYLLRGDYLEVFDLFNRMRGVGKNVDSVVLVNLISA-A 265
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ + + + +HA I+K+G E +E + L+++Y KC L A VF+ V N+ W
Sbjct: 266 VLFGNLSVAKGVHALIIKLGFECEEDLAASLINLYAKCGDLESAREVFD-AVHMANVVVW 324
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKIN 340
+M+ GY+ G EA M + I+ E+ ++ + AC+ + ++ +
Sbjct: 325 TSMISGYVEGGHLNEALVMFDSMVCANIEPNEATLSSVLSACAKLGSANLG 375
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 73/171 (42%), Gaps = 1/171 (0%)
Query: 157 SLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKK 216
SL++ Y K L DA +F ++ R V W + R + F M R ++
Sbjct: 92 SLLDMYAKCGRLPDARRLFDEMPRPTLVSWNCMVAAYGRSSQVEESVAVFNAMRRAGVRP 151
Query: 217 NSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERV 276
+ T VL C N G ++ VK GL++ V ++ M + L A +
Sbjct: 152 SEGTLVGVLSGCVDSVSASNPGMCVYGFSVKSGLDAGLPVLNSVLTMLVRGSHLDAARLL 211
Query: 277 FELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDL 327
F+ I + K++ +W A+ GY+ G Y+E M+ G + ++ +L
Sbjct: 212 FDGICN-KSVVTWTALASGYLLRGDYLEVFDLFNRMRGVGKNVDSVVLVNL 261
>gi|15240591|ref|NP_196831.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75181128|sp|Q9LYU9.1|PP378_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g13270, chloroplastic; Flags: Precursor
gi|7529282|emb|CAB86634.1| putative protein [Arabidopsis thaliana]
gi|332004490|gb|AED91873.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 752
Score = 140 bits (354), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 91/325 (28%), Positives = 157/325 (48%), Gaps = 9/325 (2%)
Query: 9 TTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQL 68
+ MYT L+K + ++ H+ R + ++ M+V CG L A+++
Sbjct: 183 PSSMYTTLLKSLVNPRALDFGRQIHAHV-IRAGLCSNTSIETGIVNMYVKCGWLVGAKRV 241
Query: 69 FDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACV 128
FD+M ++ + ++VGY ++ + LF +++ + + +++ VLKAC
Sbjct: 242 FDQMAVKKPVACTGLMVGYTQAGRARDALKLFVDLVTEG-----VEWDSFVFSVVLKACA 296
Query: 129 CTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTA 188
+ LGKQ+H + KLG +S+ L++FY K E A F +++ N V W+A
Sbjct: 297 SLEELNLGKQIHACVAKLGLESEVSVGTPLVDFYIKCSSFESACRAFQEIREPNDVSWSA 356
Query: 189 KIVNNCREGHFHQVFNDFKEMGRERIK-KNSYTFSSVLKACGGVDDDGNCGRQMHANIVK 247
I C+ F + FK + + NS+T++S+ +AC V D N G Q+HA+ +K
Sbjct: 357 IISGYCQMSQFEEAVKTFKSLRSKNASILNSFTYTSIFQAC-SVLADCNIGGQVHADAIK 415
Query: 248 IGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATK 307
L +Y + L+ MY KC L DA VFE + D +I +W A + G+ G EA +
Sbjct: 416 RSLIGSQYGESALITMYSKCGCLDDANEVFESM-DNPDIVAWTAFISGHAYYGNASEALR 474
Query: 308 FLYLMKASGIQIQESLINDLRIACS 332
M + G++ + ACS
Sbjct: 475 LFEKMVSCGMKPNSVTFIAVLTACS 499
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 99/338 (29%), Positives = 164/338 (48%), Gaps = 13/338 (3%)
Query: 1 MDNLCLPITTDMYTCLIKEC-TFQKDSAGAFELLNHIRKRVNIK-PTLLFLNRLLLMHVS 58
MD + +++ Y CL + C + S G L H R R+ I+ P++L N +L M+
Sbjct: 74 MDKAGVSVSSYSYQCLFEACRELRSLSHGR---LLHDRMRMGIENPSVLLQNCVLQMYCE 130
Query: 59 CGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAW 118
C L+ A +LFDEM + S MI Y + + + LF+ M+ P+
Sbjct: 131 CRSLEDADKLFDEMSELNAVSRTTMISAYAEQGILDKAVGLFSGMLASGDKP-----PSS 185
Query: 119 IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL 178
+ +LK+ V ++ G+Q+H + + G N S+ ++N Y K L A VF Q+
Sbjct: 186 MYTTLLKSLVNPRALDFGRQIHAHVIRAGLCSNTSIETGIVNMYVKCGWLVGAKRVFDQM 245
Query: 179 KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCG 238
V T +V + G F ++ E ++ +S+ FS VLKAC + ++ N G
Sbjct: 246 AVKKPVACTGLMVGYTQAGRARDALKLFVDLVTEGVEWDSFVFSVVLKACASL-EELNLG 304
Query: 239 RQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIR 298
+Q+HA + K+GLES+ V LVD Y KC A R F+ I + ++ SW+A++ GY +
Sbjct: 305 KQIHACVAKLGLESEVSVGTPLVDFYIKCSSFESACRAFQEIREPNDV-SWSAIISGYCQ 363
Query: 299 NGLYVEATKFLYLMKASGIQIQESLI-NDLRIACSSIS 335
+ EA K +++ I S + ACS ++
Sbjct: 364 MSQFEEAVKTFKSLRSKNASILNSFTYTSIFQACSVLA 401
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 115/250 (46%), Gaps = 16/250 (6%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ ++ C ++A + F E+ + SW+ +I GY ++ ++E + F + +
Sbjct: 326 LVDFYIKCSSFESACRAFQEIREPNDVSWSAIISGYCQMSQFEEAVKTFKSLRSKNAS-- 383
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFK---LGSSRNISLTGSLINFYGKFRCL 168
+ ++ + +AC + +G QVH K +GS S +LI Y K CL
Sbjct: 384 --ILNSFTYTSIFQACSVLADCNIGGQVHADAIKRSLIGSQYGES---ALITMYSKCGCL 438
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+DA+ VF + + V WTA I + G+ + F++M +K NS TF +VL AC
Sbjct: 439 DDANEVFESMDNPDIVAWTAFISGHAYYGNASEALRLFEKMVSCGMKPNSVTFIAVLTAC 498
Query: 229 ---GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
G V+ +C M + D Y C ++D+Y + LL +A + + + + +
Sbjct: 499 SHAGLVEQGKHCLDTM-LRKYNVAPTIDHY-DC-MIDIYARSGLLDEALKFMKNMPFEPD 555
Query: 286 IASWNAMLVG 295
SW L G
Sbjct: 556 AMSWKCFLSG 565
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 71/139 (51%), Gaps = 4/139 (2%)
Query: 190 IVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIG 249
+V+ + ++ F +EM + + +SY++ + +AC + + GR +H + +++G
Sbjct: 55 LVSLSKHRKLNEAFEFLQEMDKAGVSVSSYSYQCLFEACRELRSLSH-GRLLH-DRMRMG 112
Query: 250 LESDEY-VQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKF 308
+E+ +Q ++ MY +CR L DA+++F+ + + N S M+ Y G+ +A
Sbjct: 113 IENPSVLLQNCVLQMYCECRSLEDADKLFDEM-SELNAVSRTTMISAYAEQGILDKAVGL 171
Query: 309 LYLMKASGIQIQESLINDL 327
M ASG + S+ L
Sbjct: 172 FSGMLASGDKPPSSMYTTL 190
>gi|222612904|gb|EEE51036.1| hypothetical protein OsJ_31684 [Oryza sativa Japonica Group]
Length = 637
Score = 140 bits (354), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 93/332 (28%), Positives = 154/332 (46%), Gaps = 8/332 (2%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCG 60
+D L T +Y LI C + A + H+ ++ N L+ ++ CG
Sbjct: 55 VDARELAATPRLYHSLITACARYRSLDDARAIHAHLAGS-QFAGSVFLDNSLIHLYCKCG 113
Query: 61 QLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWII 120
+ AR++FD MP RD SW +I GY E + L M++ + F
Sbjct: 114 AVADARRVFDGMPARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTF----- 168
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
+LKA + + +G+Q+H L K ++ + +L++ Y + ++ A VF QL+
Sbjct: 169 ASLLKAAGASASSGIGEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLES 228
Query: 181 HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQ 240
N V W A I R+G F EM R + +T+SSV A G+ G+
Sbjct: 229 KNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQ-GKW 287
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
+HA+++K G +V ++DMY K + DA +VF+ VDKK++ +WN+ML + + G
Sbjct: 288 VHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDR-VDKKDVVTWNSMLTAFAQYG 346
Query: 301 LYVEATKFLYLMKASGIQIQESLINDLRIACS 332
L EA M+ G+ + + + ACS
Sbjct: 347 LGREAVTHFEEMRKCGVHLNQITFLSILTACS 378
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 69/148 (46%), Gaps = 9/148 (6%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N +L M+ G + AR++FD + +D +W M+ + +E +T F EM RK G
Sbjct: 305 NTILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEM--RKCG 362
Query: 110 -HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
H+ + + +L AC ++ GKQ ++ + I ++++ G+ L
Sbjct: 363 VHLNQI----TFLSILTACSHGGLVKEGKQYFDMMKEYNLEPEIDHYVTVVDLLGRAGLL 418
Query: 169 EDA-DFVFSQLKRHNTVVWTAKIVNNCR 195
DA F+F + VW A ++ +CR
Sbjct: 419 NDALVFIFKMPMKPTAAVWGA-LLGSCR 445
>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 833
Score = 140 bits (354), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 85/285 (29%), Positives = 138/285 (48%), Gaps = 7/285 (2%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+V G +D ARQ+FD + +RD +++ VM+ GY D+++ LF M +
Sbjct: 199 LVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPN 258
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+ F + +L C + GK VH G +I + SLI Y +E A
Sbjct: 259 KISF-----LSILDGCWTPEALAWGKAVHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGA 313
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
VF +K + V WT I G+ F F M E I+ + T+ ++ AC +
Sbjct: 314 RRVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNAC-AI 372
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
+ N R++H+ + G +D V LV MY KC ++DA +VF+ + ++++ SW+A
Sbjct: 373 SANLNHAREIHSQVDIAGFGTDLLVSTALVHMYAKCGAIKDARQVFDAM-PRRDVVSWSA 431
Query: 292 MLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
M+ Y+ NG EA + +LMK S I+ +L AC + A
Sbjct: 432 MIGAYVENGYGTEAFETFHLMKRSNIEPDGVTYINLLNACGHLGA 476
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 90/333 (27%), Positives = 152/333 (45%), Gaps = 15/333 (4%)
Query: 8 ITTDMYTCLIKECTFQKDSAGAFELLNHI---RKRVNIKPTLLFLNRLLLMHVSCGQLDT 64
I + Y L + CT +D+A ++ +HI +++NI LN L+ ++ CG +
Sbjct: 55 IDSRTYVKLFQRCTELRDAALGKQVRDHIIQGGRQLNIYE----LNTLIKLYSICGNVTE 110
Query: 65 ARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVL 124
ARQ+FD + + +W +I GY V +E LF +M+ ++ F + VL
Sbjct: 111 ARQIFDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITF-----LSVL 165
Query: 125 KACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTV 184
AC + GK+VH + G + + +L++ Y K ++DA VF L +
Sbjct: 166 DACSSPAGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVS 225
Query: 185 VWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHAN 244
+ + + G + + F F M + +K N +F S+L C + G+ +HA
Sbjct: 226 TFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGC-WTPEALAWGKAVHAQ 284
Query: 245 IVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVE 304
+ GL D V L+ MY C + A RVF+ + +++ SW M+ GY NG +
Sbjct: 285 CMNAGLVDDIRVATSLIRMYTTCGSIEGARRVFDNM-KVRDVVSWTVMIEGYAENGNIED 343
Query: 305 ATKFLYLMKASGIQIQESLINDLRIACSSISAS 337
A M+ GIQ + AC +ISA+
Sbjct: 344 AFGLFATMQEEGIQPDRITYMHIMNAC-AISAN 375
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 75/263 (28%), Positives = 135/263 (51%), Gaps = 16/263 (6%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ +CG ++ AR++FD M +RD SW VMI GY + + ++ LFA M +
Sbjct: 300 LIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQEEG---- 355
Query: 112 LLVFPAWII-VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
+ P I + ++ AC + N+ +++H + G ++ ++ +L++ Y K ++D
Sbjct: 356 --IQPDRITYMHIMNACAISANLNHAREIHSQVDIAGFGTDLLVSTALVHMYAKCGAIKD 413
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG- 229
A VF + R + V W+A I G+ + F F M R I+ + T+ ++L ACG
Sbjct: 414 ARQVFDAMPRRDVVSWSAMIGAYVENGYGTEAFETFHLMKRSNIEPDGVTYINLLNACGH 473
Query: 230 -GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
G D G +++ +K L S + L+ M K + A +F+ +V ++++ +
Sbjct: 474 LGALD---VGMEIYTQAIKADLVSHVPLGNALIIMNAKHGSVERARYIFDTMV-RRDVIT 529
Query: 289 WNAMLVGYIRNGLYVEATKFLYL 311
WNAM+ GY L+ A + LYL
Sbjct: 530 WNAMIGGY---SLHGNAREALYL 549
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 78/273 (28%), Positives = 129/273 (47%), Gaps = 21/273 (7%)
Query: 33 LNHIRK---RVNIK---PTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVG 86
LNH R+ +V+I LL L+ M+ CG + ARQ+FD MP RD SW+ MI
Sbjct: 376 LNHAREIHSQVDIAGFGTDLLVSTALVHMYAKCGAIKDARQVFDAMPRRDVVSWSAMIGA 435
Query: 87 YVDVADYQECITLFAEMMKRKKGHMLLVFPAWII-VCVLKACVCTMNMELGKQVHGLLFK 145
YV+ E F +MKR + P + + +L AC +++G +++ K
Sbjct: 436 YVENGYGTEAFETF-HLMKRSN-----IEPDGVTYINLLNACGHLGALDVGMEIYTQAIK 489
Query: 146 LGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFND 205
++ L +LI K +E A ++F + R + + W A I G+ +
Sbjct: 490 ADLVSHVPLGNALIIMNAKHGSVERARYIFDTMVRRDVITWNAMIGGYSLHGNAREALYL 549
Query: 206 FKEMGRERIKKNSYTFSSVLKAC---GGVDDDGNCGRQMHANIVK-IGLESDEYVQCGLV 261
F M +ER + NS TF VL AC G VD+ GR+ +++ G+ + +V
Sbjct: 550 FDRMLKERFRPNSVTFVGVLSACSRAGFVDE----GRRFFTYLLEGRGIVPTVKLYGCMV 605
Query: 262 DMYGKCRLLRDAERVFELIVDKKNIASWNAMLV 294
D+ G+ L +AE + + + K + W+++LV
Sbjct: 606 DLLGRAGELDEAELLIKSMPVKPTSSIWSSLLV 638
>gi|357475145|ref|XP_003607858.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355508913|gb|AES90055.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 708
Score = 140 bits (354), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 90/291 (30%), Positives = 148/291 (50%), Gaps = 10/291 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ ++ G+L AR++FD M R+ +W +I GY+ E LF +K
Sbjct: 189 NNLICSYLRLGKLAQARKVFDGMSRRNTVTWTAIIDGYLKYDLDDEAFKLFHGSIKHG-- 246
Query: 110 HMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
V P + + VC + C +++ LGKQ+H + K + RN+ + +++NFY K +
Sbjct: 247 ----VQPNSKMFVCFMNLCCKRVDLALGKQIHARILK-SNWRNLIVDSAVVNFYSKCGKI 301
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
A F ++ + + V WT I + G H+ +M + N YT + LKAC
Sbjct: 302 SSAFRTFDRMAKRDVVCWTTIITACSQHGLGHEALLLLSQMLVDGFFPNEYTICAALKAC 361
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
G + CG Q+H IVK +SD ++ L+DMY KC + +++VF+ + +N A+
Sbjct: 362 GE-NKAFKCGTQLHGAIVKKICKSDVFIGTSLIDMYAKCGEIVSSKKVFDRM-KVRNTAT 419
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKI 339
W +++ GY RNG EA F LMK + + +S + + AC +I AS I
Sbjct: 420 WTSIISGYARNGFGEEALNFFRLMKRKKVYVNKSTLVCVMTACGTIKASLI 470
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 91/324 (28%), Positives = 156/324 (48%), Gaps = 22/324 (6%)
Query: 17 IKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRD 76
+K C K +L I K++ K + L+ M+ CG++ +++++FD M +R+
Sbjct: 358 LKACGENKAFKCGTQLHGAIVKKI-CKSDVFIGTSLIDMYAKCGEIVSSKKVFDRMKVRN 416
Query: 77 FNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELG 136
+W +I GY +E + F +MKRKK ++ +VCV+ AC +G
Sbjct: 417 TATWTSIISGYARNGFGEEALNFF-RLMKRKKVYV----NKSTLVCVMTACGTIKASLIG 471
Query: 137 KQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCRE 196
++VH K N+ + +L+ FY + + A V + + V WTA I R
Sbjct: 472 REVHAQKIKSVILTNMYIETTLVWFYCRCKDYSHAFNVLKYIPLRDVVSWTAIISGCARL 531
Query: 197 GHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYV 256
G + +EM E + NSYT+SS LKAC ++ S+ +V
Sbjct: 532 GLETEALEFLREMMEEGVLPNSYTYSSALKACAKLETPA---------------LSNVFV 576
Query: 257 QCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASG 316
L+ MY KC + DA +VF+ + ++N+ SW AM++GY RNG +A + +Y M+A G
Sbjct: 577 NSALIYMYAKCGYIADAFQVFDNM-PERNLVSWKAMILGYARNGHCRKALQLMYRMRAEG 635
Query: 317 IQIQESLINDLRIACSSISASKIN 340
+ + ++ + AC I + I+
Sbjct: 636 FVVDDYILTTVLTACGGIDSGDID 659
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 86/332 (25%), Positives = 150/332 (45%), Gaps = 11/332 (3%)
Query: 10 TDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLF 69
+ M+ C + C + D A ++ H R + L+ + ++ + CG++ +A + F
Sbjct: 251 SKMFVCFMNLCCKRVDLALGKQI--HARILKSNWRNLIVDSAVVNFYSKCGKISSAFRTF 308
Query: 70 DEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCV-LKACV 128
D M RD W +I E + L ++M+ FP +C LKAC
Sbjct: 309 DRMAKRDVVCWTTIITACSQHGLGHEALLLLSQMLVDG------FFPNEYTICAALKACG 362
Query: 129 CTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTA 188
+ G Q+HG + K ++ + SLI+ Y K + + VF ++K NT WT+
Sbjct: 363 ENKAFKCGTQLHGAIVKKICKSDVFIGTSLIDMYAKCGEIVSSKKVFDRMKVRNTATWTS 422
Query: 189 KIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKI 248
I R G + N F+ M R+++ N T V+ ACG + GR++HA +K
Sbjct: 423 IISGYARNGFGEEALNFFRLMKRKKVYVNKSTLVCVMTACGTI-KASLIGREVHAQKIKS 481
Query: 249 GLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKF 308
+ ++ Y++ LV Y +C+ A V + I +++ SW A++ G R GL EA +F
Sbjct: 482 VILTNMYIETTLVWFYCRCKDYSHAFNVLKYI-PLRDVVSWTAIISGCARLGLETEALEF 540
Query: 309 LYLMKASGIQIQESLINDLRIACSSISASKIN 340
L M G+ + AC+ + ++
Sbjct: 541 LREMMEEGVLPNSYTYSSALKACAKLETPALS 572
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 87/220 (39%), Gaps = 24/220 (10%)
Query: 15 CLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLL-MHVSCGQLDTARQLFDEMP 73
C++ C K S E+ H +K ++ T +++ L+ + C A + +P
Sbjct: 457 CVMTACGTIKASLIGREV--HAQKIKSVILTNMYIETTLVWFYCRCKDYSHAFNVLKYIP 514
Query: 74 LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTMN 132
LRD SW +I G + E + EMM+ V P ++ LKAC
Sbjct: 515 LRDVVSWTAIISGCARLGLETEALEFLREMMEEG------VLPNSYTYSSALKACAKLET 568
Query: 133 MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192
L N+ + +LI Y K + DA VF + N V W A I+
Sbjct: 569 PALS--------------NVFVNSALIYMYAKCGYIADAFQVFDNMPERNLVSWKAMILG 614
Query: 193 NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVD 232
R GH + M E + Y ++VL ACGG+D
Sbjct: 615 YARNGHCRKALQLMYRMRAEGFVVDDYILTTVLTACGGID 654
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 86/205 (41%), Gaps = 4/205 (1%)
Query: 134 ELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNN 193
E+G+ VH + K + + +LI Y + L A VF + R NTV WTA I
Sbjct: 168 EVGR-VHTIALKCFRGSSTYVDNNLICSYLRLGKLAQARKVFDGMSRRNTVTWTAIIDGY 226
Query: 194 CREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESD 253
+ + F F + ++ NS F + C D G+Q+HA I+K +
Sbjct: 227 LKYDLDDEAFKLFHGSIKHGVQPNSKMFVCFMNLCCKRVDLA-LGKQIHARILKSNWR-N 284
Query: 254 EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMK 313
V +V+ Y KC + A R F+ + K+++ W ++ ++GL EA L M
Sbjct: 285 LIVDSAVVNFYSKCGKISSAFRTFDRMA-KRDVVCWTTIITACSQHGLGHEALLLLSQML 343
Query: 314 ASGIQIQESLINDLRIACSSISASK 338
G E I AC A K
Sbjct: 344 VDGFFPNEYTICAALKACGENKAFK 368
>gi|224106429|ref|XP_002314162.1| predicted protein [Populus trichocarpa]
gi|222850570|gb|EEE88117.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 140 bits (354), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 86/266 (32%), Positives = 141/266 (53%), Gaps = 8/266 (3%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+ CG++ +AR LFD+MP R +W +I GY+ V + I LF +M+K +
Sbjct: 113 MYAKCGEISSARVLFDQMPQRTVVTWNSLIYGYLAVNCPKIAIELFIKMLKAA-----IN 167
Query: 115 FPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFV 174
A+ + L C E+G QVHGL+ K G N+ + SL++ Y K ++D+ V
Sbjct: 168 VSAFSVSSCLAGCSQLEAREVGTQVHGLILKTGLGYNVVVGTSLVDMYSKCGDVDDSRLV 227
Query: 175 FSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDD 234
F + N + WT+ + + + KEM + ++ N T++S+L + G D
Sbjct: 228 FDHMVNRNVITWTSMVTGYSQIEKPDEAMALVKEMVLQDLRPNCVTYNSLLSSFSGPDCL 287
Query: 235 GNCGRQMHANIVKIGLESDEYVQCGLVDMYGKC-RLLRDAERVFELIVDKKNIASWNAML 293
C Q+H I+++GLES+ Y+ LV +Y KC L D ++V +++ NIA WNA++
Sbjct: 288 SYC-LQVHCCIIQLGLESNVYIAATLVTVYSKCSSSLEDFKKVCSVVMTCDNIA-WNAVI 345
Query: 294 VGYIRNGLYVEATKFLYLMKASGIQI 319
GY + G + EA + + MK +GI I
Sbjct: 346 AGYSKLGRHEEALRCFHEMKQAGIDI 371
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 81/284 (28%), Positives = 133/284 (46%), Gaps = 8/284 (2%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ CG +D +R +FD M R+ +W M+ GY + E + L EM+ +
Sbjct: 211 LVDMYSKCGDVDDSRLVFDHMVNRNVITWTSMVTGYSQIEKPDEAMALVKEMVLQDLRPN 270
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK-FRCLED 170
+ + + + C + QVH + +LG N+ + +L+ Y K LED
Sbjct: 271 CVTYNSLLSSFSGPDC-----LSYCLQVHCCIIQLGLESNVYIAATLVTVYSKCSSSLED 325
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
V S + + + W A I + G + F EM + I +SYT +SV+ A G
Sbjct: 326 FKKVCSVVMTCDNIAWNAVIAGYSKLGRHEEALRCFHEMKQAGIDIDSYTLTSVVGAIGN 385
Query: 231 VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWN 290
G+ MHA I + G S VQ GLV MY +C + D++RVF +++ ++ SWN
Sbjct: 386 SSFLEE-GKAMHALIHRTGYISHLNVQNGLVSMYARCGAIGDSKRVF-WFMEEHDVISWN 443
Query: 291 AMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
A+L + +G EA + M+ + I+ S + ACS +
Sbjct: 444 ALLTAFAHHGYGREAVELFEQMRKTEIKPNSSTFLAVLCACSHV 487
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 100/213 (46%), Gaps = 20/213 (9%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
++ C + + LG Q H + KLG N+ + ++++ Y K + A +F Q+ +
Sbjct: 75 IVSFCAKSGSFHLGIQAHSTILKLGFISNVYICSAVVDMYAKCGEISSARVLFDQMPQRT 134
Query: 183 TVVWTAKIVN----NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCG 238
V W + I NC + F +M + I ++++ SS L C ++ G
Sbjct: 135 VVTWNSLIYGYLAVNCPK----IAIELFIKMLKAAINVSAFSVSSCLAGCSQLEAR-EVG 189
Query: 239 RQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIR 298
Q+H I+K GL + V LVDMY KC + D+ VF+ +V+ +N+ +W +M+ GY +
Sbjct: 190 TQVHGLILKTGLGYNVVVGTSLVDMYSKCGDVDDSRLVFDHMVN-RNVITWTSMVTGYSQ 248
Query: 299 NGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
EA ++E ++ DLR C
Sbjct: 249 IEKPDEAMAL----------VKEMVLQDLRPNC 271
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 66/133 (49%), Gaps = 4/133 (3%)
Query: 208 EMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKC 267
E R N Y + ++ C + G Q H+ I+K+G S+ Y+ +VDMY KC
Sbjct: 59 EFTRHGSLSNPYFLNKIVSFCAK-SGSFHLGIQAHSTILKLGFISNVYICSAVVDMYAKC 117
Query: 268 RLLRDAERVFELIVDKKNIASWNAMLVGYIR-NGLYVEATKFLYLMKASGIQIQESLIND 326
+ A +F+ + ++ + +WN+++ GY+ N + F+ ++KA+ I + ++
Sbjct: 118 GEISSARVLFDQM-PQRTVVTWNSLIYGYLAVNCPKIAIELFIKMLKAA-INVSAFSVSS 175
Query: 327 LRIACSSISASKI 339
CS + A ++
Sbjct: 176 CLAGCSQLEAREV 188
>gi|255570402|ref|XP_002526160.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534537|gb|EEF36236.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 762
Score = 140 bits (353), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 96/309 (31%), Positives = 152/309 (49%), Gaps = 10/309 (3%)
Query: 29 AFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYV 88
A E+ ++K V +P + ++ +V+ G+LD A LF +MP + +W VMI G+
Sbjct: 103 ALEVFEQMKK-VGREPDQVAFVTVINAYVALGRLDDALGLFFQMPNPNVVAWNVMISGHA 161
Query: 89 DVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGS 148
+ I LF M RK G + + VL A +++ G VH K G
Sbjct: 162 QRGHETKSIELFCNM--RKAG---IKSTRSTLGSVLSAIASLTDLDFGLLVHAEAIKQGL 216
Query: 149 SRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKE 208
N+ + SLIN Y K + LE A VF + N V+W A + + G+ H+V
Sbjct: 217 DSNVYVGSSLINMYAKCKELEAAKKVFDPIDERNVVLWNAMVGGYAQNGYAHEVIELLSN 276
Query: 209 MGRERIKKNSYTFSSVLKACGGVDD-DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKC 267
M + +T++S+L AC ++ +G GRQ+H+ I+K S+ +V L+DMY K
Sbjct: 277 MKSCGFHPDEFTYTSILSACACLEHVEG--GRQLHSIIIKNKFASNLFVGNALIDMYAKS 334
Query: 268 RLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDL 327
L DA + FEL+ + N+ SWNA++VGY++ VEA M GI E + +
Sbjct: 335 GFLEDARKQFELMKSRDNV-SWNAIIVGYVQEEDEVEAFLMFQKMHLVGILPDEVSLASI 393
Query: 328 RIACSSISA 336
AC+++
Sbjct: 394 LSACANVEG 402
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 88/300 (29%), Positives = 146/300 (48%), Gaps = 17/300 (5%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
+ ++ +L + L+ M+ CG + +A+++ MP S +I GY V + +E I
Sbjct: 415 KSGLETSLYAGSSLIDMYAKCGDVGSAQKILKSMPEHSVVSINALIAGYAPV-NLEEAII 473
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTG-S 157
LF +M + F + +L C + LG Q+H L+ K G + G S
Sbjct: 474 LFEKMQAEGLNPSEITFAS-----LLDGCGGPEQLILGIQIHCLILKRGLQYDDDFLGVS 528
Query: 158 LINFYGKFRCLEDADFVFSQLKR-HNTVVWTAKIV----NNCREGHFHQVFNDFKEMGRE 212
L+ Y K DA +FS+ +T++WTA I NNC + + ++EM
Sbjct: 529 LLGMYVKSLRKTDARILFSEFSNPKSTILWTAMISGLAQNNCSD----EALQFYQEMRSC 584
Query: 213 RIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRD 272
+ TF SVL+AC + G+ GR++H+ I + GL+ DE L+DMY KC +R
Sbjct: 585 NALPDQATFVSVLRACAVLSSIGD-GREIHSLIFRTGLDLDESTCSALIDMYAKCGDVRS 643
Query: 273 AERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+ +VFE + K ++ SWN+M+VG+ +NG A + MK + + + + ACS
Sbjct: 644 SMQVFEDMHSKNDVISWNSMIVGFAKNGYAENALRIFNEMKQAHVIPDDVTFLGVLTACS 703
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 86/303 (28%), Positives = 142/303 (46%), Gaps = 9/303 (2%)
Query: 30 FELLNHIRK-RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYV 88
F LL H + + + + L+ M+ C +L+ A+++FD + R+ W M+ GY
Sbjct: 203 FGLLVHAEAIKQGLDSNVYVGSSLINMYAKCKELEAAKKVFDPIDERNVVLWNAMVGGYA 262
Query: 89 DVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGS 148
E I L + M K H + +L AC C ++E G+Q+H ++ K
Sbjct: 263 QNGYAHEVIELLSNM-KSCGFHP----DEFTYTSILSACACLEHVEGGRQLHSIIIKNKF 317
Query: 149 SRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKE 208
+ N+ + +LI+ Y K LEDA F +K + V W A IV +E + F F++
Sbjct: 318 ASNLFVGNALIDMYAKSGFLEDARKQFELMKSRDNVSWNAIIVGYVQEEDEVEAFLMFQK 377
Query: 209 MGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCR 268
M I + + +S+L AC V+ G+ +H VK GLE+ Y L+DMY KC
Sbjct: 378 MHLVGILPDEVSLASILSACANVEGFEQ-GKPIHCLSVKSGLETSLYAGSSLIDMYAKCG 436
Query: 269 LLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLR 328
+ A+++ + + + ++ S NA++ GY L EA M+A G+ E L
Sbjct: 437 DVGSAQKILKSM-PEHSVVSINALIAGYAPVNLE-EAIILFEKMQAEGLNPSEITFASLL 494
Query: 329 IAC 331
C
Sbjct: 495 DGC 497
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 93/327 (28%), Positives = 152/327 (46%), Gaps = 13/327 (3%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
YT ++ C + G +L + I K L N L+ M+ G L+ AR+ F+ M
Sbjct: 289 YTSILSACACLEHVEGGRQLHSIIIKN-KFASNLFVGNALIDMYAKSGFLEDARKQFELM 347
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI-IVCVLKACVCTM 131
RD SW +IVGYV D E +F +M H++ + P + + +L AC
Sbjct: 348 KSRDNVSWNAIIVGYVQEEDEVEAFLMFQKM------HLVGILPDEVSLASILSACANVE 401
Query: 132 NMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIV 191
E GK +H L K G ++ SLI+ Y K + A + + H+ V A I
Sbjct: 402 GFEQGKPIHCLSVKSGLETSLYAGSSLIDMYAKCGDVGSAQKILKSMPEHSVVSINALIA 461
Query: 192 NNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLE 251
+ + F++M E + + TF+S+L CGG + G Q+H I+K GL+
Sbjct: 462 GYAPV-NLEEAIILFEKMQAEGLNPSEITFASLLDGCGG-PEQLILGIQIHCLILKRGLQ 519
Query: 252 -SDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLY 310
D+++ L+ MY K DA +F + K+ W AM+ G +N EA +F
Sbjct: 520 YDDDFLGVSLLGMYVKSLRKTDARILFSEFSNPKSTILWTAMISGLAQNNCSDEALQFYQ 579
Query: 311 LMKA-SGIQIQESLINDLRIACSSISA 336
M++ + + Q + ++ LR AC+ +S+
Sbjct: 580 EMRSCNALPDQATFVSVLR-ACAVLSS 605
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 71/275 (25%), Positives = 109/275 (39%), Gaps = 66/275 (24%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
VL C ++E G+ VH + KLG + G+LI+ Y K + D VF +
Sbjct: 24 VLSGCARLDSVEFGRLVHCNVVKLGFEFSSFCVGALIDMYAKNNRMSDCRRVFDGGVSLD 83
Query: 183 TVVWTAKIVNNCREG---HFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDD------ 233
TV WT+ I + G +VF K++GRE + T + A G +DD
Sbjct: 84 TVSWTSLIAGYVKAGLPEEALEVFEQMKKVGREPDQVAFVTVINAYVALGRLDDALGLFF 143
Query: 234 --------------DGNCGR-------QMHANIVKIGLESDE------------------ 254
G+ R ++ N+ K G++S
Sbjct: 144 QMPNPNVVAWNVMISGHAQRGHETKSIELFCNMRKAGIKSTRSTLGSVLSAIASLTDLDF 203
Query: 255 -----------------YVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYI 297
YV L++MY KC+ L A++VF+ I D++N+ WNAM+ GY
Sbjct: 204 GLLVHAEAIKQGLDSNVYVGSSLINMYAKCKELEAAKKVFDPI-DERNVVLWNAMVGGYA 262
Query: 298 RNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+NG E + L MK+ G E + AC+
Sbjct: 263 QNGYAHEVIELLSNMKSCGFHPDEFTYTSILSACA 297
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 53/101 (52%), Gaps = 2/101 (1%)
Query: 216 KNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAER 275
N +TF+ VL C +D GR +H N+VK+G E + L+DMY K + D R
Sbjct: 16 PNEFTFAIVLSGCARLDSV-EFGRLVHCNVVKLGFEFSSFCVGALIDMYAKNNRMSDCRR 74
Query: 276 VFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASG 316
VF+ V + SW +++ GY++ GL EA + MK G
Sbjct: 75 VFDGGVSLDTV-SWTSLIAGYVKAGLPEEALEVFEQMKKVG 114
>gi|218190710|gb|EEC73137.1| hypothetical protein OsI_07160 [Oryza sativa Indica Group]
Length = 603
Score = 140 bits (353), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 98/293 (33%), Positives = 137/293 (46%), Gaps = 7/293 (2%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
+ + L LN +L M V LD AR LFD + + +W + GY+ DY E
Sbjct: 182 KSGLDAGLPVLNSVLTMLVRGSHLDAARLLFDGICNKSVVTWTALASGYLLRGDYLEVFD 241
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
LF M R G + + ++V ++ A V N+ + K VH L+ KLG L SL
Sbjct: 242 LFNRM--RGVGQNV---DSVVLVNLISAAVLFGNLSVAKGVHALIIKLGFECEEDLAASL 296
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
IN Y K LE A VF + N VVWT+ I GH ++ F M I+ N
Sbjct: 297 INLYAKCGDLESAREVFDAVHMANVVVWTSMISGYVEGGHLNEALVMFDSMVCANIEPNE 356
Query: 219 YTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE 278
T SSVL AC + N G+++ + GL S+ V GL+DMY K + A ++FE
Sbjct: 357 ATLSSVLSACAKL-GSANLGKKVEEQAIATGLHSEPRVATGLIDMYSKFGSINLARKIFE 415
Query: 279 LIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
+ + ++IA W+AM+ GY NG EA MK G Q + AC
Sbjct: 416 GVTN-RDIAVWSAMINGYACNGEGSEALVLFKEMKNKGFQPDGIAFTHVLTAC 467
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 79/291 (27%), Positives = 138/291 (47%), Gaps = 10/291 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL M+ CG+L AR+LFDEMP SW M+ Y + +E + +F M R+ G
Sbjct: 93 LLDMYAKCGRLPDARRLFDEMPRPTLVSWNCMVAAYGRSSQVEESVAVFNAM--RRAG-- 148
Query: 112 LLVFPA-WIIVCVLKACVCTMNME-LGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
V P+ +V VL CV +++ G V+G K G + + S++ + L+
Sbjct: 149 --VRPSEGTLVGVLSGCVDSVSASNPGMCVYGFSVKSGLDAGLPVLNSVLTMLVRGSHLD 206
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A +F + + V WTA G + +VF+ F M +S +++ A
Sbjct: 207 AARLLFDGICNKSVVTWTALASGYLLRGDYLEVFDLFNRMRGVGQNVDSVVLVNLISA-A 265
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ + + + +HA I+K+G E +E + L+++Y KC L A VF+ V N+ W
Sbjct: 266 VLFGNLSVAKGVHALIIKLGFECEEDLAASLINLYAKCGDLESAREVFD-AVHMANVVVW 324
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKIN 340
+M+ GY+ G EA M + I+ E+ ++ + AC+ + ++ +
Sbjct: 325 TSMISGYVEGGHLNEALVMFDSMVCANIEPNEATLSSVLSACAKLGSANLG 375
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 73/171 (42%), Gaps = 1/171 (0%)
Query: 157 SLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKK 216
SL++ Y K L DA +F ++ R V W + R + F M R ++
Sbjct: 92 SLLDMYAKCGRLPDARRLFDEMPRPTLVSWNCMVAAYGRSSQVEESVAVFNAMRRAGVRP 151
Query: 217 NSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERV 276
+ T VL C N G ++ VK GL++ V ++ M + L A +
Sbjct: 152 SEGTLVGVLSGCVDSVSASNPGMCVYGFSVKSGLDAGLPVLNSVLTMLVRGSHLDAARLL 211
Query: 277 FELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDL 327
F+ I + K++ +W A+ GY+ G Y+E M+ G + ++ +L
Sbjct: 212 FDGICN-KSVVTWTALASGYLLRGDYLEVFDLFNRMRGVGQNVDSVVLVNL 261
>gi|225436683|ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Vitis vinifera]
Length = 866
Score = 140 bits (353), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 85/272 (31%), Positives = 147/272 (54%), Gaps = 11/272 (4%)
Query: 65 ARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVL 124
++QLFDE P + + ++ + +E + LF + R+ G + CVL
Sbjct: 45 SQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGL--RRSGSPT---DGSSLSCVL 99
Query: 125 KACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTV 184
K C C + +GKQVH K G ++S+ SL++ Y K +ED + VF +++ N V
Sbjct: 100 KVCGCLFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVV 159
Query: 185 VWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC--GRQMH 242
WT+ + + G Q F +M E IK N +TF++VL GG+ DG G Q+H
Sbjct: 160 SWTSLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVL---GGLAADGAVEKGVQVH 216
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
++K GL+S +V +V+MY K ++ DA+ VF+ + + +N SWN+M+ G++ NGL
Sbjct: 217 TMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSM-ENRNAVSWNSMIAGFVTNGLD 275
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIACSSI 334
+EA + Y M+ G+++ +++ + C++I
Sbjct: 276 LEAFELFYRMRLEGVKLTQTIFATVIKLCANI 307
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 90/300 (30%), Positives = 143/300 (47%), Gaps = 12/300 (4%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
+ + T+ N ++ M+ + A+ +FD M R+ SW MI G+V E
Sbjct: 221 KSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFE 280
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
LF M R +G L I V+K C M KQ+H + K GS ++++ +L
Sbjct: 281 LFYRM--RLEGVKLT---QTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTAL 335
Query: 159 INFYGKFRCLEDADFVFSQLKR-HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKN 217
+ Y K ++DA +F + N V WTA I + G + N F +M RE ++ N
Sbjct: 336 MVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPN 395
Query: 218 SYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVF 277
+T+S++L A V Q+HA +VK E+ V L D Y K +A ++F
Sbjct: 396 HFTYSTILTANAAVSPS-----QIHALVVKTNYENSPSVGTALSDSYSKIGDANEAAKIF 450
Query: 278 ELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISAS 337
ELI D+K+I +W+AML GY + G A K + G++ E + + AC++ +AS
Sbjct: 451 ELI-DEKDIVAWSAMLSGYAQMGDIEGAVKIFLQLAKEGVEPNEFTFSSVLNACAAPTAS 509
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 74/289 (25%), Positives = 138/289 (47%), Gaps = 6/289 (2%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M++ ++ ++FDEM +++ SW ++ GY ++ + LF++M
Sbjct: 133 LVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQMQLEGIKPN 192
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
F A VL +E G QVH ++ K G I + S++N Y K + DA
Sbjct: 193 PFTFAA-----VLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDA 247
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
VF ++ N V W + I G + F F M E +K F++V+K C +
Sbjct: 248 KAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANI 307
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
+ + +Q+H ++K G + D ++ L+ Y KC + DA ++F ++ +N+ SW A
Sbjct: 308 KE-MSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTA 366
Query: 292 MLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKIN 340
++ GY++NG A M+ G++ + + A +++S S+I+
Sbjct: 367 IISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTANAAVSPSQIH 415
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 83/319 (26%), Positives = 148/319 (46%), Gaps = 24/319 (7%)
Query: 8 ITTDMYTCLIKECTFQKDSAGAFELLNHIRKR-----VNIKPTLLFLNRLLLMHVSCGQL 62
+T ++ +IK C K+ + A +L + K +NIK L+ + + C ++
Sbjct: 292 LTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALM------VAYSKCSEI 345
Query: 63 DTARQLFDEM-PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIV 121
D A +LF M +++ SW +I GYV + LF +M R++G V P
Sbjct: 346 DDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQM--RREG----VRPNHFTY 399
Query: 122 CVLKACVCTMNMELGK-QVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
+ + T N + Q+H L+ K + S+ +L + Y K +A +F +
Sbjct: 400 ----STILTANAAVSPSQIHALVVKTNYENSPSVGTALSDSYSKIGDANEAAKIFELIDE 455
Query: 181 HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQ 240
+ V W+A + + G F ++ +E ++ N +TFSSVL AC G+Q
Sbjct: 456 KDIVAWSAMLSGYAQMGDIEGAVKIFLQLAKEGVEPNEFTFSSVLNACAAPTASVEQGKQ 515
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
H+ +K G + V LV MY K + A VF+ VD +++ SWN+M+ GY ++G
Sbjct: 516 FHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQVD-RDLVSWNSMISGYAQHG 574
Query: 301 LYVEATKFLYLMKASGIQI 319
++ K M++ +++
Sbjct: 575 CGKKSLKIFEEMRSKNLEL 593
>gi|255562850|ref|XP_002522430.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538315|gb|EEF39922.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 556
Score = 140 bits (353), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 95/326 (29%), Positives = 158/326 (48%), Gaps = 18/326 (5%)
Query: 20 CTFQKDSAGAFELLNHIRKRVNIKPT----LLFLNRLLLMHVSCGQLDTARQLFDEMPLR 75
CT +D + A+ + N++ + +P+ +L +N L V G L ARQ+FDEMP R
Sbjct: 20 CTDYRDLSVAYSVPNNLSHKT--QPSNLINMLEINSKLKALVKTGCLQDARQMFDEMPHR 77
Query: 76 DFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMEL 135
D SW +I GYV+ D E +TLF++M L +I+ LK C ++N
Sbjct: 78 DEISWTTIISGYVNAIDTTEALTLFSKMWVVPG----LRMDPFILSLALKICGLSLNESY 133
Query: 136 GKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCR 195
G+ +HG K ++ + +L++ Y KF ++ +F + N V WTA I
Sbjct: 134 GESLHGYSVKSDFVDSVFVGSALVDMYMKFDKIQQGCQIFHAMPIRNVVSWTAIITGFVH 193
Query: 196 EGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC---GGVDDDGNCGRQMHANIVKIGLES 252
G+ + F +M R ++ +SYTF+ LKAC G +D GRQ+H +K LE+
Sbjct: 194 AGYSKEGLVYFSQMWRSKVVCDSYTFAIALKACANLGALDH----GRQIHCQALKRSLEA 249
Query: 253 DEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLM 312
+V L MY KC L R+FE + +N+ SW ++ Y ++G A + M
Sbjct: 250 SSFVANTLATMYNKCGKLDYGSRLFEKMT-IRNVVSWTMIITTYTQSGQEENALRAFIRM 308
Query: 313 KASGIQIQESLINDLRIACSSISASK 338
+ G+ + + C+++ ++
Sbjct: 309 QEIGVSPNDFTFAAVISGCANLGKTE 334
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 84/292 (28%), Positives = 137/292 (46%), Gaps = 7/292 (2%)
Query: 41 NIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLF 100
+++ + N L M+ CG+LD +LF++M +R+ SW ++I Y + + F
Sbjct: 246 SLEASSFVANTLATMYNKCGKLDYGSRLFEKMTIRNVVSWTMIITTYTQSGQEENALRAF 305
Query: 101 AEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLIN 160
M + F A V+ C E G+Q+HG + LG +S+ S+I
Sbjct: 306 IRMQEIGVSPNDFTFAA-----VISGCANLGKTEWGEQLHGHMLCLGLMTFLSVANSVIT 360
Query: 161 FYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYT 220
Y K L+ A VF +L R + V W+ I + G + F M RE K N T
Sbjct: 361 LYSKCGQLKSASMVFKELTRRDVVSWSTIIAGYSQGGCAEEAFEYLSRMRREGPKPNELT 420
Query: 221 FSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELI 280
+SVL CG + G+Q+HA+ + +GLE +Q L++MY KC +++A ++F+
Sbjct: 421 LASVLSVCGNMAILEQ-GKQLHAHALHVGLEQTAMIQSALINMYSKCGSIKEASKIFDE- 478
Query: 281 VDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+ +I SW AM+ GY +G EA + G++ + ACS
Sbjct: 479 AENNDIVSWTAMINGYAEHGCRQEAIDLFEKIPRIGLKPDPVTFIGVLTACS 530
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 68/284 (23%), Positives = 133/284 (46%), Gaps = 7/284 (2%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M++ ++ Q+F MP+R+ SW +I G+V +E + F++M + K
Sbjct: 156 LVDMYMKFDKIQQGCQIFHAMPIRNVVSWTAIITGFVHAGYSKEGLVYFSQMWRSK---- 211
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+V ++ LKAC ++ G+Q+H K + + +L Y K L+
Sbjct: 212 -VVCDSYTFAIALKACANLGALDHGRQIHCQALKRSLEASSFVANTLATMYNKCGKLDYG 270
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
+F ++ N V WT I + G F M + N +TF++V+ C +
Sbjct: 271 SRLFEKMTIRNVVSWTMIITTYTQSGQEENALRAFIRMQEIGVSPNDFTFAAVISGCANL 330
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
G Q+H +++ +GL + V ++ +Y KC L+ A VF+ + ++++ SW+
Sbjct: 331 GKT-EWGEQLHGHMLCLGLMTFLSVANSVITLYSKCGQLKSASMVFKELT-RRDVVSWST 388
Query: 292 MLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
++ GY + G EA ++L M+ G + E + + C +++
Sbjct: 389 IIAGYSQGGCAEEAFEYLSRMRREGPKPNELTLASVLSVCGNMA 432
Score = 45.4 bits (106), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
V ++ T + + L+ M+ CG + A ++FDE D SW MI GY + QE I
Sbjct: 446 HVGLEQTAMIQSALINMYSKCGSIKEASKIFDEAENNDIVSWTAMINGYAEHGCRQEAID 505
Query: 99 LFAEMMK 105
LF ++ +
Sbjct: 506 LFEKIPR 512
>gi|302817366|ref|XP_002990359.1| hypothetical protein SELMODRAFT_131534 [Selaginella moellendorffii]
gi|300141921|gb|EFJ08628.1| hypothetical protein SELMODRAFT_131534 [Selaginella moellendorffii]
Length = 459
Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 89/312 (28%), Positives = 152/312 (48%), Gaps = 22/312 (7%)
Query: 8 ITTDMYTCLIKECTFQKDSAGAFELLNHI----RKRVNIKPTLLFLNRLLL-MHVSCGQL 62
++ Y L+K+C +K ++ HI K PT FL LLL ++ CG L
Sbjct: 10 VSAATYASLLKQCIARKALGHGRQIHAHILAAKEKDPRAAPTAPFLGNLLLQLYARCGDL 69
Query: 63 DTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIV 121
D AR +FD + R+ SW M+ GYV + + L+ + KR++ + P A++
Sbjct: 70 DRARSIFDGLAHRNLFSWTTMMGGYVQRGRFDRALDLYHCLEKREEPSYRSIEPDAFVYT 129
Query: 122 CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH 181
L AC ++ G+ +H S R++ L ++IN Y K C+ +A VF +++
Sbjct: 130 IALAACSSLGDLASGRAIHARCHDR-SIRDVILDTAIINMYAKCGCVGEAKIVFDSMRQR 188
Query: 182 NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSS------VLKACGGVDDDG 235
+++ W A I + GH + + EM + + + TF++ +L AC ++
Sbjct: 189 DSIAWNAMIAAFAQNGHLREAILLYLEMTAQGLDPSEATFTTAFTLSILLGACASLESL- 247
Query: 236 NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA-------- 287
+ GR++HA I+ G+ESD + LV MY KC L DA RVF+ + ++
Sbjct: 248 DRGREIHATIIDRGMESDTVLLNSLVRMYSKCGSLLDAMRVFQSALQDRDRGGGGSIDAI 307
Query: 288 SWNAMLVGYIRN 299
+WNA++V R+
Sbjct: 308 TWNAIIVASARS 319
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 95/218 (43%), Gaps = 15/218 (6%)
Query: 117 AWIIVCVLKACVCTMNMELGKQVHG--LLFKLGSSRNIS----LTGSLINFYGKFRCLED 170
A +LK C+ + G+Q+H L K R L L+ Y + L+
Sbjct: 12 AATYASLLKQCIARKALGHGRQIHAHILAAKEKDPRAAPTAPFLGNLLLQLYARCGDLDR 71
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDF------KEMGRERIKKNSYTFSSV 224
A +F L N WT + + G F + + + +E I+ +++ ++
Sbjct: 72 ARSIFDGLAHRNLFSWTTMMGGYVQRGRFDRALDLYHCLEKREEPSYRSIEPDAFVYTIA 131
Query: 225 LKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
L AC + D + GR +HA + D + +++MY KC + +A+ VF+ + +
Sbjct: 132 LAACSSLGDLAS-GRAIHARCHDRSIR-DVILDTAIINMYAKCGCVGEAKIVFDSMRQRD 189
Query: 285 NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQES 322
+IA WNAM+ + +NG EA M A G+ E+
Sbjct: 190 SIA-WNAMIAAFAQNGHLREAILLYLEMTAQGLDPSEA 226
>gi|296084942|emb|CBI28351.3| unnamed protein product [Vitis vinifera]
Length = 770
Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 85/272 (31%), Positives = 147/272 (54%), Gaps = 11/272 (4%)
Query: 65 ARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVL 124
++QLFDE P + + ++ + +E + LF + R+ G + CVL
Sbjct: 45 SQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGL--RRSGSPT---DGSSLSCVL 99
Query: 125 KACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTV 184
K C C + +GKQVH K G ++S+ SL++ Y K +ED + VF +++ N V
Sbjct: 100 KVCGCLFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVV 159
Query: 185 VWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC--GRQMH 242
WT+ + + G Q F +M E IK N +TF++VL GG+ DG G Q+H
Sbjct: 160 SWTSLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVL---GGLAADGAVEKGVQVH 216
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
++K GL+S +V +V+MY K ++ DA+ VF+ + + +N SWN+M+ G++ NGL
Sbjct: 217 TMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSM-ENRNAVSWNSMIAGFVTNGLD 275
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIACSSI 334
+EA + Y M+ G+++ +++ + C++I
Sbjct: 276 LEAFELFYRMRLEGVKLTQTIFATVIKLCANI 307
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 138/287 (48%), Gaps = 7/287 (2%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M++ ++ ++FDEM +++ SW ++ GY ++ + LF++M
Sbjct: 133 LVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQMQLEGIKPN 192
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
F A VL +E G QVH ++ K G I + S++N Y K + DA
Sbjct: 193 PFTFAA-----VLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDA 247
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
VF ++ N V W + I G + F F M E +K F++V+K C +
Sbjct: 248 KAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANI 307
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
+ + +Q+H ++K G + D ++ L+ Y KC + DA ++F ++ +N+ SW A
Sbjct: 308 -KEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTA 366
Query: 292 MLVGYIRNGLYVEATK-FLYLMKASGIQIQESLINDLRIACSSISAS 337
++ GY++NG A F + + G++ E + + AC++ +AS
Sbjct: 367 IISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSVLNACAAPTAS 413
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 84/283 (29%), Positives = 135/283 (47%), Gaps = 8/283 (2%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
+ + T+ N ++ M+ + A+ +FD M R+ SW MI G+V E
Sbjct: 221 KSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFE 280
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
LF M R +G L I V+K C M KQ+H + K GS ++++ +L
Sbjct: 281 LFYRM--RLEGVKL---TQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTAL 335
Query: 159 INFYGKFRCLEDADFVFSQLKR-HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRER-IKK 216
+ Y K ++DA +F + N V WTA I + G + N F +M RE ++
Sbjct: 336 MVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREEGVEP 395
Query: 217 NSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERV 276
N +TFSSVL AC G+Q H+ +K G + V LV MY K + A V
Sbjct: 396 NEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEV 455
Query: 277 FELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQI 319
F+ VD +++ SWN+M+ GY ++G ++ K M++ +++
Sbjct: 456 FKRQVD-RDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLEL 497
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 75/300 (25%), Positives = 135/300 (45%), Gaps = 23/300 (7%)
Query: 6 LPITTDMYTCLIKECTFQKDSAGAFELLNHIRKR-----VNIKPTLLFLNRLLLMHVSCG 60
+ +T ++ +IK C K+ + A +L + K +NIK L+ + + C
Sbjct: 290 VKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALM------VAYSKCS 343
Query: 61 QLDTARQLFDEM-PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AW 118
++D A +LF M +++ SW +I GYV + LF +M +R++G V P +
Sbjct: 344 EIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQM-RREEG----VEPNEF 398
Query: 119 IIVCVLKACVC-TMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQ 177
VL AC T ++E GKQ H K G S + ++ +L+ Y K +E A+ VF +
Sbjct: 399 TFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFKR 458
Query: 178 LKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--GGVDDDG 235
+ V W + I + G + F+EM + ++ + TF V+ AC G+ ++G
Sbjct: 459 QVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISACTHAGLVNEG 518
Query: 236 NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
+ I + + E+ C +VD+Y + +L A + + W +L
Sbjct: 519 QRYFDLMVKDYHI-VPTMEHYSC-MVDLYSRAGMLEKAMDLINKMPFPAGATIWRTLLAA 576
>gi|110289149|gb|ABB47711.2| pentatricopeptide, putative [Oryza sativa Japonica Group]
Length = 697
Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 93/332 (28%), Positives = 154/332 (46%), Gaps = 8/332 (2%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCG 60
+D L T +Y LI C + A + H+ ++ N L+ ++ CG
Sbjct: 55 VDARELAATPRLYHSLITACARYRSLDDARAIHAHLAGS-QFAGSVFLDNSLIHLYCKCG 113
Query: 61 QLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWII 120
+ AR++FD MP RD SW +I GY E + L M++ + F
Sbjct: 114 AVADARRVFDGMPARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTF----- 168
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
+LKA + + +G+Q+H L K ++ + +L++ Y + ++ A VF QL+
Sbjct: 169 ASLLKAAGASASSGIGEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLES 228
Query: 181 HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQ 240
N V W A I R+G F EM R + +T+SSV A G+ G+
Sbjct: 229 KNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQ-GKW 287
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
+HA+++K G +V ++DMY K + DA +VF+ VDKK++ +WN+ML + + G
Sbjct: 288 VHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDR-VDKKDVVTWNSMLTAFAQYG 346
Query: 301 LYVEATKFLYLMKASGIQIQESLINDLRIACS 332
L EA M+ G+ + + + ACS
Sbjct: 347 LGREAVTHFEEMRKCGVHLNQITFLSILTACS 378
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 69/148 (46%), Gaps = 9/148 (6%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N +L M+ G + AR++FD + +D +W M+ + +E +T F EM RK G
Sbjct: 305 NTILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEM--RKCG 362
Query: 110 -HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
H+ + + +L AC ++ GKQ ++ + I ++++ G+ L
Sbjct: 363 VHLNQI----TFLSILTACSHGGLVKEGKQYFDMMKEYNLEPEIDHYVTVVDLLGRAGLL 418
Query: 169 EDA-DFVFSQLKRHNTVVWTAKIVNNCR 195
DA F+F + VW A ++ +CR
Sbjct: 419 NDALVFIFKMPMKPTAAVWGA-LLGSCR 445
>gi|356547226|ref|XP_003542017.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g37170-like [Glycine max]
Length = 693
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 101/354 (28%), Positives = 166/354 (46%), Gaps = 36/354 (10%)
Query: 9 TTDMYTCLIKECTFQKDSAGAFELLNHIR---KRVNIKPTLLFLNRLLLMHVSCGQLDTA 65
+ +Y+ LI C + A EL + K N P + NRLL M+ CG L A
Sbjct: 86 SARVYSTLIAACVRHR----ALELGRRVHAHTKASNFVPGVFISNRLLDMYAKCGSLVDA 141
Query: 66 RQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRK--------KGHMLLVFP- 116
+ LFDEM RD SW MIVGY + ++ LF EM +R G++ P
Sbjct: 142 QMLFDEMGHRDLCSWNTMIVGYAKLGRLEQARKLFDEMPQRDNFSWNAAISGYVTHNQPR 201
Query: 117 -AWIIVCVLKACVCTMN-----------------MELGKQVHGLLFKLGSSRNISLTGSL 158
A + V++ + + + LGK++HG L + + + + +L
Sbjct: 202 EALELFRVMQRHERSSSNKFTLSSALAASAAIPCLRLGKEIHGYLIRTELNLDEVVWSAL 261
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
++ YGK L++A +F Q+K + V WT I +G + F F+++ + ++ N
Sbjct: 262 LDLYGKCGSLDEARGIFDQMKDRDVVSWTTMIHRCFEDGRREEGFLLFRDLMQSGVRPNE 321
Query: 219 YTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE 278
YTF+ VL AC + + G+++H ++ G + + LV MY KC R A RVF
Sbjct: 322 YTFAGVLNACADHAAE-HLGKEVHGYMMHAGYDPGSFAISALVHMYSKCGNTRVARRVFN 380
Query: 279 LIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+ + ++ SW +++VGY +NG EA F L+ SG + + + AC+
Sbjct: 381 EM-HQPDLVSWTSLIVGYAQNGQPDEALHFFELLLQSGTKPDQVTYVGVLSACT 433
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 61/258 (23%), Positives = 105/258 (40%), Gaps = 40/258 (15%)
Query: 117 AWIIVCVLKACVCTMNMELGKQVHG-------------------------------LLFK 145
A + ++ ACV +ELG++VH +LF
Sbjct: 87 ARVYSTLIAACVRHRALELGRRVHAHTKASNFVPGVFISNRLLDMYAKCGSLVDAQMLFD 146
Query: 146 LGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFND 205
R++ ++I Y K LE A +F ++ + + W A I +
Sbjct: 147 EMGHRDLCSWNTMIVGYAKLGRLEQARKLFDEMPQRDNFSWNAAISGYVTHNQPREALEL 206
Query: 206 FKEMGR-ERIKKNSYTFSSVLKACGGVDDDGNC---GRQMHANIVKIGLESDEYVQCGLV 261
F+ M R ER N +T SS L A + C G+++H +++ L DE V L+
Sbjct: 207 FRVMQRHERSSSNKFTLSSALAASAAIP----CLRLGKEIHGYLIRTELNLDEVVWSALL 262
Query: 262 DMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQE 321
D+YGKC L +A +F+ + D +++ SW M+ +G E + SG++ E
Sbjct: 263 DLYGKCGSLDEARGIFDQMKD-RDVVSWTTMIHRCFEDGRREEGFLLFRDLMQSGVRPNE 321
Query: 322 SLINDLRIACSSISASKI 339
+ AC+ +A +
Sbjct: 322 YTFAGVLNACADHAAEHL 339
Score = 44.7 bits (104), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 70/159 (44%), Gaps = 18/159 (11%)
Query: 44 PTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEM 103
P ++ L+ M+ CG AR++F+EM D SW +IVGY E + F +
Sbjct: 354 PGSFAISALVHMYSKCGNTRVARRVFNEMHQPDLVSWTSLIVGYAQNGQPDEALHFFELL 413
Query: 104 MKRKKGHMLLVFPAWIIVCVLKACVCTMNMELG-------KQVHGLLFKLGSSRNISLTG 156
++ + + V VL AC ++ G K+ HGL+ ++ + +
Sbjct: 414 LQSGTKPDQVTY-----VGVLSACTHAGLVDKGLEYFHSIKEKHGLMH---TADHYACVI 465
Query: 157 SLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCR 195
L+ G+F+ E + + + + + +W A ++ CR
Sbjct: 466 DLLARSGRFK--EAENIIDNMPVKPDKFLW-ASLLGGCR 501
>gi|125545042|gb|EAY91181.1| hypothetical protein OsI_12790 [Oryza sativa Indica Group]
Length = 885
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 83/289 (28%), Positives = 149/289 (51%), Gaps = 7/289 (2%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ CG++ A+ +FD MP R+ +W MI GY ++ I LF +M R+
Sbjct: 591 LVTMYARCGEVFDAQAVFDMMPRRNTITWTSMISGYAQSGHGEKAIFLFRKMKMRR---- 646
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+ IV +L AC ++ LGK++H + K N+ + +L+ FY K A
Sbjct: 647 -VFVNNLTIVGLLSACGSLQSLYLGKELHAQIIKNSMEDNLQIGSTLVWFYCKCGEYTYA 705
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
+ + + + WTA I GH + +M + +K N+YT+SS LKAC +
Sbjct: 706 ARILEAMPDRDAISWTALISGYNNLGHNVEALKSLDDMLWDGVKPNTYTYSSALKACAKL 765
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
+ GR++H + K S+ +V L+DMY +C + +A RVF+ + + N+ +W
Sbjct: 766 EAL-QYGRKIHGFVNKTQDFSNVFVGSSLIDMYMRCGKVDEARRVFDAMPEH-NLVTWKV 823
Query: 292 MLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKIN 340
++ G+ +NGL EA K++YLM+ G ++ + +++ + +C + I+
Sbjct: 824 IITGFAQNGLCEEALKYMYLMQQEGHEVDDFVLSTVLTSCGDLQWKSIS 872
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 85/287 (29%), Positives = 145/287 (50%), Gaps = 8/287 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ + ++ AR++FDEMP R SW M+ Y+ + Y E + LF +M+
Sbjct: 388 NNLISAYARFDEVSDARKVFDEMPERSVVSWTAMMNAYLKLGHYGEVVRLFFDMVGSGVQ 447
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
L F VC+LK+C + +LG+QVH + K G S N+ + ++ +FY + +
Sbjct: 448 GNSLTF-----VCLLKSCGERCDAKLGQQVHCCIVKGGWS-NVIVDSAIAHFYAQCGDVA 501
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A +F ++ + + WT I + GH Q F EM E + N +T SVLKAC
Sbjct: 502 SASAIFDKMASRDVISWTTMITAYVQHGHGGQALRMFSEMVSEGFRPNEFTVCSVLKAC- 560
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ G+Q+H ++K ++D ++ LV MY +C + DA+ VF+++ ++N +W
Sbjct: 561 AEEKAVRFGKQLHCAVLKKMYKNDIHIGSALVTMYARCGEVFDAQAVFDMM-PRRNTITW 619
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+M+ GY ++G +A MK + + I L AC S+ +
Sbjct: 620 TSMISGYAQSGHGEKAIFLFRKMKMRRVFVNNLTIVGLLSACGSLQS 666
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 86/282 (30%), Positives = 133/282 (47%), Gaps = 9/282 (3%)
Query: 56 HVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVF 115
+ CG + +A +FD+M RD SW MI YV + + +F+EM+
Sbjct: 494 YAQCGDVASASAIFDKMASRDVISWTTMITAYVQHGHGGQALRMFSEMVSEG------FR 547
Query: 116 PAWIIVC-VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFV 174
P VC VLKAC + GKQ+H + K +I + +L+ Y + + DA V
Sbjct: 548 PNEFTVCSVLKACAEEKAVRFGKQLHCAVLKKMYKNDIHIGSALVTMYARCGEVFDAQAV 607
Query: 175 FSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDD 234
F + R NT+ WT+ I + GH + F++M R+ N+ T +L ACG +
Sbjct: 608 FDMMPRRNTITWTSMISGYAQSGHGEKAIFLFRKMKMRRVFVNNLTIVGLLSACGSLQSL 667
Query: 235 GNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLV 294
G+++HA I+K +E + + LV Y KC A R+ E + D+ I SW A++
Sbjct: 668 -YLGKELHAQIIKNSMEDNLQIGSTLVWFYCKCGEYTYAARILEAMPDRDAI-SWTALIS 725
Query: 295 GYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
GY G VEA K L M G++ + AC+ + A
Sbjct: 726 GYNNLGHNVEALKSLDDMLWDGVKPNTYTYSSALKACAKLEA 767
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 98/200 (49%), Gaps = 3/200 (1%)
Query: 137 KQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCRE 196
++VH + + S + +LI+ Y +F + DA VF ++ + V WTA + +
Sbjct: 369 RRVHAVAVRSLDSLGTFVANNLISAYARFDEVSDARKVFDEMPERSVVSWTAMMNAYLKL 428
Query: 197 GHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYV 256
GH+ +V F +M ++ NS TF +LK+C G D G+Q+H IVK G S+ V
Sbjct: 429 GHYGEVVRLFFDMVGSGVQGNSLTFVCLLKSC-GERCDAKLGQQVHCCIVKGGW-SNVIV 486
Query: 257 QCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASG 316
+ Y +C + A +F+ + +++ SW M+ Y+++G +A + M + G
Sbjct: 487 DSAIAHFYAQCGDVASASAIFDKMA-SRDVISWTTMITAYVQHGHGGQALRMFSEMVSEG 545
Query: 317 IQIQESLINDLRIACSSISA 336
+ E + + AC+ A
Sbjct: 546 FRPNEFTVCSVLKACAEEKA 565
>gi|296084954|emb|CBI28363.3| unnamed protein product [Vitis vinifera]
Length = 930
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 92/288 (31%), Positives = 148/288 (51%), Gaps = 14/288 (4%)
Query: 34 NHIRKRVNIKP---------TLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMI 84
NHI + +KP T LF N L M+V+ G + AR+LFDEMP R SW +++
Sbjct: 32 NHI-AQTKLKPIPQNEIHARTRLF-NLYLRMYVNAGAMQEARKLFDEMPERSLVSWTIVM 89
Query: 85 VGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLF 144
GY E + +F +M+ G LL +++ VL+AC + G+ VHGL+
Sbjct: 90 SGYARHGPASEVLMMFWDMLCGSGGG-LLRPDSFVFAVVLRACGMVECLSYGRGVHGLVV 148
Query: 145 KLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFN 204
K S + + +L++ YG LEDA VF + + + V W++ + + G +
Sbjct: 149 KQSSVVDSFVENALVSMYGSCGALEDAAVVFGGIDKPDLVGWSSILSGYVKNGLEEEGLR 208
Query: 205 DFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMY 264
F +M I+ +++ FS VL AC + + + G Q H I+K+G +S Y++ L+D Y
Sbjct: 209 IFCDMVSGGIEPDAFAFSMVLGACTNL-ECWDFGTQAHCYIIKMGFDSCLYLENSLMDFY 267
Query: 265 GKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLM 312
KC L RVF + +KN+ SWN + GY+ N Y+EA + ++
Sbjct: 268 AKCGDLEGMRRVFSHM-SEKNLVSWNTFINGYVHNFHYLEALRIFQIL 314
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 84/323 (26%), Positives = 139/323 (43%), Gaps = 49/323 (15%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ SCG L+ A +F + D W+ ++ GYV +E + +F +M+
Sbjct: 160 NALVSMYGSCGALEDAAVVFGGIDKPDLVGWSSILSGYVKNGLEEEGLRIFCDMVSGG-- 217
Query: 110 HMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+ P A+ VL AC + G Q H + K+G + L SL++FY K L
Sbjct: 218 ----IEPDAFAFSMVLGACTNLECWDFGTQAHCYIIKMGFDSCLYLENSLMDFYAKCGDL 273
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
E VFS + N V W I H+ + F+ + E + + ++ S+LKA
Sbjct: 274 EGMRRVFSHMSEKNLVSWNTFINGYVHNFHYLEALRIFQILMEEVSQCDDFSLLSILKAV 333
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKC--------------------- 267
G+ + G+++H I++ G+E++ YV L+DMY C
Sbjct: 334 SGLGHLDH-GKEIHGYILRAGIETNRYVVSSLLDMYIGCIDHESLYPRVEVPLKLLNYLE 392
Query: 268 -------------------RLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKF 308
L A+RVF V++ + A W+A++ G+ NG + EA K
Sbjct: 393 GGGYDEFIMTSLLKWCSLESSLETAKRVFTR-VEQPDTAPWSALISGHSWNGCFAEALKL 451
Query: 309 LYLMKASGIQIQESLINDLRIAC 331
M+ GI+ E + +AC
Sbjct: 452 FRKMQFDGIKANEFTFTSVILAC 474
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 77/328 (23%), Positives = 146/328 (44%), Gaps = 48/328 (14%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L N L+ + CG L+ R++F M ++ SW I GYV Y E + +F +M+
Sbjct: 257 LYLENSLMDFYAKCGDLEGMRRVFSHMSEKNLVSWNTFINGYVHNFHYLEALRIFQILME 316
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFY--- 162
+ + ++ +LKA +++ GK++HG + + G N + SL++ Y
Sbjct: 317 E-----VSQCDDFSLLSILKAVSGLGHLDHGKEIHGYILRAGIETNRYVVSSLLDMYIGC 371
Query: 163 ----------------------GKF---------------RCLEDADFVFSQLKRHNTVV 185
G + LE A VF+++++ +T
Sbjct: 372 IDHESLYPRVEVPLKLLNYLEGGGYDEFIMTSLLKWCSLESSLETAKRVFTRVEQPDTAP 431
Query: 186 WTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANI 245
W+A I + G F + F++M + IK N +TF+SV+ AC +++ G+++H I
Sbjct: 432 WSALISGHSWNGCFAEALKLFRKMQFDGIKANEFTFTSVILACLALENLRK-GKELHCKI 490
Query: 246 VKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEA 305
++ G ES+ V L+++Y + + A ++ +I D + SWN ++ + Y
Sbjct: 491 LRSGYESNFSVVNTLINLYSELWQHKQALKLCSMIPDSE--ISWNFLIRACLGAEDYEII 548
Query: 306 TKFLYLMKASGIQIQESLINDLRIACSS 333
K L+ ++ S + D+ +CSS
Sbjct: 549 HKLLWRIQVSHGNLDPVSACDIFASCSS 576
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 92/183 (50%), Gaps = 12/183 (6%)
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEM----GRERI 214
+ Y +++A +F ++ + V WT + R G +V F +M G +
Sbjct: 58 LRMYVNAGAMQEARKLFDEMPERSLVSWTIVMSGYARHGPASEVLMMFWDMLCGSGGGLL 117
Query: 215 KKNSYTFSSVLKACGGVDDDGNC---GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLR 271
+ +S+ F+ VL+ACG V+ C GR +H +VK D +V+ LV MYG C L
Sbjct: 118 RPDSFVFAVVLRACGMVE----CLSYGRGVHGLVVKQSSVVDSFVENALVSMYGSCGALE 173
Query: 272 DAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
DA VF I DK ++ W+++L GY++NGL E + M + GI+ + + AC
Sbjct: 174 DAAVVFGGI-DKPDLVGWSSILSGYVKNGLEEEGLRIFCDMVSGGIEPDAFAFSMVLGAC 232
Query: 332 SSI 334
+++
Sbjct: 233 TNL 235
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 61/276 (22%), Positives = 116/276 (42%), Gaps = 12/276 (4%)
Query: 61 QLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWII 120
L+TA+++F + D W+ +I G+ + E + LF +M F +
Sbjct: 413 SLETAKRVFTRVEQPDTAPWSALISGHSWNGCFAEALKLFRKMQFDGIKANEFTFTS--- 469
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
V+ AC+ N+ GK++H + + G N S+ +LIN Y + + A + S +
Sbjct: 470 --VILACLALENLRKGKELHCKILRSGYESNFSVVNTLINLYSELWQHKQALKLCSMIPD 527
Query: 181 HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDG--NCG 238
+ + W ++ C +++ + K + R ++ + S N G
Sbjct: 528 -SEISWNF-LIRACLGAEDYEIIH--KLLWRIQVSHGNLDPVSACDIFASCSSPVLLNVG 583
Query: 239 RQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIR 298
Q HA + K GL S + L+ MY C +A + F L+ +K+ SW ++L +
Sbjct: 584 TQAHAYMTKRGLISHPTISNSLIQMYSACGKFDEAVQAFNLM-PEKDTCSWTSILSARVE 642
Query: 299 NGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
+G EA + M+ +S + AC+ +
Sbjct: 643 HGHPSEALNLISQMRWKNKPADQSTFRSVLNACAQM 678
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 65/151 (43%), Gaps = 2/151 (1%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
+ +C + + +G Q H + K G + +++ SLI Y ++A F+ + +
Sbjct: 570 IFASCSSPVLLNVGTQAHAYMTKRGLISHPTISNSLIQMYSACGKFDEAVQAFNLMPEKD 629
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
T WT+ + GH + N +M + + TF SVL AC + R
Sbjct: 630 TCSWTSILSARVEHGHPSEALNLISQMRWKNKPADQSTFRSVLNACAQMGLVDEAFRLFF 689
Query: 243 ANIVKIGLES-DEYVQCGLVDMYGKCRLLRD 272
+ G+E +E+ C +V++ G+ + +
Sbjct: 690 SMKEVYGIEPLEEHYSC-MVEVLGRAGMFEE 719
Score = 42.0 bits (97), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
N L+ M+ +CG+ D A Q F+ MP +D SW ++ V+ E + L ++M + K
Sbjct: 603 NSLIQMYSACGKFDEAVQAFNLMPEKDTCSWTSILSARVEHGHPSEALNLISQMRWKNK 661
>gi|255536747|ref|XP_002509440.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549339|gb|EEF50827.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 678
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 101/368 (27%), Positives = 171/368 (46%), Gaps = 47/368 (12%)
Query: 7 PITTDMYTCLIKECTFQKDSAGAFELLNHIRK-RVNIKPTLLFLNRLLLMHVSCGQLDTA 65
PI+ Y+ L+ +CT K S E+ H R ++ + N L+ ++ C A
Sbjct: 104 PISIS-YSNLLFQCTASKASTPGKEI--HARVIKLGLSQDPKIRNLLINLYSKCQFFKYA 160
Query: 66 RQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHML------LVFPA-- 117
R++ DE D SW+ +I GY +E I+ F EM H+L FP+
Sbjct: 161 RKMVDESTEPDLVSWSALISGYSQNGFGKEAISAFYEM------HLLGVKCNEFTFPSLL 214
Query: 118 ---------WI----------------IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNI 152
W+ + C++ AC + G+++HG L KL ++
Sbjct: 215 KACTSTTDMWLGRQDMILSGIRPNEFSLSCMINACTGLEDSSQGRKIHGYLIKLAYDLDL 274
Query: 153 SLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFH-QVFNDFKEMGR 211
+L++ Y K LE+A VF ++ + + V W A I+ C +H F +M R
Sbjct: 275 FSANALVDMYAKVGTLEEAIRVFEEIAKPDIVSWNA-IIAGCALREYHCWALELFGKMNR 333
Query: 212 ERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLR 271
+ N +T SS LKAC G+ GRQ+H++++K+ + SD ++ GL+DMY KC L+
Sbjct: 334 SGMCPNMFTISSALKACAGMGLK-ELGRQLHSSLLKMDIRSDSFLAVGLIDMYSKCDLMT 392
Query: 272 DAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
DA +F L+ ++ I WNA + G+ +NG +EA M G+ + ++ + +
Sbjct: 393 DARLLFNLMPERDLIV-WNAAITGHSQNGEDLEAVSLFPSMHKEGVGFNQITLSTVLKSV 451
Query: 332 SSISASKI 339
+S+ I
Sbjct: 452 ASLQVDHI 459
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 85/295 (28%), Positives = 141/295 (47%), Gaps = 7/295 (2%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
+++I+ L+ M+ C + AR LF+ MP RD W I G+ + E ++
Sbjct: 368 KMDIRSDSFLAVGLIDMYSKCDLMTDARLLFNLMPERDLIVWNAAITGHSQNGEDLEAVS 427
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
LF M K G F + VLK+ + Q+H L K G + + SL
Sbjct: 428 LFPSMHKEGVG-----FNQITLSTVLKSVASLQVDHICSQIHALSLKSGFQFDNYVANSL 482
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
I+ YGK ++DA +F + + V +T+ I ++G + + EM +I+ +S
Sbjct: 483 IDTYGKCGRIKDATRIFQESPFVDLVAFTSMITAYSQDGQGEEALKLYLEMQDRKIRPDS 542
Query: 219 YTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE 278
+ SS+L AC + G+Q+H +++K G SD + LV+MY KC + DA+R F
Sbjct: 543 FVCSSLLNACANLSAYEQ-GKQVHVHVLKFGFISDIFAGNSLVNMYAKCGSIDDADRAFS 601
Query: 279 LIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSS 333
I ++ I SW+AM+ G+ ++G EA + M GI + D+ AC+
Sbjct: 602 EI-PERGIVSWSAMIGGFAQHGHGKEALQLFNRMLEDGIPPNHMYVYDVPSACNP 655
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 95/325 (29%), Positives = 159/325 (48%), Gaps = 12/325 (3%)
Query: 14 TCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMP 73
+C+I CT +DS+ ++ ++ K + L N L+ M+ G L+ A ++F+E+
Sbjct: 243 SCMINACTGLEDSSQGRKIHGYLIK-LAYDLDLFSANALVDMYAKVGTLEEAIRVFEEIA 301
Query: 74 LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNM 133
D SW +I G + + LF +M + G +F I LKAC
Sbjct: 302 KPDIVSWNAIIAGCALREYHCWALELFGKM--NRSGMCPNMF---TISSALKACAGMGLK 356
Query: 134 ELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNN 193
ELG+Q+H L K+ + L LI+ Y K + DA +F+ + + +VW A I +
Sbjct: 357 ELGRQLHSSLLKMDIRSDSFLAVGLIDMYSKCDLMTDARLLFNLMPERDLIVWNAAITGH 416
Query: 194 CREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESD 253
+ G + + F M +E + N T S+VLK+ + D C Q+HA +K G + D
Sbjct: 417 SQNGEDLEAVSLFPSMHKEGVGFNQITLSTVLKSVASLQVDHICS-QIHALSLKSGFQFD 475
Query: 254 EYVQCGLVDMYGKCRLLRDAERVFE--LIVDKKNIASWNAMLVGYIRNGLYVEATKFLYL 311
YV L+D YGKC ++DA R+F+ VD + ++ +M+ Y ++G EA K
Sbjct: 476 NYVANSLIDTYGKCGRIKDATRIFQESPFVD---LVAFTSMITAYSQDGQGEEALKLYLE 532
Query: 312 MKASGIQIQESLINDLRIACSSISA 336
M+ I+ + + L AC+++SA
Sbjct: 533 MQDRKIRPDSFVCSSLLNACANLSA 557
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 82/175 (46%), Gaps = 6/175 (3%)
Query: 164 KFRCLEDADFVFSQLKRHNTVVWTAKIVN---NCREGHFHQVFNDFKEMGRERIKKNSYT 220
+ CL F+ K ++ +K VN N + + HQ F S +
Sbjct: 50 SYICLNPGIFMMLIRKTVAQTLYFSKFVNFIHNPAQINQHQNITTFSSSNFHSTPI-SIS 108
Query: 221 FSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELI 280
+S++L C G+++HA ++K+GL D ++ L+++Y KC+ + A ++ +
Sbjct: 109 YSNLLFQCTA-SKASTPGKEIHARVIKLGLSQDPKIRNLLINLYSKCQFFKYARKMVDES 167
Query: 281 VDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
+ ++ SW+A++ GY +NG EA Y M G++ E L AC+S +
Sbjct: 168 TEP-DLVSWSALISGYSQNGFGKEAISAFYEMHLLGVKCNEFTFPSLLKACTSTT 221
>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 868
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 100/357 (28%), Positives = 160/357 (44%), Gaps = 46/357 (12%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
+ L+ C + + +HI +R ++ ++ N L+ M+ C + AR++FD M
Sbjct: 261 FVSLLNSCNTPEALNRGRRIHSHISER-GLETDMIVANALITMYCKCNSVQEAREIFDRM 319
Query: 73 PLRDFNSWAVMIVGYV-----DVADYQECITLFAEMMKRKKGHMLLVFPAWI-IVCVLKA 126
RD SW+ MI GY D E L M R++G VFP + + +L+A
Sbjct: 320 SKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERM--RREG----VFPNKVTFMSILRA 373
Query: 127 CVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVW 186
C +E G+Q+H L K+G + SL ++ N Y K + +A+ VFS++ N V W
Sbjct: 374 CTAHGALEQGRQIHAELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAW 433
Query: 187 TA-------------------------------KIVNNCREGHFHQVFNDFKEMGRERIK 215
T+ I + G +VF M E +
Sbjct: 434 TSFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQ 493
Query: 216 KNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAER 275
+ T ++L+ACG + G+ +HA VK+GLESD V L+ MY KC + +A
Sbjct: 494 PDRVTVITILEACGALAGLER-GKLVHAEAVKLGLESDTVVATSLIGMYSKCGQVAEART 552
Query: 276 VFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
VF+ + ++ +A WNAML GY ++G +EA M + E + + ACS
Sbjct: 553 VFDKMSNRDTVA-WNAMLAGYGQHGDGLEAVDLFKRMLKERVSPNEITLTAVISACS 608
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 83/342 (24%), Positives = 156/342 (45%), Gaps = 47/342 (13%)
Query: 33 LNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVAD 92
++ I K + ++ + L+ M+ CG++ A ++F +M R+ SW +I
Sbjct: 179 IHTIVKAMGMETDVAVATALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQANAQHRK 238
Query: 93 YQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNI 152
E L+ +M++ + F V +L +C + G+++H + + G ++
Sbjct: 239 LNEAFELYEQMLQAGISPNAVTF-----VSLLNSCNTPEALNRGRRIHSHISERGLETDM 293
Query: 153 SLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGH-----FHQVFNDFK 207
+ +LI Y K +++A +F ++ + + + W+A I + G+ +VF +
Sbjct: 294 IVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLE 353
Query: 208 EMGRERIKKNSYTFSSVLKAC---GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMY 264
M RE + N TF S+L+AC G ++ GRQ+HA + K+G E D +Q + +MY
Sbjct: 354 RMRREGVFPNKVTFMSILRACTAHGALEQ----GRQIHAELSKVGFELDRSLQTAIFNMY 409
Query: 265 GKCRLLRDAERVFELIVDK------------------------------KNIASWNAMLV 294
KC + +AE+VF + +K +N+ SWN M+
Sbjct: 410 AKCGSIYEAEQVFSKMANKNVVAWTSFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMIA 469
Query: 295 GYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
GY +NG V+ + L MKA G Q + + AC +++
Sbjct: 470 GYAQNGDIVKVFELLSSMKAEGFQPDRVTVITILEACGALAG 511
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/298 (27%), Positives = 150/298 (50%), Gaps = 14/298 (4%)
Query: 6 LPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVN---IKPTLLFLNRLLLMHVSCGQL 62
L + ++ Y C+I+ C A FE + K+++ ++ + N L+ + +
Sbjct: 52 LLVNSNTYGCVIEHCA----KARRFEDGKMVHKQLDELGVEIDIYLGNSLINFYSKFEDV 107
Query: 63 DTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVC 122
+A Q+F M LRD +W+ MI Y + F M + F +
Sbjct: 108 ASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPNRITF-----LS 162
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
+LKAC +E G+++H ++ +G ++++ +LI Y K + A VF ++ N
Sbjct: 163 ILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYSKCGEISVACEVFHKMTERN 222
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
V WTA I N + ++ F +++M + I N+ TF S+L +C + N GR++H
Sbjct: 223 VVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSC-NTPEALNRGRRIH 281
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
++I + GLE+D V L+ MY KC +++A +F+ + K+++ SW+AM+ GY ++G
Sbjct: 282 SHISERGLETDMIVANALITMYCKCNSVQEAREIFDRM-SKRDVISWSAMIAGYAQSG 338
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 72/245 (29%), Positives = 121/245 (49%), Gaps = 11/245 (4%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L M++ CG L +A ++F EMP R+ SW +MI GY D + L + M + +G
Sbjct: 436 FLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSM--KAEGFQ 493
Query: 112 LLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
P + ++ +L+AC +E GK VH KLG + + SLI Y K + +
Sbjct: 494 ----PDRVTVITILEACGALAGLERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGQVAE 549
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC-- 228
A VF ++ +TV W A + + G + + FK M +ER+ N T ++V+ AC
Sbjct: 550 ARTVFDKMSNRDTVAWNAMLAGYGQHGDGLEAVDLFKRMLKERVSPNEITLTAVISACSR 609
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
G+ +G +M K+ Y C +VD+ G+ L++AE + + + +I+
Sbjct: 610 AGLVQEGREIFRMMQEDFKMTPRKQHY-GC-MVDLLGRAGRLQEAEEFIQSMPCEPDISV 667
Query: 289 WNAML 293
W+A+L
Sbjct: 668 WHALL 672
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 104/215 (48%), Gaps = 2/215 (0%)
Query: 122 CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH 181
CV++ C E GK VH L +LG +I L SLINFY KF + A+ VF ++
Sbjct: 61 CVIEHCAKARRFEDGKMVHKQLDELGVEIDIYLGNSLINFYSKFEDVASAEQVFRRMTLR 120
Query: 182 NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQM 241
+ V W++ I H + F+ F+ M I+ N TF S+LKAC GR++
Sbjct: 121 DVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPNRITFLSILKACNNYSILEK-GRKI 179
Query: 242 HANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGL 301
H + +G+E+D V L+ MY KC + A VF + + +N+ SW A++ ++
Sbjct: 180 HTIVKAMGMETDVAVATALITMYSKCGEISVACEVFHKMTE-RNVVSWTAIIQANAQHRK 238
Query: 302 YVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
EA + M +GI L +C++ A
Sbjct: 239 LNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEA 273
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 75/155 (48%), Gaps = 13/155 (8%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
++ ++ + L+ M+ CGQ+ AR +FD+M RD +W M+ GY D E +
Sbjct: 524 KLGLESDTVVATSLIGMYSKCGQVAEARTVFDKMSNRDTVAWNAMLAGYGQHGDGLEAVD 583
Query: 99 LFAEMMKRKKGHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLL---FKLGSSRNISL 154
LF M+K + V P I + V+ AC ++ G+++ ++ FK+ +
Sbjct: 584 LFKRMLKER------VSPNEITLTAVISACSRAGLVQEGREIFRMMQEDFKMTPRKQ--H 635
Query: 155 TGSLINFYGKFRCLEDA-DFVFSQLKRHNTVVWTA 188
G +++ G+ L++A +F+ S + VW A
Sbjct: 636 YGCMVDLLGRAGRLQEAEEFIQSMPCEPDISVWHA 670
>gi|225423551|ref|XP_002274884.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03380,
mitochondrial [Vitis vinifera]
gi|147818711|emb|CAN65040.1| hypothetical protein VITISV_009460 [Vitis vinifera]
Length = 700
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 100/329 (30%), Positives = 165/329 (50%), Gaps = 10/329 (3%)
Query: 12 MYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDE 71
+++ ++K C+ +++ +L I K + P L L+ M+ C +++ +R++FDE
Sbjct: 140 VFSIVLKACSELRETDEGRKLHCQIVKVGS--PDSFVLTGLVDMYAKCREVEDSRRVFDE 197
Query: 72 MPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTM 131
+ R+ W MIVGYV +E + LF M ++G L+ + + ++ AC
Sbjct: 198 ILDRNVVCWTSMIVGYVQNDCLKEGLVLFNRM---REG--LVEGNQYTLGSLVTACTKLG 252
Query: 132 NMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIV 191
+ GK VHG + K G N L L++ Y K + DA VF +L + V WTA IV
Sbjct: 253 ALHQGKWVHGYVIKSGFDLNSFLVTPLLDLYFKCGDIRDAFSVFDELSTIDLVSWTAMIV 312
Query: 192 NNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLE 251
+ G+ + F + + + N+ T SSVL AC N GR +H +K+G E
Sbjct: 313 GYAQRGYPREALKLFTDERWKDLLPNTVTTSSVLSACAQTGSL-NMGRSVHCLGIKLGSE 371
Query: 252 SDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYL 311
D + LVDMY KC ++ DA VFE + DK IA WN+++ GY +NG EA +
Sbjct: 372 -DATFENALVDMYAKCHMIGDARYVFETVFDKDVIA-WNSIISGYTQNGYAYEALELFDQ 429
Query: 312 MKASGIQIQESLINDLRIACSSISASKIN 340
M++ + + + AC+S+ A ++
Sbjct: 430 MRSDSVYPDAITLVSVLSACASVGAYRVG 458
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/267 (29%), Positives = 133/267 (49%), Gaps = 13/267 (4%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
LL +L+ ++ S G ++ AR +FD + D SW VMI Y Y E + + ++
Sbjct: 71 LLCETKLVSLYGSFGHVECARLMFDRIRNPDLYSWKVMIRWYFLNDSYSEIVQFYNTRLR 130
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
+ L + + VLKAC + G+++H + K+GS + LTG L++ Y K
Sbjct: 131 K----CLNEYDNVVFSIVLKACSELRETDEGRKLHCQIVKVGSPDSFVLTG-LVDMYAKC 185
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
R +ED+ VF ++ N V WT+ IV + + F M ++ N YT S++
Sbjct: 186 REVEDSRRVFDEILDRNVVCWTSMIVGYVQNDCLKEGLVLFNRMREGLVEGNQYTLGSLV 245
Query: 226 KAC---GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282
AC G + G+ +H ++K G + + ++ L+D+Y KC +RDA VF+ +
Sbjct: 246 TACTKLGALHQ----GKWVHGYVIKSGFDLNSFLVTPLLDLYFKCGDIRDAFSVFDEL-S 300
Query: 283 KKNIASWNAMLVGYIRNGLYVEATKFL 309
++ SW AM+VGY + G EA K
Sbjct: 301 TIDLVSWTAMIVGYAQRGYPREALKLF 327
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 81/288 (28%), Positives = 134/288 (46%), Gaps = 11/288 (3%)
Query: 47 LFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR 106
+ LL ++ CG + A +FDE+ D SW MIVGY +E + LF + +R
Sbjct: 274 FLVTPLLDLYFKCGDIRDAFSVFDELSTIDLVSWTAMIVGYAQRGYPREALKLFTD--ER 331
Query: 107 KKGHMLLVFPAWIIVC-VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
K + P + VL AC T ++ +G+ VH L KLGS + + +L++ Y K
Sbjct: 332 WKD----LLPNTVTTSSVLSACAQTGSLNMGRSVHCLGIKLGS-EDATFENALVDMYAKC 386
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
+ DA +VF + + + W + I + G+ ++ F +M + + ++ T SVL
Sbjct: 387 HMIGDARYVFETVFDKDVIAWNSIISGYTQNGYAYEALELFDQMRSDSVYPDAITLVSVL 446
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDE-YVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
AC V G +H +K GL S YV L++ Y KC A +F+ + +K
Sbjct: 447 SACASVGA-YRVGSSLHGYAIKAGLLSGSVYVGTALLNFYAKCGDAESARVIFDEM-GEK 504
Query: 285 NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
N +W+AM+ GY G + + M ++ E + + ACS
Sbjct: 505 NTITWSAMIGGYGIQGDCSRSLELFGDMLKEKLEPNEVIFTTILSACS 552
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 106/205 (51%), Gaps = 12/205 (5%)
Query: 137 KQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCRE 196
+++H LL G S ++ L++ YG F +E A +F +++ + W I R
Sbjct: 56 RKIHALLVVHGLSEDLLCETKLVSLYGSFGHVECARLMFDRIRNPDLYSWKVMI----RW 111
Query: 197 GHFHQVFNDFKEMGRERIKK--NSY---TFSSVLKACGGVDDDGNCGRQMHANIVKIGLE 251
+ +++ + R++K N Y FS VLKAC + + GR++H IVK+G
Sbjct: 112 YFLNDSYSEIVQFYNTRLRKCLNEYDNVVFSIVLKACSELRETDE-GRKLHCQIVKVG-S 169
Query: 252 SDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYL 311
D +V GLVDMY KCR + D+ RVF+ I+D +N+ W +M+VGY++N E
Sbjct: 170 PDSFVLTGLVDMYAKCREVEDSRRVFDEILD-RNVVCWTSMIVGYVQNDCLKEGLVLFNR 228
Query: 312 MKASGIQIQESLINDLRIACSSISA 336
M+ ++ + + L AC+ + A
Sbjct: 229 MREGLVEGNQYTLGSLVTACTKLGA 253
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 67/251 (26%), Positives = 114/251 (45%), Gaps = 10/251 (3%)
Query: 48 FLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRK 107
F N L+ M+ C + AR +F+ + +D +W +I GY E + LF +M
Sbjct: 375 FENALVDMYAKCHMIGDARYVFETVFDKDVIAWNSIISGYTQNGYAYEALELFDQMRSDS 434
Query: 108 KGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGS-SRNISLTGSLINFYGKF 165
V+P A +V VL AC +G +HG K G S ++ + +L+NFY K
Sbjct: 435 ------VYPDAITLVSVLSACASVGAYRVGSSLHGYAIKAGLLSGSVYVGTALLNFYAKC 488
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
E A +F ++ NT+ W+A I +G + F +M +E+++ N F+++L
Sbjct: 489 GDAESARVIFDEMGEKNTITWSAMIGGYGIQGDCSRSLELFGDMLKEKLEPNEVIFTTIL 548
Query: 226 KACGGVDDDGNCGRQMHANI-VKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
AC G R + V + S ++ C +VD+ + L +A E I +
Sbjct: 549 SACSHSGMLGEGWRYFNTMCQVYNFVPSMKHYAC-MVDLLARAGRLEEALDFIEKIPIQP 607
Query: 285 NIASWNAMLVG 295
+++ A L G
Sbjct: 608 DVSLLGAFLHG 618
>gi|302783925|ref|XP_002973735.1| hypothetical protein SELMODRAFT_99756 [Selaginella moellendorffii]
gi|300158773|gb|EFJ25395.1| hypothetical protein SELMODRAFT_99756 [Selaginella moellendorffii]
Length = 836
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 87/286 (30%), Positives = 147/286 (51%), Gaps = 11/286 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ ++ CG L+ AR++F+ + +D SW+ MI Y + E I ++ M
Sbjct: 258 NALVNVYAKCGDLEGARKVFNRLERKDVISWSTMISAYNQSGRHSEAIEIYRLMESETS- 316
Query: 110 HMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
V P A V V+ AC ++ G QVHG L LG ++++ +L+ Y K L
Sbjct: 317 ----VEPNAVTFVGVIGACTGCGDVIRGIQVHGRLVSLGLETDVAVGSALVQMYVKCGSL 372
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
EDA F ++++ + + W + G QV ++ M ++ N+ T+++VL AC
Sbjct: 373 EDAKKAFDRVEKRDVLCWNFMLSAYSERGSPQQVIEAYEAMD---VEPNAVTYTNVLIAC 429
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
++D G+++H+ IV GLE+D ++ L+ +Y KCR L+ A +VFE + KK++
Sbjct: 430 SAMEDLAQ-GQKVHSRIVSSGLETDMTMETALLSLYIKCRSLKSACQVFEAM-GKKDVIP 487
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
WN M+VGYI + EA + M +G++ + ACS I
Sbjct: 488 WNFMMVGYIDHDCDTEALRLYARMHEAGVEANNVTFANALKACSKI 533
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/270 (29%), Positives = 127/270 (47%), Gaps = 15/270 (5%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
+ F N L+ +H G +R++FD M ++ SW++MI Y E LF M
Sbjct: 58 VYFRNWLIQLHGKFGNTQKSREVFDGMQQKNVYSWSMMIGAYAQNGHRNEAFLLFERMES 117
Query: 106 RKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
+ P A + VL AC + GK+VH + +ISL SL+N Y K
Sbjct: 118 EG------IRPNAVTCLHVLGACSYQNELPFGKKVHAYISASEFKWDISLQTSLVNMYAK 171
Query: 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
DA VF + R + V W A + G H++ +EM + +K N+ T++S+
Sbjct: 172 CGSPADAKAVFDSMARKDIVTWNAMAGASVHNGQSHKL---LREMDLQGVKPNATTYASI 228
Query: 225 LKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
+ G C R M ++ G S VQ LV++Y KC L A +VF + ++K
Sbjct: 229 TR---GSSTLTGC-RAMEQRLLASGYMSHVPVQNALVNVYAKCGDLEGARKVFNRL-ERK 283
Query: 285 NIASWNAMLVGYIRNGLYVEATKFLYLMKA 314
++ SW+ M+ Y ++G + EA + LM++
Sbjct: 284 DVISWSTMISAYNQSGRHSEAIEIYRLMES 313
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 128/285 (44%), Gaps = 12/285 (4%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+V CG L+ A++ FD + RD W M+ Y + Q+ I + M
Sbjct: 362 LVQMYVKCGSLEDAKKAFDRVEKRDVLCWNFMLSAYSERGSPQQVIEAYEAMD------- 414
Query: 112 LLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
V P A VL AC ++ G++VH + G ++++ +L++ Y K R L+
Sbjct: 415 --VEPNAVTYTNVLIACSAMEDLAQGQKVHSRIVSSGLETDMTMETALLSLYIKCRSLKS 472
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
A VF + + + + W +V + + M ++ N+ TF++ LKAC
Sbjct: 473 ACQVFEAMGKKDVIPWNFMMVGYIDHDCDTEALRLYARMHEAGVEANNVTFANALKACSK 532
Query: 231 VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVF-ELIVDKKNIASW 289
+ D G ++ A I G E+D L++MY C L A+RVF +++++ W
Sbjct: 533 IKDI-ETGSKVEAMITTKGFETDVVTDTALLNMYAACGDLEAAKRVFGSRRGERRDVVFW 591
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
AM+ Y + G EA M + I+ + ACSS+
Sbjct: 592 TAMIASYAQAGRGEEALALYKTMLSEEIKPNSVTYTSVLSACSSL 636
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 84/331 (25%), Positives = 144/331 (43%), Gaps = 22/331 (6%)
Query: 8 ITTDMYTCL--IKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTA 65
I + TCL + C++Q + ++ +I K + L+ M+ CG A
Sbjct: 120 IRPNAVTCLHVLGACSYQNELPFGKKVHAYISAS-EFKWDISLQTSLVNMYAKCGSPADA 178
Query: 66 RQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEM-MKRKKGHMLLVFPAWIIVCVL 124
+ +FD M +D +W M V + L EM ++ K + L
Sbjct: 179 KAVFDSMARKDIVTWNAMAGASVHNGQSHK---LLREMDLQGVKPNATTYASITRGSSTL 235
Query: 125 KACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTV 184
C + + L G ++ + +L+N Y K LE A VF++L+R + +
Sbjct: 236 TGC---------RAMEQRLLASGYMSHVPVQNALVNVYAKCGDLEGARKVFNRLERKDVI 286
Query: 185 VWTAKIVNNCREGHFHQVFNDFKEMGRE-RIKKNSYTFSSVLKACGGVDDDGNCGRQMHA 243
W+ I + G + ++ M E ++ N+ TF V+ AC G D G Q+H
Sbjct: 287 SWSTMISAYNQSGRHSEAIEIYRLMESETSVEPNAVTFVGVIGACTGCGDVIR-GIQVHG 345
Query: 244 NIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYV 303
+V +GLE+D V LV MY KC L DA++ F+ V+K+++ WN ML Y G
Sbjct: 346 RLVSLGLETDVAVGSALVQMYVKCGSLEDAKKAFDR-VEKRDVLCWNFMLSAYSERG--- 401
Query: 304 EATKFLYLMKASGIQIQESLINDLRIACSSI 334
+ + +A ++ ++ IACS++
Sbjct: 402 SPQQVIEAYEAMDVEPNAVTYTNVLIACSAM 432
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 92/188 (48%), Gaps = 5/188 (2%)
Query: 151 NISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMG 210
N+ LI +GKF + + VF +++ N W+ I + GH ++ F F+ M
Sbjct: 57 NVYFRNWLIQLHGKFGNTQKSREVFDGMQQKNVYSWSMMIGAYAQNGHRNEAFLLFERME 116
Query: 211 RERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLL 270
E I+ N+ T VL AC ++ G+++HA I + D +Q LV+MY KC
Sbjct: 117 SEGIRPNAVTCLHVLGAC-SYQNELPFGKKVHAYISASEFKWDISLQTSLVNMYAKCGSP 175
Query: 271 RDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIA 330
DA+ VF+ + +K+I +WNAM + NG ++ K L M G++ + +
Sbjct: 176 ADAKAVFDSMA-RKDIVTWNAMAGASVHNG---QSHKLLREMDLQGVKPNATTYASITRG 231
Query: 331 CSSISASK 338
S+++ +
Sbjct: 232 SSTLTGCR 239
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 113/255 (44%), Gaps = 18/255 (7%)
Query: 52 LLLMHVSCGQLDTARQLFDEM--PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
LL M+ +CG L+ A+++F RD W MI Y +E + L+ M+ +
Sbjct: 561 LLNMYAACGDLEAAKRVFGSRRGERRDVVFWTAMIASYAQAGRGEEALALYKTMLSEEIK 620
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ + + VL AC N+ G+++H L ++++ SL++ Y + L
Sbjct: 621 PNSVTYTS-----VLSACSSLGNILEGRKIHSKLEGKAEELDVAVQNSLLSMYARCGSLR 675
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
DA F+++ + WT + GH + +EM + ++ TF SVL AC
Sbjct: 676 DAWSCFAKIHNRDVFSWTGMVAAFAHHGHSARALELVREMELCGVSPDAVTFQSVLHAC- 734
Query: 230 GVDDDGNCGRQMHANIVKIGLE-----SDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
+G+ R A+ V + ++ S ++ C +VD+ + L +A V + + ++
Sbjct: 735 --SHEGSLERGW-ASFVSMAVDYAVEPSKDHYLC-MVDLLARAGRLAEAREVIQFVGLER 790
Query: 285 NIASWNAMLVGYIRN 299
W ML+G R
Sbjct: 791 ESMGW-MMLLGASRT 804
>gi|115475988|ref|NP_001061590.1| Os08g0340900 [Oryza sativa Japonica Group]
gi|38423978|dbj|BAD01706.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
gi|38637396|dbj|BAD03655.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
gi|113623559|dbj|BAF23504.1| Os08g0340900 [Oryza sativa Japonica Group]
gi|215686971|dbj|BAG90841.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 819
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 94/304 (30%), Positives = 143/304 (47%), Gaps = 9/304 (2%)
Query: 35 HIRKRVNIKPTLLFLNRLLLMHVS-CGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADY 93
H R V + LFL LLL S G+L AR LFD MP R+ SW +I Y
Sbjct: 41 HARATVAGRLDDLFLTNLLLRGYSNLGRLRDARHLFDRMPHRNLVSWGSVISMYTQHGRD 100
Query: 94 QECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNIS 153
I+LF K V +++ VL+AC + + LG+QVHG+ KL N+
Sbjct: 101 DCAISLFVAFQKAS----CEVPNEFLLASVLRACTQSKAVSLGEQVHGIAVKLDLDANVY 156
Query: 154 LTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRER 213
+ +LIN Y K C+++A VF L V W I + G F MG E
Sbjct: 157 VGTALINLYAKLGCMDEAMLVFHALPVRTPVTWNTVITGYAQIGCGGVALELFDRMGIEG 216
Query: 214 IKKNSYTFSSVLKACGGVDD-DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRD 272
++ + + +S + AC + +G GRQ+H + E+D V L+D+Y KC L
Sbjct: 217 VRPDRFVLASAVSACSALGFLEG--GRQIHGYAYRSATETDTSVINVLIDLYCKCSRLSA 274
Query: 273 AERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
A ++F+ + + +N+ SW M+ GY++N EA + M +G Q + +C
Sbjct: 275 ARKLFDCM-EYRNLVSWTTMISGYMQNSFNAEAITMFWNMTQAGWQPDGFACTSILNSCG 333
Query: 333 SISA 336
S++A
Sbjct: 334 SLAA 337
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 76/269 (28%), Positives = 132/269 (49%), Gaps = 7/269 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ C L AR +FD + D S+ MI GY D E + +F M
Sbjct: 361 NALIDMYAKCEHLTEARAVFDALAEDDAISYNAMIEGYSKNRDLAEAVNIFQRMRFFSLR 420
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
LL F V +L + +EL KQ+HGL+ K G+S ++ +LI+ Y K +
Sbjct: 421 PSLLTF-----VSLLGVSSSQLAIELSKQIHGLIIKSGTSLDLYAASALIDVYSKCSLVN 475
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
DA VF+ L + V+W + I + + + F ++ + N +TF +++
Sbjct: 476 DAKTVFNMLHYKDMVIWNSMIFGHAQNEQGEEAIKLFNQLLLSGMAPNEFTFVALVTVAS 535
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ + G+Q HA I+K G+++D +V L+DMY KC +++ +FE +++ W
Sbjct: 536 TLASMFH-GQQFHAWIIKAGVDNDPHVSNALIDMYAKCGFIKEGRMLFESTCG-EDVICW 593
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
N+M+ Y ++G EA + LM + ++
Sbjct: 594 NSMITTYAQHGHAEEALQVFRLMGEAEVE 622
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/303 (26%), Positives = 144/303 (47%), Gaps = 10/303 (3%)
Query: 12 MYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDE 71
+ +++ CT Q + E ++ I ++++ + L+ ++ G +D A +F
Sbjct: 122 LLASVLRACT-QSKAVSLGEQVHGIAVKLDLDANVYVGTALINLYAKLGCMDEAMLVFHA 180
Query: 72 MPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCT 130
+P+R +W +I GY + + LF M V P +++ + AC
Sbjct: 181 LPVRTPVTWNTVITGYAQIGCGGVALELFDRMGIEG------VRPDRFVLASAVSACSAL 234
Query: 131 MNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKI 190
+E G+Q+HG ++ + + S+ LI+ Y K L A +F ++ N V WT I
Sbjct: 235 GFLEGGRQIHGYAYRSATETDTSVINVLIDLYCKCSRLSAARKLFDCMEYRNLVSWTTMI 294
Query: 191 VNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGL 250
+ + F M + + + + +S+L +CG + GRQ+HA+++K L
Sbjct: 295 SGYMQNSFNAEAITMFWNMTQAGWQPDGFACTSILNSCGSLAAIWQ-GRQIHAHVIKADL 353
Query: 251 ESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLY 310
E+DEYV+ L+DMY KC L +A VF+ + + I S+NAM+ GY +N EA
Sbjct: 354 EADEYVKNALIDMYAKCEHLTEARAVFDALAEDDAI-SYNAMIEGYSKNRDLAEAVNIFQ 412
Query: 311 LMK 313
M+
Sbjct: 413 RMR 415
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 79/291 (27%), Positives = 133/291 (45%), Gaps = 13/291 (4%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
+N L+ ++ C +L AR+LFD M R+ SW MI GY+ + E IT+F M +
Sbjct: 259 INVLIDLYCKCSRLSAARKLFDCMEYRNLVSWTTMISGYMQNSFNAEAITMFWNMTQAGW 318
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+ +L +C + G+Q+H + K + + +LI+ Y K L
Sbjct: 319 QP-----DGFACTSILNSCGSLAAIWQGRQIHAHVIKADLEADEYVKNALIDMYAKCEHL 373
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+A VF L + + + A I + + N F+ M ++ + TF S+L
Sbjct: 374 TEARAVFDALAEDDAISYNAMIEGYSKNRDLAEAVNIFQRMRFFSLRPSLLTFVSLL--- 430
Query: 229 GGVDDDG---NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
GV +Q+H I+K G D Y L+D+Y KC L+ DA+ VF ++ K+
Sbjct: 431 -GVSSSQLAIELSKQIHGLIIKSGTSLDLYAASALIDVYSKCSLVNDAKTVFNML-HYKD 488
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+ WN+M+ G+ +N EA K + SG+ E L S++++
Sbjct: 489 MVIWNSMIFGHAQNEQGEEAIKLFNQLLLSGMAPNEFTFVALVTVASTLAS 539
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 58/246 (23%), Positives = 108/246 (43%), Gaps = 13/246 (5%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ ++ C ++ A+ +F+ + +D W MI G+ +E I LF +++
Sbjct: 464 LIDVYSKCSLVNDAKTVFNMLHYKDMVIWNSMIFGHAQNEQGEEAIKLFNQLLLSGMAPN 523
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
F A + V A +M G+Q H + K G + ++ +LI+ Y K +++
Sbjct: 524 EFTFVALVTVASTLA-----SMFHGQQFHAWIIKAGVDNDPHVSNALIDMYAKCGFIKEG 578
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--- 228
+F + + W + I + GH + F+ MG ++ N TF VL AC
Sbjct: 579 RMLFESTCGEDVICWNSMITTYAQHGHAEEALQVFRLMGEAEVEPNYVTFVGVLSACAHA 638
Query: 229 GGVDDDGNCGRQMHANI-VKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
G V + N M +N ++ G+E +V+++G+ L A+ E + K A
Sbjct: 639 GFVGEGLNHFNSMKSNYDIEPGIEH----YASVVNLFGRSGKLHAAKEFIERMPIKPAAA 694
Query: 288 SWNAML 293
W ++L
Sbjct: 695 VWRSLL 700
>gi|297738048|emb|CBI27249.3| unnamed protein product [Vitis vinifera]
Length = 707
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 100/329 (30%), Positives = 165/329 (50%), Gaps = 10/329 (3%)
Query: 12 MYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDE 71
+++ ++K C+ +++ +L I K + P L L+ M+ C +++ +R++FDE
Sbjct: 187 VFSIVLKACSELRETDEGRKLHCQIVKVGS--PDSFVLTGLVDMYAKCREVEDSRRVFDE 244
Query: 72 MPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTM 131
+ R+ W MIVGYV +E + LF M ++G L+ + + ++ AC
Sbjct: 245 ILDRNVVCWTSMIVGYVQNDCLKEGLVLFNRM---REG--LVEGNQYTLGSLVTACTKLG 299
Query: 132 NMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIV 191
+ GK VHG + K G N L L++ Y K + DA VF +L + V WTA IV
Sbjct: 300 ALHQGKWVHGYVIKSGFDLNSFLVTPLLDLYFKCGDIRDAFSVFDELSTIDLVSWTAMIV 359
Query: 192 NNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLE 251
+ G+ + F + + + N+ T SSVL AC N GR +H +K+G E
Sbjct: 360 GYAQRGYPREALKLFTDERWKDLLPNTVTTSSVLSACAQT-GSLNMGRSVHCLGIKLGSE 418
Query: 252 SDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYL 311
D + LVDMY KC ++ DA VFE + DK IA WN+++ GY +NG EA +
Sbjct: 419 -DATFENALVDMYAKCHMIGDARYVFETVFDKDVIA-WNSIISGYTQNGYAYEALELFDQ 476
Query: 312 MKASGIQIQESLINDLRIACSSISASKIN 340
M++ + + + AC+S+ A ++
Sbjct: 477 MRSDSVYPDAITLVSVLSACASVGAYRVG 505
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/264 (29%), Positives = 132/264 (50%), Gaps = 7/264 (2%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
LL +L+ ++ S G ++ AR +FD + D SW VMI Y Y E + + ++
Sbjct: 118 LLCETKLVSLYGSFGHVECARLMFDRIRNPDLYSWKVMIRWYFLNDSYSEIVQFYNTRLR 177
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
+ L + + VLKAC + G+++H + K+GS + LTG L++ Y K
Sbjct: 178 K----CLNEYDNVVFSIVLKACSELRETDEGRKLHCQIVKVGSPDSFVLTG-LVDMYAKC 232
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
R +ED+ VF ++ N V WT+ IV + + F M ++ N YT S++
Sbjct: 233 REVEDSRRVFDEILDRNVVCWTSMIVGYVQNDCLKEGLVLFNRMREGLVEGNQYTLGSLV 292
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
AC + G+ +H ++K G + + ++ L+D+Y KC +RDA VF+ + +
Sbjct: 293 TACTKLGALHQ-GKWVHGYVIKSGFDLNSFLVTPLLDLYFKCGDIRDAFSVFDEL-STID 350
Query: 286 IASWNAMLVGYIRNGLYVEATKFL 309
+ SW AM+VGY + G EA K
Sbjct: 351 LVSWTAMIVGYAQRGYPREALKLF 374
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 106/205 (51%), Gaps = 12/205 (5%)
Query: 137 KQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCRE 196
+++H LL G S ++ L++ YG F +E A +F +++ + W I R
Sbjct: 103 RKIHALLVVHGLSEDLLCETKLVSLYGSFGHVECARLMFDRIRNPDLYSWKVMI----RW 158
Query: 197 GHFHQVFNDFKEMGRERIKK--NSY---TFSSVLKACGGVDDDGNCGRQMHANIVKIGLE 251
+ +++ + R++K N Y FS VLKAC + + GR++H IVK+G
Sbjct: 159 YFLNDSYSEIVQFYNTRLRKCLNEYDNVVFSIVLKACSELRETDE-GRKLHCQIVKVG-S 216
Query: 252 SDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYL 311
D +V GLVDMY KCR + D+ RVF+ I+D +N+ W +M+VGY++N E
Sbjct: 217 PDSFVLTGLVDMYAKCREVEDSRRVFDEILD-RNVVCWTSMIVGYVQNDCLKEGLVLFNR 275
Query: 312 MKASGIQIQESLINDLRIACSSISA 336
M+ ++ + + L AC+ + A
Sbjct: 276 MREGLVEGNQYTLGSLVTACTKLGA 300
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 53/119 (44%), Gaps = 13/119 (10%)
Query: 48 FLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRK 107
F N L+ M+ C + AR +F+ + +D +W +I GY E + LF +M
Sbjct: 422 FENALVDMYAKCHMIGDARYVFETVFDKDVIAWNSIISGYTQNGYAYEALELFDQMRSDS 481
Query: 108 KGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLG------SSRNISLTGSLI 159
V+P A +V VL AC +G +HG K G SR++ L G ++
Sbjct: 482 ------VYPDAITLVSVLSACASVGAYRVGSSLHGYAIKAGLLSGRDCSRSLELFGDML 534
>gi|224066771|ref|XP_002302207.1| predicted protein [Populus trichocarpa]
gi|222843933|gb|EEE81480.1| predicted protein [Populus trichocarpa]
Length = 709
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 93/322 (28%), Positives = 150/322 (46%), Gaps = 36/322 (11%)
Query: 44 PTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEM 103
P LNR + + C L+ A++LFDEMP RD SW MI + ++ ++ F +M
Sbjct: 90 PPTFLLNRAIDTYGKCRCLEDAKELFDEMPQRDGGSWNAMIRACLQCVRPEKALSYFGDM 149
Query: 104 MKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYG 163
K+ + F + L+AC + + L +Q+HGL+ K G N+ + SL++ YG
Sbjct: 150 HKQGVYANEVTFSS-----ALRACGDVLELCLSRQIHGLIVKYGFCGNVIVGSSLVDVYG 204
Query: 164 KFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSS 223
K + ++ +F +++ N V W + G ++ F +M R +++ SYTFS+
Sbjct: 205 KCGAMSESRRIFDEIENPNNVTWNIIVRRYLEVGDENEAVVMFFKMFRAKLRPLSYTFSN 264
Query: 224 VLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELI--- 280
L AC + G Q+H KI E +E V L+DMY KC + A RVF+L
Sbjct: 265 ALVACSDMRAVKE-GMQIHGVATKINFEEEEVVLSSLIDMYVKCGEIESARRVFDLPGSR 323
Query: 281 ---------------------------VDKKNIASWNAMLVGYIRNGLYVEATKFLYLMK 313
+ ++N+ S+NA+L GYIR+ + EA F+YLM
Sbjct: 324 DLISWTSMVSAYAMSGRMREARELFDEMPERNMVSYNALLAGYIRSLQWEEALDFVYLMC 383
Query: 314 ASGIQIQESLINDLRIACSSIS 335
+ I + CS +S
Sbjct: 384 RTTENIDHITFQLMLNVCSGLS 405
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 85/329 (25%), Positives = 153/329 (46%), Gaps = 36/329 (10%)
Query: 33 LNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVAD 92
++ + ++N + + L+ L+ M+V CG++++AR++FD RD SW M+ Y
Sbjct: 281 IHGVATKINFEEEEVVLSSLIDMYVKCGEIESARRVFDLPGSRDLISWTSMVSAYAMSGR 340
Query: 93 YQECITLFAEMMKRKKGHMLLVFPAWI-------------IVC-------------VLKA 126
+E LF EM +R + +I ++C +L
Sbjct: 341 MREARELFDEMPERNMVSYNALLAGYIRSLQWEEALDFVYLMCRTTENIDHITFQLMLNV 400
Query: 127 CVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR-HNTVV 185
C ++++GKQVHG +++ G N + +L++ Y K L A F Q+K+ ++V
Sbjct: 401 CSGLSDVDMGKQVHGFIYRHGWLSNTVIGNALLDMYCKCGNLRSAGVWFHQMKQSRDSVS 460
Query: 186 WTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG---GVDDDGNCGRQMH 242
W + + R Q + F+EM E K + + F+++L AC +D G+Q+H
Sbjct: 461 WNVLLTSYARRQMSEQAMSIFREMQWE-TKPHKFIFATLLAACANTFALDQ----GKQIH 515
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
+++ G + D + L+DMY KCR L A VF DK+++ WN+M++G G
Sbjct: 516 GFMIRNGYDIDTVIAGALLDMYSKCRCLEYALIVFRE-ADKRDLVLWNSMILGCCHLGRG 574
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIAC 331
A + M+ G + + +AC
Sbjct: 575 KLALRLFGFMEEEGTKPDNVTFQGILLAC 603
>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Glycine max]
Length = 858
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 97/342 (28%), Positives = 166/342 (48%), Gaps = 38/342 (11%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLF------LNRLLLMHVSCGQLDTAR 66
+ ++K C+ ++D LN RK + F N L++M+ CG LD +R
Sbjct: 85 FPSVLKACSMKRD-------LNMGRKVHGMAVVTGFESDGFVANTLVVMYAKCGLLDDSR 137
Query: 67 QLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCVLK 125
+LF + R+ SW + YV E + LF EM++ + P + I +L
Sbjct: 138 RLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSG------IMPNEFSISIILN 191
Query: 126 ACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVV 185
AC +LG+++HGL+ K+G + +L++ Y K +E A VF + + V
Sbjct: 192 ACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIAHPDVVS 251
Query: 186 WTAKIVNNCREGHFHQVFND--------FKEMGRERIKKNSYTFSSVLKACGGVDDDGNC 237
W A I+ C V +D EM + N +T SS LKAC +
Sbjct: 252 WNA-IIAGC-------VLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFK-EL 302
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYI 297
GRQ+H++++K+ SD + GLVDMY KC ++ DA R ++ + KK+I +WNA++ GY
Sbjct: 303 GRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSM-PKKDIIAWNALISGYS 361
Query: 298 RNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKI 339
+ G +++A M + I ++ ++ + + +S+ A K+
Sbjct: 362 QCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKV 403
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 77/281 (27%), Positives = 138/281 (49%), Gaps = 7/281 (2%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ C +D AR+ +D MP +D +W +I GY D+ + ++LF++M
Sbjct: 325 LVDMYSKCEMMDDARRAYDSMPKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSED---- 380
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+ F + VLK+ +++ KQ+H + K G + + SL++ YGK +++A
Sbjct: 381 -IDFNQTTLSTVLKSVASLQAIKVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEA 439
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
+F + + V +T+ I + G + + +M IK + + SS+L AC +
Sbjct: 440 SKIFEERTWEDLVAYTSMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACANL 499
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
G+Q+H + +K G D + LV+MY KC + DA+R F I ++ I SW+A
Sbjct: 500 SAYEQ-GKQLHVHAIKFGFMCDIFASNSLVNMYAKCGSIEDADRAFSEIPNR-GIVSWSA 557
Query: 292 MLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
M+ GY ++G EA + M G+ + + AC+
Sbjct: 558 MIGGYAQHGHGKEALRLFNQMLRDGVPPNHITLVSVLCACN 598
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 83/285 (29%), Positives = 139/285 (48%), Gaps = 7/285 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ ++ C + AR+L DE D SW+ ++ GYV +E + +F EM
Sbjct: 20 NHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNGFVEEALLVFNEMCLLGVK 79
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
FP+ VLKAC ++ +G++VHG+ G + + +L+ Y K L+
Sbjct: 80 CNEFTFPS-----VLKACSMKRDLNMGRKVHGMAVVTGFESDGFVANTLVVMYAKCGLLD 134
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
D+ +F + N V W A + + FKEM R I N ++ S +L AC
Sbjct: 135 DSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMPNEFSISIILNACA 194
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
G+ +G+ GR++H ++K+GL+ D++ LVDMY K + A VF+ I ++ SW
Sbjct: 195 GL-QEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIA-HPDVVSW 252
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
NA++ G + + A L MK SG + ++ AC+++
Sbjct: 253 NAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAM 297
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 77/287 (26%), Positives = 137/287 (47%), Gaps = 7/287 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ G+++ A +F ++ D SW +I G V +C L ++ KG
Sbjct: 222 NALVDMYSKAGEIEGAVAVFQDIAHPDVVSWNAIIAGCV----LHDCNDLALMLLDEMKG 277
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ + LKAC ELG+Q+H L K+ + ++ L++ Y K ++
Sbjct: 278 SGTRP-NMFTLSSALKACAAMGFKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMD 336
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
DA + + + + + W A I + G + F +M E I N T S+VLK+
Sbjct: 337 DARRAYDSMPKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVA 396
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ C +Q+H +K G+ SD YV L+D YGKC + +A ++FE +++ ++
Sbjct: 397 SLQAIKVC-KQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERT-WEDLVAY 454
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+M+ Y + G EA K M+ + I+ + + L AC+++SA
Sbjct: 455 TSMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACANLSA 501
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 101/197 (51%), Gaps = 2/197 (1%)
Query: 138 QVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREG 197
++H L K G SR+ SL L+ Y K R A + + + V W++ + + G
Sbjct: 2 ELHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNG 61
Query: 198 HFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQ 257
+ F EM +K N +TF SVLKAC + D N GR++H V G ESD +V
Sbjct: 62 FVEEALLVFNEMCLLGVKCNEFTFPSVLKAC-SMKRDLNMGRKVHGMAVVTGFESDGFVA 120
Query: 258 CGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGI 317
LV MY KC LL D+ R+F IV+ +N+ SWNA+ Y+++ L EA M SGI
Sbjct: 121 NTLVVMYAKCGLLDDSRRLFGGIVE-RNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGI 179
Query: 318 QIQESLINDLRIACSSI 334
E I+ + AC+ +
Sbjct: 180 MPNEFSISIILNACAGL 196
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 74/266 (27%), Positives = 121/266 (45%), Gaps = 15/266 (5%)
Query: 33 LNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVAD 92
++ I + I +N LL + C +D A ++F+E D ++ MI Y D
Sbjct: 407 IHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVAYTSMITAYSQYGD 466
Query: 93 YQECITLFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRN 151
+E + L+ +M + P +I +L AC E GKQ+H K G +
Sbjct: 467 GEEALKLYLQMQDAD------IKPDPFICSSLLNACANLSAYEQGKQLHVHAIKFGFMCD 520
Query: 152 ISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGR 211
I + SL+N Y K +EDAD FS++ V W+A I + GH + F +M R
Sbjct: 521 IFASNSLVNMYAKCGSIEDADRAFSEIPNRGIVSWSAMIGGYAQHGHGKEALRLFNQMLR 580
Query: 212 ERIKKNSYTFSSVLKACGGVDDDG--NCGRQMHANI-VKIGLE-SDEYVQCGLVDMYGKC 267
+ + N T SVL AC + G N G+Q + V G++ + E+ C ++D+ G+
Sbjct: 581 DGVPPNHITLVSVLCAC---NHAGLVNEGKQYFEKMEVMFGIKPTQEHYAC-MIDLLGRS 636
Query: 268 RLLRDAERVFELIVDKKNIASWNAML 293
L +A + I + + W A+L
Sbjct: 637 GKLNEAVELVNSIPFEADGFVWGALL 662
>gi|449523219|ref|XP_004168621.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33170-like [Cucumis sativus]
Length = 755
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 88/292 (30%), Positives = 154/292 (52%), Gaps = 10/292 (3%)
Query: 8 ITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQ 67
I + Y L++EC + + A + HI K L + L+ ++ CG +++A +
Sbjct: 62 IESSYYFPLLQECIDRNLATEARMIHGHIVK-TGFHEDLFVMTFLVNVYSKCGVMESAHK 120
Query: 68 LFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPA-WIIVCVLKA 126
+FD +P R+ N+W ++ GYV + + LF +M++ +P+ + + VL A
Sbjct: 121 VFDNLPRRNVNAWTTLLTGYVQNSHPLLALQLFIKMLEAG------AYPSNYTLGIVLNA 174
Query: 127 CVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVW 186
C ++E GKQVH L K + S+ SL +FY KFR LE A F +K + + W
Sbjct: 175 CSSLQSIEFGKQVHAYLIKYHIDFDTSIGNSLSSFYSKFRRLEFAIKAFKIIKEKDVISW 234
Query: 187 TAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIV 246
T+ I + C G + + F +M + +K N YT +SVL AC V + G Q+H+ +
Sbjct: 235 TSVISSCCDNGQAARSLSFFMDMLSDGMKPNEYTLTSVLSAC-CVMLTLDLGAQIHSLSI 293
Query: 247 KIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIR 298
K+G S ++ ++ +Y KC L +A+++FE + + N+ +WNAM+ G+ +
Sbjct: 294 KLGYGSSILIKNSIMYLYLKCGWLIEAQKLFEGM-ETLNLVTWNAMIAGHAK 344
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 75/283 (26%), Positives = 129/283 (45%), Gaps = 18/283 (6%)
Query: 61 QLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWII 120
+L+ A + F + +D SW +I D ++ F +M+ + + +
Sbjct: 215 RLEFAIKAFKIIKEKDVISWTSVISSCCDNGQAARSLSFFMDMLSDG-----MKPNEYTL 269
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
VL AC + ++LG Q+H L KLG +I + S++ Y K L +A +F ++
Sbjct: 270 TSVLSACCVMLTLDLGAQIHSLSIKLGYGSSILIKNSIMYLYLKCGWLIEAQKLFEGMET 329
Query: 181 HNTVVWTAKIVNNCREGHFHQ-----------VFNDFKEMGRERIKKNSYTFSSVLKACG 229
N V W A I + + + F+++ R +K + +TFSSVL C
Sbjct: 330 LNLVTWNAMIAGHAKMMDLAEDDVAAHKSGSTALAMFQKLYRSGMKPDLFTFSSVLSVCS 389
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ G Q+H I+K G+ +D V LV MY KC + A + F L + + + SW
Sbjct: 390 NLVALEQ-GEQIHGQIIKSGVLADVVVGTALVSMYNKCGSIDKASKAF-LEMPSRTMISW 447
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+M+ G+ R+GL +A + M+ GI+ + + ACS
Sbjct: 448 TSMITGFARHGLSQQALQLFEDMRLVGIKPNQVTFVGVLSACS 490
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 75/297 (25%), Positives = 133/297 (44%), Gaps = 23/297 (7%)
Query: 45 TLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYV--------DVADYQEC 96
++L N ++ +++ CG L A++LF+ M + +W MI G+ DVA ++
Sbjct: 300 SILIKNSIMYLYLKCGWLIEAQKLFEGMETLNLVTWNAMIAGHAKMMDLAEDDVAAHKSG 359
Query: 97 ITLFAEMMKRKKGHM---LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNIS 153
T A K + M L F + VL C + +E G+Q+HG + K G ++
Sbjct: 360 STALAMFQKLYRSGMKPDLFTFSS-----VLSVCSNLVALEQGEQIHGQIIKSGVLADVV 414
Query: 154 LTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRER 213
+ +L++ Y K ++ A F ++ + WT+ I R G Q F++M
Sbjct: 415 VGTALVSMYNKCGSIDKASKAFLEMPSRTMISWTSMITGFARHGLSQQALQLFEDMRLVG 474
Query: 214 IKKNSYTFSSVLKAC--GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLR 271
IK N TF VL AC G+ D+ ++ I D + C L+DMY + +
Sbjct: 475 IKPNQVTFVGVLSACSHAGLADEALYYFELMQKQYNIKPVMDHFA-C-LIDMYLRLGRVE 532
Query: 272 DAERVFELIVDKKNIASWNAMLVG---YIRNGLYVEATKFLYLMKASGIQIQESLIN 325
+A V + + N W+ ++ G + ++ L A + L +K ++ SL+N
Sbjct: 533 EAFDVVHKMNFEPNETIWSMLIAGCRSHGKSDLGFYAAEQLLKLKPKDVETYVSLLN 589
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 65/122 (53%), Gaps = 5/122 (4%)
Query: 216 KNSYTFSSVLKACGGVDDD-GNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAE 274
++SY F +L+ C +D + R +H +IVK G D +V LV++Y KC ++ A
Sbjct: 63 ESSYYFP-LLQEC--IDRNLATEARMIHGHIVKTGFHEDLFVMTFLVNVYSKCGVMESAH 119
Query: 275 RVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
+VF+ + ++N+ +W +L GY++N + A + M +G + + ACSS+
Sbjct: 120 KVFDNL-PRRNVNAWTTLLTGYVQNSHPLLALQLFIKMLEAGAYPSNYTLGIVLNACSSL 178
Query: 335 SA 336
+
Sbjct: 179 QS 180
>gi|449461407|ref|XP_004148433.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33170-like [Cucumis sativus]
Length = 749
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 88/292 (30%), Positives = 154/292 (52%), Gaps = 10/292 (3%)
Query: 8 ITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQ 67
I + Y L++EC + + A + HI K L + L+ ++ CG +++A +
Sbjct: 56 IESSYYFPLLQECIDRNLATEARMIHGHIVK-TGFHEDLFVMTFLVNVYSKCGVMESAHK 114
Query: 68 LFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPA-WIIVCVLKA 126
+FD +P R+ N+W ++ GYV + + LF +M++ +P+ + + VL A
Sbjct: 115 VFDNLPRRNVNAWTTLLTGYVQNSHPLLALQLFIKMLEAG------AYPSNYTLGIVLNA 168
Query: 127 CVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVW 186
C ++E GKQVH L K + S+ SL +FY KFR LE A F +K + + W
Sbjct: 169 CSSLQSIEFGKQVHAYLIKYHIDFDTSIGNSLSSFYSKFRRLEFAIKAFKIIKEKDVISW 228
Query: 187 TAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIV 246
T+ I + C G + + F +M + +K N YT +SVL AC V + G Q+H+ +
Sbjct: 229 TSVISSCCDNGQAARSLSFFMDMLSDGMKPNEYTLTSVLSAC-CVMLTLDLGAQIHSLSI 287
Query: 247 KIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIR 298
K+G S ++ ++ +Y KC L +A+++FE + + N+ +WNAM+ G+ +
Sbjct: 288 KLGYGSSILIKNSIMYLYLKCGWLIEAQKLFEGM-ETLNLVTWNAMIAGHAK 338
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 75/283 (26%), Positives = 129/283 (45%), Gaps = 18/283 (6%)
Query: 61 QLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWII 120
+L+ A + F + +D SW +I D ++ F +M+ + + +
Sbjct: 209 RLEFAIKAFKIIKEKDVISWTSVISSCCDNGQAARSLSFFMDMLSDG-----MKPNEYTL 263
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
VL AC + ++LG Q+H L KLG +I + S++ Y K L +A +F ++
Sbjct: 264 TSVLSACCVMLTLDLGAQIHSLSIKLGYGSSILIKNSIMYLYLKCGWLIEAQKLFEGMET 323
Query: 181 HNTVVWTAKIVNNCREGHFHQ-----------VFNDFKEMGRERIKKNSYTFSSVLKACG 229
N V W A I + + + F+++ R +K + +TFSSVL C
Sbjct: 324 LNLVTWNAMIAGHAKMMDLAEDDVAAHKSGSTALAMFQKLYRSGMKPDLFTFSSVLSVCS 383
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ G Q+H I+K G+ +D V LV MY KC + A + F L + + + SW
Sbjct: 384 NLVALEQ-GEQIHGQIIKSGVLADVVVGTALVSMYNKCGSIDKASKAF-LEMPSRTMISW 441
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+M+ G+ R+GL +A + M+ GI+ + + ACS
Sbjct: 442 TSMITGFARHGLSQQALQLFEDMRLVGIKPNQVTFVGVLSACS 484
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 75/297 (25%), Positives = 133/297 (44%), Gaps = 23/297 (7%)
Query: 45 TLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYV--------DVADYQEC 96
++L N ++ +++ CG L A++LF+ M + +W MI G+ DVA ++
Sbjct: 294 SILIKNSIMYLYLKCGWLIEAQKLFEGMETLNLVTWNAMIAGHAKMMDLAEDDVAAHKSG 353
Query: 97 ITLFAEMMKRKKGHM---LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNIS 153
T A K + M L F + VL C + +E G+Q+HG + K G ++
Sbjct: 354 STALAMFQKLYRSGMKPDLFTFSS-----VLSVCSNLVALEQGEQIHGQIIKSGVLADVV 408
Query: 154 LTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRER 213
+ +L++ Y K ++ A F ++ + WT+ I R G Q F++M
Sbjct: 409 VGTALVSMYNKCGSIDKASKAFLEMPSRTMISWTSMITGFARHGLSQQALQLFEDMRLVG 468
Query: 214 IKKNSYTFSSVLKAC--GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLR 271
IK N TF VL AC G+ D+ ++ I D + C L+DMY + +
Sbjct: 469 IKPNQVTFVGVLSACSHAGLADEALYYFELMQKQYNIKPVMDHFA-C-LIDMYLRLGRVE 526
Query: 272 DAERVFELIVDKKNIASWNAMLVG---YIRNGLYVEATKFLYLMKASGIQIQESLIN 325
+A V + + N W+ ++ G + ++ L A + L +K ++ SL+N
Sbjct: 527 EAFDVVHKMNFEPNETIWSMLIAGCRSHGKSDLGFYAAEQLLKLKPKDVETYVSLLN 583
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 65/122 (53%), Gaps = 5/122 (4%)
Query: 216 KNSYTFSSVLKACGGVDDD-GNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAE 274
++SY F +L+ C +D + R +H +IVK G D +V LV++Y KC ++ A
Sbjct: 57 ESSYYFP-LLQEC--IDRNLATEARMIHGHIVKTGFHEDLFVMTFLVNVYSKCGVMESAH 113
Query: 275 RVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
+VF+ + ++N+ +W +L GY++N + A + M +G + + ACSS+
Sbjct: 114 KVFDNL-PRRNVNAWTTLLTGYVQNSHPLLALQLFIKMLEAGAYPSNYTLGIVLNACSSL 172
Query: 335 SA 336
+
Sbjct: 173 QS 174
>gi|218200986|gb|EEC83413.1| hypothetical protein OsI_28873 [Oryza sativa Indica Group]
Length = 481
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 94/304 (30%), Positives = 143/304 (47%), Gaps = 9/304 (2%)
Query: 35 HIRKRVNIKPTLLFLNRLLLMHVS-CGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADY 93
H R V +FL LLL S G+L AR LFD MP R+ SW +I Y
Sbjct: 57 HARATVAGGLDDVFLTNLLLRGYSNLGRLRDARHLFDRMPHRNLVSWGSVISMYTQHGRD 116
Query: 94 QECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNIS 153
I+LFA K V +++ VL+AC + + LG+QVHG+ KL N+
Sbjct: 117 DCAISLFAAFQKAS----CEVPNEFLLASVLRACTQSKAVSLGEQVHGIAVKLDLDANVY 172
Query: 154 LTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRER 213
+ +LIN Y K C+++A VF L V W I + G F MG E
Sbjct: 173 VGTALINLYAKLGCMDEAMLVFHALPVRTPVTWNTVITEYAQIGCGGVALELFDRMGIEG 232
Query: 214 IKKNSYTFSSVLKACGGVDD-DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRD 272
++ + + +S + AC + +G GRQ+H + E+D V L+D+Y KC L
Sbjct: 233 VRPDRFVLASAVSACSALGFLEG--GRQIHGYAYRSATETDTSVINVLIDLYCKCSRLSA 290
Query: 273 AERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
A ++F+ + + +N+ SW M+ GY++N EA + M +G Q + +C
Sbjct: 291 ARKLFDCM-EYRNLVSWTTMISGYMQNSFNAEAITMFWNMTQAGWQPDGFACTSILNSCG 349
Query: 333 SISA 336
S++A
Sbjct: 350 SLAA 353
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 79/299 (26%), Positives = 143/299 (47%), Gaps = 10/299 (3%)
Query: 16 LIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLR 75
+++ CT Q + E ++ I ++++ + L+ ++ G +D A +F +P+R
Sbjct: 142 VLRACT-QSKAVSLGEQVHGIAVKLDLDANVYVGTALINLYAKLGCMDEAMLVFHALPVR 200
Query: 76 DFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTMNME 134
+W +I Y + + LF M V P +++ + AC +E
Sbjct: 201 TPVTWNTVITEYAQIGCGGVALELFDRMGIEG------VRPDRFVLASAVSACSALGFLE 254
Query: 135 LGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNC 194
G+Q+HG ++ + + S+ LI+ Y K L A +F ++ N V WT I
Sbjct: 255 GGRQIHGYAYRSATETDTSVINVLIDLYCKCSRLSAARKLFDCMEYRNLVSWTTMISGYM 314
Query: 195 REGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDE 254
+ + F M + + + + +S+L +CG + GRQ+HA+++K LE+DE
Sbjct: 315 QNSFNAEAITMFWNMTQAGWQPDGFACTSILNSCGSLAAIWQ-GRQIHAHVIKADLEADE 373
Query: 255 YVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMK 313
YV+ L+DMY KC L +A VF+ + + I S+NAM+ GY +N EA + M+
Sbjct: 374 YVKNALIDMYAKCEHLTEARAVFDALAEDDAI-SYNAMIEGYSKNRDLAEAVNIFHRMR 431
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 87/202 (43%), Gaps = 12/202 (5%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
+N L+ ++ C +L AR+LFD M R+ SW MI GY+ + E IT+F M +
Sbjct: 275 INVLIDLYCKCSRLSAARKLFDCMEYRNLVSWTTMISGYMQNSFNAEAITMFWNMTQAGW 334
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+ +L +C + G+Q+H + K + + +LI+ Y K L
Sbjct: 335 QP-----DGFACTSILNSCGSLAAIWQGRQIHAHVIKADLEADEYVKNALIDMYAKCEHL 389
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+A VF L + + + A I + + N F M ++ + TF S+L
Sbjct: 390 TEARAVFDALAEDDAISYNAMIEGYSKNRDLAEAVNIFHRMRFFSLRPSLLTFVSLL--- 446
Query: 229 GGVDDDG---NCGRQMHANIVK 247
GV +Q+H I+K
Sbjct: 447 -GVSSSQLAIELSKQIHGLIIK 467
>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Vitis vinifera]
Length = 989
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 91/326 (27%), Positives = 152/326 (46%), Gaps = 16/326 (4%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLF----LNRLLLMHVSCGQLDTARQL 68
Y +++ CT S GA +L I +V IK F + L+ M+ G+LDTAR +
Sbjct: 418 YPSILRTCT----SLGALDLGEQIHTQV-IKSGFQFNVYVCSVLIDMYAKHGELDTARGI 472
Query: 69 FDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACV 128
+ D SW MI GY + E + LF EM + + F + + AC
Sbjct: 473 LQRLREEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSS-----AISACA 527
Query: 129 CTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTA 188
+ G+Q+H + G S ++S+ +L++ Y + +DA F ++ + + W A
Sbjct: 528 GIQALNQGQQIHAQSYISGYSEDLSIGNALVSLYARCGRAQDAYLAFEKIDAKDNISWNA 587
Query: 189 KIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKI 248
I + GH + F +M + ++ N +TF S + A + G+Q+HA ++K
Sbjct: 588 LISGFAQSGHCEEALQVFSQMNQAGVEANLFTFGSAVSATANTANIKQ-GKQIHAMMIKT 646
Query: 249 GLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKF 308
G +S+ L+ +Y KC + DA+R F + +KN+ SWNAM+ GY ++G EA
Sbjct: 647 GYDSETEASNVLITLYSKCGSIEDAKREF-FEMPEKNVVSWNAMITGYSQHGYGSEAVSL 705
Query: 309 LYLMKASGIQIQESLINDLRIACSSI 334
MK G+ + ACS +
Sbjct: 706 FEEMKQLGLMPNHVTFVGVLSACSHV 731
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 88/335 (26%), Positives = 160/335 (47%), Gaps = 17/335 (5%)
Query: 8 ITTD--MYTCLIKECTFQKDSAGAFELLNHIRKRV---NIKPTLLFLNRLLLMHVSCGQL 62
+T D + +++ C+ K F++ I ++ + L N L+ ++ G +
Sbjct: 107 VTPDESTFASVLRACSGGK---APFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHV 163
Query: 63 DTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIV 121
D A+ +F+ + L+D SW MI G E I LF +M H V P ++
Sbjct: 164 DLAKLVFERLFLKDSVSWVAMISGLSQNGREDEAILLFCQM------HKSAVIPTPYVFS 217
Query: 122 CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH 181
VL AC +LG+Q+HG + K G S + +L+ Y ++ L A+ +FS++ R
Sbjct: 218 SVLSACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRR 277
Query: 182 NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQM 241
+ + + + I + G + F++M + +K + T +S+L AC V G G+Q+
Sbjct: 278 DRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASV-GAGYKGKQL 336
Query: 242 HANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGL 301
H+ ++K+G+ SD ++ L+D+Y KC + A F L + +N+ WN MLV Y + G
Sbjct: 337 HSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYF-LTTETENVVLWNVMLVAYGQLGN 395
Query: 302 YVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
E+ M+ G+ + + C+S+ A
Sbjct: 396 LSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGA 430
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 78/280 (27%), Positives = 134/280 (47%), Gaps = 7/280 (2%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
++ + L+ LL ++V C ++TA + F + W VM+V Y + + E
Sbjct: 342 KMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYW 401
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
+F +M +P+ +L+ C ++LG+Q+H + K G N+ + L
Sbjct: 402 IFLQMQIEGLMPNQYTYPS-----ILRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVL 456
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
I+ Y K L+ A + +L+ + V WTA I + F + F+EM + I+ ++
Sbjct: 457 IDMYAKHGELDTARGILQRLREEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDN 516
Query: 219 YTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE 278
FSS + AC G+ N G+Q+HA G D + LV +Y +C +DA FE
Sbjct: 517 IGFSSAISACAGIQAL-NQGQQIHAQSYISGYSEDLSIGNALVSLYARCGRAQDAYLAFE 575
Query: 279 LIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
I K NI SWNA++ G+ ++G EA + M +G++
Sbjct: 576 KIDAKDNI-SWNALISGFAQSGHCEEALQVFSQMNQAGVE 614
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 83/291 (28%), Positives = 139/291 (47%), Gaps = 15/291 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ ++ G L A Q+F +M RD S+ +I G + LF +M
Sbjct: 252 NALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKM------ 305
Query: 110 HMLLVFPAWIIVC-VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+ + P + V +L AC GKQ+H + K+G S ++ + GSL++ Y K +
Sbjct: 306 QLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDI 365
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
E A F + N V+W +V + G+ + + F +M E + N YT+ S+L+ C
Sbjct: 366 ETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTC 425
Query: 229 ---GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
G +D G Q+H ++K G + + YV L+DMY K L A + + + +++
Sbjct: 426 TSLGALD----LGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRL-REED 480
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+ SW AM+ GY ++ L+ EA K M+ GI+ + AC+ I A
Sbjct: 481 VVSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQA 531
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 75/288 (26%), Positives = 137/288 (47%), Gaps = 8/288 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+RL+ ++++ G++D A +LFD++P + + W +I G + + + LF+ M+
Sbjct: 49 SRLIDIYLAHGEVDNAIKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVT 108
Query: 110 HMLLVFPAWIIVCVLKACV-CTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
F + VL+AC ++ +Q+H + G + + LI+ Y K +
Sbjct: 109 PDESTFAS-----VLRACSGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHV 163
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+ A VF +L ++V W A I + G + F +M + + Y FSSVL AC
Sbjct: 164 DLAKLVFERLFLKDSVSWVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSAC 223
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
+ + G Q+H IVK GL S+ +V LV +Y + L AE++F + + I S
Sbjct: 224 TKI-ELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRI-S 281
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+N+++ G + G A + M+ ++ + L AC+S+ A
Sbjct: 282 YNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGA 329
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 112/250 (44%), Gaps = 17/250 (6%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ ++ CG+ A F+++ +D SW +I G+ +E + +F++M +
Sbjct: 555 NALVSLYARCGRAQDAYLAFEKIDAKDNISWNALISGFAQSGHCEEALQVFSQMNQAGVE 614
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
L F + + A T N++ GKQ+H ++ K G + LI Y K +E
Sbjct: 615 ANLFTFGS-----AVSATANTANIKQGKQIHAMMIKTGYDSETEASNVLITLYSKCGSIE 669
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC- 228
DA F ++ N V W A I + G+ + + F+EM + + N TF VL AC
Sbjct: 670 DAKREFFEMPEKNVVSWNAMITGYSQHGYGSEAVSLFEEMKQLGLMPNHVTFVGVLSACS 729
Query: 229 --GGVDDDGNCGRQM---HANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
G V++ + R M H + K E+ C +VD+ G+ LL A E + +
Sbjct: 730 HVGLVNEGLSYFRSMSKEHGLVPK-----PEHYVC-VVDLLGRAALLCCAREFIEEMPIE 783
Query: 284 KNIASWNAML 293
+ W +L
Sbjct: 784 PDAMIWRTLL 793
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 95/217 (43%), Gaps = 1/217 (0%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
+ + C + ++ K++H +FK G L LI+ Y +++A +F + N
Sbjct: 16 LFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVDNAIKLFDDIPSSN 75
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
W I + QV F M E + + TF+SVL+AC G Q+H
Sbjct: 76 VSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRACSGGKAPFQVTEQIH 135
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
A I+ G S V L+D+Y K + A+ VFE + K ++ SW AM+ G +NG
Sbjct: 136 AKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSV-SWVAMISGLSQNGRE 194
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIACSSISASKI 339
EA M S + + + + AC+ I K+
Sbjct: 195 DEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKL 231
>gi|449458534|ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Cucumis sativus]
Length = 989
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 84/284 (29%), Positives = 138/284 (48%), Gaps = 9/284 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M++ G + +L++ M RD SW + G D Y +T+F M++
Sbjct: 454 NALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEG-- 511
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ + + +L +C C ++ G+QVH + K N + +LI+ Y K LE
Sbjct: 512 ---FIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLE 568
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
DAD F++L + WT I N + + N F++M +E +K N +T + L C
Sbjct: 569 DADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCS 628
Query: 230 GVDD-DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
+ +G G+Q+H+ + K G SD +V LVDMY KC + +AE +FE ++ + IA
Sbjct: 629 SLASLEG--GQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEALIRRDTIA- 685
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
WN ++ GY +NG +A +M GI + ACS
Sbjct: 686 WNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACS 729
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 101/325 (31%), Positives = 160/325 (49%), Gaps = 14/325 (4%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
Y+ +++EC K S G + ++ + + I P L+ ++ C AR + +M
Sbjct: 115 YSSMLRECA-SKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKM 173
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN 132
P RD SW +I G V + I LF EM + +G M F + LKAC M
Sbjct: 174 PDRDVVSWTALIQGLVAEGFANDSIYLFQEM--QNEGIMPNEF---TLATGLKACSLCMA 228
Query: 133 MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192
++LGKQ+H FKLG ++ + +L++ Y K +E A +F + N V W +
Sbjct: 229 LDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNG 288
Query: 193 NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLES 252
+ G V F M +K N +T ++VLK C + G+ +H+ I+K G E
Sbjct: 289 YAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQ-GQVIHSLIIKCGYEG 347
Query: 253 DEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLM 312
+E++ CGLVDMY KC L DA VF+ I K +I W+A++ + G E+ K +LM
Sbjct: 348 NEFIGCGLVDMYSKCGLAIDAIGVFKTI-KKPDIVVWSALITCLDQQGQSEESIKLFHLM 406
Query: 313 KASGIQIQESLINDLRIACSSISAS 337
+ + ++L N I CS +SA+
Sbjct: 407 R-----LGDTLPNQYTI-CSLLSAA 425
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/286 (25%), Positives = 134/286 (46%), Gaps = 9/286 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ CG A +F + D W+ +I +E I LF M + G
Sbjct: 355 LVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLM---RLGDT 411
Query: 112 LLVFPAWIIVC-VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
L P +C +L A T N++ G+ +H ++K G +++++ +L+ Y K C+ D
Sbjct: 412 L---PNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHD 468
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
++ + + + W A + G + + F M E N YTF S+L +C
Sbjct: 469 GTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSC 528
Query: 231 VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWN 290
+ D + GRQ+HA+I+K L+ + +V L+DMY KC L DA+ F + +++ +W
Sbjct: 529 L-FDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRL-SVRDLFTWT 586
Query: 291 AMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
++ Y + +A + M+ G++ E + CSS+++
Sbjct: 587 VIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLAS 632
>gi|449491572|ref|XP_004158941.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Cucumis sativus]
Length = 1004
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 84/284 (29%), Positives = 138/284 (48%), Gaps = 9/284 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M++ G + +L++ M RD SW + G D Y +T+F M++
Sbjct: 454 NALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEG-- 511
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ + + +L +C C ++ G+QVH + K N + +LI+ Y K LE
Sbjct: 512 ---FIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLE 568
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
DAD F++L + WT I N + + N F++M +E +K N +T + L C
Sbjct: 569 DADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCS 628
Query: 230 GVDD-DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
+ +G G+Q+H+ + K G SD +V LVDMY KC + +AE +FE ++ + IA
Sbjct: 629 SLASLEG--GQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEALIRRDTIA- 685
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
WN ++ GY +NG +A +M GI + ACS
Sbjct: 686 WNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACS 729
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 101/325 (31%), Positives = 160/325 (49%), Gaps = 14/325 (4%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
Y+ +++EC K S G + ++ + + I P L+ ++ C AR + +M
Sbjct: 115 YSSMLRECA-SKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKM 173
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN 132
P RD SW +I G V + I LF EM + +G M F + LKAC M
Sbjct: 174 PDRDVVSWTALIQGLVAEGFANDSIYLFQEM--QNEGIMPNEF---TLATGLKACSLCMA 228
Query: 133 MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192
++LGKQ+H FKLG ++ + +L++ Y K +E A +F + N V W +
Sbjct: 229 LDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNG 288
Query: 193 NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLES 252
+ G V F M +K N +T ++VLK C + G+ +H+ I+K G E
Sbjct: 289 YAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQ-GQVIHSLIIKCGYEG 347
Query: 253 DEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLM 312
+E++ CGLVDMY KC L DA VF+ I K +I W+A++ + G E+ K +LM
Sbjct: 348 NEFIGCGLVDMYSKCGLAIDAIGVFKTI-KKPDIVVWSALITCLDQQGQSEESIKLFHLM 406
Query: 313 KASGIQIQESLINDLRIACSSISAS 337
+ + ++L N I CS +SA+
Sbjct: 407 R-----LGDTLPNQYTI-CSLLSAA 425
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/286 (25%), Positives = 134/286 (46%), Gaps = 9/286 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ CG A +F + D W+ +I +E I LF M + G
Sbjct: 355 LVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLM---RLGDT 411
Query: 112 LLVFPAWIIVC-VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
L P +C +L A T N++ G+ +H ++K G +++++ +L+ Y K C+ D
Sbjct: 412 L---PNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHD 468
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
++ + + + W A + G + + F M E N YTF S+L +C
Sbjct: 469 GTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSC 528
Query: 231 VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWN 290
+ D + GRQ+HA+I+K L+ + +V L+DMY KC L DA+ F + +++ +W
Sbjct: 529 L-FDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRL-SVRDLFTWT 586
Query: 291 AMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
++ Y + +A + M+ G++ E + CSS+++
Sbjct: 587 VIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLAS 632
>gi|255585601|ref|XP_002533488.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526650|gb|EEF28892.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 939
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 86/300 (28%), Positives = 149/300 (49%), Gaps = 7/300 (2%)
Query: 33 LNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVAD 92
L+ + + ++ + N +L M+ C L A +FDEM RD SW +I + +
Sbjct: 400 LHSLSVKSTLRSNICVANSILDMYGKCEALSEACCMFDEMERRDAVSWNAVIAAHEQNGN 459
Query: 93 YQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNI 152
+E + LFA M++ + + + VLKAC + G ++H + K G +
Sbjct: 460 EEETLNLFASMLRLRMEPDQFTYGS-----VLKACSSQQALNSGMEIHNRIIKSGLGLDS 514
Query: 153 SLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRE 212
+ G+LI+ Y K +E+A + ++++ V W A I H + F EM +
Sbjct: 515 FVGGALIDMYCKCGMIEEAKKIHDRIEQQTMVSWNAIIAGFTLLKHSEDAHSFFYEMLKM 574
Query: 213 RIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRD 272
+K +++T++ VL AC + G G+Q+H I+K+ L SD Y+ LVDMY KC ++D
Sbjct: 575 SVKPDNFTYAIVLDACANLASVG-LGKQIHGQIIKLELHSDVYITSTLVDMYSKCGNMQD 633
Query: 273 AERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+ VFE K+ +WNAM+ GY ++GL EA + M+ ++ + + AC+
Sbjct: 634 SALVFEK-APNKDFVTWNAMICGYAQHGLGEEALGYFERMQLENVRPNHATFVSILRACA 692
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 83/312 (26%), Positives = 146/312 (46%), Gaps = 8/312 (2%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCG 60
M + + ++ +Y + + C +L H K + + L M+ CG
Sbjct: 268 MQKVGIGVSQSIYASVFRSCAGLSALKVGTQLHAHALK-CDFGSDITVGTATLDMYAKCG 326
Query: 61 QLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWII 120
L A+++F+ +P + +IVG V E + F ++K G F +
Sbjct: 327 SLADAQRIFNSLPKHSLQCYNAIIVGCVRNEKGFEALQFFQLLLKSGLG-----FNEISL 381
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
AC G+Q+H L K NI + S+++ YGK L +A +F +++R
Sbjct: 382 SGAFSACASIKGDLDGRQLHSLSVKSTLRSNICVANSILDMYGKCEALSEACCMFDEMER 441
Query: 181 HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQ 240
+ V W A I + + G+ + N F M R R++ + +T+ SVLKAC N G +
Sbjct: 442 RDAVSWNAVIAAHEQNGNEEETLNLFASMLRLRMEPDQFTYGSVLKACSS-QQALNSGME 500
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
+H I+K GL D +V L+DMY KC ++ +A+++ + I +++ + SWNA++ G+
Sbjct: 501 IHNRIIKSGLGLDSFVGGALIDMYCKCGMIEEAKKIHDRI-EQQTMVSWNAIIAGFTLLK 559
Query: 301 LYVEATKFLYLM 312
+A F Y M
Sbjct: 560 HSEDAHSFFYEM 571
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 81/324 (25%), Positives = 153/324 (47%), Gaps = 8/324 (2%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
+ ++K C+ +D ++ I R+ ++ + LL M+ C +LD + ++F E+
Sbjct: 179 FAVVLKACSVLEDGGLGIQVHGLI-VRMGFYKDVVTGSALLDMYAKCKRLDDSLKIFSEI 237
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN 132
P++++ W+ +I G V ++ + LF EM K G I V ++C
Sbjct: 238 PVKNWVCWSAIIAGCVQNDEHILGLELFKEMQKVGIG-----VSQSIYASVFRSCAGLSA 292
Query: 133 MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192
+++G Q+H K +I++ + ++ Y K L DA +F+ L +H+ + A IV
Sbjct: 293 LKVGTQLHAHALKCDFGSDITVGTATLDMYAKCGSLADAQRIFNSLPKHSLQCYNAIIVG 352
Query: 193 NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLES 252
R + F+ + + + N + S AC + D + GRQ+H+ VK L S
Sbjct: 353 CVRNEKGFEALQFFQLLLKSGLGFNEISLSGAFSACASIKGDLD-GRQLHSLSVKSTLRS 411
Query: 253 DEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLM 312
+ V ++DMYGKC L +A +F+ + ++++ SWNA++ + +NG E M
Sbjct: 412 NICVANSILDMYGKCEALSEACCMFDEM-ERRDAVSWNAVIAAHEQNGNEEETLNLFASM 470
Query: 313 KASGIQIQESLINDLRIACSSISA 336
++ + + ACSS A
Sbjct: 471 LRLRMEPDQFTYGSVLKACSSQQA 494
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/284 (25%), Positives = 134/284 (47%), Gaps = 12/284 (4%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
Y ++K C+ Q+ E+ N I K + L+ M+ CG ++ A+++ D +
Sbjct: 482 YGSVLKACSSQQALNSGMEIHNRIIKS-GLGLDSFVGGALIDMYCKCGMIEEAKKIHDRI 540
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN 132
+ SW +I G+ + ++ + F EM+K M + + VL AC +
Sbjct: 541 EQQTMVSWNAIIAGFTLLKHSEDAHSFFYEMLK-----MSVKPDNFTYAIVLDACANLAS 595
Query: 133 MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192
+ LGKQ+HG + KL ++ +T +L++ Y K ++D+ VF + + V W A I
Sbjct: 596 VGLGKQIHGQIIKLELHSDVYITSTLVDMYSKCGNMQDSALVFEKAPNKDFVTWNAMICG 655
Query: 193 NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG--GVDDDGNCGRQMHANIVKIGL 250
+ G + F+ M E ++ N TF S+L+AC G D G +A + + GL
Sbjct: 656 YAQHGLGEEALGYFERMQLENVRPNHATFVSILRACAHMGFIDKGL--HYFNAMLTEYGL 713
Query: 251 ESD-EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
E E+ C ++D+ G+ + +A ++ + + + + W +L
Sbjct: 714 EPQIEHYSC-MIDIIGRSGRISEALKLIQEMPFEADAVIWRTLL 756
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 121/248 (48%), Gaps = 5/248 (2%)
Query: 94 QECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGL-LFKLGSSRNI 152
QEC + + + K+ H ++ +I + C+ M + + +F+ S R++
Sbjct: 51 QEC-SDYNSLKPGKQAHARMIVSGFIPDVYISNCLMKMYLRCSHLNYAYKVFEKMSQRDV 109
Query: 153 SLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGR- 211
++I+ Y + A+ F + + V W + + + G + + F +MGR
Sbjct: 110 ISYNTMISGYADAGEMNLANEFFYDTPKRDVVSWNSMLSGFLQNGECRKSIDVFLDMGRS 169
Query: 212 ERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLR 271
E + + TF+ VLKAC V +DG G Q+H IV++G D L+DMY KC+ L
Sbjct: 170 EEVGFDQTTFAVVLKACS-VLEDGGLGIQVHGLIVRMGFYKDVVTGSALLDMYAKCKRLD 228
Query: 272 DAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
D+ ++F I KN W+A++ G ++N ++ + M+ GI + +S+ + +C
Sbjct: 229 DSLKIFSEI-PVKNWVCWSAIIAGCVQNDEHILGLELFKEMQKVGIGVSQSIYASVFRSC 287
Query: 332 SSISASKI 339
+ +SA K+
Sbjct: 288 AGLSALKV 295
>gi|14165320|gb|AAK55452.1|AC069300_7 putative PPR repeat protein [Oryza sativa Japonica Group]
gi|31433484|gb|AAP54989.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 905
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 88/283 (31%), Positives = 133/283 (46%), Gaps = 7/283 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N +L + G + TA LFD MP D SW ++ GY +QE + LF EM +R
Sbjct: 129 NTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVS 188
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
F +LK+C + LG QVH L K G ++ +L++ YGK R L+
Sbjct: 189 PDRTTF-----AVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLD 243
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
DA F + N V W A I + + + F EM R + + +++S ++C
Sbjct: 244 DALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCA 303
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ N GRQ+HA+ +K SD V +VD+Y K L DA R F + + +
Sbjct: 304 AMSCL-NTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAF-FGLPNHTVETS 361
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
NAM+VG +R GL +EA M S I+ ++ + AC+
Sbjct: 362 NAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACA 404
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/264 (30%), Positives = 130/264 (49%), Gaps = 7/264 (2%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
++ L AR+ F +P + M+VG V E + LF M++ +
Sbjct: 336 VYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSS-----IR 390
Query: 115 FPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFV 174
F + V AC T G+QVH L K G +I + ++++ YGK + L +A +
Sbjct: 391 FDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLI 450
Query: 175 FSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDD 234
F +K+ ++V W A I + GH+ F EM R +K + +T+ SVLKAC +
Sbjct: 451 FQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSL 510
Query: 235 GNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLV 294
G +H ++K GL SD +V +VDMY KC ++ +A+++ + I + + SWNA+L
Sbjct: 511 -EYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRI-GGQQVVSWNAILS 568
Query: 295 GYIRNGLYVEATKFLYLMKASGIQ 318
G+ N EA KF M G++
Sbjct: 569 GFSLNKESEEAQKFFSEMLDMGLK 592
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 80/288 (27%), Positives = 135/288 (46%), Gaps = 13/288 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N +L ++ C L A +F M +D SW +I Y + I F EM++
Sbjct: 432 NAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMK 491
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ + VLKAC ++E G VH + K G + + ++++ Y K ++
Sbjct: 492 PDDFTYGS-----VLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIID 546
Query: 170 DADFVFSQLKRHNTVVWTAKIVN---NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
+A + ++ V W A + N + F++ +MG +K + +TF++VL
Sbjct: 547 EAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMG---LKPDHFTFATVLD 603
Query: 227 ACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
C + G+Q+H I+K + DEY+ LVDMY KC + D+ VFE V+K++
Sbjct: 604 TCANLATI-ELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEK-VEKRDF 661
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
SWNAM+ GY +GL VEA + M+ + + + ACS +
Sbjct: 662 VSWNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHV 709
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 93/193 (48%), Gaps = 2/193 (1%)
Query: 143 LFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQV 202
+F R+ +++ Y + A +F + + V W A + C+ G F +
Sbjct: 116 VFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQES 175
Query: 203 FNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVD 262
+ F EM R + + TF+ +LK+C +++ + G Q+HA VK GLE D LVD
Sbjct: 176 VDLFVEMARRGVSPDRTTFAVLLKSCSALEEL-SLGVQVHALAVKTGLEIDVRTGSALVD 234
Query: 263 MYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQES 322
MYGKCR L DA F + ++N SW A + G ++N YV + M+ G+ + +
Sbjct: 235 MYGKCRSLDDA-LCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQP 293
Query: 323 LINDLRIACSSIS 335
+C+++S
Sbjct: 294 SYASAFRSCAAMS 306
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 114/242 (47%), Gaps = 11/242 (4%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+ CG +D A++L D + + SW ++ G+ + +E F+EM+ M L
Sbjct: 538 MYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLD-----MGLK 592
Query: 115 FPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFV 174
+ VL C +ELGKQ+HG + K + ++ +L++ Y K + D+ V
Sbjct: 593 PDHFTFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLV 652
Query: 175 FSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG--GVD 232
F ++++ + V W A I G + F+ M +E + N TF +VL+AC G+
Sbjct: 653 FEKVEKRDFVSWNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLF 712
Query: 233 DDGNCGRQMHANIVKIGLESD-EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
DDG C R H LE E+ C +VD+ G+ + ++A + + + + W
Sbjct: 713 DDG-C-RYFHLMTTHYKLEPQLEHFAC-MVDILGRSKGPQEAVKFINSMPFQADAVIWKT 769
Query: 292 ML 293
+L
Sbjct: 770 LL 771
>gi|297610920|ref|NP_001065364.2| Os10g0558600 [Oryza sativa Japonica Group]
gi|255679629|dbj|BAF27201.2| Os10g0558600 [Oryza sativa Japonica Group]
Length = 863
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 88/283 (31%), Positives = 133/283 (46%), Gaps = 7/283 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N +L + G + TA LFD MP D SW ++ GY +QE + LF EM +R
Sbjct: 87 NTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVS 146
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
F +LK+C + LG QVH L K G ++ +L++ YGK R L+
Sbjct: 147 PDRTTF-----AVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLD 201
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
DA F + N V W A I + + + F EM R + + +++S ++C
Sbjct: 202 DALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCA 261
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ N GRQ+HA+ +K SD V +VD+Y K L DA R F + + +
Sbjct: 262 AMSCL-NTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAF-FGLPNHTVETS 319
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
NAM+VG +R GL +EA M S I+ ++ + AC+
Sbjct: 320 NAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACA 362
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/264 (30%), Positives = 130/264 (49%), Gaps = 7/264 (2%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
++ L AR+ F +P + M+VG V E + LF M++ +
Sbjct: 294 VYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSS-----IR 348
Query: 115 FPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFV 174
F + V AC T G+QVH L K G +I + ++++ YGK + L +A +
Sbjct: 349 FDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLI 408
Query: 175 FSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDD 234
F +K+ ++V W A I + GH+ F EM R +K + +T+ SVLKAC +
Sbjct: 409 FQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSL 468
Query: 235 GNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLV 294
G +H ++K GL SD +V +VDMY KC ++ +A+++ + I + + SWNA+L
Sbjct: 469 -EYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRI-GGQQVVSWNAILS 526
Query: 295 GYIRNGLYVEATKFLYLMKASGIQ 318
G+ N EA KF M G++
Sbjct: 527 GFSLNKESEEAQKFFSEMLDMGLK 550
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/285 (27%), Positives = 131/285 (45%), Gaps = 7/285 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N +L ++ C L A +F M +D SW +I Y + I F EM++
Sbjct: 390 NAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMK 449
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ + VLKAC ++E G VH + K G + + ++++ Y K ++
Sbjct: 450 PDDFTYGS-----VLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIID 504
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
+A + ++ V W A + + F EM +K + +TF++VL C
Sbjct: 505 EAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCA 564
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ G+Q+H I+K + DEY+ LVDMY KC + D+ VFE V+K++ SW
Sbjct: 565 NLATI-ELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEK-VEKRDFVSW 622
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
NAM+ GY +GL VEA + M+ + + + ACS +
Sbjct: 623 NAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHV 667
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 93/193 (48%), Gaps = 2/193 (1%)
Query: 143 LFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQV 202
+F R+ +++ Y + A +F + + V W A + C+ G F +
Sbjct: 74 VFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQES 133
Query: 203 FNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVD 262
+ F EM R + + TF+ +LK+C +++ + G Q+HA VK GLE D LVD
Sbjct: 134 VDLFVEMARRGVSPDRTTFAVLLKSCSALEEL-SLGVQVHALAVKTGLEIDVRTGSALVD 192
Query: 263 MYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQES 322
MYGKCR L DA F + ++N SW A + G ++N YV + M+ G+ + +
Sbjct: 193 MYGKCRSLDDA-LCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQP 251
Query: 323 LINDLRIACSSIS 335
+C+++S
Sbjct: 252 SYASAFRSCAAMS 264
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 114/244 (46%), Gaps = 15/244 (6%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEM--MKRKKGHML 112
M+ CG +D A++L D + + SW ++ G+ + +E F+EM M K H
Sbjct: 496 MYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDH-- 553
Query: 113 LVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDAD 172
+ VL C +ELGKQ+HG + K + ++ +L++ Y K + D+
Sbjct: 554 -----FTFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSL 608
Query: 173 FVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG--G 230
VF ++++ + V W A I G + F+ M +E + N TF +VL+AC G
Sbjct: 609 LVFEKVEKRDFVSWNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVG 668
Query: 231 VDDDGNCGRQMHANIVKIGLESD-EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ DDG C R H LE E+ C +VD+ G+ + ++A + + + + W
Sbjct: 669 LFDDG-C-RYFHLMTTHYKLEPQLEHFAC-MVDILGRSKGPQEAVKFINSMPFQADAVIW 725
Query: 290 NAML 293
+L
Sbjct: 726 KTLL 729
>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
Length = 1106
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 96/301 (31%), Positives = 143/301 (47%), Gaps = 13/301 (4%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R IK N L+ M+ CG L A+ +F+ RD SW MI G+ Y+
Sbjct: 459 RSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYK 518
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
LF EM + + F + VL C +ELGKQ+HG + + G +++L +L
Sbjct: 519 LFQEMQNEELEPDNITFAS-----VLSGCKNPEALELGKQIHGRITESGLQLDVNLGNAL 573
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
IN Y + L+DA VF L+ + + WTA I +G + F +M E +
Sbjct: 574 INMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPVK 633
Query: 219 YTFSSVLKACGG---VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAER 275
TFSS+LK C +D+ G+++ A I+ G E D V L+ Y K + DA
Sbjct: 634 STFSSILKVCTSSACLDE----GKKVIAYILNSGYELDTGVGNALISAYSKSGSMTDARE 689
Query: 276 VFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
VF+ + ++I SWN ++ GY +NGL A +F Y M+ + + L ACSS S
Sbjct: 690 VFDKM-PSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLLNACSSFS 748
Query: 336 A 336
A
Sbjct: 749 A 749
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 91/334 (27%), Positives = 157/334 (47%), Gaps = 14/334 (4%)
Query: 2 DNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQ 61
D + L TT Y ++ C+ K + +HI + + + N L+ M+ CG
Sbjct: 324 DGVALNRTT--YLSILNACSTSKALEAGKLIHSHISEDGH-SSDVQIGNALISMYARCGD 380
Query: 62 LDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR--KKGHMLLVFPAWI 119
L AR+LF MP RD SW +I GY D E + L+ +M K G + +
Sbjct: 381 LPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLH---- 436
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
+L AC + GK +H + + G N L +L+N Y + L +A VF +
Sbjct: 437 ---LLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQ 493
Query: 180 RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGR 239
+ + W + I + + G + + F+EM E ++ ++ TF+SVL C + G+
Sbjct: 494 ARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKN-PEALELGK 552
Query: 240 QMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRN 299
Q+H I + GL+ D + L++MY +C L+DA VF + +++ SW AM+ G
Sbjct: 553 QIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSL-QHRDVMSWTAMIGGCADQ 611
Query: 300 GLYVEATKFLYLMKASGIQIQESLINDLRIACSS 333
G ++A + + M+ G + +S + + C+S
Sbjct: 612 GEDMKAIELFWQMQNEGFRPVKSTFSSILKVCTS 645
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 90/307 (29%), Positives = 142/307 (46%), Gaps = 10/307 (3%)
Query: 29 AFELLNHIRKRVNIKPTLLFLN---RLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIV 85
A EL I R+ L +N L+ M++ CG L AR +F + RD SW MI
Sbjct: 547 ALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIG 606
Query: 86 GYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFK 145
G D + + I LF +M + F + + VC AC ++ GK+V +
Sbjct: 607 GCADQGEDMKAIELFWQMQNEGFRPVKSTFSSILKVCTSSAC-----LDEGKKVIAYILN 661
Query: 146 LGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFND 205
G + + +LI+ Y K + DA VF ++ + V W I + G
Sbjct: 662 SGYELDTGVGNALISAYSKSGSMTDAREVFDKMPSRDIVSWNKIIAGYAQNGLGQTAVEF 721
Query: 206 FKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYG 265
+M + + N ++F S+L AC G+++HA IVK L+ D V L+ MY
Sbjct: 722 AYQMQEQDVVPNKFSFVSLLNACSSFSALEE-GKRVHAEIVKRKLQGDVRVGAALISMYA 780
Query: 266 KCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLIN 325
KC +A+ VF+ I++K N+ +WNAM+ Y ++GL +A F M+ GI+ S
Sbjct: 781 KCGSQGEAQEVFDNIIEK-NVVTWNAMINAYAQHGLASKALGFFNCMEKEGIKPDGSTFT 839
Query: 326 DLRIACS 332
+ AC+
Sbjct: 840 SILSACN 846
Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 87/335 (25%), Positives = 155/335 (46%), Gaps = 16/335 (4%)
Query: 7 PITTD--MYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDT 64
P T+ Y L++ CT ++ A + + + + P + N L+ M+V C +
Sbjct: 22 PTETERATYVALLQNCTRKRLLPEAKRIHAQMVE-AWVGPDIFLSNLLINMYVKCRSVLD 80
Query: 65 ARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWII-VCV 123
A Q+F EMP RD SW +I Y ++ LF EM P I + +
Sbjct: 81 AHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAG------FIPNKITYISI 134
Query: 124 LKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNT 183
L AC +E GK++H + K G R+ + SL++ YGK L A VF+ + +
Sbjct: 135 LTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDV 194
Query: 184 VVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA--CGGVDDDGNCGRQM 241
V + + ++ + + F +M E I + T+ ++L A + D+ G+++
Sbjct: 195 VSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDE---GKRI 251
Query: 242 HANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGL 301
H V+ GL SD V LV M +C + A++ F+ D +++ +NA++ ++G
Sbjct: 252 HKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTAD-RDVVVYNALIAALAQHGH 310
Query: 302 YVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
VEA + Y M++ G+ + + + ACS+ A
Sbjct: 311 NVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKA 345
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 77/287 (26%), Positives = 133/287 (46%), Gaps = 7/287 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N LL M+ CG L ARQ+F + RD S+ M+ Y A +EC+ LF +M
Sbjct: 167 NSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGIS 226
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ + + +L A ++ GK++H L + G + +I + +L+ + ++
Sbjct: 227 PDKVTY-----INLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVD 281
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A F + VV+ A I + GH + F + M + + N T+ S+L AC
Sbjct: 282 SAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACS 341
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
G+ +H++I + G SD + L+ MY +C L A +F + K+++ SW
Sbjct: 342 -TSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELF-YTMPKRDLISW 399
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
NA++ GY R EA + M++ G++ L AC++ SA
Sbjct: 400 NAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSA 446
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 67/262 (25%), Positives = 129/262 (49%), Gaps = 7/262 (2%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M V CG +D+A+Q F RD + +I +A + + F + + + +
Sbjct: 270 LVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAA---LAQHGHNVEAFEQYYRMRSDGV 326
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
L ++ +L AC + +E GK +H + + G S ++ + +LI+ Y + L A
Sbjct: 327 ALNRTTYL--SILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKA 384
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
+F + + + + W A I R + +K+M E +K TF +L AC
Sbjct: 385 RELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANS 444
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
+ G+ +H +I++ G++S+ ++ L++MY +C L +A+ VFE +++ SWN+
Sbjct: 445 SAYAD-GKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEG-TQARDVISWNS 502
Query: 292 MLVGYIRNGLYVEATKFLYLMK 313
M+ G+ ++G Y A K M+
Sbjct: 503 MIAGHAQHGSYETAYKLFQEMQ 524
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 112/257 (43%), Gaps = 31/257 (12%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ + G + AR++FD+MP RD SW +I GY Q + +M ++
Sbjct: 672 NALISAYSKSGSMTDAREVFDKMPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQD-- 729
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+V + V +L AC +E GK+VH + K ++ + +LI+ Y K
Sbjct: 730 ---VVPNKFSFVSLLNACSSFSALEEGKRVHAEIVKRKLQGDVRVGAALISMYAKCGSQG 786
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
+A VF + N V W A I + G + F M +E IK + TF+S+L AC
Sbjct: 787 EAQEVFDNIIEKNVVTWNAMINAYAQHGLASKALGFFNCMEKEGIKPDGSTFTSILSACN 846
Query: 230 GVDDDGNCGRQMHANIVKIG------LESD-------EYVQCGLVDMYGKCRLLRDAERV 276
HA +V G +ES+ E+ C LV + G+ R ++AE +
Sbjct: 847 ------------HAGLVLEGYQIFSSMESEYGVLPTIEHYGC-LVGLLGRARRFQEAETL 893
Query: 277 FELIVDKKNIASWNAML 293
+ + A W +L
Sbjct: 894 INQMPFPPDAAVWETLL 910
>gi|115466810|ref|NP_001057004.1| Os06g0185700 [Oryza sativa Japonica Group]
gi|55773755|dbj|BAD72438.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113595044|dbj|BAF18918.1| Os06g0185700 [Oryza sativa Japonica Group]
gi|125596287|gb|EAZ36067.1| hypothetical protein OsJ_20377 [Oryza sativa Japonica Group]
Length = 673
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 91/281 (32%), Positives = 143/281 (50%), Gaps = 10/281 (3%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
+N L+ M+ G L+ AR++FD +P R+ SW M+ G + +E + LF EM +
Sbjct: 160 MNSLVDMYAKAGDLENARKVFDRVPERNVVSWTSMLSGSIQNGIAEEGLVLFNEMRQDN- 218
Query: 109 GHMLLVFPA-WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
V P+ + +V VL AC + G+ +HG + K G S N ++ SL++ Y K
Sbjct: 219 -----VHPSEYTMVSVLAACAMLGGLHQGRWIHGSVIKYGLSTNSFISASLLDMYAKCEK 273
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
+EDA VF +L+ + V+WTA IV + F I NS T ++V+ A
Sbjct: 274 VEDARRVFDELEFVDIVLWTAMIVGYTQNKRPLDALQLFLHKKFVSIVPNSVTIATVISA 333
Query: 228 CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
+ GR +HA VK+G + V+ LVDMY KC+ L +A +F I+ K++
Sbjct: 334 SAQLRHL-PLGRSVHAIGVKLGTMESDVVRNALVDMYAKCQALPEANSIFGRIL-IKDVV 391
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQE-SLINDL 327
+WN+M+ GY NG+ E+ M+ GI S++N L
Sbjct: 392 AWNSMMAGYSENGMANESLVLFNRMRMQGISPDAISVVNAL 432
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/281 (26%), Positives = 132/281 (46%), Gaps = 7/281 (2%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL M+ C +++ AR++FDE+ D W MIVGY + + LF K +
Sbjct: 264 LLDMYAKCEKVEDARRVFDELEFVDIVLWTAMIVGYTQNKRPLDALQLFLH-----KKFV 318
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+V + I V+ A ++ LG+ VH + KLG+ + + +L++ Y K + L +A
Sbjct: 319 SIVPNSVTIATVISASAQLRHLPLGRSVHAIGVKLGTMESDVVRNALVDMYAKCQALPEA 378
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
+ +F ++ + V W + + G ++ F M + I ++ + + L AC +
Sbjct: 379 NSIFGRILIKDVVAWNSMMAGYSENGMANESLVLFNRMRMQGISPDAISVVNALSACVCL 438
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
D + G+ H +K S+ YV L+++Y KC L A+RVF + D+ ++ +W+A
Sbjct: 439 ADL-HIGKGFHTYAIKYAFMSNIYVNTALLNLYSKCADLPSAQRVFNDMTDRNSV-TWSA 496
Query: 292 MLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
M+ GY G + M I E + + ACS
Sbjct: 497 MIGGYGMQGDSAGSIDLFNEMLKENIHPNEVVFTSILSACS 537
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 72/260 (27%), Positives = 111/260 (42%), Gaps = 33/260 (12%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ C L A +F + ++D +W M+ GY + E + LF M R +G
Sbjct: 363 NALVDMYAKCQALPEANSIFGRILIKDVVAWNSMMAGYSENGMANESLVLFNRM--RMQG 420
Query: 110 HMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+ P I +V L ACVC ++ +GK H K NI + +L+N Y K L
Sbjct: 421 ----ISPDAISVVNALSACVCLADLHIGKGFHTYAIKYAFMSNIYVNTALLNLYSKCADL 476
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
A VF+ + N+V W+A I +G + F EM +E I N F+S+L AC
Sbjct: 477 PSAQRVFNDMTDRNSVTWSAMIGGYGMQGDSAGSIDLFNEMLKENIHPNEVVFTSILSAC 536
Query: 229 GGVDDDGNCGRQMHANIVKIGLE-------------SDEYVQCGLVDMYGKCRLLRDAER 275
H +V G E S ++ C +VD+ + L +A
Sbjct: 537 S------------HTGMVTAGKEYFDSMARHFNITPSMKHYAC-MVDVMARAGNLEEALE 583
Query: 276 VFELIVDKKNIASWNAMLVG 295
+ + K I+ W + L G
Sbjct: 584 FIQNMPIKAGISVWGSFLHG 603
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 59/112 (52%), Gaps = 3/112 (2%)
Query: 221 FSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELI 280
S LKAC D GR++H ++VK G +D +V LVDMY K L +A +VF+
Sbjct: 126 LSLALKACV-RSADFRYGRRLHCDVVKAG-GADGFVMNSLVDMYAKAGDLENARKVFDR- 182
Query: 281 VDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
V ++N+ SW +ML G I+NG+ E M+ + E + + AC+
Sbjct: 183 VPERNVVSWTSMLSGSIQNGIAEEGLVLFNEMRQDNVHPSEYTMVSVLAACA 234
>gi|222613253|gb|EEE51385.1| hypothetical protein OsJ_32436 [Oryza sativa Japonica Group]
Length = 863
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 88/283 (31%), Positives = 133/283 (46%), Gaps = 7/283 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N +L + G + TA LFD MP D SW ++ GY +QE + LF EM +R
Sbjct: 87 NTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVS 146
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
F +LK+C + LG QVH L K G ++ +L++ YGK R L+
Sbjct: 147 PDRTTF-----AVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLD 201
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
DA F + N V W A I + + + F EM R + + +++S ++C
Sbjct: 202 DALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCA 261
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ N GRQ+HA+ +K SD V +VD+Y K L DA R F + + +
Sbjct: 262 AM-SCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAF-FGLPNHTVETS 319
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
NAM+VG +R GL +EA M S I+ ++ + AC+
Sbjct: 320 NAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACA 362
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/264 (30%), Positives = 130/264 (49%), Gaps = 7/264 (2%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
++ L AR+ F +P + M+VG V E + LF M++ +
Sbjct: 294 VYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSS-----IR 348
Query: 115 FPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFV 174
F + V AC T G+QVH L K G +I + ++++ YGK + L +A +
Sbjct: 349 FDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLI 408
Query: 175 FSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDD 234
F +K+ ++V W A I + GH+ F EM R +K + +T+ SVLKAC +
Sbjct: 409 FQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAAL-RS 467
Query: 235 GNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLV 294
G +H ++K GL SD +V +VDMY KC ++ +A+++ + I + + SWNA+L
Sbjct: 468 LEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRI-GGQQVVSWNAILS 526
Query: 295 GYIRNGLYVEATKFLYLMKASGIQ 318
G+ N EA KF M G++
Sbjct: 527 GFSLNKESEEAQKFFSEMLDMGLK 550
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/285 (27%), Positives = 131/285 (45%), Gaps = 7/285 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N +L ++ C L A +F M +D SW +I Y + I F EM++
Sbjct: 390 NAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMK 449
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ + VLKAC ++E G VH + K G + + ++++ Y K ++
Sbjct: 450 PDDFTYGS-----VLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIID 504
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
+A + ++ V W A + + F EM +K + +TF++VL C
Sbjct: 505 EAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCA 564
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ G+Q+H I+K + DEY+ LVDMY KC + D+ VFE V+K++ SW
Sbjct: 565 NLATI-ELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEK-VEKRDFVSW 622
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
NAM+ GY +GL VEA + M+ + + + ACS +
Sbjct: 623 NAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHV 667
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 93/193 (48%), Gaps = 2/193 (1%)
Query: 143 LFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQV 202
+F R+ +++ Y + A +F + + V W A + C+ G F +
Sbjct: 74 VFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQES 133
Query: 203 FNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVD 262
+ F EM R + + TF+ +LK+C +++ + G Q+HA VK GLE D LVD
Sbjct: 134 VDLFVEMARRGVSPDRTTFAVLLKSCSALEEL-SLGVQVHALAVKTGLEIDVRTGSALVD 192
Query: 263 MYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQES 322
MYGKCR L DA F + ++N SW A + G ++N YV + M+ G+ + +
Sbjct: 193 MYGKCRSLDDA-LCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQP 251
Query: 323 LINDLRIACSSIS 335
+C+++S
Sbjct: 252 SYASAFRSCAAMS 264
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 114/244 (46%), Gaps = 15/244 (6%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEM--MKRKKGHML 112
M+ CG +D A++L D + + SW ++ G+ + +E F+EM M K H
Sbjct: 496 MYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDH-- 553
Query: 113 LVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDAD 172
+ VL C +ELGKQ+HG + K + ++ +L++ Y K + D+
Sbjct: 554 -----FTFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSL 608
Query: 173 FVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG--G 230
VF ++++ + V W A I G + F+ M +E + N TF +VL+AC G
Sbjct: 609 LVFEKVEKRDFVSWNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVG 668
Query: 231 VDDDGNCGRQMHANIVKIGLESD-EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ DDG C R H LE E+ C +VD+ G+ + ++A + + + + W
Sbjct: 669 LFDDG-C-RYFHLMTTHYKLEPQLEHFAC-MVDILGRSKGPQEAVKFINSMPFQADAVIW 725
Query: 290 NAML 293
+L
Sbjct: 726 KTLL 729
>gi|148906116|gb|ABR16216.1| unknown [Picea sitchensis]
Length = 394
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 84/270 (31%), Positives = 138/270 (51%), Gaps = 6/270 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+LL ++V CG L AR FD M D W VMI GYV + +E + L+ +M K
Sbjct: 50 TKLLNLYVKCGSLPDARLAFDNMTKGDVFPWNVMIGGYVKHGETREALELYHQMQKVSST 109
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ + VL AC ++ GK ++ + G ++ + +LIN + K +E
Sbjct: 110 NP----DNYTYSSVLNACARLASLSEGKLIYDEIISKGCEMDVIVENALINMFMKCGSIE 165
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
DA VF ++ N V WTA + + G + F EM E +K N T +SVL AC
Sbjct: 166 DARRVFDKMCERNLVSWTAMVSGYAQGGFADEALRMFYEMQGEDVKANYVTVASVLPACA 225
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ D G+++H I++ GL+ V L+DMY KC + A++VF+ ++ ++++ SW
Sbjct: 226 QLSDLQQ-GKEIHGYIIRRGLDLGIVVGNALIDMYAKCGSIGSAQKVFDKML-QRDVVSW 283
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQI 319
N + GY +NG + E + M+ +G++I
Sbjct: 284 NVAIAGYAQNGRFDECMELFRKMQCAGLKI 313
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 100/214 (46%), Gaps = 3/214 (1%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
+L C + KQVH + G R S+ L+N Y K L DA F + + +
Sbjct: 17 LLHLCTKAKTLAEAKQVHAHMLLTGILRIPSVETKLLNLYVKCGSLPDARLAFDNMTKGD 76
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGR-ERIKKNSYTFSSVLKACGGVDDDGNCGRQM 241
W I + G + + +M + ++YT+SSVL AC + G+ +
Sbjct: 77 VFPWNVMIGGYVKHGETREALELYHQMQKVSSTNPDNYTYSSVLNACARLASLSE-GKLI 135
Query: 242 HANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGL 301
+ I+ G E D V+ L++M+ KC + DA RVF+ + ++ N+ SW AM+ GY + G
Sbjct: 136 YDEIISKGCEMDVIVENALINMFMKCGSIEDARRVFDKMCER-NLVSWTAMVSGYAQGGF 194
Query: 302 YVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
EA + Y M+ ++ + + AC+ +S
Sbjct: 195 ADEALRMFYEMQGEDVKANYVTVASVLPACAQLS 228
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 105/250 (42%), Gaps = 43/250 (17%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M + CG ++ AR++FD+M R+ SW M+ GY E + +F EM
Sbjct: 152 NALINMFMKCGSIEDARRVFDKMCERNLVSWTAMVSGYAQGGFADEALRMFYEMQGED-- 209
Query: 110 HMLLVFPAWIIVC-VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
V ++ V VL AC +++ GK++HG + + G I + +LI+ Y K +
Sbjct: 210 ----VKANYVTVASVLPACAQLSDLQQGKEIHGYIIRRGLDLGIVVGNALIDMYAKCGSI 265
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHF----------------------------- 199
A VF ++ + + V W I + G F
Sbjct: 266 GSAQKVFDKMLQRDVVSWNVAIAGYAQNGRFDECMELFRKMQCAGLKIDVITWNTLITAY 325
Query: 200 ------HQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESD 253
Q F++M +K NS T +SVL AC V G+++H + + +SD
Sbjct: 326 AQNGYGDQTLELFQQMQLRGVKPNSITIASVLSACAAVSALQE-GKRIHDLVNRSECKSD 384
Query: 254 EYVQCGLVDM 263
V L+DM
Sbjct: 385 ICVGNALIDM 394
>gi|302818918|ref|XP_002991131.1| hypothetical protein SELMODRAFT_132950 [Selaginella moellendorffii]
gi|300141062|gb|EFJ07777.1| hypothetical protein SELMODRAFT_132950 [Selaginella moellendorffii]
Length = 582
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 91/300 (30%), Positives = 143/300 (47%), Gaps = 17/300 (5%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
++ I L ++ M++SCG LD AR LFD +P +D W +I Y +QE I
Sbjct: 30 QMGIAEQLPLAKFIVQMYLSCGSLDEARNLFDLLPSKDVGMWTAVIAAYAKYGRWQEAIK 89
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
LF E M+ + G + A V+K+ ++ + VH + +LG+ + + +L
Sbjct: 90 LF-ETMESRTGPAKATYFA-----VMKSFASAESLAGARLVHSRIVELGAENDDLVRAAL 143
Query: 159 INFYGKFRCLEDADFVFSQL-----KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRER 213
I YG+ LE+A +FS H+ +VW A I + + G F +M R+
Sbjct: 144 IEMYGRCGSLEEAWSIFSSSVAGDGGPHSVLVWNAIISASFQNGQLKGSLELFWKMRRQG 203
Query: 214 IKKNSYTFSSVLKACGGVDDDGNC--GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLR 271
++ +S T ++ L C GN GR +H I GLE D +V LVDMYGKC +
Sbjct: 204 VRPDSLTLATALDTCAA---SGNLHEGRVVHGWITMKGLEQDVFVGNALVDMYGKCGSVE 260
Query: 272 DAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
+A VF+ + +KN SWN M+ Y +G EA + M G++ + +AC
Sbjct: 261 EAWAVFDNM-KEKNWFSWNFMVEAYCSSGYSTEAIQVFLQMLQEGVKPNAKTFTSVLVAC 319
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/263 (25%), Positives = 118/263 (44%), Gaps = 39/263 (14%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQE-----CITLFAEMMKR 106
L+ M+ CG L+ A +F D +V++ + A +Q + LF +M R
Sbjct: 143 LIEMYGRCGSLEEAWSIFSSSVAGDGGPHSVLVWNAIISASFQNGQLKGSLELFWKM--R 200
Query: 107 KKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
++G V P + + L C + N+ G+ VHG + G +++ + +L++ YGK
Sbjct: 201 RQG----VRPDSLTLATALDTCAASGNLHEGRVVHGWITMKGLEQDVFVGNALVDMYGKC 256
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
+E+A VF +K N W + C G+ + F +M +E +K N+ TF+SVL
Sbjct: 257 GSVEEAWAVFDNMKEKNWFSWNFMVEAYCSSGYSTEAIQVFLQMLQEGVKPNAKTFTSVL 316
Query: 226 KACGGVDDDGNCGRQMHANIVKIG------LESD-------EYVQCGLVDMYGKCRLLRD 272
ACG HA ++ G + SD E+ C V + G+ +++
Sbjct: 317 VACG------------HAGFIREGILHLVYMSSDYDVVPIAEHYACA-VGLLGRSGWVKE 363
Query: 273 AERVFELIVDKKNIASWNAMLVG 295
AE + + D + W+A++
Sbjct: 364 AEEYVKKLPDAE-APVWDALVTA 385
>gi|302785790|ref|XP_002974666.1| hypothetical protein SELMODRAFT_101 [Selaginella moellendorffii]
gi|300157561|gb|EFJ24186.1| hypothetical protein SELMODRAFT_101 [Selaginella moellendorffii]
Length = 921
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 101/328 (30%), Positives = 157/328 (47%), Gaps = 21/328 (6%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
+ C++ C KD ++ IR+ V T+L N LL ++ CG L+ +R++F+ M
Sbjct: 2 FACVLSACAGLKDMERGKKVHRRIRESVARVDTVL-QNALLNLYAKCGDLEESRRIFEAM 60
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI-IVCVLKACVCTM 131
R +W MI YV +QE + F M P+ I VL AC
Sbjct: 61 ERRTVATWNTMITAYVQHDFFQEALEAFRRMDAP---------PSSITFTSVLGACCSPD 111
Query: 132 NMELGKQVHGLLFKLGSSRNIS----LTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWT 187
++E GK +H + SS I L SL+ YGK LEDA+ VF ++R N WT
Sbjct: 112 DLETGKAIHRQIG--ASSPQIQADEILQNSLVTMYGKCGSLEDAERVFHGIRRKNAFSWT 169
Query: 188 AKIVNNCREGHFHQVFNDFKEMGRE-RIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIV 246
A I + G+ + F +M E R++ + T++ VL AC + D G ++HA I
Sbjct: 170 AMITAYAQNGYERRAIEVFGDMMSEGRVEPDPITYAGVLTACSTLGDL-ETGMRIHALIR 228
Query: 247 KIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEAT 306
G+ES V GL+D+YGK DA +VFE + D +++ W A + + +G A
Sbjct: 229 SKGVES-AMVSTGLIDLYGKWGFFEDALQVFESVRD-RDVVIWTAFIAACVYHGQSGFAL 286
Query: 307 KFLYLMKASGIQIQESLINDLRIACSSI 334
+ M+A G+Q + + ACS++
Sbjct: 287 ELFRKMEAEGLQANNVTFSKILAACSNL 314
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 87/334 (26%), Positives = 157/334 (47%), Gaps = 21/334 (6%)
Query: 7 PITTDMYTCLIKECTFQKDSAGAFELLNHIRKRV-----NIKPTLLFLNRLLLMHVSCGQ 61
P ++ +T ++ C D E I +++ I+ + N L+ M+ CG
Sbjct: 94 PPSSITFTSVLGACCSPDD----LETGKAIHRQIGASSPQIQADEILQNSLVTMYGKCGS 149
Query: 62 LDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIV 121
L+ A ++F + ++ SW MI Y + I +F +MM + V P I
Sbjct: 150 LEDAERVFHGIRRKNAFSWTAMITAYAQNGYERRAIEVFGDMMSEGR-----VEPDPITY 204
Query: 122 C-VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
VL AC ++E G ++H L+ G + TG LI+ YGK+ EDA VF ++
Sbjct: 205 AGVLTACSTLGDLETGMRIHALIRSKGVESAMVSTG-LIDLYGKWGFFEDALQVFESVRD 263
Query: 181 HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQ 240
+ V+WTA I G F++M E ++ N+ TFS +L AC + +D G+
Sbjct: 264 RDVVIWTAFIAACVYHGQSGFALELFRKMEAEGLQANNVTFSKILAACSNL-EDFETGKT 322
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
+ I +GLE D+ +Q G++ ++ +C L +F+ + + + +W M+ Y + G
Sbjct: 323 IEDRIYTLGLEYDDVLQDGILSLHARCGSLVGTREMFDRM-PHRTVVTWTTMIAAYNQRG 381
Query: 301 LYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
+EA + + M I+ + ++++ ACS +
Sbjct: 382 YSMEALELYHCMD---IEPDDIALSNVLQACSRL 412
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 80/284 (28%), Positives = 127/284 (44%), Gaps = 12/284 (4%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
+L +H CG L R++FD MP R +W MI Y E + L+ H
Sbjct: 342 ILSLHARCGSLVGTREMFDRMPHRTVVTWTTMIAAYNQRGYSMEALELY---------HC 392
Query: 112 LLVFPAWIIVC-VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
+ + P I + VL+AC N+E G+ VH + ++ + L++ Y K L +
Sbjct: 393 MDIEPDDIALSNVLQACSRLKNLEQGRAVHSRIASRDFEPSLMVQTLLVDMYVKCGDLAE 452
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
A F K + + WT+ I E + F M E ++ NS TF +V+ AC
Sbjct: 453 ARRTFDGFKARDVISWTSLITAYSHENFGREALEVFHSMELEGVEPNSITFCTVIDACSR 512
Query: 231 VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWN 290
+ GR +H+ +V G SDE+V LV MY K + A VF+ I K+ SW
Sbjct: 513 LSSLLP-GRALHSRVVATGHISDEFVGNALVSMYSKFGRVDFARVVFDSIPVKR-YPSWR 570
Query: 291 AMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
MLV +NG EA + + G + + + ++C+++
Sbjct: 571 VMLVALTQNGHSHEALEMYSRIHLEGFRPGSPIFSAALVSCTAL 614
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 84/317 (26%), Positives = 142/317 (44%), Gaps = 15/317 (4%)
Query: 5 CLPITTD--MYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQL 62
C+ I D + +++ C+ K+ + + I R + +P+L+ L+ M+V CG L
Sbjct: 392 CMDIEPDDIALSNVLQACSRLKNLEQGRAVHSRIASR-DFEPSLMVQTLLVDMYVKCGDL 450
Query: 63 DTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVC 122
AR+ FD RD SW +I Y +E + +F M + V P I C
Sbjct: 451 AEARRTFDGFKARDVISWTSLITAYSHENFGREALEVFHSM------ELEGVEPNSITFC 504
Query: 123 -VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH 181
V+ AC ++ G+ +H + G + + +L++ Y KF ++ A VF +
Sbjct: 505 TVIDACSRLSSLLPGRALHSRVVATGHISDEFVGNALVSMYSKFGRVDFARVVFDSIPVK 564
Query: 182 NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQM 241
W +V + GH H+ + + E + S FS+ L +C ++D R +
Sbjct: 565 RYPSWRVMLVALTQNGHSHEALEMYSRIHLEGFRPGSPIFSAALVSCTALEDVSR-ARAI 623
Query: 242 HANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGL 301
H I D + L+++Y KC L +A VF+ + +K + SW M+ GY +NG
Sbjct: 624 HGVIKSSDFYPDLVLSNVLMNVYAKCGELEEARLVFDQMTEKNEV-SWTTMIGGYAQNGR 682
Query: 302 YVEATKFLYLMKASGIQ 318
EA L L KA +Q
Sbjct: 683 PAEA---LELYKAMDVQ 696
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 74/286 (25%), Positives = 131/286 (45%), Gaps = 16/286 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ G++D AR +FD +P++ + SW VM+V E + +++ +
Sbjct: 539 NALVSMYSKFGRVDFARVVFDSIPVKRYPSWRVMLVALTQNGHSHEALEMYSRI------ 592
Query: 110 HMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
H+ P + I L +C ++ + +HG++ ++ L+ L+N Y K L
Sbjct: 593 HLEGFRPGSPIFSAALVSCTALEDVSRARAIHGVIKSSDFYPDLVLSNVLMNVYAKCGEL 652
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
E+A VF Q+ N V WT I + G + +K M ++ N F V+ +C
Sbjct: 653 EEARLVFDQMTEKNEVSWTTMIGGYAQNGRPAEALELYKAMD---VQPNFIAFVPVISSC 709
Query: 229 GGVDDDGNC--GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
D G G+++HA + GL+++E + LV+MY KC L A F+ +
Sbjct: 710 A---DLGALVEGQRVHARLSDAGLQNNEVIVTALVNMYAKCGKLGLAREFFDSTY-CPDA 765
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+WN+M Y + G + + M G+Q + + +ACS
Sbjct: 766 GAWNSMATAYAQFGHGSQVLELYREMCLQGVQPNGITLLSVLVACS 811
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 69/272 (25%), Positives = 122/272 (44%), Gaps = 13/272 (4%)
Query: 10 TDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLF 69
+ +++ + CT +D + A ++ + K + P L+ N L+ ++ CG+L+ AR +F
Sbjct: 601 SPIFSAALVSCTALEDVSRA-RAIHGVIKSSDFYPDLVLSNVLMNVYAKCGELEEARLVF 659
Query: 70 DEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI-IVCVLKACV 128
D+M ++ SW MI GY E + L+ M V P +I V V+ +C
Sbjct: 660 DQMTEKNEVSWTTMIGGYAQNGRPAEALELYKAMD---------VQPNFIAFVPVISSCA 710
Query: 129 CTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTA 188
+ G++VH L G N + +L+N Y K L A F + W +
Sbjct: 711 DLGALVEGQRVHARLSDAGLQNNEVIVTALVNMYAKCGKLGLAREFFDSTYCPDAGAWNS 770
Query: 189 KIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKI 248
+ GH QV ++EM + ++ N T SVL AC + C + +
Sbjct: 771 MATAYAQFGHGSQVLELYREMCLQGVQPNGITLLSVLVACSHMGMLEECEHRFECMVADH 830
Query: 249 GL-ESDEYVQCGLVDMYGKCRLLRDAERVFEL 279
G+ + E+ C + D+ G+ L +AE+V ++
Sbjct: 831 GIAPTSEHYSC-MTDLLGRSGRLEEAEKVVKM 861
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 56/100 (56%), Gaps = 2/100 (2%)
Query: 220 TFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFEL 279
TF+ VL AC G+ D G+++H I + D +Q L+++Y KC L ++ R+FE
Sbjct: 1 TFACVLSACAGLKDMER-GKKVHRRIRESVARVDTVLQNALLNLYAKCGDLEESRRIFEA 59
Query: 280 IVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQI 319
+ +++ +A+WN M+ Y+++ + EA + M A I
Sbjct: 60 M-ERRTVATWNTMITAYVQHDFFQEALEAFRRMDAPPSSI 98
>gi|414885949|tpg|DAA61963.1| TPA: hypothetical protein ZEAMMB73_954210 [Zea mays]
Length = 633
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 95/333 (28%), Positives = 153/333 (45%), Gaps = 20/333 (6%)
Query: 6 LPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTA 65
L T +Y +I C K+ AGA + H+ R + LN L+ M+ CG + A
Sbjct: 56 LAPTPRLYHSIIAACAQFKNLAGARAIHAHL-SRSCLAGDAFLLNSLIHMYCKCGAVSDA 114
Query: 66 RQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK---RKKGHMLLVFPAWIIVC 122
R +FD+MP RD SW +I GY E I L +M++ R G +
Sbjct: 115 RHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNG--------FTFTS 166
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
+LKA +G+Q+H L K ++ + +L++ Y + ++ A VF +L N
Sbjct: 167 LLKATGACGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKN 226
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA---CGGVDDDGNCGR 239
V W A I R+ F EM R +T+SS+ A G ++ GR
Sbjct: 227 EVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQ----GR 282
Query: 240 QMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRN 299
+HA+++K G + +V ++ MY K + DA +VF+ + DK+++ +WN ML +
Sbjct: 283 WVHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRM-DKRDLVTWNTMLTALAQY 341
Query: 300 GLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
GL EA ++ GIQ+ + + ACS
Sbjct: 342 GLGKEAVAHFEEIRKCGIQLNQITFLSVLTACS 374
>gi|297833652|ref|XP_002884708.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330548|gb|EFH60967.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 1028
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 94/292 (32%), Positives = 138/292 (47%), Gaps = 7/292 (2%)
Query: 43 KPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAE 102
+P L ++ ++S G+L AR LF EMP D +W VMI G+ I F
Sbjct: 258 RPDHLAFVTVINTYISLGKLKDARLLFGEMPSPDVVAWNVMISGHGKRGCEIVAIEYFLN 317
Query: 103 MMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFY 162
M K + VL A N++LG VH KLG + NI + SL++ Y
Sbjct: 318 MRKSSVKSTRSTLGS-----VLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMY 372
Query: 163 GKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFS 222
K +E A VF L+ N V+W A I G H+V F +M + +TF+
Sbjct: 373 SKCEKMEAAAKVFEALEERNDVLWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFT 432
Query: 223 SVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282
S+L C V D G Q H+ I+K L + +V LVDMY KC L DA ++FE + D
Sbjct: 433 SLLSTC-AVSHDLEMGSQFHSIIIKKKLTKNLFVGNALVDMYAKCGALEDARQIFEHMCD 491
Query: 283 KKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
+ N+ SWN ++ GY+++ EA M + GI + + AC+++
Sbjct: 492 RDNV-SWNTIIGGYVQDENESEAFDLFMRMNSCGIVSDGACLASTLKACTNV 542
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 98/326 (30%), Positives = 154/326 (47%), Gaps = 11/326 (3%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
+T L+ C D + + I K+ + L N L+ M+ CG L+ ARQ+F+ M
Sbjct: 431 FTSLLSTCAVSHDLEMGSQFHSIIIKK-KLTKNLFVGNALVDMYAKCGALEDARQIFEHM 489
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN 132
RD SW +I GYV + E LF M +V + LKAC
Sbjct: 490 CDRDNVSWNTIIGGYVQDENESEAFDLFMRM-----NSCGIVSDGACLASTLKACTNVHG 544
Query: 133 MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192
+ GKQVH L K G R + SLI+ Y K +EDA VFS + + V A ++
Sbjct: 545 LYQGKQVHCLSVKCGLDRVLHTGSSLIDMYSKCGIIEDARKVFSSMPEWSVVSMNA-LIA 603
Query: 193 NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLES 252
+ + + F+EM + + + TF+++++AC + G Q H I+K G S
Sbjct: 604 GYSQNNLEEAVVLFQEMLTKGVNPSEITFATIVEACHK-PESLTLGTQFHGQIIKWGFSS 662
Query: 253 D-EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYL 311
+ EY+ L+ +Y R + +A +F + K+I W M+ G+ +NG Y EA KF
Sbjct: 663 EGEYLGISLLGLYMNSRRMAEACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALKFYKE 722
Query: 312 MKASG-IQIQESLINDLRIACSSISA 336
M+ G + Q + + LR+ CS +S+
Sbjct: 723 MRHDGALPDQATFVTVLRV-CSVLSS 747
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 85/286 (29%), Positives = 142/286 (49%), Gaps = 11/286 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+ L+ M+ CG ++ AR++F MP S +I GY + +E + LF EM+ +
Sbjct: 568 SSLIDMYSKCGIIEDARKVFSSMPEWSVVSMNALIAGYSQ-NNLEEAVVLFQEMLTKG-- 624
Query: 110 HMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLG-SSRNISLTGSLINFYGKFRC 167
V P+ I +++AC ++ LG Q HG + K G SS L SL+ Y R
Sbjct: 625 ----VNPSEITFATIVEACHKPESLTLGTQFHGQIIKWGFSSEGEYLGISLLGLYMNSRR 680
Query: 168 LEDADFVFSQLKRHNTVV-WTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
+ +A +FS+L ++V WT + + + G + + +KEM + + TF +VL+
Sbjct: 681 MAEACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGALPDQATFVTVLR 740
Query: 227 ACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
C V GR +H+ I + + DE L+DMY KC ++ + +VF+ + + N+
Sbjct: 741 VCS-VLSSLREGRAIHSLIFHLAHDLDELTSNTLIDMYAKCGDMKSSSQVFDEMRRRSNV 799
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
SWN+++ GY +NG +A K M+ S I E + ACS
Sbjct: 800 VSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLTACS 845
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 91/187 (48%), Gaps = 3/187 (1%)
Query: 130 TMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAK 189
+ + +GK VH LG L ++++ Y K + A+ F+ L++ + W +
Sbjct: 73 ALALRIGKAVHSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAEKQFNSLEK-DVTAWNSM 131
Query: 190 IVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIG 249
+ G +V F + I N +TFS VL + + + GRQ+H +++K+G
Sbjct: 132 LSMYSSIGQPGKVLRSFVSLFENLIFPNKFTFSIVL-STSARETNVEFGRQIHCSMIKMG 190
Query: 250 LESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFL 309
LE + Y LVDMY KC L DA+RVF+ IVD N W + GY++ GL EA
Sbjct: 191 LERNSYCGGALVDMYAKCDRLGDAQRVFDGIVD-PNTVCWTCLFSGYVKAGLPEEAVIVF 249
Query: 310 YLMKASG 316
M+ G
Sbjct: 250 ERMRGEG 256
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/249 (25%), Positives = 118/249 (47%), Gaps = 17/249 (6%)
Query: 52 LLLMHVSCGQLDTARQLFDEMP-LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGH 110
LL ++++ ++ A LF E+ + W M+ G+ Y+E + + EM R G
Sbjct: 671 LLGLYMNSRRMAEACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALKFYKEM--RHDGA 728
Query: 111 MLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
+ V VL+ C ++ G+ +H L+F L + + +LI+ Y K ++
Sbjct: 729 LP---DQATFVTVLRVCSVLSSLREGRAIHSLIFHLAHDLDELTSNTLIDMYAKCGDMKS 785
Query: 171 ADFVFSQLKRHNTVV-WTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC- 228
+ VF +++R + VV W + I + G+ F M + I + TF VL AC
Sbjct: 786 SSQVFDEMRRRSNVVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLTACS 845
Query: 229 --GGVDDDGNCGRQMHANIV-KIGLESD-EYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
G V D GR++ ++ + G+E+ ++V C +VD+ G+ L++A+ E K
Sbjct: 846 HAGKVSD----GRKIFEMMIGQYGIEARVDHVAC-MVDLLGRWGYLQEADDFIEAQNLKP 900
Query: 285 NIASWNAML 293
+ W+++L
Sbjct: 901 DARLWSSLL 909
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 59/279 (21%), Positives = 112/279 (40%), Gaps = 45/279 (16%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N ++ ++ C Q+ A + F+ + +D +W M+ Y + + + F + +
Sbjct: 99 NAIVDLYAKCAQVSYAEKQFNSLE-KDVTAWNSMLSMYSSIGQPGKVLRSFVSLFEN--- 154
Query: 110 HMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
L+FP + VL N+E G+Q+H + K+G RN G+L++ Y K L
Sbjct: 155 ---LIFPNKFTFSIVLSTSARETNVEFGRQIHCSMIKMGLERNSYCGGALVDMYAKCDRL 211
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
DA VF + NTV WT + G + F+ M E + + F +V+
Sbjct: 212 GDAQRVFDGIVDPNTVCWTCLFSGYVKAGLPEEAVIVFERMRGEGHRPDHLAFVTVI--- 268
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
+ Y+ G L+DA +F + ++ +
Sbjct: 269 ------------------------NTYISLG---------KLKDARLLFGEM-PSPDVVA 294
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDL 327
WN M+ G+ + G + A ++ M+ S ++ S + +
Sbjct: 295 WNVMISGHGKRGCEIVAIEYFLNMRKSSVKSTRSTLGSV 333
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 77/150 (51%), Gaps = 11/150 (7%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLR-DFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
N L+ M+ CG + ++ Q+FDEM R + SW +I GY ++ + +F M ++
Sbjct: 771 NTLIDMYAKCGDMKSSSQVFDEMRRRSNVVSWNSLINGYAKNGYAEDALKIFDSM---RQ 827
Query: 109 GHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLF-KLGSSRNISLTGSLINFYGKFR 166
H++ P I + VL AC + G+++ ++ + G + +++ G++
Sbjct: 828 SHIM---PDEITFLGVLTACSHAGKVSDGRKIFEMMIGQYGIEARVDHVACMVDLLGRWG 884
Query: 167 CLEDA-DFVFSQLKRHNTVVWTAKIVNNCR 195
L++A DF+ +Q + + +W++ ++ CR
Sbjct: 885 YLQEADDFIEAQNLKPDARLWSS-LLGACR 913
>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
Length = 820
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 83/258 (32%), Positives = 141/258 (54%), Gaps = 9/258 (3%)
Query: 51 RLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGH 110
L+ +++ G +D A Q+F+EMP D W+ MI Y +E I +F M ++G
Sbjct: 286 ELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRM---RRG- 341
Query: 111 MLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
LV P + + +L+AC ++++LG Q+H + K+G N+ ++ +L++ Y K +E
Sbjct: 342 --LVLPNQFTLASLLQACASLVDLQLGNQIHCHVVKVGLDMNVFVSNALMDMYAKCGRME 399
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
++ +FS+ V W IV + G+ + FK+M +++ T+SSVL+AC
Sbjct: 400 NSLQLFSESPNCTDVSWNTVIVGYVQAGNGEKALILFKDMLECQVQGTEVTYSSVLRACA 459
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
G+ G Q+H+ VK + + V L+DMY KC ++DA VF+++ + + SW
Sbjct: 460 GI-AALEPGSQIHSLSVKTIYDKNTVVGNALIDMYAKCGNIKDARLVFDMLREHDQV-SW 517
Query: 290 NAMLVGYIRNGLYVEATK 307
NAM+ GY +GLY EA K
Sbjct: 518 NAMISGYSVHGLYGEALK 535
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 83/278 (29%), Positives = 139/278 (50%), Gaps = 7/278 (2%)
Query: 59 CGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAW 118
CG + ARQ+FD + +D SW M+ YV+ ++E + LF+ M R G F
Sbjct: 193 CGYAECARQVFDAIEYKDMVSWTGMVACYVENECFEESLKLFSRM--RIVGFKPNNF--- 247
Query: 119 IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL 178
VLKACV +GK VHG FK + + LI+ Y K ++DA VF ++
Sbjct: 248 TFASVLKACVGLEVFNVGKAVHGCAFKTSYLEELFVGVELIDLYIKSGDVDDALQVFEEM 307
Query: 179 KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCG 238
+ + + W+ I + + F M R + N +T +S+L+AC + D G
Sbjct: 308 PKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQACASL-VDLQLG 366
Query: 239 RQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIR 298
Q+H ++VK+GL+ + +V L+DMY KC + ++ ++F + ++ SWN ++VGY++
Sbjct: 367 NQIHCHVVKVGLDMNVFVSNALMDMYAKCGRMENSLQLFSESPNCTDV-SWNTVIVGYVQ 425
Query: 299 NGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
G +A M +Q E + + AC+ I+A
Sbjct: 426 AGNGEKALILFKDMLECQVQGTEVTYSSVLRACAGIAA 463
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 97/326 (29%), Positives = 152/326 (46%), Gaps = 10/326 (3%)
Query: 10 TDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLL-MHVSCGQLDTARQL 68
T +Y L++ C D A L I K+ N LF N +LL +V L A +L
Sbjct: 44 TYIYGSLLQSCIRNGDCATGKYLHCEIIKKGNCLD--LFANNILLNFYVKYDSLPDAAKL 101
Query: 69 FDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACV 128
FDEMP R+ S+ +I GY + E I LF+ + + +GH L F + VLK V
Sbjct: 102 FDEMPDRNTVSFVTLIQGYSQCLRFSEAIGLFSRL--QGEGHELNPF---VFSTVLKLLV 156
Query: 129 CTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTA 188
+LG VH ++KLG + + +LI+ Y E A VF ++ + V WT
Sbjct: 157 SAEWAKLGFSVHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQVFDAIEYKDMVSWTG 216
Query: 189 KIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKI 248
+ F + F M K N++TF+SVLKAC G+ + N G+ +H K
Sbjct: 217 MVACYVENECFEESLKLFSRMRIVGFKPNNFTFASVLKACVGL-EVFNVGKAVHGCAFKT 275
Query: 249 GLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKF 308
+ +V L+D+Y K + DA +VFE + K ++ W+ M+ Y ++ EA +
Sbjct: 276 SYLEELFVGVELIDLYIKSGDVDDALQVFEEM-PKDDVIPWSFMIARYAQSEQSEEAIEM 334
Query: 309 LYLMKASGIQIQESLINDLRIACSSI 334
M+ + + + L AC+S+
Sbjct: 335 FCRMRRGLVLPNQFTLASLLQACASL 360
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 121/258 (46%), Gaps = 11/258 (4%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
+V + + N L+ M+ CG+++ + QLF E P SW +IVGYV + ++ +
Sbjct: 375 KVGLDMNVFVSNALMDMYAKCGRMENSLQLFSESPNCTDVSWNTVIVGYVQAGNGEKALI 434
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
LF +M++ + + + + VL+AC +E G Q+H L K +N + +L
Sbjct: 435 LFKDMLECQVQGTEVTYSS-----VLRACAGIAALEPGSQIHSLSVKTIYDKNTVVGNAL 489
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
I+ Y K ++DA VF L+ H+ V W A I G + + F+ M K +
Sbjct: 490 IDMYAKCGNIKDARLVFDMLREHDQVSWNAMISGYSVHGLYGEALKTFESMLETECKPDK 549
Query: 219 YTFSSVLKAC--GGVDDDGNCGRQMHANIVKIGLES-DEYVQCGLVDMYGKCRLLRDAER 275
TF +L AC G+ D G + + + +E E+ C +V + G+ L A +
Sbjct: 550 VTFVGILSACSNAGLLDRGQA--YFKSMVEEYDIEPCAEHYTC-MVWLLGRSGHLDKAAK 606
Query: 276 VFELIVDKKNIASWNAML 293
+ I + ++ W A+L
Sbjct: 607 LVHEIPFEPSVMVWRALL 624
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 107/236 (45%), Gaps = 2/236 (0%)
Query: 96 CITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLT 155
CI + ++ H F +I +L++C+ + GK +H + K G+ ++
Sbjct: 23 CIITQRSFLAQRTSHSSPEFNTYIYGSLLQSCIRNGDCATGKYLHCEIIKKGNCLDLFAN 82
Query: 156 GSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIK 215
L+NFY K+ L DA +F ++ NTV + I + F + F + E +
Sbjct: 83 NILLNFYVKYDSLPDAAKLFDEMPDRNTVSFVTLIQGYSQCLRFSEAIGLFSRLQGEGHE 142
Query: 216 KNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAER 275
N + FS+VLK + G +HA + K+G +SD +V L+D Y C A +
Sbjct: 143 LNPFVFSTVLKLLVSA-EWAKLGFSVHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQ 201
Query: 276 VFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
VF+ I + K++ SW M+ Y+ N + E+ K M+ G + + AC
Sbjct: 202 VFDAI-EYKDMVSWTGMVACYVENECFEESLKLFSRMRIVGFKPNNFTFASVLKAC 256
>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 902
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 80/283 (28%), Positives = 151/283 (53%), Gaps = 9/283 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ CG RQ+F+++ RD +W MI G + ++E ++ +M +
Sbjct: 268 LVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREG---- 323
Query: 112 LLVFPAWII-VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
V P I V +L ACV + + GK++H + K G + +I + +LI+ Y + ++D
Sbjct: 324 --VMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCGSIKD 381
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
A VF ++ R + + WTA I + G + ++EM + ++ N T++S+L AC
Sbjct: 382 ARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNACSS 441
Query: 231 VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWN 290
GR++H +V+ GL +D +V LV+MY C ++DA +VF+ ++ +++I ++N
Sbjct: 442 -PAALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVKDARQVFDRMI-QRDIVAYN 499
Query: 291 AMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSS 333
AM+ GY + L EA K ++ G++ + ++ AC++
Sbjct: 500 AMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACAN 542
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 89/317 (28%), Positives = 151/317 (47%), Gaps = 16/317 (5%)
Query: 26 SAGAFELLNHIRKRVNIKPTLLF----LNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWA 81
S GA E I + ++ LLF N +L M+ CG ++ AR++FD+M + SW
Sbjct: 138 SPGALEWGREIHFQA-MQAGLLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSVVSWT 196
Query: 82 VMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWII-VCVLKACVCTMNMELGKQVH 140
+ I GY D + +F +M + V P I + VL A ++ GK VH
Sbjct: 197 ITIGGYADCGRSETAFEIFQKMEQEG------VVPNRITYISVLNAFSSPAALKWGKAVH 250
Query: 141 GLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFH 200
+ G + ++ +L+ Y K +D VF +L + + W I G++
Sbjct: 251 SRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWE 310
Query: 201 QVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDG-NCGRQMHANIVKIGLESDEYVQCG 259
+ + +M RE + N T+ +L AC V+ + G+++H+ + K G SD VQ
Sbjct: 311 EASEVYNQMQREGVMPNKITYVILLNAC--VNSAALHWGKEIHSRVAKAGFTSDIGVQNA 368
Query: 260 LVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQI 319
L+ MY +C ++DA VF+ +V +K++ SW AM+ G ++G EA M+ +G++
Sbjct: 369 LISMYSRCGSIKDARLVFDKMV-RKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEP 427
Query: 320 QESLINDLRIACSSISA 336
+ ACSS +A
Sbjct: 428 NRVTYTSILNACSSPAA 444
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 85/312 (27%), Positives = 150/312 (48%), Gaps = 10/312 (3%)
Query: 8 ITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQ 67
+ + Y ++K C KD ++ HI + + P +N L+ M++ CG ++ ARQ
Sbjct: 21 VNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTV-PDQYTVNALINMYIQCGSIEEARQ 79
Query: 68 LFDEMPL--RDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLK 125
++ ++ R +SW M+VGY+ ++ + L +M + L I+ L
Sbjct: 80 VWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHG-----LAPDRTTIMSFLS 134
Query: 126 ACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVV 185
+C +E G+++H + G ++ + ++N Y K +E+A VF ++++ + V
Sbjct: 135 SCKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSVVS 194
Query: 186 WTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANI 245
WT I G F F++M +E + N T+ SVL A G+ +H+ I
Sbjct: 195 WTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSS-PAALKWGKAVHSRI 253
Query: 246 VKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEA 305
+ G ESD V LV MY KC +D +VFE +V++ IA WN M+ G G + EA
Sbjct: 254 LNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIA-WNTMIGGLAEGGYWEEA 312
Query: 306 TKFLYLMKASGI 317
++ M+ G+
Sbjct: 313 SEVYNQMQREGV 324
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 80/286 (27%), Positives = 133/286 (46%), Gaps = 13/286 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ CG + AR +FD+M +D SW MI G E +T++ EM +
Sbjct: 367 NALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAG-- 424
Query: 110 HMLLVFPAWII-VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
V P + +L AC +E G+++H + + G + + + +L+N Y +
Sbjct: 425 ----VEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMCGSV 480
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+DA VF ++ + + V + A I + F + E +K + T+ ++L AC
Sbjct: 481 KDARQVFDRMIQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNAC 540
Query: 229 GGVDDDGNC--GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
+ G+ R++H + K G SD V LV Y KC DA VFE + K+N+
Sbjct: 541 A---NSGSLEWAREIHTLVRKGGFFSDTSVGNALVSTYAKCGSFSDASIVFEKMT-KRNV 596
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
SWNA++ G ++G +A + MK G++ L ACS
Sbjct: 597 ISWNAIIGGSAQHGRGQDALQLFERMKMEGVKPDIVTFVSLLSACS 642
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 75/289 (25%), Positives = 132/289 (45%), Gaps = 22/289 (7%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRV---NIKPTLLFLNRLLLMHVSCGQLDTARQLF 69
YT ++ C+ S A E I ++V + N L+ M+ CG + ARQ+F
Sbjct: 432 YTSILNACS----SPAALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVKDARQVF 487
Query: 70 DEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVC 129
D M RD ++ MI GY +E + LF + + + + + +L AC
Sbjct: 488 DRMIQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTY-----INMLNACAN 542
Query: 130 TMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAK 189
+ ++E +++H L+ K G + S+ +L++ Y K DA VF ++ + N + W A
Sbjct: 543 SGSLEWAREIHTLVRKGGFFSDTSVGNALVSTYAKCGSFSDASIVFEKMTKRNVISWNAI 602
Query: 190 IVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--GGVDDDGN---CGRQMHAN 244
I + + G F+ M E +K + TF S+L AC G+ ++G C
Sbjct: 603 IGGSAQHGRGQDALQLFERMKMEGVKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSQDFA 662
Query: 245 IVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
I+ + E+ C +VD+ G+ L +AE + + + + N W A+L
Sbjct: 663 IIP----TIEHYGC-MVDLLGRAGQLDEAEALIKTMPFQANTRIWGALL 706
>gi|356506884|ref|XP_003522204.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g47840-like [Glycine max]
Length = 752
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 82/284 (28%), Positives = 135/284 (47%), Gaps = 7/284 (2%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
+N L M+ CG+ D +LF++M + D SW +I YV + + + F M K
Sbjct: 296 INTLATMYNKCGKADYVMRLFEKMKMPDVVSWTTLITTYVQKGEEEHAVEAFKRMRKSNV 355
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
F A V+ AC + G+Q+HG + +LG +S+ S++ Y K L
Sbjct: 356 SPNKYTFAA-----VISACANLAIAKWGEQIHGHVLRLGLVDALSVANSIVTLYSKSGLL 410
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+ A VF + R + + W+ I + G+ + F+ M RE K N + SSVL C
Sbjct: 411 KSASLVFHGITRKDIISWSTIIAVYSQGGYAKEAFDYLSWMRREGPKPNEFALSSVLSVC 470
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
G + G+Q+HA+++ IG++ + V L+ MY KC + +A ++F + NI S
Sbjct: 471 GSMALLEQ-GKQVHAHVLCIGIDHEAMVHSALISMYSKCGSVEEASKIFNGM-KINNIIS 528
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
W AM+ GY +G EA + + G++ + ACS
Sbjct: 529 WTAMINGYAEHGYSQEAINLFEKISSVGLKPDYVTFIGVLTACS 572
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 84/295 (28%), Positives = 141/295 (47%), Gaps = 10/295 (3%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
+L LN L V GQL +R +FD+M RD SW +I GYV+ +D E + LF+ M
Sbjct: 90 MLELNSELKQLVKQGQLCKSRYMFDKMTHRDEISWTTLIAGYVNASDSYEALILFSNMWV 149
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
+ L ++I LKAC +N+ G+ +HG K G ++ ++ +LI+ Y K
Sbjct: 150 QPG----LQRDQFMISVALKACGLGVNICFGELLHGFSVKSGLINSVFVSSALIDMYMKV 205
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
+E VF ++ + N V WTA I G+ + F EM ++ +S+TF+ L
Sbjct: 206 GKIEQGCRVFKKMTKRNVVSWTAIIAGLVHAGYNMEALLYFSEMWISKVGYDSHTFAIAL 265
Query: 226 KACGGVDDDG--NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
KA D + G+ +H +K G + +V L MY KC R+FE +
Sbjct: 266 KASA---DSSLLHHGKAIHTQTIKQGFDESSFVINTLATMYNKCGKADYVMRLFEKM-KM 321
Query: 284 KNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASK 338
++ SW ++ Y++ G A + M+ S + + + AC++++ +K
Sbjct: 322 PDVVSWTTLITTYVQKGEEEHAVEAFKRMRKSNVSPNKYTFAAVISACANLAIAK 376
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 82/308 (26%), Positives = 143/308 (46%), Gaps = 13/308 (4%)
Query: 31 ELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDV 90
ELL+ + + ++ + L+ M++ G+++ ++F +M R+ SW +I G V
Sbjct: 177 ELLHGFSVKSGLINSVFVSSALIDMYMKVGKIEQGCRVFKKMTKRNVVSWTAIIAGLVHA 236
Query: 91 ADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSR 150
E + F+EM K G+ F LKA + + GK +H K G
Sbjct: 237 GYNMEALLYFSEMWISKVGYDSHTF-----AIALKASADSSLLHHGKAIHTQTIKQGFDE 291
Query: 151 NISLTGSLINFYGKFRCLEDADFV---FSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFK 207
+ + +L Y K C AD+V F ++K + V WT I ++G FK
Sbjct: 292 SSFVINTLATMYNK--C-GKADYVMRLFEKMKMPDVVSWTTLITTYVQKGEEEHAVEAFK 348
Query: 208 EMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKC 267
M + + N YTF++V+ AC + G Q+H +++++GL V +V +Y K
Sbjct: 349 RMRKSNVSPNKYTFAAVISACANL-AIAKWGEQIHGHVLRLGLVDALSVANSIVTLYSKS 407
Query: 268 RLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDL 327
LL+ A VF I +K+I SW+ ++ Y + G EA +L M+ G + E ++ +
Sbjct: 408 GLLKSASLVFHGIT-RKDIISWSTIIAVYSQGGYAKEAFDYLSWMRREGPKPNEFALSSV 466
Query: 328 RIACSSIS 335
C S++
Sbjct: 467 LSVCGSMA 474
>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
Length = 694
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 91/288 (31%), Positives = 148/288 (51%), Gaps = 16/288 (5%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ +VS G +++A++LFDE+P +D SW MI GYV+ +Y+E + LF EMM M
Sbjct: 161 LIAGYVSRGYIESAQKLFDEIPGKDVVSWNAMISGYVETGNYKEALELFKEMMM-----M 215
Query: 112 LLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
V P +V V+ AC + ++ELG+ VH + G + N+ + +LI+ Y KF +E
Sbjct: 216 TNVRPDESTMVTVVSACAQSDSIELGRHVHSWINDHGFASNLKIVNALIDLYSKFGEVET 275
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC-- 228
A +F L + + W I + + F+EM R N T S+L AC
Sbjct: 276 ACELFDGLWNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAH 335
Query: 229 -GGVDDDGNCGRQMHANI---VKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
G +D GR +H I +K + + +Q L+DMY KC + A++VF+ + +
Sbjct: 336 LGAID----IGRWIHVYINKKLKGVVTNVSSLQTSLIDMYAKCGDIDAAQQVFDSSMSNR 391
Query: 285 NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
++++WNAM+ G+ +G A M+ +GI+ + L ACS
Sbjct: 392 SLSTWNAMISGFAMHGRANAAFDIFSRMRMNGIEPDDITFVGLLSACS 439
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 74/307 (24%), Positives = 128/307 (41%), Gaps = 39/307 (12%)
Query: 65 ARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVL 124
A +FD + + W M G+ +D + L+ M+ + L+ ++ +L
Sbjct: 42 AISVFDTIQEPNLLIWNTMFRGHALSSDPVSALKLYLVMIS-----LGLLPDSYTFPFLL 96
Query: 125 KACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFS-------- 176
K+C + + G+Q+HG + KLG +I + SLI+ Y + LEDA VF
Sbjct: 97 KSCAKSKIRKEGQQIHGHVLKLGFDLDIYVHTSLISMYAQNGRLEDARKVFDISSHRDVV 156
Query: 177 -----------------------QLKRHNTVVWTAKIVNNCREGHFHQVFNDFKE-MGRE 212
++ + V W A I G++ + FKE M
Sbjct: 157 SYTALIAGYVSRGYIESAQKLFDEIPGKDVVSWNAMISGYVETGNYKEALELFKEMMMMT 216
Query: 213 RIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRD 272
++ + T +V+ AC D GR +H+ I G S+ + L+D+Y K +
Sbjct: 217 NVRPDESTMVTVVSACAQ-SDSIELGRHVHSWINDHGFASNLKIVNALIDLYSKFGEVET 275
Query: 273 AERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
A +F+ + + K++ SWN ++ GY LY EA M SG + + + AC+
Sbjct: 276 ACELFDGLWN-KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACA 334
Query: 333 SISASKI 339
+ A I
Sbjct: 335 HLGAIDI 341
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 79/299 (26%), Positives = 139/299 (46%), Gaps = 27/299 (9%)
Query: 7 PITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVN---IKPTLLFLNRLLLMHVSCGQLD 63
P + M T ++ C Q DS EL H+ +N L +N L+ ++ G+++
Sbjct: 220 PDESTMVT-VVSACA-QSDS---IELGRHVHSWINDHGFASNLKIVNALIDLYSKFGEVE 274
Query: 64 TARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCV 123
TA +LFD + +D SW +I GY + Y+E + LF EM++ + + ++ +
Sbjct: 275 TACELFDGLWNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVT-----MLSI 329
Query: 124 LKACVCTMNMELGKQVHGLLFK--LGSSRNI-SLTGSLINFYGKFRCLEDADFVF-SQLK 179
L AC +++G+ +H + K G N+ SL SLI+ Y K ++ A VF S +
Sbjct: 330 LPACAHLGAIDIGRWIHVYINKKLKGVVTNVSSLQTSLIDMYAKCGDIDAAQQVFDSSMS 389
Query: 180 RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--GGVDDDGNC 237
+ W A I G + F+ F M I+ + TF +L AC G+ D
Sbjct: 390 NRSLSTWNAMISGFAMHGRANAAFDIFSRMRMNGIEPDDITFVGLLSACSHSGMLD---L 446
Query: 238 GRQMHANIVKIGLESD---EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
GR + ++ + G E E+ C ++D+ G L ++AE + + + + W ++L
Sbjct: 447 GRNIFRSMTR-GYEITPKLEHYGC-MIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLL 503
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/230 (23%), Positives = 92/230 (40%), Gaps = 35/230 (15%)
Query: 137 KQVHGLLFKLGSSRNISLTGSLINF---YGKFRCLEDADFVFSQLKRHNTVVWTAKIVNN 193
+ +H + K G L+ F F A VF ++ N ++W +
Sbjct: 5 RXIHAQMIKTGLHNTNYALSKLLEFCVVSPHFDGFPYAISVFDTIQEPNLLIWNTMFRGH 64
Query: 194 CREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESD 253
+ M + +SYTF +LK+C G+Q+H +++K+G + D
Sbjct: 65 ALSSDPVSALKLYLVMISLGLLPDSYTFPFLLKSCAKSKIRKE-GQQIHGHVLKLGFDLD 123
Query: 254 EYVQCGLVDMYGKCRLLRDAERVFELI------------------------------VDK 283
YV L+ MY + L DA +VF++ +
Sbjct: 124 IYVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTALIAGYVSRGYIESAQKLFDEIPG 183
Query: 284 KNIASWNAMLVGYIRNGLYVEATK-FLYLMKASGIQIQESLINDLRIACS 332
K++ SWNAM+ GY+ G Y EA + F +M + ++ ES + + AC+
Sbjct: 184 KDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACA 233
>gi|255571614|ref|XP_002526753.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533942|gb|EEF35667.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 818
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 92/305 (30%), Positives = 150/305 (49%), Gaps = 10/305 (3%)
Query: 11 DMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFD 70
D Y L+ EC K + HI K + P++ RL++ + C L AR +FD
Sbjct: 476 DGYNTLLNECVNNKAIREGQRVHAHIIKTYYL-PSVYLRTRLIVFYTKCDLLMDARHVFD 534
Query: 71 EMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCVLKACVC 129
EM R+ SW MI GY E + LF M++ + P + + VL +C
Sbjct: 535 EMSERNVVSWTAMISGYSRRGFAFETLHLFVRMLRSD------IEPNEFTLATVLTSCTD 588
Query: 130 TMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAK 189
ELG+Q+H L+ K +I + SL++ Y K + +A VF L + V TA
Sbjct: 589 ASGSELGRQIHSLIIKCNYDSHIFVGSSLLDMYAKAGRILEARMVFESLPERDVVSCTAI 648
Query: 190 IVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIG 249
I + G + F+ + RE + N T++SVL + G+ + G+Q+H+++++
Sbjct: 649 ISGYAQLGLDEEALELFRRLEREGLSSNCVTYASVLTSLSGLAALDH-GKQVHSHVLRRE 707
Query: 250 LESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFL 309
L +Q ++DMY KC L A R+F+ + ++ + SWNAMLVGY ++G+ E +
Sbjct: 708 LPFYVVLQNSMIDMYSKCGSLNYARRIFDSM-PERTVISWNAMLVGYGKHGMGREVVELF 766
Query: 310 YLMKA 314
LM+
Sbjct: 767 KLMRT 771
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 100/197 (50%), Gaps = 4/197 (2%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
+L CV + G++VH + K ++ L LI FY K L DA VF ++ N
Sbjct: 481 LLNECVNNKAIREGQRVHAHIIKTYYLPSVYLRTRLIVFYTKCDLLMDARHVFDEMSERN 540
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGN-CGRQM 241
V WTA I R G + + F M R I+ N +T ++VL +C D G+ GRQ+
Sbjct: 541 VVSWTAMISGYSRRGFAFETLHLFVRMLRSDIEPNEFTLATVLTSC--TDASGSELGRQI 598
Query: 242 HANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGL 301
H+ I+K +S +V L+DMY K + +A VFE + ++++ S A++ GY + GL
Sbjct: 599 HSLIIKCNYDSHIFVGSSLLDMYAKAGRILEARMVFESL-PERDVVSCTAIISGYAQLGL 657
Query: 302 YVEATKFLYLMKASGIQ 318
EA + ++ G+
Sbjct: 658 DEEALELFRRLEREGLS 674
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 101/226 (44%), Gaps = 15/226 (6%)
Query: 16 LIKECTFQKDSAGAFELLNHIRK---RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
++ CT D++G+ EL I + N + + LL M+ G++ AR +F+ +
Sbjct: 582 VLTSCT---DASGS-ELGRQIHSLIIKCNYDSHIFVGSSLLDMYAKAGRILEARMVFESL 637
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN 132
P RD S +I GY + +E + LF + + + + + VL +
Sbjct: 638 PERDVVSCTAIISGYAQLGLDEEALELFRRLEREGLSSNCVTYAS-----VLTSLSGLAA 692
Query: 133 MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192
++ GKQVH + + + L S+I+ Y K L A +F + + W A +V
Sbjct: 693 LDHGKQVHSHVLRRELPFYVVLQNSMIDMYSKCGSLNYARRIFDSMPERTVISWNAMLVG 752
Query: 193 NCREGHFHQVFNDFKEMGRE-RIKKNSYTFSSVLKAC--GGVDDDG 235
+ G +V FK M E ++K +S T +VL C GG +D G
Sbjct: 753 YGKHGMGREVVELFKLMRTENKVKPDSVTILAVLSGCSHGGFEDKG 798
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 54/102 (52%), Gaps = 1/102 (0%)
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYI 297
G+++HA+I+K Y++ L+ Y KC LL DA VF+ + ++N+ SW AM+ GY
Sbjct: 494 GQRVHAHIIKTYYLPSVYLRTRLIVFYTKCDLLMDARHVFDEM-SERNVVSWTAMISGYS 552
Query: 298 RNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKI 339
R G E M S I+ E + + +C+ S S++
Sbjct: 553 RRGFAFETLHLFVRMLRSDIEPNEFTLATVLTSCTDASGSEL 594
>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 723
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 82/284 (28%), Positives = 139/284 (48%), Gaps = 8/284 (2%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ CG + AR +FD +P ++ +W ++I GY + L M + +
Sbjct: 189 LVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPN 248
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+ F + +L+ C +E GK+VH + + G R + + SLI Y K LE+A
Sbjct: 249 KITFAS-----ILQGCTTPAALEHGKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEA 303
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
+FS L + V WTA + + G + N F+ M ++ IK + TF+SVL +C
Sbjct: 304 RKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSP 363
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
G+++H +V G D Y+Q LV MY KC + DA VF + ++N+ +W A
Sbjct: 364 AFLQE-GKRIHQQLVHAGYNLDVYLQSALVSMYAKCGSMDDASLVFNQM-SERNVVAWTA 421
Query: 292 MLVG-YIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
++ G ++G EA ++ MK GI+ + + AC+ +
Sbjct: 422 IITGCCAQHGRCREALEYFDQMKKQGIKPDKVTFTSVLSACTHV 465
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 75/252 (29%), Positives = 127/252 (50%), Gaps = 12/252 (4%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L +N L+ M+ CG L+ AR+LF ++P RD +W M+ GY + + E I LF M +
Sbjct: 284 LWVVNSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQ 343
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
+ + F + VL +C ++ GK++H L G + ++ L +L++ Y K
Sbjct: 344 QGIKPDKMTFTS-----VLTSCSSPAFLQEGKRIHQQLVHAGYNLDVYLQSALVSMYAKC 398
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNC-REGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
++DA VF+Q+ N V WTA I C + G + F +M ++ IK + TF+SV
Sbjct: 399 GSMDDASLVFNQMSERNVVAWTAIITGCCAQHGRCREALEYFDQMKKQGIKPDKVTFTSV 458
Query: 225 LKACG--GVDDDGNCGRQMHANIVKIGLES-DEYVQCGLVDMYGKCRLLRDAERVFELIV 281
L AC G+ ++G + + + G++ E+ C VD+ G+ L +AE V +
Sbjct: 459 LSACTHVGLVEEGR--KHFRSMYLDYGIKPMVEHYSC-FVDLLGRAGHLEEAENVILSMP 515
Query: 282 DKKNIASWNAML 293
+ W A+L
Sbjct: 516 FIPGPSVWGALL 527
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 84/326 (25%), Positives = 145/326 (44%), Gaps = 8/326 (2%)
Query: 8 ITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQ 67
+ +D++ L++EC + E+ I K I+P N LL M+ CG L AR+
Sbjct: 45 VYSDVFRGLLQECARLRSLEQGREVHAAILKS-GIQPNRYLENTLLSMYAKCGSLTDARR 103
Query: 68 LFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKAC 127
+FD + R+ SW MI +V E + M + F V +L A
Sbjct: 104 VFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPDKVTF-----VSLLNAF 158
Query: 128 VCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWT 187
++LG++VH + + G + SL+ Y K + A +F +L N V WT
Sbjct: 159 TNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWT 218
Query: 188 AKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVK 247
I ++G + M + + N TF+S+L+ C G+++H I++
Sbjct: 219 LLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQGC-TTPAALEHGKKVHRYIIQ 277
Query: 248 IGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATK 307
G + +V L+ MY KC L +A ++F + +++ +W AM+ GY + G + EA
Sbjct: 278 SGYGRELWVVNSLITMYCKCGGLEEARKLFSDL-PHRDVVTWTAMVTGYAQLGFHDEAIN 336
Query: 308 FLYLMKASGIQIQESLINDLRIACSS 333
M+ GI+ + + +CSS
Sbjct: 337 LFRRMQQQGIKPDKMTFTSVLTSCSS 362
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 101/214 (47%), Gaps = 2/214 (0%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
+L+ C ++E G++VH + K G N L +L++ Y K L DA VF ++ N
Sbjct: 53 LLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDSIRDRN 112
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
V WTA I + F ++ M K + TF S+L A + G+++H
Sbjct: 113 IVSWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPDKVTFVSLLNAFTN-PELLQLGQKVH 171
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
IV+ GLE + V LV MY KC + A +F+ + +K N+ +W ++ GY + G
Sbjct: 172 MEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLPEK-NVVTWTLLIAGYAQQGQV 230
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
A + L M+ + + + + C++ +A
Sbjct: 231 DVALELLETMQQAEVAPNKITFASILQGCTTPAA 264
>gi|356546093|ref|XP_003541466.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33680-like [Glycine max]
Length = 775
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 94/291 (32%), Positives = 137/291 (47%), Gaps = 13/291 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+ LL M+ G + AR LFDEMP R+ SWA MI GY E LF M +KG
Sbjct: 155 SSLLNMYCKTGLVFEARDLFDEMPERNAVSWATMISGYASQELADEAFELFKLMRHEEKG 214
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
F + VL A C M + G+QVH L K G +S+ +L+ Y K LE
Sbjct: 215 KNENEF---VFTSVLSALTCYMLVNTGRQVHSLAMKNGLVCIVSVANALVTMYVKCGSLE 271
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
DA F N++ W+A + + G + F +M + + +T V+ AC
Sbjct: 272 DALKTFELSGNKNSITWSAMVTGFAQFGDSDKALKLFYDMHQSGELPSEFTLVGVINACS 331
Query: 230 GVDDDGNC----GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
C GRQMH +K+G E YV LVDMY KC + DA + FE I + +
Sbjct: 332 DA-----CAIVEGRQMHGYSLKLGYELQLYVLSALVDMYAKCGSIVDARKGFECI-QQPD 385
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+ W +++ GY++NG Y A M+ G+ + + + ACS+++A
Sbjct: 386 VVLWTSIITGYVQNGDYEGALNLYGKMQLGGVIPNDLTMASVLKACSNLAA 436
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/285 (28%), Positives = 137/285 (48%), Gaps = 7/285 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+V CG L+ A + F+ ++ +W+ M+ G+ D + + LF +M + G
Sbjct: 258 NALVTMYVKCGSLEDALKTFELSGNKNSITWSAMVTGFAQFGDSDKALKLFYDM--HQSG 315
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ F +V V+ AC + G+Q+HG KLG + + +L++ Y K +
Sbjct: 316 ELPSEF---TLVGVINACSDACAIVEGRQMHGYSLKLGYELQLYVLSALVDMYAKCGSIV 372
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
DA F +++ + V+WT+ I + G + N + +M + N T +SVLKAC
Sbjct: 373 DARKGFECIQQPDVVLWTSIITGYVQNGDYEGALNLYGKMQLGGVIPNDLTMASVLKACS 432
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ + G+QMHA I+K + + L MY KC L D R+F + +++ SW
Sbjct: 433 NLAAL-DQGKQMHAGIIKYNFSLEIPIGSALSAMYAKCGSLDDGYRIF-WRMPARDVISW 490
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
NAM+ G +NG E + M G + +L ACS +
Sbjct: 491 NAMISGLSQNGRGNEGLELFEKMCLEGTKPDNVTFVNLLSACSHM 535
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 84/291 (28%), Positives = 127/291 (43%), Gaps = 8/291 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ ++ C A +FD + +D SW +I + + + + +
Sbjct: 49 NSLINLYAKCSHFSKANLVFDSINNKDVVSWNCLINAFSQQQAHAPSLHVMHLFRQLVMA 108
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
H +V A + V A + G+Q H L K S ++ SL+N Y K +
Sbjct: 109 HKTIVPNAHTLTGVFTAASTLSDSRAGRQAHALAVKTACSHDVFAASSLLNMYCKTGLVF 168
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKK--NSYTFSSVLKA 227
+A +F ++ N V W I + + F FK M E K N + F+SVL A
Sbjct: 169 EARDLFDEMPERNAVSWATMISGYASQELADEAFELFKLMRHEEKGKNENEFVFTSVLSA 228
Query: 228 --CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
C + N GRQ+H+ +K GL V LV MY KC L DA + FEL +K +
Sbjct: 229 LTCYMLV---NTGRQVHSLAMKNGLVCIVSVANALVTMYVKCGSLEDALKTFELSGNKNS 285
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
I +W+AM+ G+ + G +A K Y M SG E + + ACS A
Sbjct: 286 I-TWSAMVTGFAQFGDSDKALKLFYDMHQSGELPSEFTLVGVINACSDACA 335
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 112/253 (44%), Gaps = 11/253 (4%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L L+ L+ M+ CG + AR+ F+ + D W +I GYV DY+ + L+ +M
Sbjct: 355 LYVLSALVDMYAKCGSIVDARKGFECIQQPDVVLWTSIITGYVQNGDYEGALNLYGKM-- 412
Query: 106 RKKGHMLLVFPA-WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
+ V P + VLKAC ++ GKQ+H + K S I + +L Y K
Sbjct: 413 ----QLGGVIPNDLTMASVLKACSNLAALDQGKQMHAGIIKYNFSLEIPIGSALSAMYAK 468
Query: 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
L+D +F ++ + + W A I + G ++ F++M E K ++ TF ++
Sbjct: 469 CGSLDDGYRIFWRMPARDVISWNAMISGLSQNGRGNEGLELFEKMCLEGTKPDNVTFVNL 528
Query: 225 LKACG--GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282
L AC G+ D G +M + I + Y C +VD+ + L +A+ E
Sbjct: 529 LSACSHMGLVDRGWVYFKMMFDEFNIAPTVEHYA-C-MVDILSRAGKLHEAKEFIESATV 586
Query: 283 KKNIASWNAMLVG 295
+ W +L
Sbjct: 587 DHGLCLWRILLAA 599
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 94/200 (47%), Gaps = 12/200 (6%)
Query: 123 VLKACV-CTMNMEL--GKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
VL+A V CT + +L G+ +H + GS + + SLIN Y K A+ VF +
Sbjct: 13 VLRALVHCTRHKQLRKGRALHARILVTGSFSSTQIANSLINLYAKCSHFSKANLVFDSIN 72
Query: 180 RHNTVVWTAKIVNNCREGHFH----QVFNDFKE--MGRERIKKNSYTFSSVLKACGGVDD 233
+ V W ++N + H V + F++ M + I N++T + V A + D
Sbjct: 73 NKDVVSWNC-LINAFSQQQAHAPSLHVMHLFRQLVMAHKTIVPNAHTLTGVFTAASTLSD 131
Query: 234 DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
GRQ HA VK D + L++MY K L+ +A +F+ + + +N SW M+
Sbjct: 132 S-RAGRQAHALAVKTACSHDVFAASSLLNMYCKTGLVFEARDLFDEMPE-RNAVSWATMI 189
Query: 294 VGYIRNGLYVEATKFLYLMK 313
GY L EA + LM+
Sbjct: 190 SGYASQELADEAFELFKLMR 209
>gi|15231358|ref|NP_187990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75273354|sp|Q9LIC3.1|PP227_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial; Flags: Precursor
gi|9294022|dbj|BAB01925.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332641888|gb|AEE75409.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 628
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 87/270 (32%), Positives = 136/270 (50%), Gaps = 7/270 (2%)
Query: 44 PTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEM 103
P RLL+ + C L+ AR++ DEMP ++ SW MI Y E +T+FAEM
Sbjct: 85 PATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAEM 144
Query: 104 MKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYG 163
M+ F VL +C+ + LGKQ+HGL+ K +I + SL++ Y
Sbjct: 145 MRSDGKPNEFTF-----ATVLTSCIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYA 199
Query: 164 KFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSS 223
K +++A +F L + V TA I + G + F + E + N T++S
Sbjct: 200 KAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYAS 259
Query: 224 VLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
+L A G+ + G+Q H ++++ L +Q L+DMY KC L A R+F+ + ++
Sbjct: 260 LLTALSGLALLDH-GKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYARRLFDNMPER 318
Query: 284 KNIASWNAMLVGYIRNGLYVEATKFLYLMK 313
I SWNAMLVGY ++GL E + LM+
Sbjct: 319 TAI-SWNAMLVGYSKHGLGREVLELFRLMR 347
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 106/214 (49%), Gaps = 2/214 (0%)
Query: 122 CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH 181
+L AC+ + G++VH + K L L+ FYGK CLEDA V ++
Sbjct: 57 ALLNACLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEK 116
Query: 182 NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQM 241
N V WTA I + GH + F EM R K N +TF++VL +C G G+Q+
Sbjct: 117 NVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLG-LGKQI 175
Query: 242 HANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGL 301
H IVK +S +V L+DMY K +++A +FE + + +++ S A++ GY + GL
Sbjct: 176 HGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPE-RDVVSCTAIIAGYAQLGL 234
Query: 302 YVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
EA + + + + G+ L A S ++
Sbjct: 235 DEEALEMFHRLHSEGMSPNYVTYASLLTALSGLA 268
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 70/260 (26%), Positives = 114/260 (43%), Gaps = 18/260 (6%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL M+ GQ+ AR++F+ +P RD S +I GY + +E + +F + H
Sbjct: 194 LLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRL------HS 247
Query: 112 LLVFPAWIIVCVLKACVCTMNM-ELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
+ P ++ L + + + + GKQ H + + L SLI+ Y K L
Sbjct: 248 EGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSY 307
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRE-RIKKNSYTFSSVLKAC- 228
A +F + + W A +V + G +V F+ M E R+K ++ T +VL C
Sbjct: 308 ARRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCS 367
Query: 229 -GGVDDDG-NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELI--VDKK 284
G ++D G N M A ++ Y C +VDM G+ + +A FE I + K
Sbjct: 368 HGRMEDTGLNIFDGMVAGEYGTKPGTEHY-GC-IVDMLGRAGRIDEA---FEFIKRMPSK 422
Query: 285 NIASWNAMLVGYIRNGLYVE 304
A L+G R L V+
Sbjct: 423 PTAGVLGSLLGACRVHLSVD 442
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 84/200 (42%), Gaps = 16/200 (8%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ CG L AR+LFD MP R SW M+VGY +E + LF M K+
Sbjct: 293 NSLIDMYSKCGNLSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKR- 351
Query: 110 HMLLVFP-AWIIVCVLKACVCTMNMELGKQV-HGLLF-KLGSSRNISLTGSLINFYGKFR 166
V P A ++ VL C + G + G++ + G+ G +++ G+
Sbjct: 352 ----VKPDAVTLLAVLSGCSHGRMEDTGLNIFDGMVAGEYGTKPGTEHYGCIVDMLGRAG 407
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIK-----KNSYTF 221
+++A ++ T ++ CR H + + +GR I+ +Y
Sbjct: 408 RIDEAFEFIKRMPSKPTAGVLGSLLGACR---VHLSVDIGESVGRRLIEIEPENAGNYVI 464
Query: 222 SSVLKACGGVDDDGNCGRQM 241
S L A G D N R M
Sbjct: 465 LSNLYASAGRWADVNNVRAM 484
>gi|255583011|ref|XP_002532274.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528034|gb|EEF30114.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 631
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 85/269 (31%), Positives = 132/269 (49%), Gaps = 12/269 (4%)
Query: 20 CTFQKDSAGAFELLNHIRK------RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMP 73
CT S G+ E L R+ + N++ + N L+ M+ CG L+ AR++FD+M
Sbjct: 246 CTSILTSCGSLEALELGRQVHAYSIKGNVESDIFLQNGLIDMYAKCGSLNDARKVFDDMT 305
Query: 74 LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNM 133
+R+ S+ +I GY + E + LF EM H +L V +L A +
Sbjct: 306 IRNVVSYNALIEGYSTLEQLSEAMNLFREMR-----HGMLSPSFLTFVSLLGASATLSAL 360
Query: 134 ELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNN 193
ELGKQ+H L+ K G S I +LI+FY K CL DA VF ++ + VVW A +
Sbjct: 361 ELGKQIHALITKFGISMEIFAGSALIDFYSKCSCLMDARLVFDKMTEKDIVVWNAMLFGY 420
Query: 194 CREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESD 253
++ + + E+ K N TF+++ A + + G+Q H +I+K GL+S
Sbjct: 421 TQQLENEEALKLYTELQISEPKPNVVTFAALTTAASNLASLQH-GQQFHNHIIKTGLDSH 479
Query: 254 EYVQCGLVDMYGKCRLLRDAERVFELIVD 282
+ L+DMY KC L DA + F + D
Sbjct: 480 PFTTNSLIDMYAKCGSLEDARKAFGHVKD 508
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 102/337 (30%), Positives = 160/337 (47%), Gaps = 21/337 (6%)
Query: 8 ITTDMY--TCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTA 65
+ D Y + ++ C+ + G ++ H+ +R I+ + F+N L+ + G++ +A
Sbjct: 138 VVPDGYILSSVLGACSQLEFVQGGKQIHGHVLRR-GIEIDVSFVNVLIDFYTKSGKVQSA 196
Query: 66 RQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK---RKKGHMLLVFPAWIIVC 122
R+LFD M R+ SW MI GY+ + +E + LF EM + R G ++
Sbjct: 197 RKLFDGMADRNVISWTAMIAGYMQNSFDREAVKLFIEMTRLGRRPDG--------FVCTS 248
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
+L +C +ELG+QVH K +I L LI+ Y K L DA VF + N
Sbjct: 249 ILTSCGSLEALELGRQVHAYSIKGNVESDIFLQNGLIDMYAKCGSLNDARKVFDDMTIRN 308
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
V + A I + N F+EM + + TF S+L A + G+Q+H
Sbjct: 309 VVSYNALIEGYSTLEQLSEAMNLFREMRHGMLSPSFLTFVSLLGASATLSAL-ELGKQIH 367
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
A I K G+ + + L+D Y KC L DA VF+ + + K+I WNAML GY +
Sbjct: 368 ALITKFGISMEIFAGSALIDFYSKCSCLMDARLVFDKMTE-KDIVVWNAMLFGYTQQLEN 426
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIACSSISASKI 339
EA K LY + +QI E N + A + +AS +
Sbjct: 427 EEALK-LY----TELQISEPKPNVVTFAALTTAASNL 458
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 74/245 (30%), Positives = 128/245 (52%), Gaps = 7/245 (2%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ ++ G +D AR +FD + + +W +I V + + LF++M +
Sbjct: 82 LVDLYAKGGNIDEARLVFDGLLEKSAVTWTTIITACVKRGRSEVSLQLFSQMRETN---- 137
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+V +I+ VL AC ++ GKQ+HG + + G ++S LI+FY K ++ A
Sbjct: 138 -VVPDGYILSSVLGACSQLEFVQGGKQIHGHVLRRGIEIDVSFVNVLIDFYTKSGKVQSA 196
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
+F + N + WTA I + + F EM R + + + +S+L +CG +
Sbjct: 197 RKLFDGMADRNVISWTAMIAGYMQNSFDREAVKLFIEMTRLGRRPDGFVCTSILTSCGSL 256
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
+ GRQ+HA +K +ESD ++Q GL+DMY KC L DA +VF+ + +N+ S+NA
Sbjct: 257 EAL-ELGRQVHAYSIKGNVESDIFLQNGLIDMYAKCGSLNDARKVFDDMT-IRNVVSYNA 314
Query: 292 MLVGY 296
++ GY
Sbjct: 315 LIEGY 319
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 73/266 (27%), Positives = 127/266 (47%), Gaps = 9/266 (3%)
Query: 72 MPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCT 130
MP R+ SW+ ++ Y +E + +F + + + P +I+ V+ ACV
Sbjct: 1 MPERNLISWSSVVSMYSKRGFSEEALLVFLDFKRCCNEN-----PNEYILASVISACV-Q 54
Query: 131 MNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKI 190
+ + KQ+HG K G RN+ + SL++ Y K +++A VF L + V WT I
Sbjct: 55 VGGSIDKQMHGFAVKSGFDRNVYVGTSLVDLYAKGGNIDEARLVFDGLLEKSAVTWTTII 114
Query: 191 VNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGL 250
+ G F +M + + Y SSVL AC ++ G+Q+H ++++ G+
Sbjct: 115 TACVKRGRSEVSLQLFSQMRETNVVPDGYILSSVLGACSQLEFV-QGGKQIHGHVLRRGI 173
Query: 251 ESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLY 310
E D L+D Y K ++ A ++F+ + D +N+ SW AM+ GY++N EA K
Sbjct: 174 EIDVSFVNVLIDFYTKSGKVQSARKLFDGMAD-RNVISWTAMIAGYMQNSFDREAVKLFI 232
Query: 311 LMKASGIQIQESLINDLRIACSSISA 336
M G + + + +C S+ A
Sbjct: 233 EMTRLGRRPDGFVCTSILTSCGSLEA 258
>gi|359483750|ref|XP_002269533.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g20770-like [Vitis vinifera]
Length = 847
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 95/362 (26%), Positives = 163/362 (45%), Gaps = 40/362 (11%)
Query: 9 TTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQL 68
T Y + + K + A +L++ R + NRL+ + C +D +R+L
Sbjct: 3 TKTTYLASLLQTCIDKKAHLAGKLIHAHMLRSRLSDDTFLSNRLIEFYAKCNAIDASRRL 62
Query: 69 FDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR---------------------- 106
FD+MP RD +W ++ Y ++ ++ LFAEM +R
Sbjct: 63 FDQMPKRDIYTWNAILGAYCKASELEDAHVLFAEMPERNIVSWNTLISALTRNGFEQKAL 122
Query: 107 ----KKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFY 162
+ V + + VL AC +++E G++ HG+ K+G NI + +L+ Y
Sbjct: 123 GVYYRMSREGFVPTHFTLASVLSACGALVDVECGRRCHGISIKIGLDNNIYVGNALLGMY 182
Query: 163 GKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFS 222
K RC+ DA F + N V +TA + ++ F F+ M R RI +S + S
Sbjct: 183 AKCRCIGDAIQAFGDVPEPNEVSFTAMMGGLADSDQVNEAFRLFRLMLRNRIHVDSVSLS 242
Query: 223 SVLKACG-------GVDDDGNC------GRQMHANIVKIGLESDEYVQCGLVDMYGKCRL 269
SVL C G+ D + G+Q+H +K G ESD ++ L+DMY K
Sbjct: 243 SVLGVCSRGGCGEFGLHDSNDVLSSDVHGQQVHCLTIKHGFESDLHLNNSLLDMYAKNGN 302
Query: 270 LRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRI 329
+ AE +F + + + ++ SWN M+ GY + +A ++L M+ G + E ++ +
Sbjct: 303 MDSAEMIF-VNMPEVSVVSWNVMIAGYGQKSQSSKAIEYLQRMQYHGFEPDEITYVNMLV 361
Query: 330 AC 331
AC
Sbjct: 362 AC 363
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 84/311 (27%), Positives = 144/311 (46%), Gaps = 10/311 (3%)
Query: 23 QKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAV 82
+ S+ A E L ++ +P + +L+ + G ++ RQ+FD M +SW
Sbjct: 331 KSQSSKAIEYLQRMQYH-GFEPDEITYVNMLVACIKSGDIEAGRQMFDGMSSPSLSSWNT 389
Query: 83 MIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHG 141
++ GY +++E + LF EM R V P + +L + M +E G+QVH
Sbjct: 390 ILSGYSQNENHKEAVKLFREMQFRS------VHPDRTTLAIILSSLAGMMLLEGGRQVHA 443
Query: 142 LLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQ 201
+ K +I L LI Y K +E A +F ++ + V W + + +
Sbjct: 444 VSQKAVFRTDIYLASGLIGMYSKCGKVEMAKRIFDRIAELDIVCWNSMMAGLSLNSLDKE 503
Query: 202 VFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLV 261
F FK+M + + + +++++VL C + GRQ+H+ I + G +D +V L+
Sbjct: 504 AFTFFKKMREKGMFPSQFSYATVLSCCAKLSSLSQ-GRQVHSQIAREGYMNDAFVGSALI 562
Query: 262 DMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQE 321
DMY KC + A VF++++ KN +WN M+ GY +NG EA M SG +
Sbjct: 563 DMYSKCGDVDAARWVFDMML-GKNTVTWNEMIHGYAQNGCGDEAVLLYEDMIGSGEKPDG 621
Query: 322 SLINDLRIACS 332
+ ACS
Sbjct: 622 ITFVAVLTACS 632
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 91/190 (47%), Gaps = 2/190 (1%)
Query: 143 LFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQV 202
LF R+I +++ Y K LEDA +F+++ N V W I R G +
Sbjct: 62 LFDQMPKRDIYTWNAILGAYCKASELEDAHVLFAEMPERNIVSWNTLISALTRNGFEQKA 121
Query: 203 FNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVD 262
+ M RE +T +SVL ACG + D CGR+ H +KIGL+++ YV L+
Sbjct: 122 LGVYYRMSREGFVPTHFTLASVLSACGALVDV-ECGRRCHGISIKIGLDNNIYVGNALLG 180
Query: 263 MYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQES 322
MY KCR + DA + F V + N S+ AM+ G + EA + LM + I +
Sbjct: 181 MYAKCRCIGDAIQAFG-DVPEPNEVSFTAMMGGLADSDQVNEAFRLFRLMLRNRIHVDSV 239
Query: 323 LINDLRIACS 332
++ + CS
Sbjct: 240 SLSSVLGVCS 249
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 68/267 (25%), Positives = 123/267 (46%), Gaps = 23/267 (8%)
Query: 36 IRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQE 95
+ ++ + + + L+ M+ CG+++ A+++FD + D W M+ G + +E
Sbjct: 444 VSQKAVFRTDIYLASGLIGMYSKCGKVEMAKRIFDRIAELDIVCWNSMMAGLSLNSLDKE 503
Query: 96 CITLFAEMMKRKKGHMLLVFPA-WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISL 154
T F +M R+KG +FP+ + VL C ++ G+QVH + + G + +
Sbjct: 504 AFTFFKKM--REKG----MFPSQFSYATVLSCCAKLSSLSQGRQVHSQIAREGYMNDAFV 557
Query: 155 TGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERI 214
+LI+ Y K ++ A +VF + NTV W I + G + +++M
Sbjct: 558 GSALIDMYSKCGDVDAARWVFDMMLGKNTVTWNEMIHGYAQNGCGDEAVLLYEDMIGSGE 617
Query: 215 KKNSYTFSSVLKAC--GGVDDDG----NCGRQMHANIVKIGLES--DEYVQCGLVDMYGK 266
K + TF +VL AC G+ D G N +Q H G+E D Y C ++D G+
Sbjct: 618 KPDGITFVAVLTACSHSGLVDTGIKIFNSMQQEH------GVEPLVDHYT-C-IIDSLGR 669
Query: 267 CRLLRDAERVFELIVDKKNIASWNAML 293
L +AE + + + K + W +L
Sbjct: 670 AGRLHEAEVLIDKMPCKYDPIIWEVLL 696
>gi|302798965|ref|XP_002981242.1| hypothetical protein SELMODRAFT_113974 [Selaginella moellendorffii]
gi|300151296|gb|EFJ17943.1| hypothetical protein SELMODRAFT_113974 [Selaginella moellendorffii]
Length = 734
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 92/309 (29%), Positives = 145/309 (46%), Gaps = 14/309 (4%)
Query: 28 GAFELLNHIRKRVNIKPTL----LFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVM 83
G E I KRV P++ + N L+ M+ CG + ++FD MP ++ SW M
Sbjct: 126 GDLEQGREIHKRVLESPSIASDVVVQNSLVTMYARCGSVLEGIKIFDAMPRKNLVSWNAM 185
Query: 84 IVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLL 143
I +V DY E MKR++ L ++ +L AC N+ELG +H +
Sbjct: 186 ISAFVQC-DYPEQALELYHRMKRER----LEPNGFVFASLLTACASLGNLELGSSIHQRI 240
Query: 144 FKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVF 203
LG R+I + +LIN Y K C+++A VFS L + WT+ I + G + F
Sbjct: 241 TSLGLQRDIVMENALINMYSKCGCMDEALEVFSGLATRDVFTWTSMIAGYAQLGFGSEAF 300
Query: 204 NDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDM 263
+ M R+ + S TF ++L AC ++ G+ +H + G ES V+ L+ M
Sbjct: 301 AFYDGMRRDCVSPTSATFVALLSACSTLEQ----GKHLHEEVKAFGFESITVVETALMFM 356
Query: 264 YGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESL 323
Y +C L DAE +F + +K+ SW+AM+ + + G +A M G+Q+
Sbjct: 357 YSRCGSLEDAEFLFAKM-QQKDYVSWSAMVTSHAQFGDPGKALTLFRQMILEGMQLSLPT 415
Query: 324 INDLRIACS 332
ACS
Sbjct: 416 FCSALQACS 424
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 84/317 (26%), Positives = 154/317 (48%), Gaps = 21/317 (6%)
Query: 5 CLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRV---NIKPTLLFLNRLLLMHVSCGQ 61
C+ T+ + L+ C+ E H+ + V + + L+ M+ CG
Sbjct: 310 CVSPTSATFVALLSACS-------TLEQGKHLHEEVKAFGFESITVVETALMFMYSRCGS 362
Query: 62 LDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIV 121
L+ A LF +M +D+ SW+ M+ + D + +TLF +M+ M L P +
Sbjct: 363 LEDAEFLFAKMQQKDYVSWSAMVTSHAQFGDPGKALTLFRQMILEG---MQLSLPTF--C 417
Query: 122 CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH 181
L+AC + L K + L+ G + S+ L++ Y K +E+A +F +++
Sbjct: 418 SALQACSLKRDSRLSKTIRELIDWSGIDKMDSIRADLVSAYSKCGDMEEARKIFDRMESR 477
Query: 182 NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQM 241
+ + WT I ++G F M E ++ +S TFSSVL+AC ++D GR++
Sbjct: 478 DVLTWTVMIKGYAQQGDSKAALELFHRMKPEGVEPDSVTFSSVLQACSNLED----GREV 533
Query: 242 HANIVKI-GLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
HA I+ G + +++ GL++MY +C +RDA ++FE + D+ + SW+A++ R+G
Sbjct: 534 HARILAAQGGKMSDFLGNGLINMYARCGSMRDARQIFESM-DRSSRISWSAIMTLCARHG 592
Query: 301 LYVEATKFLYLMKASGI 317
+ + LM G+
Sbjct: 593 QHDDIIDTYRLMVNEGV 609
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 85/330 (25%), Positives = 156/330 (47%), Gaps = 18/330 (5%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLL-MHVSCGQLDTARQLFDE 71
Y L++EC +++ + L + +R+ + +L R ++ M+ CG L A+ FDE
Sbjct: 17 YARLLQECCSRRNVSEGRRLHDDLRRSGYGDSS--YLRRCVVQMYAKCGCLADAKAAFDE 74
Query: 72 MPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTM 131
+ ++ W +MI GY +E + LF +M G +I L AC
Sbjct: 75 IADKNDFVWNLMISGYARSGKNREALELFHKMDIPPNG--------FIFASALAACAGLG 126
Query: 132 NMELGKQVHGLLFKLGS-SRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKI 190
++E G+++H + + S + ++ + SL+ Y + + + +F + R N V W A I
Sbjct: 127 DLEQGREIHKRVLESPSIASDVVVQNSLVTMYARCGSVLEGIKIFDAMPRKNLVSWNAMI 186
Query: 191 VNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGN--CGRQMHANIVKI 248
+ + Q + M RER++ N + F+S+L AC + GN G +H I +
Sbjct: 187 SAFVQCDYPEQALELYHRMKRERLEPNGFVFASLLTACASL---GNLELGSSIHQRITSL 243
Query: 249 GLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKF 308
GL+ D ++ L++MY KC + +A VF + +++ +W +M+ GY + G EA F
Sbjct: 244 GLQRDIVMENALINMYSKCGCMDEALEVFSGLA-TRDVFTWTSMIAGYAQLGFGSEAFAF 302
Query: 309 LYLMKASGIQIQESLINDLRIACSSISASK 338
M+ + + L ACS++ K
Sbjct: 303 YDGMRRDCVSPTSATFVALLSACSTLEQGK 332
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/327 (24%), Positives = 159/327 (48%), Gaps = 19/327 (5%)
Query: 12 MYTCLIKECTFQKDSAGAFELLNHIRKRVN---IKPTLLFLNRLLLMHVSCGQLDTARQL 68
++ L+ C S G EL + I +R+ ++ ++ N L+ M+ CG +D A ++
Sbjct: 216 VFASLLTACA----SLGNLELGSSIHQRITSLGLQRDIVMENALINMYSKCGCMDEALEV 271
Query: 69 FDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCVLKAC 127
F + RD +W MI GY + E F + M+R V P + V +L AC
Sbjct: 272 FSGLATRDVFTWTSMIAGYAQLGFGSEAFA-FYDGMRRD-----CVSPTSATFVALLSAC 325
Query: 128 VCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWT 187
+E GK +H + G + +L+ Y + LEDA+F+F+++++ + V W+
Sbjct: 326 S---TLEQGKHLHEEVKAFGFESITVVETALMFMYSRCGSLEDAEFLFAKMQQKDYVSWS 382
Query: 188 AKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVK 247
A + ++ + G + F++M E ++ + TF S L+AC + D + + I
Sbjct: 383 AMVTSHAQFGDPGKALTLFRQMILEGMQLSLPTFCSALQACS-LKRDSRLSKTIRELIDW 441
Query: 248 IGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATK 307
G++ + ++ LV Y KC + +A ++F+ + + +++ +W M+ GY + G A +
Sbjct: 442 SGIDKMDSIRADLVSAYSKCGDMEEARKIFDRM-ESRDVLTWTVMIKGYAQQGDSKAALE 500
Query: 308 FLYLMKASGIQIQESLINDLRIACSSI 334
+ MK G++ + + ACS++
Sbjct: 501 LFHRMKPEGVEPDSVTFSSVLQACSNL 527
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 76/298 (25%), Positives = 130/298 (43%), Gaps = 23/298 (7%)
Query: 3 NLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVN---IKPTLLFLNRLLLMHVSC 59
L LP + ++ C+ ++DS L IR+ ++ I L+ + C
Sbjct: 410 QLSLPT----FCSALQACSLKRDS----RLSKTIRELIDWSGIDKMDSIRADLVSAYSKC 461
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI 119
G ++ AR++FD M RD +W VMI GY D + + LF M + F +
Sbjct: 462 GDMEEARKIFDRMESRDVLTWTVMIKGYAQQGDSKAALELFHRMKPEGVEPDSVTFSS-- 519
Query: 120 IVCVLKACVCTMNMELGKQVHG-LLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL 178
VL+AC N+E G++VH +L G + L LIN Y + + DA +F +
Sbjct: 520 ---VLQACS---NLEDGREVHARILAAQGGKMSDFLGNGLINMYARCGSMRDARQIFESM 573
Query: 179 KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCG 238
R + + W+A + R G + + ++ M E + + T ++L +C
Sbjct: 574 DRSSRISWSAIMTLCARHGQHDDIIDTYRLMVNEGVVPDGVTLIAILNSCSHAGLTDEAC 633
Query: 239 RQMHANIVKIGLES-DEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
I L DE+ QC +VD+ + L +AE + +I D+ ++ + N ML
Sbjct: 634 HYFTWIISDFELPHLDEHYQC-MVDLLCRAGRLDEAEELISMI-DRPDVVTLNTMLAA 689
>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
Length = 890
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 102/356 (28%), Positives = 159/356 (44%), Gaps = 46/356 (12%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
+ L+ C + + +HI +R ++ ++ N L+ M+ C + AR+ FD M
Sbjct: 283 FVSLLNSCNTPEALNRGRRIHSHISER-GLETDVVVANALITMYCKCNCIQDARETFDRM 341
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITL-----FAEMMKRKKGHMLLVFPAWI-IVCVLKA 126
RD SW+ MI GY + YQ+ +L E M+R+ VFP + + +LKA
Sbjct: 342 SKRDVISWSAMIAGYAQ-SGYQDKESLDEVFQLLERMRREG-----VFPNKVTFMSILKA 395
Query: 127 CVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK---------------------- 164
C +E G+Q+H + K+G + SL ++ N Y K
Sbjct: 396 CSVHGALEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAW 455
Query: 165 -------FRC--LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIK 215
+C L A+ VFS++ N V W I + G +VF M E +
Sbjct: 456 ASLLTMYIKCGDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQ 515
Query: 216 KNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAER 275
+ T S+L+ACG + G+ +HA VK+GLESD V L+ MY KC + +A
Sbjct: 516 PDRVTIISILEACGALSALER-GKLVHAEAVKLGLESDTVVATSLIGMYSKCGEVTEART 574
Query: 276 VFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
VF+ I ++ +A WNAML GY ++G+ EA M + E + AC
Sbjct: 575 VFDKISNRDTVA-WNAMLAGYGQHGIGPEAVDLFKRMLKERVPPNEITFTAVISAC 629
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 86/320 (26%), Positives = 146/320 (45%), Gaps = 41/320 (12%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ CG++ A ++F +M R+ SW +I E L+ +M++
Sbjct: 220 LITMYSKCGEISLACEIFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPN 279
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+ F V +L +C + G+++H + + G ++ + +LI Y K C++DA
Sbjct: 280 AVTF-----VSLLNSCNTPEALNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDA 334
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGH-----FHQVFNDFKEMGRERIKKNSYTFSSVLK 226
F ++ + + + W+A I + G+ +VF + M RE + N TF S+LK
Sbjct: 335 RETFDRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILK 394
Query: 227 ACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK--- 283
AC V GRQ+HA I K+G ESD +Q + +MY KC + +AE+VF + +K
Sbjct: 395 ACS-VHGALEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVV 453
Query: 284 ---------------------------KNIASWNAMLVGYIRNGLYVEATKFLYLMKASG 316
+N+ SWN M+ GY ++G + + L MK G
Sbjct: 454 AWASLLTMYIKCGDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEG 513
Query: 317 IQIQESLINDLRIACSSISA 336
Q I + AC ++SA
Sbjct: 514 FQPDRVTIISILEACGALSA 533
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/298 (26%), Positives = 147/298 (49%), Gaps = 14/298 (4%)
Query: 6 LPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVN---IKPTLLFLNRLLLMHVSCGQL 62
L + ++ Y C+I+ C + FE + K+++ + + N L+ + G +
Sbjct: 74 LLVNSNTYGCIIEHCAKLRR----FEDGKMVHKQLDELGLAIDIYLGNSLINFYSKFGDV 129
Query: 63 DTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVC 122
+ Q+F M LRD +W+ MI Y + F M + F +
Sbjct: 130 ASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIEPNRITF-----LS 184
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
+LKAC +E +++H ++ G ++++ +LI Y K + A +F ++K N
Sbjct: 185 ILKACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKCGEISLACEIFQKMKERN 244
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
V WTA I N + ++ F +++M + I N+ TF S+L +C + N GR++H
Sbjct: 245 VVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSC-NTPEALNRGRRIH 303
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
++I + GLE+D V L+ MY KC ++DA F+ + K+++ SW+AM+ GY ++G
Sbjct: 304 SHISERGLETDVVVANALITMYCKCNCIQDARETFDRM-SKRDVISWSAMIAGYAQSG 360
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 75/251 (29%), Positives = 126/251 (50%), Gaps = 23/251 (9%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL M++ CG L +A ++F EM R+ SW +MI GY D + L + M + +G
Sbjct: 458 LLTMYIKCGDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSM--KVEGFQ 515
Query: 112 LLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
P + I+ +L+AC +E GK VH KLG + + SLI Y K + +
Sbjct: 516 ----PDRVTIISILEACGALSALERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGEVTE 571
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG- 229
A VF ++ +TV W A + + G + + FK M +ER+ N TF++V+ ACG
Sbjct: 572 ARTVFDKISNRDTVAWNAMLAGYGQHGIGPEAVDLFKRMLKERVPPNEITFTAVISACGR 631
Query: 230 -GVDDDGNCGRQMHANIVKIGLESDEYVQCG------LVDMYGKCRLLRDAERVFELIVD 282
G+ +G I +I ++ D ++ G +VD+ G+ L++AE + +
Sbjct: 632 AGLVQEGR-------EIFRI-MQEDFRMKPGKQHYGCMVDLLGRAGRLQEAEEFIQRMPC 683
Query: 283 KKNIASWNAML 293
+ +I+ W+A+L
Sbjct: 684 EPDISVWHALL 694
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 103/215 (47%), Gaps = 2/215 (0%)
Query: 122 CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH 181
C+++ C E GK VH L +LG + +I L SLINFY KF + + VF ++
Sbjct: 83 CIIEHCAKLRRFEDGKMVHKQLDELGLAIDIYLGNSLINFYSKFGDVASVEQVFRRMTLR 142
Query: 182 NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQM 241
+ V W++ I H + F+ F+ M I+ N TF S+LKAC R++
Sbjct: 143 DVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIEPNRITFLSILKACNNYSMLEK-AREI 201
Query: 242 HANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGL 301
H + G+E+D V L+ MY KC + A +F+ + ++N+ SW A++ ++
Sbjct: 202 HTVVKASGMETDVAVATALITMYSKCGEISLACEIFQKM-KERNVVSWTAIIQANAQHRK 260
Query: 302 YVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
EA + M +GI L +C++ A
Sbjct: 261 LNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEA 295
>gi|357148978|ref|XP_003574958.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Brachypodium distachyon]
Length = 598
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 94/287 (32%), Positives = 137/287 (47%), Gaps = 7/287 (2%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L LN +L M V GQL A LFD M + +W+ M+ G++ DY + LF M
Sbjct: 182 LPVLNSVLTMLVRAGQLYDACLLFDSMHEKSVVTWSAMVSGFLQTGDYMKVFGLFNHM-- 239
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
+ G+ F + +V ++ A V N+ + K VH LL K G L SL+N Y K
Sbjct: 240 QTAGYK---FDSVALVNLISAAVLLGNLLVAKGVHALLIKSGFESEQDLMSSLVNLYAKC 296
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
LE A VF + R N V+WT+ I GH + F M ++ N T SSVL
Sbjct: 297 GDLEAAQEVFDAVHRKNVVLWTSMISGYAEGGHPDKALKMFDSMLCTDVEPNEATVSSVL 356
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE-LIVDKK 284
AC + N +++ ++V IGL+ D V GL+D Y KC + A +F+ + +
Sbjct: 357 SACANL-GSANQAKKVEDHVVAIGLQKDLRVATGLIDTYCKCGNVTLAREIFDGVTTTNR 415
Query: 285 NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
++A W+AM+ GY G EA M+ G+Q + L AC
Sbjct: 416 DLAIWSAMINGYACIGEGSEALVLFNEMQNQGVQPDAIVFTHLLTAC 462
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 80/302 (26%), Positives = 142/302 (47%), Gaps = 14/302 (4%)
Query: 40 VNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITL 99
V + L LL M+ C L AR+LFDEMP SW M+ Y + E + +
Sbjct: 74 VGAASDVFVLTSLLDMYAKCACLPDARRLFDEMPSPTLISWNCMVTAYSKSSCVTEAVAM 133
Query: 100 FAEMMKRKKGHMLLVFPAW-IIVCVLKACVCTMNME-LGKQVHGLLFKLGSSRNISLTGS 157
F M R G V P+ +V +L V +++ G ++G K G ++ + S
Sbjct: 134 FNTM--RGVG----VRPSGATLVGLLSGRVDSLSTRNPGLCLYGYSMKSGLDTDLPVLNS 187
Query: 158 LINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKN 217
++ + L DA +F + + V W+A + + G + +VF F M K +
Sbjct: 188 VLTMLVRAGQLYDACLLFDSMHEKSVVTWSAMVSGFLQTGDYMKVFGLFNHMQTAGYKFD 247
Query: 218 SYTFSSVLKACGGVDDDGN--CGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAER 275
S +++ A + GN + +HA ++K G ES++ + LV++Y KC L A+
Sbjct: 248 SVALVNLISAAVLL---GNLLVAKGVHALLIKSGFESEQDLMSSLVNLYAKCGDLEAAQE 304
Query: 276 VFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
VF+ V +KN+ W +M+ GY G +A K M + ++ E+ ++ + AC+++
Sbjct: 305 VFD-AVHRKNVVLWTSMISGYAEGGHPDKALKMFDSMLCTDVEPNEATVSSVLSACANLG 363
Query: 336 AS 337
++
Sbjct: 364 SA 365
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 55/261 (21%), Positives = 110/261 (42%), Gaps = 11/261 (4%)
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN 132
P W +I Y C+ + ++ FP+ + K+C
Sbjct: 6 PTSTLRHWNRLIQLAAASGSYSRCLRHYVPLLAAGLHGDASTFPS-----LAKSCAALRL 60
Query: 133 MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192
LG VH +G++ ++ + SL++ Y K CL DA +F ++ + W +
Sbjct: 61 PRLGCSVHAHALLVGAASDVFVLTSLLDMYAKCACLPDARRLFDEMPSPTLISWNCMVTA 120
Query: 193 NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVD--DDGNCGRQMHANIVKIGL 250
+ + F M ++ + T +L G VD N G ++ +K GL
Sbjct: 121 YSKSSCVTEAVAMFNTMRGVGVRPSGATLVGLLS--GRVDSLSTRNPGLCLYGYSMKSGL 178
Query: 251 ESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLY 310
++D V ++ M + L DA +F+ + +K++ +W+AM+ G+++ G Y++
Sbjct: 179 DTDLPVLNSVLTMLVRAGQLYDACLLFDSM-HEKSVVTWSAMVSGFLQTGDYMKVFGLFN 237
Query: 311 LMKASGIQIQE-SLINDLRIA 330
M+ +G + +L+N + A
Sbjct: 238 HMQTAGYKFDSVALVNLISAA 258
Score = 40.8 bits (94), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 40 VNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL--RDFNSWAVMIVGYVDVADYQECI 97
+ ++ L L+ + CG + AR++FD + RD W+ MI GY + + E +
Sbjct: 378 IGLQKDLRVATGLIDTYCKCGNVTLAREIFDGVTTTNRDLAIWSAMINGYACIGEGSEAL 437
Query: 98 TLFAEMMKRKKGHMLLVFPAWIIVC 122
LF EM + +VF + C
Sbjct: 438 VLFNEMQNQGVQPDAIVFTHLLTAC 462
>gi|297811443|ref|XP_002873605.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319442|gb|EFH49864.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 750
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 99/338 (29%), Positives = 165/338 (48%), Gaps = 13/338 (3%)
Query: 1 MDNLCLPITTDMYTCLIKEC-TFQKDSAGAFELLNHIRKRVNIK-PTLLFLNRLLLMHVS 58
MD + ++ Y CL + C + S G L H R R+ I+ P++L N +L M+
Sbjct: 72 MDKAGVSVSLYSYQCLFEACRELRSLSHGR---LLHNRMRMGIENPSVLLQNCVLQMYCE 128
Query: 59 CGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAW 118
CG L+ A +LFDEM + S MI Y + + + LF+ M++ P+
Sbjct: 129 CGSLEDADKLFDEMSDLNAVSRTTMISAYAEQGLLDKAVGLFSRMLESGDKP-----PSS 183
Query: 119 IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL 178
+ +LK+ V +++G+Q+H + + G N S+ ++N Y K L A VF Q+
Sbjct: 184 MYTTLLKSLVNPRALDIGRQIHAHVIRAGLCSNASIETGIVNMYVKCGWLVGAKRVFDQM 243
Query: 179 KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCG 238
V WT +V + G F ++ E ++ +S+ FS VLKAC + ++ G
Sbjct: 244 AVKKPVAWTGLMVGYTQAGRARDALKLFVDLITEGVEWDSFVFSVVLKACASL-EELRFG 302
Query: 239 RQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIR 298
+Q+HA + K+GLE + V LVD Y KC A R F+ I + ++ SW+A++ GY +
Sbjct: 303 KQIHACVAKLGLECEVSVGTPLVDFYIKCSSFESACRAFQEIREPNDV-SWSAIISGYCQ 361
Query: 299 NGLYVEATK-FLYLMKASGIQIQESLINDLRIACSSIS 335
+ EA K F L + + + + ACS ++
Sbjct: 362 MSQFEEAVKTFKSLRSKNAVVLNSFTYTSIFQACSVLA 399
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 113/249 (45%), Gaps = 14/249 (5%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ ++ C ++A + F E+ + SW+ +I GY ++ ++E + F + +
Sbjct: 324 LVDFYIKCSSFESACRAFQEIREPNDVSWSAIISGYCQMSQFEEAVKTFKSLRSKNA--- 380
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFK---LGSSRNISLTGSLINFYGKFRCL 168
+V ++ + +AC + +G QVH K +GS S +LI Y K CL
Sbjct: 381 -VVLNSFTYTSIFQACSVLADCNIGGQVHADAIKRSLIGSQYGES---ALITMYSKCGCL 436
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+DA VF + + V WTA I + G+ + F++M +K NS TF +VL AC
Sbjct: 437 DDAHEVFESMDNPDIVAWTAFISGHAYYGNASEALRLFEKMVSCGMKPNSVTFIAVLTAC 496
Query: 229 --GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
G+ + G + D Y C ++D+Y + LL +A R + + + +
Sbjct: 497 SHAGLVEQGKHYLDTMLRKYNVAPTIDHY-DC-MIDIYARSGLLDEALRFMKNMPFEPDA 554
Query: 287 ASWNAMLVG 295
SW L G
Sbjct: 555 MSWKCFLSG 563
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 70/139 (50%), Gaps = 4/139 (2%)
Query: 190 IVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIG 249
+V+ + G ++ F F+EM + + + Y++ + +AC + + GR +H N +++G
Sbjct: 53 LVSLSKHGKLNEAFEFFQEMDKAGVSVSLYSYQCLFEACRELRSLSH-GRLLH-NRMRMG 110
Query: 250 LESDE-YVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKF 308
+E+ +Q ++ MY +C L DA+++F+ + D N S M+ Y GL +A
Sbjct: 111 IENPSVLLQNCVLQMYCECGSLEDADKLFDEMSD-LNAVSRTTMISAYAEQGLLDKAVGL 169
Query: 309 LYLMKASGIQIQESLINDL 327
M SG + S+ L
Sbjct: 170 FSRMLESGDKPPSSMYTTL 188
>gi|334184678|ref|NP_180987.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546770|sp|O64705.2|PP184_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g34400
gi|330253874|gb|AEC08968.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 621
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 91/260 (35%), Positives = 139/260 (53%), Gaps = 15/260 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+ L++M+ CGQ+ AR+LFDE+ RD SW MI GY + ++ + LF +M +
Sbjct: 171 HSLIMMYAKCGQVGYARKLFDEITERDTVSWNSMISGYSEAGYAKDAMDLFRKMEEEG-- 228
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLT---GS-LINFYGKF 165
+V +L AC ++ G+ LL ++ ++ I L+ GS LI+ YGK
Sbjct: 229 ---FEPDERTLVSMLGACSHLGDLRTGR----LLEEMAITKKIGLSTFLGSKLISMYGKC 281
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
L+ A VF+Q+ + + V WTA I + G + F F EM + + ++ T S+VL
Sbjct: 282 GDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVL 341
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
ACG V G+Q+ + ++ L+ + YV GLVDMYGKC + +A RVFE + KN
Sbjct: 342 SACGSVGAL-ELGKQIETHASELSLQHNIYVATGLVDMYGKCGRVEEALRVFEAM-PVKN 399
Query: 286 IASWNAMLVGYIRNGLYVEA 305
A+WNAM+ Y G EA
Sbjct: 400 EATWNAMITAYAHQGHAKEA 419
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 81/290 (27%), Positives = 133/290 (45%), Gaps = 12/290 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDV-ADYQECITLFAEMMKRKK 108
N L+ V G + + LF + S+ MI G + D++ ++L+ R+
Sbjct: 69 NFLIPKAVELGDFNYSSFLFSVTEEPNHYSFNYMIRGLTNTWNDHEAALSLY-----RRM 123
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
L + V AC + +G+ VH LFK+G R++ + SLI Y K +
Sbjct: 124 KFSGLKPDKFTYNFVFIACAKLEEIGVGRSVHSSLFKVGLERDVHINHSLIMMYAKCGQV 183
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
A +F ++ +TV W + I G+ + F++M E + + T S+L AC
Sbjct: 184 GYARKLFDEITERDTVSWNSMISGYSEAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGAC 243
Query: 229 GGVDD--DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
+ D G +M A KIGL + ++ L+ MYGKC L A RVF ++ K +
Sbjct: 244 SHLGDLRTGRLLEEM-AITKKIGLST--FLGSKLISMYGKCGDLDSARRVFNQMIKKDRV 300
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
A W AM+ Y +NG EA K + M+ +G+ ++ + AC S+ A
Sbjct: 301 A-WTAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGA 349
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 70/239 (29%), Positives = 103/239 (43%), Gaps = 14/239 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
++L+ M+ CG LD+AR++F++M +D +W MI Y E LF EM K
Sbjct: 272 SKLISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEMEKTG-- 329
Query: 110 HMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
V P A + VL AC +ELGKQ+ +L NI + L++ YGK +
Sbjct: 330 ----VSPDAGTLSTVLSACGSVGALELGKQIETHASELSLQHNIYVATGLVDMYGKCGRV 385
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
E+A VF + N W A I +GH + F M + + TF VL AC
Sbjct: 386 EEALRVFEAMPVKNEATWNAMITAYAHQGHAKEALLLFDRMS---VPPSDITFIGVLSAC 442
Query: 229 --GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
G+ G C R H GL ++D+ + +L +A E K +
Sbjct: 443 VHAGLVHQG-C-RYFHEMSSMFGLVPKIEHYTNIIDLLSRAGMLDEAWEFMERFPGKPD 499
>gi|224119336|ref|XP_002331286.1| predicted protein [Populus trichocarpa]
gi|222873711|gb|EEF10842.1| predicted protein [Populus trichocarpa]
Length = 897
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 87/285 (30%), Positives = 148/285 (51%), Gaps = 7/285 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N ++ + SCG++D AR+ F EMP RD SW +I G++ + ++ I +F EM G
Sbjct: 119 NSIISGYASCGEMDIARKFFYEMPERDVVSWNSVISGFLQNGECRKSIDVFLEM-----G 173
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ F + VLKAC ++G QVHGL+ K G ++ +L+ Y K + L+
Sbjct: 174 RCGVGFDRASLAVVLKACGALEECDMGVQVHGLVVKFGFDCDVVTGSALLGMYAKCKRLD 233
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
D+ VFS+L N V W+A I + + FKEM + + ++S+ ++C
Sbjct: 234 DSLSVFSELPEKNWVSWSAMIAGCVQNDRNVEGLELFKEMQGVGVGVSQSIYASLFRSCA 293
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ G+++H++ +K SD V +DMY KC + DA++V + K ++ S+
Sbjct: 294 ALSAL-RLGKELHSHALKSAFGSDIIVGTATLDMYAKCGRMADAQKVLSSM-PKCSLQSY 351
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
NA++VGY R+ +A K L+ +G+ E ++ AC+SI
Sbjct: 352 NAIIVGYARSDRGFQALKSFQLLLKTGLGFDEITLSGALNACASI 396
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 87/317 (27%), Positives = 148/317 (46%), Gaps = 8/317 (2%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCG 60
M + + ++ +Y L + C EL +H K ++ L M+ CG
Sbjct: 273 MQGVGVGVSQSIYASLFRSCAALSALRLGKELHSHALKSA-FGSDIIVGTATLDMYAKCG 331
Query: 61 QLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWII 120
++ A+++ MP S+ +IVGY + + F ++K G F +
Sbjct: 332 RMADAQKVLSSMPKCSLQSYNAIIVGYARSDRGFQALKSFQLLLKTGLG-----FDEITL 386
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
L AC G+QVHGL K S NI + ++++ YGK + L +A +F ++R
Sbjct: 387 SGALNACASIRGDLEGRQVHGLAVKSISMSNICVANAILDMYGKCKALAEASDLFDMMER 446
Query: 181 HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQ 240
+ V W A I + G+ + F M R++ + +T+ SVLKAC G N G +
Sbjct: 447 RDAVSWNAIIAACEQNGNEEETLAHFASMIHSRMEPDDFTYGSVLKACAG-RQALNTGME 505
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
+H I+K G+ D +V LVDMY KC ++ A+++ + ++K + SWNA++ G+
Sbjct: 506 IHTRIIKSGMGFDSFVGAALVDMYCKCGMIEKADKIHDR-TEQKTMVSWNAIISGFSLLQ 564
Query: 301 LYVEATKFLYLMKASGI 317
+A KF M G+
Sbjct: 565 QSEDAHKFFSRMLEMGV 581
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/288 (29%), Positives = 139/288 (48%), Gaps = 13/288 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N +L M+ C L A LFD M RD SW +I + +E + FA M+
Sbjct: 422 NAILDMYGKCKALAEASDLFDMMERRDAVSWNAIIAACEQNGNEEETLAHFASMI----- 476
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
H + + VLKAC + G ++H + K G + + +L++ Y K +E
Sbjct: 477 HSRMEPDDFTYGSVLKACAGRQALNTGMEIHTRIIKSGMGFDSFVGAALVDMYCKCGMIE 536
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNC---REGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
AD + + ++ V W A I + H+ F+ EMG + +++T+++VL
Sbjct: 537 KADKIHDRTEQKTMVSWNAIISGFSLLQQSEDAHKFFSRMLEMG---VNPDNFTYAAVLD 593
Query: 227 ACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
C + G G+Q+HA I+K L+SD Y+ LVDMY KC ++D++ +FE ++
Sbjct: 594 TCANLATVG-LGKQIHAQIIKQELQSDVYICSTLVDMYSKCGNMQDSQLMFEK-APNRDF 651
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
+WNAML GY +GL EA K M+ ++ + + AC+ +
Sbjct: 652 VTWNAMLCGYAHHGLGEEALKLFESMQLVNVKPNHATFVSVLRACAHM 699
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 130/285 (45%), Gaps = 7/285 (2%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL M+ C +LD + +F E+P +++ SW+ MI G V E + LF EM G
Sbjct: 222 LLGMYAKCKRLDDSLSVFSELPEKNWVSWSAMIAGCVQNDRNVEGLELFKEMQGVGVG-- 279
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
I + ++C + LGK++H K +I + + ++ Y K + DA
Sbjct: 280 ---VSQSIYASLFRSCAALSALRLGKELHSHALKSAFGSDIIVGTATLDMYAKCGRMADA 336
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
V S + + + + A IV R Q F+ + + + + T S L AC +
Sbjct: 337 QKVLSSMPKCSLQSYNAIIVGYARSDRGFQALKSFQLLLKTGLGFDEITLSGALNACASI 396
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
D GRQ+H VK S+ V ++DMYGKC+ L +A +F+++ ++++ SWNA
Sbjct: 397 RGDLE-GRQVHGLAVKSISMSNICVANAILDMYGKCKALAEASDLFDMM-ERRDAVSWNA 454
Query: 292 MLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
++ +NG E M S ++ + + AC+ A
Sbjct: 455 IIAACEQNGNEEETLAHFASMIHSRMEPDDFTYGSVLKACAGRQA 499
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 121/249 (48%), Gaps = 4/249 (1%)
Query: 93 YQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNME-LGKQVHGLLFKLGSSRN 151
YQEC + + K+ H ++F + + C+ M ++ L +F R+
Sbjct: 56 YQEC-SKQNSLNPGKQAHARMIFCGFEPTTFVSNCLMQMYIKCLYLDYACKVFDKMYLRD 114
Query: 152 ISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGR 211
+ S+I+ Y ++ A F ++ + V W + I + G + + F EMGR
Sbjct: 115 VVSYNSIISGYASCGEMDIARKFFYEMPERDVVSWNSVISGFLQNGECRKSIDVFLEMGR 174
Query: 212 ERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLR 271
+ + + + VLKACG +++ + G Q+H +VK G + D L+ MY KC+ L
Sbjct: 175 CGVGFDRASLAVVLKACGALEE-CDMGVQVHGLVVKFGFDCDVVTGSALLGMYAKCKRLD 233
Query: 272 DAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
D+ VF + +K N SW+AM+ G ++N VE + M+ G+ + +S+ L +C
Sbjct: 234 DSLSVFSELPEK-NWVSWSAMIAGCVQNDRNVEGLELFKEMQGVGVGVSQSIYASLFRSC 292
Query: 332 SSISASKIN 340
+++SA ++
Sbjct: 293 AALSALRLG 301
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/245 (22%), Positives = 107/245 (43%), Gaps = 11/245 (4%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ CG ++ A ++ D + SW +I G+ + ++ F+ M++
Sbjct: 525 LVDMYCKCGMIEKADKIHDRTEQKTMVSWNAIISGFSLLQQSEDAHKFFSRMLEMGVNPD 584
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+ A VL C + LGKQ+H + K ++ + +L++ Y K ++D+
Sbjct: 585 NFTYAA-----VLDTCANLATVGLGKQIHAQIIKQELQSDVYICSTLVDMYSKCGNMQDS 639
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG-- 229
+F + + V W A + G + F+ M +K N TF SVL+AC
Sbjct: 640 QLMFEKAPNRDFVTWNAMLCGYAHHGLGEEALKLFESMQLVNVKPNHATFVSVLRACAHM 699
Query: 230 GVDDDGNCGRQMHANIVKIGLES-DEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
G+ D G + + GL+ E+ C +VD+ G+ + +A + + + + +
Sbjct: 700 GLVDKGL--HYFDVMLSEYGLDPQSEHYSC-MVDILGRSGRIDEALNLVQKMPFEADAVI 756
Query: 289 WNAML 293
W +L
Sbjct: 757 WRNLL 761
>gi|3128231|gb|AAC26711.1| hypothetical protein [Arabidopsis thaliana]
gi|20197159|gb|AAM14947.1| hypothetical protein [Arabidopsis thaliana]
Length = 617
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 91/260 (35%), Positives = 139/260 (53%), Gaps = 15/260 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+ L++M+ CGQ+ AR+LFDE+ RD SW MI GY + ++ + LF +M +
Sbjct: 167 HSLIMMYAKCGQVGYARKLFDEITERDTVSWNSMISGYSEAGYAKDAMDLFRKMEEEG-- 224
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLT---GS-LINFYGKF 165
+V +L AC ++ G+ LL ++ ++ I L+ GS LI+ YGK
Sbjct: 225 ---FEPDERTLVSMLGACSHLGDLRTGR----LLEEMAITKKIGLSTFLGSKLISMYGKC 277
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
L+ A VF+Q+ + + V WTA I + G + F F EM + + ++ T S+VL
Sbjct: 278 GDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVL 337
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
ACG V G+Q+ + ++ L+ + YV GLVDMYGKC + +A RVFE + KN
Sbjct: 338 SACGSVGAL-ELGKQIETHASELSLQHNIYVATGLVDMYGKCGRVEEALRVFEAM-PVKN 395
Query: 286 IASWNAMLVGYIRNGLYVEA 305
A+WNAM+ Y G EA
Sbjct: 396 EATWNAMITAYAHQGHAKEA 415
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 81/290 (27%), Positives = 133/290 (45%), Gaps = 12/290 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDV-ADYQECITLFAEMMKRKK 108
N L+ V G + + LF + S+ MI G + D++ ++L+ R+
Sbjct: 65 NFLIPKAVELGDFNYSSFLFSVTEEPNHYSFNYMIRGLTNTWNDHEAALSLY-----RRM 119
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
L + V AC + +G+ VH LFK+G R++ + SLI Y K +
Sbjct: 120 KFSGLKPDKFTYNFVFIACAKLEEIGVGRSVHSSLFKVGLERDVHINHSLIMMYAKCGQV 179
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
A +F ++ +TV W + I G+ + F++M E + + T S+L AC
Sbjct: 180 GYARKLFDEITERDTVSWNSMISGYSEAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGAC 239
Query: 229 GGVDD--DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
+ D G +M A KIGL + ++ L+ MYGKC L A RVF ++ K +
Sbjct: 240 SHLGDLRTGRLLEEM-AITKKIGLST--FLGSKLISMYGKCGDLDSARRVFNQMIKKDRV 296
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
A W AM+ Y +NG EA K + M+ +G+ ++ + AC S+ A
Sbjct: 297 A-WTAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGA 345
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 70/239 (29%), Positives = 103/239 (43%), Gaps = 14/239 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
++L+ M+ CG LD+AR++F++M +D +W MI Y E LF EM K
Sbjct: 268 SKLISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEMEKTG-- 325
Query: 110 HMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
V P A + VL AC +ELGKQ+ +L NI + L++ YGK +
Sbjct: 326 ----VSPDAGTLSTVLSACGSVGALELGKQIETHASELSLQHNIYVATGLVDMYGKCGRV 381
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
E+A VF + N W A I +GH + F M + + TF VL AC
Sbjct: 382 EEALRVFEAMPVKNEATWNAMITAYAHQGHAKEALLLFDRMS---VPPSDITFIGVLSAC 438
Query: 229 --GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
G+ G C R H GL ++D+ + +L +A E K +
Sbjct: 439 VHAGLVHQG-C-RYFHEMSSMFGLVPKIEHYTNIIDLLSRAGMLDEAWEFMERFPGKPD 495
>gi|296081839|emb|CBI20844.3| unnamed protein product [Vitis vinifera]
Length = 700
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 100/320 (31%), Positives = 148/320 (46%), Gaps = 4/320 (1%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
Y+ I C + A L I K+ L + L+ M+ ++ AR LFD+M
Sbjct: 44 YSATISACAQSTRPSLATSLHCLILKK-GFSNQLFVSSGLISMYSKHDRIKEARFLFDDM 102
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN 132
P RD SW MI GY +E LF M+ + LLV + + VLKAC
Sbjct: 103 PERDDVSWNSMIAGYSQRGLNEEACGLFCSMINSCENWKLLV-SDFTLATVLKACGGLGC 161
Query: 133 MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192
+GK VHG K+G ++ ++GS + Y K L+ A F Q++ + V W I
Sbjct: 162 SRIGKCVHGYAVKIGFDSDLFVSGSTVYMYCKCGILDMAGLAFDQIENKDIVAWNTMITG 221
Query: 193 NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLES 252
+ + + F +M E K N TF VLKA + D GR HA ++K+G
Sbjct: 222 YAQNCYEEEAIELFYQMELEGFKPNDTTFCCVLKASTAMSDSA-VGRCFHAKVLKLGCSM 280
Query: 253 DEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLM 312
D +V LVDMY K + D ER F + K+N+ S+NA++ GY G Y EA + +
Sbjct: 281 DVFVATALVDMYSKFYDIEDVERAFGEM-SKRNLVSFNALITGYSLMGKYEEALRVYSQL 339
Query: 313 KASGIQIQESLINDLRIACS 332
++ G++ L +CS
Sbjct: 340 QSEGMEPDSFTFVGLFSSCS 359
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 87/323 (26%), Positives = 153/323 (47%), Gaps = 14/323 (4%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
+ C++K T DSA + K + + L+ M+ ++ + F EM
Sbjct: 250 FCCVLKASTAMSDSAVGRCFHAKVLK-LGCSMDVFVATALVDMYSKFYDIEDVERAFGEM 308
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN 132
R+ S+ +I GY + Y+E + +++++ + ++ V + +C +
Sbjct: 309 SKRNLVSFNALITGYSLMGKYEEALRVYSQLQSEG-----MEPDSFTFVGLFSSCSVSST 363
Query: 133 MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192
+ G QVH K G ++S+ S++NFY K + A F + R N+V W I
Sbjct: 364 VAEGAQVHVHSVKFGLDSDVSVGNSIVNFYSKCGFTDSALEAFESINRPNSVCWAGIISG 423
Query: 193 NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC---GGVDDDGNCGRQMHANIVKIG 249
+ G + F +M + K + ++ SSV+KA V+ GR +HA+++K G
Sbjct: 424 FAQNGEGEKALMQFCKMRKFIDKTDEFSSSSVIKAVSSWAAVEQ----GRHLHAHVMKSG 479
Query: 250 LESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFL 309
L+ YV ++DMY KC ++ DA++VF ++ +KN+ SWN+M+ GY +NG EA
Sbjct: 480 LDCTIYVGSAVIDMYSKCGMVEDAQKVFS-VMPEKNVVSWNSMITGYAQNGFCKEALLLF 538
Query: 310 YLMKASGIQIQESLINDLRIACS 332
M +SGI + ACS
Sbjct: 539 QEMTSSGILPTAVTFVGILFACS 561
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/262 (27%), Positives = 121/262 (46%), Gaps = 7/262 (2%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
++ L + M+ CG LD A FD++ +D +W MI GY +E I
Sbjct: 174 KIGFDSDLFVSGSTVYMYCKCGILDMAGLAFDQIENKDIVAWNTMITGYAQNCYEEEAIE 233
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
LF +M F CVLKA + +G+ H + KLG S ++ + +L
Sbjct: 234 LFYQMELEGFKPNDTTF-----CCVLKASTAMSDSAVGRCFHAKVLKLGCSMDVFVATAL 288
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
++ Y KF +ED + F ++ + N V + A I G + + + ++ E ++ +S
Sbjct: 289 VDMYSKFYDIEDVERAFGEMSKRNLVSFNALITGYSLMGKYEEALRVYSQLQSEGMEPDS 348
Query: 219 YTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE 278
+TF + +C V G Q+H + VK GL+SD V +V+ Y KC A FE
Sbjct: 349 FTFVGLFSSC-SVSSTVAEGAQVHVHSVKFGLDSDVSVGNSIVNFYSKCGFTDSALEAFE 407
Query: 279 LIVDKKNIASWNAMLVGYIRNG 300
I ++ N W ++ G+ +NG
Sbjct: 408 SI-NRPNSVCWAGIISGFAQNG 428
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 108/222 (48%), Gaps = 6/222 (2%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
+ AC + L +H L+ K G S + ++ LI+ Y K +++A F+F + +
Sbjct: 47 TISACAQSTRPSLATSLHCLILKKGFSNQLFVSSGLISMYSKHDRIKEARFLFDDMPERD 106
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRE----RIKKNSYTFSSVLKACGGVDDDGNCG 238
V W + I + G + F M ++ + +T ++VLKACGG+ G
Sbjct: 107 DVSWNSMIAGYSQRGLNEEACGLFCSMINSCENWKLLVSDFTLATVLKACGGLGCS-RIG 165
Query: 239 RQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIR 298
+ +H VKIG +SD +V V MY KC +L A F+ I + K+I +WN M+ GY +
Sbjct: 166 KCVHGYAVKIGFDSDLFVSGSTVYMYCKCGILDMAGLAFDQI-ENKDIVAWNTMITGYAQ 224
Query: 299 NGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKIN 340
N EA + Y M+ G + ++ + A +++S S +
Sbjct: 225 NCYEEEAIELFYQMELEGFKPNDTTFCCVLKASTAMSDSAVG 266
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 69/124 (55%), Gaps = 2/124 (1%)
Query: 182 NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQM 241
N V WT+KI +N R G Q + F +M R I+ N+ T+S+ + AC + +
Sbjct: 5 NVVRWTSKITDNARRGLVDQALSCFLQMLRAGIEPNAITYSATISAC-AQSTRPSLATSL 63
Query: 242 HANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGL 301
H I+K G + +V GL+ MY K +++A +F+ + ++ ++ SWN+M+ GY + GL
Sbjct: 64 HCLILKKGFSNQLFVSSGLISMYSKHDRIKEARFLFDDMPERDDV-SWNSMIAGYSQRGL 122
Query: 302 YVEA 305
EA
Sbjct: 123 NEEA 126
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/246 (24%), Positives = 106/246 (43%), Gaps = 9/246 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N ++ + CG D+A + F+ + + WA +I G+ + ++ + F +M K
Sbjct: 387 NSIVNFYSKCGFTDSALEAFESINRPNSVCWAGIISGFAQNGEGEKALMQFCKMRK---- 442
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ + V+KA +E G+ +H + K G I + ++I+ Y K +E
Sbjct: 443 -FIDKTDEFSSSSVIKAVSSWAAVEQGRHLHAHVMKSGLDCTIYVGSAVIDMYSKCGMVE 501
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC- 228
DA VFS + N V W + I + G + F+EM I + TF +L AC
Sbjct: 502 DAQKVFSVMPEKNVVSWNSMITGYAQNGFCKEALLLFQEMTSSGILPTAVTFVGILFACS 561
Query: 229 -GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
G+ ++G + + I S E+ C +VD+ G+ L +AE K
Sbjct: 562 HAGLVEEGRNFYNLMVHNYGIP-PSMEHCTC-MVDLLGRAGYLEEAEAFLLSSSFSKEPG 619
Query: 288 SWNAML 293
W ++L
Sbjct: 620 IWGSLL 625
>gi|125554337|gb|EAY99942.1| hypothetical protein OsI_21945 [Oryza sativa Indica Group]
Length = 465
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 89/275 (32%), Positives = 141/275 (51%), Gaps = 9/275 (3%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
+N L+ M+ G L+ AR++FD +P R+ SW M+ G + +E + LF EM K
Sbjct: 163 MNSLVDMYAKSGDLENARKVFDRVPERNVVSWTSMLSGSIQNGFAEEGLVLFNEMRKDN- 221
Query: 109 GHMLLVFPA-WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
V P+ + +V VL AC + G+ +HG + K G S N ++ SL++ Y K
Sbjct: 222 -----VHPSEYTMVSVLAACAMLGCLHQGRWIHGSVIKDGLSTNSFISASLLDMYAKCEK 276
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
LEDA VF +L+ + V+WTA IV + F I NS T ++V+ A
Sbjct: 277 LEDARRVFDELEFVDIVLWTAMIVGYTQNKSPLDALQLFLHKKFVSIVPNSVTIATVISA 336
Query: 228 CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
+ GR +HA VK+G + V+ LVDMY KC+ L +A +F I+ K++
Sbjct: 337 SAQLHHL-PLGRSIHAIGVKLGTMESDVVRNALVDMYAKCQALPEANSIFGRIL-IKDVV 394
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQES 322
+WN+M+ GY NG+ E+ M+ G+ +++
Sbjct: 395 AWNSMMAGYSENGMANESLVLFNRMRMQGLPKKQN 429
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 58/112 (51%), Gaps = 3/112 (2%)
Query: 221 FSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELI 280
S LKAC D GR++H ++VK G +D +V LVDMY K L +A +VF+
Sbjct: 129 LSLALKACVR-SADFRYGRRLHCDVVKAG-GADGFVMNSLVDMYAKSGDLENARKVFDR- 185
Query: 281 VDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
V ++N+ SW +ML G I+NG E M+ + E + + AC+
Sbjct: 186 VPERNVVSWTSMLSGSIQNGFAEEGLVLFNEMRKDNVHPSEYTMVSVLAACA 237
>gi|224094835|ref|XP_002310258.1| predicted protein [Populus trichocarpa]
gi|222853161|gb|EEE90708.1| predicted protein [Populus trichocarpa]
Length = 666
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 82/283 (28%), Positives = 136/283 (48%), Gaps = 7/283 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L M+ CG+LD +LF+ M RD SW +I+ V + + + F M +
Sbjct: 208 NTLATMYNKCGKLDYGLRLFESMTQRDVVSWTTIIMSNVQIGQEENAVKAFRRMRETDVS 267
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
F A V+ C +E G+Q+H + + G ++S+ S++ Y K L+
Sbjct: 268 PNEFTFAA-----VISGCATLGRIEWGEQLHAHVIRRGLVDSLSVANSIMAMYSKCWQLD 322
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A VF L R + + W+ I + G + F+ M RE + N + F+SVL CG
Sbjct: 323 LASTVFQGLSRRDIISWSTMISGYAQGGCGEEAFDYLSWMRREGPRPNEFAFASVLSVCG 382
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ G+Q+HA+++ +GLE + VQ L++MY KC +++A ++F+ + NI SW
Sbjct: 383 NMAILEQ-GKQLHAHVLCVGLEQNTMVQSALINMYSKCGSIKEASKIFDE-AEYNNIVSW 440
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
AM+ GY +G EA + G++ + ACS
Sbjct: 441 TAMINGYAEHGYSQEAIDLFKKLPKVGLRPDSVTFIAVLAACS 483
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 86/288 (29%), Positives = 145/288 (50%), Gaps = 10/288 (3%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
+N +L V G L+ ARQLFD+M RD SW +I GYV+ + E ++LF++M
Sbjct: 4 INLVLKNLVKTGHLNNARQLFDKMLQRDEISWTTIISGYVNGMNTTEALSLFSKMWVEPG 63
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
HM +I+ LKAC M++ G+ +HG K ++ + +L++ Y K +
Sbjct: 64 LHM----DPFILSLALKACGLNMSVSFGESLHGYSVKTDFVNSVFVGSALVDMYMKIGKV 119
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
++ VF ++ N V WTA I R G+ + F +M +++ ++YTFSS LKAC
Sbjct: 120 DEGCIVFKEMPLRNVVSWTAIIAGLVRAGYNKEALAYFSDMWIQKVGCDTYTFSSALKAC 179
Query: 229 GGVDDDG--NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
D G N GR++H +K G + +V L MY KC L R+FE + ++++
Sbjct: 180 A---DSGALNYGREIHCQTLKKGFTAVSFVANTLATMYNKCGKLDYGLRLFESMT-QRDV 235
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
SW +++ ++ G A K M+ + + E + C+++
Sbjct: 236 VSWTTIIMSNVQIGQEENAVKAFRRMRETDVSPNEFTFAAVISGCATL 283
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 76/284 (26%), Positives = 135/284 (47%), Gaps = 7/284 (2%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M++ G++D +F EMPLR+ SW +I G V +E + F++M +K G
Sbjct: 109 LVDMYMKIGKVDEGCIVFKEMPLRNVVSWTAIIAGLVRAGYNKEALAYFSDMWIQKVGCD 168
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
F + LKAC + + G+++H K G + + +L Y K L+
Sbjct: 169 TYTFSS-----ALKACADSGALNYGREIHCQTLKKGFTAVSFVANTLATMYNKCGKLDYG 223
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
+F + + + V WT I++N + G F+ M + N +TF++V+ C +
Sbjct: 224 LRLFESMTQRDVVSWTTIIMSNVQIGQEENAVKAFRRMRETDVSPNEFTFAAVISGCATL 283
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
G Q+HA++++ GL V ++ MY KC L A VF+ + +++I SW+
Sbjct: 284 GRI-EWGEQLHAHVIRRGLVDSLSVANSIMAMYSKCWQLDLASTVFQGL-SRRDIISWST 341
Query: 292 MLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
M+ GY + G EA +L M+ G + E + C +++
Sbjct: 342 MISGYAQGGCGEEAFDYLSWMRREGPRPNEFAFASVLSVCGNMA 385
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 75/275 (27%), Positives = 125/275 (45%), Gaps = 30/275 (10%)
Query: 31 ELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDV 90
+L H+ +R + +L N ++ M+ C QLD A +F + RD SW+ MI GY
Sbjct: 291 QLHAHVIRR-GLVDSLSVANSIMAMYSKCWQLDLASTVFQGLSRRDIISWSTMISGYAQG 349
Query: 91 ADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSR 150
+E + M R++G F VL C +E GKQ+H + +G +
Sbjct: 350 GCGEEAFDYLSWM--RREGPRPNEFA---FASVLSVCGNMAILEQGKQLHAHVLCVGLEQ 404
Query: 151 NISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMG 210
N + +LIN Y K +++A +F + + +N V WTA I G+ + + FK++
Sbjct: 405 NTMVQSALINMYSKCGSIKEASKIFDEAEYNNIVSWTAMINGYAEHGYSQEAIDLFKKLP 464
Query: 211 RERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLE-----SDEYVQCGLVDMYG 265
+ ++ +S TF +VL AC HA +V +G S + C D YG
Sbjct: 465 KVGLRPDSVTFIAVLAACS------------HAGLVDLGFHYFNSLSKVHQICPSKDHYG 512
Query: 266 -----KCRL--LRDAERVFELIVDKKNIASWNAML 293
CR L DAE + + + +++ W+ +L
Sbjct: 513 CMIDLLCRAGRLNDAESMIQSMPFQRDDVVWSTLL 547
>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
bursa-pastoris]
Length = 706
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 89/287 (31%), Positives = 146/287 (50%), Gaps = 17/287 (5%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ + S G + +A+++FDE+P++D SW +I GY + +Y+E + LF EMMK
Sbjct: 175 LIKGYASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTN---- 230
Query: 112 LLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
V P +V VL AC + ++ELG+QVH + G N+ + +LI+ Y K +E
Sbjct: 231 --VKPDESTMVTVLSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVET 288
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC-- 228
A +F L + + W I + + F+EM R N T S+L AC
Sbjct: 289 ASGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPACAH 348
Query: 229 -GGVDDDGNCGRQMHANIVK--IGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
G +D GR +H I K G+ + ++ L+DMY KC + A++VF+ +++ ++
Sbjct: 349 LGAID----IGRWIHVYIDKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSMLN-RS 403
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
++SWNAM+ G+ +G A M+ GI+ + L ACS
Sbjct: 404 LSSWNAMIFGFAMHGRANPAFDIFSRMRKDGIEPDDITFVGLLSACS 450
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 82/309 (26%), Positives = 127/309 (41%), Gaps = 38/309 (12%)
Query: 62 LDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIV 121
L A +FD + + W M G+ +D + L+ M+ + LV ++
Sbjct: 53 LTYAISVFDSIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMIS-----LGLVPNSYTFP 107
Query: 122 CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQ---- 177
+LKAC + G+Q+HG + KLG ++ + SLI Y K EDA VF Q
Sbjct: 108 FLLKACAKSKAFREGQQIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHR 167
Query: 178 ---------------------------LKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMG 210
+ + V W A I G++ + FKEM
Sbjct: 168 DVVSYTALIKGYASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMM 227
Query: 211 RERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLL 270
+ +K + T +VL AC GRQ+H+ I G S+ + L+D+Y KC +
Sbjct: 228 KTNVKPDESTMVTVLSACAQ-SASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEV 286
Query: 271 RDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIA 330
A +FE + K++ SWN ++ GY LY EA M SG E + + A
Sbjct: 287 ETASGLFEGL-SYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPA 345
Query: 331 CSSISASKI 339
C+ + A I
Sbjct: 346 CAHLGAIDI 354
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 122/253 (48%), Gaps = 13/253 (5%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L +N L+ +++ CG+++TA LF+ + +D SW +I GY + Y+E + LF EM++
Sbjct: 270 LKIVNALIDLYIKCGEVETASGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLR 329
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKL--GSSRNISLTGSLINFYG 163
+ + ++ +L AC +++G+ +H + K G S SL SLI+ Y
Sbjct: 330 SGESPNEVT-----MLSILPACAHLGAIDIGRWIHVYIDKRLKGVSNPSSLRTSLIDMYA 384
Query: 164 KFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSS 223
K +E A VF + + W A I G + F+ F M ++ I+ + TF
Sbjct: 385 KCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANPAFDIFSRMRKDGIEPDDITFVG 444
Query: 224 VLKAC---GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELI 280
+L AC G +D + R M + KI + + Y C ++D+ G L ++AE + +
Sbjct: 445 LLSACSHSGMLDLGRHIFRSMTED-YKITPKLEHY-GC-MIDLLGHSGLFKEAEEMINSM 501
Query: 281 VDKKNIASWNAML 293
+ W ++L
Sbjct: 502 EMDPDGVIWCSLL 514
>gi|296089484|emb|CBI39303.3| unnamed protein product [Vitis vinifera]
Length = 723
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 89/301 (29%), Positives = 154/301 (51%), Gaps = 14/301 (4%)
Query: 45 TLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMM 104
+L N L+ M+ CG++D AR +F+ D SW +I GYV + E + L +M+
Sbjct: 75 PVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRIGSNDEMLRLLVKML 134
Query: 105 KRKKGHMLLVFPAWIIVCVLKACVC--TMNMELGKQVHGLLFKLGSSRNISLTGSLINFY 162
+ L ++ + LKAC + ++E GK +HG KLG ++ + +L++ Y
Sbjct: 135 RHG-----LNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDVVVGTALLDTY 189
Query: 163 GKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFND-----FKEMGRERIKKN 217
K LEDA +F + N V++ A I + F + F EM +K +
Sbjct: 190 AKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFFEMQSRGMKPS 249
Query: 218 SYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVF 277
+TFSS+LKAC + + CG+Q+HA I K L+SDE++ LV++Y + D + F
Sbjct: 250 EFTFSSILKACSTI-EAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGSIEDGLKCF 308
Query: 278 ELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISAS 337
K ++ SW +++VG+++NG + + + SG + E I+ + AC++++A
Sbjct: 309 H-STPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSACANLAAV 367
Query: 338 K 338
K
Sbjct: 368 K 368
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 82/271 (30%), Positives = 128/271 (47%), Gaps = 12/271 (4%)
Query: 72 MPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTM 131
MP R+ SW +I GY + Y E + LF E L + L C T+
Sbjct: 1 MPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSD-----LRLDKFTFSNALSVCGRTL 55
Query: 132 NMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIV 191
++ LG+ +H L+ G + LT SLI+ Y K ++ A VF ++V W + I
Sbjct: 56 DLRLGRLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIA 115
Query: 192 NNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG-VDDDGNCGRQMHANIVKIGL 250
R G ++ +M R + NSY S LKACG CG+ +H VK+GL
Sbjct: 116 GYVRIGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGL 175
Query: 251 ESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIR-----NGLYVEA 305
+ D V L+D Y K L DA ++F+L+ D N+ +NAM+ G+++ + EA
Sbjct: 176 DLDVVVGTALLDTYAKIGDLEDATKIFKLMPD-PNVVMYNAMIAGFLQMETMADEFANEA 234
Query: 306 TKFLYLMKASGIQIQESLINDLRIACSSISA 336
+ M++ G++ E + + ACS+I A
Sbjct: 235 MYLFFEMQSRGMKPSEFTFSSILKACSTIEA 265
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 80/286 (27%), Positives = 124/286 (43%), Gaps = 12/286 (4%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDV---AD--YQECITLFAEMMKR 106
LL + G L+ A ++F MP + + MI G++ + AD E + LF EM R
Sbjct: 185 LLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFFEMQSR 244
Query: 107 KKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166
F + +LKAC E GKQ+H +FK + + +L+ Y
Sbjct: 245 GMKPSEFTFSS-----ILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSG 299
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
+ED F + + V WT+ IV + + G F F E+ K + +T S +L
Sbjct: 300 SIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLS 359
Query: 227 ACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
AC + G Q+HA +K G+ + +Q + MY KC + A F+ +I
Sbjct: 360 ACANLAAV-KSGEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKE-TKNPDI 417
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
SW+ M+ ++G EA LMK SGI + +ACS
Sbjct: 418 VSWSVMISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVACS 463
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 89/355 (25%), Positives = 144/355 (40%), Gaps = 60/355 (16%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRV---NIKPTLLFLNRLLLMHVSCGQLDTARQLF 69
++ ++K C+ + AFE I ++ N++ N L+ ++ G ++ + F
Sbjct: 253 FSSILKACS----TIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGSIEDGLKCF 308
Query: 70 DEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMM--KRKKGHMLLVFPAWIIVCVLKAC 127
P D SW +IVG+V ++ +TLF E++ RK + I +L AC
Sbjct: 309 HSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDE-------FTISIMLSAC 361
Query: 128 VCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWT 187
++ G+Q+H K G + S I Y K ++ A+ F + K + V W+
Sbjct: 362 ANLAAVKSGEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKETKNPDIVSWS 421
Query: 188 AKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--GG--------------- 230
I +N + G + + F+ M I N TF VL AC GG
Sbjct: 422 VMISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVACSHGGLVEEGLRYFEIMKKD 481
Query: 231 -------------VDDDGNCGRQMHAN--IVKIGLESDEYVQCGLVDMYGKCRL------ 269
VD G GR A I+ G E D + L+ CR+
Sbjct: 482 HGITPNVKHSACIVDLLGRAGRLAEAESFIMDSGFEGDPVMWRSLLS---ACRVHKATDT 538
Query: 270 -LRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESL 323
R AERV EL + + AS+ + Y G+ + AT+ LMK G++ + L
Sbjct: 539 GKRVAERVIEL--EPEAAASYVLLYNIYNDAGIQMPATEIRNLMKDRGVKKEPGL 591
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 78/162 (48%), Gaps = 2/162 (1%)
Query: 178 LKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC 237
+ + N V W + I + G +H+V N FKE ++ + +TFS+ L CG D
Sbjct: 1 MPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDL-RL 59
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYI 297
GR +HA I GL + L+DMY KC + A VFE D+ + SWN+++ GY+
Sbjct: 60 GRLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFE-SADELDSVSWNSLIAGYV 118
Query: 298 RNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKI 339
R G E + L M G+ + + AC S +S I
Sbjct: 119 RIGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSI 160
>gi|15233050|ref|NP_191676.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
gi|6850884|emb|CAB71047.1| putative protein [Arabidopsis thaliana]
gi|332646643|gb|AEE80164.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 783
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 100/346 (28%), Positives = 165/346 (47%), Gaps = 43/346 (12%)
Query: 33 LNHIRKRVNIKP-----------TLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWA 81
LN+ + R+ +KP T L N LL G++D ARQ+FD+MP RD +W
Sbjct: 4 LNYRKWRLPLKPFGSCIHSYADRTKLHSNLLLGDLSKSGRVDEARQMFDKMPERDEFTWN 63
Query: 82 VMIVGYVDVADYQECITLFAEMMKR-------------KKGHMLLVF------------P 116
MIV Y + + LF + K G + F P
Sbjct: 64 TMIVAYSNSRRLSDAEKLFRSNPVKNTISWNALISGYCKSGSKVEAFNLFWEMQSDGIKP 123
Query: 117 -AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVF 175
+ + VL+ C + + G+Q+HG K G ++++ L+ Y + + + +A+++F
Sbjct: 124 NEYTLGSVLRMCTSLVLLLRGEQIHGHTIKTGFDLDVNVVNGLLAMYAQCKRISEAEYLF 183
Query: 176 SQLK-RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDD 234
++ N V WT+ + + G + F+++ RE + N YTF SVL AC V
Sbjct: 184 ETMEGEKNNVTWTSMLTGYSQNGFAFKAIECFRDLRREGNQSNQYTFPSVLTACASV-SA 242
Query: 235 GNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE-LIVDKKNIASWNAML 293
G Q+H IVK G +++ YVQ L+DMY KCR + A + E + VD ++ SWN+M+
Sbjct: 243 CRVGVQVHCCIVKSGFKTNIYVQSALIDMYAKCREMESARALLEGMEVD--DVVSWNSMI 300
Query: 294 VGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKI 339
VG +R GL EA M ++I + I + + C ++S +++
Sbjct: 301 VGCVRQGLIGEALSMFGRMHERDMKIDDFTIPSI-LNCFALSRTEM 345
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 84/290 (28%), Positives = 130/290 (44%), Gaps = 13/290 (4%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMPLRDFN-SWAVMIVGYVDVADYQECITLFAEMMKRK 107
+N LL M+ C ++ A LF+ M N +W M+ GY + I F ++ +
Sbjct: 163 VNGLLAMYAQCKRISEAEYLFETMEGEKNNVTWTSMLTGYSQNGFAFKAIECFRDLRREG 222
Query: 108 KGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
FP+ VL AC +G QVH + K G NI + +LI+ Y K R
Sbjct: 223 NQSNQYTFPS-----VLTACASVSACRVGVQVHCCIVKSGFKTNIYVQSALIDMYAKCRE 277
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
+E A + ++ + V W + IV R+G + + F M +K + +T S+L
Sbjct: 278 MESARALLEGMEVDDVVSWNSMIVGCVRQGLIGEALSMFGRMHERDMKIDDFTIPSILNC 337
Query: 228 CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
+ H IVK G + + V LVDMY K ++ A +VFE +++ K++
Sbjct: 338 FALSRTEMKIASSAHCLIVKTGYATYKLVNNALVDMYAKRGIMDSALKVFEGMIE-KDVI 396
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISAS 337
SW A++ G NG Y EA K M+ GI D + S +SAS
Sbjct: 397 SWTALVTGNTHNGSYDEALKLFCNMRVGGI------TPDKIVTASVLSAS 440
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/276 (26%), Positives = 127/276 (46%), Gaps = 6/276 (2%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
+ K + + L+ M+ C ++++AR L + M + D SW MIVG V E ++
Sbjct: 255 KSGFKTNIYVQSALIDMYAKCREMESARALLEGMEVDDVVSWNSMIVGCVRQGLIGEALS 314
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
+F M +R P+ I+ C + M++ H L+ K G + + +L
Sbjct: 315 MFGRMHERDMKIDDFTIPS-ILNCF---ALSRTEMKIASSAHCLIVKTGYATYKLVNNAL 370
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
++ Y K ++ A VF + + + WTA + N G + + F M I +
Sbjct: 371 VDMYAKRGIMDSALKVFEGMIEKDVISWTALVTGNTHNGSYDEALKLFCNMRVGGITPDK 430
Query: 219 YTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE 278
+SVL A + G+Q+H N +K G S V LV MY KC L DA +F
Sbjct: 431 IVTASVLSASAELTLL-EFGQQVHGNYIKSGFPSSLSVNNSLVTMYTKCGSLEDANVIFN 489
Query: 279 LIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKA 314
+ + +++ +W ++VGY +NGL +A ++ M+
Sbjct: 490 SM-EIRDLITWTCLIVGYAKNGLLEDAQRYFDSMRT 524
>gi|359482660|ref|XP_002285225.2| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
chloroplastic-like [Vitis vinifera]
Length = 872
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 107/338 (31%), Positives = 164/338 (48%), Gaps = 17/338 (5%)
Query: 4 LCLPITTDMYT--CLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQ 61
L + I D+YT C+++ C D A E+ H+ R + + +N L+ M+V CG
Sbjct: 187 LWVGIRPDVYTFPCVLRTCGGLPDLARGREVHLHV-IRYGFESDVDVVNALITMYVKCGD 245
Query: 62 LDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI-I 120
+ +AR +FD MP RD SW MI GY + E + LF M + V P + +
Sbjct: 246 IFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMRE------FFVDPDLMTM 299
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
V+ AC + LG++VHG + K G +S+ SLI + C ++A+ VFS+++
Sbjct: 300 TSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEF 359
Query: 181 HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDG--NCG 238
+ V WTA I + G + + M E + + T +SVL AC G+ G + G
Sbjct: 360 KDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGL---GLLDKG 416
Query: 239 RQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIR 298
+H + GL S V L+DMY KCR + A VF I + KN+ SW ++++G
Sbjct: 417 IMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPN-KNVISWTSIILGLRL 475
Query: 299 NGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
N EA F M S +L++ L AC+ I A
Sbjct: 476 NYRSFEALFFFQQMILSLKPNSVTLVSVLS-ACARIGA 512
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 88/339 (25%), Positives = 159/339 (46%), Gaps = 18/339 (5%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCG 60
M L + + + Y L++ C +++ ++ + +++ K V + + N LL M V G
Sbjct: 85 MQELQVSVEEETYIALLRLCEWKRAASEGSRVHSYVSKTVT-RLGVRLGNALLSMFVRFG 143
Query: 61 QLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWII 120
L A +F +M RD SW V++ GY + E + L+ M+ + FP
Sbjct: 144 DLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFP---- 199
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
CVL+ C ++ G++VH + + G ++ + +LI Y K + A VF ++ R
Sbjct: 200 -CVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPR 258
Query: 181 HNTVVWTAKIV-----NNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDG 235
+ + W A I + C EG F M + + T +SV+ AC + D+
Sbjct: 259 RDRISWNAMISGYFENDVCLEG-----LRLFFMMREFFVDPDLMTMTSVISACEALGDE- 312
Query: 236 NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
GR++H ++K G ++ V L+ M+ +AE VF + + K++ SW AM+ G
Sbjct: 313 RLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKM-EFKDLVSWTAMISG 371
Query: 296 YIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
Y +NGL +A + +M+ G+ E I + AC+ +
Sbjct: 372 YEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGL 410
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 88/286 (30%), Positives = 137/286 (47%), Gaps = 15/286 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ MH S G D A +F +M +D SW MI GY ++ + + M
Sbjct: 335 NSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIME----- 389
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
H +V I VL AC ++ G +H + G + + + SLI+ Y K RC++
Sbjct: 390 HEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCID 449
Query: 170 DADFVFSQLKRHNTVVWTAKIVN---NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
A VF ++ N + WT+ I+ N R F +F F++M +K NS T SVL
Sbjct: 450 KALEVFHRIPNKNVISWTSIILGLRLNYRS--FEALFF-FQQMILS-LKPNSVTLVSVLS 505
Query: 227 ACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
AC + +CG+++HA+ ++ GL D ++ L+DMY +C + A F +K++
Sbjct: 506 ACARIGAL-SCGKEIHAHALRTGLGFDGFLPNALLDMYVRCGRMEPAWNQFNSC--EKDV 562
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
ASWN +L GY + G A + + M S + E L ACS
Sbjct: 563 ASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCACS 608
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 108/219 (49%), Gaps = 2/219 (0%)
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
+ +L+ C G +VH + K + + L +L++ + +F L +A +VF ++
Sbjct: 98 IALLRLCEWKRAASEGSRVHSYVSKTVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKMAE 157
Query: 181 HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQ 240
+ W + + G+F + N + M I+ + YTF VL+ CGG+ D GR+
Sbjct: 158 RDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLAR-GRE 216
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
+H ++++ G ESD V L+ MY KC + A VF+ + + I SWNAM+ GY N
Sbjct: 217 VHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRI-SWNAMISGYFEND 275
Query: 301 LYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKI 339
+ +E + ++M+ + + + AC ++ ++
Sbjct: 276 VCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERL 314
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/264 (21%), Positives = 111/264 (42%), Gaps = 11/264 (4%)
Query: 32 LLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVA 91
+L+ R + ++ N L+ M+ C +D A ++F +P ++ SW +I+G
Sbjct: 418 MLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNY 477
Query: 92 DYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRN 151
E + F +M+ K + + +V VL AC + GK++H + G +
Sbjct: 478 RSFEALFFFQQMILSLKPNSV------TLVSVLSACARIGALSCGKEIHAHALRTGLGFD 531
Query: 152 ISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGR 211
L +L++ Y + +E A F+ ++ + W + ++G F +M
Sbjct: 532 GFLPNALLDMYVRCGRMEPAWNQFNSCEK-DVASWNILLTGYAQQGKGGLAVELFHKMIE 590
Query: 212 ERIKKNSYTFSSVLKACG--GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRL 269
+ + TF+S+L AC G+ DG + + I Y +VD+ G+
Sbjct: 591 SDVNPDEITFTSLLCACSRSGMVTDGLEYFESMEHKFHIAPNLKHYAS--VVDLLGRAGR 648
Query: 270 LRDAERVFELIVDKKNIASWNAML 293
L DA + + + A W A+L
Sbjct: 649 LEDAYEFIKKMPIDPDPAIWGALL 672
>gi|297736528|emb|CBI25399.3| unnamed protein product [Vitis vinifera]
Length = 846
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 94/301 (31%), Positives = 147/301 (48%), Gaps = 18/301 (5%)
Query: 43 KPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAE 102
K ++ N ++ C + A +FDEMP R+ SW VMIVG + + + F E
Sbjct: 98 KDLMVLFNHAAHVYSKCSEFRAACGVFDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCE 157
Query: 103 MMKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINF 161
M+ + P + ++++C+ ++ELGK VH + G + +I ++ SL+N
Sbjct: 158 MLNSG------ILPDKFAYSAIIQSCIGLDSLELGKMVHAQIVMRGFATHIFVSTSLLNM 211
Query: 162 YGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTF 221
Y K +ED+ +VF+ + HN V W A I G + F+ F M N YT
Sbjct: 212 YAKLGSIEDSYWVFNMMTEHNQVSWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTL 271
Query: 222 SSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFEL-I 280
SV KA G + D N G+++ ++G+E + V L+DMY KC L DA VF+
Sbjct: 272 VSVSKAVGKLVDV-NMGKEVQNCASELGIEGNVLVGTALIDMYSKCGSLHDARSVFDTNF 330
Query: 281 VDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS---SISAS 337
++ WNAM+ GY ++G EA + M +GI +DL CS +I+AS
Sbjct: 331 INCGVNTPWNAMISGYSQSGCSQEALELYVQMCQNGI------TSDLYTYCSVFNAIAAS 384
Query: 338 K 338
K
Sbjct: 385 K 385
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 86/306 (28%), Positives = 144/306 (47%), Gaps = 26/306 (8%)
Query: 38 KRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDF------NSWAVMIVGYVDVA 91
+ I+ +L L+ M+ CG L AR +FD +F W MI GY
Sbjct: 295 SELGIEGNVLVGTALIDMYSKCGSLHDARSVFD----TNFINCGVNTPWNAMISGYSQSG 350
Query: 92 DYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSS-R 150
QE + L+ +M + L + V A + +++ G+ VHG++ K G
Sbjct: 351 CSQEALELYVQMCQNGITSDLYTY-----CSVFNAIAASKSLQFGRVVHGMVLKCGLDLM 405
Query: 151 NISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMG 210
+S+ ++ + Y K LED VF +++ + V WT + + + F M
Sbjct: 406 VVSVNNAIADAYSKCGFLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMR 465
Query: 211 RERIKKNSYTFSSVLKACGGVDDDGNC----GRQMHANIVKIGLESDEYVQCGLVDMYGK 266
E N +TFSSVL +C + C GRQ+H + K GL++++ ++ L+DMY K
Sbjct: 466 EEGFAPNQFTFSSVLISCASL-----CFLEYGRQVHGLLCKAGLDTEKCIESALIDMYAK 520
Query: 267 CRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLIND 326
C + +A +VF+ I +I SW A++ GY ++GL +A + M+ SGI+ +
Sbjct: 521 CGSITEAGKVFDKI-SNPDIVSWTAIISGYAQHGLVEDALQLFRRMELSGIKANAVTLLC 579
Query: 327 LRIACS 332
+ ACS
Sbjct: 580 VLFACS 585
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 70/248 (28%), Positives = 110/248 (44%), Gaps = 9/248 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N + + CG L+ R++FD M RD SW ++ Y + +E + F M +
Sbjct: 411 NAIADAYSKCGFLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFA 470
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
F + +I C A +C + E G+QVHGLL K G + +LI+ Y K +
Sbjct: 471 PNQFTFSSVLISC---ASLCFL--EYGRQVHGLLCKAGLDTEKCIESALIDMYAKCGSIT 525
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC- 228
+A VF ++ + V WTA I + G F+ M IK N+ T VL AC
Sbjct: 526 EAGKVFDKISNPDIVSWTAIISGYAQHGLVEDALQLFRRMELSGIKANAVTLLCVLFACS 585
Query: 229 -GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
GG+ ++G Q + + E + Y C ++D+ G+ L DA + + N
Sbjct: 586 HGGMVEEGLFYFQQMEDGYGVVPEMEHYA-C-IIDLLGRVGRLDDAMEFIRKMPMEPNEM 643
Query: 288 SWNAMLVG 295
W +L G
Sbjct: 644 VWQTLLGG 651
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 82/328 (25%), Positives = 145/328 (44%), Gaps = 17/328 (5%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIK--PTLLFLNRLLL-MHVSCGQLDTARQLF 69
Y+ +I+ C + EL + ++ ++ T +F++ LL M+ G ++ + +F
Sbjct: 170 YSAIIQSCI----GLDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVF 225
Query: 70 DEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVC 129
+ M + SW MI G + E LF M K G + +V V KA
Sbjct: 226 NMMTEHNQVSWNAMISGCTSNGLHLEAFDLFVRM---KNGA--CTPNMYTLVSVSKAVGK 280
Query: 130 TMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQ--LKRHNTVVWT 187
+++ +GK+V +LG N+ + +LI+ Y K L DA VF + W
Sbjct: 281 LVDVNMGKEVQNCASELGIEGNVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWN 340
Query: 188 AKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVK 247
A I + G + + +M + I + YT+ SV A GR +H ++K
Sbjct: 341 AMISGYSQSGCSQEALELYVQMCQNGITSDLYTYCSVFNAIAA-SKSLQFGRVVHGMVLK 399
Query: 248 IGLE-SDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEAT 306
GL+ V + D Y KC L D +VF+ + ++++I SW ++ Y ++ L EA
Sbjct: 400 CGLDLMVVSVNNAIADAYSKCGFLEDVRKVFDRM-EERDIVSWTTLVTAYSQSSLGEEAL 458
Query: 307 KFLYLMKASGIQIQESLINDLRIACSSI 334
LM+ G + + + I+C+S+
Sbjct: 459 ATFCLMREEGFAPNQFTFSSVLISCASL 486
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 94/196 (47%), Gaps = 4/196 (2%)
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRN--ISLTGSLINFYGKFRCLEDADFVFSQ 177
++ VL+ C ++ K VHGL+ K + L + Y K A VF +
Sbjct: 67 LIDVLRDCAEKGSIREAKAVHGLVLKSNFEDKDLMVLFNHAAHVYSKCSEFRAACGVFDE 126
Query: 178 LKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC 237
+ + N WT IV + G F F F EM I + + +S+++++C G+D
Sbjct: 127 MPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSCIGLDSL-EL 185
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYI 297
G+ +HA IV G + +V L++MY K + D+ VF ++ + N SWNAM+ G
Sbjct: 186 GKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTE-HNQVSWNAMISGCT 244
Query: 298 RNGLYVEATKFLYLMK 313
NGL++EA MK
Sbjct: 245 SNGLHLEAFDLFVRMK 260
>gi|225448607|ref|XP_002274158.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Vitis vinifera]
Length = 820
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 94/301 (31%), Positives = 147/301 (48%), Gaps = 18/301 (5%)
Query: 43 KPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAE 102
K ++ N ++ C + A +FDEMP R+ SW VMIVG + + + F E
Sbjct: 152 KDLMVLFNHAAHVYSKCSEFRAACGVFDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCE 211
Query: 103 MMKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINF 161
M+ + P + ++++C+ ++ELGK VH + G + +I ++ SL+N
Sbjct: 212 MLNSG------ILPDKFAYSAIIQSCIGLDSLELGKMVHAQIVMRGFATHIFVSTSLLNM 265
Query: 162 YGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTF 221
Y K +ED+ +VF+ + HN V W A I G + F+ F M N YT
Sbjct: 266 YAKLGSIEDSYWVFNMMTEHNQVSWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTL 325
Query: 222 SSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFEL-I 280
SV KA G + D N G+++ ++G+E + V L+DMY KC L DA VF+
Sbjct: 326 VSVSKAVGKLVDV-NMGKEVQNCASELGIEGNVLVGTALIDMYSKCGSLHDARSVFDTNF 384
Query: 281 VDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS---SISAS 337
++ WNAM+ GY ++G EA + M +GI +DL CS +I+AS
Sbjct: 385 INCGVNTPWNAMISGYSQSGCSQEALELYVQMCQNGI------TSDLYTYCSVFNAIAAS 438
Query: 338 K 338
K
Sbjct: 439 K 439
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 86/302 (28%), Positives = 146/302 (48%), Gaps = 18/302 (5%)
Query: 38 KRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLR-DFNS-WAVMIVGYVDVADYQE 95
+ I+ +L L+ M+ CG L AR +FD + N+ W MI GY QE
Sbjct: 349 SELGIEGNVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSGCSQE 408
Query: 96 CITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSS-RNISL 154
+ L+ +M + L + + V A + +++ G+ VHG++ K G +S+
Sbjct: 409 ALELYVQMCQNGITSDLYTYCS-----VFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSV 463
Query: 155 TGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERI 214
++ + Y K LED VF +++ + V WT + + + F M E
Sbjct: 464 NNAIADAYSKCGFLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGF 523
Query: 215 KKNSYTFSSVLKACGGVDDDGNC----GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLL 270
N +TFSSVL +C + C GRQ+H + K GL++++ ++ L+DMY KC +
Sbjct: 524 APNQFTFSSVLISCASL-----CFLEYGRQVHGLLCKAGLDTEKCIESALIDMYAKCGSI 578
Query: 271 RDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIA 330
+A +VF+ I +I SW A++ GY ++GL +A + M+ SGI+ + + A
Sbjct: 579 TEAGKVFDKI-SNPDIVSWTAIISGYAQHGLVEDALQLFRRMELSGIKANAVTLLCVLFA 637
Query: 331 CS 332
CS
Sbjct: 638 CS 639
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 70/248 (28%), Positives = 110/248 (44%), Gaps = 9/248 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N + + CG L+ R++FD M RD SW ++ Y + +E + F M +
Sbjct: 465 NAIADAYSKCGFLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFA 524
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
F + +I C A +C + E G+QVHGLL K G + +LI+ Y K +
Sbjct: 525 PNQFTFSSVLISC---ASLCFL--EYGRQVHGLLCKAGLDTEKCIESALIDMYAKCGSIT 579
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC- 228
+A VF ++ + V WTA I + G F+ M IK N+ T VL AC
Sbjct: 580 EAGKVFDKISNPDIVSWTAIISGYAQHGLVEDALQLFRRMELSGIKANAVTLLCVLFACS 639
Query: 229 -GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
GG+ ++G Q + + E + Y C ++D+ G+ L DA + + N
Sbjct: 640 HGGMVEEGLFYFQQMEDGYGVVPEMEHYA-C-IIDLLGRVGRLDDAMEFIRKMPMEPNEM 697
Query: 288 SWNAMLVG 295
W +L G
Sbjct: 698 VWQTLLGG 705
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 82/328 (25%), Positives = 145/328 (44%), Gaps = 17/328 (5%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIK--PTLLFLNRLLL-MHVSCGQLDTARQLF 69
Y+ +I+ C + EL + ++ ++ T +F++ LL M+ G ++ + +F
Sbjct: 224 YSAIIQSCI----GLDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVF 279
Query: 70 DEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVC 129
+ M + SW MI G + E LF M K G + +V V KA
Sbjct: 280 NMMTEHNQVSWNAMISGCTSNGLHLEAFDLFVRM---KNG--ACTPNMYTLVSVSKAVGK 334
Query: 130 TMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQ--LKRHNTVVWT 187
+++ +GK+V +LG N+ + +LI+ Y K L DA VF + W
Sbjct: 335 LVDVNMGKEVQNCASELGIEGNVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWN 394
Query: 188 AKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVK 247
A I + G + + +M + I + YT+ SV A GR +H ++K
Sbjct: 395 AMISGYSQSGCSQEALELYVQMCQNGITSDLYTYCSVFNAIAA-SKSLQFGRVVHGMVLK 453
Query: 248 IGLE-SDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEAT 306
GL+ V + D Y KC L D +VF+ + ++++I SW ++ Y ++ L EA
Sbjct: 454 CGLDLMVVSVNNAIADAYSKCGFLEDVRKVFDRM-EERDIVSWTTLVTAYSQSSLGEEAL 512
Query: 307 KFLYLMKASGIQIQESLINDLRIACSSI 334
LM+ G + + + I+C+S+
Sbjct: 513 ATFCLMREEGFAPNQFTFSSVLISCASL 540
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 94/196 (47%), Gaps = 4/196 (2%)
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRN--ISLTGSLINFYGKFRCLEDADFVFSQ 177
++ VL+ C ++ K VHGL+ K + L + Y K A VF +
Sbjct: 121 LIDVLRDCAEKGSIREAKAVHGLVLKSNFEDKDLMVLFNHAAHVYSKCSEFRAACGVFDE 180
Query: 178 LKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC 237
+ + N WT IV + G F F F EM I + + +S+++++C G+D
Sbjct: 181 MPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSCIGLDSL-EL 239
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYI 297
G+ +HA IV G + +V L++MY K + D+ VF ++ + N SWNAM+ G
Sbjct: 240 GKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTE-HNQVSWNAMISGCT 298
Query: 298 RNGLYVEATKFLYLMK 313
NGL++EA MK
Sbjct: 299 SNGLHLEAFDLFVRMK 314
>gi|449501934|ref|XP_004161498.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Cucumis sativus]
Length = 638
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 90/301 (29%), Positives = 150/301 (49%), Gaps = 8/301 (2%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
Y ++ EC Q+ + H+ K + P++ RL++++ C L AR +FDEM
Sbjct: 65 YDSILNECVSQRAIREGQRVHTHMIKTCYL-PSVYLRTRLIVLYNKCDCLGDARGMFDEM 123
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN 132
P R+ SW MI Y E + LF EM++ F +L +C ++
Sbjct: 124 PQRNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTF-----ATILTSCYGSLG 178
Query: 133 MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192
E G+Q+H + K ++ + SL++ Y K + DA VF L + V TA I
Sbjct: 179 FETGRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISG 238
Query: 193 NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLES 252
+ G + F+++ E + NS T++SVL A G+ N G+Q+H+++++ G S
Sbjct: 239 YAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAAL-NHGKQVHSHVLRSGQYS 297
Query: 253 DEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLM 312
+ L+DMY KC + A R+F+ + ++ I SWNAMLVGY ++G+ E + LM
Sbjct: 298 YVVLLNSLIDMYSKCGNVCYARRIFDSMPERTCI-SWNAMLVGYSKHGMAREVLELFKLM 356
Query: 313 K 313
+
Sbjct: 357 R 357
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 104/214 (48%), Gaps = 2/214 (0%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
+L CV + G++VH + K ++ L LI Y K CL DA +F ++ + N
Sbjct: 68 ILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDARGMFDEMPQRN 127
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
V WTA I + G + N F EM R + N +TF+++L +C G GRQ+H
Sbjct: 128 VVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYG-SLGFETGRQIH 186
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
+ +K ES +V L+DMY K + DA VF + ++++ + A++ GY + GL
Sbjct: 187 SIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCL-PERDVVACTAIISGYAQMGLD 245
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
EA K ++ G+ + A S ++A
Sbjct: 246 EEALKLFRQLQIEGMNSNSVTYASVLTALSGLAA 279
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 65/266 (24%), Positives = 118/266 (44%), Gaps = 13/266 (4%)
Query: 33 LNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVAD 92
++ I + N + + + LL M+ G++ A +F +P RD + +I GY +
Sbjct: 185 IHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMGL 244
Query: 93 YQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNI 152
+E + LF ++ + + + VL A + GKQVH + + G +
Sbjct: 245 DEEALKLFRQLQIEGMNSNSVTYAS-----VLTALSGLAALNHGKQVHSHVLRSGQYSYV 299
Query: 153 SLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRE 212
L SLI+ Y K + A +F + + W A +V + G +V FK M E
Sbjct: 300 VLLNSLIDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKHGMAREVLELFKLMREE 359
Query: 213 -RIKKNSYTFSSVLKAC--GGVDDDGNCGRQMHANIV--KIGLESDEYVQCGLVDMYGKC 267
++K +S T+ +VL C G ++D G ++ N+V K G+E D +VD+ G+
Sbjct: 360 NKVKPDSITYLAVLSGCSHGQLED---MGLEIFYNMVNGKDGIEPDIGHYGCVVDLLGRA 416
Query: 268 RLLRDAERVFELIVDKKNIASWNAML 293
+ +A + + A W ++L
Sbjct: 417 GRVEEAFDFIKKMPFVPTAAIWGSLL 442
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 72/154 (46%), Gaps = 10/154 (6%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
++ LN L+ M+ CG + AR++FD MP R SW M+VGY +E + LF M +
Sbjct: 299 VVLLNSLIDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKHGMAREVLELFKLMRE 358
Query: 106 RKKGHMLLVFPAWII-VCVLKACVCTMNMELGKQVHGLLF--KLGSSRNISLTGSLINFY 162
K V P I + VL C ++G ++ + K G +I G +++
Sbjct: 359 ENK-----VKPDSITYLAVLSGCSHGQLEDMGLEIFYNMVNGKDGIEPDIGHYGCVVDLL 413
Query: 163 GKFRCLEDA-DFVFSQLKRHNTVVWTAKIVNNCR 195
G+ +E+A DF+ +W ++ +CR
Sbjct: 414 GRAGRVEEAFDFIKKMPFVPTAAIW-GSLLGSCR 446
>gi|449437930|ref|XP_004136743.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Cucumis sativus]
Length = 666
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 89/301 (29%), Positives = 151/301 (50%), Gaps = 8/301 (2%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
Y ++ EC Q+ + H+ K + P++ RL++++ C L AR++FDEM
Sbjct: 93 YDTILNECVSQRAIREGQRVHTHMIKTCYL-PSVYLRTRLIVLYNKCDCLGDAREMFDEM 151
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN 132
P ++ SW MI Y E + LF EM++ F +L +C ++
Sbjct: 152 PQKNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTF-----ATILTSCYGSLG 206
Query: 133 MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192
E G+Q+H + K ++ + SL++ Y K + DA VF L + V TA I
Sbjct: 207 FETGRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISG 266
Query: 193 NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLES 252
+ G + F+++ E + NS T++SVL A G+ N G+Q+H+++++ G S
Sbjct: 267 YAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAAL-NHGKQVHSHVLRSGQYS 325
Query: 253 DEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLM 312
+ L+DMY KC + A R+F+ + ++ I SWNAMLVGY ++G+ E + LM
Sbjct: 326 YVVLLNSLIDMYSKCGNVCYARRIFDSMPERTCI-SWNAMLVGYSKHGMAREVLELFKLM 384
Query: 313 K 313
+
Sbjct: 385 R 385
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 104/214 (48%), Gaps = 2/214 (0%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
+L CV + G++VH + K ++ L LI Y K CL DA +F ++ + N
Sbjct: 96 ILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDAREMFDEMPQKN 155
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
V WTA I + G + N F EM R + N +TF+++L +C G GRQ+H
Sbjct: 156 VVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYG-SLGFETGRQIH 214
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
+ +K ES +V L+DMY K + DA VF + ++++ + A++ GY + GL
Sbjct: 215 SIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCL-PERDVVACTAIISGYAQMGLD 273
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
EA K ++ G+ + A S ++A
Sbjct: 274 EEALKLFRQLQIEGMNSNSVTYASVLTALSGLAA 307
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 65/266 (24%), Positives = 118/266 (44%), Gaps = 13/266 (4%)
Query: 33 LNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVAD 92
++ I + N + + + LL M+ G++ A +F +P RD + +I GY +
Sbjct: 213 IHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMGL 272
Query: 93 YQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNI 152
+E + LF ++ + + + VL A + GKQVH + + G +
Sbjct: 273 DEEALKLFRQLQIEGMNSNSVTYAS-----VLTALSGLAALNHGKQVHSHVLRSGQYSYV 327
Query: 153 SLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRE 212
L SLI+ Y K + A +F + + W A +V + G +V FK M E
Sbjct: 328 VLLNSLIDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKHGMAREVLELFKLMREE 387
Query: 213 -RIKKNSYTFSSVLKAC--GGVDDDGNCGRQMHANIV--KIGLESDEYVQCGLVDMYGKC 267
++K +S T+ +VL C G ++D G ++ N+V K G+E D +VD+ G+
Sbjct: 388 NKVKPDSITYLAVLSGCSHGQLED---MGLEIFYNMVNGKDGIEPDIGHYGCVVDLLGRA 444
Query: 268 RLLRDAERVFELIVDKKNIASWNAML 293
+ +A + + A W ++L
Sbjct: 445 GRVEEAFDFIKKMPFVPTAAIWGSLL 470
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 72/154 (46%), Gaps = 10/154 (6%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
++ LN L+ M+ CG + AR++FD MP R SW M+VGY +E + LF M +
Sbjct: 327 VVLLNSLIDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKHGMAREVLELFKLMRE 386
Query: 106 RKKGHMLLVFPAWII-VCVLKACVCTMNMELGKQVHGLLF--KLGSSRNISLTGSLINFY 162
K V P I + VL C ++G ++ + K G +I G +++
Sbjct: 387 ENK-----VKPDSITYLAVLSGCSHGQLEDMGLEIFYNMVNGKDGIEPDIGHYGCVVDLL 441
Query: 163 GKFRCLEDA-DFVFSQLKRHNTVVWTAKIVNNCR 195
G+ +E+A DF+ +W ++ +CR
Sbjct: 442 GRAGRVEEAFDFIKKMPFVPTAAIW-GSLLGSCR 474
>gi|356570738|ref|XP_003553542.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
mitochondrial-like [Glycine max]
Length = 777
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 96/334 (28%), Positives = 155/334 (46%), Gaps = 10/334 (2%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCG 60
+ N + + Y LI CT + + +HI K N +P L+ N +L M+ CG
Sbjct: 71 LKNSSIQLEPSTYVNLILACTNVRSLKYGKRIHDHILKS-NCQPDLVLQNHILNMYGKCG 129
Query: 61 QLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWII 120
L AR+ FD M LR SW +MI GY + I ++ +M++ L F +
Sbjct: 130 SLKDARKAFDTMQLRSVVSWTIMISGYSQNGQENDAIIMYIQMLRSGYFPDQLTFGS--- 186
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
++KAC +++LG Q+HG + K G ++ +LI+ Y KF + A VF+ +
Sbjct: 187 --IIKACCIAGDIDLGGQLHGHVIKSGYDHHLIAQNALISMYTKFGQIAHASDVFTMIST 244
Query: 181 HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERI-KKNSYTFSSVLKACGGVDDDGNCGR 239
+ + W + I + G+ + F++M R+ + + N + F SV AC + GR
Sbjct: 245 KDLISWASMITGFTQLGYEIEALYLFRDMFRQGVYQPNEFIFGSVFSACRSLLKP-EFGR 303
Query: 240 QMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRN 299
Q+ K GL + + C L DMY K L A+R F I + ++ SWNA++ + N
Sbjct: 304 QIQGMCAKFGLGRNVFAGCSLCDMYAKFGFLPSAKRAFYQI-ESPDLVSWNAIIAA-LAN 361
Query: 300 GLYVEATKFLYLMKASGIQIQESLINDLRIACSS 333
EA F M G+ + +L AC S
Sbjct: 362 SDVNEAIYFFCQMIHMGLMPDDITFLNLLCACGS 395
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 89/300 (29%), Positives = 138/300 (46%), Gaps = 7/300 (2%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
+ +IK C D +L H+ K L+ N L+ M+ GQ+ A +F +
Sbjct: 184 FGSIIKACCIAGDIDLGGQLHGHVIKS-GYDHHLIAQNALISMYTKFGQIAHASDVFTMI 242
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN 132
+D SWA MI G+ + E + LF +M ++ + +I V AC +
Sbjct: 243 STKDLISWASMITGFTQLGYEIEALYLFRDMFRQG----VYQPNEFIFGSVFSACRSLLK 298
Query: 133 MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192
E G+Q+ G+ K G RN+ SL + Y KF L A F Q++ + V W A I+
Sbjct: 299 PEFGRQIQGMCAKFGLGRNVFAGCSLCDMYAKFGFLPSAKRAFYQIESPDLVSWNA-IIA 357
Query: 193 NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLES 252
++ F +M + + TF ++L ACG N G Q+H+ I+K+GL+
Sbjct: 358 ALANSDVNEAIYFFCQMIHMGLMPDDITFLNLLCACGS-PMTLNQGMQIHSYIIKMGLDK 416
Query: 253 DEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLM 312
V L+ MY KC L DA VF+ I + N+ SWNA+L ++ EA + LM
Sbjct: 417 VAAVCNSLLTMYTKCSNLHDAFNVFKDISENGNLVSWNAILSACSQHKQPGEAFRLFKLM 476
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 85/281 (30%), Positives = 132/281 (46%), Gaps = 9/281 (3%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+ G L +A++ F ++ D SW +I + +D E I F +M+ HM L+
Sbjct: 327 MYAKFGFLPSAKRAFYQIESPDLVSWNAIIAALAN-SDVNEAIYFFCQMI-----HMGLM 380
Query: 115 FPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFV 174
+ +L AC M + G Q+H + K+G + ++ SL+ Y K L DA V
Sbjct: 381 PDDITFLNLLCACGSPMTLNQGMQIHSYIIKMGLDKVAAVCNSLLTMYTKCSNLHDAFNV 440
Query: 175 FSQLKRH-NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDD 233
F + + N V W A + + + F FK M K ++ T +++L C +
Sbjct: 441 FKDISENGNLVSWNAILSACSQHKQPGEAFRLFKLMLFSENKPDNITITTILGTCAELVS 500
Query: 234 DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
G Q+H VK GL D V L+DMY KC LL+ A VF+ +I SW++++
Sbjct: 501 L-EVGNQVHCFSVKSGLVVDVSVSNRLIDMYAKCGLLKHARYVFD-STQNPDIVSWSSLI 558
Query: 294 VGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
VGY + GL EA +M+ G+Q E + ACS I
Sbjct: 559 VGYAQFGLGQEALNLFRMMRNLGVQPNEVTYLGVLSACSHI 599
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/243 (26%), Positives = 114/243 (46%), Gaps = 7/243 (2%)
Query: 93 YQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNI 152
Y+E + F +K + + P+ + +L AC +++ GK++H + K ++
Sbjct: 60 YREALDTFNFHLKNSS---IQLEPSTYVNLIL-ACTNVRSLKYGKRIHDHILKSNCQPDL 115
Query: 153 SLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRE 212
L ++N YGK L+DA F ++ + V WT I + G + + +M R
Sbjct: 116 VLQNHILNMYGKCGSLKDARKAFDTMQLRSVVSWTIMISGYSQNGQENDAIIMYIQMLRS 175
Query: 213 RIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRD 272
+ TF S++KAC + D + G Q+H +++K G + Q L+ MY K +
Sbjct: 176 GYFPDQLTFGSIIKAC-CIAGDIDLGGQLHGHVIKSGYDHHLIAQNALISMYTKFGQIAH 234
Query: 273 AERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGI-QIQESLINDLRIAC 331
A VF +I K++ SW +M+ G+ + G +EA M G+ Q E + + AC
Sbjct: 235 ASDVFTMI-STKDLISWASMITGFTQLGYEIEALYLFRDMFRQGVYQPNEFIFGSVFSAC 293
Query: 332 SSI 334
S+
Sbjct: 294 RSL 296
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 112/252 (44%), Gaps = 18/252 (7%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLR-DFNSWAVMIVGYVDVADYQECITLFAEMM--KR 106
N LL M+ C L A +F ++ + SW ++ E LF M+ +
Sbjct: 422 NSLLTMYTKCSNLHDAFNVFKDISENGNLVSWNAILSACSQHKQPGEAFRLFKLMLFSEN 481
Query: 107 KKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166
K ++ I +L C +++E+G QVH K G ++S++ LI+ Y K
Sbjct: 482 KPDNI-------TITTILGTCAELVSLEVGNQVHCFSVKSGLVVDVSVSNRLIDMYAKCG 534
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
L+ A +VF + + V W++ IV + G + N F+ M ++ N T+ VL
Sbjct: 535 LLKHARYVFDSTQNPDIVSWSSLIVGYAQFGLGQEALNLFRMMRNLGVQPNEVTYLGVLS 594
Query: 227 AC---GGVDDDGNCGRQMHANIVKIGL-ESDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282
AC G V++ + M +++G+ + E+V C +VD+ + L +AE +
Sbjct: 595 ACSHIGLVEEGWHLYNTME---IELGIPPTREHVSC-MVDLLARAGCLYEAENFIKKTGF 650
Query: 283 KKNIASWNAMLV 294
+I W +L
Sbjct: 651 DPDITMWKTLLA 662
>gi|302801247|ref|XP_002982380.1| hypothetical protein SELMODRAFT_447 [Selaginella moellendorffii]
gi|300149972|gb|EFJ16625.1| hypothetical protein SELMODRAFT_447 [Selaginella moellendorffii]
Length = 730
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 89/324 (27%), Positives = 149/324 (45%), Gaps = 13/324 (4%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCG---QLDTARQLF 69
Y L++ C + A + +HI + ++ N L+ M+ CG L AR +F
Sbjct: 1 YASLLRRCGISRSLADGRRVHDHILATGHFLRSVHLGNLLIQMYRKCGGTSSLADARAVF 60
Query: 70 DEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVC 129
D+MP +D SW+ +I Y +E I LF + M + M +IV L AC
Sbjct: 61 DQMPKKDVVSWSCIIAAYGQAGHCREAINLF-QRMDVEPNEM-------VIVSTLAACSG 112
Query: 130 TMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAK 189
++ LG +H + +++ + +L+N Y K +E A VF Q+ + V WTA
Sbjct: 113 AKDLALGMAIHARILSPDLRKSVFVGTALLNMYAKCGAIEQARAVFDQMPHKDVVSWTAM 172
Query: 190 IVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIG 249
I + G Q + M + R++ N TF + + AC + + GR++HA ++ +G
Sbjct: 173 ITAFAQMGDCRQALETLEGMIQARVQPNPVTFVAAITACSS-REFLDRGRKIHAAVIDLG 231
Query: 250 LESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFL 309
L D +Q LV MY K +A VF+ + D+ + SWN+M+ + + A
Sbjct: 232 LHGDITIQNALVSMYAKGSSAEEALSVFQRMEDRNRV-SWNSMIAAFAASAQSCSAMGLF 290
Query: 310 YLMKASGIQIQESLINDLRIACSS 333
+ M GI+ + + ACSS
Sbjct: 291 HGMNLEGIKPDDVSFLGVLSACSS 314
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 83/304 (27%), Positives = 138/304 (45%), Gaps = 10/304 (3%)
Query: 17 IKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRD 76
+ C+ KD A + I +++ ++ LL M+ CG ++ AR +FD+MP +D
Sbjct: 107 LAACSGAKDLALGMAIHARILSP-DLRKSVFVGTALLNMYAKCGAIEQARAVFDQMPHKD 165
Query: 77 FNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELG 136
SW MI + + D ++ + M++ + + F V + AC ++ G
Sbjct: 166 VVSWTAMITAFAQMGDCRQALETLEGMIQARVQPNPVTF-----VAAITACSSREFLDRG 220
Query: 137 KQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCRE 196
+++H + LG +I++ +L++ Y K E+A VF +++ N V W + I
Sbjct: 221 RKIHAAVIDLGLHGDITIQNALVSMYAKGSSAEEALSVFQRMEDRNRVSWNSMIAAFAAS 280
Query: 197 GHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLES--DE 254
F M E IK + +F VL AC +C R +H+ + + S D
Sbjct: 281 AQSCSAMGLFHGMNLEGIKPDDVSFLGVLSACSSTGCLRSCKR-IHSQLELAAVHSPPDL 339
Query: 255 YVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKA 314
V+ LV Y KC L AER+F+ I KN+ SW AML Y +G +A + M
Sbjct: 340 SVENSLVTAYAKCGDLEAAERIFQRI-PGKNVVSWTAMLTAYTFHGNGSKALELYDKMVG 398
Query: 315 SGIQ 318
IQ
Sbjct: 399 QSIQ 402
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 120/261 (45%), Gaps = 24/261 (9%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ CG L+ AR++FD + ++ SW M+ YV +E I LF+EM
Sbjct: 444 NALINMYARCGSLEEARRVFDGIERKNLVSWNAMMGSYVQHGYDEEAIALFSEMKTGNSK 503
Query: 110 HM---LLVFPAWIIVCVLKACVCTMN-MELGKQVHGLLFKL------GSSRNISLTGSLI 159
M L P I+ +L + + G+ +H L + GS+ N++L +L+
Sbjct: 504 AMESGLRSSPDCIMAVILLCAHAGLGKLAEGRCIHAELCAVNPEILAGSTTNVTLGNALV 563
Query: 160 NFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSY 219
+ Y + + DA F ++ +TV W++ + GH +++M E ++ +S
Sbjct: 564 SMYARCGSMGDASAAFHHMRARDTVTWSSLVAGYAHHGHAEYAILLYRDMHLEGVQPDSV 623
Query: 220 TFSSVLKACGGVDDDGNCGRQMHANIVKIGLESD-------EYVQCGLVDMYGKCRLLRD 272
T+ S+L +C + G A + + D ++ +C +VD+ G+ +
Sbjct: 624 TYVSILNSC------SHAGLLAQARHFFVSMVEDHCLAAWPDHWKC-MVDVLGRAGFVGR 676
Query: 273 AERVFELIVDKKNIASWNAML 293
AE V + + ++ +WN +L
Sbjct: 677 AEDVVRNMPFQPDVVAWNTLL 697
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 72/296 (24%), Positives = 133/296 (44%), Gaps = 26/296 (8%)
Query: 40 VNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITL 99
V+ P L N L+ + CG L+ A ++F +P ++ SW M+ Y + + + L
Sbjct: 333 VHSPPDLSVENSLVTAYAKCGDLEAAERIFQRIPGKNVVSWTAMLTAYTFHGNGSKALEL 392
Query: 100 FAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
+ +M+ + + P + +++ V+ A ++ L +++H + I + +L
Sbjct: 393 YDKMVGQS------IQPDSVVLLNVIYAGSLVGDVGLARKLHARVASSSFMLKIQIQNAL 446
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEM--GRERIKK 216
IN Y + LE+A VF ++R N V W A + + + G+ + F EM G + +
Sbjct: 447 INMYARCGSLEEARRVFDGIERKNLVSWNAMMGSYVQHGYDEEAIALFSEMKTGNSKAME 506
Query: 217 NSYTFSS-------VLKACGGVDDDGNCGRQMHANIVKIGLE----SDEYVQCG--LVDM 263
+ S +L A G+ GR +HA + + E S V G LV M
Sbjct: 507 SGLRSSPDCIMAVILLCAHAGLGKLAE-GRCIHAELCAVNPEILAGSTTNVTLGNALVSM 565
Query: 264 YGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYL-MKASGIQ 318
Y +C + DA F + + + +W++++ GY +G + E LY M G+Q
Sbjct: 566 YARCGSMGDASAAFHHMRARDTV-TWSSLVAGYAHHG-HAEYAILLYRDMHLEGVQ 619
>gi|297722397|ref|NP_001173562.1| Os03g0644100 [Oryza sativa Japonica Group]
gi|53749418|gb|AAU90276.1| PPR repeat containing protein [Oryza sativa Japonica Group]
gi|108710059|gb|ABF97854.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
gi|215707171|dbj|BAG93631.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255674740|dbj|BAH92290.1| Os03g0644100 [Oryza sativa Japonica Group]
Length = 616
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 82/289 (28%), Positives = 147/289 (50%), Gaps = 7/289 (2%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ CG++ A+ +FD MP R+ +W MI GY ++ I LF +M R+
Sbjct: 322 LVTMYARCGEVFDAQAVFDMMPRRNTITWTSMISGYAQSGHGEKAILLFRKMKMRR---- 377
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+ IV +L AC + LGK++H + K N+ + +L+ FY K A
Sbjct: 378 -VFVNNLTIVGLLSACGSLQSPYLGKELHAQIIKNSMEENLQIGSTLVWFYCKCGEYTYA 436
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
+ + + + WTA I GH + +M + +K N+YT+SS LKAC +
Sbjct: 437 ARILEAMPDRDAISWTALISGYNNLGHNVEALKSLDDMLWDGVKPNTYTYSSALKACAKL 496
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
+ GR++H + K S+ +V L+DMY +C + +A VF+ + + N+ +W
Sbjct: 497 EAL-QYGRKIHGFVNKTQDFSNVFVGSSLIDMYMRCGKVDEARSVFDAM-PEHNLVTWKV 554
Query: 292 MLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKIN 340
++ G+ +NGL EA K++YLM+ G ++ + +++ + +C + I+
Sbjct: 555 IITGFAQNGLCEEALKYMYLMQQEGHEVDDFVLSTVLTSCGDLQWKSIS 603
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 85/288 (29%), Positives = 145/288 (50%), Gaps = 8/288 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ + ++ AR++FDEMP R SW M+ Y+ + Y E + LF +M+
Sbjct: 119 NNLISAYARFDEVSDAREVFDEMPERSVVSWTAMMNVYLKLGHYGEVVRLFFDMVGSGVQ 178
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
L F VC+LK+C + +LG+QVH + K G S N+ + ++ +FY + +
Sbjct: 179 GNSLTF-----VCLLKSCGERCDAKLGQQVHCCIVKGGWS-NVIVDSAIAHFYAQCGDVA 232
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A +F ++ + + WT I + GH Q F EM E + N +T SVLKAC
Sbjct: 233 SASAIFDKMAYRDVISWTTMITAYVQHGHGGQALRMFSEMVSEGFRPNEFTVCSVLKAC- 291
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ G+Q+H ++K ++D ++ LV MY +C + DA+ VF+++ ++N +W
Sbjct: 292 AEEKAVRFGKQLHCAVLKKMYKNDIHIGSALVTMYARCGEVFDAQAVFDMM-PRRNTITW 350
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISAS 337
+M+ GY ++G +A MK + + I L AC S+ +
Sbjct: 351 TSMISGYAQSGHGEKAILLFRKMKMRRVFVNNLTIVGLLSACGSLQSP 398
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 86/282 (30%), Positives = 133/282 (47%), Gaps = 9/282 (3%)
Query: 56 HVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVF 115
+ CG + +A +FD+M RD SW MI YV + + +F+EM+
Sbjct: 225 YAQCGDVASASAIFDKMAYRDVISWTTMITAYVQHGHGGQALRMFSEMVSEG------FR 278
Query: 116 PAWIIVC-VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFV 174
P VC VLKAC + GKQ+H + K +I + +L+ Y + + DA V
Sbjct: 279 PNEFTVCSVLKACAEEKAVRFGKQLHCAVLKKMYKNDIHIGSALVTMYARCGEVFDAQAV 338
Query: 175 FSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDD 234
F + R NT+ WT+ I + GH + F++M R+ N+ T +L ACG +
Sbjct: 339 FDMMPRRNTITWTSMISGYAQSGHGEKAILLFRKMKMRRVFVNNLTIVGLLSACGSLQSP 398
Query: 235 GNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLV 294
G+++HA I+K +E + + LV Y KC A R+ E + D+ I SW A++
Sbjct: 399 -YLGKELHAQIIKNSMEENLQIGSTLVWFYCKCGEYTYAARILEAMPDRDAI-SWTALIS 456
Query: 295 GYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
GY G VEA K L M G++ + AC+ + A
Sbjct: 457 GYNNLGHNVEALKSLDDMLWDGVKPNTYTYSSALKACAKLEA 498
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 98/200 (49%), Gaps = 3/200 (1%)
Query: 137 KQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCRE 196
++VH + + S + +LI+ Y +F + DA VF ++ + V WTA + +
Sbjct: 100 RRVHAVAVRSLDSLGTFVANNLISAYARFDEVSDAREVFDEMPERSVVSWTAMMNVYLKL 159
Query: 197 GHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYV 256
GH+ +V F +M ++ NS TF +LK+C G D G+Q+H IVK G S+ V
Sbjct: 160 GHYGEVVRLFFDMVGSGVQGNSLTFVCLLKSC-GERCDAKLGQQVHCCIVKGGW-SNVIV 217
Query: 257 QCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASG 316
+ Y +C + A +F+ + +++ SW M+ Y+++G +A + M + G
Sbjct: 218 DSAIAHFYAQCGDVASASAIFDKMA-YRDVISWTTMITAYVQHGHGGQALRMFSEMVSEG 276
Query: 317 IQIQESLINDLRIACSSISA 336
+ E + + AC+ A
Sbjct: 277 FRPNEFTVCSVLKACAEEKA 296
>gi|357481283|ref|XP_003610927.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512262|gb|AES93885.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 802
Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 92/351 (26%), Positives = 161/351 (45%), Gaps = 30/351 (8%)
Query: 9 TTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQL 68
+ +Y+ LI C + + H K N P ++ NRL+ M+ CG L A+ L
Sbjct: 62 SPRLYSTLIAACLRHRKLELGKRVHAHT-KASNFIPGIVISNRLIHMYAKCGSLVDAQML 120
Query: 69 FDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR-------------KKGHMLLVF 115
FDE+P +D SW MI GY +V ++ LF EM R +G +
Sbjct: 121 FDEIPQKDLCSWNTMISGYANVGRIEQARKLFDEMPHRDNFSWNAVISGYVSQGWYMEAL 180
Query: 116 PAWIIVCVLKACVCTM--------------NMELGKQVHGLLFKLGSSRNISLTGSLINF 161
+ ++ ++ C M ++ GK++HG L + G + + +L++
Sbjct: 181 DLFRMMQENESSNCNMFTLSSALAAAAAISSLRRGKEIHGYLIRSGLELDEVVWTALLDL 240
Query: 162 YGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTF 221
YGK L +A +F Q+ + V WT I +G + F+ F+++ ++ N YTF
Sbjct: 241 YGKCGSLNEARGIFDQMADKDIVSWTTMIHRCFEDGRKKEGFSLFRDLMGSGVRPNEYTF 300
Query: 222 SSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIV 281
+ VL AC + + G+++H + ++G + + LV +Y KC A RVF +
Sbjct: 301 AGVLNACADLAAE-QMGKEVHGYMTRVGYDPFSFAASALVHVYSKCGNTETARRVFNQM- 358
Query: 282 DKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+ ++ SW +++VGY +NG A +F + SG + E + AC+
Sbjct: 359 PRPDLVSWTSLIVGYAQNGQPDMALQFFESLLRSGTKPDEITFVGVLSACT 409
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/286 (22%), Positives = 119/286 (41%), Gaps = 44/286 (15%)
Query: 93 YQECITLFAEMMKRKKG----HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGS 148
++E I LF + + K+ H + + ++ AC+ +ELGK+VH
Sbjct: 35 FEEIIELFCQQNRLKEAVDYLHRIPQPSPRLYSTLIAACLRHRKLELGKRVHAHTKASNF 94
Query: 149 SRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKE 208
I ++ LI+ Y K L DA +F ++ + + W I G Q F E
Sbjct: 95 IPGIVISNRLIHMYAKCGSLVDAQMLFDEIPQKDLCSWNTMISGYANVGRIEQARKLFDE 154
Query: 209 MGRERIKKNSYTFSSVLKACGGV---------------DDDGNC---------------- 237
M ++++++++V+ ++ NC
Sbjct: 155 MPH----RDNFSWNAVISGYVSQGWYMEALDLFRMMQENESSNCNMFTLSSALAAAAAIS 210
Query: 238 ----GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
G+++H +++ GLE DE V L+D+YGKC L +A +F+ + DK +I SW M+
Sbjct: 211 SLRRGKEIHGYLIRSGLELDEVVWTALLDLYGKCGSLNEARGIFDQMADK-DIVSWTTMI 269
Query: 294 VGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKI 339
+G E + SG++ E + AC+ ++A ++
Sbjct: 270 HRCFEDGRKKEGFSLFRDLMGSGVRPNEYTFAGVLNACADLAAEQM 315
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 74/164 (45%), Gaps = 18/164 (10%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
RV P + L+ ++ CG +TAR++F++MP D SW +IVGY +
Sbjct: 325 RVGYDPFSFAASALVHVYSKCGNTETARRVFNQMPRPDLVSWTSLIVGYAQNGQPDMALQ 384
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELG-------KQVHGLLFKLGSSRN 151
F +++ + F V VL AC +++G K+ HGL+ ++ +
Sbjct: 385 FFESLLRSGTKPDEITF-----VGVLSACTHAGLVDIGLEYFHSVKEKHGLVH---TADH 436
Query: 152 ISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCR 195
+ L+ G+F+ E + + + + + +W A ++ CR
Sbjct: 437 YACVIDLLARSGRFK--EAENIIDNMPMKPDKFLW-ASLLGGCR 477
>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
Length = 771
Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 80/284 (28%), Positives = 139/284 (48%), Gaps = 9/284 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ CG + A+ +FD++P ++ +W ++I GY + L +M + +
Sbjct: 238 LVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAE---- 293
Query: 112 LLVFPAWII-VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
V P I +L+ C + +E GK+VH + + G R I + +LI Y K L++
Sbjct: 294 --VAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWVVNALITMYCKCGGLKE 351
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
A +F L + V WTA + + G + + F+ M ++ IK + TF+S L +C
Sbjct: 352 ARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSS 411
Query: 231 VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWN 290
G+ +H +V G D Y+Q LV MY KC + DA VF + ++N+ +W
Sbjct: 412 PAFLQE-GKSIHQQLVHAGYSLDVYLQSALVSMYAKCGSMDDARLVFNQM-SERNVVAWT 469
Query: 291 AMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
AM+ G ++G EA ++ MK GI+ + + AC+ +
Sbjct: 470 AMITGCAQHGRCREALEYFEQMKKQGIKPDKVTFTSVLSACTHV 513
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 124/248 (50%), Gaps = 11/248 (4%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
+N L+ M+ CG L AR+LF ++P RD +W M+ GY + + E I LF M ++
Sbjct: 336 VNALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGI 395
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+ F + L +C ++ GK +H L G S ++ L +L++ Y K +
Sbjct: 396 KPDKMTFTS-----ALTSCSSPAFLQEGKSIHQQLVHAGYSLDVYLQSALVSMYAKCGSM 450
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+DA VF+Q+ N V WTA I + G + F++M ++ IK + TF+SVL AC
Sbjct: 451 DDARLVFNQMSERNVVAWTAMITGCAQHGRCREALEYFEQMKKQGIKPDKVTFTSVLSAC 510
Query: 229 G--GVDDDGNCGRQMHANIVKIGLES-DEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
G+ ++G + + + G++ E+ C VD+ G+ L +AE V + +
Sbjct: 511 THVGLVEEGR--KHFRSMYLDYGIKPMVEHYSC-FVDLLGRAGHLEEAENVILTMPFQPG 567
Query: 286 IASWNAML 293
+ W A+L
Sbjct: 568 PSVWGALL 575
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 83/328 (25%), Positives = 147/328 (44%), Gaps = 8/328 (2%)
Query: 8 ITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQ 67
+ +D++ L++EC + E+ I K I+P N LL M+ CG L AR+
Sbjct: 94 VYSDVFRGLLQECARLRSLEQGREVHAAILKS-GIQPNRYLENTLLSMYAKCGSLTDARR 152
Query: 68 LFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKAC 127
+FD + R+ SW MI +V E + M + F V +L A
Sbjct: 153 VFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPDKVTF-----VSLLNAF 207
Query: 128 VCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWT 187
+++G++VH + K G + SL+ Y K + A +F +L N V WT
Sbjct: 208 TNPELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWT 267
Query: 188 AKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVK 247
I ++G ++M + + N T++S+L+ C G+++H I++
Sbjct: 268 LLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGC-TTPLALEHGKKVHRYIIQ 326
Query: 248 IGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATK 307
G + +V L+ MY KC L++A ++F + +++ +W AM+ GY + G + EA
Sbjct: 327 SGYGREIWVVNALITMYCKCGGLKEARKLFGDL-PHRDVVTWTAMVTGYAQLGFHDEAID 385
Query: 308 FLYLMKASGIQIQESLINDLRIACSSIS 335
M+ GI+ + +CSS +
Sbjct: 386 LFRRMQQQGIKPDKMTFTSALTSCSSPA 413
>gi|225436291|ref|XP_002269762.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Vitis vinifera]
Length = 906
Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 82/258 (31%), Positives = 136/258 (52%), Gaps = 3/258 (1%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+V+ G + AR+LFDEMP R SW +++ GY E + +F +M+ G LL
Sbjct: 1 MYVNAGAMQEARKLFDEMPERSLVSWTIVMSGYARHGPASEVLMMFWDMLCGSGGG-LLR 59
Query: 115 FPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFV 174
+++ VL+AC + G+ VHGL+ K S + + +L++ YG LEDA V
Sbjct: 60 PDSFVFAVVLRACGMVECLSYGRGVHGLVVKQSSVVDSFVENALVSMYGSCGALEDAAVV 119
Query: 175 FSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDD 234
F + + + V W++ + + G + F +M I+ +++ FS VL AC + +
Sbjct: 120 FGGIDKPDLVGWSSILSGYVKNGLEEEGLRIFCDMVSGGIEPDAFAFSMVLGACTNL-EC 178
Query: 235 GNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLV 294
+ G Q H I+K+G +S Y++ L+D Y KC L RVF + +KN+ SWN +
Sbjct: 179 WDFGTQAHCYIIKMGFDSCLYLENSLMDFYAKCGDLEGMRRVFSHM-SEKNLVSWNTFIN 237
Query: 295 GYIRNGLYVEATKFLYLM 312
GY+ N Y+EA + ++
Sbjct: 238 GYVHNFHYLEALRIFQIL 255
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/293 (25%), Positives = 139/293 (47%), Gaps = 33/293 (11%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
++ L N L+ + CG L+ R++F M ++ SW I GYV Y E +
Sbjct: 191 KMGFDSCLYLENSLMDFYAKCGDLEGMRRVFSHMSEKNLVSWNTFINGYVHNFHYLEALR 250
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
+F +M+ + + ++ +LKA +++ GK++HG + + G N + SL
Sbjct: 251 IFQILMEE-----VSQCDDFSLLSILKAVSGLGHLDHGKEIHGYILRAGIETNRYVVSSL 305
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
++ Y C+ D + ++ +++ K++N G + +
Sbjct: 306 LDMY--IGCI-DHESLYPRVEV------PLKLLNYLEGGGY-----------------DE 339
Query: 219 YTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE 278
+ +S+LK C ++ G+ H+ I+K+ L+SD YV L+DMY KC + A+RVF
Sbjct: 340 FIMTSLLKWCS-LESSLESGKMFHSLIIKLDLKSDSYVLSSLIDMYSKCGIWEAAKRVFT 398
Query: 279 LIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
V++ + A W+A++ G+ NG + EA K M+ GI+ E + +AC
Sbjct: 399 R-VEQPDTAPWSALISGHSWNGCFAEALKLFRKMQFDGIKANEFTFTSVILAC 450
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 105/219 (47%), Gaps = 8/219 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ SCG L+ A +F + D W+ ++ GYV +E + +F +M+
Sbjct: 101 NALVSMYGSCGALEDAAVVFGGIDKPDLVGWSSILSGYVKNGLEEEGLRIFCDMVSGG-- 158
Query: 110 HMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+ P A+ VL AC + G Q H + K+G + L SL++FY K L
Sbjct: 159 ----IEPDAFAFSMVLGACTNLECWDFGTQAHCYIIKMGFDSCLYLENSLMDFYAKCGDL 214
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
E VFS + N V W I H+ + F+ + E + + ++ S+LKA
Sbjct: 215 EGMRRVFSHMSEKNLVSWNTFINGYVHNFHYLEALRIFQILMEEVSQCDDFSLLSILKAV 274
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKC 267
G+ + G+++H I++ G+E++ YV L+DMY C
Sbjct: 275 SGLGHLDH-GKEIHGYILRAGIETNRYVVSSLLDMYIGC 312
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 112/219 (51%), Gaps = 3/219 (1%)
Query: 115 FPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFV 174
+ +I+ +LK C ++E GK H L+ KL + + SLI+ Y K E A V
Sbjct: 337 YDEFIMTSLLKWCSLESSLESGKMFHSLIIKLDLKSDSYVLSSLIDMYSKCGIWEAAKRV 396
Query: 175 FSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDD 234
F+++++ +T W+A I + G F + F++M + IK N +TF+SV+ AC +++
Sbjct: 397 FTRVEQPDTAPWSALISGHSWNGCFAEALKLFRKMQFDGIKANEFTFTSVILACLALENL 456
Query: 235 GNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLV 294
G+++H I++ G ES+ V L+++Y + + A ++ +I D + SWN ++
Sbjct: 457 RK-GKELHCKILRSGYESNFSVVNTLINLYSELWQHKQALKLCSMIPDSE--ISWNFLIR 513
Query: 295 GYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSS 333
+ Y K L+ ++ S + D+ +CSS
Sbjct: 514 ACLGAEDYEIIHKLLWRIQVSHGNLDPVSACDIFASCSS 552
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 90/174 (51%), Gaps = 12/174 (6%)
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEM----GRERIKKNSYTFSS 223
+++A +F ++ + V WT + R G +V F +M G ++ +S+ F+
Sbjct: 8 MQEARKLFDEMPERSLVSWTIVMSGYARHGPASEVLMMFWDMLCGSGGGLLRPDSFVFAV 67
Query: 224 VLKACGGVDDDGNC---GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELI 280
VL+ACG V+ C GR +H +VK D +V+ LV MYG C L DA VF I
Sbjct: 68 VLRACGMVE----CLSYGRGVHGLVVKQSSVVDSFVENALVSMYGSCGALEDAAVVFGGI 123
Query: 281 VDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
DK ++ W+++L GY++NGL E + M + GI+ + + AC+++
Sbjct: 124 -DKPDLVGWSSILSGYVKNGLEEEGLRIFCDMVSGGIEPDAFAFSMVLGACTNL 176
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 70/323 (21%), Positives = 140/323 (43%), Gaps = 13/323 (4%)
Query: 14 TCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMP 73
T L+K C+ + S + ++ + + ++++K L+ L+ M+ CG + A+++F +
Sbjct: 343 TSLLKWCSLES-SLESGKMFHSLIIKLDLKSDSYVLSSLIDMYSKCGIWEAAKRVFTRVE 401
Query: 74 LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNM 133
D W+ +I G+ + E + LF +M F + V+ AC+ N+
Sbjct: 402 QPDTAPWSALISGHSWNGCFAEALKLFRKMQFDGIKANEFTFTS-----VILACLALENL 456
Query: 134 ELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNN 193
GK++H + + G N S+ +LIN Y + + A + S + + + W ++
Sbjct: 457 RKGKELHCKILRSGYESNFSVVNTLINLYSELWQHKQALKLCSMIPD-SEISWNF-LIRA 514
Query: 194 CREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDG--NCGRQMHANIVKIGLE 251
C +++ + K + R ++ + S N G Q HA + K GL
Sbjct: 515 CLGAEDYEIIH--KLLWRIQVSHGNLDPVSACDIFASCSSPVLLNVGTQAHAYMTKRGLI 572
Query: 252 SDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYL 311
S + L+ MY C +A + F L+ +K+ SW ++L + +G EA +
Sbjct: 573 SHPTISNSLIQMYSACGKFDEAVQAFNLM-PEKDTCSWTSILSARVEHGHPSEALNLISQ 631
Query: 312 MKASGIQIQESLINDLRIACSSI 334
M+ +S + AC+ +
Sbjct: 632 MRWKNKPADQSTFRSVLNACAQM 654
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/236 (21%), Positives = 96/236 (40%), Gaps = 10/236 (4%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R + +N L+ ++ Q A +L +P + SW +I + DY E I
Sbjct: 468 RSGYESNFSVVNTLINLYSELWQHKQALKLCSMIPDSEI-SWNFLIRACLGAEDY-EIIH 525
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVC-VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGS 157
++ G++ V C + +C + + +G Q H + K G + +++ S
Sbjct: 526 KLLWRIQVSHGNLDPV-----SACDIFASCSSPVLLNVGTQAHAYMTKRGLISHPTISNS 580
Query: 158 LINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKN 217
LI Y ++A F+ + +T WT+ + GH + N +M + +
Sbjct: 581 LIQMYSACGKFDEAVQAFNLMPEKDTCSWTSILSARVEHGHPSEALNLISQMRWKNKPAD 640
Query: 218 SYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLES-DEYVQCGLVDMYGKCRLLRD 272
TF SVL AC + R + G+E +E+ C +V++ G+ + +
Sbjct: 641 QSTFRSVLNACAQMGLVDEAFRLFFSMKEVYGIEPLEEHYSC-MVEVLGRAGMFEE 695
>gi|302756319|ref|XP_002961583.1| hypothetical protein SELMODRAFT_76916 [Selaginella moellendorffii]
gi|300170242|gb|EFJ36843.1| hypothetical protein SELMODRAFT_76916 [Selaginella moellendorffii]
Length = 493
Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 83/284 (29%), Positives = 139/284 (48%), Gaps = 8/284 (2%)
Query: 52 LLLMHVSC-GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGH 110
LL M+ C G AR +FD M +RD SW ++V Y A +E + L+ +M+ +
Sbjct: 99 LLNMYGRCSGDARAARAVFDGMEVRDLVSWNAIVVVYSQKAQCEEAVKLYRQMLLQAALE 158
Query: 111 MLLVFPAWII-------VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYG 163
+L + A + V+ C +E G+++H + K G ++++ +L+N YG
Sbjct: 159 VLEIMRAQRVELDRVGYTSVIDTCTSLGALEEGRRIHSQIAKQGLETDVAVGSALVNMYG 218
Query: 164 KFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSS 223
K LEDA VF+ ++ + WT+ + + G + F F+ M E K + T S
Sbjct: 219 KCGDLEDARAVFAGIEGKDRCAWTSMLGAYAQHGDGDRAFQVFQTMDLEGEKSDPITLIS 278
Query: 224 VLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
VL C + G+ +H++I GLE D V L+DMY C LR A F+ I K
Sbjct: 279 VLSVCSDKSSALSQGKAIHSSISGSGLELDGLVATALIDMYATCGSLRTARNFFDAIQAK 338
Query: 284 KNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDL 327
++ W+A++ GY ++G + E+T LM+ G++ I +
Sbjct: 339 GDVVLWSAIISGYSQHGDWEESTTLFRLMQLEGLEPDNRTITSV 382
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/265 (26%), Positives = 130/265 (49%), Gaps = 32/265 (12%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+ CG++D AR++F+ + R+ SW +MI Y ++ +F ++ + V
Sbjct: 1 MYGKCGKVDEARRVFEAILDRNVFSWNLMIAAYARHGHSRDAWEVF------RRIDLEGV 54
Query: 115 FPAWII-VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED--- 170
P+ + + VL +C + G ++H + + G ++ +L+N YG RC D
Sbjct: 55 KPSRVTFLGVLDSCNGARGLAAGLEIHARMVEGGFESDVVACTALLNMYG--RCSGDARA 112
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKE------------MGRERIKKNS 218
A VF ++ + V W A +V ++ + +++ M +R++ +
Sbjct: 113 ARAVFDGMEVRDLVSWNAIVVVYSQKAQCEEAVKLYRQMLLQAALEVLEIMRAQRVELDR 172
Query: 219 YTFSSVLKAC---GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAER 275
++SV+ C G +++ GR++H+ I K GLE+D V LV+MYGKC L DA
Sbjct: 173 VGYTSVIDTCTSLGALEE----GRRIHSQIAKQGLETDVAVGSALVNMYGKCGDLEDARA 228
Query: 276 VFELIVDKKNIASWNAMLVGYIRNG 300
VF I + K+ +W +ML Y ++G
Sbjct: 229 VFAGI-EGKDRCAWTSMLGAYAQHG 252
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 84/188 (44%), Gaps = 13/188 (6%)
Query: 161 FYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYT 220
YGK +++A VF + N W I R GH + F+ + E +K + T
Sbjct: 1 MYGKCGKVDEARRVFEAILDRNVFSWNLMIAAYARHGHSRDAWEVFRRIDLEGVKPSRVT 60
Query: 221 FSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELI 280
F VL +C G G ++HA +V+ G ESD L++MYG+C A R
Sbjct: 61 FLGVLDSCNGARGLA-AGLEIHARMVEGGFESDVVACTALLNMYGRCSGDARAARAVFDG 119
Query: 281 VDKKNIASWNAMLVGYIRNGLYVEATKF------------LYLMKASGIQIQESLINDLR 328
++ +++ SWNA++V Y + EA K L +M+A +++ +
Sbjct: 120 MEVRDLVSWNAIVVVYSQKAQCEEAVKLYRQMLLQAALEVLEIMRAQRVELDRVGYTSVI 179
Query: 329 IACSSISA 336
C+S+ A
Sbjct: 180 DTCTSLGA 187
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 70/289 (24%), Positives = 126/289 (43%), Gaps = 20/289 (6%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRV---NIKPTLLFLNRLLLMHVSCGQLDTARQLF 69
YT +I CT S GA E I ++ ++ + + L+ M+ CG L+ AR +F
Sbjct: 175 YTSVIDTCT----SLGALEEGRRIHSQIAKQGLETDVAVGSALVNMYGKCGDLEDARAVF 230
Query: 70 DEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVC 129
+ +D +W M+ Y D +F M + + + + VC K+
Sbjct: 231 AGIEGKDRCAWTSMLGAYAQHGDGDRAFQVFQTMDLEGEKSDPITLISVLSVCSDKSSA- 289
Query: 130 TMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK-RHNTVVWTA 188
+ GK +H + G + + +LI+ Y L A F ++ + + V+W+A
Sbjct: 290 ---LSQGKAIHSSISGSGLELDGLVATALIDMYATCGSLRTARNFFDAIQAKGDVVLWSA 346
Query: 189 KIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--GGVDDDGN--CGRQMHAN 244
I + G + + F+ M E ++ ++ T +SVL A GG+ D G + A
Sbjct: 347 IISGYSQHGDWEESTTLFRLMQLEGLEPDNRTITSVLSAFSHGGLVDQATEWFGTMVEAC 406
Query: 245 IVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
+K + D Y+ C L+D+ G+ L AE V + + K + +W +L
Sbjct: 407 DMKPAI--DHYM-C-LIDLLGRAGCLEAAELVMKRMPCKADTVAWTTLL 451
>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
mitochondrial-like [Vitis vinifera]
Length = 735
Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 101/340 (29%), Positives = 159/340 (46%), Gaps = 15/340 (4%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRV-NIKPTLLFLNRLLLMHVSC 59
M L L + C IK C+ D + H + + +P L + L+ M+ C
Sbjct: 143 MRKLSLKPNRSTFPCAIKSCSALLDLHSGRQA--HQQALIFGFEPDLFVSSALVDMYSKC 200
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGH----MLLVF 115
G+L AR LFDE+ R+ SW MI GYV D + LF E + + G + V
Sbjct: 201 GELRDARTLFDEISHRNIVSWTSMITGYVQNDDAHRALLLFKEFLVEESGSEGDGEVCVD 260
Query: 116 PAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVF 175
P +V VL AC + + VHG L K G ++ + +L++ Y K L + VF
Sbjct: 261 PI-AMVSVLSACSRVSEKSITEGVHGFLIKRGFEGDLGVENTLMDAYAKCGELGVSRRVF 319
Query: 176 SQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRE-RIKKNSYTFSSVLKACG--GVD 232
+ + + W + I + G + F M ++ I N+ T S+VL AC G
Sbjct: 320 DGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQ 379
Query: 233 DDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAM 292
G C +H ++K+GLES+ +V ++DMY KC + A + F+ + +KN+ SW+AM
Sbjct: 380 RLGKC---IHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRM-REKNVKSWSAM 435
Query: 293 LVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+ GY +G EA + Y M +G++ + ACS
Sbjct: 436 VAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACS 475
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 70/248 (28%), Positives = 120/248 (48%), Gaps = 12/248 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ + CG+L +R++FD M RD SW +I Y E + +F M+K +
Sbjct: 300 NTLMDAYAKCGELGVSRRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGE- 358
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ + A + VL AC + + LGK +H + K+G N+ + S+I+ Y K +E
Sbjct: 359 ---INYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVE 415
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC- 228
A F +++ N W+A + GH + F EM +K N TF SVL AC
Sbjct: 416 MARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACS 475
Query: 229 --GGVDDDGNCGRQM-HANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
G +++ + + M H V+ G+ E+ C +VD+ G+ L++A + + + + +
Sbjct: 476 HAGLLEEGWHWFKAMSHEFDVEPGV---EHYGC-MVDLLGRAGYLKEAFDLIKGMKLRPD 531
Query: 286 IASWNAML 293
W A+L
Sbjct: 532 FVVWGALL 539
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 68/136 (50%), Gaps = 5/136 (3%)
Query: 178 LKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC 237
+ + N W + I R G + F M + +K N TF +K+C + D +
Sbjct: 112 VDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDL-HS 170
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYI 297
GRQ H + G E D +V LVDMY KC LRDA +F+ I +NI SW +M+ GY+
Sbjct: 171 GRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEI-SHRNIVSWTSMITGYV 229
Query: 298 RNGLYVEATKFLYLMK 313
+N +A + L L K
Sbjct: 230 QND---DAHRALLLFK 242
>gi|125587253|gb|EAZ27917.1| hypothetical protein OsJ_11878 [Oryza sativa Japonica Group]
Length = 583
Score = 137 bits (344), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 82/289 (28%), Positives = 147/289 (50%), Gaps = 7/289 (2%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ CG++ A+ +FD MP R+ +W MI GY ++ I LF +M R+
Sbjct: 289 LVTMYARCGEVFDAQAVFDMMPRRNTITWTSMISGYAQSGHGEKAILLFRKMKMRR---- 344
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+ IV +L AC + LGK++H + K N+ + +L+ FY K A
Sbjct: 345 -VFVNNLTIVGLLSACGSLQSPYLGKELHAQIIKNSMEENLQIGSTLVWFYCKCGEYTYA 403
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
+ + + + WTA I GH + +M + +K N+YT+SS LKAC +
Sbjct: 404 ARILEAMPDRDAISWTALISGYNNLGHNVEALKSLDDMLWDGVKPNTYTYSSALKACAKL 463
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
+ GR++H + K S+ +V L+DMY +C + +A VF+ + + N+ +W
Sbjct: 464 EAL-QYGRKIHGFVNKTQDFSNVFVGSSLIDMYMRCGKVDEARSVFDAM-PEHNLVTWKV 521
Query: 292 MLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKIN 340
++ G+ +NGL EA K++YLM+ G ++ + +++ + +C + I+
Sbjct: 522 IITGFAQNGLCEEALKYMYLMQQEGHEVDDFVLSTVLTSCGDLQWKSIS 570
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 85/287 (29%), Positives = 145/287 (50%), Gaps = 8/287 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ + ++ AR++FDEMP R SW M+ Y+ + Y E + LF +M+
Sbjct: 86 NNLISAYARFDEVSDAREVFDEMPERSVVSWTAMMNVYLKLGHYGEVVRLFFDMVGSGVQ 145
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
L F VC+LK+C + +LG+QVH + K G S N+ + ++ +FY + +
Sbjct: 146 GNSLTF-----VCLLKSCGERCDAKLGQQVHCCIVKGGWS-NVIVDSAIAHFYAQCGDVA 199
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A +F ++ + + WT I + GH Q F EM E + N +T SVLKAC
Sbjct: 200 SASAIFDKMAYRDVISWTTMITAYVQHGHGGQALRMFSEMVSEGFRPNEFTVCSVLKAC- 258
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ G+Q+H ++K ++D ++ LV MY +C + DA+ VF+++ ++N +W
Sbjct: 259 AEEKAVRFGKQLHCAVLKKMYKNDIHIGSALVTMYARCGEVFDAQAVFDMM-PRRNTITW 317
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+M+ GY ++G +A MK + + I L AC S+ +
Sbjct: 318 TSMISGYAQSGHGEKAILLFRKMKMRRVFVNNLTIVGLLSACGSLQS 364
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 86/282 (30%), Positives = 133/282 (47%), Gaps = 9/282 (3%)
Query: 56 HVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVF 115
+ CG + +A +FD+M RD SW MI YV + + +F+EM+
Sbjct: 192 YAQCGDVASASAIFDKMAYRDVISWTTMITAYVQHGHGGQALRMFSEMVSEG------FR 245
Query: 116 PAWIIVC-VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFV 174
P VC VLKAC + GKQ+H + K +I + +L+ Y + + DA V
Sbjct: 246 PNEFTVCSVLKACAEEKAVRFGKQLHCAVLKKMYKNDIHIGSALVTMYARCGEVFDAQAV 305
Query: 175 FSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDD 234
F + R NT+ WT+ I + GH + F++M R+ N+ T +L ACG +
Sbjct: 306 FDMMPRRNTITWTSMISGYAQSGHGEKAILLFRKMKMRRVFVNNLTIVGLLSACGSLQSP 365
Query: 235 GNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLV 294
G+++HA I+K +E + + LV Y KC A R+ E + D+ I SW A++
Sbjct: 366 -YLGKELHAQIIKNSMEENLQIGSTLVWFYCKCGEYTYAARILEAMPDRDAI-SWTALIS 423
Query: 295 GYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
GY G VEA K L M G++ + AC+ + A
Sbjct: 424 GYNNLGHNVEALKSLDDMLWDGVKPNTYTYSSALKACAKLEA 465
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 98/200 (49%), Gaps = 3/200 (1%)
Query: 137 KQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCRE 196
++VH + + S + +LI+ Y +F + DA VF ++ + V WTA + +
Sbjct: 67 RRVHAVAVRSLDSLGTFVANNLISAYARFDEVSDAREVFDEMPERSVVSWTAMMNVYLKL 126
Query: 197 GHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYV 256
GH+ +V F +M ++ NS TF +LK+C G D G+Q+H IVK G S+ V
Sbjct: 127 GHYGEVVRLFFDMVGSGVQGNSLTFVCLLKSC-GERCDAKLGQQVHCCIVKGGW-SNVIV 184
Query: 257 QCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASG 316
+ Y +C + A +F+ + +++ SW M+ Y+++G +A + M + G
Sbjct: 185 DSAIAHFYAQCGDVASASAIFDKMA-YRDVISWTTMITAYVQHGHGGQALRMFSEMVSEG 243
Query: 317 IQIQESLINDLRIACSSISA 336
+ E + + AC+ A
Sbjct: 244 FRPNEFTVCSVLKACAEEKA 263
>gi|297743367|emb|CBI36234.3| unnamed protein product [Vitis vinifera]
Length = 906
Score = 137 bits (344), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 107/338 (31%), Positives = 164/338 (48%), Gaps = 17/338 (5%)
Query: 4 LCLPITTDMYT--CLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQ 61
L + I D+YT C+++ C D A E+ H+ R + + +N L+ M+V CG
Sbjct: 187 LWVGIRPDVYTFPCVLRTCGGLPDLARGREVHLHV-IRYGFESDVDVVNALITMYVKCGD 245
Query: 62 LDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI-I 120
+ +AR +FD MP RD SW MI GY + E + LF M + V P + +
Sbjct: 246 IFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMRE------FFVDPDLMTM 299
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
V+ AC + LG++VHG + K G +S+ SLI + C ++A+ VFS+++
Sbjct: 300 TSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEF 359
Query: 181 HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDG--NCG 238
+ V WTA I + G + + M E + + T +SVL AC G+ G + G
Sbjct: 360 KDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGL---GLLDKG 416
Query: 239 RQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIR 298
+H + GL S V L+DMY KCR + A VF I + KN+ SW ++++G
Sbjct: 417 IMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPN-KNVISWTSIILGLRL 475
Query: 299 NGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
N EA F M S +L++ L AC+ I A
Sbjct: 476 NYRSFEALFFFQQMILSLKPNSVTLVSVLS-ACARIGA 512
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 88/339 (25%), Positives = 159/339 (46%), Gaps = 18/339 (5%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCG 60
M L + + + Y L++ C +++ ++ + +++ K V + + N LL M V G
Sbjct: 85 MQELQVSVEEETYIALLRLCEWKRAASEGSRVHSYVSKTVT-RLGVRLGNALLSMFVRFG 143
Query: 61 QLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWII 120
L A +F +M RD SW V++ GY + E + L+ M+ + FP
Sbjct: 144 DLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFP---- 199
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
CVL+ C ++ G++VH + + G ++ + +LI Y K + A VF ++ R
Sbjct: 200 -CVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPR 258
Query: 181 HNTVVWTAKIV-----NNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDG 235
+ + W A I + C EG F M + + T +SV+ AC + D+
Sbjct: 259 RDRISWNAMISGYFENDVCLEG-----LRLFFMMREFFVDPDLMTMTSVISACEALGDE- 312
Query: 236 NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
GR++H ++K G ++ V L+ M+ +AE VF + + K++ SW AM+ G
Sbjct: 313 RLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKM-EFKDLVSWTAMISG 371
Query: 296 YIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
Y +NGL +A + +M+ G+ E I + AC+ +
Sbjct: 372 YEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGL 410
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 88/286 (30%), Positives = 137/286 (47%), Gaps = 15/286 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ MH S G D A +F +M +D SW MI GY ++ + + M
Sbjct: 335 NSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIM-----E 389
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
H +V I VL AC ++ G +H + G + + + SLI+ Y K RC++
Sbjct: 390 HEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCID 449
Query: 170 DADFVFSQLKRHNTVVWTAKIVN---NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
A VF ++ N + WT+ I+ N R F +F F++M +K NS T SVL
Sbjct: 450 KALEVFHRIPNKNVISWTSIILGLRLNYRS--FEALFF-FQQMILS-LKPNSVTLVSVLS 505
Query: 227 ACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
AC + +CG+++HA+ ++ GL D ++ L+DMY +C + A F +K++
Sbjct: 506 ACARIGA-LSCGKEIHAHALRTGLGFDGFLPNALLDMYVRCGRMEPAWNQFNSC--EKDV 562
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
ASWN +L GY + G A + + M S + E L ACS
Sbjct: 563 ASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCACS 608
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 108/219 (49%), Gaps = 2/219 (0%)
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
+ +L+ C G +VH + K + + L +L++ + +F L +A +VF ++
Sbjct: 98 IALLRLCEWKRAASEGSRVHSYVSKTVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKMAE 157
Query: 181 HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQ 240
+ W + + G+F + N + M I+ + YTF VL+ CGG+ D GR+
Sbjct: 158 RDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLAR-GRE 216
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
+H ++++ G ESD V L+ MY KC + A VF+ + + I SWNAM+ GY N
Sbjct: 217 VHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRI-SWNAMISGYFEND 275
Query: 301 LYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKI 339
+ +E + ++M+ + + + AC ++ ++
Sbjct: 276 VCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERL 314
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/264 (21%), Positives = 111/264 (42%), Gaps = 11/264 (4%)
Query: 32 LLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVA 91
+L+ R + ++ N L+ M+ C +D A ++F +P ++ SW +I+G
Sbjct: 418 MLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNY 477
Query: 92 DYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRN 151
E + F +M+ K + + +V VL AC + GK++H + G +
Sbjct: 478 RSFEALFFFQQMILSLKPNSV------TLVSVLSACARIGALSCGKEIHAHALRTGLGFD 531
Query: 152 ISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGR 211
L +L++ Y + +E A F+ ++ + W + ++G F +M
Sbjct: 532 GFLPNALLDMYVRCGRMEPAWNQFNSCEK-DVASWNILLTGYAQQGKGGLAVELFHKMIE 590
Query: 212 ERIKKNSYTFSSVLKACG--GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRL 269
+ + TF+S+L AC G+ DG + + I Y +VD+ G+
Sbjct: 591 SDVNPDEITFTSLLCACSRSGMVTDGLEYFESMEHKFHIAPNLKHYAS--VVDLLGRAGR 648
Query: 270 LRDAERVFELIVDKKNIASWNAML 293
L DA + + + A W A+L
Sbjct: 649 LEDAYEFIKKMPIDPDPAIWGALL 672
>gi|222641140|gb|EEE69272.1| hypothetical protein OsJ_28537 [Oryza sativa Japonica Group]
Length = 784
Score = 137 bits (344), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 82/290 (28%), Positives = 146/290 (50%), Gaps = 8/290 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEM-PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
N L+ M+ G +D AR++FDE R+ SW ++ YV + I +F EM+
Sbjct: 46 NALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGI 105
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
F CV+ AC + N++ G+QVH ++ ++G +++ +L++ Y K +
Sbjct: 106 QPTEFGFS-----CVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRV 160
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+ A +F ++ + V W A I GH H+ +M + N + SS+LKAC
Sbjct: 161 DIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKAC 220
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
G + GRQ+H ++K +SD+Y+ GLVDMY K L DA +VF+ + +++
Sbjct: 221 AGA-GAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWM-SHRDLIL 278
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASK 338
WNA++ G G + EA Y ++ G+ + + + + + +S+ A+
Sbjct: 279 WNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAAS 328
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 92/325 (28%), Positives = 161/325 (49%), Gaps = 10/325 (3%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
++C++ CT ++ A ++ + R+ + + N L+ M+V G++D A +F++M
Sbjct: 112 FSCVVNACTGSRN-IDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKM 170
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN 132
P D SW +I G V I L +M + G LV +++ +LKAC
Sbjct: 171 PDSDVVSWNALISGCVLNGHDHRAIELLLQM--KSSG---LVPNVFMLSSILKACAGAGA 225
Query: 133 MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192
+LG+Q+HG + K + + + L++ Y K L+DA VF + + ++W A +++
Sbjct: 226 FDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNA-LIS 284
Query: 193 NCREGHFH-QVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLE 251
C G H + F+ F + +E + N T ++VLK+ + + + RQ+HA KIG
Sbjct: 285 GCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASL-EAASATRQVHALAEKIGFI 343
Query: 252 SDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYL 311
D +V GL+D Y KC L DA RVFE +I + +M+ + A K
Sbjct: 344 FDAHVVNGLIDSYWKCSCLSDAIRVFEE-CSSGDIIAVTSMITALSQCDHGEGAIKLFME 402
Query: 312 MKASGIQIQESLINDLRIACSSISA 336
M G++ +++ L AC+S+SA
Sbjct: 403 MLRKGLEPDPFVLSSLLNACASLSA 427
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 88/324 (27%), Positives = 141/324 (43%), Gaps = 14/324 (4%)
Query: 12 MYTCLIKECTFQKDSAGAFELLNHIRK---RVNIKPTLLFLNRLLLMHVSCGQLDTARQL 68
M + ++K C AGAF+L I + N L+ M+ LD A ++
Sbjct: 212 MLSSILKACA----GAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKV 267
Query: 69 FDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACV 128
FD M RD W +I G + E ++F + RK+G L + VLK+
Sbjct: 268 FDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGL--RKEG---LGVNRTTLAAVLKSTA 322
Query: 129 CTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTA 188
+QVH L K+G + + LI+ Y K CL DA VF + + + T+
Sbjct: 323 SLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTS 382
Query: 189 KIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKI 248
I + H F EM R+ ++ + + SS+L AC + G+Q+HA+++K
Sbjct: 383 MITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQ-GKQVHAHLIKR 441
Query: 249 GLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKF 308
SD + LV Y KC + DAE F + ++ + SW+AM+ G ++G A +
Sbjct: 442 QFMSDAFAGNALVYTYAKCGSIEDAELAFSSL-PERGVVSWSAMIGGLAQHGHGKRALEL 500
Query: 309 LYLMKASGIQIQESLINDLRIACS 332
M GI + + AC+
Sbjct: 501 FGRMVDEGINPNHITMTSVLCACN 524
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 102/209 (48%), Gaps = 3/209 (1%)
Query: 129 CTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL-KRHNTVVWT 187
C + +LG QVH + G ++ + +L+ YG F ++DA VF + N V W
Sbjct: 19 CVPDAQLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWN 78
Query: 188 AKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVK 247
+ + F EM I+ + FS V+ AC G + + GRQ+HA +V+
Sbjct: 79 GLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTG-SRNIDAGRQVHAMVVR 137
Query: 248 IGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATK 307
+G E D + LVDMY K + A +FE + D ++ SWNA++ G + NG A +
Sbjct: 138 MGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPD-SDVVSWNALISGCVLNGHDHRAIE 196
Query: 308 FLYLMKASGIQIQESLINDLRIACSSISA 336
L MK+SG+ +++ + AC+ A
Sbjct: 197 LLLQMKSSGLVPNVFMLSSILKACAGAGA 225
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 122/278 (43%), Gaps = 11/278 (3%)
Query: 19 ECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFN 78
+ T ++A A ++ + +++ +N L+ + C L A ++F+E D
Sbjct: 319 KSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDII 378
Query: 79 SWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQ 138
+ MI + I LF EM+++ L +++ +L AC E GKQ
Sbjct: 379 AVTSMITALSQCDHGEGAIKLFMEMLRKG-----LEPDPFVLSSLLNACASLSAYEQGKQ 433
Query: 139 VHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGH 198
VH L K + +L+ Y K +EDA+ FS L V W+A I + GH
Sbjct: 434 VHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGH 493
Query: 199 FHQVFNDFKEMGRERIKKNSYTFSSVLKAC--GGVDDDGNCGRQMHANIVKIGLE-SDEY 255
+ F M E I N T +SVL AC G+ D+ R ++ G++ ++E+
Sbjct: 494 GKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAK--RYFNSMKEMFGIDRTEEH 551
Query: 256 VQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
C ++D+ G+ L DA + + + N + W A+L
Sbjct: 552 YSC-MIDLLGRAGKLDDAMELVNSMPFQANASVWGALL 588
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 50/105 (47%), Gaps = 4/105 (3%)
Query: 217 NSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERV 276
N + VLK D G Q+HA + G SD +V LV MYG + DA RV
Sbjct: 9 NEFALPVVLKCV----PDAQLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRV 64
Query: 277 FELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQE 321
F+ ++N SWN ++ Y++N +A + M SGIQ E
Sbjct: 65 FDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTE 109
>gi|296081733|emb|CBI20738.3| unnamed protein product [Vitis vinifera]
Length = 865
Score = 137 bits (344), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 89/285 (31%), Positives = 144/285 (50%), Gaps = 6/285 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR--K 107
N L+ M+ G AR++F++M D SW MI + +E + LF +++ K
Sbjct: 325 NSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLK 384
Query: 108 KGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
H L + + KAC C + ++ GKQ+H K G ++ + +++ Y K
Sbjct: 385 PDHFTLA--SITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGD 442
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
+ +A VF+ + + V WT+ I G+ Q + M + R+ + YTF++++KA
Sbjct: 443 MVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKA 502
Query: 228 CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
V GRQ+HAN++K+ SD +V LVDMY KC + DA R+F+ + + +NIA
Sbjct: 503 SSCVTALEQ-GRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKM-NVRNIA 560
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
WNAMLVG ++G EA MK+ GI+ + ACS
Sbjct: 561 LWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACS 605
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 94/335 (28%), Positives = 162/335 (48%), Gaps = 32/335 (9%)
Query: 15 CLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL 74
CL C + + + + ++ ++ + L+ ++ CG++ AR LFD M
Sbjct: 193 CLNSGCLWAAEGVHGYAI------KIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRE 246
Query: 75 RDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVC--TMN 132
RD W +M+ GYV + +E LF+E + L + + +L C+ T +
Sbjct: 247 RDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSG-----LRPDEFSVQLILNGCLWAGTDD 301
Query: 133 MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192
+ELGKQVHG+ K G ++S+ SL+N Y K C A VF+ +K + + W + I +
Sbjct: 302 LELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISS 361
Query: 193 NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL-----KACGGVDDDGNC------GRQM 241
+ + N F ++ E +K + +T +S+ KACG C G+Q+
Sbjct: 362 CAQSSLEEESVNLFIDLLHEGLKPDHFTLASITLATAAKACG-------CLVLLDQGKQI 414
Query: 242 HANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGL 301
HA+ +K G +SD +V G++DMY KC + +A VF I ++A W +M+ G + NG
Sbjct: 415 HAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVA-WTSMISGCVDNGN 473
Query: 302 YVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+A + + M+ S + E L A S ++A
Sbjct: 474 EDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTA 508
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 136/292 (46%), Gaps = 16/292 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADY-----QECITLFAEMM 104
N LL M+ CG L +ARQ+FD P RD +W ++ Y D QE + LF ++
Sbjct: 116 NNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYAASVDSNDGNAQEGLHLF-RLL 174
Query: 105 KRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
+ G + + VLK C+ + + + VHG K+G ++ ++G+L+N Y K
Sbjct: 175 RASLGSTTRM----TLAPVLKLCLNSGCLWAAEGVHGYAIKIGLEWDVFVSGALVNIYSK 230
Query: 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
+ DA +F ++ + V+W + + G + F F E R ++ + ++ +
Sbjct: 231 CGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLI 290
Query: 225 LKAC-GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
L C DD G+Q+H VK GL+SD V LV+MY K A VF D
Sbjct: 291 LNGCLWAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFN---DM 347
Query: 284 K--NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSS 333
K ++ SWN+M+ ++ L E+ + G++ + + +A ++
Sbjct: 348 KHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASITLATAA 399
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 123/258 (47%), Gaps = 10/258 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
+L M++ CG + A +F+ + D +W MI G VD + + + ++ M + +
Sbjct: 433 ILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSR---- 488
Query: 112 LLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
V P + ++KA C +E G+Q+H + KL + + SL++ Y K +ED
Sbjct: 489 --VMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIED 546
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
A +F ++ N +W A +V + G+ + N FK M I+ + +F +L AC
Sbjct: 547 AYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSH 606
Query: 231 VDDDGNCGRQMHANIVKIGLESD-EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+H+ G+E + E+ C LVD G+ L+++A++V E + K + AS
Sbjct: 607 AGLTSEAYEYLHSMPNDYGIEPEIEHYSC-LVDALGRAGLVQEADKVIETMPFKAS-ASI 664
Query: 290 NAMLVGYIRNGLYVEATK 307
N L+G R VE K
Sbjct: 665 NRALLGACRIQGDVETGK 682
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 97/207 (46%), Gaps = 13/207 (6%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
+L+ + T N+ LGK H + GS+ + L+ +L+ Y K L A VF +
Sbjct: 83 LLRTAISTHNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERD 142
Query: 183 TVVWTAKIVN-----NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC 237
V W A + + +G+ + + F+ + T + VLK C + C
Sbjct: 143 LVTWNAILGAYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCL----NSGC 198
Query: 238 ---GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLV 294
+H +KIGLE D +V LV++Y KC +RDA +F+ + ++++ WN ML
Sbjct: 199 LWAAEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWM-RERDVVLWNMMLK 257
Query: 295 GYIRNGLYVEATKFLYLMKASGIQIQE 321
GY++ GL EA + SG++ E
Sbjct: 258 GYVQLGLEKEAFQLFSEFHRSGLRPDE 284
>gi|302801912|ref|XP_002982712.1| hypothetical protein SELMODRAFT_116683 [Selaginella moellendorffii]
gi|300149811|gb|EFJ16465.1| hypothetical protein SELMODRAFT_116683 [Selaginella moellendorffii]
Length = 734
Score = 137 bits (344), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 91/309 (29%), Positives = 145/309 (46%), Gaps = 14/309 (4%)
Query: 28 GAFELLNHIRKRV----NIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVM 83
G E I KRV +I ++ N L+ M+ CG + ++FD MP ++ SW M
Sbjct: 126 GDLEQGREIHKRVLESRSIASDVVVQNSLVTMYARCGSVLEGIKIFDAMPRKNLVSWNAM 185
Query: 84 IVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLL 143
I +V DY E MKR++ L ++ +L AC N++LG +H +
Sbjct: 186 ISAFVQC-DYPEQALELYHRMKRER----LEPNGFVFASLLTACASLGNLQLGSSIHQRI 240
Query: 144 FKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVF 203
LG R+I + +LIN Y K C+++A VFS L + WT+ I + G + F
Sbjct: 241 TSLGLQRDIVMENALINMYSKCGCMDEALEVFSGLATRDVFTWTSMIAGYAQLGFGSEAF 300
Query: 204 NDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDM 263
+ M R+ + S TF ++L AC ++ G+ +H + G ES V+ L+ M
Sbjct: 301 AFYDRMRRDCVSPTSATFVALLSACSTLEQ----GKHLHEEVKAFGFESITVVETALMFM 356
Query: 264 YGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESL 323
Y +C L DAE +F + +K+ SW+AM+ + + G +A M G+Q+
Sbjct: 357 YSRCGSLEDAEFLFAKM-QQKDYVSWSAMVTSHAQFGDPGKALTLFRQMILEGMQLSLPT 415
Query: 324 INDLRIACS 332
ACS
Sbjct: 416 FCSALQACS 424
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 84/317 (26%), Positives = 154/317 (48%), Gaps = 21/317 (6%)
Query: 5 CLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRV---NIKPTLLFLNRLLLMHVSCGQ 61
C+ T+ + L+ C+ E H+ + V + + L+ M+ CG
Sbjct: 310 CVSPTSATFVALLSACS-------TLEQGKHLHEEVKAFGFESITVVETALMFMYSRCGS 362
Query: 62 LDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIV 121
L+ A LF +M +D+ SW+ M+ + D + +TLF +M+ M L P +
Sbjct: 363 LEDAEFLFAKMQQKDYVSWSAMVTSHAQFGDPGKALTLFRQMILEG---MQLSLPTF--C 417
Query: 122 CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH 181
L+AC + L K + L+ G + S+ L++ Y K +E+A +F +++
Sbjct: 418 SALQACSLKRDSRLSKTIRELIDWSGIDKMDSIRADLVSAYSKCGDMEEARKIFDRMESR 477
Query: 182 NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQM 241
+ + WT I ++G F M E ++ +S TFSSVL+AC ++D GR++
Sbjct: 478 DVLTWTVMIKGYAQQGDSKAALELFHRMKPEGVEPDSVTFSSVLQACSNLED----GREV 533
Query: 242 HANIVKI-GLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
HA I+ G + +++ GL++MY +C +RDA ++FE + D+ + SW+A++ R+G
Sbjct: 534 HARILAAQGGKMSDFLGNGLINMYARCGSMRDARQIFESM-DRSSRISWSAIMTLCARHG 592
Query: 301 LYVEATKFLYLMKASGI 317
+ + LM G+
Sbjct: 593 QHDDIIDTYRLMVNEGV 609
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 85/330 (25%), Positives = 156/330 (47%), Gaps = 18/330 (5%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLL-MHVSCGQLDTARQLFDE 71
Y L++EC +++ + L + +R+ + +L R ++ M+ CG L A+ FDE
Sbjct: 17 YARLLQECCSRRNVSEGRRLHDDLRRSGYGDSS--YLRRCVVQMYAKCGCLADAKAAFDE 74
Query: 72 MPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTM 131
+ ++ W +MI GY +E + LF +M G +I L AC
Sbjct: 75 IADKNDFVWNLMISGYARSGKNREALELFHKMDIPPNG--------FIFASALAACAGLG 126
Query: 132 NMELGKQVHGLLFKLGS-SRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKI 190
++E G+++H + + S + ++ + SL+ Y + + + +F + R N V W A I
Sbjct: 127 DLEQGREIHKRVLESRSIASDVVVQNSLVTMYARCGSVLEGIKIFDAMPRKNLVSWNAMI 186
Query: 191 VNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGN--CGRQMHANIVKI 248
+ + Q + M RER++ N + F+S+L AC + GN G +H I +
Sbjct: 187 SAFVQCDYPEQALELYHRMKRERLEPNGFVFASLLTACASL---GNLQLGSSIHQRITSL 243
Query: 249 GLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKF 308
GL+ D ++ L++MY KC + +A VF + +++ +W +M+ GY + G EA F
Sbjct: 244 GLQRDIVMENALINMYSKCGCMDEALEVFSGLA-TRDVFTWTSMIAGYAQLGFGSEAFAF 302
Query: 309 LYLMKASGIQIQESLINDLRIACSSISASK 338
M+ + + L ACS++ K
Sbjct: 303 YDRMRRDCVSPTSATFVALLSACSTLEQGK 332
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 80/327 (24%), Positives = 159/327 (48%), Gaps = 19/327 (5%)
Query: 12 MYTCLIKECTFQKDSAGAFELLNHIRKRVN---IKPTLLFLNRLLLMHVSCGQLDTARQL 68
++ L+ C S G +L + I +R+ ++ ++ N L+ M+ CG +D A ++
Sbjct: 216 VFASLLTACA----SLGNLQLGSSIHQRITSLGLQRDIVMENALINMYSKCGCMDEALEV 271
Query: 69 FDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCVLKAC 127
F + RD +W MI GY + E F + M+R V P + V +L AC
Sbjct: 272 FSGLATRDVFTWTSMIAGYAQLGFGSEAFA-FYDRMRRD-----CVSPTSATFVALLSAC 325
Query: 128 VCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWT 187
+E GK +H + G + +L+ Y + LEDA+F+F+++++ + V W+
Sbjct: 326 S---TLEQGKHLHEEVKAFGFESITVVETALMFMYSRCGSLEDAEFLFAKMQQKDYVSWS 382
Query: 188 AKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVK 247
A + ++ + G + F++M E ++ + TF S L+AC + D + + I
Sbjct: 383 AMVTSHAQFGDPGKALTLFRQMILEGMQLSLPTFCSALQACS-LKRDSRLSKTIRELIDW 441
Query: 248 IGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATK 307
G++ + ++ LV Y KC + +A ++F+ + + +++ +W M+ GY + G A +
Sbjct: 442 SGIDKMDSIRADLVSAYSKCGDMEEARKIFDRM-ESRDVLTWTVMIKGYAQQGDSKAALE 500
Query: 308 FLYLMKASGIQIQESLINDLRIACSSI 334
+ MK G++ + + ACS++
Sbjct: 501 LFHRMKPEGVEPDSVTFSSVLQACSNL 527
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 76/298 (25%), Positives = 130/298 (43%), Gaps = 23/298 (7%)
Query: 3 NLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVN---IKPTLLFLNRLLLMHVSC 59
L LP + ++ C+ ++DS L IR+ ++ I L+ + C
Sbjct: 410 QLSLPT----FCSALQACSLKRDS----RLSKTIRELIDWSGIDKMDSIRADLVSAYSKC 461
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI 119
G ++ AR++FD M RD +W VMI GY D + + LF M + F +
Sbjct: 462 GDMEEARKIFDRMESRDVLTWTVMIKGYAQQGDSKAALELFHRMKPEGVEPDSVTFSS-- 519
Query: 120 IVCVLKACVCTMNMELGKQVHG-LLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL 178
VL+AC N+E G++VH +L G + L LIN Y + + DA +F +
Sbjct: 520 ---VLQACS---NLEDGREVHARILAAQGGKMSDFLGNGLINMYARCGSMRDARQIFESM 573
Query: 179 KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCG 238
R + + W+A + R G + + ++ M E + + T ++L +C
Sbjct: 574 DRSSRISWSAIMTLCARHGQHDDIIDTYRLMVNEGVVPDGVTLIAILNSCSHAGLTDEAC 633
Query: 239 RQMHANIVKIGLES-DEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
I L DE+ QC +VD+ + L +AE + +I D+ ++ + N ML
Sbjct: 634 HYFTWIISDFELPHLDEHYQC-MVDLLCRAGRLDEAEELISMI-DRPDVVTLNTMLAA 689
>gi|296082505|emb|CBI21510.3| unnamed protein product [Vitis vinifera]
Length = 746
Score = 137 bits (344), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 84/277 (30%), Positives = 143/277 (51%), Gaps = 7/277 (2%)
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI 119
G ++ AR +FD++ + +W +I GY + LFA+M + +V ++
Sbjct: 200 GNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETN-----VVPDRYV 254
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
+ VL AC +E GKQ+H + + G+ ++S+ LI+FY K ++ +F Q+
Sbjct: 255 VSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMV 314
Query: 180 RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGR 239
N + WT I + + F EM R K + + +SVL +CG + GR
Sbjct: 315 VKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGS-REALEQGR 373
Query: 240 QMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRN 299
Q+HA +K LESDE+V+ GL+DMY K LL DA++VF+++ + +N+ S+NAM+ GY
Sbjct: 374 QVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAE-QNVISYNAMIEGYSSQ 432
Query: 300 GLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
EA + + M+ + E L A S++++
Sbjct: 433 EKLSEALELFHEMRVRLQKPNEFTFAALITAASNLAS 469
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 81/277 (29%), Positives = 138/277 (49%), Gaps = 8/277 (2%)
Query: 61 QLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWII 120
++D AR +FD+MP ++ +W+ M+ Y +E + +F ++ ++ H +++
Sbjct: 99 RVDNARVVFDKMPHKNLITWSSMVSMYSQQGYSEEALMVFVDLQRKSGEHP----NEFVL 154
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
V++AC +E G Q+HG + + G +++ + SLI+FY K +E+A VF QL
Sbjct: 155 ASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGNIEEARLVFDQLSE 214
Query: 181 HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDD-DGNCGR 239
V WT I + G F +M + + Y SSVL AC ++ +G G+
Sbjct: 215 KTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEG--GK 272
Query: 240 QMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRN 299
Q+HA +++ G E D V L+D Y KC ++ ++F+ +V KNI SW M+ GY++N
Sbjct: 273 QIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMV-VKNIISWTTMISGYMQN 331
Query: 300 GLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
EA K M G + + +C S A
Sbjct: 332 SFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSREA 368
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 80/285 (28%), Positives = 132/285 (46%), Gaps = 9/285 (3%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
+N L+ + C ++ R+LFD+M +++ SW MI GY+ + E + LF EM +
Sbjct: 290 VNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNR--- 346
Query: 109 GHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
L P + VL +C +E G+QVH K + + LI+ Y K
Sbjct: 347 ---LGWKPDGFACTSVLTSCGSREALEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNL 403
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
L DA VF + N + + A I + + F EM K N +TF++++ A
Sbjct: 404 LIDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLQKPNEFTFAALITA 463
Query: 228 CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
+ + G+Q H +VK+GL+ +V LVDMY KC + +A ++F + +++
Sbjct: 464 ASNLASLRH-GQQFHNQLVKMGLDFCPFVTNALVDMYAKCGSIEEARKMFNSSI-WRDVV 521
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
WN+M+ + ++G EA M GIQ + ACS
Sbjct: 522 CWNSMISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSACS 566
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 124/283 (43%), Gaps = 18/283 (6%)
Query: 20 CTFQKDSAGAFELLNHIRK------RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMP 73
CT S G+ E L R+ + N++ N L+ M+ L A+++FD M
Sbjct: 356 CTSVLTSCGSREALEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMA 415
Query: 74 LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNM 133
++ S+ MI GY E + LF EM R + F A I A ++
Sbjct: 416 EQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLQKPNEFTFAALIT-----AASNLASL 470
Query: 134 ELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNN 193
G+Q H L K+G +T +L++ Y K +E+A +F+ + V W + I +
Sbjct: 471 RHGQQFHNQLVKMGLDFCPFVTNALVDMYAKCGSIEEARKMFNSSIWRDVVCWNSMISTH 530
Query: 194 CREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC---GGVDDDGNCGRQMHANIVKIGL 250
+ G + F+EM +E I+ N TF +VL AC G V+D N M +K G
Sbjct: 531 AQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSACSHAGRVEDGLNHFNSMPGFGIKPG- 589
Query: 251 ESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
E+ C +V + G+ L +A+ E + + W ++L
Sbjct: 590 --TEHYAC-VVSLLGRSGKLFEAKEFIEKMPIEPAAIVWRSLL 629
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 97/199 (48%), Gaps = 7/199 (3%)
Query: 137 KQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCRE 196
K +HG + G + L LIN K +++A VF ++ N + W++ + ++
Sbjct: 69 KIIHGQIIVSGLQSDTFLANILINVCSKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQ 128
Query: 197 GHFHQVFNDFKEMGRERIK-KNSYTFSSVLKACG--GVDDDGNCGRQMHANIVKIGLESD 253
G+ + F ++ R+ + N + +SV++AC GV + G Q+H +V+ G + D
Sbjct: 129 GYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEK---GAQLHGFVVRSGFDQD 185
Query: 254 EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMK 313
YV L+D Y K + +A VF+ + +K + +W ++ GY + G + + M+
Sbjct: 186 VYVGTSLIDFYSKNGNIEEARLVFDQLSEKTAV-TWTTIIAGYTKCGRSAVSLELFAQMR 244
Query: 314 ASGIQIQESLINDLRIACS 332
+ + +++ + ACS
Sbjct: 245 ETNVVPDRYVVSSVLSACS 263
>gi|115478174|ref|NP_001062682.1| Os09g0251500 [Oryza sativa Japonica Group]
gi|47848472|dbj|BAD22327.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|47848643|dbj|BAD22491.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113630915|dbj|BAF24596.1| Os09g0251500 [Oryza sativa Japonica Group]
gi|215767397|dbj|BAG99625.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 877
Score = 137 bits (344), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 82/290 (28%), Positives = 146/290 (50%), Gaps = 8/290 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEM-PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
N L+ M+ G +D AR++FDE R+ SW ++ YV + I +F EM+
Sbjct: 139 NALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGI 198
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
F CV+ AC + N++ G+QVH ++ ++G +++ +L++ Y K +
Sbjct: 199 QPTEFGFS-----CVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRV 253
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+ A +F ++ + V W A I GH H+ +M + N + SS+LKAC
Sbjct: 254 DIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKAC 313
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
G + GRQ+H ++K +SD+Y+ GLVDMY K L DA +VF+ + +++
Sbjct: 314 AGA-GAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWM-SHRDLIL 371
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASK 338
WNA++ G G + EA Y ++ G+ + + + + + +S+ A+
Sbjct: 372 WNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAAS 421
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 92/325 (28%), Positives = 161/325 (49%), Gaps = 10/325 (3%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
++C++ CT ++ A ++ + R+ + + N L+ M+V G++D A +F++M
Sbjct: 205 FSCVVNACTGSRN-IDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKM 263
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN 132
P D SW +I G V I L +M + G LV +++ +LKAC
Sbjct: 264 PDSDVVSWNALISGCVLNGHDHRAIELLLQM--KSSG---LVPNVFMLSSILKACAGAGA 318
Query: 133 MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192
+LG+Q+HG + K + + + L++ Y K L+DA VF + + ++W A +++
Sbjct: 319 FDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNA-LIS 377
Query: 193 NCREGHFH-QVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLE 251
C G H + F+ F + +E + N T ++VLK+ + + + RQ+HA KIG
Sbjct: 378 GCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASL-EAASATRQVHALAEKIGFI 436
Query: 252 SDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYL 311
D +V GL+D Y KC L DA RVFE +I + +M+ + A K
Sbjct: 437 FDAHVVNGLIDSYWKCSCLSDAIRVFEE-CSSGDIIAVTSMITALSQCDHGEGAIKLFME 495
Query: 312 MKASGIQIQESLINDLRIACSSISA 336
M G++ +++ L AC+S+SA
Sbjct: 496 MLRKGLEPDPFVLSSLLNACASLSA 520
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 83/288 (28%), Positives = 137/288 (47%), Gaps = 11/288 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ + C + AR++FDE+P SW+ ++ Y + + I F M R +G
Sbjct: 41 NHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGM--RAEG 98
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ + + VLK C + +LG QVH + G ++ + +L+ YG F ++
Sbjct: 99 ---VCCNEFALPVVLK---CVPDAQLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMD 152
Query: 170 DADFVFSQL-KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
DA VF + N V W + + F EM I+ + FS V+ AC
Sbjct: 153 DARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNAC 212
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
G + + GRQ+HA +V++G E D + LVDMY K + A +FE + D ++ S
Sbjct: 213 TG-SRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPD-SDVVS 270
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
WNA++ G + NG A + L MK+SG+ +++ + AC+ A
Sbjct: 271 WNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGA 318
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 88/324 (27%), Positives = 141/324 (43%), Gaps = 14/324 (4%)
Query: 12 MYTCLIKECTFQKDSAGAFELLNHIRK---RVNIKPTLLFLNRLLLMHVSCGQLDTARQL 68
M + ++K C AGAF+L I + N L+ M+ LD A ++
Sbjct: 305 MLSSILKACA----GAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKV 360
Query: 69 FDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACV 128
FD M RD W +I G + E ++F + RK+G L + VLK+
Sbjct: 361 FDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGL--RKEG---LGVNRTTLAAVLKSTA 415
Query: 129 CTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTA 188
+QVH L K+G + + LI+ Y K CL DA VF + + + T+
Sbjct: 416 SLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTS 475
Query: 189 KIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKI 248
I + H F EM R+ ++ + + SS+L AC + G+Q+HA+++K
Sbjct: 476 MITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQ-GKQVHAHLIKR 534
Query: 249 GLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKF 308
SD + LV Y KC + DAE F + ++ + SW+AM+ G ++G A +
Sbjct: 535 QFMSDAFAGNALVYTYAKCGSIEDAELAFSSL-PERGVVSWSAMIGGLAQHGHGKRALEL 593
Query: 309 LYLMKASGIQIQESLINDLRIACS 332
M GI + + AC+
Sbjct: 594 FGRMVDEGINPNHITMTSVLCACN 617
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/280 (25%), Positives = 123/280 (43%), Gaps = 11/280 (3%)
Query: 17 IKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRD 76
+ + T ++A A ++ + +++ +N L+ + C L A ++F+E D
Sbjct: 410 VLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGD 469
Query: 77 FNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELG 136
+ MI + I LF EM+++ L +++ +L AC E G
Sbjct: 470 IIAVTSMITALSQCDHGEGAIKLFMEMLRKG-----LEPDPFVLSSLLNACASLSAYEQG 524
Query: 137 KQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCRE 196
KQVH L K + +L+ Y K +EDA+ FS L V W+A I +
Sbjct: 525 KQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQH 584
Query: 197 GHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--GGVDDDGNCGRQMHANIVKIGLE-SD 253
GH + F M E I N T +SVL AC G+ D+ R ++ G++ ++
Sbjct: 585 GHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAK--RYFNSMKEMFGIDRTE 642
Query: 254 EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
E+ C ++D+ G+ L DA + + + N + W A+L
Sbjct: 643 EHYSC-MIDLLGRAGKLDDAMELVNSMPFQANASVWGALL 681
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 80/186 (43%), Gaps = 6/186 (3%)
Query: 136 GKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCR 195
G +H L K G SL LI+FY K R A VF ++ V W++ +
Sbjct: 23 GAHLHANLLKSGFL--ASLRNHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSN 80
Query: 196 EGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEY 255
G F M E + N + VLK D G Q+HA + G SD +
Sbjct: 81 NGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCV----PDAQLGAQVHAMAMATGFGSDVF 136
Query: 256 VQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKAS 315
V LV MYG + DA RVF+ ++N SWN ++ Y++N +A + M S
Sbjct: 137 VANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWS 196
Query: 316 GIQIQE 321
GIQ E
Sbjct: 197 GIQPTE 202
>gi|255568940|ref|XP_002525440.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535253|gb|EEF36930.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 878
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 91/326 (27%), Positives = 155/326 (47%), Gaps = 16/326 (4%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLF----LNRLLLMHVSCGQLDTARQL 68
Y +++ CT S GA +L I + IK F + L+ M+ G+LD AR +
Sbjct: 495 YPSILRTCT----SFGALDLGEQIHSQA-IKTGFEFNVYVCSVLIDMYAKLGKLDIARGI 549
Query: 69 FDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACV 128
+ D SW +I GY + E + LF EM+ R + F + I AC
Sbjct: 550 LRRLNEEDVVSWTALIAGYTQHDLFTEALNLFDEMLNRGIQSDNIGFSSAI-----SACA 604
Query: 129 CTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTA 188
+ G+Q+H + G S ++S+ +L++ Y + +++A+ F ++ +++ W A
Sbjct: 605 GIQALSQGQQIHAQSYISGYSEDLSIGNALVSLYARCGRIQEANLAFEKIDAKDSISWNA 664
Query: 189 KIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKI 248
+ + G+ + F +M R IK + +TF S + A + + G+Q+HA I+K
Sbjct: 665 LMSGFAQSGYCEEALKIFAQMTRANIKASLFTFGSAVSAAANMANIKQ-GKQIHAMIMKT 723
Query: 249 GLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKF 308
G +S+ V L+ +Y KC + A+R F I +K I SWNAM+ GY ++G +EA
Sbjct: 724 GFDSEIEVSNALITLYAKCGCIDGAKREFFEIPEKNEI-SWNAMITGYSQHGCGIEAVNL 782
Query: 309 LYLMKASGIQIQESLINDLRIACSSI 334
MK G + + ACS +
Sbjct: 783 FQKMKQVGAKPNHVTFVGVISACSHV 808
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 75/267 (28%), Positives = 124/267 (46%), Gaps = 7/267 (2%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL ++V C + TA + F + W VM+V Y + + + +F +M
Sbjct: 432 LLDLYVKCSDITTAHKFFATTQTENVVLWNVMLVAYGQLDNLSKSFCIFRQMQIEGLIPN 491
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+P+ +L+ C ++LG+Q+H K G N+ + LI+ Y K L+ A
Sbjct: 492 QFTYPS-----ILRTCTSFGALDLGEQIHSQAIKTGFEFNVYVCSVLIDMYAKLGKLDIA 546
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
+ +L + V WTA I + F + N F EM I+ ++ FSS + AC G+
Sbjct: 547 RGILRRLNEEDVVSWTALIAGYTQHDLFTEALNLFDEMLNRGIQSDNIGFSSAISACAGI 606
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
G+Q+HA G D + LV +Y +C +++A FE I D K+ SWNA
Sbjct: 607 QALSQ-GQQIHAQSYISGYSEDLSIGNALVSLYARCGRIQEANLAFEKI-DAKDSISWNA 664
Query: 292 MLVGYIRNGLYVEATKFLYLMKASGIQ 318
++ G+ ++G EA K M + I+
Sbjct: 665 LMSGFAQSGYCEEALKIFAQMTRANIK 691
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/248 (28%), Positives = 123/248 (49%), Gaps = 9/248 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ ++ G + +AR++FDE+ ++D SW +I Y +E I LF EM
Sbjct: 228 NPLIDLYAKNGFIRSARKVFDELCMKDSVSWVAVISSYSQNGFGEEAIRLFCEM------ 281
Query: 110 HMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
H+ + P ++ VL AC ++G+Q+H L+FK G + +L+ Y +
Sbjct: 282 HISGLSPTPYVFSSVLSACAKIELFDIGEQLHALVFKCGFFLETYVCNALVTLYSRLGNF 341
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
A VFS++K + V + + I ++G + FK+M + +K + T +S+L AC
Sbjct: 342 ISAQQVFSKIKCKDEVSYNSLISGLSQQGCSDRALELFKKMQLDHLKPDCVTVASLLSAC 401
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
+ G Q+H+ +K G+ D ++ L+D+Y KC + A + F +N+
Sbjct: 402 ASIKSLSK-GEQLHSYAIKAGMCLDIIIEGSLLDLYVKCSDITTAHKFFA-TTQTENVVL 459
Query: 289 WNAMLVGY 296
WN MLV Y
Sbjct: 460 WNVMLVAY 467
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 78/291 (26%), Positives = 137/291 (47%), Gaps = 15/291 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ ++ G +A+Q+F ++ +D S+ +I G + LF KK
Sbjct: 329 NALVTLYSRLGNFISAQQVFSKIKCKDEVSYNSLISGLSQQGCSDRALELF------KKM 382
Query: 110 HMLLVFPAWIIVC-VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+ + P + V +L AC ++ G+Q+H K G +I + GSL++ Y K +
Sbjct: 383 QLDHLKPDCVTVASLLSACASIKSLSKGEQLHSYAIKAGMCLDIIIEGSLLDLYVKCSDI 442
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
A F+ + N V+W +V + + + F F++M E + N +T+ S+L+ C
Sbjct: 443 TTAHKFFATTQTENVVLWNVMLVAYGQLDNLSKSFCIFRQMQIEGLIPNQFTYPSILRTC 502
Query: 229 ---GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
G +D G Q+H+ +K G E + YV L+DMY K L A + + ++++
Sbjct: 503 TSFGALD----LGEQIHSQAIKTGFEFNVYVCSVLIDMYAKLGKLDIARGILRRL-NEED 557
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+ SW A++ GY ++ L+ EA M GIQ + AC+ I A
Sbjct: 558 VVSWTALIAGYTQHDLFTEALNLFDEMLNRGIQSDNIGFSSAISACAGIQA 608
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 130/289 (44%), Gaps = 10/289 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
++L+ + + G L++ ++FD+MP R +W ++ G V + LFA+M++
Sbjct: 126 DKLIEFYFAVGDLNSVVKVFDDMPSRSLMTWNKVLSGLVANKTSNRVLGLFAQMVEEN-- 183
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELG--KQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
V P + V + + N+ +Q+H + G + LI+ Y K
Sbjct: 184 ----VNPNEVTVASVLRAYGSGNVAFYYVEQIHASIISRGLGTSSIACNPLIDLYAKNGF 239
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
+ A VF +L ++V W A I + + G + F EM + Y FSSVL A
Sbjct: 240 IRSARKVFDELCMKDSVSWVAVISSYSQNGFGEEAIRLFCEMHISGLSPTPYVFSSVLSA 299
Query: 228 CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
C + + + G Q+HA + K G + YV LV +Y + A++VF I K +
Sbjct: 300 CAKI-ELFDIGEQLHALVFKCGFFLETYVCNALVTLYSRLGNFISAQQVFSKIKCKDEV- 357
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
S+N+++ G + G A + M+ ++ + L AC+SI +
Sbjct: 358 SYNSLISGLSQQGCSDRALELFKKMQLDHLKPDCVTVASLLSACASIKS 406
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 90/198 (45%), Gaps = 1/198 (0%)
Query: 137 KQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCRE 196
K++H + K+G + L LI FY L VF + + + W +
Sbjct: 107 KKLHSKILKIGFDKESVLCDKLIEFYFAVGDLNSVVKVFDDMPSRSLMTWNKVLSGLVAN 166
Query: 197 GHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYV 256
++V F +M E + N T +SVL+A G + Q+HA+I+ GL +
Sbjct: 167 KTSNRVLGLFAQMVEENVNPNEVTVASVLRAYGSGNVAFYYVEQIHASIISRGLGTSSIA 226
Query: 257 QCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASG 316
L+D+Y K +R A +VF+ + K ++ SW A++ Y +NG EA + M SG
Sbjct: 227 CNPLIDLYAKNGFIRSARKVFDELCMKDSV-SWVAVISSYSQNGFGEEAIRLFCEMHISG 285
Query: 317 IQIQESLINDLRIACSSI 334
+ + + + AC+ I
Sbjct: 286 LSPTPYVFSSVLSACAKI 303
>gi|224116778|ref|XP_002331875.1| predicted protein [Populus trichocarpa]
gi|222875393|gb|EEF12524.1| predicted protein [Populus trichocarpa]
Length = 675
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 96/277 (34%), Positives = 142/277 (51%), Gaps = 15/277 (5%)
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAW- 118
G+++ +LF+EMP+RD SW MI G +E + +F +M++ V P W
Sbjct: 150 GRVEEGVRLFEEMPVRDVISWTSMIGGLDLNGKSEEALFVFKKMLRSG------VEPTWS 203
Query: 119 IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL 178
CVL AC + LG QVHG + KLG + ++ SLI FY +E A +F++
Sbjct: 204 TFACVLSACANAVEFNLGVQVHGHVVKLGCFFHEFISVSLITFYANCMKIEHAHKIFNET 263
Query: 179 KRHNTVVWTAKI---VNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDG 235
N V WTA + V N + +VF D +MG N TFS LKAC G++
Sbjct: 264 LTKNVVKWTALLTAYVWNNKHQDALRVFGDMTKMG---ALPNQSTFSITLKACCGLEALD 320
Query: 236 NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
G+++H +K+GLE+D +V LV MY +C + A VF I ++K+I SWN+++VG
Sbjct: 321 K-GKEIHTMAIKLGLETDVFVGNSLVVMYTECGNVNSAVAVFRNI-NEKDIVSWNSIIVG 378
Query: 296 YIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
++G + A F M G+ E L ACS
Sbjct: 379 SAQHGFGLWALIFFNQMIRRGVDPNEITFTGLLSACS 415
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 69/293 (23%), Positives = 130/293 (44%), Gaps = 15/293 (5%)
Query: 44 PTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEM 103
P L +++ + +L A +LFD M +RD SW MI G +D + LF EM
Sbjct: 41 PNLHLYTKMIAGYTRNDRLCDALKLFDRMSVRDVVSWNSMIKGCLDCGNLGMATRLFDEM 100
Query: 104 MKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYG 163
++ +W ++ + +EL ++ LF ++++ ++++ Y
Sbjct: 101 PEKN-------VISW--TTMVNGYLKFGRVELAQR----LFLDMHVKDVAAWNAMVHGYF 147
Query: 164 KFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSS 223
+ +E+ +F ++ + + WT+ I G + FK+M R ++ TF+
Sbjct: 148 ENGRVEEGVRLFEEMPVRDVISWTSMIGGLDLNGKSEEALFVFKKMLRSGVEPTWSTFAC 207
Query: 224 VLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
VL AC + N G Q+H ++VK+G E++ L+ Y C + A ++F +
Sbjct: 208 VLSACANA-VEFNLGVQVHGHVVKLGCFFHEFISVSLITFYANCMKIEHAHKIFNETL-T 265
Query: 284 KNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
KN+ W A+L Y+ N + +A + M G +S + AC + A
Sbjct: 266 KNVVKWTALLTAYVWNNKHQDALRVFGDMTKMGALPNQSTFSITLKACCGLEA 318
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 113/244 (46%), Gaps = 9/244 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ + +C +++ A ++F+E ++ W ++ YV +Q+ + +F +M K M
Sbjct: 243 LITFYANCMKIEHAHKIFNETLTKNVVKWTALLTAYVWNNKHQDALRVFGDMTK-----M 297
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+ LKAC ++ GK++H + KLG ++ + SL+ Y + + A
Sbjct: 298 GALPNQSTFSITLKACCGLEALDKGKEIHTMAIKLGLETDVFVGNSLVVMYTECGNVNSA 357
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG-- 229
VF + + V W + IV + + G F +M R + N TF+ +L AC
Sbjct: 358 VAVFRNINEKDIVSWNSIIVGSAQHGFGLWALIFFNQMIRRGVDPNEITFTGLLSACSRS 417
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
G+ G C + + + K + ++ C +VD+ G+C L +AE + + K N W
Sbjct: 418 GMLLKGRCFFE-YISRYKSNVLRPQHYAC-MVDILGRCGKLDEAEELVRYMPVKANSMIW 475
Query: 290 NAML 293
A+L
Sbjct: 476 LALL 479
>gi|302766239|ref|XP_002966540.1| hypothetical protein SELMODRAFT_61257 [Selaginella moellendorffii]
gi|300165960|gb|EFJ32567.1| hypothetical protein SELMODRAFT_61257 [Selaginella moellendorffii]
Length = 630
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 89/324 (27%), Positives = 149/324 (45%), Gaps = 13/324 (4%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCG---QLDTARQLF 69
Y L++ C + A + +HI + ++ N L+ M+ CG L AR +F
Sbjct: 1 YASLLRRCGISRSLADGRRVHDHILATGHFLRSVHLGNLLIQMYRKCGGTSSLADARAVF 60
Query: 70 DEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVC 129
D+MP +D SW+ +I Y +E I LF + M + M +IV L AC
Sbjct: 61 DQMPKKDVVSWSCIIAAYGQAGHCREAINLF-QRMDVEPNEM-------VIVSTLAACSG 112
Query: 130 TMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAK 189
++ LG +H + +++ + +L+N Y K +E A VF Q+ + V WTA
Sbjct: 113 AKDLALGMAIHARILSPDLRKSVFVGTALLNMYAKCGAIEQARAVFDQIPHKDVVSWTAM 172
Query: 190 IVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIG 249
I + G Q + M + R++ N TF + + AC + + GR++HA ++ +G
Sbjct: 173 ITAFAQMGDCRQALETLEGMIQARVQPNPVTFVAAITACSS-REFLDRGRKIHAAVIDLG 231
Query: 250 LESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFL 309
L D +Q LV MY K +A VF+ + D+ + SWN+M+ + + A
Sbjct: 232 LHGDITIQNALVSMYAKGSSAEEALSVFQRMEDRNRV-SWNSMIAAFAASAQSCAAMGLF 290
Query: 310 YLMKASGIQIQESLINDLRIACSS 333
+ M GI+ + + ACSS
Sbjct: 291 HGMNLEGIKPDDVSFLGVLSACSS 314
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/304 (26%), Positives = 138/304 (45%), Gaps = 10/304 (3%)
Query: 17 IKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRD 76
+ C+ KD A + I +++ ++ LL M+ CG ++ AR +FD++P +D
Sbjct: 107 LAACSGAKDLALGMAIHARILSP-DLRKSVFVGTALLNMYAKCGAIEQARAVFDQIPHKD 165
Query: 77 FNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELG 136
SW MI + + D ++ + M++ + + F V + AC ++ G
Sbjct: 166 VVSWTAMITAFAQMGDCRQALETLEGMIQARVQPNPVTF-----VAAITACSSREFLDRG 220
Query: 137 KQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCRE 196
+++H + LG +I++ +L++ Y K E+A VF +++ N V W + I
Sbjct: 221 RKIHAAVIDLGLHGDITIQNALVSMYAKGSSAEEALSVFQRMEDRNRVSWNSMIAAFAAS 280
Query: 197 GHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLES--DE 254
F M E IK + +F VL AC +C R +H+ + + S D
Sbjct: 281 AQSCAAMGLFHGMNLEGIKPDDVSFLGVLSACSSTRCLRSCKR-IHSQLELAAVHSPPDL 339
Query: 255 YVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKA 314
V+ LV Y KC L AER+F+ I KN+ SW AML Y +G +A + M
Sbjct: 340 SVENSLVTAYAKCGDLEAAERIFQRI-PGKNVVSWTAMLTAYTFHGNGSKALELYDKMVG 398
Query: 315 SGIQ 318
IQ
Sbjct: 399 QSIQ 402
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/267 (22%), Positives = 122/267 (45%), Gaps = 26/267 (9%)
Query: 40 VNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITL 99
V+ P L N L+ + CG L+ A ++F +P ++ SW M+ Y + + + L
Sbjct: 333 VHSPPDLSVENSLVTAYAKCGDLEAAERIFQRIPGKNVVSWTAMLTAYTFHGNGSKALEL 392
Query: 100 FAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
+ +M+ + + P + +++ V+ A ++ L +++H + I + +L
Sbjct: 393 YDKMVGQS------IQPDSVVLLNVIYAGSLVGDVGLARKLHARVASSSFMLKIQIQNAL 446
Query: 159 INFYGKFRCLEDADFVFSQLKRHN-----TVVWTAKIVNNCREGHFHQVFNDFKEMGRER 213
IN Y + LE+A VF ++R N TV W++ + GH +++M E
Sbjct: 447 INMYTRCGSLEEARRVFDGIERKNLVARDTVTWSSLVAGYAHHGHAEYAILLYRDMHLEG 506
Query: 214 IKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESD-------EYVQCGLVDMYGK 266
++ +S T+ S+L +C + G A + + D ++ +C +VD+ G+
Sbjct: 507 VQPDSVTYVSILNSC------SHAGLLAQARHFFVSMVEDHCLAAWPDHWKC-MVDVLGR 559
Query: 267 CRLLRDAERVFELIVDKKNIASWNAML 293
+ AE V + + ++ +WN +L
Sbjct: 560 AGFVGRAEDVVRNMPFQPDVVAWNTLL 586
>gi|356544234|ref|XP_003540559.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
mitochondrial-like [Glycine max]
Length = 916
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 94/302 (31%), Positives = 146/302 (48%), Gaps = 13/302 (4%)
Query: 37 RKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL--RDFNSWAVMIVGYVDVADYQ 94
+ R + P + L +L ++S G+LD A QLF +MP+ R+ +W VMI G+ A Y+
Sbjct: 140 KMRNSAVPDQVALVTVLNAYISLGKLDDACQLFQQMPIPIRNVVAWNVMISGHAKTAHYE 199
Query: 95 ECITLFAEMMKR--KKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNI 152
E + F +M K K L VL A + G VH K G +I
Sbjct: 200 EALAFFHQMSKHGVKSSRSTLA-------SVLSAIASLAALNHGLLVHAHAIKQGFESSI 252
Query: 153 SLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRE 212
+ SLIN YGK + +DA VF + + N +VW A + + G V F +M
Sbjct: 253 YVASSLINMYGKCQMPDDARQVFDAISQKNMIVWNAMLGVYSQNGFLSNVMELFLDMISC 312
Query: 213 RIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRD 272
I + +T++S+L C + GRQ+H+ I+K S+ +V L+DMY K L++
Sbjct: 313 GIHPDEFTYTSILSTCACFEYL-EVGRQLHSAIIKKRFTSNLFVNNALIDMYAKAGALKE 371
Query: 273 AERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
A + FE + + +I SWNA++VGY++ + A M GI E + + AC
Sbjct: 372 AGKHFEHMTYRDHI-SWNAIIVGYVQEEVEAGAFSLFRRMILDGIVPDEVSLASILSACG 430
Query: 333 SI 334
+I
Sbjct: 431 NI 432
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 89/296 (30%), Positives = 140/296 (47%), Gaps = 9/296 (3%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
++ ++ L + L+ M+ CG + A + + MP R S +I GY + + +E I
Sbjct: 447 KLGLETNLFAGSSLIDMYSKCGDIKDAHKTYSSMPERSVVSVNALIAGYA-LKNTKESIN 505
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTG-S 157
L EM + F + I VC A V LG Q+H + K G G S
Sbjct: 506 LLHEMQILGLKPSEITFASLIDVCKGSAKVI-----LGLQIHCAIVKRGLLCGSEFLGTS 560
Query: 158 LINFYGKFRCLEDADFVFSQLKRHNTVV-WTAKIVNNCREGHFHQVFNDFKEMGRERIKK 216
L+ Y + L DA+ +FS+ ++V WTA I + + N ++EM I
Sbjct: 561 LLGMYMDSQRLADANILFSEFSSLKSIVMWTALISGHIQNECSDVALNLYREMRDNNISP 620
Query: 217 NSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERV 276
+ TF +VL+AC + + GR++H+ I G + DE LVDMY KC ++ + +V
Sbjct: 621 DQATFVTVLQACALLSSLHD-GREIHSLIFHTGFDLDELTSSALVDMYAKCGDVKSSVQV 679
Query: 277 FELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
FE + KK++ SWN+M+VG+ +NG A K M S I + + ACS
Sbjct: 680 FEELATKKDVISWNSMIVGFAKNGYAKCALKVFDEMTQSCITPDDVTFLGVLTACS 735
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 73/281 (25%), Positives = 138/281 (49%), Gaps = 12/281 (4%)
Query: 43 KPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAE 102
+ ++ + L+ M+ C D ARQ+FD + ++ W M+ Y + LF +
Sbjct: 249 ESSIYVASSLINMYGKCQMPDDARQVFDAISQKNMIVWNAMLGVYSQNGFLSNVMELFLD 308
Query: 103 MMKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINF 161
M+ + P + +L C C +E+G+Q+H + K + N+ + +LI+
Sbjct: 309 MISCG------IHPDEFTYTSILSTCACFEYLEVGRQLHSAIIKKRFTSNLFVNNALIDM 362
Query: 162 YGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTF 221
Y K L++A F + + + W A IV +E F+ F+ M + I + +
Sbjct: 363 YAKAGALKEAGKHFEHMTYRDHISWNAIIVGYVQEEVEAGAFSLFRRMILDGIVPDEVSL 422
Query: 222 SSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIV 281
+S+L ACG + G+Q H VK+GLE++ + L+DMY KC ++DA + + +
Sbjct: 423 ASILSACGNIKVL-EAGQQFHCLSVKLGLETNLFAGSSLIDMYSKCGDIKDAHKTYSSM- 480
Query: 282 DKKNIASWNAMLVGY-IRNGLYVEATKFLYLMKASGIQIQE 321
++++ S NA++ GY ++N E+ L+ M+ G++ E
Sbjct: 481 PERSVVSVNALIAGYALKNT--KESINLLHEMQILGLKPSE 519
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 138/308 (44%), Gaps = 22/308 (7%)
Query: 36 IRKRVNIKPTLLFLNRLLL-MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQ 94
I+KR + LF+N L+ M+ G L A + F+ M RD SW +IVGYV
Sbjct: 345 IKKRFT---SNLFVNNALIDMYAKAGALKEAGKHFEHMTYRDHISWNAIIVGYVQEEVEA 401
Query: 95 ECITLFAEMMKRKKGHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNIS 153
+LF M+ + P + + +L AC +E G+Q H L KLG N+
Sbjct: 402 GAFSLFRRMILDG------IVPDEVSLASILSACGNIKVLEAGQQFHCLSVKLGLETNLF 455
Query: 154 LTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKI----VNNCREGHFHQVFNDFKEM 209
SLI+ Y K ++DA +S + + V A I + N +E N EM
Sbjct: 456 AGSSLIDMYSKCGDIKDAHKTYSSMPERSVVSVNALIAGYALKNTKES-----INLLHEM 510
Query: 210 GRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLE-SDEYVQCGLVDMYGKCR 268
+K + TF+S++ C G G Q+H IVK GL E++ L+ MY +
Sbjct: 511 QILGLKPSEITFASLIDVCKG-SAKVILGLQIHCAIVKRGLLCGSEFLGTSLLGMYMDSQ 569
Query: 269 LLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLR 328
L DA +F K+I W A++ G+I+N A M+ + I ++ +
Sbjct: 570 RLADANILFSEFSSLKSIVMWTALISGHIQNECSDVALNLYREMRDNNISPDQATFVTVL 629
Query: 329 IACSSISA 336
AC+ +S+
Sbjct: 630 QACALLSS 637
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 69/255 (27%), Positives = 115/255 (45%), Gaps = 20/255 (7%)
Query: 52 LLLMHVSCGQLDTARQLFDEMP-LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGH 110
LL M++ +L A LF E L+ W +I G++ + L+ EM
Sbjct: 561 LLGMYMDSQRLADANILFSEFSSLKSIVMWTALISGHIQNECSDVALNLYREMRDNNISP 620
Query: 111 MLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
F V VL+AC ++ G+++H L+F G + + +L++ Y K ++
Sbjct: 621 DQATF-----VTVLQACALLSSLHDGREIHSLIFHTGFDLDELTSSALVDMYAKCGDVKS 675
Query: 171 ADFVFSQLK-RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC- 228
+ VF +L + + + W + IV + G+ F EM + I + TF VL AC
Sbjct: 676 SVQVFEELATKKDVISWNSMIVGFAKNGYAKCALKVFDEMTQSCITPDDVTFLGVLTACS 735
Query: 229 --GGVDDDGNCGRQMHANIVKI-GLES--DEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
G V + GRQ+ +V G+E D Y C +VD+ G+ L++AE + + +
Sbjct: 736 HAGWVYE----GRQIFDVMVNYYGIEPRVDHYA-C-MVDLLGRWGFLKEAEEFIDKLEVE 789
Query: 284 KNIASWNAMLVGYIR 298
N W A L+G R
Sbjct: 790 PNAMIW-ANLLGACR 803
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 87/216 (40%), Gaps = 38/216 (17%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQ--LKR 180
L AC N+ LG+ VH + K G G+LI+ Y K L A +F+
Sbjct: 53 TLSACAKLQNLHLGRAVHSCVIKSGLESTSFCQGALIHLYAKCNSLTCARTIFASAPFPH 112
Query: 181 HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQ 240
+TV WTA I + G H+ + F +M R + +VL A
Sbjct: 113 LHTVSWTALISGYVQAGLPHEALHIFDKM-RNSAVPDQVALVTVLNA------------- 158
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
Y+ G +D C+L + ++ + +N+ +WN M+ G+ +
Sbjct: 159 --------------YISLGKLD--DACQLFQ------QMPIPIRNVVAWNVMISGHAKTA 196
Query: 301 LYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
Y EA F + M G++ S + + A +S++A
Sbjct: 197 HYEEALAFFHQMSKHGVKSSRSTLASVLSAIASLAA 232
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 62/128 (48%), Gaps = 5/128 (3%)
Query: 201 QVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGL 260
Q + F G + +TF+ L AC + + + GR +H+ ++K GLES + Q L
Sbjct: 33 QFYASFMNSGH---SPDQFTFAVTLSACAKLQNL-HLGRAVHSCVIKSGLESTSFCQGAL 88
Query: 261 VDMYGKCRLLRDAERVF-ELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQI 319
+ +Y KC L A +F + SW A++ GY++ GL EA M+ S +
Sbjct: 89 IHLYAKCNSLTCARTIFASAPFPHLHTVSWTALISGYVQAGLPHEALHIFDKMRNSAVPD 148
Query: 320 QESLINDL 327
Q +L+ L
Sbjct: 149 QVALVTVL 156
>gi|302775606|ref|XP_002971220.1| hypothetical protein SELMODRAFT_95215 [Selaginella moellendorffii]
gi|300161202|gb|EFJ27818.1| hypothetical protein SELMODRAFT_95215 [Selaginella moellendorffii]
Length = 492
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 90/325 (27%), Positives = 153/325 (47%), Gaps = 10/325 (3%)
Query: 16 LIKECTFQKDSAGAFELLNHIRK-RVNIKPTLLFLNRLLLMHVSC-GQLDTARQLFDEMP 73
++ C+ + A E+ H R + ++ LL M+ C G AR +FD M
Sbjct: 64 VLDSCSGARGLAAGLEI--HARMVEGGFESDVVACTALLNMYGRCSGDARAARAVFDGME 121
Query: 74 LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI------IVCVLKAC 127
+RD SW ++V Y A +E + L+ +M+ + VF + + V+ C
Sbjct: 122 VRDLVSWNAIVVVYSQKAQCEEAVKLYRQMLLQGVQPDEFVFSSRVKLDRVGYTSVIDTC 181
Query: 128 VCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWT 187
+E G+++H + K G ++++ +L+N YGK LEDA VF+ ++ + WT
Sbjct: 182 TSLGALEEGRRIHSQIAKQGLETDVAVGSALVNMYGKCGDLEDARAVFAGIEGKDRCAWT 241
Query: 188 AKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVK 247
+ + + G + F F+ M E K + T SVL C + G+ +H++I
Sbjct: 242 SMLGAYAQHGDGDRAFQVFQTMDLEGEKSDPITLISVLSVCSDKSSALSQGKAIHSSISG 301
Query: 248 IGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATK 307
GLE D V L+DMY C LR A F+ I K ++ W+A++ GY ++G + E+T
Sbjct: 302 SGLELDGLVATALIDMYATCGSLRTARDFFDAIQAKGDVVLWSAIISGYSQHGDWEESTT 361
Query: 308 FLYLMKASGIQIQESLINDLRIACS 332
LM+ G++ I + A S
Sbjct: 362 LFRLMQLEGLEPDNRTITSVLSAFS 386
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 130/264 (49%), Gaps = 31/264 (11%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+ CG++D AR++F+ + R+ SW +MI Y ++ +F ++ + V
Sbjct: 1 MYGKCGKVDEARRVFEAILDRNVFSWNLMIAAYARHGHSRDAWEVF------RRIDLEGV 54
Query: 115 FPAWII-VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED--- 170
P+ + + VL +C + G ++H + + G ++ +L+N YG RC D
Sbjct: 55 KPSRVTFLGVLDSCSGARGLAAGLEIHARMVEGGFESDVVACTALLNMYG--RCSGDARA 112
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK---- 226
A VF ++ + V W A +V ++ + +++M + ++ + + FSS +K
Sbjct: 113 ARAVFDGMEVRDLVSWNAIVVVYSQKAQCEEAVKLYRQMLLQGVQPDEFVFSSRVKLDRV 172
Query: 227 ----------ACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERV 276
+ G +++ GR++H+ I K GLE+D V LV+MYGKC L DA V
Sbjct: 173 GYTSVIDTCTSLGALEE----GRRIHSQIAKQGLETDVAVGSALVNMYGKCGDLEDARAV 228
Query: 277 FELIVDKKNIASWNAMLVGYIRNG 300
F I + K+ +W +ML Y ++G
Sbjct: 229 FAGI-EGKDRCAWTSMLGAYAQHG 251
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 75/161 (46%), Gaps = 1/161 (0%)
Query: 161 FYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYT 220
YGK +++A VF + N W I R GH + F+ + E +K + T
Sbjct: 1 MYGKCGKVDEARRVFEAILDRNVFSWNLMIAAYARHGHSRDAWEVFRRIDLEGVKPSRVT 60
Query: 221 FSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELI 280
F VL +C G G ++HA +V+ G ESD L++MYG+C A R
Sbjct: 61 FLGVLDSCSGARGLA-AGLEIHARMVEGGFESDVVACTALLNMYGRCSGDARAARAVFDG 119
Query: 281 VDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQE 321
++ +++ SWNA++V Y + EA K M G+Q E
Sbjct: 120 MEVRDLVSWNAIVVVYSQKAQCEEAVKLYRQMLLQGVQPDE 160
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 71/289 (24%), Positives = 126/289 (43%), Gaps = 20/289 (6%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRV---NIKPTLLFLNRLLLMHVSCGQLDTARQLF 69
YT +I CT S GA E I ++ ++ + + L+ M+ CG L+ AR +F
Sbjct: 174 YTSVIDTCT----SLGALEEGRRIHSQIAKQGLETDVAVGSALVNMYGKCGDLEDARAVF 229
Query: 70 DEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVC 129
+ +D +W M+ Y D +F M + + + + VC K+
Sbjct: 230 AGIEGKDRCAWTSMLGAYAQHGDGDRAFQVFQTMDLEGEKSDPITLISVLSVCSDKSSA- 288
Query: 130 TMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA-DFVFSQLKRHNTVVWTA 188
+ GK +H + G + + +LI+ Y L A DF + + + V+W+A
Sbjct: 289 ---LSQGKAIHSSISGSGLELDGLVATALIDMYATCGSLRTARDFFDAIQAKGDVVLWSA 345
Query: 189 KIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--GGVDDDGN--CGRQMHAN 244
I + G + + F+ M E ++ ++ T +SVL A GG+ D G + A
Sbjct: 346 IISGYSQHGDWEESTTLFRLMQLEGLEPDNRTITSVLSAFSHGGLVDQATEWFGTMVEAC 405
Query: 245 IVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
+K + D Y+ C L+D+ G+ L AE V + + K + +W +L
Sbjct: 406 DMKPAI--DHYM-C-LIDLLGRAGCLEAAELVMKRMPCKADTVAWTTLL 450
>gi|224137958|ref|XP_002322694.1| predicted protein [Populus trichocarpa]
gi|222867324|gb|EEF04455.1| predicted protein [Populus trichocarpa]
Length = 586
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 93/306 (30%), Positives = 147/306 (48%), Gaps = 8/306 (2%)
Query: 8 ITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQ 67
I D Y L+ EC ++ + H+ K + P L RL++++ C L AR
Sbjct: 8 IKFDGYNMLLNECVNKRAVREGQRVHAHMIKTCYLPPVYLS-TRLIILYTKCECLGCARH 66
Query: 68 LFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKAC 127
+FDEM R+ SW MI GY E + LF +M++ F VL +C
Sbjct: 67 VFDEMRERNVVSWTAMISGYSQRGFASEALHLFVQMLRSDTEPNEFTFAT-----VLSSC 121
Query: 128 VCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWT 187
ELG+Q+H +FK +I + SL++ Y K + +A VF L + V T
Sbjct: 122 TGFSGFELGRQIHSHIFKRNYENHIFVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCT 181
Query: 188 AKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVK 247
A I + G + F + RE + N T++S+L A G+ + G+Q+H+++++
Sbjct: 182 AIISGYAQLGLDEEALELFCRLQREGMSSNYVTYASLLTALSGLAALDH-GKQVHSHVLR 240
Query: 248 IGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATK 307
L +Q L+DMY KC L A ++F + + + SWNAMLVGY ++G +E K
Sbjct: 241 CELPFYVVLQNSLIDMYSKCGNLNYARKIFNNM-PVRTVISWNAMLVGYSKHGKGIEVVK 299
Query: 308 FLYLMK 313
LM+
Sbjct: 300 LFKLMR 305
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 105/214 (49%), Gaps = 2/214 (0%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
+L CV + G++VH + K + L+ LI Y K CL A VF +++ N
Sbjct: 16 LLNECVNKRAVREGQRVHAHMIKTCYLPPVYLSTRLIILYTKCECLGCARHVFDEMRERN 75
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
V WTA I + G + + F +M R + N +TF++VL +C G GRQ+H
Sbjct: 76 VVSWTAMISGYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSSCTGFSGF-ELGRQIH 134
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
++I K E+ +V L+DMY K + +A VFE + ++++ S A++ GY + GL
Sbjct: 135 SHIFKRNYENHIFVGSSLLDMYAKAGRIHEARGVFECL-PERDVVSCTAIISGYAQLGLD 193
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
EA + ++ G+ L A S ++A
Sbjct: 194 EEALELFCRLQREGMSSNYVTYASLLTALSGLAA 227
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 72/292 (24%), Positives = 131/292 (44%), Gaps = 26/292 (8%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
+ ++ CT ++ +HI KR N + + + LL M+ G++ AR +F+ +
Sbjct: 114 FATVLSSCTGFSGFELGRQIHSHIFKR-NYENHIFVGSSLLDMYAKAGRIHEARGVFECL 172
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN 132
P RD S +I GY + +E + LF + + + + + +L A
Sbjct: 173 PERDVVSCTAIISGYAQLGLDEEALELFCRLQREGMSSNYVTYAS-----LLTALSGLAA 227
Query: 133 MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192
++ GKQVH + + + L SLI+ Y K L A +F+ + + W A +V
Sbjct: 228 LDHGKQVHSHVLRCELPFYVVLQNSLIDMYSKCGNLNYARKIFNNMPVRTVISWNAMLVG 287
Query: 193 NCREGHFHQVFNDFKEMGRE-RIKKNSYTFSSVLKAC--GGVDDDG--------NCGRQM 241
+ G +V FK M E ++K +S TF +VL C GG++D G N G ++
Sbjct: 288 YSKHGKGIEVVKLFKLMREENKVKPDSVTFLAVLSGCSHGGLEDKGLEMFDEMMNGGDEI 347
Query: 242 HANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
A I E+ C ++D+ G+ + +A + + + + A W ++L
Sbjct: 348 EAGI--------EHYGC-VIDLLGRAGRVEEAFELIKKMPFEPTAAIWGSLL 390
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 69/160 (43%), Gaps = 8/160 (5%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R + ++ N L+ M+ CG L+ AR++F+ MP+R SW M+VGY E +
Sbjct: 240 RCELPFYVVLQNSLIDMYSKCGNLNYARKIFNNMPVRTVISWNAMLVGYSKHGKGIEVVK 299
Query: 99 LFAEMMKRKKGHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGS--SRNISLT 155
LF M + K V P + + VL C + G ++ + G I
Sbjct: 300 LFKLMREENK-----VKPDSVTFLAVLSGCSHGGLEDKGLEMFDEMMNGGDEIEAGIEHY 354
Query: 156 GSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCR 195
G +I+ G+ +E+A + ++ T ++ CR
Sbjct: 355 GCVIDLLGRAGRVEEAFELIKKMPFEPTAAIWGSLLGACR 394
>gi|356518523|ref|XP_003527928.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g08210-like [Glycine max]
Length = 686
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 93/329 (28%), Positives = 154/329 (46%), Gaps = 44/329 (13%)
Query: 28 GAFELLNHIRK------RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWA 81
G F+ + H + ++ + + LN ++ ++ C + D AR LFDEMP R+ S+
Sbjct: 14 GRFQAIKHAKSLHSLIIKLGLSNHIFLLNSIISVYAKCSRFDDARTLFDEMPHRNIVSFT 73
Query: 82 VMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVH 140
M+ + + E +TL+ M++ K V P ++ VLKAC ++ELG VH
Sbjct: 74 TMVSAFTNSGRPHEALTLYNHMLESKT-----VQPNQFLYSAVLKACGLVGDVELGMLVH 128
Query: 141 GLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFH 200
+ + + L +L++ Y K L DA VF ++ N+ W I+ + ++G
Sbjct: 129 QHVSEARLEFDTVLMNALLDMYVKCGSLMDAKRVFHEIPCKNSTSWNTLILGHAKQGLMR 188
Query: 201 QVFNDFKEMGR------------------------------ERIKKNSYTFSSVLKACGG 230
FN F +M + +K +++TF LKAC G
Sbjct: 189 DAFNLFDQMPEPDLVSWNSIIAGLADNASPHALQFLSMMHGKGLKLDAFTFPCALKAC-G 247
Query: 231 VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD-KKNIASW 289
+ + GRQ+H I+K GLE Y L+DMY C+LL +A ++F+ +++A W
Sbjct: 248 LLGELTMGRQIHCCIIKSGLECSCYCISSLIDMYSNCKLLDEAMKIFDKNSPLAESLAVW 307
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
N+ML GY+ NG + A + M SG Q
Sbjct: 308 NSMLSGYVANGDWWRALGMIACMHHSGAQ 336
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 82/285 (28%), Positives = 137/285 (48%), Gaps = 9/285 (3%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDE-MPLRD-FNSWAVMIVGYVDVADYQECITLFAEMMKR 106
++ L+ M+ +C LD A ++FD+ PL + W M+ GYV D+ + + A M
Sbjct: 274 ISSLIDMYSNCKLLDEAMKIFDKNSPLAESLAVWNSMLSGYVANGDWWRALGMIACMH-- 331
Query: 107 KKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166
H F ++ LK C+ N+ L QVHGL+ G + + LI+ Y K
Sbjct: 332 ---HSGAQFDSYTFSIALKVCIYFDNLRLASQVHGLIITRGYELDHVVGSILIDLYAKQG 388
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
+ A +F +L + V W++ IV R G VF+ F +M ++ + + S VLK
Sbjct: 389 NINSALRLFERLPNKDVVAWSSLIVGCARLGLGTLVFSLFMDMVHLDLEIDHFVLSIVLK 448
Query: 227 ACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
+ + G+Q+H+ +K G ES+ + L DMY KC + DA +F+ + + +
Sbjct: 449 VSSSLASLQS-GKQIHSFCLKKGYESERVITTALTDMYAKCGEIEDALALFDCLYEIDTM 507
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
SW ++VG +NG +A L+ M SG + + I + AC
Sbjct: 508 -SWTGIIVGCAQNGRADKAISILHKMIESGTKPNKITILGVLTAC 551
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 80/317 (25%), Positives = 141/317 (44%), Gaps = 30/317 (9%)
Query: 12 MYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDE 71
+Y+ ++K C D + H+ + ++ + +N LL M+V CG L A+++F E
Sbjct: 107 LYSAVLKACGLVGDVELGMLVHQHVSE-ARLEFDTVLMNALLDMYVKCGSLMDAKRVFHE 165
Query: 72 MPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK---------------RKKGHML---- 112
+P ++ SW +I+G+ ++ LF +M + H L
Sbjct: 166 IPCKNSTSWNTLILGHAKQGLMRDAFNLFDQMPEPDLVSWNSIIAGLADNASPHALQFLS 225
Query: 113 ------LVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166
L A+ C LKAC + +G+Q+H + K G + SLI+ Y +
Sbjct: 226 MMHGKGLKLDAFTFPCALKACGLLGELTMGRQIHCCIIKSGLECSCYCISSLIDMYSNCK 285
Query: 167 CLEDADFVFSQLKR--HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
L++A +F + + VW + + G + + M + +SYTFS
Sbjct: 286 LLDEAMKIFDKNSPLAESLAVWNSMLSGYVANGDWWRALGMIACMHHSGAQFDSYTFSIA 345
Query: 225 LKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
LK C D+ Q+H I+ G E D V L+D+Y K + A R+FE + + K
Sbjct: 346 LKVCIYFDNL-RLASQVHGLIITRGYELDHVVGSILIDLYAKQGNINSALRLFERLPN-K 403
Query: 285 NIASWNAMLVGYIRNGL 301
++ +W++++VG R GL
Sbjct: 404 DVVAWSSLIVGCARLGL 420
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 103/209 (49%), Gaps = 3/209 (1%)
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
I L+ C ++ K +H L+ KLG S +I L S+I+ Y K +DA +F ++
Sbjct: 6 IQLALRCCGRFQAIKHAKSLHSLIIKLGLSNHIFLLNSIISVYAKCSRFDDARTLFDEMP 65
Query: 180 RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRER-IKKNSYTFSSVLKACGGVDDDGNCG 238
N V +T + G H+ + M + ++ N + +S+VLKACG V D G
Sbjct: 66 HRNIVSFTTMVSAFTNSGRPHEALTLYNHMLESKTVQPNQFLYSAVLKACGLVGDV-ELG 124
Query: 239 RQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIR 298
+H ++ + LE D + L+DMY KC L DA+RVF I KN SWN +++G+ +
Sbjct: 125 MLVHQHVSEARLEFDTVLMNALLDMYVKCGSLMDAKRVFHEI-PCKNSTSWNTLILGHAK 183
Query: 299 NGLYVEATKFLYLMKASGIQIQESLINDL 327
GL +A M + S+I L
Sbjct: 184 QGLMRDAFNLFDQMPEPDLVSWNSIIAGL 212
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 61/246 (24%), Positives = 113/246 (45%), Gaps = 13/246 (5%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ ++ G +++A +LF+ +P +D +W+ +IVG + +LF +M+ H+
Sbjct: 380 LIDLYAKQGNINSALRLFERLPNKDVVAWSSLIVGCARLGLGTLVFSLFMDMV-----HL 434
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
L +++ VLK +++ GKQ+H K G +T +L + Y K +EDA
Sbjct: 435 DLEIDHFVLSIVLKVSSSLASLQSGKQIHSFCLKKGYESERVITTALTDMYAKCGEIEDA 494
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--- 228
+F L +T+ WT IV + G + + +M K N T VL AC
Sbjct: 495 LALFDCLYEIDTMSWTGIIVGCAQNGRADKAISILHKMIESGTKPNKITILGVLTACRHA 554
Query: 229 GGVDDDGNCGRQMHANIVKIGLES-DEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
G V++ + + + GL E+ C +VD++ K ++A + + K +
Sbjct: 555 GLVEEAWTIFKSIE---TEHGLTPCPEHYNC-MVDIFAKAGRFKEARNLINDMPFKPDKT 610
Query: 288 SWNAML 293
W ++L
Sbjct: 611 IWCSLL 616
>gi|224122892|ref|XP_002318942.1| predicted protein [Populus trichocarpa]
gi|222857318|gb|EEE94865.1| predicted protein [Populus trichocarpa]
Length = 707
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 89/291 (30%), Positives = 140/291 (48%), Gaps = 9/291 (3%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
LN L+ M+ CG L+ + LF+ ++ +W+ +I GY D + + LF++M
Sbjct: 251 LNALVTMYAKCGNLNYSLMLFEMCSDKNAITWSALITGYSQAGDSHKALKLFSKM----- 305
Query: 109 GHMLLVFPA-WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
H P+ + +V VLKAC +E GKQ HG L K G I +L++ Y KF
Sbjct: 306 -HYAGFVPSEFTLVGVLKACSDVAAIEEGKQTHGYLLKSGYETQIYTATALVDMYAKFGF 364
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
DA F L + V+WT+ I + G + + + M +I N T +SVLKA
Sbjct: 365 TGDARKGFDFLLEPDLVLWTSIIAGYVQNGKNEEALSMYGRMQMRKILPNELTMASVLKA 424
Query: 228 CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
C + G+Q+HA +K GL + ++ L MY KC L + +F ++ +++I
Sbjct: 425 CSNLAALEQ-GKQIHARTIKYGLGPELSIRSALSTMYAKCGSLEEGVLIFRRML-QRDIV 482
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASK 338
SWNAM+ G +NG EA + M+ G + + ACS + K
Sbjct: 483 SWNAMISGLSQNGHGREALELFEEMRLEGTKPDHITFVTVLSACSHMGIVK 533
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/272 (29%), Positives = 132/272 (48%), Gaps = 7/272 (2%)
Query: 65 ARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVL 124
AR+LFD MP R+ SW MI GY +E + +F +M+ +G++ ++ VL
Sbjct: 166 ARKLFDRMPERNLVSWTTMISGYASKQMAKEALGVFG-LMRLVEGNL----NEFVFTSVL 220
Query: 125 KACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTV 184
A VC ++ GKQVH ++ K G +S+ +L+ Y K L + +F N +
Sbjct: 221 SALVCPEFVDSGKQVHCVVVKNGVLEFVSVLNALVTMYAKCGNLNYSLMLFEMCSDKNAI 280
Query: 185 VWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHAN 244
W+A I + G H+ F +M + +T VLKAC V G+Q H
Sbjct: 281 TWSALITGYSQAGDSHKALKLFSKMHYAGFVPSEFTLVGVLKACSDVAAIEE-GKQTHGY 339
Query: 245 IVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVE 304
++K G E+ Y LVDMY K DA + F+ +++ ++ W +++ GY++NG E
Sbjct: 340 LLKSGYETQIYTATALVDMYAKFGFTGDARKGFDFLLE-PDLVLWTSIIAGYVQNGKNEE 398
Query: 305 ATKFLYLMKASGIQIQESLINDLRIACSSISA 336
A M+ I E + + ACS+++A
Sbjct: 399 ALSMYGRMQMRKILPNELTMASVLKACSNLAA 430
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 91/336 (27%), Positives = 140/336 (41%), Gaps = 17/336 (5%)
Query: 7 PITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTAR 66
P Y LI+ QK L HI K + N L+ + CG L A+
Sbjct: 5 PQNRSFYNLLIQYAD-QKSLKKGQILHAHIIKIPYLSSCNYLANNLIKFYAKCGHLHGAK 63
Query: 67 QLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLL----VFPAWIIVC 122
+F+ + ++ S+ +I G L E+ +R + +L FP
Sbjct: 64 LVFENLKHKNVVSYNCLIHGLSHNGSKGSNFVL--ELFRRMIANNILPDAHTFPGVFTAA 121
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
L C + +QVH L K S ++ + SL+NFY K C+ +A +F ++ N
Sbjct: 122 ALNLG-CNFD---ARQVHVLGIKTASIDDVFVGSSLVNFYCKVGCVFEARKLFDRMPERN 177
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA--CGGVDDDGNCGRQ 240
V WT I + + F M N + F+SVL A C D G+Q
Sbjct: 178 LVSWTTMISGYASKQMAKEALGVFGLMRLVEGNLNEFVFTSVLSALVCPEFVDS---GKQ 234
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
+H +VK G+ V LV MY KC L + +FE+ D KN +W+A++ GY + G
Sbjct: 235 VHCVVVKNGVLEFVSVLNALVTMYAKCGNLNYSLMLFEMCSD-KNAITWSALITGYSQAG 293
Query: 301 LYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+A K M +G E + + ACS ++A
Sbjct: 294 DSHKALKLFSKMHYAGFVPSEFTLVGVLKACSDVAA 329
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 68/256 (26%), Positives = 107/256 (41%), Gaps = 33/256 (12%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ G AR+ FD + D W +I GYV +E ++++ M RK
Sbjct: 355 LVDMYAKFGFTGDARKGFDFLLEPDLVLWTSIIAGYVQNGKNEEALSMYGRMQMRK---- 410
Query: 112 LLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
+ P + + VLKAC +E GKQ+H K G +S+ +L Y K LE+
Sbjct: 411 --ILPNELTMASVLKACSNLAALEQGKQIHARTIKYGLGPELSIRSALSTMYAKCGSLEE 468
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
+F ++ + + V W A I + GH + F+EM E K + TF +VL AC
Sbjct: 469 GVLIFRRMLQRDIVSWNAMISGLSQNGHGREALELFEEMRLEGTKPDHITFVTVLSACS- 527
Query: 231 VDDDGNCGRQMHANIVKIG-------------LESDEYVQCGLVDMYGKCRLLRDAERVF 277
H IVK G + E+ C +VD+ + L +A+
Sbjct: 528 -----------HMGIVKRGWAYFNMMFDEFCLVPRVEHYAC-MVDVLSRAGKLNEAKEFI 575
Query: 278 ELIVDKKNIASWNAML 293
E + + W +L
Sbjct: 576 ESAIIDHGMCLWRILL 591
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 39/96 (40%), Gaps = 10/96 (10%)
Query: 35 HIRK-RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADY 93
H R + + P L + L M+ CG L+ +F M RD SW MI G
Sbjct: 438 HARTIKYGLGPELSIRSALSTMYAKCGSLEEGVLIFRRMLQRDIVSWNAMISGLSQNGHG 497
Query: 94 QECITLFAEMM--KRKKGHMLLVFPAWIIVCVLKAC 127
+E + LF EM K H+ V VL AC
Sbjct: 498 REALELFEEMRLEGTKPDHI-------TFVTVLSAC 526
>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
pumila]
Length = 710
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 89/287 (31%), Positives = 147/287 (51%), Gaps = 17/287 (5%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ + S G +++A ++FDE+P++D SW I GY + +Y+E + LF +MMK
Sbjct: 175 LITGYASRGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTN---- 230
Query: 112 LLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
V P +V VL AC + ++ELG+QVH + G N+ + +LI+ Y K LE
Sbjct: 231 --VRPDESTMVTVLSACAQSGSIELGRQVHSWINDHGFGXNLKIVNALIDLYSKCGELET 288
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC-- 228
A +F L + + W I + + F++M R K N T S+L AC
Sbjct: 289 ACGLFQGLSNKDVISWNTLIGGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILSACAH 348
Query: 229 -GGVDDDGNCGRQMHANIVK--IGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
G +D GR +H I K G+ + ++ L+DMY KC + A++VF+ +++ ++
Sbjct: 349 LGAID----IGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQVFDSMLN-RS 403
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
++SWNAM+ G+ +G A M+ +GI+ + L ACS
Sbjct: 404 LSSWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACS 450
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/312 (24%), Positives = 132/312 (42%), Gaps = 44/312 (14%)
Query: 62 LDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIV 121
L A +FD + W M G+ +D + L+ M+ + L+ ++
Sbjct: 53 LPYAISVFDTIQEPXLLIWNTMFRGHALSSDPVSALKLYVCMVS-----LGLLPNSYTFP 107
Query: 122 CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFV------- 174
+LK+C + + G+Q+HG + K G ++ + SLI+ Y + LEDA V
Sbjct: 108 FLLKSCAKSXAFKEGQQLHGQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHR 167
Query: 175 ------------------------FSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMG 210
F ++ + V W A I G++ + FK+M
Sbjct: 168 DVVSYTALITGYASRGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMM 227
Query: 211 RERIKKNSYTFSSVLKAC---GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKC 267
+ ++ + T +VL AC G ++ GRQ+H+ I G + + L+D+Y KC
Sbjct: 228 KTNVRPDESTMVTVLSACAQSGSIE----LGRQVHSWINDHGFGXNLKIVNALIDLYSKC 283
Query: 268 RLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDL 327
L A +F+ + + K++ SWN ++ GY LY EA M SG + + + +
Sbjct: 284 GELETACGLFQGLSN-KDVISWNTLIGGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSI 342
Query: 328 RIACSSISASKI 339
AC+ + A I
Sbjct: 343 LSACAHLGAIDI 354
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/276 (25%), Positives = 129/276 (46%), Gaps = 18/276 (6%)
Query: 27 AGAFELLNHIRKRVN---IKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVM 83
+G+ EL + +N L +N L+ ++ CG+L+TA LF + +D SW +
Sbjct: 248 SGSIELGRQVHSWINDHGFGXNLKIVNALIDLYSKCGELETACGLFQGLSNKDVISWNTL 307
Query: 84 IVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLL 143
I GY + Y+E + LF +M++ + + ++ +L AC +++G+ +H +
Sbjct: 308 IGGYTHMNLYKEALLLFQDMLRSGEKPNDVT-----MLSILSACAHLGAIDIGRWIHVYI 362
Query: 144 FKL--GSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQ 201
K G + SL SLI+ Y K +E A VF + + W A I G +
Sbjct: 363 DKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANA 422
Query: 202 VFNDFKEMGRERIKKNSYTFSSVLKAC--GGVDDDGNCGRQMHANIVKIG--LESDEYVQ 257
F+ F M + I+ + TF +L AC G+ D GR + ++ + + E+
Sbjct: 423 AFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLD---LGRHIFRSMTRDYKLMPKLEHYG 479
Query: 258 CGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
C ++D+ G L ++AE++ + + + W ++L
Sbjct: 480 C-MIDLXGHSGLFKEAEKMINTMEMEPDGVIWCSLL 514
>gi|225438557|ref|XP_002276001.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g39530-like [Vitis vinifera]
Length = 825
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 80/254 (31%), Positives = 134/254 (52%), Gaps = 7/254 (2%)
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI 119
G ++ AR +FD++ + +W +I GY + LFA+M + +V ++
Sbjct: 178 GNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETN-----VVPDRYV 232
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
+ VL AC +E GKQ+H + + G+ ++S+ LI+FY K ++ +F Q+
Sbjct: 233 VSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMV 292
Query: 180 RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGR 239
N + WT I + + F EM R K + + +SVL +CG + GR
Sbjct: 293 VKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGS-REALEQGR 351
Query: 240 QMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRN 299
Q+HA +K LESDE+V+ GL+DMY K LL DA++VF+++ + +N+ S+NAM+ GY
Sbjct: 352 QVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAE-QNVISYNAMIEGYSSQ 410
Query: 300 GLYVEATKFLYLMK 313
EA + + M+
Sbjct: 411 EKLSEALELFHEMR 424
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 79/258 (30%), Positives = 133/258 (51%), Gaps = 10/258 (3%)
Query: 61 QLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWI 119
++D AR +FD+MP ++ +W+ M+ Y +E + +F ++ ++ H P ++
Sbjct: 77 RVDNARVVFDKMPHKNLITWSSMVSMYSQQGYSEEALMVFVDLQRKSGEH-----PNEFV 131
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
+ V++AC +E G Q+HG + + G +++ + SLI+FY K +E+A VF QL
Sbjct: 132 LASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGNIEEARLVFDQLS 191
Query: 180 RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDD-DGNCG 238
V WT I + G F +M + + Y SSVL AC ++ +G G
Sbjct: 192 EKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEG--G 249
Query: 239 RQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIR 298
+Q+HA +++ G E D V L+D Y KC ++ ++F+ +V KNI SW M+ GY++
Sbjct: 250 KQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMV-VKNIISWTTMISGYMQ 308
Query: 299 NGLYVEATKFLYLMKASG 316
N EA K M G
Sbjct: 309 NSFDWEAMKLFGEMNRLG 326
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 90/319 (28%), Positives = 147/319 (46%), Gaps = 13/319 (4%)
Query: 20 CTFQKDSAGAFELLNHIRK------RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMP 73
CT S G+ E L R+ + N++ N L+ M+ L A+++FD M
Sbjct: 334 CTSVLTSCGSREALEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMA 393
Query: 74 LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNM 133
++ S+ MI GY E + LF EM R LL F V +L +
Sbjct: 394 EQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTF-----VSLLGVSASLFAL 448
Query: 134 ELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNN 193
EL KQ+HGL+ K G S ++ +LI+ Y K ++DA VF ++ + VVW A
Sbjct: 449 ELSKQIHGLIIKFGVSLDLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFGY 508
Query: 194 CREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESD 253
+ + + + R K N +TF++++ A + + G+Q H +VK+GL+
Sbjct: 509 TQHLENEEALKLYSTLQFSRQKPNEFTFAALITAASNLASLRH-GQQFHNQLVKMGLDFC 567
Query: 254 EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMK 313
+V LVDMY KC + +A ++F + +++ WN+M+ + ++G EA M
Sbjct: 568 PFVTNALVDMYAKCGSIEEARKMFNSSI-WRDVVCWNSMISTHAQHGEAEEALGMFREMM 626
Query: 314 ASGIQIQESLINDLRIACS 332
GIQ + ACS
Sbjct: 627 KEGIQPNYVTFVAVLSACS 645
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 81/289 (28%), Positives = 132/289 (45%), Gaps = 9/289 (3%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
+N L+ + C ++ R+LFD+M +++ SW MI GY+ + E + LF EM +
Sbjct: 268 VNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNR--- 324
Query: 109 GHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
L P + VL +C +E G+QVH K + + LI+ Y K
Sbjct: 325 ---LGWKPDGFACTSVLTSCGSREALEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNL 381
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
L DA VF + N + + A I + + F EM + TF S+L
Sbjct: 382 LIDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGV 441
Query: 228 CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
+ +Q+H I+K G+ D + L+D+Y KC ++DA VFE + ++K+I
Sbjct: 442 SASLFAL-ELSKQIHGLIIKFGVSLDLFAGSALIDVYSKCSYVKDARHVFEEM-NEKDIV 499
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
WNAM GY ++ EA K ++ S + E L A S++++
Sbjct: 500 VWNAMFFGYTQHLENEEALKLYSTLQFSRQKPNEFTFAALITAASNLAS 548
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 97/199 (48%), Gaps = 7/199 (3%)
Query: 137 KQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCRE 196
K +HG + G + L LIN K +++A VF ++ N + W++ + ++
Sbjct: 47 KIIHGQIIVSGLQSDTFLANILINVCSKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQ 106
Query: 197 GHFHQVFNDFKEMGRERIK-KNSYTFSSVLKACG--GVDDDGNCGRQMHANIVKIGLESD 253
G+ + F ++ R+ + N + +SV++AC GV + G Q+H +V+ G + D
Sbjct: 107 GYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEK---GAQLHGFVVRSGFDQD 163
Query: 254 EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMK 313
YV L+D Y K + +A VF+ + +K + +W ++ GY + G + + M+
Sbjct: 164 VYVGTSLIDFYSKNGNIEEARLVFDQLSEKTAV-TWTTIIAGYTKCGRSAVSLELFAQMR 222
Query: 314 ASGIQIQESLINDLRIACS 332
+ + +++ + ACS
Sbjct: 223 ETNVVPDRYVVSSVLSACS 241
>gi|359495864|ref|XP_002266254.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g65570-like [Vitis vinifera]
Length = 751
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 103/338 (30%), Positives = 172/338 (50%), Gaps = 18/338 (5%)
Query: 4 LCLPIT---TDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCG 60
LC+ T T +Y+ LI++C K ++ +H KR +L N+L+ ++ CG
Sbjct: 68 LCITETIQSTKLYSSLIQQCIGIKSITDITKIQSHALKR-GFHHSLG--NKLIDAYLKCG 124
Query: 61 QLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWI 119
+ AR++FDE+P R +W MI Y+ +E I ++ M+ + P +
Sbjct: 125 SVVYARKVFDEVPHRHIVAWNSMIASYIRNGRSKEAIDIYQRMVPDG------ILPDEFT 178
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSS-RNISLTGSLINFYGKFRCLEDADFVFSQL 178
V KA + G++ HG LG N+ + +L++ Y KF + DA V Q+
Sbjct: 179 FSSVFKAFSDLGLVHEGQRAHGQSVVLGVGVSNVFVGSALVDMYAKFGKMRDARLVSDQV 238
Query: 179 KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCG 238
+ V++TA IV G + F+ M ++ I+ N YT SSVL CG ++D G
Sbjct: 239 VGKDVVLFTALIVGYSHHGEDGESLQVFRNMTKKGIEANEYTLSSVLVCCGNLEDL-TSG 297
Query: 239 RQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIR 298
R +H IVK GLES Q L+ MY +C L+ D+ +VF+ ++ N +W +++VG ++
Sbjct: 298 RLIHGLIVKAGLESAVASQTSLLTMYYRCGLVDDSLKVFKQFIN-PNQVTWTSVIVGLVQ 356
Query: 299 NGL-YVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
NG + KF ++++S +L + LR ACSS++
Sbjct: 357 NGREEIALLKFRQMLRSSITPNSFTLSSVLR-ACSSLA 393
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 81/267 (30%), Positives = 136/267 (50%), Gaps = 7/267 (2%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ G++ AR + D++ +D + +IVGY + E + +F M K+
Sbjct: 218 LVDMYAKFGKMRDARLVSDQVVGKDVVLFTALIVGYSHHGEDGESLQVFRNMTKKG---- 273
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+ + + VL C ++ G+ +HGL+ K G ++ SL+ Y + ++D+
Sbjct: 274 -IEANEYTLSSVLVCCGNLEDLTSGRLIHGLIVKAGLESAVASQTSLLTMYYRCGLVDDS 332
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
VF Q N V WT+ IV + G F++M R I NS+T SSVL+AC +
Sbjct: 333 LKVFKQFINPNQVTWTSVIVGLVQNGREEIALLKFRQMLRSSITPNSFTLSSVLRACSSL 392
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
G+Q+HA ++K GL+ D+YV L+D YGKC A VF +++ ++ S N+
Sbjct: 393 AMLEQ-GKQIHAIVMKFGLDIDKYVGAALIDFYGKCGSTEIARSVFNGLLE-VDVVSVNS 450
Query: 292 MLVGYIRNGLYVEATKFLYLMKASGIQ 318
M+ Y +NG EA + MK +G++
Sbjct: 451 MIYSYAQNGFGHEALQLFSGMKDTGLE 477
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 66/247 (26%), Positives = 118/247 (47%), Gaps = 16/247 (6%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL M+ CG +D + ++F + + +W +IVG V + + F +M++
Sbjct: 319 LLTMYYRCGLVDDSLKVFKQFINPNQVTWTSVIVGLVQNGREEIALLKFRQMLRSS---- 374
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+ ++ + VL+AC +E GKQ+H ++ K G + + +LI+FYGK E A
Sbjct: 375 -ITPNSFTLSSVLRACSSLAMLEQGKQIHAIVMKFGLDIDKYVGAALIDFYGKCGSTEIA 433
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--G 229
VF+ L + V + I + + G H+ F M ++ N+ T+ VL AC
Sbjct: 434 RSVFNGLLEVDVVSVNSMIYSYAQNGFGHEALQLFSGMKDTGLEPNNVTWLGVLSACNNA 493
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS- 288
G+ ++G N I L D Y C +VD+ G+ L++A E+++++ NI+
Sbjct: 494 GLLEEGCHIFSSARNSGNIELTKDHYA-C-MVDLLGRAGRLKEA----EMLINQVNISDV 547
Query: 289 --WNAML 293
W +L
Sbjct: 548 VIWRTLL 554
>gi|255541646|ref|XP_002511887.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549067|gb|EEF50556.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 478
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 92/315 (29%), Positives = 155/315 (49%), Gaps = 13/315 (4%)
Query: 28 GAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGY 87
G ++ H+ K + + L N++L ++V C + A +LFDEM +R+ +W +I G
Sbjct: 32 GGIQVHAHLVK-LGLYNVLSLQNKILDVYVKCKEFKDAHKLFDEMTVRNVVTWNTVICGL 90
Query: 88 VDVAD-YQECI----TLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGL 142
V+ + Y+ C+ + F +M+ + G F + + +AC+ +E+G+Q+H L
Sbjct: 91 VNCGNNYKPCLYTGFSYFKKMLLDEVG-----FDPITLNVLFRACLELNGIEIGRQLHCL 145
Query: 143 LFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQV 202
+ KLG N + +L++ YGK +A VF + + V+W + +
Sbjct: 146 VVKLGFQLNCLVNSALVDLYGKCGLATEARCVFDDVMYKDLVLWNVMLSCYALNSLAEEA 205
Query: 203 FNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVD 262
FK M E + + +TFSS+L +C + GRQ+H I K+ + D V G+V+
Sbjct: 206 LTVFKLMQLENLIGDGFTFSSMLNSCATL-GSWELGRQIHGLICKLSFDLDILVASGIVN 264
Query: 263 MYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQES 322
MY K + DA + F+ + KN+ SWN M+V Y R G EA K L M E
Sbjct: 265 MYAKNEYIEDARKAFDCMT-AKNVVSWNTMVVAYGRQGDGKEAMKLLKEMLLEDFAPDEL 323
Query: 323 LINDLRIACSSISAS 337
+ + +C S+SAS
Sbjct: 324 TLASILSSCGSVSAS 338
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/279 (27%), Positives = 131/279 (46%), Gaps = 9/279 (3%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
++ CG AR +FD++ +D W VM+ Y + +E +T+F M L+
Sbjct: 164 LYGKCGLATEARCVFDDVMYKDLVLWNVMLSCYALNSLAEEALTVFKLMQLEN-----LI 218
Query: 115 FPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFV 174
+ +L +C + ELG+Q+HGL+ KL +I + ++N Y K +EDA
Sbjct: 219 GDGFTFSSMLNSCATLGSWELGRQIHGLICKLSFDLDILVASGIVNMYAKNEYIEDARKA 278
Query: 175 FSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDD 234
F + N V W +V R+G + KEM E + T +S+L +CG V
Sbjct: 279 FDCMTAKNVVSWNTMVVAYGRQGDGKEAMKLLKEMLLEDFAPDELTLASILSSCGSV--S 336
Query: 235 GNCG-RQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
+C Q+H +VK GL+S + +++ Y KC A + F V + N+ +W +++
Sbjct: 337 ASCEIMQVHVYVVKFGLQSFLSIGNAMINAYSKCGRAASALKSFN-SVPEPNLVTWTSLI 395
Query: 294 VGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
GY N L + K M ++G++ + + ACS
Sbjct: 396 SGYAFNSLPKDGIKMFEKMLSAGVRPDQIAFLGVLSACS 434
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 105/209 (50%), Gaps = 15/209 (7%)
Query: 124 LKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNT 183
LK T ++ G QVH L KLG +SL +++ Y K + +DA +F ++ N
Sbjct: 21 LKLSATTGFLQGGIQVHAHLVKLGLYNVLSLQNKILDVYVKCKEFKDAHKLFDEMTVRNV 80
Query: 184 VVWTAKIVN--NCREGH---FHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDG-NC 237
V W I NC + + F+ FK+M + + + T + + +AC ++ +G
Sbjct: 81 VTWNTVICGLVNCGNNYKPCLYTGFSYFKKMLLDEVGFDPITLNVLFRAC--LELNGIEI 138
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYI 297
GRQ+H +VK+G + + V LVD+YGKC L +A VF+ ++ K++ WN ML Y
Sbjct: 139 GRQLHCLVVKLGFQLNCLVNSALVDLYGKCGLATEARCVFDDVM-YKDLVLWNVMLSCYA 197
Query: 298 RNGLYVEATKFLYLMKASGIQIQESLIND 326
N L EA LM+ E+LI D
Sbjct: 198 LNSLAEEALTVFKLMQL------ENLIGD 220
>gi|113205417|gb|AAU90328.2| Pentatricopeptide repeat domain containing protein, putative
[Solanum demissum]
Length = 819
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 86/287 (29%), Positives = 140/287 (48%), Gaps = 27/287 (9%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
+ N LL + +D A+ LFDEMP D S+ ++I GY Y++ LF K
Sbjct: 279 IFVANALLDFYSKHDYIDLAKNLFDEMPELDGVSYNIIITGYAWNGQYEKSFDLF----K 334
Query: 106 RKKGHML--LVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYG 163
R +G FP +L +N+ +G+Q H + + + +L++ Y
Sbjct: 335 RLQGTSFDRKNFP---FATMLSVAAIELNLSMGRQTHAQAVVTTAVSEVQVGNALVDMYA 391
Query: 164 KFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSS 223
K EDA+ +F+ L N+V WTA I ++G + FKEM RE + + TF+S
Sbjct: 392 KCEKFEDANRIFANLAYRNSVPWTAIISIYVQKGFHEEALKMFKEMNRENVHGDQATFAS 451
Query: 224 VLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
LKA + + G+Q+H++++++GL S + LVDMY C ++DA VF+ + D
Sbjct: 452 TLKASANL-ASVSLGKQLHSSVIRLGLLSSVFSGSVLVDMYANCGSMKDAIEVFKEMPD- 509
Query: 284 KNIASWNAMLVGY----------------IRNGLYVEATKFLYLMKA 314
+NI WNA++ Y I +GLY ++ FL ++ A
Sbjct: 510 RNIVCWNALISAYSQNGDAEATFSSFADMIESGLYPDSVSFLSVLTA 556
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 81/299 (27%), Positives = 139/299 (46%), Gaps = 13/299 (4%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R +L+ N L+ + LD A QLF EMP +D S+ VMI GY +E +
Sbjct: 171 RFGFSASLIVFNSLVDSYCKTCCLDIASQLFSEMPTKDSVSFNVMITGYTKYGFREEALK 230
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
LF +M +M + +L V + ++ G+Q+HGL K +I + +L
Sbjct: 231 LFMQMR-----NMDFQPSGFTFAAMLGMSVGSEDVIFGQQIHGLAIKTSYVWDIFVANAL 285
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
++FY K ++ A +F ++ + V + I G + + F+ FK + + +
Sbjct: 286 LDFYSKHDYIDLAKNLFDEMPELDGVSYNIIITGYAWNGQYEKSFDLFKRLQGTSFDRKN 345
Query: 219 YTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE 278
+ F+++L + ++ + + GRQ HA V S+ V LVDMY KC DA R+F
Sbjct: 346 FPFATML-SVAAIELNLSMGRQTHAQAVVTTAVSEVQVGNALVDMYAKCEKFEDANRIFA 404
Query: 279 LIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISAS 337
+ +N W A++ Y++ G + EA K M +E++ D S++ AS
Sbjct: 405 NLA-YRNSVPWTAIISIYVQKGFHEEALKMFKEMN------RENVHGDQATFASTLKAS 456
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 120/256 (46%), Gaps = 11/256 (4%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR-- 106
+N ++ +V L AR+LF+ M R+ SW +MI GY +E L+ EM +
Sbjct: 80 VNMMVSGYVKSRNLFRARELFESMFSRNEVSWTIMIGGYSQNNQPKEAFNLYTEMCRSGV 139
Query: 107 KKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166
K H+ +L T ++ Q+H + + G S ++ + SL++ Y K
Sbjct: 140 KPDHITFA-------TLLSGFDDTTTLKEVLQIHSHIIRFGFSASLIVFNSLVDSYCKTC 192
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
CL+ A +FS++ ++V + I + G + F +M + + +TF+++L
Sbjct: 193 CLDIASQLFSEMPTKDSVSFNVMITGYTKYGFREEALKLFMQMRNMDFQPSGFTFAAMLG 252
Query: 227 ACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
G +D G+Q+H +K D +V L+D Y K + A+ +F+ + + +
Sbjct: 253 MSVG-SEDVIFGQQIHGLAIKTSYVWDIFVANALLDFYSKHDYIDLAKNLFDEMPELDGV 311
Query: 287 ASWNAMLVGYIRNGLY 302
S+N ++ GY NG Y
Sbjct: 312 -SYNIIITGYAWNGQY 326
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 82/180 (45%), Gaps = 5/180 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ C + + A ++F + R+ W +I YV ++E + +F EM +
Sbjct: 384 NALVDMYAKCEKFEDANRIFANLAYRNSVPWTAIISIYVQKGFHEEALKMFKEMNRENVH 443
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
F + LKA ++ LGKQ+H + +LG ++ L++ Y ++
Sbjct: 444 GDQATFAS-----TLKASANLASVSLGKQLHSSVIRLGLLSSVFSGSVLVDMYANCGSMK 498
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
DA VF ++ N V W A I + G F+ F +M + +S +F SVL AC
Sbjct: 499 DAIEVFKEMPDRNIVCWNALISAYSQNGDAEATFSSFADMIESGLYPDSVSFLSVLTACS 558
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 81/178 (45%), Gaps = 6/178 (3%)
Query: 143 LFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQV 202
LF RN S +++ Y K R L A +F + N V WT I + +
Sbjct: 68 LFDEMPYRNTSSVNMMVSGYVKSRNLFRARELFESMFSRNEVSWTIMIGGYSQNNQPKEA 127
Query: 203 FNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGR--QMHANIVKIGLESDEYVQCGL 260
FN + EM R +K + TF+++L G DD Q+H++I++ G + V L
Sbjct: 128 FNLYTEMCRSGVKPDHITFATLL---SGFDDTTTLKEVLQIHSHIIRFGFSASLIVFNSL 184
Query: 261 VDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
VD Y K L A ++F + K ++ S+N M+ GY + G EA K M+ Q
Sbjct: 185 VDSYCKTCCLDIASQLFSEMPTKDSV-SFNVMITGYTKYGFREEALKLFMQMRNMDFQ 241
>gi|357440579|ref|XP_003590567.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355479615|gb|AES60818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1212
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 105/340 (30%), Positives = 158/340 (46%), Gaps = 17/340 (5%)
Query: 6 LPITT-----DMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCG 60
LP TT Y+ ++ C K +L H K N ++ + + M+ CG
Sbjct: 37 LPTTTRFPLQQAYSQALELCASHKALPQGQQLHAHFLKTQNYLDSVFLDTKFVHMYGKCG 96
Query: 61 QLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWII 120
A ++FD+M R +W MI V Y E I L+ EM FP
Sbjct: 97 SFYDAVKVFDKMSERTIFTWNAMIGACVSAGRYVEAIELYKEMRVLGVSLDAFTFP---- 152
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQ--L 178
CVLKAC LG ++HG+ K G + + +LI Y K L A +F +
Sbjct: 153 -CVLKACGAFKERRLGCEIHGVAVKCGYGGFVFVCNALIAMYAKCGDLGGARVLFDSGLM 211
Query: 179 KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCG 238
++ + V W + I + EG + + F+ M ++ N+YTF S L+AC G G
Sbjct: 212 EKDDPVSWNSIISAHVGEGESLEALSLFRRMQEVGVESNTYTFVSALQACEG-PTFIKIG 270
Query: 239 RQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIR 298
R +HA I+K +D YV L+ MY C + DAERVF+ ++ K+ SWN +L G ++
Sbjct: 271 RGIHAVILKSNHFTDVYVSNALIAMYANCGQMEDAERVFKSML-FKDCVSWNTLLSGMVQ 329
Query: 299 NGLYVEATKFLYLMKASGIQI-QESLINDLRIACSSISAS 337
N +Y +A M+ SG + Q S++N IA S SA+
Sbjct: 330 NDMYSDAINHFQDMQDSGQKPDQVSVLN--MIAASGRSAN 367
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 80/338 (23%), Positives = 161/338 (47%), Gaps = 12/338 (3%)
Query: 6 LPITTDMYT--CLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLD 63
L ++ D +T C++K C K+ E+ + + + + N L+ M+ CG L
Sbjct: 142 LGVSLDAFTFPCVLKACGAFKERRLGCEI-HGVAVKCGYGGFVFVCNALIAMYAKCGDLG 200
Query: 64 TARQLFDE--MPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIV 121
AR LFD M D SW +I +V + E ++LF R+ + + + V
Sbjct: 201 GARVLFDSGLMEKDDPVSWNSIISAHVGEGESLEALSLF-----RRMQEVGVESNTYTFV 255
Query: 122 CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH 181
L+AC +++G+ +H ++ K ++ ++ +LI Y +EDA+ VF +
Sbjct: 256 SALQACEGPTFIKIGRGIHAVILKSNHFTDVYVSNALIAMYANCGQMEDAERVFKSMLFK 315
Query: 182 NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQM 241
+ V W + + + N F++M K + + +++ A G + G ++
Sbjct: 316 DCVSWNTLLSGMVQNDMYSDAINHFQDMQDSGQKPDQVSVLNMI-AASGRSANLLAGMEV 374
Query: 242 HANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGL 301
HA +K G++S+ ++ L+DMYGKC ++ FE + + K++ SW ++ GY +N
Sbjct: 375 HAYAIKHGIDSNMHIGNSLIDMYGKCCCVKYMGSAFEYMPE-KDLISWTTIIAGYAQNEC 433
Query: 302 YVEATKFLYLMKASGIQIQESLINDLRIACSSISASKI 339
+++A L ++ + + +I + +ACS + + K+
Sbjct: 434 HLDALNLLRKVQLEKMDVDPMMIGSILLACSGLKSEKL 471
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/290 (25%), Positives = 141/290 (48%), Gaps = 10/290 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ +CGQ++ A ++F M +D SW ++ G V Y + I F +M +
Sbjct: 290 NALIAMYANCGQMEDAERVFKSMLFKDCVSWNTLLSGMVQNDMYSDAINHFQDMQDSGQK 349
Query: 110 HMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
P + ++ ++ A + N+ G +VH K G N+ + SLI+ YGK C+
Sbjct: 350 ------PDQVSVLNMIAASGRSANLLAGMEVHAYAIKHGIDSNMHIGNSLIDMYGKCCCV 403
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+ F + + + WT I + N +++ E++ + S+L AC
Sbjct: 404 KYMGSAFEYMPEKDLISWTTIIAGYAQNECHLDALNLLRKVQLEKMDVDPMMIGSILLAC 463
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
G+ + +++H ++K GL +D +Q +V++YG+ L+ A VFE I + K+I S
Sbjct: 464 SGLKSE-KLIKEIHGYVLKGGL-ADILIQNAIVNVYGELALVDYARHVFESI-NSKDIVS 520
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASK 338
W +M+ + NGL +EA + + + I+ + + A +++S+ K
Sbjct: 521 WTSMITCCVHNGLAIEALELFNSLIETNIEPDLITLVSVLYAAAALSSLK 570
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 115/250 (46%), Gaps = 9/250 (3%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
+L N ++ ++ +D AR +F+ + +D SW MI V E + LF +++
Sbjct: 487 ILIQNAIVNVYGELALVDYARHVFESINSKDIVSWTSMITCCVHNGLAIEALELFNSLIE 546
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
L+ +V VL A +++ GK++HG L + G + SL++ Y +
Sbjct: 547 TNIEPDLIT-----LVSVLYAAAALSSLKKGKEIHGFLIRKGFFLEGLIANSLVDMYARC 601
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
+E+A +F+ +K+ + ++WT+ I N G + F +M E + + TF ++L
Sbjct: 602 GTMENARNIFNYVKQRDLILWTSMINANGMHGCGKDAIDLFSKMTDENVLPDHITFLALL 661
Query: 226 KAC--GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
AC G+ +G ++ N K+ + Y C LVD+ + L +A + +
Sbjct: 662 YACSHSGLVVEGKQHFEIMKNEYKLEPWPEHYA-C-LVDLLARSNSLEEAYHFVRNMPIE 719
Query: 284 KNIASWNAML 293
+ W A+L
Sbjct: 720 PSAEVWCALL 729
>gi|357485423|ref|XP_003612999.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355514334|gb|AES95957.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 676
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 102/326 (31%), Positives = 159/326 (48%), Gaps = 14/326 (4%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
YT LI + T +K L HI K ++ F ++L+ ++ C + AR+LFDEM
Sbjct: 4 YTSLIAQFTNKKSLTTLKSLHTHILKSGSLFS--FFGHKLIDGYIKCSVITEARKLFDEM 61
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTM 131
P R +W MI +V +E I L+ M+ V P A+ + KA
Sbjct: 62 PNRHIVTWNSMISSHVSRGKTKEAIELYDNMLFEG------VLPDAYTFSAIFKAFSEMG 115
Query: 132 NMELGKQVHGLLFKLG--SSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAK 189
G++ HGL LG S TG +++ Y KF ++DA FVF ++ + V++TA
Sbjct: 116 VSREGQKAHGLAVVLGFEVSDGFVATG-IVDMYAKFGKMKDARFVFDRVLDKDVVLFTAL 174
Query: 190 IVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIG 249
IV + G + F++M RIK N YT +SVL +CG + D N G+ +H +VK G
Sbjct: 175 IVGYNQRGLDGEALEVFEDMVGSRIKPNEYTLASVLVSCGNLGDLVN-GKLIHGLVVKSG 233
Query: 250 LESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFL 309
LES Q L+ MY KC ++ D+ +VF + ++ +W + +VG ++NG A
Sbjct: 234 LESVVASQTSLLTMYSKCNMVEDSIKVFNSLAYASHV-TWTSFIVGLVQNGREEIALSMF 292
Query: 310 YLMKASGIQIQESLINDLRIACSSIS 335
M I + + ACSS++
Sbjct: 293 REMIRCSISPNHFTFSSILHACSSLA 318
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 84/280 (30%), Positives = 140/280 (50%), Gaps = 9/280 (3%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+ G++ AR +FD + +D + +IVGY E + +F +M+ + +
Sbjct: 146 MYAKFGKMKDARFVFDRVLDKDVVLFTALIVGYNQRGLDGEALEVFEDMVGSR------I 199
Query: 115 FP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADF 173
P + + VL +C ++ GK +HGL+ K G ++ SL+ Y K +ED+
Sbjct: 200 KPNEYTLASVLVSCGNLGDLVNGKLIHGLVVKSGLESVVASQTSLLTMYSKCNMVEDSIK 259
Query: 174 VFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDD 233
VF+ L + V WT+ IV + G + F+EM R I N +TFSS+L AC +
Sbjct: 260 VFNSLAYASHVTWTSFIVGLVQNGREEIALSMFREMIRCSISPNHFTFSSILHACSSLAM 319
Query: 234 DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
G Q+HA VK+G++ ++YV L+ +YGKC + A VFE + + ++ S N M+
Sbjct: 320 L-EAGEQIHAVTVKLGVDGNKYVDAALIHLYGKCGNVEKARSVFESLTE-LDVVSINTMI 377
Query: 294 VGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSS 333
Y +NG EA + MK G + + +AC++
Sbjct: 378 YAYAQNGFGHEALELFERMKKLGHKPNVVTFISILLACNN 417
>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
Length = 926
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 94/306 (30%), Positives = 147/306 (48%), Gaps = 13/306 (4%)
Query: 32 LLNHIRKRVNIKPTLL-----FLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVG 86
LL + +IK L F N LL M+ CG L++A ++F+ M + SW MI G
Sbjct: 369 LLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITG 428
Query: 87 YVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKL 146
YV I LF EM R +V + + +L AC N++ GK VH + +
Sbjct: 429 YVREGLSDGAIKLFDEMKSRG-----VVPDVYAVTSILNACAINGNLKSGKIVHDYIREN 483
Query: 147 GSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDF 206
N ++ +L + Y K ++DA VFS +K+ + + W I + ++ F
Sbjct: 484 NLETNSFVSNALTDMYAKCGSMKDAHDVFSHMKKKDVISWNTMIGGYTKNSLPNEALTLF 543
Query: 207 KEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGK 266
EM RE K + T + +L AC + + GR++H ++ G D+YV +VDMY K
Sbjct: 544 AEMQRES-KPDGTTVACILPACASLAAL-DKGREIHGYALRNGYSEDKYVTNAVVDMYVK 601
Query: 267 CRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLIND 326
C LL A +F++I + K++ SW M+ GY +G EA M+ +GI+ E
Sbjct: 602 CGLLVLARSLFDMIPN-KDLVSWTVMIAGYGMHGYGSEAINTFNQMRMTGIEPDEVSFIS 660
Query: 327 LRIACS 332
+ ACS
Sbjct: 661 ILYACS 666
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 90/294 (30%), Positives = 140/294 (47%), Gaps = 19/294 (6%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
+N L+ + ++ A++LFDE+ RD SW MI GYV I +F +M
Sbjct: 289 VNSLISFYFVGRKVRCAQKLFDELTDRDVISWNSMISGYVKNGLDDRGIEIFIKM----- 343
Query: 109 GHMLLVFPAWI----IVCVLKACVCTMNMELGKQVHGLLFKLGS-SRNISLTGSLINFYG 163
LVF I +V V AC + LGK +H K + R + +L++ Y
Sbjct: 344 ----LVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLDREVRFNNTLLDMYS 399
Query: 164 KFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSS 223
K L A VF ++ V WT+ I REG F EM + + Y +S
Sbjct: 400 KCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTS 459
Query: 224 VLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
+L AC ++ + G+ +H I + LE++ +V L DMY KC ++DA VF + K
Sbjct: 460 ILNAC-AINGNLKSGKIVHDYIRENNLETNSFVSNALTDMYAKCGSMKDAHDVFSHM-KK 517
Query: 284 KNIASWNAMLVGYIRNGLYVEA-TKFLYLMKASGIQIQESLINDLRIACSSISA 336
K++ SWN M+ GY +N L EA T F + + S + + + + AC+S++A
Sbjct: 518 KDVISWNTMIGGYTKNSLPNEALTLFAEMQRES--KPDGTTVACILPACASLAA 569
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 88/294 (29%), Positives = 142/294 (48%), Gaps = 20/294 (6%)
Query: 51 RLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGH 110
+L+ M+V CG L R +FD++ W +MI Y +Y E I LF +M++
Sbjct: 190 KLVFMYVKCGDLKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLE----- 244
Query: 111 MLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
L + P ++ +LK +E G+QVHGL+ KLG + ++ SLI+FY R +
Sbjct: 245 -LGIKPNSYTFSSILKCFAAVARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVR 303
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A +F +L + + W + I + G + F +M + + T +V AC
Sbjct: 304 CAQKLFDELTDRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACA 363
Query: 230 GVDDDGN--CGRQMHANIVKIG-LESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
+ G G+ +H+ +K L+ + L+DMY KC L A RVFE + D+K +
Sbjct: 364 NI---GTLLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERM-DEKTV 419
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKIN 340
SW +M+ GY+R GL A K MK+ G+ + D+ S ++A IN
Sbjct: 420 VSWTSMITGYVREGLSDGAIKLFDEMKSRGV------VPDVYAVTSILNACAIN 467
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 76/301 (25%), Positives = 131/301 (43%), Gaps = 31/301 (10%)
Query: 8 ITTDMY--TCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTA 65
+ D+Y T ++ C + + ++IR+ N++ N L M+ CG + A
Sbjct: 450 VVPDVYAVTSILNACAINGNLKSGKIVHDYIREN-NLETNSFVSNALTDMYAKCGSMKDA 508
Query: 66 RQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLK 125
+F M +D SW MI GY + E +TLFAEM + K + C+L
Sbjct: 509 HDVFSHMKKKDVISWNTMIGGYTKNSLPNEALTLFAEMQRESKPD------GTTVACILP 562
Query: 126 ACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVV 185
AC ++ G+++HG + G S + +T ++++ Y K L A +F + + V
Sbjct: 563 ACASLAALDKGREIHGYALRNGYSEDKYVTNAVVDMYVKCGLLVLARSLFDMIPNKDLVS 622
Query: 186 WTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--GGVDDDG-------- 235
WT I G+ + N F +M I+ + +F S+L AC G+ D+G
Sbjct: 623 WTVMIAGYGMHGYGSEAINTFNQMRMTGIEPDEVSFISILYACSHSGLLDEGWKIFNIMK 682
Query: 236 -NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLV 294
C Q+ N+ E+ C +VD+ + L A + + + K + W A+L
Sbjct: 683 KEC--QIEPNL--------EHYAC-MVDLLARTGNLVKAHKFIKAMPIKPDATIWGALLC 731
Query: 295 G 295
G
Sbjct: 732 G 732
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 110/215 (51%), Gaps = 8/215 (3%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
+L+ C ++ G++V ++ G + L L+ Y K L++ VF +L
Sbjct: 156 ILQLCAERKSIRDGRRVRSIIESSGVMIDGILGVKLVFMYVKCGDLKEGRMVFDKLSESK 215
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK---ACGGVDDDGNCGR 239
+W I G++ + N FK+M IK NSYTFSS+LK A V++ GR
Sbjct: 216 IFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTFSSILKCFAAVARVEE----GR 271
Query: 240 QMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRN 299
Q+H I K+G S V L+ Y R +R A+++F+ + D +++ SWN+M+ GY++N
Sbjct: 272 QVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDELTD-RDVISWNSMISGYVKN 330
Query: 300 GLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
GL + M G+ I + + ++ +AC++I
Sbjct: 331 GLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANI 365
>gi|413944176|gb|AFW76825.1| putative pentatricopeptide repeat family protein [Zea mays]
Length = 823
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 86/282 (30%), Positives = 136/282 (48%), Gaps = 7/282 (2%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL M+ CG ++ A +F+ +P D W+ +I Y ++ +F MM+
Sbjct: 290 LLDMYAKCGDIEDAHAIFEMIPHDDVILWSFLISRYAQSCQNEQAFEMFLRMMRS----- 344
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+V + + VL+AC +ELG+Q+H L KLG + + +L++ Y K R +E++
Sbjct: 345 FVVPNEFSLSGVLQACANIAFLELGEQIHNLAIKLGYESELFVGNALMDMYAKCRNMENS 404
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
+FS L+ N V W IV C+ G + F EM + TFSSVL+AC
Sbjct: 405 LEIFSSLQDANEVSWNTIIVGYCQSGFAEDALSVFHEMRAAHMLSTQVTFSSVLRACANT 464
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
+ Q+H+ I K +D V L+D Y KC +RDA +VFE IV+ ++ SWN+
Sbjct: 465 SSIKH-AVQIHSLIEKSTFNNDTIVCNSLIDTYAKCGFIRDALKVFESIVE-CDVVSWNS 522
Query: 292 MLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSS 333
++ Y +G A + M S I+ + L C S
Sbjct: 523 IISAYALHGRATNALELFDRMNKSDIKANDVTFVSLLSVCGS 564
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 80/282 (28%), Positives = 139/282 (49%), Gaps = 11/282 (3%)
Query: 59 CGQLDTARQLFDEMPLRDFNSWAVMIVGYV--DVADYQECITLFAEMMKRKKGHMLLVFP 116
CG + AR +FD + +D +W M+ Y D+ +Y + F++M R G F
Sbjct: 196 CGAVCHARCVFDGIVGKDAVTWTAMVSCYSENDIPEY--ALNTFSKM--RMTGFKPNPF- 250
Query: 117 AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFS 176
++ LKA VC + LGK +HG K + G+L++ Y K +EDA +F
Sbjct: 251 --VLTSALKAAVCLSSALLGKGIHGCSVKTLYDTEPHVGGALLDMYAKCGDIEDAHAIFE 308
Query: 177 QLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGN 236
+ + ++W+ I + Q F F M R + N ++ S VL+AC +
Sbjct: 309 MIPHDDVILWSFLISRYAQSCQNEQAFEMFLRMMRSFVVPNEFSLSGVLQACANI-AFLE 367
Query: 237 CGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGY 296
G Q+H +K+G ES+ +V L+DMY KCR + ++ +F + D + SWN ++VGY
Sbjct: 368 LGEQIHNLAIKLGYESELFVGNALMDMYAKCRNMENSLEIFSSLQDANEV-SWNTIIVGY 426
Query: 297 IRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASK 338
++G +A + M+A+ + + + + AC++ S+ K
Sbjct: 427 CQSGFAEDALSVFHEMRAAHMLSTQVTFSSVLRACANTSSIK 468
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 87/338 (25%), Positives = 153/338 (45%), Gaps = 11/338 (3%)
Query: 1 MDNLCLPITTDMYTC--LIKECTFQKDSAGAFELLNHIRKRVNIKPTLLF-LNRLLLMHV 57
+ +L LP D Y C ++ C + D+ + + +R + F N LL +
Sbjct: 35 LASLALP-KLDSYACARFLQRCIARGDARAGRAVHARVVQRGGVAQLDTFCANVLLNFYA 93
Query: 58 SCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPA 117
G L TAR+LFD MP R+ S+ ++ GY +++E + LF + +++GH + F
Sbjct: 94 KLGPLATARRLFDGMPERNRVSFVTLMQGYALRGEFEEALELFRRL--QREGHEVNHF-- 149
Query: 118 WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQ 177
++ +LK V L +H KLG RN + +LI+ Y + A VF
Sbjct: 150 -VLTTILKVLVTMDAPGLACGIHACACKLGHDRNAFVGTALIDAYSLCGAVCHARCVFDG 208
Query: 178 LKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC 237
+ + V WTA + N F +M K N + +S LKA +
Sbjct: 209 IVGKDAVTWTAMVSCYSENDIPEYALNTFSKMRMTGFKPNPFVLTSALKAAVCL-SSALL 267
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYI 297
G+ +H VK +++ +V L+DMY KC + DA +FE+I ++ W+ ++ Y
Sbjct: 268 GKGIHGCSVKTLYDTEPHVGGALLDMYAKCGDIEDAHAIFEMI-PHDDVILWSFLISRYA 326
Query: 298 RNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
++ +A + M S + E ++ + AC++I+
Sbjct: 327 QSCQNEQAFEMFLRMMRSFVVPNEFSLSGVLQACANIA 364
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/270 (25%), Positives = 121/270 (44%), Gaps = 19/270 (7%)
Query: 31 ELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDV 90
E ++++ ++ + L N L+ M+ C ++ + ++F + + SW +IVGY
Sbjct: 370 EQIHNLAIKLGYESELFVGNALMDMYAKCRNMENSLEIFSSLQDANEVSWNTIIVGYCQS 429
Query: 91 ADYQECITLFAEMMKRKKGHML---LVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLG 147
++ +++F EM + HML + F + VL+AC T +++ Q+H L+ K
Sbjct: 430 GFAEDALSVFHEM---RAAHMLSTQVTFSS-----VLRACANTSSIKHAVQIHSLIEKST 481
Query: 148 SSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFK 207
+ + + SLI+ Y K + DA VF + + V W + I G F
Sbjct: 482 FNNDTIVCNSLIDTYAKCGFIRDALKVFESIVECDVVSWNSIISAYALHGRATNALELFD 541
Query: 208 EMGRERIKKNSYTFSSVLKACG--GVDDDGNC--GRQMHANIVKIGLESDEYVQCGLVDM 263
M + IK N TF S+L CG G+ + G M + +K S E+ C +V +
Sbjct: 542 RMNKSDIKANDVTFVSLLSVCGSTGLVNQGLWLFNSMMMDHRIK---PSMEHYTC-IVRL 597
Query: 264 YGKCRLLRDAERVFELIVDKKNIASWNAML 293
G+ L DA + I + W A+L
Sbjct: 598 LGRAGRLTDALKFIGDIPSTPSPMVWRALL 627
>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Glycine max]
Length = 747
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 103/378 (27%), Positives = 168/378 (44%), Gaps = 79/378 (20%)
Query: 31 ELLNHIRKRVNI---------KPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWA 81
ELL H R I P + LN L+ + ++ AR++FD+MP R+ SW
Sbjct: 20 ELLKHCRDTKKIHCHIIKAFRNPEIFLLNNLVSAYAKFDRITYARRVFDQMPQRNLYSWN 79
Query: 82 VMIVGYVDVADYQECITLFAEMMKRK-------------KGHMLLVFPAW---------- 118
++ Y +A E +F M R +G +L A+
Sbjct: 80 TLLSSYSKLACLPEMERVFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYNLMLYNGPFN 139
Query: 119 ---------IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK----- 164
+I+ + CV LG QVHG + K G + + L++ Y K
Sbjct: 140 LNRIALSTMLILASKQGCV-----HLGLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVF 194
Query: 165 ------------------------FRC--LEDADFVFSQLKRHNTVVWTAKIVNNCREGH 198
RC +ED+ +F ++ +++ WTA I + G
Sbjct: 195 CARQAFDEMPEKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGL 254
Query: 199 FHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQC 258
+ + F+EM E ++ + YTF SVL ACGGV G+Q+HA I++ + + +V
Sbjct: 255 DREAIDLFREMRLENLEMDQYTFGSVLTACGGVMALQE-GKQVHAYIIRTDYQDNIFVGS 313
Query: 259 GLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
LVDMY KC+ ++ AE VF + + KN+ SW AMLVGY +NG EA K M+ +GI+
Sbjct: 314 ALVDMYCKCKSIKSAETVFRKM-NCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIE 372
Query: 319 IQESLINDLRIACSSISA 336
+ + + +C+++++
Sbjct: 373 PDDFTLGSVISSCANLAS 390
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 84/289 (29%), Positives = 136/289 (47%), Gaps = 11/289 (3%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
++ N L+ + C +++ +RQLF +M +D SW MI G+ +E I LF EM
Sbjct: 208 VVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREMRL 267
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
L + VL AC M ++ GKQVH + + NI + +L++ Y K
Sbjct: 268 EN-----LEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKC 322
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
+ ++ A+ VF ++ N V WTA +V + G+ + F +M I+ + +T SV+
Sbjct: 323 KSIKSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFTLGSVI 382
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELI--VDK 283
+C + G Q H + GL S V LV +YGKC + D+ R+F + VD+
Sbjct: 383 SSCANLASLEE-GAQFHCRALVSGLISFITVSNALVTLYGKCGSIEDSHRLFSEMSYVDE 441
Query: 284 KNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
SW A++ GY + G E + M A G + + + ACS
Sbjct: 442 ---VSWTALVSGYAQFGKANETLRLFESMLAHGFKPDKVTFIGVLSACS 487
>gi|357474955|ref|XP_003607763.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355508818|gb|AES89960.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 871
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 96/297 (32%), Positives = 142/297 (47%), Gaps = 14/297 (4%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
L L+ + CG+L AR++FDE+P R SW MIV YV +E + LF M +
Sbjct: 172 LTSLVDAYSKCGKLRDARKVFDEIPDRSVVSWTSMIVAYVQNECAEEGLMLFNRMREGFL 231
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+ + + C C + GK VHG + K G N L SL+N Y K +
Sbjct: 232 DGNVFTVGSLVTACTKLGC-----LHQGKWVHGYVIKNGIEINSYLATSLLNMYVKCGDI 286
Query: 169 EDADFVFSQLK------RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFS 222
DA VF + + V WTA IV + G+ F + RI NS T +
Sbjct: 287 GDARSVFDEFSVSTCGGGDDLVFWTAMIVGYTQRGYPQAALELFTDKKWYRILPNSVTLA 346
Query: 223 SVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282
S+L AC +++ G+ +H +VK GL+ D ++ LVDMY KC L+ DA VF VD
Sbjct: 347 SLLSACAQLENI-VMGKLLHVLVVKYGLD-DTSLRNSLVDMYAKCGLIPDAHYVFATTVD 404
Query: 283 KKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKI 339
K++ SWN+++ GY ++G EA M+ + + AC+S+ A +I
Sbjct: 405 -KDVVSWNSVISGYAQSGSAYEALDLFNRMRMESFLPDAVTVVGVLSACASVGAHQI 460
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 87/289 (30%), Positives = 128/289 (44%), Gaps = 17/289 (5%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLR------DFNSWAVMIVGYVDVADYQECITLFAEMMK 105
LL M+V CG + AR +FDE + D W MIVGY Q + LF +
Sbjct: 276 LLNMYVKCGDIGDARSVFDEFSVSTCGGGDDLVFWTAMIVGYTQRGYPQAALELFTD--- 332
Query: 106 RKKGHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
KK + +L P + + +L AC N+ +GK +H L+ K G + SL SL++ Y K
Sbjct: 333 -KKWYRIL--PNSVTLASLLSACAQLENIVMGKLLHVLVVKYGLD-DTSLRNSLVDMYAK 388
Query: 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
+ DA +VF+ + V W + I + G ++ + F M E ++ T V
Sbjct: 389 CGLIPDAHYVFATTVDKDVVSWNSVISGYAQSGSAYEALDLFNRMRMESFLPDAVTVVGV 448
Query: 225 LKACGGVDDDGNCGRQMHANIVKIGLESDE-YVQCGLVDMYGKCRLLRDAERVFELIVDK 283
L AC V G +H +K GL S YV L++ Y KC A VF+ + +
Sbjct: 449 LSACASVGAH-QIGLSLHGFALKYGLVSSSIYVGTALLNFYAKCGDATSARMVFDGM-GE 506
Query: 284 KNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
KN +W AM+ G G V + M + E + L ACS
Sbjct: 507 KNAVTWAAMIGGCGMQGDGVGSLALFRDMLKEELVPNEVVFTTLLAACS 555
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 77/180 (42%), Gaps = 6/180 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ CG + A +F +D SW +I GY E + LF M
Sbjct: 380 NSLVDMYAKCGLIPDAHYVFATTVDKDVVSWNSVISGYAQSGSAYEALDLFNRMRMES-- 437
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLG-SSRNISLTGSLINFYGKFRCL 168
+ A +V VL AC ++G +HG K G S +I + +L+NFY K
Sbjct: 438 ---FLPDAVTVVGVLSACASVGAHQIGLSLHGFALKYGLVSSSIYVGTALLNFYAKCGDA 494
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
A VF + N V W A I +G F++M +E + N F+++L AC
Sbjct: 495 TSARMVFDGMGEKNAVTWAAMIGGCGMQGDGVGSLALFRDMLKEELVPNEVVFTTLLAAC 554
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 82/183 (44%), Gaps = 12/183 (6%)
Query: 157 SLINFYGKFRCLEDADFVFSQLKR--HNT--VVWTAKIVNNCREGHFHQVFNDFKEMGRE 212
+LI+ Y F L A +F +L H++ ++ +N+ H H V F + R
Sbjct: 73 TLISLYASFGFLRHARTLFHRLPSPTHHSFKLIIRWHFLNDV---HSHVV--SFYNLART 127
Query: 213 RIKK-NSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLR 271
+ N S+L D ++H NI+K +D +V LVD Y KC LR
Sbjct: 128 TLGSFNDLVVFSILLKTASQLRDIVLTTKLHCNILKSN-AADSFVLTSLVDAYSKCGKLR 186
Query: 272 DAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
DA +VF+ I D +++ SW +M+V Y++N E M+ + + L AC
Sbjct: 187 DARKVFDEIPD-RSVVSWTSMIVAYVQNECAEEGLMLFNRMREGFLDGNVFTVGSLVTAC 245
Query: 332 SSI 334
+ +
Sbjct: 246 TKL 248
>gi|413916018|gb|AFW55950.1| hypothetical protein ZEAMMB73_919937 [Zea mays]
Length = 864
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 93/329 (28%), Positives = 152/329 (46%), Gaps = 18/329 (5%)
Query: 9 TTDMYTCLIK---ECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTA 65
TT + CL++ C + G F+ + H R V+ N +L +V G DTA
Sbjct: 53 TTFVSNCLLQMYARCGGTAHAHGVFDTMPH-RDTVS-------WNTMLTAYVHAGDTDTA 104
Query: 66 RQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLK 125
LF MP D SW +I GY ++ + L EM +R + + +LK
Sbjct: 105 ASLFGTMPDPDVVSWNTLISGYCQHGMFRNSVGLSMEMSRRG-----VALDRTTLAVLLK 159
Query: 126 ACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVV 185
+C ++ LG Q+H L K G ++ +L++ YGK R L+DA F + N+V
Sbjct: 160 SCGGLDDLALGVQIHALAVKTGLETDVRAGSALVDMYGKCRSLDDALRFFHGMGERNSVS 219
Query: 186 WTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANI 245
W A I + + + F +M R + + ++S ++C + + RQ+HA+
Sbjct: 220 WGAAIAGCVQNEQYTRGMELFVQMQRLGLGVSQPAYASAFRSCAAMPCL-STARQLHAHA 278
Query: 246 VKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEA 305
+K SD V +VD+Y K L DA R F + + N+ + NAM+VG +R GL EA
Sbjct: 279 IKNVFSSDRVVGTAIVDVYAKAGNLVDARRAF-IGLPHHNVETCNAMMVGLVRTGLGAEA 337
Query: 306 TKFLYLMKASGIQIQESLINDLRIACSSI 334
+ M SG+ ++ + AC+ +
Sbjct: 338 MQLFQFMTRSGVGFDVISLSGVFSACAEV 366
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/318 (25%), Positives = 142/318 (44%), Gaps = 8/318 (2%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCG 60
M L L ++ Y + C + A +L H K V + ++ ++ G
Sbjct: 243 MQRLGLGVSQPAYASAFRSCAAMPCLSTARQLHAHAIKNV-FSSDRVVGTAIVDVYAKAG 301
Query: 61 QLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWII 120
L AR+ F +P + + M+VG V E + LF M + G F +
Sbjct: 302 NLVDARRAFIGLPHHNVETCNAMMVGLVRTGLGAEAMQLFQFMTRSGVG-----FDVISL 356
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
V AC G QVH L K G ++ + ++++ YGK + L +A VF ++++
Sbjct: 357 SGVFSACAEVKGYFQGLQVHCLAVKSGFDVDVCVRNAILDLYGKCKALVEAYLVFQEMEQ 416
Query: 181 HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQ 240
++V W A I + + EM R ++ + +T+ SVLKAC G+ G
Sbjct: 417 RDSVSWNAIIAALEQNECYEDTIAHLNEMLRSGMEPDDFTYGSVLKACAGLQSL-EYGLV 475
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
+H +K GL D +V +VDMY KC + +A+++ + I + + SWN+++ G+
Sbjct: 476 VHGKAIKSGLGLDAFVSSTVVDMYCKCGAITEAQKLHDRI-GGQELVSWNSIISGFSLTK 534
Query: 301 LYVEATKFLYLMKASGIQ 318
EA +F M G++
Sbjct: 535 QSEEAQRFFSEMLDMGVK 552
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 79/286 (27%), Positives = 133/286 (46%), Gaps = 9/286 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N +L ++ C L A +F EM RD SW +I Y++ I EM++
Sbjct: 392 NAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQNECYEDTIAHLNEMLRSGME 451
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ + VLKAC ++E G VHG K G + ++ ++++ Y K +
Sbjct: 452 PDDFTYGS-----VLKACAGLQSLEYGLVVHGKAIKSGLGLDAFVSSTVVDMYCKCGAIT 506
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
+A + ++ V W + I + F EM +K + +T+++VL C
Sbjct: 507 EAQKLHDRIGGQELVSWNSIISGFSLTKQSEEAQRFFSEMLDMGVKPDHFTYATVLDTCA 566
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ G+Q+H I+K + DEY+ LVDMY KC + D+ +FE K + SW
Sbjct: 567 NLATI-ELGKQIHGQIIKQEMLGDEYISSTLVDMYAKCGNMPDSLLMFEK-ARKLDFVSW 624
Query: 290 NAMLVGYIRNGLYVEATK-FLYLMKASGIQIQESLINDLRIACSSI 334
NAM+ GY +G +EA + F + +A+ + + + LR ACS +
Sbjct: 625 NAMICGYALHGQGLEALEMFERMQRANVVPNHATFVAVLR-ACSHV 669
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 61/243 (25%), Positives = 110/243 (45%), Gaps = 13/243 (5%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEM--MKRKKGHML 112
M+ CG + A++L D + ++ SW +I G+ +E F+EM M K H
Sbjct: 498 MYCKCGAITEAQKLHDRIGGQELVSWNSIISGFSLTKQSEEAQRFFSEMLDMGVKPDH-- 555
Query: 113 LVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDAD 172
+ VL C +ELGKQ+HG + K + ++ +L++ Y K + D+
Sbjct: 556 -----FTYATVLDTCANLATIELGKQIHGQIIKQEMLGDEYISSTLVDMYAKCGNMPDSL 610
Query: 173 FVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG--G 230
+F + ++ + V W A I G + F+ M R + N TF +VL+AC G
Sbjct: 611 LMFEKARKLDFVSWNAMICGYALHGQGLEALEMFERMQRANVVPNHATFVAVLRACSHVG 670
Query: 231 VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWN 290
+ DDG + + K+ + E+ C +VD+ G+ + ++A + + + W
Sbjct: 671 LLDDGCQYFHLMTSRYKL-VPQLEHFAC-MVDILGRSKGPQEALEFIRSMPIEADAVVWK 728
Query: 291 AML 293
+L
Sbjct: 729 TLL 731
Score = 40.8 bits (94), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 43/107 (40%), Gaps = 2/107 (1%)
Query: 220 TFSSVLKACGGVDDDG-NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE 278
TFS + + C G+ HA ++ G +V L+ MY +C A VF+
Sbjct: 19 TFSHLYQLCASAGRSALTTGQAAHARMLVSGFMPTTFVSNCLLQMYARCGGTAHAHGVFD 78
Query: 279 LIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLIN 325
+ + + SWN ML Y+ G A M + +LI+
Sbjct: 79 TMPHRDTV-SWNTMLTAYVHAGDTDTAASLFGTMPDPDVVSWNTLIS 124
>gi|297847366|ref|XP_002891564.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297337406|gb|EFH67823.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 596
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 94/315 (29%), Positives = 150/315 (47%), Gaps = 9/315 (2%)
Query: 19 ECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFN 78
+ F+ A F+ HI K L N L+ + +CG + ++FD +D
Sbjct: 112 KAVFKLRDANPFQFHAHILK-FGFDSDLFVRNSLISGYSNCGLFEFGSRVFDGTEDKDVV 170
Query: 79 SWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQ 138
SW MI G+V E +T F EM ++ G + +V VLKA ++ G+
Sbjct: 171 SWTAMIDGFVRNDSSLEAMTYFVEM--KRSG---VAANEMTVVSVLKATRKAEDVRFGRS 225
Query: 139 VHGLLFKLGSSR-NISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREG 197
+HG + G R ++ + SL++ YGK C +DA VF ++ N V WTA I +
Sbjct: 226 IHGFYLEAGRVRCDVFIGSSLVDMYGKCGCYDDAQKVFDEMPSRNVVTWTALIAGYVQGR 285
Query: 198 HFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQ 257
F + F+EM + + N T SSVL AC V + GR++H ++K +E + V
Sbjct: 286 CFEKGMFVFEEMLKSDVAPNEKTLSSVLSACAHV-GALHRGRRVHCYVIKNSIEINTTVG 344
Query: 258 CGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGI 317
L+D Y KC L +A VFE + +KN+ +W AM+ G+ +G + A + M +S +
Sbjct: 345 TTLIDFYAKCGCLEEAILVFERL-REKNVYTWTAMINGFAAHGYAIGAVDLFHTMLSSHV 403
Query: 318 QIQESLINDLRIACS 332
E + AC+
Sbjct: 404 SPNEVTFIVVLSACA 418
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 119/245 (48%), Gaps = 11/245 (4%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ CG D A+++FDEMP R+ +W +I GYV +++ + +F EM+K
Sbjct: 246 LVDMYGKCGCYDDAQKVFDEMPSRNVVTWTALIAGYVQGRCFEKGMFVFEEMLKSD---- 301
Query: 112 LLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
V P + VL AC + G++VH + K N ++ +LI+FY K CLE+
Sbjct: 302 --VAPNEKTLSSVLSACAHVGALHRGRRVHCYVIKNSIEINTTVGTTLIDFYAKCGCLEE 359
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC-- 228
A VF +L+ N WTA I G+ + F M + N TF VL AC
Sbjct: 360 AILVFERLREKNVYTWTAMINGFAAHGYAIGAVDLFHTMLSSHVSPNEVTFIVVLSACAH 419
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
GG+ ++G R + + LE +VD++G+ LL +A+ + E + + A
Sbjct: 420 GGLVEEGR--RLFLSMKERFNLEPKADHYACMVDLFGRKGLLEEAKALIERMPMEPTNAV 477
Query: 289 WNAML 293
W A+
Sbjct: 478 WGALF 482
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 74/291 (25%), Positives = 123/291 (42%), Gaps = 7/291 (2%)
Query: 47 LFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR 106
LFL+RLL + Q AR+L ++ W ++ + ++ + R
Sbjct: 37 LFLSRLLRRCTAATQFRYARRLLCQIQTPSIQLWDSLVGHFSGRVTLNRRLSFLSYRQMR 96
Query: 107 KKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166
+ G V P+ L V + Q H + K G ++ + SLI+ Y
Sbjct: 97 RNG----VVPSRHTFPPLLKAVFKLRDANPFQFHAHILKFGFDSDLFVRNSLISGYSNCG 152
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
E VF + + V WTA I R + F EM R + N T SVLK
Sbjct: 153 LFEFGSRVFDGTEDKDVVSWTAMIDGFVRNDSSLEAMTYFVEMKRSGVAANEMTVVSVLK 212
Query: 227 ACGGVDDDGNCGRQMHANIVKIG-LESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
A +D GR +H ++ G + D ++ LVDMYGKC DA++VF+ + +N
Sbjct: 213 ATRKAED-VRFGRSIHGFYLEAGRVRCDVFIGSSLVDMYGKCGCYDDAQKVFDEM-PSRN 270
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+ +W A++ GY++ + + M S + E ++ + AC+ + A
Sbjct: 271 VVTWTALIAGYVQGRCFEKGMFVFEEMLKSDVAPNEKTLSSVLSACAHVGA 321
>gi|347954532|gb|AEP33766.1| organelle transcript processing 82, partial [Lepidium virginicum]
Length = 464
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 92/287 (32%), Positives = 146/287 (50%), Gaps = 17/287 (5%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ + S G +AR+LFDE+ ++D SW MI GYV+ +Y+E + L+ EM+K
Sbjct: 145 LITGYASRGYTKSARKLFDEILVKDIVSWNAMISGYVETFNYKEALELYKEMVKTN---- 200
Query: 112 LLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
V P +V V+ AC + N+ELG+QVH L+ G N+ + +L++ Y K +E
Sbjct: 201 --VKPDESTMVTVVSACAQSSNIELGRQVHSLIEDHGFGSNLKVVNALMDMYSKCGEMET 258
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC-- 228
A +F L + + W I + + + F+EM R N T SVL AC
Sbjct: 259 ACRLFQGLVNKDAISWNTLIGGHTHMNLYKEALFLFQEMLRSGESPNDVTMLSVLSACAH 318
Query: 229 -GGVDDDGNCGRQMHANIVK--IGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
G +D GR +H I K G+ + ++ L+DMY KC + A +VF+ ++ ++
Sbjct: 319 LGAID----IGRWIHVYIDKRLKGVTNSSSLRTSLIDMYAKCGDIEAASQVFDSML-ARS 373
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
++SWNAM+ G+ +G A M+ SGI+ + L ACS
Sbjct: 374 LSSWNAMIFGFAMHGKANAAFDLFSKMRKSGIEPDDITFVGLLSACS 420
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 78/309 (25%), Positives = 132/309 (42%), Gaps = 38/309 (12%)
Query: 62 LDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIV 121
L A +F+ + + W M G+ +D + L+ M+ + L+ ++
Sbjct: 23 LPYAISVFETIEEPNLLIWNTMFRGHALNSDSVSALKLYVCMIS-----LGLLPNSYSFP 77
Query: 122 CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH 181
+LK+C + G+Q+HG + KLG ++ + SLI+ Y + LEDA VF +
Sbjct: 78 FLLKSCAKSKAFREGQQIHGHVVKLGYDLDMYVHTSLISMYAQNGRLEDAHKVFDRSSHR 137
Query: 182 NTVVWTAKIVNNCREGH-------------------------------FHQVFNDFKEMG 210
+ V +TA I G+ + + +KEM
Sbjct: 138 HVVSYTALITGYASRGYTKSARKLFDEILVKDIVSWNAMISGYVETFNYKEALELYKEMV 197
Query: 211 RERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLL 270
+ +K + T +V+ AC + GRQ+H+ I G S+ V L+DMY KC +
Sbjct: 198 KTNVKPDESTMVTVVSACAQ-SSNIELGRQVHSLIEDHGFGSNLKVVNALMDMYSKCGEM 256
Query: 271 RDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIA 330
A R+F+ +V+K I SWN ++ G+ LY EA M SG + + + A
Sbjct: 257 ETACRLFQGLVNKDAI-SWNTLIGGHTHMNLYKEALFLFQEMLRSGESPNDVTMLSVLSA 315
Query: 331 CSSISASKI 339
C+ + A I
Sbjct: 316 CAHLGAIDI 324
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 119/236 (50%), Gaps = 19/236 (8%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L +N L+ M+ CG+++TA +LF + +D SW +I G+ + Y+E + LF EM++
Sbjct: 240 LKVVNALMDMYSKCGEMETACRLFQGLVNKDAISWNTLIGGHTHMNLYKEALFLFQEMLR 299
Query: 106 RKKGHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKL--GSSRNISLTGSLINFY 162
+ P + ++ VL AC +++G+ +H + K G + + SL SLI+ Y
Sbjct: 300 SGES------PNDVTMLSVLSACAHLGAIDIGRWIHVYIDKRLKGVTNSSSLRTSLIDMY 353
Query: 163 GKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFS 222
K +E A VF + + W A I G + F+ F +M + I+ + TF
Sbjct: 354 AKCGDIEAASQVFDSMLARSLSSWNAMIFGFAMHGKANAAFDLFSKMRKSGIEPDDITFV 413
Query: 223 SVLKAC--GGVDDDGNCGRQMHANIV---KIGLESDEYVQCGLVDMYGKCRLLRDA 273
+L AC G+ D GR + +++ KI + + Y C ++D+ G+C L ++A
Sbjct: 414 GLLSACSHSGMLD---LGRHIFSSMTQDYKITPKLEHY-GC-MIDLLGQCALFKEA 464
>gi|242082744|ref|XP_002441797.1| hypothetical protein SORBIDRAFT_08g002505 [Sorghum bicolor]
gi|241942490|gb|EES15635.1| hypothetical protein SORBIDRAFT_08g002505 [Sorghum bicolor]
Length = 839
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 102/361 (28%), Positives = 151/361 (41%), Gaps = 45/361 (12%)
Query: 9 TTDMYTCLIKECTFQKDSAGAFELLNHIRKRVN-IKPTLLFLNRLLLMHVSCGQLDTARQ 67
T ++ L + C SA A H R V+ PT N LL M+ CG AR
Sbjct: 1 ATATFSHLYQLCAGAGRSALATGQAAHARMLVSGFMPTTFVSNCLLQMYARCGGAAHARG 60
Query: 68 LFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEM------------------------ 103
+FD MP RD SW M+ Y D +LF M
Sbjct: 61 VFDVMPHRDTVSWNTMLTAYAHAGDTGAAASLFGAMPDPDVVSWNALLSGYCQRGMFRDS 120
Query: 104 ------MKRKKGHMLLVFPAWIIVCVL-KACVCTMNMELGKQVHGLLFKLGSSRNISLTG 156
M R+ V P + VL KAC ++ LG Q+H + K G ++
Sbjct: 121 VGLSVEMARRG-----VAPDRTTLAVLLKACGGLEDLALGVQIHAVAVKTGLEMDVRAGS 175
Query: 157 SLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKK 216
+L++ YGK R LEDA F + N+V W A I + + + F +M R +
Sbjct: 176 ALVDMYGKCRSLEDALRFFHGMGERNSVSWGAAIAGCVQNEQYTRGLELFVQMQRLGLGV 235
Query: 217 NSYTFSSVLKACGGVDDDGNC---GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDA 273
+ ++SV ++C + C RQ+HA+ +K +D V +VD+Y K L DA
Sbjct: 236 SQPAYASVFRSCAAI----TCLSTARQLHAHAIKNKFSADRVVGTAIVDVYAKADSLVDA 291
Query: 274 ERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSS 333
R F + + + NAM+VG +R GL EA + M SGI ++ + AC+
Sbjct: 292 RRAF-FSLPNHTVQACNAMMVGLVRTGLGAEALQLFQFMTRSGIGFDVVSLSGVFSACAE 350
Query: 334 I 334
+
Sbjct: 351 V 351
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 82/318 (25%), Positives = 142/318 (44%), Gaps = 8/318 (2%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCG 60
M L L ++ Y + + C + A +L H K + ++ ++
Sbjct: 228 MQRLGLGVSQPAYASVFRSCAAITCLSTARQLHAHAIKN-KFSADRVVGTAIVDVYAKAD 286
Query: 61 QLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWII 120
L AR+ F +P + M+VG V E + LF M + G F +
Sbjct: 287 SLVDARRAFFSLPNHTVQACNAMMVGLVRTGLGAEALQLFQFMTRSGIG-----FDVVSL 341
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
V AC G QVH L K G ++ + ++++ YGK + L +A VF ++++
Sbjct: 342 SGVFSACAEVKGYLQGLQVHCLAIKSGFDVDVCVRNAILDLYGKCKALVEAYLVFQEMEQ 401
Query: 181 HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQ 240
++V W A I + + EM R ++ + +T+ SVLKAC G+ G
Sbjct: 402 RDSVSWNAIIAALEQNECYEDTIAYLNEMLRYGMEPDDFTYGSVLKACAGLQSL-EYGSV 460
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
+H +K GL D +V +VDMY KC ++ +A+++ + I + + SWN+++ G+ N
Sbjct: 461 VHGKAIKSGLGLDAFVSSTVVDMYCKCGMITEAQKLHDRI-GGQELVSWNSIISGFSLNK 519
Query: 301 LYVEATKFLYLMKASGIQ 318
EA KF M G++
Sbjct: 520 QSEEAQKFFSEMLDIGVK 537
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 128/285 (44%), Gaps = 7/285 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N +L ++ C L A +F EM RD SW +I Y++ I EM++
Sbjct: 377 NAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQNECYEDTIAYLNEMLRYGME 436
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ + VLKAC ++E G VHG K G + ++ ++++ Y K +
Sbjct: 437 PDDFTYGS-----VLKACAGLQSLEYGSVVHGKAIKSGLGLDAFVSSTVVDMYCKCGMIT 491
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
+A + ++ V W + I + F EM +K + +T+++VL C
Sbjct: 492 EAQKLHDRIGGQELVSWNSIISGFSLNKQSEEAQKFFSEMLDIGVKPDHFTYATVLDTCA 551
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ G+Q+H I+K + DEY+ LVDMY KC + D+ +FE K + SW
Sbjct: 552 NLATI-ELGKQIHGQIIKQEMLGDEYISSTLVDMYAKCGNMPDSLLMFEK-AQKLDFVSW 609
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
NAM+ GY +G EA + M+ + + + + ACS +
Sbjct: 610 NAMICGYALHGQGFEALEMFERMQQANVVPNHATFVAVLRACSHV 654
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 112/244 (45%), Gaps = 15/244 (6%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK--RKKGHML 112
M+ CG + A++L D + ++ SW +I G+ +E F+EM+ K H
Sbjct: 483 MYCKCGMITEAQKLHDRIGGQELVSWNSIISGFSLNKQSEEAQKFFSEMLDIGVKPDH-- 540
Query: 113 LVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDAD 172
+ VL C +ELGKQ+HG + K + ++ +L++ Y K + D+
Sbjct: 541 -----FTYATVLDTCANLATIELGKQIHGQIIKQEMLGDEYISSTLVDMYAKCGNMPDSL 595
Query: 173 FVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG--G 230
+F + ++ + V W A I G + F+ M + + N TF +VL+AC G
Sbjct: 596 LMFEKAQKLDFVSWNAMICGYALHGQGFEALEMFERMQQANVVPNHATFVAVLRACSHVG 655
Query: 231 VDDDGNCGRQMHANIVKIGLESD-EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ DDG C R + + LE E+ C +VD+ G+ + ++A + + + + W
Sbjct: 656 LLDDG-C-RYFYLMTSRYKLEPQLEHFAC-MVDILGRSKGPQEALKFIRSMPLEADAVIW 712
Query: 290 NAML 293
+L
Sbjct: 713 KTLL 716
>gi|357127622|ref|XP_003565478.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Brachypodium distachyon]
Length = 870
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 90/271 (33%), Positives = 132/271 (48%), Gaps = 10/271 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMP-LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
+L+LM++ CG L+ AR++FDEMP + D W ++ GY D +E + LF +M
Sbjct: 133 QKLVLMYLKCGDLENARRVFDEMPQVSDVRVWTALMSGYAKAGDLREGVLLFRKM----- 187
Query: 109 GHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
H V P A+ I CVLK ++E G+ VHGLL KLG ++ +L+ FY K
Sbjct: 188 -HCCGVRPDAYTISCVLKCIAGLGSIEDGEVVHGLLEKLGFGSQCAVGNALMAFYAKSNR 246
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
+DA VF + + + W + I G + + F M E + +S T SVL A
Sbjct: 247 TKDAILVFDGMPHRDVISWNSMISGCTSNGLYDKAIELFVRMWLEGEELDSATLLSVLPA 306
Query: 228 CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
C + GR +H VK G S + L+DMY C R ++F +V +KN+
Sbjct: 307 CAELHLL-FLGRVVHGYSVKTGFISQTSLANVLLDMYSNCSDWRSTNKIFRNMV-QKNVV 364
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
SW AM+ Y R GLY + M G +
Sbjct: 365 SWTAMITSYTRAGLYDKVAGLFQEMGLEGTR 395
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 87/303 (28%), Positives = 139/303 (45%), Gaps = 10/303 (3%)
Query: 5 CLPITTDMYT--CLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQL 62
C + D YT C++K C S E+++ + +++ N L+ + +
Sbjct: 189 CCGVRPDAYTISCVLK-CIAGLGSIEDGEVVHGLLEKLGFGSQCAVGNALMAFYAKSNRT 247
Query: 63 DTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVC 122
A +FD MP RD SW MI G Y + I LF M + + ++
Sbjct: 248 KDAILVFDGMPHRDVISWNSMISGCTSNGLYDKAIELFVRMWLEGE-----ELDSATLLS 302
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
VL AC + LG+ VHG K G SL L++ Y + +F + + N
Sbjct: 303 VLPACAELHLLFLGRVVHGYSVKTGFISQTSLANVLLDMYSNCSDWRSTNKIFRNMVQKN 362
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
V WTA I + R G + +V F+EMG E + + + +S L A G ++ G+ +H
Sbjct: 363 VVSWTAMITSYTRAGLYDKVAGLFQEMGLEGTRPDIFAITSALHAFAG-NELLKHGKSVH 421
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
++ G+E V L++MY KC + +A+ +F+ +V K I SWN ++ GY RN L
Sbjct: 422 GYAIRNGMEKVLAVTNALMEMYVKCGNMEEAKLIFDGVVSKDMI-SWNTLIGGYSRNNLA 480
Query: 303 VEA 305
EA
Sbjct: 481 NEA 483
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 80/283 (28%), Positives = 133/283 (46%), Gaps = 8/283 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N LL M+ +C + ++F M ++ SW MI Y Y + LF EM +G
Sbjct: 336 NVLLDMYSNCSDWRSTNKIFRNMVQKNVVSWTAMITSYTRAGLYDKVAGLFQEM--GLEG 393
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+F I L A ++ GK VHG + G + +++T +L+ Y K +E
Sbjct: 394 TRPDIFA---ITSALHAFAGNELLKHGKSVHGYAIRNGMEKVLAVTNALMEMYVKCGNME 450
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
+A +F + + + W I R ++ F+ F EM + ++ N+ T + +L A
Sbjct: 451 EAKLIFDGVVSKDMISWNTLIGGYSRNNLANEAFSLFTEMLLQ-LRPNAVTMTCILPAAA 509
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ GR+MHA ++ G D++V L+DMY KC L A R+F+ + + KN+ SW
Sbjct: 510 SLSSLER-GREMHAYALRRGYLEDDFVANALIDMYVKCGALLLARRLFDRLSN-KNLISW 567
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
M+ GY +G +A M+ SGI + + + ACS
Sbjct: 568 TIMVAGYGMHGRGRDAIALFEQMRVSGIAPDAASFSAILYACS 610
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 98/213 (46%), Gaps = 14/213 (6%)
Query: 31 ELLNHIRK------RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMI 84
ELL H + R ++ L N L+ M+V CG ++ A+ +FD + +D SW +I
Sbjct: 412 ELLKHGKSVHGYAIRNGMEKVLAVTNALMEMYVKCGNMEEAKLIFDGVVSKDMISWNTLI 471
Query: 85 VGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLF 144
GY E +LF EM+ + L A + C+L A ++E G+++H
Sbjct: 472 GGYSRNNLANEAFSLFTEML------LQLRPNAVTMTCILPAAASLSSLERGREMHAYAL 525
Query: 145 KLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFN 204
+ G + + +LI+ Y K L A +F +L N + WT + G
Sbjct: 526 RRGYLEDDFVANALIDMYVKCGALLLARRLFDRLSNKNLISWTIMVAGYGMHGRGRDAIA 585
Query: 205 DFKEMGRERIKKNSYTFSSVLKAC--GGVDDDG 235
F++M I ++ +FS++L AC G+ D+G
Sbjct: 586 LFEQMRVSGIAPDAASFSAILYACSHSGLRDEG 618
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 106/217 (48%), Gaps = 6/217 (2%)
Query: 122 CVLKACVCTMNMELGKQVHGLL--FKLGSSRNISLTGS-LINFYGKFRCLEDADFVFSQL 178
VL+ C ++E GK+ H L+ LG ++ G L+ Y K LE+A VF ++
Sbjct: 96 AVLQLCSEVRSLEGGKRAHFLVRASSLGRDGMDNVLGQKLVLMYLKCGDLENARRVFDEM 155
Query: 179 KRHNTV-VWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC 237
+ + V VWTA + + G + F++M ++ ++YT S VLK G+ +
Sbjct: 156 PQVSDVRVWTALMSGYAKAGDLREGVLLFRKMHCCGVRPDAYTISCVLKCIAGLGSIED- 214
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYI 297
G +H + K+G S V L+ Y K +DA VF+ + +++ SWN+M+ G
Sbjct: 215 GEVVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKDAILVFDGM-PHRDVISWNSMISGCT 273
Query: 298 RNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
NGLY +A + M G ++ + + + AC+ +
Sbjct: 274 SNGLYDKAIELFVRMWLEGEELDSATLLSVLPACAEL 310
>gi|255546694|ref|XP_002514406.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223546503|gb|EEF48002.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 436
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 94/320 (29%), Positives = 155/320 (48%), Gaps = 13/320 (4%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
Y+ LIK C + ++ H+ +P + +N LL M+V LD A LFD+M
Sbjct: 60 YSELIKCCLARNAIEQGKQVYKHLSSN-GYQPNIFLINMLLNMYVKFNLLDEALTLFDQM 118
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN 132
P R+ SW MI + + + + M++ + + + +L+AC N
Sbjct: 119 PERNVVSWTTMISAFSNAKLNDKALEFLICMLREGVKPNVYTYSS-----ILRACDGVYN 173
Query: 133 MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192
+ +Q+HG + K G ++ + +LI+ Y K+ E+A +VF+++ + +VW + I
Sbjct: 174 L---RQLHGNIIKSGLDSDVYVRSALIDIYSKWGESENALYVFNEMVTGDLIVWNSIIAG 230
Query: 193 NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLES 252
+ + N FK M R N +SVL+AC G+ GRQ+H ++ K +
Sbjct: 231 FAQNNDGDEALNLFKSMKRNGFPANQSALTSVLRACTGL-ALLELGRQVHVHVFK--HDQ 287
Query: 253 DEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLM 312
D + L+DMY KC L DA VF +V+ K++ SW+ M+ G+ +NG EA K M
Sbjct: 288 DLVLNNALLDMYCKCGSLEDANYVFTRMVE-KDVISWSTMIAGFAQNGYSREALKLFESM 346
Query: 313 KASGIQIQESLINDLRIACS 332
K SG + I + ACS
Sbjct: 347 KVSGTKPNYITILGVLFACS 366
Score = 44.7 bits (104), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 35/167 (20%), Positives = 76/167 (45%), Gaps = 7/167 (4%)
Query: 173 FVFSQLKRHNTVVWTA-----KIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
F F +R++T + + C + + M + I +S+T+S ++K
Sbjct: 7 FAFKVWRRYHTATSNSSSLLREFTEFCYQRDLPRAMKAMDAMHKHGIWADSFTYSELIKC 66
Query: 228 CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
C + G+Q++ ++ G + + ++ L++MY K LL +A +F+ + ++ N+
Sbjct: 67 CLARNAIEQ-GKQVYKHLSSNGYQPNIFLINMLLNMYVKFNLLDEALTLFDQMPER-NVV 124
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
SW M+ + L +A +FL M G++ + + AC +
Sbjct: 125 SWTTMISAFSNAKLNDKALEFLICMLREGVKPNVYTYSSILRACDGV 171
>gi|110738388|dbj|BAF01120.1| hypothetical protein [Arabidopsis thaliana]
Length = 596
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 95/315 (30%), Positives = 150/315 (47%), Gaps = 9/315 (2%)
Query: 19 ECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFN 78
+ F+ + F+ HI K + N L+ + S G D A +LFD +D
Sbjct: 112 KAVFKLRDSNPFQFHAHIVK-FGLDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVV 170
Query: 79 SWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQ 138
+W MI G+V E + F EM +K G + +V VLKA ++ G+
Sbjct: 171 TWTAMIDGFVRNGSASEAMVYFVEM--KKTG---VAANEMTVVSVLKAAGKVEDVRFGRS 225
Query: 139 VHGLLFKLGSSR-NISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREG 197
VHGL + G + ++ + SL++ YGK C +DA VF ++ N V WTA I +
Sbjct: 226 VHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSR 285
Query: 198 HFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQ 257
F + F+EM + + N T SSVL AC V + GR++H ++K +E +
Sbjct: 286 CFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGA-LHRGRRVHCYMIKNSIEINTTAG 344
Query: 258 CGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGI 317
L+D+Y KC L +A VFE + +KN+ +W AM+ G+ +G +A Y M +S +
Sbjct: 345 TTLIDLYVKCGCLEEAILVFERL-HEKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHV 403
Query: 318 QIQESLINDLRIACS 332
E + AC+
Sbjct: 404 SPNEVTFMAVLSACA 418
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/247 (29%), Positives = 118/247 (47%), Gaps = 11/247 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+ L+ M+ C D A+++FDEMP R+ +W +I GYV + + + +F EM+K
Sbjct: 244 SSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSD-- 301
Query: 110 HMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
V P + VL AC + G++VH + K N + +LI+ Y K CL
Sbjct: 302 ----VAPNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCL 357
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
E+A VF +L N WTA I G+ F+ F M + N TF +VL AC
Sbjct: 358 EEAILVFERLHEKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSAC 417
Query: 229 --GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
GG+ ++G + L++D Y C +VD++G+ LL +A+ + E + +
Sbjct: 418 AHGGLVEEGRRLFLSMKGRFNMELKADHYA-C-MVDLFGRKGLLEEAKALIERMPMEPTN 475
Query: 287 ASWNAML 293
W A+
Sbjct: 476 VVWGALF 482
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 77/292 (26%), Positives = 128/292 (43%), Gaps = 8/292 (2%)
Query: 47 LFLNRLLLMHVSCG-QLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
LFL+RLL + Q AR+L ++ W +I + ++ A
Sbjct: 36 LFLSRLLRRCCTAATQFRYARRLLCQLQTLSIQLWDSLIGHFSGGITLNRRLSFLAYRHM 95
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
R+ G V P+ L V + Q H + K G + + SLI+ Y
Sbjct: 96 RRNG----VIPSRHTFPPLLKAVFKLRDSNPFQFHAHIVKFGLDSDPFVRNSLISGYSSS 151
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
+ A +F + + V WTA I R G + F EM + + N T SVL
Sbjct: 152 GLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEAMVYFVEMKKTGVAANEMTVVSVL 211
Query: 226 KACGGVDDDGNCGRQMHANIVKIG-LESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
KA G V +D GR +H ++ G ++ D ++ LVDMYGKC DA++VF+ + +
Sbjct: 212 KAAGKV-EDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEM-PSR 269
Query: 285 NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
N+ +W A++ GY+++ + + M S + E ++ + AC+ + A
Sbjct: 270 NVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGA 321
>gi|297745796|emb|CBI15852.3| unnamed protein product [Vitis vinifera]
Length = 595
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 98/325 (30%), Positives = 159/325 (48%), Gaps = 21/325 (6%)
Query: 9 TTDMYT--CLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTAR 66
T +MYT ++K +D+ E+ +H ++ ++ L+ M+ CG L AR
Sbjct: 276 TPNMYTFSSVLKAVGKIRDATKGREV-HHCVMEYGMESNVVVGTSLIDMYSKCGHLSDAR 334
Query: 67 QLFDEMPLRDF------NSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWII 120
+FD R+F N W MI Y +QE + LF EM L +
Sbjct: 335 SVFD----RNFYKSKVNNPWNAMISSYTQCGYWQEALDLFIEMSLNDVKPDLYTYGG--- 387
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLGS-SRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
V A + G+QVHG++ K G+ SR +SL ++++ Y K + LEDA VF +++
Sbjct: 388 --VFSAIAALKWLYFGRQVHGMVVKSGNGSRVLSLNNAIVDAYFKCQSLEDARKVFDRMQ 445
Query: 180 RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGR 239
+ V WT + + + + F +M + N +TFSSVL AC + GR
Sbjct: 446 ERDMVSWTTLVSAYVQCYQPSEALSIFSQMREQGFMPNQFTFSSVLVACASLSLL-EYGR 504
Query: 240 QMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRN 299
Q+H I K GL+ D ++ L +MY K + DA VFE IV ++ SW+A++ GY ++
Sbjct: 505 QVHGLICKAGLDDDNCIESSLTNMYAKSGNIIDAVEVFEKIV-CPDVVSWSAIIYGYAQH 563
Query: 300 GLYVEATKFLYLMKASGIQIQESLI 324
G +A + + M+ SGIQ +++
Sbjct: 564 GFLDKAVELVQKMEQSGIQPNSNIL 588
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 86/264 (32%), Positives = 130/264 (49%), Gaps = 7/264 (2%)
Query: 43 KPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAE 102
+ ++ N + M+ C A ++FD MP R+ SW VMI G + + F +
Sbjct: 109 EESIRLFNHVAYMYAECSCFVEAWRVFDGMPHRNSFSWTVMIAGSKKNGLFLDGFRFFYD 168
Query: 103 MMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFY 162
M+ V+ A I C+ C+ ELG+ VHG + K G ++ + SL++ Y
Sbjct: 169 MLVDGILPDEFVYSAVIQSCIGLGCI-----ELGEAVHGQIVKRGFWDDVIVGTSLLSMY 223
Query: 163 GKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFS 222
K E + VF+ + HN V W A I G + + F+ F M + N YTFS
Sbjct: 224 AKLHNSEASVRVFNAIAEHNQVSWGAVISGLSSNGLYLEAFHQFLAMITQGFTPNMYTFS 283
Query: 223 SVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282
SVLKA G + D GR++H +++ G+ES+ V L+DMY KC L DA VF+
Sbjct: 284 SVLKAVGKI-RDATKGREVHHCVMEYGMESNVVVGTSLIDMYSKCGHLSDARSVFDRNFY 342
Query: 283 KKNIAS-WNAMLVGYIRNGLYVEA 305
K + + WNAM+ Y + G + EA
Sbjct: 343 KSKVNNPWNAMISSYTQCGYWQEA 366
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 129/287 (44%), Gaps = 10/287 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL M+ + + ++F+ + + SW +I G Y E F M+ +
Sbjct: 219 LLSMYAKLHNSEASVRVFNAIAEHNQVSWGAVISGLSSNGLYLEAFHQFLAMITQGFTPN 278
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+ F + VLKA + G++VH + + G N+ + SLI+ Y K L DA
Sbjct: 279 MYTFSS-----VLKAVGKIRDATKGREVHHCVMEYGMESNVVVGTSLIDMYSKCGHLSDA 333
Query: 172 DFVFSQ--LKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
VF + K W A I + + G++ + + F EM +K + YT+ V A
Sbjct: 334 RSVFDRNFYKSKVNNPWNAMISSYTQCGYWQEALDLFIEMSLNDVKPDLYTYGGVFSAIA 393
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEY-VQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
+ GRQ+H +VK G S + +VD Y KC+ L DA +VF+ + ++++ S
Sbjct: 394 ALKWL-YFGRQVHGMVVKSGNGSRVLSLNNAIVDAYFKCQSLEDARKVFDRM-QERDMVS 451
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
W ++ Y++ EA M+ G + + + +AC+S+S
Sbjct: 452 WTTLVSAYVQCYQPSEALSIFSQMREQGFMPNQFTFSSVLVACASLS 498
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 90/191 (47%), Gaps = 10/191 (5%)
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFK--LGSSRNISLTGSLINFYGKFRCLEDADFVFSQ 177
+V +L+ ++ GK VHGLL K G +I L + Y + C +A VF
Sbjct: 78 LVDLLRDSAAKGSIREGKSVHGLLLKSSFGDEESIRLFNHVAYMYAECSCFVEAWRVFDG 137
Query: 178 LKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC 237
+ N+ WT I + + G F F F +M + I + + +S+V+++C G+ C
Sbjct: 138 MPHRNSFSWTVMIAGSKKNGLFLDGFRFFYDMLVDGILPDEFVYSAVIQSCIGL----GC 193
Query: 238 ---GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLV 294
G +H IVK G D V L+ MY K + RVF I + N SW A++
Sbjct: 194 IELGEAVHGQIVKRGFWDDVIVGTSLLSMYAKLHNSEASVRVFNAIAE-HNQVSWGAVIS 252
Query: 295 GYIRNGLYVEA 305
G NGLY+EA
Sbjct: 253 GLSSNGLYLEA 263
Score = 44.7 bits (104), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 238 GRQMHANIVKIGLESDEYVQC--GLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
G+ +H ++K +E ++ + MY +C +A RVF+ + +N SW M+ G
Sbjct: 94 GKSVHGLLLKSSFGDEESIRLFNHVAYMYAECSCFVEAWRVFDGM-PHRNSFSWTVMIAG 152
Query: 296 YIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
+NGL+++ +F Y M GI E + + + +C
Sbjct: 153 SKKNGLFLDGFRFFYDMLVDGILPDEFVYSAVIQSC 188
>gi|255552163|ref|XP_002517126.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543761|gb|EEF45289.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 463
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 82/247 (33%), Positives = 127/247 (51%), Gaps = 9/247 (3%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+ G A++LFDE+P R+ +W I V YQ F E+ R+ G
Sbjct: 152 MYSKTGLKQDAQKLFDELPERNVVTWNAYISNAVLYGRYQNAAVAFVEL--RRAG----C 205
Query: 115 FPAWIIVCVL-KACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADF 173
P CV AC + ++LG+Q+HG + + G +++S+ LI+FYGK + + A+
Sbjct: 206 EPDSTTFCVFFNACADQLYVDLGRQLHGFVIRSGFEKSVSVLNGLIDFYGKCKEVRLAEM 265
Query: 174 VFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDD 233
VF +++ N V W + + + G + F E +E I+ Y SSV+ AC G+
Sbjct: 266 VFGKMENRNAVSWCSMVAACEQNGEEEKACLFFVEGRKEGIEPTDYMVSSVISACAGLAG 325
Query: 234 DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
GR HA VK LE D +V LVDMYGKC + D+E+ F + ++N+ +WNA++
Sbjct: 326 L-ELGRSFHALAVKACLEGDIFVGSALVDMYGKCGGIEDSEQAFHEM-SERNLVTWNALI 383
Query: 294 VGYIRNG 300
GY G
Sbjct: 384 GGYAHQG 390
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 81/298 (27%), Positives = 131/298 (43%), Gaps = 14/298 (4%)
Query: 43 KPTLLFL-NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFA 101
P FL N L+ M+ ++A+ + P R +W +I G V + + F
Sbjct: 38 SPLPPFLSNHLISMYSKLDLPNSAQLVLHLTPTRSVVTWTSLISGSVQNGHFSFALYHFF 97
Query: 102 EMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINF 161
M + FP C KA + +GKQ+H + K G ++ + S +
Sbjct: 98 NMRRDNIQPNDFTFP-----CAFKASASLLLPFVGKQIHAIAVKFGQINDVFVGCSAFDM 152
Query: 162 YGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTF 221
Y K +DA +F +L N V W A I N G + F E+ R + +S TF
Sbjct: 153 YSKTGLKQDAQKLFDELPERNVVTWNAYISNAVLYGRYQNAAVAFVELRRAGCEPDSTTF 212
Query: 222 SSVLKACGG---VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE 278
AC VD GRQ+H +++ G E V GL+D YGKC+ +R AE VF
Sbjct: 213 CVFFNACADQLYVD----LGRQLHGFVIRSGFEKSVSVLNGLIDFYGKCKEVRLAEMVFG 268
Query: 279 LIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+ + +N SW +M+ +NG +A F + GI+ + +++ + AC+ ++
Sbjct: 269 KM-ENRNAVSWCSMVAACEQNGEEEKACLFFVEGRKEGIEPTDYMVSSVISACAGLAG 325
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 94/197 (47%), Gaps = 4/197 (2%)
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFK-LGSSRNISLTGSLINFYGKFRCLEDADFVFSQL 178
+ +L++ + T + LG+ H + K S L+ LI+ Y K A V
Sbjct: 9 LAPILESAISTRSSFLGRATHARIIKTFQSPLPPFLSNHLISMYSKLDLPNSAQLVLHLT 68
Query: 179 KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCG 238
+ V WT+ I + + GHF F M R+ I+ N +TF KA + G
Sbjct: 69 PTRSVVTWTSLISGSVQNGHFSFALYHFFNMRRDNIQPNDFTFPCAFKASASLLLP-FVG 127
Query: 239 RQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIR 298
+Q+HA VK G +D +V C DMY K L +DA+++F+ + ++N+ +WNA + +
Sbjct: 128 KQIHAIAVKFGQINDVFVGCSAFDMYSKTGLKQDAQKLFDEL-PERNVVTWNAYISNAVL 186
Query: 299 NGLYVEAT-KFLYLMKA 314
G Y A F+ L +A
Sbjct: 187 YGRYQNAAVAFVELRRA 203
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 88/192 (45%), Gaps = 8/192 (4%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R + ++ LN L+ + C ++ A +F +M R+ SW M+ + ++
Sbjct: 237 RSGFEKSVSVLNGLIDFYGKCKEVRLAEMVFGKMENRNAVSWCSMVAACEQNGEEEKACL 296
Query: 99 LFAEMMKRKKGHMLLVFPA-WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGS 157
F E RK+G + P +++ V+ AC +ELG+ H L K +I + +
Sbjct: 297 FFVE--GRKEG----IEPTDYMVSSVISACAGLAGLELGRSFHALAVKACLEGDIFVGSA 350
Query: 158 LINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKN 217
L++ YGK +ED++ F ++ N V W A I +GH FKEM E + N
Sbjct: 351 LVDMYGKCGGIEDSEQAFHEMSERNLVTWNALIGGYAHQGHAEMAVRLFKEMTTE-VVPN 409
Query: 218 SYTFSSVLKACG 229
T VL ACG
Sbjct: 410 YVTLVCVLSACG 421
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 10/119 (8%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ CG ++ + Q F EM R+ +W +I GY + + LF EM
Sbjct: 351 LVDMYGKCGGIEDSEQAFHEMSERNLVTWNALIGGYAHQGHAEMAVRLFKEMTTE----- 405
Query: 112 LLVFPAWI-IVCVLKACVCTMNMELGKQVHGLL--FKLGSSRNISLTGSLINFYGKFRC 167
V P ++ +VCVL AC +ELG ++ G + + S RN + L Y C
Sbjct: 406 --VVPNYVTLVCVLSACGRGGAVELGMEIFGSMRDRRTLSQRNTKVKDKLTILYASIPC 462
>gi|302804037|ref|XP_002983771.1| hypothetical protein SELMODRAFT_180422 [Selaginella moellendorffii]
gi|300148608|gb|EFJ15267.1| hypothetical protein SELMODRAFT_180422 [Selaginella moellendorffii]
Length = 492
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 93/344 (27%), Positives = 155/344 (45%), Gaps = 23/344 (6%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRV--------NIKPTLLFLNRL 52
MD +P + I D A A + +R+ V + ++ +
Sbjct: 49 MDQQGIPAESATLVSAIGAIAGIGDLALARAIEVRVRRTVLDRIIVAGGARSDVIVETAM 108
Query: 53 LLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHML 112
+ M CG + A +FD + R+ SW MI + +E + L+ M +
Sbjct: 109 INMFSKCGAVIEALAVFDRIQDRNLVSWNAMITAFAQNGHRREAVELYRRMEEEGIRADE 168
Query: 113 LVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDAD 172
+P+ VL AC ++ G+ +H + G ++ + +L++ +G+F LE A
Sbjct: 169 STYPS-----VLGAC---QSLAEGRSIHARICSAGLELDVVVGSALVSMHGRFGALEAAR 220
Query: 173 FVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVD 232
VF +++ N + W A I + GH Q + F MG RIK NS TF +VL+AC +
Sbjct: 221 DVFDRMEHKNVITWCAMISAYAQNGHPRQALDGFARMG--RIKPNSVTFLAVLEAC-SLL 277
Query: 233 DDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELI----VDKKNIAS 288
D GR +H IV+ G + +E V GL++MYGKC DA VF+ + + + S
Sbjct: 278 GDLEIGRGVHGQIVEAGFDGEENVSNGLINMYGKCGSWSDARVVFDAARRSSLRRNTVVS 337
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
WN+M+ Y + G EA + M+ G + + ++ ACS
Sbjct: 338 WNSMIEAYAQLGHANEAVEVFQEMRLDGTKPDQVTFLEMMFACS 381
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 121/255 (47%), Gaps = 19/255 (7%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+ CG+L AR+ FD + + SWA+++ YV + + LF M ++ +
Sbjct: 1 MYGRCGELSRAREAFDAIEEPNLFSWAILMAAYVLNGHDRAALRLFRAMDQQG-----IP 55
Query: 115 FPAWIIVCVLKACVCTMNMELGKQVH---------GLLFKLGSSRNISLTGSLINFYGKF 165
+ +V + A ++ L + + ++ G+ ++ + ++IN + K
Sbjct: 56 AESATLVSAIGAIAGIGDLALARAIEVRVRRTVLDRIIVAGGARSDVIVETAMINMFSKC 115
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
+ +A VF +++ N V W A I + GH + ++ M E I+ + T+ SVL
Sbjct: 116 GAVIEALAVFDRIQDRNLVSWNAMITAFAQNGHRREAVELYRRMEEEGIRADESTYPSVL 175
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
AC + + GR +HA I GLE D V LV M+G+ L A VF+ + + KN
Sbjct: 176 GACQSLAE----GRSIHARICSAGLELDVVVGSALVSMHGRFGALEAARDVFDRM-EHKN 230
Query: 286 IASWNAMLVGYIRNG 300
+ +W AM+ Y +NG
Sbjct: 231 VITWCAMISAYAQNG 245
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 115/259 (44%), Gaps = 36/259 (13%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ MH G L+ AR +FD M ++ +W MI Y ++ + FA M + K +
Sbjct: 206 LVSMHGRFGALEAARDVFDRMEHKNVITWCAMISAYAQNGHPRQALDGFARMGRIKPNSV 265
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+ VL+AC ++E+G+ VHG + + G +++ LIN YGK DA
Sbjct: 266 TFL-------AVLEACSLLGDLEIGRGVHGQIVEAGFDGEENVSNGLINMYGKCGSWSDA 318
Query: 172 DFVF-----SQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
VF S L+R+ V W + I + GH ++ F+EM + K + TF ++
Sbjct: 319 RVVFDAARRSSLRRNTVVSWNSMIEAYAQLGHANEAVEVFQEMRLDGTKPDQVTFLEMMF 378
Query: 227 ACGGVDDDGNCGRQMHANIVKIGL-------ESDEYVQCG-----LVDMYGKCRLLRDAE 274
AC HA +V+ G+ + G LVD+ G+ +R AE
Sbjct: 379 ACS------------HAGLVEQGIFCFLSMVRDERLTPSGDHWRSLVDLLGRAGWIRGAE 426
Query: 275 RVFELIVDKKNIASWNAML 293
+V + + + +W ++
Sbjct: 427 QVVKDMAGSADPVAWTTLI 445
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 81/187 (43%), Gaps = 11/187 (5%)
Query: 161 FYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYT 220
YG+ L A F ++ N W + GH F+ M ++ I S T
Sbjct: 1 MYGRCGELSRAREAFDAIEEPNLFSWAILMAAYVLNGHDRAALRLFRAMDQQGIPAESAT 60
Query: 221 FSSVLKACGGVDDDGNCGRQMHAN---------IVKIGLESDEYVQCGLVDMYGKCRLLR 271
S + A G+ D R + IV G SD V+ +++M+ KC +
Sbjct: 61 LVSAIGAIAGIGDLA-LARAIEVRVRRTVLDRIIVAGGARSDVIVETAMINMFSKCGAVI 119
Query: 272 DAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
+A VF+ I D+ N+ SWNAM+ + +NG EA + M+ GI+ ES + AC
Sbjct: 120 EALAVFDRIQDR-NLVSWNAMITAFAQNGHRREAVELYRRMEEEGIRADESTYPSVLGAC 178
Query: 332 SSISASK 338
S++ +
Sbjct: 179 QSLAEGR 185
>gi|242092564|ref|XP_002436772.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
gi|241914995|gb|EER88139.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
Length = 825
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 85/282 (30%), Positives = 139/282 (49%), Gaps = 7/282 (2%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL M+ CG ++ AR +F+ +P D W+ +I Y ++ +F MM+
Sbjct: 292 LLDMYAKCGYIEDARTVFEIIPHDDVILWSFLISRYAQSYQNEQAFEMFLRMMRSS---- 347
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+V + + VL+AC ++LG+Q+H L+ KLG + + +L++ Y K R +E++
Sbjct: 348 -VVPNEFSLSGVLQACANVAFLDLGQQIHNLVIKLGYESELFVGNALMDVYAKCRNMENS 406
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
+F L+ N V W IV C+ G + F+EM + TFSSVL+AC
Sbjct: 407 LEIFRSLRDANEVSWNTIIVGYCQSGFAEDALSVFQEMRAAHVLSTQVTFSSVLRACANT 466
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
+ Q+H+ I K +D V L+D Y KC +RDA +VFE I+ + ++ SWNA
Sbjct: 467 ASIKHT-VQIHSLIEKSTFNNDTIVCNSLIDTYAKCGCIRDALKVFESII-QCDVVSWNA 524
Query: 292 MLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSS 333
++ GY +G +A + M S + + L C S
Sbjct: 525 IISGYALHGRATDALELFNRMNKSDTKPNDVTFVALLSVCGS 566
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 79/280 (28%), Positives = 141/280 (50%), Gaps = 7/280 (2%)
Query: 59 CGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAW 118
CG + AR +FD + +D +W M+ Y + ++ + F++M R G F
Sbjct: 198 CGAVSHARCVFDGIIWKDAVTWTAMVSCYSENDIPEDALNTFSKM--RMAGAKPNPF--- 252
Query: 119 IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL 178
++ VLKA VC + LGK +HG K + G+L++ Y K +EDA VF +
Sbjct: 253 VLTSVLKAAVCLSSAVLGKGIHGCAVKTLCDTEPHVGGALLDMYAKCGYIEDARTVFEII 312
Query: 179 KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCG 238
+ ++W+ I + Q F F M R + N ++ S VL+AC V + G
Sbjct: 313 PHDDVILWSFLISRYAQSYQNEQAFEMFLRMMRSSVVPNEFSLSGVLQACANV-AFLDLG 371
Query: 239 RQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIR 298
+Q+H ++K+G ES+ +V L+D+Y KCR + ++ +F + D + SWN ++VGY +
Sbjct: 372 QQIHNLVIKLGYESELFVGNALMDVYAKCRNMENSLEIFRSLRDANEV-SWNTIIVGYCQ 430
Query: 299 NGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASK 338
+G +A M+A+ + + + + AC++ ++ K
Sbjct: 431 SGFAEDALSVFQEMRAAHVLSTQVTFSSVLRACANTASIK 470
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 93/339 (27%), Positives = 159/339 (46%), Gaps = 13/339 (3%)
Query: 1 MDNLCLPITTDMYTC--LIKECTFQKDSAGAFELLNHIRKRVNIKPTLLF-LNRLLLMHV 57
+ +L LP D Y C L++ C + D+ + + +R + F N LL ++
Sbjct: 37 LASLALP-KLDSYACARLLQRCIARGDARAGRAVHARVVQRGGVAQLDTFCANVLLNLYA 95
Query: 58 SCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPA 117
G L AR+LFD MP R+ S+ ++ GY ++E LF + +++GH + F
Sbjct: 96 KLGPLAAARRLFDGMPERNMVSFVTLVQGYALRGGFEEAAGLFRRL--QREGHEVNHF-- 151
Query: 118 WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQ 177
++ +LK V L +H KLG RN + SLI+ Y + A VF
Sbjct: 152 -VLTTILKVLVAMDAPGLTCCIHACACKLGHDRNAFVGSSLIDAYSLCGAVSHARCVFDG 210
Query: 178 LKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC 237
+ + V WTA + N F +M K N + +SVLKA +
Sbjct: 211 IIWKDAVTWTAMVSCYSENDIPEDALNTFSKMRMAGAKPNPFVLTSVLKAAVCL-SSAVL 269
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYI 297
G+ +H VK +++ +V L+DMY KC + DA VFE I+ ++ W+ ++ Y
Sbjct: 270 GKGIHGCAVKTLCDTEPHVGGALLDMYAKCGYIEDARTVFE-IIPHDDVILWSFLISRYA 328
Query: 298 RNGLYVEATK-FLYLMKASGIQIQESLINDLRIACSSIS 335
++ +A + FL +M++S + + SL L+ AC++++
Sbjct: 329 QSYQNEQAFEMFLRMMRSSVVPNEFSLSGVLQ-ACANVA 366
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 116/262 (44%), Gaps = 19/262 (7%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFN--SWAVMIVGYVDVADYQEC 96
++ + L N L+ ++ C ++ + ++F LRD N SW +IVGY ++
Sbjct: 380 KLGYESELFVGNALMDVYAKCRNMENSLEIFRS--LRDANEVSWNTIIVGYCQSGFAEDA 437
Query: 97 ITLFAEMMKRKKGHML---LVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNIS 153
+++F EM + H+L + F + VL+AC T +++ Q+H L+ K + +
Sbjct: 438 LSVFQEM---RAAHVLSTQVTFSS-----VLRACANTASIKHTVQIHSLIEKSTFNNDTI 489
Query: 154 LTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRER 213
+ SLI+ Y K C+ DA VF + + + V W A I G F M +
Sbjct: 490 VCNSLIDTYAKCGCIRDALKVFESIIQCDVVSWNAIISGYALHGRATDALELFNRMNKSD 549
Query: 214 IKKNSYTFSSVLKACG--GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLR 271
K N TF ++L CG G+ + G +I D Y C +V + G+ L
Sbjct: 550 TKPNDVTFVALLSVCGSTGLVNQGLSLFNSMTMDHRIKPSMDHYT-C-IVRLLGRAGRLN 607
Query: 272 DAERVFELIVDKKNIASWNAML 293
DA + I + W A+L
Sbjct: 608 DALKFIGDIPSTPSPMVWRALL 629
>gi|449444429|ref|XP_004139977.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
mitochondrial-like [Cucumis sativus]
gi|449475689|ref|XP_004154524.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
mitochondrial-like [Cucumis sativus]
Length = 586
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 94/320 (29%), Positives = 156/320 (48%), Gaps = 12/320 (3%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
Y+ LIK C + A + H+ +P +N L+ M+V G LD AR LFDEM
Sbjct: 19 YSELIKCCLVRGAVQQARLVHEHVFSN-GYEPKTFLINTLINMYVKFGLLDEARNLFDEM 77
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN 132
P R+ SW MI Y + + + M++ + + + VL+AC +N
Sbjct: 78 PDRNVVSWTTMISAYSNSNLNHKALDFLILMLREGVRPNMYTYSS-----VLRACDGLLN 132
Query: 133 MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192
+ +Q+HG + K+G ++ + +LI+ Y K DA VF+++ + VVW + I
Sbjct: 133 L---RQLHGSILKVGLESDVFVRSALIDTYSKLGEQHDALNVFNEMITGDLVVWNSIIGG 189
Query: 193 NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLES 252
+ + + +K M R + T +SVL+AC G+ GRQ+H +++K +
Sbjct: 190 FAQNSDGDETLHLYKRMKRADFVADQSTLTSVLRACTGLAL-LELGRQVHVHVLK--YDQ 246
Query: 253 DEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLM 312
D + L+DMY KC L DA +F ++ +K++ SW+ M+ G +NG +A K M
Sbjct: 247 DLILNNALLDMYCKCGSLEDANLLFTRMMTEKDVISWSTMIAGLAQNGFSADALKLFEAM 306
Query: 313 KASGIQIQESLINDLRIACS 332
K+ G + I + ACS
Sbjct: 307 KSKGPKPNYITILGVLFACS 326
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 108/213 (50%), Gaps = 5/213 (2%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
++K C+ ++ + VH +F G L +LIN Y KF L++A +F ++ N
Sbjct: 22 LIKCCLVRGAVQQARLVHEHVFSNGYEPKTFLINTLINMYVKFGLLDEARNLFDEMPDRN 81
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
V WT I H+ + M RE ++ N YT+SSVL+AC G+ + RQ+H
Sbjct: 82 VVSWTTMISAYSNSNLNHKALDFLILMLREGVRPNMYTYSSVLRACDGLLN----LRQLH 137
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
+I+K+GLESD +V+ L+D Y K DA VF ++ ++ WN+++ G+ +N
Sbjct: 138 GSILKVGLESDVFVRSALIDTYSKLGEQHDALNVFNEMI-TGDLVVWNSIIGGFAQNSDG 196
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
E MK + +S + + AC+ ++
Sbjct: 197 DETLHLYKRMKRADFVADQSTLTSVLRACTGLA 229
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 64/132 (48%), Gaps = 8/132 (6%)
Query: 206 FKEMGRERIKKNSYTFSSVLKAC---GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVD 262
+ M R R+ ++ T+S ++K C G V R +H ++ G E ++ L++
Sbjct: 4 MEAMHRNRLSADAITYSELIKCCLVRGAVQQ----ARLVHEHVFSNGYEPKTFLINTLIN 59
Query: 263 MYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQES 322
MY K LL +A +F+ + D +N+ SW M+ Y + L +A FL LM G++
Sbjct: 60 MYVKFGLLDEARNLFDEMPD-RNVVSWTTMISAYSNSNLNHKALDFLILMLREGVRPNMY 118
Query: 323 LINDLRIACSSI 334
+ + AC +
Sbjct: 119 TYSSVLRACDGL 130
>gi|15222917|ref|NP_175445.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213175|sp|Q9SX45.1|PPR75_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g50270
gi|5734776|gb|AAD50041.1|AC007980_6 Hypothetical protein [Arabidopsis thaliana]
gi|332194410|gb|AEE32531.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 596
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 95/315 (30%), Positives = 150/315 (47%), Gaps = 9/315 (2%)
Query: 19 ECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFN 78
+ F+ + F+ HI K + N L+ + S G D A +LFD +D
Sbjct: 112 KAVFKLRDSNPFQFHAHIVK-FGLDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVV 170
Query: 79 SWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQ 138
+W MI G+V E + F EM +K G + +V VLKA ++ G+
Sbjct: 171 TWTAMIDGFVRNGSASEAMVYFVEM--KKTG---VAANEMTVVSVLKAAGKVEDVRFGRS 225
Query: 139 VHGLLFKLGSSR-NISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREG 197
VHGL + G + ++ + SL++ YGK C +DA VF ++ N V WTA I +
Sbjct: 226 VHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSR 285
Query: 198 HFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQ 257
F + F+EM + + N T SSVL AC V + GR++H ++K +E +
Sbjct: 286 CFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGA-LHRGRRVHCYMIKNSIEINTTAG 344
Query: 258 CGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGI 317
L+D+Y KC L +A VFE + +KN+ +W AM+ G+ +G +A Y M +S +
Sbjct: 345 TTLIDLYVKCGCLEEAILVFERL-HEKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHV 403
Query: 318 QIQESLINDLRIACS 332
E + AC+
Sbjct: 404 SPNEVTFMAVLSACA 418
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 72/247 (29%), Positives = 116/247 (46%), Gaps = 11/247 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+ L+ M+ C D A+++FDEMP R+ +W +I GYV + + + +F EM+K
Sbjct: 244 SSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSD-- 301
Query: 110 HMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
V P + VL AC + G++VH + K N + +LI+ Y K CL
Sbjct: 302 ----VAPNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCL 357
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
E+A VF +L N WTA I G+ F+ F M + N TF +VL AC
Sbjct: 358 EEAILVFERLHEKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSAC 417
Query: 229 --GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
GG+ ++G R + + +E +VD++G+ LL +A+ + E + +
Sbjct: 418 AHGGLVEEGR--RLFLSMKGRFNMEPKADHYACMVDLFGRKGLLEEAKALIERMPMEPTN 475
Query: 287 ASWNAML 293
W A+
Sbjct: 476 VVWGALF 482
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 77/292 (26%), Positives = 128/292 (43%), Gaps = 8/292 (2%)
Query: 47 LFLNRLLLMHVSCG-QLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
LFL+RLL + Q AR+L ++ W +I + ++ A
Sbjct: 36 LFLSRLLRRCCTAATQFRYARRLLCQLQTLSIQLWDSLIGHFSGGITLNRRLSFLAYRHM 95
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
R+ G V P+ L V + Q H + K G + + SLI+ Y
Sbjct: 96 RRNG----VIPSRHTFPPLLKAVFKLRDSNPFQFHAHIVKFGLDSDPFVRNSLISGYSSS 151
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
+ A +F + + V WTA I R G + F EM + + N T SVL
Sbjct: 152 GLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEAMVYFVEMKKTGVAANEMTVVSVL 211
Query: 226 KACGGVDDDGNCGRQMHANIVKIG-LESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
KA G V +D GR +H ++ G ++ D ++ LVDMYGKC DA++VF+ + +
Sbjct: 212 KAAGKV-EDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEM-PSR 269
Query: 285 NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
N+ +W A++ GY+++ + + M S + E ++ + AC+ + A
Sbjct: 270 NVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGA 321
>gi|224127716|ref|XP_002320145.1| predicted protein [Populus trichocarpa]
gi|222860918|gb|EEE98460.1| predicted protein [Populus trichocarpa]
Length = 548
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 91/296 (30%), Positives = 155/296 (52%), Gaps = 17/296 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDV--ADYQECITL----FAEM 103
N++L +++ C + A +LFDEM +R+ +W +I G VD +DY+ + + F +M
Sbjct: 27 NQILNVYIKCKDFNYAHRLFDEMHVRNVVTWNTVICGLVDCRGSDYESSVYMGFCYFRKM 86
Query: 104 MKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYG 163
+ K G F A + +L+AC+ ++E+G+++H + KLG + N + +L++ YG
Sbjct: 87 LLDKVG-----FDAITLNGLLRACLELNDVEIGRELHCFIVKLGFAVNSFVNSALVDLYG 141
Query: 164 KFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSS 223
K +++A F ++ + V+W + + FK M E + +TFSS
Sbjct: 142 KCGLVKEARRAFDEVYCRDLVLWNVMLSCYAMNCLAEEASGFFKLMQEENFMTDGFTFSS 201
Query: 224 VLKACGGVDDDGNC--GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIV 281
+L +CG + G+C GRQ+H +K+ + D V GLVDMY K + DA + F+ +
Sbjct: 202 MLNSCGTL---GSCNLGRQIHGLSIKLSFDLDVLVASGLVDMYAKSENIDDARKAFDGMA 258
Query: 282 DKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISAS 337
+N+ SWN M+VGY R G EA K L M ++ E + + +CSS S
Sbjct: 259 -ARNVVSWNTMVVGYGRLGDGGEAMKLLIGMFQEDLRPDEITLASIIRSCSSALTS 313
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 106/207 (51%), Gaps = 8/207 (3%)
Query: 136 GKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN--N 193
GKQVH + KLG +SL ++N Y K + A +F ++ N V W I +
Sbjct: 7 GKQVHSHVIKLGFCNVLSLQNQILNVYIKCKDFNYAHRLFDEMHVRNVVTWNTVICGLVD 66
Query: 194 CR----EGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIG 249
CR E + F F++M +++ ++ T + +L+AC ++D GR++H IVK+G
Sbjct: 67 CRGSDYESSVYMGFCYFRKMLLDKVGFDAITLNGLLRACLELNDV-EIGRELHCFIVKLG 125
Query: 250 LESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFL 309
+ +V LVD+YGKC L+++A R F+ + +++ WN ML Y N L EA+ F
Sbjct: 126 FAVNSFVNSALVDLYGKCGLVKEARRAFDEVY-CRDLVLWNVMLSCYAMNCLAEEASGFF 184
Query: 310 YLMKASGIQIQESLINDLRIACSSISA 336
LM+ + + +C ++ +
Sbjct: 185 KLMQEENFMTDGFTFSSMLNSCGTLGS 211
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/286 (22%), Positives = 126/286 (44%), Gaps = 8/286 (2%)
Query: 48 FLNRLLL-MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR 106
F+N L+ ++ CG + AR+ FDE+ RD W VM+ Y +E F M +
Sbjct: 131 FVNSALVDLYGKCGLVKEARRAFDEVYCRDLVLWNVMLSCYAMNCLAEEASGFFKLMQEE 190
Query: 107 KKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166
+ + +L +C + LG+Q+HGL KL ++ + L++ Y K
Sbjct: 191 N-----FMTDGFTFSSMLNSCGTLGSCNLGRQIHGLSIKLSFDLDVLVASGLVDMYAKSE 245
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
++DA F + N V W +V R G + M +E ++ + T +S+++
Sbjct: 246 NIDDARKAFDGMAARNVVSWNTMVVGYGRLGDGGEAMKLLIGMFQEDLRPDEITLASIIR 305
Query: 227 ACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
+C Q++A ++K G + + L++ Y K + A + F +++ ++
Sbjct: 306 SCSSALTSCEI-MQVNAYVLKNGFHAFLSIANALINAYSKGGSIAMALQCFNTVLE-PDL 363
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+W +++ Y + L + M A G+ + + ++ ACS
Sbjct: 364 VTWTSLIGAYAFHSLPKNSIDTFEEMLADGVWPDQIVFLEVLSACS 409
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 67/283 (23%), Positives = 116/283 (40%), Gaps = 44/283 (15%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
+++ +L + L+ M+ +D AR+ FD M R+ SW M+VGY + D E +
Sbjct: 224 KLSFDLDVLVASGLVDMYAKSENIDDARKAFDGMAARNVVSWNTMVVGYGRLGDGGEAMK 283
Query: 99 LFAEMMKRKKGHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGS 157
L M + + P I + ++++C + QV+ + K G +S+ +
Sbjct: 284 LLIGMFQED------LRPDEITLASIIRSCSSALTSCEIMQVNAYVLKNGFHAFLSIANA 337
Query: 158 LINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKN 217
LIN Y K + A F+ + + V WT+ I + F+EM + + +
Sbjct: 338 LINAYSKGGSIAMALQCFNTVLEPDLVTWTSLIGAYAFHSLPKNSIDTFEEMLADGVWPD 397
Query: 218 SYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLE-----SDEYVQCG------LVDMYGK 266
F VL AC HA +V GL D ++ G L+D+ G+
Sbjct: 398 QIVFLEVLSACS------------HAGLVNEGLHYFSLMKDYHILPGLEHYTCLIDLLGR 445
Query: 267 CRLLRDAERVFELIVDKKNIASWNAMLVGYIRN--GLYVEATK 307
LL +A + N+M +GY + G ++ A K
Sbjct: 446 AGLLDEAFNIL------------NSMSIGYSSDTLGAFIGACK 476
>gi|147772562|emb|CAN67343.1| hypothetical protein VITISV_038220 [Vitis vinifera]
Length = 732
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 79/254 (31%), Positives = 135/254 (53%), Gaps = 7/254 (2%)
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI 119
G ++ AR +FD++ + +W +I GY + LFA+M + +V ++
Sbjct: 86 GBIEVARLVFDQLLEKTAVTWTTIIAGYTKCGRSXVSLELFAQMRETN-----VVPDRYV 140
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
+ VL AC +E GKQ+H + + G+ ++S+ LI+FY K ++ +F Q+
Sbjct: 141 VSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMV 200
Query: 180 RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGR 239
N + WT I + + F EM R K + + +SVL +CG ++ GR
Sbjct: 201 VKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSLEALEQ-GR 259
Query: 240 QMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRN 299
Q+HA +K LES+E+V+ GL+DMY K LL DA++VF+++ + +N+ S+NAM+ GY
Sbjct: 260 QVHAYTIKANLESNEFVKNGLIDMYAKSNLLXDAKKVFDVMAE-QNVISYNAMIEGYSSQ 318
Query: 300 GLYVEATKFLYLMK 313
EA + + M+
Sbjct: 319 EKLSEALELFHEMR 332
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 90/319 (28%), Positives = 147/319 (46%), Gaps = 13/319 (4%)
Query: 20 CTFQKDSAGAFELLNHIRK------RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMP 73
CT S G+ E L R+ + N++ N L+ M+ L A+++FD M
Sbjct: 242 CTSVLTSCGSLEALEQGRQVHAYTIKANLESNEFVKNGLIDMYAKSNLLXDAKKVFDVMA 301
Query: 74 LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNM 133
++ S+ MI GY E + LF EM R LL F V +L +
Sbjct: 302 EQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTF-----VSLLGVSASLFAL 356
Query: 134 ELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNN 193
EL KQ+HGL+ K G S ++ +LI+ Y K ++DA VF ++ + VVW A
Sbjct: 357 ELSKQIHGLIIKXGVSLDLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFGY 416
Query: 194 CREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESD 253
+ + + + R K N +TF++++ A + + G+Q H +VK+GL+
Sbjct: 417 TQHLENEEALKLYSTLQFSRQKPNEFTFAALITAASNLASLRH-GQQFHNQLVKMGLDFC 475
Query: 254 EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMK 313
+V LVDMY KC + +A ++F + +++ WN+M+ + ++G EA M
Sbjct: 476 PFVTNALVDMYAKCGSIEEARKMFNSSI-WRDVVCWNSMISTHAQHGEAEEALGMFREMM 534
Query: 314 ASGIQIQESLINDLRIACS 332
GIQ + ACS
Sbjct: 535 KEGIQPNYVTFVAVLSACS 553
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 82/289 (28%), Positives = 132/289 (45%), Gaps = 9/289 (3%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
+N L+ + C ++ R+LFD+M +++ SW MI GY+ + E + LF EM +
Sbjct: 176 VNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNR--- 232
Query: 109 GHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
L P + VL +C +E G+QVH K N + LI+ Y K
Sbjct: 233 ---LGWKPDGFACTSVLTSCGSLEALEQGRQVHAYTIKANLESNEFVKNGLIDMYAKSNL 289
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
L DA VF + N + + A I + + F EM + TF S+L
Sbjct: 290 LXDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGV 349
Query: 228 CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
+ +Q+H I+K G+ D + L+D+Y KC ++DA VFE + ++K+I
Sbjct: 350 SASLFAL-ELSKQIHGLIIKXGVSLDLFAGSALIDVYSKCSYVKDARHVFEEM-NEKDIV 407
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
WNAM GY ++ EA K ++ S + E L A S++++
Sbjct: 408 VWNAMFFGYTQHLENEEALKLYSTLQFSRQKPNEFTFAALITAASNLAS 456
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 72/245 (29%), Positives = 120/245 (48%), Gaps = 10/245 (4%)
Query: 94 QECITLFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNI 152
+E + +F ++ ++ H P +++ V++AC +E G Q+HG + + G +++
Sbjct: 18 EEALMVFVDLQRKSGEH-----PNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDV 72
Query: 153 SLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRE 212
+ SLI+FY K +E A VF QL V WT I + G F +M
Sbjct: 73 YVGTSLIDFYSKNGBIEVARLVFDQLLEKTAVTWTTIIAGYTKCGRSXVSLELFAQMRET 132
Query: 213 RIKKNSYTFSSVLKACGGVDD-DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLR 271
+ + Y SSVL AC ++ +G G+Q+HA +++ G E D V L+D Y KC ++
Sbjct: 133 NVVPDRYVVSSVLSACSMLEFLEG--GKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVK 190
Query: 272 DAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
++F+ +V KNI SW M+ GY++N EA K M G + + +C
Sbjct: 191 AGRKLFDQMV-VKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSC 249
Query: 332 SSISA 336
S+ A
Sbjct: 250 GSLEA 254
>gi|218186652|gb|EEC69079.1| hypothetical protein OsI_37958 [Oryza sativa Indica Group]
Length = 459
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 87/296 (29%), Positives = 146/296 (49%), Gaps = 17/296 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N LL + +CG+ AR++FDEMP RD SW ++ ++ + + MM+
Sbjct: 160 NTLLAFYAACGKACDARRVFDEMPARDVVSWNSLVSAFLVNGMFHDTRRALVSMMRSG-- 217
Query: 110 HMLLVFPAWI--IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
FP + +V V+ AC + G +H L K+G + ++L +L++ YGKF
Sbjct: 218 -----FPLNVASLVSVVPACGMEQEEKFGLSIHALAVKVGLNTMVNLANALVDMYGKFGD 272
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
+E + VF + N V W + I G + V F++M + S T SS+L A
Sbjct: 273 VEASMRVFDGMLEQNEVSWNSAIGCFLNAGLYGDVLRMFRKMSEHNVMPGSITLSSLLPA 332
Query: 228 ---CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
G +D GR++H +K ++ D +V LVDMY K L A +FE + D +
Sbjct: 333 LVELGSID----LGREVHGYSIKRAMDLDIFVANSLVDMYAKFGSLEKASTIFEQMKD-R 387
Query: 285 NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKIN 340
N+ SWNAM+ ++NG EA + + M+ SG + ++ AC+ +++ K++
Sbjct: 388 NVVSWNAMIANLVQNGAETEAFRLVTDMQKSGECPNSITLVNVLPACARMASLKMD 443
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 103/224 (45%), Gaps = 8/224 (3%)
Query: 7 PITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTAR 66
P+ ++ C +++ + + + +V + + N L+ M+ G ++ +
Sbjct: 219 PLNVASLVSVVPACGMEQEEKFGLSI-HALAVKVGLNTMVNLANALVDMYGKFGDVEASM 277
Query: 67 QLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVC-VLK 125
++FD M ++ SW I +++ Y + + +F +M + V P I + +L
Sbjct: 278 RVFDGMLEQNEVSWNSAIGCFLNAGLYGDVLRMFRKMSEHN------VMPGSITLSSLLP 331
Query: 126 ACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVV 185
A V +++LG++VHG K +I + SL++ Y KF LE A +F Q+K N V
Sbjct: 332 ALVELGSIDLGREVHGYSIKRAMDLDIFVANSLVDMYAKFGSLEKASTIFEQMKDRNVVS 391
Query: 186 WTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
W A I N + G + F +M + NS T +VL AC
Sbjct: 392 WNAMIANLVQNGAETEAFRLVTDMQKSGECPNSITLVNVLPACA 435
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 79/167 (47%), Gaps = 2/167 (1%)
Query: 136 GKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCR 195
G ++H + G ++ +L+ FY DA VF ++ + V W + +
Sbjct: 140 GLELHASALRRGHLADVFTGNTLLAFYAACGKACDARRVFDEMPARDVVSWNSLVSAFLV 199
Query: 196 EGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEY 255
G FH M R N + SV+ AC G++ + G +HA VK+GL +
Sbjct: 200 NGMFHDTRRALVSMMRSGFPLNVASLVSVVPAC-GMEQEEKFGLSIHALAVKVGLNTMVN 258
Query: 256 VQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
+ LVDMYGK + + RVF+ ++++ + SWN+ + ++ GLY
Sbjct: 259 LANALVDMYGKFGDVEASMRVFDGMLEQNEV-SWNSAIGCFLNAGLY 304
>gi|356553819|ref|XP_003545249.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Glycine max]
Length = 608
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 90/297 (30%), Positives = 144/297 (48%), Gaps = 18/297 (6%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR--- 106
+ L+ M+ CG++ AR++FDE+P RD SW MI GY +E + +F EM +R
Sbjct: 155 HSLITMYSRCGRVAFARKVFDEIPRRDLVSWNSMIAGYAKAGCAREAVEVFGEMGRRDGF 214
Query: 107 KKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166
+ M LV VL AC ++ELG+ V G + + G + N + +LI+ Y K
Sbjct: 215 EPDEMSLV-------SVLGACGELGDLELGRWVEGFVVERGMTLNSYIGSALISMYAKCG 267
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
L A +F + + + W A I + G + + F M + + +N T ++VL
Sbjct: 268 DLGSARRIFDGMAARDVITWNAVISGYAQNGMADEAISLFHAMKEDCVTENKITLTAVLS 327
Query: 227 AC---GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
AC G +D G+Q+ + G + D +V L+DMY KC L A+RVF+ + +
Sbjct: 328 ACATIGALD----LGKQIDEYASQRGFQHDIFVATALIDMYAKCGSLASAQRVFKEM-PQ 382
Query: 284 KNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKIN 340
KN ASWNAM+ +G EA M G + + I + + + + A +N
Sbjct: 383 KNEASWNAMISALASHGKAKEALSLFQCMSDEGGGARPNDITFVGLLSACVHAGLVN 439
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 67/245 (27%), Positives = 113/245 (46%), Gaps = 8/245 (3%)
Query: 93 YQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNI 152
Y +TLF MM + L + +C + + H L+FKL +
Sbjct: 97 YPLALTLFHRMMS-----LSLSPNNFTFPFFFLSCANLAVLSPARAAHSLVFKLALHSDP 151
Query: 153 SLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMG-R 211
T SLI Y + + A VF ++ R + V W + I + G + F EMG R
Sbjct: 152 HTTHSLITMYSRCGRVAFARKVFDEIPRRDLVSWNSMIAGYAKAGCAREAVEVFGEMGRR 211
Query: 212 ERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLR 271
+ + + + SVL ACG + D GR + +V+ G+ + Y+ L+ MY KC L
Sbjct: 212 DGFEPDEMSLVSVLGACGELGDL-ELGRWVEGFVVERGMTLNSYIGSALISMYAKCGDLG 270
Query: 272 DAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
A R+F+ + +++ +WNA++ GY +NG+ EA + MK + + + + AC
Sbjct: 271 SARRIFDGMA-ARDVITWNAVISGYAQNGMADEAISLFHAMKEDCVTENKITLTAVLSAC 329
Query: 332 SSISA 336
++I A
Sbjct: 330 ATIGA 334
>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 741
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 92/287 (32%), Positives = 144/287 (50%), Gaps = 17/287 (5%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ + S G ++ A++LFDE+P++D SW MI GY + +Y+E + LF +MMK
Sbjct: 206 LIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTN---- 261
Query: 112 LLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
V P +V V+ AC + ++ELG+QVH + G N+ + +LI+ Y K LE
Sbjct: 262 --VRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELET 319
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC-- 228
A +F +L + + W I + + F+EM R N T S+L AC
Sbjct: 320 ACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAH 379
Query: 229 -GGVDDDGNCGRQMHANIVK--IGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
G +D GR +H I K G+ + ++ L+DMY KC + A +VF I+ K+
Sbjct: 380 LGAID----IGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSIL-HKS 434
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
++SWNAM+ G+ +G + M+ GIQ + L ACS
Sbjct: 435 LSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACS 481
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 73/294 (24%), Positives = 125/294 (42%), Gaps = 44/294 (14%)
Query: 80 WAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQV 139
W M G+ +D + L+ M+ + L+ ++ VLK+C + + G+Q+
Sbjct: 102 WNTMFRGHALSSDPVSALKLYVCMIS-----LGLLPNSYTFPFVLKSCAKSKAFKEGQQI 156
Query: 140 HGLLFKLGSSRNISLTGSLINFYGKFRCLEDA---------------------------- 171
HG + KLG ++ + SLI+ Y + LEDA
Sbjct: 157 HGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYI 216
Query: 172 ---DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+F ++ + V W A I G++ + FK+M + ++ + T +V+ AC
Sbjct: 217 ENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSAC 276
Query: 229 ---GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
G ++ GRQ+H I G S+ + L+D+Y KC L A +FE + K+
Sbjct: 277 AQSGSIE----LGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERL-PYKD 331
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKI 339
+ SWN ++ GY LY EA M SG + + + AC+ + A I
Sbjct: 332 VISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDI 385
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 91/185 (49%), Gaps = 7/185 (3%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L +N L+ ++ CG+L+TA LF+ +P +D SW +I GY + Y+E + LF EM++
Sbjct: 301 LKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLR 360
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKL--GSSRNISLTGSLINFYG 163
+ + ++ +L AC +++G+ +H + K G + SL SLI+ Y
Sbjct: 361 SGETPNDVT-----MLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYA 415
Query: 164 KFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSS 223
K +E A VF+ + + W A I G F+ F M + I+ + TF
Sbjct: 416 KCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVG 475
Query: 224 VLKAC 228
+L AC
Sbjct: 476 LLSAC 480
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 91/227 (40%), Gaps = 34/227 (14%)
Query: 139 VHGLLFKLGSSRNISLTGSLINF---YGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCR 195
+H + K+G LI F F L A VF ++ N ++W +
Sbjct: 52 IHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQEPNLLIWNTMFRGHAL 111
Query: 196 EGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEY 255
+ M + NSYTF VLK+C G+Q+H +++K+G + D Y
Sbjct: 112 SSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKE-GQQIHGHVLKLGCDLDLY 170
Query: 256 VQCGLVDMYGKCRLLRDAERVFE------------LI------------------VDKKN 285
V L+ MY + L DA +VF+ LI + K+
Sbjct: 171 VHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKD 230
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+ SWNAM+ GY G Y EA + M + ++ ES + + AC+
Sbjct: 231 VVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACA 277
>gi|255540507|ref|XP_002511318.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550433|gb|EEF51920.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 441
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 89/306 (29%), Positives = 147/306 (48%), Gaps = 8/306 (2%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
+ C +K C+ + ++ I K + LN L+ M+ +CG+++ AR +FD M
Sbjct: 129 FPCTLKACSRLRGRKEGKQIHAQIVK-YGFGSNCIVLNTLIHMYANCGEIEIARNMFDGM 187
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN 132
RD +W M GYV Y++ + LF EM + G F ++ VL AC +
Sbjct: 188 SERDIFAWNSMFSGYVKSGYYEDTVRLFEEMRELGVG-----FNDITLISVLAACGRLAD 242
Query: 133 MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192
+ELG+ + + G RN++L +L++ Y K ++ A +F Q+ + V W+A I
Sbjct: 243 VELGEWIAKYVRVNGLDRNMNLVTALVDMYAKCGEVDKARRLFDQMDGRDVVAWSAMISG 302
Query: 193 NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLES 252
+ + + F EM + N T SVL C + G G+ +H I + G+
Sbjct: 303 YSQARRCQEAVDLFNEMQMANLDPNEVTMVSVLSCCAALGALGT-GKWIHLYIKRKGMNL 361
Query: 253 DEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLM 312
+ LVD YGKC L+ A VF+L+ KN+ SW A++ G NG A ++ LM
Sbjct: 362 TVTLGTALVDFYGKCGLVDSAIEVFQLM-PVKNVYSWTALIQGLANNGQGKRALEYYQLM 420
Query: 313 KASGIQ 318
+ S ++
Sbjct: 421 RESNVE 426
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 78/336 (23%), Positives = 146/336 (43%), Gaps = 14/336 (4%)
Query: 7 PITT------DMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCG 60
PI+T + + ++++C KD L R+ ++ T L ++ +
Sbjct: 16 PISTVTQFPDNPKSLILQQCKTIKDLKQVHAHLLKTRRHLDSTVTENLLESAAII-LPAT 74
Query: 61 QLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWII 120
++ A +FD + D +++ +MI + Q+ + F +M++ FP
Sbjct: 75 TMEYALSIFDNIDGPDSSAYNIMIRAFTLKRSPQKALAFFKQMLEEAVAFDEFTFP---- 130
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
C LKAC + GKQ+H + K G N + +LI+ Y +E A +F +
Sbjct: 131 -CTLKACSRLRGRKEGKQIHAQIVKYGFGSNCIVLNTLIHMYANCGEIEIARNMFDGMSE 189
Query: 181 HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQ 240
+ W + + G++ F+EM + N T SVL ACG + D G
Sbjct: 190 RDIFAWNSMFSGYVKSGYYEDTVRLFEEMRELGVGFNDITLISVLAACGRL-ADVELGEW 248
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
+ + GL+ + + LVDMY KC + A R+F+ + D +++ +W+AM+ GY +
Sbjct: 249 IAKYVRVNGLDRNMNLVTALVDMYAKCGEVDKARRLFDQM-DGRDVVAWSAMISGYSQAR 307
Query: 301 LYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
EA M+ + + E + + C+++ A
Sbjct: 308 RCQEAVDLFNEMQMANLDPNEVTMVSVLSCCAALGA 343
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 81/167 (48%), Gaps = 7/167 (4%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ CG++D AR+LFD+M RD +W+ MI GY QE + LF EM M
Sbjct: 268 LVDMYAKCGEVDKARRLFDQMDGRDVVAWSAMISGYSQARRCQEAVDLFNEM------QM 321
Query: 112 LLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
+ P + +V VL C + GK +H + + G + ++L +L++FYGK ++
Sbjct: 322 ANLDPNEVTMVSVLSCCAALGALGTGKWIHLYIKRKGMNLTVTLGTALVDFYGKCGLVDS 381
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKN 217
A VF + N WTA I G + ++ M ++ N
Sbjct: 382 AIEVFQLMPVKNVYSWTALIQGLANNGQGKRALEYYQLMRESNVEPN 428
>gi|255561624|ref|XP_002521822.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539035|gb|EEF40632.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 793
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 95/341 (27%), Positives = 162/341 (47%), Gaps = 15/341 (4%)
Query: 5 CLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDT 64
CL + Y ++ C KD A ++++ + + + N L+ M+ C ++D
Sbjct: 105 CLKLDKFSYAGVLSACGQIKDFALG-KVIHGLAIVCGLGQQVFLTNLLIDMYCKCERIDH 163
Query: 65 ARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVL 124
AR LF+ D SW +I GY V Y+E + L +M H L A+ + L
Sbjct: 164 ARLLFESSDELDNVSWNSLITGYARVGAYEEMLKLLVKMH-----HTGLRLNAFTLGSAL 218
Query: 125 KACVCTMN--MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
K+C +N + GK +HG K G +I + +L++ Y K L DA +F N
Sbjct: 219 KSCYLNLNNMVSYGKTLHGYTVKQGLDLDIVVGTALLDMYAKTGYLGDAIQLFRTSPNQN 278
Query: 183 TVVWTAKIVNNCREGHF-----HQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC 237
V++ A I + ++ F +M R+ IK + +TFSS++K C ++
Sbjct: 279 VVMYNAMIAGFIQTEDIDKECAYEALKLFSQMQRQGIKPSDFTFSSIIKICNHIEA-FEY 337
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYI 297
G+Q+HA+I K ++SDE++ L+++Y D + F K +I SW M+ GY
Sbjct: 338 GKQIHAHICKHNIQSDEFIGSTLIELYSLLGSTEDQLKCFN-STPKLDIVSWTTMIAGYA 396
Query: 298 RNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASK 338
+NG + A Y + ASG + E +I + AC+ ++A +
Sbjct: 397 QNGQFESALALFYELLASGKKPDEFIITTMLSACADVAAER 437
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 80/283 (28%), Positives = 132/283 (46%), Gaps = 12/283 (4%)
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI 119
G++ A++LFD M R S+ ++I GY + Y + I LF+E L +
Sbjct: 58 GEMGNAQKLFDRMSERSVISYNILISGYGGMGFYHKAIGLFSEARM-----ACLKLDKFS 112
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
VL AC + LGK +HGL G + + LT LI+ Y K ++ A +F
Sbjct: 113 YAGVLSACGQIKDFALGKVIHGLAIVCGLGQQVFLTNLLIDMYCKCERIDHARLLFESSD 172
Query: 180 RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG-GVDDDGNCG 238
+ V W + I R G + ++ +M ++ N++T S LK+C +++ + G
Sbjct: 173 ELDNVSWNSLITGYARVGAYEEMLKLLVKMHHTGLRLNAFTLGSALKSCYLNLNNMVSYG 232
Query: 239 RQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIR 298
+ +H VK GL+ D V L+DMY K L DA ++F +N+ +NAM+ G+I+
Sbjct: 233 KTLHGYTVKQGLDLDIVVGTALLDMYAKTGYLGDAIQLFR-TSPNQNVVMYNAMIAGFIQ 291
Query: 299 N-----GLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
EA K M+ GI+ + + + C+ I A
Sbjct: 292 TEDIDKECAYEALKLFSQMQRQGIKPSDFTFSSIIKICNHIEA 334
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 75/286 (26%), Positives = 121/286 (42%), Gaps = 12/286 (4%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQ-----ECITLFAEMMKR 106
LL M+ G L A QLF P ++ + MI G++ D E + LF++M ++
Sbjct: 254 LLDMYAKTGYLGDAIQLFRTSPNQNVVMYNAMIAGFIQTEDIDKECAYEALKLFSQMQRQ 313
Query: 107 KKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166
F + ++K C E GKQ+H + K + + +LI Y
Sbjct: 314 GIKPSDFTFSS-----IIKICNHIEAFEYGKQIHAHICKHNIQSDEFIGSTLIELYSLLG 368
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
ED F+ + + V WT I + G F F E+ K + + +++L
Sbjct: 369 STEDQLKCFNSTPKLDIVSWTTMIAGYAQNGQFESALALFYELLASGKKPDEFIITTMLS 428
Query: 227 ACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
AC V + G Q+H VK G+ + VQ + MY K L A+ FE I + ++
Sbjct: 429 ACADVAAE-RSGEQVHGYAVKTGIGTLAIVQNSQISMYAKSGNLDSAKITFEEIKN-PDV 486
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
SW+ M+ ++G +A LMK+ GI + + ACS
Sbjct: 487 VSWSVMICSNAQHGHAKDAINLFELMKSYGIHPNQITFLGVLTACS 532
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 89/348 (25%), Positives = 138/348 (39%), Gaps = 56/348 (16%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRV---NIKPTLLFLNRLLLMHVSCGQLDTARQLF 69
++ +IK C + AFE I + NI+ + L+ ++ G + + F
Sbjct: 322 FSSIIKICNHIE----AFEYGKQIHAHICKHNIQSDEFIGSTLIELYSLLGSTEDQLKCF 377
Query: 70 DEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVC 129
+ P D SW MI GY ++ + LF E++ K +II +L AC
Sbjct: 378 NSTPKLDIVSWTTMIAGYAQNGQFESALALFYELLASGKKP-----DEFIITTMLSACAD 432
Query: 130 TMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAK 189
G+QVHG K G + S I+ Y K L+ A F ++K + V W+
Sbjct: 433 VAAERSGEQVHGYAVKTGIGTLAIVQNSQISMYAKSGNLDSAKITFEEIKNPDVVSWSVM 492
Query: 190 IVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--GGVDDDG------------ 235
I +N + GH N F+ M I N TF VL AC GG+ ++G
Sbjct: 493 ICSNAQHGHAKDAINLFELMKSYGIHPNQITFLGVLTACSHGGLVEEGLRYYESMKKDYD 552
Query: 236 ----------------NCGRQMHAN--IVKIGLESDEYVQCGLVDMYGKCRLLRD----- 272
GR + A I+ G + L+ CR+ +D
Sbjct: 553 MKINVKHCTCIVDLLSRAGRLLDAKNFILNSGFGDHPVMWRTLLS---GCRIYKDIVTGK 609
Query: 273 --AERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
AE++ EL D + +S+ + Y G+ + ATK LMK GI+
Sbjct: 610 HVAEKLIEL--DPQESSSYVLLYNIYTDAGIDLPATKIRELMKDRGIR 655
>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
Length = 1097
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 95/338 (28%), Positives = 171/338 (50%), Gaps = 24/338 (7%)
Query: 6 LPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTA 65
+ I + Y +++ C Q+D A ++ I K ++ L N+LL +++ CG+L A
Sbjct: 114 IAIDSFSYVNILQRCLKQEDILLAKQVHVCIIKS-GMEQNLYVANKLLRVYIRCGRLQCA 172
Query: 66 RQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWII-VCVL 124
RQ+FD++ ++ W MI GY + ++ + ++ + M+++ G P I + +L
Sbjct: 173 RQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVY-DKMRQECGQ-----PNEITYLSIL 226
Query: 125 KACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTV 184
KAC C +N++ GK++H + + G ++ + +L+N Y K +EDA +F ++ N +
Sbjct: 227 KACCCPVNLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMVERNVI 286
Query: 185 VWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCG-----R 239
WT I G + F+ F +M RE NSYT+ S+L A + + G +
Sbjct: 287 SWTVMIGGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNA------NASAGALEWVK 340
Query: 240 QMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRN 299
++H++ V GL D V LV MY K + DA VF+ + + ++I SW M+ G ++
Sbjct: 341 EVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMTE-RDIFSWTVMIGGLAQH 399
Query: 300 GLYVEATKFLYLMKASG----IQIQESLINDLRIACSS 333
G EA M+ +G + S++N IA +S
Sbjct: 400 GRGQEAFSLFLQMQRNGCLPNLTTYLSILNASAIASTS 437
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 89/311 (28%), Positives = 147/311 (47%), Gaps = 13/311 (4%)
Query: 26 SAGAFELLNHIRKRVNIKPTLLFLNRL----LLMHVSCGQLDTARQLFDEMPLRDFNSWA 81
S A E +N + K ++ L+ R+ + M++ CG +D AR LFD++ +R +W
Sbjct: 536 STDALEWVNEVHKHA-VETGLISDFRVGSAFIHMYIRCGSIDDARLLFDKLSVRHVTTWN 594
Query: 82 VMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHG 141
MI G +E ++LF +M + + A + +L A V +E K+VH
Sbjct: 595 AMIGGAAQQRCGREALSLFLQMQREG-----FIPDATTFINILSANVDEEALEWVKEVHS 649
Query: 142 LLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQ 201
G ++ + +L++ Y K ++ A VF + N WT I + G H
Sbjct: 650 HATDAGLV-DLRVGNALVHTYSKCGNVKYAKQVFDDMVERNVTTWTMMIGGLAQHGCGHD 708
Query: 202 VFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLV 261
F+ F +M RE I ++ T+ S+L AC +++H + V GL SD V LV
Sbjct: 709 AFSHFLQMLREGIVPDATTYVSILSACASTGAL-EWVKEVHNHAVSAGLVSDLRVGNALV 767
Query: 262 DMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQE 321
MY KC + DA VF+ +V+ +++ SW M+ G ++G +EA F MK+ G +
Sbjct: 768 HMYAKCGSIDDARSVFDDMVE-RDVFSWTVMIGGLAQHGRGLEALDFFVKMKSEGFKPNG 826
Query: 322 SLINDLRIACS 332
+ ACS
Sbjct: 827 YSYVAVLTACS 837
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 75/267 (28%), Positives = 124/267 (46%), Gaps = 7/267 (2%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+V CG ++ A+ +FD+M R+ SW VMI G QE LF +M +
Sbjct: 260 LVNMYVKCGSIEDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHLFLQMQREG---- 315
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+ ++ V +L A +E K+VH G + ++ + +L++ Y K ++DA
Sbjct: 316 -FIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDA 374
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
VF + + WT I + G + F+ F +M R N T+ S+L A
Sbjct: 375 RVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNGCLPNLTTYLSILNASAIA 434
Query: 232 DDDG-NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWN 290
+ +H + + G SD + L+ MY KC + DA VF+ + D+ ++ SWN
Sbjct: 435 STSALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCGSIDDARLVFDGMCDR-DVISWN 493
Query: 291 AMLVGYIRNGLYVEATKFLYLMKASGI 317
AM+ G +NG EA M+ G+
Sbjct: 494 AMMGGLAQNGCGHEAFTVFLQMQQEGL 520
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 81/294 (27%), Positives = 133/294 (45%), Gaps = 8/294 (2%)
Query: 26 SAGAFELLNHIRKRV---NIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAV 82
SAGA E + + + L N L+ M+ G +D AR +FD M RD SW V
Sbjct: 332 SAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMTERDIFSWTV 391
Query: 83 MIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGL 142
MI G QE +LF +M ++ L ++ + A T +E K VH
Sbjct: 392 MIGGLAQHGRGQEAFSLFLQM---QRNGCLPNLTTYLSILNASAIASTSALEWVKVVHKH 448
Query: 143 LFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQV 202
+ G ++ + +LI+ Y K ++DA VF + + + W A + + G H+
Sbjct: 449 AEEAGFISDLRIGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMMGGLAQNGCGHEA 508
Query: 203 FNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVD 262
F F +M +E + +S T+ S+L G D ++H + V+ GL SD V +
Sbjct: 509 FTVFLQMQQEGLVPDSTTYLSLLNTHGSTDAL-EWVNEVHKHAVETGLISDFRVGSAFIH 567
Query: 263 MYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASG 316
MY +C + DA +F+ + +++ +WNAM+ G + EA M+ G
Sbjct: 568 MYIRCGSIDDARLLFDKL-SVRHVTTWNAMIGGAAQQRCGREALSLFLQMQREG 620
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 117/247 (47%), Gaps = 11/247 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ + CG + A+Q+FD+M R+ +W +MI G + + F +M++
Sbjct: 663 NALVHTYSKCGNVKYAKQVFDDMVERNVTTWTMMIGGLAQHGCGHDAFSHFLQMLREG-- 720
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+V A V +L AC T +E K+VH G ++ + +L++ Y K ++
Sbjct: 721 ---IVPDATTYVSILSACASTGALEWVKEVHNHAVSAGLVSDLRVGNALVHMYAKCGSID 777
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC- 228
DA VF + + WT I + G + + F +M E K N Y++ +VL AC
Sbjct: 778 DARSVFDDMVERDVFSWTVMIGGLAQHGRGLEALDFFVKMKSEGFKPNGYSYVAVLTACS 837
Query: 229 -GGVDDDGNCGRQMHANIVKIGLESD-EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
G+ D+G RQ + G+E E+ C +VD+ G+ LL +AE + + +
Sbjct: 838 HAGLVDEGR--RQFLSMTQDYGIEPTMEHYTC-MVDLLGRAGLLEEAELFILNMPIEPDD 894
Query: 287 ASWNAML 293
A W A+L
Sbjct: 895 APWGALL 901
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 82/335 (24%), Positives = 146/335 (43%), Gaps = 10/335 (2%)
Query: 3 NLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQL 62
N CLP T + L + ++++ + L N L+ M+ CG +
Sbjct: 415 NGCLPNLTTYLSILNASAIASTSALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCGSI 474
Query: 63 DTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVC 122
D AR +FD M RD SW M+ G E T+F +M + LV + +
Sbjct: 475 DDARLVFDGMCDRDVISWNAMMGGLAQNGCGHEAFTVFLQMQQEG-----LVPDSTTYLS 529
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
+L T +E +VH + G + + + I+ Y + ++DA +F +L +
Sbjct: 530 LLNTHGSTDALEWVNEVHKHAVETGLISDFRVGSAFIHMYIRCGSIDDARLLFDKLSVRH 589
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDG-NCGRQM 241
W A I ++ + + F +M RE ++ TF ++L A VD++ +++
Sbjct: 590 VTTWNAMIGGAAQQRCGREALSLFLQMQREGFIPDATTFINILSA--NVDEEALEWVKEV 647
Query: 242 HANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGL 301
H++ GL D V LV Y KC ++ A++VF+ +V++ N+ +W M+ G ++G
Sbjct: 648 HSHATDAGL-VDLRVGNALVHTYSKCGNVKYAKQVFDDMVER-NVTTWTMMIGGLAQHGC 705
Query: 302 YVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+A M GI + + AC+S A
Sbjct: 706 GHDAFSHFLQMLREGIVPDATTYVSILSACASTGA 740
>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
Length = 666
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 90/287 (31%), Positives = 144/287 (50%), Gaps = 17/287 (5%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ + S G ++ A+++FDE+P++D SW MI GY + +Y+E + LF +MMK
Sbjct: 163 LIKGYASRGYIENAQKMFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTN---- 218
Query: 112 LLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
V P +V V+ AC + ++ELG+QVH + G N+ + +LI+ Y K LE
Sbjct: 219 --VRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGELET 276
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC-- 228
A +F L + + W I + + F+EM R N T S+L AC
Sbjct: 277 ACGLFEGLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAH 336
Query: 229 -GGVDDDGNCGRQMHANIVK--IGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
G +D GR +H I K G+ + ++ L+DMY KC + A +VF I+ K+
Sbjct: 337 LGAID----IGRWIHVYIDKRLKGVANASSLRTSLIDMYAKCGDIEAAHQVFNSIL-HKS 391
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
++SWNAM+ G+ +G + M+ +GI+ + L ACS
Sbjct: 392 LSSWNAMIFGFAMHGRADASFDIFSRMRKNGIEPDDITFVGLLSACS 438
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 69/275 (25%), Positives = 129/275 (46%), Gaps = 16/275 (5%)
Query: 27 AGAFELLNHIRKRVN---IKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVM 83
+G+ EL + ++ L +N L+ ++ CG+L+TA LF+ +P +D SW +
Sbjct: 236 SGSIELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFEGLPYKDVISWNTL 295
Query: 84 IVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLL 143
I GY + Y+E + LF EM++ + + ++ +L AC +++G+ +H +
Sbjct: 296 IGGYTHMNLYKEALLLFQEMLRSGETPNDVT-----MLSILPACAHLGAIDIGRWIHVYI 350
Query: 144 FKL--GSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQ 201
K G + SL SLI+ Y K +E A VF+ + + W A I G
Sbjct: 351 DKRLKGVANASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADA 410
Query: 202 VFNDFKEMGRERIKKNSYTFSSVLKAC--GGVDDDGNCGRQMHANIVKIGLESDEYVQCG 259
F+ F M + I+ + TF +L AC G+ D GR + ++ + + + G
Sbjct: 411 SFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLD---LGRHIFRSMTQDYKMTPKLEHYG 467
Query: 260 -LVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
++D+ G L ++AE + + + + W ++L
Sbjct: 468 CMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLL 502
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 75/312 (24%), Positives = 133/312 (42%), Gaps = 44/312 (14%)
Query: 62 LDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIV 121
L A +F+ + + W M G+ +D + L+ M+ + L+ ++
Sbjct: 41 LPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMIS-----LGLLPNSYTFP 95
Query: 122 CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA---------- 171
+LK+C + + G+Q+HG + KLG ++ + SLI+ Y + LEDA
Sbjct: 96 FLLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDESPHR 155
Query: 172 ---------------------DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMG 210
+F ++ + V W A I G++ + FK+M
Sbjct: 156 DVVSYTALIKGYASRGYIENAQKMFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMM 215
Query: 211 RERIKKNSYTFSSVLKAC---GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKC 267
+ ++ + T +V+ AC G ++ GRQ+H+ I G S+ + L+D+Y KC
Sbjct: 216 KTNVRPDESTMVTVVSACAQSGSIE----LGRQVHSWIDDHGFGSNLKIVNALIDLYSKC 271
Query: 268 RLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDL 327
L A +FE + K++ SWN ++ GY LY EA M SG + + +
Sbjct: 272 GELETACGLFEGL-PYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSI 330
Query: 328 RIACSSISASKI 339
AC+ + A I
Sbjct: 331 LPACAHLGAIDI 342
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 91/229 (39%), Gaps = 34/229 (14%)
Query: 137 KQVHGLLFKLGSSRNISLTGSLINF---YGKFRCLEDADFVFSQLKRHNTVVWTAKIVNN 193
+ +H + K G LI F F L A VF ++ N ++W +
Sbjct: 7 RMIHAQMIKTGLHNTNYALSKLIEFCILSPHFDGLPYAISVFETIQEPNLLIWNTMFRGH 66
Query: 194 CREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESD 253
+ M + NSYTF +LK+C G+Q+H +++K+G + D
Sbjct: 67 ALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAK-SKAFKEGQQIHGHVLKLGCDLD 125
Query: 254 EYVQCGLVDMYGKCRLLRDAERVFE------------LI------------------VDK 283
YV L+ MY + L DA +VF+ LI +
Sbjct: 126 LYVHTSLISMYVQNGRLEDAHKVFDESPHRDVVSYTALIKGYASRGYIENAQKMFDEIPV 185
Query: 284 KNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
K++ SWNAM+ GY G Y EA + M + ++ ES + + AC+
Sbjct: 186 KDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACA 234
>gi|255547019|ref|XP_002514567.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223546171|gb|EEF47673.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 515
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 88/319 (27%), Positives = 152/319 (47%), Gaps = 39/319 (12%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N +L + G L +++F MP RD SW ++ GY + + + MM+
Sbjct: 78 NTILSAYSKSGHLPKMKEIFSLMPNRDGVSWNTILSGYASYGSVSDAVKAYNSMMRDGVF 137
Query: 110 HM-LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLG--------------------- 147
++ + F +I+ + V +LG+Q+HG + K G
Sbjct: 138 NLNRITFSTMLILASSRELV-----DLGRQIHGHIMKFGFGGYVFVGSPLVDMYAKTGLV 192
Query: 148 ----------SSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREG 197
RN+ + ++I KF +ED+ +F +K + + WT I + G
Sbjct: 193 YEAKKVFDEMPDRNVVMHNTMITGLLKFGMMEDSKRLFHGMKERDNISWTTMITGLVQNG 252
Query: 198 HFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQ 257
+ + F++M + I + YTF SVL ACGG+ G+Q+HA I++ + +V
Sbjct: 253 LEEEAIDFFRQMRLDGIGMDQYTFGSVLTACGGLTALRE-GKQVHAFIIRSDCTDNVFVG 311
Query: 258 CGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGI 317
LVDMY KC++LR AE VF+ + KN+ SW A+LVGY +NG EA K M+ +GI
Sbjct: 312 SALVDMYCKCKILRYAEAVFKRM-KYKNVVSWTAILVGYGQNGFSEEAVKVFCDMQRNGI 370
Query: 318 QIQESLINDLRIACSSISA 336
+ + + + +C+++++
Sbjct: 371 EPDDFTLGSVISSCANLAS 389
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/273 (29%), Positives = 129/273 (47%), Gaps = 7/273 (2%)
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI 119
G ++ +++LF M RD SW MI G V +E I F +M G F +
Sbjct: 221 GMMEDSKRLFHGMKERDNISWTTMITGLVQNGLEEEAIDFFRQMRLDGIGMDQYTFGS-- 278
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
VL AC + GKQVH + + + N+ + +L++ Y K + L A+ VF ++K
Sbjct: 279 ---VLTACGGLTALREGKQVHAFIIRSDCTDNVFVGSALVDMYCKCKILRYAEAVFKRMK 335
Query: 180 RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGR 239
N V WTA +V + G + F +M R I+ + +T SV+ +C + G
Sbjct: 336 YKNVVSWTAILVGYGQNGFSEEAVKVFCDMQRNGIEPDDFTLGSVISSCANLASLEE-GA 394
Query: 240 QMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRN 299
Q H + GL S V LV +YGKC + D++R+F + + ++ SW A++ GY +
Sbjct: 395 QFHCRALVSGLISSITVSNALVTLYGKCGSIEDSDRLFNEM-NFRDEVSWTALISGYAQF 453
Query: 300 GLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
G E + M A G++ + +ACS
Sbjct: 454 GKARETIELFERMLAHGLKPDAVTFIGVLLACS 486
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/275 (24%), Positives = 111/275 (40%), Gaps = 61/275 (22%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
+LK C T N K++H + K ++ L +L+N YGK + A +F + + N
Sbjct: 14 LLKFCCETRNQSQAKKLHCHIIKTLANPEPFLYNNLMNAYGKLGNIAYARHLFDGMPQRN 73
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEM-GRERIKKN-------SY-TFSSVLKACGGVDD 233
+ W + + GH ++ F M R+ + N SY + S +KA +
Sbjct: 74 SFSWNTILSAYSKSGHLPKMKEIFSLMPNRDGVSWNTILSGYASYGSVSDAVKAYNSMMR 133
Query: 234 DG----------------------NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLR 271
DG + GRQ+H +I+K G +V LVDMY K L+
Sbjct: 134 DGVFNLNRITFSTMLILASSRELVDLGRQIHGHIMKFGFGGYVFVGSPLVDMYAKTGLVY 193
Query: 272 DAERVFELIVDK------------------------------KNIASWNAMLVGYIRNGL 301
+A++VF+ + D+ ++ SW M+ G ++NGL
Sbjct: 194 EAKKVFDEMPDRNVVMHNTMITGLLKFGMMEDSKRLFHGMKERDNISWTTMITGLVQNGL 253
Query: 302 YVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
EA F M+ GI + + + AC ++A
Sbjct: 254 EEEAIDFFRQMRLDGIGMDQYTFGSVLTACGGLTA 288
>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
Length = 1020
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 80/283 (28%), Positives = 155/283 (54%), Gaps = 9/283 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ CG RQ+F+++ RD +W MI G + +++E ++ +M +++G M
Sbjct: 386 LVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQM--QREGMM 443
Query: 112 LLVFPAWII-VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
P I V +L ACV + G+++H + K G +IS+ +LI+ Y + ++D
Sbjct: 444 ----PNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDISVQNALISMYARCGSIKD 499
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
A +F+++ R + + WTA I + G + F++M + +K N T++S+L AC
Sbjct: 500 ARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSS 559
Query: 231 VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWN 290
+ GR++H +++ GL +D +V LV+MY C ++DA +VF+ + +++I ++N
Sbjct: 560 -PAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVKDARQVFDRMT-QRDIVAYN 617
Query: 291 AMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSS 333
AM+ GY + L EA K ++ G++ + ++ AC++
Sbjct: 618 AMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACAN 660
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 87/301 (28%), Positives = 146/301 (48%), Gaps = 15/301 (4%)
Query: 42 IKPTLLF----LNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECI 97
+K LLF N +L M+ CG + AR++FD+M + SW ++I GY D +
Sbjct: 271 MKARLLFDVNVANCILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIGGYADCGHSEIAF 330
Query: 98 TLFAEMMKRKKGHMLLVFPAWII-VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTG 156
+F +M + V P I + VL A ++ GK VH + G ++++
Sbjct: 331 EIFQKMQQEG------VVPNRITYINVLNAFSGPAALKWGKTVHSHILNAGHESDLAVGT 384
Query: 157 SLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKK 216
+L+ Y K +D VF +L + + W I G++ + + +M RE +
Sbjct: 385 ALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMP 444
Query: 217 NSYTFSSVLKACGGVDDDG-NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAER 275
N T+ +L AC V+ + GR++H+ +VK G D VQ L+ MY +C ++DA
Sbjct: 445 NKITYVILLNAC--VNPTALHWGREIHSRVVKDGFMFDISVQNALISMYARCGSIKDARL 502
Query: 276 VFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
+F +V +K+I SW AM+ G ++GL EA M+ +G++ + ACSS +
Sbjct: 503 LFNKMV-RKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPA 561
Query: 336 A 336
A
Sbjct: 562 A 562
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 89/307 (28%), Positives = 153/307 (49%), Gaps = 10/307 (3%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
Y ++K C KD E+ HI + + +N L+ M++ CG ++ ARQ+++++
Sbjct: 144 YMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYT-VNALINMYIQCGSIEEARQVWNKL 202
Query: 73 --PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCT 130
R +SW M+VGYV +E + L EM + H L + A + +L +C
Sbjct: 203 NHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQ----HGLALGRA-TTMRLLSSCKSP 257
Query: 131 MNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKI 190
+E G+++H K ++++ ++N Y K + +A VF +++ + V WT I
Sbjct: 258 SALECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFDKMETKSVVSWTIII 317
Query: 191 VNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGL 250
GH F F++M +E + N T+ +VL A G G+ +H++I+ G
Sbjct: 318 GGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSG-PAALKWGKTVHSHILNAGH 376
Query: 251 ESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLY 310
ESD V LV MY KC +D +VFE +V++ IA WN M+ G G + EA++ +
Sbjct: 377 ESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIA-WNTMIGGLAEGGNWEEASEIYH 435
Query: 311 LMKASGI 317
M+ G+
Sbjct: 436 QMQREGM 442
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 82/326 (25%), Positives = 147/326 (45%), Gaps = 20/326 (6%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLF----LNRLLLMHVSCGQLDTARQL 68
Y L+ C + A I RV +K +F N L+ M+ CG + AR L
Sbjct: 449 YVILLNACV----NPTALHWGREIHSRV-VKDGFMFDISVQNALISMYARCGSIKDARLL 503
Query: 69 FDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACV 128
F++M +D SW MI G E + +F +M + + + + +L AC
Sbjct: 504 FNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTS-----ILNACS 558
Query: 129 CTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTA 188
++ G+++H + + G + + + +L+N Y ++DA VF ++ + + V + A
Sbjct: 559 SPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVKDARQVFDRMTQRDIVAYNA 618
Query: 189 KIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC--GRQMHANIV 246
I + F + E +K + T+ ++L AC + G+ +++H+ ++
Sbjct: 619 MIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACA---NSGSLEWAKEIHSLVL 675
Query: 247 KIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEAT 306
K G SD + LV Y KC DA VF+ ++ K+N+ SWNA++ G ++G +
Sbjct: 676 KDGYLSDTSLGNALVSTYAKCGSFSDALLVFDKMM-KRNVISWNAIIGGCAQHGRGQDVL 734
Query: 307 KFLYLMKASGIQIQESLINDLRIACS 332
+ MK GI+ L ACS
Sbjct: 735 QLFERMKMEGIKPDIVTFVSLLSACS 760
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 77/289 (26%), Positives = 130/289 (44%), Gaps = 22/289 (7%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRV---NIKPTLLFLNRLLLMHVSCGQLDTARQLF 69
YT ++ C+ S A + I ++V + N L+ M+ CG + ARQ+F
Sbjct: 550 YTSILNACS----SPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVKDARQVF 605
Query: 70 DEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVC 129
D M RD ++ MI GY +E + LF + + + + + +L AC
Sbjct: 606 DRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTY-----INMLNACAN 660
Query: 130 TMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAK 189
+ ++E K++H L+ K G + SL +L++ Y K DA VF ++ + N + W A
Sbjct: 661 SGSLEWAKEIHSLVLKDGYLSDTSLGNALVSTYAKCGSFSDALLVFDKMMKRNVISWNAI 720
Query: 190 IVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--GGVDDDGN---CGRQMHAN 244
I + G V F+ M E IK + TF S+L AC G+ ++G C
Sbjct: 721 IGGCAQHGRGQDVLQLFERMKMEGIKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSRDFG 780
Query: 245 IVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
I + E+ C +VD+ G+ L + E + + + + N W A+L
Sbjct: 781 ITP----TIEHYGC-MVDLLGRAGQLDEVEALIKTMPFQANTRIWGALL 824
>gi|357468471|ref|XP_003604520.1| Coatomer subunit beta'-2 [Medicago truncatula]
gi|355505575|gb|AES86717.1| Coatomer subunit beta'-2 [Medicago truncatula]
Length = 1033
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 82/274 (29%), Positives = 131/274 (47%), Gaps = 9/274 (3%)
Query: 45 TLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMM 104
T +N L M+ C + D +LF +M D SW +I+ YV + D + + F M
Sbjct: 286 TAYVVNTLGTMYSKCRKPDYVMRLFGKMSTPDVVSWTNLIMTYVQMGDEERALDAFKRMR 345
Query: 105 KRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYG 163
K V P + V+ AC + G+Q+HG +LG +S++ S+I Y
Sbjct: 346 KSD------VSPNEYTFASVISACANLAITKWGEQIHGHALRLGLVDALSVSNSIITLYS 399
Query: 164 KFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSS 223
K L++A VF + R + + W+ I C+ H + FN M RE K N + +S
Sbjct: 400 KCGLLQEASLVFDGMTRKDIISWSTIISVYCQGSHAKEAFNYLSWMSREGPKPNEFALAS 459
Query: 224 VLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
VL CG + G+Q+HA + IGL+ + V L+ MY + L++A ++F+ I
Sbjct: 460 VLSVCGSMALL-EPGKQVHAYALCIGLDHETMVHSALISMYSRSGNLQEASKIFDSI-KN 517
Query: 284 KNIASWNAMLVGYIRNGLYVEATKFLYLMKASGI 317
+I SW AM+ GY +G EA + + G+
Sbjct: 518 NDIVSWTAMINGYAEHGYSQEAISLFENISSVGL 551
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 85/297 (28%), Positives = 139/297 (46%), Gaps = 10/297 (3%)
Query: 44 PTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEM 103
P + LN L + G++ AR +F++M RD SW +I GYV+ A+ E + LF+ M
Sbjct: 82 PNMPELNSQLKQLMKLGKICEARDMFNKMSHRDEISWTNLIAGYVNAANSNEALILFSNM 141
Query: 104 MKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYG 163
L +++ LKAC MN+ G+ +HG K G ++ ++ +L++ Y
Sbjct: 142 WVDSG----LQKDQFVVSVALKACALGMNVYFGELLHGFSVKSGLINSVFVSSALVDMYM 197
Query: 164 KFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSS 223
K E VF + N V WTA IV G + F EM R ++ +S+TF+
Sbjct: 198 KVGKTEQGCSVFENMTTRNVVSWTAVIVGLVHAGCSLDGLSYFSEMWRSKVGYDSHTFAV 257
Query: 224 VLKACGGVDDDG--NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIV 281
LKA + G + G+ +HA +K G YV L MY KCR R+F +
Sbjct: 258 ALKASA---ESGLLHYGKAIHAQTIKQGFNETAYVVNTLGTMYSKCRKPDYVMRLFGKM- 313
Query: 282 DKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASK 338
++ SW +++ Y++ G A M+ S + E + AC++++ +K
Sbjct: 314 STPDVVSWTNLIMTYVQMGDEERALDAFKRMRKSDVSPNEYTFASVISACANLAITK 370
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/305 (25%), Positives = 142/305 (46%), Gaps = 7/305 (2%)
Query: 31 ELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDV 90
ELL+ + + ++ + L+ M++ G+ + +F+ M R+ SW +IVG V
Sbjct: 171 ELLHGFSVKSGLINSVFVSSALVDMYMKVGKTEQGCSVFENMTTRNVVSWTAVIVGLVHA 230
Query: 91 ADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSR 150
+ ++ F+EM + K G+ F LKA + + GK +H K G +
Sbjct: 231 GCSLDGLSYFSEMWRSKVGYDSHTF-----AVALKASAESGLLHYGKAIHAQTIKQGFNE 285
Query: 151 NISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMG 210
+ +L Y K R + +F ++ + V WT I+ + G + + FK M
Sbjct: 286 TAYVVNTLGTMYSKCRKPDYVMRLFGKMSTPDVVSWTNLIMTYVQMGDEERALDAFKRMR 345
Query: 211 RERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLL 270
+ + N YTF+SV+ AC + G Q+H + +++GL V ++ +Y KC LL
Sbjct: 346 KSDVSPNEYTFASVISACANLAIT-KWGEQIHGHALRLGLVDALSVSNSIITLYSKCGLL 404
Query: 271 RDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIA 330
++A VF+ + +K+I SW+ ++ Y + EA +L M G + E + +
Sbjct: 405 QEASLVFDGMT-RKDIISWSTIISVYCQGSHAKEAFNYLSWMSREGPKPNEFALASVLSV 463
Query: 331 CSSIS 335
C S++
Sbjct: 464 CGSMA 468
>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 811
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 81/282 (28%), Positives = 144/282 (51%), Gaps = 7/282 (2%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL ++ G++ A++LF+EMP D W++MI Y +E + LF M +
Sbjct: 278 LLELYAKSGEIIDAQRLFEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTS---- 333
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+V + VL+AC +++++LGKQ+H + K G + N+ ++ ++++ Y K +E++
Sbjct: 334 -VVPNNFTFASVLQACASSVSLDLGKQIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIENS 392
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
+F +L N V W IV + G + N F M ++ T+SSVL+A +
Sbjct: 393 MKLFEELPDRNDVTWNTIIVGYVQLGDGERAMNLFTHMLEHDMQPTEVTYSSVLRASASL 452
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
G Q+H+ +K D V L+DMY KC + DA F+ + +K++ SWNA
Sbjct: 453 -AALEPGLQIHSLTIKTMYNKDTVVANSLIDMYAKCGRINDARLTFDKM-NKRDEVSWNA 510
Query: 292 MLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSS 333
M+ GY +G+ +EA +M+ + + + + ACS+
Sbjct: 511 MICGYSMHGMSMEALNLFDMMQHTDCKPNKLTFVGVLSACSN 552
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 75/277 (27%), Positives = 142/277 (51%), Gaps = 7/277 (2%)
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI 119
G +D AR +FD++ +D SW M+ Y + Y+E + LF +M R G+ F
Sbjct: 185 GNVDVARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQM--RIMGYKPNNF---T 239
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
I LK+C+ +GK VHG K ++ + +L+ Y K + DA +F ++
Sbjct: 240 ISGALKSCLGLEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQRLFEEMP 299
Query: 180 RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGR 239
+ + + W+ I + + + F M + + N++TF+SVL+AC + G+
Sbjct: 300 KTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACAS-SVSLDLGK 358
Query: 240 QMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRN 299
Q+H+ ++K GL S+ +V ++D+Y KC + ++ ++FE + D+ ++ +WN ++VGY++
Sbjct: 359 QIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELPDRNDV-TWNTIIVGYVQL 417
Query: 300 GLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
G A M +Q E + + A +S++A
Sbjct: 418 GDGERAMNLFTHMLEHDMQPTEVTYSSVLRASASLAA 454
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/251 (25%), Positives = 115/251 (45%), Gaps = 19/251 (7%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N ++ ++ CG+++ + +LF+E+P R+ +W +IVGYV + D + + LF M++
Sbjct: 377 NAIMDVYAKCGEIENSMKLFEELPDRNDVTWNTIIVGYVQLGDGERAMNLFTHMLEHDMQ 436
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ + + VL+A +E G Q+H L K +++ + SLI+ Y K +
Sbjct: 437 PTEVTYSS-----VLRASASLAALEPGLQIHSLTIKTMYNKDTVVANSLIDMYAKCGRIN 491
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
DA F ++ + + V W A I G + N F M K N TF VL AC
Sbjct: 492 DARLTFDKMNKRDEVSWNAMICGYSMHGMSMEALNLFDMMQHTDCKPNKLTFVGVLSAC- 550
Query: 230 GVDDDGNCG--RQMHANIVKIGLESD-----EYVQCGLVDMYGKCRLLRDAERVFELIVD 282
N G + A+ + + D E+ C +V + G+ +A ++ I
Sbjct: 551 -----SNAGLLYKGQAHFESMSKDYDIKPCIEHYTC-MVWLLGRLGRFDEAMKLIGEIAY 604
Query: 283 KKNIASWNAML 293
+ ++ W A+L
Sbjct: 605 QPSVMVWRALL 615
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 82/312 (26%), Positives = 137/312 (43%), Gaps = 14/312 (4%)
Query: 25 DSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMI 84
D L HI KR L N LL +V L A +LFDEMP + S+ +
Sbjct: 50 DPIAGKHLHCHILKR-GTSLDLFAQNILLNFYVQSNSLQDASKLFDEMPQTNTISFVTLA 108
Query: 85 VGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLF 144
GY + + + + K+GH + F + +LK V L +H ++
Sbjct: 109 QGYSRDHQFHQALHFILRIF--KEGHEVNPF---VFTTLLKLLVSMDLAHLCWTLHACVY 163
Query: 145 KLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKI---VNNCREGHFHQ 201
KLG + + +LI+ Y ++ A VF + + V WT + NC Q
Sbjct: 164 KLGHHADAFVGTALIDAYSVRGNVDVARHVFDDICCKDMVSWTGMVACYAENCFYEESLQ 223
Query: 202 VFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLV 261
+FN + MG K N++T S LK+C G+ + N G+ +H +K + D +V L+
Sbjct: 224 LFNQMRIMG---YKPNNFTISGALKSCLGL-EAFNVGKSVHGCALKGCYDHDLFVGIALL 279
Query: 262 DMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQE 321
++Y K + DA+R+FE + K ++ W+ M+ Y ++ EA M+ + +
Sbjct: 280 ELYAKSGEIIDAQRLFEEM-PKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNN 338
Query: 322 SLINDLRIACSS 333
+ AC+S
Sbjct: 339 FTFASVLQACAS 350
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 95/201 (47%), Gaps = 2/201 (0%)
Query: 136 GKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCR 195
GK +H + K G+S ++ L+NFY + L+DA +F ++ + NT+ + R
Sbjct: 54 GKHLHCHILKRGTSLDLFAQNILLNFYVQSNSLQDASKLFDEMPQTNTISFVTLAQGYSR 113
Query: 196 EGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEY 255
+ FHQ + + +E + N + F+++LK +D C +HA + K+G +D +
Sbjct: 114 DHQFHQALHFILRIFKEGHEVNPFVFTTLLKLLVSMDLAHLCW-TLHACVYKLGHHADAF 172
Query: 256 VQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKAS 315
V L+D Y + A VF+ I K++ SW M+ Y N Y E+ + M+
Sbjct: 173 VGTALIDAYSVRGNVDVARHVFDDIC-CKDMVSWTGMVACYAENCFYEESLQLFNQMRIM 231
Query: 316 GIQIQESLINDLRIACSSISA 336
G + I+ +C + A
Sbjct: 232 GYKPNNFTISGALKSCLGLEA 252
>gi|297740109|emb|CBI30291.3| unnamed protein product [Vitis vinifera]
Length = 616
Score = 134 bits (337), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 96/334 (28%), Positives = 159/334 (47%), Gaps = 16/334 (4%)
Query: 4 LCLPITTDM-YTCLIKECTFQKDSAGAFEL---LNHIRKRVNIKPTLLFLNRLLLMHVSC 59
+C + T ++ I+ C S G+ E+ ++ + + I L + L M+ C
Sbjct: 34 ICGEVPTQFAFSSAIRACA----SLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKC 89
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI 119
G + A ++F+EMP +D SW MI GY + +++E + F +M+ + + +
Sbjct: 90 GAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEE-----VTIDQHV 144
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFS-QL 178
+ L AC + G+ VH + KLG +I + +L + Y K +E A VF
Sbjct: 145 LCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDS 204
Query: 179 KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCG 238
+ N V +T I + + F E+ R+ I+ N +TFSS++KAC G
Sbjct: 205 ECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACAN-QAALEQG 263
Query: 239 RQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIR 298
Q+HA ++KI + D +V LVDMYGKC LL A + F+ I D IA WN+++ + +
Sbjct: 264 TQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDEIGDPTEIA-WNSLVSVFGQ 322
Query: 299 NGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+GL +A K M G++ L CS
Sbjct: 323 HGLGKDAIKIFERMVDRGVKPNAITFISLLTGCS 356
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 78/267 (29%), Positives = 126/267 (47%), Gaps = 10/267 (3%)
Query: 72 MPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTM 131
MP R+ SW MI G + + E I F M R G + F ++AC
Sbjct: 1 MPQRNLVSWTAMISGLSQNSKFSEAIRTFCGM--RICGEVPTQFA---FSSAIRACASLG 55
Query: 132 NMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIV 191
++E+GKQ+H L K G + + +L + Y K + DA VF ++ + V WTA I
Sbjct: 56 SIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMID 115
Query: 192 NNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC--GRQMHANIVKIG 249
+ G F + FK+M E + + + S L ACG + C GR +H+++VK+G
Sbjct: 116 GYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALK---ACKFGRSVHSSVVKLG 172
Query: 250 LESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFL 309
ESD +V L DMY K + A VF + + +N+ S+ ++ GY+ +
Sbjct: 173 FESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVF 232
Query: 310 YLMKASGIQIQESLINDLRIACSSISA 336
++ GI+ E + L AC++ +A
Sbjct: 233 VELRRQGIEPNEFTFSSLIKACANQAA 259
>gi|115465982|ref|NP_001056590.1| Os06g0112000 [Oryza sativa Japonica Group]
gi|7363286|dbj|BAA93030.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113594630|dbj|BAF18504.1| Os06g0112000 [Oryza sativa Japonica Group]
gi|215737111|dbj|BAG96040.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 734
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 90/306 (29%), Positives = 147/306 (48%), Gaps = 13/306 (4%)
Query: 27 AGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVG 86
A AF + + + + VN+ +L + CG + AR +FD MP ++ SW MI G
Sbjct: 183 AHAFAIRSGLEELVNVATAILD------AYCKCGDIRAARVVFDWMPTKNSVSWNAMIDG 236
Query: 87 YVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKL 146
Y D +E + LF M++ + ++ L+AC ++ G +VH LL ++
Sbjct: 237 YAQNGDSREALALFNRMVEEG-----VDVTDVSVLAALQACGELGCLDEGMRVHELLVRI 291
Query: 147 GSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDF 206
G N+S+ +LI Y K + ++ A VF +L R V W A I+ + G F
Sbjct: 292 GLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLF 351
Query: 207 KEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGK 266
M E +K +S+T SV+ A + D R +H +++ L+ D YV L+DMY K
Sbjct: 352 TRMQLENVKPDSFTLVSVIPALADISDPLQ-ARWIHGYSIRLHLDQDVYVLTALIDMYAK 410
Query: 267 CRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLIND 326
C + A +F ++++ +WNAM+ GY +G A + MK+ GI E+
Sbjct: 411 CGRVNIARILFN-SARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLS 469
Query: 327 LRIACS 332
+ ACS
Sbjct: 470 VLSACS 475
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 82/321 (25%), Positives = 144/321 (44%), Gaps = 13/321 (4%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCG 60
M + P +T L+K C + D A + + R I L L M+ C
Sbjct: 50 MSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAAR-GIDSEALAATALANMYAKCR 108
Query: 61 QLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI- 119
+ AR++FD MP+RD +W ++ GY + + + M + + P I
Sbjct: 109 RPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGER-----PDSIT 163
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
+V VL AC + ++ H + G +++ ++++ Y K + A VF +
Sbjct: 164 LVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMP 223
Query: 180 RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG--GVDDDGNC 237
N+V W A I + G + F M E + + + L+ACG G D+
Sbjct: 224 TKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDE--- 280
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYI 297
G ++H +V+IGL+S+ V L+ MY KC+ + A VF+ + D++ SWNAM++G
Sbjct: 281 GMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDEL-DRRTQVSWNAMILGCA 339
Query: 298 RNGLYVEATKFLYLMKASGIQ 318
+NG +A + M+ ++
Sbjct: 340 QNGCSEDAVRLFTRMQLENVK 360
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 95/232 (40%), Gaps = 8/232 (3%)
Query: 91 ADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSR 150
+D + F M +L F +LK C ++ G+ VH L G
Sbjct: 38 SDLPAALAAFVAMSSAGAPPVLRTF-----TSLLKLCAARGDLATGRAVHAQLAARGIDS 92
Query: 151 NISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMG 210
+L N Y K R DA VF ++ + V W A + R G M
Sbjct: 93 EALAATALANMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQ 152
Query: 211 RERIKK-NSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRL 269
E ++ +S T SVL AC C R+ HA ++ GLE V ++D Y KC
Sbjct: 153 EEEGERPDSITLVSVLPACANARALAAC-REAHAFAIRSGLEELVNVATAILDAYCKCGD 211
Query: 270 LRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQE 321
+R A VF+ + KN SWNAM+ GY +NG EA M G+ + +
Sbjct: 212 IRAARVVFDWM-PTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTD 262
>gi|359473818|ref|XP_002263197.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g13230, mitochondrial-like [Vitis vinifera]
Length = 611
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 88/289 (30%), Positives = 146/289 (50%), Gaps = 10/289 (3%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L N LL M+V L A +LFDEMP R+ S+ +I GY + + E I LF + +
Sbjct: 73 LFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHR 132
Query: 106 RKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
V P + VL+AC + LG Q+H + K+G ++ ++ +L++ Y K
Sbjct: 133 E-------VLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAK 185
Query: 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
+E++ +F++ N V W IV + + G + F M R++ T+SS
Sbjct: 186 CGRMENSMELFAESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSA 245
Query: 225 LKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
L+AC + G Q+H+ VK + D V L+DMY KC ++DA VF+L+ +K+
Sbjct: 246 LRACASL-AALEPGLQIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFDLM-NKQ 303
Query: 285 NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSS 333
+ SWNAM+ GY +GL EA + M+ + ++ + + AC++
Sbjct: 304 DEVSWNAMISGYSMHGLGREALRIFDKMQETEVKPDKLTFVGVLSACAN 352
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 124/258 (48%), Gaps = 11/258 (4%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
++ + + N L+ ++ CG+++ + +LF E P R+ +W +IVG+V + D ++ +
Sbjct: 166 KIGLHSDVFVSNALMDVYAKCGRMENSMELFAESPHRNDVTWNTVIVGHVQLGDGEKALR 225
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
LF M++ + + + + L+AC +E G Q+H L K ++I +T +L
Sbjct: 226 LFLNMLEYRVQATEVTYSS-----ALRACASLAALEPGLQIHSLTVKTTFDKDIVVTNAL 280
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
I+ Y K ++DA VF + + + V W A I G + F +M +K +
Sbjct: 281 IDMYAKCGSIKDARLVFDLMNKQDEVSWNAMISGYSMHGLGREALRIFDKMQETEVKPDK 340
Query: 219 YTFSSVLKAC--GGVDDDGNCGRQMHANIVKIGLES-DEYVQCGLVDMYGKCRLLRDAER 275
TF VL AC G+ D G + I G+E E+ C +V + G+ L A +
Sbjct: 341 LTFVGVLSACANAGLLDQGQA--YFTSMIQDHGIEPCIEHYTC-MVWLLGRGGHLDKAVK 397
Query: 276 VFELIVDKKNIASWNAML 293
+ + I + ++ W A+L
Sbjct: 398 LIDEIPFQPSVMVWRALL 415
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 106/214 (49%), Gaps = 3/214 (1%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
L+ C+ GK +H + K G ++ L+N Y K L DA +F ++ N
Sbjct: 44 ALQDCIQKDEPSRGKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASKLFDEMPERN 103
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
T+ + I F + F + RE + N +TF+SVL+AC + + N G Q+H
Sbjct: 104 TISFVTLIQGYAESVRFLEAIELFVRLHRE-VLPNQFTFASVLQACATM-EGLNLGNQIH 161
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
+++KIGL SD +V L+D+Y KC + ++ +F +N +WN ++VG+++ G
Sbjct: 162 CHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELFAE-SPHRNDVTWNTVIVGHVQLGDG 220
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+A + M +Q E + AC+S++A
Sbjct: 221 EKALRLFLNMLEYRVQATEVTYSSALRACASLAA 254
>gi|356528388|ref|XP_003532785.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
mitochondrial-like [Glycine max]
Length = 721
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 91/284 (32%), Positives = 144/284 (50%), Gaps = 8/284 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N ++ + S G++D A QLF +MP RD SW+ MI G ++ + LF +M+
Sbjct: 185 NAMIHGYCSNGRVDDALQLFCQMPSRDVISWSSMIAGLDHNGKSEQALVLFRDMVASG-- 242
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSR-NISLTGSLINFYGKFRCL 168
+ + ++VC L A +G Q+H +FKLG + ++ SL+ FY + +
Sbjct: 243 ---VCLSSGVLVCGLSAAAKIPAWRVGIQIHCSVFKLGDWHFDEFVSASLVTFYAGCKQM 299
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
E A VF ++ + V+WTA + + F EM R + N +F+S L +C
Sbjct: 300 EAACRVFGEVVYKSVVIWTALLTGYGLNDKHREALEVFGEMMRIDVVPNESSFTSALNSC 359
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
G++D G+ +HA VK+GLES YV LV MY KC + DA VF+ I ++KN+ S
Sbjct: 360 CGLEDIER-GKVIHAAAVKMGLESGGYVGGSLVVMYSKCGYVSDAVYVFKGI-NEKNVVS 417
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
WN+++VG ++G + A M G+ + L ACS
Sbjct: 418 WNSVIVGCAQHGCGMWALALFNQMLREGVDPDGITVTGLLSACS 461
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/244 (25%), Positives = 107/244 (43%), Gaps = 9/244 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ + C Q++ A ++F E+ + W ++ GY ++E + +F EMM+ +
Sbjct: 289 LVTFYAGCKQMEAACRVFGEVVYKSVVIWTALLTGYGLNDKHREALEVFGEMMR-----I 343
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+V L +C ++E GK +H K+G + GSL+ Y K + DA
Sbjct: 344 DVVPNESSFTSALNSCCGLEDIERGKVIHAAAVKMGLESGGYVGGSLVVMYSKCGYVSDA 403
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG-- 229
+VF + N V W + IV + G F +M RE + + T + +L AC
Sbjct: 404 VYVFKGINEKNVVSWNSVIVGCAQHGCGMWALALFNQMLREGVDPDGITVTGLLSACSHS 463
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
G+ C + + L + Y +VD+ G+C L +AE V + K N W
Sbjct: 464 GMLQKARCFFRYFGQKRSVTLTIEHYTS--MVDVLGRCGELEEAEAVVMSMPMKANSMVW 521
Query: 290 NAML 293
A+L
Sbjct: 522 LALL 525
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 68/275 (24%), Positives = 111/275 (40%), Gaps = 46/275 (16%)
Query: 59 CGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAW 118
CG + TAR+LFDEMP R SW ++ G + + QE TLF M
Sbjct: 130 CGDIVTARKLFDEMPRRTVVSWTTLVDGLLRLGIVQEAETLFWAMEPM------------ 177
Query: 119 IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL 178
R+++ ++I+ Y ++DA +F Q+
Sbjct: 178 ------------------------------DRDVAAWNAMIHGYCSNGRVDDALQLFCQM 207
Query: 179 KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCG 238
+ + W++ I G Q F++M + +S L A + G
Sbjct: 208 PSRDVISWSSMIAGLDHNGKSEQALVLFRDMVASGVCLSSGVLVCGLSAAAKIPA-WRVG 266
Query: 239 RQMHANIVKIG-LESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYI 297
Q+H ++ K+G DE+V LV Y C+ + A RVF +V K++ W A+L GY
Sbjct: 267 IQIHCSVFKLGDWHFDEFVSASLVTFYAGCKQMEAACRVFGEVV-YKSVVIWTALLTGYG 325
Query: 298 RNGLYVEATK-FLYLMKASGIQIQESLINDLRIAC 331
N + EA + F +M+ + + S + L C
Sbjct: 326 LNDKHREALEVFGEMMRIDVVPNESSFTSALNSCC 360
>gi|9279602|dbj|BAB01060.1| unnamed protein product [Arabidopsis thaliana]
Length = 598
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 88/290 (30%), Positives = 146/290 (50%), Gaps = 13/290 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
NR+L ++ G L A LFDEMP RD SW MI GY ++ LF MKR
Sbjct: 39 NRILDSYIKFGFLGYANMLFDEMPKRDSVSWNTMISGYTSCGKLEDAWCLFT-CMKRSGS 97
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ + +LK +LG+QVHGL+ K G N+ + SL++ Y K +E
Sbjct: 98 DV----DGYSFSRLLKGIASVKRFDLGEQVHGLVIKGGYECNVYVGSSLVDMYAKCERVE 153
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFN--DFKEMGRERIKKNSYTFSSVLKA 227
DA F ++ N+V W A I + F EM + + ++ TF+ +L
Sbjct: 154 DAFEAFKEISEPNSVSWNALIAGFVQVRDIKTAFWLLGLMEM-KAAVTMDAGTFAPLLTL 212
Query: 228 CGGVDDDGNCG--RQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
+DD C +Q+HA ++K+GL+ + + ++ Y C + DA+RVF+ + K+
Sbjct: 213 ---LDDPMFCNLLKQVHAKVLKLGLQHEITICNAMISSYADCGSVSDAKRVFDGLGGSKD 269
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
+ SWN+M+ G+ + GL +A KF +++S I++ + + L +CS ++
Sbjct: 270 LISWNSMIAGFAQKGLSEDAVKFFSYLRSSEIKVDDYAFSALLRSCSDLA 319
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/284 (26%), Positives = 131/284 (46%), Gaps = 6/284 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+ L+ M+ C +++ A + F E+ + SW +I G+V V D + L +M+ K
Sbjct: 140 SSLVDMYAKCERVEDAFEAFKEISEPNSVSWNALIAGFVQVRDIKTAFWLLG-LMEMKAA 198
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ A +L M L KQVH + KLG I++ ++I+ Y +
Sbjct: 199 ---VTMDAGTFAPLLTLLDDPMFCNLLKQVHAKVLKLGLQHEITICNAMISSYADCGSVS 255
Query: 170 DADFVFSQLK-RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
DA VF L + + W + I ++G F + IK + Y FS++L++C
Sbjct: 256 DAKRVFDGLGGSKDLISWNSMIAGFAQKGLSEDAVKFFSYLRSSEIKVDDYAFSALLRSC 315
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
+ G+Q+HA K G S+E+V L+ MY KC ++ A + F+ I K + +
Sbjct: 316 SDLAT-LQLGQQIHALATKSGFVSNEFVISSLIVMYSKCGIIESARKCFQQISSKHSTVA 374
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
WNAM++GY ++GL + M +++ + ACS
Sbjct: 375 WNAMILGYAQHGLGQVSLDLFSQMCNQNVKLDHVTFTAILTACS 418
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 116/254 (45%), Gaps = 14/254 (5%)
Query: 32 LLNHIRKRV---NIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM-PLRDFNSWAVMIVGY 87
LL + +V ++ + N ++ + CG + A+++FD + +D SW MI G+
Sbjct: 221 LLKQVHAKVLKLGLQHEITICNAMISSYADCGSVSDAKRVFDGLGGSKDLISWNSMIAGF 280
Query: 88 VDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLG 147
++ + F+ + + + + +L++C ++LG+Q+H L K G
Sbjct: 281 AQKGLSEDAVKFFSYLRSSE-----IKVDDYAFSALLRSCSDLATLQLGQQIHALATKSG 335
Query: 148 SSRNISLTGSLINFYGKFRCLEDADFVFSQL-KRHNTVVWTAKIVNNCREGHFHQVFNDF 206
N + SLI Y K +E A F Q+ +H+TV W A I+ + G + F
Sbjct: 336 FVSNEFVISSLIVMYSKCGIIESARKCFQQISSKHSTVAWNAMILGYAQHGLGQVSLDLF 395
Query: 207 KEMGRERIKKNSYTFSSVLKACG--GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMY 264
+M + +K + TF+++L AC G+ +G + + KI + Y VD+
Sbjct: 396 SQMCNQNVKLDHVTFTAILTACSHTGLIQEGLELLNLMEPVYKIQPRMEHYAAA--VDLL 453
Query: 265 GKCRLLRDAERVFE 278
G+ L+ A+ + E
Sbjct: 454 GRAGLVNKAKELIE 467
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 79/160 (49%), Gaps = 2/160 (1%)
Query: 139 VHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGH 198
H K GS +I ++ +++ Y KF L A+ +F ++ + ++V W I G
Sbjct: 22 THCYAIKCGSISDIYVSNRILDSYIKFGFLGYANMLFDEMPKRDSVSWNTMISGYTSCGK 81
Query: 199 FHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQC 258
+ F M R + Y+FS +LK V + G Q+H ++K G E + YV
Sbjct: 82 LEDAWCLFTCMKRSGSDVDGYSFSRLLKGIASV-KRFDLGEQVHGLVIKGGYECNVYVGS 140
Query: 259 GLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIR 298
LVDMY KC + DA F+ I + N SWNA++ G+++
Sbjct: 141 SLVDMYAKCERVEDAFEAFKEI-SEPNSVSWNALIAGFVQ 179
>gi|414591609|tpg|DAA42180.1| TPA: hypothetical protein ZEAMMB73_073969 [Zea mays]
Length = 696
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 88/251 (35%), Positives = 133/251 (52%), Gaps = 13/251 (5%)
Query: 53 LLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHML 112
L M+ G L AR+LFDEMP R+ +W ++ V D + T+ A R G M
Sbjct: 163 LDMYFKTGCLALARRLFDEMPNRNVVAWNAVMTN--AVLDGRPLETVEAYFGLRGAGGM- 219
Query: 113 LVFPAWIIVCVL-KACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
P + VC AC N+ LG+Q +G + K G +++S++ S+++FYGK RC+ A
Sbjct: 220 ---PNVVSVCAFFNACAGMTNLSLGEQFYGFVAKCGFGKDVSVSNSVVDFYGKCRCVGKA 276
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTF--SSVLKACG 229
VF + N V W + +V + G + F F +G R + F SSVL C
Sbjct: 277 RAVFDGMGVRNNVSWCSMVVAYAQNGAEEEAF--FVYLGARRAGEEPTDFMVSSVLTTCA 334
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
G+ + GR +HA V+ ++S+ +V LVDMYGKC + DAE+VF + ++N+ +W
Sbjct: 335 GLLGL-DLGRALHAVAVRSCIDSNIFVASALVDMYGKCGGIEDAEQVF-FEMPQRNLVTW 392
Query: 290 NAMLVGYIRNG 300
NAM+ GY G
Sbjct: 393 NAMIGGYAHIG 403
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/251 (26%), Positives = 117/251 (46%), Gaps = 14/251 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N ++ + C + AR +FD M +R+ SW M+V Y +E F + R+ G
Sbjct: 261 NSVVDFYGKCRCVGKARAVFDGMGVRNNVSWCSMVVAYAQNGAEEE--AFFVYLGARRAG 318
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
F ++ VL C + ++LG+ +H + + NI + +L++ YGK +E
Sbjct: 319 EEPTDF---MVSSVLTTCAGLLGLDLGRALHAVAVRSCIDSNIFVASALVDMYGKCGGIE 375
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKE--MGRERIKKNSYTFSSVLKA 227
DA+ VF ++ + N V W A I G H + F + MG+E N T +VL A
Sbjct: 376 DAEQVFFEMPQRNLVTWNAMIGGYAHIGDAHNALSVFDKMIMGQE-TAPNYITLVNVLTA 434
Query: 228 C--GGVDDDGNCGRQMHANIVKIGLESD-EYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
C GG+ +G + G+E E+ C +VD+ + + A ++ + + +
Sbjct: 435 CSRGGLTKEGY--ELFQTMKWRFGIEPRIEHYAC-VVDLLCRAGMEERAYKIIQGMPMRP 491
Query: 285 NIASWNAMLVG 295
+I+ W A+L G
Sbjct: 492 SISVWGALLGG 502
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/264 (23%), Positives = 112/264 (42%), Gaps = 9/264 (3%)
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN 132
P S+ I G A + ++ FA M++ FP+ A
Sbjct: 80 PSPTVVSYTAFISGAAQHARPLQALSAFAAMLRLGLRPNDFTFPS----AFKAAASAPPR 135
Query: 133 MELGKQVHGLLFKLGSSRNISLTG-SLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIV 191
G Q+H L + G + + + ++ Y K CL A +F ++ N V W A +
Sbjct: 136 SAAGTQLHALALRFGYLPDDAFVSCAALDMYFKTGCLALARRLFDEMPNRNVVAWNAVMT 195
Query: 192 NNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLE 251
N +G + + + N + + AC G+ + + G Q + + K G
Sbjct: 196 NAVLDGRPLETVEAYFGLRGAGGMPNVVSVCAFFNACAGMTNL-SLGEQFYGFVAKCGFG 254
Query: 252 SDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYL 311
D V +VD YGKCR + A VF+ + + N+ SW +M+V Y +NG EA F+YL
Sbjct: 255 KDVSVSNSVVDFYGKCRCVGKARAVFDGMGVRNNV-SWCSMVVAYAQNGAEEEAF-FVYL 312
Query: 312 -MKASGIQIQESLINDLRIACSSI 334
+ +G + + +++ + C+ +
Sbjct: 313 GARRAGEEPTDFMVSSVLTTCAGL 336
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 90/202 (44%), Gaps = 3/202 (1%)
Query: 117 AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNIS-LTGSLINFYGKFRCLEDADFVF 175
A ++ ++A + T + LG+ H +L S L L+N Y K A
Sbjct: 17 AQLLAGAVEAAIATRSARLGRAAHARALRLLSPALPPFLCAHLVNLYSKLDLPGAAAASL 76
Query: 176 SQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDG 235
+ V +TA I + Q + F M R ++ N +TF S KA
Sbjct: 77 AADPSPTVVSYTAFISGAAQHARPLQALSAFAAMLRLGLRPNDFTFPSAFKAAASAPPRS 136
Query: 236 NCGRQMHANIVKIG-LESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLV 294
G Q+HA ++ G L D +V C +DMY K L A R+F+ + + +N+ +WNA++
Sbjct: 137 AAGTQLHALALRFGYLPDDAFVSCAALDMYFKTGCLALARRLFDEMPN-RNVVAWNAVMT 195
Query: 295 GYIRNGLYVEATKFLYLMKASG 316
+ +G +E + + ++ +G
Sbjct: 196 NAVLDGRPLETVEAYFGLRGAG 217
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 6/96 (6%)
Query: 33 LNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVAD 92
L+ + R I + + L+ M+ CG ++ A Q+F EMP R+ +W MI GY + D
Sbjct: 345 LHAVAVRSCIDSNIFVASALVDMYGKCGGIEDAEQVFFEMPQRNLVTWNAMIGGYAHIGD 404
Query: 93 YQECITLFAEMMKRKKGHMLLVFPAWI-IVCVLKAC 127
+++F +M+ ++ P +I +V VL AC
Sbjct: 405 AHNALSVFDKMIMGQE-----TAPNYITLVNVLTAC 435
>gi|125595802|gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japonica Group]
Length = 734
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 90/306 (29%), Positives = 147/306 (48%), Gaps = 13/306 (4%)
Query: 27 AGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVG 86
A AF + + + + VN+ +L + CG + AR +FD MP ++ SW MI G
Sbjct: 183 AHAFAIRSGLEELVNVATAILD------AYCKCGDIRAARVVFDWMPTKNSVSWNAMIDG 236
Query: 87 YVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKL 146
Y D +E + LF M++ + ++ L+AC ++ G +VH LL ++
Sbjct: 237 YAQNGDSREALALFNRMVEEG-----VDVTDVSVLAALQACGELGCLDEGMRVHELLVRI 291
Query: 147 GSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDF 206
G N+S+ +LI Y K + ++ A VF +L R V W A I+ + G F
Sbjct: 292 GLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLF 351
Query: 207 KEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGK 266
M E +K +S+T SV+ A + D R +H +++ L+ D YV L+DMY K
Sbjct: 352 TRMQLENVKPDSFTLVSVIPALADISDPLQ-ARWIHGYSIRLHLDQDVYVLTALIDMYAK 410
Query: 267 CRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLIND 326
C + A +F ++++ +WNAM+ GY +G A + MK+ GI E+
Sbjct: 411 CGRVNIARILFN-SARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLS 469
Query: 327 LRIACS 332
+ ACS
Sbjct: 470 VLSACS 475
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 82/321 (25%), Positives = 144/321 (44%), Gaps = 13/321 (4%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCG 60
M + P +T L+K C + D A + + R I L L M+ C
Sbjct: 50 MSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAAR-GIDSEALAATALANMYAKCR 108
Query: 61 QLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI- 119
+ AR++FD MP+RD +W ++ GY + + + M + + P I
Sbjct: 109 RPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGER-----PDSIT 163
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
+V VL AC + ++ H + G +++ ++++ Y K + A VF +
Sbjct: 164 LVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMP 223
Query: 180 RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG--GVDDDGNC 237
N+V W A I + G + F M E + + + L+ACG G D+
Sbjct: 224 TKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDE--- 280
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYI 297
G ++H +V+IGL+S+ V L+ MY KC+ + A VF+ + D++ SWNAM++G
Sbjct: 281 GMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDEL-DRRTQVSWNAMILGCA 339
Query: 298 RNGLYVEATKFLYLMKASGIQ 318
+NG +A + M+ ++
Sbjct: 340 QNGCSEDAVRLFTRMQLENVK 360
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 95/232 (40%), Gaps = 8/232 (3%)
Query: 91 ADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSR 150
+D + F M +L F +LK C ++ G+ VH L G
Sbjct: 38 SDLPAALAAFVAMSSAGAPPVLRTF-----TSLLKLCAARGDLATGRAVHAQLAARGIDS 92
Query: 151 NISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMG 210
+L N Y K R DA VF ++ + V W A + R G M
Sbjct: 93 EALAATALANMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQ 152
Query: 211 RERIKK-NSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRL 269
E ++ +S T SVL AC C R+ HA ++ GLE V ++D Y KC
Sbjct: 153 EEEGERPDSITLVSVLPACANARALAAC-REAHAFAIRSGLEELVNVATAILDAYCKCGD 211
Query: 270 LRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQE 321
+R A VF+ + KN SWNAM+ GY +NG EA M G+ + +
Sbjct: 212 IRAARVVFDWM-PTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTD 262
>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 703
Score = 134 bits (336), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 95/338 (28%), Positives = 162/338 (47%), Gaps = 10/338 (2%)
Query: 1 MDNLCLPITTD--MYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVS 58
M+ L + TD MY ++K C QKD A ++ + I K ++ +N LL +++
Sbjct: 17 MNRLQRGLITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKS-RMEQNAHVMNNLLHVYIE 75
Query: 59 CGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAW 118
CG+L AR +FD + + SW MI GYV+ ++ + LF EM H + A
Sbjct: 76 CGRLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMC-----HEGVQPNAG 130
Query: 119 IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL 178
+ +LKAC ++ GK+VH + G ++ + +L+ YGK + +A +F L
Sbjct: 131 TYMIILKACASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNL 190
Query: 179 KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCG 238
H+ + WT I + G+ + + +M +E K N+ T+ S+L AC +
Sbjct: 191 MNHDIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACAS-EGALKWV 249
Query: 239 RQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIR 298
+++H + + GLE D V LV MY K + DA VF+ + +++ SWN M+ +
Sbjct: 250 KRVHRHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRM-KVRDVVSWNVMIGAFAE 308
Query: 299 NGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+G EA M+ G + + + AC+S A
Sbjct: 309 HGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGA 346
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 80/281 (28%), Positives = 131/281 (46%), Gaps = 7/281 (2%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL M+ CG ++ AR++FD + D SW VMI Y + +E L +M +
Sbjct: 170 LLRMYGKCGSINEARRIFDNLMNHDIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPN 229
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+ + V +L AC ++ K+VH G ++ + +L+ Y K ++DA
Sbjct: 230 AITY-----VSILNACASEGALKWVKRVHRHALDAGLELDVRVGTALVQMYAKSGSIDDA 284
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
VF ++K + V W I G H+ ++ F +M E K ++ F S+L AC
Sbjct: 285 RVVFDRMKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACASA 344
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
+++H + + GLE D V LV MY K + DA VF+ + +N+ SWNA
Sbjct: 345 GAL-EWVKKIHRHALDSGLEVDVRVGTALVHMYSKSGSIDDARVVFDRM-KVRNVVSWNA 402
Query: 292 MLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
M+ G ++GL +A + M A G++ + ACS
Sbjct: 403 MISGLAQHGLGQDALEVFRRMTAHGVKPDRVTFVAVLSACS 443
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 116/247 (46%), Gaps = 15/247 (6%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ G +D AR +FD M +RD SW VMI + + E LF +M
Sbjct: 271 LVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQMQTEGCKPD 330
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
++F + +L AC +E K++H G ++ + +L++ Y K ++DA
Sbjct: 331 AIMF-----LSILNACASAGALEWVKKIHRHALDSGLEVDVRVGTALVHMYSKSGSIDDA 385
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--- 228
VF ++K N V W A I + G F+ M +K + TF +VL AC
Sbjct: 386 RVVFDRMKVRNVVSWNAMISGLAQHGLGQDALEVFRRMTAHGVKPDRVTFVAVLSACSHA 445
Query: 229 GGVDDDGNCGRQMHANIVKI-GLESD-EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
G VD+ GR + + ++ G+E D + C +VD+ G+ L +A+ + + +
Sbjct: 446 GLVDE----GRSQYLAMTQVYGIEPDVSHCNC-MVDLLGRAGRLMEAKLFIDNMAVDPDE 500
Query: 287 ASWNAML 293
A+W A+L
Sbjct: 501 ATWGALL 507
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 66/122 (54%), Gaps = 2/122 (1%)
Query: 217 NSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERV 276
+S+ + VLK C D +Q+H I+K +E + +V L+ +Y +C L++A V
Sbjct: 27 DSFMYVEVLKRCLK-QKDLMAAKQVHDCIIKSRMEQNAHVMNNLLHVYIECGRLQEARCV 85
Query: 277 FELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
F+ +V KK+ ASWNAM+ GY+ + +A + M G+Q + AC+S+SA
Sbjct: 86 FDALV-KKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMIILKACASLSA 144
Query: 337 SK 338
K
Sbjct: 145 LK 146
>gi|356498444|ref|XP_003518062.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Glycine max]
Length = 634
Score = 134 bits (336), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 86/300 (28%), Positives = 148/300 (49%), Gaps = 8/300 (2%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
Y ++ EC ++ + H+ K + P + RL++ +V C L AR +FD M
Sbjct: 61 YNTVLNECLRKRAIREGQRVHAHMIK-THYLPCVYLRTRLIVFYVKCDSLRDARHVFDVM 119
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN 132
P R+ SW MI Y + ++LF +M++ F VL +C+ +
Sbjct: 120 PERNVVSWTAMISAYSQRGYASQALSLFVQMLRSGTEPNEFTF-----ATVLTSCIGSSG 174
Query: 133 MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192
LG+Q+H + KL ++ + SL++ Y K + +A +F L + V TA I
Sbjct: 175 FVLGRQIHSHIIKLNYEAHVYVGSSLLDMYAKDGKIHEARGIFQCLPERDVVSCTAIISG 234
Query: 193 NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLES 252
+ G + F+ + RE ++ N T++SVL A G+ + G+Q+H ++++ + S
Sbjct: 235 YAQLGLDEEALELFRRLQREGMQSNYVTYTSVLTALSGLAALDH-GKQVHNHLLRSEVPS 293
Query: 253 DEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLM 312
+Q L+DMY KC L A R+F+ + ++ + SWNAMLVGY ++G E + LM
Sbjct: 294 YVVLQNSLIDMYSKCGNLTYARRIFDTL-HERTVISWNAMLVGYSKHGEGREVLELFNLM 352
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 107/214 (50%), Gaps = 2/214 (0%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
VL C+ + G++VH + K + L LI FY K L DA VF + N
Sbjct: 64 VLNECLRKRAIREGQRVHAHMIKTHYLPCVYLRTRLIVFYVKCDSLRDARHVFDVMPERN 123
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
V WTA I + G+ Q + F +M R + N +TF++VL +C G GRQ+H
Sbjct: 124 VVSWTAMISAYSQRGYASQALSLFVQMLRSGTEPNEFTFATVLTSCIG-SSGFVLGRQIH 182
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
++I+K+ E+ YV L+DMY K + +A +F+ + ++++ S A++ GY + GL
Sbjct: 183 SHIIKLNYEAHVYVGSSLLDMYAKDGKIHEARGIFQCL-PERDVVSCTAIISGYAQLGLD 241
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
EA + ++ G+Q + A S ++A
Sbjct: 242 EEALELFRRLQREGMQSNYVTYTSVLTALSGLAA 275
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 7/98 (7%)
Query: 31 ELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDV 90
++ NH+ R + ++ N L+ M+ CG L AR++FD + R SW M+VGY
Sbjct: 281 QVHNHLL-RSEVPSYVVLQNSLIDMYSKCGNLTYARRIFDTLHERTVISWNAMLVGYSKH 339
Query: 91 ADYQECITLFAEMMKRKKGHMLLVFPAWIIV-CVLKAC 127
+ +E + LF M+ K V P + V VL C
Sbjct: 340 GEGREVLELFNLMIDENK-----VKPDSVTVLAVLSGC 372
>gi|357117655|ref|XP_003560579.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Brachypodium distachyon]
Length = 614
Score = 134 bits (336), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 89/301 (29%), Positives = 151/301 (50%), Gaps = 10/301 (3%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
Y I C ++ ++ H+ K +P + RL++++V CG LD AR + D M
Sbjct: 44 YDAAITACVERQALGEGRQVHAHMVK-ARYRPPVYLATRLIILYVRCGALDDARNVLDGM 102
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRK-KGHMLLVFPAWIIVCVLKACVCTM 131
P R+ SW MI GY + E + LF M++ K + + + VL +C
Sbjct: 103 PERNVVSWTAMISGYSQSGRHAEALELFIRMLRAGCKAN------EFTLATVLTSCPVHQ 156
Query: 132 NMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIV 191
+++ +QVH L+ K ++ + SL++ YGK +++A VF L +TV TA I
Sbjct: 157 SIQQVEQVHSLVVKTNFESHMFVGSSLLDMYGKSGNIQEARKVFDMLPERDTVSCTAIIS 216
Query: 192 NNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLE 251
+ G + + F+++ ++ N TF+++L + G+ N G+Q+H I++ L
Sbjct: 217 GYAQLGLDDEALDLFRQLYSSGMQCNYVTFTTLLTSLSGLASL-NYGKQVHGLILRKELP 275
Query: 252 SDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYL 311
+Q L+DMY KC L + RVF+ + + I SWNAML+GY R+G+ E +
Sbjct: 276 FFIVLQNSLIDMYSKCGKLLYSRRVFDNMPQRSAI-SWNAMLMGYGRHGIGQEVVQLFRT 334
Query: 312 M 312
M
Sbjct: 335 M 335
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 95/197 (48%), Gaps = 2/197 (1%)
Query: 122 CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH 181
+ ACV + G+QVH + K + L LI Y + L+DA V +
Sbjct: 46 AAITACVERQALGEGRQVHAHMVKARYRPPVYLATRLIILYVRCGALDDARNVLDGMPER 105
Query: 182 NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQM 241
N V WTA I + G + F M R K N +T ++VL +C V Q+
Sbjct: 106 NVVSWTAMISGYSQSGRHAEALELFIRMLRAGCKANEFTLATVLTSCP-VHQSIQQVEQV 164
Query: 242 HANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGL 301
H+ +VK ES +V L+DMYGK +++A +VF+++ ++ + S A++ GY + GL
Sbjct: 165 HSLVVKTNFESHMFVGSSLLDMYGKSGNIQEARKVFDMLPERDTV-SCTAIISGYAQLGL 223
Query: 302 YVEATKFLYLMKASGIQ 318
EA + +SG+Q
Sbjct: 224 DDEALDLFRQLYSSGMQ 240
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/292 (25%), Positives = 130/292 (44%), Gaps = 24/292 (8%)
Query: 8 ITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQ 67
+ T + +C + + Q E ++ + + N + + + LL M+ G + AR+
Sbjct: 145 LATVLTSCPVHQSIQQ------VEQVHSLVVKTNFESHMFVGSSLLDMYGKSGNIQEARK 198
Query: 68 LFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKAC 127
+FD +P RD S +I GY + E + LF ++ + F +L +
Sbjct: 199 VFDMLPERDTVSCTAIISGYAQLGLDDEALDLFRQLYSSGMQCNYVTF-----TTLLTSL 253
Query: 128 VCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWT 187
++ GKQVHGL+ + I L SLI+ Y K L + VF + + + + W
Sbjct: 254 SGLASLNYGKQVHGLILRKELPFFIVLQNSLIDMYSKCGKLLYSRRVFDNMPQRSAISWN 313
Query: 188 AKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--GGVDDDGNCGRQMHANI 245
A ++ R G +V F+ M E +K +S T +VL C GG+ D+ G + I
Sbjct: 314 AMLMGYGRHGIGQEVVQLFRTM-TEEVKPDSVTLLAVLSGCSHGGLVDE---GLDIFDLI 369
Query: 246 VKIGLESDEYVQCG----LVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
VK E + + G ++D+ G+ L+ A + E + + A W ++L
Sbjct: 370 VK---EQNAVIHIGHYGCVIDLLGRSGQLQKALDLIEHMPFEPTPAIWGSLL 418
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYI 297
GRQ+HA++VK Y+ L+ +Y +C L DA V + + ++N+ SW AM+ GY
Sbjct: 60 GRQVHAHMVKARYRPPVYLATRLIILYVRCGALDDARNVLDGM-PERNVVSWTAMISGYS 118
Query: 298 RNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
++G + EA + M +G + E + + +C
Sbjct: 119 QSGRHAEALELFIRMLRAGCKANEFTLATVLTSCP 153
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 68/151 (45%), Gaps = 7/151 (4%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
++ N L+ M+ CG+L +R++FD MP R SW M++GY QE + LF M +
Sbjct: 278 IVLQNSLIDMYSKCGKLLYSRRVFDNMPQRSAISWNAMLMGYGRHGIGQEVVQLFRTMTE 337
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSR-NISLTGSLINFYGK 164
K + ++ VL C ++ G + L+ K ++ +I G +I+ G+
Sbjct: 338 EVKPDSV------TLLAVLSGCSHGGLVDEGLDIFDLIVKEQNAVIHIGHYGCVIDLLGR 391
Query: 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCR 195
L+ A + + T ++ CR
Sbjct: 392 SGQLQKALDLIEHMPFEPTPAIWGSLLGACR 422
>gi|297820962|ref|XP_002878364.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297324202|gb|EFH54623.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 767
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 82/280 (29%), Positives = 139/280 (49%), Gaps = 10/280 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N +++ + + +L A QLF P+++ SW +I GY E LF EM
Sbjct: 64 NTMIVAYSNSRRLADAEQLFRSNPVKNTISWNALISGYCKSGSKVEAFNLFWEMQSDG-- 121
Query: 110 HMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+ P + + VL+ C + + G+Q+HG K G ++++ L+ Y + + +
Sbjct: 122 ----IKPNEYTLGSVLRMCTSLLLLLRGEQIHGHTIKTGFDLDVNVVNGLLAMYAQCKRI 177
Query: 169 EDADFVFSQLK-RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
+A+++F + N V WT+ + + G + F+++ R+ + N YTF SVL A
Sbjct: 178 SEAEYLFDTMAGEKNNVTWTSMLTGYSQNGFAFKAIECFRDLRRDGNQSNQYTFPSVLTA 237
Query: 228 CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
C V G Q+H IVK G +++ YVQ L+DMY KCR L A + E + + ++
Sbjct: 238 CASV-SACRVGVQVHGCIVKSGFKTNIYVQSALIDMYAKCRDLESARALLEGM-EVDDVV 295
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDL 327
SWN+M+VG +R GL EA M ++I + I +
Sbjct: 296 SWNSMIVGCVRQGLIEEALSMFGRMHERDMKIDDFTIPSI 335
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 82/290 (28%), Positives = 125/290 (43%), Gaps = 25/290 (8%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMPLRDFN-SWAVMIVGYVDVADYQECITLFAEMMKRK 107
+N LL M+ C ++ A LFD M N +W M+ GY + I F ++ +
Sbjct: 164 VNGLLAMYAQCKRISEAEYLFDTMAGEKNNVTWTSMLTGYSQNGFAFKAIECFRDLRRDG 223
Query: 108 KGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
FP+ VL AC +G QVHG + K G NI + +LI+ Y K R
Sbjct: 224 NQSNQYTFPS-----VLTACASVSACRVGVQVHGCIVKSGFKTNIYVQSALIDMYAKCRD 278
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
LE A + ++ + V W + IV R+G + + F M +K + +T S+L
Sbjct: 279 LESARALLEGMEVDDVVSWNSMIVGCVRQGLIEEALSMFGRMHERDMKIDDFTIPSILNC 338
Query: 228 CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
+ H IVK G+ G++D A +VFE +++ K++
Sbjct: 339 FASSRTEMKIASSAHCLIVKPGM---RLTSLGIMD---------SALKVFEGMIE-KDVI 385
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISAS 337
SW A++ G NG Y EA K M+ GI D + S +SAS
Sbjct: 386 SWTALVTGNTHNGFYEEALKLFCNMRVGGI------YPDQIVTASVLSAS 429
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 96/183 (52%), Gaps = 1/183 (0%)
Query: 157 SLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKK 216
++I Y R L DA+ +F NT+ W A I C+ G + FN F EM + IK
Sbjct: 65 TMIVAYSNSRRLADAEQLFRSNPVKNTISWNALISGYCKSGSKVEAFNLFWEMQSDGIKP 124
Query: 217 NSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERV 276
N YT SVL+ C + G Q+H + +K G + D V GL+ MY +C+ + +AE +
Sbjct: 125 NEYTLGSVLRMCTSLLLLLR-GEQIHGHTIKTGFDLDVNVVNGLLAMYAQCKRISEAEYL 183
Query: 277 FELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
F+ + +KN +W +ML GY +NG +A + ++ G Q + + AC+S+SA
Sbjct: 184 FDTMAGEKNNVTWTSMLTGYSQNGFAFKAIECFRDLRRDGNQSNQYTFPSVLTACASVSA 243
Query: 337 SKI 339
++
Sbjct: 244 CRV 246
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/273 (26%), Positives = 119/273 (43%), Gaps = 19/273 (6%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
+ K + + L+ M+ C L++AR L + M + D SW MIVG V +E ++
Sbjct: 256 KSGFKTNIYVQSALIDMYAKCRDLESARALLEGMEVDDVVSWNSMIVGCVRQGLIEEALS 315
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
+F M +R P+ I+ C + M++ H L+ K G + LT
Sbjct: 316 MFGRMHERDMKIDDFTIPS-ILNCFASS---RTEMKIASSAHCLIVKPG----MRLTSLG 367
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
I ++ A VF + + + WTA + N G + + F M I +
Sbjct: 368 I--------MDSALKVFEGMIEKDVISWTALVTGNTHNGFYEEALKLFCNMRVGGIYPDQ 419
Query: 219 YTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE 278
+SVL A + G+Q+H N +K G S V LV MY KC L DA +F
Sbjct: 420 IVTASVLSASAELTLL-EFGQQVHGNYIKSGFPSSLSVNNSLVTMYTKCGSLEDANVIFN 478
Query: 279 LIVDKKNIASWNAMLVGYIRNGL-YVEATKFLY 310
+ + +++ +W ++VG I Y ++ + +Y
Sbjct: 479 SM-EIRDLITWTCIIVGLIEEAQRYFDSMRTVY 510
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 9/123 (7%)
Query: 212 ERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLR 271
+R K +S L G VD+ RQM + E DE+ ++ Y R L
Sbjct: 26 DRTKLHSNLLLGDLSKSGRVDE----ARQMFDKMP----ERDEFTWNTMIVAYSNSRRLA 77
Query: 272 DAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
DAE++F KN SWNA++ GY ++G VEA + M++ GI+ E + + C
Sbjct: 78 DAEQLFR-SNPVKNTISWNALISGYCKSGSKVEAFNLFWEMQSDGIKPNEYTLGSVLRMC 136
Query: 332 SSI 334
+S+
Sbjct: 137 TSL 139
>gi|297719939|ref|NP_001172331.1| Os01g0355000 [Oryza sativa Japonica Group]
gi|53791352|dbj|BAD52598.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|215768699|dbj|BAH00928.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255673214|dbj|BAH91061.1| Os01g0355000 [Oryza sativa Japonica Group]
Length = 877
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 83/290 (28%), Positives = 145/290 (50%), Gaps = 8/290 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEM-PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
N L+ M+ G +D AR++F+E R+ SW ++ YV + I +F EM+
Sbjct: 139 NALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGI 198
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
F CV+ AC + N+E G+QVH ++ ++G +++ +L++ Y K +
Sbjct: 199 QPTEFGFS-----CVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRV 253
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+ A +F ++ + V W A I GH H+ +M + N +T SS+LKAC
Sbjct: 254 DIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKAC 313
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
G + GRQ+H ++K +SD+Y+ GLVDMY K L DA +VF+ + + I
Sbjct: 314 SGA-GAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILC 372
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASK 338
NA++ G G + EA Y ++ G+ + + + + + +S+ A+
Sbjct: 373 -NALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAAS 421
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 84/290 (28%), Positives = 135/290 (46%), Gaps = 11/290 (3%)
Query: 48 FLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRK 107
F N L+ + C + AR++FDE+P SW+ ++ Y + + I F M R
Sbjct: 39 FRNHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGM--RA 96
Query: 108 KGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
+G + + + VLK C + LG QVH + G ++ + +L+ YG F
Sbjct: 97 EG---VCCNEFALPVVLK---CVPDARLGAQVHAMAMATGFGSDVFVANALVAMYGGFGF 150
Query: 168 LEDADFVFSQL-KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
++DA VF++ N V W + + F EM I+ + FS V+
Sbjct: 151 MDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVN 210
Query: 227 ACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
AC G + GRQ+HA +V++G + D + LVDMY K + A +FE + D ++
Sbjct: 211 ACTG-SRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPD-SDV 268
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
SWNA++ G + NG A + L MK SG+ ++ + ACS A
Sbjct: 269 VSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGA 318
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 89/322 (27%), Positives = 144/322 (44%), Gaps = 14/322 (4%)
Query: 14 TCLIKECTFQKDSAGAFELLNHIRK---RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFD 70
+ ++K C+ AGAF+L I + N L+ M+ LD AR++FD
Sbjct: 307 SSILKACS----GAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFD 362
Query: 71 EMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCT 130
M RD +I G + E ++LF E+ RK+G L + VLK+
Sbjct: 363 WMFHRDLILCNALISGCSHGGRHDEALSLFYEL--RKEG---LGVNRTTLAAVLKSTASL 417
Query: 131 MNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKI 190
+QVH L K+G + + LI+ Y K CL DA+ VF + + + T+ I
Sbjct: 418 EAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMI 477
Query: 191 VNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGL 250
+ H F EM R+ ++ + + SS+L AC + G+Q+HA+++K
Sbjct: 478 TALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQ-GKQVHAHLIKRQF 536
Query: 251 ESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLY 310
SD + LV Y KC + DAE F + ++ + SW+AM+ G ++G A +
Sbjct: 537 MSDAFAGNALVYTYAKCGSIEDAELAFSSL-PERGVVSWSAMIGGLAQHGHGKRALELFG 595
Query: 311 LMKASGIQIQESLINDLRIACS 332
M GI + + AC+
Sbjct: 596 RMVDEGINPNHITMTSVLCACN 617
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 110/248 (44%), Gaps = 11/248 (4%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
+N L+ + C L A ++F+E D + MI + I LF EM+++
Sbjct: 442 VNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKG- 500
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
L +++ +L AC E GKQVH L K + +L+ Y K +
Sbjct: 501 ----LEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSI 556
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
EDA+ FS L V W+A I + GH + F M E I N T +SVL AC
Sbjct: 557 EDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCAC 616
Query: 229 --GGVDDDGNCGRQMHANIVKIGLE-SDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
G+ D+ R ++ G++ ++E+ C ++D+ G+ L DA + + + N
Sbjct: 617 NHAGLVDEAK--RYFNSMKEMFGIDRTEEHYSC-MIDLLGRAGKLDDAMELVNSMPFQAN 673
Query: 286 IASWNAML 293
+ W A+L
Sbjct: 674 ASIWGALL 681
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 79/186 (42%), Gaps = 6/186 (3%)
Query: 136 GKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCR 195
G +H L K GS S LI+FY K R A VF ++ V W++ +
Sbjct: 23 GAHLHASLLKSGSL--ASFRNHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSN 80
Query: 196 EGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEY 255
G F M E + N + VLK D G Q+HA + G SD +
Sbjct: 81 NGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCV----PDARLGAQVHAMAMATGFGSDVF 136
Query: 256 VQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKAS 315
V LV MYG + DA RVF ++N SWN ++ Y++N +A + M S
Sbjct: 137 VANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWS 196
Query: 316 GIQIQE 321
GIQ E
Sbjct: 197 GIQPTE 202
>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 781
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 86/283 (30%), Positives = 142/283 (50%), Gaps = 15/283 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N ++ + G++D ARQLFDE P++D +W M+ GY+ +E LF +M +R +
Sbjct: 254 NTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMPERNE- 312
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+W +L V ME+ K+ LF + RN+S ++I Y + +
Sbjct: 313 ------VSW--NAMLAGYVQGERMEMAKE----LFDVMPCRNVSTWNTMITGYAQCGKIS 360
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
+A +F ++ + + V W A I + GH + F +M RE + N +FSS L C
Sbjct: 361 EAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCA 420
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
V G+Q+H +VK G E+ +V L+ MY KC + +A +F+ + K+I SW
Sbjct: 421 DVVAL-ELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAG-KDIVSW 478
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
N M+ GY R+G A +F MK G++ ++ + + ACS
Sbjct: 479 NTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACS 521
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 74/248 (29%), Positives = 116/248 (46%), Gaps = 13/248 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N ++ + CG++ A+ LFD+MP RD SWA MI GY E + LF +M +R+ G
Sbjct: 347 NTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQM-EREGG 405
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ L C + +ELGKQ+HG L K G + +L+ Y K +E
Sbjct: 406 RLNRS----SFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIE 461
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC- 228
+A+ +F ++ + V W I R G F+ M RE +K + T +VL AC
Sbjct: 462 EANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACS 521
Query: 229 --GGVDDDGNCGRQMHANIVK-IGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
G VD GRQ + + G+ + +VD+ G+ LL DA + + + + +
Sbjct: 522 HTGLVDK----GRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPD 577
Query: 286 IASWNAML 293
A W +L
Sbjct: 578 AAIWGTLL 585
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 70/313 (22%), Positives = 117/313 (37%), Gaps = 72/313 (23%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N ++ ++ G+ + AR+LFDEMP RD SW VMI GYV
Sbjct: 99 NGMISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYV--------------------- 137
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
N LGK LF++ R++ ++++ Y + C++
Sbjct: 138 ---------------------RNRNLGKARE--LFEIMPERDVCSWNTMLSGYAQNGCVD 174
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYT--FSSVLKA 227
DA VF ++ N V W A + + + FK RE S+ +K
Sbjct: 175 DARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFK--SRENWALVSWNCLLGGFVKK 232
Query: 228 CGGVD-----DDGNCGRQMHANIVKIGLE-----------------SDEYVQCGLVDMYG 265
V+ D N + N + G D + +V Y
Sbjct: 233 KKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYI 292
Query: 266 KCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLIN 325
+ R++ +A +F+ + + +N SWNAML GY++ A + +M + ++I
Sbjct: 293 QNRMVEEARELFDKMPE-RNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMIT 351
Query: 326 DLRIACSSISASK 338
C IS +K
Sbjct: 352 GY-AQCGKISEAK 363
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/287 (19%), Positives = 128/287 (44%), Gaps = 23/287 (8%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N +L + G +D AR +FD MP ++ SW ++ YV + +E LF K ++
Sbjct: 161 NTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLF----KSREN 216
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
L+ + C+L V + +Q F + R++ ++I Y + ++
Sbjct: 217 WALVSWN-----CLLGGFVKKKKIVEARQ----FFDSMNVRDVVSWNTIITGYAQSGKID 267
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
+A +F + + WTA + + +++ + +E+ + ++N +++++L G
Sbjct: 268 EARQLFDESPVQDVFTWTAMVSGYIQ----NRMVEEARELFDKMPERNEVSWNAML--AG 321
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
V + +M + + + ++ Y +C + +A+ +F+ + K++ SW
Sbjct: 322 YVQGE---RMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKM-PKRDPVSW 377
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
AM+ GY ++G EA + M+ G ++ S + C+ + A
Sbjct: 378 AAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVA 424
>gi|147780607|emb|CAN69113.1| hypothetical protein VITISV_031840 [Vitis vinifera]
Length = 714
Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 90/287 (31%), Positives = 140/287 (48%), Gaps = 14/287 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+RL+ M+ G + A++LFDEMP RD SW ++ G C+ F M + + G
Sbjct: 178 DRLVSMYFKLGYDEDAQRLFDEMPNRDLVSWNSLMSGLSGRGYLGACLNAFCRM-RTESG 236
Query: 110 HMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
P + ++ V+ AC ++ GK +HG++ KLG S + SLIN YGK L
Sbjct: 237 RQ----PNEVTLLSVVSACAXMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFL 292
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+ A +F ++ + V W + +V + G+ + + F M R I + T ++L+AC
Sbjct: 293 DAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRAC 352
Query: 229 GGVDDDGNCGRQ---MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
D GRQ +HA I + G +D + L+++Y K L +E +FE I D+
Sbjct: 353 ----TDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDT 408
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
IA W AML GY + EA K LM G+++ L ACS
Sbjct: 409 IA-WTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACS 454
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 122/248 (49%), Gaps = 11/248 (4%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
+N L+ M+ G LD A QLF+EMP+R SW M+V + ++ + LF +MKR
Sbjct: 279 VNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLF-NLMKRAG 337
Query: 109 GHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
+ P +V +L+AC T + +H + + G + +I + +L+N Y K
Sbjct: 338 -----INPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGR 392
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
L ++ +F ++K +T+ WTA + + F M +E ++ + TF+ +L A
Sbjct: 393 LNASEDIFEEIKDRDTIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSA 452
Query: 228 C--GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
C G+ ++G ++ + + ++ D Y C +VD+ G+ L DA + + + + +
Sbjct: 453 CSHSGLVEEGKKYFEIMSEVYRVEPRLDHY-SC-MVDLLGRSGRLEDAYELIKSMPMEPS 510
Query: 286 IASWNAML 293
W A+L
Sbjct: 511 SGVWGALL 518
Score = 41.6 bits (96), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 84/192 (43%), Gaps = 11/192 (5%)
Query: 8 ITTDMYT--CLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTA 65
I D T L++ CT A + +I R ++ LL ++ G+L+ +
Sbjct: 338 INPDQATMVALLRACTDTGLGRQAESIHAYIH-RCGFNADIIIATALLNLYAKLGRLNAS 396
Query: 66 RQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLK 125
+F+E+ RD +W M+ GY A +E I LF M+K + F +L
Sbjct: 397 EDIFEEIKDRDTIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTF-----THLLS 451
Query: 126 ACVCTMNMELGKQVHGLLFKLGS-SRNISLTGSLINFYGKFRCLEDA-DFVFSQLKRHNT 183
AC + +E GK+ ++ ++ + +++ G+ LEDA + + S ++
Sbjct: 452 ACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSS 511
Query: 184 VVWTAKIVNNCR 195
VW A ++ CR
Sbjct: 512 GVWGA-LLGACR 522
Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 51/98 (52%), Gaps = 4/98 (4%)
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
+HA ++K SD ++ LV MY K DA+R+F+ + + +++ SWN+++ G G
Sbjct: 161 IHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPN-RDLVSWNSLMSGLSGRG 219
Query: 301 LYVEA--TKFLYLMKASGIQIQESLINDLRIACSSISA 336
Y+ A F + SG Q E + + AC+ + A
Sbjct: 220 -YLGACLNAFCRMRTESGRQPNEVTLLSVVSACAXMGA 256
>gi|125570322|gb|EAZ11837.1| hypothetical protein OsJ_01713 [Oryza sativa Japonica Group]
Length = 877
Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 83/290 (28%), Positives = 145/290 (50%), Gaps = 8/290 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEM-PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
N L+ M+ G +D AR++F+E R+ SW ++ YV + I +F EM+
Sbjct: 139 NALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGI 198
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
F CV+ AC + N+E G+QVH ++ ++G +++ +L++ Y K +
Sbjct: 199 QPTEFGFS-----CVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRV 253
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+ A +F ++ + V W A I GH H+ +M + N +T SS+LKAC
Sbjct: 254 DIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKAC 313
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
G + GRQ+H ++K +SD+Y+ GLVDMY K L DA +VF+ + + I
Sbjct: 314 SGA-GAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILC 372
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASK 338
NA++ G G + EA Y ++ G+ + + + + + +S+ A+
Sbjct: 373 -NALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAAS 421
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 84/290 (28%), Positives = 134/290 (46%), Gaps = 11/290 (3%)
Query: 48 FLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRK 107
F N L+ + C + AR+ FDE+P SW+ ++ Y + + I F M R
Sbjct: 39 FRNHLISFYSKCRRPCCARRFFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGM--RA 96
Query: 108 KGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
+G + + + VLK C + LG QVH + G ++ + +L+ YG F
Sbjct: 97 EG---VCCNEFALPVVLK---CVPDARLGAQVHAMAMATGFGSDVFVANALVAMYGGFGF 150
Query: 168 LEDADFVFSQL-KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
++DA VF++ N V W + + F EM I+ + FS V+
Sbjct: 151 MDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVN 210
Query: 227 ACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
AC G + GRQ+HA +V++G + D + LVDMY K + A +FE + D ++
Sbjct: 211 ACTG-SRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPD-SDV 268
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
SWNA++ G + NG A + L MK SG+ ++ + ACS A
Sbjct: 269 VSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGA 318
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 89/322 (27%), Positives = 144/322 (44%), Gaps = 14/322 (4%)
Query: 14 TCLIKECTFQKDSAGAFELLNHIRK---RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFD 70
+ ++K C+ AGAF+L I + N L+ M+ LD AR++FD
Sbjct: 307 SSILKACS----GAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFD 362
Query: 71 EMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCT 130
M RD +I G + E ++LF E+ RK+G L + VLK+
Sbjct: 363 WMFHRDLILCNALISGCSHGGRHDEALSLFYEL--RKEG---LGVNRTTLAAVLKSTASL 417
Query: 131 MNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKI 190
+QVH L K+G + + LI+ Y K CL DA+ VF + + + T+ I
Sbjct: 418 EAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMI 477
Query: 191 VNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGL 250
+ H F EM R+ ++ + + SS+L AC + G+Q+HA+++K
Sbjct: 478 TALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQ-GKQVHAHLIKRQF 536
Query: 251 ESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLY 310
SD + LV Y KC + DAE F + ++ + SW+AM+ G ++G A +
Sbjct: 537 MSDAFAGNALVYTYAKCGSIEDAELAFSSL-PERGVVSWSAMIGGLAQHGHGKRALELFG 595
Query: 311 LMKASGIQIQESLINDLRIACS 332
M GI + + AC+
Sbjct: 596 RMVDEGINPNHITMTSVLCACN 617
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 110/248 (44%), Gaps = 11/248 (4%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
+N L+ + C L A ++F+E D + MI + I LF EM+++
Sbjct: 442 VNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKG- 500
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
L +++ +L AC E GKQVH L K + +L+ Y K +
Sbjct: 501 ----LEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSI 556
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
EDA+ FS L V W+A I + GH + F M E I N T +SVL AC
Sbjct: 557 EDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCAC 616
Query: 229 --GGVDDDGNCGRQMHANIVKIGLE-SDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
G+ D+ R ++ G++ ++E+ C ++D+ G+ L DA + + + N
Sbjct: 617 NHAGLVDEAK--RYFNSMKEMFGIDRTEEHYSC-MIDLLGRAGKLDDAMELVNSMPFQAN 673
Query: 286 IASWNAML 293
+ W A+L
Sbjct: 674 ASIWGALL 681
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 78/186 (41%), Gaps = 6/186 (3%)
Query: 136 GKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCR 195
G +H L K GS S LI+FY K R A F ++ V W++ +
Sbjct: 23 GAHLHASLLKSGSL--ASFRNHLISFYSKCRRPCCARRFFDEIPDPCHVSWSSLVTAYSN 80
Query: 196 EGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEY 255
G F M E + N + VLK D G Q+HA + G SD +
Sbjct: 81 NGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCV----PDARLGAQVHAMAMATGFGSDVF 136
Query: 256 VQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKAS 315
V LV MYG + DA RVF ++N SWN ++ Y++N +A + M S
Sbjct: 137 VANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWS 196
Query: 316 GIQIQE 321
GIQ E
Sbjct: 197 GIQPTE 202
>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
Length = 673
Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 90/287 (31%), Positives = 141/287 (49%), Gaps = 17/287 (5%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ + S G + +A+++FDE+P++D SW MI GY + Y+E + LF EMMK
Sbjct: 138 LITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTN---- 193
Query: 112 LLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
V P +V VL AC + ++ELG+QVH + G N+ + +LI+ Y K +E
Sbjct: 194 --VRPDEGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVET 251
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC-- 228
A +F L + V W I + + F+EM R N T S+L AC
Sbjct: 252 ACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAH 311
Query: 229 -GGVDDDGNCGRQMHANIVK--IGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
G +D GR +H I K + + ++ L+DMY KC + A +VF ++ K+
Sbjct: 312 LGAID----IGRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSML-HKS 366
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
++SWNAM+ G+ +G M+ +GI+ + L ACS
Sbjct: 367 LSSWNAMIFGFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACS 413
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 76/291 (26%), Positives = 123/291 (42%), Gaps = 38/291 (13%)
Query: 80 WAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQV 139
W M+ GY +D + L+ M+ + L+ ++ +LK+C + E G+Q+
Sbjct: 34 WNTMLRGYALSSDPVSALKLYVVMIS-----LGLLPNSYTFPFLLKSCAKSKAFEEGQQI 88
Query: 140 HGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFS----------------------- 176
HG + KLG ++ + SLI+ Y + LEDA VF
Sbjct: 89 HGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYTALITGYASSGNI 148
Query: 177 --------QLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
++ + V W A I G + + FKEM + ++ + T +VL AC
Sbjct: 149 RSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPDEGTMVTVLSAC 208
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
GRQ+H+ I G S+ + L+D+Y KC + A +FE + K++ S
Sbjct: 209 AQ-SRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGLFEGL-SCKDVVS 266
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKI 339
WN ++ GY LY EA M SG + I + AC+ + A I
Sbjct: 267 WNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHLGAIDI 317
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 69/261 (26%), Positives = 125/261 (47%), Gaps = 15/261 (5%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L +N L+ ++ CGQ++TA LF+ + +D SW +I GY + Y+E + LF EM++
Sbjct: 233 LKIVNALIDLYSKCGQVETACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLR 292
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLL-FKLGSSRNI-SLTGSLINFYG 163
+ + IV +L AC +++G+ +H + KL N SL SLI+ Y
Sbjct: 293 SGESPNDVT-----IVSILPACAHLGAIDIGRWIHVYIDKKLKDVTNAPSLRTSLIDMYA 347
Query: 164 KFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSS 223
K +E A VF+ + + W A I G + F+ F M + I+ + TF
Sbjct: 348 KCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRANAGFDLFSRMRKNGIEPDDITFVG 407
Query: 224 VLKAC---GGVDDDGNCGRQMHANIVKIGLESDEYVQCG-LVDMYGKCRLLRDAERVFEL 279
+L AC G +D GR + ++ + + + G ++D+ G L ++A+ + +
Sbjct: 408 LLSACSHSGKLD----LGRHIFKSMTQDYDITPKLEHYGCMIDLLGHSGLFKEAKEMIKT 463
Query: 280 IVDKKNIASWNAMLVGYIRNG 300
+ + + W ++L R+G
Sbjct: 464 MPMEPDGVIWCSLLKACRRHG 484
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 79/189 (41%), Gaps = 31/189 (16%)
Query: 174 VFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDD 233
VF+ ++ N ++W + + M + NSYTF +LK+C
Sbjct: 22 VFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSCAK-SK 80
Query: 234 DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE------------LI- 280
G+Q+H +++K+G E D YV L+ MY + L DA +VF+ LI
Sbjct: 81 AFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYTALIT 140
Query: 281 -----------------VDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESL 323
+ K++ SWNAM+ GY G Y EA + M + ++ E
Sbjct: 141 GYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPDEGT 200
Query: 324 INDLRIACS 332
+ + AC+
Sbjct: 201 MVTVLSACA 209
>gi|108862806|gb|ABA99524.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 1176
Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 86/305 (28%), Positives = 145/305 (47%), Gaps = 8/305 (2%)
Query: 14 TCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMP 73
+ L+ C D +L +++ K I + LL ++V CG ++TA +F+
Sbjct: 248 SSLLAACASLGDLQKGTQLHSYLFK-AGISSDYIMEGSLLDLYVKCGDVETALVIFNSSD 306
Query: 74 LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNM 133
+ W +M+V + + D + LF +M +P C+L+ C CT +
Sbjct: 307 RTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYP-----CILRTCTCTREI 361
Query: 134 ELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNN 193
+LG+Q+H L K G ++ ++G LI+ Y K+ LE A V LK + V WT+ I
Sbjct: 362 DLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGY 421
Query: 194 CREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESD 253
+ FKEM + I ++ +S + C G++ G Q+HA I G D
Sbjct: 422 VQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQ-GLQIHARIYVSGYSGD 480
Query: 254 EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMK 313
+ LV++Y +C +R+A FE I K I +WN ++ G+ ++GL+ EA K M
Sbjct: 481 VSIWNALVNLYARCGRIREAFSSFEEIEHKDEI-TWNGLVSGFAQSGLHEEALKVFMRMD 539
Query: 314 ASGIQ 318
SG++
Sbjct: 540 QSGVK 544
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 82/287 (28%), Positives = 139/287 (48%), Gaps = 7/287 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N ++ +++ CG A ++F +MP RD ++ +I G+ + + +F EM
Sbjct: 182 NAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSG-- 239
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
L I +L AC +++ G Q+H LFK G S + + GSL++ Y K +E
Sbjct: 240 ---LSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVE 296
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A +F+ R N V+W +V + + F F +M I+ N +T+ +L+ C
Sbjct: 297 TALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTC- 355
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ + G Q+H+ VK G ESD YV L+DMY K L A RV E++ +K++ SW
Sbjct: 356 TCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEML-KEKDVVSW 414
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+M+ GY+++ +A M+ GI + C+ I+A
Sbjct: 415 TSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINA 461
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 78/323 (24%), Positives = 148/323 (45%), Gaps = 10/323 (3%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
Y C+++ CT ++ E ++ + + + + L+ M+ G L+ AR++ + +
Sbjct: 348 YPCILRTCTCTRE-IDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEML 406
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI-IVCVLKACVCTM 131
+D SW MI GYV ++ + F EM K ++P I + + C
Sbjct: 407 KEKDVVSWTSMIAGYVQHECCKDALAAFKEMQK------CGIWPDNIGLASAISGCAGIN 460
Query: 132 NMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIV 191
M G Q+H ++ G S ++S+ +L+N Y + + +A F +++ + + W +
Sbjct: 461 AMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVS 520
Query: 192 NNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLE 251
+ G + F M + +K N +TF S L A + + G+Q+HA ++K G
Sbjct: 521 GFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQ-GKQIHARVIKTGHS 579
Query: 252 SDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYL 311
+ V L+ +YGKC DA+ F + ++N SWN ++ ++G +EA
Sbjct: 580 FETEVGNALISLYGKCGSFEDAKMEFSEM-SERNEVSWNTIITSCSQHGRGLEALDLFDQ 638
Query: 312 MKASGIQIQESLINDLRIACSSI 334
MK GI+ + + ACS +
Sbjct: 639 MKKEGIKPNDVTFIGVLAACSHV 661
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 76/273 (27%), Positives = 130/273 (47%), Gaps = 15/273 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ ++ G + AR++F+E+ RD SW M+ GY +E + L+ +M
Sbjct: 81 NLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQM------ 134
Query: 110 HMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFY---GKF 165
H V P +++ VL +C G+ +H +K G I + ++I Y G F
Sbjct: 135 HRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSF 194
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
R A+ VF + +TV + I + + GH F+EM + + T SS+L
Sbjct: 195 RL---AERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLL 251
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
AC + D G Q+H+ + K G+ SD ++ L+D+Y KC + A +F D+ N
Sbjct: 252 AACASLGDLQK-GTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFN-SSDRTN 309
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
+ WN MLV + + ++ + M+A+GI+
Sbjct: 310 VVLWNLMLVAFGQINDLAKSFELFCQMQAAGIR 342
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 65/246 (26%), Positives = 114/246 (46%), Gaps = 9/246 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ ++ CG++ A F+E+ +D +W ++ G+ ++E + +F M +
Sbjct: 485 NALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVK 544
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
H + F V L A ++ GKQ+H + K G S + +LI+ YGK E
Sbjct: 545 HNVFTF-----VSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFE 599
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
DA FS++ N V W I + + G + + F +M +E IK N TF VL AC
Sbjct: 600 DAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACS 659
Query: 230 --GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
G+ ++G + ++ I D Y C ++D++G+ L A++ E + +
Sbjct: 660 HVGLVEEGLSYFKSMSDEYGIRPRPDHYA-C-VIDIFGRAGQLDRAKKFIEEMPIAADAM 717
Query: 288 SWNAML 293
W +L
Sbjct: 718 VWRTLL 723
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 65/264 (24%), Positives = 116/264 (43%), Gaps = 8/264 (3%)
Query: 72 MPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCT- 130
M R S + G++ D + ++LFA+ ++ G L F C L+AC
Sbjct: 1 MTRRGAASLGRTLAGFLAHEDPAKVLSLFADKARQHGGLGPLDF-----ACALRACRGNG 55
Query: 131 MNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKI 190
++ ++H G + + LI+ Y K + A VF +L + V W A +
Sbjct: 56 RRWQVVPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAML 115
Query: 191 VNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGL 250
+ G + +++M R + Y SSVL +C + GR +HA K G
Sbjct: 116 SGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQ-GRLIHAQGYKHGF 174
Query: 251 ESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLY 310
S+ +V ++ +Y +C R AERVF + ++ ++N ++ G+ + G A +
Sbjct: 175 CSEIFVGNAVITLYLRCGSFRLAERVF-CDMPHRDTVTFNTLISGHAQCGHGEHALEIFE 233
Query: 311 LMKASGIQIQESLINDLRIACSSI 334
M+ SG+ I+ L AC+S+
Sbjct: 234 EMQFSGLSPDCVTISSLLAACASL 257
>gi|115488988|ref|NP_001066981.1| Os12g0552300 [Oryza sativa Japonica Group]
gi|113649488|dbj|BAF30000.1| Os12g0552300 [Oryza sativa Japonica Group]
Length = 1175
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 86/305 (28%), Positives = 145/305 (47%), Gaps = 8/305 (2%)
Query: 14 TCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMP 73
+ L+ C D +L +++ K I + LL ++V CG ++TA +F+
Sbjct: 248 SSLLAACASLGDLQKGTQLHSYLFK-AGISSDYIMEGSLLDLYVKCGDVETALVIFNSSD 306
Query: 74 LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNM 133
+ W +M+V + + D + LF +M +P C+L+ C CT +
Sbjct: 307 RTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYP-----CILRTCTCTREI 361
Query: 134 ELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNN 193
+LG+Q+H L K G ++ ++G LI+ Y K+ LE A V LK + V WT+ I
Sbjct: 362 DLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGY 421
Query: 194 CREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESD 253
+ FKEM + I ++ +S + C G++ G Q+HA I G D
Sbjct: 422 VQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQ-GLQIHARIYVSGYSGD 480
Query: 254 EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMK 313
+ LV++Y +C +R+A FE I K I +WN ++ G+ ++GL+ EA K M
Sbjct: 481 VSIWNALVNLYARCGRIREAFSSFEEIEHKDEI-TWNGLVSGFAQSGLHEEALKVFMRMD 539
Query: 314 ASGIQ 318
SG++
Sbjct: 540 QSGVK 544
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 82/287 (28%), Positives = 139/287 (48%), Gaps = 7/287 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N ++ +++ CG A ++F +MP RD ++ +I G+ + + +F EM
Sbjct: 182 NAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSG-- 239
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
L I +L AC +++ G Q+H LFK G S + + GSL++ Y K +E
Sbjct: 240 ---LSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVE 296
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A +F+ R N V+W +V + + F F +M I+ N +T+ +L+ C
Sbjct: 297 TALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTC- 355
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ + G Q+H+ VK G ESD YV L+DMY K L A RV E++ +K++ SW
Sbjct: 356 TCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEML-KEKDVVSW 414
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+M+ GY+++ +A M+ GI + C+ I+A
Sbjct: 415 TSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINA 461
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 78/323 (24%), Positives = 148/323 (45%), Gaps = 10/323 (3%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
Y C+++ CT ++ E ++ + + + + L+ M+ G L+ AR++ + +
Sbjct: 348 YPCILRTCTCTRE-IDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEML 406
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI-IVCVLKACVCTM 131
+D SW MI GYV ++ + F EM K ++P I + + C
Sbjct: 407 KEKDVVSWTSMIAGYVQHECCKDALAAFKEMQK------CGIWPDNIGLASAISGCAGIN 460
Query: 132 NMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIV 191
M G Q+H ++ G S ++S+ +L+N Y + + +A F +++ + + W +
Sbjct: 461 AMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVS 520
Query: 192 NNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLE 251
+ G + F M + +K N +TF S L A + + G+Q+HA ++K G
Sbjct: 521 GFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQ-GKQIHARVIKTGHS 579
Query: 252 SDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYL 311
+ V L+ +YGKC DA+ F + ++N SWN ++ ++G +EA
Sbjct: 580 FETEVGNALISLYGKCGSFEDAKMEFSEM-SERNEVSWNTIITSCSQHGRGLEALDLFDQ 638
Query: 312 MKASGIQIQESLINDLRIACSSI 334
MK GI+ + + ACS +
Sbjct: 639 MKKEGIKPNDVTFIGVLAACSHV 661
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 76/273 (27%), Positives = 130/273 (47%), Gaps = 15/273 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ ++ G + AR++F+E+ RD SW M+ GY +E + L+ +M
Sbjct: 81 NLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQM------ 134
Query: 110 HMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFY---GKF 165
H V P +++ VL +C G+ +H +K G I + ++I Y G F
Sbjct: 135 HRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSF 194
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
R A+ VF + +TV + I + + GH F+EM + + T SS+L
Sbjct: 195 RL---AERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLL 251
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
AC + D G Q+H+ + K G+ SD ++ L+D+Y KC + A +F D+ N
Sbjct: 252 AACASLGDLQK-GTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFN-SSDRTN 309
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
+ WN MLV + + ++ + M+A+GI+
Sbjct: 310 VVLWNLMLVAFGQINDLAKSFELFCQMQAAGIR 342
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 65/246 (26%), Positives = 114/246 (46%), Gaps = 9/246 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ ++ CG++ A F+E+ +D +W ++ G+ ++E + +F M +
Sbjct: 485 NALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVK 544
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
H + F V L A ++ GKQ+H + K G S + +LI+ YGK E
Sbjct: 545 HNVFTF-----VSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFE 599
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
DA FS++ N V W I + + G + + F +M +E IK N TF VL AC
Sbjct: 600 DAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACS 659
Query: 230 --GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
G+ ++G + ++ I D Y C ++D++G+ L A++ E + +
Sbjct: 660 HVGLVEEGLSYFKSMSDEYGIRPRPDHYA-C-VIDIFGRAGQLDRAKKFIEEMPIAADAM 717
Query: 288 SWNAML 293
W +L
Sbjct: 718 VWRTLL 723
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/264 (24%), Positives = 116/264 (43%), Gaps = 8/264 (3%)
Query: 72 MPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCT- 130
M R S + G++ D + ++LFA+ ++ G L F C L+AC
Sbjct: 1 MTRRGAASLGRTLAGFLAHEDPAKVLSLFADKARQHGGLGPLDF-----ACALRACRGNG 55
Query: 131 MNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKI 190
++ ++H G + + LI+ Y K + A VF +L + V W A +
Sbjct: 56 RRWQVVPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAML 115
Query: 191 VNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGL 250
+ G + +++M R + Y SSVL +C + GR +HA K G
Sbjct: 116 SGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQ-GRLIHAQGYKHGF 174
Query: 251 ESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLY 310
S+ +V ++ +Y +C R AERVF + ++ ++N ++ G+ + G A +
Sbjct: 175 CSEIFVGNAVITLYLRCGSFRLAERVF-CDMPHRDTVTFNTLISGHAQCGHGEHALEIFE 233
Query: 311 LMKASGIQIQESLINDLRIACSSI 334
M+ SG+ I+ L AC+S+
Sbjct: 234 EMQFSGLSPDCVTISSLLAACASL 257
>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
Length = 837
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 82/285 (28%), Positives = 137/285 (48%), Gaps = 7/285 (2%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+V G +D ARQ+FD + RD +++ VMI GY D ++ LF M +
Sbjct: 203 LVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEGFKPN 262
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+ F + +L C + GK VH G ++ + +LI Y +E A
Sbjct: 263 RISF-----LSILDGCSTPEALAWGKAVHAQCMNTGLVDDVRVATALIRMYMGCGSIEGA 317
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
VF ++K + V WT I + F F M E I+ + T+ ++ AC
Sbjct: 318 RRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHIINACAS- 376
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
D + R++H+ +V+ G +D V LV MY KC ++DA +VF+ + ++++ SW+A
Sbjct: 377 SADLSLAREIHSQVVRAGFGTDLLVDTALVHMYAKCGAIKDARQVFDAM-SRRDVVSWSA 435
Query: 292 MLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
M+ Y+ NG EA + +LMK + ++ +L AC + A
Sbjct: 436 MIGAYVENGCGEEAFETFHLMKRNNVEPDVVTYINLLNACGHLGA 480
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 87/329 (26%), Positives = 147/329 (44%), Gaps = 14/329 (4%)
Query: 8 ITTDMYTCLIKECTFQKDSAGAFELLNHI---RKRVNIKPTLLFLNRLLLMHVSCGQLDT 64
I + Y L + C +D+ ++ +HI +++NI LN L+ +H CG +
Sbjct: 59 IDSRTYVKLFQRCMMLRDAGLGKQVRDHIIQSGRQLNIYE----LNTLIKLHSICGNMLE 114
Query: 65 ARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVL 124
ARQ FD + + +W +I GY + +E LF +M+ ++ F + VL
Sbjct: 115 ARQTFDSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITF-----LIVL 169
Query: 125 KACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTV 184
AC ++LGK+ H + K+G + + +L++ Y K ++ A VF L + +
Sbjct: 170 DACSSPAGLKLGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVS 229
Query: 185 VWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHAN 244
+ I + G + F F M +E K N +F S+L C + G+ +HA
Sbjct: 230 TFNVMIGGYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGC-STPEALAWGKAVHAQ 288
Query: 245 IVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVE 304
+ GL D V L+ MY C + A RVF+ + +++ SW M+ GY N +
Sbjct: 289 CMNTGLVDDVRVATALIRMYMGCGSIEGARRVFDKM-KVRDVVSWTVMIRGYAENSNIED 347
Query: 305 ATKFLYLMKASGIQIQESLINDLRIACSS 333
A M+ GIQ + AC+S
Sbjct: 348 AFGLFATMQEEGIQPDRITYIHIINACAS 376
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 73/257 (28%), Positives = 134/257 (52%), Gaps = 13/257 (5%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M++ CG ++ AR++FD+M +RD SW VMI GY + ++ ++ LFA M +
Sbjct: 304 LIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEG---- 359
Query: 112 LLVFPAWII-VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
+ P I + ++ AC + ++ L +++H + + G ++ + +L++ Y K ++D
Sbjct: 360 --IQPDRITYIHIINACASSADLSLAREIHSQVVRAGFGTDLLVDTALVHMYAKCGAIKD 417
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG- 229
A VF + R + V W+A I G + F F M R ++ + T+ ++L ACG
Sbjct: 418 ARQVFDAMSRRDVVSWSAMIGAYVENGCGEEAFETFHLMKRNNVEPDVVTYINLLNACGH 477
Query: 230 -GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
G D G +++ +K L S V L++M K + A +FE +V ++++ +
Sbjct: 478 LGALD---LGMEIYTQAIKADLVSHIPVGNALINMNVKHGSIERARYIFENMV-QRDVVT 533
Query: 289 WNAMLVGYIRNGLYVEA 305
WN M+ GY +G EA
Sbjct: 534 WNVMIGGYSLHGNAREA 550
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 80/288 (27%), Positives = 133/288 (46%), Gaps = 18/288 (6%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
Y +I C D + A E+ + + R LL L+ M+ CG + ARQ+FD M
Sbjct: 367 YIHIINACASSADLSLAREIHSQV-VRAGFGTDLLVDTALVHMYAKCGAIKDARQVFDAM 425
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWII-VCVLKACVCTM 131
RD SW+ MI YV+ +E F +MKR V P + + +L AC
Sbjct: 426 SRRDVVSWSAMIGAYVENGCGEEAFETF-HLMKRNN-----VEPDVVTYINLLNACGHLG 479
Query: 132 NMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIV 191
++LG +++ K +I + +LIN K +E A ++F + + + V W I
Sbjct: 480 ALDLGMEIYTQAIKADLVSHIPVGNALINMNVKHGSIERARYIFENMVQRDVVTWNVMIG 539
Query: 192 NNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC---GGVDDDGNCGRQMHANIV-- 246
G+ + + F M +ER + NS TF VL AC G V++ GR+ + ++
Sbjct: 540 GYSLHGNAREALDLFDRMLKERFRPNSVTFVGVLSACSRAGFVEE----GRRFFSYLLDG 595
Query: 247 KIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLV 294
+ + + E C +VD+ G+ L +AE + + K N + W+ +L
Sbjct: 596 RGIVPTMELYGC-MVDLLGRAGELDEAELLINRMPLKPNSSIWSTLLA 642
>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 905
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 91/334 (27%), Positives = 156/334 (46%), Gaps = 15/334 (4%)
Query: 2 DNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQ 61
D + L TT Y ++ C+ K + +HI + + + N L+ M+ CG
Sbjct: 324 DGVALNRTT--YLSILNACSTSKALEAGKLIHSHISEDGH-SSDVQIGNALISMYARCGD 380
Query: 62 LDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR--KKGHMLLVFPAWI 119
L AR+LF MP RD SW +I GY D E + L+ +M K G + +
Sbjct: 381 LPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLH---- 436
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
+L AC + GK +H + + G N L +L+N Y + L +A VF +
Sbjct: 437 ---LLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQ 493
Query: 180 RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGR 239
+ + W + I + + G + + F+EM E ++ ++ TF+SVL C + G+
Sbjct: 494 ARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKN-PEALELGK 552
Query: 240 QMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRN 299
Q+H I + GL+ D + L++MY +C L+DA VF + +++ SW AM+ G
Sbjct: 553 QIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSL-QHRDVMSWTAMIGGCADQ 611
Query: 300 GLYVEATKFLYLMKASGIQIQE-SLINDLRIACS 332
G ++A + + M+ G + + S + AC+
Sbjct: 612 GEDMKAIELFWQMQNEGFRPPDGSTFTSILSACN 645
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 89/335 (26%), Positives = 156/335 (46%), Gaps = 16/335 (4%)
Query: 7 PITTD--MYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDT 64
P TD Y L++ CT ++ A + + + + P + N L+ M+V C +
Sbjct: 22 PTETDRATYVALLQNCTRKRLLPEAKRIHAQMVE-AGVGPDIFLSNLLINMYVKCRSVLD 80
Query: 65 ARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWII-VCV 123
A Q+F EMP RD SW +I Y ++ LF EM P I + +
Sbjct: 81 AHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAG------FIPNKITYISI 134
Query: 124 LKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNT 183
L AC +E GK++H + K G R+ + SL++ YGK L A VF+ + +
Sbjct: 135 LTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDV 194
Query: 184 VVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA--CGGVDDDGNCGRQM 241
V + + ++ + + F +M E I + T+ ++L A + D+ G+++
Sbjct: 195 VSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDE---GKRI 251
Query: 242 HANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGL 301
H V+ GL SD V LV M +C + A++ F+ I D +++ +NA++ ++G
Sbjct: 252 HKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGIAD-RDVVVYNALIAALAQHGH 310
Query: 302 YVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
VEA + Y M++ G+ + + + ACS+ A
Sbjct: 311 NVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKA 345
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/287 (26%), Positives = 134/287 (46%), Gaps = 7/287 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N LL M+ CG L ARQ+F + RD S+ M+ Y A +EC+ LF +M
Sbjct: 167 NSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGIS 226
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ + + +L A ++ GK++H L + G + +I + +L+ + ++
Sbjct: 227 PDKVTY-----INLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVD 281
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A F + + VV+ A I + GH + F + M + + N T+ S+L AC
Sbjct: 282 SAKQAFKGIADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACS 341
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
G+ +H++I + G SD + L+ MY +C L A +F + K+++ SW
Sbjct: 342 -TSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELF-YTMPKRDLISW 399
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
NA++ GY R EA + M++ G++ L AC++ SA
Sbjct: 400 NAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSA 446
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/262 (25%), Positives = 130/262 (49%), Gaps = 7/262 (2%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M V CG +D+A+Q F + RD + +I +A + + F + + + +
Sbjct: 270 LVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAA---LAQHGHNVEAFEQYYRMRSDGV 326
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
L ++ +L AC + +E GK +H + + G S ++ + +LI+ Y + L A
Sbjct: 327 ALNRTTYL--SILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKA 384
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
+F + + + + W A I R + +K+M E +K TF +L AC
Sbjct: 385 RELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANS 444
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
+ G+ +H +I++ G++S+ ++ L++MY +C L +A+ VFE +++ SWN+
Sbjct: 445 SAYAD-GKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEG-TQARDVISWNS 502
Query: 292 MLVGYIRNGLYVEATKFLYLMK 313
M+ G+ ++G Y A K M+
Sbjct: 503 MIAGHAQHGSYETAYKLFQEMQ 524
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 77/269 (28%), Positives = 118/269 (43%), Gaps = 32/269 (11%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R IK N L+ M+ CG L A+ +F+ RD SW MI G+ Y+
Sbjct: 459 RSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYK 518
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
LF EM + + F VL C +ELGKQ+HG + + G +++L +L
Sbjct: 519 LFQEMQNEELEPDNITF-----ASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNAL 573
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKK-N 217
IN Y + L+DA VF L+ + + WTA I +G + F +M E + +
Sbjct: 574 INMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPPD 633
Query: 218 SYTFSSVLKACGGVDDDGNCGRQMHANIVKIG------LESD-------EYVQCGLVDMY 264
TF+S+L AC HA +V G +ES+ E+ C LV +
Sbjct: 634 GSTFTSILSACN------------HAGLVLEGYQIFSSMESEYGVLPTIEHYGC-LVGLL 680
Query: 265 GKCRLLRDAERVFELIVDKKNIASWNAML 293
G+ R ++AE + + + A W +L
Sbjct: 681 GRARRFQEAETLINQMPFPPDAAVWETLL 709
>gi|356566136|ref|XP_003551291.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g47840-like [Glycine max]
Length = 733
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 79/284 (27%), Positives = 138/284 (48%), Gaps = 7/284 (2%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
+N L M+ CG+ D +LF++M + D SW +I YV + + + + F M K
Sbjct: 263 INTLATMYNKCGKPDYVMRLFEKMRMPDVVSWTTLISTYVQMGEEEHAVEAFKRMRKSYV 322
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
F A V+ +C + G+Q+HG + +LG +S+ S+I Y K L
Sbjct: 323 SPNKYTFAA-----VISSCANLAAAKWGEQIHGHVLRLGLVNALSVANSIITLYSKCGLL 377
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+ A VF + R + + W+ I + G+ + F+ M RE K N + SSVL C
Sbjct: 378 KSASLVFHGITRKDIISWSTIISVYSQGGYAKEAFDYLSWMRREGPKPNEFALSSVLSVC 437
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
G + G+Q+HA+++ IG++ + V ++ MY KC +++A ++F + +I S
Sbjct: 438 GSMALLEQ-GKQVHAHLLCIGIDHEAMVHSAIISMYSKCGSVQEASKIFNGM-KINDIIS 495
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
W AM+ GY +G EA + + G++ + + AC+
Sbjct: 496 WTAMINGYAEHGYSQEAINLFEKISSVGLKPDYVMFIGVLTACN 539
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 87/300 (29%), Positives = 142/300 (47%), Gaps = 20/300 (6%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
+L LN L V GQL AR +FD+M RD SW +I GYV+ +D E + LF+ M
Sbjct: 57 MLELNSELKQLVKQGQLCKARYMFDKMTHRDEISWTTLIAGYVNASDSYEALILFSNM-- 114
Query: 106 RKKGHMLLVFPA-----WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLIN 160
V P ++I LKAC +N+ G+ +HG K G ++ ++ +LI+
Sbjct: 115 -------WVHPGPQRDQFMISVALKACALGVNICFGELLHGFSVKSGLIHSVFVSSALID 167
Query: 161 FYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYT 220
Y K +E VF ++ N V WTA I G+ + F EM R ++ +S+T
Sbjct: 168 MYMKVGKIEQGCRVFEKMMTRNVVSWTAIIAGLVHAGYNMEGLLYFSEMWRSKVGYDSHT 227
Query: 221 FSSVLKACGGVDDDG--NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE 278
F+ LKA D + G+ +H +K G + +V L MY KC R+FE
Sbjct: 228 FAIALKASA---DSSLLHHGKAIHTQTIKQGFDESSFVINTLATMYNKCGKPDYVMRLFE 284
Query: 279 LIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASK 338
+ ++ SW ++ Y++ G A + M+ S + + + +C++++A+K
Sbjct: 285 KM-RMPDVVSWTTLISTYVQMGEEEHAVEAFKRMRKSYVSPNKYTFAAVISSCANLAAAK 343
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 76/305 (24%), Positives = 143/305 (46%), Gaps = 7/305 (2%)
Query: 31 ELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDV 90
ELL+ + + ++ + L+ M++ G+++ ++F++M R+ SW +I G V
Sbjct: 144 ELLHGFSVKSGLIHSVFVSSALIDMYMKVGKIEQGCRVFEKMMTRNVVSWTAIIAGLVHA 203
Query: 91 ADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSR 150
E + F+EM + K G+ F LKA + + GK +H K G
Sbjct: 204 GYNMEGLLYFSEMWRSKVGYDSHTF-----AIALKASADSSLLHHGKAIHTQTIKQGFDE 258
Query: 151 NISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMG 210
+ + +L Y K + +F +++ + V WT I + G FK M
Sbjct: 259 SSFVINTLATMYNKCGKPDYVMRLFEKMRMPDVVSWTTLISTYVQMGEEEHAVEAFKRMR 318
Query: 211 RERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLL 270
+ + N YTF++V+ +C + G Q+H +++++GL + V ++ +Y KC LL
Sbjct: 319 KSYVSPNKYTFAAVISSCANL-AAAKWGEQIHGHVLRLGLVNALSVANSIITLYSKCGLL 377
Query: 271 RDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIA 330
+ A VF I +K+I SW+ ++ Y + G EA +L M+ G + E ++ +
Sbjct: 378 KSASLVFHGIT-RKDIISWSTIISVYSQGGYAKEAFDYLSWMRREGPKPNEFALSSVLSV 436
Query: 331 CSSIS 335
C S++
Sbjct: 437 CGSMA 441
>gi|449508637|ref|XP_004163369.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g56570-like [Cucumis sativus]
Length = 594
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 83/278 (29%), Positives = 138/278 (49%), Gaps = 11/278 (3%)
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AW 118
G A LF+E+P RD +W MIVG+ Y + T+F+EM++ + V P A+
Sbjct: 57 GLTREACNLFNEIPERDVVTWTAMIVGFTSCNHYHQAWTMFSEMLRSE------VQPNAF 110
Query: 119 IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF-RCLEDADFVFSQ 177
+ VLKAC + G H L K G R++ + +L++ Y ++DA VF+
Sbjct: 111 TMSSVLKACKGMKALSCGALAHSLATKHGIDRSVYVQNALLDMYAASCATMDDALSVFND 170
Query: 178 LKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC 237
+ V WT I G + F++M E + NS++FS +AC + +C
Sbjct: 171 IPLKTAVSWTTLIAGFTHRGDGYSGLLAFRQMLLEDVGPNSFSFSIAARACASISSY-SC 229
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYI 297
G+Q+HA + K GL D V ++DMY +C L DA+R F + + KN+ +WN ++ GY
Sbjct: 230 GKQIHAAVTKYGLHCDAPVMNSILDMYCRCNYLCDAKRCFGELTE-KNLITWNTLIAGYE 288
Query: 298 RNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
R+ E+ + M + G + + AC++++
Sbjct: 289 RSD-SSESLSLFFQMGSEGYKPNCFTFTSITAACANLA 325
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 89/321 (27%), Positives = 149/321 (46%), Gaps = 12/321 (3%)
Query: 14 TCLIKECTFQKD-SAGAFELLNHIRKRVNIKPTLLFLNRLLLMHV-SCGQLDTARQLFDE 71
+ ++K C K S GA L + + + I ++ N LL M+ SC +D A +F++
Sbjct: 113 SSVLKACKGMKALSCGA--LAHSLATKHGIDRSVYVQNALLDMYAASCATMDDALSVFND 170
Query: 72 MPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTM 131
+PL+ SW +I G+ D + F +M+ G F +AC
Sbjct: 171 IPLKTAVSWTTLIAGFTHRGDGYSGLLAFRQMLLEDVGPNSFSFS-----IAARACASIS 225
Query: 132 NMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIV 191
+ GKQ+H + K G + + S+++ Y + L DA F +L N + W I
Sbjct: 226 SYSCGKQIHAAVTKYGLHCDAPVMNSILDMYCRCNYLCDAKRCFGELTEKNLITWNTLIA 285
Query: 192 NNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLE 251
R + + F +MG E K N +TF+S+ AC + +CG+Q+H IV+ G +
Sbjct: 286 GYERSDS-SESLSLFFQMGSEGYKPNCFTFTSITAACANLAVL-SCGQQVHGGIVRRGFD 343
Query: 252 SDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYL 311
+ + L+DMY KC + D+ ++F + +++ SW M++GY +G EA K
Sbjct: 344 KNVALINSLIDMYAKCGSISDSHKLF-CDMPGRDLVSWTTMMIGYGAHGYGKEAVKLFDE 402
Query: 312 MKASGIQIQESLINDLRIACS 332
M SGIQ + + CS
Sbjct: 403 MVQSGIQPDRIVFMGVLCGCS 423
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 115/247 (46%), Gaps = 10/247 (4%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
+N +L M+ C L A++ F E+ ++ +W +I GY + +D E ++LF +M
Sbjct: 249 MNSILDMYCRCNYLCDAKRCFGELTEKNLITWNTLIAGY-ERSDSSESLSLFFQMGSEGY 307
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
F + + AC + G+QVHG + + G +N++L SLI+ Y K +
Sbjct: 308 KPNCFTFTS-----ITAACANLAVLSCGQQVHGGIVRRGFDKNVALINSLIDMYAKCGSI 362
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
D+ +F + + V WT ++ G+ + F EM + I+ + F VL C
Sbjct: 363 SDSHKLFCDMPGRDLVSWTTMMIGYGAHGYGKEAVKLFDEMVQSGIQPDRIVFMGVLCGC 422
Query: 229 --GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
G+ D G + + + + D+ + +VD+ G+ + +A ++ E + + +
Sbjct: 423 SHAGLVDKGL--KYFRSMLEDYNINPDQEIYRCVVDLLGRAGRVEEAFQLVENMPFEPDE 480
Query: 287 ASWNAML 293
+ W A+L
Sbjct: 481 SVWGALL 487
>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 741
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 91/287 (31%), Positives = 143/287 (49%), Gaps = 17/287 (5%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ + S G +++A++LFDE+P++D SW MI GY + +Y+E + LF EMMK
Sbjct: 206 LIKGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMKTN---- 261
Query: 112 LLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
+ P +V V+ AC + ++ELG+QVH + G N+ + SL++ Y K LE
Sbjct: 262 --IRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNSLMDLYSKCGELET 319
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC-- 228
A +F L + + W I + + F+EM R + N T S+L AC
Sbjct: 320 ACGLFEGLLYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGERPNDVTMLSILPACAH 379
Query: 229 -GGVDDDGNCGRQMHANIVK--IGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
G +D GR +H I K + ++ L+DMY KC + A +VF I+ K+
Sbjct: 380 LGAID----IGRWIHVYIDKRLKSATNASSLRTSLIDMYAKCGDIEAAHQVFNSIL-HKS 434
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
++SWNAM+ G+ +G A M+ GI+ + L ACS
Sbjct: 435 LSSWNAMIFGFAMHGRADAAFDIFSRMRKIGIEPDDITFVGLLSACS 481
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 78/312 (25%), Positives = 135/312 (43%), Gaps = 44/312 (14%)
Query: 62 LDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIV 121
L A +F+ + + W M G+ +D + L+ M+ + L+ ++
Sbjct: 84 LPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMIS-----LGLLPNSYTFP 138
Query: 122 CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFV------- 174
+LK+C + + G+Q+HG + KLG ++ + SLI+ Y + LEDA V
Sbjct: 139 FLLKSCAKSKAFKEGQQIHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHR 198
Query: 175 ------------------------FSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMG 210
F ++ + V W A I G++ + FKEM
Sbjct: 199 DVVSYTALIKGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMM 258
Query: 211 RERIKKNSYTFSSVLKAC---GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKC 267
+ I+ + T +V+ AC G ++ GRQ+H+ I G S+ + L+D+Y KC
Sbjct: 259 KTNIRPDESTMVTVVSACAQSGSIE----LGRQVHSWIDDHGFGSNLKIVNSLMDLYSKC 314
Query: 268 RLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDL 327
L A +FE ++ K++ SWN ++ GY LY EA M SG + + + +
Sbjct: 315 GELETACGLFEGLL-YKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGERPNDVTMLSI 373
Query: 328 RIACSSISASKI 339
AC+ + A I
Sbjct: 374 LPACAHLGAIDI 385
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/274 (26%), Positives = 129/274 (47%), Gaps = 14/274 (5%)
Query: 27 AGAFELLNHIRKRVN---IKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVM 83
+G+ EL + ++ L +N L+ ++ CG+L+TA LF+ + +D SW +
Sbjct: 279 SGSIELGRQVHSWIDDHGFGSNLKIVNSLMDLYSKCGELETACGLFEGLLYKDVISWNTL 338
Query: 84 IVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLL 143
I GY + Y+E + LF EM++ + + ++ +L AC +++G+ +H +
Sbjct: 339 IGGYTHMNLYKEALLLFQEMLRSGERPNDVT-----MLSILPACAHLGAIDIGRWIHVYI 393
Query: 144 FK-LGSSRNI-SLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQ 201
K L S+ N SL SLI+ Y K +E A VF+ + + W A I G
Sbjct: 394 DKRLKSATNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADA 453
Query: 202 VFNDFKEMGRERIKKNSYTFSSVLKAC--GGVDDDGNCGRQMHANIVKIGLESDEYVQCG 259
F+ F M + I+ + TF +L AC G+ D G + KI + + Y C
Sbjct: 454 AFDIFSRMRKIGIEPDDITFVGLLSACSRSGMLDLGRHIFRTMTQDYKITPKLEHY-GC- 511
Query: 260 LVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
++D+ G L ++AE + + + + W ++L
Sbjct: 512 MIDLLGHSGLFKEAEEMINNMEMEPDGVIWCSLL 545
>gi|334186228|ref|NP_191896.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332646951|gb|AEE80472.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 884
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 86/287 (29%), Positives = 141/287 (49%), Gaps = 9/287 (3%)
Query: 51 RLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGH 110
+L+ M+ CG LD A ++FDEMP R +W MI YV + + L+ M
Sbjct: 121 KLVFMYGKCGSLDDAEKVFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPL 180
Query: 111 MLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
L FPA +LKAC ++ G ++H LL KLG + +L++ Y K L
Sbjct: 181 GLSSFPA-----LLKACAKLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSA 235
Query: 171 ADFVFSQLK-RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A +F + + + V+W + + + G + F+EM NSYT S L AC
Sbjct: 236 ARRLFDGFQEKGDAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACD 295
Query: 230 GVDDDGNCGRQMHANIVKIGLESDE-YVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
G G+++HA+++K S E YV L+ MY +C + AER+ + + ++ +
Sbjct: 296 GF-SYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQM-NNADVVT 353
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
WN+++ GY++N +Y EA +F M A+G + E + + A +S
Sbjct: 354 WNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLS 400
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 83/330 (25%), Positives = 149/330 (45%), Gaps = 12/330 (3%)
Query: 6 LPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTA 65
+P+ + L+K C +D EL + + ++ T +N L+ M+ L A
Sbjct: 178 VPLGLSSFPALLKACAKLRDIRSGSEL-HSLLVKLGYHSTGFIVNALVSMYAKNDDLSAA 236
Query: 66 RQLFDEMPLR-DFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCV 123
R+LFD + D W ++ Y E + LF EM HM P ++ IV
Sbjct: 237 RRLFDGFQEKGDAVLWNSILSSYSTSGKSLETLELFREM------HMTGPAPNSYTIVSA 290
Query: 124 LKACVCTMNMELGKQVHGLLFKLGS-SRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
L AC +LGK++H + K + S + + +LI Y + + A+ + Q+ +
Sbjct: 291 LTACDGFSYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNAD 350
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
V W + I + + + F +M K + + +S++ A G + + G ++H
Sbjct: 351 VVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNL-LAGMELH 409
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
A ++K G +S+ V L+DMY KC L R F L + K++ SW ++ GY +N +
Sbjct: 410 AYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAF-LRMHDKDLISWTTVIAGYAQNDCH 468
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIACS 332
VEA + + ++I E ++ + A S
Sbjct: 469 VEALELFRDVAKKRMEIDEMILGSILRASS 498
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 73/288 (25%), Positives = 132/288 (45%), Gaps = 8/288 (2%)
Query: 31 ELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDV 90
E+ + K L N L+ M+ CG++ A ++ +M D +W +I GYV
Sbjct: 305 EIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQN 364
Query: 91 ADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSR 150
Y+E + F++M+ GH + ++ A N+ G ++H + K G
Sbjct: 365 LMYKEALEFFSDMI--AAGHKSDEVS---MTSIIAASGRLSNLLAGMELHAYVIKHGWDS 419
Query: 151 NISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMG 210
N+ + +LI+ Y K F ++ + + WT I + + F+++
Sbjct: 420 NLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVA 479
Query: 211 RERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLL 270
++R++ + S+L+A V +++H +I++ GL D +Q LVD+YGKCR +
Sbjct: 480 KKRMEIDEMILGSILRA-SSVLKSMLIVKEIHCHILRKGL-LDTVIQNELVDVYGKCRNM 537
Query: 271 RDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
A RVFE I K++ SW +M+ NG EA + M +G+
Sbjct: 538 GYATRVFESI-KGKDVVSWTSMISSSALNGNESEAVELFRRMVETGLS 584
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 97/225 (43%), Gaps = 2/225 (0%)
Query: 116 PAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNIS-LTGSLINFYGKFRCLEDADFV 174
P VL+ C + G+Q+H +FK S + L G L+ YGK L+DA+ V
Sbjct: 79 PVEAFAYVLELCGKRRAVSQGRQLHSRIFKTFPSFELDFLAGKLVFMYGKCGSLDDAEKV 138
Query: 175 FSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDD 234
F ++ W I G + M E + +F ++LKAC + D
Sbjct: 139 FDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDI 198
Query: 235 GNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLV 294
G ++H+ +VK+G S ++ LV MY K L A R+F+ +K + WN++L
Sbjct: 199 -RSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILS 257
Query: 295 GYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKI 339
Y +G +E + M +G I AC S +K+
Sbjct: 258 SYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKL 302
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/248 (21%), Positives = 110/248 (44%), Gaps = 9/248 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ ++ C + A ++F+ + +D SW MI + E + LF M++
Sbjct: 525 NELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRMVETG-- 582
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
L + ++C+L A + G+++H L + G S+ ++++ Y L+
Sbjct: 583 ---LSADSVALLCILSAAASLSALNKGREIHCYLLRKGFCLEGSIAVAVVDMYACCGDLQ 639
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC- 228
A VF +++R + +T+ I G F +M E + + +F ++L AC
Sbjct: 640 SAKAVFDRIERKGLLQYTSMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLALLYACS 699
Query: 229 -GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
G+ D+G ++ + ++ + YV C LVDM G+ + +A +++ +
Sbjct: 700 HAGLLDEGRGFLKIMEHEYELEPWPEHYV-C-LVDMLGRANCVVEAFEFVKMMKTEPTAE 757
Query: 288 SWNAMLVG 295
W A+L
Sbjct: 758 VWCALLAA 765
>gi|449435950|ref|XP_004135757.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g56570-like [Cucumis sativus]
Length = 606
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 86/294 (29%), Positives = 145/294 (49%), Gaps = 12/294 (4%)
Query: 44 PTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEM 103
P++ N L+ + G A LF+E+P RD +W MIVG+ Y + T+F+EM
Sbjct: 42 PSVWATN-LIKSYFDKGLTREACNLFNEIPERDVVTWTAMIVGFTSCNHYHQAWTMFSEM 100
Query: 104 MKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFY 162
++ + V P A+ + VLKAC + G H L K G R++ + +L++ Y
Sbjct: 101 LRSE------VQPNAFTMSSVLKACKGMKALSCGALAHSLATKHGIDRSVYVQNALLDMY 154
Query: 163 GKF-RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTF 221
++DA VF+ + V WT I G + F++M E + NS++F
Sbjct: 155 AASCATMDDALSVFNDIPLKTAVSWTTLIAGFTHRGDGYSGLLAFRQMLLEDVGPNSFSF 214
Query: 222 SSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIV 281
S +AC + +CG+Q+HA + K GL D V ++DMY +C L DA+R F +
Sbjct: 215 SIAARACASISSY-SCGKQIHAAVTKYGLHCDAPVMNSILDMYCRCNYLCDAKRCFGELT 273
Query: 282 DKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
+ KN+ +WN ++ GY R+ E+ + M + G + + AC++++
Sbjct: 274 E-KNLITWNTLIAGYERSD-SSESLSLFFQMGSEGYKPNCFTFTSITAACANLA 325
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 89/321 (27%), Positives = 149/321 (46%), Gaps = 12/321 (3%)
Query: 14 TCLIKECTFQKD-SAGAFELLNHIRKRVNIKPTLLFLNRLLLMHV-SCGQLDTARQLFDE 71
+ ++K C K S GA L + + + I ++ N LL M+ SC +D A +F++
Sbjct: 113 SSVLKACKGMKALSCGA--LAHSLATKHGIDRSVYVQNALLDMYAASCATMDDALSVFND 170
Query: 72 MPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTM 131
+PL+ SW +I G+ D + F +M+ G F +AC
Sbjct: 171 IPLKTAVSWTTLIAGFTHRGDGYSGLLAFRQMLLEDVGPNSFSFS-----IAARACASIS 225
Query: 132 NMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIV 191
+ GKQ+H + K G + + S+++ Y + L DA F +L N + W I
Sbjct: 226 SYSCGKQIHAAVTKYGLHCDAPVMNSILDMYCRCNYLCDAKRCFGELTEKNLITWNTLIA 285
Query: 192 NNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLE 251
R + + F +MG E K N +TF+S+ AC + +CG+Q+H IV+ G +
Sbjct: 286 GYERSDS-SESLSLFFQMGSEGYKPNCFTFTSITAACANLAVL-SCGQQVHGGIVRRGFD 343
Query: 252 SDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYL 311
+ + L+DMY KC + D+ ++F + +++ SW M++GY +G EA K
Sbjct: 344 KNVALINSLIDMYAKCGSISDSHKLF-CDMPGRDLVSWTTMMIGYGAHGYGKEAVKLFDE 402
Query: 312 MKASGIQIQESLINDLRIACS 332
M SGIQ + + CS
Sbjct: 403 MVQSGIQPDRIVFMGVLCGCS 423
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 115/247 (46%), Gaps = 10/247 (4%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
+N +L M+ C L A++ F E+ ++ +W +I GY + +D E ++LF +M
Sbjct: 249 MNSILDMYCRCNYLCDAKRCFGELTEKNLITWNTLIAGY-ERSDSSESLSLFFQMGSEGY 307
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
F + + AC + G+QVHG + + G +N++L SLI+ Y K +
Sbjct: 308 KPNCFTFTS-----ITAACANLAVLSCGQQVHGGIVRRGFDKNVALINSLIDMYAKCGSI 362
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
D+ +F + + V WT ++ G+ + F EM + I+ + F VL C
Sbjct: 363 SDSHKLFCDMPGRDLVSWTTMMIGYGAHGYGKEAVKLFDEMVQSGIQPDRIVFMGVLCGC 422
Query: 229 --GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
G+ D G + + + + D+ + +VD+ G+ + +A ++ E + + +
Sbjct: 423 SHAGLVDKGL--KYFRSMLEDYNINPDQEIYRCVVDLLGRAGRVEEAFQLVENMPFEPDE 480
Query: 287 ASWNAML 293
+ W A+L
Sbjct: 481 SVWGALL 487
>gi|302762388|ref|XP_002964616.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
gi|300168345|gb|EFJ34949.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
Length = 795
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 93/319 (29%), Positives = 150/319 (47%), Gaps = 35/319 (10%)
Query: 12 MYTCLIKECTFQKDSAGAFELLNHIRKRVN----IKPTLLFLNRLLLMHVSCGQLDTARQ 67
+YT ++ C S A E I R++ +K ++ N LL M+ CG L+ A++
Sbjct: 123 VYTTVLGACA----SIKALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSLEDAKR 178
Query: 68 LFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPA-WIIVCVLKA 126
LF+ M R +SW MI Y ++E I L+ +M V P+ VL A
Sbjct: 179 LFERMSGRSVSSWNAMIAAYAQSGHFEEAIRLYEDMD---------VEPSVRTFTSVLSA 229
Query: 127 CVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVW 186
C ++ G+++H L+ G+ ++SL +L+ Y + +CL+DA +F +L R + V W
Sbjct: 230 CSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVSW 289
Query: 187 TAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIV 246
+A I F + + +M E ++ N YTF+SVL AC V D GR +H I+
Sbjct: 290 SAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDL-RAGRAVHDQIL 348
Query: 247 KIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG------ 300
G + LVD+Y L +A +F+ I + ++ W ++ GY + G
Sbjct: 349 GNGYKITLVNGTALVDLYTSYGSLDEARSLFDQI-ENRDEGLWTVLIGGYSKQGHRTGVL 407
Query: 301 -LY--------VEATKFLY 310
LY V ATK +Y
Sbjct: 408 ELYREMKNTTKVPATKIIY 426
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 86/310 (27%), Positives = 150/310 (48%), Gaps = 20/310 (6%)
Query: 30 FELLNHIRKRVNIKPTL-LFL-NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGY 87
E + I R++ + +FL N ++ + CG + +AR FD + ++ SW M+ Y
Sbjct: 40 LESVRQIHDRISGAASANVFLGNEIVRAYGKCGSVASARAAFDAIARKNDYSWGSMLTAY 99
Query: 88 VDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKL- 146
Y+ + L+ M L P + VL AC +E GK +H +
Sbjct: 100 AQNGHYRAALDLYKRM-------DLQPNPV-VYTTVLGACASIKALEEGKAIHSRISGTK 151
Query: 147 GSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDF 206
G ++ L SL+ Y K LEDA +F ++ + W A I + GHF + +
Sbjct: 152 GLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRSVSSWNAMIAAYAQSGHFEEAIRLY 211
Query: 207 KEMGRERIKKNSYTFSSVLKACG--GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMY 264
++M ++ + TF+SVL AC G+ D GR++HA I G E D +Q L+ MY
Sbjct: 212 EDMD---VEPSVRTFTSVLSACSNLGLLDQ---GRKIHALISSRGTELDLSLQNALLTMY 265
Query: 265 GKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLI 324
+C+ L DA ++F+ + ++++ SW+AM+ + L+ EA +F M+ G++
Sbjct: 266 ARCKCLDDAAKIFQRL-PRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTF 324
Query: 325 NDLRIACSSI 334
+ +AC+S+
Sbjct: 325 ASVLLACASV 334
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/291 (26%), Positives = 137/291 (47%), Gaps = 14/291 (4%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L N LL M+ C LD A ++F +P RD SW+ MI + + + E I +++M
Sbjct: 255 LSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKM-- 312
Query: 106 RKKGHMLLVFPAW-IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTG--SLINFY 162
+ V P + VL AC ++ G+ VH + LG+ I+L +L++ Y
Sbjct: 313 ----QLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQI--LGNGYKITLVNGTALVDLY 366
Query: 163 GKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEM-GRERIKKNSYTF 221
+ L++A +F Q++ + +WT I ++GH V ++EM ++ +
Sbjct: 367 TSYGSLDEARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVLELYREMKNTTKVPATKIIY 426
Query: 222 SSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIV 281
S V+ AC + + RQ H++I G+ SD + LV+MY + L A +VF+ +
Sbjct: 427 SCVISACASLGAFADA-RQAHSDIEADGMISDFVLATSLVNMYSRWGNLESARQVFDKMS 485
Query: 282 DKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+ +A W ++ GY ++G + A M+ G + E + ACS
Sbjct: 486 SRDTLA-WTTLIAGYAKHGEHGLALGLYKEMELEGAEPSELTFMVVLYACS 535
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 114/260 (43%), Gaps = 22/260 (8%)
Query: 43 KPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAE 102
K TL+ L+ ++ S G LD AR LFD++ RD W V+I GY + L+ E
Sbjct: 353 KITLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVLELYRE 412
Query: 103 MMKRKKGHMLLVFPAWIIV--CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLIN 160
M K PA I+ CV+ AC +Q H + G + L SL+N
Sbjct: 413 MKNTTK------VPATKIIYSCVISACASLGAFADARQAHSDIEADGMISDFVLATSLVN 466
Query: 161 FYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYT 220
Y ++ LE A VF ++ +T+ WT I + G +KEM E + + T
Sbjct: 467 MYSRWGNLESARQVFDKMSSRDTLAWTTLIAGYAKHGEHGLALGLYKEMELEGAEPSELT 526
Query: 221 FSSVLKACGGVDDDGNCGRQMHANIVKIGLESD-------EYVQCGLVDMYGKCRLLRDA 273
F VL AC + G Q + I ++SD + C ++D+ + L DA
Sbjct: 527 FMVVLYAC------SHAGLQEQGKQLFISIQSDYAMHPNIAHYSC-IIDLLSRAGRLSDA 579
Query: 274 ERVFELIVDKKNIASWNAML 293
E + + + N +W+++L
Sbjct: 580 EELINAMPVEPNDVTWSSLL 599
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 91/178 (51%), Gaps = 7/178 (3%)
Query: 132 NMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIV 191
++E +Q+H + S+ N+ L ++ YGK + A F + R N W + +
Sbjct: 39 DLESVRQIHDRISGAASA-NVFLGNEIVRAYGKCGSVASARAAFDAIARKNDYSWGSMLT 97
Query: 192 NNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKI-GL 250
+ GH+ + +K M ++ N +++VL AC + G+ +H+ I GL
Sbjct: 98 AYAQNGHYRAALDLYKRMD---LQPNPVVYTTVLGACASIKALEE-GKAIHSRISGTKGL 153
Query: 251 ESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKF 308
+ D ++ L+ MY KC L DA+R+FE + ++++SWNAM+ Y ++G + EA +
Sbjct: 154 KLDVILENSLLTMYAKCGSLEDAKRLFERM-SGRSVSSWNAMIAAYAQSGHFEEAIRL 210
>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 776
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 91/320 (28%), Positives = 155/320 (48%), Gaps = 20/320 (6%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
+ CL+ +K A + + ++ R ++ N ++ + G++D ARQLFDE
Sbjct: 217 WNCLLGGFVKKKKIVEARQFFDSMKVR-----DVVSWNTIITGYAQNGEIDEARQLFDES 271
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN 132
P+ D +W M+ GY+ +E LF M +R + +W +L V
Sbjct: 272 PVHDVFTWTAMVSGYIQNRMVEEARELFDRMPERNE-------VSW--NAMLAGYVQGER 322
Query: 133 MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192
+E+ K+ LF + RN+S ++I Y + + +A +F ++ + + V W A I
Sbjct: 323 VEMAKE----LFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAG 378
Query: 193 NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLES 252
+ GH ++ F M RE + N +FSS L C V G+Q+H +VK G E+
Sbjct: 379 YSQSGHSYEALRLFVLMEREGGRLNRSSFSSALSTCADVVAL-ELGKQLHGRLVKGGYET 437
Query: 253 DEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLM 312
+V L+ MY KC + +A +F+ + K+I SWN M+ GY R+G EA +F M
Sbjct: 438 GCFVGNALLLMYCKCGSIEEANDLFKEMAG-KDIVSWNTMIAGYSRHGFGEEALRFFESM 496
Query: 313 KASGIQIQESLINDLRIACS 332
K G++ ++ + + ACS
Sbjct: 497 KREGLKPDDATMVAVLSACS 516
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/248 (29%), Positives = 116/248 (46%), Gaps = 13/248 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N ++ + CG++ A+ LFD+MP RD SWA MI GY E + LF +M+R+ G
Sbjct: 342 NTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFV-LMEREGG 400
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ L C + +ELGKQ+HG L K G + +L+ Y K +E
Sbjct: 401 RLNRS----SFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIE 456
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC- 228
+A+ +F ++ + V W I R G + F+ M RE +K + T +VL AC
Sbjct: 457 EANDLFKEMAGKDIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATMVAVLSACS 516
Query: 229 --GGVDDDGNCGRQ-MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
G VD GRQ H G+ + +VD+ G+ LL +A + + + + +
Sbjct: 517 HTGLVDK----GRQYFHTMTQDYGVRPNSQHYACMVDLLGRAGLLEEAHNLMKNMPFEPD 572
Query: 286 IASWNAML 293
A W +L
Sbjct: 573 AAIWGTLL 580
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 65/334 (19%), Positives = 139/334 (41%), Gaps = 48/334 (14%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
+ +IK ++ A EL + +R + N +L + G +D AR++FD M
Sbjct: 124 WNVMIKGYVRNRNLGKARELFERMPER-----DVCSWNTILSGYAQNGCVDDARRVFDRM 178
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIV---CVLKACVC 129
P ++ SW ++ YV + +E LF W +V C+L V
Sbjct: 179 PEKNDVSWNALLSAYVQNSKLEEACVLFGSREN------------WALVSWNCLLGGFVK 226
Query: 130 TMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAK 189
+ +Q F R++ ++I Y + +++A +F + H+ WTA
Sbjct: 227 KKKIVEARQ----FFDSMKVRDVVSWNTIITGYAQNGEIDEARQLFDESPVHDVFTWTAM 282
Query: 190 IVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIG 249
+ + +++ + +E+ ++N +++++L + V++
Sbjct: 283 VSGYIQ----NRMVEEARELFDRMPERNEVSWNAMLAG------------YVQGERVEMA 326
Query: 250 LESDEYVQC-------GLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
E + + C ++ Y +C + +A+ +F+ + K++ SW AM+ GY ++G
Sbjct: 327 KELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKM-PKRDPVSWAAMIAGYSQSGHS 385
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
EA + LM+ G ++ S + C+ + A
Sbjct: 386 YEALRLFVLMEREGGRLNRSSFSSALSTCADVVA 419
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 80/306 (26%), Positives = 126/306 (41%), Gaps = 58/306 (18%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N ++ ++ G+ + AR LFDEMP RD SW VMI GYV + + LF M +R
Sbjct: 94 NAMISGYLRNGEFELARMLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFERMPERD-- 151
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMEL-GKQVHG------LLFKLGSSRNISLTGSLINFY 162
VC+ N L G +G +F +N +L++ Y
Sbjct: 152 ------------------VCSWNTILSGYAQNGCVDDARRVFDRMPEKNDVSWNALLSAY 193
Query: 163 GKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHF---------HQVFNDFKEMGRER 213
+ LE+A +F + V W NC G F Q F+ K R+
Sbjct: 194 VQNSKLEEACVLFGSRENWALVSW------NCLLGGFVKKKKIVEARQFFDSMKV--RDV 245
Query: 214 IKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDA 273
+ N T + G +D+ RQ+ D + +V Y + R++ +A
Sbjct: 246 VSWN--TIITGYAQNGEIDE----ARQLFDE----SPVHDVFTWTAMVSGYIQNRMVEEA 295
Query: 274 ERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLY-LMKASGIQIQESLINDLRIACS 332
+F+ + + +N SWNAML GY++ G VE K L+ +M + ++I C
Sbjct: 296 RELFDRMPE-RNEVSWNAMLAGYVQ-GERVEMAKELFDVMPCRNVSTWNTMITGY-AQCG 352
Query: 333 SISASK 338
IS +K
Sbjct: 353 KISEAK 358
>gi|302798571|ref|XP_002981045.1| hypothetical protein SELMODRAFT_334 [Selaginella moellendorffii]
gi|300151099|gb|EFJ17746.1| hypothetical protein SELMODRAFT_334 [Selaginella moellendorffii]
Length = 833
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 88/303 (29%), Positives = 140/303 (46%), Gaps = 9/303 (2%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
Y L++ C + H+++ + + +L F NRL+ M+ C LD AR++FD M
Sbjct: 1 YARLMRACGISGALEQGRRVHGHVQRHADDR-SLFFGNRLVNMYRRCSSLDEARKVFDRM 59
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN 132
RD SW MI Y ++ + LF EM + F A +L+AC
Sbjct: 60 RERDVVSWTAMISAYAQTGHQRQALDLFTEMAGSSLDPNRVTFLA-----LLEACDSPEF 114
Query: 133 MELGKQVHGLLFKLG-SSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIV 191
+E GKQ+H + L ++ + +++ Y K + A VFS+++ + + W I
Sbjct: 115 LEDGKQIHARVSALQLLESDVPVANAVMGMYRKCERADLAMAVFSEMRERDLISWNNAIA 174
Query: 192 NNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLE 251
N G + K M E + + TF S L AC G N GR +HA +++ G+E
Sbjct: 175 ANAESGDYTFTLALLKSMQLEGMAPDKVTFVSALNACIGSRSLSN-GRLIHALVLERGME 233
Query: 252 SDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYL 311
D + LV MYG+C L A +F + ++N+ SWNAM+ N + EA +
Sbjct: 234 GDVVLGTALVTMYGRCGCLESAREIFHRM-PERNVVSWNAMVASCTLNAHFAEAIELFKR 292
Query: 312 MKA 314
M A
Sbjct: 293 MVA 295
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 87/307 (28%), Positives = 142/307 (46%), Gaps = 16/307 (5%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVN----IKPTLLFLNRLLLMHVSCGQLDTARQL 68
+ L++ C DS E I RV+ ++ + N ++ M+ C + D A +
Sbjct: 102 FLALLEAC----DSPEFLEDGKQIHARVSALQLLESDVPVANAVMGMYRKCERADLAMAV 157
Query: 69 FDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACV 128
F EM RD SW I + DY + L M + F V L AC+
Sbjct: 158 FSEMRERDLISWNNAIAANAESGDYTFTLALLKSMQLEGMAPDKVTF-----VSALNACI 212
Query: 129 CTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTA 188
+ ++ G+ +H L+ + G ++ L +L+ YG+ CLE A +F ++ N V W A
Sbjct: 213 GSRSLSNGRLIHALVLERGMEGDVVLGTALVTMYGRCGCLESAREIFHRMPERNVVSWNA 272
Query: 189 KIVNNCREGHFHQVFNDFKEM-GRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVK 247
+ + HF + FK M ++ +F +VL A + GR++HA I +
Sbjct: 273 MVASCTLNAHFAEAIELFKRMVAVAMVEPTRVSFITVLNAVTTPEALAE-GRRIHAMIQE 331
Query: 248 IGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATK 307
L S V LV MYG+C + DAERVF + +++++ SWNAM+ Y ++GL E
Sbjct: 332 RQLLSQIEVANALVTMYGRCGGVGDAERVFSAM-ERRDLVSWNAMISAYAQSGLAREVVN 390
Query: 308 FLYLMKA 314
+ M+A
Sbjct: 391 LFHRMRA 397
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 74/255 (29%), Positives = 119/255 (46%), Gaps = 13/255 (5%)
Query: 68 LFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKAC 127
+F+ M RD SW MI GYV D +++F M+ + F + + VC +A
Sbjct: 469 IFESMAARDVISWNTMITGYVQAGDSFSALSIFKRMLLEGIRGNQVTFMSLLSVCDSRAF 528
Query: 128 VCTMNMELGKQVHGLLFKLGS--SRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVV 185
+ G+ +H + S + + +++N YGK L+ A +F N
Sbjct: 529 -----LRQGETIHRRVINQTPELSSDPIVAAAIVNMYGKCGELDTARHLFEDTSHRNLAS 583
Query: 186 WTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--GGVDDDGNCGRQMHA 243
W + I G Q F+ + M RE + + TF ++L AC GG G+ +HA
Sbjct: 584 WNSMISAYALHGRAEQAFDLSERMRREGVLPDRVTFITLLNACVAGGAV---RHGKMIHA 640
Query: 244 NIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYV 303
I+ GLE D V LV+ Y KC L A +F + D +++ SWN ++ G+ NG
Sbjct: 641 RIIDSGLEKDTVVANALVNFYSKCGNLDTATSLFGAL-DYRDVVSWNGIIAGFAHNGHAR 699
Query: 304 EATKFLYLMKASGIQ 318
EA K ++LM+ G++
Sbjct: 700 EALKSMWLMQQDGVR 714
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 79/291 (27%), Positives = 130/291 (44%), Gaps = 16/291 (5%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ CG L++AR++F MP R+ SW M+ A + E I LF M+ +
Sbjct: 242 LVTMYGRCGCLESAREIFHRMPERNVVSWNAMVASCTLNAHFAEAIELFKRMVA-----V 296
Query: 112 LLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
+V P + + VL A + G+++H ++ + I + +L+ YG+ + D
Sbjct: 297 AMVEPTRVSFITVLNAVTTPEALAEGRRIHAMIQERQLLSQIEVANALVTMYGRCGGVGD 356
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
A+ VFS ++R + V W A I + G +V N F M ER+ + TF L AC
Sbjct: 357 AERVFSAMERRDLVSWNAMISAYAQSGLAREVVNLFHRMRAERVPPDRITFLMALDACAE 416
Query: 231 VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMY--------GKCRLLRDAERVFELIVD 282
+ D + GR +H V+ G S V + +Y L+ +FE +
Sbjct: 417 IRDL-DSGRTVHHLSVESGFGSCISVANATMHLYSSCSSSSSSSSSLMEVVAGIFESMA- 474
Query: 283 KKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSS 333
+++ SWN M+ GY++ G A M GI+ + L C S
Sbjct: 475 ARDVISWNTMITGYVQAGDSFSALSIFKRMLLEGIRGNQVTFMSLLSVCDS 525
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 121/269 (44%), Gaps = 25/269 (9%)
Query: 37 RKRVNIKPTL----LFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVAD 92
R+ +N P L + ++ M+ CG+LDTAR LF++ R+ SW MI Y
Sbjct: 537 RRVINQTPELSSDPIVAAAIVNMYGKCGELDTARHLFEDTSHRNLASWNSMISAYALHGR 596
Query: 93 YQECITLFAEMMKRKKGHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRN 151
++ L +E M+R+ V P + + +L ACV + GK +H + G ++
Sbjct: 597 AEQAFDL-SERMRREG-----VLPDRVTFITLLNACVAGGAVRHGKMIHARIIDSGLEKD 650
Query: 152 ISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGR 211
+ +L+NFY K L+ A +F L + V W I GH + M +
Sbjct: 651 TVVANALVNFYSKCGNLDTATSLFGALDYRDVVSWNGIIAGFAHNGHAREALKSMWLMQQ 710
Query: 212 ERIKKNSYTFSSVLKACGGVDDDGNCG--RQMHANIVKIGLESD-----EYVQCGLVDMY 264
+ ++ ++ TF ++L A + G RQ + V + ++ + E+ C ++D+
Sbjct: 711 DGVRPDAITFLTILSA------SSHAGFLRQGGDDFVSMAVDHELERGVEHYGC-MIDLL 763
Query: 265 GKCRLLRDAERVFELIVDKKNIASWNAML 293
G+ + DAE + D+ SW +L
Sbjct: 764 GRAGRIGDAEYFVSAMRDEDKEVSWMTLL 792
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 99/198 (50%), Gaps = 7/198 (3%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
+++AC + +E G++VHG + + R++ L+N Y + L++A VF +++ +
Sbjct: 4 LMRACGISGALEQGRRVHGHVQRHADDRSLFFGNRLVNMYRRCSSLDEARKVFDRMRERD 63
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVD--DDGNCGRQ 240
V WTA I + GH Q + F EM + N TF ++L+AC + +D G+Q
Sbjct: 64 VVSWTAMISAYAQTGHQRQALDLFTEMAGSSLDPNRVTFLALLEACDSPEFLED---GKQ 120
Query: 241 MHANIVKIG-LESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRN 299
+HA + + LESD V ++ MY KC A VF + ++++ SWN + +
Sbjct: 121 IHARVSALQLLESDVPVANAVMGMYRKCERADLAMAVFSEM-RERDLISWNNAIAANAES 179
Query: 300 GLYVEATKFLYLMKASGI 317
G Y L M+ G+
Sbjct: 180 GDYTFTLALLKSMQLEGM 197
Score = 45.4 bits (106), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 55/113 (48%), Gaps = 2/113 (1%)
Query: 221 FSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELI 280
++ +++ACG + GR++H ++ + + + LV+MY +C L +A +VF+ +
Sbjct: 1 YARLMRACG-ISGALEQGRRVHGHVQRHADDRSLFFGNRLVNMYRRCSSLDEARKVFDRM 59
Query: 281 VDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSS 333
++++ SW AM+ Y + G +A M S + L AC S
Sbjct: 60 -RERDVVSWTAMISAYAQTGHQRQALDLFTEMAGSSLDPNRVTFLALLEACDS 111
>gi|225430410|ref|XP_002282982.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
[Vitis vinifera]
Length = 599
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 93/316 (29%), Positives = 158/316 (50%), Gaps = 13/316 (4%)
Query: 5 CLPITTDMYTC--LIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQL 62
C I D YT + K C Q E+ + + R+ + + LL ++ CG++
Sbjct: 98 CQNILGDKYTYPFVFKACASQFAVEKGKEV-HGVIVRIGYELDGFLQSSLLNFYMVCGEI 156
Query: 63 DTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIV 121
A+Q+FDE +D W +I GY + +F EM++ K+ V P ++
Sbjct: 157 GNAQQVFDEFDAKDVVFWNALITGYARQGMVLDSFGVFKEMVEVKE-----VRPNEGTMM 211
Query: 122 CVLKACVCTMNMELGKQVHGLLFK-LGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
++ AC+ + N++LG+ +HG + K + + L +LIN Y K L+ A +F ++
Sbjct: 212 GLIVACIESKNLKLGRAIHGYMMKDMVLREGVKLEAALINLYVKCGYLDGARKLFDEIPE 271
Query: 181 HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQ 240
NTVVW + I C+ G ++V +EM +K + +T S VL AC + N G
Sbjct: 272 KNTVVWNSLICGYCQIGSLNEVIELLREMHLSNLKPDRFTVSGVLSACAQMGAF-NLGNW 330
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
+H K G+ D ++ L+DMY KC + A +VF+ + +++N+A+WNA+L GY +G
Sbjct: 331 VHRFAEKKGI-WDVFIGTALIDMYAKCGFIGAARKVFDQM-NERNVATWNAILSGYASHG 388
Query: 301 LYVEATKFLYLMKASG 316
A + M+ SG
Sbjct: 389 QAESAIELFSEMRESG 404
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 73/245 (29%), Positives = 114/245 (46%), Gaps = 12/245 (4%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ ++V CG LD AR+LFDE+P ++ W +I GY + E I L EM H+
Sbjct: 249 LINLYVKCGYLDGARKLFDEIPEKNTVVWNSLICGYCQIGSLNEVIELLREM------HL 302
Query: 112 LLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
+ P + + VL AC LG VH K G ++ + +LI+ Y K +
Sbjct: 303 SNLKPDRFTVSGVLSACAQMGAFNLGNWVHRFAEKKGI-WDVFIGTALIDMYAKCGFIGA 361
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG- 229
A VF Q+ N W A + G F EM + +S TF +VL AC
Sbjct: 362 ARKVFDQMNERNVATWNAILSGYASHGQAESAIELFSEMRESGARPDSITFLAVLHACAH 421
Query: 230 -GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
G+ ++G + KI + Y C +VD+ G+ LL++A + +++V + N+
Sbjct: 422 SGLVENGKQYFDLMLQYYKIPPRVEHY-GC-MVDLLGRAGLLQEARELIKMMVVEPNVVV 479
Query: 289 WNAML 293
W A+L
Sbjct: 480 WGALL 484
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 75/295 (25%), Positives = 137/295 (46%), Gaps = 10/295 (3%)
Query: 45 TLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMM 104
T + +++ +S LD A Q+F++ D + MI Y I+++ +M
Sbjct: 37 TQFIITKIINSFLSHACLDYATQVFNQTQEPDGFIYNAMIRAYSSSQTPCVAISIYNKMR 96
Query: 105 KRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
+ ++ + V KAC +E GK+VHG++ ++G + L SL+NFY
Sbjct: 97 ACQN----ILGDKYTYPFVFKACASQFAVEKGKEVHGVIVRIGYELDGFLQSSLLNFYMV 152
Query: 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGR-ERIKKNSYTFSS 223
+ +A VF + + V W A I R+G F FKEM + ++ N T
Sbjct: 153 CGEIGNAQQVFDEFDAKDVVFWNALITGYARQGMVLDSFGVFKEMVEVKEVRPNEGTMMG 212
Query: 224 VLKACGGVDDDG-NCGRQMHANIVK-IGLESDEYVQCGLVDMYGKCRLLRDAERVFELIV 281
++ AC ++ GR +H ++K + L ++ L+++Y KC L A ++F+ I
Sbjct: 213 LIVAC--IESKNLKLGRAIHGYMMKDMVLREGVKLEAALINLYVKCGYLDGARKLFDEI- 269
Query: 282 DKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+KN WN+++ GY + G E + L M S ++ ++ + AC+ + A
Sbjct: 270 PEKNTVVWNSLICGYCQIGSLNEVIELLREMHLSNLKPDRFTVSGVLSACAQMGA 324
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 77/165 (46%), Gaps = 9/165 (5%)
Query: 28 GAFELLNHIRKRVNIKPTL-LFLNRLLL-MHVSCGQLDTARQLFDEMPLRDFNSWAVMIV 85
GAF L N + + K +F+ L+ M+ CG + AR++FD+M R+ +W ++
Sbjct: 323 GAFNLGNWVHRFAEKKGIWDVFIGTALIDMYAKCGFIGAARKVFDQMNERNVATWNAILS 382
Query: 86 GYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFK 145
GY + I LF+EM + + F A VL AC + +E GKQ L+ +
Sbjct: 383 GYASHGQAESAIELFSEMRESGARPDSITFLA-----VLHACAHSGLVENGKQYFDLMLQ 437
Query: 146 LGS-SRNISLTGSLINFYGKFRCLEDA-DFVFSQLKRHNTVVWTA 188
+ G +++ G+ L++A + + + N VVW A
Sbjct: 438 YYKIPPRVEHYGCMVDLLGRAGLLQEARELIKMMVVEPNVVVWGA 482
>gi|15226150|ref|NP_180924.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75101011|sp|P93005.1|PP181_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g33680
gi|1707007|gb|AAC69139.1| hypothetical protein [Arabidopsis thaliana]
gi|330253774|gb|AEC08868.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 727
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 88/284 (30%), Positives = 136/284 (47%), Gaps = 9/284 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ C L+ A ++FD R+ +W+ M+ GY + E + LF+ M
Sbjct: 260 NALVTMYSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQNGESLEAVKLFSRMFSAG-- 317
Query: 110 HMLLVFPA-WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+ P+ + IV VL AC +E GKQ+H L KLG R++ T +L++ Y K CL
Sbjct: 318 ----IKPSEYTIVGVLNACSDICYLEEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCL 373
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
DA F L+ + +WT+ I + + ++ M I N T +SVLKAC
Sbjct: 374 ADARKGFDCLQERDVALWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKAC 433
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
+ G+Q+H + +K G + + L MY KC L D VF + K++ S
Sbjct: 434 SSLATL-ELGKQVHGHTIKHGFGLEVPIGSALSTMYSKCGSLEDGNLVFRRTPN-KDVVS 491
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
WNAM+ G NG EA + M A G++ + ++ ACS
Sbjct: 492 WNAMISGLSHNGQGDEALELFEEMLAEGMEPDDVTFVNIISACS 535
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 77/288 (26%), Positives = 140/288 (48%), Gaps = 13/288 (4%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ G ++ ++F MP R+ +W+ M+ GY +E I +F ++ K+
Sbjct: 159 LVGMYCKAGLVEDGLKVFAYMPERNTYTWSTMVSGYATRGRVEEAIKVFNLFLREKEEGS 218
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
++ VL + T+ + LG+Q+H + K G ++L+ +L+ Y K L +A
Sbjct: 219 ---DSDYVFTAVLSSLAATIYVGLGRQIHCITIKNGLLGFVALSNALVTMYSKCESLNEA 275
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
+F N++ W+A + + G + F M IK + YT VL AC +
Sbjct: 276 CKMFDSSGDRNSITWSAMVTGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVLNACSDI 335
Query: 232 DDDGNC----GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
C G+Q+H+ ++K+G E + LVDMY K L DA + F+ + ++++A
Sbjct: 336 -----CYLEEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDCL-QERDVA 389
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
W +++ GY++N EA MK +GI + + + ACSS++
Sbjct: 390 LWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLA 437
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 86/302 (28%), Positives = 141/302 (46%), Gaps = 14/302 (4%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVD---VADYQE 95
R + N L+ + CG+L A +F+ + +D SW +I GY ++
Sbjct: 42 RTGASTCIQHANVLVNFYAKCGKLAKAHSIFNAIICKDVVSWNSLITGYSQNGGISSSYT 101
Query: 96 CITLFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISL 154
+ LF EM + + P A+ + + KA + +G+Q H L+ K+ S +I +
Sbjct: 102 VMQLFREMRAQD------ILPNAYTLAGIFKAESSLQSSTVGRQAHALVVKMSSFGDIYV 155
Query: 155 TGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERI 214
SL+ Y K +ED VF+ + NT W+ + G + F RE+
Sbjct: 156 DTSLVGMYCKAGLVEDGLKVFAYMPERNTYTWSTMVSGYATRGRVEEAIKVFNLFLREKE 215
Query: 215 K--KNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRD 272
+ + Y F++VL + G GRQ+H +K GL + LV MY KC L +
Sbjct: 216 EGSDSDYVFTAVLSSLAATIYVG-LGRQIHCITIKNGLLGFVALSNALVTMYSKCESLNE 274
Query: 273 AERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
A ++F+ D+ +I +W+AM+ GY +NG +EA K M ++GI+ E I + ACS
Sbjct: 275 ACKMFDSSGDRNSI-TWSAMVTGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVLNACS 333
Query: 333 SI 334
I
Sbjct: 334 DI 335
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 88/183 (48%), Gaps = 5/183 (2%)
Query: 132 NMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIV 191
N+ G+ VHG + + G+S I L+NFY K L A +F+ + + V W + I
Sbjct: 29 NLVAGRAVHGQIIRTGASTCIQHANVLVNFYAKCGKLAKAHSIFNAIICKDVVSWNSLIT 88
Query: 192 NNCREGHF---HQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKI 248
+ G + V F+EM + I N+YT + + KA + GRQ HA +VK+
Sbjct: 89 GYSQNGGISSSYTVMQLFREMRAQDILPNAYTLAGIFKAESSLQSS-TVGRQAHALVVKM 147
Query: 249 GLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKF 308
D YV LV MY K L+ D +VF + ++N +W+ M+ GY G EA K
Sbjct: 148 SSFGDIYVDTSLVGMYCKAGLVEDGLKVFAYM-PERNTYTWSTMVSGYATRGRVEEAIKV 206
Query: 309 LYL 311
L
Sbjct: 207 FNL 209
>gi|218526158|sp|Q9M1V3.2|PP296_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g63370
Length = 960
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 86/287 (29%), Positives = 141/287 (49%), Gaps = 9/287 (3%)
Query: 51 RLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGH 110
+L+ M+ CG LD A ++FDEMP R +W MI YV + + L+ M
Sbjct: 121 KLVFMYGKCGSLDDAEKVFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPL 180
Query: 111 MLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
L FPA +LKAC ++ G ++H LL KLG + +L++ Y K L
Sbjct: 181 GLSSFPA-----LLKACAKLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSA 235
Query: 171 ADFVFSQLK-RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A +F + + + V+W + + + G + F+EM NSYT S L AC
Sbjct: 236 ARRLFDGFQEKGDAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACD 295
Query: 230 GVDDDGNCGRQMHANIVKIGLESDE-YVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
G G+++HA+++K S E YV L+ MY +C + AER+ + + ++ +
Sbjct: 296 GF-SYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQM-NNADVVT 353
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
WN+++ GY++N +Y EA +F M A+G + E + + A +S
Sbjct: 354 WNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLS 400
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 83/334 (24%), Positives = 151/334 (45%), Gaps = 12/334 (3%)
Query: 6 LPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTA 65
+P+ + L+K C +D EL + + ++ T +N L+ M+ L A
Sbjct: 178 VPLGLSSFPALLKACAKLRDIRSGSEL-HSLLVKLGYHSTGFIVNALVSMYAKNDDLSAA 236
Query: 66 RQLFDEMPLR-DFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCV 123
R+LFD + D W ++ Y E + LF EM HM P ++ IV
Sbjct: 237 RRLFDGFQEKGDAVLWNSILSSYSTSGKSLETLELFREM------HMTGPAPNSYTIVSA 290
Query: 124 LKACVCTMNMELGKQVHGLLFKLGS-SRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
L AC +LGK++H + K + S + + +LI Y + + A+ + Q+ +
Sbjct: 291 LTACDGFSYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNAD 350
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
V W + I + + + F +M K + + +S++ A G + + G ++H
Sbjct: 351 VVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNL-LAGMELH 409
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
A ++K G +S+ V L+DMY KC L R F L + K++ SW ++ GY +N +
Sbjct: 410 AYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAF-LRMHDKDLISWTTVIAGYAQNDCH 468
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
VEA + + ++I E ++ + A S + +
Sbjct: 469 VEALELFRDVAKKRMEIDEMILGSILRASSVLKS 502
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 73/288 (25%), Positives = 132/288 (45%), Gaps = 8/288 (2%)
Query: 31 ELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDV 90
E+ + K L N L+ M+ CG++ A ++ +M D +W +I GYV
Sbjct: 305 EIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQN 364
Query: 91 ADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSR 150
Y+E + F++M+ GH + ++ A N+ G ++H + K G
Sbjct: 365 LMYKEALEFFSDMI--AAGHK---SDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDS 419
Query: 151 NISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMG 210
N+ + +LI+ Y K F ++ + + WT I + + F+++
Sbjct: 420 NLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVA 479
Query: 211 RERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLL 270
++R++ + S+L+A V +++H +I++ GL D +Q LVD+YGKCR +
Sbjct: 480 KKRMEIDEMILGSILRA-SSVLKSMLIVKEIHCHILRKGL-LDTVIQNELVDVYGKCRNM 537
Query: 271 RDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
A RVFE I K++ SW +M+ NG EA + M +G+
Sbjct: 538 GYATRVFESI-KGKDVVSWTSMISSSALNGNESEAVELFRRMVETGLS 584
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 97/225 (43%), Gaps = 2/225 (0%)
Query: 116 PAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNIS-LTGSLINFYGKFRCLEDADFV 174
P VL+ C + G+Q+H +FK S + L G L+ YGK L+DA+ V
Sbjct: 79 PVEAFAYVLELCGKRRAVSQGRQLHSRIFKTFPSFELDFLAGKLVFMYGKCGSLDDAEKV 138
Query: 175 FSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDD 234
F ++ W I G + M E + +F ++LKAC + D
Sbjct: 139 FDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDI 198
Query: 235 GNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLV 294
G ++H+ +VK+G S ++ LV MY K L A R+F+ +K + WN++L
Sbjct: 199 -RSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILS 257
Query: 295 GYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKI 339
Y +G +E + M +G I AC S +K+
Sbjct: 258 SYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKL 302
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/248 (21%), Positives = 110/248 (44%), Gaps = 9/248 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ ++ C + A ++F+ + +D SW MI + E + LF M++
Sbjct: 525 NELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRMVETG-- 582
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
L + ++C+L A + G+++H L + G S+ ++++ Y L+
Sbjct: 583 ---LSADSVALLCILSAAASLSALNKGREIHCYLLRKGFCLEGSIAVAVVDMYACCGDLQ 639
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC- 228
A VF +++R + +T+ I G F +M E + + +F ++L AC
Sbjct: 640 SAKAVFDRIERKGLLQYTSMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLALLYACS 699
Query: 229 -GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
G+ D+G ++ + ++ + YV C LVDM G+ + +A +++ +
Sbjct: 700 HAGLLDEGRGFLKIMEHEYELEPWPEHYV-C-LVDMLGRANCVVEAFEFVKMMKTEPTAE 757
Query: 288 SWNAMLVG 295
W A+L
Sbjct: 758 VWCALLAA 765
>gi|225444744|ref|XP_002278128.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
[Vitis vinifera]
Length = 597
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 85/293 (29%), Positives = 144/293 (49%), Gaps = 11/293 (3%)
Query: 47 LFLNRLLLMHVSC--GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMM 104
L L+ L++ C +D AR++FD+MP RD W +I GY D +E + L++ M
Sbjct: 61 LLLSTKLIITACCLAPTMDYARKMFDQMPKRDVFLWNTLIRGYADAGPCEEALALYSNM- 119
Query: 105 KRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYG 163
H +FP + V+++C + GK+VH + K G ++ + SL+ Y
Sbjct: 120 -----HGAGLFPDNYTFPFVVRSCAVLSALREGKEVHCNIVKHGFDSDVFVQSSLVAMYS 174
Query: 164 KFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSS 223
+ + VF ++ N V WTA I + +F + F+EM + N+ T S
Sbjct: 175 QSGETLGMELVFGEMVVRNIVSWTAVIAGYVQNRYFKEGLGVFREMVGSGTQPNAVTLVS 234
Query: 224 VLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
VL AC G++ N G+ +H +K+G++ D + L+ +YGKC + A +F+ +V
Sbjct: 235 VLPACAGLEFL-NLGKLIHGYGIKLGVDPDVSLTNALIALYGKCGNVETARSLFDGMV-V 292
Query: 284 KNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+N+ SWNAM+ Y +N A K M+A + + + AC+S+ A
Sbjct: 293 QNLVSWNAMIAAYEQNNAGANAVKLFRRMQAEKVDFDYITMVSVISACASLGA 345
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 122/257 (47%), Gaps = 9/257 (3%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
++ + P + N L+ ++ CG ++TAR LFD M +++ SW MI Y +
Sbjct: 257 KLGVDPDVSLTNALIALYGKCGNVETARSLFDGMVVQNLVSWNAMIAAYEQNNAGANAVK 316
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
LF M K + F +V V+ AC + G+ +H L+ + G N+S+T +L
Sbjct: 317 LFRRMQAEK-----VDFDYITMVSVISACASLGALNTGRWMHELVKRKGLEINVSITNAL 371
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
I+ Y K ++ A VF +L + V WT+ I GH F M E +K NS
Sbjct: 372 IDMYAKCGNIDLAREVFERLPCRSVVSWTSMIGACASHGHGEDALKLFSRMKDEGVKPNS 431
Query: 219 YTFSSVLKAC--GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERV 276
+TF++V AC G+ ++G + I + E+ C +VD+ G+ L +A
Sbjct: 432 FTFAAVFTACRHSGLVEEGRKHFESMMRDYSI-MPGVEHCAC-MVDLLGRAGSLMEAYEF 489
Query: 277 FELIVDKKNIASWNAML 293
+ + + +++ W A+L
Sbjct: 490 IDKMPVEPDVSVWGALL 506
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 70/165 (42%), Gaps = 8/165 (4%)
Query: 33 LNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVAD 92
++ + KR ++ + N L+ M+ CG +D AR++F+ +P R SW MI
Sbjct: 352 MHELVKRKGLEINVSITNALIDMYAKCGNIDLAREVFERLPCRSVVSWTSMIGACASHGH 411
Query: 93 YQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELG-KQVHGLLFKLGSSRN 151
++ + LF+ M F A V AC + +E G K ++
Sbjct: 412 GEDALKLFSRMKDEGVKPNSFTFAA-----VFTACRHSGLVEEGRKHFESMMRDYSIMPG 466
Query: 152 ISLTGSLINFYGKFRCLEDA-DFVFSQLKRHNTVVWTAKIVNNCR 195
+ +++ G+ L +A +F+ + VW A ++ +CR
Sbjct: 467 VEHCACMVDLLGRAGSLMEAYEFIDKMPVEPDVSVWGA-LLGSCR 510
>gi|6723387|emb|CAB66396.1| putative protein [Arabidopsis thaliana]
Length = 1113
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 89/290 (30%), Positives = 144/290 (49%), Gaps = 16/290 (5%)
Query: 52 LLLMHVSC---GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADY-QECITLFAEMMKRK 107
L+ M+ C G +D R++FD M SW +I GY+ + E I LF+EM+
Sbjct: 308 LVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMIT-- 365
Query: 108 KGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166
+GH V P + KAC + +GKQV G FK G + N S+ S+I+ + K
Sbjct: 366 QGH---VEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSD 422
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
+EDA F L N V + + CR +F Q F E+ + +++TF+S+L
Sbjct: 423 RMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLS 482
Query: 227 ACGGVDDDGNC--GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
GV + G+ G Q+H+ +VK+GL ++ V L+ MY KC + A RVF + + +
Sbjct: 483 ---GVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFM-ENR 538
Query: 285 NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
N+ SW +M+ G+ ++G + + M G++ E + ACS +
Sbjct: 539 NVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHV 588
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 90/346 (26%), Positives = 162/346 (46%), Gaps = 26/346 (7%)
Query: 7 PITTDMYTCLIKECTFQKDSAGAFELLNHIRKRV---NIKPTLLFLNRLLLMHVSCGQLD 63
P+ + ++ L+K C +D F L + R+ +I+P + N L+ ++ G
Sbjct: 59 PMDSVTFSSLLKSCIRARD----FRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSA 114
Query: 64 TARQLFDEMPL---RDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWII 120
A +F+ M RD SW+ M+ Y + + I +F E ++ + LV +
Sbjct: 115 KAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLE-----LGLVPNDYCY 169
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLGS-SRNISLTGSLINFYGKFR-CLEDADFVFSQL 178
V++AC + + +G+ G L K G ++ + SLI+ + K E+A VF ++
Sbjct: 170 TAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKM 229
Query: 179 KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCG 238
N V WT I + G + F +M + + +T SSV AC + ++ + G
Sbjct: 230 SELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAEL-ENLSLG 288
Query: 239 RQMHANIVKIGLESDEYVQCGLVDMYGKCRL---LRDAERVFELIVDKKNIASWNAMLVG 295
+Q+H+ ++ GL D V+C LVDMY KC + D +VF+ + D ++ SW A++ G
Sbjct: 289 KQLHSWAIRSGLVDD--VECSLVDMYAKCSADGSVDDCRKVFDRMED-HSVMSWTALITG 345
Query: 296 YIRN-GLYVEATKFLYLMKASG-IQIQESLINDLRIACSSISASKI 339
Y++N L EA M G ++ + AC ++S ++
Sbjct: 346 YMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRV 391
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 61/282 (21%), Positives = 123/282 (43%), Gaps = 8/282 (2%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
++ K C D ++L KR + N ++ M V +++ A++ F+ +
Sbjct: 376 FSSAFKACGNLSDPRVGKQVLGQAFKR-GLASNSSVANSVISMFVKSDRMEDAQRAFESL 434
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN 132
++ S+ + G ++++ L +E+ +R+ G A+ +L +
Sbjct: 435 SEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELG-----VSAFTFASLLSGVANVGS 489
Query: 133 MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192
+ G+Q+H + KLG S N + +LI+ Y K ++ A VF+ ++ N + WT+ I
Sbjct: 490 IRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITG 549
Query: 193 NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLES 252
+ G +V F +M E +K N T+ ++L AC V R ++ ++
Sbjct: 550 FAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKP 609
Query: 253 D-EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
E+ C +VD+ + LL DA + + ++ W L
Sbjct: 610 KMEHYAC-MVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFL 650
>gi|242055533|ref|XP_002456912.1| hypothetical protein SORBIDRAFT_03g045330 [Sorghum bicolor]
gi|241928887|gb|EES02032.1| hypothetical protein SORBIDRAFT_03g045330 [Sorghum bicolor]
Length = 648
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 82/249 (32%), Positives = 132/249 (53%), Gaps = 9/249 (3%)
Query: 53 LLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHML 112
L M+ G+L AR+LFDEMP R+ +W ++ V D + T+ A R G M
Sbjct: 161 LDMYFKTGRLALARRLFDEMPNRNVVAWNAVMTNAV--LDGRPIETVEAYFGLRGAGGM- 217
Query: 113 LVFPAWIIVCVL-KACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
P + VC AC + LG+Q HG + K G +++S++ S+++FYGK RC+ A
Sbjct: 218 ---PNVVSVCAFFNACAGMTCLSLGEQFHGFVAKCGFDKDVSVSNSMVDFYGKCRCMGKA 274
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
VF + N+V W + +V + G + F + R + + SS+L C G+
Sbjct: 275 RLVFDGMGVRNSVSWCSMVVAYAQNGAEEEAFLVYLGARRAGEEPTDFMVSSLLTTCAGL 334
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
+ GR +HA + ++++ +V LVDMYGKC ++DAE+VF + ++N+ +WNA
Sbjct: 335 LGL-DLGRALHAVAARSCIDANIFVASALVDMYGKCGGIQDAEQVF-FEMPQRNLVTWNA 392
Query: 292 MLVGYIRNG 300
M+ GY G
Sbjct: 393 MIGGYAHIG 401
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/251 (26%), Positives = 117/251 (46%), Gaps = 14/251 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N ++ + C + AR +FD M +R+ SW M+V Y +E ++ + R+ G
Sbjct: 259 NSMVDFYGKCRCMGKARLVFDGMGVRNSVSWCSMVVAYAQNGAEEEAFLVY--LGARRAG 316
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
F ++ +L C + ++LG+ +H + + NI + +L++ YGK ++
Sbjct: 317 EEPTDF---MVSSLLTTCAGLLGLDLGRALHAVAARSCIDANIFVASALVDMYGKCGGIQ 373
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKE--MGRERIKKNSYTFSSVLKA 227
DA+ VF ++ + N V W A I G F E MGRE N T +VL A
Sbjct: 374 DAEQVFFEMPQRNLVTWNAMIGGYAHIGDAWNALAVFDEMIMGRE-TAPNYITIVNVLTA 432
Query: 228 C--GGVDDDGNCGRQMHANIVKIGLESD-EYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
C GG+ +G Q + G+E E+ C +VD+ G+ + A + + + +
Sbjct: 433 CSRGGLTKEGYELFQTMKQ--RFGIEPRIEHYAC-VVDLLGRAGMEEQAYEIIQGMPMRP 489
Query: 285 NIASWNAMLVG 295
+I+ W A+L G
Sbjct: 490 SISVWGALLGG 500
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/266 (23%), Positives = 107/266 (40%), Gaps = 11/266 (4%)
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN 132
P S+ I G A + ++ FA M++ FP+ C
Sbjct: 76 PSPTVVSYTAFISGAAQHARPLQALSAFAAMLRLGLRPNDFTFPSAFKAAASAPPRCAA- 134
Query: 133 MELGKQVHGLLFKLGSSRNISLTG-SLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIV 191
+G QVH L + G + + + ++ Y K L A +F ++ N V W A +
Sbjct: 135 -AVGPQVHALALRFGYLPDDAFVSCAALDMYFKTGRLALARRLFDEMPNRNVVAWNAVMT 193
Query: 192 NNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC---GRQMHANIVKI 248
N +G + + + N + + AC G+ C G Q H + K
Sbjct: 194 NAVLDGRPIETVEAYFGLRGAGGMPNVVSVCAFFNACAGM----TCLSLGEQFHGFVAKC 249
Query: 249 GLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKF 308
G + D V +VD YGKCR + A VF+ + +N SW +M+V Y +NG EA
Sbjct: 250 GFDKDVSVSNSMVDFYGKCRCMGKARLVFDGM-GVRNSVSWCSMVVAYAQNGAEEEAFLV 308
Query: 309 LYLMKASGIQIQESLINDLRIACSSI 334
+ +G + + +++ L C+ +
Sbjct: 309 YLGARRAGEEPTDFMVSSLLTTCAGL 334
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 89/202 (44%), Gaps = 5/202 (2%)
Query: 119 IIVCVLKACVCTMNMELGKQVHGLLFKL-GSSRNISLTGSLINFYGKFRCLEDADFVFSQ 177
++ ++A + + + LG+ H +L + + L+N Y K A +
Sbjct: 15 LLAGAVEAAIASRSPRLGRAAHARALRLLAPALPPFICAHLVNLYSKLDLPGAAAAALAA 74
Query: 178 LKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDD--DG 235
V +TA I + Q + F M R ++ N +TF S KA
Sbjct: 75 DPSPTVVSYTAFISGAAQHARPLQALSAFAAMLRLGLRPNDFTFPSAFKAAASAPPRCAA 134
Query: 236 NCGRQMHANIVKIG-LESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLV 294
G Q+HA ++ G L D +V C +DMY K L A R+F+ + + +N+ +WNA++
Sbjct: 135 AVGPQVHALALRFGYLPDDAFVSCAALDMYFKTGRLALARRLFDEMPN-RNVVAWNAVMT 193
Query: 295 GYIRNGLYVEATKFLYLMKASG 316
+ +G +E + + ++ +G
Sbjct: 194 NAVLDGRPIETVEAYFGLRGAG 215
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 6/96 (6%)
Query: 33 LNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVAD 92
L+ + R I + + L+ M+ CG + A Q+F EMP R+ +W MI GY + D
Sbjct: 343 LHAVAARSCIDANIFVASALVDMYGKCGGIQDAEQVFFEMPQRNLVTWNAMIGGYAHIGD 402
Query: 93 YQECITLFAEMMKRKKGHMLLVFPAWI-IVCVLKAC 127
+ +F EM+ ++ P +I IV VL AC
Sbjct: 403 AWNALAVFDEMIMGRE-----TAPNYITIVNVLTAC 433
>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Vitis vinifera]
Length = 1088
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 82/314 (26%), Positives = 160/314 (50%), Gaps = 21/314 (6%)
Query: 13 YTCLIKEC----TFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDT---A 65
Y+ LI++C +FQ+ + +++++ P + ++L+++ G LD A
Sbjct: 74 YSSLIQDCIDSNSFQRGKSIHTQMISN-----GYNPDAYLMTKILMLYARSGCLDDLCYA 128
Query: 66 RQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLK 125
R+LF+EMP R+ +W MI+ Y V DY E + L+ M FP+ V+K
Sbjct: 129 RKLFEEMPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPS-----VIK 183
Query: 126 ACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVV 185
AC+ +M +Q+ + K G + N+ + G+L++ Y +F ++DA +++ + V
Sbjct: 184 ACIAMEDMGGVRQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVT 243
Query: 186 WTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV-DDDGNCGRQMHAN 244
W A I + + + + F M + + +++TF+S L+ CG + DG G+Q+H+
Sbjct: 244 WNAVIAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDG--GKQVHSK 301
Query: 245 IVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVE 304
++ G + D +V L+DMY KC +VF+ + ++N +WN+++ + G + +
Sbjct: 302 LIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEM-GERNQVTWNSIISAEAQFGHFND 360
Query: 305 ATKFLYLMKASGIQ 318
A M+ SG +
Sbjct: 361 ALVLFLRMQESGYK 374
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 91/323 (28%), Positives = 151/323 (46%), Gaps = 11/323 (3%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
+ +IK C +D G +L + + K + L L+ + G +D A DE+
Sbjct: 178 FPSVIKACIAMEDMGGVRQLQSSVVK-AGLNCNLFVGGALVDGYARFGWMDDAVTSLDEI 236
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTM 131
+W +I GYV + ++E +F M+K + V P + L+ C
Sbjct: 237 EGTSVVTWNAVIAGYVKILSWEEAWGIFDRMLK------IGVCPDNFTFASALRVCGALR 290
Query: 132 NMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIV 191
+ + GKQVH L G + + +LI+ Y K E VF ++ N V W + I
Sbjct: 291 SRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIIS 350
Query: 192 NNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLE 251
+ GHF+ F M K N + S+L A G+ D G GR++H ++V+ L
Sbjct: 351 AEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLADIGK-GRELHGHLVRNLLN 409
Query: 252 SDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYL 311
SD + LVDMY KC ++ +A +VF +++ +N S+NA+L GY++ G EA + +
Sbjct: 410 SDIILGSALVDMYSKCGMVEEAHQVFRSLLE-RNEVSYNALLAGYVQEGKAEEALELYHD 468
Query: 312 MKAS-GIQIQESLINDLRIACSS 333
M++ GIQ + L C++
Sbjct: 469 MQSEDGIQPDQFTFTTLLTLCAN 491
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/290 (26%), Positives = 148/290 (51%), Gaps = 8/290 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ C ++ ++FDEM R+ +W +I + + + LF M ++ G
Sbjct: 315 NALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRM--QESG 372
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ F + +L A ++ G+++HG L + + +I L +L++ Y K +E
Sbjct: 373 YKSNRFN---LGSILMASAGLADIGKGRELHGHLVRNLLNSDIILGSALVDMYSKCGMVE 429
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRER-IKKNSYTFSSVLKAC 228
+A VF L N V + A + +EG + + +M E I+ + +TF+++L C
Sbjct: 430 EAHQVFRSLLERNEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLC 489
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
+D N GRQ+HA++++ + + V+ LV MY +C L A+ +F + ++ N S
Sbjct: 490 ANQRND-NQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAER-NAYS 547
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASK 338
WN+M+ GY +NG EA + M+ +GI+ ++ + +C S+S S+
Sbjct: 548 WNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQ 597
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 90/353 (25%), Positives = 158/353 (44%), Gaps = 42/353 (11%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
+T L+ C Q++ ++ H+ R NI ++ L+ M+ CG+L+ A+++F+ M
Sbjct: 482 FTTLLTLCANQRNDNQGRQIHAHL-IRANITKNIIVETELVHMYSECGRLNYAKEIFNRM 540
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTM 131
R+ SW MI GY + QE + LF +M + + P + + +L +CV
Sbjct: 541 AERNAYSWNSMIEGYQQNGETQEALRLFKQM------QLNGIKPDCFSLSSMLSSCVSLS 594
Query: 132 NMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE---------------------- 169
+ + G+++H + + L L++ Y K ++
Sbjct: 595 DSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDVILNNVMVS 654
Query: 170 ---------DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYT 220
DA +F Q+++ NT +W + + +G + FN F EM I+ + T
Sbjct: 655 AFVNSGRANDAKNLFDQMEQRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLT 714
Query: 221 FSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYV-QCGLVDMYGKCRLLRDAERVFEL 279
+++ C + + G Q+H+ I+K G + V + LVDMY KC + A VF+
Sbjct: 715 MVTIVNLCSSLPALEH-GDQLHSLIIKKGFVNCSVVLETALVDMYSKCGAITKARTVFDN 773
Query: 280 IVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+ + KNI SWNAM+ GY ++G EA M G+ E + ACS
Sbjct: 774 M-NGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACS 825
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 80/336 (23%), Positives = 146/336 (43%), Gaps = 36/336 (10%)
Query: 31 ELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDV 90
EL H+ + + + ++ + L+ M+ CG ++ A Q+F + R+ S+ ++ GYV
Sbjct: 398 ELHGHLVRNL-LNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGYVQE 456
Query: 91 ADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSR 150
+E + L+ +M + + +L C N G+Q+H L + ++
Sbjct: 457 GKAEEALELYHDMQSEDG----IQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITK 512
Query: 151 NISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMG 210
NI + L++ Y + L A +F+++ N W + I + G + FK+M
Sbjct: 513 NIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQ 572
Query: 211 RERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLL 270
IK + ++ SS+L +C + D GR++H IV+ +E + +Q LVDMY KC +
Sbjct: 573 LNGIKPDCFSLSSMLSSCVSLSDSQK-GRELHNFIVRNTMEEEGILQVVLVDMYAKCGSM 631
Query: 271 RDAERVFELIVDK------------------------------KNIASWNAMLVGYIRNG 300
A +V++ + K +N A WN++L GY G
Sbjct: 632 DYAWKVYDQTIKKDVILNNVMVSAFVNSGRANDAKNLFDQMEQRNTALWNSILAGYANKG 691
Query: 301 LYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
L E+ M S I+ + + CSS+ A
Sbjct: 692 LKKESFNHFLEMLESDIEYDVLTMVTIVNLCSSLPA 727
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 117/266 (43%), Gaps = 32/266 (12%)
Query: 42 IKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFA 101
IK ++ N ++ V+ G+ + A+ LFD+M R+ W ++ GY + +E F
Sbjct: 642 IKKDVILNNVMVSAFVNSGRANDAKNLFDQMEQRNTALWNSILAGYANKGLKKESFNHFL 701
Query: 102 EMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSR-NISLTGSLIN 160
EM++ + + +V ++ C +E G Q+H L+ K G ++ L +L++
Sbjct: 702 EMLESD-----IEYDVLTMVTIVNLCSSLPALEHGDQLHSLIIKKGFVNCSVVLETALVD 756
Query: 161 FYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYT 220
Y K + A VF + N V W A I + G + ++EM ++ + N T
Sbjct: 757 MYSKCGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVT 816
Query: 221 FSSVLKACGGVDDDGNCGRQMHANIVKIGLE-------------SDEYVQCGLVDMYGKC 267
F ++L AC H +V+ GL E+ C +VD+ G+
Sbjct: 817 FLAILSACS------------HTGLVEEGLRIFTSMQEDYNIEAKAEHYTC-MVDLLGRA 863
Query: 268 RLLRDAERVFELIVDKKNIASWNAML 293
L DA+ E + + +++W A+L
Sbjct: 864 GRLEDAKEFVEKMPIEPEVSTWGALL 889
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 66/150 (44%), Gaps = 16/150 (10%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ CG + AR +FD M ++ SW MI GY +E + L+ EM K+
Sbjct: 754 LVDMYSKCGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKG---- 809
Query: 112 LLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGS----LINFYGKFR 166
++P + + +L AC T +E G ++ + NI +++ G+
Sbjct: 810 --MYPNEVTFLAILSACSHTGLVEEGLRI---FTSMQEDYNIEAKAEHYTCMVDLLGRAG 864
Query: 167 CLEDA-DFVFSQLKRHNTVVWTAKIVNNCR 195
LEDA +FV W A ++ CR
Sbjct: 865 RLEDAKEFVEKMPIEPEVSTWGA-LLGACR 893
>gi|168041820|ref|XP_001773388.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675264|gb|EDQ61761.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 748
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 82/289 (28%), Positives = 154/289 (53%), Gaps = 10/289 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N+L+ +++ CG+L R++FD + ++ +W +MI GY + +++ I ++ +M R+ G
Sbjct: 44 NKLMSIYIRCGRLQNTREVFDTLVEKNVFNWTIMIGGYAENNHFEDAIEVYNKM--RQNG 101
Query: 110 HMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
V P I +LKAC M ++ G+++H + G ++ L +LI+ Y + +
Sbjct: 102 ----VQPNEITFFNILKACTSPMALKWGRKIHDHIRHAGFQSDLRLGNALIHMYARCGSM 157
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+DA VF+ + + + W I + G H+ F+ F +M RE ++ T+ S+L A
Sbjct: 158 DDARLVFNGMVDRDIITWNVMIGRLVQHGRGHEAFSLFLQMQREGFVPDTTTYLSMLNAN 217
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
G +++H++ ++ GLESD V LV MY + ++DA VF+ + + +NI +
Sbjct: 218 ACTGALGWV-KEVHSHALRAGLESDVRVGTALVHMYARSGSIKDARLVFDKMTE-RNIIT 275
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQE-SLINDLRIACSSISA 336
WN+M+ G ++G +EA M+ G+ + +N L AC+S A
Sbjct: 276 WNSMIGGLAQHGCGLEAFSLFRQMQREGLVPDAITYVNILNNACASTGA 324
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 80/267 (29%), Positives = 128/267 (47%), Gaps = 7/267 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ CG +D AR++F M RD SW VMI G +E +LF +M +
Sbjct: 348 NALVHMYAKCGSMDDARRVFYGMVDRDVVSWTVMIGGLAQHGFGREAFSLFLQMQREGFV 407
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
L + + +L T +E K+VH ++ + +LI+ Y K +E
Sbjct: 408 PNLTTY-----LSILNGKASTGALEWVKEVHTHAVNAELDSHLRVGNALIHMYAKCGSIE 462
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
+A VF +++ + + W A I + GH + F+ F EM RE ++ T S+L AC
Sbjct: 463 NARLVFDRMEDRDIISWNAMIGGLAQNGHGREAFSHFLEMQREGFIPDAATLVSILNACA 522
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+++H++ ++ GLESD V LV Y KC + DA VFE + ++I +W
Sbjct: 523 STRALDRV-KEVHSHALEAGLESDLRVGSALVHTYAKCGRIDDARLVFEGMA-SRDIITW 580
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASG 316
N M+ G ++G EA M+ G
Sbjct: 581 NVMIGGLAQHGREHEAFSLFLQMQDVG 607
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 88/302 (29%), Positives = 145/302 (48%), Gaps = 14/302 (4%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R ++ + L+ M+ G + AR +FD+M R+ +W MI G E +
Sbjct: 235 RAGLESDVRVGTALVHMYARSGSIKDARLVFDKMTERNIITWNSMIGGLAQHGCGLEAFS 294
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLK-ACVCTMNMELGKQVHGLLFKLGSSRNISLTGS 157
LF +M + LV A V +L AC T ++ ++VH K+G ++ + +
Sbjct: 295 LFRQMQREG-----LVPDAITYVNILNNACASTGALQWVRKVHDDAAKVGLDFDVRVGNA 349
Query: 158 LINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKN 217
L++ Y K ++DA VF + + V WT I + G + F+ F +M RE N
Sbjct: 350 LVHMYAKCGSMDDARRVFYGMVDRDVVSWTVMIGGLAQHGFGREAFSLFLQMQREGFVPN 409
Query: 218 SYTFSSVL--KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAER 275
T+ S+L KA G + +++H + V L+S V L+ MY KC + +A
Sbjct: 410 LTTYLSILNGKASTGALE---WVKEVHTHAVNAELDSHLRVGNALIHMYAKCGSIENARL 466
Query: 276 VFELIVDKKNIASWNAMLVGYIRNGLYVEA-TKFLYLMKASGIQIQESLINDLRIACSSI 334
VF+ + D ++I SWNAM+ G +NG EA + FL + + I +L++ L AC+S
Sbjct: 467 VFDRMED-RDIISWNAMIGGLAQNGHGREAFSHFLEMQREGFIPDAATLVSILN-ACAST 524
Query: 335 SA 336
A
Sbjct: 525 RA 526
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 117/258 (45%), Gaps = 11/258 (4%)
Query: 24 KDSAGAFELLNHIRKRV---NIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSW 80
K S GA E + + + L N L+ M+ CG ++ AR +FD M RD SW
Sbjct: 420 KASTGALEWVKEVHTHAVNAELDSHLRVGNALIHMYAKCGSIENARLVFDRMEDRDIISW 479
Query: 81 AVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVH 140
MI G +E + F EM + + A +V +L AC T ++ K+VH
Sbjct: 480 NAMIGGLAQNGHGREAFSHFLEMQREG-----FIPDAATLVSILNACASTRALDRVKEVH 534
Query: 141 GLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFH 200
+ G ++ + +L++ Y K ++DA VF + + + W I + G H
Sbjct: 535 SHALEAGLESDLRVGSALVHTYAKCGRIDDARLVFEGMASRDIITWNVMIGGLAQHGREH 594
Query: 201 QVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDG-NCGRQMHANIVKIGLESDEYVQCG 259
+ F+ F +M ++ T+ S+L G V + +++H + V+ G ++D V
Sbjct: 595 EAFSLFLQMQDVGFVPDAITYLSILG--GNVSIEALEWVKEVHRHAVRAGFDTDPRVSSA 652
Query: 260 LVDMYGKCRLLRDAERVF 277
LV MY KC + +A+ F
Sbjct: 653 LVHMYTKCGDIDNAKLHF 670
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 93/200 (46%), Gaps = 2/200 (1%)
Query: 117 AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFS 176
++ V +L+ ++ L KQVH + K ++ + L++ Y + L++ VF
Sbjct: 5 SYTYVDILQKVFKHKDLVLAKQVHECIIKSEMEQHPYVANKLMSIYIRCGRLQNTREVFD 64
Query: 177 QLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGN 236
L N WT I HF + +M + ++ N TF ++LKAC
Sbjct: 65 TLVEKNVFNWTIMIGGYAENNHFEDAIEVYNKMRQNGVQPNEITFFNILKACTS-PMALK 123
Query: 237 CGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGY 296
GR++H +I G +SD + L+ MY +C + DA VF +VD ++I +WN M+
Sbjct: 124 WGRKIHDHIRHAGFQSDLRLGNALIHMYARCGSMDDARLVFNGMVD-RDIITWNVMIGRL 182
Query: 297 IRNGLYVEATKFLYLMKASG 316
+++G EA M+ G
Sbjct: 183 VQHGRGHEAFSLFLQMQREG 202
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 65/125 (52%), Gaps = 2/125 (1%)
Query: 214 IKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDA 273
I +SYT+ +L+ D +Q+H I+K +E YV L+ +Y +C L++
Sbjct: 1 ISIDSYTYVDILQKVFK-HKDLVLAKQVHECIIKSEMEQHPYVANKLMSIYIRCGRLQNT 59
Query: 274 ERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSS 333
VF+ +V+K N+ +W M+ GY N + +A + M+ +G+Q E ++ AC+S
Sbjct: 60 REVFDTLVEK-NVFNWTIMIGGYAENNHFEDAIEVYNKMRQNGVQPNEITFFNILKACTS 118
Query: 334 ISASK 338
A K
Sbjct: 119 PMALK 123
>gi|357149883|ref|XP_003575265.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Brachypodium distachyon]
Length = 877
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 87/311 (27%), Positives = 146/311 (46%), Gaps = 8/311 (2%)
Query: 27 AGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL-RDFNSWAVMIV 85
AG L+ + + + N L+ M+ G +D AR +FDE R+ SW ++
Sbjct: 116 AGFGTQLHALAMATGLGGDIFVANALVAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMS 175
Query: 86 GYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFK 145
YV + +F EM+ F CV+ AC + ++E G++VH ++ +
Sbjct: 176 AYVKNDRCSHAVKVFGEMVWGGVQPNEFGFS-----CVVNACTGSRDLEAGRKVHAMVIR 230
Query: 146 LGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFND 205
G +++ +L++ Y K + A VF ++ + V W A I GH
Sbjct: 231 TGYDKDVFTANALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALEL 290
Query: 206 FKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYG 265
+M + N +T SS+LKAC G N GRQ+H +VK +SD Y+ GLVDMY
Sbjct: 291 LLQMKSSGLVPNVFTLSSILKACAG-SGAFNLGRQIHGFMVKANADSDNYIAFGLVDMYA 349
Query: 266 KCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLIN 325
K LL DA++VF+ I ++++ WNA++ G + EA M+ G + + +
Sbjct: 350 KHGLLDDAKKVFDWI-PQRDLVLWNALISGCSHGAQHAEALSLFCRMRKEGFDVNRTTLA 408
Query: 326 DLRIACSSISA 336
+ + +S+ A
Sbjct: 409 AVLKSTASLEA 419
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 88/294 (29%), Positives = 138/294 (46%), Gaps = 17/294 (5%)
Query: 47 LFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR 106
+F N LL + C +AR++FDE+P SW+ ++ Y + A ++ + F M
Sbjct: 38 VFRNHLLSFYSKCRLPGSARRVFDEIPDPCHVSWSSLVTAYSNNAMPRDALGAFRSMRSC 97
Query: 107 KKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166
V P VLK C + G Q+H L G +I + +L+ YG F
Sbjct: 98 SVRCNEFVLP-----VVLK---CAPDAGFGTQLHALAMATGLGGDIFVANALVAMYGGFG 149
Query: 167 CLEDADFVFSQLK-RHNTVVWT---AKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFS 222
+++A VF + NTV W + V N R H +VF EM ++ N + FS
Sbjct: 150 FVDEARMVFDEAGCERNTVSWNGLMSAYVKNDRCSHAVKVFG---EMVWGGVQPNEFGFS 206
Query: 223 SVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282
V+ AC G D GR++HA +++ G + D + LVDMY K +R A VF V
Sbjct: 207 CVVNACTG-SRDLEAGRKVHAMVIRTGYDKDVFTANALVDMYSKLGDIRMAAVVFGK-VP 264
Query: 283 KKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+ ++ SWNA + G + +G A + L MK+SG+ ++ + AC+ A
Sbjct: 265 ETDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGSGA 318
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 88/322 (27%), Positives = 143/322 (44%), Gaps = 14/322 (4%)
Query: 14 TCLIKECTFQKDSAGAFELLNHIRK---RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFD 70
+ ++K C +GAF L I + N L+ M+ G LD A+++FD
Sbjct: 307 SSILKACA----GSGAFNLGRQIHGFMVKANADSDNYIAFGLVDMYAKHGLLDDAKKVFD 362
Query: 71 EMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCT 130
+P RD W +I G A + E ++LF M RK+G + VLK+
Sbjct: 363 WIPQRDLVLWNALISGCSHGAQHAEALSLFCRM--RKEG---FDVNRTTLAAVLKSTASL 417
Query: 131 MNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKI 190
+ +QVH L KLG + + LI+ Y K CL A VF + ++ + +T+ I
Sbjct: 418 EAISDTRQVHALAEKLGFLSDSHVVNGLIDSYWKCDCLNYAYRVFEKHGSYDIIAFTSMI 477
Query: 191 VNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGL 250
+ H F EM R+ + + + SS+L AC + G+Q+HA+++K
Sbjct: 478 TALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLNACASLSAYEQ-GKQVHAHLIKRQF 536
Query: 251 ESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLY 310
SD + LV Y KC + DA+ F + +K + SW+AM+ G ++G A +
Sbjct: 537 MSDVFAGNALVYTYAKCGSIEDADLAFSGL-PEKGVVSWSAMIGGLAQHGHGKRALDVFH 595
Query: 311 LMKASGIQIQESLINDLRIACS 332
M I + + AC+
Sbjct: 596 RMVDEHISPNHITMTSVLCACN 617
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 76/279 (27%), Positives = 125/279 (44%), Gaps = 17/279 (6%)
Query: 26 SAGAFELLNHIRKRVNIKPTLLFL------NRLLLMHVSCGQLDTARQLFDEMPLRDFNS 79
S + E ++ R+ + L FL N L+ + C L+ A ++F++ D +
Sbjct: 413 STASLEAISDTRQVHALAEKLGFLSDSHVVNGLIDSYWKCDCLNYAYRVFEKHGSYDIIA 472
Query: 80 WAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQV 139
+ MI ++ I LF EM+++ L +++ +L AC E GKQV
Sbjct: 473 FTSMITALSQCDHGEDAIKLFMEMLRKG-----LDPDPFVLSSLLNACASLSAYEQGKQV 527
Query: 140 HGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHF 199
H L K ++ +L+ Y K +EDAD FS L V W+A I + GH
Sbjct: 528 HAHLIKRQFMSDVFAGNALVYTYAKCGSIEDADLAFSGLPEKGVVSWSAMIGGLAQHGHG 587
Query: 200 HQVFNDFKEMGRERIKKNSYTFSSVLKAC--GGVDDDGNCGRQMHANIVKIGLE-SDEYV 256
+ + F M E I N T +SVL AC G+ D+ R ++ G+E ++E+
Sbjct: 588 KRALDVFHRMVDEHISPNHITMTSVLCACNHAGLVDEAK--RYFNSMKEMFGIERTEEHY 645
Query: 257 QCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
C ++D+ G+ L DA + + + N A W A+L
Sbjct: 646 AC-MIDLLGRAGKLDDAMELVNSMPFQTNAAVWGALLAA 683
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 78/194 (40%), Gaps = 6/194 (3%)
Query: 128 VCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWT 187
T ++ G +H L K S L++FY K R A VF ++ V W+
Sbjct: 15 AATQSLLQGAHIHAHLLK--SGLFAVFRNHLLSFYSKCRLPGSARRVFDEIPDPCHVSWS 72
Query: 188 AKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVK 247
+ + F+ M ++ N + VLK D G Q+HA +
Sbjct: 73 SLVTAYSNNAMPRDALGAFRSMRSCSVRCNEFVLPVVLKCA----PDAGFGTQLHALAMA 128
Query: 248 IGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATK 307
GL D +V LV MYG + +A VF+ ++N SWN ++ Y++N A K
Sbjct: 129 TGLGGDIFVANALVAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSAYVKNDRCSHAVK 188
Query: 308 FLYLMKASGIQIQE 321
M G+Q E
Sbjct: 189 VFGEMVWGGVQPNE 202
>gi|115468242|ref|NP_001057720.1| Os06g0506100 [Oryza sativa Japonica Group]
gi|52075894|dbj|BAD45840.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113595760|dbj|BAF19634.1| Os06g0506100 [Oryza sativa Japonica Group]
Length = 766
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 86/326 (26%), Positives = 148/326 (45%), Gaps = 14/326 (4%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKP------TLLFLNRLLLMHVSCGQLDTAR 66
Y L+ C+ + + H+ + P + N L+ M+ C D+AR
Sbjct: 47 YAALVSACSRLRSLPQGRRVHRHLVASSSSSPDAQLAGNTVLGNHLITMYGRCAAPDSAR 106
Query: 67 QLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKA 126
Q+FDEMP R+ SWA +I +V + + LF+ M++ + + ++A
Sbjct: 107 QVFDEMPARNPVSWASVIAAHVQNGRAGDALGLFSSMLRSGT-----AADQFALGSAVRA 161
Query: 127 CVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVW 186
C ++ G+QVH K ++ + +L+ Y K ++D +F ++K + + W
Sbjct: 162 CTELGDVGTGRQVHAHALKSERGSDLIVQNALVTMYSKNGLVDDGFMLFERIKDKDLISW 221
Query: 187 TAKIVNNCREGHFHQVFNDFKEMGRE-RIKKNSYTFSSVLKACGGVDDDGNCGRQMHANI 245
+ I ++G + F+EM E N + F S +ACG V G Q+H
Sbjct: 222 GSIIAGFAQQGFEMEALQVFREMIVEGSHHPNEFHFGSAFRACGAV-GSWEYGEQIHGLS 280
Query: 246 VKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEA 305
+K L+ D YV C L DMY +C+ L D+ RV ++ ++ SWN+++ Y GL EA
Sbjct: 281 IKYRLDRDLYVGCSLSDMYARCKNL-DSARVAFYRIEAPDLVSWNSIVNAYSVEGLLSEA 339
Query: 306 TKFLYLMKASGIQIQESLINDLRIAC 331
M+ SG++ + L AC
Sbjct: 340 LVLFSEMRDSGLRPDGITVRGLLCAC 365
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 80/281 (28%), Positives = 133/281 (47%), Gaps = 8/281 (2%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+ C LD+AR F + D SW ++ Y E + LF+EM R G +
Sbjct: 298 MYARCKNLDSARVAFYRIEAPDLVSWNSIVNAYSVEGLLSEALVLFSEM--RDSG----L 351
Query: 115 FPAWIIV-CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADF 173
P I V +L ACV + G+ +H L KLG ++S+ SL++ Y + L A
Sbjct: 352 RPDGITVRGLLCACVGRDALYHGRLIHSYLVKLGLDGDVSVCNSLLSMYARCSDLSSAMD 411
Query: 174 VFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDD 233
VF ++K + V W + + + H +V F + + + + ++VL A +
Sbjct: 412 VFHEIKDQDVVTWNSILTACAQHNHPEEVLKLFSLLNKSEPSLDRISLNNVLSASAELGY 471
Query: 234 DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
+Q+HA K GL D + L+D Y KC L DA R+FE++ + +++ SW++++
Sbjct: 472 -FEMVKQVHAYAFKAGLVDDRMLSNTLIDTYAKCGSLDDAMRLFEIMGNNRDVFSWSSLI 530
Query: 294 VGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
VGY + G EA M++ GI+ + ACS +
Sbjct: 531 VGYAQFGYAKEAFDLFSRMRSLGIRPNHVTFIGVLTACSRV 571
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 80/318 (25%), Positives = 142/318 (44%), Gaps = 7/318 (2%)
Query: 17 IKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRD 76
++ CT D ++ H K L+ N L+ M+ G +D LF+ + +D
Sbjct: 159 VRACTELGDVGTGRQVHAHALKSER-GSDLIVQNALVTMYSKNGLVDDGFMLFERIKDKD 217
Query: 77 FNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELG 136
SW +I G+ E + +F EM+ H + +AC + E G
Sbjct: 218 LISWGSIIAGFAQQGFEMEALQVFREMIVEGSHHP----NEFHFGSAFRACGAVGSWEYG 273
Query: 137 KQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCRE 196
+Q+HGL K R++ + SL + Y + + L+ A F +++ + V W + + E
Sbjct: 274 EQIHGLSIKYRLDRDLYVGCSLSDMYARCKNLDSARVAFYRIEAPDLVSWNSIVNAYSVE 333
Query: 197 GHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYV 256
G + F EM ++ + T +L AC G D + GR +H+ +VK+GL+ D V
Sbjct: 334 GLLSEALVLFSEMRDSGLRPDGITVRGLLCACVGRDALYH-GRLIHSYLVKLGLDGDVSV 392
Query: 257 QCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASG 316
L+ MY +C L A VF I D +++ +WN++L ++ E K L+ S
Sbjct: 393 CNSLLSMYARCSDLSSAMDVFHEIKD-QDVVTWNSILTACAQHNHPEEVLKLFSLLNKSE 451
Query: 317 IQIQESLINDLRIACSSI 334
+ +N++ A + +
Sbjct: 452 PSLDRISLNNVLSASAEL 469
Score = 42.0 bits (97), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 28 GAFELLNHIRK---RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMP-LRDFNSWAVM 83
G FE++ + + + + N L+ + CG LD A +LF+ M RD SW+ +
Sbjct: 470 GYFEMVKQVHAYAFKAGLVDDRMLSNTLIDTYAKCGSLDDAMRLFEIMGNNRDVFSWSSL 529
Query: 84 IVGYVDVADYQECITLFAEM 103
IVGY +E LF+ M
Sbjct: 530 IVGYAQFGYAKEAFDLFSRM 549
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 8/104 (7%)
Query: 238 GRQMHANIVKIGLESDEYVQCG-------LVDMYGKCRLLRDAERVFELIVDKKNIASWN 290
GR++H ++V S + G L+ MYG+C A +VF+ + +N SW
Sbjct: 63 GRRVHRHLVASSSSSPDAQLAGNTVLGNHLITMYGRCAAPDSARQVFDEM-PARNPVSWA 121
Query: 291 AMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
+++ +++NG +A M SG + + AC+ +
Sbjct: 122 SVIAAHVQNGRAGDALGLFSSMLRSGTAADQFALGSAVRACTEL 165
>gi|357145591|ref|XP_003573696.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18520-like [Brachypodium distachyon]
Length = 618
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 149/308 (48%), Gaps = 10/308 (3%)
Query: 33 LNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVAD 92
++ I R P + N L+ + ++ AR++FDEMP + SW +I GY +
Sbjct: 103 VHAISVRSPDGPGMFVANNLINAYARFHEISDARKVFDEMPDKSVVSWTAIINGYQKSGN 162
Query: 93 YQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNI 152
Y E + LF +M+ L F VC+LK+C N +LG+QVH + K G S N+
Sbjct: 163 YNEVVRLFLDMVGSGVRGNSLTF-----VCLLKSCGEQCNTKLGRQVHCCVVKGGWS-NV 216
Query: 153 SLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRE 212
+ ++++FY + + A +F ++ + + WT I + G + F M E
Sbjct: 217 IMDSAVVHFYAQCGHIASASTMFDKMASRDVISWTTMITAYVQHGRGDKALEMFSVMVSE 276
Query: 213 RIKKNSYTFSSVLKACGGVDDDG-NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLR 271
N +T S+LKAC D+ G+Q+H IVK + D +V LV MY + +
Sbjct: 277 GYYPNEFTVCSILKACS--DEKAFRFGKQLHGAIVKKLYKDDIHVGSALVTMYARLGEVF 334
Query: 272 DAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
DA+ VF+ + ++N +W +M+ GY ++G +A MK + I I L AC
Sbjct: 335 DAQAVFDKMA-RRNTITWTSMISGYAQSGHGEKAILLFQNMKMRRVSINNLTIVGLLSAC 393
Query: 332 SSISASKI 339
SI + ++
Sbjct: 394 GSIQSLRL 401
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 86/319 (26%), Positives = 159/319 (49%), Gaps = 8/319 (2%)
Query: 16 LIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLR 75
++K C+ +K +L I K++ K + + L+ M+ G++ A+ +FD+M R
Sbjct: 288 ILKACSDEKAFRFGKQLHGAIVKKL-YKDDIHVGSALVTMYARLGEVFDAQAVFDKMARR 346
Query: 76 DFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMEL 135
+ +W MI GY ++ I LF M R+ + IV +L AC ++ L
Sbjct: 347 NTITWTSMISGYAQSGHGEKAILLFQNMKMRR-----VSINNLTIVGLLSACGSIQSLRL 401
Query: 136 GKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCR 195
GK++H + K N+ + +L+ Y K A + + + + WTA I
Sbjct: 402 GKELHAQIIKNSIQENLQIGSTLVWCYCKCGEYTYAARILKDMPDRDAISWTAMISGYNS 461
Query: 196 EGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEY 255
GH + +M + +K N+YT+SS LKAC ++ + GR++H + K + +
Sbjct: 462 VGHNAEALKSLDDMLWDGVKPNTYTYSSALKACAKLEALQD-GRRIHGVVNKTPAFLNVF 520
Query: 256 VQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKAS 315
V L+DMY +C + DA RVF+ + + N+ +W ++ G+ +NGL EA K++YLM+
Sbjct: 521 VGSSLIDMYMRCGNVDDARRVFDAMPEH-NLVTWKVIITGFAQNGLCEEAFKYMYLMQQE 579
Query: 316 GIQIQESLINDLRIACSSI 334
G + + +++ + +C +
Sbjct: 580 GHDVDDFVLSKVLTSCGDL 598
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/282 (29%), Positives = 132/282 (46%), Gaps = 9/282 (3%)
Query: 56 HVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVF 115
+ CG + +A +FD+M RD SW MI YV + + +F+ M+ +
Sbjct: 226 YAQCGHIASASTMFDKMASRDVISWTTMITAYVQHGRGDKALEMFSVMVSEG------YY 279
Query: 116 PAWIIVC-VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFV 174
P VC +LKAC GKQ+HG + K +I + +L+ Y + + DA V
Sbjct: 280 PNEFTVCSILKACSDEKAFRFGKQLHGAIVKKLYKDDIHVGSALVTMYARLGEVFDAQAV 339
Query: 175 FSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDD 234
F ++ R NT+ WT+ I + GH + F+ M R+ N+ T +L ACG +
Sbjct: 340 FDKMARRNTITWTSMISGYAQSGHGEKAILLFQNMKMRRVSINNLTIVGLLSACGSIQSL 399
Query: 235 GNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLV 294
G+++HA I+K ++ + + LV Y KC A R+ + + D+ I SW AM+
Sbjct: 400 -RLGKELHAQIIKNSIQENLQIGSTLVWCYCKCGEYTYAARILKDMPDRDAI-SWTAMIS 457
Query: 295 GYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
GY G EA K L M G++ + AC+ + A
Sbjct: 458 GYNSVGHNAEALKSLDDMLWDGVKPNTYTYSSALKACAKLEA 499
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 100/200 (50%), Gaps = 3/200 (1%)
Query: 137 KQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCRE 196
++VH + + + + +LIN Y +F + DA VF ++ + V WTA I +
Sbjct: 101 RRVHAISVRSPDGPGMFVANNLINAYARFHEISDARKVFDEMPDKSVVSWTAIINGYQKS 160
Query: 197 GHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYV 256
G++++V F +M ++ NS TF +LK+C G + GRQ+H +VK G S+ +
Sbjct: 161 GNYNEVVRLFLDMVGSGVRGNSLTFVCLLKSC-GEQCNTKLGRQVHCCVVKGGW-SNVIM 218
Query: 257 QCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASG 316
+V Y +C + A +F+ + +++ SW M+ Y+++G +A + +M + G
Sbjct: 219 DSAVVHFYAQCGHIASASTMFDKMA-SRDVISWTTMITAYVQHGRGDKALEMFSVMVSEG 277
Query: 317 IQIQESLINDLRIACSSISA 336
E + + ACS A
Sbjct: 278 YYPNEFTVCSILKACSDEKA 297
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 92/205 (44%), Gaps = 13/205 (6%)
Query: 34 NHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADY 93
N I++ + I TL++ + CG+ A ++ +MP RD SW MI GY V
Sbjct: 412 NSIQENLQIGSTLVWC------YCKCGEYTYAARILKDMPDRDAISWTAMISGYNSVGHN 465
Query: 94 QECITLFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNI 152
E + +M+ V P + LKAC ++ G+++HG++ K + N+
Sbjct: 466 AEALKSLDDMLWDG------VKPNTYTYSSALKACAKLEALQDGRRIHGVVNKTPAFLNV 519
Query: 153 SLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRE 212
+ SLI+ Y + ++DA VF + HN V W I + G + F M +E
Sbjct: 520 FVGSSLIDMYMRCGNVDDARRVFDAMPEHNLVTWKVIITGFAQNGLCEEAFKYMYLMQQE 579
Query: 213 RIKKNSYTFSSVLKACGGVDDDGNC 237
+ + S VL +CG + +C
Sbjct: 580 GHDVDDFVLSKVLTSCGDLQWKSDC 604
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 58/109 (53%), Gaps = 5/109 (4%)
Query: 210 GRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRL 269
G ++ +S+L++CG VDD R++HA V+ +V L++ Y +
Sbjct: 76 GNSPGSPDAEALASLLRSCGSVDDV----RRVHAISVRSPDGPGMFVANNLINAYARFHE 131
Query: 270 LRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
+ DA +VF+ + D K++ SW A++ GY ++G Y E + M SG++
Sbjct: 132 ISDARKVFDEMPD-KSVVSWTAIINGYQKSGNYNEVVRLFLDMVGSGVR 179
>gi|225430696|ref|XP_002266026.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g47840 [Vitis vinifera]
Length = 713
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 80/283 (28%), Positives = 132/283 (46%), Gaps = 7/283 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L M+ CG+L+ LF++M +RD SW +I V + + + F M +
Sbjct: 256 NTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVS 315
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
F A V+ C +E G+Q+H L+ LG + ++S+ S++ Y K L
Sbjct: 316 PNEYTFAA-----VISGCANLARIEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQLT 370
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
+ +F ++ R + V W+ I + GH + F M E K + +SVL ACG
Sbjct: 371 SSSVIFHEMTRRDIVSWSTIIAGYSQGGHVSEAFELLSWMRMEGPKPTEFALASVLSACG 430
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ + G+Q+HA ++ IGLE V L++MY KC + +A R+F+ + +I SW
Sbjct: 431 NMAILEH-GKQLHAYVLSIGLEHTAMVLSALINMYCKCGSIEEASRIFD-AAENDDIVSW 488
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
AM+ GY +G E + G++ + ACS
Sbjct: 489 TAMINGYAEHGYSREVIDLFEKIPRVGLRPDSVTFIGVLSACS 531
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 85/288 (29%), Positives = 139/288 (48%), Gaps = 10/288 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N+ L V G L AR++FD+M +D SW +I GYV+ D E + LF M + + G
Sbjct: 53 NKQLKELVKTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNM-RVESG 111
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
L +I+ KAC ++ G+ +HG K G ++ + +L++ Y K +
Sbjct: 112 ---LRIDPFILSLAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIF 168
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
+ VF ++ N V WTA I R G+ + F EM R R++ +SYTF+ LKAC
Sbjct: 169 EGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACA 228
Query: 230 GVDDDG--NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
D G N GR++HA +K G + +V L MY KC L +FE + +++
Sbjct: 229 ---DSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKM-SMRDVV 284
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
SW ++ ++ G A + M+ S + E + C++++
Sbjct: 285 SWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLA 332
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 77/305 (25%), Positives = 143/305 (46%), Gaps = 7/305 (2%)
Query: 31 ELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDV 90
ELL+ + + ++ + LL M+ G++ R++F EMP+R+ SW +I G V
Sbjct: 136 ELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMRNVVSWTAIITGLVRA 195
Query: 91 ADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSR 150
+E + F+EM + + + + ++ LKAC + + G+++H K G
Sbjct: 196 GYNKEALVYFSEMWRSR-----VEYDSYTFAIALKACADSGALNYGREIHAQAMKKGFDV 250
Query: 151 NISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMG 210
+ + +L Y K LE +F ++ + V WT I + G F M
Sbjct: 251 SSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMR 310
Query: 211 RERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLL 270
+ N YTF++V+ C + G Q+HA I+ +GL + V+ ++ MY KC L
Sbjct: 311 ESDVSPNEYTFAAVISGCANLARI-EWGEQLHALILHLGLAASLSVENSIMTMYAKCGQL 369
Query: 271 RDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIA 330
+ +F + +++I SW+ ++ GY + G EA + L M+ G + E + + A
Sbjct: 370 TSSSVIFHEMT-RRDIVSWSTIIAGYSQGGHVSEAFELLSWMRMEGPKPTEFALASVLSA 428
Query: 331 CSSIS 335
C +++
Sbjct: 429 CGNMA 433
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 74/276 (26%), Positives = 123/276 (44%), Gaps = 31/276 (11%)
Query: 31 ELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDV 90
E L+ + + + +L N ++ M+ CGQL ++ +F EM RD SW+ +I GY
Sbjct: 338 EQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYSQG 397
Query: 91 ADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSR 150
E L + M R +G F + VL AC +E GKQ+H + +G
Sbjct: 398 GHVSEAFELLSWM--RMEGPKPTEFA---LASVLSACGNMAILEHGKQLHAYVLSIGLEH 452
Query: 151 NISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMG 210
+ +LIN Y K +E+A +F + + V WTA I G+ +V + F+++
Sbjct: 453 TAMVLSALINMYCKCGSIEEASRIFDAAENDDIVSWTAMINGYAEHGYSREVIDLFEKIP 512
Query: 211 RERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGL-------------ESDEYVQ 257
R ++ +S TF VL AC HA +V +G S E+
Sbjct: 513 RVGLRPDSVTFIGVLSACS------------HAGLVDLGFRYFNAMSKKYQISPSKEHYG 560
Query: 258 CGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
C ++D+ + L DAE + E + ++ W+ +L
Sbjct: 561 C-MIDLLCRAGRLSDAEHMIEAMPFHRDDVVWSTLL 595
>gi|302789718|ref|XP_002976627.1| hypothetical protein SELMODRAFT_105356 [Selaginella moellendorffii]
gi|300155665|gb|EFJ22296.1| hypothetical protein SELMODRAFT_105356 [Selaginella moellendorffii]
Length = 734
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 99/333 (29%), Positives = 147/333 (44%), Gaps = 24/333 (7%)
Query: 10 TDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLF 69
T + CL+ C+ S GA E I R+ KP L + ++ M+ CG ++ A F
Sbjct: 306 TFTHVCLLGACS----SLGALEEGERIHARMGDKPDGLAGSAIVAMYAKCGGIEHAMTAF 361
Query: 70 DEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVC 129
+M + W +I GYV +QE + L+ M + F + VL AC
Sbjct: 362 TKMSSSNVVVWNALIAGYVQGEHWQEALDLYHAMNLEGLEADIYTFSS-----VLGACSG 416
Query: 130 TMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAK 189
++ G+ VH + G + L L+N + K L A +F + NTV W +
Sbjct: 417 AKDLSEGRAVHARIVSRGLEVVVPLQNGLVNMFAKCGSLTLALEMFRGMASRNTVSWNSM 476
Query: 190 IVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL-----KACGGVDDDGNCGRQMHAN 244
+ C+ G F FKEM E + + TF+S+L AC +D G+ +H
Sbjct: 477 VTAFCQHGDGGGAFELFKEMLLEGGEPHEQTFTSILNFCSHSACSSLDQ----GKALHQR 532
Query: 245 IVKIGLESDEYVQCGLVDMY-----GKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRN 299
I G++SD V L+ MY KC L DA VF+ I KN+ SW AM+VGY ++
Sbjct: 533 ITASGVDSDPTVATCLLTMYLLNALAKCGALDDARAVFDGI-RGKNVLSWTAMIVGYAQH 591
Query: 300 GLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
A + M+ GIQ E + ACS
Sbjct: 592 ARGDGALELFREMELDGIQADEITFTSILHACS 624
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 91/326 (27%), Positives = 154/326 (47%), Gaps = 12/326 (3%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
Y L++EC K + E+ + + K T L N L+ M+ +CG + AR++FD++
Sbjct: 6 YGRLLRECGLSKSLSKGMEIHKKLAESGVDKDTYLG-NNLIQMYGNCGCVGKAREIFDKL 64
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN 132
R+ SW +M+ Y Y E + L +M + F WI L AC +
Sbjct: 65 IDRNVYSWTIMLSAYAQNGHYMEALVLSYQMDLEGIRPNSVTF-LWI----LGACSNLGD 119
Query: 133 MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192
+E G+++H + LG + ++ +++ Y K L DA +F L+R + V WTA I
Sbjct: 120 VETGRKIHARMVFLGWDTDTVVSTAILGMYSKCEKLGDAKKIFDSLRRKDVVSWTAIITA 179
Query: 193 NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVD--DDGNCGRQMHANIVKIGL 250
+ G F EM + +K N TF ++L AC +D +DG+ +++ + G
Sbjct: 180 FSQLGRPRVALELFWEMDLDGVKPNESTFVNILAACTYMDALEDGD---KLYKRAISCGY 236
Query: 251 ESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLY 310
+D +V V MY + L +A+ F+ + +K+ SWNA++ YI++G +A
Sbjct: 237 GADVFVGSTAVTMYSRFGNLVEAKAAFDHL-REKSTGSWNAIVRAYIQHGHISQALSLYK 295
Query: 311 LMKASGIQIQESLINDLRIACSSISA 336
M G + L ACSS+ A
Sbjct: 296 EMDVHGAEPDTFTHVCLLGACSSLGA 321
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 82/289 (28%), Positives = 132/289 (45%), Gaps = 15/289 (5%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+ G L A+ FD + + SW ++ Y+ + ++L+ EM G
Sbjct: 249 MYSRFGNLVEAKAAFDHLREKSTGSWNAIVRAYIQHGHISQALSLYKEM--DVHGAEPDT 306
Query: 115 FPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFV 174
F VC+L AC +E G+++H ++G + +++ Y K +E A
Sbjct: 307 FTH---VCLLGACSSLGALEEGERIHA---RMGDKPDGLAGSAIVAMYAKCGGIEHAMTA 360
Query: 175 FSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDD 234
F+++ N VVW A I + H+ + + + M E ++ + YTFSSVL AC G D
Sbjct: 361 FTKMSSSNVVVWNALIAGYVQGEHWQEALDLYHAMNLEGLEADIYTFSSVLGACSGAKDL 420
Query: 235 GNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLV 294
GR +HA IV GLE +Q GLV+M+ KC L A +F + +N SWN+M+
Sbjct: 421 SE-GRAVHARIVSRGLEVVVPLQNGLVNMFAKCGSLTLALEMFRGMA-SRNTVSWNSMVT 478
Query: 295 GYIRNGLYVEATKFLYLMKASGIQIQESLINDL-----RIACSSISASK 338
+ ++G A + M G + E + ACSS+ K
Sbjct: 479 AFCQHGDGGGAFELFKEMLLEGGEPHEQTFTSILNFCSHSACSSLDQGK 527
>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 763
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 97/309 (31%), Positives = 139/309 (44%), Gaps = 28/309 (9%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L+ N L+ +V L ARQLFD MP+RD SW MI GY V D + LF E
Sbjct: 201 LISWNCLMGGYVKRNMLGDARQLFDRMPVRDVISWNTMISGYAQVGDLSQAKRLFNESPI 260
Query: 106 RKKGHMLLVFPAWIIVCVLKACV---------------CTMNMELGKQVH-------GLL 143
R + + A + V V + N L V G L
Sbjct: 261 RD----VFTWTAMVSGYVQNGMVDEARKYFDEMPVKNEISYNAMLAGYVQYKKMVIAGEL 316
Query: 144 FKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVF 203
F+ RNIS ++I YG+ + A +F + + + V W A I + GH+ +
Sbjct: 317 FEAMPCRNISSWNTMITGYGQNGGIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEAL 376
Query: 204 NDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDM 263
N F EM R+ N TFS L C + G+Q+H +VK G E+ +V L+ M
Sbjct: 377 NMFVEMKRDGESSNRSTFSCALSTCADIAAL-ELGKQVHGQVVKAGFETGCFVGNALLGM 435
Query: 264 YGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESL 323
Y KC +A VFE I ++K++ SWN M+ GY R+G +A MK +G++ E
Sbjct: 436 YFKCGSTDEANDVFEGI-EEKDVVSWNTMIAGYARHGFGRQALVLFESMKKAGVKPDEIT 494
Query: 324 INDLRIACS 332
+ + ACS
Sbjct: 495 MVGVLSACS 503
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 72/246 (29%), Positives = 108/246 (43%), Gaps = 9/246 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N ++ + G + AR+LFD MP RD SWA +I GY Y+E + +F EM + +
Sbjct: 329 NTMITGYGQNGGIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDGES 388
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
F C L C +ELGKQVHG + K G + +L+ Y K +
Sbjct: 389 SNRSTFS-----CALSTCADIAALELGKQVHGQVVKAGFETGCFVGNALLGMYFKCGSTD 443
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC- 228
+A+ VF ++ + V W I R G Q F+ M + +K + T VL AC
Sbjct: 444 EANDVFEGIEEKDVVSWNTMIAGYARHGFGRQALVLFESMKKAGVKPDEITMVGVLSACS 503
Query: 229 -GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
G+ D G + S Y C ++D+ G+ L +AE + + A
Sbjct: 504 HSGLIDRGTEYFYSMDRDYNVKPTSKHYT-C-MIDLLGRAGRLEEAENLMRNMPFDPGAA 561
Query: 288 SWNAML 293
SW A+L
Sbjct: 562 SWGALL 567
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 72/316 (22%), Positives = 125/316 (39%), Gaps = 42/316 (13%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L N +L +V +L A +LFD MP +D SW M+ GY E +F +M
Sbjct: 108 LFSWNVMLTGYVRNRRLGEAHKLFDLMPKKDVVSWNAMLSGYAQNGFVDEAREVFNKMPH 167
Query: 106 RKKGHMLLVFPAWIIVCVLKACV---------------CTMNMELGKQVHG---LLFKLG 147
R + A++ LK C M + + + G LF
Sbjct: 168 RNSISWNGLLAAYVHNGRLKEARRLFESQSNWELISWNCLMGGYVKRNMLGDARQLFDRM 227
Query: 148 SSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFK 207
R++ ++I+ Y + L A +F++ + WTA + + G + F
Sbjct: 228 PVRDVISWNTMISGYAQVGDLSQAKRLFNESPIRDVFTWTAMVSGYVQNGMVDEARKYFD 287
Query: 208 EMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQC-------GL 260
EM KN +++++L G + +V G E E + C +
Sbjct: 288 EM----PVKNEISYNAML-----------AGYVQYKKMVIAG-ELFEAMPCRNISSWNTM 331
Query: 261 VDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQ 320
+ YG+ + A ++F+++ +++ SW A++ GY +NG Y EA MK G
Sbjct: 332 ITGYGQNGGIAQARKLFDMM-PQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDGESSN 390
Query: 321 ESLINDLRIACSSISA 336
S + C+ I+A
Sbjct: 391 RSTFSCALSTCADIAA 406
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 62/271 (22%), Positives = 118/271 (43%), Gaps = 33/271 (12%)
Query: 44 PTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEM 103
P ++ N+ + H+ G D+A ++F+ MP R S+ MI GY+ A + LF +M
Sbjct: 44 PDIVTWNKAISSHMRNGHCDSALRVFNSMPRRSSVSYNAMISGYLRNAKFSLARDLFDKM 103
Query: 104 MKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYG 163
+R ++ ++ N LG + H LF L +++ ++++ Y
Sbjct: 104 PERDLFSWNVMLTGYV-----------RNRRLG-EAHK-LFDLMPKKDVVSWNAMLSGYA 150
Query: 164 KFRCLEDADFVFSQLKRHNTVVWT---AKIVNNCREGHFHQVFNDFKEMGRERIKKNSYT 220
+ +++A VF+++ N++ W A V+N R KE R ++++
Sbjct: 151 QNGFVDEAREVFNKMPHRNSISWNGLLAAYVHNGR----------LKEARRLFESQSNWE 200
Query: 221 FSSVLKACGGVDDDGNCG--RQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE 278
S GG G RQ+ + D ++ Y + L A+R+F
Sbjct: 201 LISWNCLMGGYVKRNMLGDARQLFDRMPV----RDVISWNTMISGYAQVGDLSQAKRLFN 256
Query: 279 LIVDKKNIASWNAMLVGYIRNGLYVEATKFL 309
+++ +W AM+ GY++NG+ EA K+
Sbjct: 257 E-SPIRDVFTWTAMVSGYVQNGMVDEARKYF 286
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 10/136 (7%)
Query: 177 QLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGN 236
+ K + V W I ++ R GH F M R + S L+ N
Sbjct: 40 KFKDPDIVTWNKAISSHMRNGHCDSALRVFNSMPRRSSVSYNAMISGYLR---------N 90
Query: 237 CGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGY 296
+ ++ E D + ++ Y + R L +A ++F+L+ KK++ SWNAML GY
Sbjct: 91 AKFSLARDLFDKMPERDLFSWNVMLTGYVRNRRLGEAHKLFDLM-PKKDVVSWNAMLSGY 149
Query: 297 IRNGLYVEATKFLYLM 312
+NG EA + M
Sbjct: 150 AQNGFVDEAREVFNKM 165
>gi|449453904|ref|XP_004144696.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33170-like [Cucumis sativus]
Length = 840
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 92/299 (30%), Positives = 143/299 (47%), Gaps = 29/299 (9%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR--- 106
N+LL G++D AR+LFD+MP RD +W +MI Y ++ + E LF E +
Sbjct: 41 NQLLSELSKNGRVDEARKLFDQMPYRDKYTWNIMISAYANLGNLVEARKLFNETPIKNSI 100
Query: 107 ----------KKG---HMLLVF---------PA-WIIVCVLKACVCTMNMELGKQVHGLL 143
K G L F P+ + + VL+AC + GK +H
Sbjct: 101 TWSSLVSGYCKNGCEVEGLRQFSQMWSDGQKPSQYTLGSVLRACSTLSLLHTGKMIHCYA 160
Query: 144 FKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK-RHNTVVWTAKIVNNCREGHFHQV 202
K+ NI + L++ Y K +CL +A+++F L R N V WTA + + G +
Sbjct: 161 IKIQLEANIFVATGLVDMYSKCKCLLEAEYLFFSLPDRKNYVQWTAMLTGYAQNGESLKA 220
Query: 203 FNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVD 262
FKEM + ++ N +TF S+L AC + GRQ+H I+ G + YVQ LVD
Sbjct: 221 IQCFKEMRNQGMESNHFTFPSILTACTSISAYA-FGRQVHGCIIWSGFGPNVYVQSALVD 279
Query: 263 MYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQE 321
MY KC L A + + ++ ++ WN+M+VG + +G EA + M I+I +
Sbjct: 280 MYAKCGDLASARMILD-TMEIDDVVCWNSMIVGCVTHGYMEEALVLFHKMHNRDIRIDD 337
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 82/278 (29%), Positives = 136/278 (48%), Gaps = 13/278 (4%)
Query: 44 PTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEM 103
P + + L+ M+ CG L +AR + D M + D W MIVG V +E + LF +M
Sbjct: 269 PNVYVQSALVDMYAKCGDLASARMILDTMEIDDVVCWNSMIVGCVTHGYMEEALVLFHKM 328
Query: 104 MKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYG 163
R +P+ VLK+ N+++G+ VH L K G +++ +L++ Y
Sbjct: 329 HNRDIRIDDFTYPS-----VLKSLASCKNLKIGESVHSLTIKTGFDACKTVSNALVDMYA 383
Query: 164 KFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSS 223
K L A VF+++ + + WT+ + G + F +M R+ + + +
Sbjct: 384 KQGNLSCALDVFNKILDKDVISWTSLVTGYVHNGFHEKALQLFCDMRTARVDLDQFVVAC 443
Query: 224 VLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
V AC + GRQ+HAN +K S + L+ MY KC L DA RVF+ + +
Sbjct: 444 VFSACAELTVI-EFGRQVHANFIKSSAGSLLSAENSLITMYAKCGCLEDAIRVFDSM-ET 501
Query: 284 KNIASWNAMLVGYIRNGL------YVEATKFLYLMKAS 315
+N+ SW A++VGY +NGL Y E+ + +Y +K +
Sbjct: 502 RNVISWTAIIVGYAQNGLVETGQSYFESMEKVYGIKPA 539
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/298 (25%), Positives = 139/298 (46%), Gaps = 8/298 (2%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLR-DFNSWAVMIVGYVDVADYQECI 97
++ ++ + L+ M+ C L A LF +P R ++ W M+ GY + + I
Sbjct: 162 KIQLEANIFVATGLVDMYSKCKCLLEAEYLFFSLPDRKNYVQWTAMLTGYAQNGESLKAI 221
Query: 98 TLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGS 157
F EM + FP+ +L AC G+QVHG + G N+ + +
Sbjct: 222 QCFKEMRNQGMESNHFTFPS-----ILTACTSISAYAFGRQVHGCIIWSGFGPNVYVQSA 276
Query: 158 LINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKN 217
L++ Y K L A + ++ + V W + IV G+ + F +M I+ +
Sbjct: 277 LVDMYAKCGDLASARMILDTMEIDDVVCWNSMIVGCVTHGYMEEALVLFHKMHNRDIRID 336
Query: 218 SYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVF 277
+T+ SVLK+ + G +H+ +K G ++ + V LVDMY K L A VF
Sbjct: 337 DFTYPSVLKSLASC-KNLKIGESVHSLTIKTGFDACKTVSNALVDMYAKQGNLSCALDVF 395
Query: 278 ELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
I+D K++ SW +++ GY+ NG + +A + M+ + + + + ++ + AC+ ++
Sbjct: 396 NKILD-KDVISWTSLVTGYVHNGFHEKALQLFCDMRTARVDLDQFVVACVFSACAELT 452
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 97/179 (54%), Gaps = 1/179 (0%)
Query: 158 LINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKN 217
+I+ Y L +A +F++ N++ W++ + C+ G + F +M + K +
Sbjct: 74 MISAYANLGNLVEARKLFNETPIKNSITWSSLVSGYCKNGCEVEGLRQFSQMWSDGQKPS 133
Query: 218 SYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVF 277
YT SVL+AC + + G+ +H +KI LE++ +V GLVDMY KC+ L +AE +F
Sbjct: 134 QYTLGSVLRACSTLSLL-HTGKMIHCYAIKIQLEANIFVATGLVDMYSKCKCLLEAEYLF 192
Query: 278 ELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+ D+KN W AML GY +NG ++A + M+ G++ + AC+SISA
Sbjct: 193 FSLPDRKNYVQWTAMLTGYAQNGESLKAIQCFKEMRNQGMESNHFTFPSILTACTSISA 251
Score = 45.4 bits (106), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 68/160 (42%), Gaps = 33/160 (20%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVD-------------------- 89
N L+ M+ CG L+ A ++FD M R+ SW +IVGY
Sbjct: 477 NSLITMYAKCGCLEDAIRVFDSMETRNVISWTAIIVGYAQNGLVETGQSYFESMEKVYGI 536
Query: 90 --VADYQEC-ITLFAEMMKRKKGHMLL----VFP-AWIIVCVLKACVCTMNMELGKQVHG 141
+D+ C I L K + LL V P A I +L AC N+ELG++
Sbjct: 537 KPASDHYACMIDLLGRAGKINEAEHLLNRMDVEPDATIWKSLLSACRVHGNLELGERAGK 596
Query: 142 LLFKLGSSRNIS--LTGSLINFYGKFRCLEDADFVFSQLK 179
L KL S ++ L ++ + G++ EDA + +K
Sbjct: 597 NLIKLEPSNSLPYVLLSNMFSVAGRW---EDAAHIRRAMK 633
>gi|297814636|ref|XP_002875201.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297814638|ref|XP_002875202.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297321039|gb|EFH51460.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297321040|gb|EFH51461.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 708
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 92/293 (31%), Positives = 147/293 (50%), Gaps = 12/293 (4%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
L LL M+ CG++ ++ ++F+++ LR+ W MI GYV Y+E + LF M +
Sbjct: 191 LTGLLDMYAKCGEIKSSYKVFEDITLRNVVCWTSMIAGYVKNDLYEEGLVLFNRMRENS- 249
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
++ + ++ AC + GK HG L K G + L SL++ Y K +
Sbjct: 250 ----VLGNEYTYGTLVMACTKLRALHQGKWFHGCLIKSGIELSSCLVTSLLDMYVKCGDI 305
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+A VF++ + V+WTA IV G ++ + F++M IK N T +SVL C
Sbjct: 306 SNARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEALSLFQKMSGVGIKPNCVTIASVLSGC 365
Query: 229 GGVDDDGN--CGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
G V GN GR +H +K+G+ D V LV MY KC RDA+ VFE+ +K+I
Sbjct: 366 GLV---GNLELGRSIHGLSIKVGIW-DTNVANALVHMYAKCYQNRDAKYVFEM-ESEKDI 420
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKI 339
+WN+++ G+ +NG EA + M + + L AC+S+ + I
Sbjct: 421 VAWNSIISGFSQNGSIHEALFLFHRMNTESVMPNGVTVASLFSACASLGSLAI 473
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 86/297 (28%), Positives = 136/297 (45%), Gaps = 12/297 (4%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
+ I+ + + LL M+V CG + AR++F+E D W MIVGY E ++
Sbjct: 282 KSGIELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEALS 341
Query: 99 LFAEMMKRKKGHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGS 157
LF +M + + P + I VL C N+ELG+ +HGL K+G + ++ +
Sbjct: 342 LFQKMSG------VGIKPNCVTIASVLSGCGLVGNLELGRSIHGLSIKVGI-WDTNVANA 394
Query: 158 LINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKN 217
L++ Y K DA +VF + V W + I + G H+ F M E + N
Sbjct: 395 LVHMYAKCYQNRDAKYVFEMESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNTESVMPN 454
Query: 218 SYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCG--LVDMYGKCRLLRDAER 275
T +S+ AC + G +HA VK+G + V G L+D Y KC A
Sbjct: 455 GVTVASLFSACASLGSLA-IGSSLHAYSVKLGFLASSSVHVGTALLDFYAKCGDAESARL 513
Query: 276 VFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+F+ I ++KN +W+AM+ GY + G + + M + ES + ACS
Sbjct: 514 IFDTI-EEKNTITWSAMIGGYGKQGDTKGSLELFEEMLKKQQKPNESTFTSVLSACS 569
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/269 (28%), Positives = 128/269 (47%), Gaps = 8/269 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+L+ ++ S G AR +FD++P DF W V++ Y + E I + +MK G
Sbjct: 92 TKLVSLYGSFGYTKDARLVFDQIPEPDFYLWKVILRCYCLNNESFEVIKFYDLLMKHGFG 151
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ +VF LKAC +++ GK++H + K+ S N+ LTG L++ Y K ++
Sbjct: 152 YDDIVFSK-----ALKACTEVQDLDNGKKIHCQIVKVPSFDNVVLTG-LLDMYAKCGEIK 205
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
+ VF + N V WT+ I + + + F M + N YT+ +++ AC
Sbjct: 206 SSYKVFEDITLRNVVCWTSMIAGYVKNDLYEEGLVLFNRMRENSVLGNEYTYGTLVMACT 265
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ G+ H ++K G+E + L+DMY KC + +A RVF ++ W
Sbjct: 266 KLRALHQ-GKWFHGCLIKSGIELSSCLVTSLLDMYVKCGDISNARRVFNE-HSHVDLVMW 323
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
AM+VGY NG EA M GI+
Sbjct: 324 TAMIVGYTHNGSVNEALSLFQKMSGVGIK 352
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 105/215 (48%), Gaps = 4/215 (1%)
Query: 122 CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH 181
C L CT N++ +Q HG+L G +IS+ L++ YG F +DA VF Q+
Sbjct: 59 CFLLLSKCT-NIDSLRQAHGVLTGNGLMGDISIATKLVSLYGSFGYTKDARLVFDQIPEP 117
Query: 182 NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQM 241
+ +W + C +V + + + + FS LKAC V D N G+++
Sbjct: 118 DFYLWKVILRCYCLNNESFEVIKFYDLLMKHGFGYDDIVFSKALKACTEVQDLDN-GKKI 176
Query: 242 HANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGL 301
H IVK+ D V GL+DMY KC ++ + +VFE I +N+ W +M+ GY++N L
Sbjct: 177 HCQIVKVP-SFDNVVLTGLLDMYAKCGEIKSSYKVFEDIT-LRNVVCWTSMIAGYVKNDL 234
Query: 302 YVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
Y E M+ + + E L +AC+ + A
Sbjct: 235 YEEGLVLFNRMRENSVLGNEYTYGTLVMACTKLRA 269
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 118/254 (46%), Gaps = 19/254 (7%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ C Q A+ +F+ +D +W +I G+ E + LF M
Sbjct: 393 NALVHMYAKCYQNRDAKYVFEMESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNTES-- 450
Query: 110 HMLLVFPAWIIVCVL-KACVCTMNMELGKQVHGLLFKLG--SSRNISLTGSLINFYGKFR 166
V P + V L AC ++ +G +H KLG +S ++ + +L++FY K
Sbjct: 451 ----VMPNGVTVASLFSACASLGSLAIGSSLHAYSVKLGFLASSSVHVGTALLDFYAKCG 506
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
E A +F ++ NT+ W+A I ++G F+EM +++ K N TF+SVL
Sbjct: 507 DAESARLIFDTIEEKNTITWSAMIGGYGKQGDTKGSLELFEEMLKKQQKPNESTFTSVLS 566
Query: 227 AC---GGVDDDGNCGRQMHANIVKIG--LESDEYVQCGLVDMYGKCRLLRDAERVFELIV 281
AC G V++ G++ +++ K S ++ C +VDM + L A + E +
Sbjct: 567 ACSHTGMVNE----GKKYFSSMYKDYNFTPSTKHYTC-MVDMLARAGELEQALDIIEKMP 621
Query: 282 DKKNIASWNAMLVG 295
+ ++ + A L G
Sbjct: 622 IQPDVRCFGAFLHG 635
>gi|225432688|ref|XP_002282622.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14850-like [Vitis vinifera]
Length = 684
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 125/246 (50%), Gaps = 7/246 (2%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+ G + AR++FDEMP R+ +W + V Y + +T F E L+
Sbjct: 152 MYSKAGLTEEARKMFDEMPERNIATWNAYLSNSVLEGRYDDALTAFIEFRHEGWEPNLIT 211
Query: 115 FPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFV 174
F A+ L AC + LG+Q+HG + + G ++S+ LI+FYGK + ++ +
Sbjct: 212 FCAF-----LNACAGASYLRLGRQLHGFVLQSGFEADVSVANGLIDFYGKCHQVGCSEII 266
Query: 175 FSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDD 234
FS + + N V W + IV+ + + F +E I+ + SSVL AC G+
Sbjct: 267 FSGISKPNDVSWCSMIVSYVQNDEEEKACLVFLRARKEGIEPTDFMVSSVLSACAGLSVL 326
Query: 235 GNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLV 294
G+ +H VK + + +V LVDMYGKC + DAER F+ + ++N+ +WNAM+
Sbjct: 327 -EVGKSVHTLAVKACVVGNIFVGSALVDMYGKCGSIEDAERAFDEM-PERNLVTWNAMIG 384
Query: 295 GYIRNG 300
GY G
Sbjct: 385 GYAHQG 390
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 83/300 (27%), Positives = 137/300 (45%), Gaps = 8/300 (2%)
Query: 36 IRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQE 95
I+ N P+ ++ N L+ M+ + ++A+ L P R +W +I G V +
Sbjct: 33 IKTLDNPLPSFIY-NHLVNMYSKLDRPNSAQLLLSLTPNRSVVTWTALIAGSVQNGRFTS 91
Query: 96 CITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLT 155
+ F+ M + FP C KA + +GKQVH L K G ++ +
Sbjct: 92 ALFHFSNMRRDSIQPNDFTFP-----CAFKASGSLRSPLVGKQVHALAVKAGQISDVFVG 146
Query: 156 GSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIK 215
S + Y K E+A +F ++ N W A + N+ EG + F E E +
Sbjct: 147 CSAFDMYSKAGLTEEARKMFDEMPERNIATWNAYLSNSVLEGRYDDALTAFIEFRHEGWE 206
Query: 216 KNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAER 275
N TF + L AC G GRQ+H +++ G E+D V GL+D YGKC + +E
Sbjct: 207 PNLITFCAFLNACAGASYL-RLGRQLHGFVLQSGFEADVSVANGLIDFYGKCHQVGCSEI 265
Query: 276 VFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
+F I K N SW +M+V Y++N +A + GI+ + +++ + AC+ +S
Sbjct: 266 IFSGI-SKPNDVSWCSMIVSYVQNDEEEKACLVFLRARKEGIEPTDFMVSSVLSACAGLS 324
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 78/288 (27%), Positives = 130/288 (45%), Gaps = 18/288 (6%)
Query: 16 LIKECTFQKDSAGAFEL-----LNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFD 70
LI C F AGA L L+ + + + N L+ + C Q+ + +F
Sbjct: 209 LITFCAFLNACAGASYLRLGRQLHGFVLQSGFEADVSVANGLIDFYGKCHQVGCSEIIFS 268
Query: 71 EMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPA-WIIVCVLKACVC 129
+ + SW MIV YV + ++ +F + RK+G + P +++ VL AC
Sbjct: 269 GISKPNDVSWCSMIVSYVQNDEEEKACLVF--LRARKEG----IEPTDFMVSSVLSACAG 322
Query: 130 TMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAK 189
+E+GK VH L K NI + +L++ YGK +EDA+ F ++ N V W A
Sbjct: 323 LSVLEVGKSVHTLAVKACVVGNIFVGSALVDMYGKCGSIEDAERAFDEMPERNLVTWNAM 382
Query: 190 IVNNCREGHFHQVFNDFKEM--GRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIV- 246
I +G F EM G R+ N TF VL AC N G ++ ++
Sbjct: 383 IGGYAHQGQADMAVTLFDEMTCGSHRVAPNYVTFVCVLSACSRAGSV-NVGMEIFESMRG 441
Query: 247 KIGLESD-EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
+ G+E E+ C +VD+ G+ ++ A + + + + ++ W A+L
Sbjct: 442 RYGIEPGAEHYAC-VVDLLGRAGMVEQAYQFIKKMPIRPTVSVWGALL 488
>gi|147812559|emb|CAN70631.1| hypothetical protein VITISV_020725 [Vitis vinifera]
Length = 713
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 80/283 (28%), Positives = 132/283 (46%), Gaps = 7/283 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L M+ CG+L+ LF++M +RD SW +I V + + + F M +
Sbjct: 256 NTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVS 315
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
F A V+ C +E G+Q+H L+ LG + ++S+ S++ Y K L
Sbjct: 316 PNEYTFAA-----VISGCANLARIEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQLT 370
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
+ +F ++ R + V W+ I + GH + F M E K + +SVL ACG
Sbjct: 371 SSSVIFHEMTRRDIVSWSTIIAGYXQGGHVSEAFELLSWMRMEGPKPTEFALASVLSACG 430
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ + G+Q+HA ++ IGLE V L++MY KC + +A R+F+ + +I SW
Sbjct: 431 NMAILEH-GKQLHAYVLSIGLEHTAMVLSALINMYCKCGSIEEASRIFD-AAENDDIVSW 488
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
AM+ GY +G E + G++ + ACS
Sbjct: 489 TAMINGYAEHGYSREVIDLFEKIPRVGLRPDSVTFIGVLSACS 531
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 85/288 (29%), Positives = 139/288 (48%), Gaps = 10/288 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N+ L V G L AR++FD+M +D SW +I GYV+ D E + LF M + + G
Sbjct: 53 NKQLKELVKTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNM-RVESG 111
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
L +I+ KAC ++ G+ +HG K G ++ + +L++ Y K +
Sbjct: 112 ---LRIDPFILSLAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIF 168
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
+ VF ++ N V WTA I R G+ + F EM R R++ +SYTF+ LKAC
Sbjct: 169 EGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACA 228
Query: 230 GVDDDG--NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
D G N GR++HA +K G + +V L MY KC L +FE + +++
Sbjct: 229 ---DSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKM-SMRDVV 284
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
SW ++ ++ G A + M+ S + E + C++++
Sbjct: 285 SWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLA 332
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 77/305 (25%), Positives = 143/305 (46%), Gaps = 7/305 (2%)
Query: 31 ELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDV 90
ELL+ + + ++ + LL M+ G++ R++F EMP+R+ SW +I G V
Sbjct: 136 ELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMRNVVSWTAIITGLVRA 195
Query: 91 ADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSR 150
+E + F+EM + + + + ++ LKAC + + G+++H K G
Sbjct: 196 GYNKEALVYFSEMWRSR-----VEYDSYTFAIALKACADSGALNYGREIHAQAMKKGFDV 250
Query: 151 NISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMG 210
+ + +L Y K LE +F ++ + V WT I + G F M
Sbjct: 251 SSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMR 310
Query: 211 RERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLL 270
+ N YTF++V+ C + G Q+HA I+ +GL + V+ ++ MY KC L
Sbjct: 311 ESDVSPNEYTFAAVISGCANLARI-EWGEQLHALILHLGLAASLSVENSIMTMYAKCGQL 369
Query: 271 RDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIA 330
+ +F + +++I SW+ ++ GY + G EA + L M+ G + E + + A
Sbjct: 370 TSSSVIFHEMT-RRDIVSWSTIIAGYXQGGHVSEAFELLSWMRMEGPKPTEFALASVLSA 428
Query: 331 CSSIS 335
C +++
Sbjct: 429 CGNMA 433
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 74/276 (26%), Positives = 123/276 (44%), Gaps = 31/276 (11%)
Query: 31 ELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDV 90
E L+ + + + +L N ++ M+ CGQL ++ +F EM RD SW+ +I GY
Sbjct: 338 EQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYXQG 397
Query: 91 ADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSR 150
E L + M R +G F + VL AC +E GKQ+H + +G
Sbjct: 398 GHVSEAFELLSWM--RMEGPKPTEFA---LASVLSACGNMAILEHGKQLHAYVLSIGLEH 452
Query: 151 NISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMG 210
+ +LIN Y K +E+A +F + + V WTA I G+ +V + F+++
Sbjct: 453 TAMVLSALINMYCKCGSIEEASRIFDAAENDDIVSWTAMINGYAEHGYSREVIDLFEKIP 512
Query: 211 RERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLE-------------SDEYVQ 257
R ++ +S TF VL AC HA +V +G S E+
Sbjct: 513 RVGLRPDSVTFIGVLSACS------------HAGLVDLGFHYFNAMSKKYQISPSKEHYG 560
Query: 258 CGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
C ++D+ + L DAE + E + ++ W+ +L
Sbjct: 561 C-MIDLLCRAGRLSDAEHMIEAMPFHRDDVVWSTLL 595
>gi|30693150|ref|NP_190486.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75222188|sp|Q5G1T1.1|PP272_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g49170, chloroplastic; AltName: Full=Protein EMBRYO
DEFECTIVE 2261; Flags: Precursor
gi|58013018|gb|AAW62962.1| embryo-defective 2261 [Arabidopsis thaliana]
gi|58013020|gb|AAW62963.1| embryo-defective 2261 [Arabidopsis thaliana]
gi|332644986|gb|AEE78507.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 850
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 89/290 (30%), Positives = 144/290 (49%), Gaps = 16/290 (5%)
Query: 52 LLLMHVSC---GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADY-QECITLFAEMMKRK 107
L+ M+ C G +D R++FD M SW +I GY+ + E I LF+EM+
Sbjct: 308 LVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMIT-- 365
Query: 108 KGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166
+GH V P + KAC + +GKQV G FK G + N S+ S+I+ + K
Sbjct: 366 QGH---VEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSD 422
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
+EDA F L N V + + CR +F Q F E+ + +++TF+S+L
Sbjct: 423 RMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLL- 481
Query: 227 ACGGVDDDGNC--GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
GV + G+ G Q+H+ +VK+GL ++ V L+ MY KC + A RVF + + +
Sbjct: 482 --SGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFM-ENR 538
Query: 285 NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
N+ SW +M+ G+ ++G + + M G++ E + ACS +
Sbjct: 539 NVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHV 588
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 90/346 (26%), Positives = 162/346 (46%), Gaps = 26/346 (7%)
Query: 7 PITTDMYTCLIKECTFQKDSAGAFELLNHIRKRV---NIKPTLLFLNRLLLMHVSCGQLD 63
P+ + ++ L+K C +D F L + R+ +I+P + N L+ ++ G
Sbjct: 59 PMDSVTFSSLLKSCIRARD----FRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSA 114
Query: 64 TARQLFDEMPL---RDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWII 120
A +F+ M RD SW+ M+ Y + + I +F E ++ + LV +
Sbjct: 115 KAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLE-----LGLVPNDYCY 169
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLGS-SRNISLTGSLINFYGKFR-CLEDADFVFSQL 178
V++AC + + +G+ G L K G ++ + SLI+ + K E+A VF ++
Sbjct: 170 TAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKM 229
Query: 179 KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCG 238
N V WT I + G + F +M + + +T SSV AC + ++ + G
Sbjct: 230 SELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAEL-ENLSLG 288
Query: 239 RQMHANIVKIGLESDEYVQCGLVDMYGKCRL---LRDAERVFELIVDKKNIASWNAMLVG 295
+Q+H+ ++ GL D V+C LVDMY KC + D +VF+ + D ++ SW A++ G
Sbjct: 289 KQLHSWAIRSGLVDD--VECSLVDMYAKCSADGSVDDCRKVFDRMED-HSVMSWTALITG 345
Query: 296 YIRN-GLYVEATKFLYLMKASG-IQIQESLINDLRIACSSISASKI 339
Y++N L EA M G ++ + AC ++S ++
Sbjct: 346 YMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRV 391
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 61/282 (21%), Positives = 123/282 (43%), Gaps = 8/282 (2%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
++ K C D ++L KR + N ++ M V +++ A++ F+ +
Sbjct: 376 FSSAFKACGNLSDPRVGKQVLGQAFKR-GLASNSSVANSVISMFVKSDRMEDAQRAFESL 434
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN 132
++ S+ + G ++++ L +E+ +R+ G A+ +L +
Sbjct: 435 SEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELG-----VSAFTFASLLSGVANVGS 489
Query: 133 MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192
+ G+Q+H + KLG S N + +LI+ Y K ++ A VF+ ++ N + WT+ I
Sbjct: 490 IRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITG 549
Query: 193 NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLES 252
+ G +V F +M E +K N T+ ++L AC V R ++ ++
Sbjct: 550 FAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKP 609
Query: 253 D-EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
E+ C +VD+ + LL DA + + ++ W L
Sbjct: 610 KMEHYAC-MVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFL 650
>gi|302759917|ref|XP_002963381.1| hypothetical protein SELMODRAFT_80412 [Selaginella moellendorffii]
gi|300168649|gb|EFJ35252.1| hypothetical protein SELMODRAFT_80412 [Selaginella moellendorffii]
Length = 860
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 98/343 (28%), Positives = 163/343 (47%), Gaps = 26/343 (7%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCG 60
MD + + C++ C KD ++ IR+ V T+L N LL ++ CG
Sbjct: 21 MDERGVDPNDKTFACVLSACAGLKDMERGKKVHRRIRESVARVDTVL-QNALLNLYAKCG 79
Query: 61 QLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI- 119
L+ +R++F+ M R +W MI YV +QE + F M P+ I
Sbjct: 80 DLEESRRIFEAMERRTVATWNTMITAYVQHDFFQEALEAFRRMDAP---------PSSIT 130
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNIS----LTGSLINFYGKFRCLEDADFVF 175
VL AC ++E GK +H + GSS I L SL+ YGK LEDA+ VF
Sbjct: 131 FTSVLGACCSPDDLETGKAIHRQIG--GSSPQIQADEILQNSLVTMYGKCGSLEDAERVF 188
Query: 176 SQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRE-RIKKNSYTFSSVLKACGGVDDD 234
++R N WTA I + G+ + F +M E R++ + T++ VL AC + D
Sbjct: 189 HGIRRKNAFSWTAMITAYAQNGYERRAIEVFGDMMSEGRVEPDPITYAGVLTACSTLGDL 248
Query: 235 GNCGRQMHANIVKI---GLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
G ++HA I +I GLE D+ +Q G++ ++ +C L +F+ + + + +W
Sbjct: 249 -ETGMRIHALIHRIYTLGLEYDDVLQDGILSLHARCGSLVGTREMFDRM-PHRTVVTWTT 306
Query: 292 MLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
M+ Y + G +EA + + M I+ + ++++ ACS +
Sbjct: 307 MIAAYNQRGYSMEALELYHCMD---IEPDDIALSNVLQACSRL 346
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 80/255 (31%), Positives = 119/255 (46%), Gaps = 13/255 (5%)
Query: 83 MIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGL 142
MI Y ++E + L+ EM +R F CVL AC +ME GK+VH
Sbjct: 1 MISAYAQKGYHREALELYEEMDERGVDPNDKTF-----ACVLSACAGLKDMERGKKVHRR 55
Query: 143 LFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQV 202
+ + + + L +L+N Y K LE++ +F ++R W I + F +
Sbjct: 56 IRESVARVDTVLQNALLNLYAKCGDLEESRRIFEAMERRTVATWNTMITAYVQHDFFQEA 115
Query: 203 FNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANI--VKIGLESDEYVQCGL 260
F+ M +S TF+SVL AC DD G+ +H I +++DE +Q L
Sbjct: 116 LEAFRRMD---APPSSITFTSVLGACCS-PDDLETGKAIHRQIGGSSPQIQADEILQNSL 171
Query: 261 VDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASG-IQI 319
V MYGKC L DAERVF I +KN SW AM+ Y +NG A + M + G ++
Sbjct: 172 VTMYGKCGSLEDAERVFHGI-RRKNAFSWTAMITAYAQNGYERRAIEVFGDMMSEGRVEP 230
Query: 320 QESLINDLRIACSSI 334
+ ACS++
Sbjct: 231 DPITYAGVLTACSTL 245
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 80/284 (28%), Positives = 127/284 (44%), Gaps = 12/284 (4%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
+L +H CG L R++FD MP R +W MI Y E + L+ H
Sbjct: 276 ILSLHARCGSLVGTREMFDRMPHRTVVTWTTMIAAYNQRGYSMEALELY---------HC 326
Query: 112 LLVFPAWIIVC-VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
+ + P I + VL+AC N+E G+ VH + ++ + L++ Y K L +
Sbjct: 327 MDIEPDDIALSNVLQACSRLKNLEQGRAVHSRIASRDFEPSLMVQTLLVDMYVKCGDLAE 386
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
A F K + + WT+ I E + F M E ++ NS TF +V+ AC
Sbjct: 387 ARRTFDGFKARDVISWTSLITAYSHENFGREALEVFHSMELEGVEPNSITFCTVIDACSR 446
Query: 231 VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWN 290
+ GR +H+ +V G SDE+V LV MY K + A VF+ I K+ SW
Sbjct: 447 LSSLLP-GRALHSRVVATGHISDEFVGNALVSMYSKFGRVDFARMVFDSIPVKR-YPSWR 504
Query: 291 AMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
MLV +NG EA + + G + + + ++C+++
Sbjct: 505 VMLVALTQNGHSHEALEMYSRIHLEGFRPGSPIFSAALVSCTAL 548
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 84/317 (26%), Positives = 141/317 (44%), Gaps = 15/317 (4%)
Query: 5 CLPITTD--MYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQL 62
C+ I D + +++ C+ K+ + + I R + +P+L+ L+ M+V CG L
Sbjct: 326 CMDIEPDDIALSNVLQACSRLKNLEQGRAVHSRIASR-DFEPSLMVQTLLVDMYVKCGDL 384
Query: 63 DTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVC 122
AR+ FD RD SW +I Y +E + +F M + V P I C
Sbjct: 385 AEARRTFDGFKARDVISWTSLITAYSHENFGREALEVFHSM------ELEGVEPNSITFC 438
Query: 123 -VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH 181
V+ AC ++ G+ +H + G + + +L++ Y KF ++ A VF +
Sbjct: 439 TVIDACSRLSSLLPGRALHSRVVATGHISDEFVGNALVSMYSKFGRVDFARMVFDSIPVK 498
Query: 182 NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQM 241
W +V + GH H+ + + E + S FS+ L +C ++D R +
Sbjct: 499 RYPSWRVMLVALTQNGHSHEALEMYSRIHLEGFRPGSPIFSAALVSCTALEDVSR-ARAI 557
Query: 242 HANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGL 301
H I D + L+++Y KC L A VF+ + +K + SW M+ GY +NG
Sbjct: 558 HGVIKSSDFYPDLVLSNVLMNVYAKCGELEKARLVFDQMTEKNEV-SWTTMIGGYAQNGR 616
Query: 302 YVEATKFLYLMKASGIQ 318
EA L L KA +Q
Sbjct: 617 PAEA---LELYKAMDVQ 630
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 74/288 (25%), Positives = 131/288 (45%), Gaps = 16/288 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ G++D AR +FD +P++ + SW VM+V E + +++ +
Sbjct: 473 NALVSMYSKFGRVDFARMVFDSIPVKRYPSWRVMLVALTQNGHSHEALEMYSRI------ 526
Query: 110 HMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
H+ P + I L +C ++ + +HG++ ++ L+ L+N Y K L
Sbjct: 527 HLEGFRPGSPIFSAALVSCTALEDVSRARAIHGVIKSSDFYPDLVLSNVLMNVYAKCGEL 586
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
E A VF Q+ N V WT I + G + +K M ++ N F V+ +C
Sbjct: 587 EKARLVFDQMTEKNEVSWTTMIGGYAQNGRPAEALELYKAMD---VQPNFIAFVPVISSC 643
Query: 229 GGVDDDGNC--GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
D G G+++HA + GL+++E + LV+MY KC L A F+ +
Sbjct: 644 A---DLGALVEGQRVHARLSDAGLQNNEVIVTALVNMYAKCGKLGLAREFFDSTY-CPDA 699
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
+WN+M Y + G + + M G+Q + + +ACS +
Sbjct: 700 GAWNSMATAYAQFGHGSQVLELYREMCLQGVQPNGITLLSVLVACSHM 747
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 69/272 (25%), Positives = 122/272 (44%), Gaps = 13/272 (4%)
Query: 10 TDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLF 69
+ +++ + CT +D + A ++ + K + P L+ N L+ ++ CG+L+ AR +F
Sbjct: 535 SPIFSAALVSCTALEDVSRA-RAIHGVIKSSDFYPDLVLSNVLMNVYAKCGELEKARLVF 593
Query: 70 DEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI-IVCVLKACV 128
D+M ++ SW MI GY E + L+ M V P +I V V+ +C
Sbjct: 594 DQMTEKNEVSWTTMIGGYAQNGRPAEALELYKAMD---------VQPNFIAFVPVISSCA 644
Query: 129 CTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTA 188
+ G++VH L G N + +L+N Y K L A F + W +
Sbjct: 645 DLGALVEGQRVHARLSDAGLQNNEVIVTALVNMYAKCGKLGLAREFFDSTYCPDAGAWNS 704
Query: 189 KIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKI 248
+ GH QV ++EM + ++ N T SVL AC + C + +
Sbjct: 705 MATAYAQFGHGSQVLELYREMCLQGVQPNGITLLSVLVACSHMGMLEECEHRFECMVADH 764
Query: 249 GL-ESDEYVQCGLVDMYGKCRLLRDAERVFEL 279
G+ + E+ C + D+ G+ L +AE+V ++
Sbjct: 765 GIAPTSEHYSC-MTDLLGRSGRLEEAEKVVKM 795
>gi|302803540|ref|XP_002983523.1| hypothetical protein SELMODRAFT_118230 [Selaginella moellendorffii]
gi|300148766|gb|EFJ15424.1| hypothetical protein SELMODRAFT_118230 [Selaginella moellendorffii]
Length = 506
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 88/284 (30%), Positives = 135/284 (47%), Gaps = 16/284 (5%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M CG L +R++FD+ +D W MIV Y +E I LF M V
Sbjct: 1 MFAKCGSLKESREVFDDCRWKDVLFWNSMIVAYSQSGHPREAIELFKSMGSSSP----PV 56
Query: 115 FP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADF 173
P A VL AC +E GK+VH + G + + SL+N Y K + +A
Sbjct: 57 EPNAITYTTVLAACSAVEALEQGKEVHRQMVDAGFQFDAAAENSLVNMYAKCGSITEARE 116
Query: 174 VFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC---GG 230
VF +K+ V WT I R+GH + + +++MG E ++ N TF+SVL AC G
Sbjct: 117 VFDGMKQRTVVSWTGIISAYVRKGHPREALDLYRKMGSEGVEPNGITFASVLSACSSLGA 176
Query: 231 VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWN 290
+++ G+ +HA + G + D V LV +YGKC + A +VF+ + +N+ SW
Sbjct: 177 LEE----GKAVHAQMKAAGYKPDLAVANALVSLYGKCGSVDSARKVFDRM-KIRNVVSWT 231
Query: 291 AMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
AM+ Y + EA + L KA + + + AC+S+
Sbjct: 232 AMISSYAHHRHSEEA---IQLYKAMDVAPNAVTLASVLSACASL 272
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 84/287 (29%), Positives = 136/287 (47%), Gaps = 16/287 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ CG + AR++FD M R SW +I YV +E + L+ RK G
Sbjct: 99 NSLVNMYAKCGSITEAREVFDGMKQRTVVSWTGIISAYVRKGHPREALDLY-----RKMG 153
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ VL AC +E GK VH + G ++++ +L++ YGK ++
Sbjct: 154 SEGVEPNGITFASVLSACSSLGALEEGKAVHAQMKAAGYKPDLAVANALVSLYGKCGSVD 213
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A VF ++K N V WTA I + H + +K M + N+ T +SVL AC
Sbjct: 214 SARKVFDRMKIRNVVSWTAMISSYAHHRHSEEAIQLYKAM---DVAPNAVTLASVLSACA 270
Query: 230 GVDDDGNC--GRQMHANIVK--IGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
+ GN GR +H + GL +DE +Q L++MY KC A ++F+ + +
Sbjct: 271 SL---GNAEEGRAVHEKLASTTTGLATDEVLQNALLNMYAKCGDGDAARKIFDAMAVRDT 327
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+ SW+ ++ Y ++G EA + M+ G+Q + + ACS
Sbjct: 328 M-SWSTLIAAYTQHGRGGEAVEMCRSMELEGVQASSFIYGTVLTACS 373
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 88/194 (45%), Gaps = 12/194 (6%)
Query: 38 KRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECI 97
K KP L N L+ ++ CG +D+AR++FD M +R+ SW MI Y +E I
Sbjct: 188 KAAGYKPDLAVANALVSLYGKCGSVDSARKVFDRMKIRNVVSWTAMISSYAHHRHSEEAI 247
Query: 98 TLFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFK--LGSSRNISL 154
L+ M V P A + VL AC N E G+ VH L G + + L
Sbjct: 248 QLYKAMD---------VAPNAVTLASVLSACASLGNAEEGRAVHEKLASTTTGLATDEVL 298
Query: 155 TGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERI 214
+L+N Y K + A +F + +T+ W+ I + G + + M E +
Sbjct: 299 QNALLNMYAKCGDGDAARKIFDAMAVRDTMSWSTLIAAYTQHGRGGEAVEMCRSMELEGV 358
Query: 215 KKNSYTFSSVLKAC 228
+ +S+ + +VL AC
Sbjct: 359 QASSFIYGTVLTAC 372
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 4/178 (2%)
Query: 161 FYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRER--IKKNS 218
+ K L+++ VF + + + W + IV + GH + FK MG ++ N+
Sbjct: 1 MFAKCGSLKESREVFDDCRWKDVLFWNSMIVAYSQSGHPREAIELFKSMGSSSPPVEPNA 60
Query: 219 YTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE 278
T+++VL AC V+ G+++H +V G + D + LV+MY KC + +A VF+
Sbjct: 61 ITYTTVLAACSAVEALEQ-GKEVHRQMVDAGFQFDAAAENSLVNMYAKCGSITEAREVFD 119
Query: 279 LIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+ ++ + SW ++ Y+R G EA M + G++ + ACSS+ A
Sbjct: 120 GM-KQRTVVSWTGIISAYVRKGHPREALDLYRKMGSEGVEPNGITFASVLSACSSLGA 176
>gi|147801010|emb|CAN60118.1| hypothetical protein VITISV_016374 [Vitis vinifera]
Length = 1166
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 82/266 (30%), Positives = 144/266 (54%), Gaps = 10/266 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ G ++ AR +FDEM R+ SW+ M+ GYV V Y+E + LF +M
Sbjct: 133 NTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWG---- 188
Query: 110 HMLLVFP-AWIIVCVLKACVCTMNM-ELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
L V P +++ ++ AC + M + G QVHG + K G ++ + +L++FYG
Sbjct: 189 --LGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGL 246
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
+ +A +F ++ HN V WT+ +V G+ +V N ++ M +E + N TF++V +
Sbjct: 247 VYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSS 306
Query: 228 CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
CG ++D G Q+ +I++ G E V L+ M+ + +A VF+ + ++ +I
Sbjct: 307 CGLLEDQ-VLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHM-NECDII 364
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMK 313
SWNAM+ Y +GL E+ + + M+
Sbjct: 365 SWNAMISAYAHHGLCRESLRCFHWMR 390
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 76/272 (27%), Positives = 125/272 (45%), Gaps = 6/272 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N LL ++ G+ + A +F M RD SW M+ YV + + + AE+++ K
Sbjct: 437 NTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKV 496
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ F + + C C+ K VH L+ G + + +L+ YGK +
Sbjct: 497 MNHVTFASALAACSNPECLIE-----SKIVHALIIVAGFHDFLIVGNALVTMYGKLGMMM 551
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
+A V + + + V W A I + ++ +K + + I N T SVL AC
Sbjct: 552 EAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSVLGACS 611
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
DD G +HA+IV G ESD+YV+ L+ MY KC L + +F+ + +K I +W
Sbjct: 612 APDDLLKHGMPIHAHIVLTGFESDDYVKNSLITMYAKCGDLNSSNYIFDGLGNKSPI-TW 670
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQE 321
NAM+ +G EA K M+ G+ + +
Sbjct: 671 NAMVAANAHHGCGEEALKIFGEMRNVGVNLDQ 702
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 74/292 (25%), Positives = 135/292 (46%), Gaps = 16/292 (5%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L+ N L+ M+ G + A+++ MP D +W +I G+ + + E + + +
Sbjct: 534 LIVGNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAYK--LI 591
Query: 106 RKKGHMLLVFPAWII--VCVLKACVCTMNM-ELGKQVHGLLFKLGSSRNISLTGSLINFY 162
R+KG PA I V VL AC ++ + G +H + G + + SLI Y
Sbjct: 592 REKG-----IPANYITMVSVLGACSAPDDLLKHGMPIHAHIVLTGFESDDYVKNSLITMY 646
Query: 163 GKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFS 222
K L ++++F L + + W A + N G + F EM + + ++FS
Sbjct: 647 AKCGDLNSSNYIFDGLGNKSPITWNAMVAANAHHGCGEEALKIFGEMRNVGVNLDQFSFS 706
Query: 223 SVLKACG--GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELI 280
L A V ++ G+Q+H ++K+G ESD +V +DMYGKC + D ++
Sbjct: 707 GGLAATANLAVLEE---GQQLHGLVIKLGFESDLHVTNAAMDMYGKCGEMHDVLKMLPQP 763
Query: 281 VDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+++ + SWN ++ + R+G + +A + + M G + L AC+
Sbjct: 764 INRSRL-SWNILISAFARHGCFQKARETFHEMLKLGPKPDHVTFVSLLSACN 814
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 94/196 (47%), Gaps = 1/196 (0%)
Query: 136 GKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCR 195
GK +H + I T +LIN Y KF +E A +VF +++ N W+ + R
Sbjct: 113 GKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGYVR 172
Query: 196 EGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEY 255
G + + F +M ++ N + +S++ AC + G Q+H +VK G+ D Y
Sbjct: 173 VGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVY 232
Query: 256 VQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKAS 315
V LV YG L+ +A+++FE + D N+ SW +++VGY +G E M+
Sbjct: 233 VGTALVHFYGSIGLVYNAQKLFEEMPD-HNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQE 291
Query: 316 GIQIQESLINDLRIAC 331
G+ ++ + +C
Sbjct: 292 GVSGNQNTFATVTSSC 307
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 81/331 (24%), Positives = 146/331 (44%), Gaps = 24/331 (7%)
Query: 11 DMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFD 70
+ + + C +D +++L HI + + ++ N L+ M S ++ A +FD
Sbjct: 298 NTFATVTSSCGLLEDQVLGYQVLGHI-IQYGFEDSVSVANSLISMFSSFSSVEEACYVFD 356
Query: 71 EMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCT 130
M D SW MI Y +E + F M H+ + + +L C
Sbjct: 357 HMNECDIISWNAMISAYAHHGLCRESLRCFHWMR-----HLHNETNSTTLSSLLSVCSSV 411
Query: 131 MNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKI 190
N++ G+ +HGL+ KLG N+ + +L+ Y + EDA+ VF + + + W + +
Sbjct: 412 DNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMM 471
Query: 191 V-----NNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC---GRQMH 242
C +G ++ + +MG+ N TF+S L AC + C + +H
Sbjct: 472 ACYVQDGKCLDG--LKILAELLQMGK---VMNHVTFASALAAC----SNPECLIESKIVH 522
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
A I+ G V LV MYGK ++ +A++V + + + +WNA++ G+ N
Sbjct: 523 ALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTMPQPDRV-TWNALIGGHAENEEP 581
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIACSS 333
EA K L++ GI + + ACS+
Sbjct: 582 NEAVKAYKLIREKGIPANYITMVSVLGACSA 612
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 108/248 (43%), Gaps = 9/248 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ CG L+++ +FD + + +W M+ +E + +F EM R G
Sbjct: 640 NSLITMYAKCGDLNSSNYIFDGLGNKSPITWNAMVAANAHHGCGEEALKIFGEM--RNVG 697
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
L F L A +E G+Q+HGL+ KLG ++ +T + ++ YGK +
Sbjct: 698 VNLDQFS---FSGGLAATANLAVLEEGQQLHGLVIKLGFESDLHVTNAAMDMYGKCGEMH 754
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC- 228
D + Q + + W I R G F + F EM + K + TF S+L AC
Sbjct: 755 DVLKMLPQPINRSRLSWNILISAFARHGCFQKARETFHEMLKLGPKPDHVTFVSLLSACN 814
Query: 229 -GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
GG+ D+G + E+ C ++D+ G+ L AE + + N
Sbjct: 815 HGGLVDEGLAYYDSMTREFGV-FPGIEHCVC-IIDLLGRSGRLSHAEGFIKEMPVPPNDL 872
Query: 288 SWNAMLVG 295
+W ++L
Sbjct: 873 AWRSLLAA 880
>gi|302799100|ref|XP_002981309.1| hypothetical protein SELMODRAFT_114322 [Selaginella moellendorffii]
gi|300150849|gb|EFJ17497.1| hypothetical protein SELMODRAFT_114322 [Selaginella moellendorffii]
Length = 682
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 88/328 (26%), Positives = 157/328 (47%), Gaps = 17/328 (5%)
Query: 14 TCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMP 73
TC+++ C+ + +L + + ++ +N L+ M+ CG+L+ +R +F +
Sbjct: 168 TCVLESCSGDRQG----KLFHDRVLDLGLQGDEFLMNSLVKMYARCGRLEESRLVFRAID 223
Query: 74 LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAW---IIVCVLKACVCT 130
+D SW VMI + +E + L E+ L FP + V+ AC C
Sbjct: 224 QKDIISWNVMISLEARLGSSEEAVELLREID-------LEGFPEPDEVTFISVVDACSCL 276
Query: 131 MNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKI 190
+++L + L+ G ++ L +++N +GK CL+ A F +L N V W I
Sbjct: 277 GDLDLCFTIQELVSSAGFDDDLLLGNAVVNMFGKSGCLDAARATFDRLPVKNVVSWNCLI 336
Query: 191 VNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGL 250
+ + F++M +E +K NS TF S+L AC + + GR++H I GL
Sbjct: 337 SGYAQNLQGRRCLELFRQMDQEGVKANSVTFVSLLDACSTIPAL-DFGRELHLRITAAGL 395
Query: 251 ESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK--KNIASWNAMLVGYIRNGLYVEATKF 308
E V L++MYGKC+ L+ A+ + E ++ +WNA+ Y +NG +EA +
Sbjct: 396 ELHTVVATALINMYGKCQELQLAQELLERYQSTGLRDSVTWNAIAAAYAQNGHPLEALEL 455
Query: 309 LYLMKASGIQIQESLINDLRIACSSISA 336
+ M+ G++ QE+ + AC S+
Sbjct: 456 FWRMQQQGVRAQEATFVTILDACGDSSS 483
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 122/260 (46%), Gaps = 15/260 (5%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M CG ++ AR++F + + SW +++ E + L M+ ++
Sbjct: 1 MFGKCGDIEVAREIFHGLWRPNLFSWTMILAACARNGRNLEALLLVRRMIGEGARPDVVC 60
Query: 115 FPAWIIVCVLKACVCTMNMELGKQVHGLLFKLG-SSRNISLTGSLINFYGKFRCLEDADF 173
F V +L C T ++E GK H + G S + L +LIN YGK R L+ A
Sbjct: 61 F-----VTILDLCAATADLEQGKVAHAWILACGVESSSRVLGNALINMYGKCRNLDLARA 115
Query: 174 VFSQLKRHN----TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
F +++ + V W + + G+ + F+EM E IK +S T + VL++C
Sbjct: 116 QFDRMEHQDHGRDVVTWNSLLAAFTHNGYLEEAARLFQEMEVEGIKPSSVTLTCVLESCS 175
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
G G+ H ++ +GL+ DE++ LV MY +C L ++ VF I D+K+I SW
Sbjct: 176 G----DRQGKLFHDRVLDLGLQGDEFLMNSLVKMYARCGRLEESRLVFRAI-DQKDIISW 230
Query: 290 NAMLVGYIRNGLYVEATKFL 309
N M+ R G EA + L
Sbjct: 231 NVMISLEARLGSSEEAVELL 250
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 81/183 (44%), Gaps = 5/183 (2%)
Query: 161 FYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYT 220
+GK +E A +F L R N WT + R G + + M E + +
Sbjct: 1 MFGKCGDIEVAREIFHGLWRPNLFSWTMILAACARNGRNLEALLLVRRMIGEGARPDVVC 60
Query: 221 FSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYV-QCGLVDMYGKCRLLRDAERVFEL 279
F ++L C D G+ HA I+ G+ES V L++MYGKCR L A F+
Sbjct: 61 FVTILDLCAATADLEQ-GKVAHAWILACGVESSSRVLGNALINMYGKCRNLDLARAQFDR 119
Query: 280 IVDK---KNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+ + +++ +WN++L + NG EA + M+ GI+ + + +CS
Sbjct: 120 MEHQDHGRDVVTWNSLLAAFTHNGYLEEAARLFQEMEVEGIKPSSVTLTCVLESCSGDRQ 179
Query: 337 SKI 339
K+
Sbjct: 180 GKL 182
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/253 (22%), Positives = 105/253 (41%), Gaps = 27/253 (10%)
Query: 52 LLLMHVSCGQLDTARQL---FDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
L+ M+ C +L A++L + LRD +W + Y E + LF M ++
Sbjct: 405 LINMYGKCQELQLAQELLERYQSTGLRDSVTWNAIAAAYAQNGHPLEALELFWRMQQQGV 464
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGL-LFKLGSSRNISLTGSLINFYGKFRC 167
F V +L AC + ++ HG + KL S + ++ G+L+ Y K C
Sbjct: 465 RAQEATF-----VTILDACGDSSSL----LAHGRSIAKLSSWTSDAIKGALLGMYSKCGC 515
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
++DA L + WT+ + G + +M + + + FS+V+ A
Sbjct: 516 VDDALAALQSLSSRGLLAWTSMLAAYAHVGRASEALRVLGQMQHDGVVPDDVAFSAVVFA 575
Query: 228 CGGVDDDGNCGRQMHANIVKIGLESDEY---VQCGL----VDMYGKCRLLRDAERVFELI 280
C +H +V++ S +Y + GL VD+ + L++AE + +
Sbjct: 576 CSHAG-------LLHEALVRLAWVSGDYGTAMGAGLYECVVDVLARMGRLQEAEELMHAM 628
Query: 281 VDKKNIASWNAML 293
+ + +W A+L
Sbjct: 629 PYEPDSLAWMALL 641
>gi|77554180|gb|ABA96976.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 780
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 86/295 (29%), Positives = 144/295 (48%), Gaps = 17/295 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ + +CG+ AR++FDEMP RD SW ++ ++ + + MM+
Sbjct: 158 NTLVAFYAACGKACDARRVFDEMPERDVVSWNSLVSAFLVNGMFHDARRALVSMMRSG-- 215
Query: 110 HMLLVFPAWI--IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
FP + +V V+ AC + G +H L K+G + ++L +L++ YGKF
Sbjct: 216 -----FPLNVASLVSVVPACGTEQEEKFGLSIHALAVKVGLNTMVNLANALVDMYGKFGD 270
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
+E + VF + N V W + I G + V F++M + S T SS+L A
Sbjct: 271 VEASMQVFDGMLEQNEVSWNSAIGCFLNAGFYGDVLRMFRKMSEHNVMPGSITLSSLLPA 330
Query: 228 ---CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
G D GR++H +K ++ D +V LVDMY K L A +FE + D +
Sbjct: 331 LVELGSFD----LGREVHGYSIKRAMDLDIFVANSLVDMYAKFGSLEKASTIFEQMKD-R 385
Query: 285 NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKI 339
N+ SWNAM+ ++NG EA + + M+ SG + ++ AC+ +++ K+
Sbjct: 386 NVVSWNAMIANLVQNGAETEAFRLVTDMQKSGECPNSITLVNVLPACARMASLKM 440
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 87/334 (26%), Positives = 155/334 (46%), Gaps = 11/334 (3%)
Query: 6 LPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTA 65
P+ ++ C +++ + + + +V + + N L+ M+ G ++ +
Sbjct: 216 FPLNVASLVSVVPACGTEQEEKFGLSI-HALAVKVGLNTMVNLANALVDMYGKFGDVEAS 274
Query: 66 RQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVC-VL 124
Q+FD M ++ SW I +++ Y + + +F +M + V P I + +L
Sbjct: 275 MQVFDGMLEQNEVSWNSAIGCFLNAGFYGDVLRMFRKMSEHN------VMPGSITLSSLL 328
Query: 125 KACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTV 184
A V + +LG++VHG K +I + SL++ Y KF LE A +F Q+K N V
Sbjct: 329 PALVELGSFDLGREVHGYSIKRAMDLDIFVANSLVDMYAKFGSLEKASTIFEQMKDRNVV 388
Query: 185 VWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHAN 244
W A I N + G + F +M + NS T +VL AC + G+Q+HA
Sbjct: 389 SWNAMIANLVQNGAETEAFRLVTDMQKSGECPNSITLVNVLPACARMASL-KMGKQIHAW 447
Query: 245 IVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVE 304
++ GL D ++ L+DMY KC L A +FE +K+ S+N +++GY ++ E
Sbjct: 448 SIRRGLMFDLFISNALIDMYSKCGQLSLARNIFER--SEKDDVSYNTLILGYSQSPWCFE 505
Query: 305 ATKFLYLMKASGIQIQESLINDLRIACSSISASK 338
+ M++ GI AC+++S K
Sbjct: 506 SLLLFKQMRSVGIDYDAVSFMGALSACTNLSVFK 539
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 77/284 (27%), Positives = 134/284 (47%), Gaps = 10/284 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ G L+ A +F++M R+ SW MI V E L +M K +
Sbjct: 360 NSLVDMYAKFGSLEKASTIFEQMKDRNVVSWNAMIANLVQNGAETEAFRLVTDMQKSGE- 418
Query: 110 HMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
P I +V VL AC ++++GKQ+H + G ++ ++ +LI+ Y K L
Sbjct: 419 -----CPNSITLVNVLPACARMASLKMGKQIHAWSIRRGLMFDLFISNALIDMYSKCGQL 473
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
A +F + ++ + V + I+ + + FK+M I ++ +F L AC
Sbjct: 474 SLARNIFERSEK-DDVSYNTLILGYSQSPWCFESLLLFKQMRSVGIDYDAVSFMGALSAC 532
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
+ + G+++H +V+ L ++ L+D+Y K +L A ++F I KK++AS
Sbjct: 533 TNLSVFKH-GKEIHCVLVRRLLSGHPFLSNSLLDLYTKGGMLVTASKIFNKIT-KKDVAS 590
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
WN M++GY +G A + LMK G+ + ACS
Sbjct: 591 WNTMILGYGMHGQIDIAFELFELMKGDGLDYDHVSYIAVLAACS 634
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 112/250 (44%), Gaps = 11/250 (4%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L N L+ M+ CGQL AR +F E +D S+ +I+GY E + LF +M
Sbjct: 457 LFISNALIDMYSKCGQLSLARNIF-ERSEKDDVSYNTLILGYSQSPWCFESLLLFKQM-- 513
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
R G + + A + L AC + GK++H +L + S + L+ SL++ Y K
Sbjct: 514 RSVG---IDYDAVSFMGALSACTNLSVFKHGKEIHCVLVRRLLSGHPFLSNSLLDLYTKG 570
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
L A +F+++ + + W I+ G F F+ M + + + ++ +VL
Sbjct: 571 GMLVTASKIFNKITKKDVASWNTMILGYGMHGQIDIAFELFELMKGDGLDYDHVSYIAVL 630
Query: 226 KAC--GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
AC GG+ D G++ + +V +E + +VD+ G+ L + +
Sbjct: 631 AACSHGGLVDK---GKKYFSQMVAQNIEPQQMHYACMVDLLGRAGQLSKCAEIIRDMPFP 687
Query: 284 KNIASWNAML 293
N W A+L
Sbjct: 688 ANSDVWGALL 697
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 60/263 (22%), Positives = 109/263 (41%), Gaps = 7/263 (2%)
Query: 42 IKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNS--WAVMIVGYVDVADYQECITL 99
+ +L LLL + + L +AR + PLR ++ W + + E + +
Sbjct: 45 LATSLPLAGALLLSYAALSDLASARLVLRHHPLRLRSAFLWNSLSRALSSASLPSEALRV 104
Query: 100 FAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLI 159
+ M++ FP A + G ++H + G ++ +L+
Sbjct: 105 YNLMLRSAVRPDDRTFP---FALHAAAAAVASAEDKGLELHASALRRGHLADVFTGNTLV 161
Query: 160 NFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSY 219
FY DA VF ++ + V W + + G FH M R N
Sbjct: 162 AFYAACGKACDARRVFDEMPERDVVSWNSLVSAFLVNGMFHDARRALVSMMRSGFPLNVA 221
Query: 220 TFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFEL 279
+ SV+ AC G + + G +HA VK+GL + + LVDMYGK + + +VF+
Sbjct: 222 SLVSVVPAC-GTEQEEKFGLSIHALAVKVGLNTMVNLANALVDMYGKFGDVEASMQVFDG 280
Query: 280 IVDKKNIASWNAMLVGYIRNGLY 302
++++ + SWN+ + ++ G Y
Sbjct: 281 MLEQNEV-SWNSAIGCFLNAGFY 302
>gi|359494657|ref|XP_002264130.2| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
[Vitis vinifera]
Length = 1724
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 82/266 (30%), Positives = 144/266 (54%), Gaps = 10/266 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ G ++ AR +FDEM R+ SW+ M+ GYV V Y+E + LF +M
Sbjct: 783 NTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWG---- 838
Query: 110 HMLLVFP-AWIIVCVLKACVCTMNM-ELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
L V P +++ ++ AC + M + G QVHG + K G ++ + +L++FYG
Sbjct: 839 --LGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGL 896
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
+ +A +F ++ HN V WT+ +V G+ +V N ++ M +E + N TF++V +
Sbjct: 897 VYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSS 956
Query: 228 CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
CG ++D G Q+ +I++ G E V L+ M+ + +A VF+ + ++ +I
Sbjct: 957 CGLLEDQ-VLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHM-NECDII 1014
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMK 313
SWNAM+ Y +GL E+ + + M+
Sbjct: 1015 SWNAMISAYAHHGLCRESLRCFHWMR 1040
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 76/272 (27%), Positives = 125/272 (45%), Gaps = 6/272 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N LL ++ G+ + A +F M RD SW M+ YV + + + AE+++ K
Sbjct: 1087 NTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKV 1146
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ F + + C C+ K VH L+ G + + +L+ YGK +
Sbjct: 1147 MNHVTFASALAACSNPECLIE-----SKIVHALIIVAGFHDFLIVGNALVTMYGKLGMMM 1201
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
+A V + + + V W A I + ++ +K + + I N T SVL AC
Sbjct: 1202 EAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSVLGACS 1261
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
DD G +HA+IV G ESD+YV+ L+ MY KC L + +F+ + +K I +W
Sbjct: 1262 APDDLLKHGMPIHAHIVLTGFESDDYVKNSLITMYAKCGDLNSSNYIFDGLGNKSPI-TW 1320
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQE 321
NAM+ +G EA K M+ G+ + +
Sbjct: 1321 NAMVAANAHHGCGEEALKIFGEMRNVGVNLDQ 1352
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 80/295 (27%), Positives = 143/295 (48%), Gaps = 15/295 (5%)
Query: 47 LFLN-RLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L LN +L++ +V G + AR +FD MP R SW M+ GY +++ LF++M
Sbjct: 65 LHLNTKLIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMR- 123
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
H + + L+AC +++G QV G + K N+ + +L++F+ K
Sbjct: 124 ----HCGVKANQFTYGSALRACTSLRCLDMGIQVQGCIQKGRFVENLFVKSALVDFHSKC 179
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
+EDA ++F + + V W A I +G F F+ M R + + YT SVL
Sbjct: 180 GKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPDCYTLGSVL 239
Query: 226 KAC---GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282
+A GG+ Q+H I ++G S + V L++ Y K LR A+ + + ++
Sbjct: 240 RASAEGGGLI----IANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKDLRKGML- 294
Query: 283 KKNIASWNAMLVGYIRNGLY-VEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
KK++ S A++ GY G+Y V+A M I + + ++ + C+++++
Sbjct: 295 KKDLFSSTALITGYAHEGIYSVDALDLFKEMNQMNIGMDDVILCSMLNICANLAS 349
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 81/288 (28%), Positives = 130/288 (45%), Gaps = 9/288 (3%)
Query: 47 LFLNRLLL-MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
LF+ L+ H CG+++ A LF M RD SW MI GY + +F M++
Sbjct: 166 LFVKSALVDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLR 225
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
LV + + VL+A + + Q+HG++ +LG +TG LIN Y K
Sbjct: 226 GG-----LVPDCYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKN 280
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFH-QVFNDFKEMGRERIKKNSYTFSSV 224
L A + + + + TA I EG + + FKEM + I + S+
Sbjct: 281 GSLRSAKDLRKGMLKKDLFSSTALITGYAHEGIYSVDALDLFKEMNQMNIGMDDVILCSM 340
Query: 225 LKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
L C + G Q+HA +K D + L+DMY K + DA+R F+ + ++K
Sbjct: 341 LNICANLASFA-LGTQIHAFALKYQPSYDVAMGNALIDMYAKSGEIEDAKRAFDEM-EEK 398
Query: 285 NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
N+ SW +++ GY ++G A M++ G + + L ACS
Sbjct: 399 NVISWTSLISGYAKHGYGHMAVSLYKKMESKGFKPNDVTFLSLLFACS 446
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/292 (25%), Positives = 135/292 (46%), Gaps = 16/292 (5%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L+ N L+ M+ G + A+++ MP D +W +I G+ + + E + + +
Sbjct: 1184 LIVGNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAYK--LI 1241
Query: 106 RKKGHMLLVFPAWII--VCVLKACVCTMNM-ELGKQVHGLLFKLGSSRNISLTGSLINFY 162
R+KG PA I V VL AC ++ + G +H + G + + SLI Y
Sbjct: 1242 REKG-----IPANYITMVSVLGACSAPDDLLKHGMPIHAHIVLTGFESDDYVKNSLITMY 1296
Query: 163 GKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFS 222
K L ++++F L + + W A + N G + F EM + + ++FS
Sbjct: 1297 AKCGDLNSSNYIFDGLGNKSPITWNAMVAANAHHGCGEEALKIFGEMRNVGVNLDQFSFS 1356
Query: 223 SVLKACG--GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELI 280
L A V ++ G+Q+H ++K+G ESD +V +DMYGKC + D ++
Sbjct: 1357 GGLAATANLAVLEE---GQQLHGLVIKLGFESDLHVTNAAMDMYGKCGEMHDVLKMLPQP 1413
Query: 281 VDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+++ + SWN ++ + R+G + +A + + M G + L AC+
Sbjct: 1414 INRSRL-SWNILISAFARHGCFQKARETFHEMLKLGPKPDHVTFVSLLSACN 1464
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 94/196 (47%), Gaps = 1/196 (0%)
Query: 136 GKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCR 195
GK +H + I T +LIN Y KF +E A +VF +++ N W+ + R
Sbjct: 763 GKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGYVR 822
Query: 196 EGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEY 255
G + + F +M ++ N + +S++ AC + G Q+H +VK G+ D Y
Sbjct: 823 VGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVY 882
Query: 256 VQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKAS 315
V LV YG L+ +A+++FE + D N+ SW +++VGY +G E M+
Sbjct: 883 VGTALVHFYGSIGLVYNAQKLFEEMPD-HNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQE 941
Query: 316 GIQIQESLINDLRIAC 331
G+ ++ + +C
Sbjct: 942 GVSGNQNTFATVTSSC 957
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 81/331 (24%), Positives = 146/331 (44%), Gaps = 24/331 (7%)
Query: 11 DMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFD 70
+ + + C +D +++L HI + + ++ N L+ M S ++ A +FD
Sbjct: 948 NTFATVTSSCGLLEDQVLGYQVLGHI-IQYGFEDSVSVANSLISMFSSFSSVEEACYVFD 1006
Query: 71 EMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCT 130
M D SW MI Y +E + F M H+ + + +L C
Sbjct: 1007 HMNECDIISWNAMISAYAHHGLCRESLRCFHWMR-----HLHNETNSTTLSSLLSVCSSV 1061
Query: 131 MNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKI 190
N++ G+ +HGL+ KLG N+ + +L+ Y + EDA+ VF + + + W + +
Sbjct: 1062 DNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMM 1121
Query: 191 V-----NNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC---GRQMH 242
C +G ++ + +MG+ N TF+S L AC + C + +H
Sbjct: 1122 ACYVQDGKCLDG--LKILAELLQMGK---VMNHVTFASALAAC----SNPECLIESKIVH 1172
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
A I+ G V LV MYGK ++ +A++V + + + +WNA++ G+ N
Sbjct: 1173 ALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTMPQPDRV-TWNALIGGHAENEEP 1231
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIACSS 333
EA K L++ GI + + ACS+
Sbjct: 1232 NEAVKAYKLIREKGIPANYITMVSVLGACSA 1262
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 75/264 (28%), Positives = 120/264 (45%), Gaps = 19/264 (7%)
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQ-ECITLFAEMMKRKKGHMLLVFPAW 118
G L +A+ L M +D S +I GY Y + + LF EM + G
Sbjct: 281 GSLRSAKDLRKGMLKKDLFSSTALITGYAHEGIYSVDALDLFKEMNQMNIG-----MDDV 335
Query: 119 IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL 178
I+ +L C + LG Q+H K S ++++ +LI+ Y K +EDA F ++
Sbjct: 336 ILCSMLNICANLASFALGTQIHAFALKYQPSYDVAMGNALIDMYAKSGEIEDAKRAFDEM 395
Query: 179 KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG--GVDDDG- 235
+ N + WT+ I + G+ H + +K+M + K N TF S+L AC G+ +G
Sbjct: 396 EEKNVISWTSLISGYAKHGYGHMAVSLYKKMESKGFKPNDVTFLSLLFACSHTGLTAEGC 455
Query: 236 NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML-- 293
C M N I ++ Y C +VD++ + LL +A + I K N + W A+L
Sbjct: 456 ECFNNM-VNKYNIKPRAEHY-SC-MVDLFARQGLLEEAYNLLCKIDIKHNASLWGAILGA 512
Query: 294 ---VGYIRNGLYVEATKFLYLMKA 314
GY+ G EA L+ M+
Sbjct: 513 SSIYGYMSLG--KEAASNLFNMQP 534
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 86/182 (47%), Gaps = 8/182 (4%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
+L+ C+ + G +H L G ++ L LI FY K + A VF + +
Sbjct: 36 ILQLCIDKKAKKQGHLIHTHLITNGFGSDLHLNTKLIIFYVKVGDVIAARNVFDGMPERS 95
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC---GR 239
V WTA + + G F + F F +M +K N +T+ S L+AC + C G
Sbjct: 96 VVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGVKANQFTYGSALRACTSL----RCLDMGI 151
Query: 240 QMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRN 299
Q+ I K + +V+ LVD + KC + DA +F +++ +++ SWNAM+ GY
Sbjct: 152 QVQGCIQKGRFVENLFVKSALVDFHSKCGKMEDASYLFGTMME-RDVVSWNAMIGGYAVQ 210
Query: 300 GL 301
G
Sbjct: 211 GF 212
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 108/247 (43%), Gaps = 9/247 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ CG L+++ +FD + + +W M+ +E + +F EM R G
Sbjct: 1290 NSLITMYAKCGDLNSSNYIFDGLGNKSPITWNAMVAANAHHGCGEEALKIFGEM--RNVG 1347
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
L F L A +E G+Q+HGL+ KLG ++ +T + ++ YGK +
Sbjct: 1348 VNLDQFS---FSGGLAATANLAVLEEGQQLHGLVIKLGFESDLHVTNAAMDMYGKCGEMH 1404
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC- 228
D + Q + + W I R G F + F EM + K + TF S+L AC
Sbjct: 1405 DVLKMLPQPINRSRLSWNILISAFARHGCFQKARETFHEMLKLGPKPDHVTFVSLLSACN 1464
Query: 229 -GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
GG+ D+G + E+ C ++D+ G+ L AE + + N
Sbjct: 1465 HGGLVDEGLAYYDSMTREFGV-FPGIEHCVC-IIDLLGRSGRLSHAEGFIKEMPVPPNDL 1522
Query: 288 SWNAMLV 294
+W ++L
Sbjct: 1523 AWRSLLA 1529
>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950 [Vitis vinifera]
Length = 1291
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 86/298 (28%), Positives = 145/298 (48%), Gaps = 6/298 (2%)
Query: 37 RKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQEC 96
+K I + + L+ ++ CGQ+ A ++F+E D W M+ GY D +E
Sbjct: 130 KKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEA 189
Query: 97 ITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTG 156
+ LF++M+ +V +V V+ AC +N++ G VHGL+ + ++ L
Sbjct: 190 LALFSQMVMMD----CVVLDPVTLVSVVSACAQLLNVKAGSCVHGLVIRREFDGDLPLVN 245
Query: 157 SLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKK 216
SL+N Y K C + A +FS++ + + W+ I ++ N F EM +R +
Sbjct: 246 SLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEP 305
Query: 217 NSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERV 276
NS T S L+AC V + G+++H V G E D V L+DMY KC +A +
Sbjct: 306 NSVTVVSALQAC-AVSRNLEEGKKIHKIAVWKGFELDFSVSTALIDMYMKCSCPDEAVDL 364
Query: 277 FELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
F+ + KK++ SW A+L GY +NG+ ++ M + GIQ + + A S +
Sbjct: 365 FQRL-PKKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSEL 421
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/290 (26%), Positives = 144/290 (49%), Gaps = 12/290 (4%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L +N LL ++ G A LF +MP +D SW+ MI Y + E + LF EM++
Sbjct: 241 LPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIE 300
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
++ + +V L+AC + N+E GK++H + G + S++ +LI+ Y K
Sbjct: 301 KR-----FEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKGFELDFSVSTALIDMYMKC 355
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
C ++A +F +L + + V W A + + G ++ F+ M + I+ ++ +L
Sbjct: 356 SCPDEAVDLFQRLPKKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKIL 415
Query: 226 KACG--GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
A G+ C +H +V+ G S+ +V L+++Y KC L DA ++F+ ++
Sbjct: 416 AASSELGIFQQALC---LHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMI-V 471
Query: 284 KNIASWNAMLVGYIRNGLYVEATK-FLYLMKASGIQIQESLINDLRIACS 332
+++ W++M+ Y +G EA + F ++K S ++ + ACS
Sbjct: 472 RDVVIWSSMIAAYGIHGRGGEALEIFDQMVKNSTVRPNNVTFLSILSACS 521
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/284 (26%), Positives = 130/284 (45%), Gaps = 7/284 (2%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
L + +M+VS ++D A +F+++P W VMI G+ + + L+++MM++
Sbjct: 755 LTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKGL 814
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
FP LK+C +++ GK +H L G S ++ + +L++ Y K +
Sbjct: 815 KPDKFAFP-----FALKSCAGLSDLQRGKVIHQHLVCCGCSNDLFVDAALVDMYAKCGDI 869
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
E A VF ++ + V WT+ I G+ + F M + N + SVL AC
Sbjct: 870 EAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSGVIPNRVSILSVLLAC 929
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
G + G H+ +++ G E D V ++DMY KC L A +F+ K++
Sbjct: 930 GNLGALRK-GEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETAG-KDLVC 987
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
W+AM+ Y +G +A M +G++ + ACS
Sbjct: 988 WSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACS 1031
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 93/200 (46%), Gaps = 2/200 (1%)
Query: 137 KQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCRE 196
K+ H +F G + + Y F ++ A VF + + +W I +
Sbjct: 737 KKTHAKIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATD 796
Query: 197 GHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYV 256
G F + +M + +K + + F LK+C G+ D G+ +H ++V G +D +V
Sbjct: 797 GRFLSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQR-GKVIHQHLVCCGCSNDLFV 855
Query: 257 QCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASG 316
LVDMY KC + A VF+ + +++ SW +M+ GY NG E F LM++SG
Sbjct: 856 DAALVDMYAKCGDIEAARLVFDKMA-VRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSG 914
Query: 317 IQIQESLINDLRIACSSISA 336
+ I + +AC ++ A
Sbjct: 915 VIPNRVSILSVLLACGNLGA 934
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/272 (25%), Positives = 124/272 (45%), Gaps = 16/272 (5%)
Query: 47 LFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR 106
F +L ++ C L AR++FDE P + + W + Y ++E + LF +M
Sbjct: 37 FFATKLNSLYAKCASLQAARKVFDETPHPNVHLWNSTLRSYCREKQWEETLRLF-HLMIC 95
Query: 107 KKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFK---LGSSRNISLTGSLINFYG 163
G F I LKAC +ELGK +HG K +GS ++ + +L+ Y
Sbjct: 96 TAGEAPDNF---TIPIALKACAGLRMLELGKVIHGFAKKNDEIGS--DMFVGSALVELYS 150
Query: 164 KFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEM-GRERIKKNSYTFS 222
K + +A VF + +R +TV+WT+ + + + F +M + + + T
Sbjct: 151 KCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCVVLDPVTLV 210
Query: 223 SVLKACGGVDD--DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELI 280
SV+ AC + + G+C +H +++ + D + L+++Y K + A +F +
Sbjct: 211 SVVSACAQLLNVKAGSC---VHGLVIRREFDGDLPLVNSLLNLYAKTGCEKIAANLFSKM 267
Query: 281 VDKKNIASWNAMLVGYIRNGLYVEATKFLYLM 312
+K++ SW+ M+ Y N EA + M
Sbjct: 268 -PEKDVISWSTMIACYANNEAANEALNLFHEM 298
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 87/198 (43%), Gaps = 11/198 (5%)
Query: 119 IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL 178
++V + +AC N Q+H +FK G + L + Y K L+ A VF +
Sbjct: 6 VLVDLFQAC---NNGRSVSQLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDET 62
Query: 179 KRHNTVVWTAKIVNNCREGHFHQVFNDFKEM-GRERIKKNSYTFSSVLKACGGVDDDGNC 237
N +W + + + CRE + + F M +++T LKAC G+
Sbjct: 63 PHPNVHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRML-EL 121
Query: 238 GRQMHANIVK---IGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLV 294
G+ +H K IG SD +V LV++Y KC + +A +VFE + + W +M+
Sbjct: 122 GKVIHGFAKKNDEIG--SDMFVGSALVELYSKCGQMGEALKVFEEF-QRPDTVLWTSMVT 178
Query: 295 GYIRNGLYVEATKFLYLM 312
GY +N EA M
Sbjct: 179 GYQQNNDPEEALALFSQM 196
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 71/153 (46%), Gaps = 10/153 (6%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
+L ++ M+ CG LD AR LFDE +D W+ MI Y ++ I LF +M+K
Sbjct: 954 ILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVK 1013
Query: 106 RKKGHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLF-KLGSSRNISLTGSLINFYG 163
V P+ + CVL AC + +E GK L+ + +R +S +++ G
Sbjct: 1014 AG------VRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEEFVIARKLSNYACMVDLLG 1067
Query: 164 KFRCLEDA-DFVFSQLKRHNTVVWTAKIVNNCR 195
+ L +A D + + + +W ++ CR
Sbjct: 1068 RAGQLSEAVDLIENMPVEPDASIW-GSLLGACR 1099
>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Glycine max]
Length = 1047
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 81/281 (28%), Positives = 134/281 (47%), Gaps = 7/281 (2%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
+ + ++ LL ++V C + TA + F + W VM+V Y + + E
Sbjct: 400 KAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDNLNESFK 459
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
+F +M +P+ +L+ C ++LG+Q+H + K G N+ ++ L
Sbjct: 460 IFTQMQMEGIEPNQFTYPS-----ILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVSSVL 514
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
I+ Y K L+ A +F +LK + V WTA I + F + N FKEM + I ++
Sbjct: 515 IDMYAKLGKLDHALKIFRRLKEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQGIHSDN 574
Query: 219 YTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE 278
F+S + AC G+ N G+Q+HA G D V LV +Y +C +RDA F+
Sbjct: 575 IGFASAISACAGIQAL-NQGQQIHAQACVSGYSDDLSVGNALVSLYARCGKVRDAYFAFD 633
Query: 279 LIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQI 319
I K NI SWN+++ G+ ++G EA M +G +I
Sbjct: 634 KIFSKDNI-SWNSLISGFAQSGHCEEALSLFSQMSKAGQEI 673
Score = 123 bits (309), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 83/283 (29%), Positives = 136/283 (48%), Gaps = 7/283 (2%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ G+LD A ++F + +D SW MI GY + E + LF EM +
Sbjct: 514 LIDMYAKLGKLDHALKIFRRLKEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQGIHSD 573
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+ F + I AC + G+Q+H G S ++S+ +L++ Y + + DA
Sbjct: 574 NIGFASAI-----SACAGIQALNQGQQIHAQACVSGYSDDLSVGNALVSLYARCGKVRDA 628
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
F F ++ + + W + I + GH + + F +M + + NS+TF + A V
Sbjct: 629 YFAFDKIFSKDNISWNSLISGFAQSGHCEEALSLFSQMSKAGQEINSFTFGPAVSAAANV 688
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
+ G+Q+HA I+K G +S+ V L+ +Y KC + DAER F + +KN SWNA
Sbjct: 689 ANV-KLGKQIHAMIIKTGHDSETEVSNVLITLYAKCGNIDDAERQF-FEMPEKNEISWNA 746
Query: 292 MLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
ML GY ++G +A MK G+ + ACS +
Sbjct: 747 MLTGYSQHGHGFKALSLFEDMKQLGVLPNHVTFVGVLSACSHV 789
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 83/293 (28%), Positives = 144/293 (49%), Gaps = 9/293 (3%)
Query: 45 TLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMM 104
+L N L+ ++ G L++A+++FD + RD SW M+ G +E + LF +M
Sbjct: 204 SLFVCNPLIDLYFKNGFLNSAKKVFDGLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQM- 262
Query: 105 KRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYG 163
H V+P +I VL AC ++G+Q+HGL+ K G S + +L+ Y
Sbjct: 263 -----HTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYS 317
Query: 164 KFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSS 223
+ A+ VF+ + + + V + + I ++G+ + FK+M + +K + T +S
Sbjct: 318 RLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVAS 377
Query: 224 VLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
+L AC V G+Q H+ +K G+ SD ++ L+D+Y KC ++ A F L +
Sbjct: 378 LLSACSSVGAL-LVGKQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFF-LSTET 435
Query: 284 KNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+N+ WN MLV Y E+ K M+ GI+ + + CSS+ A
Sbjct: 436 ENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRA 488
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 80/288 (27%), Positives = 134/288 (46%), Gaps = 9/288 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ ++ G A Q+F+ M RD S+ +I G + + LF +M
Sbjct: 310 NALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKMC----- 364
Query: 110 HMLLVFPAWIIVC-VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+ + P + V +L AC + +GKQ H K G S +I L G+L++ Y K +
Sbjct: 365 -LDCLKPDCVTVASLLSACSSVGALLVGKQFHSYAIKAGMSSDIILEGALLDLYVKCSDI 423
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+ A F + N V+W +V + ++ F F +M E I+ N +T+ S+L+ C
Sbjct: 424 KTAHEFFLSTETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRTC 483
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
+ + G Q+H ++K G + + YV L+DMY K L A ++F + +K++ S
Sbjct: 484 SSLRAV-DLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRL-KEKDVVS 541
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
W AM+ GY ++ + EA M+ GI AC+ I A
Sbjct: 542 WTAMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGFASAISACAGIQA 589
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 108/218 (49%), Gaps = 3/218 (1%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
+L C+ + G ++HG + K+G + L L++ Y F L+ A VF ++
Sbjct: 74 LLDGCLSSGWFSDGWKLHGKILKMGFCAEVVLCERLMDLYIAFGDLDGAVTVFDEMPVRP 133
Query: 183 TVVWTAKIVNNCREGHFH-QVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQM 241
W K+++ G +V F+ M +E++K + T++ VL+ CGG D +C ++
Sbjct: 134 LSCWN-KVLHRFVAGKMAGRVLGLFRRMLQEKVKPDERTYAGVLRGCGGGDVPFHCVEKI 192
Query: 242 HANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGL 301
HA + G E+ +V L+D+Y K L A++VF+ + K++ SW AML G ++G
Sbjct: 193 HARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGL-QKRDSVSWVAMLSGLSQSGC 251
Query: 302 YVEATKFLYLMKASGIQIQESLINDLRIACSSISASKI 339
EA M SG+ + + + AC+ + K+
Sbjct: 252 EEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKV 289
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/288 (26%), Positives = 130/288 (45%), Gaps = 10/288 (3%)
Query: 51 RLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGH 110
RL+ ++++ G LD A +FDEMP+R + W ++ +V + LF M++ K
Sbjct: 108 RLMDLYIAFGDLDGAVTVFDEMPVRPLSCWNKVLHRFVAGKMAGRVLGLFRRMLQEK--- 164
Query: 111 MLLVFP-AWIIVCVLKAC-VCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
V P VL+ C + +++H G ++ + LI+ Y K L
Sbjct: 165 ---VKPDERTYAGVLRGCGGGDVPFHCVEKIHARTITHGYENSLFVCNPLIDLYFKNGFL 221
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
A VF L++ ++V W A + + G + F +M + Y FSSVL AC
Sbjct: 222 NSAKKVFDGLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSAC 281
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
V+ G Q+H ++K G + YV LV +Y + AE+VF ++ + + S
Sbjct: 282 TKVEFY-KVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEV-S 339
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+N+++ G + G +A + M ++ + L ACSS+ A
Sbjct: 340 YNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGA 387
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 111/235 (47%), Gaps = 17/235 (7%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ ++ CG++ A FD++ +D SW +I G+ +E ++LF++M K +
Sbjct: 613 NALVSLYARCGKVRDAYFAFDKIFSKDNISWNSLISGFAQSGHCEEALSLFSQMSKAGQE 672
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
F + A N++LGKQ+H ++ K G ++ LI Y K ++
Sbjct: 673 INSFTFGP-----AVSAAANVANVKLGKQIHAMIIKTGHDSETEVSNVLITLYAKCGNID 727
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
DA+ F ++ N + W A + + GH + + F++M + + N TF VL AC
Sbjct: 728 DAERQFFEMPEKNEISWNAMLTGYSQHGHGFKALSLFEDMKQLGVLPNHVTFVGVLSACS 787
Query: 230 --GVDDDG----NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE 278
G+ D+G R++H + K E+ C +VD+ G+ LL A R E
Sbjct: 788 HVGLVDEGIKYFQSMREVHGLVPK-----PEHYAC-VVDLLGRSGLLSRARRFVE 836
>gi|356553444|ref|XP_003545066.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Glycine max]
Length = 1033
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 84/291 (28%), Positives = 147/291 (50%), Gaps = 7/291 (2%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
+L N L+ ++ C +D AR +F MP +D SW +I G ++E + F M
Sbjct: 390 ILIGNALVNLYAKCNAIDNARSIFQLMPSKDTVSWNSIISGLDHNERFEEAVACFHTM-- 447
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
R+ G +V + ++ L +C + LG+Q+HG K G ++S++ +L+ Y +
Sbjct: 448 RRNG---MVPSKFSVISTLSSCASLGWIMLGQQIHGEGIKCGLDLDVSVSNALLTLYAET 504
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKI-VNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
C+E+ VF + ++ V W + I E Q F EM + K N TF ++
Sbjct: 505 DCMEEYQKVFFLMPEYDQVSWNSFIGALATSEASVLQAIKYFLEMMQAGWKPNRVTFINI 564
Query: 225 LKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
L A + GRQ+HA I+K + D ++ L+ YGKC + D E +F + +++
Sbjct: 565 LSAVSSLSLLEL-GRQIHALILKHSVADDNAIENTLLAFYGKCEQMEDCEIIFSRMSERR 623
Query: 285 NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
+ SWNAM+ GYI NG+ +A ++LM G ++ + + + AC+S++
Sbjct: 624 DEVSWNAMISGYIHNGILHKAMGLVWLMMQKGQRLDDFTLATVLSACASVA 674
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 82/269 (30%), Positives = 132/269 (49%), Gaps = 9/269 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGY-VDVADYQECITLFAEMMKRKK 108
N LL ++ ++ +++F MP D SW I A + I F EMM+
Sbjct: 495 NALLTLYAETDCMEEYQKVFFLMPEYDQVSWNSFIGALATSEASVLQAIKYFLEMMQAGW 554
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+ F + +L A +ELG+Q+H L+ K + + ++ +L+ FYGK +
Sbjct: 555 KPNRVTF-----INILSAVSSLSLLELGRQIHALILKHSVADDNAIENTLLAFYGKCEQM 609
Query: 169 EDADFVFSQL-KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
ED + +FS++ +R + V W A I G H+ M ++ + + +T ++VL A
Sbjct: 610 EDCEIIFSRMSERRDEVSWNAMISGYIHNGILHKAMGLVWLMMQKGQRLDDFTLATVLSA 669
Query: 228 CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
C V G ++HA ++ LE++ V LVDMY KC + A R FEL+ +NI
Sbjct: 670 CASVATLER-GMEVHACAIRACLEAEVVVGSALVDMYAKCGKIDYASRFFELM-PVRNIY 727
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASG 316
SWN+M+ GY R+G +A K MK G
Sbjct: 728 SWNSMISGYARHGHGGKALKLFTQMKQHG 756
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 82/283 (28%), Positives = 132/283 (46%), Gaps = 14/283 (4%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
+ + + + N L+ + V G L +A++LFDEMP ++ SW+ ++ GY E
Sbjct: 67 KTGLTSDVFWCNTLVNIFVRAGNLVSAQKLFDEMPQKNLVSWSCLVSGYAQNGMPDEACM 126
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKAC--VCTMNMELGKQVHGLLFKLGSSRNISLTG 156
LF ++ L+ + I L+AC + ++LG ++HGL+ K + ++ L+
Sbjct: 127 LFRGIISAG-----LLPNHYAIGSALRACQELGPNMLKLGMEIHGLISKSPYASDMVLSN 181
Query: 157 SLINFYGKFRC-LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERI- 214
L++ Y ++DA VF ++K + W + I CR G F F M RE
Sbjct: 182 VLMSMYSHCSASIDDARRVFEEIKMKTSASWNSIISVYCRRGDAISAFKLFSSMQREATE 241
Query: 215 ---KKNSYTFSSVLK-ACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLL 270
+ N YTF S++ AC VD QM A I K D YV LV + + L+
Sbjct: 242 LNCRPNEYTFCSLVTVACSLVDCGLTLLEQMLARIEKSSFVKDLYVGSALVSGFARYGLI 301
Query: 271 RDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMK 313
A+ +FE + D +N + N ++VG R EA K MK
Sbjct: 302 DSAKMIFEQM-DDRNAVTMNGLMVGLARQHQGEEAAKIFKEMK 343
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/247 (24%), Positives = 101/247 (40%), Gaps = 10/247 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMP-LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
N LL + C Q++ +F M RD SW MI GY+ + + L MM+ K
Sbjct: 597 NTLLAFYGKCEQMEDCEIIFSRMSERRDEVSWNAMISGYIHNGILHKAMGLVWLMMQ--K 654
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
G L F + VL AC +E G +VH + + + +L++ Y K +
Sbjct: 655 GQRLDDF---TLATVLSACASVATLERGMEVHACAIRACLEAEVVVGSALVDMYAKCGKI 711
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+ A F + N W + I R GH + F +M + + TF VL AC
Sbjct: 712 DYASRFFELMPVRNIYSWNSMISGYARHGHGGKALKLFTQMKQHGQLPDHVTFVGVLSAC 771
Query: 229 G--GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
G+ D+G + + ++ E+ C +VD+ G+ ++ E + + N
Sbjct: 772 SHVGLVDEGFEHFKSMGEVYELA-PRIEHFSC-MVDLLGRAGDVKKLEEFIKTMPMNPNA 829
Query: 287 ASWNAML 293
W +L
Sbjct: 830 LIWRTIL 836
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 88/193 (45%), Gaps = 5/193 (2%)
Query: 129 CTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTA 188
CT+ E Q+H ++K G + ++ +L+N + + L A +F ++ + N V W+
Sbjct: 53 CTV--EDAHQLHLQIYKTGLTSDVFWCNTLVNIFVRAGNLVSAQKLFDEMPQKNLVSWSC 110
Query: 189 KIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDG-NCGRQMHANIVK 247
+ + G + F+ + + N Y S L+AC + + G ++H I K
Sbjct: 111 LVSGYAQNGMPDEACMLFRGIISAGLLPNHYAIGSALRACQELGPNMLKLGMEIHGLISK 170
Query: 248 IGLESDEYVQCGLVDMYGKCRL-LRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEAT 306
SD + L+ MY C + DA RVFE I K ASWN+++ Y R G + A
Sbjct: 171 SPYASDMVLSNVLMSMYSHCSASIDDARRVFEEI-KMKTSASWNSIISVYCRRGDAISAF 229
Query: 307 KFLYLMKASGIQI 319
K M+ ++
Sbjct: 230 KLFSSMQREATEL 242
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 70/158 (44%), Gaps = 17/158 (10%)
Query: 180 RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGR 239
R + + +++++C H H F + N Y S V+D
Sbjct: 16 RSTQLALSEQLLHHCNSSHHHLHFPPLN------LDYNRYRDSCT------VED----AH 59
Query: 240 QMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRN 299
Q+H I K GL SD + LV+++ + L A+++F+ + +KN+ SW+ ++ GY +N
Sbjct: 60 QLHLQIYKTGLTSDVFWCNTLVNIFVRAGNLVSAQKLFDEM-PQKNLVSWSCLVSGYAQN 118
Query: 300 GLYVEATKFLYLMKASGIQIQESLINDLRIACSSISAS 337
G+ EA + ++G+ I AC + +
Sbjct: 119 GMPDEACMLFRGIISAGLLPNHYAIGSALRACQELGPN 156
>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
Length = 671
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 91/286 (31%), Positives = 141/286 (49%), Gaps = 15/286 (5%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ + S G + +A++LFDE+P++D SW MI GY + Y+E + LF EMMK M
Sbjct: 136 LITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMK-----M 190
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+ V VL AC + ++ELG+QVH + G N+ + +LI+ Y K +E A
Sbjct: 191 NVRPDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETA 250
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--- 228
+F L + + W I + + F+EM R N T SVL AC
Sbjct: 251 CGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHL 310
Query: 229 GGVDDDGNCGRQMHANIVK--IGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
G +D GR +H I K G+ + ++ L+DMY KC + A +VF ++ K++
Sbjct: 311 GAID----IGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSML-HKSL 365
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+SWNAM+ G+ +G + M+ GI+ + L ACS
Sbjct: 366 SSWNAMIFGFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACS 411
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 77/312 (24%), Positives = 136/312 (43%), Gaps = 44/312 (14%)
Query: 62 LDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIV 121
L A +F+ + + W MI G+ +D +TL+ M+ + L+ ++
Sbjct: 14 LPYATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVS-----LGLLPNSYTFP 68
Query: 122 CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA---------- 171
+LK+C + G+Q+HG + KLG ++ + SLI+ Y + LEDA
Sbjct: 69 FLLKSCAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHR 128
Query: 172 DFV---------------------FSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMG 210
D V F ++ + V W A I G + + F+EM
Sbjct: 129 DVVSYTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMM 188
Query: 211 RERIKKNSYTFSSVLKAC---GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKC 267
+ ++ + T+ +VL AC G ++ GRQ+H+ + G +S+ + L+D+Y KC
Sbjct: 189 KMNVRPDESTYVTVLSACAHSGSIE----LGRQVHSWVDDHGFDSNLKIVNALIDLYSKC 244
Query: 268 RLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDL 327
+ A +F+ + K++ SWN ++ GY LY EA M SG + + +
Sbjct: 245 GEVETACGLFQGL-SYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSV 303
Query: 328 RIACSSISASKI 339
AC+ + A I
Sbjct: 304 LPACAHLGAIDI 315
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 71/289 (24%), Positives = 131/289 (45%), Gaps = 20/289 (6%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVN---IKPTLLFLNRLLLMHVSCGQLDTARQLF 69
Y ++ C +G+ EL + V+ L +N L+ ++ CG+++TA LF
Sbjct: 199 YVTVLSACAH----SGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETACGLF 254
Query: 70 DEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVC 129
+ +D SW +I GY + Y+E + LF EM++ + + ++ VL AC
Sbjct: 255 QGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVT-----MLSVLPACAH 309
Query: 130 TMNMELGKQVHGLLFKL--GSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWT 187
+++G+ +H + K G + SL SLI+ Y K +E A VF+ + + W
Sbjct: 310 LGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWN 369
Query: 188 AKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--GGVDDDGNCGRQMHANI 245
A I G F+ F M + I+ + TF +L AC G+ D GR + ++
Sbjct: 370 AMIFGFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHSGMLD---LGRHIFRSM 426
Query: 246 VKIGLESDEYVQCG-LVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
+ + + G ++D+ G L ++AE + + + + W ++L
Sbjct: 427 TQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLL 475
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 80/198 (40%), Gaps = 31/198 (15%)
Query: 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
F L A VF ++ N ++W I + + M + NSYTF +
Sbjct: 11 FDGLPYATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFL 70
Query: 225 LKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE------ 278
LK+C G+Q+H ++K+G + D YV L+ MY + L DA +VF+
Sbjct: 71 LKSCAK-SKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRD 129
Query: 279 ------LI------------------VDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKA 314
LI + K++ SWNAM+ GY G Y EA + M
Sbjct: 130 VVSYTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMK 189
Query: 315 SGIQIQESLINDLRIACS 332
++ ES + AC+
Sbjct: 190 MNVRPDESTYVTVLSACA 207
>gi|359475985|ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
[Vitis vinifera]
Length = 1580
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 88/298 (29%), Positives = 147/298 (49%), Gaps = 8/298 (2%)
Query: 35 HIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQ 94
H K NI + + L+ ++ G+++ A LF D W M+ GY+ D +
Sbjct: 1031 HALKTGNIADSFV-ATTLIDVYSKSGKMEEAEFLFQNKDDLDLACWNAMMFGYIIGNDGK 1089
Query: 95 ECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISL 154
+ + LF+ + K + + + KAC C + ++ GKQ+H K G ++ +
Sbjct: 1090 KALELFSLIHKSGEKSDQIT-----LATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHV 1144
Query: 155 TGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERI 214
+++ Y K + +A VF+ + + V WT+ I G+ Q + M + R+
Sbjct: 1145 NSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRV 1204
Query: 215 KKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAE 274
+ YTF++++KA V GRQ+HAN++K+ SD +V LVDMY KC + DA
Sbjct: 1205 MPDEYTFATLIKASSCV-TALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAY 1263
Query: 275 RVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
R+F+ + + +NIA WNAMLVG ++G EA MK+ GI+ + ACS
Sbjct: 1264 RLFKKM-NVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACS 1320
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 115/217 (52%), Gaps = 1/217 (0%)
Query: 115 FPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFV 174
+ A ++ VL A T ++ELGKQVHG+ K G ++S+ SL+N Y K C A V
Sbjct: 902 YDAVTLLVVLAAVAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREV 961
Query: 175 FSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDD 234
F+ +K + + W + I + + + N F ++ E +K + +T +SVL+AC + D
Sbjct: 962 FNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASVLRACSSLIDG 1021
Query: 235 GNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLV 294
N RQ+H + +K G +D +V L+D+Y K + +AE +F+ D ++A WNAM+
Sbjct: 1022 LNISRQIHVHALKTGNIADSFVATTLIDVYSKSGKMEEAEFLFQ-NKDDLDLACWNAMMF 1080
Query: 295 GYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
GYI +A + L+ SG + + + AC
Sbjct: 1081 GYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKAC 1117
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 77/294 (26%), Positives = 137/294 (46%), Gaps = 20/294 (6%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ G AR++F++M D SW MI + +E + LF +++
Sbjct: 943 NSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLL----- 997
Query: 110 HMLLVFPAWIIVCVLKACVCTMN-MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
H L + + VL+AC ++ + + +Q+H K G+ + + +LI+ Y K +
Sbjct: 998 HEGLKPDHFTLASVLRACSSLIDGLNISRQIHVHALKTGNIADSFVATTLIDVYSKSGKM 1057
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
E+A+F+F + W A + + F + + K + T ++ KAC
Sbjct: 1058 EEAEFLFQNKDDLDLACWNAMMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKAC 1117
Query: 229 GGVDDDGNC------GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282
G C G+Q+HA+ +K G +SD +V G++DMY KC + +A VF I
Sbjct: 1118 G-------CLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISA 1170
Query: 283 KKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
++A W +M+ G + NG +A + + M+ S + E L A S ++A
Sbjct: 1171 PDDVA-WTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTA 1223
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 123/258 (47%), Gaps = 10/258 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
+L M++ CG + A +F+ + D +W MI G VD + + + ++ M + +
Sbjct: 1148 ILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSR---- 1203
Query: 112 LLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
V P + ++KA C +E G+Q+H + KL + + SL++ Y K +ED
Sbjct: 1204 --VMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIED 1261
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
A +F ++ N +W A +V + G+ + N FK M I+ + +F +L AC
Sbjct: 1262 AYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSH 1321
Query: 231 VDDDGNCGRQMHANIVKIGLESD-EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+H+ G+E + E+ C LVD G+ L+++A++V E + K + AS
Sbjct: 1322 AGLTSEAYEYLHSMPNDYGIEPEIEHYSC-LVDALGRAGLVQEADKVIETMPFKAS-ASI 1379
Query: 290 NAMLVGYIRNGLYVEATK 307
N L+G R VE K
Sbjct: 1380 NRALLGACRIQGDVETGK 1397
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 98/211 (46%), Gaps = 12/211 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADY-----QECITLFAEMM 104
N LL M+ CG L +ARQ+FD P RD +W ++ Y D QE + LF ++
Sbjct: 660 NNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYAASVDSNDGNAQEGLHLF-RLL 718
Query: 105 KRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
+ G + + VLK C+ + + + VHG K+G ++ ++G+L+N Y K
Sbjct: 719 RASLGSTTRM----TLAPVLKLCLNSGCLWAAEGVHGYAIKIGLEWDVFVSGALVNIYSK 774
Query: 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
+ DA +F ++ + V+W + + G + F F E R ++ + ++ +
Sbjct: 775 CGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLI 834
Query: 225 LKACGGVD-DDGN-CGRQMHANIVKIGLESD 253
L V+ D+G Q+ A K+ L D
Sbjct: 835 LNGVSEVNWDEGKWLADQVQAYAAKLSLSDD 865
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 97/207 (46%), Gaps = 13/207 (6%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
+L+ + T N+ LGK H + GS+ + L+ +L+ Y K L A VF +
Sbjct: 627 LLRTAISTHNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERD 686
Query: 183 TVVWTAKIVN-----NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC 237
V W A + + +G+ + + F+ + T + VLK C + C
Sbjct: 687 LVTWNAILGAYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCL----NSGC 742
Query: 238 ---GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLV 294
+H +KIGLE D +V LV++Y KC +RDA +F+ + + +++ WN ML
Sbjct: 743 LWAAEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRE-RDVVLWNMMLK 801
Query: 295 GYIRNGLYVEATKFLYLMKASGIQIQE 321
GY++ GL EA + SG++ E
Sbjct: 802 GYVQLGLEKEAFQLFSEFHRSGLRPDE 828
>gi|224085073|ref|XP_002307479.1| predicted protein [Populus trichocarpa]
gi|222856928|gb|EEE94475.1| predicted protein [Populus trichocarpa]
Length = 1026
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 92/297 (30%), Positives = 142/297 (47%), Gaps = 7/297 (2%)
Query: 38 KRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECI 97
++V +P + ++ +V G+LD A LF MP R+ +W +MI G+ E I
Sbjct: 253 EKVGQEPDQVAFVTVINAYVDLGRLDNASDLFSRMPNRNVVAWNLMISGHAKGGYGVEAI 312
Query: 98 TLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGS 157
F M RK G + + VL A ++ G VH K G N+ + S
Sbjct: 313 EFFQNM--RKAG---IKSTRSTLGSVLSAIASLAALDFGLLVHAEALKQGLHSNVYVGSS 367
Query: 158 LINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKN 217
L++ Y K +E A VF L N V+W A + + G+ ++V F M +
Sbjct: 368 LVSMYAKCGKMEAAKKVFDTLNEQNVVLWNAMLGGYVQNGYANEVMELFFNMKSCGFYPD 427
Query: 218 SYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVF 277
+T+SS+L AC + + G Q+H+ I+K S+ +V LVDMY K L DA + F
Sbjct: 428 DFTYSSILSACACL-KYLDLGHQLHSVIIKNKFASNLFVGNALVDMYAKSGALEDARQQF 486
Query: 278 ELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
ELI ++ N+ SWN ++VGY++ VEA M GI E + + AC+S+
Sbjct: 487 ELIRNRDNV-SWNVIIVGYVQEEDEVEAFHLFRRMNLLGILPDEVSLASILSACASV 542
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 84/285 (29%), Positives = 138/285 (48%), Gaps = 9/285 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+ L+ M+ CG +D+A ++ MP R S +I GY + + ++ + LF +M+
Sbjct: 568 SSLIDMYAKCGAIDSAHKILACMPERSVVSMNALIAGYAQI-NLEQAVNLFRDMLVEGIN 626
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTG-SLINFYGKFRCL 168
+ F + +L AC + LG+Q+H L+ K+G + G SL+ Y
Sbjct: 627 STEITFAS-----LLDACHEQQKLNLGRQIHSLILKMGLQLDDEFLGVSLLGMYMNSLRT 681
Query: 169 EDADFVFSQLKRHNT-VVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
DA +FS+ + VVWTA I + +KEM + + TF S L+A
Sbjct: 682 TDASVLFSEFSNPKSAVVWTAMISGLSQNDCSVVALQLYKEMRSCNVLPDQATFVSALRA 741
Query: 228 CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
C V + G + H+ I G +SDE LVDMY KC ++ + +VF+ + KK++
Sbjct: 742 CAVVSSIKD-GTETHSLIFHTGFDSDELTSSALVDMYAKCGDVKSSMQVFKEMSRKKDVI 800
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
SWN+M+VG+ +NG +A + MK S + + + ACS
Sbjct: 801 SWNSMIVGFAKNGYAEDALRVFDEMKQSHVTPDDVTFLGVLTACS 845
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 91/292 (31%), Positives = 143/292 (48%), Gaps = 12/292 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ G L+ ARQ F+ + RD SW V+IVGYV D E LF M
Sbjct: 467 NALVDMYAKSGALEDARQQFELIRNRDNVSWNVIIVGYVQEEDEVEAFHLFRRM------ 520
Query: 110 HMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
++L + P + + +L AC +E GKQVH L K G + SLI+ Y K +
Sbjct: 521 NLLGILPDEVSLASILSACASVRGLEQGKQVHCLSVKTGQETKLYSGSSLIDMYAKCGAI 580
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+ A + + + + V A ++ + + Q N F++M E I TF+S+L AC
Sbjct: 581 DSAHKILACMPERSVVSMNA-LIAGYAQINLEQAVNLFRDMLVEGINSTEITFASLLDAC 639
Query: 229 GGVDDDGNCGRQMHANIVKIGLE-SDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
N GRQ+H+ I+K+GL+ DE++ L+ MY DA +F + K+
Sbjct: 640 HE-QQKLNLGRQIHSLILKMGLQLDDEFLGVSLLGMYMNSLRTTDASVLFSEFSNPKSAV 698
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGI-QIQESLINDLRIACSSISASK 338
W AM+ G +N V A + M++ + Q + ++ LR AC+ +S+ K
Sbjct: 699 VWTAMISGLSQNDCSVVALQLYKEMRSCNVLPDQATFVSALR-ACAVVSSIK 749
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/283 (27%), Positives = 135/283 (47%), Gaps = 10/283 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+ L+ M+ CG+++ A+++FD + ++ W M+ GYV E + LF M + G
Sbjct: 366 SSLVSMYAKCGKMEAAKKVFDTLNEQNVVLWNAMLGGYVQNGYANEVMELFFNM--KSCG 423
Query: 110 HMLLVFPA-WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+P + +L AC C ++LG Q+H ++ K + N+ + +L++ Y K L
Sbjct: 424 ----FYPDDFTYSSILSACACLKYLDLGHQLHSVIIKNKFASNLFVGNALVDMYAKSGAL 479
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
EDA F ++ + V W IV +E + F+ F+ M I + + +S+L AC
Sbjct: 480 EDARQQFELIRNRDNVSWNVIIVGYVQEEDEVEAFHLFRRMNLLGILPDEVSLASILSAC 539
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
V G+Q+H VK G E+ Y L+DMY KC + A ++ + ++++ S
Sbjct: 540 ASVRGLEQ-GKQVHCLSVKTGQETKLYSGSSLIDMYAKCGAIDSAHKILACM-PERSVVS 597
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
NA++ GY + L +A M GI E L AC
Sbjct: 598 MNALIAGYAQINLE-QAVNLFRDMLVEGINSTEITFASLLDAC 639
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 93/180 (51%), Gaps = 2/180 (1%)
Query: 137 KQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCRE 196
K +H KLG L +++ Y K ++ A+ F QL+ + + W + + + ++
Sbjct: 79 KIIHAQSLKLGFWSKGVLGNVIVDLYAKCADVDYAERAFKQLEDKDILAWNSILSMHSKQ 138
Query: 197 GHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYV 256
G H V F + + N +TF+ VL +C ++ CGRQ+H N+VK+G ES Y
Sbjct: 139 GFPHLVVKYFGLLWNSGVWPNEFTFAIVLSSCARLEM-VKCGRQVHCNVVKMGFESISYC 197
Query: 257 QCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASG 316
+ L+ MY KC L DA +F+ V+ + SW +M+ GYI+ GL EA K M+ G
Sbjct: 198 EGALIGMYAKCNFLTDARSIFDGAVELDKV-SWTSMIGGYIKVGLPEEAVKVFQEMEKVG 256
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 84/404 (20%), Positives = 156/404 (38%), Gaps = 90/404 (22%)
Query: 12 MYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPT-----------LLFLNRLLL------ 54
+YT +++ C + L + I +R++ T L F ++ +L
Sbjct: 43 IYTHILQNCLQKSKQVKTHSLFDEIPQRLSQFSTTNKIIHAQSLKLGFWSKGVLGNVIVD 102
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
++ C +D A + F ++ +D +W ++ + + F + V
Sbjct: 103 LYAKCADVDYAERAFKQLEDKDILAWNSILSMHSKQGFPHLVVKYFGLLWNSG------V 156
Query: 115 FP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADF 173
+P + VL +C ++ G+QVH + K+G G+LI Y K L DA
Sbjct: 157 WPNEFTFAIVLSSCARLEMVKCGRQVHCNVVKMGFESISYCEGALIGMYAKCNFLTDARS 216
Query: 174 VFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA---CGG 230
+F + V WT+ I + G + F+EM + + + F +V+ A G
Sbjct: 217 IFDGAVELDKVSWTSMIGGYIKVGLPEEAVKVFQEMEKVGQEPDQVAFVTVINAYVDLGR 276
Query: 231 VDDDGNCGRQM--------------HA-------------NIVKIGLESD---------- 253
+D+ + +M HA N+ K G++S
Sbjct: 277 LDNASDLFSRMPNRNVVAWNLMISGHAKGGYGVEAIEFFQNMRKAGIKSTRSTLGSVLSA 336
Query: 254 ---------------EYVQCGL----------VDMYGKCRLLRDAERVFELIVDKKNIAS 288
E ++ GL V MY KC + A++VF+ + +++N+
Sbjct: 337 IASLAALDFGLLVHAEALKQGLHSNVYVGSSLVSMYAKCGKMEAAKKVFDTL-NEQNVVL 395
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
WNAML GY++NG E + + MK+ G + + + AC+
Sbjct: 396 WNAMLGGYVQNGYANEVMELFFNMKSCGFYPDDFTYSSILSACA 439
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 106/246 (43%), Gaps = 11/246 (4%)
Query: 52 LLLMHVSCGQLDTARQLFDEMP-LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGH 110
LL M+++ + A LF E + W MI G +C + ++ K +
Sbjct: 671 LLGMYMNSLRTTDASVLFSEFSNPKSAVVWTAMISGL----SQNDCSVVALQLYKEMRSC 726
Query: 111 MLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
+L A V L+AC +++ G + H L+F G + + +L++ Y K ++
Sbjct: 727 NVLPDQA-TFVSALRACAVVSSIKDGTETHSLIFHTGFDSDELTSSALVDMYAKCGDVKS 785
Query: 171 ADFVFSQLKRHNTVV-WTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
+ VF ++ R V+ W + IV + G+ F EM + + + TF VL AC
Sbjct: 786 SMQVFKEMSRKKDVISWNSMIVGFAKNGYAEDALRVFDEMKQSHVTPDDVTFLGVLTACS 845
Query: 230 --GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
G +G M N+ + +D + C +VD+ G+ L++AE + + +
Sbjct: 846 HSGRVSEGRLIFDMMVNLYGMQPRAD-HCAC-MVDLLGRWGSLKEAEEFINKLNFEPDAK 903
Query: 288 SWNAML 293
W ML
Sbjct: 904 VWATML 909
>gi|356521082|ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g13230, mitochondrial-like [Glycine max]
Length = 780
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 84/282 (29%), Positives = 140/282 (49%), Gaps = 6/282 (2%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL ++ G++ A+Q F+EMP D W++MI Y +E + LF M +
Sbjct: 246 LLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSS---- 301
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
++V + VL+AC + + LG Q+H + K+G N+ ++ +L++ Y K +E++
Sbjct: 302 VVVPNNFTFASVLQACASLVLLNLGNQIHSCVLKVGLDSNVFVSNALMDVYAKCGEIENS 361
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
+F+ N V W IV + G + N F M I+ T+SSVL+A +
Sbjct: 362 VKLFTGSTEKNEVAWNTIIVGYVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVLRASASL 421
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
GRQ+H+ +K D V L+DMY KC + DA F+ + DK++ SWNA
Sbjct: 422 -VALEPGRQIHSLTIKTMYNKDSVVANSLIDMYAKCGRIDDARLTFDKM-DKQDEVSWNA 479
Query: 292 MLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSS 333
++ GY +GL +EA +M+ S + + + ACS+
Sbjct: 480 LICGYSIHGLGMEALNLFDMMQQSNSKPNKLTFVGVLSACSN 521
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/279 (27%), Positives = 142/279 (50%), Gaps = 8/279 (2%)
Query: 59 CGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAW 118
CG +D ARQ+FD + +D SW M+ Y + +++ + LF +M R G+ F
Sbjct: 152 CGNVDAARQVFDGIYFKDMVSWTGMVACYAENYCHEDSLLLFCQM--RIMGYRPNNF--- 206
Query: 119 IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL 178
I LK+C ++GK VHG K+ R++ + +L+ Y K + +A F ++
Sbjct: 207 TISAALKSCNGLEAFKVGKSVHGCALKVCYDRDLYVGIALLELYTKSGEIAEAQQFFEEM 266
Query: 179 KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRER-IKKNSYTFSSVLKACGGVDDDGNC 237
+ + + W+ I + + F M + + N++TF+SVL+AC + N
Sbjct: 267 PKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQACASL-VLLNL 325
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYI 297
G Q+H+ ++K+GL+S+ +V L+D+Y KC + ++ ++F +K +A WN ++VGY+
Sbjct: 326 GNQIHSCVLKVGLDSNVFVSNALMDVYAKCGEIENSVKLFTGSTEKNEVA-WNTIIVGYV 384
Query: 298 RNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+ G +A M IQ E + + A +S+ A
Sbjct: 385 QLGDGEKALNLFSNMLGLDIQPTEVTYSSVLRASASLVA 423
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/258 (24%), Positives = 121/258 (46%), Gaps = 11/258 (4%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
+V + + N L+ ++ CG+++ + +LF ++ +W +IVGYV + D ++ +
Sbjct: 335 KVGLDSNVFVSNALMDVYAKCGEIENSVKLFTGSTEKNEVAWNTIIVGYVQLGDGEKALN 394
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
LF+ M+ + + + VL+A + +E G+Q+H L K +++ + SL
Sbjct: 395 LFSNMLGLDIQPTEVTYSS-----VLRASASLVALEPGRQIHSLTIKTMYNKDSVVANSL 449
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
I+ Y K ++DA F ++ + + V W A I G + N F M + K N
Sbjct: 450 IDMYAKCGRIDDARLTFDKMDKQDEVSWNALICGYSIHGLGMEALNLFDMMQQSNSKPNK 509
Query: 219 YTFSSVLKAC--GGVDDDGNCGRQMHANIVKIGLES-DEYVQCGLVDMYGKCRLLRDAER 275
TF VL AC G+ D G + + G+E E+ C +V + G+ +A +
Sbjct: 510 LTFVGVLSACSNAGLLDKGRA--HFKSMLQDYGIEPCIEHYTC-MVWLLGRSGQFDEAVK 566
Query: 276 VFELIVDKKNIASWNAML 293
+ I + ++ W A+L
Sbjct: 567 LIGEIPFQPSVMVWRALL 584
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 79/327 (24%), Positives = 147/327 (44%), Gaps = 17/327 (5%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
Y ++++ +D L HI K L N LL +V G L+ A +LFDEM
Sbjct: 6 YANMLQQAIRNRDPNAGKSLHCHILKH-GASLDLFAQNILLNTYVHFGFLEDASKLFDEM 64
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN 132
PL + S+ + G+ +Q + ++G+ + F + +LK V
Sbjct: 65 PLTNTVSFVTLAQGFSRSHQFQ--RARRLLLRLFREGYEVNQF---VFTTLLKLLVSMDL 119
Query: 133 MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIV- 191
+ VH ++KLG + + +LI+ Y ++ A VF + + V WT +
Sbjct: 120 ADTCLSVHAYVYKLGHQADAFVGTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVAC 179
Query: 192 ---NNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKI 248
N C E +F + MG + N++T S+ LK+C G+ + G+ +H +K+
Sbjct: 180 YAENYCHEDSL-LLFCQMRIMG---YRPNNFTISAALKSCNGL-EAFKVGKSVHGCALKV 234
Query: 249 GLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKF 308
+ D YV L+++Y K + +A++ FE + K ++ W+ M+ Y ++ EA +
Sbjct: 235 CYDRDLYVGIALLELYTKSGEIAEAQQFFEEM-PKDDLIPWSLMISRYAQSDKSKEALEL 293
Query: 309 LYLMKASGIQIQESL-INDLRIACSSI 334
M+ S + + + + AC+S+
Sbjct: 294 FCRMRQSSVVVPNNFTFASVLQACASL 320
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 95/204 (46%), Gaps = 2/204 (0%)
Query: 136 GKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCR 195
GK +H + K G+S ++ L+N Y F LEDA +F ++ NTV + R
Sbjct: 22 GKSLHCHILKHGASLDLFAQNILLNTYVHFGFLEDASKLFDEMPLTNTVSFVTLAQGFSR 81
Query: 196 EGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEY 255
F + + RE + N + F+++LK +D C +HA + K+G ++D +
Sbjct: 82 SHQFQRARRLLLRLFREGYEVNQFVFTTLLKLLVSMDLADTC-LSVHAYVYKLGHQADAF 140
Query: 256 VQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKAS 315
V L+D Y C + A +VF+ I K++ SW M+ Y N + ++ M+
Sbjct: 141 VGTALIDAYSVCGNVDAARQVFDGIY-FKDMVSWTGMVACYAENYCHEDSLLLFCQMRIM 199
Query: 316 GIQIQESLINDLRIACSSISASKI 339
G + I+ +C+ + A K+
Sbjct: 200 GYRPNNFTISAALKSCNGLEAFKV 223
>gi|297815974|ref|XP_002875870.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297321708|gb|EFH52129.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 700
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 86/291 (29%), Positives = 144/291 (49%), Gaps = 15/291 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L ++ G L ARQ+FD+MP RD SW +I GYV + E + LF+ M
Sbjct: 38 NSHLRSLINAGNLRVARQVFDKMPHRDIVSWTAIIKGYVTANNSDEAMILFSAMR----- 92
Query: 110 HMLLVFPA-----WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
+V PA ++ VLKAC + N+ G+ +H K ++ + SL++ Y +
Sbjct: 93 ---VVDPAVSPDTSVVSVVLKACGQSSNIAYGESLHAYAVKTSLLSSVFVGSSLLDMYKR 149
Query: 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
+E + VFS++ N V WTA I G + + F EM +++TF+
Sbjct: 150 VGKIEKSCRVFSEMPFRNAVTWTAIITGLVHAGRYKEGLTYFSEMSSSEELSDTFTFAIA 209
Query: 225 LKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
LKAC G+ G+Q+H +++ G ++ +V L MY +C +RD +FE + ++
Sbjct: 210 LKACAGLRQV-KYGKQIHTHVIVRGFDATVWVANSLATMYTECGEMRDGLCLFENM-SER 267
Query: 285 NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
++ SW +++V Y R G +A + M+ S + E + AC+S+S
Sbjct: 268 DVVSWTSLIVAYNRIGHEEKAVETFIKMRNSQVPPNEQTFATMFSACASLS 318
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/307 (26%), Positives = 143/307 (46%), Gaps = 8/307 (2%)
Query: 10 TDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLF 69
T + + ++K C Q + E L+ + ++ ++ + LL M+ G+++ + ++F
Sbjct: 102 TSVVSVVLKACG-QSSNIAYGESLHAYAVKTSLLSSVFVGSSLLDMYKRVGKIEKSCRVF 160
Query: 70 DEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVC 129
EMP R+ +W +I G V Y+E +T F+EM ++ F LKAC
Sbjct: 161 SEMPFRNAVTWTAIITGLVHAGRYKEGLTYFSEMSSSEELSDTFTF-----AIALKACAG 215
Query: 130 TMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAK 189
++ GKQ+H + G + + SL Y + + D +F + + V WT+
Sbjct: 216 LRQVKYGKQIHTHVIVRGFDATVWVANSLATMYTECGEMRDGLCLFENMSERDVVSWTSL 275
Query: 190 IVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIG 249
IV R GH + F +M ++ N TF+++ AC + G Q+H N+ +G
Sbjct: 276 IVAYNRIGHEEKAVETFIKMRNSQVPPNEQTFATMFSACASLSRL-VWGEQLHCNVFSLG 334
Query: 250 LESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFL 309
L V ++ MY C L A +F+ + ++I SW+ ++ GY + G EA K+
Sbjct: 335 LNDSLSVSNSMMKMYSTCGKLDSASVLFQGM-RCRDIISWSTIIGGYSQAGFGEEAFKYF 393
Query: 310 YLMKASG 316
M+ SG
Sbjct: 394 SWMRQSG 400
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/297 (25%), Positives = 135/297 (45%), Gaps = 10/297 (3%)
Query: 10 TDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLF 69
T + +K C + ++ H+ R T+ N L M+ CG++ LF
Sbjct: 203 TFTFAIALKACAGLRQVKYGKQIHTHVIVR-GFDATVWVANSLATMYTECGEMRDGLCLF 261
Query: 70 DEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVC 129
+ M RD SW +IV Y + ++ + F +M + F + AC
Sbjct: 262 ENMSERDVVSWTSLIVAYNRIGHEEKAVETFIKMRNSQVPPNEQTF-----ATMFSACAS 316
Query: 130 TMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAK 189
+ G+Q+H +F LG + ++S++ S++ Y L+ A +F ++ + + W+
Sbjct: 317 LSRLVWGEQLHCNVFSLGLNDSLSVSNSMMKMYSTCGKLDSASVLFQGMRCRDIISWSTI 376
Query: 190 IVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDD-DGNCGRQMHANIVKI 248
I + G + F F M + K + +S+L G + +G GRQ+HA
Sbjct: 377 IGGYSQAGFGEEAFKYFSWMRQSGPKPTDFALASLLSVSGNMAVLEG--GRQVHALAFCF 434
Query: 249 GLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEA 305
GLE + V+ L++MY KC +++A ++FE D+ +I S AM+ GY +G EA
Sbjct: 435 GLEQNSTVRSTLINMYSKCGNIKEASKIFEE-TDRDDIVSLTAMINGYAEHGKSKEA 490
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 119/269 (44%), Gaps = 31/269 (11%)
Query: 40 VNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITL 99
+ + +L N ++ M+ +CG+LD+A LF M RD SW+ +I GY +E
Sbjct: 333 LGLNDSLSVSNSMMKMYSTCGKLDSASVLFQGMRCRDIISWSTIIGGYSQAGFGEEAFKY 392
Query: 100 FAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLI 159
F+ M R+ G F + +L +E G+QVH L F G +N ++ +LI
Sbjct: 393 FSWM--RQSGPKPTDFA---LASLLSVSGNMAVLEGGRQVHALAFCFGLEQNSTVRSTLI 447
Query: 160 NFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSY 219
N Y K +++A +F + R + V TA I G + + F++ + +S
Sbjct: 448 NMYSKCGNIKEASKIFEETDRDDIVSLTAMINGYAEHGKSKEAIDLFEKSLKVGFSPDSV 507
Query: 220 TFSSVLKACGGVDDDGNCGRQMHANIVKIGL-------------ESDEYVQCGLVDMYGK 266
TF SVL AC H+ + +G + E+ C +VD+ +
Sbjct: 508 TFISVLTAC------------THSGQLDLGFHYFNLMQEKYNMRPAKEHYGC-MVDLLCR 554
Query: 267 CRLLRDAERVFELIVDKKNIASWNAMLVG 295
L +AE++ + + KK+ W +L+
Sbjct: 555 AGRLSEAEKMIDEMSWKKDDVVWTTLLIA 583
>gi|356495778|ref|XP_003516750.1| PREDICTED: pentatricopeptide repeat-containing protein At5g13270,
chloroplastic-like [Glycine max]
Length = 765
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 96/337 (28%), Positives = 160/337 (47%), Gaps = 13/337 (3%)
Query: 1 MDNLCLPITTDMYTCLIKEC-TFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSC 59
MD + + I Y L K C T S G L H R + N +L M+ C
Sbjct: 83 MDKVGISINPRSYEYLFKMCGTLGALSDGK---LFHNRLQRMANSNKFIDNCILKMYCDC 139
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI 119
+A + FD++ +D +SW+ +I Y + E + LF M+ L + P
Sbjct: 140 KSFTSAERFFDKIVDQDLSSWSTIISAYTEEGRIDEAVRLFLRMLD------LGITPNSS 193
Query: 120 IVCVLKACVCTMNM-ELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL 178
I L +M +LGKQ+H L ++G + NIS+ + N Y K L+ A+ +++
Sbjct: 194 IFSTLIMSFTDPSMLDLGKQIHSQLIRIGFAANISIETLISNMYVKCGWLDGAEVATNKM 253
Query: 179 KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCG 238
R N V T +V + F +M E ++ + + FS +LKAC + D G
Sbjct: 254 TRKNAVACTGLMVGYTKAARNRDALLLFGKMISEGVELDGFVFSIILKACAAL-GDLYTG 312
Query: 239 RQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIR 298
+Q+H+ +K+GLES+ V LVD Y KC A + FE I + N SW+A++ GY +
Sbjct: 313 KQIHSYCIKLGLESEVSVGTPLVDFYVKCARFEAARQAFESI-HEPNDFSWSALIAGYCQ 371
Query: 299 NGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
+G + A + +++ G+ + + ++ ACS++S
Sbjct: 372 SGQFDRALEVFKAIRSKGVLLNSFIYTNIFQACSAVS 408
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 78/278 (28%), Positives = 135/278 (48%), Gaps = 7/278 (2%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+V CG LD A ++M ++ + ++VGY A ++ + LF +M+ +
Sbjct: 236 MYVKCGWLDGAEVATNKMTRKNAVACTGLMVGYTKAARNRDALLLFGKMISEG-----VE 290
Query: 115 FPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFV 174
++ +LKAC ++ GKQ+H KLG +S+ L++FY K E A
Sbjct: 291 LDGFVFSIILKACAALGDLYTGKQIHSYCIKLGLESEVSVGTPLVDFYVKCARFEAARQA 350
Query: 175 FSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDD 234
F + N W+A I C+ G F + FK + + + NS+ ++++ +AC V D
Sbjct: 351 FESIHEPNDFSWSALIAGYCQSGQFDRALEVFKAIRSKGVLLNSFIYTNIFQACSAV-SD 409
Query: 235 GNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLV 294
CG Q+HA+ +K GL + + ++ MY KC + A + F L +DK + +W A++
Sbjct: 410 LICGAQIHADAIKKGLVAYLSGESAMISMYSKCGQVDYAHQAF-LTIDKPDTVAWTAIIC 468
Query: 295 GYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+ +G EA + M+ SG++ L ACS
Sbjct: 469 AHAYHGKAFEALRLFKEMQGSGVRPNAVTFIGLLNACS 506
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 117/257 (45%), Gaps = 31/257 (12%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ +V C + + ARQ F+ + + SW+ +I GY + + +F + R KG +
Sbjct: 334 LVDFYVKCARFEAARQAFESIHEPNDFSWSALIAGYCQSGQFDRALEVFKAI--RSKGVL 391
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
L F I + +AC ++ G Q+H K G +S ++I+ Y K ++ A
Sbjct: 392 LNSF---IYTNIFQACSAVSDLICGAQIHADAIKKGLVAYLSGESAMISMYSKCGQVDYA 448
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
F + + +TV WTA I + G + FKEM ++ N+ TF +L AC
Sbjct: 449 HQAFLTIDKPDTVAWTAIICAHAYHGKAFEALRLFKEMQGSGVRPNAVTFIGLLNACS-- 506
Query: 232 DDDGNCGRQMHANIVKIGLE-----SDEY--------VQCGLVDMYGKCRLLRDAERVFE 278
H+ +VK G + SDEY C ++D+Y + LL++A V
Sbjct: 507 ----------HSGLVKEGKKILDSMSDEYGVNPTIDHYNC-MIDVYSRAGLLQEALEVIR 555
Query: 279 LIVDKKNIASWNAMLVG 295
+ + ++ SW ++L G
Sbjct: 556 SLPFEPDVMSWKSLLGG 572
>gi|168008904|ref|XP_001757146.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691644|gb|EDQ78005.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 527
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 85/309 (27%), Positives = 155/309 (50%), Gaps = 12/309 (3%)
Query: 12 MYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDE 71
MY +++ C KD ++ + I K + N+L+ +++ CG++ AR +FD+
Sbjct: 1 MYVDVLQRCFKHKDLTSVKQVHDCILKS-GMDQNPYVANKLMRVYIRCGKVQDARHVFDK 59
Query: 72 MPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWII-VCVLKACVCT 130
+ ++ +W MI GY + + I ++ +M R++G P + + +LKAC C
Sbjct: 60 LVKKNVFNWTTMIGGYAEHGRPADAIEVYNQM--RQEGGR----PNEVTYLSILKACACP 113
Query: 131 MNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKI 190
+ ++ GK++H + G ++ + +L+N Y K ++DA VF ++ N + W I
Sbjct: 114 VGLKWGKEIHAHISHGGFRSDVPVQTALVNMYAKSGSIKDARLVFDEMAERNVITWNVMI 173
Query: 191 VNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCG--RQMHANIVKI 248
+ G + F+ F +M E +S T+ S+L A G G +++H + VK
Sbjct: 174 GGLAQHGFGQEAFSLFLQMQEEGFVPDSTTYLSILTAT-ACSSAGALGWVKEVHRHAVKA 232
Query: 249 GLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKF 308
G +SD V LV +Y K + DA VFE ++D +++ SW+AM+ G +NG EA
Sbjct: 233 GFDSDMRVCNALVHVYSKSGSVDDARLVFEGMLD-RDVISWSAMIGGLAQNGCGHEAFSL 291
Query: 309 LYLMKASGI 317
M+ G+
Sbjct: 292 FLKMQREGV 300
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 87/307 (28%), Positives = 139/307 (45%), Gaps = 10/307 (3%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
Y ++K C E+ HI + + L+ M+ G + AR +FDEM
Sbjct: 103 YLSILKACACPVGLKWGKEIHAHI-SHGGFRSDVPVQTALVNMYAKSGSIKDARLVFDEM 161
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN 132
R+ +W VMI G QE +LF +M + V + + +L A C+
Sbjct: 162 AERNVITWNVMIGGLAQHGFGQEAFSLFLQMQEEG-----FVPDSTTYLSILTATACSSA 216
Query: 133 MELG--KQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKI 190
LG K+VH K G ++ + +L++ Y K ++DA VF + + + W+A I
Sbjct: 217 GALGWVKEVHRHAVKAGFDSDMRVCNALVHVYSKSGSVDDARLVFEGMLDRDVISWSAMI 276
Query: 191 VNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGL 250
+ G H+ F+ F +M RE + N T+ S+L A +Q+H + K GL
Sbjct: 277 GGLAQNGCGHEAFSLFLKMQREGVIPNVTTYVSILTASASAGAL-EWVKQVHNHARKAGL 335
Query: 251 ESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLY 310
SD V LV MY K + DA VF+ + +N+ +WNAM+ G ++G EA
Sbjct: 336 GSDFRVCNALVHMYAKSGSIDDARLVFDQM-SVRNVFTWNAMIGGLAQHGCGQEAFSLFL 394
Query: 311 LMKASGI 317
M+ G+
Sbjct: 395 RMRREGV 401
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 86/313 (27%), Positives = 143/313 (45%), Gaps = 13/313 (4%)
Query: 26 SAGAFELLNHIRK---RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAV 82
SAGA + + + + + N L+ ++ G +D AR +F+ M RD SW+
Sbjct: 215 SAGALGWVKEVHRHAVKAGFDSDMRVCNALVHVYSKSGSVDDARLVFEGMLDRDVISWSA 274
Query: 83 MIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHG 141
MI G E +LF +M + V P V +L A +E KQVH
Sbjct: 275 MIGGLAQNGCGHEAFSLFLKMQREG------VIPNVTTYVSILTASASAGALEWVKQVHN 328
Query: 142 LLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQ 201
K G + + +L++ Y K ++DA VF Q+ N W A I + G +
Sbjct: 329 HARKAGLGSDFRVCNALVHMYAKSGSIDDARLVFDQMSVRNVFTWNAMIGGLAQHGCGQE 388
Query: 202 VFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLV 261
F+ F M RE + ++ T+ S+L A G +++H V+ GL+SD V LV
Sbjct: 389 AFSLFLRMRREGVVPDAITYMSILNASASTGALGWV-KEVHRQAVQAGLDSDVRVGNALV 447
Query: 262 DMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEA-TKFLYLMKASGIQIQ 320
MY K + DA +F+ +V+ +++ +W AM+ G +N EA + FL + + I +
Sbjct: 448 HMYCKTGSISDARLMFDGMVE-RDVITWTAMISGLAQNECGQEAFSLFLQMQREGFIPVA 506
Query: 321 ESLINDLRIACSS 333
+ + L + S+
Sbjct: 507 TTYASILNVCTST 519
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Query: 239 RQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIR 298
+Q+H I+K G++ + YV L+ +Y +C ++DA VF+ +V KKN+ +W M+ GY
Sbjct: 19 KQVHDCILKSGMDQNPYVANKLMRVYIRCGKVQDARHVFDKLV-KKNVFNWTTMIGGYAE 77
Query: 299 NGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+G +A + M+ G + E + AC+
Sbjct: 78 HGRPADAIEVYNQMRQEGGRPNEVTYLSILKACA 111
>gi|449508249|ref|XP_004163262.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g33170-like [Cucumis sativus]
Length = 840
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 92/299 (30%), Positives = 142/299 (47%), Gaps = 29/299 (9%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR--- 106
N+LL G++D AR+LFD+MP RD +W +MI Y ++ + E LF E
Sbjct: 41 NQLLSELSKNGRVDEARKLFDQMPYRDKYTWNIMISAYANLGNLVEARKLFNETPIXNSI 100
Query: 107 ----------KKG---HMLLVF---------PA-WIIVCVLKACVCTMNMELGKQVHGLL 143
K G L F P+ + + VL+AC + GK +H
Sbjct: 101 TWSSLVSGYCKNGCEVEGLRQFSQMWSDGQKPSQYTLGSVLRACSTLSLLHTGKMIHCYA 160
Query: 144 FKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK-RHNTVVWTAKIVNNCREGHFHQV 202
K+ NI + L++ Y K +CL +A+++F L R N V WTA + + G +
Sbjct: 161 IKIQLEANIFVATGLVDMYSKCKCLLEAEYLFFSLPDRKNYVQWTAMLTGYAQNGESLKA 220
Query: 203 FNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVD 262
FKEM + ++ N +TF S+L AC + GRQ+H I+ G + YVQ LVD
Sbjct: 221 IQCFKEMRNQGMESNHFTFPSILTACTSISAYA-FGRQVHGCIIWSGFGPNVYVQSALVD 279
Query: 263 MYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQE 321
MY KC L A + + ++ ++ WN+M+VG + +G EA + M I+I +
Sbjct: 280 MYAKCGDLASARMILD-TMEIDDVVCWNSMIVGCVTHGYMEEALVLFHKMHNRDIRIDD 337
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 81/278 (29%), Positives = 135/278 (48%), Gaps = 13/278 (4%)
Query: 44 PTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEM 103
P + + L+ M+ CG L +AR + D M + D W MIVG V +E + LF +M
Sbjct: 269 PNVYVQSALVDMYAKCGDLASARMILDTMEIDDVVCWNSMIVGCVTHGYMEEALVLFHKM 328
Query: 104 MKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYG 163
R +P+ VLK+ N+++G+ VH L K G +++ +L++ Y
Sbjct: 329 HNRDIRIDDFTYPS-----VLKSLASCKNLKIGESVHSLTIKTGFDACKTVSNALVDMYA 383
Query: 164 KFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSS 223
K L A VF+++ + + WT+ + G + F +M R+ + + +
Sbjct: 384 KQGNLSCALDVFNKILDKDVISWTSLVTGYVHNGFHEKALQLFCDMRTARVDLDQFVVAC 443
Query: 224 VLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
V AC + GRQ+HAN +K S + L+ MY KC L DA RV + + +
Sbjct: 444 VFSACAELTVI-EFGRQVHANFIKSSAGSLLSAENSLITMYAKCGCLEDAIRVXDSM-ET 501
Query: 284 KNIASWNAMLVGYIRNGL------YVEATKFLYLMKAS 315
+N+ SW A++VGY +NGL Y E+ + +Y +K +
Sbjct: 502 RNVISWTAIIVGYAQNGLVETGQSYFESMEKVYGIKPA 539
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/298 (25%), Positives = 139/298 (46%), Gaps = 8/298 (2%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLR-DFNSWAVMIVGYVDVADYQECI 97
++ ++ + L+ M+ C L A LF +P R ++ W M+ GY + + I
Sbjct: 162 KIQLEANIFVATGLVDMYSKCKCLLEAEYLFFSLPDRKNYVQWTAMLTGYAQNGESLKAI 221
Query: 98 TLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGS 157
F EM + FP+ +L AC G+QVHG + G N+ + +
Sbjct: 222 QCFKEMRNQGMESNHFTFPS-----ILTACTSISAYAFGRQVHGCIIWSGFGPNVYVQSA 276
Query: 158 LINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKN 217
L++ Y K L A + ++ + V W + IV G+ + F +M I+ +
Sbjct: 277 LVDMYAKCGDLASARMILDTMEIDDVVCWNSMIVGCVTHGYMEEALVLFHKMHNRDIRID 336
Query: 218 SYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVF 277
+T+ SVLK+ + G +H+ +K G ++ + V LVDMY K L A VF
Sbjct: 337 DFTYPSVLKSLASC-KNLKIGESVHSLTIKTGFDACKTVSNALVDMYAKQGNLSCALDVF 395
Query: 278 ELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
I+D K++ SW +++ GY+ NG + +A + M+ + + + + ++ + AC+ ++
Sbjct: 396 NKILD-KDVISWTSLVTGYVHNGFHEKALQLFCDMRTARVDLDQFVVACVFSACAELT 452
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 97/179 (54%), Gaps = 1/179 (0%)
Query: 158 LINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKN 217
+I+ Y L +A +F++ N++ W++ + C+ G + F +M + K +
Sbjct: 74 MISAYANLGNLVEARKLFNETPIXNSITWSSLVSGYCKNGCEVEGLRQFSQMWSDGQKPS 133
Query: 218 SYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVF 277
YT SVL+AC + + G+ +H +KI LE++ +V GLVDMY KC+ L +AE +F
Sbjct: 134 QYTLGSVLRACSTLSLL-HTGKMIHCYAIKIQLEANIFVATGLVDMYSKCKCLLEAEYLF 192
Query: 278 ELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+ D+KN W AML GY +NG ++A + M+ G++ + AC+SISA
Sbjct: 193 FSLPDRKNYVQWTAMLTGYAQNGESLKAIQCFKEMRNQGMESNHFTFPSILTACTSISA 251
>gi|357436397|ref|XP_003588474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355477522|gb|AES58725.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 668
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 100/341 (29%), Positives = 166/341 (48%), Gaps = 22/341 (6%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCG 60
++N L +Y L+K CT + H+ + L+ N +L M+ CG
Sbjct: 82 INNGSLEPDRTIYNKLLKRCTMLGKLKQGKLVHTHLMNS-KFRNDLVIKNSILFMYAKCG 140
Query: 61 QLDTARQLFDEMPLRDFNSWAVMIVGYVD---VADYQECITLFAEMMKRKKGHMLLVFPA 117
L+ ARQ+FDEM ++D +W MI GY + + LF EM++ +
Sbjct: 141 SLEIARQVFDEMCVKDVVTWTSMITGYSQDGYASSATTALVLFLEMVRDGLRPNEFALSS 200
Query: 118 WIIVC-VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFS 176
+ C L +CV GKQ+HG +K G N+ + SL++ Y + L ++ VF
Sbjct: 201 LVKCCGFLGSCVD------GKQIHGCCWKYGFQENVFVGSSLVDMYARCGELRESRLVFD 254
Query: 177 QLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL---KACGGVDD 233
+L+ N V W A I R+G + F +M RE +T+S++L G ++
Sbjct: 255 ELESKNEVSWNALISGFARKGEGEEALGLFVKMQREGFGATEFTYSALLCSSSTTGSLEQ 314
Query: 234 DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
G+ +HA+++K G + YV L+ MY K + DA++VF+ +V K ++ S N+ML
Sbjct: 315 ----GKWLHAHMMKSGKKLVGYVGNTLLHMYAKSGNICDAKKVFDRLV-KVDVVSCNSML 369
Query: 294 VGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRI--ACS 332
+GY ++GL EA + M ++I+ + I L + ACS
Sbjct: 370 IGYAQHGLGKEAVELFEEMML-WVEIEPNDITFLSVLTACS 409
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 107/219 (48%), Gaps = 9/219 (4%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
+LK C ++ GK VH L ++ + S++ Y K LE A VF ++ +
Sbjct: 97 LLKRCTMLGKLKQGKLVHTHLMNSKFRNDLVIKNSILFMYAKCGSLEIARQVFDEMCVKD 156
Query: 183 TVVWTAKIVNNCREGHFHQVFND---FKEMGRERIKKNSYTFSSVLKACGGVDDDGNC-- 237
V WT+ I ++G+ F EM R+ ++ N + SS++K CG + G+C
Sbjct: 157 VVTWTSMITGYSQDGYASSATTALVLFLEMVRDGLRPNEFALSSLVKCCGFL---GSCVD 213
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYI 297
G+Q+H K G + + +V LVDMY +C LR++ VF+ + + KN SWNA++ G+
Sbjct: 214 GKQIHGCCWKYGFQENVFVGSSLVDMYARCGELRESRLVFDEL-ESKNEVSWNALISGFA 272
Query: 298 RNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
R G EA M+ G E + L + S+ +
Sbjct: 273 RKGEGEEALGLFVKMQREGFGATEFTYSALLCSSSTTGS 311
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 118/247 (47%), Gaps = 11/247 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+ L+ M+ CG+L +R +FDE+ ++ SW +I G+ + +E + LF +M + G
Sbjct: 234 SSLVDMYARCGELRESRLVFDELESKNEVSWNALISGFARKGEGEEALGLFVKMQREGFG 293
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ A +L + T ++E GK +H + K G + +L++ Y K +
Sbjct: 294 ATEFTYSA-----LLCSSSTTGSLEQGKWLHAHMMKSGKKLVGYVGNTLLHMYAKSGNIC 348
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRE-RIKKNSYTFSSVLKAC 228
DA VF +L + + V + ++ + G + F+EM I+ N TF SVL AC
Sbjct: 349 DAKKVFDRLVKVDVVSCNSMLIGYAQHGLGKEAVELFEEMMLWVEIEPNDITFLSVLTAC 408
Query: 229 --GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
G+ D+G ++ + K GLE +VD++G+ LL A+ E + + N
Sbjct: 409 SHAGLLDEGLYYFEL---MKKYGLEPKLSHYTTVVDLFGRAGLLDQAKSFIEEMPIEPNA 465
Query: 287 ASWNAML 293
W A+L
Sbjct: 466 TIWGALL 472
>gi|359488555|ref|XP_003633777.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g01510-like, partial [Vitis vinifera]
Length = 825
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 86/287 (29%), Positives = 142/287 (49%), Gaps = 15/287 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEM----MK 105
N LL + + AR+LFDEMP +D S+ V+I GY ++ LF E+
Sbjct: 289 NALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFD 348
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
RK+ FP +L T++ E+G+Q+H + I + SL++ Y K
Sbjct: 349 RKQ------FP---FATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKC 399
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
E+A+ +F+ L + V WTA I ++G + + F +M + + + TF+S+L
Sbjct: 400 GKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLL 459
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
+A + + G+Q+H+ I+K G S+ + L+D+Y KC ++DA + F+ + D +N
Sbjct: 460 RASASI-ASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPD-RN 517
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
I SWNAM+ Y +NG K M SG+Q + ACS
Sbjct: 518 IVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACS 564
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/291 (26%), Positives = 134/291 (46%), Gaps = 7/291 (2%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L+ N L+ + +LD A QLF EMP D S+ MI GY ++ + LF EM
Sbjct: 184 LIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSVSYNAMITGYSKDGLDEKAVNLFVEMQN 243
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
F A VL A + ++ LG+Q+H + K N+ ++ +L++FY K
Sbjct: 244 SGLKPTEFTFAA-----VLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKH 298
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
+ DA +F ++ + V + I +G F+ F+E+ + + F+++L
Sbjct: 299 DSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATML 358
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
D GRQ+HA + +S+ V LVDMY KC +AE +F + +
Sbjct: 359 SIASNT-LDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSA 417
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+ W AM+ Y++ G Y E + M+ + + ++ L A +SI++
Sbjct: 418 VP-WTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIAS 467
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 113/251 (45%), Gaps = 11/251 (4%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
+L N L+ M+ CG+ + A +F + R W MI YV Y+E + LF +M +
Sbjct: 386 ILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQ 445
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
++ +L+A ++ LGKQ+H + K G N+ +L++ Y K
Sbjct: 446 AS-----VIADQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKC 500
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
++DA F ++ N V W A I + G FKEM ++ +S +F VL
Sbjct: 501 GSIKDAVQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVL 560
Query: 226 KAC--GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVF-ELIVD 282
AC G+ ++G I K+ + Y +VDM + +AE++ E+ +D
Sbjct: 561 SACSHSGLVEEGLWHFNSMTQIYKLDPRREHY--ASVVDMLCRSGRFNEAEKLMAEMPID 618
Query: 283 KKNIASWNAML 293
I W+++L
Sbjct: 619 PDEIM-WSSVL 628
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 126/254 (49%), Gaps = 13/254 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N ++ +V G L AR+LFD M R +W ++I GY + ++E LF +M +
Sbjct: 87 NMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTE 146
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQ---VHGLLFKLGSSRNISLTGSLINFYGKFR 166
+ F V +L C E+G Q V + KLG + + +L++ Y K
Sbjct: 147 PDYVTF-----VTLLSGC---NGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSN 198
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
L+ A +F ++ ++V + A I ++G + N F EM +K +TF++VL
Sbjct: 199 RLDLACQLFKEMPEIDSVSYNAMITGYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVLC 258
Query: 227 ACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
A G+DD G+Q+H+ ++K + +V L+D Y K + DA ++F+ + ++ +
Sbjct: 259 ANIGLDDIV-LGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGV 317
Query: 287 ASWNAMLVGYIRNG 300
S+N ++ GY +G
Sbjct: 318 -SYNVIISGYAWDG 330
>gi|357480155|ref|XP_003610363.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355511418|gb|AES92560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 734
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 86/284 (30%), Positives = 141/284 (49%), Gaps = 9/284 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ CG LD A + F+ ++ +W+ M+ GY D + + LF +M
Sbjct: 258 NALVTMYAKCGSLDDAVRTFEFSGDKNSITWSAMVTGYAQGGDSDKALKLFNKM------ 311
Query: 110 HMLLVFPA-WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
H V P+ + +V V+ AC + GKQ+H FKLG + + ++++ Y K L
Sbjct: 312 HSSGVLPSEFTLVGVINACSDLCAVVEGKQMHSFAFKLGFGLQLYVLSAVVDMYAKCGSL 371
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
DA F +++ + V+WT+ I + G + N + +M ER+ N T +SVL+AC
Sbjct: 372 ADARKGFECVQQPDVVLWTSIITGYVQNGDYEGGLNLYGKMQMERVIPNELTMASVLRAC 431
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
+ + G+QMHA I+K G + + + L MY KC L D +F + +++ S
Sbjct: 432 SSLAAL-DQGKQMHARIIKYGFKLEVPIGSALSAMYTKCGSLDDGYLIF-WRMPSRDVIS 489
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
WNAM+ G +NG +A + M GI+ +L ACS
Sbjct: 490 WNAMISGLSQNGHGNKALELFEKMLLEGIKPDPVTFVNLLSACS 533
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 88/293 (30%), Positives = 143/293 (48%), Gaps = 19/293 (6%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYV--DVADYQECITLFAEMMKRK 107
+ LL M+ G + AR+LFD MP R+ SWA MI GY D+AD + + +F E+M+R+
Sbjct: 157 SSLLNMYCKTGFVFDARKLFDRMPERNTVSWATMISGYASSDIAD--KAVEVF-ELMRRE 213
Query: 108 KGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
+ + + + VL A + + G+QVH L K G +S+ +L+ Y K
Sbjct: 214 EE----IQNEFALTSVLSALTSDVFVYTGRQVHSLAIKNGLLAIVSVANALVTMYAKCGS 269
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
L+DA F N++ W+A + + G + F +M + + +T V+ A
Sbjct: 270 LDDAVRTFEFSGDKNSITWSAMVTGYAQGGDSDKALKLFNKMHSSGVLPSEFTLVGVINA 329
Query: 228 CGGVDDDGNC----GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
C + C G+QMH+ K+G YV +VDMY KC L DA + FE V +
Sbjct: 330 CSDL-----CAVVEGKQMHSFAFKLGFGLQLYVLSAVVDMYAKCGSLADARKGFE-CVQQ 383
Query: 284 KNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
++ W +++ GY++NG Y M+ + E + + ACSS++A
Sbjct: 384 PDVVLWTSIITGYVQNGDYEGGLNLYGKMQMERVIPNELTMASVLRACSSLAA 436
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 98/324 (30%), Positives = 143/324 (44%), Gaps = 14/324 (4%)
Query: 19 ECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFN 78
ECT K+ L I K +I ++ N L ++ L A LFD + D +
Sbjct: 20 ECTHNKNILKGRTLHARILKTGSIS-SIYVTNTFLNLYAKTNHLSHALTLFDSINDNDKD 78
Query: 79 --SWAVMIVGYVD---VADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTMN 132
SW +I + + I+LF MM+ V P A + V A +
Sbjct: 79 DVSWNSLINAFSQNHSSSSSSFAISLFRRMMRANN-----VIPNAHTLAGVFSAASNLSD 133
Query: 133 MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192
+ GKQ H + K G S ++ + SL+N Y K + DA +F ++ NTV W I
Sbjct: 134 VVAGKQAHSVAVKTGCSGDVYVGSSLLNMYCKTGFVFDARKLFDRMPERNTVSWATMISG 193
Query: 193 NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLES 252
+ F+ M RE +N + +SVL A D GRQ+H+ +K GL +
Sbjct: 194 YASSDIADKAVEVFELMRREEEIQNEFALTSVLSALTS-DVFVYTGRQVHSLAIKNGLLA 252
Query: 253 DEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLM 312
V LV MY KC L DA R FE DK +I +W+AM+ GY + G +A K M
Sbjct: 253 IVSVANALVTMYAKCGSLDDAVRTFEFSGDKNSI-TWSAMVTGYAQGGDSDKALKLFNKM 311
Query: 313 KASGIQIQESLINDLRIACSSISA 336
+SG+ E + + ACS + A
Sbjct: 312 HSSGVLPSEFTLVGVINACSDLCA 335
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 67/251 (26%), Positives = 114/251 (45%), Gaps = 11/251 (4%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L L+ ++ M+ CG L AR+ F+ + D W +I GYV DY+ + L+ +M
Sbjct: 355 LYVLSAVVDMYAKCGSLADARKGFECVQQPDVVLWTSIITGYVQNGDYEGGLNLYGKM-- 412
Query: 106 RKKGHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
M V P + + VL+AC ++ GKQ+H + K G + + +L Y K
Sbjct: 413 ----QMERVIPNELTMASVLRACSSLAALDQGKQMHARIIKYGFKLEVPIGSALSAMYTK 468
Query: 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
L+D +F ++ + + W A I + GH ++ F++M E IK + TF ++
Sbjct: 469 CGSLDDGYLIFWRMPSRDVISWNAMISGLSQNGHGNKALELFEKMLLEGIKPDPVTFVNL 528
Query: 225 LKACG--GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282
L AC G+ D G +M + I + Y C +VD+ + L +A+ E
Sbjct: 529 LSACSHMGLVDRGWEYFKMMFDEFNIAPMVEHYA-C-MVDILSRAGKLNEAKEFIESATV 586
Query: 283 KKNIASWNAML 293
+ W +L
Sbjct: 587 DHGLCLWRILL 597
>gi|255546963|ref|XP_002514539.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223546143|gb|EEF47645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 332
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 82/284 (28%), Positives = 137/284 (48%), Gaps = 9/284 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ ++ G+LD+AR LFDEMP R+ +W ++ G + +E + LF +M +
Sbjct: 27 NILINAYIHSGELDSARNLFDEMPERNVATWNAVVAGLIQFEINEEGLNLFRDMYE---- 82
Query: 110 HMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
L P + + VL+ C +M G+QVH + K G N+ + SL + Y K L
Sbjct: 83 --LGFLPDEYTLGSVLRGCAGLKSMYAGRQVHCYVVKCGFEFNLVVGSSLAHMYMKSGSL 140
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+ + V + N V W I + GH +V + + M + + TF+SV+ +C
Sbjct: 141 SEGERVIKSMPSRNIVAWNTLIAGKSQNGHSEEVLDLYNMMRIMGFRPDKITFASVISSC 200
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
+ G G+Q+HA ++K G S V L+ MY +C L D+ +VF L ++
Sbjct: 201 SELTTLGQ-GQQIHAEVIKAGASSVVAVTSSLISMYSRCGCLEDSVKVF-LECKDVDVIL 258
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
W++M+ Y +G EA K + M+ ++ + L ACS
Sbjct: 259 WSSMIAAYGFHGRGEEAIKLFHQMEQENLEANDVTFLSLLYACS 302
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 94/193 (48%), Gaps = 9/193 (4%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L+ + L M++ G L ++ MP R+ +W +I G +E + L+ MM+
Sbjct: 124 LVVGSSLAHMYMKSGSLSEGERVIKSMPSRNIVAWNTLIAGKSQNGHSEEVLDLY-NMMR 182
Query: 106 RKKGHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
++ P I V+ +C + G+Q+H + K G+S +++T SLI+ Y +
Sbjct: 183 -----IMGFRPDKITFASVISSCSELTTLGQGQQIHAEVIKAGASSVVAVTSSLISMYSR 237
Query: 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
CLED+ VF + K + ++W++ I G + F +M +E ++ N TF S+
Sbjct: 238 CGCLEDSVKVFLECKDVDVILWSSMIAAYGFHGRGEEAIKLFHQMEQENLEANDVTFLSL 297
Query: 225 LKACG--GVDDDG 235
L AC G+ D G
Sbjct: 298 LYACSHCGLKDKG 310
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 86/194 (44%), Gaps = 2/194 (1%)
Query: 142 LLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQ 201
LLF RNI LIN Y L+ A +F ++ N W A + + +
Sbjct: 13 LLFNSMPMRNIMSCNILINAYIHSGELDSARNLFDEMPERNVATWNAVVAGLIQFEINEE 72
Query: 202 VFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLV 261
N F++M + YT SVL+ C G+ GRQ+H +VK G E + V L
Sbjct: 73 GLNLFRDMYELGFLPDEYTLGSVLRGCAGLKSM-YAGRQVHCYVVKCGFEFNLVVGSSLA 131
Query: 262 DMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQE 321
MY K L + ERV + + +NI +WN ++ G +NG E +M+ G + +
Sbjct: 132 HMYMKSGSLSEGERVIKSM-PSRNIVAWNTLIAGKSQNGHSEEVLDLYNMMRIMGFRPDK 190
Query: 322 SLINDLRIACSSIS 335
+ +CS ++
Sbjct: 191 ITFASVISSCSELT 204
>gi|359492337|ref|XP_002284789.2| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
mitochondrial-like [Vitis vinifera]
Length = 694
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 88/286 (30%), Positives = 136/286 (47%), Gaps = 12/286 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+RL+ M+ G + A++LFDEMP +D SW ++ G C+ F M
Sbjct: 158 DRLVSMYFKLGYDEDAQRLFDEMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGR 217
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
V ++ V+ AC ++ GK +HG++ KLG S + SLIN YGK L+
Sbjct: 218 QPNEV----TLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLD 273
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A +F ++ + V W + +V + G+ + + F M R I + T ++L+AC
Sbjct: 274 AASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRAC- 332
Query: 230 GVDDDGNCGRQ---MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
D GRQ +HA I + G +D + L+++Y K L +E +FE I D+ I
Sbjct: 333 ---TDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDRI 389
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
A W AML GY + EA K LM G+++ L ACS
Sbjct: 390 A-WTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACS 434
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 121/248 (48%), Gaps = 11/248 (4%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
+N L+ M+ G LD A QLF+EMP+R SW M+V + ++ + LF +MKR
Sbjct: 259 VNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLF-NLMKRAG 317
Query: 109 GHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
+ P +V +L+AC T + +H + + G + +I + +L+N Y K
Sbjct: 318 -----INPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGR 372
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
L ++ +F ++K + + WTA + + F M +E ++ + TF+ +L A
Sbjct: 373 LNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSA 432
Query: 228 C--GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
C G+ ++G ++ + + ++ D Y C +VD+ G+ L DA + + + + +
Sbjct: 433 CSHSGLVEEGKKYFEIMSEVYRVEPRLDHY-SC-MVDLLGRSGRLEDAYELIKSMPMEPS 490
Query: 286 IASWNAML 293
W A+L
Sbjct: 491 SGVWGALL 498
Score = 42.0 bits (97), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 84/192 (43%), Gaps = 11/192 (5%)
Query: 8 ITTDMYT--CLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTA 65
I D T L++ CT A + +I R ++ LL ++ G+L+ +
Sbjct: 318 INPDQATMVALLRACTDTGLGRQAESIHAYIH-RCGFNADIIIATALLNLYAKLGRLNAS 376
Query: 66 RQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLK 125
+F+E+ RD +W M+ GY A +E I LF M+K + F +L
Sbjct: 377 EDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTF-----THLLS 431
Query: 126 ACVCTMNMELGKQVHGLLFKLGS-SRNISLTGSLINFYGKFRCLEDA-DFVFSQLKRHNT 183
AC + +E GK+ ++ ++ + +++ G+ LEDA + + S ++
Sbjct: 432 ACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSS 491
Query: 184 VVWTAKIVNNCR 195
VW A ++ CR
Sbjct: 492 GVWGA-LLGACR 502
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 4/98 (4%)
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
+HA ++K SD ++ LV MY K DA+R+F+ + + K++ SWN+++ G G
Sbjct: 141 IHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPN-KDLVSWNSLMSGLSGRG 199
Query: 301 LYVEA--TKFLYLMKASGIQIQESLINDLRIACSSISA 336
Y+ A F + SG Q E + + AC+ + A
Sbjct: 200 -YLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGA 236
>gi|15227623|ref|NP_178437.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75216181|sp|Q9ZQ74.1|PP146_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g03380, mitochondrial; Flags: Precursor
gi|4335760|gb|AAD17437.1| unknown protein [Arabidopsis thaliana]
gi|330250600|gb|AEC05694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 689
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 88/288 (30%), Positives = 146/288 (50%), Gaps = 8/288 (2%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
L LL M+ CG++ +A ++F+++ LR+ W MI GYV +E + LF M +
Sbjct: 179 LTGLLDMYAKCGEIKSAHKVFNDITLRNVVCWTSMIAGYVKNDLCEEGLVLFNRMRENN- 237
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
++ + ++ AC + GK HG L K G + L SL++ Y K +
Sbjct: 238 ----VLGNEYTYGTLIMACTKLSALHQGKWFHGCLVKSGIELSSCLVTSLLDMYVKCGDI 293
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+A VF++ + V+WTA IV G ++ + F++M IK N T +SVL C
Sbjct: 294 SNARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEALSLFQKMKGVEIKPNCVTIASVLSGC 353
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
G +++ GR +H +K+G+ D V LV MY KC RDA+ VFE+ +K+I +
Sbjct: 354 GLIENL-ELGRSVHGLSIKVGIW-DTNVANALVHMYAKCYQNRDAKYVFEM-ESEKDIVA 410
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
WN+++ G+ +NG EA + M + + + L AC+S+ +
Sbjct: 411 WNSIISGFSQNGSIHEALFLFHRMNSESVTPNGVTVASLFSACASLGS 458
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 88/296 (29%), Positives = 139/296 (46%), Gaps = 12/296 (4%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
+ I+ + + LL M+V CG + AR++F+E D W MIVGY E ++
Sbjct: 270 KSGIELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEALS 329
Query: 99 LFAEMMKRKKGHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGS 157
LF +M KG + + P + I VL C N+ELG+ VHGL K+G + ++ +
Sbjct: 330 LFQKM----KG--VEIKPNCVTIASVLSGCGLIENLELGRSVHGLSIKVGI-WDTNVANA 382
Query: 158 LINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKN 217
L++ Y K DA +VF + V W + I + G H+ F M E + N
Sbjct: 383 LVHMYAKCYQNRDAKYVFEMESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNSESVTPN 442
Query: 218 SYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCG--LVDMYGKCRLLRDAER 275
T +S+ AC + G +HA VK+G + V G L+D Y KC + A
Sbjct: 443 GVTVASLFSACASLGSLA-VGSSLHAYSVKLGFLASSSVHVGTALLDFYAKCGDPQSARL 501
Query: 276 VFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
+F+ I ++KN +W+AM+ GY + G + + + M + ES + AC
Sbjct: 502 IFDTI-EEKNTITWSAMIGGYGKQGDTIGSLELFEEMLKKQQKPNESTFTSILSAC 556
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 80/266 (30%), Positives = 127/266 (47%), Gaps = 10/266 (3%)
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI 119
G AR +FD++P DF W VM+ Y + E + L+ +MK + +VF
Sbjct: 90 GYTKDARLVFDQIPEPDFYLWKVMLRCYCLNKESVEVVKLYDLLMKHGFRYDDIVFSK-- 147
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
LKAC +++ GK++H L K+ S N+ LTG L++ Y K ++ A VF+ +
Sbjct: 148 ---ALKACTELQDLDNGKKIHCQLVKVPSFDNVVLTG-LLDMYAKCGEIKSAHKVFNDIT 203
Query: 180 RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGR 239
N V WT+ I + + F M + N YT+ +++ AC + G+
Sbjct: 204 LRNVVCWTSMIAGYVKNDLCEEGLVLFNRMRENNVLGNEYTYGTLIMACTKLSALHQ-GK 262
Query: 240 QMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRN 299
H +VK G+E + L+DMY KC + +A RVF ++ W AM+VGY N
Sbjct: 263 WFHGCLVKSGIELSSCLVTSLLDMYVKCGDISNARRVFNE-HSHVDLVMWTAMIVGYTHN 321
Query: 300 GLYVEATKFLYLMKASGIQIQESLIN 325
G EA MK G++I+ + +
Sbjct: 322 GSVNEALSLFQKMK--GVEIKPNCVT 345
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 105/215 (48%), Gaps = 4/215 (1%)
Query: 122 CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH 181
C L CT N++ +Q HG+L G +IS+ L++ YG F +DA VF Q+
Sbjct: 47 CFLLLSKCT-NIDSLRQSHGVLTGNGLMGDISIATKLVSLYGFFGYTKDARLVFDQIPEP 105
Query: 182 NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQM 241
+ +W + C +V + + + + + FS LKAC + D N G+++
Sbjct: 106 DFYLWKVMLRCYCLNKESVEVVKLYDLLMKHGFRYDDIVFSKALKACTELQDLDN-GKKI 164
Query: 242 HANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGL 301
H +VK+ D V GL+DMY KC ++ A +VF I +N+ W +M+ GY++N L
Sbjct: 165 HCQLVKVP-SFDNVVLTGLLDMYAKCGEIKSAHKVFNDIT-LRNVVCWTSMIAGYVKNDL 222
Query: 302 YVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
E M+ + + E L +AC+ +SA
Sbjct: 223 CEEGLVLFNRMRENNVLGNEYTYGTLIMACTKLSA 257
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 116/251 (46%), Gaps = 13/251 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ C Q A+ +F+ +D +W +I G+ E + LF M
Sbjct: 381 NALVHMYAKCYQNRDAKYVFEMESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNSES-- 438
Query: 110 HMLLVFPAWIIVCVL-KACVCTMNMELGKQVHGLLFKLG--SSRNISLTGSLINFYGKFR 166
V P + V L AC ++ +G +H KLG +S ++ + +L++FY K
Sbjct: 439 ----VTPNGVTVASLFSACASLGSLAVGSSLHAYSVKLGFLASSSVHVGTALLDFYAKCG 494
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
+ A +F ++ NT+ W+A I ++G F+EM +++ K N TF+S+L
Sbjct: 495 DPQSARLIFDTIEEKNTITWSAMIGGYGKQGDTIGSLELFEEMLKKQQKPNESTFTSILS 554
Query: 227 ACGGVDDDGNCGRQMHANIVKIG--LESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
ACG N G++ +++ K S ++ C +VDM + L A + E + +
Sbjct: 555 ACGHTGMV-NEGKKYFSSMYKDYNFTPSTKHYTC-MVDMLARAGELEQALDIIEKMPIQP 612
Query: 285 NIASWNAMLVG 295
++ + A L G
Sbjct: 613 DVRCFGAFLHG 623
>gi|296082276|emb|CBI21281.3| unnamed protein product [Vitis vinifera]
Length = 785
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 86/287 (29%), Positives = 142/287 (49%), Gaps = 15/287 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEM----MK 105
N LL + + AR+LFDEMP +D S+ V+I GY ++ LF E+
Sbjct: 249 NALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFD 308
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
RK+ FP +L T++ E+G+Q+H + I + SL++ Y K
Sbjct: 309 RKQ------FP---FATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKC 359
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
E+A+ +F+ L + V WTA I ++G + + F +M + + + TF+S+L
Sbjct: 360 GKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLL 419
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
+A + + G+Q+H+ I+K G S+ + L+D+Y KC ++DA + F+ + D +N
Sbjct: 420 RASASI-ASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPD-RN 477
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
I SWNAM+ Y +NG K M SG+Q + ACS
Sbjct: 478 IVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACS 524
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 113/251 (45%), Gaps = 11/251 (4%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
+L N L+ M+ CG+ + A +F + R W MI YV Y+E + LF +M +
Sbjct: 346 ILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQ 405
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
++ +L+A ++ LGKQ+H + K G N+ +L++ Y K
Sbjct: 406 AS-----VIADQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKC 460
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
++DA F ++ N V W A I + G FKEM ++ +S +F VL
Sbjct: 461 GSIKDAVQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVL 520
Query: 226 KAC--GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVF-ELIVD 282
AC G+ ++G I K+ + Y +VDM + +AE++ E+ +D
Sbjct: 521 SACSHSGLVEEGLWHFNSMTQIYKLDPRREHY--ASVVDMLCRSGRFNEAEKLMAEMPID 578
Query: 283 KKNIASWNAML 293
I W+++L
Sbjct: 579 PDEIM-WSSVL 588
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 104/220 (47%), Gaps = 2/220 (0%)
Query: 117 AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFS 176
++ VL A + ++ LG+Q+H + K N+ ++ +L++FY K + DA +F
Sbjct: 210 SFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFD 269
Query: 177 QLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGN 236
++ + V + I +G F+ F+E+ + + F+++L D
Sbjct: 270 EMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNT-LDWE 328
Query: 237 CGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGY 296
GRQ+HA + +S+ V LVDMY KC +AE +F + + + W AM+ Y
Sbjct: 329 MGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVP-WTAMISAY 387
Query: 297 IRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
++ G Y E + M+ + + ++ L A +SI++
Sbjct: 388 VQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIAS 427
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 115/254 (45%), Gaps = 48/254 (18%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N ++ +V G L AR+LFD M R +W ++I GY + ++E LF +M +
Sbjct: 82 NMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTE 141
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGK---QVHGLLFKLGSSRNISLTGSLINFYGKFR 166
+ F V +L C E+G QV + KLG + + +L++ Y K
Sbjct: 142 PDYVTF-----VTLLSGC---NGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSN 193
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
L+ A C Q+F + E+ +S+TF++VL
Sbjct: 194 RLDLA----------------------C------QLFKEMPEI-------DSFTFAAVLC 218
Query: 227 ACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
A G+DD G+Q+H+ ++K + +V L+D Y K + DA ++F+ + ++ +
Sbjct: 219 ANIGLDDIV-LGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGV 277
Query: 287 ASWNAMLVGYIRNG 300
S+N ++ GY +G
Sbjct: 278 -SYNVIISGYAWDG 290
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 1/136 (0%)
Query: 143 LFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQV 202
LF+ +N T +I+ Y K L +A +F + V WT I + F +
Sbjct: 69 LFEKMPHKNTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEA 128
Query: 203 FNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVD 262
F F +M R + + TF ++L C G + GN Q+ I+K+G +S V LVD
Sbjct: 129 FELFVQMQRCGTEPDYVTFVTLLSGCNG-HEMGNQITQVQTQIIKLGYDSRLIVGNTLVD 187
Query: 263 MYGKCRLLRDAERVFE 278
Y K L A ++F+
Sbjct: 188 SYCKSNRLDLACQLFK 203
>gi|357151953|ref|XP_003575959.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14850-like [Brachypodium distachyon]
Length = 689
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 90/281 (32%), Positives = 141/281 (50%), Gaps = 12/281 (4%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSW-AVMIVGYVDVADYQECITLFAEMMKRKKGHMLL 113
M+ G L AR+LF+EMP R+ +W AVM +D + T A R+ G M
Sbjct: 158 MYFKTGCLGLARRLFEEMPNRNVIAWNAVMTNAVIDGRPLE---TFKAYFGLREAGGM-- 212
Query: 114 VFPAWIIVCVL-KACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDAD 172
P + VC AC M + LG+Q HG + G ++S++ ++++FYGK RC A
Sbjct: 213 --PNVVSVCAFFNACAGAMFLSLGEQFHGFVVTCGFDMDVSVSNAMVDFYGKCRCAGKAR 270
Query: 173 FVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVD 232
VF ++ N+V W + IV + G + + + SSVL C G+
Sbjct: 271 AVFDGMRVRNSVSWCSMIVAYAQHGAEEDALAVYMGARNTGEEPTDFMVSSVLTTCAGLL 330
Query: 233 DDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAM 292
N GR +HA V+ ++++ +V LVDMYGKC + DAE+VF L + ++N+ +WNAM
Sbjct: 331 GL-NFGRALHAVAVRSCIDANIFVASALVDMYGKCGGVEDAEQVF-LDMPERNLVTWNAM 388
Query: 293 LVGYIRNGLYVEATK-FLYLMKASGIQIQESLINDLRIACS 332
+ GY G A F ++++ G + ++ ACS
Sbjct: 389 IGGYAHIGDAQNALAVFDAMIRSGGTSPNHITLVNVITACS 429
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 110/252 (43%), Gaps = 20/252 (7%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N ++ + C AR +FD M +R+ SW MIV Y ++ + ++ M R G
Sbjct: 254 NAMVDFYGKCRCAGKARAVFDGMRVRNSVSWCSMIVAYAQHGAEEDALAVY--MGARNTG 311
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
F ++ VL C + + G+ +H + + NI + +L++ YGK +E
Sbjct: 312 EEPTDF---MVSSVLTTCAGLLGLNFGRALHAVAVRSCIDANIFVASALVDMYGKCGGVE 368
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRE-RIKKNSYTFSSVLKAC 228
DA+ VF + N V W A I G F M R N T +V+ AC
Sbjct: 369 DAEQVFLDMPERNLVTWNAMIGGYAHIGDAQNALAVFDAMIRSGGTSPNHITLVNVITAC 428
Query: 229 --GGVDDDG----NCGRQMHANIVKIGLES-DEYVQCGLVDMYGKCRLLRDAERVFELIV 281
GG+ DG + R+ + G+E E+ C +VD+ G+ + A + + +
Sbjct: 429 SRGGLTKDGYELFDTMRE------RFGVEPRTEHYAC-VVDLLGRAGMEERAYEIIQRMP 481
Query: 282 DKKNIASWNAML 293
+ +I+ W A+L
Sbjct: 482 MRPSISVWGALL 493
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 60/259 (23%), Positives = 108/259 (41%), Gaps = 10/259 (3%)
Query: 79 SWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN--MELG 136
S+ I G A ++ FA M++ FP+ KA C +G
Sbjct: 78 SFTAFISGAAQHARPLAALSAFAAMLRVGLRPNDFTFPS-----AFKAAACAPPRCSTVG 132
Query: 137 KQVHGLLFKLGS-SRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCR 195
Q+H L + G + ++ + ++ Y K CL A +F ++ N + W A + N
Sbjct: 133 PQIHALALRFGYLPGDPFVSCAAMDMYFKTGCLGLARRLFEEMPNRNVIAWNAVMTNAVI 192
Query: 196 EGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEY 255
+G + F + + N + + AC G + G Q H +V G + D
Sbjct: 193 DGRPLETFKAYFGLREAGGMPNVVSVCAFFNACAGAMFL-SLGEQFHGFVVTCGFDMDVS 251
Query: 256 VQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKAS 315
V +VD YGKCR A VF+ + +N SW +M+V Y ++G +A + +
Sbjct: 252 VSNAMVDFYGKCRCAGKARAVFDGM-RVRNSVSWCSMIVAYAQHGAEEDALAVYMGARNT 310
Query: 316 GIQIQESLINDLRIACSSI 334
G + + +++ + C+ +
Sbjct: 311 GEEPTDFMVSSVLTTCAGL 329
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 87/201 (43%), Gaps = 4/201 (1%)
Query: 119 IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNIS-LTGSLINFYGKFRCLEDADFVFSQ 177
++ +A + + + LG+ H +L S + L+N Y K A +
Sbjct: 11 LLGAAFEAAISSRSPRLGRAAHARALRLLSPGLPPFICAHLVNLYSKLDLPAAAASALAS 70
Query: 178 LKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDD-GN 236
V +TA I + + F M R ++ N +TF S KA
Sbjct: 71 DPNPTVVSFTAFISGAAQHARPLAALSAFAAMLRVGLRPNDFTFPSAFKAAACAPPRCST 130
Query: 237 CGRQMHANIVKIG-LESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
G Q+HA ++ G L D +V C +DMY K L A R+FE + + +N+ +WNA++
Sbjct: 131 VGPQIHALALRFGYLPGDPFVSCAAMDMYFKTGCLGLARRLFEEMPN-RNVIAWNAVMTN 189
Query: 296 YIRNGLYVEATKFLYLMKASG 316
+ +G +E K + ++ +G
Sbjct: 190 AVIDGRPLETFKAYFGLREAG 210
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Query: 33 LNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVAD 92
L+ + R I + + L+ M+ CG ++ A Q+F +MP R+ +W MI GY + D
Sbjct: 338 LHAVAVRSCIDANIFVASALVDMYGKCGGVEDAEQVFLDMPERNLVTWNAMIGGYAHIGD 397
Query: 93 YQECITLFAEMMKR---KKGHMLLV 114
Q + +F M++ H+ LV
Sbjct: 398 AQNALAVFDAMIRSGGTSPNHITLV 422
>gi|302817788|ref|XP_002990569.1| hypothetical protein SELMODRAFT_131810 [Selaginella moellendorffii]
gi|300141737|gb|EFJ08446.1| hypothetical protein SELMODRAFT_131810 [Selaginella moellendorffii]
Length = 564
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 85/280 (30%), Positives = 136/280 (48%), Gaps = 13/280 (4%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+ CG ++ AR +F+ + SW +M+ Y + + + LF +M+ V
Sbjct: 1 MYGKCGSVEEARAVFNSIKRSSCFSWNLMLGAYCNNGSGDQALELFKQMVDVHGIRADRV 60
Query: 115 FPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFV 174
V AC ++E GKQ H + G ++ L +L+N YG+ E+A +
Sbjct: 61 ----TFVTAATACSLVGSLEEGKQFHSRFVESGLESSLILDSALMNMYGRCGSAEEARKI 116
Query: 175 FSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDD 234
F ++ N V W I + GHF + + +M +K + TF +VL AC
Sbjct: 117 FDRIPVKNVVCWNVMIAAYAQNGHFSEALELYYDM---NLKPDRVTFLNVLHAC-----T 168
Query: 235 GNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLV 294
GR +H ++V GLE D++V LV+M+GKC L DA+RVF+ I +++ SWNA++
Sbjct: 169 LESGRLIHQDVVSAGLERDKFVGNALVNMFGKCGSLSDAKRVFDRIA-FRDVISWNALMS 227
Query: 295 GYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
YI+ G EA + M +G+Q L ACSS+
Sbjct: 228 VYIQQGHRKEAFELFKRMDKAGLQPNSVTYLSLLPACSSL 267
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/294 (26%), Positives = 141/294 (47%), Gaps = 18/294 (6%)
Query: 41 NIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLF 100
++ +L+ + L+ M+ CG + AR++FD +P+++ W VMI Y + E + L+
Sbjct: 89 GLESSLILDSALMNMYGRCGSAEEARKIFDRIPVKNVVCWNVMIAAYAQNGHFSEALELY 148
Query: 101 AEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLIN 160
+M + L VL AC +E G+ +H + G R+ + +L+N
Sbjct: 149 YDMNLKPDRVTFLN--------VLHAC----TLESGRLIHQDVVSAGLERDKFVGNALVN 196
Query: 161 FYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYT 220
+GK L DA VF ++ + + W A + ++GH + F FK M + ++ NS T
Sbjct: 197 MFGKCGSLSDAKRVFDRIAFRDVISWNALMSVYIQQGHRKEAFELFKRMDKAGLQPNSVT 256
Query: 221 FSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELI 280
+ S+L AC ++ R++H + GLE DE V L+ Y K L D+ VFE +
Sbjct: 257 YLSLLPACSSLEQL----REIHQELADQGLEQDEQVGNTLITAYNKFS-LEDSVAVFERM 311
Query: 281 VDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
++++ SW M++G + +G A M G++ + AC+S+
Sbjct: 312 -KRRSVVSWTCMIMGMVEHGYGGRALDLYREMVVEGVRPDAVALVCALDACTSV 364
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 108/238 (45%), Gaps = 15/238 (6%)
Query: 61 QLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWI 119
L+ + +F+ M R SW MI+G V+ + L+ EM+ V P A
Sbjct: 300 SLEDSVAVFERMKRRSVVSWTCMIMGMVEHGYGGRALDLYREMVVEG------VRPDAVA 353
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
+VC L AC N+ G+++H L+ ++ + +++N YGK +A+ VF +K
Sbjct: 354 LVCALDACTSVENLAEGRKIHRLVEGTTMVTDVFVATAVVNMYGKCGKFAEAEAVFQGMK 413
Query: 180 RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG--GVDDDGNC 237
W + I + GH ++ M + + T L AC G+ D
Sbjct: 414 TTTVATWNSLIGAYAQHGHATDALKLYERMELSGTRPDGVTLLCALFACSHLGLLDR--- 470
Query: 238 GRQMHANIVK-IGLES-DEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
R+ ++ +V+ +E+ + C LVD++ + + +AE + + + +I++W A+L
Sbjct: 471 AREFYSGMVEDYQVEAVPAHFGC-LVDLFCRAGWIDEAEELIASMPVRPHISAWTALL 527
>gi|302774729|ref|XP_002970781.1| hypothetical protein SELMODRAFT_11658 [Selaginella moellendorffii]
gi|300161492|gb|EFJ28107.1| hypothetical protein SELMODRAFT_11658 [Selaginella moellendorffii]
Length = 517
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 91/306 (29%), Positives = 143/306 (46%), Gaps = 18/306 (5%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
Y L+++C+ Q+ L I + + TLL N L+ M+ CG LD AR +FD+
Sbjct: 1 YAPLLRQCSKQRSLHSGRRLHAQILRHRLDRHTLL-CNLLVQMYGRCGCLDEARSIFDKT 59
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN 132
P R+ SW++MI Y + ++ EM++R + + V L AC +
Sbjct: 60 PERNLFSWSIMIAAYAQNGHPTFALAVYREMLQRS----IHAIDSTTYVSALSACSALGD 115
Query: 133 MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192
+E GK +H + + L +LI+ Y K CLE+A F + R + VVW A I
Sbjct: 116 LETGKSIHERILSSKLEIDAFLGTALISMYSKCGCLEEAHECFDCVLRKDIVVWNAMIAA 175
Query: 193 NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLES 252
+ GH + N F + R ++ N+ T S L AC + GR++HA I ES
Sbjct: 176 FAQNGHPQRALNFFHAIPRGELQPNNLTLVSALDACSDLAALEE-GRKIHALI-----ES 229
Query: 253 DEYVQCG------LVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEAT 306
+ G LV++YGKC DA VF+ + + + SW +M+ Y +NG +A
Sbjct: 230 SPELTLGGSMGNALVNLYGKCGRAIDARAVFDAL-RPRTVVSWTSMIAAYAQNGHSDQAL 288
Query: 307 KFLYLM 312
+ M
Sbjct: 289 ELFQRM 294
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 89/332 (26%), Positives = 140/332 (42%), Gaps = 23/332 (6%)
Query: 8 ITTDMYTCLIKECTFQKDSAGAFELLNHIRKRV---NIKPTLLFLNRLLLMHVSCGQLDT 64
I + Y + C+ + G E I +R+ ++ L+ M+ CG L+
Sbjct: 98 IDSTTYVSALSACS----ALGDLETGKSIHERILSSKLEIDAFLGTALISMYSKCGCLEE 153
Query: 65 ARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVL 124
A + FD + +D W MI + Q + F + + + L +V L
Sbjct: 154 AHECFDCVLRKDIVVWNAMIAAFAQNGHPQRALNFFHAIPRGE-----LQPNNLTLVSAL 208
Query: 125 KACVCTMNMELGKQVHGLLFKLGSSRNISLTGS----LINFYGKFRCLEDADFVFSQLKR 180
AC +E G+++H L+ SS ++L GS L+N YGK DA VF L+
Sbjct: 209 DACSDLAALEEGRKIHALI---ESSPELTLGGSMGNALVNLYGKCGRAIDARAVFDALRP 265
Query: 181 HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQ 240
V WT+ I + GH Q F+ M + N T SVL+AC + G+
Sbjct: 266 RTVVSWTSMIAAYAQNGHSDQALELFQRMD---MAPNGVTLLSVLQACSEHRKGSHAGKT 322
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
+HA+I G + + LV+MYGK L A VF + ++ I +W AM+ Y ++G
Sbjct: 323 IHAHIRLAGFDGSPLLDSALVNMYGKVGNLDSAMVVFTQMRERDAI-TWTAMISSYAQHG 381
Query: 301 LYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+A M GI + + ACS
Sbjct: 382 HSRQALSLFSSMLLDGIATDAVTLACVSSACS 413
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 102/215 (47%), Gaps = 3/215 (1%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
+L+ C ++ G+++H + + R+ L L+ YG+ CL++A +F + N
Sbjct: 4 LLRQCSKQRSLHSGRRLHAQILRHRLDRHTLLCNLLVQMYGRCGCLDEARSIFDKTPERN 63
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKK-NSYTFSSVLKACGGVDDDGNCGRQM 241
W+ I + GH ++EM + I +S T+ S L AC + D G+ +
Sbjct: 64 LFSWSIMIAAYAQNGHPTFALAVYREMLQRSIHAIDSTTYVSALSACSALGDL-ETGKSI 122
Query: 242 HANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGL 301
H I+ LE D ++ L+ MY KC L +A F+ ++ +K+I WNAM+ + +NG
Sbjct: 123 HERILSSKLEIDAFLGTALISMYSKCGCLEEAHECFDCVL-RKDIVVWNAMIAAFAQNGH 181
Query: 302 YVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
A F + + +Q + ACS ++A
Sbjct: 182 PQRALNFFHAIPRGELQPNNLTLVSALDACSDLAA 216
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 108/259 (41%), Gaps = 37/259 (14%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ ++ CG+ AR +FD + R SW MI Y + + LF M G
Sbjct: 241 NALVNLYGKCGRAIDARAVFDALRPRTVVSWTSMIAAYAQNGHSDQALELFQRMDMAPNG 300
Query: 110 HMLLVFPAWIIVCVLKACV-CTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
LL VL+AC GK +H + G + L +L+N YGK L
Sbjct: 301 VTLL--------SVLQACSEHRKGSHAGKTIHAHIRLAGFDGSPLLDSALVNMYGKVGNL 352
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+ A VF+Q++ + + WTA I + + GH Q + F M + I ++ T + V AC
Sbjct: 353 DSAMVVFTQMRERDAITWTAMISSYAQHGHSRQALSLFSSMLLDGIATDAVTLACVSSAC 412
Query: 229 GGVDDDGNCGRQMHANIVKIGLES--------------DEYVQCGLVDMYGKCRLLRDAE 274
H+ VK+G + + YV + DM + L++AE
Sbjct: 413 S------------HSGDVKLGWDYFVSSVRDFGERPTFEHYVV--MSDMLSRAGRLQEAE 458
Query: 275 RVFELIVDKKNIASWNAML 293
+ + + ++ SW +L
Sbjct: 459 DLLRSMPFQPDLVSWRTLL 477
Score = 42.4 bits (98), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 59/122 (48%), Gaps = 7/122 (5%)
Query: 16 LIKECTFQKDSAGAFELLN-HIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL 74
+++ C+ + + A + ++ HIR + L + L+ M+ G LD+A +F +M
Sbjct: 306 VLQACSEHRKGSHAGKTIHAHIRL-AGFDGSPLLDSALVNMYGKVGNLDSAMVVFTQMRE 364
Query: 75 RDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNME 134
RD +W MI Y ++ ++LF+ M+ + A + CV AC + +++
Sbjct: 365 RDAITWTAMISSYAQHGHSRQALSLFSSMLLDG-----IATDAVTLACVSSACSHSGDVK 419
Query: 135 LG 136
LG
Sbjct: 420 LG 421
>gi|255553863|ref|XP_002517972.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223542954|gb|EEF44490.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 483
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 85/272 (31%), Positives = 137/272 (50%), Gaps = 9/272 (3%)
Query: 61 QLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWII 120
+LD AR+LFDE+ D W +I Y Y + + F +M+RK G L +
Sbjct: 203 ELDDARRLFDELLEPDAICWTSVISAYTRNDMYDKALGFFY-LMQRKLG---LAPDGFTF 258
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
VL AC ++ GK+VH L G S N+ + SL++ YGK ++++ VF ++
Sbjct: 259 GTVLTACGNLRRLKQGKEVHAKLITSGFSGNVVVESSLVDMYGKCGLVDESQRVFDRMSV 318
Query: 181 HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQ 240
N+V W+A + C+ G F V F+EMG + Y+F +VL+AC G+ G++
Sbjct: 319 KNSVSWSALLGGFCQNGDFESVIRIFREMGE---ADDLYSFGTVLRACAGLAAVRQ-GKE 374
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
+H V+ G D ++ LVD+Y KC + A R+F + +N+ +WN+M+ G+ +NG
Sbjct: 375 VHCQYVRRGGWRDVIIESALVDLYAKCGCIDFAHRIFTKMT-VRNLITWNSMICGFAQNG 433
Query: 301 LYVEATKFLYLMKASGIQIQESLINDLRIACS 332
EA + M G + + ACS
Sbjct: 434 WAEEALRIFDEMVKEGTKPDYITFIGVLFACS 465
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 89/293 (30%), Positives = 150/293 (51%), Gaps = 14/293 (4%)
Query: 12 MYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMH--VSCGQLDTARQLF 69
+Y L++ CT ++ H+ K ++ N LL ++ +S +T R++F
Sbjct: 53 IYASLLQTCTKVVSFNHGLQIHAHVVKS-GLETDRFVGNSLLALYFKLSTDFFET-RRVF 110
Query: 70 DEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCVLKACV 128
D + RD SW MI GYV ++ + LF EM+ + V P A+ + V+KAC
Sbjct: 111 DGLYFRDVISWTSMITGYVKGEKPKKALDLFWEMLD------VGVDPNAFTLSAVIKACT 164
Query: 129 CTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTA 188
+ LGK H ++ G N + +LI+ YG+ L+DA +F +L + + WT+
Sbjct: 165 DLGTLMLGKCFHCVIMIRGFHSNHVIGSALIDLYGRNYELDDARRLFDELLEPDAICWTS 224
Query: 189 KIVNNCREGHFHQVFNDFKEMGRE-RIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVK 247
I R + + F M R+ + + +TF +VL ACG + G+++HA ++
Sbjct: 225 VISAYTRNDMYDKALGFFYLMQRKLGLAPDGFTFGTVLTACGNLRRLKQ-GKEVHAKLIT 283
Query: 248 IGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
G + V+ LVDMYGKC L+ +++RVF+ + KN SW+A+L G+ +NG
Sbjct: 284 SGFSGNVVVESSLVDMYGKCGLVDESQRVFDRM-SVKNSVSWSALLGGFCQNG 335
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 91/183 (49%), Gaps = 8/183 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+ L+ M+ CG +D ++++FD M +++ SW+ ++ G+ D++ I +F EM +
Sbjct: 294 SSLVDMYGKCGLVDESQRVFDRMSVKNSVSWSALLGGFCQNGDFESVIRIFREMGEADD- 352
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
L F VL+AC + GK+VH + G R++ + +L++ Y K C++
Sbjct: 353 --LYSFGT-----VLRACAGLAAVRQGKEVHCQYVRRGGWRDVIIESALVDLYAKCGCID 405
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A +F+++ N + W + I + G + F EM +E K + TF VL AC
Sbjct: 406 FAHRIFTKMTVRNLITWNSMICGFAQNGWAEEALRIFDEMVKEGTKPDYITFIGVLFACS 465
Query: 230 GVD 232
D
Sbjct: 466 HTD 468
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 71/149 (47%), Gaps = 3/149 (2%)
Query: 189 KIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKI 248
KI+ C+ G + + I + ++S+L+ C V N G Q+HA++VK
Sbjct: 22 KIIGFCKSGALLHALDILNSIDSREISNKPFIYASLLQTCTKVVS-FNHGLQIHAHVVKS 80
Query: 249 GLESDEYVQCGLVDMYGKCRL-LRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATK 307
GLE+D +V L+ +Y K + RVF+ + +++ SW +M+ GY++ +A
Sbjct: 81 GLETDRFVGNSLLALYFKLSTDFFETRRVFDGLY-FRDVISWTSMITGYVKGEKPKKALD 139
Query: 308 FLYLMKASGIQIQESLINDLRIACSSISA 336
+ M G+ ++ + AC+ +
Sbjct: 140 LFWEMLDVGVDPNAFTLSAVIKACTDLGT 168
>gi|302141697|emb|CBI18900.3| unnamed protein product [Vitis vinifera]
Length = 637
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 89/287 (31%), Positives = 140/287 (48%), Gaps = 14/287 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+RL+ M+ G + A++LFDEMP +D SW ++ G C+ F M + + G
Sbjct: 101 DRLVSMYFKLGYDEDAQRLFDEMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRM-RTESG 159
Query: 110 HMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
P + ++ V+ AC ++ GK +HG++ KLG S + SLIN YGK L
Sbjct: 160 RQ----PNEVTLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFL 215
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+ A +F ++ + V W + +V + G+ + + F M R I + T ++L+AC
Sbjct: 216 DAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRAC 275
Query: 229 GGVDDDGNCGRQ---MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
D GRQ +HA I + G +D + L+++Y K L +E +FE I D+
Sbjct: 276 ----TDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDR 331
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
IA W AML GY + EA K LM G+++ L ACS
Sbjct: 332 IA-WTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACS 377
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 121/248 (48%), Gaps = 11/248 (4%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
+N L+ M+ G LD A QLF+EMP+R SW M+V + ++ + LF +MKR
Sbjct: 202 VNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLF-NLMKRAG 260
Query: 109 GHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
+ P +V +L+AC T + +H + + G + +I + +L+N Y K
Sbjct: 261 -----INPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGR 315
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
L ++ +F ++K + + WTA + + F M +E ++ + TF+ +L A
Sbjct: 316 LNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSA 375
Query: 228 C--GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
C G+ ++G ++ + + ++ D Y C +VD+ G+ L DA + + + + +
Sbjct: 376 CSHSGLVEEGKKYFEIMSEVYRVEPRLDHY-SC-MVDLLGRSGRLEDAYELIKSMPMEPS 433
Query: 286 IASWNAML 293
W A+L
Sbjct: 434 SGVWGALL 441
Score = 41.2 bits (95), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 84/192 (43%), Gaps = 11/192 (5%)
Query: 8 ITTDMYT--CLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTA 65
I D T L++ CT A + +I R ++ LL ++ G+L+ +
Sbjct: 261 INPDQATMVALLRACTDTGLGRQAESIHAYIH-RCGFNADIIIATALLNLYAKLGRLNAS 319
Query: 66 RQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLK 125
+F+E+ RD +W M+ GY A +E I LF M+K + F +L
Sbjct: 320 EDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTH-----LLS 374
Query: 126 ACVCTMNMELGKQVHGLLFKLGS-SRNISLTGSLINFYGKFRCLEDA-DFVFSQLKRHNT 183
AC + +E GK+ ++ ++ + +++ G+ LEDA + + S ++
Sbjct: 375 ACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSS 434
Query: 184 VVWTAKIVNNCR 195
VW A ++ CR
Sbjct: 435 GVWGA-LLGACR 445
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 4/98 (4%)
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
+HA ++K SD ++ LV MY K DA+R+F+ + + K++ SWN+++ G G
Sbjct: 84 IHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPN-KDLVSWNSLMSGLSGRG 142
Query: 301 LYVEA--TKFLYLMKASGIQIQESLINDLRIACSSISA 336
Y+ A F + SG Q E + + AC+ + A
Sbjct: 143 -YLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGA 179
>gi|77552605|gb|ABA95402.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
Length = 1000
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 86/298 (28%), Positives = 140/298 (46%), Gaps = 6/298 (2%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R ++ ++ +N L+ M+ + G+L A LF M RD SW MI YV + + +
Sbjct: 274 RSSLDSSVTVINALVNMYSAAGKLSDAEFLFWNMSRRDLISWNTMISSYVQNCNSTDALK 333
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
++ + L F + L AC + GK VH ++ +L RN+ + SL
Sbjct: 334 TLGQLFHTNESPNHLTFSS-----ALGACSSPGALIDGKMVHAIVLQLSLQRNLLVGNSL 388
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
I YGK +EDA+ VF + H+ V + I + F M IK N
Sbjct: 389 ITMYGKCNSMEDAEKVFQSMPTHDIVSYNVLIGGYAVLEDGTKAMQVFSWMRSAGIKPNY 448
Query: 219 YTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE 278
T ++ + +D N GR +HA I++ G SDEYV L+ MY KC L + +F
Sbjct: 449 ITMINIHGSFASSNDLHNYGRPLHAYIIRTGFLSDEYVANSLITMYAKCGNLESSTNIFN 508
Query: 279 LIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
I + KNI SWNA++ ++ G EA K M+ +G ++ + + +C+S+++
Sbjct: 509 SITN-KNIVSWNAIIAANVQLGHGEEALKLFIDMQHAGNKLDRVCLAECLSSCASLAS 565
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 83/314 (26%), Positives = 146/314 (46%), Gaps = 17/314 (5%)
Query: 26 SAGAF---ELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAV 82
S GA ++++ I +++++ LL N L+ M+ C ++ A ++F MP D S+ V
Sbjct: 359 SPGALIDGKMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPTHDIVSYNV 418
Query: 83 MIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN--MELGKQVH 140
+I GY + D + + +F+ M R G + P +I + + + N G+ +H
Sbjct: 419 LIGGYAVLEDGTKAMQVFSWM--RSAG----IKPNYITMINIHGSFASSNDLHNYGRPLH 472
Query: 141 GLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFH 200
+ + G + + SLI Y K LE + +F+ + N V W A I N + GH
Sbjct: 473 AYIIRTGFLSDEYVANSLITMYAKCGNLESSTNIFNSITNKNIVSWNAIIAANVQLGHGE 532
Query: 201 QVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGL 260
+ F +M K + + L +C + G Q+H +K GL+SD YV
Sbjct: 533 EALKLFIDMQHAGNKLDRVCLAECLSSCASLASLEE-GMQLHGLGMKSGLDSDSYVVNAA 591
Query: 261 VDMYGKCRLLRDAERVFELIVDK--KNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
+DMYGKC + + + +++ D+ + WN ++ GY + G + EA + M A+G +
Sbjct: 592 MDMYGKCGKM---DEMLQVVPDQAIRPQQCWNTLISGYAKYGYFKEAEETFKQMVATGRK 648
Query: 319 IQESLINDLRIACS 332
L ACS
Sbjct: 649 PDYVTFVALLSACS 662
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/272 (26%), Positives = 127/272 (46%), Gaps = 13/272 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M + G++ A +LFD M D SW MI Y +C +F++M
Sbjct: 184 NSLITMFGNLGRVHDAEKLFDRMEEHDTISWNAMISMYSHQGICSKCFLVFSDMR----- 238
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
H L A + ++ C + + G +H L + ++++ +L+N Y L
Sbjct: 239 HHGLRPDATTLCSLMSVCASSDHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLS 298
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC- 228
DA+F+F + R + + W I + + + ++ N TFSS L AC
Sbjct: 299 DAEFLFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNESPNHLTFSSALGACS 358
Query: 229 --GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
G + D G+ +HA ++++ L+ + V L+ MYGKC + DAE+VF+ + +I
Sbjct: 359 SPGALID----GKMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSM-PTHDI 413
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
S+N ++ GY +A + M+++GI+
Sbjct: 414 VSYNVLIGGYAVLEDGTKAMQVFSWMRSAGIK 445
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 78/309 (25%), Positives = 138/309 (44%), Gaps = 15/309 (4%)
Query: 6 LPITTDMYTCLIKECTFQKDSAG-----AFELLNHIRKRVNIKPTLLFLNRLLLMHVSCG 60
+P++ L+ C + G A L H R + + LL ++ S G
Sbjct: 37 VPLSGFALASLVTACERRGRDEGIACGAAIHALTH---RAGLMGNVYIGTALLHLYGSRG 93
Query: 61 QLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWII 120
+ A++LF EMP R+ SW ++V +E + + +M R+ G + A
Sbjct: 94 IVSDAQRLFWEMPERNVVSWTALMVALSSNGYLEEALRAYRQM--RRDG---VPCNANAF 148
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
V+ C N G QV + G +S+ SLI +G + DA+ +F +++
Sbjct: 149 ATVVSLCGSLENEVPGLQVASQVIVSGLQNQVSVANSLITMFGNLGRVHDAEKLFDRMEE 208
Query: 181 HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQ 240
H+T+ W A I +G + F F +M ++ ++ T S++ C D + G
Sbjct: 209 HDTISWNAMISMYSHQGICSKCFLVFSDMRHHGLRPDATTLCSLMSVCASSDHFSH-GSG 267
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
+H+ ++ L+S V LV+MY L DAE +F + ++++ SWN M+ Y++N
Sbjct: 268 IHSLCLRSSLDSSVTVINALVNMYSAAGKLSDAEFLF-WNMSRRDLISWNTMISSYVQNC 326
Query: 301 LYVEATKFL 309
+A K L
Sbjct: 327 NSTDALKTL 335
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 100/198 (50%), Gaps = 2/198 (1%)
Query: 136 GKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCR 195
G +H L + G N+ + +L++ YG + DA +F ++ N V WTA +V
Sbjct: 63 GAAIHALTHRAGLMGNVYIGTALLHLYGSRGIVSDAQRLFWEMPERNVVSWTALMVALSS 122
Query: 196 EGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEY 255
G+ + +++M R+ + N+ F++V+ CG ++++ G Q+ + ++ GL++
Sbjct: 123 NGYLEEALRAYRQMRRDGVPCNANAFATVVSLCGSLENE-VPGLQVASQVIVSGLQNQVS 181
Query: 256 VQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKAS 315
V L+ M+G + DAE++F+ + + I SWNAM+ Y G+ + M+
Sbjct: 182 VANSLITMFGNLGRVHDAEKLFDRMEEHDTI-SWNAMISMYSHQGICSKCFLVFSDMRHH 240
Query: 316 GIQIQESLINDLRIACSS 333
G++ + + L C+S
Sbjct: 241 GLRPDATTLCSLMSVCAS 258
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/259 (23%), Positives = 110/259 (42%), Gaps = 35/259 (13%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ CG L+++ +F+ + ++ SW +I V + +E + LF +M + G
Sbjct: 488 NSLITMYAKCGNLESSTNIFNSITNKNIVSWNAIIAANVQLGHGEEALKLFIDM--QHAG 545
Query: 110 HMLLVFPAWIIVCV---LKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166
+ L VC+ L +C ++E G Q+HGL K G + + + ++ YGK
Sbjct: 546 NKL------DRVCLAECLSSCASLASLEEGMQLHGLGMKSGLDSDSYVVNAAMDMYGKCG 599
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
+++ V W I + G+F + FK+M K + TF ++L
Sbjct: 600 KMDEMLQVVPDQAIRPQQCWNTLISGYAKYGYFKEAEETFKQMVATGRKPDYVTFVALLS 659
Query: 227 ACGGVDDDGNCGRQMHANIVKIGLE------SDEYVQCGL------VDMYGKCRLLRDAE 274
AC HA +V G++ S V G+ VD+ G+ +AE
Sbjct: 660 ACS------------HAGLVDKGIDYYNSMASSFGVSPGIKHCVCIVDLLGRLGRFAEAE 707
Query: 275 RVFELIVDKKNIASWNAML 293
+ E + N W ++L
Sbjct: 708 KFIEEMPVLPNDLIWRSLL 726
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 68/152 (44%), Gaps = 3/152 (1%)
Query: 185 VWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG--GVDDDGNCGRQMH 242
W + R G F + M + + + +S++ AC G D+ CG +H
Sbjct: 8 TWYTAVSGCVRCGRDGTAFEMLRGMRERGVPLSGFALASLVTACERRGRDEGIACGAAIH 67
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
A + GL + Y+ L+ +YG ++ DA+R+F + ++N+ SW A++V NG
Sbjct: 68 ALTHRAGLMGNVYIGTALLHLYGSRGIVSDAQRLF-WEMPERNVVSWTALMVALSSNGYL 126
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIACSSI 334
EA + M+ G+ + + C S+
Sbjct: 127 EEALRAYRQMRRDGVPCNANAFATVVSLCGSL 158
>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 679
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 82/327 (25%), Positives = 164/327 (50%), Gaps = 14/327 (4%)
Query: 11 DMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFD 70
+++ ++K CT D E ++ R+ + L N L+ M+ +D+ R++F+
Sbjct: 106 NVFPSVLKSCTMMMDLRFG-ESVHGFIVRLGMDCDLYTGNALMNMYSKLLGIDSVRKVFE 164
Query: 71 EMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCT 130
MP +D S+ +I GY Y++ + + EM G L A+ + VL
Sbjct: 165 LMPRKDVVSYNTVIAGYAQSGMYEDALRMVREM-----GTSDLKPDAFTLSSVLPIFSEY 219
Query: 131 MNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKI 190
+++ GK++HG + + G ++ + SL++ Y K +ED++ VFS L R +++ W + +
Sbjct: 220 VDVLKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSHLYRRDSISWNSLV 279
Query: 191 VNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGL 250
+ G +++ F++M +++ + FSSV+ AC + + G+Q+H +++ G
Sbjct: 280 AGYVQNGRYNEALRLFRQMVSAKVRPGAVAFSSVIPACAHLATL-HLGKQLHGYVLRGGF 338
Query: 251 ESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI---ASWNAMLVGYIRNGLYVEATK 307
+ ++ LVDMY KC ++ A ++F D+ N+ SW A+++G+ +G EA
Sbjct: 339 GRNIFIASALVDMYSKCGNIQAARKIF----DRMNLHDEVSWTAIIMGHALHGHGHEAVS 394
Query: 308 FLYLMKASGIQIQESLINDLRIACSSI 334
MK G++ + + ACS +
Sbjct: 395 LFEEMKRQGVKPNQVAFVAVLTACSHV 421
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 130/257 (50%), Gaps = 7/257 (2%)
Query: 79 SWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQ 138
+W +I + D + + + F EM + VFP+ VLK+C M++ G+
Sbjct: 72 AWKSVIRCFTDQSLFSRALASFVEMRASGRCPDHNVFPS-----VLKSCTMMMDLRFGES 126
Query: 139 VHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGH 198
VHG + +LG ++ +L+N Y K ++ VF + R + V + I + G
Sbjct: 127 VHGFIVRLGMDCDLYTGNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAGYAQSGM 186
Query: 199 FHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQC 258
+ +EMG +K +++T SSVL D G+++H +++ G++SD Y+
Sbjct: 187 YEDALRMVREMGTSDLKPDAFTLSSVLPIFSEYVDVLK-GKEIHGYVIRKGIDSDVYIGS 245
Query: 259 GLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
LVDMY K + D+ERVF + + +I SWN+++ GY++NG Y EA + M ++ ++
Sbjct: 246 SLVDMYAKSARIEDSERVFSHLYRRDSI-SWNSLVAGYVQNGRYNEALRLFRQMVSAKVR 304
Query: 319 IQESLINDLRIACSSIS 335
+ + AC+ ++
Sbjct: 305 PGAVAFSSVIPACAHLA 321
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 82/314 (26%), Positives = 142/314 (45%), Gaps = 39/314 (12%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R I + + L+ M+ +++ + ++F + RD SW ++ GYV Y E +
Sbjct: 234 RKGIDSDVYIGSSLVDMYAKSARIEDSERVFSHLYRRDSISWNSLVAGYVQNGRYNEALR 293
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
LF +M+ K + F + V+ AC + LGKQ+HG + + G RNI + +L
Sbjct: 294 LFRQMVSAKVRPGAVAFSS-----VIPACAHLATLHLGKQLHGYVLRGGFGRNIFIASAL 348
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
++ Y K ++ A +F ++ H+ V WTA I+ + GH H+ + F+EM R+ +K N
Sbjct: 349 VDMYSKCGNIQAARKIFDRMNLHDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQ 408
Query: 219 YTFSSVLKAC---GGVDDD---------------------------GNCGR--QMHANIV 246
F +VL AC G VD+ G G+ + + I
Sbjct: 409 VAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYDFIS 468
Query: 247 KIGLESDEYVQCGLVDMYGKCRLLRDAERVFELI--VDKKNIASWNAMLVGYIRNGLYVE 304
K+ +E V L+ + L AE+V E I +D +N+ ++ M Y NG + E
Sbjct: 469 KMRVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTIDSENMGAYVLMCNMYASNGRWKE 528
Query: 305 ATKFLYLMKASGIQ 318
K ++ G++
Sbjct: 529 MAKLRLRVRKKGLR 542
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 90/183 (49%), Gaps = 3/183 (1%)
Query: 136 GKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCR 195
KQ+H + S + S + +I+ Y + L +A VF L+ + W + I
Sbjct: 24 AKQLHAQFIRTQSLSHTSAS-IVISIYTNLKLLHEALLVFKTLESPPVLAWKSVIRCFTD 82
Query: 196 EGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEY 255
+ F + F EM + F SVLK+C + D G +H IV++G++ D Y
Sbjct: 83 QSLFSRALASFVEMRASGRCPDHNVFPSVLKSCTMMMDL-RFGESVHGFIVRLGMDCDLY 141
Query: 256 VQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKAS 315
L++MY K + +VFEL+ +K++ S+N ++ GY ++G+Y +A + + M S
Sbjct: 142 TGNALMNMYSKLLGIDSVRKVFELM-PRKDVVSYNTVIAGYAQSGMYEDALRMVREMGTS 200
Query: 316 GIQ 318
++
Sbjct: 201 DLK 203
>gi|356567218|ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g12770-like [Glycine max]
Length = 727
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 88/284 (30%), Positives = 136/284 (47%), Gaps = 9/284 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ ++ CG + A+ +FD + R SW +I GY E + +F++M R G
Sbjct: 193 NGLVALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGYAQNGKAVEALRMFSQM--RNNG 250
Query: 110 HMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
V P WI +V +L+A ++E G+ +HG + K+G +L SL FY K +
Sbjct: 251 ----VKPDWIALVSILRAYTDVDDLEQGRSIHGFVIKMGLEDEPALLISLTAFYAKCGLV 306
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
A F Q+K N ++W A I + GH + N F M IK +S T S + A
Sbjct: 307 TVAKSFFDQMKTTNVIMWNAMISGYAKNGHAEEAVNLFHYMISRNIKPDSVTVRSAVLAS 366
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
V + M + K SD +V L+DMY KC + A RVF+ D K++
Sbjct: 367 AQVGSL-ELAQWMDDYVSKSNYGSDIFVNTSLIDMYAKCGSVEFARRVFDRNSD-KDVVM 424
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
W+AM++GY +G EA ++MK +G+ + L AC+
Sbjct: 425 WSAMIMGYGLHGQGWEAINLYHVMKQAGVFPNDVTFIGLLTACN 468
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 83/331 (25%), Positives = 140/331 (42%), Gaps = 17/331 (5%)
Query: 9 TTDMYTCLIKECTFQKDSAGAFELLNHIRKRV---NIKPTLLFLNRLLLMHVSCGQLDTA 65
+ Y LI T ++ L+ I R+ ++ + +L+ + GQ+ A
Sbjct: 55 SDSFYASLIDNSTHKRH-------LDQIHNRLVISGLQHNGFLMTKLVNGSSNLGQICYA 107
Query: 66 RQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLK 125
R+LFDE D W +I Y Y++ + ++ M FP VLK
Sbjct: 108 RKLFDEFCYPDVFMWNAIIRSYSRNNMYRDTVEMYRWMRWTGVHPDGFTFPY-----VLK 162
Query: 126 ACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVV 185
AC ++ L +HG + K G ++ + L+ Y K + A VF L V
Sbjct: 163 ACTELLDFGLSCIIHGQIIKYGFGSDVFVQNGLVALYAKCGHIGVAKVVFDGLYHRTIVS 222
Query: 186 WTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANI 245
WT+ I + G + F +M +K + S+L+A VDD GR +H +
Sbjct: 223 WTSIISGYAQNGKAVEALRMFSQMRNNGVKPDWIALVSILRAYTDVDDLEQ-GRSIHGFV 281
Query: 246 VKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEA 305
+K+GLE + + L Y KC L+ A+ F+ + N+ WNAM+ GY +NG EA
Sbjct: 282 IKMGLEDEPALLISLTAFYAKCGLVTVAKSFFDQM-KTTNVIMWNAMISGYAKNGHAEEA 340
Query: 306 TKFLYLMKASGIQIQESLINDLRIACSSISA 336
+ M + I+ + +A + + +
Sbjct: 341 VNLFHYMISRNIKPDSVTVRSAVLASAQVGS 371
>gi|302788580|ref|XP_002976059.1| hypothetical protein SELMODRAFT_104710 [Selaginella moellendorffii]
gi|300156335|gb|EFJ22964.1| hypothetical protein SELMODRAFT_104710 [Selaginella moellendorffii]
Length = 699
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 87/291 (29%), Positives = 144/291 (49%), Gaps = 11/291 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ CG L AR++FD M RD SW +I Y +E + LF M + +
Sbjct: 49 NALVNMYGKCGSLALAREVFDGMDHRDVISWNAVITAYAQAGHCKEAMELFQAMQEDGR- 107
Query: 110 HMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLG-SSRNISLTGSLINFYGKFRC 167
+ P + V V+ AC +E ++ L+ + G ++ L +L+N Y K
Sbjct: 108 ----IEPDSVTFVAVVSACCDPSALEAANRIFALVEERGLLDSDVVLGNALVNMYSKCGS 163
Query: 168 LEDADFVFSQLK-RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRER-IKKNSYTFSSVL 225
L+ A VF ++K R + V+WT I ++G+ F++M +E + + +T +S L
Sbjct: 164 LKSATMVFERMKIRDDVVLWTTMISVYAQDGYSEAALELFQQMEKEEALLPDGFTLASAL 223
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
AC G + GR++HA +++ G ES+ V LV MY C L+DA F+ + ++N
Sbjct: 224 AACTGPEMLEE-GREIHALVIERGCESELVVGNALVSMYANCGTLQDALECFQKMA-QRN 281
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+ SWNAM+ Y+ + EA + Y M+ G+Q CS+ +A
Sbjct: 282 VVSWNAMIAAYVHHNCDKEAFRIFYQMQLEGVQPNSVTFVTFLSTCSTPAA 332
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 75/302 (24%), Positives = 137/302 (45%), Gaps = 13/302 (4%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
+ ++ C A + + +R + ++ N L+ M+ CG L +A +F+ M
Sbjct: 115 FVAVVSACCDPSALEAANRIFALVEERGLLDSDVVLGNALVNMYSKCGSLKSATMVFERM 174
Query: 73 PLRD-FNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTM 131
+RD W MI Y + + LF +M K + L+ + + L AC
Sbjct: 175 KIRDDVVLWTTMISVYAQDGYSEAALELFQQMEKEEA----LLPDGFTLASALAACTGPE 230
Query: 132 NMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIV 191
+E G+++H L+ + G + + +L++ Y L+DA F ++ + N V W A I
Sbjct: 231 MLEEGREIHALVIERGCESELVVGNALVSMYANCGTLQDALECFQKMAQRNVVSWNAMIA 290
Query: 192 NNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG--GVDDDGNCGRQMHANIVKIG 249
+ F F +M E ++ NS TF + L C +DG + A V+
Sbjct: 291 AYVHHNCDKEAFRIFYQMQLEGVQPNSVTFVTFLSTCSTPAAFEDG----LIRALEVEKR 346
Query: 250 LES-DEYVQCGLVDMYGKCRLLRDAERVFELIVDKK-NIASWNAMLVGYIRNGLYVEATK 307
+ES D V L+ Y K L + +RVF+ + ++ ++ +WNA++ G +RNG + A +
Sbjct: 347 VESLDALVGNALLHTYAKLGKLDEVQRVFQRMEKQRDDVVTWNAVIEGSVRNGEFRNALE 406
Query: 308 FL 309
+
Sbjct: 407 LM 408
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 108/250 (43%), Gaps = 17/250 (6%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N LL ++ G+L R+LF+EM RD +W +++ YV+ +E + LF M+
Sbjct: 417 NGLLGAYIHVGRLADTRKLFEEMEERDVITWNMILGAYVERDMAKEAVRLFRRMIAEGTE 476
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ + +L AC ++ G++VH L+ + G+ + + +L++ +GK L
Sbjct: 477 PNSITW-----TTMLGACAGEASLAEGRRVHELIAERGADSELFVGNALVDMFGKCASLG 531
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A F +++ + W + + G + F M RE IK TF V AC
Sbjct: 532 GARQAFERIRAKDASSWNVLVAALAQNGDAEEALKQFLRMQREGIKPTDVTFIVVFWAC- 590
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQ------CGLVDMYGKCRLLRDAERVFELIVDK 283
+ GR A + L D + G+ D+ G+ L +AE V + I
Sbjct: 591 -----SHAGRLEQAKTIFASLRHDYGIAPLPSHYSGMTDLLGRAGFLDEAEEVIKRIPFS 645
Query: 284 KNIASWNAML 293
++ W +L
Sbjct: 646 RDELPWMTLL 655
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 110/219 (50%), Gaps = 10/219 (4%)
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
+ LK+CV ++ GK +H L+ + G IS+ +L+N YGK L A VF +
Sbjct: 14 ITALKSCVRIQSLAAGKFIHLLVIESGLLTQISVGNALVNMYGKCGSLALAREVFDGMDH 73
Query: 181 HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRE-RIKKNSYTFSSVLKACGGVDDDG-NCG 238
+ + W A I + GH + F+ M + RI+ +S TF +V+ AC D
Sbjct: 74 RDVISWNAVITAYAQAGHCKEAMELFQAMQEDGRIEPDSVTFVAVVSAC--CDPSALEAA 131
Query: 239 RQMHANIVKIG-LESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYI 297
++ A + + G L+SD + LV+MY KC L+ A VFE + + ++ W M+ Y
Sbjct: 132 NRIFALVEERGLLDSDVVLGNALVNMYSKCGSLKSATMVFERMKIRDDVVLWTTMISVYA 191
Query: 298 RNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
++G Y EA L+ ++ +E+L+ D S+++A
Sbjct: 192 QDG-YSEAALELF----QQMEKEEALLPDGFTLASALAA 225
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 85/345 (24%), Positives = 136/345 (39%), Gaps = 62/345 (17%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L+ N L+ M+ +CG L A + F +M R+ SW MI YV +E +F +M
Sbjct: 251 LVVGNALVSMYANCGTLQDALECFQKMAQRNVVSWNAMIAAYVHHNCDKEAFRIFYQMQL 310
Query: 106 RKKGHMLLVFPAWIIVCVLKACV---CTMNMELGKQVHGL-----------LFKLGS--- 148
+ F ++ C A +E+ K+V L KLG
Sbjct: 311 EGVQPNSVTFVTFLSTCSTPAAFEDGLIRALEVEKRVESLDALVGNALLHTYAKLGKLDE 370
Query: 149 ----------------SRNISLTGSLINFYGKFRC------------------------- 167
+ N + GS+ N G+FR
Sbjct: 371 VQRVFQRMEKQRDDVVTWNAVIEGSVRN--GEFRNALELMPQKNLGSWNGLLGAYIHVGR 428
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
L D +F +++ + + W + + F+ M E + NS T++++L A
Sbjct: 429 LADTRKLFEEMEERDVITWNMILGAYVERDMAKEAVRLFRRMIAEGTEPNSITWTTMLGA 488
Query: 228 CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
C G GR++H I + G +S+ +V LVDM+GKC L A + FE I K+ +
Sbjct: 489 CAGEASLAE-GRRVHELIAERGADSELFVGNALVDMFGKCASLGGARQAFERI-RAKDAS 546
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
SWN ++ +NG EA K M+ GI+ + + ACS
Sbjct: 547 SWNVLVAALAQNGDAEEALKQFLRMQREGIKPTDVTFIVVFWACS 591
>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
Length = 670
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 90/287 (31%), Positives = 143/287 (49%), Gaps = 17/287 (5%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ + S G +++AR +FDE+P++D SW MI GYV+ +Y+E + LF EMMK
Sbjct: 135 LVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTN---- 190
Query: 112 LLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
V P +V V+ A + ++ELG+QVH + G N+ + +LI+FY K +E
Sbjct: 191 --VRPDESTMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSKCGEMET 248
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC-- 228
A +F L + + W I + + F+EM R N T S+L AC
Sbjct: 249 ACGLFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSILHACAH 308
Query: 229 -GGVDDDGNCGRQMHANIVK--IGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
G +D GR +H I K G+ + ++ L+DMY KC + A +VF ++ K+
Sbjct: 309 LGAID----IGRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFNSML-HKS 363
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+ +WNAM+ G+ +G A M+ + I+ + L ACS
Sbjct: 364 LPAWNAMIFGFAMHGRANAAFDIFSRMRKNEIKPDDITFVGLLSACS 410
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 121/253 (47%), Gaps = 13/253 (5%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L +N L+ + CG+++TA LF + +D SW ++I GY + Y+E + LF EM++
Sbjct: 230 LKIVNALIDFYSKCGEMETACGLFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLR 289
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKL--GSSRNISLTGSLINFYG 163
+ + ++ +L AC +++G+ +H + K G + SL SLI+ Y
Sbjct: 290 SGESPNDVT-----MLSILHACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYS 344
Query: 164 KFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSS 223
K +E A VF+ + + W A I G + F+ F M + IK + TF
Sbjct: 345 KCGDIEAAHQVFNSMLHKSLPAWNAMIFGFAMHGRANAAFDIFSRMRKNEIKPDDITFVG 404
Query: 224 VLKAC---GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELI 280
+L AC G +D + R M N KI + + Y C ++D+ G L ++AE + +
Sbjct: 405 LLSACSHAGMLDLGRHIFRSMTHN-YKITPKLEHY-GC-MIDLLGHSGLFKEAEEMISTM 461
Query: 281 VDKKNIASWNAML 293
+ + W ++L
Sbjct: 462 TMEPDGVIWCSLL 474
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 75/312 (24%), Positives = 128/312 (41%), Gaps = 44/312 (14%)
Query: 62 LDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIV 121
L A +F+ + + W M G+ D + L+ M+ + L+ ++
Sbjct: 13 LPYAISVFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMIS-----LGLLPNSYTFP 67
Query: 122 CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFS----- 176
+LK+C + G Q+HG + KLG ++ + SLI+ Y + LEDA VF
Sbjct: 68 FLLKSCAKLKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHR 127
Query: 177 --------------------------QLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMG 210
++ + V W A I G++ + FKEM
Sbjct: 128 DVVSYTALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMM 187
Query: 211 RERIKKNSYTFSSVLKAC---GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKC 267
+ ++ + T +V+ A G ++ GRQ+H+ I G S+ + L+D Y KC
Sbjct: 188 KTNVRPDESTMVTVISASARSGSIE----LGRQVHSWIADHGFGSNLKIVNALIDFYSKC 243
Query: 268 RLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDL 327
+ A +F L + K++ SWN ++ GY LY EA M SG + + +
Sbjct: 244 GEMETACGLF-LGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSI 302
Query: 328 RIACSSISASKI 339
AC+ + A I
Sbjct: 303 LHACAHLGAIDI 314
>gi|297836116|ref|XP_002885940.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331780|gb|EFH62199.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 944
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 89/283 (31%), Positives = 140/283 (49%), Gaps = 7/283 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N++L + ++ R LF+EMP DF S+ V+I Y Y+E + LF EM + G
Sbjct: 283 NQILHFYSKHDRVLETRNLFNEMPELDFVSYNVVISSYSQAEQYEESLNLFREM--QCMG 340
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
FP +L ++++G+QVH + + + SL++ Y K +
Sbjct: 341 FDRRNFP---FATMLSIAANLSSLQVGRQVHCQAIVATADSILHVGNSLVDMYAKCEMFD 397
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
+A+ +F L + +TV WTA I ++G F +M ++ + TF++VLKA
Sbjct: 398 EAELIFKSLSQRSTVSWTALISGYVQKGLHGAGLKLFTKMRGANLRADQSTFATVLKASA 457
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
G G+Q+HA I++ G + + GLVDMY KC ++DA +VFE + D +N SW
Sbjct: 458 GFASL-LLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPD-RNAVSW 515
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
NA++ Y NG A M SG+Q I + IACS
Sbjct: 516 NALISAYADNGDGEAAIGAFTKMIQSGLQPDSVSILGVLIACS 558
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 83/282 (29%), Positives = 142/282 (50%), Gaps = 12/282 (4%)
Query: 45 TLLFL---NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFA 101
T LFL N LL + +LD A LF+E+ +D ++ +I GY Y E I LF
Sbjct: 174 TNLFLTVCNVLLKSYCEVRRLDLACVLFEEILDKDSVTFNTLITGYEKDGLYTEAIHLFL 233
Query: 102 EMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINF 161
+M R+ GH F VLKA V + LG+Q+HGL G SR+ S+ +++F
Sbjct: 234 KM--RQSGHKPSDF---TFSGVLKAVVGLHDFALGQQLHGLSVTTGFSRDASVGNQILHF 288
Query: 162 YGKF-RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYT 220
Y K R LE + +F+++ + V + I + + + + N F+EM + ++
Sbjct: 289 YSKHDRVLETRN-LFNEMPELDFVSYNVVISSYSQAEQYEESLNLFREMQCMGFDRRNFP 347
Query: 221 FSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELI 280
F+++L + GRQ+H + +S +V LVDMY KC + +AE +F+ +
Sbjct: 348 FATMLSIAANLSSL-QVGRQVHCQAIVATADSILHVGNSLVDMYAKCEMFDEAELIFKSL 406
Query: 281 VDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQES 322
+++ SW A++ GY++ GL+ K M+ + ++ +S
Sbjct: 407 -SQRSTVSWTALISGYVQKGLHGAGLKLFTKMRGANLRADQS 447
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 68/270 (25%), Positives = 119/270 (44%), Gaps = 11/270 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N ++ +V G L +AR LFD MP R +W +++ Y + E LF +M +
Sbjct: 79 NTMISGYVKMGDLSSARHLFDAMPDRTVVTWTILMGWYAGNNHFDEAFKLFRQMCRS--- 135
Query: 110 HMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLT--GSLINFYGKFR 166
P ++ +L C + QVH KLG N+ LT L+ Y + R
Sbjct: 136 ---CTLPDYVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNLFLTVCNVLLKSYCEVR 192
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
L+ A +F ++ ++V + I ++G + + + F +M + K + +TFS VLK
Sbjct: 193 RLDLACVLFEEILDKDSVTFNTLITGYEKDGLYTEAIHLFLKMRQSGHKPSDFTFSGVLK 252
Query: 227 ACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
A G+ D G+Q+H V G D V ++ Y K + + +F + + +
Sbjct: 253 AVVGLHDFA-LGQQLHGLSVTTGFSRDASVGNQILHFYSKHDRVLETRNLFNEMPE-LDF 310
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASG 316
S+N ++ Y + Y E+ M+ G
Sbjct: 311 VSYNVVISSYSQAEQYEESLNLFREMQCMG 340
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 109/246 (44%), Gaps = 9/246 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ C D A +F + R SW +I GYV + + LF +M +G
Sbjct: 384 NSLVDMYAKCEMFDEAELIFKSLSQRSTVSWTALISGYVQKGLHGAGLKLFTKM----RG 439
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
L + VLKA ++ LGKQ+H + + G+ N+ L++ Y K ++
Sbjct: 440 ANLRADQS-TFATVLKASAGFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIK 498
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
DA VF ++ N V W A I G F +M + ++ +S + VL AC
Sbjct: 499 DAVQVFEEMPDRNAVSWNALISAYADNGDGEAAIGAFTKMIQSGLQPDSVSILGVLIACS 558
Query: 230 --GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
G + G Q + I I + Y C ++D+ G+ +AE++ + + + +
Sbjct: 559 HCGFVEQGTEFFQAMSPIYGITPKKKHYA-C-MLDLLGRNGRFAEAEKLMDEMPFEPDEI 616
Query: 288 SWNAML 293
W+++L
Sbjct: 617 MWSSVL 622
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 84/169 (49%), Gaps = 4/169 (2%)
Query: 150 RNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEM 209
+N T ++I+ Y K L A +F + V WT + HF + F F++M
Sbjct: 73 KNTVSTNTMISGYVKMGDLSSARHLFDAMPDRTVVTWTILMGWYAGNNHFDEAFKLFRQM 132
Query: 210 GRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQ-CG-LVDMYGKC 267
R + TF+++L C G Q+HA VK+G +++ ++ C L+ Y +
Sbjct: 133 CRSCTLPDYVTFTTLLPGCNDAVPQNAVG-QVHAFAVKLGFDTNLFLTVCNVLLKSYCEV 191
Query: 268 RLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASG 316
R L A +FE I+DK ++ ++N ++ GY ++GLY EA M+ SG
Sbjct: 192 RRLDLACVLFEEILDKDSV-TFNTLITGYEKDGLYTEAIHLFLKMRQSG 239
>gi|302764012|ref|XP_002965427.1| hypothetical protein SELMODRAFT_84339 [Selaginella moellendorffii]
gi|300166241|gb|EFJ32847.1| hypothetical protein SELMODRAFT_84339 [Selaginella moellendorffii]
Length = 495
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 88/305 (28%), Positives = 147/305 (48%), Gaps = 13/305 (4%)
Query: 31 ELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDV 90
E+++ + R + L+ L+ M+ C +L ARQ+FD + +D +W+ MI Y +
Sbjct: 96 EMIHRLAARKKLDVGLIVGTALVGMYGKCSRLIEARQVFDGIVEKDVVTWSTMISAYAQL 155
Query: 91 ADYQECITLFAEMMKRKKGHMLLVFPAWIIV-CVLKACVCTMNMELGKQVHGLLFKLGSS 149
+E I LF M ++ V P II+ +L AC + GK H L+ G
Sbjct: 156 GHVREAIQLFGYM------NLDGVRPNEIILMSILGACSSAGALAEGKMTHELVVICGFG 209
Query: 150 RNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEM 209
++S +LI YGK L A VF ++R + + W+A + GH F F+ M
Sbjct: 210 ADVSTGNTLIKMYGKCGDLASAKAVFGGMERRDLISWSAMLAVIAEHGHCKDAFVHFRRM 269
Query: 210 GRERIKKNSYTFSSVLKACG--GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKC 267
E +K + TF S+L AC G +GN +H I G +S Y++ L+DMYGKC
Sbjct: 270 DLEGVKPDYVTFVSLLDACSLLGALVEGNV---IHTRIRAEGFQSVMYIENSLIDMYGKC 326
Query: 268 RLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDL 327
L+ A +F+ + +N+ +W M+ +++ EA + M+ +G+Q + +
Sbjct: 327 GSLQAARGIFDRM-SHRNVITWTTMITACVQHEQGKEALELFEEMEKAGVQPDQVAFLSI 385
Query: 328 RIACS 332
+CS
Sbjct: 386 IHSCS 390
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 78/288 (27%), Positives = 128/288 (44%), Gaps = 9/288 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N LL M+ CG ++ AR+ F+ M R+ SW+ M+ Y D+ + + LF +M +
Sbjct: 14 NSLLNMYGKCGGVEEAREFFESMTHRNVISWSTMVAAYAQRGDHDQALVLFQKMEEEG-- 71
Query: 110 HMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
V P + + VL AC +E G+ +H L + + + +L+ YGK L
Sbjct: 72 ----VEPNEVTFLSVLDACANAEAVEQGEMIHRLAARKKLDVGLIVGTALVGMYGKCSRL 127
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+A VF + + V W+ I + GH + F M + ++ N S+L AC
Sbjct: 128 IEARQVFDGIVEKDVVTWSTMISAYAQLGHVREAIQLFGYMNLDGVRPNEIILMSILGAC 187
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
G+ H +V G +D L+ MYGKC L A+ VF + +++++ S
Sbjct: 188 SSAGALAE-GKMTHELVVICGFGADVSTGNTLIKMYGKCGDLASAKAVFGGM-ERRDLIS 245
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
W+AML +G +A M G++ L ACS + A
Sbjct: 246 WSAMLAVIAEHGHCKDAFVHFRRMDLEGVKPDYVTFVSLLDACSLLGA 293
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 59/257 (22%), Positives = 111/257 (43%), Gaps = 31/257 (12%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ CG L +A+ +F M RD SW+ M+ +A++ C F ++
Sbjct: 216 NTLIKMYGKCGDLASAKAVFGGMERRDLISWSAMLA---VIAEHGHCKDAFVHF---RRM 269
Query: 110 HMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+ V P ++ V +L AC + G +H + G + + SLI+ YGK L
Sbjct: 270 DLEGVKPDYVTFVSLLDACSLLGALVEGNVIHTRIRAEGFQSVMYIENSLIDMYGKCGSL 329
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+ A +F ++ N + WT I + + F+EM + ++ + F S++ +C
Sbjct: 330 QAARGIFDRMSHRNVITWTTMITACVQHEQGKEALELFEEMEKAGVQPDQVAFLSIIHSC 389
Query: 229 GGVDDDGNCGRQMHANIVKIG-------LESDEYVQ-----CGLVDMYGKCRLLRDAERV 276
H+ +V+ G +E + G++D+ G+ L +AE +
Sbjct: 390 S------------HSGLVEEGRIYFLKMVEDQSFTPGVEHFVGMLDLLGRSGKLNEAEEL 437
Query: 277 FELIVDKKNIASWNAML 293
E + + + WN +L
Sbjct: 438 MEFMPVEPGVVGWNTLL 454
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 249 GLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKF 308
GL E+V L++MYGKC + +A FE + +N+ SW+ M+ Y + G + +A
Sbjct: 5 GLCCGEFVGNSLLNMYGKCGGVEEAREFFESMT-HRNVISWSTMVAAYAQRGDHDQALVL 63
Query: 309 LYLMKASGIQIQESLINDLRIACSSISA 336
M+ G++ E + AC++ A
Sbjct: 64 FQKMEEEGVEPNEVTFLSVLDACANAEA 91
>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Brachypodium distachyon]
Length = 900
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 91/304 (29%), Positives = 147/304 (48%), Gaps = 13/304 (4%)
Query: 29 AFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYV 88
AF + ++VN+ +L + + CG +D+AR++FD M R+ SW MI GY
Sbjct: 351 AFAVRGGFDEQVNVSTAILDV------YCKCGAVDSARKVFDGMQDRNSVSWNAMIKGYA 404
Query: 89 DVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGS 148
+ D E + LF KR G + V ++ L AC ++ G++VH LL ++G
Sbjct: 405 ENGDATEALALF----KRMVGEGVDVTDVSVLA-ALHACGELGFLDEGRRVHELLVRIGL 459
Query: 149 SRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKE 208
N+++ +LI Y K + + A VF +L V W A I+ + G F
Sbjct: 460 ESNVNVMNALITMYCKCKRTDLAAQVFDELGYKTRVSWNAMILGCTQNGSSEDAVRLFSR 519
Query: 209 MGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCR 268
M E +K +S+T S++ A + D R +H +++ L+ D YV L+DMY KC
Sbjct: 520 MQLENVKPDSFTLVSIIPALADISDPLQ-ARWIHGYSIRLHLDQDVYVLTALIDMYAKCG 578
Query: 269 LLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLR 328
+ A +F D +++ +WNAM+ GY +G A + MK+SG E+ +
Sbjct: 579 RVSIARSLFNSARD-RHVITWNAMIHGYGSHGSGKVAVELFEEMKSSGKVPNETTFLSVL 637
Query: 329 IACS 332
ACS
Sbjct: 638 SACS 641
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 86/325 (26%), Positives = 148/325 (45%), Gaps = 11/325 (3%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
+T L+K C + D A + + R + P L L M+ C + AR++FD M
Sbjct: 228 FTSLLKLCAARADLATGRAVHAQLAAR-GLSPEALAATALANMYAKCRRPGDARRVFDRM 286
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN 132
P RD +W ++ GY + + + M + V +V VL AC
Sbjct: 287 PARDRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERPDAV----TLVSVLPACADAQA 342
Query: 133 MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192
+ ++VH + G ++++ ++++ Y K ++ A VF ++ N+V W A I
Sbjct: 343 LGACREVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQDRNSVSWNAMIKG 402
Query: 193 NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG--GVDDDGNCGRQMHANIVKIGL 250
G + FK M E + + + L ACG G D+ GR++H +V+IGL
Sbjct: 403 YAENGDATEALALFKRMVGEGVDVTDVSVLAALHACGELGFLDE---GRRVHELLVRIGL 459
Query: 251 ESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLY 310
ES+ V L+ MY KC+ A +VF+ + K + SWNAM++G +NG +A +
Sbjct: 460 ESNVNVMNALITMYCKCKRTDLAAQVFDELGYKTRV-SWNAMILGCTQNGSSEDAVRLFS 518
Query: 311 LMKASGIQIQESLINDLRIACSSIS 335
M+ ++ + + A + IS
Sbjct: 519 RMQLENVKPDSFTLVSIIPALADIS 543
>gi|357520433|ref|XP_003630505.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355524527|gb|AET04981.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 998
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 92/319 (28%), Positives = 150/319 (47%), Gaps = 13/319 (4%)
Query: 20 CTFQKDSAGAFELLNHIRK------RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMP 73
CT +S G+ L R+ +VNI N L+ M+ C L AR++F+ M
Sbjct: 346 CTSVLNSCGSLVALEKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKCDSLTDARKVFNLMA 405
Query: 74 LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNM 133
D S+ MI GY E + LF EM LL+F V +L ++
Sbjct: 406 AIDLVSYNAMIEGYSRQDKLCEALDLFREMRLSLSSPTLLIF-----VSLLGVSASLYHL 460
Query: 134 ELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNN 193
EL Q+HGL+ K G S + +LI+ Y K + DA VF +++ + VVWTA
Sbjct: 461 ELSNQIHGLIIKYGVSLDEFAGSALIDVYSKCSRVGDARLVFEEIQDKDIVVWTAMFSGY 520
Query: 194 CREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESD 253
++ + +K + R+K N +TF++V+ A + + G+Q H ++K+G + D
Sbjct: 521 TQQSENEESLKLYKCLQMSRLKPNEFTFAAVITAASNIASLRH-GQQFHNQVIKMGFDDD 579
Query: 254 EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMK 313
+V LVDMY K + +A + F + + K+ A WN+M+ Y ++G +A + M
Sbjct: 580 PFVANTLVDMYAKSGSIEEAHKAF-ISTNWKDTACWNSMIATYAQHGEAEKALQVFEDMI 638
Query: 314 ASGIQIQESLINDLRIACS 332
G++ + ACS
Sbjct: 639 MEGLKPNYVTFVGVLSACS 657
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 83/256 (32%), Positives = 137/256 (53%), Gaps = 11/256 (4%)
Query: 62 LDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWII 120
+D AR LFD + ++ +W +I GY Q + LF +M K+GH V P +++
Sbjct: 192 IDDARLLFDGLQVKTSFTWTTIIAGYSKQGRSQVSLKLFDQM---KEGH---VCPDKYVL 245
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
VL AC+ +E GKQ+H + + G ++S+ I+FY K ++ +F ++
Sbjct: 246 SSVLSACLMLKFLEGGKQIHCYVLRSGIVMDVSMVNGFIDFYFKCHKVQLGRKLFDRMVD 305
Query: 181 HNTVVWTAKIVNNCREGHFHQ-VFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGR 239
N V WT ++ C + FH+ + F EM R +++ +SVL +CG + GR
Sbjct: 306 KNVVSWTT-VIAGCMQNSFHRDALDLFVEMARMGWNPDAFGCTSVLNSCGSLVALEK-GR 363
Query: 240 QMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRN 299
Q+HA +K+ +++D++V+ GL+DMY KC L DA +VF L+ ++ S+NAM+ GY R
Sbjct: 364 QVHAYAIKVNIDNDDFVKNGLIDMYAKCDSLTDARKVFNLMA-AIDLVSYNAMIEGYSRQ 422
Query: 300 GLYVEATKFLYLMKAS 315
EA M+ S
Sbjct: 423 DKLCEALDLFREMRLS 438
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/277 (26%), Positives = 136/277 (49%), Gaps = 12/277 (4%)
Query: 43 KPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAE 102
K + +N LL + ++ A +LFD M ++ +W+ M+ Y + E + LF +
Sbjct: 71 KHDIFLVNTLLHAYSKLNLVNHANKLFDTMSHKNLVTWSSMVSMYTHHSHCLEALMLFVQ 130
Query: 103 MMK--RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLIN 160
M+ +K + +I+ V++AC + Q+HGL+ K G +++ + SLI+
Sbjct: 131 FMRSCNEKPN------EYILASVVRACTQFGGLNPALQIHGLVVKGGYVQDVYVCTSLID 184
Query: 161 FYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYT 220
FY K C++DA +F L+ + WT I ++G F +M + + Y
Sbjct: 185 FYTKHACIDDARLLFDGLQVKTSFTWTTIIAGYSKQGRSQVSLKLFDQMKEGHVCPDKYV 244
Query: 221 FSSVLKACGGVDD-DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFEL 279
SSVL AC + +G G+Q+H +++ G+ D + G +D Y KC ++ ++F+
Sbjct: 245 LSSVLSACLMLKFLEG--GKQIHCYVLRSGIVMDVSMVNGFIDFYFKCHKVQLGRKLFDR 302
Query: 280 IVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASG 316
+VD KN+ SW ++ G ++N + +A M G
Sbjct: 303 MVD-KNVVSWTTVIAGCMQNSFHRDALDLFVEMARMG 338
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 78/288 (27%), Positives = 131/288 (45%), Gaps = 7/288 (2%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
+N + + C ++ R+LFD M ++ SW +I G + + +++ + LF EM +
Sbjct: 280 VNGFIDFYFKCHKVQLGRKLFDRMVDKNVVSWTTVIAGCMQNSFHRDALDLFVEMAR--- 336
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
M A+ VL +C + +E G+QVH K+ + + LI+ Y K L
Sbjct: 337 --MGWNPDAFGCTSVLNSCGSLVALEKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKCDSL 394
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
DA VF+ + + V + A I R+ + + F+EM F S+L
Sbjct: 395 TDARKVFNLMAAIDLVSYNAMIEGYSRQDKLCEALDLFREMRLSLSSPTLLIFVSLLGVS 454
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
+ Q+H I+K G+ DE+ L+D+Y KC + DA VFE I D K+I
Sbjct: 455 ASL-YHLELSNQIHGLIIKYGVSLDEFAGSALIDVYSKCSRVGDARLVFEEIQD-KDIVV 512
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
W AM GY + E+ K ++ S ++ E + A S+I++
Sbjct: 513 WTAMFSGYTQQSENEESLKLYKCLQMSRLKPNEFTFAAVITAASNIAS 560
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 90/200 (45%), Gaps = 10/200 (5%)
Query: 137 KQVHGLLFKLG-SSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCR 195
K++H + G +I L +L++ Y K + A+ +F + N V W++ +
Sbjct: 58 KKIHSKIVVFGFHKHDIFLVNTLLHAYSKLNLVNHANKLFDTMSHKNLVTWSSMVSMYTH 117
Query: 196 EGHFHQVFNDFKEMGRE-RIKKNSYTFSSVLKAC---GGVDDDGNCGRQMHANIVKIGLE 251
H + F + R K N Y +SV++AC GG+ N Q+H +VK G
Sbjct: 118 HSHCLEALMLFVQFMRSCNEKPNEYILASVVRACTQFGGL----NPALQIHGLVVKGGYV 173
Query: 252 SDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYL 311
D YV L+D Y K + DA +F+ + K + +W ++ GY + G + K
Sbjct: 174 QDVYVCTSLIDFYTKHACIDDARLLFDGLQVKTSF-TWTTIIAGYSKQGRSQVSLKLFDQ 232
Query: 312 MKASGIQIQESLINDLRIAC 331
MK + + +++ + AC
Sbjct: 233 MKEGHVCPDKYVLSSVLSAC 252
>gi|356502788|ref|XP_003520198.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g63370-like [Glycine max]
Length = 923
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 91/292 (31%), Positives = 145/292 (49%), Gaps = 14/292 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+L+LM+ CG L A ++FDEM R SW ++ +V Y E I L+ +M
Sbjct: 83 TKLVLMYGKCGSLRDAVKVFDEMSERTIFSWNALMGAFVSSGKYLEAIELYKDMRVLGVA 142
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
FP+ VLKAC LG ++HG+ K G + + +LI YGK L
Sbjct: 143 IDACTFPS-----VLKACGALGESRLGAEIHGVAVKCGYGEFVFVCNALIAMYGKCGDLG 197
Query: 170 DADFVFS--QLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
A +F +++ +TV W + I + EG+ + + F+ M + N+YTF + L+
Sbjct: 198 GARVLFDGIMMEKEDTVSWNSIISAHVAEGNCLEALSLFRRMQEVGVASNTYTFVAALQ- 256
Query: 228 CGGVDDDG--NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
GV+D G +H ++K +D YV L+ MY KC + DA RVFE ++ ++
Sbjct: 257 --GVEDPSFVKLGMGIHGAVLKSNHFADVYVANALIAMYAKCGRMEDAGRVFESML-CRD 313
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISAS 337
SWN +L G ++N LY +A + M+ SG + + + +L IA S S +
Sbjct: 314 YVSWNTLLSGLVQNELYSDALNYFRDMQNSGQKPDQVSVLNL-IAASGRSGN 364
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/291 (26%), Positives = 144/291 (49%), Gaps = 12/291 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ CG+++ A ++F+ M RD+ SW ++ G V Y + + F +M +
Sbjct: 287 NALIAMYAKCGRMEDAGRVFESMLCRDYVSWNTLLSGLVQNELYSDALNYFRDMQNSGQK 346
Query: 110 HMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
P + ++ ++ A + N+ GK+VH + G N+ + +L++ Y K C+
Sbjct: 347 ------PDQVSVLNLIAASGRSGNLLKGKEVHAYAIRNGLDSNMQIGNTLVDMYAKCCCV 400
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFH-QVFNDFKEMGRERIKKNSYTFSSVLKA 227
+ F + + + WT I+ + FH + N F+++ + + + SVL+A
Sbjct: 401 KYMGHAFECMHEKDLISWTT-IIAGYAQNEFHLEAINLFRKVQVKGMDVDPMMIGSVLRA 459
Query: 228 CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
C G+ N R++H + K L +D +Q +V++YG+ + A R FE I K+I
Sbjct: 460 CSGLKSR-NFIREIHGYVFKRDL-ADIMLQNAIVNVYGEVGHIDYARRAFESI-RSKDIV 516
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASK 338
SW +M+ + NGL VEA + Y +K + IQ I A +++S+ K
Sbjct: 517 SWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATANLSSLK 567
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 75/291 (25%), Positives = 135/291 (46%), Gaps = 13/291 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDE--MPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRK 107
N L+ M+ CG L AR LFD M D SW +I +V + E ++LF R+
Sbjct: 184 NALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVAEGNCLEALSLF-----RR 238
Query: 108 KGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
+ + + V L+ ++LG +HG + K ++ + +LI Y K
Sbjct: 239 MQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAVLKSNHFADVYVANALIAMYAKCGR 298
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
+EDA VF + + V W + + + N F++M K + + +++ A
Sbjct: 299 MEDAGRVFESMLCRDYVSWNTLLSGLVQNELYSDALNYFRDMQNSGQKPDQVSVLNLIAA 358
Query: 228 CGGVDDDGNC--GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
G GN G+++HA ++ GL+S+ + LVDMY KC ++ FE + +K+
Sbjct: 359 SG---RSGNLLKGKEVHAYAIRNGLDSNMQIGNTLVDMYAKCCCVKYMGHAFECM-HEKD 414
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+ SW ++ GY +N ++EA ++ G+ + +I + ACS + +
Sbjct: 415 LISWTTIIAGYAQNEFHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKS 465
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 96/196 (48%), Gaps = 4/196 (2%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
+L CV + G+Q+H LL K S + L L+ YGK L DA VF ++
Sbjct: 52 LLDLCVAAKALPQGQQLHALLLK--SHLSAFLATKLVLMYGKCGSLRDAVKVFDEMSERT 109
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
W A + G + + +K+M + ++ TF SVLKACG + + G ++H
Sbjct: 110 IFSWNALMGAFVSSGKYLEAIELYKDMRVLGVAIDACTFPSVLKACGALGES-RLGAEIH 168
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE-LIVDKKNIASWNAMLVGYIRNGL 301
VK G +V L+ MYGKC L A +F+ ++++K++ SWN+++ ++ G
Sbjct: 169 GVAVKCGYGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVAEGN 228
Query: 302 YVEATKFLYLMKASGI 317
+EA M+ G+
Sbjct: 229 CLEALSLFRRMQEVGV 244
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 70/306 (22%), Positives = 129/306 (42%), Gaps = 44/306 (14%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ C + F+ M +D SW +I GY + E I LF ++ + KG
Sbjct: 388 NTLVDMYAKCCCVKYMGHAFECMHEKDLISWTTIIAGYAQNEFHLEAINLFRKV--QVKG 445
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ V P +I VL+AC + +++HG +FK + +I L +++N YG+ ++
Sbjct: 446 --MDVDPM-MIGSVLRACSGLKSRNFIREIHGYVFKRDLA-DIMLQNAIVNVYGEVGHID 501
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A F ++ + V WT+ I G + F + + I+ +S S L A
Sbjct: 502 YARRAFESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATA 561
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ G+++H +++ G + + LVDMY C + ++ ++F V ++++ W
Sbjct: 562 NLSSLKK-GKEIHGFLIRKGFFLEGPIASSLVDMYACCGTVENSRKMFH-SVKQRDLILW 619
Query: 290 NAM-----------------------------------LVGYIRNGLYVEATKFLYLMKA 314
+M L +GL VE +F +MK
Sbjct: 620 TSMINANGMHGCGNKAIALFKKMTDQNVIPDHITFLALLYACSHSGLMVEGKRFFEIMK- 678
Query: 315 SGIQIQ 320
G Q++
Sbjct: 679 YGYQLE 684
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 117/254 (46%), Gaps = 17/254 (6%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
++ N ++ ++ G +D AR+ F+ + +D SW MI V E + LF + +
Sbjct: 484 IMLQNAIVNVYGEVGHIDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQ 543
Query: 106 RKKGHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
+ P I I+ L A +++ GK++HG L + G + SL++ Y
Sbjct: 544 TN------IQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYAC 597
Query: 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
+E++ +F +K+ + ++WT+ I N G ++ FK+M + + + TF ++
Sbjct: 598 CGTVENSRKMFHSVKQRDLILWTSMINANGMHGCGNKAIALFKKMTDQNVIPDHITFLAL 657
Query: 225 LKAC--GGVDDDGNCGRQMHANIVKIGLESD---EYVQCGLVDMYGKCRLLRDAERVFEL 279
L AC G+ +G + I+K G + + E+ C +VD+ + L +A
Sbjct: 658 LYACSHSGLMVEG----KRFFEIMKYGYQLEPWPEHYAC-MVDLLSRSNSLEEAYHFVRN 712
Query: 280 IVDKKNIASWNAML 293
+ K + W A+L
Sbjct: 713 MPIKPSSEIWCALL 726
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 60/102 (58%), Gaps = 3/102 (2%)
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYI 297
G+Q+HA ++K L + ++ LV MYGKC LRDA +VF+ + ++ I SWNA++ ++
Sbjct: 65 GQQLHALLLKSHLSA--FLATKLVLMYGKCGSLRDAVKVFDEM-SERTIFSWNALMGAFV 121
Query: 298 RNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKI 339
+G Y+EA + M+ G+ I + AC ++ S++
Sbjct: 122 SSGKYLEAIELYKDMRVLGVAIDACTFPSVLKACGALGESRL 163
>gi|255557445|ref|XP_002519753.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541170|gb|EEF42726.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 562
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 88/270 (32%), Positives = 138/270 (51%), Gaps = 15/270 (5%)
Query: 67 QLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKA 126
LF++MP R+ SW MI G +E + LF +MM + CVL A
Sbjct: 253 NLFEKMPCRNVISWTSMIGGLDQNGKSEEALILFGKMMDSGVKPTSTTY-----ACVLTA 307
Query: 127 CVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVW 186
C M+ +G QVHG + KLG + ++ SLI FY + +++A VF++ N V+W
Sbjct: 308 CANAMDFNMGVQVHGRVSKLGYKSDEFISASLITFYSNCKQVKNAHQVFNETLSKNVVIW 367
Query: 187 TAKIVNNCREGHFHQ----VFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
TA ++ C H+ VF+D +MG + N TF S +C G++ G+++H
Sbjct: 368 TA-LLTGCELNSKHEDALRVFSDMIKMG---VFPNQSTFISAFNSCRGLEALDR-GKEIH 422
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
K+GLE+D +V LV MY +C + DA VF+ I +K ++ SWN+++VG ++G
Sbjct: 423 TVTAKLGLETDVFVGNSLVVMYNECGNVNDAVAVFKKIKEKNDV-SWNSIIVGSSQHGHG 481
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIACS 332
+ A F M + + E + L ACS
Sbjct: 482 IWALIFFNQMIRTCVDPDEITLTGLLSACS 511
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 73/282 (25%), Positives = 124/282 (43%), Gaps = 17/282 (6%)
Query: 56 HVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVF 115
+ G+L+ A LFD M +RD SW MI G +D D LF EM +R
Sbjct: 149 YARSGRLNDALMLFDRMTVRDIISWNSMIKGCLDCGDLGMARRLFDEMPERN-------- 200
Query: 116 PAWIIVCVLKACVCTMNMELGK-QVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFV 174
V + ++ G+ ++ F R+++ ++I Y R + D +
Sbjct: 201 ------VVSWTTMVNGYLKFGRVEIAERFFWDMPVRDVAAWNAMIFGYCGNRRIADGLNL 254
Query: 175 FSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDD 234
F ++ N + WT+ I + G + F +M +K S T++ VL AC D
Sbjct: 255 FEKMPCRNVISWTSMIGGLDQNGKSEEALILFGKMMDSGVKPTSTTYACVLTACANAMD- 313
Query: 235 GNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLV 294
N G Q+H + K+G +SDE++ L+ Y C+ +++A +VF + KN+ W A+L
Sbjct: 314 FNMGVQVHGRVSKLGYKSDEFISASLITFYSNCKQVKNAHQVFNETL-SKNVVIWTALLT 372
Query: 295 GYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
G N + +A + M G+ +S +C + A
Sbjct: 373 GCELNSKHEDALRVFSDMIKMGVFPNQSTFISAFNSCRGLEA 414
>gi|302809659|ref|XP_002986522.1| hypothetical protein SELMODRAFT_124407 [Selaginella moellendorffii]
gi|300145705|gb|EFJ12379.1| hypothetical protein SELMODRAFT_124407 [Selaginella moellendorffii]
Length = 625
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 83/289 (28%), Positives = 140/289 (48%), Gaps = 11/289 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ + G L +AR++FD + +D SW M+V Y +E + LF +M
Sbjct: 46 NSLVSAYTRSGDLRSARKVFDSIENKDLISWNSMVVAYSQHGHGEEMLELFRKMD----- 100
Query: 110 HMLLVFPAWII-VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
V P I +L AC +ELGK+VH + + + +L +LIN Y K L
Sbjct: 101 ----VEPDSITYASILGACSAMELLELGKEVHARVSRSRFKSDPALAAALINMYSKCGVL 156
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
E A VF ++ + W A I + G + F+ M E ++ + ++ ++L AC
Sbjct: 157 ESARRVFDGIQSVDPSPWNAMISGLVQHGRAREALGLFERMKAESVRIDKVSYLTILSAC 216
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
++D G ++H + G++ D V+ + +MY KCR + A ++F+ + +K N+ S
Sbjct: 217 CALEDLHE-GIRIHEHASACGMDKDLVVETAVFNMYSKCRQVDLARKMFDGMNEKTNVVS 275
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISAS 337
WN+M+ Y ++G EA + LMK G+Q + AC+S S
Sbjct: 276 WNSMIAAYAQSGRGREALELYELMKEEGVQPDDITYAGALGACTSYGGS 324
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 80/301 (26%), Positives = 139/301 (46%), Gaps = 10/301 (3%)
Query: 37 RKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQEC 96
R R P L L+ M+ CG L++AR++FD + D + W MI G V +E
Sbjct: 133 RSRFKSDPALA--AALINMYSKCGVLESARRVFDGIQSVDPSPWNAMISGLVQHGRAREA 190
Query: 97 ITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTG 156
+ LF E MK + + V + +L AC ++ G ++H G +++ +
Sbjct: 191 LGLF-ERMKAESVRIDKVS----YLTILSACCALEDLHEGIRIHEHASACGMDKDLVVET 245
Query: 157 SLINFYGKFRCLEDADFVFSQL-KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIK 215
++ N Y K R ++ A +F + ++ N V W + I + G + ++ M E ++
Sbjct: 246 AVFNMYSKCRQVDLARKMFDGMNEKTNVVSWNSMIAAYAQSGRGREALELYELMKEEGVQ 305
Query: 216 KNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAER 275
+ T++ L AC G ++H+ I + + +D ++ +V+MY KC L A
Sbjct: 306 PDDITYAGALGACTSYGGSAK-GAEIHSRITESKIRTDVFLDTAIVNMYAKCGELETAMS 364
Query: 276 VFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
FE + +KN +W+AM+ +I+ G EA M + G Q E + ACS I
Sbjct: 365 YFEKM-RRKNAVTWSAMVGAFIQQGYDREALDLYLRMVSEGFQPSEITLAGALAACSRIG 423
Query: 336 A 336
A
Sbjct: 424 A 424
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 121/252 (48%), Gaps = 17/252 (6%)
Query: 55 MHVSCGQLDTARQLFDEMPLR-DFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLL 113
M+ C Q+D AR++FD M + + SW MI Y +E + L+ E+MK +
Sbjct: 250 MYSKCRQVDLARKMFDGMNEKTNVVSWNSMIAAYAQSGRGREALELY-ELMKEEG----- 303
Query: 114 VFPAWIIVC-VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDAD 172
V P I L AC G ++H + + ++ L +++N Y K LE A
Sbjct: 304 VQPDDITYAGALGACTSYGGSAKGAEIHSRITESKIRTDVFLDTAIVNMYAKCGELETAM 363
Query: 173 FVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC---G 229
F +++R N V W+A + ++G+ + + + M E + + T + L AC G
Sbjct: 364 SYFEKMRRKNAVTWSAMVGAFIQQGYDREALDLYLRMVSEGFQPSEITLAGALAACSRIG 423
Query: 230 GVDDDGNCGRQMHANIVKI-GLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
+ + G+ +H+ I L++ ++Q L++MY KC L A +F + +++ S
Sbjct: 424 ALQE----GKAIHSRIQATETLQNCLFLQNSLLNMYAKCGCLAIANTMFSNL-QRRDSFS 478
Query: 289 WNAMLVGYIRNG 300
WN ++VG+ +G
Sbjct: 479 WNTIIVGHAHHG 490
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 92/171 (53%), Gaps = 5/171 (2%)
Query: 151 NISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMG 210
N+ + SL++ Y + L A VF ++ + + W + +V + GH ++ F++M
Sbjct: 41 NVVVKNSLVSAYTRSGDLRSARKVFDSIENKDLISWNSMVVAYSQHGHGEEMLELFRKMD 100
Query: 211 RERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLL 270
++ +S T++S+L AC ++ G+++HA + + +SD + L++MY KC +L
Sbjct: 101 ---VEPDSITYASILGACSAMELL-ELGKEVHARVSRSRFKSDPALAAALINMYSKCGVL 156
Query: 271 RDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQE 321
A RVF+ I + + WNAM+ G +++G EA MKA ++I +
Sbjct: 157 ESARRVFDGI-QSVDPSPWNAMISGLVQHGRAREALGLFERMKAESVRIDK 206
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/285 (24%), Positives = 127/285 (44%), Gaps = 13/285 (4%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
Y + CT SA E+ + I + I+ + ++ M+ CG+L+TA F++M
Sbjct: 311 YAGALGACTSYGGSAKGAEIHSRITES-KIRTDVFLDTAIVNMYAKCGELETAMSYFEKM 369
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVC-VLKACVCTM 131
++ +W+ M+ ++ +E + L+ M+ P+ I + L AC
Sbjct: 370 RRKNAVTWSAMVGAFIQQGYDREALDLYLRMVSEG------FQPSEITLAGALAACSRIG 423
Query: 132 NMELGKQVHGLLFKLGSSRN-ISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKI 190
++ GK +H + + +N + L SL+N Y K CL A+ +FS L+R ++ W I
Sbjct: 424 ALQEGKAIHSRIQATETLQNCLFLQNSLLNMYAKCGCLAIANTMFSNLQRRDSFSWNTII 483
Query: 191 VNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--GGVDDDGNCGRQMHANIVKI 248
V + G +V + EM ++ + + TF+ VL AC G+ D G I
Sbjct: 484 VGHAHHGDVDEVLSLHGEMVQDGVDPDYVTFACVLLACSHAGLLDRGRSHFLSMTGDYCI 543
Query: 249 GLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
D Y +C LVD+ + R+AE + + +W +L
Sbjct: 544 KPMLDHY-EC-LVDVLSRAGWAREAEALAMAMPFTPRPVTWTTLL 586
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 212 ERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLR 271
E + N TFS V +C G ++ + A+I S+ V+ LV Y + LR
Sbjct: 4 EGFRPNGVTFSGVASSCSGREELDT----IQASIAASDFHSNVVVKNSLVSAYTRSGDLR 59
Query: 272 DAERVFELIVDKKNIASWNAMLVGYIRNG 300
A +VF+ I + K++ SWN+M+V Y ++G
Sbjct: 60 SARKVFDSI-ENKDLISWNSMVVAYSQHG 87
>gi|347954544|gb|AEP33772.1| organelle transcript processing 82, partial [Draba nemorosa]
Length = 526
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 88/283 (31%), Positives = 142/283 (50%), Gaps = 17/283 (6%)
Query: 56 HVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVF 115
+ S G ++ A++LFDE+P++D SW MI GY + +Y+E + LF +MMK V
Sbjct: 164 YASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTN------VR 217
Query: 116 P-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFV 174
P +V V+ AC + ++ELG+QVH + G N+ + +LI+ Y K +E A +
Sbjct: 218 PDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGEVETACGL 277
Query: 175 FSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC---GGV 231
F L + + W I + + F+EM R N T S+L AC G +
Sbjct: 278 FEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAI 337
Query: 232 DDDGNCGRQMHANIVK--IGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
D GR +H I K G+ + + L+DMY KC + A++VF+ ++ ++++SW
Sbjct: 338 D----IGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSML-TRSLSSW 392
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
NAM+ G+ +G A M+ +GI + L ACS
Sbjct: 393 NAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACS 435
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 122/253 (48%), Gaps = 13/253 (5%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L +N L+ ++ CG+++TA LF+ + +D SW +I GY + Y+E + LF EM++
Sbjct: 255 LKIVNALIDLYSKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLR 314
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKL--GSSRNISLTGSLINFYG 163
+ + ++ +L AC +++G+ +H + K G + SL SLI+ Y
Sbjct: 315 SGESPNDVT-----MLSILPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYA 369
Query: 164 KFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSS 223
K +E A VF + + W A I G + F+ F +M + I + TF
Sbjct: 370 KCGDIEAAKQVFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVG 429
Query: 224 VLKAC---GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELI 280
+L AC G +D + R M + KI + + Y C ++D+ G C L ++A+ + +
Sbjct: 430 LLSACSHSGMLDLGRHIFRSMSQD-YKITPKLEHY-GC-MIDLLGHCGLFKEAKEMIRTM 486
Query: 281 VDKKNIASWNAML 293
+ + W ++L
Sbjct: 487 PMEPDGVIWCSLL 499
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 74/312 (23%), Positives = 127/312 (40%), Gaps = 44/312 (14%)
Query: 62 LDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIV 121
L A +F+ + + W M G+ +D + L+ M+ FP
Sbjct: 38 LPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFP----- 92
Query: 122 CVLKACVCTMNMELGKQVHGLLFKLG-------------------------------SSR 150
+LK+C + G+Q+HG + KLG S R
Sbjct: 93 FLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHR 152
Query: 151 NISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMG 210
++ +LI Y +E+A +F ++ + V W A I G++ + FK+M
Sbjct: 153 DVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMM 212
Query: 211 RERIKKNSYTFSSVLKAC---GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKC 267
+ ++ + T +V+ AC G ++ GRQ+H I G S+ + L+D+Y KC
Sbjct: 213 KTNVRPDESTMVTVVSACAQSGSIE----LGRQVHLWIDDHGFGSNLKIVNALIDLYSKC 268
Query: 268 RLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDL 327
+ A +FE + K++ SWN ++ GY LY EA M SG + + +
Sbjct: 269 GEVETACGLFEGL-SYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSI 327
Query: 328 RIACSSISASKI 339
AC+ + A I
Sbjct: 328 LPACAHLGAIDI 339
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 90/229 (39%), Gaps = 34/229 (14%)
Query: 137 KQVHGLLFKLGSSRNISLTGSLINF---YGKFRCLEDADFVFSQLKRHNTVVWTAKIVNN 193
+ +H + K G LI F F L A VF ++ N ++W +
Sbjct: 4 RMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFRGH 63
Query: 194 CREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESD 253
+ M + N YTF +LK+C G+Q+H +++K+G + D
Sbjct: 64 ALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAK-SKAFREGQQIHGHVLKLGYDLD 122
Query: 254 EYVQCGLVDMYGKCRLLRDAERVFE------------LI------------------VDK 283
YV L+ MY + L DA +VF+ LI +
Sbjct: 123 LYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALIKGYASRGYIENAQKLFDEIPV 182
Query: 284 KNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
K++ SWNAM+ GY G Y EA + M + ++ ES + + AC+
Sbjct: 183 KDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACA 231
>gi|50428671|gb|AAT77022.1| putative PPR repeat protein [Oryza sativa Japonica Group]
gi|108712010|gb|ABF99805.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
Length = 725
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 80/262 (30%), Positives = 124/262 (47%), Gaps = 6/262 (2%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R +P L N LL ++ CG + AR LFD MP RD SW +I GY + + +
Sbjct: 3 RAAYRPGLFLRNNLLALYCRCGDMRHARLLFDGMPRRDAVSWNTLIAGYSGLGSCRLALD 62
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
F + G F A L +C + G+ VHGL G +R LT S+
Sbjct: 63 AFRDARASGDGVDRFTFAA-----ALASCARVGDWRDGRVVHGLAVVSGLARTAFLTNSV 117
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
I+ Y K +++ +F + + W + R G N M R +K +S
Sbjct: 118 IDMYAKCGMIDEVRLLFDRAEERGEASWNLLLSAYVRMGWPEVAVNVLVWMHRSGVKLDS 177
Query: 219 YTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE 278
+ +LKAC + D + R +H+ +VK+GL+ D +V +VDMY K L +A +VF+
Sbjct: 178 FALGGILKACSELGDSEDVRRMLHSCVVKVGLDLDVFVGSAMVDMYAKNGGLEEAIKVFD 237
Query: 279 LIVDKKNIASWNAMLVGYIRNG 300
I + +N+ +NAM+ G+ R G
Sbjct: 238 CIPN-QNVVVYNAMIAGFARLG 258
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/323 (25%), Positives = 150/323 (46%), Gaps = 13/323 (4%)
Query: 16 LIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLR 75
++K C+ DS +L+ +V + + + ++ M+ G L+ A ++FD +P +
Sbjct: 183 ILKACSELGDSEDVRRMLHSCVVKVGLDLDVFVGSAMVDMYAKNGGLEEAIKVFDCIPNQ 242
Query: 76 DFNSWAVMIVGYVDVADYQ------ECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVC 129
+ + MI G+ + + E +TLF+ M+K++ F + VL+ C
Sbjct: 243 NVVVYNAMIAGFARLGNDPCPEIRIEAVTLFSNMLKKRIKPSKFTFKS-----VLEVCNL 297
Query: 130 TMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAK 189
T + G+Q+H + G + + LIN Y K RC+ D+ F + + +WT+
Sbjct: 298 TNAVRCGRQIHAHVILSGLQGDEFIASVLINLYSKARCVNDSLRCFDMTVKEDVFIWTSM 357
Query: 190 IVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIG 249
I + HF + F+E+ R + +T SSV+ AC + C +Q+H + VK G
Sbjct: 358 ITAFVQNEHFEKALYLFRELLYTRKGTDQFTISSVMSACAALSVPTTC-KQIHCHAVKTG 416
Query: 250 LESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFL 309
L+ + MY L+ +++ FE I + SW+AM++ Y +G +A +
Sbjct: 417 LDQFTVSGNSQIAMYRNIGDLKASKQTFEQI-SCLDTFSWSAMILSYAVHGYESKALELF 475
Query: 310 YLMKASGIQIQESLINDLRIACS 332
MK G+ + ES IACS
Sbjct: 476 EKMKNLGVMMNESASLAALIACS 498
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 84/185 (45%), Gaps = 2/185 (1%)
Query: 154 LTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRER 213
L +L+ Y + + A +F + R + V W I G + F++
Sbjct: 12 LRNNLLALYCRCGDMRHARLLFDGMPRRDAVSWNTLIAGYSGLGSCRLALDAFRDARASG 71
Query: 214 IKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDA 273
+ +TF++ L +C V D + GR +H V GL ++ ++DMY KC ++ +
Sbjct: 72 DGVDRFTFAAALASCARVGDWRD-GRVVHGLAVVSGLARTAFLTNSVIDMYAKCGMIDEV 130
Query: 274 ERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSS 333
+F+ +++ ASWN +L Y+R G A L M SG+++ + + ACS
Sbjct: 131 RLLFDR-AEERGEASWNLLLSAYVRMGWPEVAVNVLVWMHRSGVKLDSFALGGILKACSE 189
Query: 334 ISASK 338
+ S+
Sbjct: 190 LGDSE 194
>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
Length = 1005
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 88/282 (31%), Positives = 134/282 (47%), Gaps = 10/282 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ CG A F+ M RD +W +I GY + D I +F ++ +
Sbjct: 471 LVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKL------RL 524
Query: 112 LLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
+ P A +V V+ AC +++ G +HGL+ KLG + + +LI+ Y K L
Sbjct: 525 SAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPS 584
Query: 171 ADFVFSQLK-RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A+F+F++ + V W I + GH + + F +M E NS TF SVL A
Sbjct: 585 AEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAA 644
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ G HA I+++G S+ V L+DMY KC L +E++F + D K+ SW
Sbjct: 645 YLAAFRE-GMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLXYSEKLFNEM-DHKDTVSW 702
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
NAML GY +G A LM+ S +QI + AC
Sbjct: 703 NAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSAC 744
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 76/274 (27%), Positives = 132/274 (48%), Gaps = 10/274 (3%)
Query: 42 IKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFA 101
I +L L++M+ CG+ + A+QLF + RD +W+ +I V +E ++LF
Sbjct: 360 IDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQ 419
Query: 102 EMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINF 161
EM +K + ++ +L AC ++LGK +H K ++S +L++
Sbjct: 420 EMQNQKMKPNRVT-----LMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSM 474
Query: 162 YGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTF 221
Y K A F+++ + V W + I + G + + F ++ I ++ T
Sbjct: 475 YAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTM 534
Query: 222 SSVLKACGGVDD--DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFEL 279
V+ AC ++D G C +H IVK+G ESD +V+ L+DMY KC L AE +F
Sbjct: 535 VGVVPACALLNDLDQGTC---IHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNK 591
Query: 280 IVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMK 313
K+ +WN ++ Y++NG EA + M+
Sbjct: 592 TDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMR 625
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 79/283 (27%), Positives = 135/283 (47%), Gaps = 7/283 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ ++ CG +D AR++FD+M +D SW M+ GY + E + LF +M K G
Sbjct: 267 NGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKM---KLG 323
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
++ + + V A T+++E GK++HG + +I + L+ Y K E
Sbjct: 324 NVRINKVS--AVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETE 381
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A +F L+ + V W+A I + G+ + + F+EM +++K N T S+L AC
Sbjct: 382 KAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACA 441
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ G+ +H VK ++SD LV MY KC A F + ++I +W
Sbjct: 442 DL-SLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRM-SSRDIVTW 499
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
N+++ GY + G A Y ++ S I + + AC+
Sbjct: 500 NSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACA 542
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/277 (25%), Positives = 127/277 (45%), Gaps = 10/277 (3%)
Query: 63 DTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVC 122
D AR +FD P W MI Y Y E + ++ M+++ L +
Sbjct: 80 DLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKG-----LEPDKYTFTF 134
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
VLKAC +N++ G HG + + G R++ + L++ Y K L+ A VF ++ + +
Sbjct: 135 VLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRD 194
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
V W A I + + + F+ M ++ +S + ++ + + C R +H
Sbjct: 195 VVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELC-RSIH 253
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
+ + S V GL+D+Y KC + A RVF+ +VD+ ++ SW M+ GY NG +
Sbjct: 254 GYVFRRDFSS--AVSNGLIDLYSKCGDVDVARRVFDQMVDQDDV-SWGTMMAGYAHNGCF 310
Query: 303 VEATKFLYLMKASGIQIQE-SLINDLRIACSSISASK 338
VE + MK ++I + S ++ A +I K
Sbjct: 311 VEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEK 347
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 113/248 (45%), Gaps = 12/248 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPL-RDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
N L+ M+ CG L +A LF++ +D +W V+I Y+ +E I+ F +M
Sbjct: 570 NALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENF 629
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+ F V VL A G H + ++G N + SLI+ Y K L
Sbjct: 630 HPNSVTF-----VSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQL 684
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
++ +F+++ +TV W A + GH + F M +++ +S +F SVL AC
Sbjct: 685 XYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSAC 744
Query: 229 --GGVDDDGNCGRQMHANIVKIGLESD-EYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
G+ ++G + H+ K ++ D E+ C +VD+ G+ L + +++ + +
Sbjct: 745 RHXGLVEEGR--KIFHSMSDKYHIKPDLEHYAC-MVDLLGRAGLFDETLGFIKVMPVEPD 801
Query: 286 IASWNAML 293
W A+L
Sbjct: 802 AGVWGALL 809
>gi|225431511|ref|XP_002274999.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
[Vitis vinifera]
gi|296088567|emb|CBI37558.3| unnamed protein product [Vitis vinifera]
Length = 492
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 92/326 (28%), Positives = 152/326 (46%), Gaps = 9/326 (2%)
Query: 8 ITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQ 67
IT +C++++C + A + I I P + LLL++ CG L AR+
Sbjct: 4 ITASSLSCILRKCVPHSAISQAKQTHAQILVHGFI-PNITLQTDLLLVYSKCGVLQDARK 62
Query: 68 LFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKAC 127
+FD+M R+ +SW ++I Y + + + +F +K P V KAC
Sbjct: 63 VFDKMVERNMHSWNILIASYAHNCFFYDALGVFDSFLKMGFRPDHFTLPP-----VFKAC 117
Query: 128 VCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWT 187
+ LGK +H + ++G + + S+++FY K L DA F + ++VVW
Sbjct: 118 AGIGDSYLGKMLHSWVIRIGFEEYVVVGSSVLDFYAKCGGLVDAWRCFVNMSWRDSVVWN 177
Query: 188 AKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVK 247
IV + F F++M E +K +S T S+L CGG + D G+++H +VK
Sbjct: 178 LMIVGLGKACFFRDALECFRDMLSEGVKMDSRTVPSILSVCGG-EGDLMKGKEIHGQVVK 236
Query: 248 IGLESDEY-VQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEAT 306
+ E + L+DMY KC L D+E+VF + + N+ +W +M+ Y +G EA
Sbjct: 237 NQIFGCEVAIGNSLIDMYAKCGCLHDSEKVFT-TMSELNLVTWTSMISCYGVHGKGHEAL 295
Query: 307 KFLYLMKASGIQIQESLINDLRIACS 332
MK G Q I + +CS
Sbjct: 296 ALFKKMKYCGFQPNCVTITAILASCS 321
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/267 (27%), Positives = 127/267 (47%), Gaps = 24/267 (8%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R+ + ++ + +L + CG L A + F M RD W +MIVG +++ +
Sbjct: 135 RIGFEEYVVVGSSVLDFYAKCGGLVDAWRCFVNMSWRDSVVWNLMIVGLGKACFFRDALE 194
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFK---LGSSRNISLT 155
F +M+ P+ +L C ++ GK++HG + K G +++
Sbjct: 195 CFRDMLSEGVKMDSRTVPS-----ILSVCGGEGDLMKGKEIHGQVVKNQIFGC--EVAIG 247
Query: 156 GSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIK 215
SLI+ Y K CL D++ VF+ + N V WT+ I G H+ FK+M +
Sbjct: 248 NSLIDMYAKCGCLHDSEKVFTTMSELNLVTWTSMISCYGVHGKGHEALALFKKMKYCGFQ 307
Query: 216 KNSYTFSSVLKACG--GVDDDGNCGRQMHANI-VKIGLE-SDEYVQCGLVDMYGKCRLLR 271
N T +++L +C G+ + G R++ +I + G E S E+ C +VD+ G+ L
Sbjct: 308 PNCVTITAILASCSHSGLIEQG---RKIFYSINLDYGFEPSAEHYAC-MVDLLGRFGYLE 363
Query: 272 DAERVFELIVDKKNIAS---WNAMLVG 295
+A FELI + K+ A+ W A+L G
Sbjct: 364 EA---FELIKNMKSAATASVWGALLAG 387
>gi|15231572|ref|NP_189286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75273843|sp|Q9LRV2.1|PP256_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g26540
gi|9293933|dbj|BAB01836.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332643655|gb|AEE77176.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 700
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 100/359 (27%), Positives = 158/359 (44%), Gaps = 37/359 (10%)
Query: 7 PITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTAR 66
P++ +Y L + C+ + A ++ +H+ + P L LNR + + CG +D AR
Sbjct: 58 PVSYWLYERLFRSCSSKALVVQARKVQSHLVTFSPLPPIFL-LNRAIEAYGKCGCVDDAR 116
Query: 67 QLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKA 126
+LF+EMP RD SW +I E +F M + F VLK+
Sbjct: 117 ELFEEMPERDGGSWNAVITACAQNGVSDEVFRMFRRMNRDGVRATETSFAG-----VLKS 171
Query: 127 CVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVW 186
C +++ L +Q+H + K G S N+ L S+++ YGK R + DA VF ++ + V W
Sbjct: 172 CGLILDLRLLRQLHCAVVKYGYSGNVDLETSIVDVYGKCRVMSDARRVFDEIVNPSDVSW 231
Query: 187 TAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIV 246
+ G + F +M ++ ++T SSV+ AC G+ +HA V
Sbjct: 232 NVIVRRYLEMGFNDEAVVMFFKMLELNVRPLNHTVSSVMLACSR-SLALEVGKVIHAIAV 290
Query: 247 KIGLESDEYVQCGLVDMYGKCRLLRDAERVFEL--------------------------- 279
K+ + +D V + DMY KC L A RVF+
Sbjct: 291 KLSVVADTVVSTSVFDMYVKCDRLESARRVFDQTRSKDLKSWTSAMSGYAMSGLTREARE 350
Query: 280 ---IVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
++ ++NI SWNAML GY+ + EA FL LM+ I + + CS IS
Sbjct: 351 LFDLMPERNIVSWNAMLGGYVHAHEWDEALDFLTLMRQEIENIDNVTLVWILNVCSGIS 409
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 76/260 (29%), Positives = 133/260 (51%), Gaps = 9/260 (3%)
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI 119
G AR+LFD MP R+ SW M+ GYV ++ E + F +M+++ ++ V WI
Sbjct: 343 GLTREARELFDLMPERNIVSWNAMLGGYVHAHEWDEALD-FLTLMRQEIENIDNVTLVWI 401
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
L C ++++GKQ HG +++ G N+ + +L++ YGK L+ A+ F Q+
Sbjct: 402 ----LNVCSGISDVQMGKQAHGFIYRHGYDTNVIVANALLDMYGKCGTLQSANIWFRQMS 457
Query: 180 R-HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCG 238
+ V W A + R G Q + F+ M E K + YT +++L C + N G
Sbjct: 458 ELRDEVSWNALLTGVARVGRSEQALSFFEGMQVE-AKPSKYTLATLLAGCANI-PALNLG 515
Query: 239 RQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIR 298
+ +H +++ G + D ++ +VDMY KCR A VF+ +++ WN+++ G R
Sbjct: 516 KAIHGFLIRDGYKIDVVIRGAMVDMYSKCRCFDYAIEVFKEAA-TRDLILWNSIIRGCCR 574
Query: 299 NGLYVEATKFLYLMKASGIQ 318
NG E + L++ G++
Sbjct: 575 NGRSKEVFELFMLLENEGVK 594
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 79/312 (25%), Positives = 136/312 (43%), Gaps = 44/312 (14%)
Query: 59 CGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK---RKKGHMLLVF 115
C + AR++FDE+ SW V++ Y+++ E + +F +M++ R H
Sbjct: 210 CRVMSDARRVFDEIVNPSDVSWNVIVRRYLEMGFNDEAVVMFFKMLELNVRPLNH----- 264
Query: 116 PAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVF 175
+ V+ AC ++ +E+GK +H + KL + ++ S+ + Y K LE A VF
Sbjct: 265 ---TVSSVMLACSRSLALEVGKVIHAIAVKLSVVADTVVSTSVFDMYVKCDRLESARRVF 321
Query: 176 SQLKRHNTVVWTAKIVNNCREG----------------------------HFHQVFN--D 205
Q + + WT+ + G H H+ D
Sbjct: 322 DQTRSKDLKSWTSAMSGYAMSGLTREARELFDLMPERNIVSWNAMLGGYVHAHEWDEALD 381
Query: 206 FKEMGRERIKK-NSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMY 264
F + R+ I+ ++ T +L C G+ D G+Q H I + G +++ V L+DMY
Sbjct: 382 FLTLMRQEIENIDNVTLVWILNVCSGISDV-QMGKQAHGFIYRHGYDTNVIVANALLDMY 440
Query: 265 GKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLI 324
GKC L+ A F + + ++ SWNA+L G R G +A F M+ + +L
Sbjct: 441 GKCGTLQSANIWFRQMSELRDEVSWNALLTGVARVGRSEQALSFFEGMQVEAKPSKYTLA 500
Query: 325 NDLRIACSSISA 336
L C++I A
Sbjct: 501 T-LLAGCANIPA 511
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 88/184 (47%), Gaps = 7/184 (3%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMP-LRDFNSWAVMIVGYVDVADYQECITLFAEMM 104
++ N LL M+ CG L +A F +M LRD SW ++ G V ++ ++ F M
Sbjct: 430 VIVANALLDMYGKCGTLQSANIWFRQMSELRDEVSWNALLTGVARVGRSEQALSFFEGMQ 489
Query: 105 KRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
K + + +L C + LGK +HG L + G ++ + G++++ Y K
Sbjct: 490 VEAKP------SKYTLATLLAGCANIPALNLGKAIHGFLIRDGYKIDVVIRGAMVDMYSK 543
Query: 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
RC + A VF + + ++W + I CR G +VF F + E +K + TF +
Sbjct: 544 CRCFDYAIEVFKEAATRDLILWNSIIRGCCRNGRSKEVFELFMLLENEGVKPDHVTFLGI 603
Query: 225 LKAC 228
L+AC
Sbjct: 604 LQAC 607
>gi|222626139|gb|EEE60271.1| hypothetical protein OsJ_13308 [Oryza sativa Japonica Group]
Length = 758
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 80/262 (30%), Positives = 124/262 (47%), Gaps = 6/262 (2%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R +P L N LL ++ CG + AR LFD MP RD SW +I GY + + +
Sbjct: 3 RAAYRPGLFLRNNLLALYCRCGDMRHARLLFDGMPRRDAVSWNTLIAGYSGLGSCRLALD 62
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
F + G F A L +C + G+ VHGL G +R LT S+
Sbjct: 63 AFRDARASGDGVDRFTFAA-----ALASCARVGDWRDGRVVHGLAVVSGLARTAFLTNSV 117
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
I+ Y K +++ +F + + W + R G N M R +K +S
Sbjct: 118 IDMYAKCGMIDEVRLLFDRAEERGEASWNLLLSAYVRMGWPEVAVNVLVWMHRSGVKLDS 177
Query: 219 YTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE 278
+ +LKAC + D + R +H+ +VK+GL+ D +V +VDMY K L +A +VF+
Sbjct: 178 FALGGILKACSELGDSEDVRRMLHSCVVKVGLDLDVFVGSAMVDMYAKNGGLEEAIKVFD 237
Query: 279 LIVDKKNIASWNAMLVGYIRNG 300
I + +N+ +NAM+ G+ R G
Sbjct: 238 CIPN-QNVVVYNAMIAGFARLG 258
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/323 (25%), Positives = 150/323 (46%), Gaps = 13/323 (4%)
Query: 16 LIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLR 75
++K C+ DS +L+ +V + + + ++ M+ G L+ A ++FD +P +
Sbjct: 183 ILKACSELGDSEDVRRMLHSCVVKVGLDLDVFVGSAMVDMYAKNGGLEEAIKVFDCIPNQ 242
Query: 76 DFNSWAVMIVGYVDVADYQ------ECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVC 129
+ + MI G+ + + E +TLF+ M+K++ F + VL+ C
Sbjct: 243 NVVVYNAMIAGFARLGNDPCPEIRIEAVTLFSNMLKKRIKPSKFTFKS-----VLEVCNL 297
Query: 130 TMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAK 189
T + G+Q+H + G + + LIN Y K RC+ D+ F + + +WT+
Sbjct: 298 TNAVRCGRQIHAHVILSGLQGDEFIASVLINLYSKARCVNDSLRCFDMTVKEDVFIWTSM 357
Query: 190 IVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIG 249
I + HF + F+E+ R + +T SSV+ AC + C +Q+H + VK G
Sbjct: 358 ITAFVQNEHFEKALYLFRELLYTRKGTDQFTISSVMSACAALSVPTTC-KQIHCHAVKTG 416
Query: 250 LESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFL 309
L+ + MY L+ +++ FE I + SW+AM++ Y +G +A +
Sbjct: 417 LDQFTVSGNSQIAMYRNIGDLKASKQTFEQI-SCLDTFSWSAMILSYAVHGYESKALELF 475
Query: 310 YLMKASGIQIQESLINDLRIACS 332
MK G+ + ES IACS
Sbjct: 476 EKMKNLGVMMNESASLAALIACS 498
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 84/185 (45%), Gaps = 2/185 (1%)
Query: 154 LTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRER 213
L +L+ Y + + A +F + R + V W I G + F++
Sbjct: 12 LRNNLLALYCRCGDMRHARLLFDGMPRRDAVSWNTLIAGYSGLGSCRLALDAFRDARASG 71
Query: 214 IKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDA 273
+ +TF++ L +C V D + GR +H V GL ++ ++DMY KC ++ +
Sbjct: 72 DGVDRFTFAAALASCARVGDWRD-GRVVHGLAVVSGLARTAFLTNSVIDMYAKCGMIDEV 130
Query: 274 ERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSS 333
+F+ +++ ASWN +L Y+R G A L M SG+++ + + ACS
Sbjct: 131 RLLFDR-AEERGEASWNLLLSAYVRMGWPEVAVNVLVWMHRSGVKLDSFALGGILKACSE 189
Query: 334 ISASK 338
+ S+
Sbjct: 190 LGDSE 194
>gi|222616424|gb|EEE52556.1| hypothetical protein OsJ_34807 [Oryza sativa Japonica Group]
Length = 1215
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 86/298 (28%), Positives = 140/298 (46%), Gaps = 6/298 (2%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R ++ ++ +N L+ M+ + G+L A LF M RD SW MI YV + + +
Sbjct: 576 RSSLDSSVTVINALVNMYSAAGKLSDAEFLFWNMSRRDLISWNTMISSYVQNCNSTDALK 635
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
++ + L F + L AC + GK VH ++ +L RN+ + SL
Sbjct: 636 TLGQLFHTNESPNHLTFSS-----ALGACSSPGALIDGKMVHAIVLQLSLQRNLLVGNSL 690
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
I YGK +EDA+ VF + H+ V + I + F M IK N
Sbjct: 691 ITMYGKCNSMEDAEKVFQSMPTHDIVSYNVLIGGYAVLEDGTKAMQVFSWMRSAGIKPNY 750
Query: 219 YTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE 278
T ++ + +D N GR +HA I++ G SDEYV L+ MY KC L + +F
Sbjct: 751 ITMINIHGSFASSNDLHNYGRPLHAYIIRTGFLSDEYVANSLITMYAKCGNLESSTNIFN 810
Query: 279 LIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
I + KNI SWNA++ ++ G EA K M+ +G ++ + + +C+S+++
Sbjct: 811 SITN-KNIVSWNAIIAANVQLGHGEEALKLFIDMQHAGNKLDRVCLAECLSSCASLAS 867
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 83/315 (26%), Positives = 146/315 (46%), Gaps = 17/315 (5%)
Query: 25 DSAGAF---ELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWA 81
S GA ++++ I +++++ LL N L+ M+ C ++ A ++F MP D S+
Sbjct: 660 SSPGALIDGKMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPTHDIVSYN 719
Query: 82 VMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN--MELGKQV 139
V+I GY + D + + +F+ M R G + P +I + + + N G+ +
Sbjct: 720 VLIGGYAVLEDGTKAMQVFSWM--RSAG----IKPNYITMINIHGSFASSNDLHNYGRPL 773
Query: 140 HGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHF 199
H + + G + + SLI Y K LE + +F+ + N V W A I N + GH
Sbjct: 774 HAYIIRTGFLSDEYVANSLITMYAKCGNLESSTNIFNSITNKNIVSWNAIIAANVQLGHG 833
Query: 200 HQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCG 259
+ F +M K + + L +C + G Q+H +K GL+SD YV
Sbjct: 834 EEALKLFIDMQHAGNKLDRVCLAECLSSCASLASLEE-GMQLHGLGMKSGLDSDSYVVNA 892
Query: 260 LVDMYGKCRLLRDAERVFELIVDK--KNIASWNAMLVGYIRNGLYVEATKFLYLMKASGI 317
+DMYGKC + + + +++ D+ + WN ++ GY + G + EA + M A+G
Sbjct: 893 AMDMYGKCGKM---DEMLQVVPDQAIRPQQCWNTLISGYAKYGYFKEAEETFKQMVATGR 949
Query: 318 QIQESLINDLRIACS 332
+ L ACS
Sbjct: 950 KPDYVTFVALLSACS 964
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 71/272 (26%), Positives = 127/272 (46%), Gaps = 13/272 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M + G++ A +LFD M D SW MI Y +C +F++M
Sbjct: 486 NSLITMFGNLGRVHDAEKLFDRMEEHDTISWNAMISMYSHQGICSKCFLVFSDMR----- 540
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
H L A + ++ C + + G +H L + ++++ +L+N Y L
Sbjct: 541 HHGLRPDATTLCSLMSVCASSDHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLS 600
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC- 228
DA+F+F + R + + W I + + + ++ N TFSS L AC
Sbjct: 601 DAEFLFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNESPNHLTFSSALGACS 660
Query: 229 --GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
G + D G+ +HA ++++ L+ + V L+ MYGKC + DAE+VF+ + +I
Sbjct: 661 SPGALID----GKMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSM-PTHDI 715
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
S+N ++ GY +A + M+++GI+
Sbjct: 716 VSYNVLIGGYAVLEDGTKAMQVFSWMRSAGIK 747
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 65/267 (24%), Positives = 125/267 (46%), Gaps = 4/267 (1%)
Query: 67 QLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKA 126
LFDEM R ++W + G V + + + M R+ G L F +V +
Sbjct: 298 HLFDEMADRTPSTWYTAVSGCVRCGSHGKAFEMLRGM--REPGVPLSGFALASLVTACER 355
Query: 127 CVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVW 186
+ G +H L + G N+ + +L++ YG + DA +F ++ N V W
Sbjct: 356 RGRDEGIACGAAIHALTHRAGLMGNVYIGTALLHLYGSRGIVSDAQRLFWEMPERNVVSW 415
Query: 187 TAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIV 246
TA +V G+ + +++M R+ + N+ F++V+ CG ++++ G Q+ + ++
Sbjct: 416 TALMVALSSNGYLEEALRAYRQMRRDGVPCNANAFATVVSLCGSLENE-VPGLQVASQVI 474
Query: 247 KIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEAT 306
GL++ V L+ M+G + DAE++F+ + + I SWNAM+ Y G+ +
Sbjct: 475 VSGLQNQVSVANSLITMFGNLGRVHDAEKLFDRMEEHDTI-SWNAMISMYSHQGICSKCF 533
Query: 307 KFLYLMKASGIQIQESLINDLRIACSS 333
M+ G++ + + L C+S
Sbjct: 534 LVFSDMRHHGLRPDATTLCSLMSVCAS 560
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 78/309 (25%), Positives = 138/309 (44%), Gaps = 15/309 (4%)
Query: 6 LPITTDMYTCLIKECTFQKDSAG-----AFELLNHIRKRVNIKPTLLFLNRLLLMHVSCG 60
+P++ L+ C + G A L H R + + LL ++ S G
Sbjct: 339 VPLSGFALASLVTACERRGRDEGIACGAAIHALTH---RAGLMGNVYIGTALLHLYGSRG 395
Query: 61 QLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWII 120
+ A++LF EMP R+ SW ++V +E + + +M R+ G + A
Sbjct: 396 IVSDAQRLFWEMPERNVVSWTALMVALSSNGYLEEALRAYRQM--RRDG---VPCNANAF 450
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
V+ C N G QV + G +S+ SLI +G + DA+ +F +++
Sbjct: 451 ATVVSLCGSLENEVPGLQVASQVIVSGLQNQVSVANSLITMFGNLGRVHDAEKLFDRMEE 510
Query: 181 HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQ 240
H+T+ W A I +G + F F +M ++ ++ T S++ C D + G
Sbjct: 511 HDTISWNAMISMYSHQGICSKCFLVFSDMRHHGLRPDATTLCSLMSVCASSDHFSH-GSG 569
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
+H+ ++ L+S V LV+MY L DAE +F + ++++ SWN M+ Y++N
Sbjct: 570 IHSLCLRSSLDSSVTVINALVNMYSAAGKLSDAEFLF-WNMSRRDLISWNTMISSYVQNC 628
Query: 301 LYVEATKFL 309
+A K L
Sbjct: 629 NSTDALKTL 637
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/259 (23%), Positives = 110/259 (42%), Gaps = 35/259 (13%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ CG L+++ +F+ + ++ SW +I V + +E + LF +M + G
Sbjct: 790 NSLITMYAKCGNLESSTNIFNSITNKNIVSWNAIIAANVQLGHGEEALKLFIDM--QHAG 847
Query: 110 HMLLVFPAWIIVCV---LKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166
+ L VC+ L +C ++E G Q+HGL K G + + + ++ YGK
Sbjct: 848 NKL------DRVCLAECLSSCASLASLEEGMQLHGLGMKSGLDSDSYVVNAAMDMYGKCG 901
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
+++ V W I + G+F + FK+M K + TF ++L
Sbjct: 902 KMDEMLQVVPDQAIRPQQCWNTLISGYAKYGYFKEAEETFKQMVATGRKPDYVTFVALLS 961
Query: 227 ACGGVDDDGNCGRQMHANIVKIGLE------SDEYVQCGL------VDMYGKCRLLRDAE 274
AC HA +V G++ S V G+ VD+ G+ +AE
Sbjct: 962 ACS------------HAGLVDKGIDYYNSMASSFGVSPGIKHCVCIVDLLGRLGRFAEAE 1009
Query: 275 RVFELIVDKKNIASWNAML 293
+ E + N W ++L
Sbjct: 1010 KFIEEMPVLPNDLIWRSLL 1028
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 88/201 (43%), Gaps = 6/201 (2%)
Query: 139 VHGLLFKLGSSRNISLTGSLINFYGKFRCLEDAD---FVFSQLKRHNTVVWTAKIVNNCR 195
+HGL +L + +L+ FY + R A +F ++ W + R
Sbjct: 261 IHGLAVRLALPLSAFHRNTLLAFYFRQRDASAAAAALHLFDEMADRTPSTWYTAVSGCVR 320
Query: 196 EGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG--GVDDDGNCGRQMHANIVKIGLESD 253
G + F + M + + + +S++ AC G D+ CG +HA + GL +
Sbjct: 321 CGSHGKAFEMLRGMREPGVPLSGFALASLVTACERRGRDEGIACGAAIHALTHRAGLMGN 380
Query: 254 EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMK 313
Y+ L+ +YG ++ DA+R+F + ++N+ SW A++V NG EA + M+
Sbjct: 381 VYIGTALLHLYGSRGIVSDAQRLF-WEMPERNVVSWTALMVALSSNGYLEEALRAYRQMR 439
Query: 314 ASGIQIQESLINDLRIACSSI 334
G+ + + C S+
Sbjct: 440 RDGVPCNANAFATVVSLCGSL 460
>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g39620-like [Vitis vinifera]
Length = 1005
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 88/282 (31%), Positives = 134/282 (47%), Gaps = 10/282 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ CG A F+ M RD +W +I GY + D I +F ++ +
Sbjct: 471 LVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKL------RL 524
Query: 112 LLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
+ P A +V V+ AC +++ G +HGL+ KLG + + +LI+ Y K L
Sbjct: 525 SAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPS 584
Query: 171 ADFVFSQLK-RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A+F+F++ + V W I + GH + + F +M E NS TF SVL A
Sbjct: 585 AEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAA 644
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ G HA I+++G S+ V L+DMY KC L +E++F + D K+ SW
Sbjct: 645 YLAAFRE-GMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEM-DHKDTVSW 702
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
NAML GY +G A LM+ S +QI + AC
Sbjct: 703 NAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSAC 744
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 76/274 (27%), Positives = 132/274 (48%), Gaps = 10/274 (3%)
Query: 42 IKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFA 101
I +L L++M+ CG+ + A+QLF + RD +W+ +I V +E ++LF
Sbjct: 360 IDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQ 419
Query: 102 EMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINF 161
EM +K + ++ +L AC ++LGK +H K ++S +L++
Sbjct: 420 EMQNQKMKPNRVT-----LMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSM 474
Query: 162 YGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTF 221
Y K A F+++ + V W + I + G + + F ++ I ++ T
Sbjct: 475 YAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTM 534
Query: 222 SSVLKACGGVDD--DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFEL 279
V+ AC ++D G C +H IVK+G ESD +V+ L+DMY KC L AE +F
Sbjct: 535 VGVVPACALLNDLDQGTC---IHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNK 591
Query: 280 IVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMK 313
K+ +WN ++ Y++NG EA + M+
Sbjct: 592 TDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMR 625
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 79/283 (27%), Positives = 135/283 (47%), Gaps = 7/283 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ ++ CG +D AR++FD+M +D SW M+ GY + E + LF +M K G
Sbjct: 267 NGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKM---KLG 323
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
++ + + V A T+++E GK++HG + +I + L+ Y K E
Sbjct: 324 NVRINKVS--AVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETE 381
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A +F L+ + V W+A I + G+ + + F+EM +++K N T S+L AC
Sbjct: 382 KAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACA 441
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ G+ +H VK ++SD LV MY KC A F + ++I +W
Sbjct: 442 DL-SLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRM-SSRDIVTW 499
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
N+++ GY + G A Y ++ S I + + AC+
Sbjct: 500 NSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACA 542
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/277 (25%), Positives = 127/277 (45%), Gaps = 10/277 (3%)
Query: 63 DTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVC 122
D AR +FD P W MI Y Y E + ++ M+++ L +
Sbjct: 80 DLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKG-----LEPDKYTFTF 134
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
VLKAC +N++ G HG + + G R++ + L++ Y K L+ A VF ++ + +
Sbjct: 135 VLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRD 194
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
V W A I + + + F+ M ++ +S + ++ + + C R +H
Sbjct: 195 VVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELC-RSIH 253
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
+ + S V GL+D+Y KC + A RVF+ +VD+ ++ SW M+ GY NG +
Sbjct: 254 GYVFRRDFSS--AVSNGLIDLYSKCGDVDVARRVFDQMVDQDDV-SWGTMMAGYAHNGCF 310
Query: 303 VEATKFLYLMKASGIQIQE-SLINDLRIACSSISASK 338
VE + MK ++I + S ++ A +I K
Sbjct: 311 VEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEK 347
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 114/248 (45%), Gaps = 12/248 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPL-RDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
N L+ M+ CG L +A LF++ +D +W V+I Y+ +E I+ F +M
Sbjct: 570 NALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENF 629
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+ F V VL A G H + ++G N + SLI+ Y K L
Sbjct: 630 HPNSVTF-----VSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQL 684
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+ ++ +F+++ +TV W A + GH + F M +++ +S +F SVL AC
Sbjct: 685 DYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSAC 744
Query: 229 --GGVDDDGNCGRQMHANIVKIGLESD-EYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
G+ ++G + H+ K ++ D E+ C +VD+ G+ L + +++ + +
Sbjct: 745 RHAGLVEEGR--KIFHSMSDKYHIKPDLEHYAC-MVDLLGRAGLFDETLGFIKVMPVEPD 801
Query: 286 IASWNAML 293
W A+L
Sbjct: 802 AGVWGALL 809
>gi|225450928|ref|XP_002280725.1| PREDICTED: pentatricopeptide repeat-containing protein At3g05340
[Vitis vinifera]
Length = 656
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 85/290 (29%), Positives = 144/290 (49%), Gaps = 8/290 (2%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R N++ ++ N LL M+ CG+L A ++FD MP++D SW I G + D +
Sbjct: 82 RDNLRNVIVVWNSLLSMYSRCGELRDATKVFDHMPMKDTISWNSRISGLLGNGDIEMGFR 141
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
+F ++ + + F + VL AC + K +H L+F G R I++ +L
Sbjct: 142 VFKQLYESG----IYQFDQATLTTVLTACDKPEFCYVSKMIHSLVFLYGYEREITVGNAL 197
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFH-QVFNDFKEMGRERIKKN 217
I Y + C VF ++ N V WTA +++ +G F+ + F +M + N
Sbjct: 198 ITSYFRCGCCSSGRRVFDEMSEKNVVTWTA-VISGLSQGQFYEESLKLFGKMRDGPVDPN 256
Query: 218 SYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVF 277
S T+ S L AC G+ GRQ+H + K+G+ D ++ L+DMY KC L DA ++F
Sbjct: 257 SLTYLSSLMACSGLQAIRE-GRQIHGLVWKLGVHFDLCIESALMDMYSKCGSLEDAWKIF 315
Query: 278 ELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDL 327
E ++ + S +LVG +NG E+ + M +G+ I ++I+ +
Sbjct: 316 E-SAEEVDEVSMTVILVGLAQNGFEEESIQVFVKMVKNGVVIDPNMISAI 364
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 138/285 (48%), Gaps = 7/285 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ + CG + R++FDEM ++ +W +I G Y+E + LF +M
Sbjct: 195 NALITSYFRCGCCSSGRRVFDEMSEKNVVTWTAVISGLSQGQFYEESLKLFGKMRDGPVD 254
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
L + + L AC + G+Q+HGL++KLG ++ + +L++ Y K LE
Sbjct: 255 PNSLTY-----LSSLMACSGLQAIREGRQIHGLVWKLGVHFDLCIESALMDMYSKCGSLE 309
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
DA +F + + V T +V + G + F +M + + + S++L
Sbjct: 310 DAWKIFESAEEVDEVSMTVILVGLAQNGFEEESIQVFVKMVKNGVVIDPNMISAIL-GVF 368
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
G+D G+Q+H+ I+K S+ +V GL++MY KC L D+ ++F + ++N SW
Sbjct: 369 GIDTSLALGKQIHSLIIKKSFGSNYFVNNGLINMYSKCGDLDDSIKIF-CWMPQRNSVSW 427
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
N+M+ + R+G A + M+ G+ + L AC+ +
Sbjct: 428 NSMIAAFARHGNGSRALQLYEEMRLEGVWPTDVTFLSLLHACAHV 472
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 71/244 (29%), Positives = 116/244 (47%), Gaps = 9/244 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ CG L+ A ++F+ D S V++VG +E I +F +M+K
Sbjct: 298 LMDMYSKCGSLEDAWKIFESAEEVDEVSMTVILVGLAQNGFEEESIQVFVKMVKNG---- 353
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+V +I +L ++ LGKQ+H L+ K N + LIN Y K L+D+
Sbjct: 354 -VVIDPNMISAILGVFGIDTSLALGKQIHSLIIKKSFGSNYFVNNGLINMYSKCGDLDDS 412
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG-- 229
+F + + N+V W + I R G+ + ++EM E + TF S+L AC
Sbjct: 413 IKIFCWMPQRNSVSWNSMIAAFARHGNGSRALQLYEEMRLEGVWPTDVTFLSLLHACAHV 472
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
G+ + G + A IG + Y C +VDM G+ LL +A++ E + +K I W
Sbjct: 473 GLVEKGMGFLESMAKDYGIGPRMEHYA-C-VVDMMGRAGLLNEAKKFIERLPEKPGILVW 530
Query: 290 NAML 293
A+L
Sbjct: 531 QALL 534
>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 766
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 85/283 (30%), Positives = 136/283 (48%), Gaps = 15/283 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N ++ + G L AR+LFDE P RD +W M+ GYV E T F EM ++ +
Sbjct: 239 NTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNE- 297
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ + A ++ V T M++ ++ LF+ RNIS ++I YG+ +
Sbjct: 298 ---VSYNA-----MIAGYVQTKKMDIARE----LFESMPCRNISSWNTMITGYGQIGDIA 345
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A F + + + V W A I + GH+ + N F E+ ++ N TF L C
Sbjct: 346 QARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCA 405
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ G+Q+H VK+G + +V L+ MY KC + +A FE I ++K++ SW
Sbjct: 406 DIAAL-ELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGI-EEKDVVSW 463
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
N ML GY R+G +A MK +G++ E + + ACS
Sbjct: 464 NTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACS 506
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 111/247 (44%), Gaps = 11/247 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N ++ + G + AR+ FD MP RD SWA +I GY Y+E + +F E+ + +
Sbjct: 332 NTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGES 391
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
F C L C +ELGKQ+HG K+G + +L+ Y K ++
Sbjct: 392 LNRATFG-----CALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSID 446
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
+A+ F ++ + V W + R G Q F+ M +K + T VL AC
Sbjct: 447 EANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACS 506
Query: 230 --GVDDDGNCGRQMHANIVKIG-LESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
G+ D G ++ G + + ++ C ++D+ G+ L +A+ + + +
Sbjct: 507 HTGLLDRGT--EYFYSMTKDYGVIPTSKHYTC-MIDLLGRAGRLEEAQDLIRNMPFQPGA 563
Query: 287 ASWNAML 293
ASW A+L
Sbjct: 564 ASWGALL 570
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 65/313 (20%), Positives = 126/313 (40%), Gaps = 39/313 (12%)
Query: 33 LNHIRKRVNIKPT--LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDV 90
L R+ ++ P ++ N LL + G +D AR++FD MP ++ SW ++ YV
Sbjct: 127 LGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHN 186
Query: 91 ADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSR 150
+E LF K L+ +W C++ V + + LF R
Sbjct: 187 GRIEEACLLF-----ESKSDWDLI--SW--NCLMGGFVRKKKLGDAR----WLFDKMPVR 233
Query: 151 NISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMG 210
+ ++I+ Y + L A +F + + WTA + + G + F EM
Sbjct: 234 DAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEM- 292
Query: 211 RERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQC-------GLVDM 263
+KN ++++++ + + I E E + C ++
Sbjct: 293 ---PEKNEVSYNAMIAG------------YVQTKKMDIARELFESMPCRNISSWNTMITG 337
Query: 264 YGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESL 323
YG+ + A + F+++ +++ SW A++ GY ++G Y EA +K G + +
Sbjct: 338 YGQIGDIAQARKFFDMM-PQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRAT 396
Query: 324 INDLRIACSSISA 336
C+ I+A
Sbjct: 397 FGCALSTCADIAA 409
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 60/278 (21%), Positives = 112/278 (40%), Gaps = 24/278 (8%)
Query: 32 LLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVA 91
+ N+ + RV P +L N+ + H+ G D+A +F+ MP R S+ MI GY+ +
Sbjct: 36 VTNNNKPRVK-DPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNS 94
Query: 92 DYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRN 151
+ LF +M +R ++ ++ C L LF L ++
Sbjct: 95 KFNLARNLFDQMPERDLFSWNVMLTGYVRNCRLGDAR-------------RLFDLMPEKD 141
Query: 152 ISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGR 211
+ SL++ Y + +++A VF + N++ W + G + F+
Sbjct: 142 VVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFE---- 197
Query: 212 ERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLR 271
K+ + S GG G K+ + D ++ Y + L
Sbjct: 198 ---SKSDWDLISWNCLMGGFVRKKKLG-DARWLFDKMPVR-DAISWNTMISGYAQGGGLS 252
Query: 272 DAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFL 309
A R+F+ +++ +W AM+ GY++NG+ EA F
Sbjct: 253 QARRLFDE-SPTRDVFTWTAMVSGYVQNGMLDEAKTFF 289
>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 980
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 85/283 (30%), Positives = 136/283 (48%), Gaps = 15/283 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N ++ + G L AR+LFDE P RD +W M+ GYV E T F EM ++ +
Sbjct: 239 NTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNE- 297
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ + A ++ V T M++ ++ LF+ RNIS ++I YG+ +
Sbjct: 298 ---VSYNA-----MIAGYVQTKKMDIARE----LFESMPCRNISSWNTMITGYGQIGDIA 345
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A F + + + V W A I + GH+ + N F E+ ++ N TF L C
Sbjct: 346 QARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCA 405
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ G+Q+H VK+G + +V L+ MY KC + +A FE I ++K++ SW
Sbjct: 406 DIAAL-ELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGI-EEKDVVSW 463
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
N ML GY R+G +A MK +G++ E + + ACS
Sbjct: 464 NTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACS 506
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 111/247 (44%), Gaps = 11/247 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N ++ + G + AR+ FD MP RD SWA +I GY Y+E + +F E+ + +
Sbjct: 332 NTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGES 391
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
F C L C +ELGKQ+HG K+G + +L+ Y K ++
Sbjct: 392 LNRATFG-----CALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSID 446
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
+A+ F ++ + V W + R G Q F+ M +K + T VL AC
Sbjct: 447 EANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACS 506
Query: 230 --GVDDDGNCGRQMHANIVKIG-LESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
G+ D G ++ G + + ++ C ++D+ G+ L +A+ + + +
Sbjct: 507 HTGLLDRGT--EYFYSMTKDYGVIPTSKHYTC-MIDLLGRAGRLEEAQDLIRNMPFQPGA 563
Query: 287 ASWNAML 293
ASW A+L
Sbjct: 564 ASWGALL 570
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 65/316 (20%), Positives = 125/316 (39%), Gaps = 45/316 (14%)
Query: 33 LNHIRKRVNIKPT--LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDV 90
L R+ ++ P ++ N LL + G +D AR++FD MP ++ SW ++ YV
Sbjct: 127 LGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHN 186
Query: 91 ADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHG---LLFKLG 147
+E LF W ++ + C M + K+ G LF
Sbjct: 187 GRIEEACLLFESKSD------------WDLI----SWNCLMGGFVRKKKLGDARWLFDKM 230
Query: 148 SSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFK 207
R+ ++I+ Y + L A +F + + WTA + + G + F
Sbjct: 231 PVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFD 290
Query: 208 EMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQC-------GL 260
EM +KN ++++++ + + I E E + C +
Sbjct: 291 EM----PEKNEVSYNAMIAG------------YVQTKKMDIARELFESMPCRNISSWNTM 334
Query: 261 VDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQ 320
+ YG+ + A + F+++ +++ SW A++ GY ++G Y EA +K G +
Sbjct: 335 ITGYGQIGDIAQARKFFDMM-PQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLN 393
Query: 321 ESLINDLRIACSSISA 336
+ C+ I+A
Sbjct: 394 RATFGCALSTCADIAA 409
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 60/280 (21%), Positives = 112/280 (40%), Gaps = 28/280 (10%)
Query: 32 LLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVA 91
+ N+ + RV P +L N+ + H+ G D+A +F+ MP R S+ MI GY+ +
Sbjct: 36 VTNNNKPRVK-DPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNS 94
Query: 92 DYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRN 151
+ LF +M +R ++ ++ C L LF L ++
Sbjct: 95 KFNLARNLFDQMPERDLFSWNVMLTGYVRNCRLGDAR-------------RLFDLMPEKD 141
Query: 152 ISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGR 211
+ SL++ Y + +++A VF + N++ W + G + F+
Sbjct: 142 VVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFE---- 197
Query: 212 ERIKKNSYTFSSVLKACGGVDDDGNCG--RQMHANIVKIGLESDEYVQCGLVDMYGKCRL 269
K+ + S GG G R + + D ++ Y +
Sbjct: 198 ---SKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPV----RDAISWNTMISGYAQGGG 250
Query: 270 LRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFL 309
L A R+F+ +++ +W AM+ GY++NG+ EA F
Sbjct: 251 LSQARRLFDE-SPTRDVFTWTAMVSGYVQNGMLDEAKTFF 289
>gi|147819178|emb|CAN71462.1| hypothetical protein VITISV_018656 [Vitis vinifera]
Length = 787
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 75/279 (26%), Positives = 144/279 (51%), Gaps = 8/279 (2%)
Query: 59 CGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPA- 117
CG++D AR++FD + +D SW M+ + + ++E + LF++M M+ P
Sbjct: 187 CGRVDVAREVFDGILYKDMVSWTGMVTCFAENDCFKEALKLFSQM------RMVGFKPNN 240
Query: 118 WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQ 177
+ V KAC+ ++GK VHG K ++ + +L++ Y K ++DA F +
Sbjct: 241 FTFASVFKACLGLEAFDVGKSVHGCALKSRYELDLYVGVALLDLYTKSGDIDDARXAFEE 300
Query: 178 LKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC 237
+ + + + W+ I + + F +M + + N +TF+SVL+AC ++ N
Sbjct: 301 IPKKDVIPWSFMIARYAQSDQSKEAVEMFFQMRQALVLPNQFTFASVLQACATMEG-LNL 359
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYI 297
G Q+H +++KIGL SD +V L+D+Y KC + ++ +F + ++ WN ++VG++
Sbjct: 360 GNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMXLFAESPHRNDVTPWNTVIVGHV 419
Query: 298 RNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+ G +A + M +Q E + AC+S++A
Sbjct: 420 QLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAA 458
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 78/252 (30%), Positives = 130/252 (51%), Gaps = 10/252 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL ++ G +D AR F+E+P +D W+ MI Y +E + +F +M +
Sbjct: 281 LLDLYTKSGDIDDARXAFEEIPKKDVIPWSFMIARYAQSDQSKEAVEMFFQMRQA----- 335
Query: 112 LLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
LV P + VL+AC + LG Q+H + K+G ++ ++ +L++ Y K +E+
Sbjct: 336 -LVLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMEN 394
Query: 171 ADFVFSQLKRHNTVV-WTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
+ +F++ N V W IV + + G + F M R++ T+SS L+AC
Sbjct: 395 SMXLFAESPHRNDVTPWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACA 454
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ G Q+H+ VK + D V L+DMY KC ++DA VF+L+ +K++ SW
Sbjct: 455 SLAA-LEPGLQIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFDLM-NKQDEVSW 512
Query: 290 NAMLVGYIRNGL 301
NAM+ GY +GL
Sbjct: 513 NAMISGYSMHGL 524
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 87/291 (29%), Positives = 139/291 (47%), Gaps = 7/291 (2%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L N LL M+V L A +LFDEMP R+ S+ +I GY + + E I LF +
Sbjct: 73 LFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRL-- 130
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
++GH L F + +LK V ELG +H +FKLG N + +LI+ Y
Sbjct: 131 HREGHELNPF---VFTTILKLLVSMDCGELGWGIHACIFKLGHESNAFVGTALIDAYSVC 187
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
++ A VF + + V WT + F + F +M K N++TF+SV
Sbjct: 188 GRVDVAREVFDGILYKDMVSWTGMVTCFAENDCFKEALKLFSQMRMVGFKPNNFTFASVF 247
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
KAC G+ + + G+ +H +K E D YV L+D+Y K + DA FE I KK+
Sbjct: 248 KACLGL-EAFDVGKSVHGCALKSRYELDLYVGVALLDLYTKSGDIDDARXAFEEI-PKKD 305
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+ W+ M+ Y ++ EA + + M+ + + + + AC+++
Sbjct: 306 VIPWSFMIARYAQSDQSKEAVEMFFQMRQALVLPNQFTFASVLQACATMEG 356
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 79/160 (49%), Gaps = 6/160 (3%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLR-DFNSWAVMIVGYVDVADYQECI 97
++ + + N L+ ++ CG+++ + LF E P R D W +IVG+V + D ++ +
Sbjct: 369 KIGLHSDVFVSNALMDVYAKCGRMENSMXLFAESPHRNDVTPWNTVIVGHVQLGDGEKAL 428
Query: 98 TLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGS 157
LF M++ + + + + L+AC +E G Q+H L K ++I +T +
Sbjct: 429 RLFLNMLEYRVQATEVTYSS-----ALRACASLAALEPGLQIHSLTVKTTFDKDIVVTNA 483
Query: 158 LINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREG 197
LI+ Y K ++DA VF + + + V W A I G
Sbjct: 484 LIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMISGYSMHG 523
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 95/214 (44%), Gaps = 2/214 (0%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
L+ C+ GK +H + K G ++ L+N Y K L DA +F ++ N
Sbjct: 44 ALQDCIQKDEPSRGKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASKLFDEMPERN 103
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
T+ + I F + F + RE + N + F+++LK + D G G +H
Sbjct: 104 TISFVTLIQGYAESVRFLEAIELFVRLHREGHELNPFVFTTILKLLVSM-DCGELGWGIH 162
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
A I K+G ES+ +V L+D Y C + A VF+ I+ K++ SW M+ + N +
Sbjct: 163 ACIFKLGHESNAFVGTALIDAYSVCGRVDVAREVFDGIL-YKDMVSWTGMVTCFAENDCF 221
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
EA K M+ G + + AC + A
Sbjct: 222 KEALKLFSQMRMVGFKPNNFTFASVFKACLGLEA 255
>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
Length = 906
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 90/327 (27%), Positives = 155/327 (47%), Gaps = 14/327 (4%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRK-------RVNIKPTLLFLNRLLLMHVSCGQLDTA 65
+ +I C + A ELL +++ +++++ L L+ M+ C L+ A
Sbjct: 327 WNAVIAGCVLHEHHEQALELLGQMKRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDA 386
Query: 66 RQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLK 125
R F+ +P +D +W +I GY + E ++LF EM K G F + +LK
Sbjct: 387 RMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIG-----FNQTTLSTILK 441
Query: 126 ACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVV 185
+ + + +QVHGL K G +I + SLI+ YGK +EDA+ +F + + V
Sbjct: 442 STAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVS 501
Query: 186 WTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANI 245
+T+ I + G + F EM +K + + SS+L AC + G+Q+H +I
Sbjct: 502 FTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQ-GKQLHVHI 560
Query: 246 VKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEA 305
+K G D + LV+MY KC + DA R F + + + I SW+AM+ G ++G +A
Sbjct: 561 LKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTE-RGIVSWSAMIGGLAQHGHGRQA 619
Query: 306 TKFLYLMKASGIQIQESLINDLRIACS 332
+ M G+ + + AC+
Sbjct: 620 LQLFNQMLKEGVSPNHITLVSVLGACN 646
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 93/318 (29%), Positives = 151/318 (47%), Gaps = 15/318 (4%)
Query: 9 TTDMYTCLIKECTFQKDSAGAFELLNHIRKR-VNIKPTLLFLNRLLLMHVSCGQLDTARQ 67
T+ Y+ L+ +C K ++ HI K ++ P++ N L+ ++ C AR+
Sbjct: 55 TSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIR--NHLINLYSKCRXFGYARK 112
Query: 68 LFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVF-PAWIIVCVLKA 126
L DE D SW+ +I GY + F EM H+L V + VLKA
Sbjct: 113 LVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEM------HLLGVKCNEFTFSSVLKA 166
Query: 127 CVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVW 186
C ++ +GKQVHG++ G ++ + +L+ Y K D+ +F ++ N V W
Sbjct: 167 CSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSW 226
Query: 187 TAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIV 246
A + + F EM IK N ++ SS++ AC G+ D G+ +H ++
Sbjct: 227 NALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSR-GKIIHGYLI 285
Query: 247 KIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEAT 306
K+G + D + LVDMY K L DA VFE I + +I SWNA++ G + + + +A
Sbjct: 286 KLGYDWDPFSANALVDMYAKVGDLADAISVFEKI-KQPDIVSWNAVIAGCVLHEHHEQAL 344
Query: 307 KFLYLMKASGIQIQESLI 324
+ L MK Q+ SL+
Sbjct: 345 ELLGQMKR---QLHSSLM 359
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 82/279 (29%), Positives = 134/279 (48%), Gaps = 36/279 (12%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L++M+ C + +++LFDE+P R+ SW + YV E + LF EM+
Sbjct: 196 NTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQXDFCGEAVGLFYEMV----- 250
Query: 110 HMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+ + P + + ++ AC + GK +HG L KLG + +L++ Y K L
Sbjct: 251 -LSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDL 309
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
DA VF ++K+ + V W A ++ C V ++ E E +
Sbjct: 310 ADAISVFEKIKQPDIVSWNA-VIAGC-------VLHEHHEQALELL-------------- 347
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
G RQ+H++++K+ +ESD +V GLVDMY KC LL DA F L+ +K IA
Sbjct: 348 ------GQMKRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIA- 400
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDL 327
WNA++ GY + +EA M GI ++ ++ +
Sbjct: 401 WNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTI 439
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 73/215 (33%), Positives = 107/215 (49%), Gaps = 2/215 (0%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
+L C T ++ G Q+H + K G S + S+ LIN Y K R A + + +
Sbjct: 62 LLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRXFGYARKLVDESSEPD 121
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
V W+A I + G F EM +K N +TFSSVLKAC V D G+Q+H
Sbjct: 122 LVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDL-RIGKQVH 180
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
+V G E D +V LV MY KC D++R+F+ I ++N+ SWNA+ Y++
Sbjct: 181 GVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEI-PERNVVSWNALFSCYVQXDFC 239
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIACSSISAS 337
EA Y M SGI+ E ++ + AC+ + S
Sbjct: 240 GEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDS 274
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/258 (27%), Positives = 112/258 (43%), Gaps = 31/258 (12%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
+N L+ + C ++ A ++F+E + D S+ MI Y +E + LF EM
Sbjct: 471 VNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQD--- 527
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
M L ++ +L AC E GKQ+H + K G +I SL+N Y K +
Sbjct: 528 --MELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSI 585
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+DA FS+L V W+A I + GH Q F +M +E + N T SVL AC
Sbjct: 586 DDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGAC 645
Query: 229 GGVDDDGNCGRQMHANIV---KIGLES----------DEYVQCGLVDMYGKCRLLRDAER 275
HA +V K+ ES E+ C ++D+ G+ + +A
Sbjct: 646 N------------HAGLVTEAKLYFESMEELFGFKPMQEHYAC-MIDLLGRAGKINEAVE 692
Query: 276 VFELIVDKKNIASWNAML 293
+ + + N + W A+L
Sbjct: 693 LVNKMPFEANASVWGALL 710
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 62/125 (49%), Gaps = 2/125 (1%)
Query: 216 KNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAER 275
S ++S +L C G Q+HA+I K GL D ++ L+++Y KCR A +
Sbjct: 54 PTSVSYSKLLSQCC-TTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRXFGYARK 112
Query: 276 VFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
+ + + ++ SW+A++ GY +NGL A + M G++ E + + ACS +
Sbjct: 113 LVDE-SSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVK 171
Query: 336 ASKIN 340
+I
Sbjct: 172 DLRIG 176
>gi|449481491|ref|XP_004156199.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g13880-like [Cucumis sativus]
Length = 839
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 88/301 (29%), Positives = 147/301 (48%), Gaps = 16/301 (5%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
+ + +P L N LL M+ CG +A +LFD+M + ++ +I GYV +++ + +
Sbjct: 87 KTSFRPCLFLQNNLLNMYCKCGDTRSADKLFDKMSKSNIVTYNSLISGYVQMSNLDKVMI 146
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
LF + R+ G L + L AC + N+ GK +HGL+ G + LT SL
Sbjct: 147 LFDK--ARRLG---LKLDKYTCAGALTACSQSGNLSAGKMIHGLILVYGLGSQVVLTNSL 201
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
I+ Y K ++ A +F + + V W + I + G + ++ ++M + + N+
Sbjct: 202 IDMYSKCGQVDYARILFDHSDKLDGVSWNSLIAGYVQNGKYEELLTILQKMHQNGLAFNT 261
Query: 219 YTFSSVLKACGGVDDDGNC---GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAER 275
YT S LKAC + C G +H + +K+GL D V L+DMY K L DA +
Sbjct: 262 YTLGSALKACS--SNFNGCKMFGTMLHDHAIKLGLHLDVVVGTALLDMYAKTGSLDDAIQ 319
Query: 276 VFELIVDKKNIASWNAMLVGY-----IRNGLYVEATKFLYLMKASGIQIQESLINDLRIA 330
+F+ +VD KN+ +NAM+ G I + +A + MK+ GI+ + L A
Sbjct: 320 IFDQMVD-KNVVMYNAMMAGLLQQETIEDKCAYKALNLFFEMKSCGIKPSMFTYSSLLKA 378
Query: 331 C 331
C
Sbjct: 379 C 379
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 97/338 (28%), Positives = 162/338 (47%), Gaps = 17/338 (5%)
Query: 6 LPITTDMYTCL--IKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLD 63
L + D YTC + C+ Q + A ++++ + + ++ N L+ M+ CGQ+D
Sbjct: 154 LGLKLDKYTCAGALTACS-QSGNLSAGKMIHGLILVYGLGSQVVLTNSLIDMYSKCGQVD 212
Query: 64 TARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCV 123
AR LFD D SW +I GYV Y+E +T+ +M + L F + +
Sbjct: 213 YARILFDHSDKLDGVSWNSLIAGYVQNGKYEELLTILQKMHQNG-----LAFNTYTLGSA 267
Query: 124 LKACVCTMN--MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH 181
LKAC N G +H KLG ++ + +L++ Y K L+DA +F Q+
Sbjct: 268 LKACSSNFNGCKMFGTMLHDHAIKLGLHLDVVVGTALLDMYAKTGSLDDAIQIFDQMVDK 327
Query: 182 NTVVWTAKIVNNCREGHF-----HQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGN 236
N V++ A + ++ ++ N F EM IK + +T+SS+LKAC V+D
Sbjct: 328 NVVMYNAMMAGLLQQETIEDKCAYKALNLFFEMKSCGIKPSMFTYSSLLKACIIVED-FK 386
Query: 237 CGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGY 296
+Q+HA + K GL SDEY+ L+D+Y + DA F I I AM+ GY
Sbjct: 387 FAKQVHALMCKNGLLSDEYIGSILIDLYSVLGSMMDALLCFNSI-HNLTIVPMTAMIXGY 445
Query: 297 IRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
++NG + A Y + + E + + + +C+++
Sbjct: 446 LQNGEFESALSLFYELLTYEEKPDEFIXSTIMSSCANM 483
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/286 (25%), Positives = 126/286 (44%), Gaps = 12/286 (4%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQE-----CITLFAEMMKR 106
LL M+ G LD A Q+FD+M ++ + M+ G + ++ + LF EM
Sbjct: 304 LLDMYAKTGSLDDAIQIFDQMVDKNVVMYNAMMAGLLQQETIEDKCAYKALNLFFEMKSC 363
Query: 107 KKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166
+ + + +LKAC+ + + KQVH L+ K G + + LI+ Y
Sbjct: 364 GIKPSMFTYSS-----LLKACIIVEDFKFAKQVHALMCKNGLLSDEYIGSILIDLYSVLG 418
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
+ DA F+ + V TA I + G F + F E+ K + + S+++
Sbjct: 419 SMMDALLCFNSIHNLTIVPMTAMIXGYLQNGEFESALSLFYELLTYEEKPDEFIXSTIMS 478
Query: 227 ACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
+C + G Q+ + K+G+ Q + MY K L A F+ + + +I
Sbjct: 479 SCANMGML-RSGEQIQGHATKVGISRFTIFQNSQIWMYAKSGDLYAANLTFQQM-ENPDI 536
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
SW+ M+ ++G +EA +F LMK+ GI+ + IACS
Sbjct: 537 VSWSTMICSNAQHGHAMEALRFFELMKSCGIEPNHFAFLGVLIACS 582
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 105/231 (45%), Gaps = 15/231 (6%)
Query: 114 VFPAWI---------IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
VFPA+ V ++++ T + GK VH + K + L +L+N Y K
Sbjct: 47 VFPAYSSTFLLESVDYVKLVQSATKTGKLNHGKLVHSHMIKTSFRPCLFLQNNLLNMYCK 106
Query: 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
AD +F ++ + N V + + I + + +V F + R +K + YT +
Sbjct: 107 CGDTRSADKLFDKMSKSNIVTYNSLISGYVQMSNLDKVMILFDKARRLGLKLDKYTCAGA 166
Query: 225 LKACGGVDDDGN--CGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282
L AC GN G+ +H I+ GL S + L+DMY KC + A +F+ D
Sbjct: 167 LTAC---SQSGNLSAGKMIHGLILVYGLGSQVVLTNSLIDMYSKCGQVDYARILFDH-SD 222
Query: 283 KKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSS 333
K + SWN+++ GY++NG Y E L M +G+ + ACSS
Sbjct: 223 KLDGVSWNSLIAGYVQNGKYEELLTILQKMHQNGLAFNTYTLGSALKACSS 273
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/280 (23%), Positives = 119/280 (42%), Gaps = 45/280 (16%)
Query: 81 AVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVH 140
MI GY+ +++ ++LF E++ ++ +I ++ +C + G+Q+
Sbjct: 439 TAMIXGYLQNGEFESALSLFYELLTYEEKP-----DEFIXSTIMSSCANMGMLRSGEQIQ 493
Query: 141 GLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFH 200
G K+G SR S I Y K L A+ F Q++ + V W+ I +N + GH
Sbjct: 494 GHATKVGISRFTIFQNSQIWMYAKSGDLYAANLTFQQMENPDIVSWSTMICSNAQHGHAM 553
Query: 201 QVFNDFKEMGRERIKKNSYTFSSVLKACGG------------------------------ 230
+ F+ M I+ N + F VL AC
Sbjct: 554 EALRFFELMKSCGIEPNHFAFLGVLIACSHRGLVEEGLRYFDTMEKDYKMKLHVKHCVCV 613
Query: 231 VDDDGNCGRQMHAN--IVKIGLESDEYVQCGLVDMYGKCRLLRD---AERVFELIVDKKN 285
VD G GR A I+++G E + + L+ CR+ +D A+RV + +++ +
Sbjct: 614 VDLLGRAGRLADAESLILRLGFEHEPVMWRALLS---ACRIHKDTVTAQRVAQKVIELEP 670
Query: 286 IASWNAMLVG--YIRNGLYVEATKFLYLMKASGIQIQESL 323
+AS + +L+ Y+ G + A+K LM+ I+ + L
Sbjct: 671 LASASYVLLYNIYMDAGNKLAASKVRTLMEERRIKKEPGL 710
>gi|357118484|ref|XP_003560984.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03380,
mitochondrial-like [Brachypodium distachyon]
Length = 678
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 87/285 (30%), Positives = 147/285 (51%), Gaps = 14/285 (4%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L +N L+ M+ G L AR++FD +P R+ SW M+ G + +E + LF EM +
Sbjct: 162 LFVMNNLVDMYAKGGDLKNARKVFDRIPDRNVVSWTSMLSGCLQNGLAKEGLVLFNEMRQ 221
Query: 106 RKKGHMLLVFPA-WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
+ P+ + + VL AC ++ G+ +HG + K G N +T ++++ Y K
Sbjct: 222 ES------ILPSEYTMASVLMACTMLGSLHQGRLIHGSVMKHGLVSNHFITAAMLDMYVK 275
Query: 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
EDA VF +L + V+WT IV + G F + RI NS T ++V
Sbjct: 276 CGEAEDARQVFDELSFVDLVLWTTMIVGYTQNGSPLDALLLFVDDKFMRIVPNSVTIATV 335
Query: 225 LKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
L A + + + GR +H VK+G ++ V LVDMY KC+ L DA+ +F +++ K
Sbjct: 336 LSASAQLRNL-SLGRSIHGISVKLGAVENDVVMNALVDMYAKCKALSDAKGIFGRVLN-K 393
Query: 285 NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRI 329
++ +WN+++ GY N + +A LM S +++Q SL + + +
Sbjct: 394 DVVTWNSLIAGYAENDMGSDA-----LMLFSHMRVQGSLPDAISV 433
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 82/283 (28%), Positives = 127/283 (44%), Gaps = 11/283 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
+L M+V CG+ + ARQ+FDE+ D W MIVGY + + LF + M
Sbjct: 269 MLDMYVKCGEAEDARQVFDELSFVDLVLWTTMIVGYTQNGSPLDALLLFVD-----DKFM 323
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+V + I VL A N+ LG+ +HG+ KLG+ N + +L++ Y K + L DA
Sbjct: 324 RIVPNSVTIATVLSASAQLRNLSLGRSIHGISVKLGAVENDVVMNALVDMYAKCKALSDA 383
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
+F ++ + V W + I F M + ++ + + L AC +
Sbjct: 384 KGIFGRVLNKDVVTWNSLIAGYAENDMGSDALMLFSHMRVQGSLPDAISVVNALSACVCL 443
Query: 232 DD--DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
D G C H VK S+ YV L+++Y KC L A+RVF + D +N +W
Sbjct: 444 GDLLIGKC---FHTYAVKHAFMSNIYVNTALLNLYNKCADLPSAQRVFSEMND-RNTVTW 499
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
AM+ GY G + M IQ E++ + CS
Sbjct: 500 GAMIGGYGMQGDSAGSIDLFNEMLKDNIQPNEAVFTSILSTCS 542
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 81/299 (27%), Positives = 144/299 (48%), Gaps = 22/299 (7%)
Query: 23 QKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMH------------VSC----GQLDTAR 66
+ S A LL+ + P+L L+ LL H +SC G L +AR
Sbjct: 21 RASSPDANPLLHRLLPACTTLPSLRALHARLLAHGLLRGLRAHTKLLSCYAALGDLASAR 80
Query: 67 QLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKA 126
++ DE P D ++ V + + + E + + +M +R V ++ LKA
Sbjct: 81 RVLDETPHPDAYTYKVALGWHAAAGRHAEAVAVHRDMRRRCPAEQEDVV---VLSLALKA 137
Query: 127 CVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVW 186
V + + G+++H + K G ++ + +L++ Y K L++A VF ++ N V W
Sbjct: 138 AVRSADFGYGRRLHCDVVKAGGG-DLFVMNNLVDMYAKGGDLKNARKVFDRIPDRNVVSW 196
Query: 187 TAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIV 246
T+ + + G + F EM +E I + YT +SVL AC + + GR +H +++
Sbjct: 197 TSMLSGCLQNGLAKEGLVLFNEMRQESILPSEYTMASVLMACTMLGSL-HQGRLIHGSVM 255
Query: 247 KIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEA 305
K GL S+ ++ ++DMY KC DA +VF+ + ++ W M+VGY +NG ++A
Sbjct: 256 KHGLVSNHFITAAMLDMYVKCGEAEDARQVFDEL-SFVDLVLWTTMIVGYTQNGSPLDA 313
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 114/253 (45%), Gaps = 13/253 (5%)
Query: 47 LFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR 106
+ +N L+ M+ C L A+ +F + +D +W +I GY + + + LF+ M R
Sbjct: 365 VVMNALVDMYAKCKALSDAKGIFGRVLNKDVVTWNSLIAGYAENDMGSDALMLFSHM--R 422
Query: 107 KKGHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
+G + P I +V L ACVC ++ +GK H K NI + +L+N Y K
Sbjct: 423 VQGSL----PDAISVVNALSACVCLGDLLIGKCFHTYAVKHAFMSNIYVNTALLNLYNKC 478
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
L A VFS++ NTV W A I +G + F EM ++ I+ N F+S+L
Sbjct: 479 ADLPSAQRVFSEMNDRNTVTWGAMIGGYGMQGDSAGSIDLFNEMLKDNIQPNEAVFTSIL 538
Query: 226 KAC---GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282
C G V C M A+ I Y C +VD+ + L +A + +
Sbjct: 539 STCSHTGMVTVGKKCFESM-AHYFNITPSMKHYA-C-MVDVLARAGNLEEALEFIQKMPM 595
Query: 283 KKNIASWNAMLVG 295
+ + + W A L G
Sbjct: 596 QADTSIWQAFLHG 608
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 96/216 (44%), Gaps = 8/216 (3%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
+L AC ++ + +H L G R + L++ Y L A V + +
Sbjct: 34 LLPACTTLPSL---RALHARLLAHGLLRGLRAHTKLLSCYAALGDLASARRVLDETPHPD 90
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGR--ERIKKNSYTFSSVLKACGGVDDDGNCGRQ 240
+ + + G + ++M R +++ S LKA D G GR+
Sbjct: 91 AYTYKVALGWHAAAGRHAEAVAVHRDMRRRCPAEQEDVVVLSLALKAAVRSADFGY-GRR 149
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
+H ++VK G D +V LVDMY K L++A +VF+ I D+ N+ SW +ML G ++NG
Sbjct: 150 LHCDVVKAG-GGDLFVMNNLVDMYAKGGDLKNARKVFDRIPDR-NVVSWTSMLSGCLQNG 207
Query: 301 LYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
L E M+ I E + + +AC+ + +
Sbjct: 208 LAKEGLVLFNEMRQESILPSEYTMASVLMACTMLGS 243
>gi|224077710|ref|XP_002305373.1| predicted protein [Populus trichocarpa]
gi|222848337|gb|EEE85884.1| predicted protein [Populus trichocarpa]
Length = 676
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 88/287 (30%), Positives = 142/287 (49%), Gaps = 12/287 (4%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L LN LL M+++CG+++ AR++FD M + SW MI GY + +F +M+
Sbjct: 157 LFVLNSLLAMYMNCGEVEEARKVFDAMKEKSVVSWNTMINGYFKNGFANTALVVFNQMVD 216
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
+ +V VL AC +E+G++VHGL+ + + I ++ +L++ Y K
Sbjct: 217 SG-----VEIDGASVVSVLPACGYLKELEVGRRVHGLVEEKVLGKKI-VSNALVDMYAKC 270
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
+++A VF + + V WT+ I G + FK M E ++ NS T + +L
Sbjct: 271 GSMDEARLVFDNMVERDVVSWTSMINGYILNGDAKSALSLFKIMQIEGLRPNSVTIALIL 330
Query: 226 KACGGVDD--DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
AC +++ DG C +H ++K L S+ V+ L+DMY KC L + VF K
Sbjct: 331 LACASLNNLKDGRC---LHGWVMKQRLYSEVAVETSLIDMYAKCNCLGLSFSVFTRTSRK 387
Query: 284 KNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIA 330
K + WNA+L G + N L EA M G++I + N L A
Sbjct: 388 KTV-PWNALLSGCVHNKLATEAIGLFKKMLMEGVEINAATCNSLLPA 433
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 83/284 (29%), Positives = 136/284 (47%), Gaps = 7/284 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ CG +D AR +FD M RD SW MI GY+ D + ++LF M
Sbjct: 261 NALVDMYAKCGSMDEARLVFDNMVERDVVSWTSMINGYILNGDAKSALSLFKIMQIEG-- 318
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
L + I +L AC N++ G+ +HG + K +++ SLI+ Y K CL
Sbjct: 319 ---LRPNSVTIALILLACASLNNLKDGRCLHGWVMKQRLYSEVAVETSLIDMYAKCNCLG 375
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
+ VF++ R TV W A + + FK+M E ++ N+ T +S+L A
Sbjct: 376 LSFSVFTRTSRKKTVPWNALLSGCVHNKLATEAIGLFKKMLMEGVEINAATCNSLLPAY- 434
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELI-VDKKNIAS 288
G+ D +++ +++ G S+ V L+D+Y KC L A ++F I VD ++I
Sbjct: 435 GILADLQPVNNINSYLMRSGFVSNIQVATSLIDIYSKCGSLESAHKIFNTIPVDVQDIFV 494
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
W+ ++ GY +G A M SG++ + + +CS
Sbjct: 495 WSIIIAGYGMHGHGETAVSLFKQMVQSGVKPNDVTFTSVLQSCS 538
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 91/335 (27%), Positives = 155/335 (46%), Gaps = 15/335 (4%)
Query: 4 LCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLN---RLLLMHVSCG 60
L L T Y L+K + +L H+ I LL ++ L+ + CG
Sbjct: 15 LLLAPKTTQYQSLLKHYGAAQSLTSTKQLHAHL-----ITSGLLSIDIRSVLVATYAHCG 69
Query: 61 QLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWII 120
+ AR+LFDE+ R + MI Y+ DY E + +F EM+ K +
Sbjct: 70 YVHNARKLFDELRQRGTLLYNFMIKMYIAKGDYFEAMKVFLEMLGSKD----CCPDNYTY 125
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
V+KAC + +E G+ +HGL ++ + SL+ Y +E+A VF +K
Sbjct: 126 PFVIKACSELLLVEYGRVLHGLTLVSKFGSHLFVLNSLLAMYMNCGEVEEARKVFDAMKE 185
Query: 181 HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQ 240
+ V W I + G + F +M ++ + + SVL ACG + + GR+
Sbjct: 186 KSVVSWNTMINGYFKNGFANTALVVFNQMVDSGVEIDGASVVSVLPACGYLKEL-EVGRR 244
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
+H +V+ + + V LVDMY KC + +A VF+ +V+ +++ SW +M+ GYI NG
Sbjct: 245 VHG-LVEEKVLGKKIVSNALVDMYAKCGSMDEARLVFDNMVE-RDVVSWTSMINGYILNG 302
Query: 301 LYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
A +M+ G++ I + +AC+S++
Sbjct: 303 DAKSALSLFKIMQIEGLRPNSVTIALILLACASLN 337
>gi|2832657|emb|CAA16732.1| putative protein [Arabidopsis thaliana]
gi|7268645|emb|CAB78854.1| putative protein [Arabidopsis thaliana]
Length = 565
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 82/266 (30%), Positives = 132/266 (49%), Gaps = 7/266 (2%)
Query: 48 FLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRK 107
+ R+ M + G L AR++FD MP ++ +W MI GY+ E LF + +K
Sbjct: 100 LIKRIHAMALKLGDLVYARKVFDSMPEKNTVTWTAMIDGYLKYGLEDEAFALFEDYVK-- 157
Query: 108 KGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
H + + VC+L C ELG+QVHG + K+G N+ + SL+ FY +
Sbjct: 158 --HGIRFTNERMFVCLLNLCSRRAEFELGRQVHGNMVKVGVG-NLIVESSLVYFYAQCGE 214
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
L A F ++ + + WTA I R+GH + F M N +T S+LKA
Sbjct: 215 LTSALRAFDMMEEKDVISWTAVISACSRKGHGIKAIGMFIGMLNHWFLPNEFTVCSILKA 274
Query: 228 CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
C + GRQ+H+ +VK +++D +V L+DMY KC + D +VF+ + + +N
Sbjct: 275 CSE-EKALRFGRQVHSLVVKRMIKTDVFVGTSLMDMYAKCGEISDCRKVFDGMSN-RNTV 332
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMK 313
+W +++ + R G EA +MK
Sbjct: 333 TWTSIIAAHAREGFGEEAISLFRIMK 358
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 85/319 (26%), Positives = 145/319 (45%), Gaps = 41/319 (12%)
Query: 16 LIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLR 75
++K C+ +K ++ + + KR+ IK + L+ M+ CG++ R++FD M R
Sbjct: 271 ILKACSEEKALRFGRQVHSLVVKRM-IKTDVFVGTSLMDMYAKCGEISDCRKVFDGMSNR 329
Query: 76 DFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMEL 135
+ +W +I + +E I+LF +MKR+ H++ L
Sbjct: 330 NTVTWTSIIAAHAREGFGEEAISLF-RIMKRR--HLIA-------------------NNL 367
Query: 136 GKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCR 195
++H + K +N+ + +L+ Y K DA V QL + V WTA I
Sbjct: 368 TVELHAQIIKNSIEKNVYIGSTLVWLYCKCGESRDAFNVLQQLPSRDVVSWTAMISGCSS 427
Query: 196 EGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEY 255
GH + + KEM +E ++ N +T+SS LKAC + GR +H+ K S+ +
Sbjct: 428 LGHESEALDFLKEMIQEGVEPNPFTYSSALKACAN-SESLLIGRSIHSIAKKNHALSNVF 486
Query: 256 VQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKAS 315
V L+ I+ +KN+ SW AM++GY RNG EA K +Y M+A
Sbjct: 487 VGSALIH-----------------IMPEKNLVSWKAMIMGYARNGFCREALKLMYRMEAE 529
Query: 316 GIQIQESLINDLRIACSSI 334
G ++ + + + C I
Sbjct: 530 GFEVDDYIFATILSTCGDI 548
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 89/326 (27%), Positives = 145/326 (44%), Gaps = 34/326 (10%)
Query: 12 MYTCLIKECTFQKDSAGAFELLNHIRK---RVNIKPTLLFLNRLLLMHVSCGQLDTARQL 68
M+ CL+ C+ + + FEL + +V + L+ + L+ + CG+L +A +
Sbjct: 167 MFVCLLNLCSRRAE----FELGRQVHGNMVKVGVG-NLIVESSLVYFYAQCGELTSALRA 221
Query: 69 FDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVC-VLKAC 127
FD M +D SW +I + I +F M+ H L P VC +LKAC
Sbjct: 222 FDMMEEKDVISWTAVISACSRKGHGIKAIGMFIGMLN----HWFL--PNEFTVCSILKAC 275
Query: 128 VCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWT 187
+ G+QVH L+ K ++ + SL++ Y K + D VF + NTV WT
Sbjct: 276 SEEKALRFGRQVHSLVVKRMIKTDVFVGTSLMDMYAKCGEISDCRKVFDGMSNRNTVTWT 335
Query: 188 AKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVK 247
+ I + REG + + F+ M R + N+ T ++HA I+K
Sbjct: 336 SIIAAHAREGFGEEAISLFRIMKRRHLIANNLTV------------------ELHAQIIK 377
Query: 248 IGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATK 307
+E + Y+ LV +Y KC RDA V + + +++ SW AM+ G G EA
Sbjct: 378 NSIEKNVYIGSTLVWLYCKCGESRDAFNVLQQL-PSRDVVSWTAMISGCSSLGHESEALD 436
Query: 308 FLYLMKASGIQIQESLINDLRIACSS 333
FL M G++ + AC++
Sbjct: 437 FLKEMIQEGVEPNPFTYSSALKACAN 462
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 82/201 (40%), Gaps = 27/201 (13%)
Query: 34 NHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADY 93
N I K V I TL++L + CG+ A + ++P RD SW MI G +
Sbjct: 378 NSIEKNVYIGSTLVWL------YCKCGESRDAFNVLQQLPSRDVVSWTAMISGCSSLGHE 431
Query: 94 QECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNIS 153
E + EM++ + + LKAC + ++ +G+ +H + K + N+
Sbjct: 432 SEALDFLKEMIQEGVEPNPFTYSS-----ALKACANSESLLIGRSIHSIAKKNHALSNVF 486
Query: 154 LTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRER 213
+ +LI+ + N V W A I+ R G + M E
Sbjct: 487 VGSALIHI----------------MPEKNLVSWKAMIMGYARNGFCREALKLMYRMEAEG 530
Query: 214 IKKNSYTFSSVLKACGGVDDD 234
+ + Y F+++L CG ++ D
Sbjct: 531 FEVDDYIFATILSTCGDIELD 551
>gi|297824663|ref|XP_002880214.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297326053|gb|EFH56473.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 585
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 91/296 (30%), Positives = 147/296 (49%), Gaps = 12/296 (4%)
Query: 45 TLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYV--DVADYQECITLFAE 102
+L F N+LL + + D A +LFDEM +R+ +W ++I G + D F
Sbjct: 70 SLFFQNKLLQAYTKIREFDDADKLFDEMLVRNIVTWNILIHGVIHRDGDTNHRAHLGFCY 129
Query: 103 MMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFY 162
+ + ++L ++I +++ C + N+E G Q+H L+ K G N L+ SL++FY
Sbjct: 130 LSRSLLSEVILDHVSFI--GLIRLCTDSTNVEAGNQLHSLIVKQGLESNCFLSTSLVDFY 187
Query: 163 GKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRER--IKKNSYT 220
GK + +A VF + + V+W A + + G + F K M E+ + +T
Sbjct: 188 GKCGLIGEARQVFEAVLVRDLVLWNALVSSYVLNGMIDEAFGLLKLMSSEKNGFTGDDFT 247
Query: 221 FSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELI 280
SS+L ACG G+Q+HA + K+ D V LV+MY K + DA + FE +
Sbjct: 248 LSSLLSACGIKQ-----GKQIHAIVFKLSYLFDIPVATALVNMYAKSNHMSDAHKCFESM 302
Query: 281 VDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
V +NI SWNAM+VG+ +NG EA + M +Q E + +C+ SA
Sbjct: 303 V-VRNIVSWNAMIVGFGQNGEGREAMRLFGQMLRENLQPDELTFASVLCSCTKFSA 357
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 75/300 (25%), Positives = 129/300 (43%), Gaps = 10/300 (3%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
+ LI+ CT + +L + I K+ ++ L+ + CG + ARQ+F+ +
Sbjct: 145 FIGLIRLCTDSTNVEAGNQLHSLIVKQ-GLESNCFLSTSLVDFYGKCGLIGEARQVFEAV 203
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN 132
+RD W ++ YV E L M K G + + +L AC
Sbjct: 204 LVRDLVLWNALVSSYVLNGMIDEAFGLLKLMSSEKNG---FTGDDFTLSSLLSAC----G 256
Query: 133 MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192
++ GKQ+H ++FKL +I + +L+N Y K + DA F + N V W A IV
Sbjct: 257 IKQGKQIHAIVFKLSYLFDIPVATALVNMYAKSNHMSDAHKCFESMVVRNIVSWNAMIVG 316
Query: 193 NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLES 252
+ G + F +M RE ++ + TF+SVL +C +Q+ A + K G
Sbjct: 317 FGQNGEGREAMRLFGQMLRENLQPDELTFASVLCSCTKFSAIWEI-KQVQAMVTKKGSAE 375
Query: 253 DEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLM 312
V L+ Y + L +A F I + ++ SW +++ +G E+ + M
Sbjct: 376 FLSVANSLISSYSRTGNLSEALLCFHSI-REPDLVSWTSVIGALASHGFAEESLRIFESM 434
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 105/204 (51%), Gaps = 13/204 (6%)
Query: 137 KQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNC-R 195
KQ HG + K G+ ++ L+ Y K R +DAD +F ++ N V W I R
Sbjct: 56 KQKHGFMVKQGTYNSLFFQNKLLQAYTKIREFDDADKLFDEMLVRNIVTWNILIHGVIHR 115
Query: 196 EGHF-HQVFNDFKEMGRERIKK---NSYTFSSVLKACGGVDDDGN--CGRQMHANIVKIG 249
+G H+ F + R + + + +F +++ C D N G Q+H+ IVK G
Sbjct: 116 DGDTNHRAHLGFCYLSRSLLSEVILDHVSFIGLIRLC---TDSTNVEAGNQLHSLIVKQG 172
Query: 250 LESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFL 309
LES+ ++ LVD YGKC L+ +A +VFE ++ +++ WNA++ Y+ NG+ EA L
Sbjct: 173 LESNCFLSTSLVDFYGKCGLIGEARQVFEAVL-VRDLVLWNALVSSYVLNGMIDEAFGLL 231
Query: 310 YLMKA--SGIQIQESLINDLRIAC 331
LM + +G + ++ L AC
Sbjct: 232 KLMSSEKNGFTGDDFTLSSLLSAC 255
>gi|225432410|ref|XP_002276935.1| PREDICTED: pentatricopeptide repeat-containing protein At2g36980,
mitochondrial-like [Vitis vinifera]
Length = 623
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 88/312 (28%), Positives = 138/312 (44%), Gaps = 38/312 (12%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL + S G D AR +FD MP + +W +MI GY D + C+ LF +M +
Sbjct: 143 LLFAYTSSGLFDVARVVFDGMPKKVEIAWNIMISGYGQCGDVELCLGLFKKMREDS---- 198
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED- 170
L W ++ A G +HG + K G + + ++ S+++FY K C +D
Sbjct: 199 -LQPDQWTFSALVNALCELQEPSYGYMMHGFIIKSGWVKAVEVSNSILSFYSKLGCKDDV 257
Query: 171 ------------------------------ADFVFSQLKRHNTVVWTAKIVNNCREGHFH 200
A VF N V WT+ I R GH
Sbjct: 258 MKVFESIGILTQVSWNAMIDAHMKIGDTHEAFLVFQLAPEKNVVSWTSMITGYARNGHGE 317
Query: 201 QVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGL 260
Q + F +M I+ + +TF +VL AC + G+ G+ +H +I+ G + V GL
Sbjct: 318 QALSFFVKMMENHIQPDDFTFGAVLHACSSLATLGH-GKMIHGSIIHYGFHAYVDVGNGL 376
Query: 261 VDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQ 320
V+MY KC ++ + F+ I+ K++ SWNAML G +G +A + M ASG++
Sbjct: 377 VNMYAKCGDIQGSNTAFKEILG-KDLVSWNAMLFGLGMHGHATQALELYEEMVASGMKPD 435
Query: 321 ESLINDLRIACS 332
+ L + CS
Sbjct: 436 KVTFIGLLMTCS 447
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 81/337 (24%), Positives = 131/337 (38%), Gaps = 67/337 (19%)
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI 119
G++ +AR+LFDEMP +D +W M+ Y + +Q+ + LF M F A
Sbjct: 19 GRITSARRLFDEMPHKDTVAWNAMLASYSQLGLHQQALCLFHHMRIANSRPDRFTFTA-- 76
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
L AC + G ++H + G ++ + SLI+ YGK A VF ++
Sbjct: 77 ---TLSACAGLGELRRGMKIHAQVVVSGCQSSLPVGNSLIDMYGKCLSATSARRVFEEMS 133
Query: 180 RHNTVVWTAKIVNNCREGHF---HQVFND----------------------------FKE 208
N V W + + G F VF+ FK+
Sbjct: 134 IMNEVSWCSLLFAYTSSGLFDVARVVFDGMPKKVEIAWNIMISGYGQCGDVELCLGLFKK 193
Query: 209 MGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCR 268
M + ++ + +TFS+++ A + + + G MH I+K G V ++ Y K
Sbjct: 194 MREDSLQPDQWTFSALVNALCELQEP-SYGYMMHGFIIKSGWVKAVEVSNSILSFYSKLG 252
Query: 269 LLRDAERVFELI------------------------------VDKKNIASWNAMLVGYIR 298
D +VFE I +KN+ SW +M+ GY R
Sbjct: 253 CKDDVMKVFESIGILTQVSWNAMIDAHMKIGDTHEAFLVFQLAPEKNVVSWTSMITGYAR 312
Query: 299 NGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
NG +A F M + IQ + + ACSS++
Sbjct: 313 NGHGEQALSFFVKMMENHIQPDDFTFGAVLHACSSLA 349
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 99/231 (42%), Gaps = 9/231 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N ++ H+ G A +F P ++ SW MI GY ++ ++ F +MM+
Sbjct: 273 NAMIDAHMKIGDTHEAFLVFQLAPEKNVVSWTSMITGYARNGHGEQALSFFVKMMENHIQ 332
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
F A VL AC + GK +HG + G + + L+N Y K ++
Sbjct: 333 PDDFTFGA-----VLHACSSLATLGHGKMIHGSIIHYGFHAYVDVGNGLVNMYAKCGDIQ 387
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC- 228
++ F ++ + V W A + GH Q ++EM +K + TF +L C
Sbjct: 388 GSNTAFKEILGKDLVSWNAMLFGLGMHGHATQALELYEEMVASGMKPDKVTFIGLLMTCS 447
Query: 229 -GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE 278
G+ + G + ++ + E+ E+V C +VD+ G+ L A + +
Sbjct: 448 HSGLIEKGQALFESMVSVYGLSQET-EHVVC-MVDLLGRGGYLAQARELVD 496
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 71/148 (47%), Gaps = 2/148 (1%)
Query: 155 TGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERI 214
T S I K + A +F ++ +TV W A + + + G Q F M
Sbjct: 8 TTSKIVALAKLGRITSARRLFDEMPHKDTVAWNAMLASYSQLGLHQQALCLFHHMRIANS 67
Query: 215 KKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAE 274
+ + +TF++ L AC G+ + G ++HA +V G +S V L+DMYGKC A
Sbjct: 68 RPDRFTFTATLSACAGLGELRR-GMKIHAQVVVSGCQSSLPVGNSLIDMYGKCLSATSAR 126
Query: 275 RVFELIVDKKNIASWNAMLVGYIRNGLY 302
RVFE + N SW ++L Y +GL+
Sbjct: 127 RVFEEM-SIMNEVSWCSLLFAYTSSGLF 153
>gi|356509847|ref|XP_003523656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
[Glycine max]
Length = 1611
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 81/273 (29%), Positives = 138/273 (50%), Gaps = 7/273 (2%)
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI 119
G+++ A LF D SW ++ GY+ D+ + + L+ M + + +
Sbjct: 1086 GKMEEAEFLFVNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQESGERSDQIT----- 1140
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
+V KA + ++ GKQ+H ++ K G + ++ +T +++ Y K +E A VFS++
Sbjct: 1141 LVNAAKAAGGLVGLKQGKQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEMESARRVFSEIP 1200
Query: 180 RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGR 239
+ V WT I G + +M +++ + YTF++++KAC + GR
Sbjct: 1201 SPDDVAWTTMISGCVENGQEEHALFTYHQMRLSKVQPDEYTFATLVKACSLLTALEQ-GR 1259
Query: 240 QMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRN 299
Q+HANIVK+ D +V LVDMY KC + DA +F+ + + IASWNAM+VG ++
Sbjct: 1260 QIHANIVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKR-TNTRRIASWNAMIVGLAQH 1318
Query: 300 GLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
G EA +F MK+ G+ + ACS
Sbjct: 1319 GNAKEALQFFKYMKSRGVMPDRVTFIGVLSACS 1351
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 82/289 (28%), Positives = 133/289 (46%), Gaps = 10/289 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQEC-ITLFAEMMKRKK 108
N L+ M+V G + AR +F +M D SW MI G ++ +EC + +F +++
Sbjct: 974 NCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISG-CTLSGLEECSVGMFVHLLRDS- 1031
Query: 109 GHMLLVFPAWIIVCVLKACVC-TMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
L+ + + VL+AC L Q+H K G + ++ +LI+ Y K
Sbjct: 1032 ----LLPDQFTVASVLRACSSLEGGYYLATQIHACAMKAGVVLDSFVSTALIDVYSKRGK 1087
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
+E+A+F+F + W A + G F + + M + + T + KA
Sbjct: 1088 MEEAEFLFVNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQESGERSDQITLVNAAKA 1147
Query: 228 CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
GG+ G+Q+HA +VK G D +V G++DMY KC + A RVF I ++A
Sbjct: 1148 AGGLVGLKQ-GKQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEMESARRVFSEIPSPDDVA 1206
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
W M+ G + NG A + M+ S +Q E L ACS ++A
Sbjct: 1207 -WTTMISGCVENGQEEHALFTYHQMRLSKVQPDEYTFATLVKACSLLTA 1254
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 123/252 (48%), Gaps = 7/252 (2%)
Query: 80 WAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQV 139
W + ++ + E + F +M+ + L F + V C +ELGKQ+
Sbjct: 903 WNKALSRFLQRGEAWEAVDCFVDMINSRVACDGLTFVVMLTVVAGLNC-----LELGKQI 957
Query: 140 HGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHF 199
HG++ + G + +S+ LIN Y K + A VF Q+ + + W I G
Sbjct: 958 HGIVMRSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLE 1017
Query: 200 HQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCG 259
F + R+ + + +T +SVL+AC ++ Q+HA +K G+ D +V
Sbjct: 1018 ECSVGMFVHLLRDSLLPDQFTVASVLRACSSLEGGYYLATQIHACAMKAGVVLDSFVSTA 1077
Query: 260 LVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQI 319
L+D+Y K + +AE +F + D ++ASWNA++ GYI +G + +A + LM+ SG +
Sbjct: 1078 LIDVYSKRGKMEEAEFLF-VNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQESGERS 1136
Query: 320 -QESLINDLRIA 330
Q +L+N + A
Sbjct: 1137 DQITLVNAAKAA 1148
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 107/233 (45%), Gaps = 9/233 (3%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L + +L M++ CG++++AR++F E+P D +W MI G V+ + + + +M
Sbjct: 1173 LFVTSGVLDMYLKCGEMESARRVFSEIPSPDDVAWTTMISGCVENGQEEHALFTYHQMRL 1232
Query: 106 RKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
K V P + ++KAC +E G+Q+H + KL + + + SL++ Y K
Sbjct: 1233 SK------VQPDEYTFATLVKACSLLTALEQGRQIHANIVKLNCAFDPFVMTSLVDMYAK 1286
Query: 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
+EDA +F + W A IV + G+ + FK M + + TF V
Sbjct: 1287 CGNIEDARGLFKRTNTRRIASWNAMIVGLAQHGNAKEALQFFKYMKSRGVMPDRVTFIGV 1346
Query: 225 LKACGGVDDDGNCGRQMHANIVKIGLESD-EYVQCGLVDMYGKCRLLRDAERV 276
L AC ++ G+E + E+ C LVD + + +AE+V
Sbjct: 1347 LSACSHSGLVSEAYENFYSMQKNYGIEPEIEHYSC-LVDALSRAGRIEEAEKV 1398
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 90/202 (44%), Gaps = 7/202 (3%)
Query: 107 KKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166
+ H++ P +L+ + ++ LGK+ H + G + +T +LI Y K
Sbjct: 648 PRAHLIHSLPQ--CFSILRQAIAASDLSLGKRAHARILTSGHHPDRFVTNNLITMYAKCG 705
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHF---HQVFNDFKEMGRERIKKNSYTFSS 223
L A +F N + T + + H H F+ F+ + R + +T +
Sbjct: 706 SLSSARKLFDTTPDTNRDLVTWNAILSALAAHADKSHDGFHLFRLLRRSVVSTTRHTLAP 765
Query: 224 VLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
V K C + + +H VKIGL+ D +V LV++Y K L+R+A +F+ +
Sbjct: 766 VFKMCL-LSASPSASESLHGYAVKIGLQWDVFVAGALVNIYAKFGLIREARVLFDGMA-V 823
Query: 284 KNIASWNAMLVGYIRNGLYVEA 305
+++ WN M+ Y+ L EA
Sbjct: 824 RDVVLWNVMMKAYVDTCLEYEA 845
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 82/188 (43%), Gaps = 9/188 (4%)
Query: 44 PTLLFLNRLLLMHVSCGQLDTARQLFDEMPL--RDFNSWAVMIVGYVDVADYQECITLFA 101
P N L+ M+ CG L +AR+LFD P RD +W ++ AD
Sbjct: 689 PDRFVTNNLITMYAKCGSLSSARKLFDTTPDTNRDLVTWNAILSALAAHADKSHDGFHLF 748
Query: 102 EMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINF 161
+++R ++ + V K C+ + + + +HG K+G ++ + G+L+N
Sbjct: 749 RLLRRS----VVSTTRHTLAPVFKMCLLSASPSASESLHGYAVKIGLQWDVFVAGALVNI 804
Query: 162 YGKFRCLEDADFVFSQLKRHNTVVWTAKI---VNNCREGHFHQVFNDFKEMGRERIKKNS 218
Y KF + +A +F + + V+W + V+ C E +F++F G
Sbjct: 805 YAKFGLIREARVLFDGMAVRDVVLWNVMMKAYVDTCLEYEAMLLFSEFHRTGFRPDDVTL 864
Query: 219 YTFSSVLK 226
T S V+K
Sbjct: 865 RTLSRVVK 872
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 80/316 (25%), Positives = 134/316 (42%), Gaps = 48/316 (15%)
Query: 26 SAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIV 85
S A E L+ ++ ++ + L+ ++ G + AR LFD M +RD W VM+
Sbjct: 775 SPSASESLHGYAVKIGLQWDVFVAGALVNIYAKFGLIREARVLFDGMAVRDVVLWNVMMK 834
Query: 86 GYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACV-CTMNMELGKQVHGLLF 144
YVD E + LF+E H P + + L V C N+ KQ
Sbjct: 835 AYVDTCLEYEAMLLFSEF------HRTGFRPDDVTLRTLSRVVKCKKNILELKQFKAYAT 888
Query: 145 KLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFN 204
KL F +D + +VW + + G + +
Sbjct: 889 KL------------------FMYDDDGS---------DVIVWNKALSRFLQRGEAWEAVD 921
Query: 205 DFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC---GRQMHANIVKIGLESDEYVQCG-- 259
F +M R+ + TF +L G+ NC G+Q+H +++ GL D+ V G
Sbjct: 922 CFVDMINSRVACDGLTFVVMLTVVAGL----NCLELGKQIHGIVMRSGL--DQVVSVGNC 975
Query: 260 LVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGL-YVEATKFLYLMKASGIQ 318
L++MY K + A VF + ++ ++ SWN M+ G +GL F++L++ S +
Sbjct: 976 LINMYVKAGSVSRARSVFGQM-NEVDLISWNTMISGCTLSGLEECSVGMFVHLLRDSLLP 1034
Query: 319 IQESLINDLRIACSSI 334
Q ++ + LR ACSS+
Sbjct: 1035 DQFTVASVLR-ACSSL 1049
>gi|356540347|ref|XP_003538651.1| PREDICTED: pentatricopeptide repeat-containing protein At5g13270,
chloroplastic-like [Glycine max]
Length = 753
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 96/337 (28%), Positives = 159/337 (47%), Gaps = 13/337 (3%)
Query: 1 MDNLCLPITTDMYTCLIKEC-TFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSC 59
MD + I Y L K C T S G L H R + N +L M+ C
Sbjct: 71 MDIAGISINPRSYEYLFKMCGTLGALSDGK---LFHNRLQRMANSNKFIDNCILQMYCDC 127
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI 119
A + FD++ RD +SWA +I Y + E + LF M+ L + P +
Sbjct: 128 KSFTAAERFFDKIVDRDLSSWATIISAYTEEGRIDEAVGLFLRMLD------LGIIPNFS 181
Query: 120 IVCVLKACVCTMNM-ELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL 178
I L +M +LGKQ+H L ++ + +IS+ + N Y K L+ A+ +++
Sbjct: 182 IFSTLIMSFADPSMLDLGKQIHSQLIRIEFAADISIETLISNMYVKCGWLDGAEVATNKM 241
Query: 179 KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCG 238
R + V T +V + F +M E ++ + + FS +LKAC + D G
Sbjct: 242 TRKSAVACTGLMVGYTQAARNRDALLLFSKMISEGVELDGFVFSIILKACAAL-GDLYTG 300
Query: 239 RQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIR 298
+Q+H+ +K+GLES+ V LVD Y KC A + FE I + N SW+A++ GY +
Sbjct: 301 KQIHSYCIKLGLESEVSVGTPLVDFYVKCARFEAARQAFESI-HEPNDFSWSALIAGYCQ 359
Query: 299 NGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
+G + A + +++ G+ + + N++ ACS++S
Sbjct: 360 SGKFDRALEVFKTIRSKGVLLNSFIYNNIFQACSAVS 396
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 78/278 (28%), Positives = 135/278 (48%), Gaps = 7/278 (2%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+V CG LD A ++M + + ++VGY A ++ + LF++M+ +
Sbjct: 224 MYVKCGWLDGAEVATNKMTRKSAVACTGLMVGYTQAARNRDALLLFSKMISEG-----VE 278
Query: 115 FPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFV 174
++ +LKAC ++ GKQ+H KLG +S+ L++FY K E A
Sbjct: 279 LDGFVFSIILKACAALGDLYTGKQIHSYCIKLGLESEVSVGTPLVDFYVKCARFEAARQA 338
Query: 175 FSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDD 234
F + N W+A I C+ G F + FK + + + NS+ ++++ +AC V D
Sbjct: 339 FESIHEPNDFSWSALIAGYCQSGKFDRALEVFKTIRSKGVLLNSFIYNNIFQACSAV-SD 397
Query: 235 GNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLV 294
CG Q+HA+ +K GL + + ++ MY KC + A + F L +DK + +W A++
Sbjct: 398 LICGAQIHADAIKKGLVAYLSGESAMITMYSKCGKVDYAHQAF-LAIDKPDTVAWTAIIC 456
Query: 295 GYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+ +G EA + M+ SG++ L ACS
Sbjct: 457 AHAYHGKASEALRLFKEMQGSGVRPNVVTFIGLLNACS 494
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 111/246 (45%), Gaps = 9/246 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ +V C + + ARQ F+ + + SW+ +I GY + + +F + R KG +
Sbjct: 322 LVDFYVKCARFEAARQAFESIHEPNDFSWSALIAGYCQSGKFDRALEVFKTI--RSKGVL 379
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
L F I + +AC ++ G Q+H K G +S ++I Y K ++ A
Sbjct: 380 LNSF---IYNNIFQACSAVSDLICGAQIHADAIKKGLVAYLSGESAMITMYSKCGKVDYA 436
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG-- 229
F + + +TV WTA I + G + FKEM ++ N TF +L AC
Sbjct: 437 HQAFLAIDKPDTVAWTAIICAHAYHGKASEALRLFKEMQGSGVRPNVVTFIGLLNACSHS 496
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
G+ +G + + D Y C ++D+Y + LL +A V + + ++ SW
Sbjct: 497 GLVKEGKQFLDSMTDKYGVNPTIDHY-NC-MIDIYSRAGLLLEALEVIRSMPFEPDVMSW 554
Query: 290 NAMLVG 295
++L G
Sbjct: 555 KSLLGG 560
>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
Length = 672
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 89/287 (31%), Positives = 145/287 (50%), Gaps = 17/287 (5%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ + S G ++ AR+LFDE+ ++D SW MI GYV+ +++E + L+ +MMK
Sbjct: 137 LITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKTN---- 192
Query: 112 LLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
V P +V V+ AC + ++ELG+Q+H + G NI + LI+ Y K +E
Sbjct: 193 --VKPDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVET 250
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC-- 228
A +F L + + + W I + + + F+EM R N T SVL AC
Sbjct: 251 ACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAH 310
Query: 229 -GGVDDDGNCGRQMHANIVK--IGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
G +D GR +H I K G+ + + L+DMY KC + A++VF+ ++ ++
Sbjct: 311 LGAID----IGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSML-TRS 365
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
++SWNAM+ G+ +G A M+ +GI + L ACS
Sbjct: 366 LSSWNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACS 412
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 78/312 (25%), Positives = 139/312 (44%), Gaps = 44/312 (14%)
Query: 62 LDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIV 121
L A +F+ + + W M G+ +D + L+ M+ + L+ ++
Sbjct: 15 LSYAISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMIS-----LGLLPNSYSFP 69
Query: 122 CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH 181
+LK+C + + G+Q+HG + KLG ++ + SLI+ Y + LEDA VF +
Sbjct: 70 FLLKSCAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHR 129
Query: 182 NTVVWTAKI--------VNNCRE------------------GH-----FHQVFNDFKEMG 210
+ V +TA I +NN R+ G+ F + +K+M
Sbjct: 130 HVVSYTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMM 189
Query: 211 RERIKKNSYTFSSVLKAC---GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKC 267
+ +K + T +V+ AC G ++ GRQ+H+ I G S+ + L+D+Y KC
Sbjct: 190 KTNVKPDESTMVTVVSACAQSGSIE----LGRQLHSWIEDHGFGSNIKIVNVLIDLYSKC 245
Query: 268 RLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDL 327
+ A +F+ + KK++ SWN ++ G+ LY EA M SG + + +
Sbjct: 246 GEVETACGLFQGLA-KKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSV 304
Query: 328 RIACSSISASKI 339
AC+ + A I
Sbjct: 305 LPACAHLGAIDI 316
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 120/250 (48%), Gaps = 13/250 (5%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
+N L+ ++ CG+++TA LF + +D SW +I G+ + Y+E + LF EM++ +
Sbjct: 235 VNVLIDLYSKCGEVETACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGE 294
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKL--GSSRNISLTGSLINFYGKFR 166
+ ++ VL AC +++G+ +H + K G + SL SLI+ Y K
Sbjct: 295 SPNDVT-----MLSVLPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCG 349
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
+E A VF + + W A I G + F+ F +M + I + TF +L
Sbjct: 350 DIEAAKQVFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLS 409
Query: 227 AC---GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
AC G +D + R M + KI + + Y C ++D+ G C L ++A+ + + +
Sbjct: 410 ACSHSGMLDLGRHIFRSMSQD-YKITPKLEHY-GC-MIDLLGHCGLFKEAKEMIRTMPME 466
Query: 284 KNIASWNAML 293
+ W ++L
Sbjct: 467 PDGVIWCSLL 476
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 82/198 (41%), Gaps = 31/198 (15%)
Query: 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
F L A +F ++ N ++W + + M + NSY+F +
Sbjct: 12 FDGLSYAISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPFL 71
Query: 225 LKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE------ 278
LK+C G+Q+H +++K+G + D YV L+ MY + L DA +VF+
Sbjct: 72 LKSCAKSKALIE-GQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRH 130
Query: 279 ------LI------------------VDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKA 314
LI + K++ SWNAM+ GY+ + EA + M
Sbjct: 131 VVSYTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMK 190
Query: 315 SGIQIQESLINDLRIACS 332
+ ++ ES + + AC+
Sbjct: 191 TNVKPDESTMVTVVSACA 208
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 96/233 (41%), Gaps = 51/233 (21%)
Query: 48 FLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRK 107
L L+ M+ CG ++ A+Q+FD M R +SW MI G+ LF++M RK
Sbjct: 337 LLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKM--RK 394
Query: 108 KGHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166
G + P I V +L AC + ++LG+ + FR
Sbjct: 395 NG----IDPDDITFVGLLSACSHSGMLDLGRHI-------------------------FR 425
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRE-RIKKNSYTFSSVL 225
+ + +L+ + ++ ++ +C +F + KEM R ++ + + S+L
Sbjct: 426 SMSQDYKITPKLEHYGCMI---DLLGHC------GLFKEAKEMIRTMPMEPDGVIWCSLL 476
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLE--------SDEYVQCGLVDMYGKCRLL 270
KAC + ++ G N++KI E S+ Y G D K R L
Sbjct: 477 KAC-KMHNNVELGESYAQNLIKIEPENPGSYVLLSNIYATAGRWDQVAKIRTL 528
>gi|218187045|gb|EEC69472.1| hypothetical protein OsI_38669 [Oryza sativa Indica Group]
Length = 1084
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 83/305 (27%), Positives = 145/305 (47%), Gaps = 8/305 (2%)
Query: 14 TCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMP 73
+ L+ C D +L +++ K + + LL ++V CG ++TA +F+
Sbjct: 248 SSLLAACASLGDLQKGTQLHSYLFK-AGMSSDYIMEGSLLDLYVKCGDVETALVIFNLGN 306
Query: 74 LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNM 133
+ W +++V + + D + LF +M +P C+L+ C CT +
Sbjct: 307 RTNVVLWNLILVAFGQINDLAKSFELFCQMQTAGIRPNQFTYP-----CILRTCTCTGEI 361
Query: 134 ELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNN 193
+LG+Q+H L K G ++ ++G LI+ Y K+ LE A V LK + V WT+ I
Sbjct: 362 DLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGY 421
Query: 194 CREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESD 253
+ + FKEM + I ++ +S + C G+ G Q+HA + G D
Sbjct: 422 VQHEYCKDALAAFKEMQKCGIWPDNIGLASAISGCAGIKAMRQ-GLQIHARVYVSGYSGD 480
Query: 254 EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMK 313
+ LV++Y +C +R+A FE I K I +WN ++ G+ ++GL+ EA K M
Sbjct: 481 VSIWNALVNLYARCGRIREAFSSFEEIEHKDEI-TWNGLVSGFAQSGLHEEALKVFMRMD 539
Query: 314 ASGIQ 318
SG++
Sbjct: 540 QSGVK 544
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 86/290 (29%), Positives = 140/290 (48%), Gaps = 13/290 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ +++ CG A ++F +MP RD ++ +I G+ A + + +F EM
Sbjct: 182 NALITLYLRCGSFRLAERVFYDMPHRDTVTFNTLISGHAQCAHGEHALEIFEEMQSSG-- 239
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
L I +L AC +++ G Q+H LFK G S + + GSL++ Y K +E
Sbjct: 240 ---LSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGMSSDYIMEGSLLDLYVKCGDVE 296
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC- 228
A +F+ R N V+W +V + + F F +M I+ N +T+ +L+ C
Sbjct: 297 TALVIFNLGNRTNVVLWNLILVAFGQINDLAKSFELFCQMQTAGIRPNQFTYPCILRTCT 356
Query: 229 --GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
G +D G Q+H+ VK G ESD YV L+DMY K L A RV E++ +K++
Sbjct: 357 CTGEID----LGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEML-KEKDV 411
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
SW +M+ GY+++ +A M+ GI + C+ I A
Sbjct: 412 VSWTSMIAGYVQHEYCKDALAAFKEMQKCGIWPDNIGLASAISGCAGIKA 461
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 79/321 (24%), Positives = 145/321 (45%), Gaps = 16/321 (4%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRK---RVNIKPTLLFLNRLLLMHVSCGQLDTARQLF 69
Y C+++ CT G +L I + + + L+ M+ G L+ AR++
Sbjct: 348 YPCILRTCT----CTGEIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVL 403
Query: 70 DEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI-IVCVLKACV 128
+ + +D SW MI GYV ++ + F EM K ++P I + + C
Sbjct: 404 EMLKEKDVVSWTSMIAGYVQHEYCKDALAAFKEMQK------CGIWPDNIGLASAISGCA 457
Query: 129 CTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTA 188
M G Q+H ++ G S ++S+ +L+N Y + + +A F +++ + + W
Sbjct: 458 GIKAMRQGLQIHARVYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNG 517
Query: 189 KIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKI 248
+ + G + F M + +K N +TF S L A + + G+Q+HA ++K
Sbjct: 518 LVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQ-GKQIHARVIKT 576
Query: 249 GLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKF 308
G + V L+ +YGKC DA+ F + ++N SWN ++ ++G +EA F
Sbjct: 577 GHSFETEVGNALISLYGKCGSFEDAKMEFSEM-SERNEVSWNTIITSCSQHGRGLEALDF 635
Query: 309 LYLMKASGIQIQESLINDLRI 329
MK G+ +S+ + I
Sbjct: 636 FDQMKKEGLSYFKSMSDKYGI 656
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/273 (27%), Positives = 128/273 (46%), Gaps = 15/273 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ ++ G + AR++F+E+ RD SW M+ GY +E + L+ +M
Sbjct: 81 NLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALWLYRQM------ 134
Query: 110 HMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFY---GKF 165
H V P +++ VL +C G+ VH +K G + +LI Y G F
Sbjct: 135 HRAGVVPTPYVLSSVLSSCTKAELFAQGRSVHAQGYKQGFCSETFVGNALITLYLRCGSF 194
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
R A+ VF + +TV + I + + H F+EM + + T SS+L
Sbjct: 195 RL---AERVFYDMPHRDTVTFNTLISGHAQCAHGEHALEIFEEMQSSGLSPDCVTISSLL 251
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
AC + D G Q+H+ + K G+ SD ++ L+D+Y KC + A +F L ++ N
Sbjct: 252 AACASLGDLQK-GTQLHSYLFKAGMSSDYIMEGSLLDLYVKCGDVETALVIFNL-GNRTN 309
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
+ WN +LV + + ++ + M+ +GI+
Sbjct: 310 VVLWNLILVAFGQINDLAKSFELFCQMQTAGIR 342
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/264 (24%), Positives = 117/264 (44%), Gaps = 8/264 (3%)
Query: 72 MPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCT- 130
M R S + G++ D + ++LFA+ ++ G L F C L+AC
Sbjct: 1 MTRRGAASLGWSLAGFLAQEDPAKVLSLFADKARQHGGLGPLDF-----ACALRACRGNG 55
Query: 131 MNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKI 190
++ ++H G ++ + LI+ Y K + A VF +L + V W A +
Sbjct: 56 RRWQVVPEIHAKAITRGLGKDRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAML 115
Query: 191 VNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGL 250
+ G + +++M R + Y SSVL +C + GR +HA K G
Sbjct: 116 SGYAQNGLGEEALWLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQ-GRSVHAQGYKQGF 174
Query: 251 ESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLY 310
S+ +V L+ +Y +C R AERVF + ++ ++N ++ G+ + A +
Sbjct: 175 CSETFVGNALITLYLRCGSFRLAERVF-YDMPHRDTVTFNTLISGHAQCAHGEHALEIFE 233
Query: 311 LMKASGIQIQESLINDLRIACSSI 334
M++SG+ I+ L AC+S+
Sbjct: 234 EMQSSGLSPDCVTISSLLAACASL 257
>gi|357167614|ref|XP_003581249.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300-like
[Brachypodium distachyon]
Length = 1430
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 93/326 (28%), Positives = 140/326 (42%), Gaps = 46/326 (14%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
+ + C +KDS ++ + K + K + + LL M+ C + AR++F+ M
Sbjct: 895 FASALSACAAEKDSRTGVQVHALVSKSPHAKDVYIG-SALLDMYAKCEWPEEARRVFEAM 953
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN 132
P R+ SW +I Y E + LF MMK V + V+ AC
Sbjct: 954 PERNIVSWNSLITCYEQNGPVGEALVLFVSMMKAG-----FVPDEVTLASVMSACAGLAA 1008
Query: 133 MELGKQVHGLL--------------------------------FKLGSSRNISLTGSLIN 160
G+QVH + F +SR++ SLI
Sbjct: 1009 DREGRQVHARVVKSDRFREDMVLSNALVDMYAKCGRTRAARCVFDRMASRSVVSETSLIT 1068
Query: 161 FYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYT 220
Y + +EDA VFSQ+ N + W I + G + F + RE + YT
Sbjct: 1069 GYARSANVEDAQMVFSQMVEKNVIAWNVLIAAYAQNGEEEEALRLFVRLKRESVWPTHYT 1128
Query: 221 FSSVLKACGGVDDDGNCGRQMHANIVK------IGLESDEYVQCGLVDMYGKCRLLRDAE 274
+ +VL ACG V D G+Q H +++K G ESD +V LVDMY K + D
Sbjct: 1129 YGNVLNACGNVADL-QLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGA 1187
Query: 275 RVFELIVDKKNIASWNAMLVGYIRNG 300
+VFE + + N+ SWNAM+VG+ +NG
Sbjct: 1188 KVFERMAARDNV-SWNAMIVGHAQNG 1212
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 95/365 (26%), Positives = 149/365 (40%), Gaps = 54/365 (14%)
Query: 12 MYTCLIKECTFQKDSAGAFELLNHIRKRVNIK-------PTLLFLNRLLLMHVSCGQLDT 64
+Y L++ T + A + H+ + PT LF NR + +CG +
Sbjct: 45 LYASLLRLATSHGSLSAARRIATHLAASSSASSTSRSSVPTFLF-NRAIESLAACGSVAD 103
Query: 65 ARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPA-WIIVCV 123
AR+LFD MPLRD SW +I E ++LF+ M + L + P + V
Sbjct: 104 ARELFDLMPLRDGGSWNAIITASSRAGHPSEALSLFSNM------NSLGIRPKDATMASV 157
Query: 124 LKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNT 183
L C +++ +Q+HG + K N+ L +L++ YG L DA F + N
Sbjct: 158 LSCCAECLDLCGARQLHGHIAKRDFQSNVILGTALVDVYGNCFLLADARRAFDDILEPNA 217
Query: 184 VVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC---GRQ 240
+ W + G + F M ++ YT S + AC D N GR
Sbjct: 218 ISWNVIVRRYHLAGMGDMAVDMFFRMLSAGVRPLGYTVSHAVLAC----RDNNALEEGRC 273
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLL------------------------------ 270
+HA +++ G E +V+ +VDMY KC +
Sbjct: 274 IHAFVLRHGYEHHVHVRSSVVDMYAKCGAMDAAQSLFNLAPMKDMVMSTSIVSGLASCGR 333
Query: 271 -RDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRI 329
DA+RVFE + ++N+ SWNAML GYIR+ A M+ + + +
Sbjct: 334 IADAKRVFEGM-KERNLVSWNAMLTGYIRSMDLTGALLLFQQMRQETREFDAITLGSVLS 392
Query: 330 ACSSI 334
AC+ I
Sbjct: 393 ACTGI 397
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 73/264 (27%), Positives = 121/264 (45%), Gaps = 10/264 (3%)
Query: 57 VSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP 116
SCG++ A+++F+ M R+ SW M+ GY+ D + LF +M + + F
Sbjct: 329 ASCGRIADAKRVFEGMKERNLVSWNAMLTGYIRSMDLTGALLLFQQMRQETRE-----FD 383
Query: 117 AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDAD--FV 174
A + VL AC +++ G++VH K G + L +L+ Y K CL A+ +
Sbjct: 384 AITLGSVLSACTGILDIGKGEEVHAFAIKCGFFSSPILKNALVRMYSKCGCLRSAERLLL 443
Query: 175 FSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDD 234
F ++ W + I R +M E + N TFSS L AC +
Sbjct: 444 FEMGSERDSYSWNSLISGYERHSMSEAALYALTKMQSE-VTPNQSTFSSALAACANIFLL 502
Query: 235 GNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLV 294
G Q+HA +++ G E D+ ++ L+DMY KCR + R+FE +++ WN+M+
Sbjct: 503 KQ-GMQIHAYMIRKGYEIDDILRSVLIDMYCKCRQFDYSIRIFE-ARPSRDVILWNSMIF 560
Query: 295 GYIRNGLYVEATKFLYLMKASGIQ 318
G +G M+ GI+
Sbjct: 561 GCAYSGKGEYGLDLFDEMQKQGIK 584
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 81/324 (25%), Positives = 128/324 (39%), Gaps = 39/324 (12%)
Query: 44 PTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEM 103
P N LL H G+ AR LF +P D S+ +I + + + A M
Sbjct: 824 PNTFSYNALLSAHARLGRPADARALFHAIPDPDQCSYNAVIAALAQHSRGADALLFLAAM 883
Query: 104 MKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYG 163
V A+ L AC + G QVH L+ K ++++ + +L++ Y
Sbjct: 884 HADD-----FVLNAYSFASALSACAAEKDSRTGVQVHALVSKSPHAKDVYIGSALLDMYA 938
Query: 164 KFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSS 223
K E+A VF + N V W + I + G + F M + + T +S
Sbjct: 939 KCEWPEEARRVFEAMPERNIVSWNSLITCYEQNGPVGEALVLFVSMMKAGFVPDEVTLAS 998
Query: 224 VLKACGGVDDDGNCGRQMHANIVKIG-LESDEYVQCGLVDMYGKCRLLR----------- 271
V+ AC G+ D GRQ+HA +VK D + LVDMY KC R
Sbjct: 999 VMSACAGLAADRE-GRQVHARVVKSDRFREDMVLSNALVDMYAKCGRTRAARCVFDRMAS 1057
Query: 272 --------------------DAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYL 311
DA+ VF +V+K N+ +WN ++ Y +NG EA +
Sbjct: 1058 RSVVSETSLITGYARSANVEDAQMVFSQMVEK-NVIAWNVLIAAYAQNGEEEEALRLFVR 1116
Query: 312 MKASGIQIQESLINDLRIACSSIS 335
+K + ++ AC +++
Sbjct: 1117 LKRESVWPTHYTYGNVLNACGNVA 1140
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 93/216 (43%), Gaps = 33/216 (15%)
Query: 154 LTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGH-------FHQVFND- 205
L +L++ Y + L DA VF ++ NT + A + + R G FH + +
Sbjct: 797 LLNTLVSAYARLGRLPDARRVFDEIPHPNTFSYNALLSAHARLGRPADARALFHAIPDPD 856
Query: 206 -----------------------FKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
M + N+Y+F+S L AC + D G Q+H
Sbjct: 857 QCSYNAVIAALAQHSRGADALLFLAAMHADDFVLNAYSFASALSACAA-EKDSRTGVQVH 915
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
A + K D Y+ L+DMY KC +A RVFE + ++NI SWN+++ Y +NG
Sbjct: 916 ALVSKSPHAKDVYIGSALLDMYAKCEWPEEARRVFEAM-PERNIVSWNSLITCYEQNGPV 974
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIACSSISASK 338
EA M +G E + + AC+ ++A +
Sbjct: 975 GEALVLFVSMMKAGFVPDEVTLASVMSACAGLAADR 1010
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 67/291 (23%), Positives = 129/291 (44%), Gaps = 38/291 (13%)
Query: 38 KRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECI 97
K + ++ N L+ M+ CG+ AR +FD M R S +I GY A+ ++
Sbjct: 1021 KSDRFREDMVLSNALVDMYAKCGRTRAARCVFDRMASRSVVSETSLITGYARSANVEDAQ 1080
Query: 98 TLFAEMMKRK--KGHMLL-----------------------VFPA-WIIVCVLKACVCTM 131
+F++M+++ ++L+ V+P + VL AC
Sbjct: 1081 MVFSQMVEKNVIAWNVLIAAYAQNGEEEEALRLFVRLKRESVWPTHYTYGNVLNACGNVA 1140
Query: 132 NMELGKQVH------GLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVV 185
+++LG+Q H G F G ++ + SL++ Y K ++D VF ++ + V
Sbjct: 1141 DLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVS 1200
Query: 186 WTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG--GVDDDGNCGRQMHA 243
W A IV + + G + F+ M + +S T VL ACG G+ ++G R +
Sbjct: 1201 WNAMIVGHAQNGRAKDALHLFERMLCSKESPDSVTMIGVLSACGHSGLVEEGR--RYFRS 1258
Query: 244 NIVKIG-LESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
G + S ++ C ++D+ G+ L++ E + + + + + W ++L
Sbjct: 1259 MTEDHGIIPSQDHYTC-MIDLLGRAGHLKEVEELIKEMSMEPDAVLWASLL 1308
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 75/181 (41%), Gaps = 8/181 (4%)
Query: 50 NRLLLMHVSCGQLDTARQL--FDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRK 107
N L+ M+ CG L +A +L F+ RD SW +I GY + + + +M
Sbjct: 423 NALVRMYSKCGCLRSAERLLLFEMGSERDSYSWNSLISGYERHSMSEAALYALTKMQSEV 482
Query: 108 KGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
+ A L AC ++ G Q+H + + G + L LI+ Y K R
Sbjct: 483 TPNQSTFSSA------LAACANIFLLKQGMQIHAYMIRKGYEIDDILRSVLIDMYCKCRQ 536
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
+ + +F + ++W + I G + F EM ++ IK +S TF L +
Sbjct: 537 FDYSIRIFEARPSRDVILWNSMIFGCAYSGKGEYGLDLFDEMQKQGIKADSVTFLGALVS 596
Query: 228 C 228
C
Sbjct: 597 C 597
Score = 45.1 bits (105), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 67/162 (41%), Gaps = 9/162 (5%)
Query: 36 IRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQE 95
IRK I L + L+ M+ C Q D + ++F+ P RD W MI G +
Sbjct: 513 IRKGYEIDDILRSV--LIDMYCKCRQFDYSIRIFEARPSRDVILWNSMIFGCAYSGKGEY 570
Query: 96 CITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLT 155
+ LF EM K+ + F + L +C+ ++ LG+ L+ I
Sbjct: 571 GLDLFDEMQKQGIKADSVTF-----LGALVSCISEGHVRLGRSYFTLMMDESIIPRIEHY 625
Query: 156 GSLINFYGKFRCL-EDADFVFSQLKRHNTVVWTAKIVNNCRE 196
+I GK C+ E DFV T +W +I + CRE
Sbjct: 626 ECMIELLGKHGCMVELEDFVEHMPFEPTTAMWL-RIFDCCRE 666
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 71/153 (46%), Gaps = 18/153 (11%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M++ G +D ++F+ M RD SW MIVG+ ++ + LF M+ K+
Sbjct: 1171 NSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGHAQNGRAKDALHLFERMLCSKES 1230
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQV-------HGLLFKLGSSRNISLTGSLINFY 162
+ ++ VL AC + +E G++ HG+ + S + + +I+
Sbjct: 1231 P-----DSVTMIGVLSACGHSGLVEEGRRYFRSMTEDHGI---IPSQDHYTC---MIDLL 1279
Query: 163 GKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCR 195
G+ L++ + + ++ V A ++ +CR
Sbjct: 1280 GRAGHLKEVEELIKEMSMEPDAVLWASLLGSCR 1312
>gi|449433319|ref|XP_004134445.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14850-like [Cucumis sativus]
Length = 606
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 86/265 (32%), Positives = 136/265 (51%), Gaps = 10/265 (3%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+ G L+ A ++FDEMP R+ +W I V ++ + F E++ R G
Sbjct: 152 MYSKLGFLNDAYKVFDEMPHRNLETWNAYISNSVLHGRPEDSVIAFIELL-RVGGK---- 206
Query: 115 FPAWIIVCV-LKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADF 173
P I C L AC + + G Q+HG + + G +N+S++ LI+FYGK +E ++
Sbjct: 207 -PDSITFCAFLNACSDKLGLGPGCQLHGFIIRSGYGQNVSVSNGLIDFYGKCGEVECSEM 265
Query: 174 VFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDD 233
VF ++ N+V W++ I + + F +E I+ + SSVL AC G+ +
Sbjct: 266 VFDRMGERNSVSWSSLIAAYVQNNEEEKASCLFLRARKEDIEPTDFMVSSVLCACAGLSE 325
Query: 234 DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
GR + A VK +E + +V LVDMYGKC + +AE+ F + ++N+ SWNA+L
Sbjct: 326 I-EFGRSVQALAVKACVEQNIFVASALVDMYGKCGSIDNAEQAFNAM-PERNLVSWNALL 383
Query: 294 VGYIRNGLYVEATKFLYLM-KASGI 317
GY G +A L M A+GI
Sbjct: 384 GGYAHQGHANKAVALLEEMTSAAGI 408
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/293 (27%), Positives = 136/293 (46%), Gaps = 10/293 (3%)
Query: 44 PTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEM 103
P L+ N L+ M+ L++A+ + + P R +W +I G V + + F++M
Sbjct: 41 PAFLY-NHLVNMYAKLDHLNSAKLILELAPCRSVVTWTALIAGSVQNGCFVSALLHFSDM 99
Query: 104 MKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYG 163
+ FP CVLKA GKQ+H L K G ++ + S+ + Y
Sbjct: 100 LSDCVRPNDFTFP-----CVLKASTGLRMDTTGKQLHALAVKEGLINDVFVGCSVFDMYS 154
Query: 164 KFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSS 223
K L DA VF ++ N W A I N+ G F E+ R K +S TF +
Sbjct: 155 KLGFLNDAYKVFDEMPHRNLETWNAYISNSVLHGRPEDSVIAFIELLRVGGKPDSITFCA 214
Query: 224 VLKACGGVDDDG-NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282
L AC D G G Q+H I++ G + V GL+D YGKC + +E VF+ +
Sbjct: 215 FLNACS--DKLGLGPGCQLHGFIIRSGYGQNVSVSNGLIDFYGKCGEVECSEMVFDRM-G 271
Query: 283 KKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
++N SW++++ Y++N +A+ + I+ + +++ + AC+ +S
Sbjct: 272 ERNSVSWSSLIAAYVQNNEEEKASCLFLRARKEDIEPTDFMVSSVLCACAGLS 324
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/247 (24%), Positives = 110/247 (44%), Gaps = 10/247 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ + CG+++ + +FD M R+ SW+ +I YV + ++ LF K
Sbjct: 248 NGLIDFYGKCGEVECSEMVFDRMGERNSVSWSSLIAAYVQNNEEEKASCLFLRARKED-- 305
Query: 110 HMLLVFPA-WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+ P +++ VL AC +E G+ V L K +NI + +L++ YGK +
Sbjct: 306 ----IEPTDFMVSSVLCACAGLSEIEFGRSVQALAVKACVEQNIFVASALVDMYGKCGSI 361
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSY-TFSSVLKA 227
++A+ F+ + N V W A + +GH ++ +EM SY + L A
Sbjct: 362 DNAEQAFNAMPERNLVSWNALLGGYAHQGHANKAVALLEEMTSAAGIVPSYVSLICALSA 421
Query: 228 CGGVDDDGNCGRQMHANIVKIGLES-DEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
C D + + + G+E E+ C LVD+ G+ ++ A + + I
Sbjct: 422 CSRAGDLKTGMKIFESMKERYGVEPGPEHYAC-LVDLLGRAGMVECAYDFIKRMPFPPTI 480
Query: 287 ASWNAML 293
+ W A+L
Sbjct: 481 SIWGALL 487
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 69/157 (43%), Gaps = 9/157 (5%)
Query: 42 IKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFA 101
++ + + L+ M+ CG +D A Q F+ MP R+ SW ++ GY + + L
Sbjct: 341 VEQNIFVASALVDMYGKCGSIDNAEQAFNAMPERNLVSWNALLGGYAHQGHANKAVALLE 400
Query: 102 EMMKRKKGHMLLVFPAWI-IVCVLKACVCTMNMELGKQV-HGLLFKLGSSRNISLTGSLI 159
EM + P+++ ++C L AC +++ G ++ + + G L+
Sbjct: 401 EMTSAAG-----IVPSYVSLICALSACSRAGDLKTGMKIFESMKERYGVEPGPEHYACLV 455
Query: 160 NFYGKFRCLEDA-DFVFSQLKRHNTVVWTAKIVNNCR 195
+ G+ +E A DF+ +W A ++ CR
Sbjct: 456 DLLGRAGMVECAYDFIKRMPFPPTISIWGA-LLGACR 491
>gi|449530628|ref|XP_004172296.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g21090-like [Cucumis sativus]
Length = 611
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 99/382 (25%), Positives = 165/382 (43%), Gaps = 58/382 (15%)
Query: 8 ITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQ 67
+ T ++ L++ C K G + H++ +PT + N L+ M+ CG+ AR+
Sbjct: 60 LPTGIFVDLLRLCAKAKYFKGGKCVHLHLKHTGFKRPTTIVANHLIGMYFECGRDVEARK 119
Query: 68 LFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR-------------KKG----- 109
+FD+M +R+ SW M+ GY + D LF MM++ K+G
Sbjct: 120 VFDKMSVRNLYSWNHMLAGYAKLGDVNNARKLFDRMMEKDVVSWNTIVLAYAKQGCFNEA 179
Query: 110 --------HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINF 161
+ + F A+ VL CV ++L KQVHG + G N+ L+ S+++
Sbjct: 180 IGLYRDFRRLDMGFNAFSFAGVLILCVKLKELQLAKQVHGQVLVAGFLSNLVLSSSIVDA 239
Query: 162 Y---GKFRC----------------------------LEDADFVFSQLKRHNTVVWTAKI 190
Y G+ RC + A +F Q+ N V W+A I
Sbjct: 240 YSKCGEMRCARTLFDEMLVKDIHAWTTIVSGYAKWGDMNSASELFHQMPEKNPVSWSALI 299
Query: 191 VNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGL 250
R H+ + F +M + I YTFSS L AC + + G+Q+H +++
Sbjct: 300 SGYARNSLGHEALDYFTKMMKFGINPEQYTFSSCLCACASIAALKH-GKQVHGYLIRTYF 358
Query: 251 ESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLY 310
+ V L+DMY KC +L + VF L+ +K+++ WN M+ +NG +A +
Sbjct: 359 RCNTIVVSSLIDMYSKCGMLEASCCVFHLMGNKQDVVVWNTMISALAQNGHGEKAMQMFN 418
Query: 311 LMKASGIQIQESLINDLRIACS 332
M SG++ + ACS
Sbjct: 419 DMVESGLKPDRITFIVILSACS 440
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 105/239 (43%), Gaps = 32/239 (13%)
Query: 131 MNMELGKQVHGL-LFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAK 189
M E G+ V +F S RN+ ++ Y K + +A +F ++ + V W
Sbjct: 107 MYFECGRDVEARKVFDKMSVRNLYSWNHMLAGYAKLGDVNNARKLFDRMMEKDVVSWNTI 166
Query: 190 IVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIG 249
++ ++G F++ +++ R + N+++F+ VL C + + +Q+H ++ G
Sbjct: 167 VLAYAKQGCFNEAIGLYRDFRRLDMGFNAFSFAGVLILCVKLKEL-QLAKQVHGQVLVAG 225
Query: 250 LESDEYVQCGLVDMYGKCRLLRDAERVF-ELIV--------------------------- 281
S+ + +VD Y KC +R A +F E++V
Sbjct: 226 FLSNLVLSSSIVDAYSKCGEMRCARTLFDEMLVKDIHAWTTIVSGYAKWGDMNSASELFH 285
Query: 282 --DKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASK 338
+KN SW+A++ GY RN L EA + M GI ++ + AC+SI+A K
Sbjct: 286 QMPEKNPVSWSALISGYARNSLGHEALDYFTKMMKFGINPEQYTFSSCLCACASIAALK 344
>gi|225444173|ref|XP_002268853.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21300-like [Vitis vinifera]
Length = 853
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 92/287 (32%), Positives = 140/287 (48%), Gaps = 7/287 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N LL M+ CG L AR+LFD MP D +W MI GYV E LF EM+ +
Sbjct: 287 NTLLAMYAKCGHLFDARRLFDMMPKTDLVTWNGMISGYVQNGFMDEASCLFHEMISARMK 346
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ F +++ + A + GK++H + + G S ++ L +LI+ Y K R +E
Sbjct: 347 PDSITFSSFLPLLSEGA-----TLRQGKEIHCYIIRNGVSLDVFLKSALIDIYFKCRDVE 401
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A +F Q + VV TA I G + F+ + +ER++ NS T +SVL AC
Sbjct: 402 MARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACA 461
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
G+ G+++H +I+K G YV ++DMY KC L A + F I DK + W
Sbjct: 462 GLAAL-TLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGISDKDAVC-W 519
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
N+M+ +NG EA M +G + I+ AC+++ A
Sbjct: 520 NSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPA 566
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 89/311 (28%), Positives = 145/311 (46%), Gaps = 13/311 (4%)
Query: 2 DNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQ 61
D+L + + + TC Q A A L+N I + +LL M+V CG
Sbjct: 43 DSLAPQLVSILQTCTDPSGLSQGRQAHAQMLVN------GIGYNGILGTKLLGMYVLCGA 96
Query: 62 LDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIV 121
A+ +F ++ L W MI G+ + + + + +M+ FP
Sbjct: 97 FLDAKNIFYQLRLWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPY---- 152
Query: 122 CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH 181
V+KAC ++ LG+ VH + +G ++ + SLI FY + C+ DA ++F ++
Sbjct: 153 -VIKACGGLNSVALGRVVHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSK 211
Query: 182 NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQM 241
+ V+W + + G + F EM R NS TF+ VL C + N G Q+
Sbjct: 212 DGVLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCAS-EIMINFGSQL 270
Query: 242 HANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGL 301
H +V GLE D V L+ MY KC L DA R+F+++ K ++ +WN M+ GY++NG
Sbjct: 271 HGLVVSSGLEMDSPVANTLLAMYAKCGHLFDARRLFDMM-PKTDLVTWNGMISGYVQNGF 329
Query: 302 YVEATKFLYLM 312
EA+ + M
Sbjct: 330 MDEASCLFHEM 340
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/280 (27%), Positives = 131/280 (46%), Gaps = 13/280 (4%)
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI 119
G + AR LFD MP +D W VM+ GYV D+ +F EM + + + F
Sbjct: 196 GCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTF---- 251
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
CVL C + + G Q+HGL+ G + + +L+ Y K L DA +F +
Sbjct: 252 -ACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANTLLAMYAKCGHLFDARRLFDMMP 310
Query: 180 RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC-- 237
+ + V W I + G + F EM R+K +S TFSS L + +G
Sbjct: 311 KTDLVTWNGMISGYVQNGFMDEASCLFHEMISARMKPDSITFSSFLP----LLSEGATLR 366
Query: 238 -GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGY 296
G+++H I++ G+ D +++ L+D+Y KCR + A ++F+ +I AM+ GY
Sbjct: 367 QGKEIHCYIIRNGVSLDVFLKSALIDIYFKCRDVEMARKIFDQRT-PVDIVVCTAMISGY 425
Query: 297 IRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+ NG+ A + + ++ + + AC+ ++A
Sbjct: 426 VLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAA 465
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/284 (25%), Positives = 138/284 (48%), Gaps = 11/284 (3%)
Query: 36 IRKRVNIKPTLLFLNRLLL-MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQ 94
IR V++ +FL L+ ++ C ++ AR++FD+ D MI GYV
Sbjct: 376 IRNGVSLD---VFLKSALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNN 432
Query: 95 ECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISL 154
+ +F +++ + + + + VL AC + LGK++HG + K G + +
Sbjct: 433 NALEIFRWLLQER-----MRANSVTLASVLPACAGLAALTLGKELHGHILKNGHGGSCYV 487
Query: 155 TGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERI 214
++++ Y K L+ A F + + V W + I + + G + + F++MG
Sbjct: 488 GSAIMDMYAKCGRLDLAHQTFIGISDKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGT 547
Query: 215 KKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAE 274
K + + S+ L AC + + G+++HA +++ SD + + L+DMY KC L A
Sbjct: 548 KYDCVSISAALSACANLPAL-HYGKEIHAFMMRGAFRSDLFAESALIDMYSKCGNLDLAC 606
Query: 275 RVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
RVF+ +++KN SWN+++ Y +G ++ + M GIQ
Sbjct: 607 RVFD-TMEEKNEVSWNSIIAAYGNHGRLKDSLNLFHGMLGDGIQ 649
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 101/222 (45%), Gaps = 10/222 (4%)
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
+V +L+ C + G+Q H + G N L L+ Y DA +F QL+
Sbjct: 49 LVSILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLR 108
Query: 180 RHNTVVWTAKIVNNCREGHFH-QVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCG 238
+ W I G F + FK +G + + YTF V+KACGG++ G
Sbjct: 109 LWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTL-PDKYTFPYVIKACGGLNSVA-LG 166
Query: 239 RQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIR 298
R +H I +G E D +V L+ Y + + DA +F+ + K + WN ML GY++
Sbjct: 167 RVVHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVL-WNVMLNGYVK 225
Query: 299 NGLYVEATKFLYLMKASGIQIQESLINDLRIACS-SISASKI 339
NG + AT M+ + E+ N + AC S+ AS+I
Sbjct: 226 NGDWDNATGVFMEMRRT-----ETNPNSVTFACVLSVCASEI 262
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 60/245 (24%), Positives = 101/245 (41%), Gaps = 17/245 (6%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+ CG+LD A Q F + +D W MI +E I LF R+ G
Sbjct: 494 MYAKCGRLDLAHQTFIGISDKDAVCWNSMITSCSQNGKPEEAIDLF-----RQMGMAGTK 548
Query: 115 FPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFV 174
+ I L AC + GK++H + + ++ +LI+ Y K L+ A V
Sbjct: 549 YDCVSISAALSACANLPALHYGKEIHAFMMRGAFRSDLFAESALIDMYSKCGNLDLACRV 608
Query: 175 FSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG--GVD 232
F ++ N V W + I G N F M + I+ + TF +++ ACG G
Sbjct: 609 FDTMEEKNEVSWNSIIAAYGNHGRLKDSLNLFHGMLGDGIQPDHVTFLAIISACGHAGQV 668
Query: 233 DDG----NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
D+G C + + ++ E+ C +VD++G+ L +A + + +
Sbjct: 669 DEGIHYFRCMTEELGIMARM-----EHYAC-MVDLFGRAGRLNEAFGMINSMPFSPDAGV 722
Query: 289 WNAML 293
W +L
Sbjct: 723 WGTLL 727
>gi|298204424|emb|CBI16904.3| unnamed protein product [Vitis vinifera]
Length = 843
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 84/285 (29%), Positives = 141/285 (49%), Gaps = 12/285 (4%)
Query: 15 CLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL 74
CLI+ D AF++ + + +R + N +L + G + A++LFD MP
Sbjct: 82 CLIQMYIKCSDLEFAFKVFDGMPQRDTVS-----WNAMLFGYAGRGDIGVAQKLFDAMPE 136
Query: 75 RDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNME 134
RD SW +I GY+ D+++ I +F +M G M VF VLK+C +
Sbjct: 137 RDVVSWNSLISGYLHNGDHRKVIDVFLQM-----GRMGTVFDRTTFAVVLKSCSSLEDHG 191
Query: 135 LGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNC 194
G Q+HGL K+G ++ +L++ Y K + L+ + F + N V W+A I
Sbjct: 192 GGIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFFHSMPEKNWVSWSAIIAGCV 251
Query: 195 REGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDE 254
+ FKEM + + + TF+SV ++C G+ G Q+H + +K +D
Sbjct: 252 QNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGLSAL-RLGSQLHGHALKTDFGTDV 310
Query: 255 YVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRN 299
+ +DMY KC L DA+++F + + N+ S+NA++VGY R+
Sbjct: 311 VIGTATLDMYMKCNNLSDAQKLFNSLPN-HNLQSYNAIIVGYARS 354
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 69/282 (24%), Positives = 122/282 (43%), Gaps = 40/282 (14%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N +L M+ CG L A +F+EM RD SW +I + + ++ ++LF
Sbjct: 401 NAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLF--------- 451
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+H + K + + +LI+ Y K +E
Sbjct: 452 -----------------------------IHNRIIKSRLGLDSFVGIALIDMYSKCGMME 482
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A+ + +L V W A I + + F +M + +++T++++L C
Sbjct: 483 KAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCA 542
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ G+Q+HA I+K L+SD Y+ LVDMY KC ++D + +FE ++ +W
Sbjct: 543 NL-VTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEK-APNRDFVTW 600
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
NAM+ GY ++GL EA K M+ ++ + + AC
Sbjct: 601 NAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRAC 642
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 110/243 (45%), Gaps = 7/243 (2%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ CG ++ A +L D + + SW +I G+ +E F++M++ M
Sbjct: 471 LIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLE-----M 525
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+ + +L C + +ELGKQ+H + K + ++ +L++ Y K ++D
Sbjct: 526 GVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDF 585
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
+F + + V W A + + G + F+ M E +K N TF +VL+ACG +
Sbjct: 586 QLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHM 645
Query: 232 DDDGNCGRQMHANIVKIGLESD-EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWN 290
H+ + GL+ E+ C +VD+ G+ + A + E + + + W
Sbjct: 646 GLVEKGLHYFHSMLSNYGLDPQLEHYSC-VVDIMGRSGQVSKALELIEGMPFEADAVIWR 704
Query: 291 AML 293
+L
Sbjct: 705 TLL 707
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 64/265 (24%), Positives = 107/265 (40%), Gaps = 54/265 (20%)
Query: 53 LLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHML 112
L M++ C L A++LF+ +P + S+ +IVGY + KG
Sbjct: 317 LDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIVGYA----------------RSDKG--- 357
Query: 113 LVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDAD 172
L + +AC G QVHGL K NI + ++++ YGK L +A
Sbjct: 358 LGLDEVSLSGAFRACAVIKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEAC 417
Query: 173 FVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVD 232
VF ++ + V W A I + + G+ + + F
Sbjct: 418 LVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLF-------------------------- 451
Query: 233 DDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAM 292
+H I+K L D +V L+DMY KC ++ AE++ + + + + + SWNA+
Sbjct: 452 --------IHNRIIKSRLGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAE-QTVVSWNAI 502
Query: 293 LVGYIRNGLYVEATKFLYLMKASGI 317
+ G+ EA K M G+
Sbjct: 503 ISGFSLQKQSEEAQKTFSKMLEMGV 527
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 4/107 (3%)
Query: 220 TFSSVLKACGGVDDDGNC-GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE 278
TFS + + C D C G+Q HA ++ + +V L+ MY KC L A +VF+
Sbjct: 44 TFSHIFQECS--DRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLEFAFKVFD 101
Query: 279 LIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLIN 325
+ +++ SWNAML GY G A K M + SLI+
Sbjct: 102 GM-PQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPERDVVSWNSLIS 147
>gi|449438554|ref|XP_004137053.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g21090-like [Cucumis sativus]
Length = 611
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 99/382 (25%), Positives = 165/382 (43%), Gaps = 58/382 (15%)
Query: 8 ITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQ 67
+ T ++ L++ C K G + H++ +PT + N L+ M+ CG+ AR+
Sbjct: 60 LPTGIFVDLLRLCAKAKYFKGGKCVHLHLKHTGFKRPTTIVANHLIGMYFECGRDVEARK 119
Query: 68 LFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR-------------KKG----- 109
+FD+M +R+ SW M+ GY + D LF MM++ K+G
Sbjct: 120 VFDKMSVRNLYSWNHMLAGYAKLGDVNNARKLFDRMMEKDVVSWNTIVLAYAKQGCFNEA 179
Query: 110 --------HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINF 161
+ + F A+ VL CV ++L KQVHG + G N+ L+ S+++
Sbjct: 180 IGLYRDFRRLDMGFNAFSFAGVLILCVKLKELQLAKQVHGQVLVAGFLSNLVLSSSIVDA 239
Query: 162 Y---GKFRC----------------------------LEDADFVFSQLKRHNTVVWTAKI 190
Y G+ RC + A +F Q+ N V W+A I
Sbjct: 240 YAKCGEMRCARTLFDEMLVKDIHAWTTIVSGYAKWGDMNSASELFHQMPEKNPVSWSALI 299
Query: 191 VNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGL 250
R H+ + F +M + I YTFSS L AC + + G+Q+H +++
Sbjct: 300 SGYARNSLGHEALDYFTKMMKFGINPEQYTFSSCLCACASIAALKH-GKQVHGYLIRTYF 358
Query: 251 ESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLY 310
+ V L+DMY KC +L + VF L+ +K+++ WN M+ +NG +A +
Sbjct: 359 RCNTIVVSSLIDMYSKCGMLEASCCVFHLMGNKQDVVVWNTMISALAQNGHGEKAMQMFN 418
Query: 311 LMKASGIQIQESLINDLRIACS 332
M SG++ + ACS
Sbjct: 419 DMVESGLKPDRITFIVILSACS 440
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 105/239 (43%), Gaps = 32/239 (13%)
Query: 131 MNMELGKQVHGL-LFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAK 189
M E G+ V +F S RN+ ++ Y K + +A +F ++ + V W
Sbjct: 107 MYFECGRDVEARKVFDKMSVRNLYSWNHMLAGYAKLGDVNNARKLFDRMMEKDVVSWNTI 166
Query: 190 IVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIG 249
++ ++G F++ +++ R + N+++F+ VL C + + +Q+H ++ G
Sbjct: 167 VLAYAKQGCFNEAIGLYRDFRRLDMGFNAFSFAGVLILCVKLKEL-QLAKQVHGQVLVAG 225
Query: 250 LESDEYVQCGLVDMYGKCRLLRDAERVF-ELIV--------------------------- 281
S+ + +VD Y KC +R A +F E++V
Sbjct: 226 FLSNLVLSSSIVDAYAKCGEMRCARTLFDEMLVKDIHAWTTIVSGYAKWGDMNSASELFH 285
Query: 282 --DKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASK 338
+KN SW+A++ GY RN L EA + M GI ++ + AC+SI+A K
Sbjct: 286 QMPEKNPVSWSALISGYARNSLGHEALDYFTKMMKFGINPEQYTFSSCLCACASIAALK 344
>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
Length = 989
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 90/326 (27%), Positives = 150/326 (46%), Gaps = 16/326 (4%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLF----LNRLLLMHVSCGQLDTARQL 68
Y +++ CT S GA +L I +V IK F + L+ M+ G+LDTA +
Sbjct: 418 YPSILRTCT----SVGALDLGEQIHTQV-IKTGFQFNVYVCSVLIDMYAKHGKLDTAHVI 472
Query: 69 FDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACV 128
+ D SW +I GY + E + F EM+ R + F + I AC
Sbjct: 473 LRTLTEDDVVSWTALISGYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAI-----SACA 527
Query: 129 CTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTA 188
+ G+Q+H + G S ++S+ +L++ Y + +++A F ++ +++ W
Sbjct: 528 GIQALNQGRQIHAQSYVSGYSEDLSIGNALVSLYARCGRIKEAYLEFEKIDAKDSISWNG 587
Query: 189 KIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKI 248
I + G+ F +M R +++ + +TF S + A + + G+Q+HA I+K
Sbjct: 588 LISGFAQSGYCEDALKVFAQMNRAKLEASFFTFGSAVSAAANIANIKQ-GKQIHAMIIKR 646
Query: 249 GLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKF 308
G +SD V L+ Y KC + DA R F + +KN SWNAM+ GY ++G EA
Sbjct: 647 GFDSDIEVSNALITFYAKCGSIEDARREF-CEMPEKNDVSWNAMITGYSQHGYGNEAVNL 705
Query: 309 LYLMKASGIQIQESLINDLRIACSSI 334
MK G + ACS +
Sbjct: 706 FEKMKQVGEMPNHVTFVGVLSACSHV 731
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 80/289 (27%), Positives = 142/289 (49%), Gaps = 11/289 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ ++ G + +AR++FD + +D SW MI G+ +E I LF EM
Sbjct: 151 NPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMISGFSQNGYEEEAIHLFCEM------ 204
Query: 110 HMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
H +FP ++ VL C ++G+Q+H L+FK GSS + +L+ Y +
Sbjct: 205 HTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGSSLETYVCNALVTLYSRMPNF 264
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
A+ VFS+++ + V + + I ++G F +M R+ +K + T +S+L AC
Sbjct: 265 VSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLKPDCVTVASLLSAC 324
Query: 229 GGVDDDGNC-GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
+ C G Q+H+ ++K G+ SD V+ L+D+Y C ++ A +F L +N+
Sbjct: 325 A--SNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEMF-LTAQTENVV 381
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
WN MLV + + E+ + M+ G+ + + C+S+ A
Sbjct: 382 LWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGA 430
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 77/288 (26%), Positives = 134/288 (46%), Gaps = 7/288 (2%)
Query: 31 ELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDV 90
E L+ + I ++ LL ++V+C + TA ++F + W VM+V + +
Sbjct: 334 EQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEMFLTAQTENVVLWNVMLVAFGKL 393
Query: 91 ADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSR 150
+ E +F +M + +P+ +L+ C ++LG+Q+H + K G
Sbjct: 394 DNLSESFRIFRQMQIKGLIPNQFTYPS-----ILRTCTSVGALDLGEQIHTQVIKTGFQF 448
Query: 151 NISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMG 210
N+ + LI+ Y K L+ A + L + V WTA I + F + FKEM
Sbjct: 449 NVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWTALISGYAQHNLFAEALKHFKEML 508
Query: 211 RERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLL 270
I+ ++ FSS + AC G+ N GRQ+HA G D + LV +Y +C +
Sbjct: 509 NRGIQSDNIGFSSAISACAGIQAL-NQGRQIHAQSYVSGYSEDLSIGNALVSLYARCGRI 567
Query: 271 RDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
++A FE I D K+ SWN ++ G+ ++G +A K M + ++
Sbjct: 568 KEAYLEFEKI-DAKDSISWNGLISGFAQSGYCEDALKVFAQMNRAKLE 614
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 71/287 (24%), Positives = 132/287 (45%), Gaps = 7/287 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ ++ +A ++F +M +D S+ +I G + LF +M +
Sbjct: 252 NALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRD--- 308
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
L + +L AC + G+Q+H + K G S ++ + G+L++ Y ++
Sbjct: 309 --YLKPDCVTVASLLSACASNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIK 366
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A +F + N V+W +V + + + F F++M + + N +T+ S+L+ C
Sbjct: 367 TAHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCT 426
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
V + G Q+H ++K G + + YV L+DMY K L A + + + ++ SW
Sbjct: 427 SVGAL-DLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTED-DVVSW 484
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
A++ GY ++ L+ EA K M GIQ + AC+ I A
Sbjct: 485 TALISGYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQA 531
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 76/288 (26%), Positives = 131/288 (45%), Gaps = 8/288 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N+L+ ++ + G LD ++F++MP R SW +I G+++ + LF+ M++
Sbjct: 49 NKLVDVYFALGDLDGVVKVFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVS 108
Query: 110 HMLLVFPAWIIVCVLKACVC-TMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+ F + VL+AC + + +Q+H + G + ++ LI Y K +
Sbjct: 109 PTEISFAS-----VLRACSGHRIGIRYAEQIHARIICHGLLCSPIISNPLIGLYAKNGLI 163
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
A VF L ++V W A I + G+ + + F EM I Y FSSVL C
Sbjct: 164 ISARKVFDNLCTKDSVSWVAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGC 223
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
+ + G Q+HA + K G + YV LV +Y + AE+VF + K + S
Sbjct: 224 TKI-KLFDVGEQLHALVFKYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEV-S 281
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+N+++ G + G A + MK ++ + L AC+S A
Sbjct: 282 FNSLISGLAQQGFSDGALELFTKMKRDYLKPDCVTVASLLSACASNGA 329
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 96/214 (44%), Gaps = 1/214 (0%)
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
+ +L C+ + ++ K++HG + KLG L L++ Y L+ VF +
Sbjct: 14 IWLLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGDLDGVVKVFEDMPN 73
Query: 181 HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQ 240
+ W I + ++V + F M E + +F+SVL+AC G Q
Sbjct: 74 RSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRACSGHRIGIRYAEQ 133
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
+HA I+ GL + L+ +Y K L+ A +VF+ + K ++ SW AM+ G+ +NG
Sbjct: 134 IHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSV-SWVAMISGFSQNG 192
Query: 301 LYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
EA M +GI + + + C+ I
Sbjct: 193 YEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKI 226
>gi|15218851|ref|NP_171853.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75180299|sp|Q9LR69.1|PPR8_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g03540
gi|9280645|gb|AAF86514.1|AC002560_7 F21B7.16 [Arabidopsis thaliana]
gi|91805735|gb|ABE65596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332189463|gb|AEE27584.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 609
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 83/254 (32%), Positives = 129/254 (50%), Gaps = 10/254 (3%)
Query: 65 ARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVL 124
AR++FDEMP D W ++ + Y+E + LF M R KG LV VL
Sbjct: 217 ARRVFDEMPEPDVICWTAVLSAFSKNDLYEEALGLFY-AMHRGKG---LVPDGSTFGTVL 272
Query: 125 KACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTV 184
AC ++ GK++HG L G N+ + SL++ YGK + +A VF+ + + N+V
Sbjct: 273 TACGNLRRLKQGKEIHGKLITNGIGSNVVVESSLLDMYGKCGSVREARQVFNGMSKKNSV 332
Query: 185 VWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHAN 244
W+A + C+ G + F+EM +K+ Y F +VLKAC G+ G+++H
Sbjct: 333 SWSALLGGYCQNGEHEKAIEIFREME----EKDLYCFGTVLKACAGLAAV-RLGKEIHGQ 387
Query: 245 IVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVE 304
V+ G + V+ L+D+YGK + A RV+ + +N+ +WNAML +NG E
Sbjct: 388 YVRRGCFGNVIVESALIDLYGKSGCIDSASRVYSKM-SIRNMITWNAMLSALAQNGRGEE 446
Query: 305 ATKFLYLMKASGIQ 318
A F M GI+
Sbjct: 447 AVSFFNDMVKKGIK 460
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 88/342 (25%), Positives = 165/342 (48%), Gaps = 24/342 (7%)
Query: 6 LPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNR-----LLLMHVSCG 60
+P T +Y L++ C F ++ I+ ++ + L +R LL ++ G
Sbjct: 57 IPATPKLYASLLQTCN------KVFSFIHGIQFHAHVVKSGLETDRNVGNSLLSLYFKLG 110
Query: 61 Q-LDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI 119
+ R++FD ++D SW M+ GYV ++ + + +F EM+ L +
Sbjct: 111 PGMRETRRVFDGRFVKDAISWTSMMSGYVTGKEHVKALEVFVEMVS-----FGLDANEFT 165
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
+ +KAC + LG+ HG++ G N ++ +L YG R DA VF ++
Sbjct: 166 LSSAVKACSELGEVRLGRCFHGVVITHGFEWNHFISSTLAYLYGVNREPVDARRVFDEMP 225
Query: 180 RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRER-IKKNSYTFSSVLKACGGVDDDGNCG 238
+ + WTA + + + + F M R + + + TF +VL ACG + G
Sbjct: 226 EPDVICWTAVLSAFSKNDLYEEALGLFYAMHRGKGLVPDGSTFGTVLTACGNLRRLKQ-G 284
Query: 239 RQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIR 298
+++H ++ G+ S+ V+ L+DMYGKC +R+A +VF + KKN SW+A+L GY +
Sbjct: 285 KEIHGKLITNGIGSNVVVESSLLDMYGKCGSVREARQVFNGM-SKKNSVSWSALLGGYCQ 343
Query: 299 NGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKIN 340
NG + +A + M+ + +++ AC+ ++A ++
Sbjct: 344 NGEHEKAIEIFREMEEKDLYCFGTVLK----ACAGLAAVRLG 381
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 129/255 (50%), Gaps = 13/255 (5%)
Query: 41 NIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLF 100
I ++ + LL M+ CG + ARQ+F+ M ++ SW+ ++ GY ++++ I +F
Sbjct: 295 GIGSNVVVESSLLDMYGKCGSVREARQVFNGMSKKNSVSWSALLGGYCQNGEHEKAIEIF 354
Query: 101 AEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLIN 160
EM ++ L F VLKAC + LGK++HG + G N+ + +LI+
Sbjct: 355 REMEEKD----LYCFGT-----VLKACAGLAAVRLGKEIHGQYVRRGCFGNVIVESALID 405
Query: 161 FYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYT 220
YGK C++ A V+S++ N + W A + + G + + F +M ++ IK + +
Sbjct: 406 LYGKSGCIDSASRVYSKMSIRNMITWNAMLSALAQNGRGEEAVSFFNDMVKKGIKPDYIS 465
Query: 221 FSSVLKACG--GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE 278
F ++L ACG G+ D+G + A I ++ Y C ++D+ G+ L +AE + E
Sbjct: 466 FIAILTACGHTGMVDEGRNYFVLMAKSYGIKPGTEHY-SC-MIDLLGRAGLFEEAENLLE 523
Query: 279 LIVDKKNIASWNAML 293
+ + + W +L
Sbjct: 524 RAECRNDASLWGVLL 538
>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 809
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/282 (29%), Positives = 145/282 (51%), Gaps = 9/282 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ CG L+TARQLFD M R+ SW MI YV + +E + +F +M+
Sbjct: 277 LVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEG---- 332
Query: 112 LLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
V P + ++ L AC ++E G+ +H L +LG RN+S+ SLI+ Y K + ++
Sbjct: 333 --VKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDT 390
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
A +F +L+ V W A I+ + G N F +M +K +++T+ SV+ A
Sbjct: 391 AASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAE 450
Query: 231 VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWN 290
+ + + +H +++ L+ + +V LVDMY KC + A +F+++ ++++ +WN
Sbjct: 451 LSITHH-AKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMM-SERHVTTWN 508
Query: 291 AMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
AM+ GY +G A + M+ I+ + ACS
Sbjct: 509 AMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACS 550
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 72/288 (25%), Positives = 132/288 (45%), Gaps = 7/288 (2%)
Query: 47 LFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR 106
F +L+ + G +D A ++F+ + + + M+ G+ V+D + + F M
Sbjct: 70 FFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYD 129
Query: 107 KKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166
++ F +LK C + +GK++HGLL K G S ++ L N Y K R
Sbjct: 130 DVEPVVYNF-----TYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCR 184
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
+ +A VF ++ + V W + + G K M E +K + T SVL
Sbjct: 185 QVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLP 244
Query: 227 ACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
A + + G+++H ++ G +S + LVDMY KC L A ++F+ +++ +N+
Sbjct: 245 AVSALRLI-SVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLE-RNV 302
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
SWN+M+ Y++N EA M G++ + + AC+ +
Sbjct: 303 VSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADL 350
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/249 (26%), Positives = 107/249 (42%), Gaps = 13/249 (5%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
+N L+ M+ C ++DTA +F ++ R SW MI+G+ + + F++M R
Sbjct: 375 VNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRT- 433
Query: 109 GHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
V P + V V+ A K +HG++ + +N+ +T +L++ Y K
Sbjct: 434 -----VKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGA 488
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
+ A +F + + W A I G F+EM + IK N TF SV+ A
Sbjct: 489 IMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISA 548
Query: 228 C---GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
C G V+ C M N I L D Y +VD+ G+ L +A + K
Sbjct: 549 CSHSGLVEAGLKCFYMMKENY-SIELSMDHY--GAMVDLLGRAGRLNEAWDFIMQMPVKP 605
Query: 285 NIASWNAML 293
+ + AML
Sbjct: 606 AVNVYGAML 614
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 89/173 (51%), Gaps = 3/173 (1%)
Query: 129 CTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTA 188
C+ EL +Q+ L+FK G + L++ + ++ +++A VF + V++
Sbjct: 47 CSSLKEL-RQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHT 105
Query: 189 KIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKI 248
+ + + F M + ++ Y F+ +LK CG + + G+++H +VK
Sbjct: 106 MLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGD-EAELRVGKEIHGLLVKS 164
Query: 249 GLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGL 301
G D + GL +MY KCR + +A +VF+ + ++++ SWN ++ GY +NG+
Sbjct: 165 GFSLDLFAMTGLENMYAKCRQVNEARKVFDRM-PERDLVSWNTIVAGYSQNGM 216
>gi|356529924|ref|XP_003533536.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39680-like [Glycine max]
Length = 694
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 88/304 (28%), Positives = 146/304 (48%), Gaps = 9/304 (2%)
Query: 36 IRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQE 95
IR + + + LN L+ ++V CGQL AR LFD MPLR+ SW V++ GY+ ++ E
Sbjct: 40 IRNQTSNHSHISHLNSLVHLYVKCGQLGLARNLFDAMPLRNVVSWNVLMAGYLHGGNHLE 99
Query: 96 CITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLT 155
+ LF M+ + ++ L AC ++ G Q HGLLFK G + +
Sbjct: 100 VLVLFKNMVSLQNA----CPNEYVFTTALSACSHGGRVKEGMQCHGLLFKFGLVCHQYVK 155
Query: 156 GSLINFYGKFRCLEDADFVFSQLK-RHNTVVWTAKIVNNC--REGHFHQVFNDFKEMGRE 212
+L++ Y + +E A V + H +++ V N G + + M E
Sbjct: 156 SALVHMYSRCSHVELALQVLDTVPGEHVNDIFSYNSVLNALVESGRGEEAVEVLRRMVDE 215
Query: 213 RIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRD 272
+ + T+ V+ C + D G ++HA +++ GL DE+V L+DMYGKC + +
Sbjct: 216 CVAWDHVTYVGVMGLCAQIRDL-QLGLRVHARLLRGGLMFDEFVGSMLIDMYGKCGEVLN 274
Query: 273 AERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
A VF+ + +N+ W A++ Y++NG + E+ M G E L AC+
Sbjct: 275 ARNVFDGL-QNRNVVVWTALMTAYLQNGYFEESLNLFTCMDREGTLPNEYTFAVLLNACA 333
Query: 333 SISA 336
I+A
Sbjct: 334 GIAA 337
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 73/259 (28%), Positives = 129/259 (49%), Gaps = 10/259 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMP---LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
L+ M+ C ++ A Q+ D +P + D S+ ++ V+ +E + + M+
Sbjct: 158 LVHMYSRCSHVELALQVLDTVPGEHVNDIFSYNSVLNALVESGRGEEAVEVLRRMVDE-- 215
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+ + V V+ C +++LG +VH L + G + + LI+ YGK +
Sbjct: 216 ---CVAWDHVTYVGVMGLCAQIRDLQLGLRVHARLLRGGLMFDEFVGSMLIDMYGKCGEV 272
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+A VF L+ N VVWTA + + G+F + N F M RE N YTF+ +L AC
Sbjct: 273 LNARNVFDGLQNRNVVVWTALMTAYLQNGYFEESLNLFTCMDREGTLPNEYTFAVLLNAC 332
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
G+ + G +HA + K+G ++ V+ L++MY K + + VF ++ ++I +
Sbjct: 333 AGIAALRH-GDLLHARVEKLGFKNHVIVRNALINMYSKSGSIDSSYNVFTDMI-YRDIIT 390
Query: 289 WNAMLVGYIRNGLYVEATK 307
WNAM+ GY +GL +A +
Sbjct: 391 WNAMICGYSHHGLGKQALQ 409
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 105/247 (42%), Gaps = 15/247 (6%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ CG++ AR +FD + R+ W ++ Y+ ++E + LF M +
Sbjct: 262 LIDMYGKCGEVLNARNVFDGLQNRNVVVWTALMTAYLQNGYFEESLNLFTCMDREG---- 317
Query: 112 LLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
P + +L AC + G +H + KLG ++ + +LIN Y K ++
Sbjct: 318 --TLPNEYTFAVLLNACAGIAALRHGDLLHARVEKLGFKNHVIVRNALINMYSKSGSIDS 375
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG- 229
+ VF+ + + + W A I G Q F++M N TF VL A
Sbjct: 376 SYNVFTDMIYRDIITWNAMICGYSHHGLGKQALQVFQDMVSAEECPNYVTFIGVLSAYSH 435
Query: 230 -GVDDDG--NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
G+ +G M ++ GL E+ C +V + + LL +AE + K ++
Sbjct: 436 LGLVKEGFYYLNHLMRNFKIEPGL---EHYTC-MVALLSRAGLLDEAENFMKTTQVKWDV 491
Query: 287 ASWNAML 293
+W +L
Sbjct: 492 VAWRTLL 498
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/114 (21%), Positives = 54/114 (47%), Gaps = 14/114 (12%)
Query: 9 TTDMYTCLIKECTFQKDSAGAF--------------ELLNHIRKRVNIKPTLLFLNRLLL 54
+ +++TC+ +E T + A +LL+ +++ K ++ N L+
Sbjct: 306 SLNLFTCMDREGTLPNEYTFAVLLNACAGIAALRHGDLLHARVEKLGFKNHVIVRNALIN 365
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
M+ G +D++ +F +M RD +W MI GY ++ + +F +M+ ++
Sbjct: 366 MYSKSGSIDSSYNVFTDMIYRDIITWNAMICGYSHHGLGKQALQVFQDMVSAEE 419
>gi|297823163|ref|XP_002879464.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325303|gb|EFH55723.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 713
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 88/284 (30%), Positives = 134/284 (47%), Gaps = 9/284 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ C L+ A ++FD R+ +W+ M+ GY + E I LF+ M
Sbjct: 249 NALVTMYSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQNGESLEAIKLFSRMFSAG-- 306
Query: 110 HMLLVFPA-WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+ P+ + IV VL AC + GKQ+H L KLG R++ T +L++ Y K CL
Sbjct: 307 ----IKPSEYTIVGVLNACSDICYLVEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCL 362
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
DA F L+ + +WT+ I + + ++ M I N T +SVLKAC
Sbjct: 363 ADARKGFDCLQERDVALWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKAC 422
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
+ G+Q+H + +K G + + L MY KC L D VF + K++ S
Sbjct: 423 SSLATL-ELGKQVHGHTIKHGFGLEVPIGSALSTMYTKCGSLEDGNLVFRRTPN-KDVVS 480
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
WNAM+ G NG EA + M A G + + ++ ACS
Sbjct: 481 WNAMISGLSHNGQGDEALELFEEMLAEGTEPDDVTFVNIISACS 524
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 111/222 (50%), Gaps = 10/222 (4%)
Query: 118 WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQ 177
++ VL + T+ + LG+Q+HG+ K G ++L+ +L+ Y K L +A +F
Sbjct: 211 YVFTAVLSSLAATVYVGLGRQIHGITVKNGLLGFVALSNALVTMYSKCESLNEACKMFDS 270
Query: 178 LKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC 237
N++ W+A + + G + F M IK + YT VL AC + C
Sbjct: 271 SGDRNSITWSAMVTGYSQNGESLEAIKLFSRMFSAGIKPSEYTIVGVLNACSDI-----C 325
Query: 238 ----GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
G+Q+H+ ++K+G E + LVDMY K L DA + F+ + ++++A W +++
Sbjct: 326 YLVEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDCL-QERDVALWTSLI 384
Query: 294 VGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
GY++N EA MK +GI + + + ACSS++
Sbjct: 385 SGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLA 426
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 82/302 (27%), Positives = 137/302 (45%), Gaps = 49/302 (16%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVD---VADYQECITLFAEMMKR 106
N L+ + CGQL A +F+ + +D SW +I GY ++ + LF EM +
Sbjct: 55 NVLVNFYAKCGQLAKAHSIFNAIICKDVVSWNSLITGYSQNGGISSSHTVMQLFREMRAQ 114
Query: 107 KKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLIN----- 160
+ P A+ + + KA + +G+Q H L+ K+ S +I + SL+
Sbjct: 115 D------ILPNAYTLAGIFKAESSLQSCTVGRQAHALVVKMSSFGDIYVDTSLVGMYCKA 168
Query: 161 --------FYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRE 212
+YG + C + D + QLK +++ + + +E
Sbjct: 169 GLKYLYMVYYGFWLCYKK-DVLRRQLK--SSICFLEE---------------------KE 204
Query: 213 RIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRD 272
+ + Y F++VL + G GRQ+H VK GL + LV MY KC L +
Sbjct: 205 KESDSDYVFTAVLSSLAATVYVG-LGRQIHGITVKNGLLGFVALSNALVTMYSKCESLNE 263
Query: 273 AERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
A ++F+ D+ +I +W+AM+ GY +NG +EA K M ++GI+ E I + ACS
Sbjct: 264 ACKMFDSSGDRNSI-TWSAMVTGYSQNGESLEAIKLFSRMFSAGIKPSEYTIVGVLNACS 322
Query: 333 SI 334
I
Sbjct: 323 DI 324
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 65/141 (46%), Gaps = 4/141 (2%)
Query: 132 NMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIV 191
N+ G+ VH + + G+S L+NFY K L A +F+ + + V W + I
Sbjct: 31 NLVAGRAVHAQIIRTGTSTCTQHANVLVNFYAKCGQLAKAHSIFNAIICKDVVSWNSLIT 90
Query: 192 NNCREGHF---HQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKI 248
+ G H V F+EM + I N+YT + + KA + GRQ HA +VK+
Sbjct: 91 GYSQNGGISSSHTVMQLFREMRAQDILPNAYTLAGIFKAESSL-QSCTVGRQAHALVVKM 149
Query: 249 GLESDEYVQCGLVDMYGKCRL 269
D YV LV MY K L
Sbjct: 150 SSFGDIYVDTSLVGMYCKAGL 170
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYI 297
GR +HA I++ G + LV+ Y KC L A +F I+ K++ SWN+++ GY
Sbjct: 35 GRAVHAQIIRTGTSTCTQHANVLVNFYAKCGQLAKAHSIFNAII-CKDVVSWNSLITGYS 93
Query: 298 RNG 300
+NG
Sbjct: 94 QNG 96
>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Vitis vinifera]
Length = 736
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 91/284 (32%), Positives = 135/284 (47%), Gaps = 8/284 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N LL M+ G + TAR +FD M RD SW MI GY AD +F M G
Sbjct: 200 NSLLAMYAKFGDMGTARMVFDRMAERDLTSWNTMISGYAKNADSGTAFLVFDLM-----G 254
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLG-SSRNISLTGSLINFYGKFRCL 168
L ++ +L AC ++ GK +HG + + N T SLI Y C+
Sbjct: 255 KAGLFADCTTLLGLLSACADLKAVKEGKVIHGYAVRNSIGNYNKFFTNSLIEMYCNCNCM 314
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
DA +F +++ +TV W + I+ R G + F+ M + + TF +VL AC
Sbjct: 315 VDARRLFERVRWKDTVSWNSMILGYARNGDAFESLRLFRRMALDGSGPDQVTFIAVLGAC 374
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
+ G +H+ +VK G +++ V LVDMY KC L + RVF+ + DK ++ S
Sbjct: 375 DQIAAL-RYGMSIHSYLVKKGFDANTIVGTALVDMYSKCGSLACSRRVFDEMPDK-SLVS 432
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
W+AM+ GY +G EA L MKA+ + + + ACS
Sbjct: 433 WSAMVAGYGLHGRGREAISILDGMKANSVIPDNGVFTSILSACS 476
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 82/331 (24%), Positives = 143/331 (43%), Gaps = 8/331 (2%)
Query: 7 PITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTAR 66
P+T+ L++ T K +L H+ ++ +L + CG + A
Sbjct: 56 PLTSLQCGALLQSFTNTKSFKQGQQLHAHMISFSILENNTYLNTKLAAFYAGCGLMSQAE 115
Query: 67 QLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKA 126
+FD + L++ W MI GY + + L+ EM+ + +P VLKA
Sbjct: 116 VIFDGIVLKNSFLWNFMIRGYASNGLPMKSLVLYREMLCFGQRADNFTYP-----FVLKA 170
Query: 127 CVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVW 186
C + +E+G++VH + G +I + SL+ Y KF + A VF ++ + W
Sbjct: 171 CGDLLLVEIGRRVHSEVVVCGLESDIYVGNSLLAMYAKFGDMGTARMVFDRMAERDLTSW 230
Query: 187 TAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIV 246
I + F F MG+ + + T +L AC + G+ +H V
Sbjct: 231 NTMISGYAKNADSGTAFLVFDLMGKAGLFADCTTLLGLLSACADLKAVKE-GKVIHGYAV 289
Query: 247 KIGLES-DEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEA 305
+ + + +++ L++MY C + DA R+FE V K+ SWN+M++GY RNG E+
Sbjct: 290 RNSIGNYNKFFTNSLIEMYCNCNCMVDARRLFER-VRWKDTVSWNSMILGYARNGDAFES 348
Query: 306 TKFLYLMKASGIQIQESLINDLRIACSSISA 336
+ M G + + AC I+A
Sbjct: 349 LRLFRRMALDGSGPDQVTFIAVLGACDQIAA 379
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 115/244 (47%), Gaps = 8/244 (3%)
Query: 101 AEMMKRK---KGHMLLVFPAWIIVC--VLKACVCTMNMELGKQVHGLLFKLGS-SRNISL 154
A+M++R + H L +P + C +L++ T + + G+Q+H + N L
Sbjct: 38 AQMVERSLSMREHPLQQYPLTSLQCGALLQSFTNTKSFKQGQQLHAHMISFSILENNTYL 97
Query: 155 TGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERI 214
L FY + A+ +F + N+ +W I G + ++EM
Sbjct: 98 NTKLAAFYAGCGLMSQAEVIFDGIVLKNSFLWNFMIRGYASNGLPMKSLVLYREMLCFGQ 157
Query: 215 KKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAE 274
+ +++T+ VLKACG + GR++H+ +V GLESD YV L+ MY K + A
Sbjct: 158 RADNFTYPFVLKACGDLLLV-EIGRRVHSEVVVCGLESDIYVGNSLLAMYAKFGDMGTAR 216
Query: 275 RVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
VF+ + ++ ++ SWN M+ GY +N A LM +G+ + + L AC+ +
Sbjct: 217 MVFDRMAER-DLTSWNTMISGYAKNADSGTAFLVFDLMGKAGLFADCTTLLGLLSACADL 275
Query: 335 SASK 338
A K
Sbjct: 276 KAVK 279
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 105/255 (41%), Gaps = 17/255 (6%)
Query: 47 LFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR 106
F N L+ M+ +C + AR+LF+ + +D SW MI+GY D E + LF M
Sbjct: 299 FFTNSLIEMYCNCNCMVDARRLFERVRWKDTVSWNSMILGYARNGDAFESLRLFRRMALD 358
Query: 107 KKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166
G + F + VL AC + G +H L K G N + +L++ Y K
Sbjct: 359 GSGPDQVTF-----IAVLGACDQIAALRYGMSIHSYLVKKGFDANTIVGTALVDMYSKCG 413
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
L + VF ++ + V W+A + G + + M + ++ F+S+L
Sbjct: 414 SLACSRRVFDEMPDKSLVSWSAMVAGYGLHGRGREAISILDGMKANSVIPDNGVFTSILS 473
Query: 227 ACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGL------VDMYGKCRLLRDAERVFELI 280
AC + G + + +E + V+ L VD+ G+ L +A + +
Sbjct: 474 AC------SHAGLVVEGKEIFYKMEKEYNVKPALSHYSCMVDLLGRAGHLDEAYVIIRTM 527
Query: 281 VDKKNIASWNAMLVG 295
K W A+L
Sbjct: 528 EIKPTSDIWAALLTA 542
>gi|357457743|ref|XP_003599152.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355488200|gb|AES69403.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1125
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 81/272 (29%), Positives = 125/272 (45%), Gaps = 9/272 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N LL M+ G + A +F MP RD SW M+ +V+ Y I L EM+K +K
Sbjct: 491 NSLLSMYAQAGSSEDAELVFHTMPARDLISWNSMMASHVEDGKYSHAILLLVEMLKTRKA 550
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ F L AC N+E K VH + N+ + +L+ YGKF ++
Sbjct: 551 MNYVTF-----TTALSAC---YNLEKLKIVHAFVIHFAVHHNLIIGNTLVTMYGKFGLMD 602
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
+A V + + V W A I + + + F M RE + N T ++L C
Sbjct: 603 EAQKVCKIMPERDVVTWNALIGGHADDKDPNATIQAFNLMRREGLLSNYITIVNLLGTCM 662
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
D G +HA+IV G E D YVQ L+ MY +C L + +F+++ + KN ++W
Sbjct: 663 SPDYLLKHGMPIHAHIVVAGFELDTYVQSSLITMYAQCGDLNTSSYIFDVLAN-KNSSTW 721
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQE 321
NA+ G EA KF+ M+ G+ + +
Sbjct: 722 NAIFSANAHYGPGEEALKFIARMRNDGVDLDQ 753
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 77/293 (26%), Positives = 141/293 (48%), Gaps = 7/293 (2%)
Query: 42 IKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFA 101
I+ + N L+ M+ G + A+ +FD+M R+ SW MI G+V V Y + + F
Sbjct: 178 IQQNTFYTNTLVNMYSKFGSIKYAQHVFDKMYDRNDASWNNMISGFVRVGWYHKAMQFFC 237
Query: 102 EMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINF 161
M + V + + C C+ E +Q+HG + K G N+ + SL++F
Sbjct: 238 HMFENGVTPSSYVIASMVTACDRSGCM----TEGARQIHGYVVKCGLMSNVFVGTSLLHF 293
Query: 162 YGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTF 221
YG + +A+ +F +++ N V WT+ +V GH +V N ++ + + T
Sbjct: 294 YGTHGSVSEANKLFEEIEEPNIVSWTSLMVCYADNGHTKEVLNIYRHLRHNGLICTGNTM 353
Query: 222 SSVLKACGGVDDDGNCGRQMHANIVKIGLESDEY-VQCGLVDMYGKCRLLRDAERVFELI 280
++V++ CG D G Q+ +++K GL++ V L+ M+G + +A RVF +
Sbjct: 354 ATVIRTCGMFGDK-TMGYQILGDVIKSGLDTSSVSVANSLISMFGNYDSVEEASRVFNNM 412
Query: 281 VDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSS 333
++ I SWN+++ NG + E+ + M+ + + I+ L AC S
Sbjct: 413 QERDTI-SWNSIITASAHNGRFEESLGHFFWMRRTHPKTDYITISALLPACGS 464
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 81/294 (27%), Positives = 134/294 (45%), Gaps = 12/294 (4%)
Query: 42 IKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFA 101
+ L+ N L+ M+ G +D A+++ MP RD +W +I G+ D D I F
Sbjct: 581 VHHNLIIGNTLVTMYGKFGLMDEAQKVCKIMPERDVVTWNALIGGHADDKDPNATIQAFN 640
Query: 102 EMMKRKKGHMLLVFPAWIIVCVLKACVCT-MNMELGKQVHGLLFKLGSSRNISLTGSLIN 160
M R++G L+ IV +L C+ ++ G +H + G + + SLI
Sbjct: 641 LM--RREG---LLSNYITIVNLLGTCMSPDYLLKHGMPIHAHIVVAGFELDTYVQSSLIT 695
Query: 161 FYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYT 220
Y + L + ++F L N+ W A N G + M + + + ++
Sbjct: 696 MYAQCGDLNTSSYIFDVLANKNSSTWNAIFSANAHYGPGEEALKFIARMRNDGVDLDQFS 755
Query: 221 FSSVLKACGG--VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE 278
FS L G V D+G +Q+H+ I+K+G E DEYV +DMYGKC + D R+
Sbjct: 756 FSVALATIGNLTVLDEG---QQLHSWIIKLGFELDEYVLNATMDMYGKCGEIDDVFRILP 812
Query: 279 LIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
I ++ SWN ++ R+G + +AT+ + M G++ L ACS
Sbjct: 813 -IPKIRSKRSWNILISALARHGFFRQATEAFHEMLDLGLKPDHVTFVSLLSACS 865
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 73/325 (22%), Positives = 148/325 (45%), Gaps = 10/325 (3%)
Query: 9 TTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQL 68
T + +I+ C D +++L + K ++ N L+ M + ++ A ++
Sbjct: 349 TGNTMATVIRTCGMFGDKTMGYQILGDVIKSGLDTSSVSVANSLISMFGNYDSVEEASRV 408
Query: 69 FDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACV 128
F+ M RD SW +I ++E + F M + + A +L AC
Sbjct: 409 FNNMQERDTISWNSIITASAHNGRFEESLGHFFWMRRTHPKTDYITISA-----LLPACG 463
Query: 129 CTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTA 188
+++ G+ +HGL+ K G N+ + SL++ Y + EDA+ VF + + + W +
Sbjct: 464 SAQHLKWGRGLHGLITKSGLESNVCVCNSLLSMYAQAGSSEDAELVFHTMPARDLISWNS 523
Query: 189 KIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKI 248
+ ++ +G + EM + R N TF++ L AC ++ + +HA ++
Sbjct: 524 MMASHVEDGKYSHAILLLVEMLKTRKAMNYVTFTTALSACYNLEKL----KIVHAFVIHF 579
Query: 249 GLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKF 308
+ + + LV MYGK L+ +A++V + I+ ++++ +WNA++ G+ + +
Sbjct: 580 AVHHNLIIGNTLVTMYGKFGLMDEAQKVCK-IMPERDVVTWNALIGGHADDKDPNATIQA 638
Query: 309 LYLMKASGIQIQESLINDLRIACSS 333
LM+ G+ I +L C S
Sbjct: 639 FNLMRREGLLSNYITIVNLLGTCMS 663
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 90/187 (48%), Gaps = 9/187 (4%)
Query: 135 LGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNC 194
+GK +H L K +N T +L+N Y KF ++ A VF ++ N W I
Sbjct: 165 VGKALHALCVKDVIQQNTFYTNTLVNMYSKFGSIKYAQHVFDKMYDRNDASWNNMISGFV 224
Query: 195 REGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC----GRQMHANIVKIGL 250
R G +H+ F M + +SY +S++ AC D C RQ+H +VK GL
Sbjct: 225 RVGWYHKAMQFFCHMFENGVTPSSYVIASMVTAC----DRSGCMTEGARQIHGYVVKCGL 280
Query: 251 ESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLY 310
S+ +V L+ YG + +A ++FE I ++ NI SW +++V Y NG E
Sbjct: 281 MSNVFVGTSLLHFYGTHGSVSEANKLFEEI-EEPNIVSWTSLMVCYADNGHTKEVLNIYR 339
Query: 311 LMKASGI 317
++ +G+
Sbjct: 340 HLRHNGL 346
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 56/98 (57%), Gaps = 1/98 (1%)
Query: 234 DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
+GN G+ +HA VK ++ + + LV+MY K ++ A+ VF+ + D +N ASWN M+
Sbjct: 162 EGNVGKALHALCVKDVIQQNTFYTNTLVNMYSKFGSIKYAQHVFDKMYD-RNDASWNNMI 220
Query: 294 VGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
G++R G Y +A +F M +G+ +I + AC
Sbjct: 221 SGFVRVGWYHKAMQFFCHMFENGVTPSSYVIASMVTAC 258
>gi|224088075|ref|XP_002308315.1| predicted protein [Populus trichocarpa]
gi|222854291|gb|EEE91838.1| predicted protein [Populus trichocarpa]
Length = 545
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 90/336 (26%), Positives = 161/336 (47%), Gaps = 14/336 (4%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFL-NRLLLMHVSC 59
MD +PI D+Y L++ C + + ++ + I K + T +L +L + + C
Sbjct: 1 MDRRKIPIGPDIYGLLLQGCLYDRALFMGQQIHSRIIKIGDSLATNEYLETKLFIFYAKC 60
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI 119
+ A F + +++ SWA +I + Y+E + EM+ ++ ++
Sbjct: 61 HLFEVANNFFSRLSVKNVFSWAAIIGLNCRMGFYREALMGLCEMIDTG-----ILADNFV 115
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
+ +LKAC + G+ VHG + K+G R + ++ SL++ YGK LEDA VF +
Sbjct: 116 VPNILKACAALQWISFGRGVHGYVVKMGFDRCVFVSSSLVDAYGKCGILEDARKVFDNMS 175
Query: 180 RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC---GGVDDDGN 236
N V W + I + + G + F EM E ++ N T S L A G V++
Sbjct: 176 DKNVVTWNSMIGSYVQNGFDVEAARVFSEMRLEDVEPNQVTLLSFLSASANLGAVEE--- 232
Query: 237 CGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGY 296
G+Q HA V G E D + +++ Y K L++DAE VF ++++K +A WN ++ Y
Sbjct: 233 -GKQAHAIAVLGGYELDSILGGSILNFYSKVGLIKDAELVFGMMLEKDAVA-WNLLISSY 290
Query: 297 IRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
++ G +A +LM+ ++ + + ACS
Sbjct: 291 VQYGQVEKALDLCHLMRLENMRFDSVTLASILSACS 326
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/216 (31%), Positives = 112/216 (51%), Gaps = 4/216 (1%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSS--RNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
+L+ C+ + +G+Q+H + K+G S N L L FY K E A+ FS+L
Sbjct: 16 LLQGCLYDRALFMGQQIHSRIIKIGDSLATNEYLETKLFIFYAKCHLFEVANNFFSRLSV 75
Query: 181 HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQ 240
N W A I NCR G + + EM I +++ ++LKAC + + GR
Sbjct: 76 KNVFSWAAIIGLNCRMGFYREALMGLCEMIDTGILADNFVVPNILKACAALQWI-SFGRG 134
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
+H +VK+G + +V LVD YGKC +L DA +VF+ + DK N+ +WN+M+ Y++NG
Sbjct: 135 VHGYVVKMGFDRCVFVSSSLVDAYGKCGILEDARKVFDNMSDK-NVVTWNSMIGSYVQNG 193
Query: 301 LYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
VEA + M+ ++ + + A +++ A
Sbjct: 194 FDVEAARVFSEMRLEDVEPNQVTLLSFLSASANLGA 229
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/295 (27%), Positives = 129/295 (43%), Gaps = 42/295 (14%)
Query: 59 CGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAW 118
CG L+ AR++FD M ++ +W MI YV E +F+EM V P
Sbjct: 161 CGILEDARKVFDNMSDKNVVTWNSMIGSYVQNGFDVEAARVFSEMRLED------VEPNQ 214
Query: 119 I-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQ 177
+ ++ L A +E GKQ H + G + L GS++NFY K ++DA+ VF
Sbjct: 215 VTLLSFLSASANLGAVEEGKQAHAIAVLGGYELDSILGGSILNFYSKVGLIKDAELVFGM 274
Query: 178 LKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC 237
+ + V W I + + G + + M E ++ +S T +S+L AC + +
Sbjct: 275 MLEKDAVAWNLLISSYVQYGQVEKALDLCHLMRLENMRFDSVTLASILSACS-IMGNIEL 333
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK-------------- 283
G++ H ++ L SD V ++DMY KC + DA VF ++K
Sbjct: 334 GKEGHCYCIRNYLVSDLAVANSMIDMYAKCEKIADARHVFNSTMNKDLLLWNTLLTAYAE 393
Query: 284 --------------------KNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
N+ SWNA+++G+IRNG EA M+A GI
Sbjct: 394 LGVTGEVLKLFYGMQLESVPPNVMSWNAVILGFIRNGQINEAQDMFSHMQAVGIH 448
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 93/213 (43%), Gaps = 8/213 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
+L + G + A +F M +D +W ++I YV ++ + L +M+ +
Sbjct: 255 ILNFYSKVGLIKDAELVFGMMLEKDAVAWNLLISSYVQYGQVEKALDL-CHLMRLEN--- 310
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+ F + + +L AC N+ELGK+ H + ++++ S+I+ Y K + DA
Sbjct: 311 -MRFDSVTLASILSACSIMGNIELGKEGHCYCIRNYLVSDLAVANSMIDMYAKCEKIADA 369
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--- 228
VF+ + ++W + G +V F M E + N ++++V+
Sbjct: 370 RHVFNSTMNKDLLLWNTLLTAYAELGVTGEVLKLFYGMQLESVPPNVMSWNAVILGFIRN 429
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLV 261
G +++ + M A + L + + CGLV
Sbjct: 430 GQINEAQDMFSHMQAVGIHPNLMTFTTLICGLV 462
Score = 38.1 bits (87), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 27/128 (21%), Positives = 58/128 (45%), Gaps = 9/128 (7%)
Query: 41 NIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL----RDFNSWAVMIVGYVDVADYQEC 96
++ P ++ N ++L + GQ++ A+ +F M + ++ +I G V E
Sbjct: 411 SVPPNVMSWNAVILGFIRNGQINEAQDMFSHMQAVGIHPNLMTFTTLICGLVQNGFGNEA 470
Query: 97 ITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTG 156
I +F +M ++ + P II+ + AC +++ G+ +HG + + I +
Sbjct: 471 ILVFQKM---QECGIRANLP--IIISTISACTDVASLQYGRAIHGYILRHDLLSPIPVAT 525
Query: 157 SLINFYGK 164
+L Y K
Sbjct: 526 ALAEMYSK 533
>gi|357128220|ref|XP_003565772.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g13230, mitochondrial-like [Brachypodium distachyon]
Length = 1206
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 85/283 (30%), Positives = 133/283 (46%), Gaps = 9/283 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL M+ CG ++ AR F+ + D W++MI Y ++ LF MM+
Sbjct: 673 LLDMYAKCGNIEDARLAFEMVTNDDVILWSLMISRYAQCNQNEQAFELFIRMMRSS---- 728
Query: 112 LLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
V P + + VL+AC ++LGKQ+H K+G + + +LI+ Y K +E
Sbjct: 729 --VSPNEFSLSSVLQACANMPLLDLGKQIHNHAIKIGHESELFVGNALIDLYAKCSDMES 786
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
+ +FS L+ N V W IV + G + F+EM + T+SSVL+AC
Sbjct: 787 SLEIFSSLRDVNEVSWNTIIVGYSKSGFGEAALSVFREMRAASVPSTQVTYSSVLRACAS 846
Query: 231 VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWN 290
+ G Q+H I K SD V L+D Y KC +RDA +FE + + ++ SWN
Sbjct: 847 TASINHVG-QVHCLIEKSTFNSDTIVSNSLIDSYAKCGCIRDAREIFETL-KECDLVSWN 904
Query: 291 AMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSS 333
A++ GY +G A + +M + I+ + L C S
Sbjct: 905 AIISGYAVHGQAAMAQELFDMMSKNSIKANDITFVALLSVCGS 947
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 76/278 (27%), Positives = 137/278 (49%), Gaps = 7/278 (2%)
Query: 59 CGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAW 118
CG + AR++FD + +D +W M+ Y + + + +F++M R L F
Sbjct: 579 CGVVSDARRVFDGIVGKDAVAWTAMVSCYSENDCPENTLQIFSKM--RVAVSKLNPF--- 633
Query: 119 IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL 178
+ VL+A VC ++ LGK +H K + G+L++ Y K +EDA F +
Sbjct: 634 ALTSVLRAAVCLSSVVLGKGIHACSVKTLYDTERHVYGALLDMYAKCGNIEDARLAFEMV 693
Query: 179 KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCG 238
+ ++W+ I + Q F F M R + N ++ SSVL+AC + + G
Sbjct: 694 TNDDVILWSLMISRYAQCNQNEQAFELFIRMMRSSVSPNEFSLSSVLQACANMPLL-DLG 752
Query: 239 RQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIR 298
+Q+H + +KIG ES+ +V L+D+Y KC + + +F + D + SWN ++VGY +
Sbjct: 753 KQIHNHAIKIGHESELFVGNALIDLYAKCSDMESSLEIFSSLRDVNEV-SWNTIIVGYSK 811
Query: 299 NGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+G A M+A+ + + + + AC+S ++
Sbjct: 812 SGFGEAALSVFREMRAASVPSTQVTYSSVLRACASTAS 849
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 86/328 (26%), Positives = 151/328 (46%), Gaps = 16/328 (4%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLF-LNRLLLMHVSCGQLDTARQLFDE 71
Y L++ C + D+ G + H+ + + LF N LL M+ G +A ++FD
Sbjct: 431 YARLLQGCVARGDARGGRAVHGHVVRSGGLARLDLFCANVLLNMYTKVGPFGSAHRVFDG 490
Query: 72 MPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTM 131
+P R+ S+ ++ G+ +++E LF + R +GH + F ++ VLK V
Sbjct: 491 LPERNMVSFVTLVQGHALRGEFEEASALFQRL--RWEGHEVNQF---VLTTVLKLVVAMD 545
Query: 132 NMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIV 191
+ L VH KLG RN + +LI+ Y + DA VF + + V WTA +
Sbjct: 546 TLGLAWGVHACACKLGHDRNAFVGSALIDAYSMCGVVSDARRVFDGIVGKDAVAWTAMVS 605
Query: 192 ----NNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVK 247
N+C E F +M K N + +SVL+A + G+ +HA VK
Sbjct: 606 CYSENDCPE----NTLQIFSKMRVAVSKLNPFALTSVLRAAVCLSSV-VLGKGIHACSVK 660
Query: 248 IGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATK 307
+++ +V L+DMY KC + DA FE++ + ++ W+ M+ Y + +A +
Sbjct: 661 TLYDTERHVYGALLDMYAKCGNIEDARLAFEMVTN-DDVILWSLMISRYAQCNQNEQAFE 719
Query: 308 FLYLMKASGIQIQESLINDLRIACSSIS 335
M S + E ++ + AC+++
Sbjct: 720 LFIRMMRSSVSPNEFSLSSVLQACANMP 747
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 116/266 (43%), Gaps = 12/266 (4%)
Query: 31 ELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFN--SWAVMIVGYV 88
++ NH K + + L N L+ ++ C ++++ ++F LRD N SW +IVGY
Sbjct: 754 QIHNHAIK-IGHESELFVGNALIDLYAKCSDMESSLEIFSS--LRDVNEVSWNTIIVGYS 810
Query: 89 DVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGS 148
+ +++F EM + + + VL+AC T ++ QVH L+ K
Sbjct: 811 KSGFGEAALSVFREMRAASVPSTQVTYSS-----VLRACASTASINHVGQVHCLIEKSTF 865
Query: 149 SRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKE 208
+ + ++ SLI+ Y K C+ DA +F LK + V W A I G F
Sbjct: 866 NSDTIVSNSLIDSYAKCGCIRDAREIFETLKECDLVSWNAIISGYAVHGQAAMAQELFDM 925
Query: 209 MGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLE-SDEYVQCGLVDMYGKC 267
M + IK N TF ++L CG + + G+E S E+ C +V + G+
Sbjct: 926 MSKNSIKANDITFVALLSVCGSTGLVSQGLSLFDSMRLDHGIEPSMEHYTC-IVRLLGRA 984
Query: 268 RLLRDAERVFELIVDKKNIASWNAML 293
L DA I + W A+L
Sbjct: 985 GRLNDALNFIGDIPSAPSAMVWRALL 1010
>gi|147801171|emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]
Length = 957
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 80/269 (29%), Positives = 140/269 (52%), Gaps = 8/269 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ G++ A +F M D SW M+ G+V Y E + + EM +
Sbjct: 321 NALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQK 380
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
L+ ++ ++ A + N G Q+H K G ++ + SL++ Y KF ++
Sbjct: 381 PDLVA-----VISIIAASARSGNTLHGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMK 435
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
D +F ++ + V WT I + + G + F+E+ E I + SS+L AC
Sbjct: 436 YMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACS 495
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
G+ + +++H+ I++ GL SD +Q G+VD+YG+C + A R+FELI + K++ SW
Sbjct: 496 GLKLISSV-KEIHSYIIRKGL-SDLVLQNGIVDVYGECGNVDYAARMFELI-EFKDVVSW 552
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
+M+ Y+ NGL EA + +LMK +G++
Sbjct: 553 TSMISCYVHNGLANEALELFHLMKETGVE 581
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 90/333 (27%), Positives = 158/333 (47%), Gaps = 15/333 (4%)
Query: 6 LPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFL-NRLLLMHVSCGQLDT 64
+P+ + C++K C KD E+ K + +++F+ N ++ M+ C L+
Sbjct: 176 IPLDACTFPCILKACGLLKDRRYGAEVHGLAIKEGYV--SIVFVANSIVGMYTKCNDLNG 233
Query: 65 ARQLFDEMPLR-DFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCV 123
ARQLFD MP + D SW MI Y E + LF EM K L + V
Sbjct: 234 ARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKAS-----LAPNTYTFVAA 288
Query: 124 LKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNT 183
L+AC + ++ G +H + K N+ + +LI Y +F + +A +F + +T
Sbjct: 289 LQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDT 348
Query: 184 VVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC--GRQM 241
+ W + + + G +H+ + EM K + S++ A GN G Q+
Sbjct: 349 ISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASA---RSGNTLHGMQI 405
Query: 242 HANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGL 301
HA +K GL+SD V LVDMY K ++ + +F+ + D K++ SW ++ G+ +NG
Sbjct: 406 HAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPD-KDVVSWTTIIAGHAQNGS 464
Query: 302 YVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
+ A + ++ GI + +I+ + +ACS +
Sbjct: 465 HSRALELFREVQLEGIDLDVMMISSILLACSGL 497
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 93/331 (28%), Positives = 159/331 (48%), Gaps = 20/331 (6%)
Query: 11 DMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFD 70
+ Y+ +++ C +K + ++ H+ + ++ RL+ M+ CG L A +LFD
Sbjct: 79 EAYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFD 138
Query: 71 EMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCT 130
MP + +W MI YV + + L+ EM R G + A C+LKAC
Sbjct: 139 GMPHKTIFTWNAMIGAYVTNGEPLGSLELYREM--RVSG---IPLDACTFPCILKACGLL 193
Query: 131 MNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL-KRHNTVVWTAK 189
+ G +VHGL K G + + S++ Y K L A +F ++ ++ + V W +
Sbjct: 194 KDRRYGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSM 253
Query: 190 IVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQ---MHANIV 246
I G + F EM + + N+YTF + L+AC +D + +Q +HA ++
Sbjct: 254 ISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQAC----EDSSFIKQGMFIHATVL 309
Query: 247 KIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEAT 306
K + +V L+ MY + + +A +F + D I SWN+ML G+++NGLY EA
Sbjct: 310 KSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTI-SWNSMLSGFVQNGLYHEAL 368
Query: 307 KFLYLMKASGIQIQESLINDLRIACSSISAS 337
+F + M+ +G + DL S I+AS
Sbjct: 369 QFYHEMRDAGQK------PDLVAVISIIAAS 393
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 119/252 (47%), Gaps = 13/252 (5%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L+ N ++ ++ CG +D A ++F+ + +D SW MI YV E + LF +MK
Sbjct: 518 LVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELF-HLMK 576
Query: 106 RKKGHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
V P I +V +L A ++ GK++HG L + G SL +L++ Y +
Sbjct: 577 ETG-----VEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMYAR 631
Query: 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
LE + VF+ ++ + V+WT+ I G + F+ M E I + F +V
Sbjct: 632 CGTLEKSRNVFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAV 691
Query: 225 LKAC--GGVDDDGNCGRQMHANIVKIGLES-DEYVQCGLVDMYGKCRLLRDAERVFELIV 281
L AC G+ ++G R + + + LE E+ C LVD+ G+ L +A + + +
Sbjct: 692 LYACSHSGLMNEGR--RFLESMKYEYQLEPWPEHYAC-LVDLLGRANHLEEAYQFVKGME 748
Query: 282 DKKNIASWNAML 293
+ W A+L
Sbjct: 749 VEPTAEVWCALL 760
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 69/139 (49%), Gaps = 6/139 (4%)
Query: 185 VWTAKIVNNCREGHFHQVFNDFKEMGRERIKKN---SYTFSSVLKACGGVDDDGNCGRQM 241
V T + C+ G ++ F ++ + +SSVL+ CG G+Q+
Sbjct: 42 VETPSLREICKRGSVNEAFQSLTDLFANQSPSQFSLDEAYSSVLELCGSKKALSE-GQQV 100
Query: 242 HAN-IVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
HA+ I L + ++ LV MYGKC L DAE++F+ + K I +WNAM+ Y+ NG
Sbjct: 101 HAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDGM-PHKTIFTWNAMIGAYVTNG 159
Query: 301 LYVEATKFLYLMKASGIQI 319
+ + + M+ SGI +
Sbjct: 160 EPLGSLELYREMRVSGIPL 178
>gi|357521373|ref|XP_003630975.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355524997|gb|AET05451.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 701
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 90/333 (27%), Positives = 161/333 (48%), Gaps = 22/333 (6%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHV--- 57
M +L +P ++ L+K T K A L + R+ + L N L+ +
Sbjct: 101 MRSLSVPPNRHVFPSLLKASTLLKHHKLAHSL-HACTVRLGLDSDLYIANALINTYAKFH 159
Query: 58 SCGQ------------LDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
+ G+ +D +++FD MP+RD SW +I G+ Y E + + EM K
Sbjct: 160 NAGKVFDVFPKRGESGIDCVKKVFDMMPVRDVVSWNTVIAGFAQNGMYVEALDMVREMGK 219
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
K L ++ + +L +++ GK++HG + G ++ + SLI+ Y K
Sbjct: 220 NGK----LKPDSFTLSSILPIFAEHVDVNKGKEIHGYAVRNGFDGDVFIGSSLIDMYAKC 275
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
LE + F L R + + W + I + G F + F+ M +E +K + +FSSV+
Sbjct: 276 NRLECSLRAFYILPRKDAISWNSIIAGCVQNGEFDRGLGFFRRMLKENVKPMAVSFSSVI 335
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
AC + + GRQ+H IV++G + +E++ LVDMY KC ++ A VF+ I DK++
Sbjct: 336 PACAHL-TALSLGRQLHGCIVRLGFDDNEFIASSLVDMYAKCGNIKMARYVFDRI-DKRD 393
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
+ +W A+++G +G ++A M G++
Sbjct: 394 MVAWTAIIMGCAMHGHALDAVSLFENMLEDGVR 426
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 121/277 (43%), Gaps = 29/277 (10%)
Query: 79 SWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQ 138
+W+ +I Y + + F M VFP+ +LKA + +L
Sbjct: 77 AWSSIIKCYTSHSLLHLSFSSFNSMRSLSVPPNRHVFPS-----LLKASTLLKHHKLAHS 131
Query: 139 VHGLLFKLGSSRNISLTGSLINFYGKFR------------------CLEDADFVFSQLKR 180
+H +LG ++ + +LIN Y KF C++ VF +
Sbjct: 132 LHACTVRLGLDSDLYIANALINTYAKFHNAGKVFDVFPKRGESGIDCVKK---VFDMMPV 188
Query: 181 HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRE-RIKKNSYTFSSVLKACGGVDDDGNCGR 239
+ V W I + G + + + +EMG+ ++K +S+T SS+L D N G+
Sbjct: 189 RDVVSWNTVIAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFAE-HVDVNKGK 247
Query: 240 QMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRN 299
++H V+ G + D ++ L+DMY KC L + R F I+ +K+ SWN+++ G ++N
Sbjct: 248 EIHGYAVRNGFDGDVFIGSSLIDMYAKCNRLECSLRAF-YILPRKDAISWNSIIAGCVQN 306
Query: 300 GLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
G + F M ++ + + AC+ ++A
Sbjct: 307 GEFDRGLGFFRRMLKENVKPMAVSFSSVIPACAHLTA 343
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 92/186 (49%), Gaps = 7/186 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ C +L+ + + F +P +D SW +I G V ++ + F M+K M
Sbjct: 268 LIDMYAKCNRLECSLRAFYILPRKDAISWNSIIAGCVQNGEFDRGLGFFRRMLKENVKPM 327
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+ F + V+ AC + LG+Q+HG + +LG N + SL++ Y K ++ A
Sbjct: 328 AVSFSS-----VIPACAHLTALSLGRQLHGCIVRLGFDDNEFIASSLVDMYAKCGNIKMA 382
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--G 229
+VF ++ + + V WTA I+ GH + F+ M + ++ F +VL AC
Sbjct: 383 RYVFDRIDKRDMVAWTAIIMGCAMHGHALDAVSLFENMLEDGVRPCYVAFMAVLTACSHA 442
Query: 230 GVDDDG 235
G+ D+G
Sbjct: 443 GLVDEG 448
>gi|297828580|ref|XP_002882172.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297328012|gb|EFH58431.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 638
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 84/301 (27%), Positives = 143/301 (47%), Gaps = 15/301 (4%)
Query: 2 DNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQ 61
DN LP+ +K C ++ + ++K V + L + L+ M+V CG+
Sbjct: 40 DNFTLPVA-------LKACGELREVKYGEMIHGFLKKNVTLGSDLYVGSSLIYMYVKCGR 92
Query: 62 LDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI-I 120
+ A ++F+E+ D +W+ M+ G+ + + F M V P + +
Sbjct: 93 MTEALRMFNELEKPDIVTWSSMVSGFEKNGSPYQAVEFFRRMATASD-----VTPDRVTL 147
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
+ ++ AC N LG+ VHG + + G S ++SL SL+N Y K R ++A +F +
Sbjct: 148 ITLVSACTKLSNSRLGRCVHGFVMRRGFSNDLSLVNSLLNCYAKSRAFKEAVNLFKMMAE 207
Query: 181 HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQ 240
+ + W+ I + G + F EM + + N T VL+AC +D GR+
Sbjct: 208 KDVISWSTVIACYVQNGAAAEALRVFNEMIDDGTEPNVATVLCVLQACAAANDLEQ-GRK 266
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
H ++ GLE++ V LVDMY KC +A VF I KK++ SW A++ G+ NG
Sbjct: 267 THELAIRKGLETEVKVSTALVDMYMKCFSPEEAYAVFSRI-PKKDVVSWVALISGFTLNG 325
Query: 301 L 301
+
Sbjct: 326 M 326
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 76/294 (25%), Positives = 137/294 (46%), Gaps = 19/294 (6%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L +N LL + A LF M +D SW+ +I YV E + +F EM+
Sbjct: 179 LSLVNSLLNCYAKSRAFKEAVNLFKMMAEKDVISWSTVIACYVQNGAAAEALRVFNEMID 238
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
+ ++CVL+AC ++E G++ H L + G + ++ +L++ Y K
Sbjct: 239 DGTEPNVAT-----VLCVLQACAAANDLEQGRKTHELAIRKGLETEVKVSTALVDMYMKC 293
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRE-RIKKNSYTFSSV 224
E+A VFS++ + + V W A I G H+ +F M E + ++ V
Sbjct: 294 FSPEEAYAVFSRIPKKDVVSWVALISGFTLNGMAHRSIEEFSIMLLENNTRPDAILMLKV 353
Query: 225 LKACG--GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282
L +C G C H+ ++K G +S+ ++ LV++Y +C L +A +VF I
Sbjct: 354 LGSCSELGFLKQAEC---FHSYVIKYGFDSNPFIGASLVELYSRCGSLGNASKVFNEIAL 410
Query: 283 KKNIASWNAMLVGYIRNGLYVEATK----FLYLMKASGIQIQESLINDLRIACS 332
K + W +++ GY G++ + TK F +++++S ++ E + ACS
Sbjct: 411 KDTVV-WTSLITGY---GIHGKGTKALETFNHMVRSSEVKPNEVTFLSILSACS 460
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/266 (21%), Positives = 126/266 (47%), Gaps = 13/266 (4%)
Query: 72 MPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTM 131
M R W ++ +++ + F++M + ++ P LKAC
Sbjct: 1 MTKRTLYQWNTLLKSLSRDKHWEQVMCHFSQMFRDEEKPDNFTLPV-----ALKACGELR 55
Query: 132 NMELGKQVHGLLFK---LGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTA 188
++ G+ +HG L K LGS ++ + SLI Y K + +A +F++L++ + V W++
Sbjct: 56 EVKYGEMIHGFLKKNVTLGS--DLYVGSSLIYMYVKCGRMTEALRMFNELEKPDIVTWSS 113
Query: 189 KIVNNCREGHFHQVFNDFKEMGRER-IKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVK 247
+ + G +Q F+ M + + T +++ AC + + GR +H +++
Sbjct: 114 MVSGFEKNGSPYQAVEFFRRMATASDVTPDRVTLITLVSACTKLSNS-RLGRCVHGFVMR 172
Query: 248 IGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATK 307
G +D + L++ Y K R ++A +F+++ +K ++ SW+ ++ Y++NG EA +
Sbjct: 173 RGFSNDLSLVNSLLNCYAKSRAFKEAVNLFKMMAEK-DVISWSTVIACYVQNGAAAEALR 231
Query: 308 FLYLMKASGIQIQESLINDLRIACSS 333
M G + + + + AC++
Sbjct: 232 VFNEMIDDGTEPNVATVLCVLQACAA 257
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 83/156 (53%), Gaps = 4/156 (2%)
Query: 186 WTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANI 245
W + + R+ H+ QV F +M R+ K +++T LKACG + + G +H +
Sbjct: 9 WNTLLKSLSRDKHWEQVMCHFSQMFRDEEKPDNFTLPVALKACGELREV-KYGEMIHGFL 67
Query: 246 VK-IGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVE 304
K + L SD YV L+ MY KC + +A R+F + +K +I +W++M+ G+ +NG +
Sbjct: 68 KKNVTLGSDLYVGSSLIYMYVKCGRMTEALRMFNEL-EKPDIVTWSSMVSGFEKNGSPYQ 126
Query: 305 ATKFLYLM-KASGIQIQESLINDLRIACSSISASKI 339
A +F M AS + + L AC+ +S S++
Sbjct: 127 AVEFFRRMATASDVTPDRVTLITLVSACTKLSNSRL 162
>gi|302817567|ref|XP_002990459.1| hypothetical protein SELMODRAFT_131642 [Selaginella moellendorffii]
gi|300141844|gb|EFJ08552.1| hypothetical protein SELMODRAFT_131642 [Selaginella moellendorffii]
Length = 830
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/253 (32%), Positives = 129/253 (50%), Gaps = 14/253 (5%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L N ++ M++ C +D AR++FD+M RD WA M+ Y V QE LF M+
Sbjct: 43 LHLANGIVHMYLVCKSVDNARKVFDKMASRDAGLWAPMMAAYARVGHLQEATGLFHRMLD 102
Query: 106 RKKGHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
V P + ++ V+ AC + ++ G++VH + ++ + +L+ Y K
Sbjct: 103 EG------VVPDRVTLLTVINACSESGSLAEGRRVHRRIQGSDFEWSVDVGTALVRMYAK 156
Query: 165 FRCLEDADFVF-SQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSS 223
+++A VF ++L R N V WT + G Q F EM +E + N T+ S
Sbjct: 157 CGSVDEARRVFDNRLLRKNIVSWTTMVSAYVERGCLEQALTLFIEMLQEGVAPNEITYVS 216
Query: 224 VLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
VL AC D + GR++H I + GL+SD +V L+ MY +C L DA VF+ I D
Sbjct: 217 VLNAC-----DLDAGRKVHRLIEQSGLDSDAFVGNALIKMYRRCGSLEDASLVFDGIAD- 270
Query: 284 KNIASWNAMLVGY 296
+N+ WN+M+ GY
Sbjct: 271 RNLLVWNSMIAGY 283
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 70/267 (26%), Positives = 125/267 (46%), Gaps = 11/267 (4%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ +CG+LD A+ +F++M RD SW M+ Y E F + + +GH
Sbjct: 455 LVRMYAACGRLDDAKLVFEKMESRDLISWTTMLGAYTQARLLDEASITFRRI--QLEGHT 512
Query: 112 LLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
P + ++ L AC N+ + H + +LG ++ + +L+ Y LED
Sbjct: 513 ----PDRVALIAALGACT---NLSSARDFHERIRQLGWEKDPLVANALLEVYSACGSLED 565
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
A+ F + + + W I + R GH + F+ + M + +S T ++V+ +
Sbjct: 566 ANETFDGIGEPSVISWNLLIAAHTRLGHPDRAFDLLRAMELQGHNPDSVTLATVINSRAS 625
Query: 231 VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWN 290
+ G+ +H +I++ G+E D V LV+ YGKC A +F+ + N+ +WN
Sbjct: 626 LQL-FRKGKIIHDSILEAGMEIDSVVATALVNFYGKCGDFATARSIFQGVGAADNVVTWN 684
Query: 291 AMLVGYIRNGLYVEATKFLYLMKASGI 317
+ L Y ++G EA L M G+
Sbjct: 685 STLAAYAQSGHASEALHVLAEMVQQGV 711
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 80/289 (27%), Positives = 138/289 (47%), Gaps = 14/289 (4%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLR-DFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGH 110
L+ M+ CG +D AR++FD LR + SW M+ YV+ ++ +TLF EM++
Sbjct: 150 LVRMYAKCGSVDEARRVFDNRLLRKNIVSWTTMVSAYVERGCLEQALTLFIEMLQEG--- 206
Query: 111 MLLVFPAWII-VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
V P I V VL AC +++ G++VH L+ + G + + +LI Y + LE
Sbjct: 207 ---VAPNEITYVSVLNAC----DLDAGRKVHRLIEQSGLDSDAFVGNALIKMYRRCGSLE 259
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
DA VF + N +VW + I F++M + K + +T +VL AC
Sbjct: 260 DASLVFDGIADRNLLVWNSMIAGYASLNEAQGTLEFFRKMLLDGWKGDKHTLLTVLDACA 319
Query: 230 GVDD-DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
+ + +H V+ GL+SD V LV + + + A+ VF+ + K++A+
Sbjct: 320 KSSTLQASSLQTIHDLAVESGLDSDTLVGTALVKIKSEQGDRKSAKMVFDSL-RAKDLAA 378
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISAS 337
WN M Y ++G +A + MK ++ + + AC++ +S
Sbjct: 379 WNCMFSAYAKHGRLRDAMELQEQMKLDQVRPDKVTFVSILSACTATGSS 427
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 71/296 (23%), Positives = 128/296 (43%), Gaps = 16/296 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK---R 106
N L+ M+ CG L+ A +FD + R+ W MI GY + + Q + F +M+ +
Sbjct: 246 NALIKMYRRCGSLEDASLVFDGIADRNLLVWNSMIAGYASLNEAQGTLEFFRKMLLDGWK 305
Query: 107 KKGHMLLVFPAWIIVCVLKACVCTMNMELG--KQVHGLLFKLGSSRNISLTGSLINFYGK 164
H LL VL AC + ++ + +H L + G + + +L+ +
Sbjct: 306 GDKHTLLT--------VLDACAKSSTLQASSLQTIHDLAVESGLDSDTLVGTALVKIKSE 357
Query: 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
+ A VF L+ + W + G ++M ++++ + TF S+
Sbjct: 358 QGDRKSAKMVFDSLRAKDLAAWNCMFSAYAKHGRLRDAMELQEQMKLDQVRPDKVTFVSI 417
Query: 225 LKAC--GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282
L AC G G++ H I++ G D + LV MY C L DA+ VFE + +
Sbjct: 418 LSACTATGSSLGLETGKKTHEEILEQGYRLDAVLGTALVRMYAACGRLDDAKLVFEKM-E 476
Query: 283 KKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASK 338
+++ SW ML Y + L EA+ ++ G + AC+++S+++
Sbjct: 477 SRDLISWTTMLGAYTQARLLDEASITFRRIQLEGHTPDRVALIAALGACTNLSSAR 532
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 98/223 (43%), Gaps = 8/223 (3%)
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
+ L+AC + GK++H + G +N+ L +++ Y + +++A VF ++
Sbjct: 14 LAASLRAC---HTLPKGKELHAQIVSDGLDKNLHLANGIVHMYLVCKSVDNARKVFDKMA 70
Query: 180 RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC-- 237
+ +W + R GH + F M E + + T +V+ AC + G+
Sbjct: 71 SRDAGLWAPMMAAYARVGHLQEATGLFHRMLDEGVVPDRVTLLTVINACS---ESGSLAE 127
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYI 297
GR++H I E V LV MY KC + +A RVF+ + +KNI SW M+ Y+
Sbjct: 128 GRRVHRRIQGSDFEWSVDVGTALVRMYAKCGSVDEARRVFDNRLLRKNIVSWTTMVSAYV 187
Query: 298 RNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKIN 340
G +A M G+ E + AC + K++
Sbjct: 188 ERGCLEQALTLFIEMLQEGVAPNEITYVSVLNACDLDAGRKVH 230
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 62/282 (21%), Positives = 114/282 (40%), Gaps = 36/282 (12%)
Query: 47 LFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR 106
L N LL ++ +CG L+ A + FD + SW ++I + + L M
Sbjct: 548 LVANALLEVYSACGSLEDANETFDGIGEPSVISWNLLIAAHTRLGHPDRAFDLLRAM--E 605
Query: 107 KKGHMLLVFPAWIIVCVLKACVCTMNM-ELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
+GH P + + + ++ + GK +H + + G + + +L+NFYGK
Sbjct: 606 LQGHN----PDSVTLATVINSRASLQLFRKGKIIHDSILEAGMEIDSVVATALVNFYGKC 661
Query: 166 RCLEDADFVFSQL-KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
A +F + N V W + + + GH + + EM ++ + + TF SV
Sbjct: 662 GDFATARSIFQGVGAADNVVTWNSTLAAYAQSGHASEALHVLAEMVQQGVAPTAVTFVSV 721
Query: 225 LKACGGVDDDGNCGRQMHANIVKIG------LESD-------EYVQCGLVDMYGKCRLLR 271
L CG HA + +G L D E+ C ++D+ + L
Sbjct: 722 LSVCG------------HAGVADVGCHLFSSLRWDYDMDPIPEHYGC-MIDLLARGGWLE 768
Query: 272 DAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMK 313
+A ++ + + + W A+L G +G V+ T M+
Sbjct: 769 EARQLLKTMPTTPDSIKWMALLSGC--HGASVDKTGVFMAMQ 808
>gi|255553021|ref|XP_002517553.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543185|gb|EEF44717.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 653
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 101/337 (29%), Positives = 165/337 (48%), Gaps = 15/337 (4%)
Query: 4 LCLPITTDMYT--CLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQ 61
L + I D+YT C+++ C D E+ H+ R + + +N L+ M+V CG
Sbjct: 195 LWVGIKPDIYTFPCVLRSCGGANDFIRGKEIHCHV-IRFGFETDVSAVNALITMYVKCGC 253
Query: 62 LDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIV 121
+ +AR +FD+M RD SW MI GY + + E + LF +M++ L+ +
Sbjct: 254 VGSARTVFDKMLQRDRISWNAMISGYFENGECVEGLNLFLQMLELSVDPDLMT-----MT 308
Query: 122 CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH 181
V+ AC + LG+++HG + + G ++S+ LI Y ++A+ VFS+ +
Sbjct: 309 SVISACELLGDDRLGREIHGYVVRTGYGNDVSVHSLLIQMYASLGYWKEAEKVFSETECR 368
Query: 182 NTVVWTAKIVNNCREGHF--HQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGR 239
+ V WTA I + EG+ + +K M I + T + VL AC + + G
Sbjct: 369 DVVSWTAMI--SGYEGNLMHDKALETYKNMELAGIVPDEITIACVLSACASLGQL-DLGM 425
Query: 240 QMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRN 299
++H ++GL S V L+DMY KC+ + A VF I D KN+ SW ++++G N
Sbjct: 426 RLHELANRMGLMSFVIVANSLIDMYSKCKCIDKALEVFHCIQD-KNVISWTSIILGLRIN 484
Query: 300 GLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
EA F MK + +LI+ L AC+ I A
Sbjct: 485 NRSFEALSFFRKMKRNLKPNSITLISVLS-ACARIGA 520
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 81/285 (28%), Positives = 138/285 (48%), Gaps = 7/285 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N LL M+V L+ A +F M R+ SW V++ GY + E + L+ M+
Sbjct: 141 NALLSMYVRFSDLNNAWNVFGRMGERNLFSWNVLVGGYAKAGFFDEALCLYHRMLWVGIK 200
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ FP CVL++C + GK++H + + G ++S +LI Y K C+
Sbjct: 201 PDIYTFP-----CVLRSCGGANDFIRGKEIHCHVIRFGFETDVSAVNALITMYVKCGCVG 255
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A VF ++ + + + W A I G + N F +M + + T +SV+ AC
Sbjct: 256 SARTVFDKMLQRDRISWNAMISGYFENGECVEGLNLFLQMLELSVDPDLMTMTSVISACE 315
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ DD GR++H +V+ G +D V L+ MY ++AE+VF + +++ SW
Sbjct: 316 LLGDD-RLGREIHGYVVRTGYGNDVSVHSLLIQMYASLGYWKEAEKVFSE-TECRDVVSW 373
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
AM+ GY N ++ +A + M+ +GI E I + AC+S+
Sbjct: 374 TAMISGYEGNLMHDKALETYKNMELAGIVPDEITIACVLSACASL 418
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 81/282 (28%), Positives = 136/282 (48%), Gaps = 11/282 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ S G A ++F E RD SW MI GY + + + + M +
Sbjct: 345 LIQMYASLGYWKEAEKVFSETECRDVVSWTAMISGYEGNLMHDKALETYKNM------EL 398
Query: 112 LLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
+ P I I CVL AC ++LG ++H L ++G + + SLI+ Y K +C++
Sbjct: 399 AGIVPDEITIACVLSACASLGQLDLGMRLHELANRMGLMSFVIVANSLIDMYSKCKCIDK 458
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
A VF ++ N + WT+ I+ + + F++M R +K NS T SVL AC
Sbjct: 459 ALEVFHCIQDKNVISWTSIILGLRINNRSFEALSFFRKMKR-NLKPNSITLISVLSACAR 517
Query: 231 VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWN 290
+ CG+++HA+ +K + + ++ ++DMY +C L A F L K+++A+WN
Sbjct: 518 IGAL-MCGKEIHAHALKTAMVYEGFLPNAILDMYVRCGKLGLALNQFNLY--KEDVAAWN 574
Query: 291 AMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
++ GY G A + + M S + + L ACS
Sbjct: 575 ILMRGYAEQGQGAMAVELFHKMIESKVNPDDVTYIALLCACS 616
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 98/199 (49%), Gaps = 8/199 (4%)
Query: 141 GLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFH 200
+L L + ++ L +L++ Y +F L +A VF ++ N W + + G F
Sbjct: 126 AVLNSLVNPLSVRLGNALLSMYVRFSDLNNAWNVFGRMGERNLFSWNVLVGGYAKAGFFD 185
Query: 201 QVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGL 260
+ + M IK + YTF VL++CGG +D G+++H ++++ G E+D L
Sbjct: 186 EALCLYHRMLWVGIKPDIYTFPCVLRSCGGANDFIR-GKEIHCHVIRFGFETDVSAVNAL 244
Query: 261 VDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQ 320
+ MY KC + A VF+ ++ + I SWNAM+ GY NG VE M ++
Sbjct: 245 ITMYVKCGCVGSARTVFDKMLQRDRI-SWNAMISGYFENGECVEGLNLFLQM------LE 297
Query: 321 ESLINDLRIACSSISASKI 339
S+ DL S ISA ++
Sbjct: 298 LSVDPDLMTMTSVISACEL 316
>gi|449523774|ref|XP_004168898.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g14850-like [Cucumis sativus]
Length = 606
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 86/265 (32%), Positives = 136/265 (51%), Gaps = 10/265 (3%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+ G L+ A ++FDEMP R+ +W I V ++ + F E++ R G
Sbjct: 152 MYSKLGFLNDAYKVFDEMPHRNLETWNAYISNSVLHGRPEDSVIAFIELL-RVGGK---- 206
Query: 115 FPAWIIVCV-LKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADF 173
P I C L AC + + G Q+HG + + G +N+S++ LI+FYGK +E ++
Sbjct: 207 -PDSITFCXFLNACSDKLGLGPGCQLHGFIIRSGYGQNVSVSNGLIDFYGKCGEVECSEM 265
Query: 174 VFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDD 233
VF ++ N+V W++ I + + F +E I+ + SSVL AC G+ +
Sbjct: 266 VFDRMGERNSVSWSSLIAAYVQNNEEEKASCLFLRARKEDIEPTDFMVSSVLCACAGLSE 325
Query: 234 DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
GR + A VK +E + +V LVDMYGKC + +AE+ F + ++N+ SWNA+L
Sbjct: 326 I-EFGRSVQALAVKACVEQNIFVASALVDMYGKCGSIDNAEQAFNAM-PERNLVSWNALL 383
Query: 294 VGYIRNGLYVEATKFLYLM-KASGI 317
GY G +A L M A+GI
Sbjct: 384 GGYAHQGHANKAVALLEEMTSAAGI 408
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/293 (27%), Positives = 135/293 (46%), Gaps = 10/293 (3%)
Query: 44 PTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEM 103
P L+ N L+ M+ L++A+ + + P R +W +I G V + + F++M
Sbjct: 41 PAFLY-NHLVNMYAKLDHLNSAKLILELAPCRSVVTWTALIAGSVQNGCFVSALLHFSDM 99
Query: 104 MKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYG 163
+ FP CVLKA GKQ+H L K G ++ + S+ + Y
Sbjct: 100 LSDCVRPNDFTFP-----CVLKASTGLRMDTTGKQLHALAVKEGLINDVFVGCSVFDMYS 154
Query: 164 KFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSS 223
K L DA VF ++ N W A I N+ G F E+ R K +S TF
Sbjct: 155 KLGFLNDAYKVFDEMPHRNLETWNAYISNSVLHGRPEDSVIAFIELLRVGGKPDSITFCX 214
Query: 224 VLKACGGVDDDG-NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282
L AC D G G Q+H I++ G + V GL+D YGKC + +E VF+ +
Sbjct: 215 FLNACS--DKLGLGPGCQLHGFIIRSGYGQNVSVSNGLIDFYGKCGEVECSEMVFDRM-G 271
Query: 283 KKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
++N SW++++ Y++N +A+ + I+ + +++ + AC+ +S
Sbjct: 272 ERNSVSWSSLIAAYVQNNEEEKASCLFLRARKEDIEPTDFMVSSVLCACAGLS 324
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/247 (24%), Positives = 110/247 (44%), Gaps = 10/247 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ + CG+++ + +FD M R+ SW+ +I YV + ++ LF K
Sbjct: 248 NGLIDFYGKCGEVECSEMVFDRMGERNSVSWSSLIAAYVQNNEEEKASCLFLRARKED-- 305
Query: 110 HMLLVFPA-WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+ P +++ VL AC +E G+ V L K +NI + +L++ YGK +
Sbjct: 306 ----IEPTDFMVSSVLCACAGLSEIEFGRSVQALAVKACVEQNIFVASALVDMYGKCGSI 361
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSY-TFSSVLKA 227
++A+ F+ + N V W A + +GH ++ +EM SY + L A
Sbjct: 362 DNAEQAFNAMPERNLVSWNALLGGYAHQGHANKAVALLEEMTSAAGIVPSYVSLICALSA 421
Query: 228 CGGVDDDGNCGRQMHANIVKIGLES-DEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
C D + + + G+E E+ C LVD+ G+ ++ A + + I
Sbjct: 422 CSRAGDLKTGMKIFESMKERYGVEPGPEHYAC-LVDLLGRAGMVECAYDFIKRMPFPPTI 480
Query: 287 ASWNAML 293
+ W A+L
Sbjct: 481 SIWGALL 487
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 69/157 (43%), Gaps = 9/157 (5%)
Query: 42 IKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFA 101
++ + + L+ M+ CG +D A Q F+ MP R+ SW ++ GY + + L
Sbjct: 341 VEQNIFVASALVDMYGKCGSIDNAEQAFNAMPERNLVSWNALLGGYAHQGHANKAVALLE 400
Query: 102 EMMKRKKGHMLLVFPAWI-IVCVLKACVCTMNMELGKQV-HGLLFKLGSSRNISLTGSLI 159
EM + P+++ ++C L AC +++ G ++ + + G L+
Sbjct: 401 EMTSAAG-----IVPSYVSLICALSACSRAGDLKTGMKIFESMKERYGVEPGPEHYACLV 455
Query: 160 NFYGKFRCLEDA-DFVFSQLKRHNTVVWTAKIVNNCR 195
+ G+ +E A DF+ +W A ++ CR
Sbjct: 456 DLLGRAGMVECAYDFIKRMPFPPTISIWGA-LLGACR 491
>gi|356511287|ref|XP_003524358.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Glycine max]
Length = 674
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 73/259 (28%), Positives = 134/259 (51%), Gaps = 7/259 (2%)
Query: 61 QLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWII 120
++D+ R+LFD MP+RD SW +I G Y+E + + EM K L ++ +
Sbjct: 148 KIDSVRKLFDRMPVRDVVSWNTVIAGNAQNGMYEEALNMVKEMGKEN-----LRPDSFTL 202
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
+L N+ GK++HG + G +++ + SLI+ Y K +E + F L
Sbjct: 203 SSILPIFTEHANVTKGKEIHGYAIRHGFDKDVFIGSSLIDMYAKCTQVELSVCAFHLLSN 262
Query: 181 HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQ 240
+ + W + I + G F Q F+ M +E++K +FSSV+ AC + N G+Q
Sbjct: 263 RDAISWNSIIAGCVQNGRFDQGLGFFRRMLKEKVKPMQVSFSSVIPACAHL-TALNLGKQ 321
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELI-VDKKNIASWNAMLVGYIRN 299
+HA I+++G + ++++ L+DMY KC ++ A +F I + +++ SW A+++G +
Sbjct: 322 LHAYIIRLGFDDNKFIASSLLDMYAKCGNIKMARYIFNKIEMCDRDMVSWTAIIMGCAMH 381
Query: 300 GLYVEATKFLYLMKASGIQ 318
G ++A M G++
Sbjct: 382 GHALDAVSLFEEMLVDGVK 400
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 111/248 (44%), Gaps = 35/248 (14%)
Query: 114 VFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADF 173
+FP+ +L+A + L + +H + +LG ++ +L+N Y KF
Sbjct: 78 LFPS-----LLRASTLFKHFNLAQSLHAAVIRLGFHFDLYTANALMNMYSKFHPHLSPLH 132
Query: 174 VFSQLKRHN-----------------------TVVWTAKIVNNCREGHFHQVFNDFKEMG 210
F Q RHN V W I N + G + + N KEMG
Sbjct: 133 EFPQ-ARHNHNNKYSVKIDSVRKLFDRMPVRDVVSWNTVIAGNAQNGMYEEALNMVKEMG 191
Query: 211 RERIKKNSYTFSSVLKACGGVDDDGNC--GRQMHANIVKIGLESDEYVQCGLVDMYGKCR 268
+E ++ +S+T SS+L + N G+++H ++ G + D ++ L+DMY KC
Sbjct: 192 KENLRPDSFTLSSILPI---FTEHANVTKGKEIHGYAIRHGFDKDVFIGSSLIDMYAKCT 248
Query: 269 LLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLR 328
+ + F L+ ++ I SWN+++ G ++NG + + F M ++ + + +
Sbjct: 249 QVELSVCAFHLLSNRDAI-SWNSIIAGCVQNGRFDQGLGFFRRMLKEKVKPMQVSFSSVI 307
Query: 329 IACSSISA 336
AC+ ++A
Sbjct: 308 PACAHLTA 315
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 113/250 (45%), Gaps = 15/250 (6%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ C Q++ + F + RD SW +I G V + + + F M+K K M
Sbjct: 240 LIDMYAKCTQVELSVCAFHLLSNRDAISWNSIIAGCVQNGRFDQGLGFFRRMLKEKVKPM 299
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+ F + V+ AC + LGKQ+H + +LG N + SL++ Y K ++ A
Sbjct: 300 QVSFSS-----VIPACAHLTALNLGKQLHAYIIRLGFDDNKFIASSLLDMYAKCGNIKMA 354
Query: 172 DFVFSQLK--RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC- 228
++F++++ + V WTA I+ GH + F+EM + +K F +VL AC
Sbjct: 355 RYIFNKIEMCDRDMVSWTAIIMGCAMHGHALDAVSLFEEMLVDGVKPCYVAFMAVLTACS 414
Query: 229 --GGVDDDGNCGRQMHANI-VKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
G VD+ M + V GLE + D+ G+ L +A + ++
Sbjct: 415 HAGLVDEGWKYFNSMQRDFGVAPGLEH----YAAVADLLGRAGRLEEAYDFISNMGEEPT 470
Query: 286 IASWNAMLVG 295
+ W+ +L
Sbjct: 471 GSVWSTLLAA 480
>gi|297843162|ref|XP_002889462.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297335304|gb|EFH65721.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 608
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 84/254 (33%), Positives = 128/254 (50%), Gaps = 10/254 (3%)
Query: 65 ARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVL 124
AR++FDEMP D W ++ + Y+E + LF M R KG LV VL
Sbjct: 216 ARRVFDEMPEPDVICWTAVLSAFSKNDLYEEALGLFYAM-HRGKG---LVPDGSTFGTVL 271
Query: 125 KACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTV 184
AC ++ GK++HG L G N+ + SL++ YGK + +A VF+ + R N V
Sbjct: 272 TACGNLRRLKQGKEIHGKLITNGIGSNVVVESSLLDMYGKSGSVREARQVFNGMPRKNIV 331
Query: 185 VWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHAN 244
W+A + C+ G + F+EM +K+ Y F +VLKAC G+ G+++H
Sbjct: 332 SWSALLGGYCQNGEHEKAIEMFREME----EKDLYCFGTVLKACAGLAAV-RLGKEIHGQ 386
Query: 245 IVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVE 304
V+ G + V+ L+D+YGK + A RV+ + +N+ +WNAML +NG E
Sbjct: 387 YVRRGCFGNVIVESALIDLYGKSGCIDYASRVYSKM-SVRNMITWNAMLSALAQNGRGEE 445
Query: 305 ATKFLYLMKASGIQ 318
A F M GI+
Sbjct: 446 AVSFFNDMVKKGIK 459
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 79/293 (26%), Positives = 147/293 (50%), Gaps = 13/293 (4%)
Query: 50 NRLLLMHVSCGQ-LDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
N LL ++ G + R++FD M ++D SW M+ GYV ++ + + +F EM+
Sbjct: 99 NSLLSLYFKLGPDMRETRRVFDGMFVKDAISWTSMMSGYVASKEHVKALEVFVEMVS--- 155
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
L + + +KAC + LG+ HG++ G N ++ +L YG +
Sbjct: 156 --FGLQPNKFTLSSAVKACFELGEVRLGRCFHGVVITHGFEWNHVISSTLAYMYGVNKEP 213
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRER-IKKNSYTFSSVLKA 227
DA VF ++ + + WTA + + + + F M R + + + TF +VL A
Sbjct: 214 VDARRVFDEMPEPDVICWTAVLSAFSKNDLYEEALGLFYAMHRGKGLVPDGSTFGTVLTA 273
Query: 228 CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
CG + G+++H ++ G+ S+ V+ L+DMYGK +R+A +VF + +KNI
Sbjct: 274 CGNLRRLKQ-GKEIHGKLITNGIGSNVVVESSLLDMYGKSGSVREARQVFNGM-PRKNIV 331
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKIN 340
SW+A+L GY +NG + +A + M+ + +++ AC+ ++A ++
Sbjct: 332 SWSALLGGYCQNGEHEKAIEMFREMEEKDLYCFGTVLK----ACAGLAAVRLG 380
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 67/255 (26%), Positives = 128/255 (50%), Gaps = 13/255 (5%)
Query: 41 NIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLF 100
I ++ + LL M+ G + ARQ+F+ MP ++ SW+ ++ GY ++++ I +F
Sbjct: 294 GIGSNVVVESSLLDMYGKSGSVREARQVFNGMPRKNIVSWSALLGGYCQNGEHEKAIEMF 353
Query: 101 AEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLIN 160
EM ++ + VLKAC + LGK++HG + G N+ + +LI+
Sbjct: 354 REMEEKD---------LYCFGTVLKACAGLAAVRLGKEIHGQYVRRGCFGNVIVESALID 404
Query: 161 FYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYT 220
YGK C++ A V+S++ N + W A + + G + + F +M ++ IK + +
Sbjct: 405 LYGKSGCIDYASRVYSKMSVRNMITWNAMLSALAQNGRGEEAVSFFNDMVKKGIKPDYIS 464
Query: 221 FSSVLKACG--GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE 278
F +VL ACG G+ ++G + A I ++ Y C ++D+ G+ L +AE + +
Sbjct: 465 FIAVLTACGHTGLVEEGRNYFALMAKSYGIKPGTEHY-SC-MIDLLGRAGLFEEAENLLD 522
Query: 279 LIVDKKNIASWNAML 293
+ + + W +L
Sbjct: 523 RAECRNDASLWGVLL 537
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 77/167 (46%), Gaps = 14/167 (8%)
Query: 177 QLKRHNTVVWT-----------AKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
Q RH ++ T ++I+ C+ G I S ++S+L
Sbjct: 8 QFSRHASLCLTPSNSSSAPTKQSRILELCKLGQLTDAIRILNSTHSSEISAKSNLYASLL 67
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRL-LRDAERVFELIVDKK 284
+ C V + G Q HA++VK GLE+D V L+ +Y K +R+ RVF+ + K
Sbjct: 68 QTCRKVFSFIH-GLQFHAHVVKSGLETDRNVGNSLLSLYFKLGPDMRETRRVFDGMFVKD 126
Query: 285 NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
I SW +M+ GY+ + +V+A + M + G+Q + ++ AC
Sbjct: 127 AI-SWTSMMSGYVASKEHVKALEVFVEMVSFGLQPNKFTLSSAVKAC 172
>gi|356519174|ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18485-like [Glycine max]
Length = 975
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 86/287 (29%), Positives = 142/287 (49%), Gaps = 7/287 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMM-KRKK 108
N L+ M+ CG +++A ++F+ M R+ SW ++ + + EC +F ++ ++
Sbjct: 234 NALIAMYGKCGFVESAVKVFETMRNRNLVSWNSVMYACSENGGFGECCGVFKRLLISEEE 293
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
G LV +V V+ AC + +G VHGL FKLG + +++ SL++ Y K L
Sbjct: 294 G---LVPDVATMVTVIPACAAVGEVRMGMVVHGLAFKLGITEEVTVNNSLVDMYSKCGYL 350
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGR-ERIKKNSYTFSSVLKA 227
+A +F N V W I +EG F VF +EM R E+++ N T +VL A
Sbjct: 351 GEARALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQREEKVRVNEVTVLNVLPA 410
Query: 228 CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
C G + +++H + G DE V V Y KC L AERVF ++ K ++
Sbjct: 411 CSGEHQLLSL-KEIHGYAFRHGFLKDELVANAFVAAYAKCSSLDCAERVF-CGMEGKTVS 468
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
SWNA++ + +NG ++ +M SG+ I L +AC+ +
Sbjct: 469 SWNALIGAHAQNGFPGKSLDLFLVMMDSGMDPDRFTIGSLLLACARL 515
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 84/329 (25%), Positives = 153/329 (46%), Gaps = 10/329 (3%)
Query: 8 ITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQ 67
I+ + L++ C K+ ++ + ++ ++ R++ M+ +CG +R
Sbjct: 90 ISKEAIGILLRACGHHKNIHVGRKVHALVSASHKLRNDVVLSTRIIAMYSACGSPSDSRG 149
Query: 68 LFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKAC 127
+FD +D + ++ GY A +++ I+LF E++ L + + CV KAC
Sbjct: 150 VFDAAKEKDLFLYNALLSGYSRNALFRDAISLFLELLSATD----LAPDNFTLPCVAKAC 205
Query: 128 VCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWT 187
++ELG+ VH L K G + + +LI YGK +E A VF ++ N V W
Sbjct: 206 AGVADVELGEAVHALALKAGGFSDAFVGNALIAMYGKCGFVESAVKVFETMRNRNLVSWN 265
Query: 188 AKIVNNCREGHFHQVFNDFKEM---GRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHAN 244
+ + G F + FK + E + + T +V+ AC V + G +H
Sbjct: 266 SVMYACSENGGFGECCGVFKRLLISEEEGLVPDVATMVTVIPACAAVGEV-RMGMVVHGL 324
Query: 245 IVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVE 304
K+G+ + V LVDMY KC L +A +F++ KN+ SWN ++ GY + G +
Sbjct: 325 AFKLGITEEVTVNNSLVDMYSKCGYLGEARALFDM-NGGKNVVSWNTIIWGYSKEGDFRG 383
Query: 305 ATKFLYLM-KASGIQIQESLINDLRIACS 332
+ L M + +++ E + ++ ACS
Sbjct: 384 VFELLQEMQREEKVRVNEVTVLNVLPACS 412
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 80/301 (26%), Positives = 146/301 (48%), Gaps = 6/301 (1%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
++ I + N L+ M+ CG L AR LFD ++ SW +I GY D++
Sbjct: 327 KLGITEEVTVNNSLVDMYSKCGYLGEARALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFE 386
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
L EM + +K + V ++ VL AC + K++HG F+ G ++ + +
Sbjct: 387 LLQEMQREEKVRVNEV----TVLNVLPACSGEHQLLSLKEIHGYAFRHGFLKDELVANAF 442
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
+ Y K L+ A+ VF ++ W A I + + G + + F M + +
Sbjct: 443 VAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAHAQNGFPGKSLDLFLVMMDSGMDPDR 502
Query: 219 YTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE 278
+T S+L AC + CG+++H +++ GLE DE++ L+ +Y +C + + +F+
Sbjct: 503 FTIGSLLLACARLKFL-RCGKEIHGFMLRNGLELDEFIGISLMSLYIQCSSMLLGKLIFD 561
Query: 279 LIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASK 338
+ + K++ WN M+ G+ +N L EA M + GI+ QE + + ACS +SA +
Sbjct: 562 KM-ENKSLVCWNVMITGFSQNELPCEALDTFRQMLSGGIKPQEIAVTGVLGACSQVSALR 620
Query: 339 I 339
+
Sbjct: 621 L 621
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 69/286 (24%), Positives = 129/286 (45%), Gaps = 7/286 (2%)
Query: 47 LFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR 106
L N + + C LD A ++F M + +SW +I + + + LF MM
Sbjct: 437 LVANAFVAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAHAQNGFPGKSLDLFLVMMDS 496
Query: 107 KKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166
+ + I +L AC + GK++HG + + G + + SL++ Y +
Sbjct: 497 G-----MDPDRFTIGSLLLACARLKFLRCGKEIHGFMLRNGLELDEFIGISLMSLYIQCS 551
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
+ +F +++ + V W I + + + F++M IK + VL
Sbjct: 552 SMLLGKLIFDKMENKSLVCWNVMITGFSQNELPCEALDTFRQMLSGGIKPQEIAVTGVLG 611
Query: 227 ACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
AC V G+++H+ +K L D +V C L+DMY KC + ++ +F+ V++K+
Sbjct: 612 ACSQVSAL-RLGKEVHSFALKAHLSEDAFVTCALIDMYAKCGCMEQSQNIFDR-VNEKDE 669
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
A WN ++ GY +G ++A + LM+ G + + IAC+
Sbjct: 670 AVWNVIIAGYGIHGHGLKAIELFELMQNKGGRPDSFTFLGVLIACN 715
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/247 (26%), Positives = 114/247 (46%), Gaps = 15/247 (6%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ +++ C + + +FD+M + W VMI G+ E + F +M+
Sbjct: 543 LMSLYIQCSSMLLGKLIFDKMENKSLVCWNVMITGFSQNELPCEALDTFRQMLSGG---- 598
Query: 112 LLVFPAWIIVC-VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
+ P I V VL AC + LGK+VH K S + +T +LI+ Y K C+E
Sbjct: 599 --IKPQEIAVTGVLGACSQVSALRLGKEVHSFALKAHLSEDAFVTCALIDMYAKCGCMEQ 656
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC-- 228
+ +F ++ + VW I GH + F+ M + + +S+TF VL AC
Sbjct: 657 SQNIFDRVNEKDEAVWNVIIAGYGIHGHGLKAIELFELMQNKGGRPDSFTFLGVLIACNH 716
Query: 229 GGVDDDG--NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
G+ +G G+ + VK L E+ C +VDM G+ L +A ++ + D+ +
Sbjct: 717 AGLVTEGLKYLGQMQNLYGVKPKL---EHYAC-VVDMLGRAGQLTEALKLVNEMPDEPDS 772
Query: 287 ASWNAML 293
W+++L
Sbjct: 773 GIWSSLL 779
>gi|357136755|ref|XP_003569969.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20770-like [Brachypodium distachyon]
Length = 805
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 86/296 (29%), Positives = 139/296 (46%), Gaps = 13/296 (4%)
Query: 43 KPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAE 102
+P N L G LD AR L DEMP R+ SW +I E + L+
Sbjct: 71 RPNAYSYNAALSAARRAGDLDAARALLDEMPDRNVVSWNTVIAALARSERAGEALELYEG 130
Query: 103 MMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFY 162
M++ LV + + VL AC ++ G++ HGL K+G N+ + +L+ Y
Sbjct: 131 MLREG-----LVPTHFTLASVLSACGAVAALDDGRRCHGLAVKVGLDENLFVENALLGMY 185
Query: 163 GKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFS 222
K +EDA +F + N V +TA + + G F M R ++ + S
Sbjct: 186 TKCGGVEDAVRLFDGMASPNEVSFTAMMGGLVQAGSVDDALRLFARMCRSGVRVDPVAVS 245
Query: 223 SVLKACG-------GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAER 275
SVL +C V G+ +HA IV+ G SD++V L+DMY KC + +A +
Sbjct: 246 SVLGSCAQACASEFDVVRAFRLGQCIHALIVRKGFGSDQHVGNSLIDMYTKCMQMDEAVK 305
Query: 276 VFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
VF+ + + + SWN ++ G+ + G Y +A + L LM+ SG + E +++ +C
Sbjct: 306 VFDSLPNISTV-SWNILITGFGQAGSYAKALEVLNLMEESGSEPNEVTYSNMLASC 360
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 79/308 (25%), Positives = 142/308 (46%), Gaps = 9/308 (2%)
Query: 6 LP-ITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDT 64
LP I+T + LI A A E+LN + + +P + + +L + + +
Sbjct: 310 LPNISTVSWNILITGFGQAGSYAKALEVLN-LMEESGSEPNEVTYSNMLASCIKARDVLS 368
Query: 65 ARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVL 124
AR +FD++ +W ++ GY +Q+ + LF R+ H + + +L
Sbjct: 369 ARAMFDKISRPSVTTWNTLLSGYCQEELHQDTVELF-----RRMQHQNVQPDRTTLAVIL 423
Query: 125 KACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTV 184
+C ++LG QVH + ++ + L++ Y K + A +F+++ + V
Sbjct: 424 SSCSRLGILDLGTQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARIIFNRMTERDVV 483
Query: 185 VWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHAN 244
W + I + F+ FK+M + +++S++ +C + GRQ+HA
Sbjct: 484 CWNSMISGLAIHSLNEEAFDFFKQMRGNGMMPTESSYASMINSCARLSSVPQ-GRQIHAQ 542
Query: 245 IVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVE 304
IVK G + + YV L+DMY KC + DA F+ +V KNI +WN M+ GY +NG +
Sbjct: 543 IVKDGYDQNVYVGSALIDMYAKCGNMDDARVFFDCMV-TKNIVAWNEMIHGYAQNGFGEK 601
Query: 305 ATKFLYLM 312
A M
Sbjct: 602 AVDLFEYM 609
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 90/387 (23%), Positives = 155/387 (40%), Gaps = 83/387 (21%)
Query: 28 GAFELLNHIRK------RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWA 81
GA L+ R+ +V + L N LL M+ CG ++ A +LFD M + S+
Sbjct: 151 GAVAALDDGRRCHGLAVKVGLDENLFVENALLGMYTKCGGVEDAVRLFDGMASPNEVSFT 210
Query: 82 VMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNM----ELGK 137
M+ G V + + LFA M R + V + ++ +AC ++ LG+
Sbjct: 211 AMMGGLVQAGSVDDALRLFARMC-RSGVRVDPVAVSSVLGSCAQACASEFDVVRAFRLGQ 269
Query: 138 QVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREG 197
+H L+ + G + + SLI+ Y K +++A VF L +TV W I + G
Sbjct: 270 CIHALIVRKGFGSDQHVGNSLIDMYTKCMQMDEAVKVFDSLPNISTVSWNILITGFGQAG 329
Query: 198 HFH---QVFNDFKEMGRERIKKNSYTFSSVLKACGGVDD--------------------- 233
+ +V N +E G E N T+S++L +C D
Sbjct: 330 SYAKALEVLNLMEESGSE---PNEVTYSNMLASCIKARDVLSARAMFDKISRPSVTTWNT 386
Query: 234 --DGNCGRQMHANIV--------------------------KIGL--------------- 250
G C ++H + V ++G+
Sbjct: 387 LLSGYCQEELHQDTVELFRRMQHQNVQPDRTTLAVILSSCSRLGILDLGTQVHSASVRFL 446
Query: 251 -ESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFL 309
+D +V GLVDMY KC + A +F + + +++ WN+M+ G + L EA F
Sbjct: 447 LHNDMFVASGLVDMYSKCGQIGIARIIFNRMTE-RDVVCWNSMISGLAIHSLNEEAFDFF 505
Query: 310 YLMKASGIQIQESLINDLRIACSSISA 336
M+ +G+ ES + +C+ +S+
Sbjct: 506 KQMRGNGMMPTESSYASMINSCARLSS 532
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 87/175 (49%), Gaps = 6/175 (3%)
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
L+ A + ++ N V W I R + ++ M RE + +T +SVL A
Sbjct: 90 LDAARALLDEMPDRNVVSWNTVIAALARSERAGEALELYEGMLREGLVPTHFTLASVLSA 149
Query: 228 CGGVD--DDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
CG V DDG R+ H VK+GL+ + +V+ L+ MY KC + DA R+F+ +
Sbjct: 150 CGAVAALDDG---RRCHGLAVKVGLDENLFVENALLGMYTKCGGVEDAVRLFDGMASPNE 206
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKIN 340
+ S+ AM+ G ++ G +A + M SG+++ ++ + +C+ AS+ +
Sbjct: 207 V-SFTAMMGGLVQAGSVDDALRLFARMCRSGVRVDPVAVSSVLGSCAQACASEFD 260
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 107/246 (43%), Gaps = 11/246 (4%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ CGQ+ AR +F+ M RD W MI G + +E F +M R G M
Sbjct: 457 LVDMYSKCGQIGIARIIFNRMTERDVVCWNSMISGLAIHSLNEEAFDFFKQM--RGNG-M 513
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+ ++ ++ +C ++ G+Q+H + K G +N+ + +LI+ Y K ++DA
Sbjct: 514 MPTESSY--ASMINSCARLSSVPQGRQIHAQIVKDGYDQNVYVGSALIDMYAKCGNMDDA 571
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--- 228
F + N V W I + G + + F+ M + + TF +VL C
Sbjct: 572 RVFFDCMVTKNIVAWNEMIHGYAQNGFGEKAVDLFEYMLTTEQRPDGVTFIAVLTGCSHS 631
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
G VD+ M + L E+ C L+D G+ L + E + + + K +
Sbjct: 632 GLVDEAIAFFNSMESTYGITPLA--EHYTC-LIDGLGRAGRLVEVEALIDNMPCKDDPIV 688
Query: 289 WNAMLV 294
W +L
Sbjct: 689 WEVLLA 694
>gi|297738569|emb|CBI27814.3| unnamed protein product [Vitis vinifera]
Length = 555
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 81/274 (29%), Positives = 136/274 (49%), Gaps = 11/274 (4%)
Query: 47 LFLNRLLLMHVSC--GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMM 104
L L+ L++ C +D AR++FD+MP RD W +I GY D +E + L++ M
Sbjct: 61 LLLSTKLIITACCLAPTMDYARKMFDQMPKRDVFLWNTLIRGYADAGPCEEALALYSNM- 119
Query: 105 KRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYG 163
H +FP + V+++C + GK+VH + K G ++ + SL+ Y
Sbjct: 120 -----HGAGLFPDNYTFPFVVRSCAVLSALREGKEVHCNIVKHGFDSDVFVQSSLVAMYS 174
Query: 164 KFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSS 223
+ + VF ++ N V WTA I + +F + F+EM + N+ T S
Sbjct: 175 QSGETLGMELVFGEMVVRNIVSWTAVIAGYVQNRYFKEGLGVFREMVGSGTQPNAVTLVS 234
Query: 224 VLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
VL AC G++ N G+ +H +K+G++ D + L+ +YGKC + A +F+ +V
Sbjct: 235 VLPACAGLEFL-NLGKLIHGYGIKLGVDPDVSLTNALIALYGKCGNVETARSLFDGMV-V 292
Query: 284 KNIASWNAMLVGYIRNGLYVEATKFLYLMKASGI 317
+N+ SWNAM+ Y +N A K M+A +
Sbjct: 293 QNLVSWNAMIAAYEQNNAGANAVKLFRRMQAEKV 326
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 93/200 (46%), Gaps = 5/200 (2%)
Query: 137 KQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED-ADFVFSQLKRHNTVVWTAKIVNNCR 195
++H L+ G +N+ L+ LI D A +F Q+ + + +W I
Sbjct: 46 SRIHALVVTNGCGQNLLLSTKLIITACCLAPTMDYARKMFDQMPKRDVFLWNTLIRGYAD 105
Query: 196 EGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEY 255
G + + M + ++YTF V+++C V G+++H NIVK G +SD +
Sbjct: 106 AGPCEEALALYSNMHGAGLFPDNYTFPFVVRSCA-VLSALREGKEVHCNIVKHGFDSDVF 164
Query: 256 VQCGLVDMYGKCRLLRDAERVF-ELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKA 314
VQ LV MY + E VF E++V +NI SW A++ GY++N + E M
Sbjct: 165 VQSSLVAMYSQSGETLGMELVFGEMVV--RNIVSWTAVIAGYVQNRYFKEGLGVFREMVG 222
Query: 315 SGIQIQESLINDLRIACSSI 334
SG Q + + AC+ +
Sbjct: 223 SGTQPNAVTLVSVLPACAGL 242
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/257 (22%), Positives = 100/257 (38%), Gaps = 51/257 (19%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
++ + P + N L+ ++ CG ++TAR LFD M +++ SW MI Y +
Sbjct: 257 KLGVDPDVSLTNALIALYGKCGNVETARSLFDGMVVQNLVSWNAMIAAYEQNNAGANAVK 316
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
LF M K + F +V V+ A +
Sbjct: 317 LFRRMQAEK-----VDFDYITMVSVISAYL------------------------------ 341
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
A VF +L + V WT+ I GH F M E +K NS
Sbjct: 342 ------------AREVFERLPCRSVVSWTSMIGACASHGHGEDALKLFSRMKDEGVKPNS 389
Query: 219 YTFSSVLKAC--GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERV 276
+TF++V AC G+ ++G + I + E+ C +VD+ G+ L +A
Sbjct: 390 FTFAAVFTACRHSGLVEEGRKHFESMMRDYSI-MPGVEHCAC-MVDLLGRAGSLMEAYEF 447
Query: 277 FELIVDKKNIASWNAML 293
+ + + +++ W A+L
Sbjct: 448 IDKMPVEPDVSVWGALL 464
>gi|297850056|ref|XP_002892909.1| hypothetical protein ARALYDRAFT_889039 [Arabidopsis lyrata subsp.
lyrata]
gi|297338751|gb|EFH69168.1| hypothetical protein ARALYDRAFT_889039 [Arabidopsis lyrata subsp.
lyrata]
Length = 1038
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/288 (28%), Positives = 155/288 (53%), Gaps = 10/288 (3%)
Query: 42 IKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFA 101
++ ++L N L+ M+ G++ AR LFD+MP+R+ SW M+ G V V Y E + F
Sbjct: 89 VRLSVLHTNTLINMYTKFGRVKPARYLFDKMPVRNEVSWNTMMSGIVRVGLYLEGMEFFQ 148
Query: 102 EMMKRKKGHMLLVFPA-WIIVCVLKACVCTMNM-ELGKQVHGLLFKLGSSRNISLTGSLI 159
+M L + P+ ++I ++ AC + +M G QVHG + K G ++ ++ +++
Sbjct: 149 KMCD------LGIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAIL 202
Query: 160 NFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSY 219
+ YG + + + VF ++ N V WT+ +V +G +V + +K M E ++ N
Sbjct: 203 HLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKSMRGEGVECNEN 262
Query: 220 TFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFEL 279
+ S V+ +CG + D+ + GRQ+ ++K GLES V+ L+ M+G + A +F
Sbjct: 263 SMSLVISSCGLLKDE-SLGRQIIGQVIKSGLESKLAVENSLISMFGNMGNVDYANYIFNQ 321
Query: 280 IVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDL 327
I ++ I SWN+++ Y +NG E+++ LM+ ++ + ++ L
Sbjct: 322 ISERDTI-SWNSIVAAYAQNGHIEESSRIFNLMRRFHDEVNSTTVSTL 368
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/272 (27%), Positives = 128/272 (47%), Gaps = 6/272 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N LL M+ G+ + A +F +MP +D SW ++ +V+ + + + M++ K
Sbjct: 401 NTLLRMYAGAGRSEEADLVFKQMPTKDLISWNSLMASFVNDGRSLDALGILCSMIRTGKS 460
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ F + L AC + G+ +HGL+ G N + +L++ YGK +
Sbjct: 461 VNYVTFTS-----ALAACFSPEFFDKGRILHGLVVVSGLFDNQIIGNALVSMYGKIGGMS 515
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
+ V Q+ R + V W A I + F+ + E + N T SVL AC
Sbjct: 516 TSRRVLLQMPRRDVVAWNALIGGYAENEDPDKALAAFQTLRVEGVSANYITVVSVLSACL 575
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
D G+ +HA IV G ESDE+V+ L+ MY KC L ++ +F + D ++I +W
Sbjct: 576 VPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGL-DNRSIITW 634
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQE 321
NA+L +G E K + M++ G+ + +
Sbjct: 635 NAILAANAHHGHGEEVLKLVSKMRSFGLSLDQ 666
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 74/274 (27%), Positives = 137/274 (50%), Gaps = 7/274 (2%)
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI 119
G + +R++F+EMP R+ SW ++VGY D + +E I ++ M R +G +
Sbjct: 209 GLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKSM--RGEG---VECNENS 263
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
+ V+ +C + LG+Q+ G + K G +++ SLI+ +G ++ A+++F+Q+
Sbjct: 264 MSLVISSCGLLKDESLGRQIIGQVIKSGLESKLAVENSLISMFGNMGNVDYANYIFNQIS 323
Query: 180 RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGR 239
+T+ W + + + GH + F M R + NS T S++L G VD GR
Sbjct: 324 ERDTISWNSIVAAYAQNGHIEESSRIFNLMRRFHDEVNSTTVSTLLSVLGDVDHQ-KWGR 382
Query: 240 QMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRN 299
+H +VK+G +S V L+ MY +A+ VF+ + K++ SWN+++ ++ +
Sbjct: 383 GIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSEEADLVFKQM-PTKDLISWNSLMASFVND 441
Query: 300 GLYVEATKFLYLMKASGIQIQESLINDLRIACSS 333
G ++A L M +G + AC S
Sbjct: 442 GRSLDALGILCSMIRTGKSVNYVTFTSALAACFS 475
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 77/287 (26%), Positives = 134/287 (46%), Gaps = 14/287 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ G + T+R++ +MP RD +W +I GY + D + + F + R +G
Sbjct: 502 NALVSMYGKIGGMSTSRRVLLQMPRRDVVAWNALIGGYAENEDPDKALAAFQTL--RVEG 559
Query: 110 HMLLVFPAWI-IVCVLKACVCTMNM-ELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
V +I +V VL AC+ ++ E GK +H + G + + SLI Y K
Sbjct: 560 ----VSANYITVVSVLSACLVPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGD 615
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
L + +F+ L + + W A + N GH +V +M + + ++FS L A
Sbjct: 616 LSSSQDLFNGLDNRSIITWNAILAANAHHGHGEEVLKLVSKMRSFGLSLDQFSFSEGLSA 675
Query: 228 CG--GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
V ++ G+Q+H VK+G E D ++ DMY KC + + ++ V+ ++
Sbjct: 676 AAKLAVLEE---GQQLHGLAVKLGFELDCFIFNAAADMYSKCGEIGEVVKMLPPSVN-RS 731
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+ SWN ++ R+G + E + + M GI+ L ACS
Sbjct: 732 LPSWNILISALGRHGYFEEVCETFHEMLEMGIKPGHVTFVSLLTACS 778
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 98/198 (49%), Gaps = 4/198 (2%)
Query: 136 GKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCR 195
G+ +H L K ++ T +LIN Y KF ++ A ++F ++ N V W + R
Sbjct: 77 GRALHALCVKGLVRLSVLHTNTLINMYTKFGRVKPARYLFDKMPVRNEVSWNTMMSGIVR 136
Query: 196 EGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEY 255
G + + F++M IK +S+ +S++ ACG G Q+H + K GL SD Y
Sbjct: 137 VGLYLEGMEFFQKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVY 196
Query: 256 VQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKAS 315
V ++ +YG L+ + +VFE + D +N+ SW +++VGY G E M+
Sbjct: 197 VSTAILHLYGVYGLVSCSRKVFEEMPD-RNVVSWTSLMVGYSDKGEPEEVIDIYKSMRGE 255
Query: 316 GIQIQESLINDLRIACSS 333
G++ E N + + SS
Sbjct: 256 GVECNE---NSMSLVISS 270
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 106/250 (42%), Gaps = 15/250 (6%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ CG L +++ LF+ + R +W ++ +E + L ++M R G
Sbjct: 604 NSLITMYAKCGDLSSSQDLFNGLDNRSIITWNAILAANAHHGHGEEVLKLVSKM--RSFG 661
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
L F L A +E G+Q+HGL KLG + + + + Y K C E
Sbjct: 662 LSLDQFS---FSEGLSAAAKLAVLEEGQQLHGLAVKLGFELDCFIFNAAADMYSK--CGE 716
Query: 170 DADFV--FSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
+ V + W I R G+F +V F EM IK TF S+L A
Sbjct: 717 IGEVVKMLPPSVNRSLPSWNILISALGRHGYFEEVCETFHEMLEMGIKPGHVTFVSLLTA 776
Query: 228 C--GGVDDDGNCGRQMHANIVKIGLESD-EYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
C GG+ D G M A GLE E+ C ++D+ G+ L +AE + K
Sbjct: 777 CSHGGLVDQGLAYYDMIAK--DFGLEPAIEHCIC-VIDLLGRSGRLAEAETFISKMPMKP 833
Query: 285 NIASWNAMLV 294
N W ++L
Sbjct: 834 NDLVWRSLLA 843
>gi|224113417|ref|XP_002316490.1| predicted protein [Populus trichocarpa]
gi|222865530|gb|EEF02661.1| predicted protein [Populus trichocarpa]
Length = 492
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 84/286 (29%), Positives = 143/286 (50%), Gaps = 13/286 (4%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R+ ++ L N L+ M+ CG + A ++FDE+P R SW +MI V + ++ I
Sbjct: 26 RLGLETDTLTSNMLMNMYSKCGLIRRACKVFDEIPERSMVSWNIMIGTCVQNGEEEKAID 85
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
+F EM +++G F +VC AC ++ +Q+H K ++ + +L
Sbjct: 86 IFLEM--QREGSPCSEFTVSSVVC---ACAAKGDVFFCRQLHAFAIKAVVDADVFVGTAL 140
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQ---VFNDFKEMGRERIK 215
I+ Y K +EDA VF + N V W++ + + + + +F KEMG E
Sbjct: 141 IDVYAKCGSIEDASCVFEGMPERNDVTWSSIVAGFVQNELYEEGLVLFARGKEMGLE--- 197
Query: 216 KNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAER 275
N + SSV++AC G+ GRQ+HA + + G + +V LVDMY KC + +A
Sbjct: 198 NNQFMISSVIRACAGLAALIE-GRQVHAIVCRTGFGPNNFVASALVDMYAKCGSIEEAYV 256
Query: 276 VFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQE 321
+F ++KKN+ WNA++ G+ ++ E M+ +G+Q E
Sbjct: 257 LF-CNIEKKNVVLWNAIISGFAKHACSSEVMNLFEEMQQTGMQPDE 301
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 108/210 (51%), Gaps = 4/210 (1%)
Query: 129 CTMNME--LGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVW 186
C N E GK HG + +LG + + L+N Y K + A VF ++ + V W
Sbjct: 8 CAKNREPITGKACHGQVIRLGLETDTLTSNMLMNMYSKCGLIRRACKVFDEIPERSMVSW 67
Query: 187 TAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIV 246
I + G + + F EM RE + +T SSV+ AC D C RQ+HA +
Sbjct: 68 NIMIGTCVQNGEEEKAIDIFLEMQREGSPCSEFTVSSVVCACAAKGDVFFC-RQLHAFAI 126
Query: 247 KIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEAT 306
K +++D +V L+D+Y KC + DA VFE + ++ ++ +W++++ G+++N LY E
Sbjct: 127 KAVVDADVFVGTALIDVYAKCGSIEDASCVFEGMPERNDV-TWSSIVAGFVQNELYEEGL 185
Query: 307 KFLYLMKASGIQIQESLINDLRIACSSISA 336
K G++ + +I+ + AC+ ++A
Sbjct: 186 VLFARGKEMGLENNQFMISSVIRACAGLAA 215
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/245 (24%), Positives = 119/245 (48%), Gaps = 9/245 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ ++ CG ++ A +F+ MP R+ +W+ ++ G+V Y+E + LFA + M
Sbjct: 140 LIDVYAKCGSIEDASCVFEGMPERNDVTWSSIVAGFVQNELYEEGLVLFA-----RGKEM 194
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
L ++I V++AC + G+QVH ++ + G N + +L++ Y K +E+A
Sbjct: 195 GLENNQFMISSVIRACAGLAALIEGRQVHAIVCRTGFGPNNFVASALVDMYAKCGSIEEA 254
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--G 229
+F +++ N V+W A I + +V N F+EM + ++ + T+ +VL AC
Sbjct: 255 YVLFCNIEKKNVVLWNAIISGFAKHACSSEVMNLFEEMQQTGMQPDEVTYVAVLSACVHV 314
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
G+ D G + + Y C +VD+ G+ L+ +A + + + W
Sbjct: 315 GLVDKGRSYFDLMTREHNVSPNVLHY-SC-MVDILGRGGLVHEAHELMTKMPFAATASMW 372
Query: 290 NAMLV 294
++L
Sbjct: 373 GSLLA 377
>gi|359495457|ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g63370-like [Vitis vinifera]
Length = 993
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 80/269 (29%), Positives = 140/269 (52%), Gaps = 8/269 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ G++ A +F M D SW M+ G+V Y E + + EM +
Sbjct: 357 NALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQK 416
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
L+ ++ ++ A + N G Q+H K G ++ + SL++ Y KF ++
Sbjct: 417 PDLVA-----VISIIAASARSGNTLNGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMK 471
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
D +F ++ + V WT I + + G + F+E+ E I + SS+L AC
Sbjct: 472 YMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACS 531
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
G+ + +++H+ I++ GL SD +Q G+VD+YG+C + A R+FELI + K++ SW
Sbjct: 532 GLKLISSV-KEIHSYIIRKGL-SDLVLQNGIVDVYGECGNVDYAARMFELI-EFKDVVSW 588
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
+M+ Y+ NGL EA + +LMK +G++
Sbjct: 589 TSMISCYVHNGLANEALELFHLMKETGVE 617
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 89/331 (26%), Positives = 158/331 (47%), Gaps = 11/331 (3%)
Query: 6 LPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFL-NRLLLMHVSCGQLDT 64
+P+ + C++K C KD E+ K + +++F+ N ++ M+ C L+
Sbjct: 212 IPLDACTFPCILKACGLLKDRRCGAEVHGLAIKEGYV--SIVFVANSIVGMYTKCNDLNG 269
Query: 65 ARQLFDEMPLR-DFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCV 123
ARQLFD MP + D SW MI Y E + LF EM K L + V
Sbjct: 270 ARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKAS-----LAPNTYTFVAA 324
Query: 124 LKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNT 183
L+AC + ++ G +H + K N+ + +LI Y +F + +A +F + +T
Sbjct: 325 LQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDT 384
Query: 184 VVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHA 243
+ W + + + G +H+ + EM K + S++ A + N G Q+HA
Sbjct: 385 ISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLN-GMQIHA 443
Query: 244 NIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYV 303
+K GL+SD V LVDMY K ++ + +F+ + D K++ SW ++ G+ +NG +
Sbjct: 444 YAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPD-KDVVSWTTIIAGHAQNGSHS 502
Query: 304 EATKFLYLMKASGIQIQESLINDLRIACSSI 334
A + ++ GI + +I+ + +ACS +
Sbjct: 503 RALELFREVQLEGIDLDVMMISSILLACSGL 533
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 92/334 (27%), Positives = 162/334 (48%), Gaps = 15/334 (4%)
Query: 11 DMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFD 70
+ Y+ +++ C +K + ++ H+ + ++ RL+ M+ CG L A +LFD
Sbjct: 115 EAYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFD 174
Query: 71 EMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCT 130
MP + +W MI YV + + L+ EM R G + A C+LKAC
Sbjct: 175 GMPHKTIFTWNAMIGAYVTNGEPLGSLELYREM--RVSG---IPLDACTFPCILKACGLL 229
Query: 131 MNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL-KRHNTVVWTAK 189
+ G +VHGL K G + + S++ Y K L A +F ++ ++ + V W +
Sbjct: 230 KDRRCGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSM 289
Query: 190 IVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQ---MHANIV 246
I G + F EM + + N+YTF + L+AC +D + +Q +HA ++
Sbjct: 290 ISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQAC----EDSSFIKQGMFIHATVL 345
Query: 247 KIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEAT 306
K + +V L+ MY + + +A +F + D I SWN+ML G+++NGLY EA
Sbjct: 346 KSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTI-SWNSMLSGFVQNGLYHEAL 404
Query: 307 KFLYLMKASGIQIQESLINDLRIACSSISASKIN 340
+F + M+ +G + + + IA S+ S + +N
Sbjct: 405 QFYHEMRDAGQKPDLVAVISI-IAASARSGNTLN 437
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 119/252 (47%), Gaps = 13/252 (5%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L+ N ++ ++ CG +D A ++F+ + +D SW MI YV E + LF +MK
Sbjct: 554 LVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELF-HLMK 612
Query: 106 RKKGHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
V P I +V +L A ++ GK++HG L + G SL +L++ Y +
Sbjct: 613 ETG-----VEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMYAR 667
Query: 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
LE + VF+ ++ + V+WT+ I G + F+ M E I + F +V
Sbjct: 668 CGTLEKSRNVFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAV 727
Query: 225 LKAC--GGVDDDGNCGRQMHANIVKIGLES-DEYVQCGLVDMYGKCRLLRDAERVFELIV 281
L AC G+ ++G R + + + LE E+ C LVD+ G+ L +A + + +
Sbjct: 728 LYACSHSGLMNEGR--RFLESMKYEYQLEPWPEHYVC-LVDLLGRANHLEEAYQFVKGME 784
Query: 282 DKKNIASWNAML 293
+ W A+L
Sbjct: 785 VEPTAEVWCALL 796
>gi|225456755|ref|XP_002268980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74600,
chloroplastic [Vitis vinifera]
gi|297733984|emb|CBI15231.3| unnamed protein product [Vitis vinifera]
Length = 893
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/285 (29%), Positives = 141/285 (49%), Gaps = 11/285 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMM--KRK 107
+ L M+ CG L+ + +F++MP +D SWA MI G+ + ++ + LF EM+ + +
Sbjct: 487 SSLFTMYSKCGSLEESYTVFEQMPDKDNVSWASMITGFSEHDHAEQAVQLFREMLLEEIR 546
Query: 108 KGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
M L L AC ++E GK+VHG + + + + G+L+N Y K
Sbjct: 547 PDQMTLT-------AALTACSALHSLEKGKEVHGYALRARVGKEVLVGGALVNMYSKCGA 599
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
+ A VF L + + ++ + + G+ F E+ + +S+T SSV+ A
Sbjct: 600 IVLARRVFDMLPQKDQFSCSSLVSGYAQNGYIEDALLLFHEIRMADLWIDSFTVSSVIGA 659
Query: 228 CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
+ + + G Q+HA + K+GL ++ V LV MY KC + + +VFE I +K ++
Sbjct: 660 V-AILNSLDIGTQLHACVTKMGLNAEVSVGSSLVTMYSKCGSIDECHKVFEQI-EKPDLI 717
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
SW AM+V Y ++G EA K LM+ G + + ACS
Sbjct: 718 SWTAMIVSYAQHGKGAEALKVYDLMRKEGTKPDSVTFVGVLSACS 762
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 80/281 (28%), Positives = 136/281 (48%), Gaps = 11/281 (3%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
++ C +D A + F MP+R+ SW +I G+V D F EM RK G +
Sbjct: 292 LYAKCRDMDQAVKEFLRMPIRNVVSWTTIISGFVQKDDSISAFHFFKEM--RKVGEKI-- 347
Query: 115 FPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFV 174
+ I VL AC + ++ Q+H +FK G + +++ +LIN Y K ++ ++ V
Sbjct: 348 -NNYTITSVLTACTEPVMIKEAVQLHSWIFKTGFYLDSNVSSALINMYSKIGVVDLSERV 406
Query: 175 FSQLKR-HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDD 233
F +++ N +W I + G + F+ M +E ++ + + SSVL + D
Sbjct: 407 FREMESTKNLAMWAVMISAFAQSGSTGRAVELFQRMLQEGLRPDKFCSSSVLS----IID 462
Query: 234 DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
+ GR +H I+KIGL +D V L MY KC L ++ VFE + DK N+ SW +M+
Sbjct: 463 SLSLGRLIHCYILKIGLFTDISVGSSLFTMYSKCGSLEESYTVFEQMPDKDNV-SWASMI 521
Query: 294 VGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
G+ + +A + M I+ + + ACS++
Sbjct: 522 TGFSEHDHAEQAVQLFREMLLEEIRPDQMTLTAALTACSAL 562
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/260 (26%), Positives = 125/260 (48%), Gaps = 12/260 (4%)
Query: 52 LLLMHVSCGQLDTARQLFDEM-PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGH 110
L+ M+ G +D + ++F EM ++ WAVMI + + LF M++ +G
Sbjct: 390 LINMYSKIGVVDLSERVFREMESTKNLAMWAVMISAFAQSGSTGRAVELFQRMLQ--EGL 447
Query: 111 MLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
F + ++ ++ + + LG+ +H + K+G +IS+ SL Y K LE+
Sbjct: 448 RPDKFCSSSVLSIIDS------LSLGRLIHCYILKIGLFTDISVGSSLFTMYSKCGSLEE 501
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
+ VF Q+ + V W + I H Q F+EM E I+ + T ++ L AC
Sbjct: 502 SYTVFEQMPDKDNVSWASMITGFSEHDHAEQAVQLFREMLLEEIRPDQMTLTAALTACSA 561
Query: 231 VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWN 290
+ G+++H ++ + + V LV+MY KC + A RVF+++ K S +
Sbjct: 562 LHSLEK-GKEVHGYALRARVGKEVLVGGALVNMYSKCGAIVLARRVFDMLPQKDQF-SCS 619
Query: 291 AMLVGYIRNGLYVEATKFLY 310
+++ GY +NG Y+E L+
Sbjct: 620 SLVSGYAQNG-YIEDALLLF 638
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 64/259 (24%), Positives = 126/259 (48%), Gaps = 9/259 (3%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R + +L L+ M+ CG + AR++FD +P +D S + ++ GY ++ +
Sbjct: 577 RARVGKEVLVGGALVNMYSKCGAIVLARRVFDMLPQKDQFSCSSLVSGYAQNGYIEDALL 636
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
LF E+ L ++ + V+ A ++++G Q+H + K+G + +S+ SL
Sbjct: 637 LFHEIRMAD-----LWIDSFTVSSVIGAVAILNSLDIGTQLHACVTKMGLNAEVSVGSSL 691
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
+ Y K +++ VF Q+++ + + WTA IV+ + G + + M +E K +S
Sbjct: 692 VTMYSKCGSIDECHKVFEQIEKPDLISWTAMIVSYAQHGKGAEALKVYDLMRKEGTKPDS 751
Query: 219 YTFSSVLKACG--GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERV 276
TF VL AC G+ ++G +++ + G+E Y +VD+ G+ L++AER
Sbjct: 752 VTFVGVLSACSHNGMVEEGY--SHLNSMAKEYGIEPGYYHYACMVDLLGRSGRLKEAERF 809
Query: 277 FELIVDKKNIASWNAMLVG 295
+ + + W +L
Sbjct: 810 INNMPIEPDALLWGILLAA 828
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 77/298 (25%), Positives = 129/298 (43%), Gaps = 7/298 (2%)
Query: 35 HIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQ 94
H K ++ N L+ + + A +LFD+ P + SW ++I G ++
Sbjct: 70 HFLKTAILQSNTFMTNSLMGWYCKSNSMVHALRLFDKTPHPNVISWNILISGCNQNFSFE 129
Query: 95 ECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISL 154
+ F +M R G F VL AC + G+ V+ L K G N +
Sbjct: 130 DSWRNFCKM--RFSGFDPNQF---TYGSVLSACTALGSPLYGELVYSLALKNGFFSNGYV 184
Query: 155 TGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERI 214
+I+ + K EDA VF + N V W A I + + F +M
Sbjct: 185 RAGMIDLFAKLCSFEDALRVFQDVLCENVVCWNAIISGAVKNRENWVALDLFCQMCCRFF 244
Query: 215 KKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAE 274
NS+TFSS+L AC +++ GR + ++K G D +V ++D+Y KCR + A
Sbjct: 245 MPNSFTFSSILTACAALEEL-EFGRGVQGWVIKCGAGEDVFVGTAIIDLYAKCRDMDQAV 303
Query: 275 RVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+ F L + +N+ SW ++ G+++ + A F M+ G +I I + AC+
Sbjct: 304 KEF-LRMPIRNVVSWTTIISGFVQKDDSISAFHFFKEMRKVGEKINNYTITSVLTACT 360
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 118/258 (45%), Gaps = 6/258 (2%)
Query: 61 QLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWII 120
+ A ++F ++ + W +I G V + + LF +M R + ++
Sbjct: 197 SFEDALRVFQDVLCENVVCWNAIISGAVKNRENWVALDLFCQMCCR-----FFMPNSFTF 251
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
+L AC +E G+ V G + K G+ ++ + ++I+ Y K R ++ A F ++
Sbjct: 252 SSILTACAALEELEFGRGVQGWVIKCGAGEDVFVGTAIIDLYAKCRDMDQAVKEFLRMPI 311
Query: 181 HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQ 240
N V WT I ++ F+ FKEM + K N+YT +SVL AC Q
Sbjct: 312 RNVVSWTTIISGFVQKDDSISAFHFFKEMRKVGEKINNYTITSVLTACTEPVMIKE-AVQ 370
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
+H+ I K G D V L++MY K ++ +ERVF + KN+A W M+ + ++G
Sbjct: 371 LHSWIFKTGFYLDSNVSSALINMYSKIGVVDLSERVFREMESTKNLAMWAVMISAFAQSG 430
Query: 301 LYVEATKFLYLMKASGIQ 318
A + M G++
Sbjct: 431 STGRAVELFQRMLQEGLR 448
>gi|302790562|ref|XP_002977048.1| hypothetical protein SELMODRAFT_106624 [Selaginella moellendorffii]
gi|300155024|gb|EFJ21657.1| hypothetical protein SELMODRAFT_106624 [Selaginella moellendorffii]
Length = 883
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 94/339 (27%), Positives = 158/339 (46%), Gaps = 19/339 (5%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVN---IKPTLLFLNRLLLMHV 57
MD+ + + + ++ C+ +D E I R++ + ++ L+ M+
Sbjct: 137 MDSAGIKPDSATLSSVLGACSSLRD----LEEGRRIHGRISSGEFQSGIVVETGLVKMYA 192
Query: 58 SCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPA 117
CG+L AR++FD + +D W MI Y + L EM F
Sbjct: 193 RCGRLREAREVFDRIENKDVICWNSMIAAYAQGGHSAQARQLCEEMEGFGVKASDTTFAG 252
Query: 118 WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQ 177
+L AC ++E GK++H G S +I + +LI+ YGK L+ A VFS+
Sbjct: 253 -----ILGACS---SLEEGKKIHSRALARGLSSSIIVQNALISMYGKCNELDAARRVFSK 304
Query: 178 LKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC 237
++ H+ V WTA IV + G + +K+M E ++ + TF+SVL AC +D
Sbjct: 305 VRAHDVVSWTALIVAYTQHGRNREALELYKQMEGEGMEPDKVTFTSVLSACSNTNDL-EL 363
Query: 238 GRQMHANIV--KIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
G+ +HA ++ K G SD + L++MY KC L + +F+ D K + WNAM+
Sbjct: 364 GQALHARLLARKDGF-SDGVLVAALINMYVKCGRLDLSSEIFQSCKDTKAVVVWNAMITA 422
Query: 296 YIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
Y + G A +MK G+ ES ++ + AC+ +
Sbjct: 423 YEQEGYSRAAVDLYDMMKQRGLDPDESTLSSILSACAEL 461
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 135/285 (47%), Gaps = 12/285 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+ LL M+ CG +D A Q+F +P R SW +I + ++ I +F M
Sbjct: 84 DHLLQMYGKCGSVDDAIQVFHALPRRSLFSWNFIIAAFAKNRHGRKAIEMFRSMDSAG-- 141
Query: 110 HMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+ P + + VL AC ++E G+++HG + I + L+ Y + L
Sbjct: 142 ----IKPDSATLSSVLGACSSLRDLEEGRRIHGRISSGEFQSGIVVETGLVKMYARCGRL 197
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+A VF +++ + + W + I + GH Q +EM +K + TF+ +L AC
Sbjct: 198 REAREVFDRIENKDVICWNSMIAAYAQGGHSAQARQLCEEMEGFGVKASDTTFAGILGAC 257
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
+++ G+++H+ + GL S VQ L+ MYGKC L A RVF V ++ S
Sbjct: 258 SSLEE----GKKIHSRALARGLSSSIIVQNALISMYGKCNELDAARRVFSK-VRAHDVVS 312
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSS 333
W A++V Y ++G EA + M+ G++ + + ACS+
Sbjct: 313 WTALIVAYTQHGRNREALELYKQMEGEGMEPDKVTFTSVLSACSN 357
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 81/300 (27%), Positives = 141/300 (47%), Gaps = 12/300 (4%)
Query: 41 NIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLF 100
+ +++ N L+ M+ C +LD AR++F ++ D SW +IV Y +E + L+
Sbjct: 274 GLSSSIIVQNALISMYGKCNELDAARRVFSKVRAHDVVSWTALIVAYTQHGRNREALELY 333
Query: 101 AEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLF--KLGSSRNISLTGSL 158
+M + F + VL AC T ++ELG+ +H L K G S + L +L
Sbjct: 334 KQMEGEGMEPDKVTFTS-----VLSACSNTNDLELGQALHARLLARKDGFSDGV-LVAAL 387
Query: 159 INFYGKFRCLEDADFVFSQLKRHNT-VVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKN 217
IN Y K L+ + +F K VVW A I +EG+ + + M + + +
Sbjct: 388 INMYVKCGRLDLSSEIFQSCKDTKAVVVWNAMITAYEQEGYSRAAVDLYDMMKQRGLDPD 447
Query: 218 SYTFSSVLKACGGVDDDGNCGRQMHANIVKI-GLESDEYVQCGLVDMYGKCRLLRDAERV 276
T SS+L AC + D G Q+H I+ + V L+ MY C +R+A+ V
Sbjct: 448 ESTLSSILSACAELKDLEK-GEQVHVEIIASRDCSQNPVVLNALISMYASCGEIREAKAV 506
Query: 277 FELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
F+ + + +++ SW ++ Y++ G A + M G+Q E + + ACS++ +
Sbjct: 507 FKRMKN-RDVVSWTILISAYVQGGDARRALRLYRRMLVEGVQPTEVTMLAVIAACSAMES 565
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 104/218 (47%), Gaps = 2/218 (0%)
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
+LK C + G+++H + G + + L L+ YGK ++DA VF L R
Sbjct: 49 AALLKHCGNAAALPQGRRIHAHIVASGLASDGFLGDHLLQMYGKCGSVDDAIQVFHALPR 108
Query: 181 HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQ 240
+ W I + H + F+ M IK +S T SSVL AC + D GR+
Sbjct: 109 RSLFSWNFIIAAFAKNRHGRKAIEMFRSMDSAGIKPDSATLSSVLGACSSLRDLEE-GRR 167
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
+H I +S V+ GLV MY +C LR+A VF+ I + K++ WN+M+ Y + G
Sbjct: 168 IHGRISSGEFQSGIVVETGLVKMYARCGRLREAREVFDRI-ENKDVICWNSMIAAYAQGG 226
Query: 301 LYVEATKFLYLMKASGIQIQESLINDLRIACSSISASK 338
+A + M+ G++ ++ + ACSS+ K
Sbjct: 227 HSAQARQLCEEMEGFGVKASDTTFAGILGACSSLEEGK 264
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 137/292 (46%), Gaps = 14/292 (4%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNS---WAVMIVGYVDVADYQECITLFAEMMKRKK 108
L+ M+V CG+LD + ++F +D + W MI Y + + L+ +MMK++
Sbjct: 387 LINMYVKCGRLDLSSEIFQS--CKDTKAVVVWNAMITAYEQEGYSRAAVDLY-DMMKQRG 443
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVH-GLLFKLGSSRNISLTGSLINFYGKFRC 167
L + +L AC ++E G+QVH ++ S+N + +LI+ Y
Sbjct: 444 ----LDPDESTLSSILSACAELKDLEKGEQVHVEIIASRDCSQNPVVLNALISMYASCGE 499
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
+ +A VF ++K + V WT I + G + ++ M E ++ T +V+ A
Sbjct: 500 IREAKAVFKRMKNRDVVSWTILISAYVQGGDARRALRLYRRMLVEGVQPTEVTMLAVIAA 559
Query: 228 CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
C ++ G +HA + +D VQ L+ MY +CR L A +VF + ++ A
Sbjct: 560 CSAMESLWE-GIVIHA-LTDSMFFTDTAVQAALISMYARCRRLDLACQVFRQVRHLESSA 617
Query: 288 S-WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASK 338
+ WNAML Y + GL E + + M ++GI+ E ACS + A +
Sbjct: 618 NCWNAMLAAYSQLGLPEEGIRLYWEMSSTGIKANEGTFAGALAACSMLGAVR 669
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 124/260 (47%), Gaps = 19/260 (7%)
Query: 47 LFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR 106
+ LN L+ M+ SCG++ A+ +F M RD SW ++I YV D + + L+ M+
Sbjct: 485 VVLNALISMYASCGEIREAKAVFKRMKNRDVVSWTILISAYVQGGDARRALRLYRRMLVE 544
Query: 107 KKGHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
V P + ++ V+ AC ++ G +H L + + + ++ +LI+ Y +
Sbjct: 545 G------VQPTEVTMLAVIAACSAMESLWEGIVIHALTDSMFFT-DTAVQAALISMYARC 597
Query: 166 RCLEDADFVFSQLKRHNTVV--WTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSS 223
R L+ A VF Q++ + W A + + G + + EM IK N TF+
Sbjct: 598 RRLDLACQVFRQVRHLESSANCWNAMLAAYSQLGLPEEGIRLYWEMSSTGIKANEGTFAG 657
Query: 224 VLKAC---GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELI 280
L AC G V + G ++H + SD ++ LV MY KC + A VFE +
Sbjct: 658 ALAACSMLGAVRE----GYRIHEQVSSSRYSSDLSLKTALVHMYAKCNRVDAAFHVFEQL 713
Query: 281 VDKKNIASWNAMLVGYIRNG 300
+ ++ +WNAM+ Y +NG
Sbjct: 714 --QPDVVAWNAMIAAYAQNG 731
>gi|15232006|ref|NP_187516.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207468|sp|Q9SS83.1|PP220_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g09040, mitochondrial; Flags: Precursor
gi|5923669|gb|AAD56320.1|AC009326_7 hypothetical protein [Arabidopsis thaliana]
gi|332641192|gb|AEE74713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 1028
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 97/326 (29%), Positives = 152/326 (46%), Gaps = 11/326 (3%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
+T L+ C D + + I K+ + L N L+ M+ CG L+ ARQ+F+ M
Sbjct: 431 FTSLLSTCAASHDLEMGSQFHSIIIKK-KLAKNLFVGNALVDMYAKCGALEDARQIFERM 489
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN 132
RD +W +I YV + E LF M +V + LKAC
Sbjct: 490 CDRDNVTWNTIIGSYVQDENESEAFDLFKRM-----NLCGIVSDGACLASTLKACTHVHG 544
Query: 133 MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192
+ GKQVH L K G R++ SLI+ Y K ++DA VFS L + V A ++
Sbjct: 545 LYQGKQVHCLSVKCGLDRDLHTGSSLIDMYSKCGIIKDARKVFSSLPEWSVVSMNA-LIA 603
Query: 193 NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLES 252
+ + + F+EM + + TF+++++AC + G Q H I K G S
Sbjct: 604 GYSQNNLEEAVVLFQEMLTRGVNPSEITFATIVEACHK-PESLTLGTQFHGQITKRGFSS 662
Query: 253 D-EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYL 311
+ EY+ L+ MY R + +A +F + K+I W M+ G+ +NG Y EA KF
Sbjct: 663 EGEYLGISLLGMYMNSRGMTEACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALKFYKE 722
Query: 312 MKASGI-QIQESLINDLRIACSSISA 336
M+ G+ Q + + LR+ CS +S+
Sbjct: 723 MRHDGVLPDQATFVTVLRV-CSVLSS 747
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 89/292 (30%), Positives = 131/292 (44%), Gaps = 7/292 (2%)
Query: 43 KPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAE 102
+P L ++ ++ G+L AR LF EM D +W VMI G+ I F
Sbjct: 258 RPDHLAFVTVINTYIRLGKLKDARLLFGEMSSPDVVAWNVMISGHGKRGCETVAIEYFFN 317
Query: 103 MMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFY 162
M K + VL A N++LG VH KLG + NI + SL++ Y
Sbjct: 318 MRKSSVKSTRSTLGS-----VLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMY 372
Query: 163 GKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFS 222
K +E A VF L+ N V W A I G H+V F +M + +TF+
Sbjct: 373 SKCEKMEAAAKVFEALEEKNDVFWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFT 432
Query: 223 SVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282
S+L C D G Q H+ I+K L + +V LVDMY KC L DA ++FE + D
Sbjct: 433 SLLSTCAA-SHDLEMGSQFHSIIIKKKLAKNLFVGNALVDMYAKCGALEDARQIFERMCD 491
Query: 283 KKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
+ N+ +WN ++ Y+++ EA M GI + + AC+ +
Sbjct: 492 RDNV-TWNTIIGSYVQDENESEAFDLFKRMNLCGIVSDGACLASTLKACTHV 542
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 85/286 (29%), Positives = 142/286 (49%), Gaps = 11/286 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+ L+ M+ CG + AR++F +P S +I GY + +E + LF EM+ R
Sbjct: 568 SSLIDMYSKCGIIKDARKVFSSLPEWSVVSMNALIAGYSQ-NNLEEAVVLFQEMLTRG-- 624
Query: 110 HMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLG-SSRNISLTGSLINFYGKFRC 167
V P+ I +++AC ++ LG Q HG + K G SS L SL+ Y R
Sbjct: 625 ----VNPSEITFATIVEACHKPESLTLGTQFHGQITKRGFSSEGEYLGISLLGMYMNSRG 680
Query: 168 LEDADFVFSQLKRHNTVV-WTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
+ +A +FS+L ++V WT + + + G + + +KEM + + + TF +VL+
Sbjct: 681 MTEACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGVLPDQATFVTVLR 740
Query: 227 ACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
C V GR +H+ I + + DE L+DMY KC ++ + +VF+ + + N+
Sbjct: 741 VCS-VLSSLREGRAIHSLIFHLAHDLDELTSNTLIDMYAKCGDMKGSSQVFDEMRRRSNV 799
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
SWN+++ GY +NG +A K M+ S I E + ACS
Sbjct: 800 VSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLTACS 845
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 90/187 (48%), Gaps = 3/187 (1%)
Query: 130 TMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAK 189
+ + +GK VH LG L ++++ Y K + A+ F L++ + W +
Sbjct: 73 ALALRIGKAVHSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAEKQFDFLEK-DVTAWNSM 131
Query: 190 IVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIG 249
+ G +V F + +I N +TFS VL C + + GRQ+H +++K+G
Sbjct: 132 LSMYSSIGKPGKVLRSFVSLFENQIFPNKFTFSIVLSTCA-RETNVEFGRQIHCSMIKMG 190
Query: 250 LESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFL 309
LE + Y LVDMY KC + DA RVFE IVD N W + GY++ GL EA
Sbjct: 191 LERNSYCGGALVDMYAKCDRISDARRVFEWIVD-PNTVCWTCLFSGYVKAGLPEEAVLVF 249
Query: 310 YLMKASG 316
M+ G
Sbjct: 250 ERMRDEG 256
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 118/250 (47%), Gaps = 19/250 (7%)
Query: 52 LLLMHVSCGQLDTARQLFDEMP-LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGH 110
LL M+++ + A LF E+ + W M+ G+ Y+E + + EM R G
Sbjct: 671 LLGMYMNSRGMTEACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALKFYKEM--RHDG- 727
Query: 111 MLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
V P V VL+ C ++ G+ +H L+F L + + +LI+ Y K ++
Sbjct: 728 ---VLPDQATFVTVLRVCSVLSSLREGRAIHSLIFHLAHDLDELTSNTLIDMYAKCGDMK 784
Query: 170 DADFVFSQLKRHNTVV-WTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+ VF +++R + VV W + I + G+ F M + I + TF VL AC
Sbjct: 785 GSSQVFDEMRRRSNVVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLTAC 844
Query: 229 ---GGVDDDGNCGRQMHANIV-KIGLESD-EYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
G V D GR++ ++ + G+E+ ++V C +VD+ G+ L++A+ E K
Sbjct: 845 SHAGKVSD----GRKIFEMMIGQYGIEARVDHVAC-MVDLLGRWGYLQEADDFIEAQNLK 899
Query: 284 KNIASWNAML 293
+ W+++L
Sbjct: 900 PDARLWSSLL 909
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 59/279 (21%), Positives = 114/279 (40%), Gaps = 45/279 (16%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N ++ ++ C Q+ A + FD + +D +W M+ Y + + + F + + +
Sbjct: 99 NAIVDLYAKCAQVSYAEKQFDFLE-KDVTAWNSMLSMYSSIGKPGKVLRSFVSLFENQ-- 155
Query: 110 HMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+FP + VL C N+E G+Q+H + K+G RN G+L++ Y K +
Sbjct: 156 ----IFPNKFTFSIVLSTCARETNVEFGRQIHCSMIKMGLERNSYCGGALVDMYAKCDRI 211
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
DA VF + NTV WT + G + F+ M E + + F +V+
Sbjct: 212 SDARRVFEWIVDPNTVCWTCLFSGYVKAGLPEEAVLVFERMRDEGHRPDHLAFVTVI--- 268
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
+ Y++ G L+DA +F + ++ +
Sbjct: 269 ------------------------NTYIRLG---------KLKDARLLFGEM-SSPDVVA 294
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDL 327
WN M+ G+ + G A ++ + M+ S ++ S + +
Sbjct: 295 WNVMISGHGKRGCETVAIEYFFNMRKSSVKSTRSTLGSV 333
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 76/150 (50%), Gaps = 11/150 (7%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLR-DFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
N L+ M+ CG + + Q+FDEM R + SW +I GY ++ + +F M ++
Sbjct: 771 NTLIDMYAKCGDMKGSSQVFDEMRRRSNVVSWNSLINGYAKNGYAEDALKIFDSM---RQ 827
Query: 109 GHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLF-KLGSSRNISLTGSLINFYGKFR 166
H++ P I + VL AC + G+++ ++ + G + +++ G++
Sbjct: 828 SHIM---PDEITFLGVLTACSHAGKVSDGRKIFEMMIGQYGIEARVDHVACMVDLLGRWG 884
Query: 167 CLEDA-DFVFSQLKRHNTVVWTAKIVNNCR 195
L++A DF+ +Q + + +W++ ++ CR
Sbjct: 885 YLQEADDFIEAQNLKPDARLWSS-LLGACR 913
>gi|302814190|ref|XP_002988779.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
gi|300143350|gb|EFJ10041.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
Length = 796
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 93/320 (29%), Positives = 150/320 (46%), Gaps = 36/320 (11%)
Query: 12 MYTCLIKECTFQKDSAGAFELLNHIRKRVN----IKPTLLFLNRLLLMHVSCGQLDTARQ 67
+YT ++ C S A E I R++ +K ++ N LL M+ CG L+ A++
Sbjct: 123 VYTTVLGACA----SIEALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSLEDAKR 178
Query: 68 LFDEMP-LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPA-WIIVCVLK 125
LF+ M R +SW MI Y ++E I L+ +M V P+ VL
Sbjct: 179 LFERMSGRRSVSSWNAMIAAYAQSGHFEEAIRLYEDMD---------VEPSVRTFTSVLS 229
Query: 126 ACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVV 185
AC ++ G+++H L+ G+ ++SL +L+ Y + +CL+DA +F +L R + V
Sbjct: 230 ACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVS 289
Query: 186 WTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANI 245
W+A I F + + +M E ++ N YTF+SVL AC V D GR +H I
Sbjct: 290 WSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDL-RAGRAVHDQI 348
Query: 246 VKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG----- 300
+ G + LVD+Y L +A +F+ I + ++ W ++ GY + G
Sbjct: 349 LGNGYKITLVNGTALVDLYTSYGSLDEARSLFDQI-ENRDEGLWTVLIGGYSKQGHRTGV 407
Query: 301 --LY--------VEATKFLY 310
LY V ATK +Y
Sbjct: 408 LELYREMKNTTKVPATKIIY 427
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 87/311 (27%), Positives = 151/311 (48%), Gaps = 21/311 (6%)
Query: 30 FELLNHIRKRVNIKPTL-LFL-NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGY 87
E + I R++ + +FL N ++ + CG + +AR FD + ++ SW M+ Y
Sbjct: 40 LESVRQIHDRISGAASANVFLGNEIVRAYGKCGSVASARVAFDAIARKNDYSWGSMLTAY 99
Query: 88 VDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKL- 146
Y+ + L+ M L P + VL AC +E GK +H +
Sbjct: 100 AQNGHYRAALDLYKRM-------DLQPNPV-VYTTVLGACASIEALEEGKAIHSRISGTK 151
Query: 147 GSSRNISLTGSLINFYGKFRCLEDADFVFSQLK-RHNTVVWTAKIVNNCREGHFHQVFND 205
G ++ L SL+ Y K LEDA +F ++ R + W A I + GHF +
Sbjct: 152 GLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRRSVSSWNAMIAAYAQSGHFEEAIRL 211
Query: 206 FKEMGRERIKKNSYTFSSVLKACG--GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDM 263
+++M ++ + TF+SVL AC G+ D GR++HA I G E D +Q L+ M
Sbjct: 212 YEDMD---VEPSVRTFTSVLSACSNLGLLDQ---GRKIHALISSRGTELDLSLQNALLTM 265
Query: 264 YGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESL 323
Y +C+ L DA ++F+ + ++++ SW+AM+ + L+ EA +F M+ G++
Sbjct: 266 YARCKCLDDAAKIFQRL-PRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYT 324
Query: 324 INDLRIACSSI 334
+ +AC+S+
Sbjct: 325 FASVLLACASV 335
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/291 (26%), Positives = 137/291 (47%), Gaps = 14/291 (4%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L N LL M+ C LD A ++F +P RD SW+ MI + + + E I +++M
Sbjct: 256 LSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKM-- 313
Query: 106 RKKGHMLLVFPAW-IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTG--SLINFY 162
+ V P + VL AC ++ G+ VH + LG+ I+L +L++ Y
Sbjct: 314 ----QLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQI--LGNGYKITLVNGTALVDLY 367
Query: 163 GKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEM-GRERIKKNSYTF 221
+ L++A +F Q++ + +WT I ++GH V ++EM ++ +
Sbjct: 368 TSYGSLDEARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVLELYREMKNTTKVPATKIIY 427
Query: 222 SSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIV 281
S V+ AC + + RQ H++I G+ SD + LV+MY + L A +VF+ +
Sbjct: 428 SCVISACASLGAFADA-RQAHSDIEADGMISDFVLATSLVNMYSRWGNLESARQVFDKMS 486
Query: 282 DKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+ +A W ++ GY ++G + A M+ G + E + ACS
Sbjct: 487 SRDTLA-WTTLIAGYAKHGEHGLALGLYKEMELEGAEPSELTFMVVLYACS 536
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 114/260 (43%), Gaps = 22/260 (8%)
Query: 43 KPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAE 102
K TL+ L+ ++ S G LD AR LFD++ RD W V+I GY + L+ E
Sbjct: 354 KITLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVLELYRE 413
Query: 103 MMKRKKGHMLLVFPAWIIV--CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLIN 160
M K PA I+ CV+ AC +Q H + G + L SL+N
Sbjct: 414 MKNTTK------VPATKIIYSCVISACASLGAFADARQAHSDIEADGMISDFVLATSLVN 467
Query: 161 FYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYT 220
Y ++ LE A VF ++ +T+ WT I + G +KEM E + + T
Sbjct: 468 MYSRWGNLESARQVFDKMSSRDTLAWTTLIAGYAKHGEHGLALGLYKEMELEGAEPSELT 527
Query: 221 FSSVLKACGGVDDDGNCGRQMHANIVKIGLESD-------EYVQCGLVDMYGKCRLLRDA 273
F VL AC + G Q + I ++SD + C ++D+ + L DA
Sbjct: 528 FMVVLYAC------SHAGLQEQGKQLFISIQSDYAMHPNIAHYSC-IIDLLSRAGRLSDA 580
Query: 274 ERVFELIVDKKNIASWNAML 293
E + + + N +W+++L
Sbjct: 581 EELINAMPVEPNDVTWSSLL 600
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 93/178 (52%), Gaps = 6/178 (3%)
Query: 132 NMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIV 191
++E +Q+H + S+ N+ L ++ YGK + A F + R N W + +
Sbjct: 39 DLESVRQIHDRISGAASA-NVFLGNEIVRAYGKCGSVASARVAFDAIARKNDYSWGSMLT 97
Query: 192 NNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKI-GL 250
+ GH+ + +K M ++ N +++VL AC ++ G+ +H+ I GL
Sbjct: 98 AYAQNGHYRAALDLYKRMD---LQPNPVVYTTVLGACASIEALEE-GKAIHSRISGTKGL 153
Query: 251 ESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKF 308
+ D ++ L+ MY KC L DA+R+FE + +++++SWNAM+ Y ++G + EA +
Sbjct: 154 KLDVILENSLLTMYAKCGSLEDAKRLFERMSGRRSVSSWNAMIAAYAQSGHFEEAIRL 211
>gi|357167803|ref|XP_003581340.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g63370-like [Brachypodium distachyon]
Length = 940
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 96/283 (33%), Positives = 137/283 (48%), Gaps = 8/283 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+LL M+ CG++ AR LFD M R SW +I Y+ E + ++ M R
Sbjct: 99 TKLLFMYGKCGRVADARLLFDGMSSRTVFSWNALIGAYLSSGSACEALGVYRAM--RLSA 156
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ + VLKA + G +VHGL K G R+ + +LI Y K L+
Sbjct: 157 ASGVAPDGCTLASVLKASGVEGDGRCGCEVHGLAVKHGLDRSTFVANALIAMYAKCGILD 216
Query: 170 DADFVFSQLKRHNTVV-WTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
A VF + V W + I + G F Q + F+ M R + NSYT VL+ C
Sbjct: 217 SAMRVFELMHDGRDVASWNSMISGCLQNGMFLQALDLFRGMQRAVLSMNSYTTVGVLQVC 276
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQC-GLVDMYGKCRLLRDAERVFELIVDKKNIA 287
+ N GR++HA ++K G E + +QC L+ MY KC + A RVF I D+K+
Sbjct: 277 TELAQL-NLGRELHAALLKSGSEVN--IQCNALLVMYTKCGRVDSALRVFREI-DEKDYI 332
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIA 330
SWN+ML Y++NGLY EA +F+ M G Q + I L A
Sbjct: 333 SWNSMLSCYVQNGLYAEAIEFISEMLRGGFQPDHACIVSLSSA 375
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/270 (27%), Positives = 137/270 (50%), Gaps = 10/270 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N LL+M+ CG++D+A ++F E+ +D+ SW M+ YV Y E I +EM++
Sbjct: 304 NALLVMYTKCGRVDSALRVFREIDEKDYISWNSMLSCYVQNGLYAEAIEFISEMLRGG-- 361
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMEL-GKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
P + L + V + L GK+VH K + + +L++ Y K R +
Sbjct: 362 ----FQPDHACIVSLSSAVGHLGWLLNGKEVHAYAIKQRLDSDTQVGNTLMDMYMKCRYI 417
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
E + VF +++ + + WT I + + F+E +E IK + S+L+AC
Sbjct: 418 EYSAHVFDRMRIKDHISWTTIITCYAQSSRHIEALEIFREAQKEGIKVDPMMIGSILEAC 477
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
G++ +Q+H ++ GL D V+ ++D+YG+C + + ++FE V++K+I +
Sbjct: 478 SGLETI-LLAKQLHCYAIRNGL-LDLVVKNRIIDIYGECGEVYHSLKMFE-TVEQKDIVT 534
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
W +M+ Y +GL EA M+++ +Q
Sbjct: 535 WTSMINCYANSGLLNEALVLFAEMQSTDVQ 564
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 79/286 (27%), Positives = 138/286 (48%), Gaps = 9/286 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEM-PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
N L+ M+ CG LD+A ++F+ M RD SW MI G + + + + LF M +
Sbjct: 203 NALIAMYAKCGILDSAMRVFELMHDGRDVASWNSMISGCLQNGMFLQALDLFRGMQR--- 259
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+L ++ V VL+ C + LG+++H L K GS NI L+ Y K +
Sbjct: 260 --AVLSMNSYTTVGVLQVCTELAQLNLGRELHAALLKSGSEVNIQCNALLV-MYTKCGRV 316
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+ A VF ++ + + W + + + G + + EM R + + S+ A
Sbjct: 317 DSALRVFREIDEKDYISWNSMLSCYVQNGLYAEAIEFISEMLRGGFQPDHACIVSLSSAV 376
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
G + N G+++HA +K L+SD V L+DMY KCR + + VF+ + K +I S
Sbjct: 377 GHLGWLLN-GKEVHAYAIKQRLDSDTQVGNTLMDMYMKCRYIEYSAHVFDRMRIKDHI-S 434
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
W ++ Y ++ ++EA + + GI++ +I + ACS +
Sbjct: 435 WTTIITCYAQSSRHIEALEIFREAQKEGIKVDPMMIGSILEACSGL 480
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 90/183 (49%), Gaps = 6/183 (3%)
Query: 136 GKQVHGLLFKLGSSRNIS--LTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNN 193
G QVH GS L L+ YGK + DA +F + W A I
Sbjct: 77 GVQVHAHAVATGSLEGDDGFLATKLLFMYGKCGRVADARLLFDGMSSRTVFSWNALIGAY 136
Query: 194 CREGHFHQVFNDFKEM---GRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGL 250
G + ++ M + + T +SVLKA GV+ DG CG ++H VK GL
Sbjct: 137 LSSGSACEALGVYRAMRLSAASGVAPDGCTLASVLKA-SGVEGDGRCGCEVHGLAVKHGL 195
Query: 251 ESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLY 310
+ +V L+ MY KC +L A RVFEL+ D +++ASWN+M+ G ++NG++++A
Sbjct: 196 DRSTFVANALIAMYAKCGILDSAMRVFELMHDGRDVASWNSMISGCLQNGMFLQALDLFR 255
Query: 311 LMK 313
M+
Sbjct: 256 GMQ 258
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 115/251 (45%), Gaps = 11/251 (4%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L+ NR++ ++ CG++ + ++F+ + +D +W MI Y + E + LFAEM
Sbjct: 501 LVVKNRIIDIYGECGEVYHSLKMFETVEQKDIVTWTSMINCYANSGLLNEALVLFAEMQS 560
Query: 106 RKKGHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
V P + +V +L A ++ GK+VHG L + ++ SL++ Y
Sbjct: 561 TD------VQPDSVALVSILGAIGGLSSLAKGKEVHGFLIRRNFHMEEAIVSSLVDMYSG 614
Query: 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
L A VF+ +K + V+WTA I GH Q + FK M + + + +F ++
Sbjct: 615 CGSLSGALKVFNAVKCKDMVLWTAMINATGMHGHGKQAIDLFKRMLQTGVTPDHVSFLAL 674
Query: 225 LKACGGVD--DDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282
L AC ++G C M + ++ + Y C +VD+ G+ +A + +
Sbjct: 675 LYACSHSKLVNEGKCYLDMMMSTYRLEPWQEHYA-C-VVDLLGRSGQTEEAYEFIKSMPL 732
Query: 283 KKNIASWNAML 293
K W ++L
Sbjct: 733 KPKSVVWCSLL 743
>gi|302806575|ref|XP_002985037.1| hypothetical protein SELMODRAFT_121365 [Selaginella moellendorffii]
gi|300147247|gb|EFJ13912.1| hypothetical protein SELMODRAFT_121365 [Selaginella moellendorffii]
Length = 763
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 94/331 (28%), Positives = 149/331 (45%), Gaps = 16/331 (4%)
Query: 11 DMYTCLIKECTFQKDSAGAFELLNHIRKR---VNIKPTLLFLNRLLLMHVSCGQLDTARQ 67
+ YT L++EC S A E I R + N L+ M+ CG L AR+
Sbjct: 236 EAYTSLLRECI----SGRALERGARIHARLIAIEKDKDTAIGNLLVQMYAKCGDLHRARK 291
Query: 68 LFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEM-MKRKKGHMLLVFPAWIIVCVLKA 126
F + R+ SW VM+ Y+D ++ + LF M ++ + M A+ + CVL A
Sbjct: 292 AFYSIERRNSVSWTVMLAAYIDHGKQEQGLCLFHTMDLEGAQADM----DAFTLSCVLSA 347
Query: 127 CVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVW 186
C G+ +H L G +I L +L+ Y K CLE+A VF ++ + V W
Sbjct: 348 CSSLGAGAEGQAIHARLVACGYELDIPLQNALVTMYAKCHCLEEARRVFDNIQDKSRVSW 407
Query: 187 TAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGN---CGRQMHA 243
T+ I + + F M + ++ + T S++ AC ++D G GR +H
Sbjct: 408 TSIISAYVQHERGDESLKMFLAMNLDGMQPDEMTLSALCAACCQLEDRGRGLAVGRGVHT 467
Query: 244 NIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYV 303
I G + + V LV MY +C L +A VF + K++ SWNAML + G
Sbjct: 468 RIRVAGHDQNPVVGTALVCMYARCGCLLEAAAVFNKLT-PKDVVSWNAMLTATVEAGEAE 526
Query: 304 EATKFLYLMKASGIQIQESLINDLRIACSSI 334
EA + M+A G+ + + ACS++
Sbjct: 527 EALRLHQRMRAEGVMPDAATFAVVVAACSAL 557
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 87/300 (29%), Positives = 145/300 (48%), Gaps = 10/300 (3%)
Query: 35 HIRKRVNIKPTLLFL-NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADY 93
H + R + ++ F+ N L+ M+ CG L A+++FD RD +W M++GY + +
Sbjct: 157 HSQSRTSGCDSVPFVANTLIDMYSKCGSLLDAKKVFDSTQARDAVAWTAMMLGYAENGEA 216
Query: 94 QECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNIS 153
+ + LFA M ++G M + +L+ C+ +E G ++H L + ++ +
Sbjct: 217 ERALHLFACM--EQQGCM---YNREAYTSLLRECISGRALERGARIHARLIAIEKDKDTA 271
Query: 154 LTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRER 213
+ L+ Y K L A F ++R N+V WT + G Q F M E
Sbjct: 272 IGNLLVQMYAKCGDLHRARKAFYSIERRNSVSWTVMLAAYIDHGKQEQGLCLFHTMDLEG 331
Query: 214 IKKN--SYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLR 271
+ + ++T S VL AC + G G+ +HA +V G E D +Q LV MY KC L
Sbjct: 332 AQADMDAFTLSCVLSACSSLGA-GAEGQAIHARLVACGYELDIPLQNALVTMYAKCHCLE 390
Query: 272 DAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
+A RVF+ I DK + SW +++ Y+++ E+ K M G+Q E ++ L AC
Sbjct: 391 EARRVFDNIQDKSRV-SWTSIISAYVQHERGDESLKMFLAMNLDGMQPDEMTLSALCAAC 449
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 81/293 (27%), Positives = 129/293 (44%), Gaps = 14/293 (4%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
LN L+ M+ CG L AR F+++ RD SW +I+ Y + E + LF+ M
Sbjct: 70 LNSLVNMYAKCGSLVEARAEFEKLQRRDAVSWTTLILAYTENGRGGEALELFSRMADEGC 129
Query: 109 GHMLLVFPAWIIVCV-LKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
+ A ++ C L C +E G VH G + +LI+ Y K
Sbjct: 130 LPDGRTYLAALVACASLLRC-----LERGMDVHSQSRTSGCDSVPFVANTLIDMYSKCGS 184
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
L DA VF + + V WTA ++ G + + F M ++ N ++S+L+
Sbjct: 185 LLDAKKVFDSTQARDAVAWTAMMLGYAENGEAERALHLFACMEQQGCMYNREAYTSLLRE 244
Query: 228 C--GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
C G + G ++HA ++ I + D + LV MY KC L A + F I +++N
Sbjct: 245 CISGRALERGA---RIHARLIAIEKDKDTAIGNLLVQMYAKCGDLHRARKAFYSI-ERRN 300
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQ--IQESLINDLRIACSSISA 336
SW ML YI +G + + M G Q + ++ + ACSS+ A
Sbjct: 301 SVSWTVMLAAYIDHGKQEQGLCLFHTMDLEGAQADMDAFTLSCVLSACSSLGA 353
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 75/290 (25%), Positives = 129/290 (44%), Gaps = 14/290 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ C L+ AR++FD + + SW +I YV E + +F M
Sbjct: 377 NALVTMYAKCHCLEEARRVFDNIQDKSRVSWTSIISAYVQHERGDESLKMFLAM------ 430
Query: 110 HMLLVFPAWIIVCVLKACVCTM-----NMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
++ + P + + L A C + + +G+ VH + G +N + +L+ Y +
Sbjct: 431 NLDGMQPDEMTLSALCAACCQLEDRGRGLAVGRGVHTRIRVAGHDQNPVVGTALVCMYAR 490
Query: 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
CL +A VF++L + V W A + G + + M E + ++ TF+ V
Sbjct: 491 CGCLLEAAAVFNKLTPKDVVSWNAMLTATVEAGEAEEALRLHQRMRAEGVMPDAATFAVV 550
Query: 225 LKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
+ AC + D+ R +H + GL+ LV MY KC L DA VFE +
Sbjct: 551 VAACSALKDEAT-SRAVHTEVAARGLDGHPVSGTALVCMYAKCGRLDDATTVFERMQRHS 609
Query: 285 --NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+A+WN++L ++G A +F +M + +Q I + ACS
Sbjct: 610 VLAVAAWNSILAALAKHGHGATAVEFFRVMTMAYVQPDGITITVMLHACS 659
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 7/71 (9%)
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW------NAMLV 294
+HA V+IG ESD +V ++D++ +C L +A VF+ +V ++++ SW N+++
Sbjct: 17 LHAGAVEIGAESDTFVANTVIDVFSRCGSLVNARNVFDRMV-RRDVVSWNDSYALNSLVN 75
Query: 295 GYIRNGLYVEA 305
Y + G VEA
Sbjct: 76 MYAKCGSLVEA 86
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 5/128 (3%)
Query: 208 EMGRERIKKNSYTFSSVLKACGGVDDDGNC-GRQMHANIVKIGLESDEYVQCGLVDMYGK 266
E+G E + T V CG + + N R + ++V +D Y LV+MY K
Sbjct: 23 EIGAESDTFVANTVIDVFSRCGSLVNARNVFDRMVRRDVVSW---NDSYALNSLVNMYAK 79
Query: 267 CRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLIND 326
C L +A FE + +++ SW +++ Y NG EA + M G
Sbjct: 80 CGSLVEARAEFEKL-QRRDAVSWTTLILAYTENGRGGEALELFSRMADEGCLPDGRTYLA 138
Query: 327 LRIACSSI 334
+AC+S+
Sbjct: 139 ALVACASL 146
>gi|297818196|ref|XP_002876981.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297322819|gb|EFH53240.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 693
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 100/359 (27%), Positives = 158/359 (44%), Gaps = 37/359 (10%)
Query: 7 PITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTAR 66
P+ +Y L + C+ + A ++ +H+ + P+ L LNR + + CG +D AR
Sbjct: 58 PVGYWLYERLFRSCSSKSLVVQARKVQSHLVTFSPLPPSFL-LNRAIEAYGKCGCVDDAR 116
Query: 67 QLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKA 126
+LF++MP RD SW +I E +F M + F VLK+
Sbjct: 117 ELFEQMPERDGGSWNAVITACAQNGVSDEVFRMFHRMNRDGVRATETSFAG-----VLKS 171
Query: 127 CVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVW 186
C +++ L Q+H + K G S NI L S+++ YGK + + DA VF ++ + V W
Sbjct: 172 CGLVLDLRLLMQLHCAVVKYGYSGNIDLETSIVDVYGKCQVMSDARRVFDEIVNPSDVSW 231
Query: 187 TAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIV 246
+ G + F +M ++ ++T SSV+ AC G+ +HA V
Sbjct: 232 NVIVRRYLEMGFNDEAVVMFFKMLELNVRPLNHTVSSVMLACSR-SLALEVGKVIHAIAV 290
Query: 247 KIGLESDEYVQCGLVDMYGKCRLLRDAERVFEL--------------------------- 279
KI + +D V + DMY KC L A RVF+
Sbjct: 291 KISVVADTVVSTSIFDMYVKCDRLESARRVFDQTKSKDLKSWTSAMSGYAMSGITREARE 350
Query: 280 ---IVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
++ ++NI SWNAML GY+R + +A FL LM+ I + + CS IS
Sbjct: 351 LFDLMPERNIVSWNAMLGGYVRAHEWDDALDFLTLMRKEIEDIDNVTLVWILNVCSGIS 409
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 134/268 (50%), Gaps = 9/268 (3%)
Query: 65 ARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVL 124
AR+LFD MP R+ SW M+ GYV ++ + + F +M+++ + V WI L
Sbjct: 348 ARELFDLMPERNIVSWNAMLGGYVRAHEWDDALD-FLTLMRKEIEDIDNVTLVWI----L 402
Query: 125 KACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR-HNT 183
C ++++GKQ HG +++ G N+ + +L++ YGK L+ A+ F Q+ +
Sbjct: 403 NVCSGISDVQMGKQAHGFIYRHGYDMNVIVANALLDMYGKCGTLQSANIWFRQMSELRDE 462
Query: 184 VVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHA 243
V W A + R G Q + F+ M E K + YT +++L C + N G+ +H
Sbjct: 463 VSWNALLTGVARVGRSEQALSFFEGMQME-AKPSKYTLATLLAGCANI-PALNLGKAIHG 520
Query: 244 NIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYV 303
+++ G D ++ +VDMY KCR A VF+ +++ WN+++ G RNG
Sbjct: 521 FLIRNGYNIDVVIRGAMVDMYSKCRCFDYAIEVFKEAA-TRDLILWNSIIRGCCRNGRSK 579
Query: 304 EATKFLYLMKASGIQIQESLINDLRIAC 331
E + L++ G++ + + AC
Sbjct: 580 EVFELFMLLEDEGVKPDHVTFSAILQAC 607
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 91/184 (49%), Gaps = 7/184 (3%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMP-LRDFNSWAVMIVGYVDVADYQECITLFAEMM 104
++ N LL M+ CG L +A F +M LRD SW ++ G V ++ ++ F M
Sbjct: 430 VIVANALLDMYGKCGTLQSANIWFRQMSELRDEVSWNALLTGVARVGRSEQALSFFEGMQ 489
Query: 105 KRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
K + + +L C + LGK +HG L + G + ++ + G++++ Y K
Sbjct: 490 MEAKP------SKYTLATLLAGCANIPALNLGKAIHGFLIRNGYNIDVVIRGAMVDMYSK 543
Query: 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
RC + A VF + + ++W + I CR G +VF F + E +K + TFS++
Sbjct: 544 CRCFDYAIEVFKEAATRDLILWNSIIRGCCRNGRSKEVFELFMLLEDEGVKPDHVTFSAI 603
Query: 225 LKAC 228
L+AC
Sbjct: 604 LQAC 607
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 78/312 (25%), Positives = 136/312 (43%), Gaps = 44/312 (14%)
Query: 59 CGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK---RKKGHMLLVF 115
C + AR++FDE+ SW V++ Y+++ E + +F +M++ R H
Sbjct: 210 CQVMSDARRVFDEIVNPSDVSWNVIVRRYLEMGFNDEAVVMFFKMLELNVRPLNH----- 264
Query: 116 PAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVF 175
+ V+ AC ++ +E+GK +H + K+ + ++ S+ + Y K LE A VF
Sbjct: 265 ---TVSSVMLACSRSLALEVGKVIHAIAVKISVVADTVVSTSIFDMYVKCDRLESARRVF 321
Query: 176 SQLKRHNTVVWTAKIVNNCREG---HFHQVFN---------------------------D 205
Q K + WT+ + G ++F+ D
Sbjct: 322 DQTKSKDLKSWTSAMSGYAMSGITREARELFDLMPERNIVSWNAMLGGYVRAHEWDDALD 381
Query: 206 FKEMGRERIKK-NSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMY 264
F + R+ I+ ++ T +L C G+ D G+Q H I + G + + V L+DMY
Sbjct: 382 FLTLMRKEIEDIDNVTLVWILNVCSGISD-VQMGKQAHGFIYRHGYDMNVIVANALLDMY 440
Query: 265 GKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLI 324
GKC L+ A F + + ++ SWNA+L G R G +A F M+ + +L
Sbjct: 441 GKCGTLQSANIWFRQMSELRDEVSWNALLTGVARVGRSEQALSFFEGMQMEAKPSKYTLA 500
Query: 325 NDLRIACSSISA 336
L C++I A
Sbjct: 501 T-LLAGCANIPA 511
>gi|297740651|emb|CBI30833.3| unnamed protein product [Vitis vinifera]
Length = 709
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 87/293 (29%), Positives = 150/293 (51%), Gaps = 15/293 (5%)
Query: 47 LFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWA--VMIVGYVDVADYQECITLFAEMM 104
L + L+ M+ C Q++ A +F + P + N +A +I G++ +E + +M
Sbjct: 73 LSITSLINMYSKCNQMNFALSIFSD-PTHEINVFAFNAIISGFITNGFPEEGFEFYQKM- 130
Query: 105 KRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYG 163
R +G V P + C +KAC+ + + K++HGLLFK G ++ + +L+N Y
Sbjct: 131 -RNEG----VIPDKFTFPCAIKACLDVLEI---KKIHGLLFKFGLELDVFIGSALVNCYL 182
Query: 164 KFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSS 223
KF +E A F +L + V+W A + + G F V F+ M E + + +T +
Sbjct: 183 KFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTG 242
Query: 224 VLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
VL V D N GR +H +K+G +S V L+DMYGKC+ + DA +FE++ +
Sbjct: 243 VLSVF-AVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMM-RE 300
Query: 284 KNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
K+I SWN+++ + + G + + L M +GIQ + + ACS ++A
Sbjct: 301 KDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAA 353
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/280 (26%), Positives = 134/280 (47%), Gaps = 15/280 (5%)
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPA-W 118
G ++ A+ F+E+P+RD W M+ GY + ++ + F M V P+ +
Sbjct: 185 GLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDES------VVPSRF 238
Query: 119 IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL 178
+ VL ++ G+ +HG K+G ++++ SLI+ YGK +C+EDA +F +
Sbjct: 239 TVTGVLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMM 298
Query: 179 KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCG 238
+ + W + + + + G M I+ + T ++VL AC + + G
Sbjct: 299 REKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMH-G 357
Query: 239 RQMHANIVKIGLESDE------YVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAM 292
R++H ++ GL D ++ ++DMY KC +RDA VFE + K++ASWN M
Sbjct: 358 REIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERM-SNKDVASWNIM 416
Query: 293 LVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
++GY +G EA + M ++ E + ACS
Sbjct: 417 IMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACS 456
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 88/190 (46%), Gaps = 8/190 (4%)
Query: 116 PAWIIVCV--LKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADF 173
P + C+ L+A N+ GK++H + G + SLIN Y K + A
Sbjct: 34 PYNLTTCIASLQASAHHKNLSKGKEIHSYMLINGFLNSPLSITSLINMYSKCNQMNFALS 93
Query: 174 VFSQLKRH-NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVD 232
+FS N + A I G + F +++M E + + +TF +KAC V
Sbjct: 94 IFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIKACLDVL 153
Query: 233 DDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAM 292
+ +++H + K GLE D ++ LV+ Y K L+ A+ FE + +++ WNAM
Sbjct: 154 EI----KKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEEL-PIRDVVLWNAM 208
Query: 293 LVGYIRNGLY 302
+ GY + G +
Sbjct: 209 VNGYAQIGQF 218
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 42/80 (52%)
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYI 297
G+++H+ ++ G + L++MY KC + A +F + N+ ++NA++ G+I
Sbjct: 56 GKEIHSYMLINGFLNSPLSITSLINMYSKCNQMNFALSIFSDPTHEINVFAFNAIISGFI 115
Query: 298 RNGLYVEATKFLYLMKASGI 317
NG E +F M+ G+
Sbjct: 116 TNGFPEEGFEFYQKMRNEGV 135
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 79/174 (45%), Gaps = 18/174 (10%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
+L N ++ M+ CG + A +F+ M +D SW +MI+GY E + +F+ M +
Sbjct: 379 VLLKNAVIDMYAKCGSMRDAHLVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCE 438
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLT----GSLINF 161
+ + F V VL AC + G+ L ++ S +++ T +I+
Sbjct: 439 VQLKPDEVTF-----VGVLSACSHAGFVSQGRN---FLVQMKSKYDVAPTIEHYTCVIDM 490
Query: 162 YGKFRCLEDA-DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERI 214
G+ L++A + + N VVW A ++ CR H H V E+ +R+
Sbjct: 491 LGRAGQLDEAYELALTMPIEANPVVWRA-LLAACRL-HKHAV---LAEVAAQRV 539
>gi|225463424|ref|XP_002272240.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g14730-like [Vitis vinifera]
Length = 629
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 87/293 (29%), Positives = 150/293 (51%), Gaps = 15/293 (5%)
Query: 47 LFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWA--VMIVGYVDVADYQECITLFAEMM 104
L + L+ M+ C Q++ A +F + P + N +A +I G++ +E + +M
Sbjct: 73 LSITSLINMYSKCNQMNFALSIFSD-PTHEINVFAFNAIISGFITNGFPEEGFEFYQKM- 130
Query: 105 KRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYG 163
R +G V P + C +KAC+ + + K++HGLLFK G ++ + +L+N Y
Sbjct: 131 -RNEG----VIPDKFTFPCAIKACLDVLEI---KKIHGLLFKFGLELDVFIGSALVNCYL 182
Query: 164 KFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSS 223
KF +E A F +L + V+W A + + G F V F+ M E + + +T +
Sbjct: 183 KFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTG 242
Query: 224 VLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
VL V D N GR +H +K+G +S V L+DMYGKC+ + DA +FE++ +
Sbjct: 243 VLSVF-AVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMM-RE 300
Query: 284 KNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
K+I SWN+++ + + G + + L M +GIQ + + ACS ++A
Sbjct: 301 KDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAA 353
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 75/280 (26%), Positives = 134/280 (47%), Gaps = 15/280 (5%)
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPA-W 118
G ++ A+ F+E+P+RD W M+ GY + ++ + F M V P+ +
Sbjct: 185 GLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDES------VVPSRF 238
Query: 119 IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL 178
+ VL ++ G+ +HG K+G ++++ SLI+ YGK +C+EDA +F +
Sbjct: 239 TVTGVLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMM 298
Query: 179 KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCG 238
+ + W + + + + G M I+ + T ++VL AC + + G
Sbjct: 299 REKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMH-G 357
Query: 239 RQMHANIVKIGLESDE------YVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAM 292
R++H ++ GL D ++ ++DMY KC +RDA VFE + K++ASWN M
Sbjct: 358 REIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERM-SNKDVASWNIM 416
Query: 293 LVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
++GY +G EA + M ++ E + ACS
Sbjct: 417 IMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACS 456
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 88/190 (46%), Gaps = 8/190 (4%)
Query: 116 PAWIIVCV--LKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADF 173
P + C+ L+A N+ GK++H + G + SLIN Y K + A
Sbjct: 34 PYNLTTCIASLQASAHHKNLSKGKEIHSYMLINGFLNSPLSITSLINMYSKCNQMNFALS 93
Query: 174 VFSQLKRH-NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVD 232
+FS N + A I G + F +++M E + + +TF +KAC V
Sbjct: 94 IFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIKACLDVL 153
Query: 233 DDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAM 292
+ +++H + K GLE D ++ LV+ Y K L+ A+ FE + +++ WNAM
Sbjct: 154 EI----KKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEEL-PIRDVVLWNAM 208
Query: 293 LVGYIRNGLY 302
+ GY + G +
Sbjct: 209 VNGYAQIGQF 218
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 79/174 (45%), Gaps = 18/174 (10%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
+L N ++ M+ CG + A +F+ M +D SW +MI+GY E + +F+ M +
Sbjct: 379 VLLKNAVIDMYAKCGSMRDAHLVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCE 438
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLT----GSLINF 161
+ + F V VL AC + G+ L ++ S +++ T +I+
Sbjct: 439 VQLKPDEVTF-----VGVLSACSHAGFVSQGRN---FLVQMKSKYDVAPTIEHYTCVIDM 490
Query: 162 YGKFRCLEDA-DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERI 214
G+ L++A + + N VVW A ++ CR H H V E+ +R+
Sbjct: 491 LGRAGQLDEAYELALTMPIEANPVVWRA-LLAACRL-HKHAV---LAEVAAQRV 539
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 42/80 (52%)
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYI 297
G+++H+ ++ G + L++MY KC + A +F + N+ ++NA++ G+I
Sbjct: 56 GKEIHSYMLINGFLNSPLSITSLINMYSKCNQMNFALSIFSDPTHEINVFAFNAIISGFI 115
Query: 298 RNGLYVEATKFLYLMKASGI 317
NG E +F M+ G+
Sbjct: 116 TNGFPEEGFEFYQKMRNEGV 135
>gi|297823227|ref|XP_002879496.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325335|gb|EFH55755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 617
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 88/260 (33%), Positives = 135/260 (51%), Gaps = 15/260 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+ L++M+ CG + AR++FDE+ R SW MI GY + ++ + LF +M +
Sbjct: 168 HSLIMMYAKCGLVGYARKVFDEITDRVTVSWNSMISGYSEAGRAKDAMDLFRKMEEEG-- 225
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLT---GS-LINFYGKF 165
+V +L AC ++ G+ LL K+ ++ I L+ GS LI YGK
Sbjct: 226 ---FEPDERTLVSMLGACAHLGDLTTGR----LLEKMAITKKIGLSTFLGSKLITMYGKC 278
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
L+ A VF+Q+ + + V W A I + G + F F EM + + ++ T S+VL
Sbjct: 279 GDLDSARRVFNQMIKKDRVAWNAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVL 338
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
ACG V G+++ + +I L+ + YV GLVDMYGKC + +A RVFE + KN
Sbjct: 339 SACGSVGAL-ELGKRIETHASEISLQHNIYVATGLVDMYGKCGHIEEALRVFEAM-PVKN 396
Query: 286 IASWNAMLVGYIRNGLYVEA 305
A+WNAM+ Y G EA
Sbjct: 397 EATWNAMITAYAHQGHAKEA 416
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 82/290 (28%), Positives = 133/290 (45%), Gaps = 12/290 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDV-ADYQECITLFAEMMKRKK 108
N L+ V G + A L + S+ MI G ++ D++ ++L+ R+
Sbjct: 66 NFLIPKAVELGDFNYASFLLSVTEEPNHYSFNYMIRGLTNIWNDHEGALSLY-----RRM 120
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+ L + V AC + +G+ VH LFK+G R+ ++ SLI Y K +
Sbjct: 121 KYSGLKPDNFTYNFVFIACGKREEIGVGRSVHSSLFKVGLERDDHISHSLIMMYAKCGLV 180
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
A VF ++ TV W + I G + F++M E + + T S+L AC
Sbjct: 181 GYARKVFDEITDRVTVSWNSMISGYSEAGRAKDAMDLFRKMEEEGFEPDERTLVSMLGAC 240
Query: 229 GGVDDDGNCGRQMHANIV--KIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
+ D GR + + KIGL + ++ L+ MYGKC L A RVF ++ K +
Sbjct: 241 AHLGDL-TTGRLLEKMAITKKIGLST--FLGSKLITMYGKCGDLDSARRVFNQMIKKDRV 297
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
A WNAM+ Y +NG EA K + M+ +G+ ++ + AC S+ A
Sbjct: 298 A-WNAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGA 346
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/239 (29%), Positives = 105/239 (43%), Gaps = 14/239 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
++L+ M+ CG LD+AR++F++M +D +W MI Y E LF EM K
Sbjct: 269 SKLITMYGKCGDLDSARRVFNQMIKKDRVAWNAMITVYSQNGKSSEAFKLFFEMEKTG-- 326
Query: 110 HMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
V P A + VL AC +ELGK++ ++ NI + L++ YGK +
Sbjct: 327 ----VSPDAGTLSTVLSACGSVGALELGKRIETHASEISLQHNIYVATGLVDMYGKCGHI 382
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
E+A VF + N W A I +GH + F +M + + TF VL AC
Sbjct: 383 EEALRVFEAMPVKNEATWNAMITAYAHQGHAKEALLLFDQM---PVPPSDVTFIGVLSAC 439
Query: 229 --GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
G+ D G C R H GL ++D+ + LL +A E K +
Sbjct: 440 VHAGLVDQG-C-RYFHEMSSLFGLVPKIEHYTNIIDLLSRAGLLDEAWEFMERFPGKPD 496
Score = 45.8 bits (107), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 51/107 (47%), Gaps = 13/107 (12%)
Query: 26 SAGAFELLNHIR---KRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAV 82
S GA EL I ++++ + L+ M+ CG ++ A ++F+ MP+++ +W
Sbjct: 343 SVGALELGKRIETHASEISLQHNIYVATGLVDMYGKCGHIEEALRVFEAMPVKNEATWNA 402
Query: 83 MIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI-IVCVLKACV 128
MI Y +E + LF +M V P+ + + VL ACV
Sbjct: 403 MITAYAHQGHAKEALLLFDQMP---------VPPSDVTFIGVLSACV 440
>gi|302788478|ref|XP_002976008.1| hypothetical protein SELMODRAFT_104228 [Selaginella moellendorffii]
gi|300156284|gb|EFJ22913.1| hypothetical protein SELMODRAFT_104228 [Selaginella moellendorffii]
Length = 495
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 87/306 (28%), Positives = 147/306 (48%), Gaps = 15/306 (4%)
Query: 31 ELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDV 90
E+++ + R + L+ L+ M+ C +L ARQ+FD + +D +W+ MI Y +
Sbjct: 96 EMIHRLVARKKLDVGLIVGTALVGMYGKCSRLIEARQVFDGIVEKDVVTWSTMISAYAQL 155
Query: 91 ADYQECITLFAEMMKRKKGHMLLVFPAWIIV-CVLKACVCTMNMELGKQVHGLLFKLGSS 149
+E I LF M ++ V P II+ +L AC + GK H L+ G
Sbjct: 156 GHVREAIQLFGYM------NLDGVRPNEIILMSILGACSSAGALAEGKMTHELVVICGFG 209
Query: 150 RNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEM 209
++S +LI YGK L A VF ++R + + W+A + GH F F+ M
Sbjct: 210 ADVSTGNTLIKMYGKCGDLASAKAVFGGMERRDLISWSAMLAVIAEHGHCKDAFVHFRRM 269
Query: 210 GRERIKKNSYTFSSVLKAC---GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGK 266
E +K + TF S+L AC G + + G +H I G +S Y++ L+DMYGK
Sbjct: 270 DLEGVKPDYVTFVSLLDACSLLGALVE----GHVIHTRIRAEGFQSVMYIENSLIDMYGK 325
Query: 267 CRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLIND 326
C L+ A +F+ + +N+ +W M+ +++ EA + M+ +G+Q +
Sbjct: 326 CGSLQAAREIFDRM-SHRNVITWTTMITACVQHEQGKEALELFEEMEKAGVQPDQVAFLS 384
Query: 327 LRIACS 332
+ +CS
Sbjct: 385 IIHSCS 390
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 78/288 (27%), Positives = 129/288 (44%), Gaps = 9/288 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N LL M+ CG ++ AR+ F+ M R+ SW+ M+ Y D+ + + LF +M +
Sbjct: 14 NSLLNMYGKCGGVEEAREFFESMTHRNVISWSTMVAAYAQRGDHDQALVLFQKMEEEG-- 71
Query: 110 HMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
V P + + VL AC +E G+ +H L+ + + + +L+ YGK L
Sbjct: 72 ----VEPNEVTFLSVLDACANAEAVEQGEMIHRLVARKKLDVGLIVGTALVGMYGKCSRL 127
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+A VF + + V W+ I + GH + F M + ++ N S+L AC
Sbjct: 128 IEARQVFDGIVEKDVVTWSTMISAYAQLGHVREAIQLFGYMNLDGVRPNEIILMSILGAC 187
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
G+ H +V G +D L+ MYGKC L A+ VF + +++++ S
Sbjct: 188 SSAGALAE-GKMTHELVVICGFGADVSTGNTLIKMYGKCGDLASAKAVFGGM-ERRDLIS 245
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
W+AML +G +A M G++ L ACS + A
Sbjct: 246 WSAMLAVIAEHGHCKDAFVHFRRMDLEGVKPDYVTFVSLLDACSLLGA 293
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 59/257 (22%), Positives = 111/257 (43%), Gaps = 31/257 (12%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ CG L +A+ +F M RD SW+ M+ +A++ C F ++
Sbjct: 216 NTLIKMYGKCGDLASAKAVFGGMERRDLISWSAMLA---VIAEHGHCKDAFVHF---RRM 269
Query: 110 HMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+ V P ++ V +L AC + G +H + G + + SLI+ YGK L
Sbjct: 270 DLEGVKPDYVTFVSLLDACSLLGALVEGHVIHTRIRAEGFQSVMYIENSLIDMYGKCGSL 329
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+ A +F ++ N + WT I + + F+EM + ++ + F S++ +C
Sbjct: 330 QAAREIFDRMSHRNVITWTTMITACVQHEQGKEALELFEEMEKAGVQPDQVAFLSIIHSC 389
Query: 229 GGVDDDGNCGRQMHANIVKIG-------LESDEYVQ-----CGLVDMYGKCRLLRDAERV 276
H+ +V+ G +E + G++D+ G+ L +AE +
Sbjct: 390 S------------HSGLVEEGRIYFLKMVEDQSFTPGVEHFVGMLDLLGRSGKLNEAEEL 437
Query: 277 FELIVDKKNIASWNAML 293
E + + + WN +L
Sbjct: 438 MEFMPVEPGVVGWNTLL 454
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 249 GLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKF 308
GL E+V L++MYGKC + +A FE + +N+ SW+ M+ Y + G + +A
Sbjct: 5 GLCCGEFVGNSLLNMYGKCGGVEEAREFFESMT-HRNVISWSTMVAAYAQRGDHDQALVL 63
Query: 309 LYLMKASGIQIQESLINDLRIACSSISA 336
M+ G++ E + AC++ A
Sbjct: 64 FQKMEEEGVEPNEVTFLSVLDACANAEA 91
>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
Length = 948
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 95/312 (30%), Positives = 153/312 (49%), Gaps = 17/312 (5%)
Query: 8 ITTDMYT--CLIKECTFQKDSAGAFELLNHIRKRV---NIKPTLLFLNRLLLMHVSCGQL 62
+ D YT +I C D FE+ I RV L N L+ M+ L
Sbjct: 170 LQPDTYTFPSVINACAGLLD----FEMAKSIHDRVLXMGFGSDLYIGNALIDMYCRFNDL 225
Query: 63 DTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVC 122
D AR++F+EMPLRD SW +I GY + E + ++ R G +V ++ +
Sbjct: 226 DKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRF--RNLG---VVPDSYTMSS 280
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
VL+AC ++E G +HGL+ K+G +++ + L++ Y KF L D +F ++ +
Sbjct: 281 VLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRD 340
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
V W I + G + + F EM + K + T +S+L+ACG + D G+ +H
Sbjct: 341 AVSWNTMICGYSQVGLYEESIKLFMEM-VNQFKPDLLTITSILQACGHL-GDLEFGKYVH 398
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
++ G E D L++MY KC L ++ VF + K ++ SWN+M+ YI+NG +
Sbjct: 399 DYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSV-SWNSMINVYIQNGSF 457
Query: 303 VEATKFLYLMKA 314
EA K +MK
Sbjct: 458 DEAMKLFKMMKT 469
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 88/308 (28%), Positives = 155/308 (50%), Gaps = 9/308 (2%)
Query: 31 ELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDV 90
++++ + +++ IK ++ N LL M+ L R++FD+M LRD SW MI GY V
Sbjct: 295 DIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQV 354
Query: 91 ADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSR 150
Y+E I LF EM+ + K +L I +L+AC ++E GK VH + G
Sbjct: 355 GLYEESIKLFMEMVNQFKPDLL------TITSILQACGHLGDLEFGKYVHDYMITSGYEC 408
Query: 151 NISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMG 210
+ + + LIN Y K L + VFS +K ++V W + I + G F + FK M
Sbjct: 409 DTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMM- 467
Query: 211 RERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLL 270
+ +K +S T+ +L + D G+++H ++ K+G S+ V LVDMY KC +
Sbjct: 468 KTDVKPDSVTYVMLLSMSTQL-GDLXLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEM 526
Query: 271 RDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIA 330
D+ +VFE + ++I +WN ++ + + + + M+ G+ + + +
Sbjct: 527 GDSLKVFENM-KARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPV 585
Query: 331 CSSISASK 338
CS ++A +
Sbjct: 586 CSLLAAKR 593
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 122/243 (50%), Gaps = 13/243 (5%)
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN 132
P + W +I + E ++L++E + + FP+ V+ AC ++
Sbjct: 135 PSNNVYXWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPS-----VINACAGLLD 189
Query: 133 MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192
E+ K +H + +G ++ + +LI+ Y +F L+ A VF ++ + V W + I
Sbjct: 190 FEMAKSIHDRVLXMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISG 249
Query: 193 NCREGHFHQ---VFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIG 249
G++++ ++ F+ +G + +SYT SSVL+ACGG+ G +H I KIG
Sbjct: 250 YNANGYWNEALEIYYRFRNLG---VVPDSYTMSSVLRACGGLGSVEE-GDIIHGLIEKIG 305
Query: 250 LESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFL 309
++ D V GL+ MY K L D R+F+ +V ++ SWN M+ GY + GLY E+ K
Sbjct: 306 IKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMV-LRDAVSWNTMICGYSQVGLYEESIKLF 364
Query: 310 YLM 312
M
Sbjct: 365 MEM 367
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 79/284 (27%), Positives = 137/284 (48%), Gaps = 10/284 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ CG L ++++F M +D SW MI Y+ + E + LF +MMK
Sbjct: 414 NILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLF-KMMKTD-- 470
Query: 110 HMLLVFPAWIIVCVLKACVCTM-NMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
V P + +L + + ++ LGK++H L K+G + NI ++ +L++ Y K +
Sbjct: 471 ----VKPDSVTYVMLLSMSTQLGDLXLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEM 526
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
D+ VF +K + + W I + + M E + + T S+L C
Sbjct: 527 GDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVC 586
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
+ G+++H I K+GLESD V L++MY KC LR++ +VF+L+ K++ +
Sbjct: 587 SLLAAKRQ-GKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLM-KTKDVVT 644
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
W A++ G +A + M+A+GI + ACS
Sbjct: 645 WTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACS 688
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 98/200 (49%), Gaps = 3/200 (1%)
Query: 138 QVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTV-VWTAKIVNNCRE 196
++H L+ LG ++ + LI Y FR + VF N V W + I
Sbjct: 93 KLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLASPSNNVYXWNSIIRALTHN 152
Query: 197 GHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYV 256
G F + + + E R R++ ++YTF SV+ AC G+ D + +H ++ +G SD Y+
Sbjct: 153 GLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLD-FEMAKSIHDRVLXMGFGSDLYI 211
Query: 257 QCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASG 316
L+DMY + L A +VFE + +++ SWN+++ GY NG + EA + Y + G
Sbjct: 212 GNALIDMYCRFNDLDKARKVFEEM-PLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLG 270
Query: 317 IQIQESLINDLRIACSSISA 336
+ ++ + AC + +
Sbjct: 271 VVPDSYTMSSVLRACGGLGS 290
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 115/259 (44%), Gaps = 13/259 (5%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
++ ++ N L+ M+ CG++ + ++F+ M RD +W +I V D +
Sbjct: 503 KMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLR 562
Query: 99 LFAEMMKRKKGHMLLVFPAW-IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGS 157
+ + M R +G V P ++ +L C GK++HG +FKLG ++ +
Sbjct: 563 MISRM--RTEG----VTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNV 616
Query: 158 LINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKN 217
LI Y K L ++ VF +K + V WTA I G + F EM I +
Sbjct: 617 LIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPD 676
Query: 218 SYTFSSVLKAC---GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAE 274
F +++ AC G V++ N +M + KI + Y C +VD+ + LL AE
Sbjct: 677 HVAFVAIIFACSHSGLVEEGLNYFHRMKKD-YKIEPRIEHYA-C-VVDLLSRSALLDKAE 733
Query: 275 RVFELIVDKKNIASWNAML 293
+ K + + W A+L
Sbjct: 734 DFILSMPLKPDSSIWGALL 752
>gi|356574473|ref|XP_003555371.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g63370-like [Glycine max]
Length = 923
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 92/295 (31%), Positives = 143/295 (48%), Gaps = 14/295 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+LL M+ CG L A ++FDEM R +W M+ +V Y E I L+ EM
Sbjct: 83 TKLLHMYEKCGSLKDAVKVFDEMTERTIFTWNAMMGAFVSSGKYLEAIELYKEMRVLGVA 142
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
FP+ VLKAC LG ++HG+ K G + + +LI YGK L
Sbjct: 143 IDACTFPS-----VLKACGALGESRLGAEIHGVAVKCGFGEFVFVCNALIAMYGKCGDLG 197
Query: 170 DADFVFS--QLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
A +F +++ +TV W + I + EG + + F+ M + N+YTF + L+
Sbjct: 198 GARVLFDGIMMEKEDTVSWNSIISAHVTEGKCLEALSLFRRMQEVGVASNTYTFVAALQ- 256
Query: 228 CGGVDDDG--NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
GV+D G +H +K +D YV L+ MY KC + DAERVF ++ ++
Sbjct: 257 --GVEDPSFVKLGMGIHGAALKSNHFADVYVANALIAMYAKCGRMEDAERVFASML-CRD 313
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKIN 340
SWN +L G ++N LY +A + M+ S + + + +L IA S S + +N
Sbjct: 314 YVSWNTLLSGLVQNELYRDALNYFRDMQNSAQKPDQVSVLNL-IAASGRSGNLLN 367
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/290 (26%), Positives = 141/290 (48%), Gaps = 10/290 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ CG+++ A ++F M RD+ SW ++ G V Y++ + F +M +
Sbjct: 287 NALIAMYAKCGRMEDAERVFASMLCRDYVSWNTLLSGLVQNELYRDALNYFRDMQNSAQK 346
Query: 110 HMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
P + ++ ++ A + N+ GK+VH + G N+ + +LI+ Y K C+
Sbjct: 347 ------PDQVSVLNLIAASGRSGNLLNGKEVHAYAIRNGLDSNMQIGNTLIDMYAKCCCV 400
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+ + F + + + WT I + + N F+++ + + + SVL+AC
Sbjct: 401 KHMGYAFECMHEKDLISWTTIIAGYAQNECHLEAINLFRKVQVKGMDVDPMMIGSVLRAC 460
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
G+ N R++H + K L +D +Q +V++YG+ A R FE I K+I S
Sbjct: 461 SGLKSR-NFIREIHGYVFKRDL-ADIMLQNAIVNVYGEVGHRDYARRAFESI-RSKDIVS 517
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASK 338
W +M+ + NGL VEA + Y +K + IQ I A +++S+ K
Sbjct: 518 WTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATANLSSLK 567
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 135/289 (46%), Gaps = 9/289 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDE--MPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRK 107
N L+ M+ CG L AR LFD M D SW +I +V E ++LF R+
Sbjct: 184 NALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVTEGKCLEALSLF-----RR 238
Query: 108 KGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
+ + + V L+ ++LG +HG K ++ + +LI Y K
Sbjct: 239 MQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAALKSNHFADVYVANALIAMYAKCGR 298
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
+EDA+ VF+ + + V W + + + N F++M K + + +++ A
Sbjct: 299 MEDAERVFASMLCRDYVSWNTLLSGLVQNELYRDALNYFRDMQNSAQKPDQVSVLNLIAA 358
Query: 228 CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
G + N G+++HA ++ GL+S+ + L+DMY KC ++ FE + +K++
Sbjct: 359 SGRSGNLLN-GKEVHAYAIRNGLDSNMQIGNTLIDMYAKCCCVKHMGYAFECM-HEKDLI 416
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
SW ++ GY +N ++EA ++ G+ + +I + ACS + +
Sbjct: 417 SWTTIIAGYAQNECHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKS 465
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 96/196 (48%), Gaps = 4/196 (2%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
+L CV + G+Q+H L K S + L L++ Y K L+DA VF ++
Sbjct: 52 LLDLCVAVKALPQGQQLHARLLK--SHLSAFLATKLLHMYEKCGSLKDAVKVFDEMTERT 109
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
W A + G + + +KEM + ++ TF SVLKACG + + G ++H
Sbjct: 110 IFTWNAMMGAFVSSGKYLEAIELYKEMRVLGVAIDACTFPSVLKACGALGES-RLGAEIH 168
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE-LIVDKKNIASWNAMLVGYIRNGL 301
VK G +V L+ MYGKC L A +F+ ++++K++ SWN+++ ++ G
Sbjct: 169 GVAVKCGFGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVTEGK 228
Query: 302 YVEATKFLYLMKASGI 317
+EA M+ G+
Sbjct: 229 CLEALSLFRRMQEVGV 244
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 70/306 (22%), Positives = 128/306 (41%), Gaps = 44/306 (14%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ C + F+ M +D SW +I GY + E I LF ++ + KG
Sbjct: 388 NTLIDMYAKCCCVKHMGYAFECMHEKDLISWTTIIAGYAQNECHLEAINLFRKV--QVKG 445
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ V P +I VL+AC + +++HG +FK + +I L +++N YG+ +
Sbjct: 446 --MDVDPM-MIGSVLRACSGLKSRNFIREIHGYVFKRDLA-DIMLQNAIVNVYGEVGHRD 501
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A F ++ + V WT+ I G + F + + I+ +S S L A
Sbjct: 502 YARRAFESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATA 561
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ G+++H +++ G + + LVDMY C + ++ ++F V ++++ W
Sbjct: 562 NLSSLKK-GKEIHGFLIRKGFFLEGPIASSLVDMYACCGTVENSRKMFH-SVKQRDLILW 619
Query: 290 NAM-----------------------------------LVGYIRNGLYVEATKFLYLMKA 314
+M L +GL VE +F +MK
Sbjct: 620 TSMINANGMHGCGNEAIALFKKMTDENVIPDHITFLALLYACSHSGLMVEGKRFFEIMK- 678
Query: 315 SGIQIQ 320
G Q++
Sbjct: 679 YGYQLE 684
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 117/254 (46%), Gaps = 17/254 (6%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
++ N ++ ++ G D AR+ F+ + +D SW MI V E + LF + +
Sbjct: 484 IMLQNAIVNVYGEVGHRDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQ 543
Query: 106 RKKGHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
+ P I I+ L A +++ GK++HG L + G + SL++ Y
Sbjct: 544 TN------IQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYAC 597
Query: 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
+E++ +F +K+ + ++WT+ I N G ++ FK+M E + + TF ++
Sbjct: 598 CGTVENSRKMFHSVKQRDLILWTSMINANGMHGCGNEAIALFKKMTDENVIPDHITFLAL 657
Query: 225 LKAC--GGVDDDGNCGRQMHANIVKIGLESD---EYVQCGLVDMYGKCRLLRDAERVFEL 279
L AC G+ +G + I+K G + + E+ C +VD+ + L +A +
Sbjct: 658 LYACSHSGLMVEG----KRFFEIMKYGYQLEPWPEHYAC-MVDLLSRSNSLEEAYQFVRS 712
Query: 280 IVDKKNIASWNAML 293
+ K + W A+L
Sbjct: 713 MPIKPSSEVWCALL 726
>gi|357168001|ref|XP_003581434.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
mitochondrial-like [Brachypodium distachyon]
Length = 757
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 79/283 (27%), Positives = 137/283 (48%), Gaps = 8/283 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ C ++AR +FDEMP ++ SWA +I + + + LF+ M++
Sbjct: 80 NHLITMYGRCAAPESARLVFDEMPAKNPVSWASVIAAHAQNRRSTDALGLFSSMLRSGTA 139
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ + ++AC ++ +G+QVH K + ++ + +L+ Y K +
Sbjct: 140 P-----DQFALGSTVRACAELGDIGVGRQVHAQAMKSENGSDLIVQNALVTMYSKSGLVA 194
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERI-KKNSYTFSSVLKAC 228
D +F +++ + + W + I ++G + F+EM E + N + F SV AC
Sbjct: 195 DGFLLFGRMREKDPISWGSIIAGFAQQGCEMEALQIFREMVAEGMHHPNEFHFGSVFSAC 254
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
GV G Q+H+ VK L+ + Y C L DMY +C+ L A+RVF I D ++ S
Sbjct: 255 -GVLGSLEYGEQIHSLSVKYRLDHNSYAGCSLSDMYARCKKLESAKRVFYGI-DAPDLVS 312
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
WN+++ GL EA L M+ SG++ + L AC
Sbjct: 313 WNSIINACSVEGLLSEAMVLLSEMRGSGLRPDGITVRGLLCAC 355
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 74/281 (26%), Positives = 133/281 (47%), Gaps = 8/281 (2%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+ C +L++A+++F + D SW +I E + L +EM R G +
Sbjct: 288 MYARCKKLESAKRVFYGIDAPDLVSWNSIINACSVEGLLSEAMVLLSEM--RGSG----L 341
Query: 115 FPAWIIV-CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADF 173
P I V +L ACV ++ G+ +H L KLG ++S+ SL++ Y + A
Sbjct: 342 RPDGITVRGLLCACVGCDAIQHGRLMHSYLVKLGLDGDVSVCNSLLSMYARCMDFSSAMD 401
Query: 174 VFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDD 233
VF + + + V W + + + H VF F + R + + ++VL A +
Sbjct: 402 VFHETRDRDVVTWNSILTACVQHQHLEVVFKLFNLLQRSLPSLDRISLNNVLSASAELGY 461
Query: 234 DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
+Q+H K+GL +D + GL+D Y KC L DA ++FE++ ++ SW++++
Sbjct: 462 F-EMVKQVHTCTFKVGLVNDTMLSNGLIDTYAKCGSLDDAVKLFEMMGTNSDVFSWSSLI 520
Query: 294 VGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
VGY ++G +A M+ G++ + ACS +
Sbjct: 521 VGYAQSGYPRKALDLFARMRNLGVRPNHVTFVGVLTACSRV 561
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/255 (28%), Positives = 115/255 (45%), Gaps = 8/255 (3%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L+ N L+ M+ G + LF M +D SW +I G+ E + +F EM+
Sbjct: 177 LIVQNALVTMYSKSGLVADGFLLFGRMREKDPISWGSIIAGFAQQGCEMEALQIFREMVA 236
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
H + V AC ++E G+Q+H L K N SL + Y +
Sbjct: 237 EGMHHP----NEFHFGSVFSACGVLGSLEYGEQIHSLSVKYRLDHNSYAGCSLSDMYARC 292
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCR-EGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
+ LE A VF + + V W + I+N C EG + EM ++ + T +
Sbjct: 293 KKLESAKRVFYGIDAPDLVSWNS-IINACSVEGLLSEAMVLLSEMRGSGLRPDGITVRGL 351
Query: 225 LKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
L AC G D + GR MH+ +VK+GL+ D V L+ MY +C A VF D +
Sbjct: 352 LCACVGCDAIQH-GRLMHSYLVKLGLDGDVSVCNSLLSMYARCMDFSSAMDVFHETRD-R 409
Query: 285 NIASWNAMLVGYIRN 299
++ +WN++L +++
Sbjct: 410 DVVTWNSILTACVQH 424
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 77/169 (45%), Gaps = 2/169 (1%)
Query: 150 RNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEM 209
RN L LI YG+ E A VF ++ N V W + I + + F M
Sbjct: 74 RNTVLNNHLITMYGRCAAPESARLVFDEMPAKNPVSWASVIAAHAQNRRSTDALGLFSSM 133
Query: 210 GRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRL 269
R + + S ++AC + D G GRQ+HA +K SD VQ LV MY K L
Sbjct: 134 LRSGTAPDQFALGSTVRACAELGDIG-VGRQVHAQAMKSENGSDLIVQNALVTMYSKSGL 192
Query: 270 LRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
+ D +F + +K I SW +++ G+ + G +EA + M A G+
Sbjct: 193 VADGFLLFGRMREKDPI-SWGSIIAGFAQQGCEMEALQIFREMVAEGMH 240
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/249 (25%), Positives = 108/249 (43%), Gaps = 10/249 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N LL M+ C +A +F E RD +W ++ V + LF +++R
Sbjct: 384 NSLLSMYARCMDFSSAMDVFHETRDRDVVTWNSILTACVQHQHLEVVFKLF-NLLQRS-- 440
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
L + VL A E+ KQVH FK+G + L+ LI+ Y K L+
Sbjct: 441 --LPSLDRISLNNVLSASAELGYFEMVKQVHTCTFKVGLVNDTMLSNGLIDTYAKCGSLD 498
Query: 170 DADFVFSQLKRHNTVV-WTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
DA +F + ++ V W++ IV + G+ + + F M ++ N TF VL AC
Sbjct: 499 DAVKLFEMMGTNSDVFSWSSLIVGYAQSGYPRKALDLFARMRNLGVRPNHVTFVGVLTAC 558
Query: 229 G--GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
G+ D+G C L + E+ C ++D+ + L +A + + + + +I
Sbjct: 559 SRVGLVDEG-CYYYSIMEPEHGVLPTREHCSC-VIDLLARAGRLTEAAKFVDQMPFEPDI 616
Query: 287 ASWNAMLVG 295
W +L G
Sbjct: 617 VMWKTLLAG 625
Score = 42.0 bits (97), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 11/105 (10%)
Query: 28 GAFELLNHIRK---RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL-RDFNSWAVM 83
G FE++ + +V + + N L+ + CG LD A +LF+ M D SW+ +
Sbjct: 460 GYFEMVKQVHTCTFKVGLVNDTMLSNGLIDTYAKCGSLDDAVKLFEMMGTNSDVFSWSSL 519
Query: 84 IVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI-IVCVLKAC 127
IVGY ++ + LFA M L V P + V VL AC
Sbjct: 520 IVGYAQSGYPRKALDLFARMRN------LGVRPNHVTFVGVLTAC 558
>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g03580-like [Vitis vinifera]
Length = 889
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 95/312 (30%), Positives = 153/312 (49%), Gaps = 17/312 (5%)
Query: 8 ITTDMYT--CLIKECTFQKDSAGAFELLNHIRKRV---NIKPTLLFLNRLLLMHVSCGQL 62
+ D YT +I C D FE+ I RV L N L+ M+ L
Sbjct: 111 LQPDTYTFPSVINACAGLLD----FEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDL 166
Query: 63 DTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVC 122
D AR++F+EMPLRD SW +I GY + E + ++ R G +V ++ +
Sbjct: 167 DKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRF--RNLG---VVPDSYTMSS 221
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
VL+AC ++E G +HGL+ K+G +++ + L++ Y KF L D +F ++ +
Sbjct: 222 VLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRD 281
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
V W I + G + + F EM + K + T +S+L+ACG + D G+ +H
Sbjct: 282 AVSWNTMICGYSQVGLYEESIKLFMEM-VNQFKPDLLTITSILQACGHL-GDLEFGKYVH 339
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
++ G E D L++MY KC L ++ VF + K ++ SWN+M+ YI+NG +
Sbjct: 340 DYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSV-SWNSMINVYIQNGSF 398
Query: 303 VEATKFLYLMKA 314
EA K +MK
Sbjct: 399 DEAMKLFKMMKT 410
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 88/308 (28%), Positives = 156/308 (50%), Gaps = 9/308 (2%)
Query: 31 ELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDV 90
++++ + +++ IK ++ N LL M+ L R++FD+M LRD SW MI GY V
Sbjct: 236 DIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQV 295
Query: 91 ADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSR 150
Y+E I LF EM+ + K +L I +L+AC ++E GK VH + G
Sbjct: 296 GLYEESIKLFMEMVNQFKPDLL------TITSILQACGHLGDLEFGKYVHDYMITSGYEC 349
Query: 151 NISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMG 210
+ + + LIN Y K L + VFS +K ++V W + I + G F + FK M
Sbjct: 350 DTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMM- 408
Query: 211 RERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLL 270
+ +K +S T+ +L + D + G+++H ++ K+G S+ V LVDMY KC +
Sbjct: 409 KTDVKPDSVTYVMLLSMSTQL-GDLHLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEM 467
Query: 271 RDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIA 330
D+ +VFE + ++I +WN ++ + + + + M+ G+ + + +
Sbjct: 468 GDSLKVFENM-KARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPV 526
Query: 331 CSSISASK 338
CS ++A +
Sbjct: 527 CSLLAAKR 534
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 122/243 (50%), Gaps = 13/243 (5%)
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN 132
P + W +I + E ++L++E + + FP+ V+ AC ++
Sbjct: 76 PSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPS-----VINACAGLLD 130
Query: 133 MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192
E+ K +H + +G ++ + +LI+ Y +F L+ A VF ++ + V W + I
Sbjct: 131 FEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISG 190
Query: 193 NCREGHFHQ---VFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIG 249
G++++ ++ F+ +G + +SYT SSVL+ACGG+ G +H I KIG
Sbjct: 191 YNANGYWNEALEIYYRFRNLG---VVPDSYTMSSVLRACGGLGSVEE-GDIIHGLIEKIG 246
Query: 250 LESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFL 309
++ D V GL+ MY K L D R+F+ +V ++ SWN M+ GY + GLY E+ K
Sbjct: 247 IKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMV-LRDAVSWNTMICGYSQVGLYEESIKLF 305
Query: 310 YLM 312
M
Sbjct: 306 MEM 308
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 79/284 (27%), Positives = 137/284 (48%), Gaps = 10/284 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ CG L ++++F M +D SW MI Y+ + E + LF +MMK
Sbjct: 355 NILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLF-KMMKTD-- 411
Query: 110 HMLLVFPAWIIVCVLKACVCTM-NMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
V P + +L + + ++ LGK++H L K+G + NI ++ +L++ Y K +
Sbjct: 412 ----VKPDSVTYVMLLSMSTQLGDLHLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEM 467
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
D+ VF +K + + W I + + M E + + T S+L C
Sbjct: 468 GDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVC 527
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
+ G+++H I K+GLESD V L++MY KC LR++ +VF+L+ K++ +
Sbjct: 528 SLLAAKRQ-GKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLM-KTKDVVT 585
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
W A++ G +A + M+A+GI + ACS
Sbjct: 586 WTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACS 629
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 99/200 (49%), Gaps = 3/200 (1%)
Query: 138 QVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTV-VWTAKIVNNCRE 196
++H L+ LG ++ + LI Y FR + VF N V +W + I
Sbjct: 34 KLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLASPSNNVYLWNSIIRALTHN 93
Query: 197 GHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYV 256
G F + + + E R R++ ++YTF SV+ AC G+ D + +H ++ +G SD Y+
Sbjct: 94 GLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLD-FEMAKSIHDRVLDMGFGSDLYI 152
Query: 257 QCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASG 316
L+DMY + L A +VFE + +++ SWN+++ GY NG + EA + Y + G
Sbjct: 153 GNALIDMYCRFNDLDKARKVFEEM-PLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLG 211
Query: 317 IQIQESLINDLRIACSSISA 336
+ ++ + AC + +
Sbjct: 212 VVPDSYTMSSVLRACGGLGS 231
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 115/259 (44%), Gaps = 13/259 (5%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
++ ++ N L+ M+ CG++ + ++F+ M RD +W +I V D +
Sbjct: 444 KMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLR 503
Query: 99 LFAEMMKRKKGHMLLVFPAW-IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGS 157
+ + M R +G V P ++ +L C GK++HG +FKLG ++ +
Sbjct: 504 MISRM--RTEG----VTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNV 557
Query: 158 LINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKN 217
LI Y K L ++ VF +K + V WTA I G + F EM I +
Sbjct: 558 LIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPD 617
Query: 218 SYTFSSVLKAC---GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAE 274
F +++ AC G V++ N +M + KI + Y C +VD+ + LL AE
Sbjct: 618 HVAFVAIIFACSHSGLVEEGLNYFHRMKKD-YKIEPRIEHYA-C-VVDLLSRSALLDKAE 674
Query: 275 RVFELIVDKKNIASWNAML 293
+ K + + W A+L
Sbjct: 675 DFILSMPLKPDSSIWGALL 693
>gi|115486035|ref|NP_001068161.1| Os11g0583200 [Oryza sativa Japonica Group]
gi|113645383|dbj|BAF28524.1| Os11g0583200 [Oryza sativa Japonica Group]
Length = 703
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 79/249 (31%), Positives = 125/249 (50%), Gaps = 9/249 (3%)
Query: 53 LLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHML 112
L M+ G+L AR LF EMP R+ +W ++ V D + T+ A R+ G +
Sbjct: 161 LDMYFKTGRLKLARHLFGEMPNRNVVAWNAVMTN--AVLDGRPLETIEAYFGLREAGGL- 217
Query: 113 LVFPAWIIVCVL-KACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
P + C AC M + LG+Q HG + K G ++S+ S+++FYGK RC A
Sbjct: 218 ---PNVVSACAFFNACAGAMYLSLGEQFHGFVVKCGFEMDVSVLNSMVDFYGKCRCAGKA 274
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
VF + N+V W + + + G + F + R + + SS L C G+
Sbjct: 275 RAVFDGMGVRNSVSWCSMVAAYAQNGAEEEAFAAYLGARRSGEEPTDFMVSSALTTCAGL 334
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
+ GR +HA V+ ++++ +V LVDMYGKC + DAE++F ++N+ +WNA
Sbjct: 335 LGL-HLGRALHAVAVRSCIDANIFVASALVDMYGKCGCVEDAEQIF-YETPQRNLVTWNA 392
Query: 292 MLVGYIRNG 300
M+ GY G
Sbjct: 393 MIGGYAHIG 401
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/287 (24%), Positives = 121/287 (42%), Gaps = 17/287 (5%)
Query: 16 LIKECTFQKDSAGAF-----ELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFD 70
++ C F AGA E + + + + LN ++ + C AR +FD
Sbjct: 220 VVSACAFFNACAGAMYLSLGEQFHGFVVKCGFEMDVSVLNSMVDFYGKCRCAGKARAVFD 279
Query: 71 EMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCT 130
M +R+ SW M+ Y +E + + R+ G F ++ L C
Sbjct: 280 GMGVRNSVSWCSMVAAYAQNGAEEEAFAAY--LGARRSGEEPTDF---MVSSALTTCAGL 334
Query: 131 MNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKI 190
+ + LG+ +H + + NI + +L++ YGK C+EDA+ +F + + N V W A I
Sbjct: 335 LGLHLGRALHAVAVRSCIDANIFVASALVDMYGKCGCVEDAEQIFYETPQRNLVTWNAMI 394
Query: 191 VNNCREGHFHQVFNDFKEMGRE-RIKKNSYTFSSVLKAC--GGVDDDGNCGRQMHANIVK 247
G F +M R N T +V+ +C GG+ DG +
Sbjct: 395 GGYAHIGDAQNALLVFDDMIRSGETAPNYITLVNVITSCSRGGLTKDGY--ELFETMRER 452
Query: 248 IGLES-DEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
G+E E+ C +VD+ G+ + A V + + + +I+ W A+L
Sbjct: 453 FGIEPRTEHYAC-VVDLLGRAGMEEQAYEVIQGMPMRPSISVWGALL 498
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 91/201 (45%), Gaps = 5/201 (2%)
Query: 119 IIVCVLKACVCTMNMELGKQVHGLLFKL-GSSRNISLTGSLINFYGKFRCLEDADFVFSQ 177
++ ++ + + + LG+ H +L + + + L+N Y K L A
Sbjct: 17 LLAAAFESAIASRSPRLGRAAHARALRLIAPALSPFICAHLVNLYSKLD-LPAAAAAALA 75
Query: 178 LKRHNTVV-WTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGN 236
H TVV +TA I + G + F M R ++ N +TF S KA
Sbjct: 76 SDPHPTVVSYTAFISGAAQHGRPLPALSAFAGMLRLGLRPNDFTFPSAFKAAASAPPRST 135
Query: 237 CGRQMHANIVKIG-LESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
G Q+H+ ++ G L D +V C +DMY K L+ A +F + + +N+ +WNA++
Sbjct: 136 IGPQIHSLAIRFGYLPVDPFVSCAALDMYFKTGRLKLARHLFGEMPN-RNVVAWNAVMTN 194
Query: 296 YIRNGLYVEATKFLYLMKASG 316
+ +G +E + + ++ +G
Sbjct: 195 AVLDGRPLETIEAYFGLREAG 215
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/257 (23%), Positives = 103/257 (40%), Gaps = 7/257 (2%)
Query: 79 SWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQ 138
S+ I G ++ FA M++ FP+ A +G Q
Sbjct: 84 SYTAFISGAAQHGRPLPALSAFAGMLRLGLRPNDFTFPS----AFKAAASAPPRSTIGPQ 139
Query: 139 VHGLLFKLGS-SRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREG 197
+H L + G + ++ + ++ Y K L+ A +F ++ N V W A + N +G
Sbjct: 140 IHSLAIRFGYLPVDPFVSCAALDMYFKTGRLKLARHLFGEMPNRNVVAWNAVMTNAVLDG 199
Query: 198 HFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQ 257
+ + + N + + AC G + G Q H +VK G E D V
Sbjct: 200 RPLETIEAYFGLREAGGLPNVVSACAFFNACAGAMYL-SLGEQFHGFVVKCGFEMDVSVL 258
Query: 258 CGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGI 317
+VD YGKCR A VF+ + +N SW +M+ Y +NG EA + SG
Sbjct: 259 NSMVDFYGKCRCAGKARAVFDGM-GVRNSVSWCSMVAAYAQNGAEEEAFAAYLGARRSGE 317
Query: 318 QIQESLINDLRIACSSI 334
+ + +++ C+ +
Sbjct: 318 EPTDFMVSSALTTCAGL 334
>gi|224108029|ref|XP_002314694.1| predicted protein [Populus trichocarpa]
gi|222863734|gb|EEF00865.1| predicted protein [Populus trichocarpa]
Length = 631
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 98/294 (33%), Positives = 144/294 (48%), Gaps = 24/294 (8%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+ G A++LFDEMP R+ W I V + I F E + L+
Sbjct: 102 MYSKTGLKFEAQRLFDEMPPRNVAVWNAYISNAVLDGRPGKAIDKFIEFRRVGGEPDLIT 161
Query: 115 FPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFV 174
F A++ C C ++LG+Q+HGL+ + G ++S+ +I+ YGK + +E A+ V
Sbjct: 162 FCAFLNACADARC-----LDLGRQLHGLVIRSGFEGDVSVANGIIDVYGKCKEVELAEMV 216
Query: 175 FSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKE-------MGR-ERIKKNSYTFSSVLK 226
F+ + R N+V W +V C + ND KE MGR E I+ Y SSV+
Sbjct: 217 FNGMGRRNSVSWCT-MVAACEQ-------NDEKEKACVVFLMGRKEGIELTDYMVSSVIS 268
Query: 227 ACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
A G+ GR +HA VK +E D +V LVDMYGKC + D E+VF + + +N+
Sbjct: 269 AYAGISGL-EFGRSVHALAVKACVEGDIFVGSALVDMYGKCGSIEDCEQVFHEMPE-RNL 326
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKIN 340
SWNAM+ GY G A M++ + +LI L ACS A K+
Sbjct: 327 VSWNAMISGYAHQGDVDMAMTLFEEMQSEAVANYVTLICVLS-ACSRGGAVKLG 379
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 73/277 (26%), Positives = 122/277 (44%), Gaps = 13/277 (4%)
Query: 63 DTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVC 122
+ A+ L P R +W +I G V + + F++M + FP C
Sbjct: 9 NPAQLLLQLTPTRCVVTWTALISGSVQNGYFSSALLYFSKMRRENIKPNDFTFP-----C 63
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
KA GKQ+H + KLG + + S + Y K +A +F ++ N
Sbjct: 64 AFKASTALCLPFAGKQIHAIALKLGQINDKFVGCSAFDMYSKTGLKFEAQRLFDEMPPRN 123
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC---GR 239
VW A I N +G + + F E R + + TF + L AC D C GR
Sbjct: 124 VAVWNAYISNAVLDGRPGKAIDKFIEFRRVGGEPDLITFCAFLNACA----DARCLDLGR 179
Query: 240 QMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRN 299
Q+H +++ G E D V G++D+YGKC+ + AE VF + ++N SW M+ +N
Sbjct: 180 QLHGLVIRSGFEGDVSVANGIIDVYGKCKEVELAEMVFNGM-GRRNSVSWCTMVAACEQN 238
Query: 300 GLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+A + + GI++ + +++ + A + IS
Sbjct: 239 DEKEKACVVFLMGRKEGIELTDYMVSSVISAYAGISG 275
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 112/246 (45%), Gaps = 10/246 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N ++ ++ C +++ A +F+ M R+ SW M+ + ++ +F +M RK+G
Sbjct: 198 NGIIDVYGKCKEVELAEMVFNGMGRRNSVSWCTMVAACEQNDEKEKACVVF--LMGRKEG 255
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ +++ V+ A +E G+ VH L K +I + +L++ YGK +E
Sbjct: 256 ---IELTDYMVSSVISAYAGISGLEFGRSVHALAVKACVEGDIFVGSALVDMYGKCGSIE 312
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC- 228
D + VF ++ N V W A I +G F+EM E + N T VL AC
Sbjct: 313 DCEQVFHEMPERNLVSWNAMISGYAHQGDVDMAMTLFEEMQSEAVA-NYVTLICVLSACS 371
Query: 229 -GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
GG GN + + +I ++ Y C + DM G+ ++ A + + + I+
Sbjct: 372 RGGAVKLGNEIFESMRDRYRIEPGAEHYA-C-IADMLGRAGMVERAYEFVQKMPIRPTIS 429
Query: 288 SWNAML 293
W A+L
Sbjct: 430 VWGALL 435
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 76/160 (47%), Gaps = 11/160 (6%)
Query: 162 YGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTF 221
Y K A + V WTA I + + G+F F +M RE IK N +TF
Sbjct: 2 YSKLDLPNPAQLLLQLTPTRCVVTWTALISGSVQNGYFSSALLYFSKMRRENIKPNDFTF 61
Query: 222 SSVLKACGGVDDDGNC----GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVF 277
KA + C G+Q+HA +K+G +D++V C DMY K L +A+R+F
Sbjct: 62 PCAFKASTAL-----CLPFAGKQIHAIALKLGQINDKFVGCSAFDMYSKTGLKFEAQRLF 116
Query: 278 ELIVDKKNIASWNAMLVGYIRNGLYVEAT-KFLYLMKASG 316
+ + +N+A WNA + + +G +A KF+ + G
Sbjct: 117 DEM-PPRNVAVWNAYISNAVLDGRPGKAIDKFIEFRRVGG 155
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 65/146 (44%), Gaps = 9/146 (6%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ CG ++ Q+F EMP R+ SW MI GY D +TLF EM +
Sbjct: 301 LVDMYGKCGSIEDCEQVFHEMPERNLVSWNAMISGYAHQGDVDMAMTLFEEMQSEAVANY 360
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQV-HGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
+ ++CVL AC ++LG ++ + + + + G+ +E
Sbjct: 361 V------TLICVLSACSRGGAVKLGNEIFESMRDRYRIEPGAEHYACIADMLGRAGMVER 414
Query: 171 A-DFVFSQLKRHNTVVWTAKIVNNCR 195
A +FV R VW A ++N CR
Sbjct: 415 AYEFVQKMPIRPTISVWGA-LLNACR 439
>gi|255559100|ref|XP_002520572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540232|gb|EEF41805.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 695
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 86/306 (28%), Positives = 147/306 (48%), Gaps = 16/306 (5%)
Query: 29 AFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYV 88
AF + NH V + LN +L+M+ C + T+ ++F++MP +D SW MI G++
Sbjct: 228 AFTMKNHTVLSVTV------LNAILVMYSRCNSVQTSFEVFEKMPEKDVVSWNTMISGFI 281
Query: 89 DVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGS 148
+E + L EM K+ + + + +L A N E+GKQ H L + G
Sbjct: 282 QNGLDEEGLMLVYEMQKQG-----FIADSVTVTSLLSAASNLRNREIGKQTHAYLIRHGI 336
Query: 149 SRNISLTGSLINFYGKFRCLEDADFVF--SQLKRHNTVVWTAKIVNNCREGHFHQVFNDF 206
+ + LI+ Y K + + VF + ++ + W A I + G Q F F
Sbjct: 337 KFD-GMDSYLIDMYAKSGLIRISQRVFENNNIQNRDQATWNAVIAGYTQNGLVEQAFITF 395
Query: 207 KEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGK 266
+ M + ++ N+ T +S+L AC + N G+Q+H ++ L+ + +V+ LVDMY K
Sbjct: 396 RLMLEQNLRPNAVTLASILPACSSLGSI-NLGKQLHGVSIRYSLDQNIFVRTALVDMYSK 454
Query: 267 CRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLIND 326
+ AE VF ++N ++ M++GY ++G+ A + MK SGIQ
Sbjct: 455 SGAINYAESVFTQ-SSERNSVTYTTMILGYGQHGMGENALSLFHSMKKSGIQPDAITFVA 513
Query: 327 LRIACS 332
+ ACS
Sbjct: 514 VLSACS 519
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 73/292 (25%), Positives = 140/292 (47%), Gaps = 7/292 (2%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L ++ + M+ G LD R++FD + W MI G++ + E + LF + MK
Sbjct: 137 LFVVSSAISMYAELGCLDLCRKVFDSCLEKSAEVWNTMIGGHIQNNSFLEGVYLFLQAMK 196
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
+ H +L + L A + LG+Q+H K + ++++ +++ Y +
Sbjct: 197 TE--HTIL--DDVTFLSALTAVSQLQCLGLGQQMHAFTMKNHTVLSVTVLNAILVMYSRC 252
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
++ + VF ++ + V W I + G + EM ++ +S T +S+L
Sbjct: 253 NSVQTSFEVFEKMPEKDVVSWNTMISGFIQNGLDEEGLMLVYEMQKQGFIADSVTVTSLL 312
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELI-VDKK 284
A + + G+Q HA +++ G++ D + L+DMY K L+R ++RVFE + +
Sbjct: 313 SAASNLRNR-EIGKQTHAYLIRHGIKFDG-MDSYLIDMYAKSGLIRISQRVFENNNIQNR 370
Query: 285 NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+ A+WNA++ GY +NGL +A LM ++ + + ACSS+ +
Sbjct: 371 DQATWNAVIAGYTQNGLVEQAFITFRLMLEQNLRPNAVTLASILPACSSLGS 422
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/277 (27%), Positives = 124/277 (44%), Gaps = 12/277 (4%)
Query: 67 QLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI-IVCVLK 125
++F M RD +W M+ YV Y E I F MMK + P+ + V V
Sbjct: 55 KVFKTMHKRDVIAWNTMVSWYVKTERYVEAIRQFRLMMKWG------IKPSPVSFVNVFP 108
Query: 126 ACVCTMNMELGKQVHGLLFKLGS--SRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNT 183
A + + ++G+L KLG+ + ++ + S I+ Y + CL+ VF +
Sbjct: 109 AISSVGDFKNANVLYGMLLKLGNEYANDLFVVSSAISMYAELGCLDLCRKVFDSCLEKSA 168
Query: 184 VVWTAKIVNNCREGHFHQ-VFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
VW I + + F + V+ + M E + TF S L A + G G+QMH
Sbjct: 169 EVWNTMIGGHIQNNSFLEGVYLFLQAMKTEHTILDDVTFLSALTAVSQLQCLG-LGQQMH 227
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
A +K V ++ MY +C ++ + VFE + +K++ SWN M+ G+I+NGL
Sbjct: 228 AFTMKNHTVLSVTVLNAILVMYSRCNSVQTSFEVFEKM-PEKDVVSWNTMISGFIQNGLD 286
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIACSSISASKI 339
E +Y M+ G + L A S++ +I
Sbjct: 287 EEGLMLVYEMQKQGFIADSVTVTSLLSAASNLRNREI 323
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 116/247 (46%), Gaps = 12/247 (4%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPL--RDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
L+ M+ G + ++++F+ + RD +W +I GY ++ F M+++
Sbjct: 345 LIDMYAKSGLIRISQRVFENNNIQNRDQATWNAVIAGYTQNGLVEQAFITFRLMLEQN-- 402
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
L A + +L AC ++ LGKQ+HG+ + +NI + +L++ Y K +
Sbjct: 403 ---LRPNAVTLASILPACSSLGSINLGKQLHGVSIRYSLDQNIFVRTALVDMYSKSGAIN 459
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC- 228
A+ VF+Q N+V +T I+ + G + F M + I+ ++ TF +VL AC
Sbjct: 460 YAESVFTQSSERNSVTYTTMILGYGQHGMGENALSLFHSMKKSGIQPDAITFVAVLSACS 519
Query: 229 -GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKC-RLLRDAERVFELIVDKKNI 286
G+ D+G + KI + Y C + DM G+ R++ E V +L + I
Sbjct: 520 YAGLVDEGLRIFESMKRDFKIQPSTAHY--CCVADMLGRVGRVIEAYEFVKQLGEEGHVI 577
Query: 287 ASWNAML 293
W ++L
Sbjct: 578 EIWGSLL 584
>gi|38606535|emb|CAE06013.3| OSJNBa0016O02.23 [Oryza sativa Japonica Group]
gi|116310014|emb|CAH67039.1| OSIGBa0124N08.1 [Oryza sativa Indica Group]
gi|116310420|emb|CAH67428.1| OSIGBa0150F01.8 [Oryza sativa Indica Group]
Length = 939
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 98/326 (30%), Positives = 147/326 (45%), Gaps = 11/326 (3%)
Query: 7 PITTDMYTCLIKECTFQKDSAGAFELLNHI--RKRVNIKPTLLFLNRLLLMHVSCGQLDT 64
P TD Y ++ ++ + +L H + +LL M+ CG+L
Sbjct: 52 PPPTDHYGWVLDLVAVRRAVSEGRQLHAHAVATGALGDDDAGFLATKLLFMYGKCGRLPD 111
Query: 65 ARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCV 123
A +LFD MP R SW +I + E + ++ M R + P + V
Sbjct: 112 AHRLFDGMPARTVFSWNALIGACLSSGGAGEAVGVYRAM--RASEPVAGAAPDGCTLASV 169
Query: 124 LKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNT 183
LKAC + G +VHGL K G R+ + +L+ Y K L+ A VF ++
Sbjct: 170 LKACGAEGDGRCGSEVHGLAVKSGLDRSTLVANALVGMYAKCGLLDSALRVFEWMRDGRD 229
Query: 184 VV-WTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
V W + I + G F + + F+ M + NSYT VL+ C + N GR++H
Sbjct: 230 VASWNSAISGCVQNGMFLEALDLFRRMQSDGFSMNSYTTVGVLQVCAELAQL-NHGRELH 288
Query: 243 ANIVKIGLESDEYVQC-GLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGL 301
A ++K G E + +QC L+ MY +C + A RVF I DK I SWN+ML Y++N L
Sbjct: 289 AALLKCGTEFN--IQCNALLVMYARCGWVDSALRVFREIGDKDYI-SWNSMLSCYVQNRL 345
Query: 302 YVEATKFLYLMKASGIQIQESLINDL 327
Y EA F M +G + I L
Sbjct: 346 YAEAIDFFGEMVQNGFNPDHACIVSL 371
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 77/271 (28%), Positives = 136/271 (50%), Gaps = 12/271 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR--K 107
N LL+M+ CG +D+A ++F E+ +D+ SW M+ YV Y E I F EM++
Sbjct: 303 NALLVMYARCGWVDSALRVFREIGDKDYISWNSMLSCYVQNRLYAEAIDFFGEMVQNGFN 362
Query: 108 KGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
H IV +L A + G++VH K ++ + +L++ Y K
Sbjct: 363 PDHA-------CIVSLLSAVGHLGRLINGREVHAYAVKQRLDSDLQIANTLMDMYIKCYS 415
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
+E + VF +++ + V WT I + + + F+ +E IK + S+L+A
Sbjct: 416 VECSARVFDRMRIKDHVSWTTIIACYAQSSRYSEAIGKFRTAQKEGIKVDPMMMGSILEA 475
Query: 228 CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
C G+ + +Q+H+ ++ GL D ++ ++D+YG+C + A +FE++ DKK+I
Sbjct: 476 CSGLKSI-SLLKQVHSYAIRNGL-LDLILKNRIIDIYGECGEVCYALNIFEML-DKKDIV 532
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
+W +M+ + NGL EA M +GIQ
Sbjct: 533 TWTSMVNCFAENGLLHEAVALFGKMLNAGIQ 563
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 81/322 (25%), Positives = 148/322 (45%), Gaps = 10/322 (3%)
Query: 16 LIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM-PL 74
++K C + D E+ + + + + + L N L+ M+ CG LD+A ++F+ M
Sbjct: 169 VLKACGAEGDGRCGSEV-HGLAVKSGLDRSTLVANALVGMYAKCGLLDSALRVFEWMRDG 227
Query: 75 RDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNME 134
RD SW I G V + E + LF M ++ V VL+ C +
Sbjct: 228 RDVASWNSAISGCVQNGMFLEALDLFRRMQSDG-----FSMNSYTTVGVLQVCAELAQLN 282
Query: 135 LGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNC 194
G+++H L K G+ NI +L+ Y + ++ A VF ++ + + W + +
Sbjct: 283 HGRELHAALLKCGTEFNIQCN-ALLVMYARCGWVDSALRVFREIGDKDYISWNSMLSCYV 341
Query: 195 REGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDE 254
+ + + + F EM + + S+L A G + N GR++HA VK L+SD
Sbjct: 342 QNRLYAEAIDFFGEMVQNGFNPDHACIVSLLSAVGHLGRLIN-GREVHAYAVKQRLDSDL 400
Query: 255 YVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKA 314
+ L+DMY KC + + RVF+ + K ++ SW ++ Y ++ Y EA +
Sbjct: 401 QIANTLMDMYIKCYSVECSARVFDRMRIKDHV-SWTTIIACYAQSSRYSEAIGKFRTAQK 459
Query: 315 SGIQIQESLINDLRIACSSISA 336
GI++ ++ + ACS + +
Sbjct: 460 EGIKVDPMMMGSILEACSGLKS 481
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 71/238 (29%), Positives = 107/238 (44%), Gaps = 16/238 (6%)
Query: 91 ADYQECITLFAEMMKRKKGHMLLVFPAWII--VCVLKACVCTMNMELGKQVHGLLFK--- 145
D +E + A R + W++ V V +A + G+Q+H
Sbjct: 33 GDLREALRQLAARSARGRAPPPTDHYGWVLDLVAVRRA------VSEGRQLHAHAVATGA 86
Query: 146 LGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFND 205
LG L L+ YGK L DA +F + W A I G +
Sbjct: 87 LGDDDAGFLATKLLFMYGKCGRLPDAHRLFDGMPARTVFSWNALIGACLSSGGAGEAVGV 146
Query: 206 FKEM-GRERIK---KNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLV 261
++ M E + + T +SVLKACG + DG CG ++H VK GL+ V LV
Sbjct: 147 YRAMRASEPVAGAAPDGCTLASVLKACG-AEGDGRCGSEVHGLAVKSGLDRSTLVANALV 205
Query: 262 DMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQI 319
MY KC LL A RVFE + D +++ASWN+ + G ++NG+++EA M++ G +
Sbjct: 206 GMYAKCGLLDSALRVFEWMRDGRDVASWNSAISGCVQNGMFLEALDLFRRMQSDGFSM 263
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/287 (25%), Positives = 126/287 (43%), Gaps = 8/287 (2%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L N L+ M++ C ++ + ++FD M ++D SW +I Y + Y E I F K
Sbjct: 400 LQIANTLMDMYIKCYSVECSARVFDRMRIKDHVSWTTIIACYAQSSRYSEAIGKFRTAQK 459
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
+ V P ++ +L+AC ++ L KQVH + G ++ L +I+ YG+
Sbjct: 460 EG----IKVDPM-MMGSILEACSGLKSISLLKQVHSYAIRNG-LLDLILKNRIIDIYGEC 513
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
+ A +F L + + V WT+ + G H+ F +M I+ +S +L
Sbjct: 514 GEVCYALNIFEMLDKKDIVTWTSMVNCFAENGLLHEAVALFGKMLNAGIQPDSVALVGIL 573
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
A G+ G+++H +++ + V LVDMY C + A +VF+ K+
Sbjct: 574 GAIAGLSSLTK-GKEIHGFLIRGKFPVEGAVVSSLVDMYSGCGSMNYALKVFDE-AKCKD 631
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+ W AM+ +G +A M +G+ L ACS
Sbjct: 632 VVLWTAMINATGMHGHGKQAIYIFKRMLETGVSPDHVSFLALLYACS 678
>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
Length = 705
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 88/310 (28%), Positives = 147/310 (47%), Gaps = 31/310 (10%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMI--------------------- 84
+ +N L+ M+ CG L +AR LFD+M RD SW+ MI
Sbjct: 144 VFVVNALMQMYSECGSLVSARLLFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAM 203
Query: 85 -VGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGL 142
GY+ D +E LF M++ VFP I ++ ++ +C ++LGK++H
Sbjct: 204 IAGYIRCNDLEEGERLFVRMIEEN------VFPNDITMLSLIISCGFVGAVQLGKRLHAY 257
Query: 143 LFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQV 202
+ + G +++L +L++ YGK + A +F +K + + WTA I +
Sbjct: 258 ILRNGFGMSLALATALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYA 317
Query: 203 FNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVD 262
F F +M ++ N T S+L C V+ + G+ HA I K G+E D ++ L+D
Sbjct: 318 FQLFVQMRDNGVRPNELTMVSLLSLC-AVNGALDMGKWFHAYIDKQGVEVDVILKTALID 376
Query: 263 MYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQES 322
MY KC + A+R+F +D ++I +WN M+ GY +G +A K M+ G++ +
Sbjct: 377 MYAKCGDISGAQRLFSEAID-RDICTWNVMMAGYGMHGYGEKALKLFTEMETLGVKPNDI 435
Query: 323 LINDLRIACS 332
ACS
Sbjct: 436 TFIGALHACS 445
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 111/257 (43%), Gaps = 17/257 (6%)
Query: 45 TLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMM 104
+L L+ M+ CG++ +AR +FD M +D +W MI Y LF +M
Sbjct: 266 SLALATALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQM- 324
Query: 105 KRKKGHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYG 163
R G V P + +V +L C +++GK H + K G ++ L +LI+ Y
Sbjct: 325 -RDNG----VRPNELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEVDVILKTALIDMYA 379
Query: 164 KFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSS 223
K + A +FS+ + W + G+ + F EM +K N TF
Sbjct: 380 KCGDISGAQRLFSEAIDRDICTWNVMMAGYGMHGYGEKALKLFTEMETLGVKPNDITFIG 439
Query: 224 VLKACGG----VDDDGNCGRQMHANIVKIGLESD-EYVQCGLVDMYGKCRLLRDAERVFE 278
L AC V+ G + +H GL E+ C +VD+ G+ LL +A ++ E
Sbjct: 440 ALHACSHAGLVVEGKGLFEKMIH----DFGLVPKVEHYGC-MVDLLGRAGLLDEAYKMIE 494
Query: 279 LIVDKKNIASWNAMLVG 295
+ NIA W AML
Sbjct: 495 SMPVTPNIAIWGAMLAA 511
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 102/238 (42%), Gaps = 24/238 (10%)
Query: 117 AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFS 176
++II VLKAC +GK++HG K G ++ + +L+ Y + L A +F
Sbjct: 109 SFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVVNALMQMYSECGSLVSARLLFD 168
Query: 177 QLKRHNT----------------------VVWTAKIVNNCREGHFHQVFNDFKEMGRERI 214
++ + V WTA I R + F M E +
Sbjct: 169 KMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGYIRCNDLEEGERLFVRMIEENV 228
Query: 215 KKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAE 274
N T S++ +CG V G+++HA I++ G + LVDMYGKC +R A
Sbjct: 229 FPNDITMLSLIISCGFVGAV-QLGKRLHAYILRNGFGMSLALATALVDMYGKCGEIRSAR 287
Query: 275 RVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+F+ + K++ +W AM+ Y + A + M+ +G++ E + L C+
Sbjct: 288 AIFDSM-KNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDNGVRPNELTMVSLLSLCA 344
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 71/165 (43%), Gaps = 22/165 (13%)
Query: 196 EGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEY 255
E H N + M + I+ +S+ SVLKAC + G+++H VK GL SD +
Sbjct: 87 ESHPRYALNTYTYMRKLDIEVDSFIIPSVLKACSQISV-ARMGKEIHGFSVKNGLVSDVF 145
Query: 256 VQCGLVDMYGKCRLLRDAERVFELIVDK---------------------KNIASWNAMLV 294
V L+ MY +C L A +F+ + ++ ++I SW AM+
Sbjct: 146 VVNALMQMYSECGSLVSARLLFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIA 205
Query: 295 GYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKI 339
GYIR E + M + + + L I+C + A ++
Sbjct: 206 GYIRCNDLEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQL 250
>gi|449500331|ref|XP_004161068.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g33680-like [Cucumis sativus]
Length = 710
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 91/290 (31%), Positives = 138/290 (47%), Gaps = 13/290 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+ L+ M+ G + AR++FD +P R+ SWA +I GY E LF +M+R++G
Sbjct: 152 SSLINMYCKIGCMLDARKVFDTIPERNTVSWATIISGYAMERMAFEAWELFX-LMRREEG 210
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+I VL A + GKQ+H L K G S+ +L+ YGK CL+
Sbjct: 211 ----AHDKFIYTSVLSALTVPDLVHYGKQIHCLALKNGLLSIASVGNALVTMYGKCGCLD 266
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC- 228
DA F + + W+A I + G H+ N F M K + +TF V+ AC
Sbjct: 267 DALKTFELSGDKDDITWSAMITGYAQAGDSHEALNLFYNMHLNGNKPSEFTFVGVINACS 326
Query: 229 --GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
G +++ G+Q+H +K G E Y LVDMY KC L DA + F+ + + +I
Sbjct: 327 DIGALEE----GKQIHGYSLKAGYECQIYFMTALVDMYAKCGSLVDARKGFDYL-KEPDI 381
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
W +M+ GY +NG A M+ I E + + ACSS++A
Sbjct: 382 VLWTSMISGYAQNGENETALTLYCRMQMERIMPHELTMASVLRACSSLAA 431
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 82/252 (32%), Positives = 119/252 (47%), Gaps = 9/252 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ CG LD A + F+ +D +W+ MI GY D E + LF M
Sbjct: 253 NALVTMYGKCGCLDDALKTFELSGDKDDITWSAMITGYAQAGDSHEALNLFYNM------ 306
Query: 110 HMLLVFPA-WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
H+ P+ + V V+ AC +E GKQ+HG K G I +L++ Y K L
Sbjct: 307 HLNGNKPSEFTFVGVINACSDIGALEEGKQIHGYSLKAGYECQIYFMTALVDMYAKCGSL 366
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
DA F LK + V+WT+ I + G + M ERI + T +SVL+AC
Sbjct: 367 VDARKGFDYLKEPDIVLWTSMISGYAQNGENETALTLYCRMQMERIMPHELTMASVLRAC 426
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
+ G+Q+HA +K G + + L MY KC L D VF + ++I +
Sbjct: 427 SSLAALEQ-GKQIHAQTIKYGFSLEVPIGSALSTMYAKCGSLEDGNLVFRRM-PSRDIMT 484
Query: 289 WNAMLVGYIRNG 300
WNAM+ G +NG
Sbjct: 485 WNAMISGLSQNG 496
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 103/341 (30%), Positives = 147/341 (43%), Gaps = 16/341 (4%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCG 60
M+ LP + L+ CT QKD + + R ++ N L+ ++ CG
Sbjct: 1 MNLYLLPPQHRSFVDLLLRCTRQKDLQKGKAIHAQLL-RTGSFSSVYLTNSLVNLYAKCG 59
Query: 61 QLDTARQLFDEMPLRDFNSWAVMIVGYVD--VADYQECITLFAEMMKR---KKGHMLLVF 115
+ A+ +F+ + +D SW +I GY Y + LF M GH
Sbjct: 60 SIVKAKLVFESITNKDVVSWNCLINGYSQKGTVGYSFVMELFQRMRAENTLPNGHTF--- 116
Query: 116 PAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVF 175
V A + G Q H L K + ++ + SLIN Y K C+ DA VF
Sbjct: 117 -----SGVFTAASSSPETFGGLQAHALAIKTSNFYDVFVGSSLINMYCKIGCMLDARKVF 171
Query: 176 SQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDG 235
+ NTV W I E + + F M RE + + ++SVL A V D
Sbjct: 172 DTIPERNTVSWATIISGYAMERMAFEAWELFXLMRREEGAHDKFIYTSVLSAL-TVPDLV 230
Query: 236 NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
+ G+Q+H +K GL S V LV MYGKC L DA + FEL DK +I +W+AM+ G
Sbjct: 231 HYGKQIHCLALKNGLLSIASVGNALVTMYGKCGCLDDALKTFELSGDKDDI-TWSAMITG 289
Query: 296 YIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
Y + G EA Y M +G + E + ACS I A
Sbjct: 290 YAQAGDSHEALNLFYNMHLNGNKPSEFTFVGVINACSDIGA 330
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 114/257 (44%), Gaps = 12/257 (4%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEM-M 104
+ F+ L+ M+ CG L AR+ FD + D W MI GY + + +TL+ M M
Sbjct: 350 IYFMTALVDMYAKCGSLVDARKGFDYLKEPDIVLWTSMISGYAQNGENETALTLYCRMQM 409
Query: 105 KRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
+R H L + VL+AC +E GKQ+H K G S + + +L Y K
Sbjct: 410 ERIMPHEL------TMASVLRACSSLAALEQGKQIHAQTIKYGFSLEVPIGSALSTMYAK 463
Query: 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
LED + VF ++ + + W A I + G + F+E+ K + TF +V
Sbjct: 464 CGSLEDGNLVFRRMPSRDIMTWNAMISGLSQNGEGLKALELFEELRHGTTKPDYVTFVNV 523
Query: 225 LKACG--GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282
L AC G+ + G +M + I + E+ C +VD+ + L + + E
Sbjct: 524 LSACSHMGLVERGKVYFRMMLDEFGI-VPRVEHYAC-MVDILSRAGKLHETKEFIESATI 581
Query: 283 KKNIASWNAMLVGYIRN 299
+ W +L+G RN
Sbjct: 582 DHGMCLWR-ILLGACRN 597
>gi|297795827|ref|XP_002865798.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297311633|gb|EFH42057.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 701
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 82/275 (29%), Positives = 133/275 (48%), Gaps = 7/275 (2%)
Query: 43 KPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAE 102
+P +NR+LLMHV CG + AR+LFDEMP R+ S+ +I G+V+ +Y+E LF
Sbjct: 155 EPEKYMMNRILLMHVKCGMIIDARRLFDEMPERNLFSYNSIISGFVNFGNYEEAFELFKL 214
Query: 103 MMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFY 162
M + F +L+A ++ +GKQ+H KLG N ++ LI+ Y
Sbjct: 215 MWEELSDCETHTF-----AVMLRASAGLWSVYVGKQLHVCALKLGVVDNTFVSCGLIDMY 269
Query: 163 GKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFS 222
K +EDA F + TV W + G+ + EM + + +T S
Sbjct: 270 SKCGDIEDARCAFESMPEKTTVAWNNIVAGYALHGYSEEALCLLYEMRDSGVSMDQFTLS 329
Query: 223 SVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282
+++ + +Q HA++++ G ES+ LVD Y K + A VF+ +
Sbjct: 330 IMIRISTRLAKL-ELTKQAHASLIRSGFESEIVANTALVDFYSKWGRVDTARYVFDKL-P 387
Query: 283 KKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGI 317
+KNI SWNA++ GY +G +A + M A+ +
Sbjct: 388 RKNIISWNALMGGYANHGRGTDAVRLFERMIAAKV 422
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 102/200 (51%), Gaps = 2/200 (1%)
Query: 122 CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH 181
+++AC+ ++ K+V+G + G + ++ + K + DA +F ++
Sbjct: 128 ALVEACIRLKSIRCVKRVYGFIISNGFEPEKYMMNRILLMHVKCGMIIDARRLFDEMPER 187
Query: 182 NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQM 241
N + + I G++ + F FK M E ++TF+ +L+A G+ G+Q+
Sbjct: 188 NLFSYNSIISGFVNFGNYEEAFELFKLMWEELSDCETHTFAVMLRASAGLWSV-YVGKQL 246
Query: 242 HANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGL 301
H +K+G+ + +V CGL+DMY KC + DA FE + +K +A WN ++ GY +G
Sbjct: 247 HVCALKLGVVDNTFVSCGLIDMYSKCGDIEDARCAFESMPEKTTVA-WNNIVAGYALHGY 305
Query: 302 YVEATKFLYLMKASGIQIQE 321
EA LY M+ SG+ + +
Sbjct: 306 SEEALCLLYEMRDSGVSMDQ 325
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/245 (24%), Positives = 110/245 (44%), Gaps = 11/245 (4%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ CG ++ AR F+ MP + +W ++ GY +E + L EM R G
Sbjct: 265 LIDMYSKCGDIEDARCAFESMPEKTTVAWNNIVAGYALHGYSEEALCLLYEM--RDSGVS 322
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+ F I++ + +EL KQ H L + G I +L++FY K+ ++ A
Sbjct: 323 MDQFTLSIMI---RISTRLAKLELTKQAHASLIRSGFESEIVANTALVDFYSKWGRVDTA 379
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG-- 229
+VF +L R N + W A + G F+ M ++ N TF +VL AC
Sbjct: 380 RYVFDKLPRKNIISWNALMGGYANHGRGTDAVRLFERMIAAKVAPNHVTFLAVLSACAYS 439
Query: 230 GVDDDGNCGRQMHANIVKI-GLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
G+ + G ++ ++ ++ G++ ++++ G+ LL +A K +
Sbjct: 440 GLSEQ---GWEIFLSMSEVHGIKPRAMHYACMIELLGRDGLLDEAIAFIRRAPLKTTVNM 496
Query: 289 WNAML 293
W A+L
Sbjct: 497 WAALL 501
>gi|224098357|ref|XP_002311156.1| predicted protein [Populus trichocarpa]
gi|222850976|gb|EEE88523.1| predicted protein [Populus trichocarpa]
Length = 535
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 86/301 (28%), Positives = 143/301 (47%), Gaps = 10/301 (3%)
Query: 38 KRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECI 97
++ I + ++ M+ CG++DTA+QLF E+ RD +W+ +I +V QE +
Sbjct: 15 RQQGIDSDVAVATPIMTMYARCGEVDTAKQLFQEIKGRDLVAWSAIIAAFVQSGYPQEAL 74
Query: 98 TLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGS 157
+LF M L I++ L AC +++LGK +H K +IS+ +
Sbjct: 75 SLFRSMQNEG-----LQANKVILLSSLPACAEVSSLKLGKSMHCCAVKANVDLDISVGTA 129
Query: 158 LINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKN 217
L++ Y K A +F+++ + V W A I + G F ++ + N
Sbjct: 130 LVSMYAKCGFFALALTLFNRMPCKDVVTWNAMINGYAQIGEPFPALEMFHKLQLSELNPN 189
Query: 218 SYTFSSVLKACGGVDD--DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAER 275
S T +L A ++D G+C +H I+K G ES+ +V+ L+DMY KC L AE
Sbjct: 190 SGTMVGLLPAFALLNDLDQGSC---IHGKIIKCGFESECHVKTALIDMYAKCGSLSGAEF 246
Query: 276 VFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
+F +K+ SWN M+ GY+ +G ++A MK IQ I + A + +S
Sbjct: 247 LFHRTGCRKDEVSWNVMIAGYMHSGHAIDAFSAFCQMKLENIQPNIVTIVTVLPAVAHLS 306
Query: 336 A 336
A
Sbjct: 307 A 307
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 82/295 (27%), Positives = 137/295 (46%), Gaps = 17/295 (5%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
+ N+ + L+ M+ CG A LF+ MP +D +W MI GY + + +
Sbjct: 117 KANVDLDISVGTALVSMYAKCGFFALALTLFNRMPCKDVVTWNAMINGYAQIGEPFPALE 176
Query: 99 LFAEM----MKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISL 154
+F ++ + G M+ + PA+ ++ +++ G +HG + K G +
Sbjct: 177 MFHKLQLSELNPNSGTMVGLLPAFALL---------NDLDQGSCIHGKIIKCGFESECHV 227
Query: 155 TGSLINFYGKFRCLEDADFVFSQLK-RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRER 213
+LI+ Y K L A+F+F + R + V W I GH F+ F +M E
Sbjct: 228 KTALIDMYAKCGSLSGAEFLFHRTGCRKDEVSWNVMIAGYMHSGHAIDAFSAFCQMKLEN 287
Query: 214 IKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDA 273
I+ N T +VL A + G +HA ++++G +S V L+DMY KC L +
Sbjct: 288 IQPNIVTIVTVLPAVAHLSAL-RAGMTLHAYVIRMGFQSKTPVGNCLIDMYAKCGWLDHS 346
Query: 274 ERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQE-SLINDL 327
E++F + +K + SWN ML GY +G A + M+ S I++ S IN L
Sbjct: 347 EKIFHEMKNKDTV-SWNVMLAGYAVHGRGSCAIELFSRMQDSEIRLDSFSFINVL 400
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/245 (25%), Positives = 105/245 (42%), Gaps = 10/245 (4%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLR-DFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGH 110
L+ M+ CG L A LF R D SW VMI GY+ + + F +M
Sbjct: 231 LIDMYAKCGSLSGAEFLFHRTGCRKDEVSWNVMIAGYMHSGHAIDAFSAFCQMKLENIQP 290
Query: 111 MLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
++ IV VL A + G +H + ++G + LI+ Y K L+
Sbjct: 291 NIVT-----IVTVLPAVAHLSALRAGMTLHAYVIRMGFQSKTPVGNCLIDMYAKCGWLDH 345
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
++ +F ++K +TV W + G F M I+ +S++F +VL AC
Sbjct: 346 SEKIFHEMKNKDTVSWNVMLAGYAVHGRGSCAIELFSRMQDSEIRLDSFSFINVLSACRH 405
Query: 231 VDDDGNCGRQMHANIVKI-GLESD-EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
G GR++ ++ K LE D E+ C + D+ G+ L + + + + + +
Sbjct: 406 AGLIGE-GRKIFDSMSKQHQLEPDLEHYAC-MADLLGRAGLFNEVLDLIKSMPMEPDAGV 463
Query: 289 WNAML 293
W A+L
Sbjct: 464 WGALL 468
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 57/103 (55%), Gaps = 1/103 (0%)
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYI 297
G ++H + G++SD V ++ MY +C + A+++F+ I +++ +W+A++ ++
Sbjct: 7 GTEIHDFARQQGIDSDVAVATPIMTMYARCGEVDTAKQLFQEI-KGRDLVAWSAIIAAFV 65
Query: 298 RNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKIN 340
++G EA M+ G+Q + ++ AC+ +S+ K+
Sbjct: 66 QSGYPQEALSLFRSMQNEGLQANKVILLSSLPACAEVSSLKLG 108
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ CG LD + ++F EM +D SW VM+ GY I LF+ M +
Sbjct: 331 NCLIDMYAKCGWLDHSEKIFHEMKNKDTVSWNVMLAGYAVHGRGSCAIELFSRMQDSE-- 388
Query: 110 HMLLVFPAWIIVCVLKAC 127
+ ++ + VL AC
Sbjct: 389 ---IRLDSFSFINVLSAC 403
>gi|302805550|ref|XP_002984526.1| hypothetical protein SELMODRAFT_181046 [Selaginella moellendorffii]
gi|300147914|gb|EFJ14576.1| hypothetical protein SELMODRAFT_181046 [Selaginella moellendorffii]
Length = 792
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 87/287 (30%), Positives = 139/287 (48%), Gaps = 10/287 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ CG + +ARQ F+++ + W ++ YV Y+E + L+ M H
Sbjct: 284 LINMYARCGDVSSARQAFEKIQNKHVVCWTSLMTAYVQTCHYREALDLYGRM-----DHE 338
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+ V L AC ++ GK +H +F+ G +++ + +L+ Y K L+ A
Sbjct: 339 GVHADGVTYVTALGACASLGALKEGKAIHSRVFECGF-QSLVVHTALLTMYAKCGELDAA 397
Query: 172 DFVFSQLK-RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
VF++++ + N WTA I + GH + + +M E + N YTFS+VL AC
Sbjct: 398 RAVFNRVRQKRNVYCWTAMISAYAQAGHTQEALELYDQMVAEGTRPNEYTFSNVLAACSS 457
Query: 231 VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWN 290
D G ++H ++ L S+ VQ LV MY KC L A+ FE +K++ SWN
Sbjct: 458 -SGDLEAGMKIHGHVENSELASNVAVQNALVTMYAKCGSLELAKSAFE-ASGRKDLVSWN 515
Query: 291 AMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISAS 337
AM+ Y ++GL EA M + G+ E I AC +IS S
Sbjct: 516 AMIGAYAQHGLGREALDLYQTMTSQGVLPDEVTIASSLSAC-AISGS 561
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 81/291 (27%), Positives = 135/291 (46%), Gaps = 11/291 (3%)
Query: 45 TLLFLNRLLLMHVSCGQLDTARQLFDEM-PLRDFNSWAVMIVGYVDVADYQECITLFAEM 103
+L+ LL M+ CG+LD AR +F+ + R+ W MI Y QE + L+ +M
Sbjct: 377 SLVVHTALLTMYAKCGELDAARAVFNRVRQKRNVYCWTAMISAYAQAGHTQEALELYDQM 436
Query: 104 MKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYG 163
+ F VL AC + ++E G ++HG + + N+++ +L+ Y
Sbjct: 437 VAEGTRPNEYTFSN-----VLAACSSSGDLEAGMKIHGHVENSELASNVAVQNALVTMYA 491
Query: 164 KFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSS 223
K LE A F R + V W A I + G + + ++ M + + + T +S
Sbjct: 492 KCGSLELAKSAFEASGRKDLVSWNAMIGAYAQHGLGREALDLYQTMTSQGVLPDEVTIAS 551
Query: 224 VLKACGGVDDDGNCGRQMHANIVK-IGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282
L AC + GR++H+ ++K S VQ LV+MYG+C L A +FE +
Sbjct: 552 SLSACA-ISGSLQLGREIHSRVLKNQSFRSSLMVQTALVNMYGRCGRLETARSMFE-DMG 609
Query: 283 KKNIASWNAMLVGYIRNGLYVEATKFLYL-MKASGIQIQESLINDLRIACS 332
++++ SW AM Y + G + + LYL M GI+ E + + CS
Sbjct: 610 QRDVLSWTAMTSAYAQQG-HADQVLDLYLEMVLHGIRPNEITFTSILVGCS 659
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 76/293 (25%), Positives = 132/293 (45%), Gaps = 13/293 (4%)
Query: 42 IKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFA 101
I+ L N L+ M+ CG ++ AR++FD + RD SW MI Y + E + L+
Sbjct: 177 IRDNLSLQNALVNMYGKCGSVEEARKVFDGIKNRDAVSWTSMISSYANNGFCDEALDLYQ 236
Query: 102 EMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGS-LIN 160
+M + F + ++ C + GK +H + + S+ GS LIN
Sbjct: 237 QMDADGIQPDSITFTSALLACT--------KLVDGKAIHARI--VSSNMESDFVGSALIN 286
Query: 161 FYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYT 220
Y + + A F +++ + V WT+ + + H+ + + + M E + + T
Sbjct: 287 MYARCGDVSSARQAFEKIQNKHVVCWTSLMTAYVQTCHYREALDLYGRMDHEGVHADGVT 346
Query: 221 FSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELI 280
+ + L AC + G+ +H+ + + G +S V L+ MY KC L A VF +
Sbjct: 347 YVTALGACASLGALKE-GKAIHSRVFECGFQS-LVVHTALLTMYAKCGELDAARAVFNRV 404
Query: 281 VDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSS 333
K+N+ W AM+ Y + G EA + M A G + E +++ ACSS
Sbjct: 405 RQKRNVYCWTAMISAYAQAGHTQEALELYDQMVAEGTRPNEYTFSNVLAACSS 457
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 76/295 (25%), Positives = 137/295 (46%), Gaps = 15/295 (5%)
Query: 48 FLNRLLL-MHVSCGQLDTARQLFDEMP-LRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
FL LL+ M+ +CG++ AR F ++ + M+ Y + + L+ M +
Sbjct: 78 FLGNLLIQMYGNCGEIHLARAAFQNFASIKAVACYNQMLSAYGKNGLWNRALELYHRMCE 137
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGS--SRNISLTGSLINFYG 163
+ + VL +C ++ +++H + + N+SL +L+N YG
Sbjct: 138 EGPEPDKITY-----FIVLGSCSAVGSLREAREIHASIIEAPQIIRDNLSLQNALVNMYG 192
Query: 164 KFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSS 223
K +E+A VF +K + V WT+ I + G + + +++M + I+ +S TF+S
Sbjct: 193 KCGSVEEARKVFDGIKNRDAVSWTSMISSYANNGFCDEALDLYQQMDADGIQPDSITFTS 252
Query: 224 VLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
L AC + D G+ +HA IV +ESD +V L++MY +C + A + FE I
Sbjct: 253 ALLACTKLVD----GKAIHARIVSSNMESD-FVGSALINMYARCGDVSSARQAFEKI-QN 306
Query: 284 KNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASK 338
K++ W +++ Y++ Y EA M G+ AC+S+ A K
Sbjct: 307 KHVVCWTSLMTAYVQTCHYREALDLYGRMDHEGVHADGVTYVTALGACASLGALK 361
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/288 (26%), Positives = 137/288 (47%), Gaps = 19/288 (6%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
++ ++ C+ D ++ H+ + + + N L+ M+ CG L+ A+ F+
Sbjct: 448 FSNVLAACSSSGDLEAGMKIHGHV-ENSELASNVAVQNALVTMYAKCGSLELAKSAFEAS 506
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI-IVCVLKACVCTM 131
+D SW MI Y +E + L+ M + V P + I L AC +
Sbjct: 507 GRKDLVSWNAMIGAYAQHGLGREALDLYQTMTSQG------VLPDEVTIASSLSACAISG 560
Query: 132 NMELGKQVHGLLFKLGSSRN-ISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKI 190
+++LG+++H + K S R+ + + +L+N YG+ LE A +F + + + + WTA
Sbjct: 561 SLQLGREIHSRVLKNQSFRSSLMVQTALVNMYGRCGRLETARSMFEDMGQRDVLSWTAMT 620
Query: 191 VNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--GGVDDDG-NCGRQMHA--NI 245
++GH QV + + EM I+ N TF+S+L C G+ G C +M + +
Sbjct: 621 SAYAQQGHADQVLDLYLEMVLHGIRPNEITFTSILVGCSHAGLLARGVECFLEMQSEHEV 680
Query: 246 VKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
V I E+ C +VD+ G+ LRDAE + E + + + +W +L
Sbjct: 681 VPI----REHFLC-MVDLLGRSGRLRDAEALVESMPYQPDSVAWLTVL 723
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 95/215 (44%), Gaps = 5/215 (2%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
+L+ C ++ GK VH L + G RN L LI YG + A F
Sbjct: 48 LLQQCGRLGSLAEGKLVHRHLLRTGHGRNQFLGNLLIQMYGNCGEIHLARAAFQNFASIK 107
Query: 183 TVV-WTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQM 241
V + + + G +++ + M E + + T+ VL +C V R++
Sbjct: 108 AVACYNQMLSAYGKNGLWNRALELYHRMCEEGPEPDKITYFIVLGSCSAVGSLRE-AREI 166
Query: 242 HANIVKIG--LESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRN 299
HA+I++ + + +Q LV+MYGKC + +A +VF+ I ++ + SW +M+ Y N
Sbjct: 167 HASIIEAPQIIRDNLSLQNALVNMYGKCGSVEEARKVFDGIKNRDAV-SWTSMISSYANN 225
Query: 300 GLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
G EA M A GIQ +AC+ +
Sbjct: 226 GFCDEALDLYQQMDADGIQPDSITFTSALLACTKL 260
Score = 44.3 bits (103), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 221 FSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELI 280
+ +L+ CG + G+ +H ++++ G ++++ L+ MYG C + A F+
Sbjct: 45 YDELLQQCGRLGSLAE-GKLVHRHLLRTGHGRNQFLGNLLIQMYGNCGEIHLARAAFQNF 103
Query: 281 VDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
K +A +N ML Y +NGL+ A + + M G +
Sbjct: 104 ASIKAVACYNQMLSAYGKNGLWNRALELYHRMCEEGPE 141
>gi|19697432|gb|AAL93067.1|AC093180_14 hypothetical protein [Oryza sativa Japonica Group]
Length = 1012
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 81/283 (28%), Positives = 139/283 (49%), Gaps = 9/283 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL M+ CG + AR F+ +P D + MI Y ++ LF +M+
Sbjct: 304 LLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSS---- 359
Query: 112 LLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
V P + + VL+AC + ++ GKQ+H K+G ++ + +L++FY K ++
Sbjct: 360 --VLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDS 417
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
+ +FS L+ N V W +V + G + + F EM ++ T+SSVL+AC
Sbjct: 418 SLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACAS 477
Query: 231 VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWN 290
+ G Q+H +I K +D + L+D Y KC +RDA +VF+ +++ ++I SWN
Sbjct: 478 TASIRHAG-QIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLME-RDIISWN 535
Query: 291 AMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSS 333
A++ GY +G +A + M S ++ + L CSS
Sbjct: 536 AIISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCSS 578
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 95/332 (28%), Positives = 165/332 (49%), Gaps = 20/332 (6%)
Query: 11 DMYTCL--IKECTFQKDSAGAFELLNHIRKRVNIKPTLLF-LNRLLLMHVSCGQLDTARQ 67
D + C ++ C + D+ G + H+ +R + LF N LL M+ G L +AR+
Sbjct: 58 DSFACARQLQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARR 117
Query: 68 LFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKAC 127
LFD MP R+ S+ ++ + D++ LF + R +GH + F ++ +LK
Sbjct: 118 LFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRL--RWEGHEVNQF---VLTTMLKLA 172
Query: 128 VCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWT 187
+ L VH +KLG N + LI+ Y + DA+ VF+ + R + VVWT
Sbjct: 173 IAMDAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWT 232
Query: 188 AKIV----NNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHA 243
A + N+C E F +VF+ + G K N + +SVLKA + G+ +H
Sbjct: 233 AMVSCYSENDCPENAF-RVFSKMRVSG---CKPNPFALTSVLKAAVCL-PSVVLGKGIHG 287
Query: 244 NIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYV 303
+K +++ +V L+DMY KC ++DA FE+I ++ + M+ Y ++
Sbjct: 288 CAIKTLNDTEPHVGGALLDMYAKCGDIKDARLAFEMI-PYDDVILLSFMISRYAQSNQNE 346
Query: 304 EATK-FLYLMKASGIQIQESLINDLRIACSSI 334
+A + FL LM++S + + SL + L+ AC+++
Sbjct: 347 QAFELFLRLMRSSVLPNEYSLSSVLQ-ACTNM 377
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 75/278 (26%), Positives = 135/278 (48%), Gaps = 7/278 (2%)
Query: 59 CGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAW 118
C + A +F+ + +D W M+ Y + + +F++M R G F
Sbjct: 210 CSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRVFSKM--RVSGCKPNPFA-- 265
Query: 119 IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL 178
+ VLKA VC ++ LGK +HG K + + G+L++ Y K ++DA F +
Sbjct: 266 -LTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARLAFEMI 324
Query: 179 KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCG 238
+ ++ + I + Q F F + R + N Y+ SSVL+AC + + G
Sbjct: 325 PYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNM-VQLDFG 383
Query: 239 RQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIR 298
+Q+H + +KIG ESD +V L+D Y KC + + ++F + D + SWN ++VG+ +
Sbjct: 384 KQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEV-SWNTIVVGFSQ 442
Query: 299 NGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+GL EA M+A+ + + + + AC+S ++
Sbjct: 443 SGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTAS 480
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/266 (23%), Positives = 114/266 (42%), Gaps = 12/266 (4%)
Query: 31 ELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFN--SWAVMIVGYV 88
++ NH K + + L N L+ + C +D++ ++F LRD N SW ++VG+
Sbjct: 385 QIHNHAIK-IGHESDLFVGNALMDFYAKCNDMDSSLKIFSS--LRDANEVSWNTIVVGFS 441
Query: 89 DVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGS 148
+E +++F EM + + + + VL+AC T ++ Q+H + K
Sbjct: 442 QSGLGEEALSVFCEMQAAQMPCTQVTYSS-----VLRACASTASIRHAGQIHCSIEKSTF 496
Query: 149 SRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKE 208
+ + + SLI+ Y K + DA VF L + + W A I G F
Sbjct: 497 NNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFDR 556
Query: 209 MGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLE-SDEYVQCGLVDMYGKC 267
M + ++ N TF ++L C + + + G++ S E+ C +V + G+
Sbjct: 557 MNKSNVESNDITFVALLSVCSSTGLVNHGLSLFDSMRIDHGIKPSMEHYTC-IVRLLGRA 615
Query: 268 RLLRDAERVFELIVDKKNIASWNAML 293
L DA + I + W A+L
Sbjct: 616 GRLNDALQFIGDIPSAPSAMVWRALL 641
Score = 38.5 bits (88), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 1/117 (0%)
Query: 6 LPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTA 65
+P T Y+ +++ C A ++ I K T++ N L+ + CG + A
Sbjct: 461 MPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIG-NSLIDTYAKCGYIRDA 519
Query: 66 RQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVC 122
++F + RD SW +I GY + + LF M K + F A + VC
Sbjct: 520 LKVFQHLMERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVC 576
>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
[Vitis vinifera]
gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
Length = 742
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 87/295 (29%), Positives = 144/295 (48%), Gaps = 9/295 (3%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R+ + + N L+ ++ CG+++ AR +F+ + R+ SW MI GY E +
Sbjct: 197 RLGFESDVFVQNGLVALYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYGQNGLPMEALR 256
Query: 99 LFAEMMKRKKGHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGS 157
+F +M +R V P WI +V VL+A ++E GK +HG + K+G L S
Sbjct: 257 IFGQMRQRN------VKPDWIALVSVLRAYTDVEDLEQGKSIHGCVVKMGLEFEPDLLIS 310
Query: 158 LINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKN 217
L Y K + A F Q++ N ++W A I + G+ ++ F+EM + I+ +
Sbjct: 311 LTAMYAKCGQVMVARSFFDQMEIPNVMMWNAMISGYAKNGYTNEAVGLFQEMISKNIRTD 370
Query: 218 SYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVF 277
S T S + AC V + + M I K +D +V L+DM+ KC + A VF
Sbjct: 371 SITVRSAILACAQVGSL-DLAKWMGDYINKTEYRNDVFVNTALIDMFAKCGSVDLAREVF 429
Query: 278 ELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+ +D K++ W+AM+VGY +G +A Y MK +G+ + L AC+
Sbjct: 430 DRTLD-KDVVVWSAMIVGYGLHGRGQDAIDLFYAMKQAGVCPNDVTFVGLLTACN 483
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 81/277 (29%), Positives = 130/277 (46%), Gaps = 7/277 (2%)
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI 119
G++ AR++FDE P W +I GY + + I +++ M P
Sbjct: 117 GEIGYARKVFDEFPEPSVFLWNAIIRGYSSHNFFGDAIEMYSRMQASGVNPDGFTLP--- 173
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
CVLKAC +E+GK+VHG +F+LG ++ + L+ Y K +E A VF L
Sbjct: 174 --CVLKACSGVPVLEVGKRVHGQIFRLGFESDVFVQNGLVALYAKCGRVEQARIVFEGLD 231
Query: 180 RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGR 239
N V WT+ I + G + F +M + +K + SVL+A V+D G+
Sbjct: 232 DRNIVSWTSMISGYGQNGLPMEALRIFGQMRQRNVKPDWIALVSVLRAYTDVEDLEQ-GK 290
Query: 240 QMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRN 299
+H +VK+GLE + + L MY KC + A F+ + + N+ WNAM+ GY +N
Sbjct: 291 SIHGCVVKMGLEFEPDLLISLTAMYAKCGQVMVARSFFDQM-EIPNVMMWNAMISGYAKN 349
Query: 300 GLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
G EA M + I+ + +AC+ + +
Sbjct: 350 GYTNEAVGLFQEMISKNIRTDSITVRSAILACAQVGS 386
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/261 (23%), Positives = 115/261 (44%), Gaps = 14/261 (5%)
Query: 36 IRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQE 95
++ + +P LL L M+ CGQ+ AR FD+M + + W MI GY E
Sbjct: 297 VKMGLEFEPDLLI--SLTAMYAKCGQVMVARSFFDQMEIPNVMMWNAMISGYAKNGYTNE 354
Query: 96 CITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLT 155
+ LF EM+ + + + + + AC +++L K + + K ++ +
Sbjct: 355 AVGLFQEMISKN-----IRTDSITVRSAILACAQVGSLDLAKWMGDYINKTEYRNDVFVN 409
Query: 156 GSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIK 215
+LI+ + K ++ A VF + + VVW+A IV G + F M + +
Sbjct: 410 TALIDMFAKCGSVDLAREVFDRTLDKDVVVWSAMIVGYGLHGRGQDAIDLFYAMKQAGVC 469
Query: 216 KNSYTFSSVLKAC---GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRD 272
N TF +L AC G V++ G ++ ++ G+E+ +VD+ G+ L +
Sbjct: 470 PNDVTFVGLLTACNHSGLVEE----GWELFHSMKYYGIEARHQHYACVVDLLGRSGHLNE 525
Query: 273 AERVFELIVDKKNIASWNAML 293
A + + ++ W A+L
Sbjct: 526 AYDFITTMPIEPGVSVWGALL 546
>gi|224112156|ref|XP_002316102.1| predicted protein [Populus trichocarpa]
gi|222865142|gb|EEF02273.1| predicted protein [Populus trichocarpa]
Length = 665
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 88/298 (29%), Positives = 145/298 (48%), Gaps = 10/298 (3%)
Query: 44 PTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEM 103
P L+ M+ CG+++ +R +FDE R+ SW+ MI GYV Q+ + LF M
Sbjct: 135 PDSFVFTGLVDMYAKCGEIECSRSVFDENLDRNVFSWSSMIAGYVQNNLAQDGLVLFNRM 194
Query: 104 MKRKKGHMLLVFPAWIIVCVL-KACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFY 162
+ L+ I + +L AC + GK +HG L K G L +L++ Y
Sbjct: 195 REE------LIEANQITLGILVHACKKLGALHQGKWLHGYLIKCGIELGSYLVTALLDLY 248
Query: 163 GKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFS 222
K + DA VF +L + V WTA IV + G + F + + + N T +
Sbjct: 249 AKCGVVRDARSVFDELHGIDIVSWTAMIVGYTQNGCPEEALKLFLQKEQVAVLPNDVTIA 308
Query: 223 SVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282
SV +C + + N GR +H +K+G D V LVD Y KC++ RDA VFE I D
Sbjct: 309 SVFSSCSQLLNL-NLGRSIHGLSIKLG-SRDPIVTNSLVDFYAKCQMNRDARYVFETISD 366
Query: 283 KKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKIN 340
+++ +WN+++ + +NG EA + + M+ + + + AC+S++A ++
Sbjct: 367 -RDVVAWNSIISAFSQNGSAYEALELFHQMRMGSVLPDAVTLVSVLSACASLNALQVG 423
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 87/283 (30%), Positives = 137/283 (48%), Gaps = 11/283 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL ++ CG + AR +FDE+ D SW MIVGY +E + LF + +
Sbjct: 244 LLDLYAKCGVVRDARSVFDELHGIDIVSWTAMIVGYTQNGCPEEALKLFLQKEQ------ 297
Query: 112 LLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
+ V P + I V +C +N+ LG+ +HGL KLGS R+ +T SL++FY K + D
Sbjct: 298 VAVLPNDVTIASVFSSCSQLLNLNLGRSIHGLSIKLGS-RDPIVTNSLVDFYAKCQMNRD 356
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
A +VF + + V W + I + G ++ F +M + ++ T SVL AC
Sbjct: 357 ARYVFETISDRDVVAWNSIISAFSQNGSAYEALELFHQMRMGSVLPDAVTLVSVLSACAS 416
Query: 231 VDDDGNCGRQMHANIVKIGL-ESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
++ G HA VK GL S+ YV L+ Y KC A +F+ + D+K+ +W
Sbjct: 417 LNAL-QVGSSFHAYAVKRGLLSSNVYVGTALLTFYAKCGDAESARVIFDGM-DQKSTVTW 474
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+AM+ GY G + M + ++ E + + ACS
Sbjct: 475 SAMISGYGIQGNGRGSLSIFGDMLKAELKPNEEIFTSILSACS 517
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 91/293 (31%), Positives = 146/293 (49%), Gaps = 19/293 (6%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+L+ ++ S G+LD AR +FD +P DF SW V+I Y +++++ + + M K
Sbjct: 41 TKLVSLYGSFGRLDLARLVFDTIPHPDFLSWKVIIRWYFLNSEFRDIVGFYNRMRVCLKE 100
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+VF VLKAC + N + G++VH + K G+ + TG L++ Y K +E
Sbjct: 101 CDNVVFSH-----VLKACSESRNFDEGRKVHCQIVKFGNPDSFVFTG-LVDMYAKCGEIE 154
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC- 228
+ VF + N W++ I + F M E I+ N T ++ AC
Sbjct: 155 CSRSVFDENLDRNVFSWSSMIAGYVQNNLAQDGLVLFNRMREELIEANQITLGILVHACK 214
Query: 229 --GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
G + G+ +H ++K G+E Y+ L+D+Y KC ++RDA VF+ + +I
Sbjct: 215 KLGALHQ----GKWLHGYLIKCGIELGSYLVTALLDLYAKCGVVRDARSVFDEL-HGIDI 269
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKI 339
SW AM+VGY +NG EA K L+L K + L ND+ IA S S++
Sbjct: 270 VSWTAMIVGYTQNGCPEEALK-LFLQK----EQVAVLPNDVTIASVFSSCSQL 317
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 97/199 (48%), Gaps = 3/199 (1%)
Query: 138 QVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREG 197
++H L G +R++S + L++ YG F L+ A VF + + + W I
Sbjct: 23 EMHAYLVVQGLTRDLSCSTKLVSLYGSFGRLDLARLVFDTIPHPDFLSWKVIIRWYFLNS 82
Query: 198 HFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQ 257
F + + M + ++ FS VLKAC + + GR++H IVK G D +V
Sbjct: 83 EFRDIVGFYNRMRVCLKECDNVVFSHVLKACSE-SRNFDEGRKVHCQIVKFG-NPDSFVF 140
Query: 258 CGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGI 317
GLVDMY KC + + VF+ +D +N+ SW++M+ GY++N L + M+ I
Sbjct: 141 TGLVDMYAKCGEIECSRSVFDENLD-RNVFSWSSMIAGYVQNNLAQDGLVLFNRMREELI 199
Query: 318 QIQESLINDLRIACSSISA 336
+ + + L AC + A
Sbjct: 200 EANQITLGILVHACKKLGA 218
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 63/249 (25%), Positives = 108/249 (43%), Gaps = 10/249 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ + C AR +F+ + RD +W +I + E + LF +M
Sbjct: 342 NSLVDFYAKCQMNRDARYVFETISDRDVVAWNSIISAFSQNGSAYEALELFHQM------ 395
Query: 110 HMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGS-SRNISLTGSLINFYGKFRC 167
M V P A +V VL AC +++G H K G S N+ + +L+ FY K
Sbjct: 396 RMGSVLPDAVTLVSVLSACASLNALQVGSSFHAYAVKRGLLSSNVYVGTALLTFYAKCGD 455
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
E A +F + + +TV W+A I +G+ + F +M + +K N F+S+L A
Sbjct: 456 AESARVIFDGMDQKSTVTWSAMISGYGIQGNGRGSLSIFGDMLKAELKPNEEIFTSILSA 515
Query: 228 CGGVDDDGNCGRQMHANIVKIGL-ESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
C G R L S ++ C +VD+ + L++A + + + ++
Sbjct: 516 CSHTGMIGEGWRLFTMICQDYNLVPSTKHYTC-MVDLLARAGRLKEALDFIQKMPVQPDV 574
Query: 287 ASWNAMLVG 295
+ + A L G
Sbjct: 575 SLFGAFLHG 583
>gi|242082165|ref|XP_002445851.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
gi|241942201|gb|EES15346.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
Length = 1084
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 91/287 (31%), Positives = 136/287 (47%), Gaps = 19/287 (6%)
Query: 51 RLLLMHVSCGQLDTARQLFDEMPLR--DFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
RL+L ++ CG L AR +FDEMP R D W ++ Y D+QE ++LF +M
Sbjct: 135 RLVLAYLKCGDLGGARMVFDEMPPRVADVRVWTSLMSAYAKAGDFQEGVSLFRQM----- 189
Query: 109 GHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
V P A + CVLK ++ G+ +HGLL KLG ++ +LI Y + C
Sbjct: 190 -QCCGVSPDAHAVSCVLKCIASLGSITEGEVIHGLLEKLGLGEACAVANALIALYSRCGC 248
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
+EDA VF + + + W + I G + + F +M E + +S T SVL A
Sbjct: 249 MEDAMQVFDSMHARDAISWNSTISGYFSNGWHDRAVDLFSKMWSEGTEISSVTVLSVLPA 308
Query: 228 CGGVDDDGNCGRQMHANIVKIGLESD-EYVQCG--------LVDMYGKCRLLRDAERVFE 278
C + + G+ +H +K GL D E VQ G LV MY KC + A RVF+
Sbjct: 309 CAELGFE-LVGKVVHGYSMKSGLLWDLESVQSGIDEALGSKLVFMYVKCGDMGSARRVFD 367
Query: 279 LIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLIN 325
+ K N+ WN ++ GY + + E+ M GI E ++
Sbjct: 368 AMPSKGNVHVWNLIMGGYAKAAEFEESLLLFEQMHELGITPDEHALS 414
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 132/271 (48%), Gaps = 10/271 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLR-DFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
++L+ M+V CG + +AR++FD MP + + + W +++ GY A+++E + LF +M
Sbjct: 347 SKLVFMYVKCGDMGSARRVFDAMPSKGNVHVWNLIMGGYAKAAEFEESLLLFEQM----- 401
Query: 109 GHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
H L + P + C+LK C G HG L KLG ++ +LI+FY K
Sbjct: 402 -HELGITPDEHALSCLLKCITCLSCARDGLVAHGYLVKLGFGTQCAVCNALISFYAKSNM 460
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
+++A VF ++ +T+ W + I G + F M + + +S T SVL A
Sbjct: 461 IDNAVLVFDRMPHQDTISWNSVISGCTSNGLNSEAIELFVRMWMQGHELDSTTLLSVLPA 520
Query: 228 CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
C GR +H VK GL + + L+DMY C ++F + +KN+
Sbjct: 521 C-ARSHYWFVGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWHSTNQIFRNMA-QKNVV 578
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
SW AM+ Y R GL+ + L M GI+
Sbjct: 579 SWTAMITSYTRAGLFDKVAGLLQEMVLDGIK 609
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/256 (30%), Positives = 122/256 (47%), Gaps = 7/256 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ + +D A +FD MP +D SW +I G E I LF M +G
Sbjct: 449 NALISFYAKSNMIDNAVLVFDRMPHQDTISWNSVISGCTSNGLNSEAIELFVRMWM--QG 506
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
H L + ++ VL AC + +G+ VHG K G SL +L++ Y
Sbjct: 507 HEL---DSTTLLSVLPACARSHYWFVGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWH 563
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
+ +F + + N V WTA I + R G F +V +EM + IK + + +SVL
Sbjct: 564 STNQIFRNMAQKNVVSWTAMITSYTRAGLFDKVAGLLQEMVLDGIKPDVFAVTSVLHGFA 623
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
G D+ G+ +H ++ G+E V L++MY CR + +A VF+ + + K+I SW
Sbjct: 624 G-DESLKQGKSVHGYAIRNGMEKLLPVANALMEMYVNCRNMEEARLVFDHVTN-KDIISW 681
Query: 290 NAMLVGYIRNGLYVEA 305
N ++ GY RN E+
Sbjct: 682 NTLIGGYSRNNFANES 697
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/282 (27%), Positives = 127/282 (45%), Gaps = 8/282 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N LL M+ +C + Q+F M ++ SW MI Y + + L EM+ G
Sbjct: 550 NALLDMYSNCSDWHSTNQIFRNMAQKNVVSWTAMITSYTRAGLFDKVAGLLQEMVL--DG 607
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
VF + VL +++ GK VHG + G + + + +L+ Y R +E
Sbjct: 608 IKPDVFA---VTSVLHGFAGDESLKQGKSVHGYAIRNGMEKLLPVANALMEMYVNCRNME 664
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
+A VF + + + W I R ++ F+ F +M + K N+ T + +L A
Sbjct: 665 EARLVFDHVTNKDIISWNTLIGGYSRNNFANESFSLFSDM-LLQFKPNTVTMTCILPAVA 723
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ GR++HA ++ G D Y LVDMY KC L A +F+ + KKN+ SW
Sbjct: 724 SISSLER-GREIHAYALRRGFLEDSYTSNALVDMYVKCGALLVARVLFDRLT-KKNLISW 781
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
M+ GY +G +A M+ SG++ + + + AC
Sbjct: 782 TIMIAGYGMHGCGKDAVALFEQMRGSGVEPDTASFSAILYAC 823
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 85/343 (24%), Positives = 147/343 (42%), Gaps = 26/343 (7%)
Query: 5 CLPITTDMY--TCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQL 62
C ++ D + +C++K C S E+++ + +++ + N L+ ++ CG +
Sbjct: 191 CCGVSPDAHAVSCVLK-CIASLGSITEGEVIHGLLEKLGLGEACAVANALIALYSRCGCM 249
Query: 63 DTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVC 122
+ A Q+FD M RD SW I GY + + LF++M + ++
Sbjct: 250 EDAMQVFDSMHARDAISWNSTISGYFSNGWHDRAVDLFSKMWSEGT-----EISSVTVLS 304
Query: 123 VLKACVCTMNMEL-GKQVHGLLFKLG---------SSRNISLTGSLINFYGKFRCLEDAD 172
VL AC + EL GK VHG K G S + +L L+ Y K + A
Sbjct: 305 VLPACA-ELGFELVGKVVHGYSMKSGLLWDLESVQSGIDEALGSKLVFMYVKCGDMGSAR 363
Query: 173 FVFSQLK-RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK--ACG 229
VF + + N VW + + F + F++M I + + S +LK C
Sbjct: 364 RVFDAMPSKGNVHVWNLIMGGYAKAAEFEESLLLFEQMHELGITPDEHALSCLLKCITCL 423
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
DG H +VK+G + V L+ Y K ++ +A VF+ + + I SW
Sbjct: 424 SCARDGLVA---HGYLVKLGFGTQCAVCNALISFYAKSNMIDNAVLVFDRMPHQDTI-SW 479
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
N+++ G NGL EA + M G ++ + + + AC+
Sbjct: 480 NSVISGCTSNGLNSEAIELFVRMWMQGHELDSTTLLSVLPACA 522
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 123/263 (46%), Gaps = 18/263 (6%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R ++ L N L+ M+V+C ++ AR +FD + +D SW +I GY E +
Sbjct: 640 RNGMEKLLPVANALMEMYVNCRNMEEARLVFDHVTNKDIISWNTLIGGYSRNNFANESFS 699
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
LF++M+ + K + + + C+L A ++E G+++H + G + + +L
Sbjct: 700 LFSDMLLQFKPNTV------TMTCILPAVASISSLERGREIHAYALRRGFLEDSYTSNAL 753
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
++ Y K L A +F +L + N + WT I G F++M ++ ++
Sbjct: 754 VDMYVKCGALLVARVLFDRLTKKNLISWTIMIAGYGMHGCGKDAVALFEQMRGSGVEPDT 813
Query: 219 YTFSSVLKAC--GGVDDDG----NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRD 272
+FS++L AC G+ +G N R+ + K+ ++ C +VD+ L++
Sbjct: 814 ASFSAILYACCHSGLTAEGWKFFNAMRKEYKIEPKL-----KHYTC-IVDLLSHTGNLKE 867
Query: 273 AERVFELIVDKKNIASWNAMLVG 295
A E + + + + W ++L G
Sbjct: 868 AFEFIESMPIEPDSSIWVSLLHG 890
>gi|255559863|ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539787|gb|EEF41367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 835
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 84/333 (25%), Positives = 163/333 (48%), Gaps = 11/333 (3%)
Query: 6 LPITTDMYT--CLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLD 63
L ++ D YT L+K C +D E+ + + + + +N L+ ++ C ++
Sbjct: 52 LGVSFDSYTFPVLLKACGIVEDLFCGAEI-HGLAIKYGCDSFVFVVNSLVALYAKCNDIN 110
Query: 64 TARQLFDEMPLR-DFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVC 122
AR+LFD M +R D SW +I Y E + LF+EM+K +V +
Sbjct: 111 GARKLFDRMYVRNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAG-----VVTNTYTFAA 165
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
L+AC + ++LG Q+H + K G ++ + +L+ Y +F + +A +F L+ +
Sbjct: 166 ALQACEDSSFIKLGMQIHAAILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKD 225
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
V W + + + G + + F ++ +K + + S++ A G + N G+++H
Sbjct: 226 IVTWNSMLTGFIQNGLYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLN-GKEIH 284
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
A +K G +S+ V L+DMY KC + R F+L+ K++ SW GY +N Y
Sbjct: 285 AYAIKNGFDSNILVGNTLIDMYAKCCCMSYGGRAFDLMA-HKDLISWTTAAAGYAQNKCY 343
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
++A + L ++ G+ + ++I + +AC ++
Sbjct: 344 LQALELLRQLQMEGMDVDATMIGSILLACRGLN 376
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 83/279 (29%), Positives = 142/279 (50%), Gaps = 12/279 (4%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+ CG + A +FD+M R +W M+ GYV + + ++ EM H+ +
Sbjct: 1 MYGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMR-----HLGVS 55
Query: 115 FPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFV 174
F ++ +LKAC ++ G ++HGL K G + + SL+ Y K + A +
Sbjct: 56 FDSYTFPVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKL 115
Query: 175 FSQLK-RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDD 233
F ++ R++ V W + I G + F EM + + N+YTF++ L+AC +D
Sbjct: 116 FDRMYVRNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQAC---ED 172
Query: 234 DG--NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
G Q+HA I+K G D YV LV MY + + +A +F + + K+I +WN+
Sbjct: 173 SSFIKLGMQIHAAILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNL-EGKDIVTWNS 231
Query: 292 MLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIA 330
ML G+I+NGLY EA +F Y ++ + ++ + I + +A
Sbjct: 232 MLTGFIQNGLYSEALEFFYDLQNADLKPDQVSIISIIVA 270
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/285 (24%), Positives = 138/285 (48%), Gaps = 11/285 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+V G++ A +F + +D +W M+ G++ Y E + F ++
Sbjct: 199 NALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNGLYSEALEFFYDLQNAD-- 256
Query: 110 HMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+ P + I+ ++ A + GK++H K G NI + +LI+ Y K C+
Sbjct: 257 ----LKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGFDSNILVGNTLIDMYAKCCCM 312
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
F + + + WT + + Q +++ E + ++ S+L AC
Sbjct: 313 SYGGRAFDLMAHKDLISWTTAAAGYAQNKCYLQALELLRQLQMEGMDVDATMIGSILLAC 372
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
G++ G +++H ++ GL SD +Q ++D+YG+C ++ A R+FE I + K++ S
Sbjct: 373 RGLNCLGKI-KEIHGYTIRGGL-SDPVLQNTIIDVYGECGIIDYAVRIFESI-ECKDVVS 429
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQE-SLINDLRIACS 332
W +M+ Y+ NGL +A + MK +G++ +L++ L CS
Sbjct: 430 WTSMISCYVHNGLANKALEVFSSMKETGLEPDYVTLVSILSAVCS 474
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/248 (25%), Positives = 126/248 (50%), Gaps = 13/248 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N ++ ++ CG +D A ++F+ + +D SW MI YV + + +F+ M ++ G
Sbjct: 400 NTIIDVYGECGIIDYAVRIFESIECKDVVSWTSMISCYVHNGLANKALEVFSSM--KETG 457
Query: 110 HMLLVFPAWIIVCVLKACVCTMN-MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+ P ++ + + + VC+++ ++ GK++HG + + G S++ +L++ Y + +
Sbjct: 458 ----LEPDYVTLVSILSAVCSLSTLKKGKEIHGFIIRKGFILEGSISNTLVDMYARCGSV 513
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
EDA +F+ K N ++WTA I G+ F M E+I + TF ++L AC
Sbjct: 514 EDAYKIFTCTKNRNLILWTAMISAYGMHGYGEAAVELFMRMKDEKIIPDHITFLALLYAC 573
Query: 229 --GGVDDDGNCGRQMHANIVKIGLES-DEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
G+ ++G ++ + LE E+ C LVD+ G+ L +A ++ + + ++
Sbjct: 574 SHSGLVNEGKSFLEIMK--CEYQLEPWPEHYTC-LVDLLGRRNCLEEAYQIVKSMQNEPT 630
Query: 286 IASWNAML 293
W A+L
Sbjct: 631 PEVWCALL 638
>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Vitis vinifera]
Length = 824
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 91/283 (32%), Positives = 140/283 (49%), Gaps = 8/283 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N LL M+ G L++A Q+F+ M R SW MI GY + LF EM K+G
Sbjct: 290 NCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEM--EKEG 347
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+F I +L AC CT +E GK VH + + ++ ++ +L++ Y K +
Sbjct: 348 ISPDIF---TITTILHACACTGLLENGKDVHNYIKENKMQSDLFVSNALMDMYAKCGSMG 404
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
DA VFS+++ + V W I + ++ N F EM + K NS T + +L AC
Sbjct: 405 DAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEM-QYNSKPNSITMACILPACA 463
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ G+++H +I++ G D +V LVDMY KC L A +F++I +K ++ SW
Sbjct: 464 SLAALER-GQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEK-DLVSW 521
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
M+ GY +G EA M+ SGI+ E + ACS
Sbjct: 522 TVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACS 564
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 94/301 (31%), Positives = 146/301 (48%), Gaps = 17/301 (5%)
Query: 32 LLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVA 91
L+N K N + +L R+ + + ++++AR+LFDE+ RD SW MI GYV
Sbjct: 173 LMNGYAKIGNFRESLSLFKRMRELGIR--RVESARKLFDELGDRDVISWNSMISGYVSNG 230
Query: 92 DYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRN 151
++ + LF +M+ L +V V+ C T + LG+ +HG K +
Sbjct: 231 LSEKGLDLFEQMLLLGINTDLAT-----MVSVVAGCSNTGMLLLGRALHGYAIKASFGKE 285
Query: 152 ISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGR 211
++L L++ Y K L A VF + + V WT+ I REG F EM +
Sbjct: 286 LTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEK 345
Query: 212 ERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLR 271
E I + +T +++L AC N G+ +H I + ++SD +V L+DMY KC +
Sbjct: 346 EGISPDIFTITTILHACACTGLLEN-GKDVHNYIKENKMQSDLFVSNALMDMYAKCGSMG 404
Query: 272 DAERVF-ELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIA 330
DA VF E+ V K+I SWN M+ GY +N L EA M+ + S N + +A
Sbjct: 405 DAHSVFSEMQV--KDIVSWNTMIGGYSKNSLPNEALNLFVEMQYN------SKPNSITMA 456
Query: 331 C 331
C
Sbjct: 457 C 457
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 76/292 (26%), Positives = 134/292 (45%), Gaps = 13/292 (4%)
Query: 8 ITTDMYT--CLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTA 65
I+ D++T ++ C ++ N+I++ ++ L N L+ M+ CG + A
Sbjct: 348 ISPDIFTITTILHACACTGLLENGKDVHNYIKEN-KMQSDLFVSNALMDMYAKCGSMGDA 406
Query: 66 RQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLK 125
+F EM ++D SW MI GY + E + LF EM K + + + C+L
Sbjct: 407 HSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEMQYNSKPNSI------TMACILP 460
Query: 126 ACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVV 185
AC +E G+++HG + + G S + + +L++ Y K L A +F + + V
Sbjct: 461 ACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVS 520
Query: 186 WTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--GGVDDDGNCGRQMHA 243
WT I G+ + F EM I+ + +F S+L AC G+ D+G M
Sbjct: 521 WTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMR 580
Query: 244 NIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
N I +S+ Y C +VD+ + L A + +++ + + W A+L G
Sbjct: 581 NNCCIEPKSEHYA-C-IVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCG 630
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 55/103 (53%), Gaps = 2/103 (1%)
Query: 220 TFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFEL 279
T+ SVL+ C + + GR++H+ I +E D + LV MY C LR+ R+F+
Sbjct: 103 TYCSVLQLCADLKSIQD-GRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDK 161
Query: 280 IVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQES 322
+ ++K + WN ++ GY + G + E+ M+ GI+ ES
Sbjct: 162 VANEK-VFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVES 203
>gi|147794059|emb|CAN66615.1| hypothetical protein VITISV_022030 [Vitis vinifera]
Length = 818
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 80/269 (29%), Positives = 134/269 (49%), Gaps = 7/269 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+LL M+V CG A+ +F ++ L W MI G+ + + + + +M+
Sbjct: 85 TKLLGMYVLCGAFLDAKNIFYQLRLWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTL 144
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
FP V+KAC ++ LG+ VH + +G ++ + SLI FY + C+
Sbjct: 145 PDKYTFPY-----VIKACGGLNSVALGRVVHDKIQFMGFELDVFVGSSLIKFYSENGCIH 199
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
DA ++F ++ + V+W + + G + F EM R NS TF+ VL C
Sbjct: 200 DARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCA 259
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ N G Q+H +V GLE D V L+ MY KC L DA R+F+++ K ++ +W
Sbjct: 260 S-EIMINFGSQLHGLVVSSGLEMDSPVANTLLAMYAKCGHLFDARRLFDMM-PKTDLVTW 317
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
N M+ GY++NG EA+ + M ++G++
Sbjct: 318 NGMISGYVQNGFMDEASCLFHEMISAGMK 346
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 90/287 (31%), Positives = 139/287 (48%), Gaps = 7/287 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N LL M+ CG L AR+LFD MP D +W MI GYV E LF EM+
Sbjct: 287 NTLLAMYAKCGHLFDARRLFDMMPKTDLVTWNGMISGYVQNGFMDEASCLFHEMISAGMK 346
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ F +++ + A + GK++H + + G S ++ L +LI+ Y K R +E
Sbjct: 347 PDSITFSSFLPLLSEGA-----TLRQGKEIHCYIIRNGVSLDVFLKSALIDIYFKCRDVE 401
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A +F Q + VV TA I G + F+ + +ER++ NS T +SVL AC
Sbjct: 402 MAHKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACA 461
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
G+ G+++H +I+K G YV ++DMY KC L A + F + + K+ W
Sbjct: 462 GLAAL-TLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGKLDLAHQTF-IGISXKDAVCW 519
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
N+M+ +NG EA M +G + I+ AC+++ A
Sbjct: 520 NSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPA 566
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 76/280 (27%), Positives = 130/280 (46%), Gaps = 13/280 (4%)
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI 119
G + AR LFD MP +D W VM+ GYV D+ +F EM + + + F
Sbjct: 196 GCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTF---- 251
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
CVL C + + G Q+HGL+ G + + +L+ Y K L DA +F +
Sbjct: 252 -ACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANTLLAMYAKCGHLFDARRLFDMMP 310
Query: 180 RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC-- 237
+ + V W I + G + F EM +K +S TFSS L + +G
Sbjct: 311 KTDLVTWNGMISGYVQNGFMDEASCLFHEMISAGMKPDSITFSSFLP----LLSEGATLR 366
Query: 238 -GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGY 296
G+++H I++ G+ D +++ L+D+Y KCR + A ++F+ +I AM+ GY
Sbjct: 367 QGKEIHCYIIRNGVSLDVFLKSALIDIYFKCRDVEMAHKIFDQRT-PVDIVVCTAMISGY 425
Query: 297 IRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+ NG+ A + + ++ + + AC+ ++A
Sbjct: 426 VLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAA 465
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/284 (25%), Positives = 138/284 (48%), Gaps = 11/284 (3%)
Query: 36 IRKRVNIKPTLLFLNRLLL-MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQ 94
IR V++ +FL L+ ++ C ++ A ++FD+ D MI GYV
Sbjct: 376 IRNGVSLD---VFLKSALIDIYFKCRDVEMAHKIFDQRTPVDIVVCTAMISGYVLNGMNN 432
Query: 95 ECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISL 154
+ +F +++ + + + + VL AC + LGK++HG + K G + +
Sbjct: 433 NALEIFRWLLQER-----MRANSVTLASVLPACAGLAALTLGKELHGHILKNGHGGSCYV 487
Query: 155 TGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERI 214
++++ Y K L+ A F + + V W + I + + G + + F++MG
Sbjct: 488 GSAIMDMYAKCGKLDLAHQTFIGISXKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGT 547
Query: 215 KKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAE 274
K + + S+ L AC + + G+++HA +++ SD + + L+DMY KC L A
Sbjct: 548 KYDCVSISAALSACANLPAL-HYGKEIHAFMMRGAFRSDLFAESALIDMYSKCGNLDLAC 606
Query: 275 RVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
RVF+++ ++KN SWN+++ Y +G ++ + M GIQ
Sbjct: 607 RVFDMM-EEKNEVSWNSIIAAYGNHGRLKDSLNLFHGMLGDGIQ 649
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 101/222 (45%), Gaps = 10/222 (4%)
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
+V +L+ C + G+Q H + G N L L+ Y DA +F QL+
Sbjct: 49 LVSILQTCTDPSGLSHGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLR 108
Query: 180 RHNTVVWTAKIVNNCREGHFH-QVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCG 238
+ W I G F + FK +G + + YTF V+KACGG++ G
Sbjct: 109 LWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTL-PDKYTFPYVIKACGGLNSVA-LG 166
Query: 239 RQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIR 298
R +H I +G E D +V L+ Y + + DA +F+ + K + WN ML GY++
Sbjct: 167 RVVHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVL-WNVMLNGYVK 225
Query: 299 NGLYVEATKFLYLMKASGIQIQESLINDLRIACS-SISASKI 339
NG + AT M+ + E+ N + AC S+ AS+I
Sbjct: 226 NGDWDNATGVFMEMRRT-----ETNPNSVTFACVLSVCASEI 262
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/265 (24%), Positives = 108/265 (40%), Gaps = 27/265 (10%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+ CG+LD A Q F + +D W MI +E I LF R+ G
Sbjct: 494 MYAKCGKLDLAHQTFIGISXKDAVCWNSMITSCSQNGKPEEAIDLF-----RQMGMAGTK 548
Query: 115 FPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFV 174
+ I L AC + GK++H + + ++ +LI+ Y K L+ A V
Sbjct: 549 YDCVSISAALSACANLPALHYGKEIHAFMMRGAFRSDLFAESALIDMYSKCGNLDLACRV 608
Query: 175 FSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG--GVD 232
F ++ N V W + I G N F M + I+ + TF +++ ACG G
Sbjct: 609 FDMMEEKNEVSWNSIIAAYGNHGRLKDSLNLFHGMLGDGIQPDHVTFLAIISACGHAGQV 668
Query: 233 DDG----NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
D+G C + + ++ E+ C +VD++G+ L +A + + +
Sbjct: 669 DEGIHYFRCMTEELGIMARM-----EHYAC-MVDLFGRAGRLNEAFGMINSMPFSPDAGV 722
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMK 313
W GLY+E F+ ++
Sbjct: 723 W----------GLYLELVDFMEMLS 737
>gi|224122888|ref|XP_002318941.1| predicted protein [Populus trichocarpa]
gi|222857317|gb|EEE94864.1| predicted protein [Populus trichocarpa]
Length = 610
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 83/261 (31%), Positives = 128/261 (49%), Gaps = 8/261 (3%)
Query: 41 NIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLF 100
N K T + LL + G AR LFDEMP RD +W MI GY +Y + ++F
Sbjct: 39 NAKGTSILATDLLKSYFERGLTSQARNLFDEMPERDVVAWTTMISGYTHCNEYTQAWSVF 98
Query: 101 AEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRN-ISLTGSLI 159
+M+K A+ I VLKAC + G+ VHGL K I + +L+
Sbjct: 99 VDMVKNGNDPP----NAFTISSVLKACKGMKRVFCGRLVHGLAIKRRFMEGFIYVDNALM 154
Query: 160 NFYGKFRC-LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
+ Y + DA VF +K N V WT I G+ ++ F+EM + + N
Sbjct: 155 DMYASCGVGMRDACVVFHDIKEKNVVSWTTLIAGYTHRGNGNRALQIFREMLLDGVALNP 214
Query: 219 YTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE 278
++ S ++AC + N GRQ+H ++K G ESD V ++DMY +C L +A + F
Sbjct: 215 HSISIAVRACASIGSQ-NFGRQIHTAVIKHGFESDLPVTNSILDMYCRCGCLSEANKYFN 273
Query: 279 LIVDKKNIASWNAMLVGYIRN 299
+ + K++ +WN ++ GY R+
Sbjct: 274 DMTE-KDLITWNTLIAGYERS 293
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 77/284 (27%), Positives = 138/284 (48%), Gaps = 9/284 (3%)
Query: 50 NRLLLMHVSCG-QLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
N L+ M+ SCG + A +F ++ ++ SW +I GY + + +F EM+
Sbjct: 151 NALMDMYASCGVGMRDACVVFHDIKEKNVVSWTTLIAGYTHRGNGNRALQIFREMLLDG- 209
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+ + P I + V +AC + G+Q+H + K G ++ +T S+++ Y + CL
Sbjct: 210 ---VALNPHSISIAV-RACASIGSQNFGRQIHTAVIKHGFESDLPVTNSILDMYCRCGCL 265
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+A+ F+ + + + W I R F F +M E N +TF+S++ AC
Sbjct: 266 SEANKYFNDMTEKDLITWNTLIAGYERSDSIEPFF-IFSQMESEGFSPNCFTFTSLVAAC 324
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
CG+Q+H I + GL+ + + L+DMY KC + D+++ F + N+ S
Sbjct: 325 A-NAAALQCGQQVHGGIFRRGLDGNLELANALIDMYAKCGNIIDSQKNFSEM-SCTNLVS 382
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
W +M++GY +G EA + M SGI+ + + + ACS
Sbjct: 383 WTSMMIGYGTHGYGKEAVELFDEMVRSGIRPDQVVFMAVLHACS 426
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 120/250 (48%), Gaps = 10/250 (4%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L N +L M+ CG L A + F++M +D +W +I GY + +D E +F++M
Sbjct: 249 LPVTNSILDMYCRCGCLSEANKYFNDMTEKDLITWNTLIAGY-ERSDSIEPFFIFSQMES 307
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
F + ++ AC ++ G+QVHG +F+ G N+ L +LI+ Y K
Sbjct: 308 EGFSPNCFTFTS-----LVAACANAAALQCGQQVHGGIFRRGLDGNLELANALIDMYAKC 362
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
+ D+ FS++ N V WT+ ++ G+ + F EM R I+ + F +VL
Sbjct: 363 GNIIDSQKNFSEMSCTNLVSWTSMMIGYGTHGYGKEAVELFDEMVRSGIRPDQVVFMAVL 422
Query: 226 KAC--GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
AC G+ D G R ++ I ++ ++ + +VD+ G+ + DA ++ +
Sbjct: 423 HACSHAGLVDQGL--RYINCMINDYHIKPNQEIYGCVVDLLGRPGRVEDAYQLIRSMPFM 480
Query: 284 KNIASWNAML 293
+ + W A+L
Sbjct: 481 ADESVWGALL 490
Score = 44.7 bits (104), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 76/166 (45%), Gaps = 8/166 (4%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R + L N L+ M+ CG + +++ F EM + SW M++GY +E +
Sbjct: 342 RRGLDGNLELANALIDMYAKCGNIIDSQKNFSEMSCTNLVSWTSMMIGYGTHGYGKEAVE 401
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELG-KQVHGLLFKLGSSRNISLTGS 157
LF EM++ +VF A VL AC ++ G + ++ ++ N + G
Sbjct: 402 LFDEMVRSGIRPDQVVFMA-----VLHACSHAGLVDQGLRYINCMINDYHIKPNQEIYGC 456
Query: 158 LINFYGKFRCLEDA-DFVFSQLKRHNTVVWTAKIVNNCREGHFHQV 202
+++ G+ +EDA + S + VW A ++ C+ +F ++
Sbjct: 457 VVDLLGRPGRVEDAYQLIRSMPFMADESVWGA-LLGACKAHNFSRL 501
>gi|168044100|ref|XP_001774520.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162674075|gb|EDQ60588.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 350
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 83/280 (29%), Positives = 137/280 (48%), Gaps = 7/280 (2%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L M+ CG A ++F + RD W MI GY + + +F +M
Sbjct: 78 LTCMYFRCGSALDAHRVFKRVQNRDIIVWNAMIEGYCQAGLRDKALEMFKDMKIAGLAPD 137
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+ F + +LK+C +++++ GKQ+H + + G ++ + +L+N Y + L DA
Sbjct: 138 VASF-----LSILKSCNGSVHLDDGKQLHKAIIESGFELSVRVQTALVNMYCRCESLLDA 192
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
+F++L R + +WT I + H + F F+ M ++ N TF ++LKAC
Sbjct: 193 RKMFNKLPRKDIGLWTTMIAGYAQTDHGEEAFALFQAMRDTGLQPNKMTFLALLKACTRP 252
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
+ G+ +H +I GL+SDE V L++ Y KCR L DA +VF+ + +N+ SW A
Sbjct: 253 EFLQK-GKWLHNHIRCAGLDSDEKVGTALINAYSKCRSLVDARKVFDNLC-TRNVISWTA 310
Query: 292 MLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
++ Y RN EA MK G+Q E N + AC
Sbjct: 311 LIAAYSRNDRAEEALDLFEQMKREGVQPNEVTRNTVVKAC 350
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 108/217 (49%), Gaps = 12/217 (5%)
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE--DADFVFSQL 178
+ +LKA ++E G++VH + + ++ + +L Y FRC DA VF ++
Sbjct: 41 LSLLKAFRGPGDLESGRRVHNFILERQLESDVRVGTALTCMY--FRCGSALDAHRVFKRV 98
Query: 179 KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG---VDDDG 235
+ + +VW A I C+ G + FK+M + + +F S+LK+C G +DD
Sbjct: 99 QNRDIIVWNAMIEGYCQAGLRDKALEMFKDMKIAGLAPDVASFLSILKSCNGSVHLDD-- 156
Query: 236 NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
G+Q+H I++ G E VQ LV+MY +C L DA ++F + +K+I W M+ G
Sbjct: 157 --GKQLHKAIIESGFELSVRVQTALVNMYCRCESLLDARKMFNKL-PRKDIGLWTTMIAG 213
Query: 296 YIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
Y + EA M+ +G+Q + L AC+
Sbjct: 214 YAQTDHGEEAFALFQAMRDTGLQPNKMTFLALLKACT 250
>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 919
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 84/327 (25%), Positives = 155/327 (47%), Gaps = 18/327 (5%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRK---RVNIKPTLLFLNRLLLMHVSCGQLDTARQLF 69
Y CL++ CT+ AG L I + + + L+ M+ G LD AR++
Sbjct: 348 YPCLLRTCTY----AGEINLGEQIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRIL 403
Query: 70 DEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI-IVCVLKACV 128
+ + +D SW MI GYV +E + F +M + ++P I + + AC
Sbjct: 404 EVLEAKDVVSWTSMIAGYVQHEFCKEALETFKDM------QLFGIWPDNIGLASAISACA 457
Query: 129 CTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTA 188
M G+Q+H ++ G S ++S+ +L+N Y + ++A +F ++ + + W
Sbjct: 458 GIKAMRQGQQIHSRVYVSGYSADVSIWNALVNLYARCGRSKEAFSLFEAIEHKDKITWNG 517
Query: 189 KIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKI 248
+ + G + + F +M + +K N +TF S + A + D G+Q+HA ++K
Sbjct: 518 MVSGFAQSGLYEEALEVFIKMYQAGVKYNVFTFVSSISASANLADIKQ-GKQIHATVIKT 576
Query: 249 GLESDEYVQCGLVDMYGKCRLLRDAE-RVFELIVDKKNIASWNAMLVGYIRNGLYVEATK 307
G S+ V L+ +YGKC + DA+ + FE+ ++N SWN ++ ++G +EA
Sbjct: 577 GCTSETEVANALISLYGKCGSIEDAKMQFFEM--SERNHVSWNTIITSCSQHGWGLEALD 634
Query: 308 FLYLMKASGIQIQESLINDLRIACSSI 334
MK G++ + + ACS +
Sbjct: 635 LFDQMKQEGLKPNDVTFIGVLAACSHV 661
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 79/299 (26%), Positives = 143/299 (47%), Gaps = 13/299 (4%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
+ + P + LL ++V CG + A ++F + W +M+V Y ++D +
Sbjct: 272 KAGMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGDRTNVVLWNLMLVAYGQISDLAKSFD 331
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
LF +M+ +P C+L+ C + LG+Q+H L K G ++ ++G L
Sbjct: 332 LFCQMVAAGVRPNEFTYP-----CLLRTCTYAGEINLGEQIHLLSIKTGFESDMYVSGVL 386
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
I+ Y K+ L+ A + L+ + V WT+ I + + FK+M I ++
Sbjct: 387 IDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYVQHEFCKEALETFKDMQLFGIWPDN 446
Query: 219 YTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE 278
+S + AC G+ G+Q+H+ + G +D + LV++Y +C ++A +FE
Sbjct: 447 IGLASAISACAGIKAMRQ-GQQIHSRVYVSGYSADVSIWNALVNLYARCGRSKEAFSLFE 505
Query: 279 LIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISAS 337
I K I +WN M+ G+ ++GLY EA + M +G++ ++ SSISAS
Sbjct: 506 AIEHKDKI-TWNGMVSGFAQSGLYEEALEVFIKMYQAGVKY------NVFTFVSSISAS 557
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 82/294 (27%), Positives = 138/294 (46%), Gaps = 17/294 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ +++ G L A ++F EMP D ++ +I + + + + +F EM
Sbjct: 182 NALIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMR----- 236
Query: 110 HMLLVFPAWIIVCV-----LKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
W CV L AC ++ GKQ+H L K G S + + GSL++ Y K
Sbjct: 237 -----LSGWTPDCVTIASLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVK 291
Query: 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
+ +A +F R N V+W +V + + F+ F +M ++ N +T+ +
Sbjct: 292 CGVIVEALEIFKSGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCL 351
Query: 225 LKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
L+ C + N G Q+H +K G ESD YV L+DMY K L A R+ E +++ K
Sbjct: 352 LRTCTYAGEI-NLGEQIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILE-VLEAK 409
Query: 285 NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASK 338
++ SW +M+ GY+++ EA + M+ GI + AC+ I A +
Sbjct: 410 DVVSWTSMIAGYVQHEFCKEALETFKDMQLFGIWPDNIGLASAISACAGIKAMR 463
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 84/321 (26%), Positives = 154/321 (47%), Gaps = 15/321 (4%)
Query: 5 CLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRV---NIKPTLLFLNRLLLMHVSCGQ 61
C + + + C ++EC + S + L+ I + + + N L+ ++ G
Sbjct: 36 CRGLGSVDFACALREC---RGSVKHWPLVPVIHAKAITCGLGEDRIAGNLLIDLYAKKGL 92
Query: 62 LDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWII 120
+ AR++F+++ RD SW M+ GY +E + L+ +M H V P +++
Sbjct: 93 VQRARRVFEQLSARDNVSWVAMLSGYARNGLGEEAVGLYHQM------HCSGVVPTPYVL 146
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
VL AC E G+ VH ++K GS + +LI Y +F L A+ VFS++
Sbjct: 147 SSVLSACTKAALFEQGRLVHAQVYKQGSCSETVVGNALIALYLRFGSLSLAERVFSEMPY 206
Query: 181 HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQ 240
+ V + I + + G+ F+EM + T +S+L AC + D N G+Q
Sbjct: 207 CDRVTFNTLISRHAQCGNGESALEIFEEMRLSGWTPDCVTIASLLAACASIGDL-NKGKQ 265
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
+H+ ++K G+ D ++ L+D+Y KC ++ +A +F+ D+ N+ WN MLV Y +
Sbjct: 266 LHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFK-SGDRTNVVLWNLMLVAYGQIS 324
Query: 301 LYVEATKFLYLMKASGIQIQE 321
++ M A+G++ E
Sbjct: 325 DLAKSFDLFCQMVAAGVRPNE 345
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 113/246 (45%), Gaps = 9/246 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ ++ CG+ A LF+ + +D +W M+ G+ Y+E + +F +M +
Sbjct: 485 NALVNLYARCGRSKEAFSLFEAIEHKDKITWNGMVSGFAQSGLYEEALEVFIKMYQAGVK 544
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ + F V + A +++ GKQ+H + K G + + +LI+ YGK +E
Sbjct: 545 YNVFTF-----VSSISASANLADIKQGKQIHATVIKTGCTSETEVANALISLYGKCGSIE 599
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
DA F ++ N V W I + + G + + F +M +E +K N TF VL AC
Sbjct: 600 DAKMQFFEMSERNHVSWNTIITSCSQHGWGLEALDLFDQMKQEGLKPNDVTFIGVLAACS 659
Query: 230 --GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
G+ ++G + ++ I D Y C +VD+ G+ L A + E + N
Sbjct: 660 HVGLVEEGLGYFKSMSSEHGIHPRPDHYA-C-VVDILGRAGQLDRARKFVEEMPVSANAM 717
Query: 288 SWNAML 293
W +L
Sbjct: 718 VWRTLL 723
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 107/252 (42%), Gaps = 8/252 (3%)
Query: 84 IVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTM-NMELGKQVHGL 142
+ G++ D ++ ++LFA +++ +G + F C L+ C ++ + L +H
Sbjct: 13 LTGFLAHEDPEKLLSLFAAKVRQCRGLGSVDF-----ACALRECRGSVKHWPLVPVIHAK 67
Query: 143 LFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQV 202
G + LI+ Y K ++ A VF QL + V W A + R G +
Sbjct: 68 AITCGLGEDRIAGNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYARNGLGEEA 127
Query: 203 FNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVD 262
+ +M + Y SSVL AC GR +HA + K G S+ V L+
Sbjct: 128 VGLYHQMHCSGVVPTPYVLSSVLSACTKAALFEQ-GRLVHAQVYKQGSCSETVVGNALIA 186
Query: 263 MYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQES 322
+Y + L AERVF + + ++N ++ + + G A + M+ SG
Sbjct: 187 LYLRFGSLSLAERVFSEMPYCDRV-TFNTLISRHAQCGNGESALEIFEEMRLSGWTPDCV 245
Query: 323 LINDLRIACSSI 334
I L AC+SI
Sbjct: 246 TIASLLAACASI 257
>gi|77551591|gb|ABA94388.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
Length = 694
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 79/249 (31%), Positives = 125/249 (50%), Gaps = 9/249 (3%)
Query: 53 LLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHML 112
L M+ G+L AR LF EMP R+ +W ++ V D + T+ A R+ G +
Sbjct: 161 LDMYFKTGRLKLARHLFGEMPNRNVVAWNAVMTN--AVLDGRPLETIEAYFGLREAGGL- 217
Query: 113 LVFPAWIIVCVL-KACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
P + C AC M + LG+Q HG + K G ++S+ S+++FYGK RC A
Sbjct: 218 ---PNVVSACAFFNACAGAMYLSLGEQFHGFVVKCGFEMDVSVLNSMVDFYGKCRCAGKA 274
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
VF + N+V W + + + G + F + R + + SS L C G+
Sbjct: 275 RAVFDGMGVRNSVSWCSMVAAYAQNGAEEEAFAAYLGARRSGEEPTDFMVSSALTTCAGL 334
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
+ GR +HA V+ ++++ +V LVDMYGKC + DAE++F ++N+ +WNA
Sbjct: 335 LGL-HLGRALHAVAVRSCIDANIFVASALVDMYGKCGCVEDAEQIF-YETPQRNLVTWNA 392
Query: 292 MLVGYIRNG 300
M+ GY G
Sbjct: 393 MIGGYAHIG 401
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/287 (24%), Positives = 121/287 (42%), Gaps = 17/287 (5%)
Query: 16 LIKECTFQKDSAGAF-----ELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFD 70
++ C F AGA E + + + + LN ++ + C AR +FD
Sbjct: 220 VVSACAFFNACAGAMYLSLGEQFHGFVVKCGFEMDVSVLNSMVDFYGKCRCAGKARAVFD 279
Query: 71 EMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCT 130
M +R+ SW M+ Y +E + + R+ G F ++ L C
Sbjct: 280 GMGVRNSVSWCSMVAAYAQNGAEEEAFAAY--LGARRSGEEPTDF---MVSSALTTCAGL 334
Query: 131 MNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKI 190
+ + LG+ +H + + NI + +L++ YGK C+EDA+ +F + + N V W A I
Sbjct: 335 LGLHLGRALHAVAVRSCIDANIFVASALVDMYGKCGCVEDAEQIFYETPQRNLVTWNAMI 394
Query: 191 VNNCREGHFHQVFNDFKEMGRE-RIKKNSYTFSSVLKAC--GGVDDDGNCGRQMHANIVK 247
G F +M R N T +V+ +C GG+ DG +
Sbjct: 395 GGYAHIGDAQNALLVFDDMIRSGETAPNYITLVNVITSCSRGGLTKDGY--ELFETMRER 452
Query: 248 IGLES-DEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
G+E E+ C +VD+ G+ + A V + + + +I+ W A+L
Sbjct: 453 FGIEPRTEHYAC-VVDLLGRAGMEEQAYEVIQGMPMRPSISVWGALL 498
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 91/201 (45%), Gaps = 5/201 (2%)
Query: 119 IIVCVLKACVCTMNMELGKQVHGLLFKL-GSSRNISLTGSLINFYGKFRCLEDADFVFSQ 177
++ ++ + + + LG+ H +L + + + L+N Y K L A
Sbjct: 17 LLAAAFESAIASRSPRLGRAAHARALRLIAPALSPFICAHLVNLYSKLD-LPAAAAAALA 75
Query: 178 LKRHNTVV-WTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGN 236
H TVV +TA I + G + F M R ++ N +TF S KA
Sbjct: 76 SDPHPTVVSYTAFISGAAQHGRPLPALSAFAGMLRLGLRPNDFTFPSAFKAAASAPPRST 135
Query: 237 CGRQMHANIVKIG-LESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
G Q+H+ ++ G L D +V C +DMY K L+ A +F + + +N+ +WNA++
Sbjct: 136 IGPQIHSLAIRFGYLPVDPFVSCAALDMYFKTGRLKLARHLFGEMPN-RNVVAWNAVMTN 194
Query: 296 YIRNGLYVEATKFLYLMKASG 316
+ +G +E + + ++ +G
Sbjct: 195 AVLDGRPLETIEAYFGLREAG 215
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/257 (23%), Positives = 103/257 (40%), Gaps = 7/257 (2%)
Query: 79 SWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQ 138
S+ I G ++ FA M++ FP+ A +G Q
Sbjct: 84 SYTAFISGAAQHGRPLPALSAFAGMLRLGLRPNDFTFPS----AFKAAASAPPRSTIGPQ 139
Query: 139 VHGLLFKLGS-SRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREG 197
+H L + G + ++ + ++ Y K L+ A +F ++ N V W A + N +G
Sbjct: 140 IHSLAIRFGYLPVDPFVSCAALDMYFKTGRLKLARHLFGEMPNRNVVAWNAVMTNAVLDG 199
Query: 198 HFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQ 257
+ + + N + + AC G + G Q H +VK G E D V
Sbjct: 200 RPLETIEAYFGLREAGGLPNVVSACAFFNACAGAMYL-SLGEQFHGFVVKCGFEMDVSVL 258
Query: 258 CGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGI 317
+VD YGKCR A VF+ + +N SW +M+ Y +NG EA + SG
Sbjct: 259 NSMVDFYGKCRCAGKARAVFDGM-GVRNSVSWCSMVAAYAQNGAEEEAFAAYLGARRSGE 317
Query: 318 QIQESLINDLRIACSSI 334
+ + +++ C+ +
Sbjct: 318 EPTDFMVSSALTTCAGL 334
>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
Length = 920
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 74/267 (27%), Positives = 132/267 (49%), Gaps = 7/267 (2%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL ++V CG ++TA +F+ + W +M+V Y ++D + +F +M
Sbjct: 286 LLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPN 345
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+P C+L+ C CT +ELG+Q+H L K G ++ ++G LI+ Y K+RCL+ A
Sbjct: 346 KFTYP-----CILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKA 400
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
+ L++ + V WT+ I + + FKEM + ++ +S AC G+
Sbjct: 401 RKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGI 460
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
G Q+HA + G +D + LV++Y +C +A +F I D K+ +WN
Sbjct: 461 KAMRQ-GLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREI-DHKDEITWNG 518
Query: 292 MLVGYIRNGLYVEATKFLYLMKASGIQ 318
++ G+ ++ LY +A M +G +
Sbjct: 519 LISGFGQSRLYEQALMVFMKMSQAGAK 545
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 86/326 (26%), Positives = 144/326 (44%), Gaps = 16/326 (4%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRK---RVNIKPTLLFLNRLLLMHVSCGQLDTARQLF 69
Y C+++ CT G EL I + + + L+ M+ LD AR++
Sbjct: 349 YPCILRTCT----CTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKIL 404
Query: 70 DEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI-IVCVLKACV 128
+ + RD SW MI GYV +E + F EM V+P I + AC
Sbjct: 405 EMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQD------CGVWPDNIGLASAASACA 458
Query: 129 CTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTA 188
M G Q+H ++ G + +IS+ +L+N Y + E+A +F ++ + + W
Sbjct: 459 GIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIDHKDEITWNG 518
Query: 189 KIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKI 248
I + + Q F +M + K N +TF S + A + D G+Q+H VK
Sbjct: 519 LISGFGQSRLYEQALMVFMKMSQAGAKYNVFTFISAISALANLADIKQ-GKQVHGRAVKT 577
Query: 249 GLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKF 308
G S+ V L+ +YGKC + DA+ +F + +N SWN ++ ++G +EA
Sbjct: 578 GHTSETEVANALISLYGKCGSIEDAKMIFSEM-SLRNEVSWNTIITSCSQHGRGLEALDL 636
Query: 309 LYLMKASGIQIQESLINDLRIACSSI 334
MK G++ + + ACS +
Sbjct: 637 FDQMKQEGLKPNDVTFIGVLAACSHV 662
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 80/293 (27%), Positives = 130/293 (44%), Gaps = 44/293 (15%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
N L+ H CG + A Q+FDEM L +C+T
Sbjct: 213 FNTLISGHAQCGHGECALQIFDEMQLSGLRP---------------DCVT---------- 247
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+ +L AC +++ GKQ+H L K G S + GSL++ Y K +
Sbjct: 248 -----------VASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDI 296
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
E A +F+ R N V+W +V + + F F +M I N +T+ +L+ C
Sbjct: 297 ETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTC 356
Query: 229 ---GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
G ++ G Q+H+ +K G ESD YV L+DMY K R L A ++ E++ +K++
Sbjct: 357 TCTGQIE----LGEQIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEML-EKRD 411
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASK 338
+ SW +M+ GY+++ EA M+ G+ + AC+ I A +
Sbjct: 412 VVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMR 464
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 76/273 (27%), Positives = 127/273 (46%), Gaps = 9/273 (3%)
Query: 47 LFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR 106
L N L+ ++ G + ARQ+F E+ RD SW M+ GY +E L+++M
Sbjct: 79 LIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQRGLGKEAFRLYSQM--- 135
Query: 107 KKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
H V P +++ VL AC G+ +H ++K + +LI Y F
Sbjct: 136 ---HWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGF 192
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
+ A+ VF + + V + I + + GH F EM ++ + T +S+L
Sbjct: 193 GSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLL 252
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
AC V D G+Q+H+ ++K G+ D + L+D+Y KC + A +F L D+ N
Sbjct: 253 AACASVGDLQK-GKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNL-GDRTN 310
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
+ WN MLV Y + ++ + M+A+GI
Sbjct: 311 VVLWNLMLVAYGQISDLAKSFEIFGQMQATGIH 343
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 117/246 (47%), Gaps = 9/246 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ ++ CG+ + A LF E+ +D +W +I G+ Y++ + +F +M +
Sbjct: 486 NTLVNLYARCGRSEEAFSLFREIDHKDEITWNGLISGFGQSRLYEQALMVFMKMSQAGAK 545
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ + F + + A +++ GKQVHG K G + + +LI+ YGK +E
Sbjct: 546 YNVFTF-----ISAISALANLADIKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIE 600
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
DA +FS++ N V W I + + G + + F +M +E +K N TF VL AC
Sbjct: 601 DAKMIFSEMSLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACS 660
Query: 230 --GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
G+ ++G + +N+ + D Y C +VD+ G+ L A R + + N
Sbjct: 661 HVGLVEEGLSYFKSMSNVYGLNPIPDHYA-C-VVDILGRAGQLDRARRFVDEMPITANAM 718
Query: 288 SWNAML 293
W +L
Sbjct: 719 IWRTLL 724
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 98/223 (43%), Gaps = 17/223 (7%)
Query: 120 IVCVLKACVCTMN-MELGKQVHG--LLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFS 176
+ C L+AC N L ++H ++ LG+ R I LI+ Y K + A VF
Sbjct: 45 LTCALQACRGRGNRWPLVLEIHATSVVRGLGADRLIG--NLLIDLYAKNGLVWQARQVFK 102
Query: 177 QLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGN 236
+L + V W A + + G + F + +M + Y SSVL AC G
Sbjct: 103 ELSSRDHVSWVAMLSGYAQRGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSAC----TKGK 158
Query: 237 C---GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVF--ELIVDKKNIASWNA 291
GR +HA + K S+ +V L+ +Y + AERVF L D+ ++N
Sbjct: 159 LFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDR---VTFNT 215
Query: 292 MLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
++ G+ + G A + M+ SG++ + L AC+S+
Sbjct: 216 LISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASV 258
>gi|414869547|tpg|DAA48104.1| TPA: hypothetical protein ZEAMMB73_530850 [Zea mays]
Length = 1091
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 82/271 (30%), Positives = 135/271 (49%), Gaps = 10/271 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLR-DFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
++L+ M+V CG + +AR++FD M + + + W +++ GY V +++E ++LF +M
Sbjct: 354 SKLVFMYVKCGDMASARRVFDAMSSKGNVHVWNLIMGGYAKVGEFEESLSLFVQM----- 408
Query: 109 GHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
H L + P I C+LK C G HG + KLG ++ +LI+FY K
Sbjct: 409 -HELGIAPDEHAISCLLKCITCLSCARDGLVAHGYIVKLGFGAQCAVCNALISFYAKSNM 467
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
+ DA VF+++ R +T+ W + I G + F M + + +S T SVL A
Sbjct: 468 IGDAVLVFNRMPRQDTISWNSVISGCSSNGLNSEAIELFIRMWTQGQELDSVTLLSVLPA 527
Query: 228 CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
C GR +H VK GL + + L+DMY C + ++F + +KN+
Sbjct: 528 C-AQSRYWFAGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWQSTNQIFRSM-GQKNVV 585
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
SW AM+ Y+R GL+ + L M GI+
Sbjct: 586 SWTAMITSYMRAGLFDKVAGLLQEMVLDGIR 616
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 90/289 (31%), Positives = 138/289 (47%), Gaps = 22/289 (7%)
Query: 51 RLLLMHVSCGQLDTARQLFDEMPLR--DFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
RL+L ++ CG L AR +FD MP + D W ++ Y D+QE ++LF +M
Sbjct: 141 RLVLAYLKCGDLGEARTVFDGMPPQAADVRVWTSLMSAYAKAGDFQEAVSLFRQM----- 195
Query: 109 GHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
V P A + CVLK ++ G+ +HGLL KLG + ++ +LI Y +
Sbjct: 196 -QCCGVSPDAHAVSCVLKCVSSLGSLTEGEVIHGLLEKLGLGQACAVANALIAVYSRCGR 254
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFND-FKEMGRERIKKNSYTFSSVLK 226
+EDA VF + + + W + ++ C +H D F +M + + +S T SVL
Sbjct: 255 MEDAARVFDSMHPRDAISWNS-MIGGCFSNGWHGTAVDLFSKMWSQGTEISSVTVLSVLP 313
Query: 227 ACGGVDDDGNCGRQMHANIVKIG-LESDEYVQCGLVD---------MYGKCRLLRDAERV 276
AC G+ G G+ +H VK G L + VQ G+ D MY KC + A RV
Sbjct: 314 ACAGL-GYGLIGKAVHGYSVKSGLLWGLDSVQSGIDDAALGSKLVFMYVKCGDMASARRV 372
Query: 277 FELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLIN 325
F+ + K N+ WN ++ GY + G + E+ M GI E I+
Sbjct: 373 FDAMSSKGNVHVWNLIMGGYAKVGEFEESLSLFVQMHELGIAPDEHAIS 421
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 77/282 (27%), Positives = 129/282 (45%), Gaps = 8/282 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N LL M+ +C + Q+F M ++ SW MI Y+ + + L EM+ G
Sbjct: 557 NALLDMYSNCSDWQSTNQIFRSMGQKNVVSWTAMITSYMRAGLFDKVAGLLQEMVL--DG 614
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
VF + L A +++ GK VHG + G + + + +L+ Y K R +E
Sbjct: 615 IRPDVFA---VTSALHAFAGDESLKQGKSVHGYTIRNGMEKLLPVANALMEMYVKCRNVE 671
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
+A +F ++ + + W I R ++ F+ F +M + + N+ T + +L A
Sbjct: 672 EARLIFDRVTNKDVISWNTLIGGYSRNNFPNESFSLFSDM-LLQFRPNAVTMTCILPAAA 730
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ GR++HA ++ G D Y LVDMY KC L A +F+ + KKN+ SW
Sbjct: 731 SISSLER-GREIHAYALRRGFLEDSYASNALVDMYVKCGALLVARVLFDRLT-KKNLISW 788
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
M+ GY +G A M+ SGI+ + + + AC
Sbjct: 789 TIMIAGYGMHGFGKHAIALFEQMRGSGIEPDAASFSAILYAC 830
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 120/256 (46%), Gaps = 7/256 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ + + A +F+ MP +D SW +I G E I LF M + +
Sbjct: 456 NALISFYAKSNMIGDAVLVFNRMPRQDTISWNSVISGCSSNGLNSEAIELFIRMWTQGQ- 514
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ ++ VL AC + G+ VHG K G SL +L++ Y +
Sbjct: 515 ----ELDSVTLLSVLPACAQSRYWFAGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWQ 570
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
+ +F + + N V WTA I + R G F +V +EM + I+ + + +S L A
Sbjct: 571 STNQIFRSMGQKNVVSWTAMITSYMRAGLFDKVAGLLQEMVLDGIRPDVFAVTSALHAFA 630
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
G D+ G+ +H ++ G+E V L++MY KCR + +A +F+ + + K++ SW
Sbjct: 631 G-DESLKQGKSVHGYTIRNGMEKLLPVANALMEMYVKCRNVEEARLIFDRVTN-KDVISW 688
Query: 290 NAMLVGYIRNGLYVEA 305
N ++ GY RN E+
Sbjct: 689 NTLIGGYSRNNFPNES 704
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 86/343 (25%), Positives = 149/343 (43%), Gaps = 25/343 (7%)
Query: 5 CLPITTDMY--TCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQL 62
C ++ D + +C++K C S E+++ + +++ + N L+ ++ CG++
Sbjct: 197 CCGVSPDAHAVSCVLK-CVSSLGSLTEGEVIHGLLEKLGLGQACAVANALIAVYSRCGRM 255
Query: 63 DTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVC 122
+ A ++FD M RD SW MI G + + LF++M + + ++
Sbjct: 256 EDAARVFDSMHPRDAISWNSMIGGCFSNGWHGTAVDLFSKMWSQGT-----EISSVTVLS 310
Query: 123 VLKACVCTMNMELGKQVH------GLLFKLGSSR----NISLTGSLINFYGKFRCLEDAD 172
VL AC +GK VH GLL+ L S + + +L L+ Y K + A
Sbjct: 311 VLPACAGLGYGLIGKAVHGYSVKSGLLWGLDSVQSGIDDAALGSKLVFMYVKCGDMASAR 370
Query: 173 FVFSQL-KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK--ACG 229
VF + + N VW + + G F + + F +M I + + S +LK C
Sbjct: 371 RVFDAMSSKGNVHVWNLIMGGYAKVGEFEESLSLFVQMHELGIAPDEHAISCLLKCITCL 430
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
DG H IVK+G + V L+ Y K ++ DA VF + + I SW
Sbjct: 431 SCARDGLVA---HGYIVKLGFGAQCAVCNALISFYAKSNMIGDAVLVFNRMPRQDTI-SW 486
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
N+++ G NGL EA + M G ++ + + AC+
Sbjct: 487 NSVISGCSSNGLNSEAIELFIRMWTQGQELDSVTLLSVLPACA 529
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 67/290 (23%), Positives = 131/290 (45%), Gaps = 16/290 (5%)
Query: 8 ITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQ 67
+T+ ++ E Q S + + N + K + + N L+ M+V C ++ AR
Sbjct: 622 VTSALHAFAGDESLKQGKSVHGYTIRNGMEKLLPVA------NALMEMYVKCRNVEEARL 675
Query: 68 LFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKAC 127
+FD + +D SW +I GY E +LF++M+ + + + A + C+L A
Sbjct: 676 IFDRVTNKDVISWNTLIGGYSRNNFPNESFSLFSDMLLQFRPN------AVTMTCILPAA 729
Query: 128 VCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWT 187
++E G+++H + G + + +L++ Y K L A +F +L + N + WT
Sbjct: 730 ASISSLERGREIHAYALRRGFLEDSYASNALVDMYVKCGALLVARVLFDRLTKKNLISWT 789
Query: 188 AKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--GGVDDDGNCGRQMHANI 245
I G F++M I+ ++ +FS++L AC G+ +G +
Sbjct: 790 IMIAGYGMHGFGKHAIALFEQMRGSGIEPDAASFSAILYACCHSGLAAEGRRFFKAMQKE 849
Query: 246 VKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
KI + Y C +VD+ + L++A E + + + + W ++L G
Sbjct: 850 YKIEPKLKHYT-C-IVDLLSRTGDLKEALEFIESMPIEPDSSIWVSLLHG 897
>gi|413942600|gb|AFW75249.1| hypothetical protein ZEAMMB73_388642 [Zea mays]
Length = 693
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 95/309 (30%), Positives = 152/309 (49%), Gaps = 22/309 (7%)
Query: 29 AFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYV 88
AF L + + VN+ +L + CG ++ AR +FD MP+R+ SW MI GY
Sbjct: 143 AFALRAGLDELVNVSTAVLD------AYCKCGAVEAARAVFDCMPVRNSVSWNAMIDGYA 196
Query: 89 DVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGS 148
D + E + LF M++ + V A ++ L+AC ++ ++VH LL ++G
Sbjct: 197 DNGNATEAMALFWRMVQEG----VDVTDASVLAA-LQACGELGYLDEVRRVHELLVRVGL 251
Query: 149 SRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNT-VVWTAKIV----NNCREGHFHQVF 203
S N+S+T +LI Y K + + A VF++L T + W A I+ N C E
Sbjct: 252 SSNVSVTNALITTYAKCKRADLAAQVFNELGNKKTRISWNAMILGFTQNECPE----DAE 307
Query: 204 NDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDM 263
F M E ++ +S+T SV+ A + D R +H ++ L+ D YV L+DM
Sbjct: 308 RLFARMQLENVRPDSFTLVSVIPAVADISDPLQA-RWIHGYSIRHQLDQDVYVLTALIDM 366
Query: 264 YGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESL 323
Y KC + A R+F+ D+ ++ +WNAM+ GY +G A + MK +G E+
Sbjct: 367 YSKCGRVSIARRLFDSARDR-HVITWNAMIHGYGSHGFGQAAVELFEEMKGTGSLPNETT 425
Query: 324 INDLRIACS 332
+ ACS
Sbjct: 426 FLSVLAACS 434
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 80/325 (24%), Positives = 144/325 (44%), Gaps = 9/325 (2%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
+T L+K C + D A + + R + + L M+ C + AR++FD M
Sbjct: 19 FTALLKLCAARADLATGRAVHAQLEAR-GLASESIASTALANMYFKCRRPADARRVFDRM 77
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN 132
P RD +W ++ GY + M + G + +V VL AC
Sbjct: 78 PSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERP---DSVTLVSVLPACADARA 134
Query: 133 MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192
+ ++VH + G ++++ ++++ Y K +E A VF + N+V W A I
Sbjct: 135 LHACREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNSVSWNAMIDG 194
Query: 193 NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG--GVDDDGNCGRQMHANIVKIGL 250
G+ + F M +E + + + L+ACG G D+ R++H +V++GL
Sbjct: 195 YADNGNATEAMALFWRMVQEGVDVTDASVLAALQACGELGYLDEV---RRVHELLVRVGL 251
Query: 251 ESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLY 310
S+ V L+ Y KC+ A +VF + +KK SWNAM++G+ +N +A +
Sbjct: 252 SSNVSVTNALITTYAKCKRADLAAQVFNELGNKKTRISWNAMILGFTQNECPEDAERLFA 311
Query: 311 LMKASGIQIQESLINDLRIACSSIS 335
M+ ++ + + A + IS
Sbjct: 312 RMQLENVRPDSFTLVSVIPAVADIS 336
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 118/278 (42%), Gaps = 22/278 (7%)
Query: 28 GAFELLNHIRK------RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFN-SW 80
G L+ +R+ RV + + N L+ + C + D A Q+F+E+ + SW
Sbjct: 231 GELGYLDEVRRVHELLVRVGLSSNVSVTNALITTYAKCKRADLAAQVFNELGNKKTRISW 290
Query: 81 AVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQV 139
MI+G+ ++ LFA M V P ++ +V V+ A + + +
Sbjct: 291 NAMILGFTQNECPEDAERLFARMQLEN------VRPDSFTLVSVIPAVADISDPLQARWI 344
Query: 140 HGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHF 199
HG + +++ + +LI+ Y K + A +F + + + W A I G
Sbjct: 345 HGYSIRHQLDQDVYVLTALIDMYSKCGRVSIARRLFDSARDRHVITWNAMIHGYGSHGFG 404
Query: 200 HQVFNDFKEMGRERIKKNSYTFSSVLKAC---GGVDDDGNCGRQMHANIVK-IGLESDEY 255
F+EM N TF SVL AC G VD+ G++ A++ K GLE
Sbjct: 405 QAAVELFEEMKGTGSLPNETTFLSVLAACSHAGLVDE----GQKYFASMKKDYGLEPGME 460
Query: 256 VQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
+VD+ G+ L +A + + + I+ + AML
Sbjct: 461 HYGTMVDLLGRAGKLDEAWSFIKNMPIEPGISVYGAML 498
>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 738
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 92/271 (33%), Positives = 133/271 (49%), Gaps = 16/271 (5%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ +VS G LD AR+LFDE+P++D SW MI GYV ++E I F EM +
Sbjct: 203 LITGYVSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYEMQEAN---- 258
Query: 112 LLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
V P +V VL AC T + ELGK + + G N+ LT +LI+ Y K +
Sbjct: 259 --VLPNKSTMVVVLSACGHTRSGELGKWIGSWVRDNGFGSNLQLTNALIDMYCKCGETDI 316
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC-- 228
A +F ++ + + W I + + F+ M R +K N TF +L AC
Sbjct: 317 ARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVKPNDVTFLGILHACAC 376
Query: 229 -GGVDDDGNCGRQMHANIVK-IGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
G +D G+ +HA I K + S+ + L+DMY KC + AERVF + +N+
Sbjct: 377 LGALD----LGKWVHAYIDKNLRNSSNASLWTSLIDMYAKCGCIEAAERVFRSM-HSRNL 431
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGI 317
ASWNAML G+ +G A M G+
Sbjct: 432 ASWNAMLSGFAMHGHAERALALFSEMVNKGL 462
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 81/273 (29%), Positives = 129/273 (47%), Gaps = 18/273 (6%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L N L+ M+ CG+ D AR+LFD + +D SW MI GY ++ Y+E + LF M++
Sbjct: 298 LQLTNALIDMYCKCGETDIARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLR 357
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFK-LGSSRNISLTGSLINFYGK 164
+ F + +L AC C ++LGK VH + K L +S N SL SLI+ Y K
Sbjct: 358 SNVKPNDVTF-----LGILHACACLGALDLGKWVHAYIDKNLRNSSNASLWTSLIDMYAK 412
Query: 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEM-GRERIKKNSYTFSS 223
C+E A+ VF + N W A + GH + F EM + + + TF
Sbjct: 413 CGCIEAAERVFRSMHSRNLASWNAMLSGFAMHGHAERALALFSEMVNKGLFRPDDITFVG 472
Query: 224 VLKAC--GGVDDDGNCGRQMHANIVKIGLESD-EYVQCGLVDMYGKCRLLRDAERVFELI 280
VL AC G+ D G+ + + I G+ ++ C ++D+ + +AE + + +
Sbjct: 473 VLSACTQAGLVDLGH--QYFRSMIQDYGISPKLQHYGC-MIDLLARAEKFEEAEILMKNM 529
Query: 281 VDKKNIASWNAMLV-----GYIRNGLYVEATKF 308
+ + A W ++L G + G YV F
Sbjct: 530 EMEPDGAIWGSLLSACKAHGRVEFGEYVAERLF 562
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 89/195 (45%), Gaps = 2/195 (1%)
Query: 142 LLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQ 201
L+F S R+ +LI Y CL+DA +F ++ + V W A I + G F +
Sbjct: 187 LVFDKSSLRDAVSFTALITGYVSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEE 246
Query: 202 VFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLV 261
F EM + N T VL ACG G G+ + + + G S+ + L+
Sbjct: 247 AIVCFYEMQEANVLPNKSTMVVVLSACGHTRS-GELGKWIGSWVRDNGFGSNLQLTNALI 305
Query: 262 DMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQE 321
DMY KC A +F+ I ++K++ SWN M+ GY LY EA +M S ++ +
Sbjct: 306 DMYCKCGETDIARELFDGI-EEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVKPND 364
Query: 322 SLINDLRIACSSISA 336
+ AC+ + A
Sbjct: 365 VTFLGILHACACLGA 379
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/245 (23%), Positives = 102/245 (41%), Gaps = 40/245 (16%)
Query: 132 NMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFS------QLKRHNTVV 185
N+ KQ+H L+ K G + + + LI+F D + S Q +HN +
Sbjct: 40 NINTFKQIHSLIIKTGLNNTVFVQSKLIHFCA-VSPSGDLSYALSLFEENQQHHKHNVFI 98
Query: 186 WTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANI 245
W + I + F M ++ NS+TF + K+C G+Q+HA+
Sbjct: 99 WNSLIRGYSLSSSPLSSLHLFSRMLYYGVQPNSHTFPFLFKSCTKAKATHE-GKQLHAHA 157
Query: 246 VKIGLESDEYVQCGLVDMYGK------CRL-------------------------LRDAE 274
+K+ L + +V ++ MY RL L DA
Sbjct: 158 LKLALHFNPHVHTSVIHMYASVGEMDFARLVFDKSSLRDAVSFTALITGYVSQGCLDDAR 217
Query: 275 RVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
R+F+ I K++ SWNAM+ GY+++G + EA Y M+ + + +S + + AC
Sbjct: 218 RLFDEI-PVKDVVSWNAMISGYVQSGRFEEAIVCFYEMQEANVLPNKSTMVVVLSACGHT 276
Query: 335 SASKI 339
+ ++
Sbjct: 277 RSGEL 281
>gi|255559709|ref|XP_002520874.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540005|gb|EEF41583.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 833
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 152/310 (49%), Gaps = 12/310 (3%)
Query: 27 AGAFELLNHIRKRVNIKP---TLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVM 83
AG ++L I + +P ++ + LL M+ G + A +F M RD +W +
Sbjct: 355 AGLYDLGRLIHTEIVKRPLQSSITIQSALLTMYSKFGDSNYANSIFSTMKERDVVAWGSV 414
Query: 84 IVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGL 142
I G+ Y+E + F M LV P + I+ ++ AC ++LG +HG
Sbjct: 415 ISGFCQNRKYKEALDFFRAMEAD------LVKPDSDIMASIISACTGLEKVDLGCTIHGF 468
Query: 143 LFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQV 202
+ K G ++ + SL++ Y KF E A +FS + N V W + I CR
Sbjct: 469 VIKSGLQLDVFVASSLLDMYSKFGFPERAGNIFSDMPLKNLVAWNSIISCYCRNNLPDLS 528
Query: 203 FNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVD 262
N F ++ R + +S +F+SVL A V G+ +H +V++ + D V+ L+D
Sbjct: 529 INLFSQVLRNDLYPDSVSFTSVLAAISSVAALLK-GKSVHGYLVRLWIPFDLQVENTLID 587
Query: 263 MYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQES 322
MY KC LL+ A+ +FE I +KN+ +WN+M+ GY +G +A + M++SGI+ +
Sbjct: 588 MYIKCGLLKYAQHIFERI-SEKNLVAWNSMIGGYGSHGECSKAIELFDEMRSSGIKPDDV 646
Query: 323 LINDLRIACS 332
L +C+
Sbjct: 647 TFLSLLSSCN 656
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/270 (27%), Positives = 125/270 (46%), Gaps = 33/270 (12%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMP-----LRDFNSWAVMIVGYVDVADYQECITLFAEMM 104
+ L+ ++V CG A ++FD++P + D W +I GY +E + F M
Sbjct: 92 SSLINIYVKCGTFTDAVKVFDQLPKSGVSVDDVTIWNSIIDGYFRFGQLEEGMVQFGRM- 150
Query: 105 KRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
+ G+ + GKQ+H + + + + L +LI+ Y K
Sbjct: 151 -QSSGY-----------------------KEGKQIHSYIVRNMLNFDPFLETALIDTYFK 186
Query: 165 FRCLEDADFVFSQLK-RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSS 223
+A ++F +LK R N V W I G + + E +K S +F+
Sbjct: 187 CGRPTEARYLFKKLKDRSNIVAWNVMIGGFGENGLWENSLEYYLLAKTENVKVVSSSFTC 246
Query: 224 VLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
L ACG + + G+Q+H + +K+G E D YV L+ MYGKC+++ AE+VF + DK
Sbjct: 247 TLSACGQ-GEFVSFGKQVHCDAIKVGFEDDPYVHTSLLTMYGKCQMIESAEKVFNEVPDK 305
Query: 284 KNIASWNAMLVGYIRNGLYVEATKFLYLMK 313
+ I WNA++ Y+ NG +A + MK
Sbjct: 306 E-IELWNALISAYVGNGYAYDALRIYKQMK 334
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 78/303 (25%), Positives = 145/303 (47%), Gaps = 16/303 (5%)
Query: 36 IRKRVNIKPTLLFLNRLLL-MHVSCGQLDTARQLFDEMPLR-DFNSWAVMIVGYVDVADY 93
+R +N P FL L+ + CG+ AR LF ++ R + +W VMI G+ + +
Sbjct: 166 VRNMLNFDP---FLETALIDTYFKCGRPTEARYLFKKLKDRSNIVAWNVMIGGFGENGLW 222
Query: 94 QECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNIS 153
+ + + + K ++ +V ++ C L AC + GKQVH K+G +
Sbjct: 223 ENSLEYY---LLAKTENVKVVSSSF--TCTLSACGQGEFVSFGKQVHCDAIKVGFEDDPY 277
Query: 154 LTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRER 213
+ SL+ YGK + +E A+ VF+++ +W A I G+ + +K+M
Sbjct: 278 VHTSLLTMYGKCQMIESAEKVFNEVPDKEIELWNALISAYVGNGYAYDALRIYKQMKLCT 337
Query: 214 IKKNSYTFSSVLKAC--GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLR 271
+ +S+T +VL + G+ D GR +H IVK L+S +Q L+ MY K
Sbjct: 338 VLSDSFTILNVLTSSSMAGLYD---LGRLIHTEIVKRPLQSSITIQSALLTMYSKFGDSN 394
Query: 272 DAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
A +F + ++++ +W +++ G+ +N Y EA F M+A ++ ++ + AC
Sbjct: 395 YANSIFS-TMKERDVVAWGSVISGFCQNRKYKEALDFFRAMEADLVKPDSDIMASIISAC 453
Query: 332 SSI 334
+ +
Sbjct: 454 TGL 456
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 99/211 (46%), Gaps = 20/211 (9%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
+LKAC N++ GK +H + G + +T SLIN Y K DA VF QL +
Sbjct: 59 LLKACASLSNLQYGKTIHSSIITTGLHSDQYITSSLINIYVKCGTFTDAVKVFDQLPKSG 118
Query: 183 TVVWTAKIVNNCREGHFH--QVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQ 240
V I N+ +G+F Q+ + GR + SS K G+Q
Sbjct: 119 VSVDDVTIWNSIIDGYFRFGQLEEGMVQFGRMQ--------SSGYKE----------GKQ 160
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
+H+ IV+ L D +++ L+D Y KC +A +F+ + D+ NI +WN M+ G+ NG
Sbjct: 161 IHSYIVRNMLNFDPFLETALIDTYFKCGRPTEARYLFKKLKDRSNIVAWNVMIGGFGENG 220
Query: 301 LYVEATKFLYLMKASGIQIQESLINDLRIAC 331
L+ + ++ L K +++ S AC
Sbjct: 221 LWENSLEYYLLAKTENVKVVSSSFTCTLSAC 251
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 112/247 (45%), Gaps = 11/247 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+ LL M+ G + A +F +MPL++ +W +I Y I LF+++++
Sbjct: 482 SSLLDMYSKFGFPERAGNIFSDMPLKNLVAWNSIISCYCRNNLPDLSINLFSQVLRND-- 539
Query: 110 HMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
++P + VL A + GK VHG L +L ++ + +LI+ Y K L
Sbjct: 540 ----LYPDSVSFTSVLAAISSVAALLKGKSVHGYLVRLWIPFDLQVENTLIDMYIKCGLL 595
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+ A +F ++ N V W + I G + F EM IK + TF S+L +C
Sbjct: 596 KYAQHIFERISEKNLVAWNSMIGGYGSHGECSKAIELFDEMRSSGIKPDDVTFLSLLSSC 655
Query: 229 --GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
G+ ++G +M +K G+E +VD+YG+ L DA + + + +
Sbjct: 656 NHSGLIEEGLHLFEMMK--MKFGIEPRMEHYVNIVDLYGRAGCLGDAYSFVKNMPVEPDR 713
Query: 287 ASWNAML 293
+ W ++L
Sbjct: 714 SIWLSLL 720
>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Glycine max]
Length = 1227
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 89/288 (30%), Positives = 144/288 (50%), Gaps = 10/288 (3%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
++F N LL M+ CG L+ A Q F++M + SW +I YV Y + I LF EM
Sbjct: 689 VMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEM-- 746
Query: 106 RKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
KG V P + + VL AC C +++ G+ VH + K + + ++ +L++ Y K
Sbjct: 747 ESKG----VSPDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMALCLPVSNALMDMYAK 802
Query: 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
+E+A VFSQ+ + V W I + ++ F EM +E + + T + +
Sbjct: 803 CGSMEEAYLVFSQIPVKDIVSWNTMIGGYSKNSLPNEALKLFAEMQKES-RPDGITMACL 861
Query: 225 LKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
L ACG + GR +H I++ G S+ +V L+DMY KC L A +F++I +K
Sbjct: 862 LPACGSLAAL-EIGRGIHGCILRNGYSSELHVANALIDMYVKCGSLVHARLLFDMIPEK- 919
Query: 285 NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
++ +W M+ G +GL EA M+ +GI+ E + ACS
Sbjct: 920 DLITWTVMISGCGMHGLGNEAIATFQKMRIAGIKPDEITFTSILYACS 967
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 97/328 (29%), Positives = 152/328 (46%), Gaps = 16/328 (4%)
Query: 6 LPITTDMYT--CLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLD 63
L IT + YT C++K C G + ++ ++ +N L+ + G++D
Sbjct: 547 LGITGNSYTFSCILK-CFATLGRVGECKRIHGCVYKLGFGSYNTVVNSLIATYFKSGEVD 605
Query: 64 TARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCV 123
+A +LFDE+ RD SW MI G V + F +M+ + G L +V
Sbjct: 606 SAHKLFDELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLAT-----LVNS 660
Query: 124 LKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNT 183
+ AC ++ LG+ +HG K SR + +L++ Y K L DA F ++ +
Sbjct: 661 VAACANVGSLSLGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTV 720
Query: 184 VVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHA 243
V WT+ I REG + F EM + + + Y+ +SVL AC + + GR +H
Sbjct: 721 VSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHAC-ACGNSLDKGRDVHN 779
Query: 244 NIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYV 303
I K + V L+DMY KC + +A VF I K+I SWN M+ GY +N L
Sbjct: 780 YIRKNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQI-PVKDIVSWNTMIGGYSKNSLPN 838
Query: 304 EATKFLYLMKASGIQIQESLINDLRIAC 331
EA K M+ +ES + + +AC
Sbjct: 839 EALKLFAEMQ------KESRPDGITMAC 860
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 85/286 (29%), Positives = 140/286 (48%), Gaps = 14/286 (4%)
Query: 51 RLLLMHVSCGQLDTARQLFDEMPLRDFNS--WAVMIVGYVDVADYQECITLFAEMMKRKK 108
+L+ M+VSCG L R++FD + L D W +M+ Y + DY+E I LF +M K
Sbjct: 491 KLVFMYVSCGALREGRRIFDHI-LSDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQK--- 546
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELG--KQVHGLLFKLGSSRNISLTGSLINFYGKFR 166
+ + ++ C+LK C T+ +G K++HG ++KLG ++ SLI Y K
Sbjct: 547 --LGITGNSYTFSCILK-CFATLG-RVGECKRIHGCVYKLGFGSYNTVVNSLIATYFKSG 602
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
++ A +F +L + V W + I G H F +M R+ + T + +
Sbjct: 603 EVDSAHKLFDELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVA 662
Query: 227 ACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
AC V + GR +H VK + L+DMY KC L DA + FE + +K +
Sbjct: 663 ACANVGSL-SLGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKM-GQKTV 720
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
SW +++ Y+R GLY +A + Y M++ G+ + + AC+
Sbjct: 721 VSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACA 766
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 81/294 (27%), Positives = 140/294 (47%), Gaps = 17/294 (5%)
Query: 8 ITTDMY--TCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTA 65
++ D+Y T ++ C ++ N+IRK N+ L N L+ M+ CG ++ A
Sbjct: 751 VSPDVYSMTSVLHACACGNSLDKGRDVHNYIRKN-NMALCLPVSNALMDMYAKCGSMEEA 809
Query: 66 RQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI-IVCVL 124
+F ++P++D SW MI GY + E + LFAEM K + P I + C+L
Sbjct: 810 YLVFSQIPVKDIVSWNTMIGGYSKNSLPNEALKLFAEMQKESR-------PDGITMACLL 862
Query: 125 KACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTV 184
AC +E+G+ +HG + + G S + + +LI+ Y K L A +F + + +
Sbjct: 863 PACGSLAALEIGRGIHGCILRNGYSSELHVANALIDMYVKCGSLVHARLLFDMIPEKDLI 922
Query: 185 VWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--GGVDDDGNCGRQMH 242
WT I G ++ F++M IK + TF+S+L AC G+ ++G +
Sbjct: 923 TWTVMISGCGMHGLGNEAIATFQKMRIAGIKPDEITFTSILYACSHSGLLNEG--WGFFN 980
Query: 243 ANIVKIGLESD-EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
+ I + +E E+ C +VD+ + L A + E + K + W A+L G
Sbjct: 981 SMISECNMEPKLEHYAC-MVDLLARTGNLSKAYNLIETMPIKPDATIWGALLCG 1033
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 112/254 (44%), Gaps = 10/254 (3%)
Query: 84 IVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLL 143
I + +V D + + L M +K L + + + +C C ++ GK VH ++
Sbjct: 425 ICKFCEVGDLRNAVELL--RMSQKSELDLNAYSSILQLCAEHKC-----LQEGKMVHSVI 477
Query: 144 FKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTV-VWTAKIVNNCREGHFHQV 202
G L L+ Y L + +F + N V +W + + G + +
Sbjct: 478 SSNGIPIEGVLGAKLVFMYVSCGALREGRRIFDHILSDNKVFLWNLMMSEYAKIGDYRES 537
Query: 203 FNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVD 262
FK+M + I NSYTFS +LK + G C R +H + K+G S V L+
Sbjct: 538 IYLFKKMQKLGITGNSYTFSCILKCFATLGRVGECKR-IHGCVYKLGFGSYNTVVNSLIA 596
Query: 263 MYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQES 322
Y K + A ++F+ + D+ ++ SWN+M+ G + NG A +F M + + +
Sbjct: 597 TYFKSGEVDSAHKLFDELGDR-DVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLA 655
Query: 323 LINDLRIACSSISA 336
+ + AC+++ +
Sbjct: 656 TLVNSVAACANVGS 669
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 57/133 (42%), Gaps = 9/133 (6%)
Query: 188 AKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC---GRQMHAN 244
KI C G + + + N+Y SS+L+ C + C G+ +H+
Sbjct: 423 TKICKFCEVGDLRNAVELLRMSQKSELDLNAY--SSILQLCA----EHKCLQEGKMVHSV 476
Query: 245 IVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVE 304
I G+ + + LV MY C LR+ R+F+ I+ + WN M+ Y + G Y E
Sbjct: 477 ISSNGIPIEGVLGAKLVFMYVSCGALREGRRIFDHILSDNKVFLWNLMMSEYAKIGDYRE 536
Query: 305 ATKFLYLMKASGI 317
+ M+ GI
Sbjct: 537 SIYLFKKMQKLGI 549
>gi|449434268|ref|XP_004134918.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
mitochondrial-like [Cucumis sativus]
gi|449533166|ref|XP_004173548.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
mitochondrial-like [Cucumis sativus]
Length = 712
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 90/285 (31%), Positives = 141/285 (49%), Gaps = 14/285 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N ++ S G+++ A +LF++MP R+ SW +I G E + +F +M+ K
Sbjct: 178 NSMVHGFFSNGRVEDAIELFEKMPNRNVISWTSVIGGLDHNGRSFEALVVFHKMLASFKA 237
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ + C L AC +G Q+HGL+ K G N ++ SLI+FY + ++
Sbjct: 238 ------TSSTLACALTACANICTPFIGVQIHGLIVKTGYCFNEYISASLISFYANCKLID 291
Query: 170 DADFVFSQLKRHNTVVWTAKIVN---NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
+A +F+ N VVWTA + NCR QV FK M R + N + +S L
Sbjct: 292 NASSIFNDNVSRNVVVWTALLTGYGLNCRHTDALQV---FKGMMRMSVLPNQSSLTSALN 348
Query: 227 ACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
+C G++ GR++HA K+GLESD +V LV MY KC + D VF + +KN+
Sbjct: 349 SCCGLEAVDR-GREVHAVAHKLGLESDIFVSNSLVVMYTKCGHINDGIAVFTRM-SRKNV 406
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
SWN+++VG ++G A M + + E + L AC
Sbjct: 407 VSWNSIIVGCAQHGFGRWALTLFAQMIRTRVDPDEITLAGLLSAC 451
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 84/311 (27%), Positives = 140/311 (45%), Gaps = 42/311 (13%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N LL H+ G++D AR LF++M N + +MI GY D ++ + LF EM +
Sbjct: 54 NYLLSFHLRNGRIDEARSLFNKMSSPGVNLYTMMIGGYADEGRLEDALKLFYEMPVKD-- 111
Query: 110 HMLLVFPAWIIVCVLKACV--------CTMN------------------MELGK-QVHGL 142
+W +LK C+ C M +E G+ +V
Sbjct: 112 -----LISW--NSMLKGCLKCGDLTMACNMFDKMSERNVVSWTTIINGLLEFGRVEVAEC 164
Query: 143 LFKLGSSRNISLTGSLIN-FYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQ 201
LF++ +++++ S+++ F+ R +EDA +F ++ N + WT+ I G +
Sbjct: 165 LFRVMPTKDVTAWNSMVHGFFSNGR-VEDAIELFEKMPNRNVISWTSVIGGLDHNGRSFE 223
Query: 202 VFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLV 261
F +M K S T + L AC + G Q+H IVK G +EY+ L+
Sbjct: 224 ALVVFHKM-LASFKATSSTLACALTACANICTP-FIGVQIHGLIVKTGYCFNEYISASLI 281
Query: 262 DMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATK-FLYLMKASGIQIQ 320
Y C+L+ +A +F V +N+ W A+L GY N + +A + F +M+ S + Q
Sbjct: 282 SFYANCKLIDNASSIFNDNVS-RNVVVWTALLTGYGLNCRHTDALQVFKGMMRMSVLPNQ 340
Query: 321 ESLINDLRIAC 331
SL + L C
Sbjct: 341 SSLTSALNSCC 351
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 115/251 (45%), Gaps = 11/251 (4%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ + +C +D A +F++ R+ W ++ GY + + + +F MM+
Sbjct: 280 LISFYANCKLIDNASSIFNDNVSRNVVVWTALLTGYGLNCRHTDALQVFKGMMR------ 333
Query: 112 LLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
+ V P + L +C ++ G++VH + KLG +I ++ SL+ Y K + D
Sbjct: 334 MSVLPNQSSLTSALNSCCGLEAVDRGREVHAVAHKLGLESDIFVSNSLVVMYTKCGHIND 393
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG- 229
VF+++ R N V W + IV + G F +M R R+ + T + +L ACG
Sbjct: 394 GIAVFTRMSRKNVVSWNSIIVGCAQHGFGRWALTLFAQMIRTRVDPDEITLAGLLSACGH 453
Query: 230 -GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
G+ G C + I + ++ Y +VD+ G+ L +AE + ++ K N
Sbjct: 454 SGMLTKGRCFFKHFGKNFGIEMTNEHY--SSMVDLLGRYGQLEEAEALIHIMPGKANYMV 511
Query: 289 WNAMLVGYIRN 299
W A+L I +
Sbjct: 512 WLALLSSSINH 522
>gi|357440191|ref|XP_003590373.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355479421|gb|AES60624.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 840
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 90/317 (28%), Positives = 152/317 (47%), Gaps = 19/317 (5%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
Y ++ EC ++ + H+ K + P++ RL++++ C L A +FDEM
Sbjct: 246 YNAILNECVNKRAFREGQRVHAHMIKTRYL-PSVFLRTRLIVLYTKCDSLGDAHNVFDEM 304
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLF-AEMMKRKKG-----HMLLVFPAWIIVC---- 122
P R+ SW MI Y + + LF A++ G + L P VC
Sbjct: 305 PERNVVSWTAMISAYSQRGYASQALNLFFADVKISLTGVYAIDKLKLSNPNRPWVCTEPN 364
Query: 123 ------VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFS 176
VL +C ++ LG+Q+H L+ KL ++ + SL++ Y K + +A VF
Sbjct: 365 EFTFATVLTSCTSSLGFILGRQIHSLIIKLNYEDHVFVGSSLLDMYAKDGKIHEARTVFE 424
Query: 177 QLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGN 236
L + V TA I + G + F+ + E +K N T++ VL A G+ +
Sbjct: 425 CLPERDVVSCTAIISGYAQLGLDEEALELFRRLQGEGMKSNYVTYTGVLTALSGL-AALD 483
Query: 237 CGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGY 296
G+Q+H ++++ + S +Q L+DMY KC L + R+F+ + + + + SWNAMLVGY
Sbjct: 484 LGKQVHNHVLRSEIPSFVVLQNSLIDMYSKCGNLTYSRRIFDTMYE-RTVISWNAMLVGY 542
Query: 297 IRNGLYVEATKFLYLMK 313
++G E K LM+
Sbjct: 543 SKHGEGREVLKLFTLMR 559
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 64/259 (24%), Positives = 117/259 (45%), Gaps = 11/259 (4%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
++N + + + LL M+ G++ AR +F+ +P RD S +I GY + +E +
Sbjct: 393 KLNYEDHVFVGSSLLDMYAKDGKIHEARTVFECLPERDVVSCTAIISGYAQLGLDEEALE 452
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
LF + + + VL A ++LGKQVH + + + L SL
Sbjct: 453 LFRRLQGEGMKSNYVTYTG-----VLTALSGLAALDLGKQVHNHVLRSEIPSFVVLQNSL 507
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRE-RIKKN 217
I+ Y K L + +F + + W A +V + G +V F M E ++K +
Sbjct: 508 IDMYSKCGNLTYSRRIFDTMYERTVISWNAMLVGYSKHGEGREVLKLFTLMREETKVKPD 567
Query: 218 SYTFSSVLKAC--GGVDDDG-NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAE 274
S T +VL C GG++D G N M + +++ + + Y C +VD+ G+ + +A
Sbjct: 568 SVTILAVLSGCSHGGLEDKGLNIFNDMSSGKIEVEPKMEHY-GC-VVDLLGRSGRVEEAF 625
Query: 275 RVFELIVDKKNIASWNAML 293
+ + + A W ++L
Sbjct: 626 EFIKKMPFEPTAAIWGSLL 644
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 7/95 (7%)
Query: 34 NHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADY 93
NH+ R I ++ N L+ M+ CG L +R++FD M R SW M+VGY +
Sbjct: 490 NHVL-RSEIPSFVVLQNSLIDMYSKCGNLTYSRRIFDTMYERTVISWNAMLVGYSKHGEG 548
Query: 94 QECITLFAEMMKRKKGHMLLVFPAWI-IVCVLKAC 127
+E + LF M + K V P + I+ VL C
Sbjct: 549 REVLKLFTLMREETK-----VKPDSVTILAVLSGC 578
>gi|347954470|gb|AEP33735.1| chlororespiratory reduction 21, partial [Olimarabidopsis pumila]
Length = 811
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 75/218 (34%), Positives = 116/218 (53%), Gaps = 8/218 (3%)
Query: 124 LKACVCTMNMELGKQVHGLLFKLGS--SRNISLTGSLINFYGKFRCLEDADFVFSQLKRH 181
L+ CV ++ GKQ+H + K G +RN + L+ FY K LE A+ +FS+L+
Sbjct: 57 LQGCVYERDLSTGKQIHARILKNGDFYARNEYIETKLVIFYAKCDALEXAEVIFSKLRVR 116
Query: 182 NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQM 241
N W A I CR G F EM I +++ +V KACG + GR +
Sbjct: 117 NVFSWAAIIGVKCRIGLCEGALMGFVEMLENEIFPDNFVVPNVCKACGALQWS-RFGRGV 175
Query: 242 HANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGL 301
H ++K GLE +V L DMYGKC +L DA +VF+ I ++N+ +WNA++VGY++NG+
Sbjct: 176 HGYVIKAGLEDCVFVASSLADMYGKCGVLDDARKVFDEI-PERNVVAWNALMVGYVQNGM 234
Query: 302 YVEATKFLYLMKASGIQIQESLINDLRIACSSISASKI 339
EA + M+ G++ ++ C S SA+ +
Sbjct: 235 NEEAIRLFSDMRKEGVEPTRVTVS----TCLSASANMV 268
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 81/264 (30%), Positives = 137/264 (51%), Gaps = 9/264 (3%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+ CG LD AR++FDE+P R+ +W ++VGYV +E I LF++M RK+G V
Sbjct: 197 MYGKCGVLDDARKVFDEIPERNVVAWNALMVGYVQNGMNEEAIRLFSDM--RKEG----V 250
Query: 115 FPAWIIVCV-LKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADF 173
P + V L A + +E GKQ H + G + L SL+NFY K +E A+
Sbjct: 251 EPTRVTVSTCLSASANMVGVEEGKQSHAIAIVNGLELDNILGTSLLNFYCKVGLIEYAEM 310
Query: 174 VFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDD 233
VF ++ + V W I ++G + M E++K + T S+++ A ++
Sbjct: 311 VFDRMFDKDVVTWNLLISGYVQQGLVEDAIYMSQLMRLEKLKYDCVTLSTLMSAAARTEN 370
Query: 234 DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
G+++ ++ L++D + +DMY KC + DA++VF+ V+ K++ WN +L
Sbjct: 371 L-KFGKEVQCYCIRHSLDTDIVLASTTMDMYAKCGSIVDAKKVFDSTVE-KDLILWNTLL 428
Query: 294 VGYIRNGLYVEATKFLYLMKASGI 317
Y ++GL EA + Y M+ +
Sbjct: 429 AAYAQSGLSGEALRLFYEMQLESV 452
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 83/311 (26%), Positives = 152/311 (48%), Gaps = 16/311 (5%)
Query: 8 ITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFL-NRLLLMHVSCGQLDTAR 66
I ++Y ++ C +++D + ++ I K + ++ +L++ + C L+ A
Sbjct: 48 IGPEIYGEXLQGCVYERDLSTGKQIHARILKNGDFYARNEYIETKLVIFYAKCDALEXAE 107
Query: 67 QLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCVLK 125
+F ++ +R+ SWA +I + + + F EM++ + +FP +++ V K
Sbjct: 108 VIFSKLRVRNVFSWAAIIGVKCRIGLCEGALMGFVEMLENE------IFPDNFVVPNVCK 161
Query: 126 ACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVV 185
AC G+ VHG + K G + + SL + YGK L+DA VF ++ N V
Sbjct: 162 ACGALQWSRFGRGVHGYVIKAGLEDCVFVASSLADMYGKCGVLDDARKVFDEIPERNVVA 221
Query: 186 WTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG---GVDDDGNCGRQMH 242
W A +V + G + F +M +E ++ T S+ L A GV++ G+Q H
Sbjct: 222 WNALMVGYVQNGMNEEAIRLFSDMRKEGVEPTRVTVSTCLSASANMVGVEE----GKQSH 277
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
A + GLE D + L++ Y K L+ AE VF+ + D K++ +WN ++ GY++ GL
Sbjct: 278 AIAIVNGLELDNILGTSLLNFYCKVGLIEYAEMVFDRMFD-KDVVTWNLLISGYVQQGLV 336
Query: 303 VEATKFLYLMK 313
+A LM+
Sbjct: 337 EDAIYMSQLMR 347
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 102/220 (46%), Gaps = 20/220 (9%)
Query: 41 NIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFN----SWAVMIVGYVDVADYQEC 96
++ P ++ N ++L + G+++ A+++F +M + SW M+ G V +E
Sbjct: 451 SVPPNVITWNLIILSLLRNGEVNEAKEMFLQMQSSGISPNLISWTTMMNGMVQNGCSEEA 510
Query: 97 ITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFK-LGSSRNISLT 155
I +M + L A+ I L A ++ G+ +HG + + L S ++S+
Sbjct: 511 ILFLRKMQESG-----LRPNAFSITVALSASANLASLHFGRSIHGYIIRNLRHSSSVSIE 565
Query: 156 GSLINFYGKFRCLEDADFVF-----SQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMG 210
SL++ Y K + A+ VF S+L +N ++ + N +E ++ ++MG
Sbjct: 566 TSLVDMYAKCGDINKAERVFGSKLYSELPLYNAMISAYALYGNVKEAI--ALYRSLEDMG 623
Query: 211 RERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGL 250
IK +S TF+S+L AC D A ++K G+
Sbjct: 624 ---IKPDSVTFTSLLSACNHAGDIDQAVGVFTAMVLKHGM 660
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/270 (21%), Positives = 110/270 (40%), Gaps = 44/270 (16%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL + G ++ A +FD M +D +W ++I GYV ++ I + +++M+ +K
Sbjct: 295 LLNFYCKVGLIEYAEMVFDRMFDKDVVTWNLLISGYVQQGLVEDAIYM-SQLMRLEK--- 350
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
L + + ++ A T N++ GK+V + +I L + ++ Y K + DA
Sbjct: 351 -LKYDCVTLSTLMSAAARTENLKFGKEVQCYCIRHSLDTDIVLASTTMDMYAKCGSIVDA 409
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--- 228
VF + ++W + + G + F EM E + N T++ ++ +
Sbjct: 410 KKVFDSTVEKDLILWNTLLAAYAQSGLSGEALRLFYEMQLESVPPNVITWNLIILSLLRN 469
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
G V++ QM ++ + N+ S
Sbjct: 470 GEVNEAKEMFLQMQSSGI------------------------------------SPNLIS 493
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
W M+ G ++NG EA FL M+ SG++
Sbjct: 494 WTTMMNGMVQNGCSEEAILFLRKMQESGLR 523
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 62/295 (21%), Positives = 110/295 (37%), Gaps = 39/295 (13%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R ++ ++ + + M+ CG + A+++FD +D W ++ Y E +
Sbjct: 383 RHSLDTDIVLASTTMDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAYAQSGLSGEALR 442
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
LF EM L P +I L N E+ + +F S IS
Sbjct: 443 LFYEMQ-------LESVPPNVITWNLIILSLLRNGEVNEAKE--MFLQMQSSGIS----- 488
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
N + WT + + G + ++M ++ N+
Sbjct: 489 ----------------------PNLISWTTMMNGMVQNGCSEEAILFLRKMQESGLRPNA 526
Query: 219 YTFSSVLKACGGVDDDGNCGRQMHANIVK-IGLESDEYVQCGLVDMYGKCRLLRDAERVF 277
++ + L A + + GR +H I++ + S ++ LVDMY KC + AERVF
Sbjct: 527 FSITVALSASANLASL-HFGRSIHGYIIRNLRHSSSVSIETSLVDMYAKCGDINKAERVF 585
Query: 278 ELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+ + +NAM+ Y G EA ++ GI+ L AC+
Sbjct: 586 GSKL-YSELPLYNAMISAYALYGNVKEAIALYRSLEDMGIKPDSVTFTSLLSACN 639
>gi|255543567|ref|XP_002512846.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223547857|gb|EEF49349.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 553
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 84/269 (31%), Positives = 135/269 (50%), Gaps = 7/269 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N LL + ++ A +LF +MP D S+ VMI Y + Y+E I LF E+ K
Sbjct: 283 NSLLDFYSKHDCVNDAWKLFSKMPELDGVSYNVMITAYSWIGQYRESIDLFRELQFTKFE 342
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
F +L T+++++G+Q+H G+ + + SL++ Y K E
Sbjct: 343 RRNFPF-----ATMLSIAGNTLDLQMGQQLHSHAIVTGADLEVLVANSLVDMYAKCGRSE 397
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A+ +F +L +TV WTA I N ++G + F EM R + + TF+SVLKA
Sbjct: 398 YAERIFVKLSSKSTVPWTALISANVQKGLLEEGLKLFNEMRRTNVSADQATFASVLKASA 457
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ + G+Q+H+ +++ G S+ Y LVDMY KC +++A R F+ + +N+ SW
Sbjct: 458 NLASI-SLGKQLHSYLIRSGFWSNVYSGSALVDMYAKCGSVKEAIRTFKEM-PGRNVISW 515
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
NA++ Y +NG K M SG Q
Sbjct: 516 NALISAYAQNGDGEATLKSFEEMVLSGYQ 544
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 79/324 (24%), Positives = 155/324 (47%), Gaps = 8/324 (2%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
+ L+ C + + F++ H+ K + ++ N L+ + +LD A ++F EM
Sbjct: 146 FATLLSGCNDPEMTKELFQVHTHVVK-LGHGSAVIICNSLVDSYCKMHRLDLAHRIFKEM 204
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN 132
RD ++ +I GY ++ I LF +M F A VL AC+ +
Sbjct: 205 VERDSVTYNALITGYGKEGLNEDAIRLFTQMQNLGFEPSDFTFQA-----VLCACIGLDD 259
Query: 133 MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192
+ G+Q+HG K+G N+ + SL++FY K C+ DA +FS++ + V + I
Sbjct: 260 IIFGQQIHGYAVKMGLVWNVFVGNSLLDFYSKHDCVNDAWKLFSKMPELDGVSYNVMITA 319
Query: 193 NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLES 252
G + + + F+E+ + ++ ++ F+++L G D G+Q+H++ + G +
Sbjct: 320 YSWIGQYRESIDLFRELQFTKFERRNFPFATMLSIAGNT-LDLQMGQQLHSHAIVTGADL 378
Query: 253 DEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLM 312
+ V LVDMY KC AER+F + + K+ W A++ ++ GL E K M
Sbjct: 379 EVLVANSLVDMYAKCGRSEYAERIF-VKLSSKSTVPWTALISANVQKGLLEEGLKLFNEM 437
Query: 313 KASGIQIQESLINDLRIACSSISA 336
+ + + ++ + A +++++
Sbjct: 438 RRTNVSADQATFASVLKASANLAS 461
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 77/258 (29%), Positives = 125/258 (48%), Gaps = 9/258 (3%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
+N ++L +V L AR+LFD M R +W ++I GY + E LF+ M++ K
Sbjct: 80 VNMMILGYVKERNLSIARELFDSMVDRTAVTWTILIGGYCQFDQFSEAFKLFSNMIRDGK 139
Query: 109 GHMLLVFPAWIIVCVLKACV-CTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
+ F +L C M EL QVH + KLG + + SL++ Y K
Sbjct: 140 KPDYVTF-----ATLLSGCNDPEMTKEL-FQVHTHVVKLGHGSAVIICNSLVDSYCKMHR 193
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
L+ A +F ++ ++V + A I +EG F +M + + +TF +VL A
Sbjct: 194 LDLAHRIFKEMVERDSVTYNALITGYGKEGLNEDAIRLFTQMQNLGFEPSDFTFQAVLCA 253
Query: 228 CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
C G+DD G+Q+H VK+GL + +V L+D Y K + DA ++F + + +
Sbjct: 254 CIGLDDI-IFGQQIHGYAVKMGLVWNVFVGNSLLDFYSKHDCVNDAWKLFSKMPELDGV- 311
Query: 288 SWNAMLVGYIRNGLYVEA 305
S+N M+ Y G Y E+
Sbjct: 312 SYNVMITAYSWIGQYRES 329
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 89/192 (46%), Gaps = 8/192 (4%)
Query: 143 LFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQV 202
LF +N +I Y K R L A +F + V WT I C+ F +
Sbjct: 68 LFDQMPHKNTVSVNMMILGYVKERNLSIARELFDSMVDRTAVTWTILIGGYCQFDQFSEA 127
Query: 203 FNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGR---QMHANIVKIGLESDEYVQCG 259
F F M R+ K + TF+++L C +D + Q+H ++VK+G S +
Sbjct: 128 FKLFSNMIRDGKKPDYVTFATLLSGC----NDPEMTKELFQVHTHVVKLGHGSAVIICNS 183
Query: 260 LVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQI 319
LVD Y K L A R+F+ +V++ ++ ++NA++ GY + GL +A + M+ G +
Sbjct: 184 LVDSYCKMHRLDLAHRIFKEMVERDSV-TYNALITGYGKEGLNEDAIRLFTQMQNLGFEP 242
Query: 320 QESLINDLRIAC 331
+ + AC
Sbjct: 243 SDFTFQAVLCAC 254
>gi|15228265|ref|NP_190368.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207726|sp|Q9STS9.1|PP268_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g47840
gi|4741201|emb|CAB41867.1| putative protein [Arabidopsis thaliana]
gi|332644818|gb|AEE78339.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 706
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 83/280 (29%), Positives = 139/280 (49%), Gaps = 7/280 (2%)
Query: 57 VSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP 116
++ G L ARQ+FD+MP D SW +I YV + E + LF+ M R H V P
Sbjct: 51 INAGNLRAARQVFDKMPHGDIVSWTSIIKRYVTANNSDEALILFSAM--RVVDHA--VSP 106
Query: 117 -AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVF 175
++ VLKAC + N+ G+ +H K ++ + SL++ Y + ++ + VF
Sbjct: 107 DTSVLSVVLKACGQSSNIAYGESLHAYAVKTSLLSSVYVGSSLLDMYKRVGKIDKSCRVF 166
Query: 176 SQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDG 235
S++ N V WTA I G + + F EM R ++YTF+ LKAC G+
Sbjct: 167 SEMPFRNAVTWTAIITGLVHAGRYKEGLTYFSEMSRSEELSDTYTFAIALKACAGLRQV- 225
Query: 236 NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
G+ +H +++ G + V L MY +C ++D +FE + ++++ SW +++V
Sbjct: 226 KYGKAIHTHVIVRGFVTTLCVANSLATMYTECGEMQDGLCLFENM-SERDVVSWTSLIVA 284
Query: 296 YIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
Y R G V+A + M+ S + E + AC+S+S
Sbjct: 285 YKRIGQEVKAVETFIKMRNSQVPPNEQTFASMFSACASLS 324
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 78/309 (25%), Positives = 145/309 (46%), Gaps = 8/309 (2%)
Query: 10 TDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLF 69
T + + ++K C Q + E L+ + ++ ++ + LL M+ G++D + ++F
Sbjct: 108 TSVLSVVLKACG-QSSNIAYGESLHAYAVKTSLLSSVYVGSSLLDMYKRVGKIDKSCRVF 166
Query: 70 DEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVC 129
EMP R+ +W +I G V Y+E +T F+EM + ++ + + LKAC
Sbjct: 167 SEMPFRNAVTWTAIITGLVHAGRYKEGLTYFSEMSRSEE-----LSDTYTFAIALKACAG 221
Query: 130 TMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAK 189
++ GK +H + G + + SL Y + ++D +F + + V WT+
Sbjct: 222 LRQVKYGKAIHTHVIVRGFVTTLCVANSLATMYTECGEMQDGLCLFENMSERDVVSWTSL 281
Query: 190 IVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIG 249
IV R G + F +M ++ N TF+S+ AC + G Q+H N++ +G
Sbjct: 282 IVAYKRIGQEVKAVETFIKMRNSQVPPNEQTFASMFSACASLSRL-VWGEQLHCNVLSLG 340
Query: 250 LESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFL 309
L V ++ MY C L A +F+ + ++I SW+ ++ GY + G E K+
Sbjct: 341 LNDSLSVSNSMMKMYSTCGNLVSASVLFQGM-RCRDIISWSTIIGGYCQAGFGEEGFKYF 399
Query: 310 YLMKASGIQ 318
M+ SG +
Sbjct: 400 SWMRQSGTK 408
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 79/299 (26%), Positives = 134/299 (44%), Gaps = 12/299 (4%)
Query: 10 TDMYTCLI--KECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQ 67
+D YT I K C + + H+ R TL N L M+ CG++
Sbjct: 207 SDTYTFAIALKACAGLRQVKYGKAIHTHVIVR-GFVTTLCVANSLATMYTECGEMQDGLC 265
Query: 68 LFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKAC 127
LF+ M RD SW +IV Y + + + F +M + F + + AC
Sbjct: 266 LFENMSERDVVSWTSLIVAYKRIGQEVKAVETFIKMRNSQVPPNEQTFAS-----MFSAC 320
Query: 128 VCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWT 187
+ G+Q+H + LG + ++S++ S++ Y L A +F ++ + + W+
Sbjct: 321 ASLSRLVWGEQLHCNVLSLGLNDSLSVSNSMMKMYSTCGNLVSASVLFQGMRCRDIISWS 380
Query: 188 AKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDD-DGNCGRQMHANIV 246
I C+ G + F F M + K + +S+L G + +G GRQ+HA +
Sbjct: 381 TIIGGYCQAGFGEEGFKYFSWMRQSGTKPTDFALASLLSVSGNMAVIEG--GRQVHALAL 438
Query: 247 KIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEA 305
GLE + V+ L++MY KC +++A +F D+ +I S AM+ GY +G EA
Sbjct: 439 CFGLEQNSTVRSSLINMYSKCGSIKEASMIFGE-TDRDDIVSLTAMINGYAEHGKSKEA 496
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/258 (27%), Positives = 116/258 (44%), Gaps = 9/258 (3%)
Query: 40 VNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITL 99
+ + +L N ++ M+ +CG L +A LF M RD SW+ +I GY +E
Sbjct: 339 LGLNDSLSVSNSMMKMYSTCGNLVSASVLFQGMRCRDIISWSTIIGGYCQAGFGEEGFKY 398
Query: 100 FAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLI 159
F+ M R+ G F + +L +E G+QVH L G +N ++ SLI
Sbjct: 399 FSWM--RQSGTKPTDFA---LASLLSVSGNMAVIEGGRQVHALALCFGLEQNSTVRSSLI 453
Query: 160 NFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSY 219
N Y K +++A +F + R + V TA I G + + F++ + + +S
Sbjct: 454 NMYSKCGSIKEASMIFGETDRDDIVSLTAMINGYAEHGKSKEAIDLFEKSLKVGFRPDSV 513
Query: 220 TFSSVLKAC--GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVF 277
TF SVL AC G D G M + + E+ C +VD+ + L DAE++
Sbjct: 514 TFISVLTACTHSGQLDLGFHYFNMMQETYNM-RPAKEHYGC-MVDLLCRAGRLSDAEKMI 571
Query: 278 ELIVDKKNIASWNAMLVG 295
+ KK+ W +L+
Sbjct: 572 NEMSWKKDDVVWTTLLIA 589
>gi|449475590|ref|XP_004154496.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g09040, mitochondrial-like [Cucumis sativus]
Length = 974
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 89/301 (29%), Positives = 147/301 (48%), Gaps = 7/301 (2%)
Query: 38 KRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECI 97
+RV P + L ++ +V+ G+L AR+LF ++P + +W VMI G+ +E I
Sbjct: 235 QRVGHAPDQITLVTVVNAYVALGRLADARKLFTQIPNPNVVAWNVMISGHAKRGFAEEAI 294
Query: 98 TLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGS 157
+ F E+ +K G L + VL A + G VH K G N+ + +
Sbjct: 295 SFFLEL--KKTG---LKATRSSLGSVLSAIASLSMLNYGSMVHAQATKEGLDDNVYVGSA 349
Query: 158 LINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKN 217
L+N Y K ++ A VF+ L N V+W A + + G +V F M R + +
Sbjct: 350 LVNMYAKCSKMDAAKQVFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFFSCMKRHGPQPD 409
Query: 218 SYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVF 277
+TF+S+ AC + N G Q+H ++K S+ +V LVDMY K L++A + F
Sbjct: 410 EFTFTSIFSACASLHYL-NFGGQLHTVMIKNKFASNLFVANALVDMYAKSGALKEARKQF 468
Query: 278 ELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISAS 337
EL+ N+ SWNA++VGY++ EA M ++G+ E + + AC+++
Sbjct: 469 ELMKIHDNV-SWNAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACANVQEL 527
Query: 338 K 338
K
Sbjct: 528 K 528
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 88/288 (30%), Positives = 143/288 (49%), Gaps = 15/288 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+ L+ M+V CG + AR +F MP R+ S +I GY + +E I LF E+
Sbjct: 550 SSLIDMYVKCGVVLAARDVFYSMPSRNVVSVNALIAGYT-MGHLEEAIHLFQEI------ 602
Query: 110 HMLLVFPAWIIVC-VLKACVCTMNMELGKQVHGLLFKLG---SSRNISLTGSLINFYGKF 165
M+ + P + +L C + LG+Q+HG + K G SS + + SL+ Y
Sbjct: 603 QMVGLKPTEVTFAGLLDGCDGAFMLNLGRQIHGQVMKWGFLSSSEMVCV--SLLCLYMNS 660
Query: 166 RCLEDADFVFSQLK-RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
+ D++ +FS+L+ VVWTA I ++ H + ++ M + I + F+SV
Sbjct: 661 QRFVDSETLFSELQYPKGLVVWTALISGYAQQNHHEKALQFYQHMRSDNILPDQAAFASV 720
Query: 225 LKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
L+AC G+ N G+++H+ I G DE L+DMY KC ++ + +VF + +
Sbjct: 721 LRACAGMSSLQN-GQEIHSLIFHTGFNMDEVTCSSLIDMYAKCGDVKGSLQVFREMPRRN 779
Query: 285 NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
N+ SWN+M+VG +NG EA + M+ I E + ACS
Sbjct: 780 NVISWNSMIVGLAKNGYAEEALEIFKQMEQQSIIPDEVTFLGVLSACS 827
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/280 (26%), Positives = 131/280 (46%), Gaps = 8/280 (2%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ C ++D A+Q+F+ + R+ W M+ G+ QE + F+ M +
Sbjct: 350 LVNMYAKCSKMDAAKQVFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFFSCMKRHGPQPD 409
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
F + + AC + G Q+H ++ K + N+ + +L++ Y K L++A
Sbjct: 410 EFTFTS-----IFSACASLHYLNFGGQLHTVMIKNKFASNLFVANALVDMYAKSGALKEA 464
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
F +K H+ V W A IV +E + + F F+ M + + + +S++ AC V
Sbjct: 465 RKQFELMKIHDNVSWNAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACANV 524
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
+ G+Q H +VK+GL++ L+DMY KC ++ A VF + +N+ S NA
Sbjct: 525 QELKR-GQQCHCLLVKVGLDTSTCAGSSLIDMYVKCGVVLAARDVF-YSMPSRNVVSVNA 582
Query: 292 MLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
++ GY G EA ++ G++ E L C
Sbjct: 583 LIAGYTM-GHLEEAIHLFQEIQMVGLKPTEVTFAGLLDGC 621
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 82/293 (27%), Positives = 133/293 (45%), Gaps = 10/293 (3%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L N L+ M+ G L AR+ F+ M + D SW +IVGYV E +F M+
Sbjct: 445 LFVANALVDMYAKSGALKEARKQFELMKIHDNVSWNAIIVGYVQEEYNDEAFFMFRRMVS 504
Query: 106 RKKGHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
V P + + ++ AC ++ G+Q H LL K+G + SLI+ Y K
Sbjct: 505 NG------VLPDEVSLASIVSACANVQELKRGQQCHCLLVKVGLDTSTCAGSSLIDMYVK 558
Query: 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
+ A VF + N V A I GH + + F+E+ +K TF+ +
Sbjct: 559 CGVVLAARDVFYSMPSRNVVSVNALIAGYTM-GHLEEAIHLFQEIQMVGLKPTEVTFAGL 617
Query: 225 LKACGGVDDDGNCGRQMHANIVKIG-LESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
L C G N GRQ+H ++K G L S E V L+ +Y + D+E +F +
Sbjct: 618 LDGCDGAFML-NLGRQIHGQVMKWGFLSSSEMVCVSLLCLYMNSQRFVDSETLFSELQYP 676
Query: 284 KNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
K + W A++ GY + + +A +F M++ I ++ + AC+ +S+
Sbjct: 677 KGLVVWTALISGYAQQNHHEKALQFYQHMRSDNILPDQAAFASVLRACAGMSS 729
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 93/184 (50%), Gaps = 2/184 (1%)
Query: 133 MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192
+ K +H K+G L +++ Y K ++ A FS+L++ + W + +
Sbjct: 57 LSTAKVIHSKSLKIGVGLKGLLGNVIVDLYVKCGNVDFAQKAFSRLEKKDVFAWNSVLSM 116
Query: 193 NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLES 252
G F V F M ++ N +TF+ VL AC G+ D N GRQ+H + K G
Sbjct: 117 YLDHGLFATVVQSFVCMWNHEVRPNEFTFAMVLSACSGLQDV-NFGRQVHCGVFKTGFGF 175
Query: 253 DEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLM 312
+ Q GL+DMY KCR LRDA VF+ ++ + SW A++ GY+R+G +EA K M
Sbjct: 176 RSFCQGGLIDMYAKCRYLRDARLVFDGALNLDTV-SWTALIAGYVRDGFPMEAVKVFDRM 234
Query: 313 KASG 316
+ G
Sbjct: 235 QRVG 238
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 73/290 (25%), Positives = 118/290 (40%), Gaps = 44/290 (15%)
Query: 47 LFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR 106
L N ++ ++V CG +D A++ F + +D +W ++ Y+D + + F M
Sbjct: 77 LLGNVIVDLYVKCGNVDFAQKAFSRLEKKDVFAWNSVLSMYLDHGLFATVVQSFVCMWNH 136
Query: 107 KKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
+ V P + VL AC ++ G+QVH +FK G G LI+ Y K
Sbjct: 137 E------VRPNEFTFAMVLSACSGLQDVNFGRQVHCGVFKTGFGFRSFCQGGLIDMYAKC 190
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
R L DA VF +TV WTA I R+G + F M R
Sbjct: 191 RYLRDARLVFDGALNLDTVSWTALIAGYVRDGFPMEAVKVFDRMQR-------------- 236
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
+G D+ +V+ Y L DA ++F I + N
Sbjct: 237 ----------------------VGHAPDQITLVTVVNAYVALGRLADARKLFTQIPN-PN 273
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
+ +WN M+ G+ + G EA F +K +G++ S + + A +S+S
Sbjct: 274 VVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRSSLGSVLSAIASLS 323
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/261 (23%), Positives = 117/261 (44%), Gaps = 13/261 (4%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPL-RDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGH 110
LL ++++ + + LF E+ + W +I GY +++ + + M
Sbjct: 653 LLCLYMNSQRFVDSETLFSELQYPKGLVVWTALISGYAQQNHHEKALQFYQHMRSDN--- 709
Query: 111 MLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ P VL+AC +++ G+++H L+F G + + SLI+ Y K ++
Sbjct: 710 ---ILPDQAAFASVLRACAGMSSLQNGQEIHSLIFHTGFNMDEVTCSSLIDMYAKCGDVK 766
Query: 170 DADFVFSQLKRHNTVV-WTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+ VF ++ R N V+ W + IV + G+ + FK+M ++ I + TF VL AC
Sbjct: 767 GSLQVFREMPRRNNVISWNSMIVGLAKNGYAEEALEIFKQMEQQSIIPDEVTFLGVLSAC 826
Query: 229 --GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
G +G + N K+ D ++ C +VD+ G+ L +AE + K +
Sbjct: 827 SHAGRVSEGRKVFDLMVNNYKLQPRVD-HLGC-MVDILGRWGFLNEAEEFINKLGCKADP 884
Query: 287 ASWNAMLVGYIRNGLYVEATK 307
W+ +L ++G V +
Sbjct: 885 MLWSTLLGACRKHGDEVRGKR 905
Score = 38.9 bits (89), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
Query: 236 NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
+ + +H+ +KIG+ + +VD+Y KC + A++ F + +KK++ +WN++L
Sbjct: 58 STAKVIHSKSLKIGVGLKGLLGNVIVDLYVKCGNVDFAQKAFSRL-EKKDVFAWNSVLSM 116
Query: 296 YIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
Y+ +GL+ + M ++ E + ACS +
Sbjct: 117 YLDHGLFATVVQSFVCMWNHEVRPNEFTFAMVLSACSGL 155
>gi|302797737|ref|XP_002980629.1| hypothetical protein SELMODRAFT_51574 [Selaginella moellendorffii]
gi|300151635|gb|EFJ18280.1| hypothetical protein SELMODRAFT_51574 [Selaginella moellendorffii]
Length = 499
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 85/314 (27%), Positives = 152/314 (48%), Gaps = 11/314 (3%)
Query: 6 LPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTA 65
LP+ + L+ +KD + HI + + ++ L L+ M CG L A
Sbjct: 196 LPVLV-TFLALLNALAEEKDWDRGRWIHRHITE-MKLESQLSVAAALITMFGKCGDLKKA 253
Query: 66 RQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCVL 124
R++F + D + ++ + + ++ + LF M + V P ++ L
Sbjct: 254 RRVFRRIHQPDLEVYNALLAAHTENGEFWNALLLFRRMQEDG------VAPDRETVLAAL 307
Query: 125 KACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTV 184
AC+ +++E GK +H + ++I + +LI Y K LEDA+++F +++R + V
Sbjct: 308 GACIRPVDLEHGKGIHVSVINHDLEKDIDVANALIYMYSKCGSLEDAEWMFQRVERPSMV 367
Query: 185 VWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHAN 244
W + + G + + F++M E I S L+ACG + G GR +H
Sbjct: 368 SWRTLLAAYVKHGRNEEALSSFRKMLLEGISPGRSACVSALRACGRLGLPGQ-GRHIHLI 426
Query: 245 IVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVE 304
+ ++GLES V +V+MYGKC+ L DA RVFE I ++ N++SWN+++ Y+ G E
Sbjct: 427 VQELGLESHNRVVYAVVEMYGKCKCLEDARRVFEKI-EQPNLSSWNSIVAAYLECGCMEE 485
Query: 305 ATKFLYLMKASGIQ 318
A M+ G++
Sbjct: 486 ALGQFRRMQLEGVK 499
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 80/283 (28%), Positives = 138/283 (48%), Gaps = 11/283 (3%)
Query: 36 IRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQE 95
+ + ++ PT+ + ++ M+V CG +TA+ +F MP SW +I G+ + +E
Sbjct: 24 VSRGLDRDPTIA--DHVVYMYVKCGSFETAKSVFQRMPDPGILSWNRIIAGHAQRHELEE 81
Query: 96 CITLFAEMMKRKKGHMLLVFPAWII-VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISL 154
I F +++ + V P I V L AC + + +GKQ+H + G ++ +
Sbjct: 82 AIATFQKLLLQG------VTPGRITYVAALGACCGSRFLPVGKQIHSQIVAAGWDSSLIV 135
Query: 155 TGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERI 214
+ +LI+ Y L A VF +KR + V WTA + + GH + F ++ M E
Sbjct: 136 STALIDMYAACGSLRGAIRVFQGMKRRDVVAWTAIVAAFAQYGHLEKAFQTYRGMLLEGF 195
Query: 215 KKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAE 274
TF ++L A + D + GR +H +I ++ LES V L+ M+GKC L+ A
Sbjct: 196 LPVLVTFLALLNALAE-EKDWDRGRWIHRHITEMKLESQLSVAAALITMFGKCGDLKKAR 254
Query: 275 RVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGI 317
RVF I + ++ +NA+L + NG + A M+ G+
Sbjct: 255 RVFRRI-HQPDLEVYNALLAAHTENGEFWNALLLFRRMQEDGV 296
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 71/292 (24%), Positives = 134/292 (45%), Gaps = 9/292 (3%)
Query: 45 TLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMM 104
+L+ L+ M+ +CG L A ++F M RD +W ++ + ++ + M+
Sbjct: 132 SLIVSTALIDMYAACGSLRGAIRVFQGMKRRDVVAWTAIVAAFAQYGHLEKAFQTYRGML 191
Query: 105 KRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
+L+ F + +L A + + G+ +H + ++ +S+ +LI +GK
Sbjct: 192 LEGFLPVLVTF-----LALLNALAEEKDWDRGRWIHRHITEMKLESQLSVAAALITMFGK 246
Query: 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
L+ A VF ++ + + V+ A + + G F F+ M + + + T +
Sbjct: 247 CGDLKKARRVFRRIHQPDLEVYNALLAAHTENGEFWNALLLFRRMQEDGVAPDRETVLAA 306
Query: 225 LKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
L AC D + G+ +H +++ LE D V L+ MY KC L DAE +F+ V++
Sbjct: 307 LGACIRPVDLEH-GKGIHVSVINHDLEKDIDVANALIYMYSKCGSLEDAEWMFQR-VERP 364
Query: 285 NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESL-INDLRIACSSIS 335
++ SW +L Y+++G EA M GI S ++ LR AC +
Sbjct: 365 SMVSWRTLLAAYVKHGRNEEALSSFRKMLLEGISPGRSACVSALR-ACGRLG 415
Score = 37.4 bits (85), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 234 DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
D G +H IV GL+ D + +V MY KC A+ VF+ + D I SWN ++
Sbjct: 12 DLQAGILIHDRIVSRGLDRDPTIADHVVYMYVKCGSFETAKSVFQRMPD-PGILSWNRII 70
Query: 294 VGYIRNGLYVEA 305
G+ + EA
Sbjct: 71 AGHAQRHELEEA 82
>gi|255586231|ref|XP_002533770.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526307|gb|EEF28615.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 617
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 86/294 (29%), Positives = 140/294 (47%), Gaps = 10/294 (3%)
Query: 26 SAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIV 85
S A E L ++ +P + +L V G ++ RQ+FD M +SW M+
Sbjct: 332 SGKAIEYLQRMQS-CGFEPDEVTYINMLTACVRSGDIEIGRQIFDCMACPGVSSWNGMLS 390
Query: 86 GYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLF 144
GY + ++ E I LF EM + V P + +L +C +E GKQVH +
Sbjct: 391 GYFQIENHNEAIKLFREMQFQN------VKPDRTTLAIILSSCAGMELLEAGKQVHAISQ 444
Query: 145 KLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFN 204
K +I + LI Y K ++ AD +F ++ + +TV W + I ++
Sbjct: 445 KAAFHEDIYVASGLIGMYSKCGKMDIADCIFKKISKQDTVCWNSMIAGLSLNSLDNEALA 504
Query: 205 DFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMY 264
F++M + + ++++++L C + + G+Q+HA I K G +D YV LVDMY
Sbjct: 505 FFQQMRQSGMSPTQFSYATILSCCAKLSSLIH-GKQIHAQIAKEGFVNDVYVGSALVDMY 563
Query: 265 GKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
KC + +A + F+ I+ KN +WN M+ GY +NG EA M S IQ
Sbjct: 564 CKCGEVGEARQFFD-IMSSKNTVTWNEMIHGYAQNGHGHEAVCLYRDMIESAIQ 616
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 87/329 (26%), Positives = 153/329 (46%), Gaps = 37/329 (11%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R+ + LNRL+ + C + A LF +MP ++ SW ++ Y + Q
Sbjct: 34 RIGLSTDTFLLNRLIEFYFKCKNMGYAHNLFHQMPHKNIYSWNAILTEYCKAGNLQNAHR 93
Query: 99 LFAEMMKRK------------KGHML--------------LVFPAWIIVCVLKACVCTMN 132
LF+EM +R +G + L+ + + +L AC +N
Sbjct: 94 LFSEMPERNIVSWNNLISALVRGRLEQQALDVYNEMIWEGLMPTHFTLASILSACGTLLN 153
Query: 133 MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192
ME G++ H L+ K+G N+ ++ +L++ Y K + DA +F +++ N V +TA +
Sbjct: 154 MESGRKCHTLIVKIGLDNNVYVSNALLSVYSKCGLVRDAVRLFEEMQEPNEVTYTAMMSG 213
Query: 193 NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--GGVDD----DGN----CGRQMH 242
+ + F+ M R+ I +S + SSVL C GG + DG+ G+ H
Sbjct: 214 FTQTDRVVEALEMFRLMCRQGICIDSVSLSSVLGVCTKGGCGESDQSDGSLRNALGKLAH 273
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
+K+G ESD ++ L+DMY K + AE VF + + ++ SWN M+ GY +
Sbjct: 274 GLAIKLGFESDLHLCNSLLDMYAKDGDMDSAEEVFANL-PEMSVVSWNVMIAGYGQKCKS 332
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIAC 331
+A ++L M++ G + E ++ AC
Sbjct: 333 GKAIEYLQRMQSCGFEPDEVTYINMLTAC 361
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 121/260 (46%), Gaps = 41/260 (15%)
Query: 104 MKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYG 163
M+RK H L +L++C+ GK +H +F++G S + L LI FY
Sbjct: 1 MERKATHYL--------ANLLQSCIDKKAHLSGKLLHARIFRIGLSTDTFLLNRLIEFYF 52
Query: 164 KFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHF---HQVFND--------------- 205
K + + A +F Q+ N W A + C+ G+ H++F++
Sbjct: 53 KCKNMGYAHNLFHQMPHKNIYSWNAILTEYCKAGNLQNAHRLFSEMPERNIVSWNNLISA 112
Query: 206 -------------FKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLES 252
+ EM E + +T +S+L ACG + + GR+ H IVKIGL++
Sbjct: 113 LVRGRLEQQALDVYNEMIWEGLMPTHFTLASILSACGTLLN-MESGRKCHTLIVKIGLDN 171
Query: 253 DEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLM 312
+ YV L+ +Y KC L+RDA R+FE + + N ++ AM+ G+ + VEA + LM
Sbjct: 172 NVYVSNALLSVYSKCGLVRDAVRLFEEM-QEPNEVTYTAMMSGFTQTDRVVEALEMFRLM 230
Query: 313 KASGIQIQESLINDLRIACS 332
GI I ++ + C+
Sbjct: 231 CRQGICIDSVSLSSVLGVCT 250
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 74/298 (24%), Positives = 127/298 (42%), Gaps = 42/298 (14%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
++ + L N LL M+ G +D+A ++F +P SW VMI GY + I
Sbjct: 278 KLGFESDLHLCNSLLDMYAKDGDMDSAEEVFANLPEMSVVSWNVMIAGYGQKCKSGKAIE 337
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
M + + + +L ACV + ++E+G+Q+ + G S S G L
Sbjct: 338 YLQRMQSCGFEPDEVTY-----INMLTACVRSGDIEIGRQIFDCMACPGVS---SWNGML 389
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
++ Q++ HN + F+EM + +K +
Sbjct: 390 SGYF--------------QIENHNEAI------------------KLFREMQFQNVKPDR 417
Query: 219 YTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE 278
T + +L +C G++ G+Q+HA K D YV GL+ MY KC + A+ +F+
Sbjct: 418 TTLAIILSSCAGMELL-EAGKQVHAISQKAAFHEDIYVASGLIGMYSKCGKMDIADCIFK 476
Query: 279 LIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
I K++ WN+M+ G N L EA F M+ SG+ + + C+ +S+
Sbjct: 477 KI-SKQDTVCWNSMIAGLSLNSLDNEALAFFQQMRQSGMSPTQFSYATILSCCAKLSS 533
>gi|255569195|ref|XP_002525566.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535145|gb|EEF36825.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 563
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 86/282 (30%), Positives = 141/282 (50%), Gaps = 9/282 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ C L TAR +FD M R +W MI G V+ D +E LF +MM
Sbjct: 284 LVDMYSKCDSLGTARVIFDGMGSRTVVTWNSMIAGCVENGDPEEAKVLFKKMMDEG---- 339
Query: 112 LLVFPAWIIVC-VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
+ P + V VL AC + ++E GK VH L+ L N+S+ SLI+ Y K + ++
Sbjct: 340 --LQPTDVTVMEVLHACADSGDLEQGKFVHKLVEDLKLDSNVSVMNSLISMYSKCKQVDF 397
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
A +F L+ V W A I+ + G ++ N F EM + IK +S+T SV+ A
Sbjct: 398 AANLFENLQNRTLVSWNAMILGYAQNGRLNEALNFFCEMQSQNIKPDSFTMVSVIPALAE 457
Query: 231 VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWN 290
+ + +H +++ L+ +V LVDMY KC + A ++F ++ ++++ +WN
Sbjct: 458 LSIPRQ-AKWIHGLVIRRLLDDTVFVMTALVDMYAKCGAIHTARKLFNMM-SERHVITWN 515
Query: 291 AMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+M+ Y +GL EA + M+ I+ + + ACS
Sbjct: 516 SMIDAYGTHGLGKEAVQLFVEMQKGTIKPNDVTFLCVLSACS 557
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/275 (26%), Positives = 127/275 (46%), Gaps = 11/275 (4%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L + ++ ++ C + A ++FD M RD W +I GY + + L ++ +
Sbjct: 177 LFAMTAVVSLYCKCRVIGDAYKMFDRMTERDLVCWNTIISGYAQNGLTKVALELVPKIFE 236
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
+GH + IV VL A ++ GK +H + + G ++++ +L++ Y K
Sbjct: 237 --EGHRP---DSVTIVSVLPAVADIRSLRFGKAIHAYVIRAGFDWLVNISTALVDMYSKC 291
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
L A +F + V W + I G + FK+M E ++ T VL
Sbjct: 292 DSLGTARVIFDGMGSRTVVTWNSMIAGCVENGDPEEAKVLFKKMMDEGLQPTDVTVMEVL 351
Query: 226 KACGGVDDDGNC--GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
AC D G+ G+ +H + + L+S+ V L+ MY KC+ + A +FE +
Sbjct: 352 HACA---DSGDLEQGKFVHKLVEDLKLDSNVSVMNSLISMYSKCKQVDFAANLFENL-QN 407
Query: 284 KNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
+ + SWNAM++GY +NG EA F M++ I+
Sbjct: 408 RTLVSWNAMILGYAQNGRLNEALNFFCEMQSQNIK 442
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/320 (22%), Positives = 138/320 (43%), Gaps = 16/320 (5%)
Query: 22 FQKDSAGAFELLNHIRKRVNIKPTL---------LFLNRLLLMHVSCGQLDTARQLFDEM 72
++ +A EL +++ I P++ LF +L+ + + G L A ++F+ +
Sbjct: 43 YKHPTAVLLELCTSVKELHQIIPSIIKNGFYSEELFQTKLISLFCNYGSLTEAARVFEPI 102
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN 132
+ + M+ G+ + + F M ++ F +L C +
Sbjct: 103 ENKLEALYHTMLKGFAKNSSLDSALLFFCRMKHDNVRPVVYNF-----TYLLTLCGDNFD 157
Query: 133 MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192
+ GK++HG L G S N+ ++++ Y K R + DA +F ++ + V W I
Sbjct: 158 LRRGKEIHGQLITSGFSWNLFAMTAVVSLYCKCRVIGDAYKMFDRMTERDLVCWNTIISG 217
Query: 193 NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLES 252
+ G ++ E + +S T SVL A + G+ +HA +++ G +
Sbjct: 218 YAQNGLTKVALELVPKIFEEGHRPDSVTIVSVLPAVADI-RSLRFGKAIHAYVIRAGFDW 276
Query: 253 DEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLM 312
+ LVDMY KC L A +F+ + + + +WN+M+ G + NG EA M
Sbjct: 277 LVNISTALVDMYSKCDSLGTARVIFDGM-GSRTVVTWNSMIAGCVENGDPEEAKVLFKKM 335
Query: 313 KASGIQIQESLINDLRIACS 332
G+Q + + ++ AC+
Sbjct: 336 MDEGLQPTDVTVMEVLHACA 355
Score = 45.1 bits (105), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 45 TLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMM 104
T+ + L+ M+ CG + TAR+LF+ M R +W MI Y +E + LF EM
Sbjct: 479 TVFVMTALVDMYAKCGAIHTARKLFNMMSERHVITWNSMIDAYGTHGLGKEAVQLFVEMQ 538
Query: 105 KRKKGHMLLVFPAWIIVCVLKAC 127
K + F +CVL AC
Sbjct: 539 KGTIKPNDVTF-----LCVLSAC 556
>gi|302800114|ref|XP_002981815.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
gi|300150647|gb|EFJ17297.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
Length = 637
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 78/288 (27%), Positives = 132/288 (45%), Gaps = 9/288 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
+L + G + R+ FDEMP+ D SW +I Y+ D+ C F M+ +
Sbjct: 1 MLSAYSQIGNIPAVRKAFDEMPVADIVSWNALIAAYIGNRDFDRCWLFFRGMLLQG---- 56
Query: 112 LLVFPAWIIVCV-LKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
+ P + + + L AC + +G+ + + G + +L++ YGK D
Sbjct: 57 --INPGEVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSMYGKLGHCTD 114
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
A VF ++ + V W+A + R GH + F++M + + N T S L AC
Sbjct: 115 AASVFLRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACAS 174
Query: 231 VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWN 290
+ D G MH + G++S V LV++YGKC + A F IV+ KN+ +W+
Sbjct: 175 LGDL-RSGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAVEAFGQIVE-KNVVAWS 232
Query: 291 AMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASK 338
A+ Y RN +A + L+ M G+ + + AC++I+A K
Sbjct: 233 AISAAYARNDRNRDAIRVLHRMDLEGLVPNSTTFVSVLDACAAIAALK 280
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 79/284 (27%), Positives = 123/284 (43%), Gaps = 11/284 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ G A +F M RD +W+ M+ Y +E + LF +M +
Sbjct: 102 LVSMYGKLGHCTDAASVFLRMSHRDVVAWSAMVAAYARNGHPREALGLFRQM------DL 155
Query: 112 LLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
V P + +V L AC ++ G +H + G + + +L+N YGK +E
Sbjct: 156 DGVAPNKVTLVSGLDACASLGDLRSGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEA 215
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
A F Q+ N V W+A R M E + NS TF SVL AC
Sbjct: 216 AVEAFGQIVEKNVVAWSAISAAYARNDRNRDAIRVLHRMDLEGLVPNSTTFVSVLDACAA 275
Query: 231 VDDDGNCGRQMH--ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
+ GR++H ++ GLESD YV LV+MY KC L A +F+ I ++
Sbjct: 276 IAALKQ-GRRIHERTQVLGGGLESDVYVLTALVNMYSKCGNLALAGDMFDKIA-HLDLVL 333
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
WN+++ ++G +A + M+ G+Q + ACS
Sbjct: 334 WNSLIATNAQHGQTEKALELFERMRLEGLQPTIITFTSVLFACS 377
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 58/258 (22%), Positives = 117/258 (45%), Gaps = 13/258 (5%)
Query: 41 NIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLF 100
I+ ++ L+ ++ CG+++ A + F ++ ++ +W+ + Y ++ I +
Sbjct: 192 GIQSGVVVGTALVNLYGKCGRIEAAVEAFGQIVEKNVVAWSAISAAYARNDRNRDAIRVL 251
Query: 101 AEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSS--RNISLTGSL 158
M LV + V VL AC ++ G+++H LG ++ + +L
Sbjct: 252 HRMDLEG-----LVPNSTTFVSVLDACAAIAALKQGRRIHERTQVLGGGLESDVYVLTAL 306
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
+N Y K L A +F ++ + V+W + I N + G + F+ M E ++
Sbjct: 307 VNMYSKCGNLALAGDMFDKIAHLDLVLWNSLIATNAQHGQTEKALELFERMRLEGLQPTI 366
Query: 219 YTFSSVLKAC--GGVDDDGNCGRQMHANIVKIGLESD-EYVQCGLVDMYGKCRLLRDAER 275
TF+SVL AC G+ D G + + I G+ + E+ C +VD+ G+ + D+E
Sbjct: 367 ITFTSVLFACSHAGMLDQGR--KHFVSFIGDHGIFPEAEHFGC-MVDLLGRAGWIVDSED 423
Query: 276 VFELIVDKKNIASWNAML 293
+ + + + +W A L
Sbjct: 424 LLLHMPFEPHPVAWMAFL 441
>gi|222625199|gb|EEE59331.1| hypothetical protein OsJ_11408 [Oryza sativa Japonica Group]
Length = 691
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 81/283 (28%), Positives = 139/283 (49%), Gaps = 9/283 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL M+ CG + AR F+ +P D + MI Y ++ LF +M+
Sbjct: 304 LLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSS---- 359
Query: 112 LLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
V P + + VL+AC + ++ GKQ+H K+G ++ + +L++FY K ++
Sbjct: 360 --VLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDS 417
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
+ +FS L+ N V W +V + G + + F EM ++ T+SSVL+AC
Sbjct: 418 SLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACAS 477
Query: 231 VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWN 290
+ G Q+H +I K +D + L+D Y KC +RDA +VF+ +++ ++I SWN
Sbjct: 478 TASIRHAG-QIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLME-RDIISWN 535
Query: 291 AMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSS 333
A++ GY +G +A + M S ++ + L CSS
Sbjct: 536 AIISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCSS 578
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 95/332 (28%), Positives = 165/332 (49%), Gaps = 20/332 (6%)
Query: 11 DMYTCL--IKECTFQKDSAGAFELLNHIRKRVNIKPTLLF-LNRLLLMHVSCGQLDTARQ 67
D + C ++ C + D+ G + H+ +R + LF N LL M+ G L +AR+
Sbjct: 58 DSFACARQLQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARR 117
Query: 68 LFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKAC 127
LFD MP R+ S+ ++ + D++ LF + R +GH + F ++ +LK
Sbjct: 118 LFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRL--RWEGHEVNQF---VLTTMLKLA 172
Query: 128 VCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWT 187
+ L VH +KLG N + LI+ Y + DA+ VF+ + R + VVWT
Sbjct: 173 IAMDAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWT 232
Query: 188 AKIV----NNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHA 243
A + N+C E F +VF+ + G K N + +SVLKA + G+ +H
Sbjct: 233 AMVSCYSENDCPENAF-RVFSKMRVSG---CKPNPFALTSVLKAAVCLPSV-VLGKGIHG 287
Query: 244 NIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYV 303
+K +++ +V L+DMY KC ++DA FE+I ++ + M+ Y ++
Sbjct: 288 CAIKTLNDTEPHVGGALLDMYAKCGDIKDARLAFEMI-PYDDVILLSFMISRYAQSNQNE 346
Query: 304 EATK-FLYLMKASGIQIQESLINDLRIACSSI 334
+A + FL LM++S + + SL + L+ AC+++
Sbjct: 347 QAFELFLRLMRSSVLPNEYSLSSVLQ-ACTNM 377
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 75/278 (26%), Positives = 135/278 (48%), Gaps = 7/278 (2%)
Query: 59 CGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAW 118
C + A +F+ + +D W M+ Y + + +F++M R G F
Sbjct: 210 CSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRVFSKM--RVSGCKPNPFA-- 265
Query: 119 IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL 178
+ VLKA VC ++ LGK +HG K + + G+L++ Y K ++DA F +
Sbjct: 266 -LTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARLAFEMI 324
Query: 179 KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCG 238
+ ++ + I + Q F F + R + N Y+ SSVL+AC + + G
Sbjct: 325 PYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQL-DFG 383
Query: 239 RQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIR 298
+Q+H + +KIG ESD +V L+D Y KC + + ++F + D + SWN ++VG+ +
Sbjct: 384 KQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEV-SWNTIVVGFSQ 442
Query: 299 NGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+GL EA M+A+ + + + + AC+S ++
Sbjct: 443 SGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTAS 480
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/266 (23%), Positives = 114/266 (42%), Gaps = 12/266 (4%)
Query: 31 ELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFN--SWAVMIVGYV 88
++ NH K + + L N L+ + C +D++ ++F LRD N SW ++VG+
Sbjct: 385 QIHNHAIK-IGHESDLFVGNALMDFYAKCNDMDSSLKIFSS--LRDANEVSWNTIVVGFS 441
Query: 89 DVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGS 148
+E +++F EM + + + + VL+AC T ++ Q+H + K
Sbjct: 442 QSGLGEEALSVFCEMQAAQMPCTQVTYSS-----VLRACASTASIRHAGQIHCSIEKSTF 496
Query: 149 SRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKE 208
+ + + SLI+ Y K + DA VF L + + W A I G F
Sbjct: 497 NNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFDR 556
Query: 209 MGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLE-SDEYVQCGLVDMYGKC 267
M + ++ N TF ++L C + + + G++ S E+ C +V + G+
Sbjct: 557 MNKSNVESNDITFVALLSVCSSTGLVNHGLSLFDSMRIDHGIKPSMEHYTC-IVRLLGRA 615
Query: 268 RLLRDAERVFELIVDKKNIASWNAML 293
L DA + I + W A+L
Sbjct: 616 GRLNDALQFIGDIPSAPSAMVWRALL 641
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 1/117 (0%)
Query: 6 LPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTA 65
+P T Y+ +++ C A ++ I K T++ N L+ + CG + A
Sbjct: 461 MPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIG-NSLIDTYAKCGYIRDA 519
Query: 66 RQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVC 122
++F + RD SW +I GY + + LF M K + F A + VC
Sbjct: 520 LKVFQHLMERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVC 576
>gi|449443954|ref|XP_004139740.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g09040, mitochondrial-like [Cucumis sativus]
Length = 1441
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 89/301 (29%), Positives = 147/301 (48%), Gaps = 7/301 (2%)
Query: 38 KRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECI 97
+RV P + L ++ +V+ G+L AR+LF ++P + +W VMI G+ +E I
Sbjct: 235 QRVGHAPDQITLVTVVNAYVALGRLADARKLFTQIPNPNVVAWNVMISGHAKRGFAEEAI 294
Query: 98 TLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGS 157
+ F E+ +K G L + VL A + G VH K G N+ + +
Sbjct: 295 SFFLEL--KKTG---LKATRSSLGSVLSAIASLSMLNYGSMVHAQATKEGLDDNVYVGSA 349
Query: 158 LINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKN 217
L+N Y K ++ A VF+ L N V+W A + + G +V F M R + +
Sbjct: 350 LVNMYAKCSKMDAAKQVFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFFSCMKRHGPQPD 409
Query: 218 SYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVF 277
+TF+S+ AC + N G Q+H ++K S+ +V LVDMY K L++A + F
Sbjct: 410 EFTFTSIFSACASLHYL-NFGGQLHTVMIKNKFASNLFVANALVDMYAKSGALKEARKQF 468
Query: 278 ELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISAS 337
EL+ N+ SWNA++VGY++ EA M ++G+ E + + AC+++
Sbjct: 469 ELMKIHDNV-SWNAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACANVQEL 527
Query: 338 K 338
K
Sbjct: 528 K 528
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 88/288 (30%), Positives = 143/288 (49%), Gaps = 15/288 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+ L+ M+V CG + AR +F MP R+ S +I GY + +E I LF E+
Sbjct: 550 SSLIDMYVKCGVVLAARDVFYSMPSRNVVSVNALIAGYT-MGHLEEAIHLFQEI------ 602
Query: 110 HMLLVFPAWIIVC-VLKACVCTMNMELGKQVHGLLFKLG---SSRNISLTGSLINFYGKF 165
M+ + P + +L C + LG+Q+HG + K G SS + + SL+ Y
Sbjct: 603 QMVGLKPTEVTFAGLLDGCDGAFMLNLGRQIHGQVMKWGFLSSSEMVCV--SLLCLYMNS 660
Query: 166 RCLEDADFVFSQLK-RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
+ D++ +FS+L+ VVWTA I ++ H + ++ M + I + F+SV
Sbjct: 661 QRFVDSETLFSELQYPKGLVVWTALISGYAQQNHHEKALQFYQHMRSDNILPDQAAFASV 720
Query: 225 LKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
L+AC G+ N G+++H+ I G DE L+DMY KC ++ + +VF + +
Sbjct: 721 LRACAGMSSLQN-GQEIHSLIFHTGFNMDEVTCSSLIDMYAKCGDVKGSLQVFREMPRRN 779
Query: 285 NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
N+ SWN+M+VG +NG EA + M+ I E + ACS
Sbjct: 780 NVISWNSMIVGLAKNGYAEEALEIFKQMEQQSIIPDEVTFLGVLSACS 827
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 73/280 (26%), Positives = 130/280 (46%), Gaps = 8/280 (2%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ C ++D A+Q+F+ + R+ W M+ G+ QE + F+ M +
Sbjct: 350 LVNMYAKCSKMDAAKQVFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFFSCMKRHGPQPD 409
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
F + AC + G Q+H ++ K + N+ + +L++ Y K L++A
Sbjct: 410 EFTF-----TSIFSACASLHYLNFGGQLHTVMIKNKFASNLFVANALVDMYAKSGALKEA 464
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
F +K H+ V W A IV +E + + F F+ M + + + +S++ AC V
Sbjct: 465 RKQFELMKIHDNVSWNAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACANV 524
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
+ G+Q H +VK+GL++ L+DMY KC ++ A VF + +N+ S NA
Sbjct: 525 QELKR-GQQCHCLLVKVGLDTSTCAGSSLIDMYVKCGVVLAARDVF-YSMPSRNVVSVNA 582
Query: 292 MLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
++ GY G EA ++ G++ E L C
Sbjct: 583 LIAGYTM-GHLEEAIHLFQEIQMVGLKPTEVTFAGLLDGC 621
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 83/297 (27%), Positives = 134/297 (45%), Gaps = 18/297 (6%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L N L+ M+ G L AR+ F+ M + D SW +IVGYV E +F M+
Sbjct: 445 LFVANALVDMYAKSGALKEARKQFELMKIHDNVSWNAIIVGYVQEEYNDEAFFMFRRMVS 504
Query: 106 RKKGHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
V P + + ++ AC ++ G+Q H LL K+G + SLI+ Y K
Sbjct: 505 NG------VLPDEVSLASIVSACANVQELKRGQQCHCLLVKVGLDTSTCAGSSLIDMYVK 558
Query: 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
+ A VF + N V A I GH + + F+E+ +K TF+ +
Sbjct: 559 CGVVLAARDVFYSMPSRNVVSVNALIAGYTM-GHLEEAIHLFQEIQMVGLKPTEVTFAGL 617
Query: 225 LKACGGVDDDG----NCGRQMHANIVKIG-LESDEYVQCGLVDMYGKCRLLRDAERVFEL 279
L C DG N GRQ+H ++K G L S E V L+ +Y + D+E +F
Sbjct: 618 LDGC-----DGAFMLNLGRQIHGQVMKWGFLSSSEMVCVSLLCLYMNSQRFVDSETLFSE 672
Query: 280 IVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+ K + W A++ GY + + +A +F M++ I ++ + AC+ +S+
Sbjct: 673 LQYPKGLVVWTALISGYAQQNHHEKALQFYQHMRSDNILPDQAAFASVLRACAGMSS 729
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 93/184 (50%), Gaps = 2/184 (1%)
Query: 133 MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192
+ K +H K+G L +++ Y K ++ A FS+L++ + W + +
Sbjct: 57 LSTAKVIHSKSLKIGVGLKGLLGNVIVDLYVKCGNVDFAQKAFSRLEKKDVFAWNSVLSM 116
Query: 193 NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLES 252
G F V F M ++ N +TF+ VL AC G+ D N GRQ+H + K G
Sbjct: 117 YLDHGLFATVVQSFVCMWNHEVRPNEFTFAMVLSACSGLQDV-NFGRQVHCGVFKTGFGF 175
Query: 253 DEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLM 312
+ Q GL+DMY KCR LRDA VF+ ++ + SW A++ GY+R+G +EA K M
Sbjct: 176 RSFCQGGLIDMYAKCRYLRDARLVFDGALNLDTV-SWTALIAGYVRDGFPMEAVKVFDRM 234
Query: 313 KASG 316
+ G
Sbjct: 235 QRVG 238
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 73/290 (25%), Positives = 118/290 (40%), Gaps = 44/290 (15%)
Query: 47 LFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR 106
L N ++ ++V CG +D A++ F + +D +W ++ Y+D + + F M
Sbjct: 77 LLGNVIVDLYVKCGNVDFAQKAFSRLEKKDVFAWNSVLSMYLDHGLFATVVQSFVCMWNH 136
Query: 107 KKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
+ V P + VL AC ++ G+QVH +FK G G LI+ Y K
Sbjct: 137 E------VRPNEFTFAMVLSACSGLQDVNFGRQVHCGVFKTGFGFRSFCQGGLIDMYAKC 190
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
R L DA VF +TV WTA I R+G + F M R
Sbjct: 191 RYLRDARLVFDGALNLDTVSWTALIAGYVRDGFPMEAVKVFDRMQR-------------- 236
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
+G D+ +V+ Y L DA ++F I + N
Sbjct: 237 ----------------------VGHAPDQITLVTVVNAYVALGRLADARKLFTQIPN-PN 273
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
+ +WN M+ G+ + G EA F +K +G++ S + + A +S+S
Sbjct: 274 VVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRSSLGSVLSAIASLS 323
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 113/247 (45%), Gaps = 13/247 (5%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPL-RDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGH 110
LL ++++ + + LF E+ + W +I GY +++ + + M
Sbjct: 653 LLCLYMNSQRFVDSETLFSELQYPKGLVVWTALISGYAQQNHHEKALQFYQHMRSDN--- 709
Query: 111 MLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ P VL+AC +++ G+++H L+F G + + SLI+ Y K ++
Sbjct: 710 ---ILPDQAAFASVLRACAGMSSLQNGQEIHSLIFHTGFNMDEVTCSSLIDMYAKCGDVK 766
Query: 170 DADFVFSQLKRHNTVV-WTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+ VF ++ R N V+ W + IV + G+ + FK+M ++ I + TF VL AC
Sbjct: 767 GSLQVFREMPRRNNVISWNSMIVGLAKNGYAEEALEIFKQMEQQSIIPDEVTFLGVLSAC 826
Query: 229 --GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
G +G + N K+ L +++ C +VD+ G+ L +AE + K +
Sbjct: 827 SHAGRVSEGRKVFDLMVNNYKL-LPRVDHLGC-MVDILGRWGFLNEAEEFINKLGCKADP 884
Query: 287 ASWNAML 293
W+ +L
Sbjct: 885 MLWSTLL 891
Score = 38.9 bits (89), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
Query: 236 NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
+ + +H+ +KIG+ + +VD+Y KC + A++ F + +KK++ +WN++L
Sbjct: 58 STAKVIHSKSLKIGVGLKGLLGNVIVDLYVKCGNVDFAQKAFSRL-EKKDVFAWNSVLSM 116
Query: 296 YIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
Y+ +GL+ + M ++ E + ACS +
Sbjct: 117 YLDHGLFATVVQSFVCMWNHEVRPNEFTFAMVLSACSGL 155
>gi|115453719|ref|NP_001050460.1| Os03g0441400 [Oryza sativa Japonica Group]
gi|108709057|gb|ABF96852.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113548931|dbj|BAF12374.1| Os03g0441400 [Oryza sativa Japonica Group]
gi|215767379|dbj|BAG99607.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 837
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 81/283 (28%), Positives = 139/283 (49%), Gaps = 9/283 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL M+ CG + AR F+ +P D + MI Y ++ LF +M+
Sbjct: 304 LLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSS---- 359
Query: 112 LLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
V P + + VL+AC + ++ GKQ+H K+G ++ + +L++FY K ++
Sbjct: 360 --VLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDS 417
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
+ +FS L+ N V W +V + G + + F EM ++ T+SSVL+AC
Sbjct: 418 SLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACAS 477
Query: 231 VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWN 290
+ G Q+H +I K +D + L+D Y KC +RDA +VF+ +++ ++I SWN
Sbjct: 478 TASIRHAG-QIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLME-RDIISWN 535
Query: 291 AMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSS 333
A++ GY +G +A + M S ++ + L CSS
Sbjct: 536 AIISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCSS 578
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 95/332 (28%), Positives = 165/332 (49%), Gaps = 20/332 (6%)
Query: 11 DMYTCL--IKECTFQKDSAGAFELLNHIRKRVNIKPTLLF-LNRLLLMHVSCGQLDTARQ 67
D + C ++ C + D+ G + H+ +R + LF N LL M+ G L +AR+
Sbjct: 58 DSFACARQLQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARR 117
Query: 68 LFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKAC 127
LFD MP R+ S+ ++ + D++ LF + R +GH + F ++ +LK
Sbjct: 118 LFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRL--RWEGHEVNQF---VLTTMLKLA 172
Query: 128 VCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWT 187
+ L VH +KLG N + LI+ Y + DA+ VF+ + R + VVWT
Sbjct: 173 IAMDAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWT 232
Query: 188 AKIV----NNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHA 243
A + N+C E F +VF+ + G K N + +SVLKA + G+ +H
Sbjct: 233 AMVSCYSENDCPENAF-RVFSKMRVSG---CKPNPFALTSVLKAAVCLPSV-VLGKGIHG 287
Query: 244 NIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYV 303
+K +++ +V L+DMY KC ++DA FE+I ++ + M+ Y ++
Sbjct: 288 CAIKTLNDTEPHVGGALLDMYAKCGDIKDARLAFEMI-PYDDVILLSFMISRYAQSNQNE 346
Query: 304 EATK-FLYLMKASGIQIQESLINDLRIACSSI 334
+A + FL LM++S + + SL + L+ AC+++
Sbjct: 347 QAFELFLRLMRSSVLPNEYSLSSVLQ-ACTNM 377
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 75/278 (26%), Positives = 135/278 (48%), Gaps = 7/278 (2%)
Query: 59 CGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAW 118
C + A +F+ + +D W M+ Y + + +F++M R G F
Sbjct: 210 CSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRVFSKM--RVSGCKPNPFA-- 265
Query: 119 IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL 178
+ VLKA VC ++ LGK +HG K + + G+L++ Y K ++DA F +
Sbjct: 266 -LTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARLAFEMI 324
Query: 179 KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCG 238
+ ++ + I + Q F F + R + N Y+ SSVL+AC + + G
Sbjct: 325 PYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQL-DFG 383
Query: 239 RQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIR 298
+Q+H + +KIG ESD +V L+D Y KC + + ++F + D + SWN ++VG+ +
Sbjct: 384 KQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEV-SWNTIVVGFSQ 442
Query: 299 NGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+GL EA M+A+ + + + + AC+S ++
Sbjct: 443 SGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTAS 480
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/266 (23%), Positives = 114/266 (42%), Gaps = 12/266 (4%)
Query: 31 ELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFN--SWAVMIVGYV 88
++ NH K + + L N L+ + C +D++ ++F LRD N SW ++VG+
Sbjct: 385 QIHNHAIK-IGHESDLFVGNALMDFYAKCNDMDSSLKIFSS--LRDANEVSWNTIVVGFS 441
Query: 89 DVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGS 148
+E +++F EM + + + + VL+AC T ++ Q+H + K
Sbjct: 442 QSGLGEEALSVFCEMQAAQMPCTQVTYSS-----VLRACASTASIRHAGQIHCSIEKSTF 496
Query: 149 SRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKE 208
+ + + SLI+ Y K + DA VF L + + W A I G F
Sbjct: 497 NNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFDR 556
Query: 209 MGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLE-SDEYVQCGLVDMYGKC 267
M + ++ N TF ++L C + + + G++ S E+ C +V + G+
Sbjct: 557 MNKSNVESNDITFVALLSVCSSTGLVNHGLSLFDSMRIDHGIKPSMEHYTC-IVRLLGRA 615
Query: 268 RLLRDAERVFELIVDKKNIASWNAML 293
L DA + I + W A+L
Sbjct: 616 GRLNDALQFIGDIPSAPSAMVWRALL 641
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 1/117 (0%)
Query: 6 LPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTA 65
+P T Y+ +++ C A ++ I K T++ N L+ + CG + A
Sbjct: 461 MPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIG-NSLIDTYAKCGYIRDA 519
Query: 66 RQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVC 122
++F + RD SW +I GY + + LF M K + F A + VC
Sbjct: 520 LKVFQHLMERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVC 576
>gi|302763107|ref|XP_002964975.1| hypothetical protein SELMODRAFT_30550 [Selaginella moellendorffii]
gi|300167208|gb|EFJ33813.1| hypothetical protein SELMODRAFT_30550 [Selaginella moellendorffii]
Length = 703
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 85/273 (31%), Positives = 131/273 (47%), Gaps = 11/273 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+ LL M+ CG +D A Q+F +P R SW +I + ++ I +F M
Sbjct: 25 DHLLQMYGKCGSVDDAIQVFHSLPRRSLFSWNFIIAAFAKNRHGRKAIEMFRSMDSAG-- 82
Query: 110 HMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+ P + + VL AC ++E GK++H G S +I + +L++ Y + L
Sbjct: 83 ----IKPDSATLSSVLGACSSLRDLEEGKKIHSRALARGLSSSIIVQNALVSMYARCSRL 138
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+ A VF +++ + V W A I R+G Q FK M ++ N TF+SV AC
Sbjct: 139 DVARVVFDKIESKSVVSWNAMIAACARQGEAEQALQLFKRM---ELEPNEVTFASVFNAC 195
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
+ D G+++H I LE++ V +V MYGK + A +VF I KN+ S
Sbjct: 196 SLLPDHREVGKRIHDRIRGSHLEANVTVATAIVTMYGKFGKVGMARQVFNGI-QHKNVVS 254
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQE 321
WNAML Y +N L EA + + M A +Q E
Sbjct: 255 WNAMLGAYTQNNLDREALEVYHEMVAQKVQRDE 287
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 82/296 (27%), Positives = 145/296 (48%), Gaps = 9/296 (3%)
Query: 41 NIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLF 100
+++ + ++ M+ G++ ARQ+F+ + ++ SW M+ Y +E + ++
Sbjct: 216 HLEANVTVATAIVTMYGKFGKVGMARQVFNGIQHKNVVSWNAMLGAYTQNNLDREALEVY 275
Query: 101 AEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLIN 160
EM+ +K + +V L ++LG ++H L G NI + +LI+
Sbjct: 276 HEMVAQK-----VQRDEVTVVIALGISASLRLLKLGIELHELSVAHGYDSNIKVQNALIS 330
Query: 161 FYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYT 220
YGK L+ A VFS+++ H+ V WTA IV + G + +K+M E ++ + T
Sbjct: 331 MYGKCNELDAARRVFSKVRAHDVVSWTALIVAYTQHGRNREALELYKQMEGEGMEPDKVT 390
Query: 221 FSSVLKACGGVDDDGNCGRQMHANIV--KIGLESDEYVQCGLVDMYGKCRLLRDAERVFE 278
F+SVL AC D G+ +HA ++ K G SD + L++MY KC L + +F+
Sbjct: 391 FTSVLSACSNT-SDLELGQALHARLLARKDGF-SDGVLVAALINMYVKCGRLDLSSEIFQ 448
Query: 279 LIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
D K + WNAM+ Y + G A +MK G+ ES ++ + AC+ +
Sbjct: 449 SCKDTKAVVVWNAMITAYEQEGYSRAAVDLYDMMKQRGLDPDESTLSSILSACAEL 504
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 80/286 (27%), Positives = 132/286 (46%), Gaps = 12/286 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ C +LD AR++F ++ D SW +IV Y +E + L+ +M
Sbjct: 326 NALISMYGKCNELDAARRVFSKVRAHDVVSWTALIVAYTQHGRNREALELYKQMEGEGME 385
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLF--KLGSSRNISLTGSLINFYGKFRC 167
+ F + VL AC T ++ELG+ +H L K G S + L +LIN Y K
Sbjct: 386 PDKVTFTS-----VLSACSNTSDLELGQALHARLLARKDGFSDGV-LVAALINMYVKCGR 439
Query: 168 LEDADFVFSQLKRHNTVV-WTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
L+ + +F K VV W A I +EG+ + + M + + + T SS+L
Sbjct: 440 LDLSSEIFQSCKDTKAVVVWNAMITAYEQEGYSRAAVDLYDMMKQRGLDPDESTLSSILS 499
Query: 227 ACGGVDDDGNCGRQMHANIVKI-GLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
AC + D G Q+H I+ + V L+ MY C +R+A+ VF+ + ++
Sbjct: 500 ACAELQDLEK-GEQLHVEIIASRDCSQNPVVLNALISMYASCGEIREAKAVFKRM-KNRD 557
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
+ SW ++ Y++ G A + M G+Q E + +AC
Sbjct: 558 VVSWTILISAYVQGGDARRALRLYRRMLVEGVQPTEPTFLCVFLAC 603
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 81/336 (24%), Positives = 152/336 (45%), Gaps = 12/336 (3%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCG 60
MD+ + + + ++ C+ +D ++ + R + +++ N L+ M+ C
Sbjct: 78 MDSAGIKPDSATLSSVLGACSSLRDLEEGKKIHSRALAR-GLSSSIIVQNALVSMYARCS 136
Query: 61 QLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWII 120
+LD AR +FD++ + SW MI + ++ + LF KR M L
Sbjct: 137 RLDVARVVFDKIESKSVVSWNAMIAACARQGEAEQALQLF----KR----MELEPNEVTF 188
Query: 121 VCVLKAC-VCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
V AC + + E+GK++H + N+++ +++ YGKF + A VF+ ++
Sbjct: 189 ASVFNACSLLPDHREVGKRIHDRIRGSHLEANVTVATAIVTMYGKFGKVGMARQVFNGIQ 248
Query: 180 RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGR 239
N V W A + + + + EM ++++++ T L + G
Sbjct: 249 HKNVVSWNAMLGAYTQNNLDREALEVYHEMVAQKVQRDEVTVVIALGISASL-RLLKLGI 307
Query: 240 QMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRN 299
++H V G +S+ VQ L+ MYGKC L A RVF V ++ SW A++V Y ++
Sbjct: 308 ELHELSVAHGYDSNIKVQNALISMYGKCNELDAARRVFSK-VRAHDVVSWTALIVAYTQH 366
Query: 300 GLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
G EA + M+ G++ + + ACS+ S
Sbjct: 367 GRNREALELYKQMEGEGMEPDKVTFTSVLSACSNTS 402
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 94/197 (47%), Gaps = 5/197 (2%)
Query: 136 GKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCR 195
G+++H + G + + L L+ YGK ++DA VF L R + W I +
Sbjct: 5 GRRIHAHIVASGLASDGFLGDHLLQMYGKCGSVDDAIQVFHSLPRRSLFSWNFIIAAFAK 64
Query: 196 EGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEY 255
H + F+ M IK +S T SSVL AC + D G+++H+ + GL S
Sbjct: 65 NRHGRKAIEMFRSMDSAGIKPDSATLSSVLGACSSLRDLEE-GKKIHSRALARGLSSSII 123
Query: 256 VQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKAS 315
VQ LV MY +C L A VF+ I + K++ SWNAM+ R G EA + L L K
Sbjct: 124 VQNALVSMYARCSRLDVARVVFDKI-ESKSVVSWNAMIAACARQG---EAEQALQLFKRM 179
Query: 316 GIQIQESLINDLRIACS 332
++ E + ACS
Sbjct: 180 ELEPNEVTFASVFNACS 196
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 95/219 (43%), Gaps = 7/219 (3%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDE- 71
+T ++ C+ D L + R + + + L+ M+V CG+LD + ++F
Sbjct: 391 FTSVLSACSNTSDLELGQALHARLLARKDGFSDGVLVAALINMYVKCGRLDLSSEIFQSC 450
Query: 72 MPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTM 131
+ W MI Y + + L+ +MMK++ L + +L AC
Sbjct: 451 KDTKAVVVWNAMITAYEQEGYSRAAVDLY-DMMKQRG----LDPDESTLSSILSACAELQ 505
Query: 132 NMELGKQVH-GLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKI 190
++E G+Q+H ++ S+N + +LI+ Y + +A VF ++K + V WT I
Sbjct: 506 DLEKGEQLHVEIIASRDCSQNPVVLNALISMYASCGEIREAKAVFKRMKNRDVVSWTILI 565
Query: 191 VNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
+ G + ++ M E ++ TF V ACG
Sbjct: 566 SAYVQGGDARRALRLYRRMLVEGVQPTEPTFLCVFLACG 604
>gi|347954482|gb|AEP33741.1| chlororespiratory reduction 21, partial [Thlaspi arvense]
Length = 732
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 83/264 (31%), Positives = 134/264 (50%), Gaps = 9/264 (3%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+ CG LD AR++FDE+P R+ +W ++VGYV +E I LF++M RK+G V
Sbjct: 197 MYGKCGVLDEARKVFDEIPERNVVAWNALMVGYVQNGMNEEAIRLFSDM--RKEG----V 250
Query: 115 FPAWIIVCV-LKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADF 173
P + V L A +E GKQ H + G + L S++NFY K +E A+
Sbjct: 251 EPTRVTVSTCLSASANMGGIEEGKQSHAIAVVNGLELDNILGTSILNFYCKVGLIECAEM 310
Query: 174 VFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDD 233
+F ++ + V W I ++G + M E +K + T S+++ A D
Sbjct: 311 IFDRMVEKDVVTWNLLISGYVQQGLVEDAIRMCQSMRLENLKFDCVTLSTLMSAAARTQD 370
Query: 234 DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
G+++ + ++ LESD + VDMY KC + DA++VF+ V +K++ WN +L
Sbjct: 371 S-KLGKEVQSYCIRHSLESDIVLASTAVDMYAKCGSIVDAKKVFDSTV-QKDLILWNTLL 428
Query: 294 VGYIRNGLYVEATKFLYLMKASGI 317
Y +GL EA + Y M+ +
Sbjct: 429 GAYAESGLSGEALRLFYEMQLESV 452
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 86/344 (25%), Positives = 167/344 (48%), Gaps = 16/344 (4%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFL-NRLLLMHVSC 59
MD + I ++Y +++ C ++++ ++ I K+ + ++ +L++ + C
Sbjct: 41 MDFRKIRIGPEIYGEILQGCVYKRNLCTGKQIHARILKKGDFYARNEYIETKLVIFYAKC 100
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AW 118
L+ A LF ++ +R+ SWA +I + + + F EM++ +FP +
Sbjct: 101 DALEIAELLFSKLRVRNVFSWAAIIGVKCRIGLVEGALMGFVEMLENG------IFPDNF 154
Query: 119 IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL 178
++ V KAC G+ VHG + K G + + SL + YGK L++A VF ++
Sbjct: 155 VVPNVCKACGALQWSRFGRGVHGYVVKAGFHDCVFVASSLADMYGKCGVLDEARKVFDEI 214
Query: 179 KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC---GGVDDDG 235
N V W A +V + G + F +M +E ++ T S+ L A GG+++
Sbjct: 215 PERNVVAWNALMVGYVQNGMNEEAIRLFSDMRKEGVEPTRVTVSTCLSASANMGGIEE-- 272
Query: 236 NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
G+Q HA V GLE D + +++ Y K L+ AE +F+ +V+ K++ +WN ++ G
Sbjct: 273 --GKQSHAIAVVNGLELDNILGTSILNFYCKVGLIECAEMIFDRMVE-KDVVTWNLLISG 329
Query: 296 YIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKI 339
Y++ GL +A + M+ ++ ++ L A + SK+
Sbjct: 330 YVQQGLVEDAIRMCQSMRLENLKFDCVTLSTLMSAAARTQDSKL 373
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/288 (20%), Positives = 114/288 (39%), Gaps = 44/288 (15%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
+L + G ++ A +FD M +D +W ++I GYV ++ I + M
Sbjct: 295 ILNFYCKVGLIECAEMIFDRMVEKDVVTWNLLISGYVQQGLVEDAIRMCQSMRLEN---- 350
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
L F + ++ A T + +LGK+V + +I L + ++ Y K + DA
Sbjct: 351 -LKFDCVTLSTLMSAAARTQDSKLGKEVQSYCIRHSLESDIVLASTAVDMYAKCGSIVDA 409
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--- 228
VF + + ++W + G + F EM E + N T++ ++ +
Sbjct: 410 KKVFDSTVQKDLILWNTLLGAYAESGLSGEALRLFYEMQLESVPPNVITWNLIILSLLRN 469
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
G V++ QM ++ G++ N+ S
Sbjct: 470 GQVNEAKEMFLQMQSS--------------GII----------------------PNLVS 493
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
W M+ G ++NG EA FL M+ SG++ I AC+++++
Sbjct: 494 WTTMMNGLVQNGCSEEAILFLRKMQESGLRPNVFSITVALSACANLAS 541
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 97/203 (47%), Gaps = 20/203 (9%)
Query: 41 NIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMP----LRDFNSWAVMIVGYVDVADYQEC 96
++ P ++ N ++L + GQ++ A+++F +M + + SW M+ G V +E
Sbjct: 451 SVPPNVITWNLIILSLLRNGQVNEAKEMFLQMQSSGIIPNLVSWTTMMNGLVQNGCSEEA 510
Query: 97 ITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSS-RNISLT 155
I +M ++ G VF I L AC ++ G+ +HG + + ++S+
Sbjct: 511 ILFLRKM--QESGLRPNVFS---ITVALSACANLASLHYGRSIHGYIIRNQRHCSSVSIE 565
Query: 156 GSLINFYGKFRCLEDADFVF-----SQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMG 210
SL++ Y K + A+ VF S+L +N ++ + N +E ++ ++MG
Sbjct: 566 TSLVDMYAKCGDINKAERVFRSKLYSELPLYNAMISGFAVYGNVKEAI--GLYRSLEDMG 623
Query: 211 RERIKKNSYTFSSVLKACGGVDD 233
IK +S TF+S+L AC D
Sbjct: 624 ---IKPDSITFTSLLSACNHAGD 643
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 62/295 (21%), Positives = 113/295 (38%), Gaps = 39/295 (13%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R +++ ++ + + M+ CG + A+++FD +D W ++ Y + E +
Sbjct: 383 RHSLESDIVLASTAVDMYAKCGSIVDAKKVFDSTVQKDLILWNTLLGAYAESGLSGEALR 442
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
LF EM L P +I L N ++ + + ++ SS I
Sbjct: 443 LFYEMQ-------LESVPPNVITWNLIILSLLRNGQV-NEAKEMFLQMQSSGIIP----- 489
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
N V WT + + G + ++M ++ N
Sbjct: 490 -----------------------NLVSWTTMMNGLVQNGCSEEAILFLRKMQESGLRPNV 526
Query: 219 YTFSSVLKACGGVDDDGNCGRQMHANIVKIGLE-SDEYVQCGLVDMYGKCRLLRDAERVF 277
++ + L AC + + GR +H I++ S ++ LVDMY KC + AERVF
Sbjct: 527 FSITVALSACANLASL-HYGRSIHGYIIRNQRHCSSVSIETSLVDMYAKCGDINKAERVF 585
Query: 278 ELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+ + +NAM+ G+ G EA ++ GI+ L AC+
Sbjct: 586 RSKL-YSELPLYNAMISGFAVYGNVKEAIGLYRSLEDMGIKPDSITFTSLLSACN 639
>gi|302796767|ref|XP_002980145.1| hypothetical protein SELMODRAFT_112044 [Selaginella moellendorffii]
gi|300152372|gb|EFJ19015.1| hypothetical protein SELMODRAFT_112044 [Selaginella moellendorffii]
Length = 434
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 91/316 (28%), Positives = 150/316 (47%), Gaps = 20/316 (6%)
Query: 28 GAFELLNHIRKRVNIKPTLLFLNRLLLM-------HVSCGQLDTARQLFDEMPLRDFNSW 80
A ELL R V K T ++R +L+ + CG + +AR++FD MP R+ SW
Sbjct: 21 AAPELLAQARSIVE-KITAAGMDRDVLVATAVVSAYARCGAIASAREVFDAMPARNIVSW 79
Query: 81 AVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWII--VCVLKACVCTM--NMELG 136
MI Y + I +F + + F A I + +++AC C+ N+ G
Sbjct: 80 NAMIEAYAQHGRGADAIAVFRLL------ELEGTFQANKITFLALIEACSCSWQGNLGTG 133
Query: 137 KQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCRE 196
+ H G + SL SL+N Y K +E+A VF + + + I +
Sbjct: 134 RLFHRRAIASGFHTDESLKNSLVNMYSKCGSVEEARQVFDSIAPRTAISCSVMITTLAQN 193
Query: 197 GHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYV 256
G + + ++EM E ++ N+ TF S+L+A + G GR++HA+I+ GL D +
Sbjct: 194 GFYREALELYREMQEEGLESNNMTFLSLLEASANLTALGQ-GRRIHASIIDYGLARDLLI 252
Query: 257 QCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASG 316
Q L+ MYGKC L +A VFE + ++KN+ +W +++ Y ++G E+ + M G
Sbjct: 253 QTALMYMYGKCAGLDEAREVFESM-ERKNVVAWTSIIAAYSQHGHCEESLELFRRMALDG 311
Query: 317 IQIQESLINDLRIACS 332
+ E L CS
Sbjct: 312 VMPNEVTYGTLLSTCS 327
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 115/242 (47%), Gaps = 14/242 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ CG ++ ARQ+FD + R S +VMI Y+E + L+ EM +
Sbjct: 153 NSLVNMYSKCGSVEEARQVFDSIAPRTAISCSVMITTLAQNGFYREALELYREMQEEGLE 212
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ F + +L+A + G+++H + G +R++ + +L+ YGK L+
Sbjct: 213 SNNMTF-----LSLLEASANLTALGQGRRIHASIIDYGLARDLLIQTALMYMYGKCAGLD 267
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC- 228
+A VF ++R N V WT+ I + GH + F+ M + + N T+ ++L C
Sbjct: 268 EAREVFESMERKNVVAWTSIIAAYSQHGHCEESLELFRRMALDGVMPNEVTYGTLLSTCS 327
Query: 229 -GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
G+ D+ + N V++ + +C +VD G+ L +AE + + + +
Sbjct: 328 HAGLVDEA------YDNFVEMKNPRLTHYRC-MVDALGRAGKLDEAEDLLNNMPFEPDSV 380
Query: 288 SW 289
+W
Sbjct: 381 AW 382
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 2/103 (1%)
Query: 214 IKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDA 273
IK TF + L AC + R + I G++ D V +V Y +C + A
Sbjct: 6 IKATRVTFLNALSACAAPELLAQ-ARSIVEKITAAGMDRDVLVATAVVSAYARCGAIASA 64
Query: 274 ERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASG 316
VF+ + +NI SWNAM+ Y ++G +A L++ G
Sbjct: 65 REVFDAM-PARNIVSWNAMIEAYAQHGRGADAIAVFRLLELEG 106
>gi|15235115|ref|NP_195663.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75210987|sp|Q9SVA5.1|PP357_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g39530
gi|5042169|emb|CAB44688.1| putative protein [Arabidopsis thaliana]
gi|7270937|emb|CAB80616.1| putative protein [Arabidopsis thaliana]
gi|332661682|gb|AEE87082.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 834
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 88/330 (26%), Positives = 156/330 (47%), Gaps = 13/330 (3%)
Query: 8 ITTDMYTC--LIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTA 65
+ DMY C ++ C + G ++ + N+ N L+ M+ C L A
Sbjct: 346 LKPDMYACSSILTSCA-SLHALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDA 404
Query: 66 RQLFDEMPLRDFNSWAVMIVGYVDVA---DYQECITLFAEMMKRKKGHMLLVFPAWIIVC 122
R++FD D + MI GY + + E + +F +M R LL F V
Sbjct: 405 RKVFDIFAAADVVLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTF-----VS 459
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
+L+A ++ L KQ+HGL+FK G + +I +LI+ Y CL+D+ VF ++K +
Sbjct: 460 LLRASASLTSLGLSKQIHGLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKD 519
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
V+W + ++ + N F E+ R + + +TF++++ A G + G++ H
Sbjct: 520 LVIWNSMFAGYVQQSENEEALNLFLELQLSRERPDEFTFANMVTAAGNLASV-QLGQEFH 578
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
++K GLE + Y+ L+DMY KC DA + F+ +++ WN+++ Y +G
Sbjct: 579 CQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDSAA-SRDVVCWNSVISSYANHGEG 637
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIACS 332
+A + L M + GI+ + ACS
Sbjct: 638 KKALQMLEKMMSEGIEPNYITFVGVLSACS 667
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 88/337 (26%), Positives = 155/337 (45%), Gaps = 13/337 (3%)
Query: 8 ITTDMY--TCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTA 65
+ D Y + ++ C+ G ++ HI R ++ +N L+ +V CG++ A
Sbjct: 245 VVPDGYILSTVLSACSILPFLEGGKQIHAHIL-RYGLEMDASLMNVLIDSYVKCGRVIAA 303
Query: 66 RQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLK 125
+LF+ MP ++ SW ++ GY A ++E + LF M K L + +L
Sbjct: 304 HKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSK-----FGLKPDMYACSSILT 358
Query: 126 ACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVV 185
+C + G QVH K + +T SLI+ Y K CL DA VF + V+
Sbjct: 359 SCASLHALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVL 418
Query: 186 WTAKIVNNCREG---HFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
+ A I R G H+ N F++M I+ + TF S+L+A + G +Q+H
Sbjct: 419 FNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLG-LSKQIH 477
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
+ K GL D + L+D+Y C L+D+ VF+ + K++ WN+M GY++
Sbjct: 478 GLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEM-KVKDLVIWNSMFAGYVQQSEN 536
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIACSSISASKI 339
EA ++ S + E ++ A ++++ ++
Sbjct: 537 EEALNLFLELQLSRERPDEFTFANMVTAAGNLASVQL 573
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 76/249 (30%), Positives = 122/249 (48%), Gaps = 7/249 (2%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ ++ G +D AR +FD +P + +W MI G V + + LF ++M+
Sbjct: 189 LIDFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDN---- 244
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+V +I+ VL AC +E GKQ+H + + G + SL LI+ Y K + A
Sbjct: 245 -VVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAA 303
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
+F+ + N + WT + + + F M + +K + Y SS+L +C +
Sbjct: 304 HKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASL 363
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
G G Q+HA +K L +D YV L+DMY KC L DA +VF+ I ++ +NA
Sbjct: 364 HALG-FGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFD-IFAAADVVLFNA 421
Query: 292 MLVGYIRNG 300
M+ GY R G
Sbjct: 422 MIEGYSRLG 430
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 81/290 (27%), Positives = 143/290 (49%), Gaps = 10/290 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ ++ G + AR++F++MP R+ SW+ M+ Y+E + +F E + +K
Sbjct: 83 NILINLYSRAGGMVYARKVFEKMPERNLVSWSTMVSACNHHGIYEESLVVFLEFWRTRKD 142
Query: 110 HMLLVFP-AWIIVCVLKAC--VCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166
P +I+ ++AC + + Q+ L K G R++ + LI+FY K
Sbjct: 143 S-----PNEYILSSFIQACSGLDGRGRWMVFQLQSFLVKSGFDRDVYVGTLLIDFYLKDG 197
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
++ A VF L +TV WT I + G + F ++ + + + Y S+VL
Sbjct: 198 NIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYILSTVLS 257
Query: 227 ACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
AC + G+Q+HA+I++ GLE D + L+D Y KC + A ++F + + KNI
Sbjct: 258 AC-SILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMPN-KNI 315
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
SW +L GY +N L+ EA + M G++ + + +C+S+ A
Sbjct: 316 ISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHA 365
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 88/196 (44%), Gaps = 3/196 (1%)
Query: 139 VHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGH 198
VHG + G + L+ LIN Y + + A VF ++ N V W+ + G
Sbjct: 66 VHGQIIVWGLELDTYLSNILINLYSRAGGMVYARKVFEKMPERNLVSWSTMVSACNHHGI 125
Query: 199 FHQVFNDFKEMGRERI-KKNSYTFSSVLKACGGVDDDGNCGR-QMHANIVKIGLESDEYV 256
+ + F E R R N Y SS ++AC G+D G Q+ + +VK G + D YV
Sbjct: 126 YEESLVVFLEFWRTRKDSPNEYILSSFIQACSGLDGRGRWMVFQLQSFLVKSGFDRDVYV 185
Query: 257 QCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASG 316
L+D Y K + A VF+ + +K + +W M+ G ++ G + + Y +
Sbjct: 186 GTLLIDFYLKDGNIDYARLVFDALPEKSTV-TWTTMISGCVKMGRSYVSLQLFYQLMEDN 244
Query: 317 IQIQESLINDLRIACS 332
+ +++ + ACS
Sbjct: 245 VVPDGYILSTVLSACS 260
>gi|125577630|gb|EAZ18852.1| hypothetical protein OsJ_34389 [Oryza sativa Japonica Group]
Length = 587
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 79/249 (31%), Positives = 125/249 (50%), Gaps = 9/249 (3%)
Query: 53 LLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHML 112
L M+ G+L AR LF EMP R+ +W ++ V D + T+ A R+ G +
Sbjct: 54 LDMYFKTGRLKLARHLFGEMPNRNVVAWNAVMTN--AVLDGRPLETIEAYFGLREAGGL- 110
Query: 113 LVFPAWIIVCVL-KACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
P + C AC M + LG+Q HG + K G ++S+ S+++FYGK RC A
Sbjct: 111 ---PNVVSACAFFNACAGAMYLSLGEQFHGFVVKCGFEMDVSVLNSMVDFYGKCRCAGKA 167
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
VF + N+V W + + + G + F + R + + SS L C G+
Sbjct: 168 RAVFDGMGVRNSVSWCSMVAAYAQNGAEEEAFAAYLGARRSGEEPTDFMVSSALTTCAGL 227
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
+ GR +HA V+ ++++ +V LVDMYGKC + DAE++F ++N+ +WNA
Sbjct: 228 LGL-HLGRALHAVAVRSCIDANIFVASALVDMYGKCGCVEDAEQIF-YETPQRNLVTWNA 285
Query: 292 MLVGYIRNG 300
M+ GY G
Sbjct: 286 MIGGYAHIG 294
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/287 (24%), Positives = 121/287 (42%), Gaps = 17/287 (5%)
Query: 16 LIKECTFQKDSAGAF-----ELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFD 70
++ C F AGA E + + + + LN ++ + C AR +FD
Sbjct: 113 VVSACAFFNACAGAMYLSLGEQFHGFVVKCGFEMDVSVLNSMVDFYGKCRCAGKARAVFD 172
Query: 71 EMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCT 130
M +R+ SW M+ Y +E + + R+ G F ++ L C
Sbjct: 173 GMGVRNSVSWCSMVAAYAQNGAEEEAFAAY--LGARRSGEEPTDF---MVSSALTTCAGL 227
Query: 131 MNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKI 190
+ + LG+ +H + + NI + +L++ YGK C+EDA+ +F + + N V W A I
Sbjct: 228 LGLHLGRALHAVAVRSCIDANIFVASALVDMYGKCGCVEDAEQIFYETPQRNLVTWNAMI 287
Query: 191 VNNCREGHFHQVFNDFKEMGRE-RIKKNSYTFSSVLKAC--GGVDDDGNCGRQMHANIVK 247
G F +M R N T +V+ +C GG+ DG +
Sbjct: 288 GGYAHIGDAQNALLVFDDMIRSGETAPNYITLVNVITSCSRGGLTKDGY--ELFETMRER 345
Query: 248 IGLES-DEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
G+E E+ C +VD+ G+ + A V + + + +I+ W A+L
Sbjct: 346 FGIEPRTEHYAC-VVDLLGRAGMEEQAYEVIQGMPMRPSISVWGALL 391
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 88/201 (43%), Gaps = 3/201 (1%)
Query: 135 LGKQVHGLLFKLGS-SRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNN 193
+G Q+H L + G + ++ + ++ Y K L+ A +F ++ N V W A + N
Sbjct: 29 IGPQIHSLAIRFGYLPVDPFVSCAALDMYFKTGRLKLARHLFGEMPNRNVVAWNAVMTNA 88
Query: 194 CREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESD 253
+G + + + N + + AC G + G Q H +VK G E D
Sbjct: 89 VLDGRPLETIEAYFGLREAGGLPNVVSACAFFNACAGAMYL-SLGEQFHGFVVKCGFEMD 147
Query: 254 EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMK 313
V +VD YGKCR A VF+ + +N SW +M+ Y +NG EA +
Sbjct: 148 VSVLNSMVDFYGKCRCAGKARAVFDGM-GVRNSVSWCSMVAAYAQNGAEEEAFAAYLGAR 206
Query: 314 ASGIQIQESLINDLRIACSSI 334
SG + + +++ C+ +
Sbjct: 207 RSGEEPTDFMVSSALTTCAGL 227
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 56/109 (51%), Gaps = 2/109 (1%)
Query: 209 MGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIG-LESDEYVQCGLVDMYGKC 267
M R ++ N +TF S KA G Q+H+ ++ G L D +V C +DMY K
Sbjct: 1 MLRLGLRPNDFTFPSAFKAAASAPPRSTIGPQIHSLAIRFGYLPVDPFVSCAALDMYFKT 60
Query: 268 RLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASG 316
L+ A +F + + +N+ +WNA++ + +G +E + + ++ +G
Sbjct: 61 GRLKLARHLFGEMPN-RNVVAWNAVMTNAVLDGRPLETIEAYFGLREAG 108
>gi|255572205|ref|XP_002527042.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533604|gb|EEF35342.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 520
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 82/288 (28%), Positives = 139/288 (48%), Gaps = 9/288 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+ L+ +H C A QLFDEMP RD W +I Y ++ + +F +M R G
Sbjct: 69 SSLVSLHAKCNLFGYAIQLFDEMPERDVACWNTVISCYYQDGKAEKALEMFGKM--RDSG 126
Query: 110 HMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
P + + V+ +C +++E GK++H + + G + + +L++ YGKF CL
Sbjct: 127 FE----PNSVTLTTVISSCARLLDLERGKEIHREVMQNGMVLDGFVGSALVDMYGKFGCL 182
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+ A +F Q+ + V W + I + F M E K T SS+L AC
Sbjct: 183 DLAKDIFEQMPKKTLVAWNSLIAGYSSAADSKECIELFWRMNMEGTKPTVTTLSSILLAC 242
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
+ GR +H V+ ++ D +V GL+++Y KC ++ AE +F ++ K N+
Sbjct: 243 SRAAHLQH-GRFIHGYAVRNRVQLDIFVSSGLIELYFKCGKVQSAENIFYML-PKANVVL 300
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
WN M+ GY+ G YV+A MK + ++ + + ACS ++A
Sbjct: 301 WNVMISGYVTIGDYVKALDMYDEMKIASVKPDAVTFSSILSACSQLAA 348
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 73/276 (26%), Positives = 131/276 (47%), Gaps = 18/276 (6%)
Query: 36 IRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQE 95
+R RV + + + L+ ++ CG++ +A +F +P + W VMI GYV + DY +
Sbjct: 259 VRNRVQLD--IFVSSGLIELYFKCGKVQSAENIFYMLPKANVVLWNVMISGYVTIGDYVK 316
Query: 96 CITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLT 155
+ ++ EM + F + +L AC +E GK++H + K N +
Sbjct: 317 ALDMYDEMKIASVKPDAVTFSS-----ILSACSQLAALEKGKEIHNCITKNDLETNEIVM 371
Query: 156 GSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIK 215
G+L++ Y K +++A VF++L + + WT+ I G + F+E+ + +
Sbjct: 372 GALLDMYAKCGAVDEALSVFNKLPERDLLSWTSIISAYGSHGQALEALRLFEELQQSKAS 431
Query: 216 KNSYTFSSVLKAC---GGVDDDGNCGRQMHANI-VKIGLESDEYVQCGLVDMYGKCRLLR 271
++ TF +VL AC G VD QM N +K GL E+ C L+D+ G R+
Sbjct: 432 PDAVTFLAVLSACSHAGLVDKGYYYFNQMITNYGIKPGL---EHYSC-LIDLLG--RIQE 485
Query: 272 DAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATK 307
++ + E+ + + L G + GLY+E K
Sbjct: 486 QSQELNEIPCPNRAEKYYLLYLSGSLA-GLYLEDMK 520
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 113/240 (47%), Gaps = 6/240 (2%)
Query: 93 YQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNI 152
Y E + LF +++ + L ++ VLKAC + G+ +H L K G +I
Sbjct: 10 YTEALELFDRLLQ----YPYLQPDSFTYPSVLKACGGLGRYDYGRMIHTHLIKSGFVFDI 65
Query: 153 SLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRE 212
+ SL++ + K A +F ++ + W I ++G + F +M
Sbjct: 66 VVASSLVSLHAKCNLFGYAIQLFDEMPERDVACWNTVISCYYQDGKAEKALEMFGKMRDS 125
Query: 213 RIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRD 272
+ NS T ++V+ +C + D G+++H +++ G+ D +V LVDMYGK L
Sbjct: 126 GFEPNSVTLTTVISSCARLLDLER-GKEIHREVMQNGMVLDGFVGSALVDMYGKFGCLDL 184
Query: 273 AERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
A+ +FE + KK + +WN+++ GY E + + M G + + ++ + +ACS
Sbjct: 185 AKDIFEQM-PKKTLVAWNSLIAGYSSAADSKECIELFWRMNMEGTKPTVTTLSSILLACS 243
>gi|413946224|gb|AFW78873.1| hypothetical protein ZEAMMB73_227843 [Zea mays]
Length = 778
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 86/294 (29%), Positives = 143/294 (48%), Gaps = 15/294 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ + CG+ AR++FDEMP RD SW ++ + ++ MM+
Sbjct: 158 NTLVTFYAVCGRAADARRVFDEMPARDVVSWNSLVSALLTNGMLEDAKRAVVGMMRSG-- 215
Query: 110 HMLLVFPAWI--IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
P + +V +L AC + G VHGL+ K G + ++L +L++ YGKF
Sbjct: 216 -----VPVNVASLVSILPACGTERDEGFGLCVHGLVLKFGLNSVVNLGNALVDMYGKFGD 270
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
LE + VF+ ++ N V W + I G V F+ M + S T SS+L A
Sbjct: 271 LESSMHVFNGMQEKNEVSWNSAIGCFAHAGFHEDVLEMFRLMSEHDVTPGSVTLSSLLPA 330
Query: 228 CGGVDDDG--NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
+ D G + G+++H ++ +ESD ++ L+DMY K A +FE I + +N
Sbjct: 331 ---LVDLGYFHLGKELHGYSIRRAVESDIFIANTLMDMYAKFGCSEKASAIFENI-EVRN 386
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKI 339
+ SWNAM+ +NG EA + + M+ +G + +L ACS +++ K+
Sbjct: 387 VVSWNAMIANLTQNGAEAEAFRLVIEMQKNGECPNSFTLVNLLPACSRVASVKM 440
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 86/335 (25%), Positives = 154/335 (45%), Gaps = 13/335 (3%)
Query: 6 LPITTDMYTCLIKECTFQKDSAGAFELLNH-IRKRVNIKPTLLFLNRLLLMHVSCGQLDT 64
+P+ ++ C ++D F L H + + + + N L+ M+ G L++
Sbjct: 216 VPVNVASLVSILPACGTERDEG--FGLCVHGLVLKFGLNSVVNLGNALVDMYGKFGDLES 273
Query: 65 ARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVC-V 123
+ +F+ M ++ SW I + +++ + +F M + V P + + +
Sbjct: 274 SMHVFNGMQEKNEVSWNSAIGCFAHAGFHEDVLEMFRLMSEHD------VTPGSVTLSSL 327
Query: 124 LKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNT 183
L A V LGK++HG + +I + +L++ Y KF C E A +F ++ N
Sbjct: 328 LPALVDLGYFHLGKELHGYSIRRAVESDIFIANTLMDMYAKFGCSEKASAIFENIEVRNV 387
Query: 184 VVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHA 243
V W A I N + G + F EM + NS+T ++L AC V G+Q+HA
Sbjct: 388 VSWNAMIANLTQNGAEAEAFRLVIEMQKNGECPNSFTLVNLLPACSRVASV-KMGKQIHA 446
Query: 244 NIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYV 303
++ L SD +V L+D+Y KC L A +F+ +K+ S+N ++VGY ++
Sbjct: 447 WSIRRSLMSDLFVSNALIDVYAKCGQLNLARYIFDR--SEKDGVSYNTLIVGYSQSQCCF 504
Query: 304 EATKFLYLMKASGIQIQESLINDLRIACSSISASK 338
E+ M+ +GI+ ACS++SA K
Sbjct: 505 ESLHLFQQMRLAGIEHDAVSFMGCLSACSNLSAFK 539
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 71/280 (25%), Positives = 136/280 (48%), Gaps = 8/280 (2%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R ++ + N L+ M+ G + A +F+ + +R+ SW MI E
Sbjct: 349 RRAVESDIFIANTLMDMYAKFGCSEKASAIFENIEVRNVVSWNAMIANLTQNGAEAEAFR 408
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
L EM K + ++ +V +L AC ++++GKQ+H + ++ ++ +L
Sbjct: 409 LVIEMQKNGE-----CPNSFTLVNLLPACSRVASVKMGKQIHAWSIRRSLMSDLFVSNAL 463
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
I+ Y K L A ++F + ++ + V + IV + + + F++M I+ ++
Sbjct: 464 IDVYAKCGQLNLARYIFDRSEK-DGVSYNTLIVGYSQSQCCFESLHLFQQMRLAGIEHDA 522
Query: 219 YTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE 278
+F L AC + G+++H +VK L+S ++ L+D+Y K +L A ++F
Sbjct: 523 VSFMGCLSACSNLSAFKQ-GKEIHGVLVKRLLDSHPFLANSLLDVYTKGGMLDTASKIFN 581
Query: 279 LIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
I +K++ASWN M++GY +G A + LMK GI+
Sbjct: 582 RIT-QKDVASWNTMILGYGMHGQIDVAFELFDLMKDDGIE 620
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 116/257 (45%), Gaps = 11/257 (4%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R ++ L N L+ ++ CGQL+ AR +FD +D S+ +IVGY E +
Sbjct: 450 RRSLMSDLFVSNALIDVYAKCGQLNLARYIFDRSE-KDGVSYNTLIVGYSQSQCCFESLH 508
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
LF +M H + F + L AC + GK++HG+L K + L SL
Sbjct: 509 LFQQMRLAGIEHDAVSF-----MGCLSACSNLSAFKQGKEIHGVLVKRLLDSHPFLANSL 563
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
++ Y K L+ A +F+++ + + W I+ G F F M + I+ +
Sbjct: 564 LDVYTKGGMLDTASKIFNRITQKDVASWNTMILGYGMHGQIDVAFELFDLMKDDGIEYDH 623
Query: 219 YTFSSVLKAC--GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERV 276
++ +VL C GG+ D G++ + ++ ++ + +VD+ G+ L ++ +
Sbjct: 624 VSYIAVLSVCSHGGLVDR---GKKYFSQMIAQNIKPQQMHYACMVDLLGRAGQLSESAEI 680
Query: 277 FELIVDKKNIASWNAML 293
+ + N W A+L
Sbjct: 681 IRNMPFRANSDVWGALL 697
>gi|356567222|ref|XP_003551820.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g39620-like [Glycine max]
Length = 887
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 84/283 (29%), Positives = 143/283 (50%), Gaps = 7/283 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ CG++ A Q+FD+M ++D SWA M+ GYV Y E + L EM KRK
Sbjct: 266 NSLIDMYSKCGEVKLAHQIFDQMWVKDDISWATMMAGYVHHGCYFEVLQLLDEM-KRKHI 324
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
M + +V + A T ++E GK+VH +LG + +I + +++ Y K L+
Sbjct: 325 KMNKIS----VVNSVLAATETRDLEKGKEVHNYALQLGMTSDIVVATPIVSMYAKCGELK 380
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A F L+ + VVW+A + + G+ + + F+EM E +K + SS++ AC
Sbjct: 381 KAKEFFLSLEGRDLVVWSAFLSALVQAGYPGEALSIFQEMQHEGLKPDKTILSSLVSACA 440
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ G+ MH ++K + SD V LV MY +C+ A +F + K++ +W
Sbjct: 441 EISSS-RLGKMMHCYVIKADMGSDISVATTLVSMYTRCKSFMYAMTLFNRM-HYKDVVAW 498
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
N ++ G+ + G A + ++ SG+Q + L AC+
Sbjct: 499 NTLINGFTKCGDPRLALEMFLRLQLSGVQPDSGTMVSLLSACA 541
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 77/266 (28%), Positives = 124/266 (46%), Gaps = 10/266 (3%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+ CG+L A++ F + RD W+ + V E +++F EM H L
Sbjct: 372 MYAKCGELKKAKEFFLSLEGRDLVVWSAFLSALVQAGYPGEALSIFQEMQ-----HEGLK 426
Query: 115 FPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFV 174
I+ ++ AC + LGK +H + K +IS+ +L++ Y + + A +
Sbjct: 427 PDKTILSSLVSACAEISSSRLGKMMHCYVIKADMGSDISVATTLVSMYTRCKSFMYAMTL 486
Query: 175 FSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDD 234
F+++ + V W I + G F + ++ +S T S+L AC +DD
Sbjct: 487 FNRMHYKDVVAWNTLINGFTKCGDPRLALEMFLRLQLSGVQPDSGTMVSLLSACALLDDL 546
Query: 235 --GNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAM 292
G C H NI+K G+ES+ +V+ L+DMY KC L AE +F L K+ SWN M
Sbjct: 547 YLGIC---FHGNIIKNGIESEMHVKVALIDMYAKCGSLCTAENLFHLNKHVKDEVSWNVM 603
Query: 293 LVGYIRNGLYVEATKFLYLMKASGIQ 318
+ GY+ NG EA MK ++
Sbjct: 604 IAGYLHNGCANEAISTFNQMKLESVR 629
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 88/332 (26%), Positives = 162/332 (48%), Gaps = 19/332 (5%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
+T ++K CT D + I R ++ + L+ M+ G LD AR++FD+M
Sbjct: 130 FTFVLKACTGALDFHEGVAIHQDIASR-ELECDVFIGTGLVDMYCKMGHLDNARKVFDKM 188
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTM- 131
P +D SW MI G ++ E + +F + M+ ++G V P + + L V +
Sbjct: 189 PGKDVASWNAMISGLSQSSNPCEALEIF-QRMQMEEG----VEPDSVSILNLAPAVSRLE 243
Query: 132 NMELGKQVHGLLFK---LGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTA 188
+++ K +HG + + G N SLI+ Y K ++ A +F Q+ + + W
Sbjct: 244 DVDSCKSIHGYVVRRCVFGVVSN-----SLIDMYSKCGEVKLAHQIFDQMWVKDDISWAT 298
Query: 189 KIVNNCREGHFHQVFNDFKEMGRERIKKNSYT-FSSVLKACGGVDDDGNCGRQMHANIVK 247
+ G + +V EM R+ IK N + +SVL A D + G+++H ++
Sbjct: 299 MMAGYVHHGCYFEVLQLLDEMKRKHIKMNKISVVNSVLAATETRDLEK--GKEVHNYALQ 356
Query: 248 IGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATK 307
+G+ SD V +V MY KC L+ A+ F L ++ +++ W+A L ++ G EA
Sbjct: 357 LGMTSDIVVATPIVSMYAKCGELKKAKEFF-LSLEGRDLVVWSAFLSALVQAGYPGEALS 415
Query: 308 FLYLMKASGIQIQESLINDLRIACSSISASKI 339
M+ G++ +++++ L AC+ IS+S++
Sbjct: 416 IFQEMQHEGLKPDKTILSSLVSACAEISSSRL 447
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 73/271 (26%), Positives = 122/271 (45%), Gaps = 12/271 (4%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ C A LF+ M +D +W +I G+ D + + +F + +
Sbjct: 470 LVSMYTRCKSFMYAMTLFNRMHYKDVVAWNTLINGFTKCGDPRLALEMFLRL------QL 523
Query: 112 LLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
V P + +V +L AC ++ LG HG + K G + + +LI+ Y K L
Sbjct: 524 SGVQPDSGTMVSLLSACALLDDLYLGICFHGNIIKNGIESEMHVKVALIDMYAKCGSLCT 583
Query: 171 ADFVFSQLKRH--NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
A+ +F L +H + V W I G ++ + F +M E ++ N TF ++L A
Sbjct: 584 AENLF-HLNKHVKDEVSWNVMIAGYLHNGCANEAISTFNQMKLESVRPNLVTFVTILPAV 642
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
+ HA I+++G S + L+DMY K L +E+ F + +K I S
Sbjct: 643 SYLSILRE-AMAFHACIIRMGFISSTLIGNSLIDMYAKSGQLSYSEKCFHEMENKGTI-S 700
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQI 319
WNAML GY +G A LM+ + + +
Sbjct: 701 WNAMLSGYAMHGQGEVALALFSLMQETHVPV 731
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 77/152 (50%), Gaps = 3/152 (1%)
Query: 184 VVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHA 243
++W + I R F + ++ M ++ + YTF+ VLKAC G D G +H
Sbjct: 93 ILWNSLIRAYSRLHLFQEAIKSYQTMSYMGLEPDKYTFTFVLKACTGALDFHE-GVAIHQ 151
Query: 244 NIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYV 303
+I LE D ++ GLVDMY K L +A +VF+ + K++ASWNAM+ G ++
Sbjct: 152 DIASRELECDVFIGTGLVDMYCKMGHLDNARKVFDKM-PGKDVASWNAMISGLSQSSNPC 210
Query: 304 EATKFLYLMK-ASGIQIQESLINDLRIACSSI 334
EA + M+ G++ I +L A S +
Sbjct: 211 EALEIFQRMQMEEGVEPDSVSILNLAPAVSRL 242
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 103/247 (41%), Gaps = 14/247 (5%)
Query: 52 LLLMHVSCGQLDTARQLFD-EMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGH 110
L+ M+ CG L TA LF ++D SW VMI GY+ E I+ F +M
Sbjct: 571 LIDMYAKCGSLCTAENLFHLNKHVKDEVSWNVMIAGYLHNGCANEAISTFNQMKLESVRP 630
Query: 111 MLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
L+ F V +L A + H + ++G + + SLI+ Y K L
Sbjct: 631 NLVTF-----VTILPAVSYLSILREAMAFHACIIRMGFISSTLIGNSLIDMYAKSGQLSY 685
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC-- 228
++ F +++ T+ W A + G F M + +S ++ SVL AC
Sbjct: 686 SEKCFHEMENKGTISWNAMLSGYAMHGQGEVALALFSLMQETHVPVDSVSYISVLSACRH 745
Query: 229 -GGVDDDGNCGRQMHANIVKIGLE-SDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
G + + N + M K LE S E+ C +VD+ G L + + + + + +
Sbjct: 746 AGLIQEGRNIFQSM---TEKHNLEPSMEHYAC-MVDLLGCAGLFDEVLCLIDKMPTEPDA 801
Query: 287 ASWNAML 293
W A+L
Sbjct: 802 QVWGALL 808
>gi|297739749|emb|CBI29931.3| unnamed protein product [Vitis vinifera]
Length = 838
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 88/335 (26%), Positives = 160/335 (47%), Gaps = 17/335 (5%)
Query: 8 ITTD--MYTCLIKECTFQKDSAGAFELLNHIRKRV---NIKPTLLFLNRLLLMHVSCGQL 62
+T D + +++ C+ K F++ I ++ + L N L+ ++ G +
Sbjct: 107 VTPDESTFASVLRACSGGK---APFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHV 163
Query: 63 DTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIV 121
D A+ +F+ + L+D SW MI G E I LF +M H V P ++
Sbjct: 164 DLAKLVFERLFLKDSVSWVAMISGLSQNGREDEAILLFCQM------HKSAVIPTPYVFS 217
Query: 122 CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH 181
VL AC +LG+Q+HG + K G S + +L+ Y ++ L A+ +FS++ R
Sbjct: 218 SVLSACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRR 277
Query: 182 NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQM 241
+ + + + I + G + F++M + +K + T +S+L AC V G G+Q+
Sbjct: 278 DRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASV-GAGYKGKQL 336
Query: 242 HANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGL 301
H+ ++K+G+ SD ++ L+D+Y KC + A F L + +N+ WN MLV Y + G
Sbjct: 337 HSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYF-LTTETENVVLWNVMLVAYGQLGN 395
Query: 302 YVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
E+ M+ G+ + + C+S+ A
Sbjct: 396 LSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGA 430
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 79/284 (27%), Positives = 134/284 (47%), Gaps = 12/284 (4%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
++ + L+ LL ++V C ++TA + F + W VM+V Y + + E
Sbjct: 342 KMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYW 401
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
+F +M +P+ +L+ C ++LG+Q+H + K G N+ + L
Sbjct: 402 IFLQMQIEGLMPNQYTYPS-----ILRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVL 456
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
I+ Y K L+ A + +L+ + V WTA I + F + F+EM + I+ ++
Sbjct: 457 IDMYAKHGELDTARGILQRLREEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDN 516
Query: 219 YTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCG-----LVDMYGKCRLLRDA 273
FSS + AC G+ N G+Q+HA G D + L+ +Y KC + DA
Sbjct: 517 IGFSSAISACAGIQAL-NQGQQIHAQSYISGYSEDLSIGNALASNVLITLYSKCGSIEDA 575
Query: 274 ERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGI 317
+R F + +KN+ SWNAM+ GY ++G EA MK G+
Sbjct: 576 KREF-FEMPEKNVVSWNAMITGYSQHGYGSEAVSLFEEMKQLGL 618
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 83/291 (28%), Positives = 139/291 (47%), Gaps = 15/291 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ ++ G L A Q+F +M RD S+ +I G + LF +M
Sbjct: 252 NALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKM------ 305
Query: 110 HMLLVFPAWIIVC-VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+ + P + V +L AC GKQ+H + K+G S ++ + GSL++ Y K +
Sbjct: 306 QLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDI 365
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
E A F + N V+W +V + G+ + + F +M E + N YT+ S+L+ C
Sbjct: 366 ETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTC 425
Query: 229 ---GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
G +D G Q+H ++K G + + YV L+DMY K L A + + + +++
Sbjct: 426 TSLGALD----LGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRL-REED 480
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+ SW AM+ GY ++ L+ EA K M+ GI+ + AC+ I A
Sbjct: 481 VVSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQA 531
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 75/288 (26%), Positives = 137/288 (47%), Gaps = 8/288 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+RL+ ++++ G++D A +LFD++P + + W +I G + + + LF+ M+
Sbjct: 49 SRLIDIYLAHGEVDNAIKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVT 108
Query: 110 HMLLVFPAWIIVCVLKACV-CTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
F + VL+AC ++ +Q+H + G + + LI+ Y K +
Sbjct: 109 PDESTFAS-----VLRACSGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHV 163
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+ A VF +L ++V W A I + G + F +M + + Y FSSVL AC
Sbjct: 164 DLAKLVFERLFLKDSVSWVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSAC 223
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
+ + G Q+H IVK GL S+ +V LV +Y + L AE++F + + I S
Sbjct: 224 TKI-ELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRI-S 281
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+N+++ G + G A + M+ ++ + L AC+S+ A
Sbjct: 282 YNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGA 329
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 96/218 (44%), Gaps = 19/218 (8%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLF----LNRLLLMHVSCGQLDTARQL 68
Y +++ CT S GA +L I +V IK F + L+ M+ G+LDTAR +
Sbjct: 418 YPSILRTCT----SLGALDLGEQIHTQV-IKSGFQFNVYVCSVLIDMYAKHGELDTARGI 472
Query: 69 FDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACV 128
+ D SW MI GY + E + LF EM + + F + + AC
Sbjct: 473 LQRLREEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSS-----AISACA 527
Query: 129 CTMNMELGKQVHGLLFKLGSSRNISLTGSL-----INFYGKFRCLEDADFVFSQLKRHNT 183
+ G+Q+H + G S ++S+ +L I Y K +EDA F ++ N
Sbjct: 528 GIQALNQGQQIHAQSYISGYSEDLSIGNALASNVLITLYSKCGSIEDAKREFFEMPEKNV 587
Query: 184 VVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTF 221
V W A I + G+ + + F+EM + + N TF
Sbjct: 588 VSWNAMITGYSQHGYGSEAVSLFEEMKQLGLMPNHVTF 625
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 95/217 (43%), Gaps = 1/217 (0%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
+ + C + ++ K++H +FK G L LI+ Y +++A +F + N
Sbjct: 16 LFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVDNAIKLFDDIPSSN 75
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
W I + QV F M E + + TF+SVL+AC G Q+H
Sbjct: 76 VSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRACSGGKAPFQVTEQIH 135
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
A I+ G S V L+D+Y K + A+ VFE + K ++ SW AM+ G +NG
Sbjct: 136 AKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSV-SWVAMISGLSQNGRE 194
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIACSSISASKI 339
EA M S + + + + AC+ I K+
Sbjct: 195 DEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKL 231
>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Vitis vinifera]
Length = 849
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 83/281 (29%), Positives = 143/281 (50%), Gaps = 7/281 (2%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ CG + TAR +FD M + SW MI GYV D + +F +MM +
Sbjct: 317 LVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQ---- 372
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+ ++ L AC ++E G+ VH LL +L ++S+ SLI+ Y K + ++ A
Sbjct: 373 -VEMTNVTVMGALHACADLGDVEQGRFVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIA 431
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
+F L+ V W A I+ + G ++ + F +M + IK +S+T SV+ A +
Sbjct: 432 AEIFENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQLQNIKPDSFTMVSVIPALAEL 491
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
+ +H +++ L+ + +V LVDMY KC + A ++F+++ D++++ +WNA
Sbjct: 492 SVLPQ-AKWIHGLVIRTCLDKNVFVATALVDMYAKCGAVHTARKLFDMM-DERHVTTWNA 549
Query: 292 MLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
M+ GY +GL A + MK I+ E + ACS
Sbjct: 550 MIDGYGTHGLGKAALELFEKMKKEVIKPNEVTFLCVLSACS 590
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/308 (26%), Positives = 143/308 (46%), Gaps = 12/308 (3%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLF-LNRLLLMHVSCGQLDTARQLFDE 71
+T L+K C D E+ H + VN + +F + ++ M+ C ++ A ++FD
Sbjct: 178 FTYLLKVCGDNADLRKGKEI--HCQLIVNGFASNVFAMTGVVNMYAKCRLVEEAYKMFDR 235
Query: 72 MPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI-IVCVLKACVCT 130
MP RD W +I GY + + L M + K P I IV +L A
Sbjct: 236 MPERDLVCWNTIISGYAQNGFGKTALELVLRMQEEGKR------PDSITIVSILPAVADV 289
Query: 131 MNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKI 190
++ +G+ +HG + G ++++ +L++ Y K + A +F ++ V W + I
Sbjct: 290 GSLRIGRSIHGYSMRAGFESFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMI 349
Query: 191 VNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGL 250
+ G F++M E+++ + T L AC + D GR +H + ++ L
Sbjct: 350 DGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHACADLGDVEQ-GRFVHKLLDQLEL 408
Query: 251 ESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLY 310
SD V L+ MY KC+ + A +FE + K + SWNAM++GY +NG EA +
Sbjct: 409 GSDVSVMNSLISMYSKCKRVDIAAEIFENL-QHKTLVSWNAMILGYAQNGRINEAIDYFC 467
Query: 311 LMKASGIQ 318
M+ I+
Sbjct: 468 KMQLQNIK 475
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 117/256 (45%), Gaps = 11/256 (4%)
Query: 47 LFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR 106
LF +L+ + G L A ++F + + + M+ GY + + ++ F M R
Sbjct: 110 LFQTKLVSLFCKFGSLHEAARVFQPIEDKIDELYHTMLKGYARNSSLDDAVSFFCRM--R 167
Query: 107 KKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166
G +V+ +LK C ++ GK++H L G + N+ ++N Y K R
Sbjct: 168 YDGVRPVVYN---FTYLLKVCGDNADLRKGKEIHCQLIVNGFASNVFAMTGVVNMYAKCR 224
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
+E+A +F ++ + V W I + G M E + +S T S+L
Sbjct: 225 LVEEAYKMFDRMPERDLVCWNTIISGYAQNGFGKTALELVLRMQEEGKRPDSITIVSILP 284
Query: 227 ACGGVDDDGN--CGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
A V D G+ GR +H ++ G ES V LVDMY KC + A +F+ + K
Sbjct: 285 A---VADVGSLRIGRSIHGYSMRAGFESFVNVSTALVDMYSKCGSVGTARLIFDRMTGK- 340
Query: 285 NIASWNAMLVGYIRNG 300
+ SWN+M+ GY++NG
Sbjct: 341 TVVSWNSMIDGYVQNG 356
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 100/212 (47%), Gaps = 3/212 (1%)
Query: 128 VCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWT 187
+CT EL Q L+ K G L++ + KF L +A VF ++ ++
Sbjct: 86 LCTSMKEL-HQFIPLIIKNGLYSEHLFQTKLVSLFCKFGSLHEAARVFQPIEDKIDELYH 144
Query: 188 AKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVK 247
+ R + F M + ++ Y F+ +LK CG + D G+++H ++
Sbjct: 145 TMLKGYARNSSLDDAVSFFCRMRYDGVRPVVYNFTYLLKVCGD-NADLRKGKEIHCQLIV 203
Query: 248 IGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATK 307
G S+ + G+V+MY KCRL+ +A ++F+ + + +++ WN ++ GY +NG A +
Sbjct: 204 NGFASNVFAMTGVVNMYAKCRLVEEAYKMFDRMPE-RDLVCWNTIISGYAQNGFGKTALE 262
Query: 308 FLYLMKASGIQIQESLINDLRIACSSISASKI 339
+ M+ G + I + A + + + +I
Sbjct: 263 LVLRMQEEGKRPDSITIVSILPAVADVGSLRI 294
>gi|125544467|gb|EAY90606.1| hypothetical protein OsI_12205 [Oryza sativa Indica Group]
Length = 818
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 80/284 (28%), Positives = 142/284 (50%), Gaps = 10/284 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL M+ CG + AR F+ +P D + MI Y ++ LF +M+
Sbjct: 285 LLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSS---- 340
Query: 112 LLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
V P + + VL+AC + ++ GKQ+H K+G ++ + +L++FY K ++
Sbjct: 341 --VLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDS 398
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
+ +FS L+ N V W +V + G + + F EM ++ T+SSVL+AC
Sbjct: 399 SLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACAS 458
Query: 231 VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWN 290
+ G Q+H +I K +D + L+D Y KC +RDA +VF+ +++ ++I SWN
Sbjct: 459 TASIRHAG-QIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLME-RDIISWN 516
Query: 291 AMLVGYIRNGLYVEATKFLYLMKASGIQIQE-SLINDLRIACSS 333
A++ GY +G +A + M S ++ + + + L + CS+
Sbjct: 517 AIISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCCST 560
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 88/333 (26%), Positives = 155/333 (46%), Gaps = 41/333 (12%)
Query: 11 DMYTCL--IKECTFQKDSAGAFELLNHIRKRVNIKPTLLF-LNRLLLMHVSCGQLDTARQ 67
D + C ++ C + D+ G + H+ +R + LF N LL M+ G L +AR+
Sbjct: 58 DSFACARQLQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARR 117
Query: 68 LFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKAC 127
LFD MP R+ S+ ++ + D++ LF + R +GH + F ++ +LK
Sbjct: 118 LFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRL--RWEGHEVNQF---VLTTMLKLA 172
Query: 128 VCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWT 187
+ L VH +KLG N + LI+ Y + DA+ VF+ + R + VVWT
Sbjct: 173 IAMDAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWT 232
Query: 188 AKIV----NNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQ-MH 242
A + N+C E F R ++ + +C RQ +H
Sbjct: 233 AMVSCYSENDCPENAF-------------RCAQSCSLLAI------------SCARQGIH 267
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
+K +++ +V L+DMY KC ++DA FE+I ++ + M+ Y ++
Sbjct: 268 GCAIKTLNDTEPHVGGALLDMYAKCGDIKDARLAFEMI-PYDDVILLSFMISRYAQSNQN 326
Query: 303 VEATK-FLYLMKASGIQIQESLINDLRIACSSI 334
+A + FL LM++S + + SL + L+ AC+++
Sbjct: 327 EQAFELFLRLMRSSVLPNEYSLSSVLQ-ACTNM 358
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 105/215 (48%), Gaps = 7/215 (3%)
Query: 122 CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH 181
C L A C + +HG K + + G+L++ Y K ++DA F +
Sbjct: 254 CSLLAISCAR-----QGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYD 308
Query: 182 NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQM 241
+ ++ + I + Q F F + R + N Y+ SSVL+AC + + G+Q+
Sbjct: 309 DVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQL-DFGKQI 367
Query: 242 HANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGL 301
H + +KIG ESD +V L+D Y KC + + ++F + D + SWN ++VG+ ++GL
Sbjct: 368 HNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEV-SWNTIVVGFSQSGL 426
Query: 302 YVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
EA M+A+ + + + + AC+S ++
Sbjct: 427 GEEALSVFCEMQAAQMPCTQVTYSSVLRACASTAS 461
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/266 (23%), Positives = 114/266 (42%), Gaps = 12/266 (4%)
Query: 31 ELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFN--SWAVMIVGYV 88
++ NH K + + L N L+ + C +D++ ++F LRD N SW ++VG+
Sbjct: 366 QIHNHAIK-IGHESDLFVGNALMDFYAKCNDMDSSLKIFSS--LRDANEVSWNTIVVGFS 422
Query: 89 DVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGS 148
+E +++F EM + + + + VL+AC T ++ Q+H + K
Sbjct: 423 QSGLGEEALSVFCEMQAAQMPCTQVTYSS-----VLRACASTASIRHAGQIHCSIEKSTF 477
Query: 149 SRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKE 208
+ + + SLI+ Y K + DA VF L + + W A I G F
Sbjct: 478 NNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFDR 537
Query: 209 MGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLE-SDEYVQCGLVDMYGKC 267
M + ++ N TF ++L C + + + G++ S E+ C +V + G+
Sbjct: 538 MNKSNVESNDITFVALLSVCCSTGLVNHGLSLFDSMRIDHGIKPSMEHYTC-IVRLLGRA 596
Query: 268 RLLRDAERVFELIVDKKNIASWNAML 293
L DA + I + W A+L
Sbjct: 597 GRLNDALQFIGDIPSAPSAMVWRALL 622
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 1/117 (0%)
Query: 6 LPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTA 65
+P T Y+ +++ C A ++ I K T++ N L+ + CG + A
Sbjct: 442 MPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIG-NSLIDTYAKCGYIRDA 500
Query: 66 RQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVC 122
++F + RD SW +I GY + + LF M K + F A + VC
Sbjct: 501 LKVFQHLMERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVC 557
>gi|255575883|ref|XP_002528839.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531751|gb|EEF33573.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 393
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 137/258 (53%), Gaps = 7/258 (2%)
Query: 62 LDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIV 121
+D+ R++F+ MP RD SW +I G ++E + + EM G++ L ++ +
Sbjct: 137 VDSVRKVFEMMPKRDLVSWNTVIAGNAHNGMHEEALVMVREM-----GNVNLKPDSFTLS 191
Query: 122 CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH 181
VL +N++ GK++HG + G ++ + SLI+ Y K +ED+ VFS L R
Sbjct: 192 SVLPIFAEYVNVDKGKEIHGYAIRHGLDGDVFIGSSLIDMYAKCTRVEDSLRVFSLLPRR 251
Query: 182 NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQM 241
+ + W + I + F + F++M + +K +FSS+L AC + N GRQ+
Sbjct: 252 DDISWNSIIAGCVQNSLFDEGLRFFRQMLKANVKPRQVSFSSILPACAHL-TTLNLGRQL 310
Query: 242 HANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGL 301
H I+++ +++ ++ LVDMY KC ++ A +F+ + + ++ SW AM++GY +G
Sbjct: 311 HGYILRVRFDNNVFIASSLVDMYAKCGNVKVARWIFDKM-KQHDMVSWTAMIMGYALHGH 369
Query: 302 YVEATKFLYLMKASGIQI 319
+A M+ G+++
Sbjct: 370 ARDAISLFEQMEMRGMKL 387
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 83/158 (52%), Gaps = 5/158 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ C +++ + ++F +P RD SW +I G V + + E + F +M+K
Sbjct: 228 LIDMYAKCTRVEDSLRVFSLLPRRDDISWNSIIAGCVQNSLFDEGLRFFRQMLKANVKPR 287
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+ F + +L AC + LG+Q+HG + ++ N+ + SL++ Y K ++ A
Sbjct: 288 QVSFSS-----ILPACAHLTTLNLGRQLHGYILRVRFDNNVFIASSLVDMYAKCGNVKVA 342
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEM 209
++F ++K+H+ V WTA I+ GH + F++M
Sbjct: 343 RWIFDKMKQHDMVSWTAMIMGYALHGHARDAISLFEQM 380
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
RV + + L+ M+ CG + AR +FD+M D SW MI+GY ++ I+
Sbjct: 316 RVRFDNNVFIASSLVDMYAKCGNVKVARWIFDKMKQHDMVSWTAMIMGYALHGHARDAIS 375
Query: 99 LFAEMMKR--KKGHMLLV 114
LF +M R K G++L V
Sbjct: 376 LFEQMEMRGMKLGNILTV 393
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 90/195 (46%), Gaps = 38/195 (19%)
Query: 114 VFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADF 173
VFP+ V+K+C ++ +LG+ VHG + +LG ++ +L+N Y KF+ L D
Sbjct: 12 VFPS-----VIKSCTLLLDFKLGESVHGCIIRLGVDVDLYTGNALMNMYAKFQSL---DL 63
Query: 174 VFSQLKRHNTVVWTAKIVNNCREGH-FHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVD 232
S+ + T K+++ + + ++ ++F E G + +N +
Sbjct: 64 CSSER------IITHKLLDEMPDRICYDELLHEF-EKGIMGMHQNV-----------SLH 105
Query: 233 DDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRL--LRDAERVFELIVDKKNIASWN 290
D Q+ N G +D+ + + CR + +VFE++ K+++ SWN
Sbjct: 106 PDRKVSPQISVN----GYITDQSYKAS----HNICRTSDVDSVRKVFEMM-PKRDLVSWN 156
Query: 291 AMLVGYIRNGLYVEA 305
++ G NG++ EA
Sbjct: 157 TVIAGNAHNGMHEEA 171
>gi|297824945|ref|XP_002880355.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297326194|gb|EFH56614.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 599
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 85/291 (29%), Positives = 135/291 (46%), Gaps = 37/291 (12%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N ++ V G L AR +FD MP RD SW M++GY + E + F E+ R+ G
Sbjct: 117 NNMVSGFVKSGMLVRARVVFDSMPERDVVSWNTMVIGYAQDGNLHEALWFFKEL--RRSG 174
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK----- 164
+ F + +L ACV + ++L +Q HG + G N+ L+ S+I+ Y K
Sbjct: 175 ---IKFNEFSFAGLLTACVKSRQLQLNQQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQME 231
Query: 165 --FRC------------------------LEDADFVFSQLKRHNTVVWTAKIVNNCREGH 198
RC +E AD +F ++ N V WTA I R+G
Sbjct: 232 SAKRCFDEMTVKDIHIWTTLISGYAKLGDMEAADKLFREMPEKNPVSWTALIAGYVRQGS 291
Query: 199 FHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQC 258
+ F++M R+K +TFSS L A + + G+Q+H +++ + + V
Sbjct: 292 GDLALDLFRKMIAMRVKPEQFTFSSCLCASASIASLRH-GKQIHGYMIRTNVRPNAIVTS 350
Query: 259 GLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFL 309
L+DMY K L +ERVF + DK++ WN M+ ++GL +A + L
Sbjct: 351 SLIDMYSKSGSLEASERVFRICYDKQDCVLWNTMISALAQHGLGHKALQML 401
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 121/267 (45%), Gaps = 31/267 (11%)
Query: 56 HVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEM------------ 103
+ CGQ+++A++ FDEM ++D + W +I GY + D + LF EM
Sbjct: 224 YAKCGQMESAKRCFDEMTVKDIHIWTTLISGYAKLGDMEAADKLFREMPEKNPVSWTALI 283
Query: 104 ---MKRKKGHMLL-VFPAWIIVCV------LKACVCT----MNMELGKQVHGLLFKLGSS 149
+++ G + L +F I + V +C+C ++ GKQ+HG + +
Sbjct: 284 AGYVRQGSGDLALDLFRKMIAMRVKPEQFTFSSCLCASASIASLRHGKQIHGYMIRTNVR 343
Query: 150 RNISLTGSLINFYGKFRCLEDADFVFSQ-LKRHNTVVWTAKIVNNCREGHFHQVFNDFKE 208
N +T SLI+ Y K LE ++ VF + + V+W I + G H+ +
Sbjct: 344 PNAIVTSSLIDMYSKSGSLEASERVFRICYDKQDCVLWNTMISALAQHGLGHKALQMLDD 403
Query: 209 MGRERIKKNSYTFSSVLKAC--GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGK 266
M + R+ N T +L AC G+ ++G R + V+ G+ D+ L+D+ G+
Sbjct: 404 MIKFRVHPNRTTLVVILNACSHSGLVEEGV--RWFESMTVQHGIVPDQEHYACLIDLLGR 461
Query: 267 CRLLRDAERVFELIVDKKNIASWNAML 293
++ E + + + WNA+L
Sbjct: 462 AGCFKELMSKIEEMPFEPDKHIWNAIL 488
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 86/184 (46%), Gaps = 5/184 (2%)
Query: 131 MNMELGKQVHGL-LFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAK 189
M M+ GK + +F RN+ ++++ + K L A VF + + V W
Sbjct: 91 MYMKCGKPIDACKVFDQMHLRNLYSWNNMVSGFVKSGMLVRARVVFDSMPERDVVSWNTM 150
Query: 190 IVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIG 249
++ ++G+ H+ FKE+ R IK N ++F+ +L AC +Q H ++ G
Sbjct: 151 VIGYAQDGNLHEALWFFKELRRSGIKFNEFSFAGLLTACVK-SRQLQLNQQAHGQVLVAG 209
Query: 250 LESDEYVQCGLVDMYGKCRLLRDAERVF-ELIVDKKNIASWNAMLVGYIRNGLYVEATKF 308
S+ + C ++D Y KC + A+R F E+ V K+I W ++ GY + G A K
Sbjct: 210 FLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTV--KDIHIWTTLISGYAKLGDMEAADKL 267
Query: 309 LYLM 312
M
Sbjct: 268 FREM 271
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 255 YVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKA 314
Y +V + K +L A VF+ + ++ ++ SWN M++GY ++G EA F ++
Sbjct: 114 YSWNNMVSGFVKSGMLVRARVVFDSMPER-DVVSWNTMVIGYAQDGNLHEALWFFKELRR 172
Query: 315 SGIQIQESLINDLRIAC 331
SGI+ E L AC
Sbjct: 173 SGIKFNEFSFAGLLTAC 189
>gi|297736155|emb|CBI24193.3| unnamed protein product [Vitis vinifera]
Length = 1083
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 79/256 (30%), Positives = 138/256 (53%), Gaps = 10/256 (3%)
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AW 118
G + AR +FDEM R+ SW+ M+ GYV V Y+E + LF +M L V P +
Sbjct: 322 GHMAHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWG------LGVEPNGF 375
Query: 119 IIVCVLKACVCTMNM-ELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQ 177
++ ++ AC + M + G QVHG + K G ++ + +L++FYG + +A +F +
Sbjct: 376 MVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEE 435
Query: 178 LKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC 237
+ HN V WT+ +V G+ +V N ++ M +E + N TF++V +CG ++D
Sbjct: 436 MPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQ-VL 494
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYI 297
G Q+ +I++ G E V L+ M+ + +A VF+ + ++ +I SWNAM+ Y
Sbjct: 495 GYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHM-NECDIISWNAMISAYA 553
Query: 298 RNGLYVEATKFLYLMK 313
+GL E+ + + M+
Sbjct: 554 HHGLCRESLRCFHWMR 569
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 130/258 (50%), Gaps = 7/258 (2%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ + S G + A++LF+EMP + SW ++VGY D + E + ++ M R++G
Sbjct: 416 LVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRM--RQEG-- 471
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+ V +C + LG QV G + + G ++S+ SLI+ + F +E+A
Sbjct: 472 -VSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEA 530
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
+VF + + + W A I G + F M + NS T SS+L C
Sbjct: 531 CYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVC-SS 589
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
D+ GR +H +VK+GL+S+ + L+ +Y + DAE VF+ + + +++ SWN+
Sbjct: 590 VDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTE-RDLISWNS 648
Query: 292 MLVGYIRNGLYVEATKFL 309
M+ Y+++G ++ K L
Sbjct: 649 MMACYVQDGKCLDGLKIL 666
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 83/360 (23%), Positives = 138/360 (38%), Gaps = 86/360 (23%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ H CG+++ A LF M RD SW MI GY + +F M++
Sbjct: 133 LVDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGG---- 188
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL--- 168
LV + + VL+A + + Q+HG++ +LG +TG LIN Y K L
Sbjct: 189 -LVPDCYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSA 247
Query: 169 --------------------------------------------EDADFVFSQLKRHNTV 184
EDA F +++ N +
Sbjct: 248 KDLRKGMLKKDLFSSTALITGYAHEGIYTMGNALIDMYAKSGEIEDAKRAFDEMEEKNVI 307
Query: 185 VWTAKIVNNCREGHFHQ-----VFND----------------------------FKEMGR 211
WT+ I + G+ H VF++ F +M
Sbjct: 308 SWTSLISGYAKHGYGHMAHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWG 367
Query: 212 ERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLR 271
++ N + +S++ AC + G Q+H +VK G+ D YV LV YG L+
Sbjct: 368 LGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVY 427
Query: 272 DAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
+A+++FE + D N+ SW +++VGY +G E M+ G+ ++ + +C
Sbjct: 428 NAQKLFEEMPD-HNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSC 486
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 79/357 (22%), Positives = 147/357 (41%), Gaps = 45/357 (12%)
Query: 11 DMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFD 70
+ + + C +D +++L HI + + ++ N L+ M S ++ A +FD
Sbjct: 477 NTFATVTSSCGLLEDQVLGYQVLGHIIQ-YGFEDSVSVANSLISMFSSFSSVEEACYVFD 535
Query: 71 EMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCT 130
M D SW MI Y +E + F M H+ + + +L C
Sbjct: 536 HMNECDIISWNAMISAYAHHGLCRESLRCFHWMR-----HLHNETNSTTLSSLLSVCSSV 590
Query: 131 MNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFS-------------- 176
N++ G+ +HGL+ KLG N+ + +L+ Y + EDA+ VF
Sbjct: 591 DNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMM 650
Query: 177 --------------------QLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKK 216
Q+ + + V W A I + ++ +K + + I
Sbjct: 651 ACYVQDGKCLDGLKILAELLQMGKPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPA 710
Query: 217 NSYTFSSVLKACG-GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAER 275
N T S+ V ++G +Q+H ++K+G ESD +V +DMYGKC + D +
Sbjct: 711 NYITMVSLAATANLAVLEEG---QQLHGLVIKLGFESDLHVTNAAMDMYGKCGEMHDVLK 767
Query: 276 VFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+ +++ + SWN ++ + R+G + +A + + M G + L AC+
Sbjct: 768 MLPQPINRSRL-SWNILISAFARHGCFQKARETFHEMLKLGPKPDHVTFVSLLSACN 823
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 70/274 (25%), Positives = 116/274 (42%), Gaps = 53/274 (19%)
Query: 47 LFLN-RLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L LN +L++ +V G + AR +FD MP R SW M+ GY +++ LF++M
Sbjct: 65 LHLNTKLIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRH 124
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
C +KA +L++F+ K
Sbjct: 125 ----------------CGVKA----------------------------NHALVDFHSKC 140
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
+EDA ++F + + V W A I +G F F+ M R + + YT SVL
Sbjct: 141 GKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPDCYTLGSVL 200
Query: 226 KAC---GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282
+A GG+ Q+H I ++G S + V L++ Y K LR A+ + + ++
Sbjct: 201 RASAEGGGLI----IANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKDLRKGML- 255
Query: 283 KKNIASWNAMLVGYIRNGLYVEATKFLYLMKASG 316
KK++ S A++ GY G+Y + + SG
Sbjct: 256 KKDLFSSTALITGYAHEGIYTMGNALIDMYAKSG 289
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 67/275 (24%), Positives = 112/275 (40%), Gaps = 32/275 (11%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK- 108
N LL ++ G+ + A +F M RD SW M+ YV + + + AE+++ K
Sbjct: 616 NTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKP 675
Query: 109 ----------GHMLLVFPA-----------------WIIVCVLKACVCTMNMELGKQVHG 141
GH P +I + L A +E G+Q+HG
Sbjct: 676 DRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSLAATANLAVLEEGQQLHG 735
Query: 142 LLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQ 201
L+ KLG ++ +T + ++ YGK + D + Q + + W I R G F +
Sbjct: 736 LVIKLGFESDLHVTNAAMDMYGKCGEMHDVLKMLPQPINRSRLSWNILISAFARHGCFQK 795
Query: 202 VFNDFKEMGRERIKKNSYTFSSVLKAC--GGVDDDGNCGRQMHANIVKIGLESDEYVQCG 259
F EM + K + TF S+L AC GG+ D+G + E+ C
Sbjct: 796 ARETFHEMLKLGPKPDHVTFVSLLSACNHGGLVDEGLAYYDSMTREFGV-FPGIEHCVC- 853
Query: 260 LVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLV 294
++D+ G+ L AE + + N +W ++L
Sbjct: 854 IIDLLGRSGRLSHAEGFIKEMPVPPNDLAWRSLLA 888
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 69/179 (38%), Gaps = 41/179 (22%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
+L+ C+ + G +H L G ++ L LI FY K + A VF + +
Sbjct: 36 ILQLCIDKKAKKQGHLIHTHLITNGFGSDLHLNTKLIIFYVKVGDVIAARNVFDGMPERS 95
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
V WTA + + G F + F F +M +K N H
Sbjct: 96 VVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGVKAN------------------------H 131
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGL 301
A LVD + KC + DA +F +++ +++ SWNAM+ GY G
Sbjct: 132 A----------------LVDFHSKCGKMEDASYLFGTMME-RDVVSWNAMIGGYAVQGF 173
Score = 42.0 bits (97), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYI 297
G +H +++ G SD ++ L+ Y K + A VF+ + ++ ++ SW AM+ GY
Sbjct: 49 GHLIHTHLITNGFGSDLHLNTKLIIFYVKVGDVIAARNVFDGMPER-SVVSWTAMVSGYS 107
Query: 298 RNGLYVEATKFLYLMKASGIQIQESLIN 325
+NG + +A M+ G++ +L++
Sbjct: 108 QNGRFEKAFVLFSDMRHCGVKANHALVD 135
>gi|449468888|ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g13230, mitochondrial-like [Cucumis sativus]
gi|449515059|ref|XP_004164567.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g13230, mitochondrial-like [Cucumis sativus]
Length = 721
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 84/283 (29%), Positives = 139/283 (49%), Gaps = 9/283 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL ++ CG D A + F +MP D W+ MI + ++ + +F +M +
Sbjct: 188 LLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMRRA----- 242
Query: 112 LLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
V P + VL+A +++L K +HG K G S ++ ++ +L+ Y K C+E
Sbjct: 243 -FVIPNQFTFSSVLQASADIESLDLSKTIHGHALKAGLSTDVFVSNALMACYAKCGCIEQ 301
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
+ +F L N V W IV+ + G + + F M R +++ T+SS+L+AC
Sbjct: 302 SMELFEALSDRNDVSWNTIIVSYVQLGDGERALSLFSNMLRYQVQATEVTYSSILRACAT 361
Query: 231 VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWN 290
+ G Q+H K D V L+DMY KC ++DA +F+++ D ++ SWN
Sbjct: 362 L-AALELGLQVHCLTAKTIYGQDVAVGNALIDMYAKCGSIKDARFMFDML-DLRDKVSWN 419
Query: 291 AMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSS 333
A++ GY +GL VEA K LMK + + E + ACS+
Sbjct: 420 AIICGYSMHGLGVEAIKMFNLMKETKCKPDELTFVGVLSACSN 462
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/246 (30%), Positives = 123/246 (50%), Gaps = 7/246 (2%)
Query: 68 LFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKAC 127
+FDEMP R+ S+ +I GY + E LFA + +GH L F + VLK
Sbjct: 2 VFDEMPERNTVSFVTLIHGYAQSNKFIEAFELFARL--HGEGHELNPF---VFTTVLKLL 56
Query: 128 VCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWT 187
V ELG+ VHG + K+G N + +LI+ Y C+ A VF ++ + V WT
Sbjct: 57 VSMEWAELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWT 116
Query: 188 AKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVK 247
I + F + F +M K N++TF+ VLKAC G+ + + G+ +H +++K
Sbjct: 117 GMIASYAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGL-QNFDAGKTVHCSVLK 175
Query: 248 IGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATK 307
E D YV GL+++Y +C DA R F + K ++ W+ M+ + ++G +A +
Sbjct: 176 TNYERDLYVGVGLLELYTRCGDNDDAWRAFG-DMPKNDVIPWSFMISRFAQSGQSEKALE 234
Query: 308 FLYLMK 313
M+
Sbjct: 235 IFCQMR 240
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 75/277 (27%), Positives = 134/277 (48%), Gaps = 7/277 (2%)
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI 119
G + AR++FDE+ +D SW MI Y + + E + F++M R G F
Sbjct: 95 GCVSMAREVFDEISSKDMVSWTGMIASYAENDCFSEALEFFSQM--RVAGFKPNNF---T 149
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
VLKAC+ N + GK VH + K R++ + L+ Y + +DA F +
Sbjct: 150 FAGVLKACLGLQNFDAGKTVHCSVLKTNYERDLYVGVGLLELYTRCGDNDDAWRAFGDMP 209
Query: 180 RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGR 239
+++ + W+ I + G + F +M R + N +TFSSVL+A + + + +
Sbjct: 210 KNDVIPWSFMISRFAQSGQSEKALEIFCQMRRAFVIPNQFTFSSVLQASADI-ESLDLSK 268
Query: 240 QMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRN 299
+H + +K GL +D +V L+ Y KC + + +FE + D+ ++ SWN ++V Y++
Sbjct: 269 TIHGHALKAGLSTDVFVSNALMACYAKCGCIEQSMELFEALSDRNDV-SWNTIIVSYVQL 327
Query: 300 GLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
G A M +Q E + + AC++++A
Sbjct: 328 GDGERALSLFSNMLRYQVQATEVTYSSILRACATLAA 364
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 68/260 (26%), Positives = 125/260 (48%), Gaps = 15/260 (5%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
+ + + N L+ + CG ++ + +LF+ + R+ SW +IV YV + D + ++
Sbjct: 276 KAGLSTDVFVSNALMACYAKCGCIEQSMELFEALSDRNDVSWNTIIVSYVQLGDGERALS 335
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
LF+ M++ + + + + +L+AC +ELG QVH L K +++++ +L
Sbjct: 336 LFSNMLRYQVQATEVTYSS-----ILRACATLAALELGLQVHCLTAKTIYGQDVAVGNAL 390
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
I+ Y K ++DA F+F L + V W A I G + F M + K +
Sbjct: 391 IDMYAKCGSIKDARFMFDMLDLRDKVSWNAIICGYSMHGLGVEAIKMFNLMKETKCKPDE 450
Query: 219 YTFSSVLKAC---GGVDDDGNCGRQMHANIVK-IGLES-DEYVQCGLVDMYGKCRLLRDA 273
TF VL AC G +D+ G+Q ++ + G+E E+ C +V + G+ L A
Sbjct: 451 LTFVGVLSACSNTGRLDE----GKQYFTSMKQDYGIEPCMEHYTC-MVWLMGRSGNLDQA 505
Query: 274 ERVFELIVDKKNIASWNAML 293
+ E I + ++ W A+L
Sbjct: 506 VKFIEDIPFEPSVMIWRALL 525
>gi|357166812|ref|XP_003580863.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15130-like [Brachypodium distachyon]
Length = 707
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 91/300 (30%), Positives = 141/300 (47%), Gaps = 11/300 (3%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R + + N L+L++ G++ AR++FD R+ +W MI GY ++ +
Sbjct: 134 RAGFEGHHVVANSLVLLYSKGGRIGDARRVFDGTVFRNLVTWNAMISGYAHAGHGRDSLL 193
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLG--SSRNISLTG 156
+F EM +R++ + +LKAC G QVH + G ++ N L G
Sbjct: 194 VFREMQQRRQEEEDHQPDEFTFASLLKACGSLGAAREGAQVHAAMVIRGVSTASNAILAG 253
Query: 157 SLINFYGKFRCL-EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIK 215
+L++ Y K RCL A VF++L++ N + WT IV + +EG + F ++
Sbjct: 254 ALLDMYVKCRCLLPMAMQVFNRLEQKNAIQWTTVIVGHAQEGQVKEAMELFGRFWSSGVR 313
Query: 216 KNSYTFSSVLKACGGVDDD---GNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRD 272
+ + SSV+ GV D GRQ+H VK D V L+DMY KC L +
Sbjct: 314 ADGHVLSSVV----GVFADFALVEQGRQVHCYTVKTPAGLDVSVANSLIDMYHKCGLTDE 369
Query: 273 AERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
A R F V +N+ SW AM+ G ++G EA M+A G++ E L ACS
Sbjct: 370 AARRFRE-VPARNVVSWTAMINGLGKHGHGQEAIHMFEEMRAEGVEPDEVAYLALLSACS 428
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 87/287 (30%), Positives = 140/287 (48%), Gaps = 16/287 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ CG+L A ++F MP R+ SW ++VG++ D +EC+ L M
Sbjct: 43 NNLIDMYAKCGELRMAGEVFGGMPERNVVSWTALMVGFLRHGDARECLRLLGAMRS---- 98
Query: 110 HMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+ V P + + LKAC +M G +HG + G + + SL+ Y K +
Sbjct: 99 -LSDVAPNEFTLSASLKACGVVGDMAAGVWIHGACVRAGFEGHHVVANSLVLLYSKGGRI 157
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKK-----NSYTFSS 223
DA VF N V W A I GH F+EM + R ++ + +TF+S
Sbjct: 158 GDARRVFDGTVFRNLVTWNAMISGYAHAGHGRDSLLVFREMQQRRQEEEDHQPDEFTFAS 217
Query: 224 VLKACGGVDDDGNCGRQMHANIVKIGLE--SDEYVQCGLVDMYGKCR-LLRDAERVFELI 280
+LKACG + G Q+HA +V G+ S+ + L+DMY KCR LL A +VF +
Sbjct: 218 LLKACGSL-GAAREGAQVHAAMVIRGVSTASNAILAGALLDMYVKCRCLLPMAMQVFNRL 276
Query: 281 VDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDL 327
++KN W ++VG+ + G EA + +SG++ +++ +
Sbjct: 277 -EQKNAIQWTTVIVGHAQEGQVKEAMELFGRFWSSGVRADGHVLSSV 322
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 71/226 (31%), Positives = 101/226 (44%), Gaps = 8/226 (3%)
Query: 119 IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL 178
+I +L+A + + G Q+HG L KLG + L +LI+ Y K L A VF +
Sbjct: 6 MIADMLRASAASSAIHGGAQLHGALLKLGFGSDTMLGNNLIDMYAKCGELRMAGEVFGGM 65
Query: 179 KRHNTVVWTAKIVNNCREGHFHQVFNDFKEM-GRERIKKNSYTFSSVLKACGGVDDDGNC 237
N V WTA +V R G + M + N +T S+ LKACG V D
Sbjct: 66 PERNVVSWTALMVGFLRHGDARECLRLLGAMRSLSDVAPNEFTLSASLKACGVVGDMA-A 124
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYI 297
G +H V+ G E V LV +Y K + DA RVF+ V +N+ +WNAM+ GY
Sbjct: 125 GVWIHGACVRAGFEGHHVVANSLVLLYSKGGRIGDARRVFDGTV-FRNLVTWNAMISGYA 183
Query: 298 RNGLYVEATKFLYLMK-----ASGIQIQESLINDLRIACSSISASK 338
G ++ M+ Q E L AC S+ A++
Sbjct: 184 HAGHGRDSLLVFREMQQRRQEEEDHQPDEFTFASLLKACGSLGAAR 229
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 71/291 (24%), Positives = 121/291 (41%), Gaps = 23/291 (7%)
Query: 13 YTCLIKEC-TFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCG-QLDTARQLFD 70
+ L+K C + GA + + V+ + LL M+V C L A Q+F+
Sbjct: 215 FASLLKACGSLGAAREGAQVHAAMVIRGVSTASNAILAGALLDMYVKCRCLLPMAMQVFN 274
Query: 71 EMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK---RKKGHMLL----VFPAWIIVCV 123
+ ++ W +IVG+ +E + LF R GH+L VF + +V
Sbjct: 275 RLEQKNAIQWTTVIVGHAQEGQVKEAMELFGRFWSSGVRADGHVLSSVVGVFADFALV-- 332
Query: 124 LKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNT 183
E G+QVH K + ++S+ SLI+ Y K ++A F ++ N
Sbjct: 333 ----------EQGRQVHCYTVKTPAGLDVSVANSLIDMYHKCGLTDEAARRFREVPARNV 382
Query: 184 VVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHA 243
V WTA I + GH + + F+EM E ++ + + ++L AC C R A
Sbjct: 383 VSWTAMINGLGKHGHGQEAIHMFEEMRAEGVEPDEVAYLALLSACSHSGLVEECRRYFSA 442
Query: 244 NIVKIGLES-DEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
L E+ C +VD+ G+ L +A+ + + + W +L
Sbjct: 443 IRHDRRLRPRAEHYAC-MVDLLGRAGELSEAKDLVATMPMAPTVGVWQTLL 492
>gi|356546044|ref|XP_003541442.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g14730-like [Glycine max]
Length = 628
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 93/333 (27%), Positives = 165/333 (49%), Gaps = 13/333 (3%)
Query: 9 TTDMYTCL--IKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTAR 66
T D+ TC+ ++ C + + EL H+ K L + L+ M+ C +D +
Sbjct: 26 TYDLGTCIATLQSCAHNANLSKGKELHTHLLKNAFFGSPLA-ITSLINMYSKCSLIDHSL 84
Query: 67 QLFDEMPLRDFNSWA--VMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVL 124
++F+ + N +A +I G++ A Q + L+ +M FP CV+
Sbjct: 85 RVFNFPTHHNKNVFAYNALIAGFLANALPQRALALYNQMRHLGIAPDKFTFP-----CVI 139
Query: 125 KACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTV 184
+AC + + ++HGL+FK+G ++ + +L+N Y KFR + +A VF +L + V
Sbjct: 140 RACGDDDDGFVVTKIHGLMFKVGLELDVFVGSALVNTYLKFRFVGEAYRVFEELPVRDVV 199
Query: 185 VWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHAN 244
+W A + + G F + F+ MG + YT + VL + D N GR +H
Sbjct: 200 LWNAMVNGFAQIGRFEEALGVFRRMGGNGVVPCRYTVTGVLSIFSVMGDFDN-GRAVHGF 258
Query: 245 IVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVE 304
+ K+G ES V L+DMYGKC+ + DA VFE++ D+ +I SWN+++ + R G +
Sbjct: 259 VTKMGYESGVVVSNALIDMYGKCKCVGDALSVFEMM-DEIDIFSWNSIMSVHERCGDHYG 317
Query: 305 ATK-FLYLMKASGIQIQESLINDLRIACSSISA 336
+ F +M +S +Q + + AC+ ++A
Sbjct: 318 TLRLFDRMMGSSRVQPDLVTVTTVLPACTHLAA 350
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 90/344 (26%), Positives = 163/344 (47%), Gaps = 19/344 (5%)
Query: 6 LPITTDMYT--CLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLD 63
L I D +T C+I+ C D ++ + +V ++ + + L+ ++ +
Sbjct: 126 LGIAPDKFTFPCVIRACG-DDDDGFVVTKIHGLMFKVGLELDVFVGSALVNTYLKFRFVG 184
Query: 64 TARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCV 123
A ++F+E+P+RD W M+ G+ + ++E + +F R+ G +V + + V
Sbjct: 185 EAYRVFEELPVRDVVLWNAMVNGFAQIGRFEEALGVF-----RRMGGNGVVPCRYTVTGV 239
Query: 124 LKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNT 183
L + + G+ VHG + K+G + ++ +LI+ YGK +C+ DA VF + +
Sbjct: 240 LSIFSVMGDFDNGRAVHGFVTKMGYESGVVVSNALIDMYGKCKCVGDALSVFEMMDEIDI 299
Query: 184 VVWTAKIVNNCREGHFHQVFNDF-KEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
W + + + R G + F + MG R++ + T ++VL AC + + GR++H
Sbjct: 300 FSWNSIMSVHERCGDHYGTLRLFDRMMGSSRVQPDLVTVTTVLPACTHLAALMH-GREIH 358
Query: 243 ANIVKIGLESDE--------YVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLV 294
+V GL +E + L+DMY KC +RDA VF + + +K++ASWN M+
Sbjct: 359 GYMVVNGLAKEESHDVFDDVLLNNALMDMYAKCGNMRDARMVF-VNMREKDVASWNIMIT 417
Query: 295 GYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASK 338
GY +G EA M + + E L ACS K
Sbjct: 418 GYGMHGYGGEALDIFSRMCQAQMVPNEISFVGLLSACSHAGMVK 461
>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
[Vitis vinifera]
Length = 698
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 87/321 (27%), Positives = 155/321 (48%), Gaps = 10/321 (3%)
Query: 13 YTCLIKECT-FQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDE 71
+ C++K C+ Q S G E ++ + + N L+ M+ +CG+++ AR++FDE
Sbjct: 127 FPCILKVCSRLQALSEG--EQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDE 184
Query: 72 MPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTM 131
M R+ +W M GY +++E + LF EM++ + + F +V VL AC
Sbjct: 185 MSERNVRTWNSMFAGYTKSGNWEEVVKLFHEMLE-----LDIRFDEVTLVSVLTACGRLA 239
Query: 132 NMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIV 191
++ELG+ ++ + + G N +L SL++ Y K ++ A +F Q+ R + V W+A I
Sbjct: 240 DLELGEWINRYVEEKGLKGNPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMIS 299
Query: 192 NNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLE 251
+ + + F EM + I N T S+L +C V G+ +H I K ++
Sbjct: 300 GYSQASRCREALDLFHEMQKANIDPNEITMVSILSSCA-VLGALETGKWVHFFIKKKRMK 358
Query: 252 SDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYL 311
+ L+D Y KC + + VF + KN+ SW ++ G NG +A ++ YL
Sbjct: 359 LTVTLGTALMDFYAKCGSVESSIEVFGKM-PVKNVLSWTVLIQGLASNGQGKKALEYFYL 417
Query: 312 MKASGIQIQESLINDLRIACS 332
M ++ + + ACS
Sbjct: 418 MLEKNVEPNDVTFIGVLSACS 438
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 86/327 (26%), Positives = 155/327 (47%), Gaps = 17/327 (5%)
Query: 14 TCLIKECTFQKDSAGAFELLNH-IRKRVNIKPTL---LFLNRLLLMHVSCGQLDTARQLF 69
T ++++C +D E+ H I+ R+ +KP + L + +L+ S +D A +F
Sbjct: 28 TLILEQCKTIRD---LNEIHAHLIKTRLLLKPKVAENLLESAAILLPTS---MDYAVSIF 81
Query: 70 DEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVC 129
++ D ++ +MI G+ E I LF EM + FP C+LK C
Sbjct: 82 RQIDEPDSPAYNIMIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFP-----CILKVCSR 136
Query: 130 TMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAK 189
+ G+Q+H L+ K G + + +LI+ Y +E A VF ++ N W +
Sbjct: 137 LQALSEGEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRTWNSM 196
Query: 190 IVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIG 249
+ G++ +V F EM I+ + T SVL ACG + D G ++ + + G
Sbjct: 197 FAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRL-ADLELGEWINRYVEEKG 255
Query: 250 LESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFL 309
L+ + + LVDMY KC + A R+F+ + D++++ +W+AM+ GY + EA
Sbjct: 256 LKGNPTLITSLVDMYAKCGQVDTARRLFDQM-DRRDVVAWSAMISGYSQASRCREALDLF 314
Query: 310 YLMKASGIQIQESLINDLRIACSSISA 336
+ M+ + I E + + +C+ + A
Sbjct: 315 HEMQKANIDPNEITMVSILSSCAVLGA 341
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 79/271 (29%), Positives = 130/271 (47%), Gaps = 17/271 (6%)
Query: 31 ELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDV 90
E +N + +K + L+ M+ CGQ+DTAR+LFD+M RD +W+ MI GY
Sbjct: 245 EWINRYVEEKGLKGNPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQA 304
Query: 91 ADYQECITLFAEMMKRKKGHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSS 149
+ +E + LF EM K + P I +V +L +C +E GK VH + K
Sbjct: 305 SRCREALDLFHEMQKAN------IDPNEITMVSILSSCAVLGALETGKWVHFFIKKKRMK 358
Query: 150 RNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEM 209
++L +L++FY K +E + VF ++ N + WT I G + F M
Sbjct: 359 LTVTLGTALMDFYAKCGSVESSIEVFGKMPVKNVLSWTVLIQGLASNGQGKKALEYFYLM 418
Query: 210 GRERIKKNSYTFSSVLKAC---GGVDDDGNCGRQMHANIVK-IGLESD-EYVQCGLVDMY 264
+ ++ N TF VL AC G VD+ GR + ++ + G+E E+ C +VD+
Sbjct: 419 LEKNVEPNDVTFIGVLSACSHAGLVDE----GRDLFVSMSRDFGIEPRIEHYGC-MVDIL 473
Query: 265 GKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
G+ L+ +A + + + + N W +L
Sbjct: 474 GRAGLIEEAFQFIKNMPIQPNAVIWRTLLAS 504
>gi|297796453|ref|XP_002866111.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297311946|gb|EFH42370.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 829
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 89/318 (27%), Positives = 156/318 (49%), Gaps = 16/318 (5%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFL-NRLLLMHVSC 59
MD L I ++Y +++ C +++D ++ I K + ++ +L++ + C
Sbjct: 61 MDFRNLRIGPEIYGEILQGCVYERDLCTGKQIHARILKNGDFYAKNEYIETKLVIFYAKC 120
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AW 118
LD A LF ++ +R+ SWA +I + + + F EM++ + +FP +
Sbjct: 121 DALDIAEVLFTKLRVRNVFSWAAIIGVKCRIGLCEGALMGFVEMLENE------IFPDNF 174
Query: 119 IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL 178
++ V KAC G+ VHG + K G + + SL + YGK L+DA VF ++
Sbjct: 175 VVPNVCKACGALQWSRFGRGVHGYVVKAGLEDCVFVASSLADMYGKCGVLDDARKVFDEI 234
Query: 179 KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC---GGVDDDG 235
N V W A +V + G + F +M +E ++ T S+ L A GGV++
Sbjct: 235 PERNVVAWNALMVGYVQNGMNEEAIRLFSDMRKEGVEPTRVTVSTCLSASANMGGVEE-- 292
Query: 236 NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
G+Q HA + GLE D + L++ Y K L+ AE VF+ ++D K++ +WN ++ G
Sbjct: 293 --GKQSHAIAIVNGLELDNILGTSLLNFYCKVGLIEYAEMVFDRMID-KDVVTWNLIISG 349
Query: 296 YIRNGLYVEATKFLYLMK 313
Y++ GL A LM+
Sbjct: 350 YVQQGLVENAIYMCQLMR 367
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 122/230 (53%), Gaps = 9/230 (3%)
Query: 91 ADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGS-- 148
+ +E ++L EM R L + P I +L+ CV ++ GKQ+H + K G
Sbjct: 49 GEIKEALSLVTEMDFRN----LRIGPE-IYGEILQGCVYERDLCTGKQIHARILKNGDFY 103
Query: 149 SRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKE 208
++N + L+ FY K L+ A+ +F++L+ N W A I CR G F E
Sbjct: 104 AKNEYIETKLVIFYAKCDALDIAEVLFTKLRVRNVFSWAAIIGVKCRIGLCEGALMGFVE 163
Query: 209 MGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCR 268
M I +++ +V KACG + GR +H +VK GLE +V L DMYGKC
Sbjct: 164 MLENEIFPDNFVVPNVCKACGALQWS-RFGRGVHGYVVKAGLEDCVFVASSLADMYGKCG 222
Query: 269 LLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
+L DA +VF+ I ++N+ +WNA++VGY++NG+ EA + M+ G++
Sbjct: 223 VLDDARKVFDEI-PERNVVAWNALMVGYVQNGMNEEAIRLFSDMRKEGVE 271
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/264 (30%), Positives = 133/264 (50%), Gaps = 9/264 (3%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+ CG LD AR++FDE+P R+ +W ++VGYV +E I LF++M RK+G V
Sbjct: 217 MYGKCGVLDDARKVFDEIPERNVVAWNALMVGYVQNGMNEEAIRLFSDM--RKEG----V 270
Query: 115 FPAWIIVCV-LKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADF 173
P + V L A +E GKQ H + G + L SL+NFY K +E A+
Sbjct: 271 EPTRVTVSTCLSASANMGGVEEGKQSHAIAIVNGLELDNILGTSLLNFYCKVGLIEYAEM 330
Query: 174 VFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDD 233
VF ++ + V W I ++G + M E++K + T ++++ A +
Sbjct: 331 VFDRMIDKDVVTWNLIISGYVQQGLVENAIYMCQLMRLEKLKYDCVTLATLMSAAARTQN 390
Query: 234 DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
G+++ ++ ESD + ++DMY KC + DA++VF+ + K++ WN +L
Sbjct: 391 L-KLGKEVQCYCIRHSFESDIVLASTVMDMYAKCGSIVDAKKVFDSTAE-KDLILWNTLL 448
Query: 294 VGYIRNGLYVEATKFLYLMKASGI 317
Y +GL E + Y M+ G+
Sbjct: 449 AAYAESGLSGEGLRLFYGMQLEGV 472
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 63/285 (22%), Positives = 117/285 (41%), Gaps = 38/285 (13%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL + G ++ A +FD M +D +W ++I GYV + I + ++M+ +K
Sbjct: 315 LLNFYCKVGLIEYAEMVFDRMIDKDVVTWNLIISGYVQQGLVENAIYM-CQLMRLEK--- 370
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
L + + ++ A T N++LGK+V + +I L ++++ Y K + DA
Sbjct: 371 -LKYDCVTLATLMSAAARTQNLKLGKEVQCYCIRHSFESDIVLASTVMDMYAKCGSIVDA 429
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
VF + ++W + G + F M E + N T+
Sbjct: 430 KKVFDSTAEKDLILWNTLLAAYAESGLSGEGLRLFYGMQLEGVPPNVITW---------- 479
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
N++ + L ++ G VD L + +F N+ SW
Sbjct: 480 ------------NLIILSL-----LRNGEVDEAKDMFLQMQSSGIF------PNLISWTT 516
Query: 292 MLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
M+ G ++NG EA FL M+ SG++ I AC+++++
Sbjct: 517 MMNGMVQNGCSEEAILFLRKMQESGLRPNAVSITVALSACANLAS 561
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 92/214 (42%), Gaps = 10/214 (4%)
Query: 42 IKPTLLFLNRLLLMHVSCGQLDTARQLFDEMP----LRDFNSWAVMIVGYVDVADYQECI 97
+ P ++ N ++L + G++D A+ +F +M + SW M+ G V +E I
Sbjct: 472 VPPNVITWNLIILSLLRNGEVDEAKDMFLQMQSSGIFPNLISWTTMMNGMVQNGCSEEAI 531
Query: 98 TLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFK-LGSSRNISLTG 156
+M + L A I L AC ++ G+ +HG + + L S ++S+
Sbjct: 532 LFLRKMQESG-----LRPNAVSITVALSACANLASLHFGRSIHGYIIRNLQHSSSVSIET 586
Query: 157 SLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKK 216
SL++ Y K + A+ VF ++ A I G+ + ++ + +K
Sbjct: 587 SLVDMYAKCGDINKAEKVFGSKLYSELPLYNAMISAYALYGNLKEAIALYRSLEGVGLKP 646
Query: 217 NSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGL 250
++ T ++VL AC D+ + + K G+
Sbjct: 647 DNITITNVLSACNHAGDNNQATEIVTEMVSKHGM 680
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 60/295 (20%), Positives = 115/295 (38%), Gaps = 39/295 (13%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R + + ++ + ++ M+ CG + A+++FD +D W ++ Y + E +
Sbjct: 403 RHSFESDIVLASTVMDMYAKCGSIVDAKKVFDSTAEKDLILWNTLLAAYAESGLSGEGLR 462
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
LF G L P +I L N E+ + + ++ SS
Sbjct: 463 LF-------YGMQLEGVPPNVITWNLIILSLLRNGEV-DEAKDMFLQMQSS--------- 505
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
G F N + WT + + G + ++M ++ N+
Sbjct: 506 ----GIF---------------PNLISWTTMMNGMVQNGCSEEAILFLRKMQESGLRPNA 546
Query: 219 YTFSSVLKACGGVDDDGNCGRQMHANIVK-IGLESDEYVQCGLVDMYGKCRLLRDAERVF 277
+ + L AC + + GR +H I++ + S ++ LVDMY KC + AE+VF
Sbjct: 547 VSITVALSACANLASL-HFGRSIHGYIIRNLQHSSSVSIETSLVDMYAKCGDINKAEKVF 605
Query: 278 ELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+ + +NAM+ Y G EA ++ G++ I ++ AC+
Sbjct: 606 GSKL-YSELPLYNAMISAYALYGNLKEAIALYRSLEGVGLKPDNITITNVLSACN 659
>gi|147771902|emb|CAN75707.1| hypothetical protein VITISV_031420 [Vitis vinifera]
Length = 708
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 86/292 (29%), Positives = 148/292 (50%), Gaps = 12/292 (4%)
Query: 12 MYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCG-QLDTARQLFD 70
+Y L++ CT ++ H+ K ++ N LL ++ G R++FD
Sbjct: 120 LYASLLQTCTKVLAFNHGLQIHAHVIKS-GLEFDRFVGNSLLTLYFKLGTDFPETRKVFD 178
Query: 71 EMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCVLKACVC 129
+ ++D SW MI GYV V + LF +M+ V P A+ + V+KAC
Sbjct: 179 GLFVKDVISWTSMISGYVRVGKPMNSLELFWKMLAYG------VEPNAFTLSAVIKACSE 232
Query: 130 TMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAK 189
+++LG+ HG++ G N + +LI+ +G+ L+DA +F +L + + WT+
Sbjct: 233 LGDLKLGRIFHGVVLGRGFDSNYVIASALIDMHGRNCALDDARQLFDELLEPDAICWTSI 292
Query: 190 IVNNCREGHFHQVFNDFKEMGRER-IKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKI 248
I R F + F M R+ + + +TF +VL ACG + G+++HA ++
Sbjct: 293 ISALTRNDFFDEALRFFYSMQRDHGMCPDGFTFGTVLTACGNLGRLKQ-GKEVHAKVITT 351
Query: 249 GLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
G + V+ LVDMYGKC + +++R+F+ + KN SW+A+L GY +NG
Sbjct: 352 GFCGNVVVESSLVDMYGKCGSVGESQRIFDRM-PIKNSVSWSALLGGYCQNG 402
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 80/281 (28%), Positives = 135/281 (48%), Gaps = 10/281 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ MH LD ARQLFDE+ D W +I + E + F M +R G
Sbjct: 261 LIDMHGRNCALDDARQLFDELLEPDAICWTSIISALTRNDFFDEALRFFYSM-QRDHG-- 317
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+ + VL AC ++ GK+VH + G N+ + SL++ YGK + ++
Sbjct: 318 -MCPDGFTFGTVLTACGNLGRLKQGKEVHAKVITTGFCGNVVVESSLVDMYGKCGSVGES 376
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
+F ++ N+V W+A + C+ G F V F++M K + Y F ++L+ C G+
Sbjct: 377 QRIFDRMPIKNSVSWSALLGGYCQNGDFKSVIQIFRKME----KVDLYCFGTILRTCAGL 432
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
G+++H ++ G D V+ LVD+Y KC + A+ +F+ + +N+ +WN+
Sbjct: 433 AAVRQ-GKEVHCQYIRKGGWRDVIVESALVDLYAKCGCIEYAQTIFDQM-PVRNLITWNS 490
Query: 292 MLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
M+ G+ +NG EA + M GI+ + ACS
Sbjct: 491 MIGGFAQNGRGEEALRIFNQMVKEGIKPDYISFIGILFACS 531
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 125/252 (49%), Gaps = 25/252 (9%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+ L+ M+ CG + ++++FD MP+++ SW+ ++ GY D++ I +F +M K
Sbjct: 361 SSLVDMYGKCGSVGESQRIFDRMPIKNSVSWSALLGGYCQNGDFKSVIQIFRKMEK---- 416
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ +L+ C + GK+VH + G R++ + +L++ Y K C+E
Sbjct: 417 -----VDLYCFGTILRTCAGLAAVRQGKEVHCQYIRKGGWRDVIVESALVDLYAKCGCIE 471
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC- 228
A +F Q+ N + W + I + G + F +M +E IK + +F +L AC
Sbjct: 472 YAQTIFDQMPVRNLITWNSMIGGFAQNGRGEEALRIFNQMVKEGIKPDYISFIGILFACS 531
Query: 229 --GGVDDDGNCGRQMHANI-----VKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIV 281
G VD+ GR+ ++ +K+G+ E+ C +VD+ G+ LL +AE + E
Sbjct: 532 HRGLVDE----GREYFISMTKDYGIKVGI---EHYSC-MVDLLGRAGLLEEAEILIETSD 583
Query: 282 DKKNIASWNAML 293
+ + + W A+L
Sbjct: 584 FRDDSSLWAALL 595
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 76/154 (49%), Gaps = 3/154 (1%)
Query: 188 AKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVK 247
+KI+ C+ G K + I ++S+L+ C V N G Q+HA+++K
Sbjct: 88 SKILQLCKSGELSGALQLLKSIDPGEISAKPVLYASLLQTCTKVLAF-NHGLQIHAHVIK 146
Query: 248 IGLESDEYVQCGLVDMYGKCRL-LRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEAT 306
GLE D +V L+ +Y K + +VF+ + K++ SW +M+ GY+R G + +
Sbjct: 147 SGLEFDRFVGNSLLTLYFKLGTDFPETRKVFDGLF-VKDVISWTSMISGYVRVGKPMNSL 205
Query: 307 KFLYLMKASGIQIQESLINDLRIACSSISASKIN 340
+ + M A G++ ++ + ACS + K+
Sbjct: 206 ELFWKMLAYGVEPNAFTLSAVIKACSELGDLKLG 239
>gi|307136183|gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo]
Length = 773
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 77/272 (28%), Positives = 137/272 (50%), Gaps = 7/272 (2%)
Query: 61 QLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWII 120
+D+ R++F+ MP +D SW +I G Y E +T+ EM G L ++ +
Sbjct: 249 SVDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVREM-----GGANLKPDSFTL 303
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
VL +++ GK++HG + G + + SLI+ Y K + D+ VF+ L
Sbjct: 304 SSVLPLIAENVDISKGKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTE 363
Query: 181 HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQ 240
+ + W + I + G F + F++M +IK SY+FSS++ AC + + G+Q
Sbjct: 364 RDGISWNSIIAGCVQNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTL-HLGKQ 422
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
+H I + G + + ++ LVDMY KC +R A ++F+ + +++ SW AM++G +G
Sbjct: 423 LHGYITRNGFDENIFIASSLVDMYAKCGNIRTARQIFDRM-RLRDMVSWTAMIMGCALHG 481
Query: 301 LYVEATKFLYLMKASGIQIQESLINDLRIACS 332
++A + MK GI+ + ACS
Sbjct: 482 HALDAIELFEQMKTEGIEPNYVAFMAVLTACS 513
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 89/162 (54%), Gaps = 2/162 (1%)
Query: 174 VFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDD 233
+F + + V W I N R G + + +EMG +K +S+T SSVL +
Sbjct: 256 IFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGANLKPDSFTLSSVLPLIAE-NV 314
Query: 234 DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
D + G+++H ++ GL+++ YV L+DMY KC + D+ RVF L+ ++ I SWN+++
Sbjct: 315 DISKGKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTERDGI-SWNSII 373
Query: 294 VGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
G ++NGL+ E KF M + I+ + + + AC+ ++
Sbjct: 374 AGCVQNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLT 415
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 104/236 (44%), Gaps = 7/236 (2%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R + + + L+ M+ C ++ + ++F + RD SW +I G V + E +
Sbjct: 328 RQGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTERDGISWNSIIAGCVQNGLFDEGLK 387
Query: 99 LFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGS 157
F +M+ M + P ++ ++ AC + LGKQ+HG + + G NI + S
Sbjct: 388 FFRQML------MAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASS 441
Query: 158 LINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKN 217
L++ Y K + A +F +++ + V WTA I+ GH F++M E I+ N
Sbjct: 442 LVDMYAKCGNIRTARQIFDRMRLRDMVSWTAMIMGCALHGHALDAIELFEQMKTEGIEPN 501
Query: 218 SYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDA 273
F +VL AC + ++ + G+ + D+ G+ L +A
Sbjct: 502 YVAFMAVLTACSHAGLVDEAWKYFNSMTLDFGIAPGVEHYAAVSDLLGRAGRLEEA 557
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 65/151 (43%), Gaps = 6/151 (3%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
+ + L+ M+ CG + TARQ+FD M LRD SW MI+G + I LF +M
Sbjct: 436 IFIASSLVDMYAKCGNIRTARQIFDRMRLRDMVSWTAMIMGCALHGHALDAIELFEQMKT 495
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
+ F A + C V E K + + G + + ++ + G+
Sbjct: 496 EGIEPNYVAFMAVLTACSHAGLVD----EAWKYFNSMTLDFGIAPGVEHYAAVSDLLGRA 551
Query: 166 RCLEDA-DFVFSQLKRHNTVVWTAKIVNNCR 195
LE+A DF+ VW A +++ CR
Sbjct: 552 GRLEEAYDFICGMPIGPTGSVW-ATLLSACR 581
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 1/114 (0%)
Query: 162 YGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTF 221
Y L D+ +F+ L + W + I G H+ F M + + F
Sbjct: 52 YSHINLLHDSLRLFNTLHFPPALAWKSVIRCYTSHGLPHKSLGSFIGMLASGLYPDHNVF 111
Query: 222 SSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAER 275
SVLKAC + D N G +H I+++GL+ D Y L++MY K R L+ + R
Sbjct: 112 PSVLKACAMLMDL-NLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLKKSGR 164
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/273 (22%), Positives = 110/273 (40%), Gaps = 49/273 (17%)
Query: 62 LDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIV 121
L + +LF+ + +W +I Y + + F M+ VFP+
Sbjct: 58 LHDSLRLFNTLHFPPALAWKSVIRCYTSHGLPHKSLGSFIGMLASGLYPDHNVFPS---- 113
Query: 122 CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED-------ADFV 174
VLKAC M++ LG+ +HG + ++G ++ +L+N Y K R L+ A V
Sbjct: 114 -VLKACAMLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLKKSGRQRLGASQV 172
Query: 175 FSQLKRHNTVVWTAKIV--NNCREGHFHQVFN-DFKEMGRE------RIKKNSYTFSSVL 225
++ V TA ++ N R+ + FN D RE I + +
Sbjct: 173 LDEMTERTRSVRTASVLVGNQGRKVSDIEAFNYDVSCRSREFEAQVLEIDYKPRSEYREM 232
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
+AC N G+Q+ + ++S ++FE++ + K+
Sbjct: 233 EAC-------NLGQQIKDISHSMSVDS--------------------VRKIFEMMPE-KD 264
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
+ SWN ++ G RNGLY E + M + ++
Sbjct: 265 LVSWNTIIAGNARNGLYGETLTMVREMGGANLK 297
>gi|326519098|dbj|BAJ96548.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 624
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 92/335 (27%), Positives = 151/335 (45%), Gaps = 14/335 (4%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCG 60
+D L T +Y I C K+ A ++ H+ N L+ ++ CG
Sbjct: 42 LDAGELAPTPRVYHTFITACAQSKNLEDARKVHAHLASS-RFAGDAFLDNSLIHLYCKCG 100
Query: 61 QLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWII 120
+ AR++FDEM +D SW +I GY +E I L M+K + F
Sbjct: 101 SVLEARKVFDEMRRKDMVSWTSLIAGYAQNDMPEEAIGLLPGMLKGRFKPNGFTF----- 155
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
+LKA + +G+Q+H L K ++ + +L++ Y + ++ A VF +L
Sbjct: 156 ASLLKAAGAHADSGIGRQIHALAVKCDWHEDVYVGSALLDMYARCGMMDMATAVFDKLDS 215
Query: 181 HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC---GGVDDDGNC 237
N V W A I R+G F EM R + +T+SSV + G ++
Sbjct: 216 KNGVSWNALISGFARKGDGETALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQ---- 271
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYI 297
G+ +HA+++K + + L+DMY K + DA +VF+ VD K++ +WN ML +
Sbjct: 272 GKWVHAHMIKSRQKMTAFAGNTLLDMYAKSGSMIDARKVFDR-VDDKDLVTWNTMLTAFA 330
Query: 298 RNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+ GL EA M+ SGI + + + ACS
Sbjct: 331 QYGLGKEAVSHFEEMRKSGIYLNQVTFLCILTACS 365
>gi|15225922|ref|NP_182129.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75100645|sp|O82363.1|PP203_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g46050, mitochondrial; Flags: Precursor
gi|3702341|gb|AAC62898.1| hypothetical protein [Arabidopsis thaliana]
gi|330255542|gb|AEC10636.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 590
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 147/308 (47%), Gaps = 30/308 (9%)
Query: 42 IKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFA 101
I +L N+LL + + D A +LFDEMPLR+ +W ++I G +
Sbjct: 67 IYNSLFLQNKLLQAYTKIREFDDADKLFDEMPLRNIVTWNILIHGVIQ-----------R 115
Query: 102 EMMKRKKGHMLLVFPAWIIVC-----------VLKACVCTMNMELGKQVHGLLFKLGSSR 150
+ + H+ + + I+ +++ C + NM+ G Q+H L+ K G
Sbjct: 116 DGDTNHRAHLGFCYLSRILFTDVSLDHVSFMGLIRLCTDSTNMKAGIQLHCLMVKQGLES 175
Query: 151 NISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMG 210
+ + SL++FYGK + +A VF + + V+W A + + G + F K MG
Sbjct: 176 SCFPSTSLVHFYGKCGLIVEARRVFEAVLDRDLVLWNALVSSYVLNGMIDEAFGLLKLMG 235
Query: 211 --RERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCR 268
+ R + + +TFSS+L AC G+Q+HA + K+ + D V L++MY K
Sbjct: 236 SDKNRFRGDYFTFSSLLSAC-----RIEQGKQIHAILFKVSYQFDIPVATALLNMYAKSN 290
Query: 269 LLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLR 328
L DA FE +V +N+ SWNAM+VG+ +NG EA + M +Q E +
Sbjct: 291 HLSDARECFESMV-VRNVVSWNAMIVGFAQNGEGREAMRLFGQMLLENLQPDELTFASVL 349
Query: 329 IACSSISA 336
+C+ SA
Sbjct: 350 SSCAKFSA 357
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 92/183 (50%), Gaps = 11/183 (6%)
Query: 137 KQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNC-R 195
KQ HG + K G ++ L L+ Y K R +DAD +F ++ N V W I R
Sbjct: 56 KQEHGFMVKQGIYNSLFLQNKLLQAYTKIREFDDADKLFDEMPLRNIVTWNILIHGVIQR 115
Query: 196 EGHF-HQVFNDFKEMGR---ERIKKNSYTFSSVLKACGGVDDDGN--CGRQMHANIVKIG 249
+G H+ F + R + + +F +++ C D N G Q+H +VK G
Sbjct: 116 DGDTNHRAHLGFCYLSRILFTDVSLDHVSFMGLIRLC---TDSTNMKAGIQLHCLMVKQG 172
Query: 250 LESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFL 309
LES + LV YGKC L+ +A RVFE ++D +++ WNA++ Y+ NG+ EA L
Sbjct: 173 LESSCFPSTSLVHFYGKCGLIVEARRVFEAVLD-RDLVLWNALVSSYVLNGMIDEAFGLL 231
Query: 310 YLM 312
LM
Sbjct: 232 KLM 234
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 107/254 (42%), Gaps = 9/254 (3%)
Query: 59 CGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAW 118
CG + AR++F+ + RD W ++ YV E L M K F
Sbjct: 190 CGLIVEARRVFEAVLDRDLVLWNALVSSYVLNGMIDEAFGLLKLMGSDKNRFRGDYF--- 246
Query: 119 IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL 178
+L AC +E GKQ+H +LFK+ +I + +L+N Y K L DA F +
Sbjct: 247 TFSSLLSAC----RIEQGKQIHAILFKVSYQFDIPVATALLNMYAKSNHLSDARECFESM 302
Query: 179 KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCG 238
N V W A IV + G + F +M E ++ + TF+SVL +C
Sbjct: 303 VVRNVVSWNAMIVGFAQNGEGREAMRLFGQMLLENLQPDELTFASVLSSCAKFSAIWEI- 361
Query: 239 RQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIR 298
+Q+ A + K G V L+ Y + L +A F I + ++ SW +++
Sbjct: 362 KQVQAMVTKKGSADFLSVANSLISSYSRNGNLSEALLCFHSIRE-PDLVSWTSVIGALAS 420
Query: 299 NGLYVEATKFLYLM 312
+G E+ + M
Sbjct: 421 HGFAEESLQMFESM 434
>gi|57899529|dbj|BAD87043.1| vegetative storage protein-like [Oryza sativa Japonica Group]
Length = 698
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 83/287 (28%), Positives = 142/287 (49%), Gaps = 6/287 (2%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
+L LL M+ CG L AR++FD MP R+ +W+ +I G+V + + LF M+
Sbjct: 158 VLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLA 217
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
+ L I L+AC ++ +G+Q+H LL K G +++ SL++ Y K
Sbjct: 218 QG----LCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKA 273
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
++ A +F ++ +TV ++A + + G + F FK+M ++ ++ T S++
Sbjct: 274 GLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLI 333
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
AC + + GR H +++ GL S+ + L+DMY KC + + +VF ++ ++
Sbjct: 334 PACSHLAALQH-GRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMM-PSRD 391
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
I SWN M+ GY +GL EAT M G L ACS
Sbjct: 392 IVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACS 438
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 86/303 (28%), Positives = 134/303 (44%), Gaps = 19/303 (6%)
Query: 47 LFLNRLLL-MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
LF++ LL M+V C L A +F MP RD +W M+ GY Y + M
Sbjct: 45 LFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQM 104
Query: 106 RKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFK--LGSSRN--------ISL 154
+ M + P A +V +L + G VH + L +RN + L
Sbjct: 105 Q----MHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLL 160
Query: 155 TGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERI 214
+L++ Y K L A VF + N V W+A I Q F FK M + +
Sbjct: 161 GTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGL 220
Query: 215 KKNSYT-FSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDA 273
S T +S L+AC +D G Q+HA + K G+ +D L+ MY K L+ A
Sbjct: 221 CFLSPTSIASALRACASLDHL-RMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQA 279
Query: 274 ERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSS 333
+F+ + K + S++A++ GY++NG EA M+A ++ + + L ACS
Sbjct: 280 IALFDEMAVKDTV-SYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSH 338
Query: 334 ISA 336
++A
Sbjct: 339 LAA 341
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 62/105 (59%), Gaps = 2/105 (1%)
Query: 209 MGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCR 268
M R R+ N+YTF LKAC + D +CGR +H + + GL++D +V L+DMY KC
Sbjct: 1 MLRHRVAPNNYTFPFALKACSALADH-HCGRAIHRHAIHAGLQADLFVSTALLDMYVKCA 59
Query: 269 LLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMK 313
L DA +F + +++ +WNAML GY +G+Y A L M+
Sbjct: 60 CLPDAAHIFA-TMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQ 103
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 97/225 (43%), Gaps = 15/225 (6%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
LKAC + G+ +H G ++ ++ +L++ Y K CL DA +F+ + +
Sbjct: 16 ALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARD 75
Query: 183 TVVWTAKIVNNCREGHFHQVFNDF--KEMGRERIKKNSYTFSSVLKACG-------GVDD 233
V W A + G +H +M R++ N+ T ++L G
Sbjct: 76 LVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSV 135
Query: 234 DGNCGRQ-MHANI-VKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
C R +H N K L + L+DMY KC L A RVF+ + +N +W+A
Sbjct: 136 HAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAM-PARNEVTWSA 194
Query: 292 MLVGYIRNGLYVEATKFLYLMKASGIQI--QESLINDLRIACSSI 334
++ G++ +A M A G+ S+ + LR AC+S+
Sbjct: 195 LIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALR-ACASL 238
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/266 (23%), Positives = 115/266 (43%), Gaps = 11/266 (4%)
Query: 31 ELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDV 90
E L+ + + + L N LL M+ G +D A LFDEM ++D S++ ++ GYV
Sbjct: 245 EQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQN 304
Query: 91 ADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSS 149
+E +F +M V P A +V ++ AC ++ G+ HG + G +
Sbjct: 305 GRAEEAFLVFKKMQACN------VEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLA 358
Query: 150 RNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEM 209
S+ +LI+ Y K ++ + VF+ + + V W I G + F EM
Sbjct: 359 SETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEM 418
Query: 210 GRERIKKNSYTFSSVLKAC--GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKC 267
+ TF +L AC G+ +G + + + + Y+ C +VD+ +
Sbjct: 419 NNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYI-C-MVDLLSRG 476
Query: 268 RLLRDAERVFELIVDKKNIASWNAML 293
L +A + + + ++ W A+L
Sbjct: 477 GFLDEAYEFIQSMPLRADVRVWVALL 502
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 86/193 (44%), Gaps = 19/193 (9%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ CG++D +RQ+F+ MP RD SW MI GY +E LF EM
Sbjct: 365 NALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNN---- 420
Query: 110 HMLLVFP--AWIIVCVLKACVCTMNMELGKQ-VHGLLFKLGSSRNISLTGSLINFYGKFR 166
L FP +C+L AC + + GK H + G + + +++ +
Sbjct: 421 ---LGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGG 477
Query: 167 CLEDA-DFVFSQLKRHNTVVWTA-----KIVNNCREGHFHQVFNDFKEMGRERIKKNSYT 220
L++A +F+ S R + VW A ++ N G +V +E+G E N
Sbjct: 478 FLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLG--KKVSRMIQELGPEG-TGNFVL 534
Query: 221 FSSVLKACGGVDD 233
S++ A G D+
Sbjct: 535 LSNIYSAAGRFDE 547
>gi|302765755|ref|XP_002966298.1| hypothetical protein SELMODRAFT_61000 [Selaginella moellendorffii]
gi|300165718|gb|EFJ32325.1| hypothetical protein SELMODRAFT_61000 [Selaginella moellendorffii]
Length = 644
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 96/312 (30%), Positives = 150/312 (48%), Gaps = 19/312 (6%)
Query: 27 AGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL-RDFNSWAVMIV 85
A L+ RKRV + LL M+V CG +++AR+LFD M + R+ W VMI
Sbjct: 50 ASCLNLVESKRKRVGVA--------LLGMYVRCGSIESARKLFDSMAVERNGECWTVMIS 101
Query: 86 GYVDVADYQECITLFAEMMKRKKGHMLLVFPA-WIIVCVLKACVCTMNMELGKQVHGLLF 144
YV E + LF KK + V P+ + +L AC +++ GK++H LL
Sbjct: 102 AYVRRGWINEALLLF------KKSLLEGVRPSEGTFIALLHACSRPASLDQGKKLHRLLE 155
Query: 145 KLGSSRNI--SLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQV 202
+ G +I SL SLI YGK L++A V +++ + +WT I + G +
Sbjct: 156 EAGFQESIAPSLATSLIKMYGKCGSLDEAWKVMEKIESRDVELWTVMIASLSHFGKLDRA 215
Query: 203 FNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVD 262
F K M E + + TF +VL+AC + G +H I + GLESD V LV+
Sbjct: 216 FELLKRMDLEGDRPSKMTFMAVLRACKDHPEARQVGGVLHGLIRERGLESDVGVGTSLVN 275
Query: 263 MYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQES 322
MY + + A+ VF I + ++++SWN +L Y R +A M G++
Sbjct: 276 MYARWGDPQQAQEVFSQI-EARDVSSWNCLLAAYSRCSRQEQALVLYREMMLEGVKPDRL 334
Query: 323 LINDLRIACSSI 334
+N + C+S+
Sbjct: 335 TLNTVIDVCASL 346
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 74/321 (23%), Positives = 142/321 (44%), Gaps = 12/321 (3%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
+ +++ C ++ +L+ + + ++ + L+ M+ G A+++F ++
Sbjct: 234 FMAVLRACKDHPEARQVGGVLHGLIRERGLESDVGVGTSLVNMYARWGDPQQAQEVFSQI 293
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIV-CVLKACVCTM 131
RD +SW ++ Y + ++ + L+ EMM V P + + V+ C
Sbjct: 294 EARDVSSWNCLLAAYSRCSRQEQALVLYREMMLEG------VKPDRLTLNTVIDVCASLK 347
Query: 132 NMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIV 191
++E G ++H + G + ++ L +LI FYG+ L+ A +F L + V W I
Sbjct: 348 DLEQGSRIHQQIASSGFASDLMLDTALITFYGRCGKLDAALEIFEALPARDNVTWNTMIA 407
Query: 192 NNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLE 251
+ F+ M +E + + T +VL CG V + + +H+ + + G E
Sbjct: 408 SLNDHSSPEAAMGFFQRMQQEGMAPSRVTLLTVLGLCGSVGE----AKLVHSCVRESGFE 463
Query: 252 SDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYL 311
D V+ L+ YG+C L A +FE + +K +SWNAM+ Y G A + +
Sbjct: 464 QDSEVKNTLITAYGRCGGLAQAVEIFEAL-PRKIESSWNAMMGAYAAQGKPRAALELFHR 522
Query: 312 MKASGIQIQESLINDLRIACS 332
M IQ + + ACS
Sbjct: 523 MVKLEQMIQPITLVSVLSACS 543
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 74/300 (24%), Positives = 128/300 (42%), Gaps = 10/300 (3%)
Query: 41 NIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLF 100
+I P+L L+ M+ CG LD A ++ +++ RD W VMI L
Sbjct: 162 SIAPSLA--TSLIKMYGKCGSLDEAWKVMEKIESRDVELWTVMIASLSHFGKLDRAFELL 219
Query: 101 AEMMKRKKGHMLLVFPAWIIVCVLKACV-CTMNMELGKQVHGLLFKLGSSRNISLTGSLI 159
M + F A VL+AC ++G +HGL+ + G ++ + SL+
Sbjct: 220 KRMDLEGDRPSKMTFMA-----VLRACKDHPEARQVGGVLHGLIRERGLESDVGVGTSLV 274
Query: 160 NFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSY 219
N Y ++ + A VFSQ++ + W + R Q ++EM E +K +
Sbjct: 275 NMYARWGDPQQAQEVFSQIEARDVSSWNCLLAAYSRCSRQEQALVLYREMMLEGVKPDRL 334
Query: 220 TFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFEL 279
T ++V+ C + D G ++H I G SD + L+ YG+C L A +FE
Sbjct: 335 TLNTVIDVCASLKDLEQ-GSRIHQQIASSGFASDLMLDTALITFYGRCGKLDAALEIFEA 393
Query: 280 IVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKI 339
+ + N+ +WN M+ + A F M+ G+ + + C S+ +K+
Sbjct: 394 LPARDNV-TWNTMIASLNDHSSPEAAMGFFQRMQQEGMAPSRVTLLTVLGLCGSVGEAKL 452
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 91/227 (40%), Gaps = 28/227 (12%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L+ L+ + CG+LD A ++F+ +P RD +W MI D + + + F M +
Sbjct: 368 LMLDTALITFYGRCGKLDAALEIFEALPARDNVTWNTMIASLNDHSSPEAAMGFFQRMQQ 427
Query: 106 RKKGHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
+ P+ + ++ VL C +L VH + + G ++ + +LI YG+
Sbjct: 428 EG------MAPSRVTLLTVLGLCGSVGEAKL---VHSCVRESGFEQDSEVKNTLITAYGR 478
Query: 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
L A +F L R W A + +G F M + T SV
Sbjct: 479 CGGLAQAVEIFEALPRKIESSWNAMMGAYAAQGKPRAALELFHRMVKLEQMIQPITLVSV 538
Query: 225 LKACGGVDDDGNCGRQMHANIVKIGLE------SDEYVQCGLVDMYG 265
L AC HA ++ GL+ SD VQ +++YG
Sbjct: 539 LSACS------------HAGLLHRGLQIFASTASDFGVQWRSLELYG 573
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 67/144 (46%), Gaps = 16/144 (11%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ + CG L A ++F+ +P + +SW M+ Y + + LF M+K ++
Sbjct: 470 NTLITAYGRCGGLAQAVEIFEALPRKIESSWNAMMGAYAAQGKPRAALELFHRMVKLEQ- 528
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSS------RNISLTGSLINFYG 163
++ P +V VL AC + G Q+ F +S R++ L G I+ G
Sbjct: 529 ---MIQPI-TLVSVLSACSHAGLLHRGLQI----FASTASDFGVQWRSLELYGCAIDLLG 580
Query: 164 KFRCLEDAD-FVFSQLKRHNTVVW 186
+ L++A+ V S ++V+W
Sbjct: 581 RAGQLQEAEMLVASSDFSGSSVLW 604
>gi|410109975|gb|AFV61067.1| pentatricopeptide repeat-containing protein 81, partial
[Coelocarpum swinglei]
Length = 394
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 81/289 (28%), Positives = 140/289 (48%), Gaps = 10/289 (3%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMP-LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRK 107
LN + + CG + A+++FD RD +W M+ Y++ Q +F EM++R+
Sbjct: 97 LNATITAYAECGSIPDAKRVFDSADGYRDLVTWNSMLAAYLEQNLEQCGFKIFLEMVRRR 156
Query: 108 KGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF-- 165
L A+ + V+ AC LGK +HGL+ K G + ++ +LI+ Y K
Sbjct: 157 -----LEMDAYTLSSVISACFGDSQQSLGKSLHGLVIKRGLEQVTQVSNALISMYLKSNS 211
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
+ +EDA +F Q+ + V W + + G F+ + + + + YTF++VL
Sbjct: 212 QXVEDALKIFEQIDVKDLVSWNTILTGLSQNGLSENALRLFQNIHLDHLVIDQYTFAAVL 271
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
++C + GRQ+H +VK G E +EYV L+ MY KC ++ D+ FE K +
Sbjct: 272 RSCSDLAT-LQLGRQVHVLVVKSGFEGNEYVASALIFMYSKCGIIEDSRESFE-ASHKNS 329
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
+WN+++ Y ++G A + YLM +++ ACS I
Sbjct: 330 SVTWNSIIFAYAQHGQGKIALELFYLMTERDVKLDHVTFVAALTACSHI 378
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 75/259 (28%), Positives = 125/259 (48%), Gaps = 12/259 (4%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEM-MKRKKGHMLL 113
M+ C +++ A ++F M R+ SW +I GY ++ + + CI LF M M+ +
Sbjct: 2 MYAKCRRVEDANKVFKYMQERNTVSWNALIGGYAEMGNLERCIKLFVGMEMEGVRVDDAT 61
Query: 114 VFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADF 173
P +L + +L +Q+HG + K G ++ + I Y + + DA
Sbjct: 62 FAP------LLTLLYDAESYDLTRQLHGKIMKRGLEHENTVLNATITAYAECGSIPDAKR 115
Query: 174 VFSQLKRH-NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVD 232
VF + + V W + + + F F EM R R++ ++YT SSV+ AC G D
Sbjct: 116 VFDSADGYRDLVTWNSMLAAYLEQNLEQCGFKIFLEMVRRRLEMDAYTLSSVISACFG-D 174
Query: 233 DDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGK--CRLLRDAERVFELIVDKKNIASWN 290
+ G+ +H ++K GLE V L+ MY K + + DA ++FE I D K++ SWN
Sbjct: 175 SQQSLGKSLHGLVIKRGLEQVTQVSNALISMYLKSNSQXVEDALKIFEQI-DVKDLVSWN 233
Query: 291 AMLVGYIRNGLYVEATKFL 309
+L G +NGL A +
Sbjct: 234 TILTGLSQNGLSENALRLF 252
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 71/142 (50%), Gaps = 1/142 (0%)
Query: 160 NFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSY 219
+ Y K R +EDA+ VF ++ NTV W A I G+ + F M E ++ +
Sbjct: 1 DMYAKCRRVEDANKVFKYMQERNTVSWNALIGGYAEMGNLERCIKLFVGMEMEGVRVDDA 60
Query: 220 TFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFEL 279
TF+ +L + + RQ+H I+K GLE + V + Y +C + DA+RVF+
Sbjct: 61 TFAPLLTLLYDAES-YDLTRQLHGKIMKRGLEHENTVLNATITAYAECGSIPDAKRVFDS 119
Query: 280 IVDKKNIASWNAMLVGYIRNGL 301
+++ +WN+ML Y+ L
Sbjct: 120 ADGYRDLVTWNSMLAAYLEQNL 141
>gi|297598430|ref|NP_001045574.2| Os01g0977400 [Oryza sativa Japonica Group]
gi|255674132|dbj|BAF07488.2| Os01g0977400, partial [Oryza sativa Japonica Group]
Length = 687
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 83/287 (28%), Positives = 142/287 (49%), Gaps = 6/287 (2%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
+L LL M+ CG L AR++FD MP R+ +W+ +I G+V + + LF M+
Sbjct: 158 VLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLA 217
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
+ L I L+AC ++ +G+Q+H LL K G +++ SL++ Y K
Sbjct: 218 QG----LCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKA 273
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
++ A +F ++ +TV ++A + + G + F FK+M ++ ++ T S++
Sbjct: 274 GLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLI 333
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
AC + + GR H +++ GL S+ + L+DMY KC + + +VF ++ ++
Sbjct: 334 PACSHLAALQH-GRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMM-PSRD 391
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
I SWN M+ GY +GL EAT M G L ACS
Sbjct: 392 IVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACS 438
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 86/303 (28%), Positives = 134/303 (44%), Gaps = 19/303 (6%)
Query: 47 LFLNRLLL-MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
LF++ LL M+V C L A +F MP RD +W M+ GY Y + M
Sbjct: 45 LFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQM 104
Query: 106 RKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFK--LGSSRN--------ISL 154
+ M + P A +V +L + G VH + L +RN + L
Sbjct: 105 Q----MHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLL 160
Query: 155 TGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERI 214
+L++ Y K L A VF + N V W+A I Q F FK M + +
Sbjct: 161 GTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGL 220
Query: 215 KKNSYT-FSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDA 273
S T +S L+AC +D G Q+HA + K G+ +D L+ MY K L+ A
Sbjct: 221 CFLSPTSIASALRACASLDHL-RMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQA 279
Query: 274 ERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSS 333
+F+ + K + S++A++ GY++NG EA M+A ++ + + L ACS
Sbjct: 280 IALFDEMAVKDTV-SYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSH 338
Query: 334 ISA 336
++A
Sbjct: 339 LAA 341
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 62/105 (59%), Gaps = 2/105 (1%)
Query: 209 MGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCR 268
M R R+ N+YTF LKAC + D +CGR +H + + GL++D +V L+DMY KC
Sbjct: 1 MLRHRVAPNNYTFPFALKACSALADH-HCGRAIHRHAIHAGLQADLFVSTALLDMYVKCA 59
Query: 269 LLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMK 313
L DA +F + +++ +WNAML GY +G+Y A L M+
Sbjct: 60 CLPDAAHIFA-TMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQ 103
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 97/225 (43%), Gaps = 15/225 (6%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
LKAC + G+ +H G ++ ++ +L++ Y K CL DA +F+ + +
Sbjct: 16 ALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARD 75
Query: 183 TVVWTAKIVNNCREGHFHQVFNDF--KEMGRERIKKNSYTFSSVLKACG-------GVDD 233
V W A + G +H +M R++ N+ T ++L G
Sbjct: 76 LVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSV 135
Query: 234 DGNCGRQ-MHANI-VKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
C R +H N K L + L+DMY KC L A RVF+ + +N +W+A
Sbjct: 136 HAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAM-PARNEVTWSA 194
Query: 292 MLVGYIRNGLYVEATKFLYLMKASGIQI--QESLINDLRIACSSI 334
++ G++ +A M A G+ S+ + LR AC+S+
Sbjct: 195 LIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALR-ACASL 238
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/266 (23%), Positives = 115/266 (43%), Gaps = 11/266 (4%)
Query: 31 ELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDV 90
E L+ + + + L N LL M+ G +D A LFDEM ++D S++ ++ GYV
Sbjct: 245 EQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQN 304
Query: 91 ADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSS 149
+E +F +M V P A +V ++ AC ++ G+ HG + G +
Sbjct: 305 GRAEEAFLVFKKMQACN------VEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLA 358
Query: 150 RNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEM 209
S+ +LI+ Y K ++ + VF+ + + V W I G + F EM
Sbjct: 359 SETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEM 418
Query: 210 GRERIKKNSYTFSSVLKAC--GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKC 267
+ TF +L AC G+ +G + + + + Y+ C +VD+ +
Sbjct: 419 NNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYI-C-MVDLLSRG 476
Query: 268 RLLRDAERVFELIVDKKNIASWNAML 293
L +A + + + ++ W A+L
Sbjct: 477 GFLDEAYEFIQSMPLRADVRVWVALL 502
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 86/193 (44%), Gaps = 19/193 (9%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ CG++D +RQ+F+ MP RD SW MI GY +E LF EM
Sbjct: 365 NALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNN---- 420
Query: 110 HMLLVFP--AWIIVCVLKACVCTMNMELGKQ-VHGLLFKLGSSRNISLTGSLINFYGKFR 166
L FP +C+L AC + + GK H + G + + +++ +
Sbjct: 421 ---LGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGG 477
Query: 167 CLEDA-DFVFSQLKRHNTVVWTA-----KIVNNCREGHFHQVFNDFKEMGRERIKKNSYT 220
L++A +F+ S R + VW A ++ N G +V +E+G E N
Sbjct: 478 FLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLG--KKVSRMIQELGPEG-TGNFVL 534
Query: 221 FSSVLKACGGVDD 233
S++ A G D+
Sbjct: 535 LSNIYSAAGRFDE 547
>gi|225450537|ref|XP_002277327.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g56570 [Vitis vinifera]
Length = 607
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 82/277 (29%), Positives = 134/277 (48%), Gaps = 9/277 (3%)
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI 119
G + AR LFDEMP RD +W VMI GY ++ +F EMM + L A+
Sbjct: 57 GLIGEARTLFDEMPERDVVAWTVMIAGYTSCNNHTHAWMVFCEMMNEE-----LDPNAFT 111
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK-FRCLEDADFVFSQL 178
I VLKAC + G+ VHGL K G I + +L++ Y ++DA VF +
Sbjct: 112 ISSVLKACKGMKCLSYGRLVHGLAIKHGLDGFIYVDNALMDMYATCCVSMDDACMVFRGI 171
Query: 179 KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCG 238
N V WT I + F++M E ++ N ++FS ++AC + G
Sbjct: 172 HLKNEVSWTTLIAGYTHRDDGYGGLRVFRQMLLEEVELNPFSFSIAVRACTSIGSH-TFG 230
Query: 239 RQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIR 298
Q+HA + K G ES+ V ++DMY +C +A R F ++++++ +WN ++ GY R
Sbjct: 231 EQLHAAVTKHGFESNLPVMNSILDMYCRCSCFSEANRYF-YEMNQRDLITWNTLIAGYER 289
Query: 299 NGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
+ E+ +M++ G + AC++++
Sbjct: 290 SNP-TESLYVFSMMESEGFSPNCFTFTSIMAACATLA 325
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 74/284 (26%), Positives = 139/284 (48%), Gaps = 9/284 (3%)
Query: 50 NRLLLMHVSCG-QLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
N L+ M+ +C +D A +F + L++ SW +I GY D + +F +M+ +
Sbjct: 148 NALMDMYATCCVSMDDACMVFRGIHLKNEVSWTTLIAGYTHRDDGYGGLRVFRQMLLEE- 206
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+ + ++AC + G+Q+H + K G N+ + S+++ Y + C
Sbjct: 207 ----VELNPFSFSIAVRACTSIGSHTFGEQLHAAVTKHGFESNLPVMNSILDMYCRCSCF 262
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+A+ F ++ + + + W I R ++ F M E N +TF+S++ AC
Sbjct: 263 SEANRYFYEMNQRDLITWNTLIAGYERSNPTESLYV-FSMMESEGFSPNCFTFTSIMAAC 321
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
+ NCG+Q+H I++ GL+ + + L+DMY KC + D+ +VF + ++++ S
Sbjct: 322 ATLAFL-NCGQQIHGRIIRRGLDGNLALSNALIDMYSKCGNIADSHQVFGGM-SRRDLVS 379
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
W AM++GY +G EA + M SGI+ + + ACS
Sbjct: 380 WTAMMIGYGTHGYGEEAVELFDKMVRSGIRPDRVVFMAILSACS 423
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/265 (24%), Positives = 119/265 (44%), Gaps = 10/265 (3%)
Query: 31 ELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDV 90
E L+ + + L +N +L M+ C A + F EM RD +W +I GY +
Sbjct: 231 EQLHAAVTKHGFESNLPVMNSILDMYCRCSCFSEANRYFYEMNQRDLITWNTLIAGY-ER 289
Query: 91 ADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSR 150
++ E + +F+ M F + ++ AC + G+Q+HG + + G
Sbjct: 290 SNPTESLYVFSMMESEGFSPNCFTFTS-----IMAACATLAFLNCGQQIHGRIIRRGLDG 344
Query: 151 NISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMG 210
N++L+ +LI+ Y K + D+ VF + R + V WTA ++ G+ + F +M
Sbjct: 345 NLALSNALIDMYSKCGNIADSHQVFGGMSRRDLVSWTAMMIGYGTHGYGEEAVELFDKMV 404
Query: 211 RERIKKNSYTFSSVLKAC--GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCR 268
R I+ + F ++L AC G+ D+G R + + D+ + +VD+ G+
Sbjct: 405 RSGIRPDRVVFMAILSACSHAGLVDEGL--RYFKLMVGDYNISPDQEIYGCVVDLLGRAG 462
Query: 269 LLRDAERVFELIVDKKNIASWNAML 293
+ +A + E + K + W L
Sbjct: 463 KVEEAYELIESMPFKPDECVWGPFL 487
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 70/147 (47%), Gaps = 9/147 (6%)
Query: 154 LTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRER 213
L +LI Y + +A +F ++ + V WT I + + F EM E
Sbjct: 45 LATTLIKSYFGKGLIGEARTLFDEMPERDVVAWTVMIAGYTSCNNHTHAWMVFCEMMNEE 104
Query: 214 IKKNSYTFSSVLKACGGVDDDGNC---GRQMHANIVKIGLESDEYVQCGLVDMYGKCRL- 269
+ N++T SSVLKAC G+ C GR +H +K GL+ YV L+DMY C +
Sbjct: 105 LDPNAFTISSVLKACKGM----KCLSYGRLVHGLAIKHGLDGFIYVDNALMDMYATCCVS 160
Query: 270 LRDAERVFELIVDKKNIASWNAMLVGY 296
+ DA VF I KN SW ++ GY
Sbjct: 161 MDDACMVFRGI-HLKNEVSWTTLIAGY 186
>gi|347954460|gb|AEP33730.1| chlororespiratory reduction 21, partial [Capsella bursa-pastoris]
Length = 820
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 85/255 (33%), Positives = 131/255 (51%), Gaps = 10/255 (3%)
Query: 67 QLFDEMP-LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLK 125
+L DE P S+ + + +E ++L EM R L + P I +L+
Sbjct: 13 KLHDEQPQAPSSTSYFHRVSSLCKNGEIKEALSLVTEMDFRN----LRIGPE-IYGEILQ 67
Query: 126 ACVCTMNMELGKQVHGLLFKLGS--SRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNT 183
CV ++ GKQ+H + K G +RN + L+ FY K LE A+ +FS+L+ N
Sbjct: 68 GCVYERDLCTGKQIHARILKNGDLYARNEYIETKLVIFYAKCDDLEIAEVLFSKLRVRNV 127
Query: 184 VVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHA 243
W A I CR G F EM I +++ +V KACG + GR +H
Sbjct: 128 FSWAAIIGVKCRMGLCEGALMGFVEMLENEIFPDNFVVPNVFKACGALQW-SRFGRGVHG 186
Query: 244 NIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYV 303
++K GLE +V L DMYGKC +L DA +VF+ I ++N+ +WNA++VGY++NG+
Sbjct: 187 YVLKAGLEDCVFVASSLADMYGKCGVLDDARKVFDEI-PERNVVAWNALMVGYVQNGMNE 245
Query: 304 EATKFLYLMKASGIQ 318
EA + L M+ G++
Sbjct: 246 EAIRLLSDMRKDGVE 260
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/318 (26%), Positives = 154/318 (48%), Gaps = 16/318 (5%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFL-NRLLLMHVSC 59
MD L I ++Y +++ C +++D ++ I K ++ ++ +L++ + C
Sbjct: 50 MDFRNLRIGPEIYGEILQGCVYERDLCTGKQIHARILKNGDLYARNEYIETKLVIFYAKC 109
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AW 118
L+ A LF ++ +R+ SWA +I + + + F EM++ + +FP +
Sbjct: 110 DDLEIAEVLFSKLRVRNVFSWAAIIGVKCRMGLCEGALMGFVEMLENE------IFPDNF 163
Query: 119 IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL 178
++ V KAC G+ VHG + K G + + SL + YGK L+DA VF ++
Sbjct: 164 VVPNVFKACGALQWSRFGRGVHGYVLKAGLEDCVFVASSLADMYGKCGVLDDARKVFDEI 223
Query: 179 KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC---GGVDDDG 235
N V W A +V + G + +M ++ ++ T S+ L A GV++
Sbjct: 224 PERNVVAWNALMVGYVQNGMNEEAIRLLSDMRKDGVEPTRVTVSTCLSASANMAGVEE-- 281
Query: 236 NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
G Q HA + GLE D + L++ Y K L+ AE +F+ + + K++ +WN ++ G
Sbjct: 282 --GTQCHAIAIVNGLELDNILGTSLLNFYCKVGLIEYAEMIFDRMFE-KDVVTWNLLISG 338
Query: 296 YIRNGLYVEATKFLYLMK 313
Y++ GL +A LM+
Sbjct: 339 YVQQGLVEDAIYMCQLMR 356
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/264 (29%), Positives = 130/264 (49%), Gaps = 9/264 (3%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+ CG LD AR++FDE+P R+ +W ++VGYV +E I L ++M RK G V
Sbjct: 206 MYGKCGVLDDARKVFDEIPERNVVAWNALMVGYVQNGMNEEAIRLLSDM--RKDG----V 259
Query: 115 FPAWIIVCV-LKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADF 173
P + V L A +E G Q H + G + L SL+NFY K +E A+
Sbjct: 260 EPTRVTVSTCLSASANMAGVEEGTQCHAIAIVNGLELDNILGTSLLNFYCKVGLIEYAEM 319
Query: 174 VFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDD 233
+F ++ + V W I ++G + M E++K + T ++++ A +
Sbjct: 320 IFDRMFEKDVVTWNLLISGYVQQGLVEDAIYMCQLMRLEKLKYDCVTLATLMSAAART-E 378
Query: 234 DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
+ G+++ + LESD + +DMY KC + DA++VF+ V+ K++ WN +L
Sbjct: 379 NLKLGKEVQCXCFRHSLESDIVLASTAMDMYAKCGSIVDAKKVFDSTVE-KDLILWNTLL 437
Query: 294 VGYIRNGLYVEATKFLYLMKASGI 317
Y +G EA + Y M+ +
Sbjct: 438 AAYAESGHSGEALRLFYEMQLESV 461
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/267 (22%), Positives = 111/267 (41%), Gaps = 38/267 (14%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL + G ++ A +FD M +D +W ++I GYV ++ I + ++M+ +K
Sbjct: 304 LLNFYCKVGLIEYAEMIFDRMFEKDVVTWNLLISGYVQQGLVEDAIYM-CQLMRLEK--- 359
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
L + + ++ A T N++LGK+V F+ +I L + ++ Y K + DA
Sbjct: 360 -LKYDCVTLATLMSAAARTENLKLGKEVQCXCFRHSLESDIVLASTAMDMYAKCGSIVDA 418
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
VF + ++W + GH + F EM E + N T++ ++ +
Sbjct: 419 KKVFDSTVEKDLILWNTLLAAYAESGHSGEALRLFYEMQLESVPPNVITWNLIILS-RLR 477
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
+ + N ++M + G+ N+ SW
Sbjct: 478 NAEVNEAKEMFLQMQSSGI--------------------------------TPNLISWTT 505
Query: 292 MLVGYIRNGLYVEATKFLYLMKASGIQ 318
M+ G ++NG EA FL M+ SG++
Sbjct: 506 MMNGMVQNGCSEEAIHFLRKMQESGMR 532
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/198 (21%), Positives = 86/198 (43%), Gaps = 10/198 (5%)
Query: 41 NIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMP----LRDFNSWAVMIVGYVDVADYQEC 96
++ P ++ N ++L + +++ A+++F +M + SW M+ G V +E
Sbjct: 460 SVPPNVITWNLIILSRLRNAEVNEAKEMFLQMQSSGITPNLISWTTMMNGMVQNGCSEEA 519
Query: 97 ITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFK-LGSSRNISLT 155
I +M + + A+ I L A + G+ +HG + + L S + S+
Sbjct: 520 IHFLRKMQESG-----MRPNAFSITVALSASANLASXHFGRSIHGYIIRNLRHSSSASIE 574
Query: 156 GSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIK 215
SL++ Y K + A+ VF + ++ A I G+ + ++ + K
Sbjct: 575 TSLVDMYAKCGDINKAERVFESKLSNELPLYNAMISAYALXGNVTEAVALYRSLEDMGXK 634
Query: 216 KNSYTFSSVLKACGGVDD 233
+S TF+S+L AC D
Sbjct: 635 PDSITFTSLLSACNHAGD 652
>gi|225447243|ref|XP_002272819.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g03540-like [Vitis vinifera]
Length = 633
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 86/292 (29%), Positives = 148/292 (50%), Gaps = 12/292 (4%)
Query: 12 MYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCG-QLDTARQLFD 70
+Y L++ CT ++ H+ K ++ N LL ++ G R++FD
Sbjct: 61 LYASLLQTCTKVLAFNHGLQIHAHVIKS-GLEFDRFVGNSLLTLYFKLGTDFPETRKVFD 119
Query: 71 EMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCVLKACVC 129
+ ++D SW MI GYV V + LF +M+ V P A+ + V+KAC
Sbjct: 120 GLFVKDVISWTSMISGYVRVGKPMNSLELFWKMLAYG------VEPNAFTLSAVIKACSE 173
Query: 130 TMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAK 189
+++LG+ HG++ G N + +LI+ +G+ L+DA +F +L + + WT+
Sbjct: 174 LGDLKLGRIFHGVVLGRGFDSNYVIASALIDMHGRNCALDDARQLFDELLEPDAICWTSI 233
Query: 190 IVNNCREGHFHQVFNDFKEMGRER-IKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKI 248
I R F + F M R+ + + +TF +VL ACG + G+++HA ++
Sbjct: 234 ISALTRNDFFDEALRFFYSMQRDHGMCPDGFTFGTVLTACGNLGRLKQ-GKEVHAKVITT 292
Query: 249 GLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
G + V+ LVDMYGKC + +++R+F+ + KN SW+A+L GY +NG
Sbjct: 293 GFCGNVVVESSLVDMYGKCGSVGESQRIFDRM-PIKNSVSWSALLGGYCQNG 343
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/281 (28%), Positives = 135/281 (48%), Gaps = 10/281 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ MH LD ARQLFDE+ D W +I + E + F M +R G
Sbjct: 202 LIDMHGRNCALDDARQLFDELLEPDAICWTSIISALTRNDFFDEALRFFYSM-QRDHG-- 258
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+ + VL AC ++ GK+VH + G N+ + SL++ YGK + ++
Sbjct: 259 -MCPDGFTFGTVLTACGNLGRLKQGKEVHAKVITTGFCGNVVVESSLVDMYGKCGSVGES 317
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
+F ++ N+V W+A + C+ G F V F++M K + Y F ++L+ C G+
Sbjct: 318 QRIFDRMPIKNSVSWSALLGGYCQNGDFKSVIQIFRKME----KVDLYCFGTILRTCAGL 373
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
G+++H ++ G D V+ LVD+Y KC + A+ +F+ + +N+ +WN+
Sbjct: 374 AAVRQ-GKEVHCQYIRKGGWRDVIVESALVDLYAKCGCIEYAQTIFDQM-PVRNLITWNS 431
Query: 292 MLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
M+ G+ +NG EA + M GI+ + ACS
Sbjct: 432 MIGGFAQNGRGEEALRIFNQMVKEGIKPDYISFIGILFACS 472
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 125/252 (49%), Gaps = 25/252 (9%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+ L+ M+ CG + ++++FD MP+++ SW+ ++ GY D++ I +F +M K
Sbjct: 302 SSLVDMYGKCGSVGESQRIFDRMPIKNSVSWSALLGGYCQNGDFKSVIQIFRKMEK---- 357
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ +L+ C + GK+VH + G R++ + +L++ Y K C+E
Sbjct: 358 -----VDLYCFGTILRTCAGLAAVRQGKEVHCQYIRKGGWRDVIVESALVDLYAKCGCIE 412
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC- 228
A +F Q+ N + W + I + G + F +M +E IK + +F +L AC
Sbjct: 413 YAQTIFDQMPVRNLITWNSMIGGFAQNGRGEEALRIFNQMVKEGIKPDYISFIGILFACS 472
Query: 229 --GGVDDDGNCGRQMHANI-----VKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIV 281
G VD+ GR+ ++ +K+G+ E+ C +VD+ G+ LL +AE + E
Sbjct: 473 HRGLVDE----GREYFISMTKDYGIKVGI---EHYSC-MVDLLGRAGLLEEAEILIETSD 524
Query: 282 DKKNIASWNAML 293
+ + + W A+L
Sbjct: 525 FRDDSSLWAALL 536
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 76/154 (49%), Gaps = 3/154 (1%)
Query: 188 AKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVK 247
+KI+ C+ G K + I ++S+L+ C V N G Q+HA+++K
Sbjct: 29 SKILQLCKSGELSGALQLLKSIDPGEISAKPVLYASLLQTCTKVLAF-NHGLQIHAHVIK 87
Query: 248 IGLESDEYVQCGLVDMYGKCRL-LRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEAT 306
GLE D +V L+ +Y K + +VF+ + K++ SW +M+ GY+R G + +
Sbjct: 88 SGLEFDRFVGNSLLTLYFKLGTDFPETRKVFDGLF-VKDVISWTSMISGYVRVGKPMNSL 146
Query: 307 KFLYLMKASGIQIQESLINDLRIACSSISASKIN 340
+ + M A G++ ++ + ACS + K+
Sbjct: 147 ELFWKMLAYGVEPNAFTLSAVIKACSELGDLKLG 180
>gi|356522365|ref|XP_003529817.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
chloroplastic-like [Glycine max]
Length = 882
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 96/313 (30%), Positives = 152/313 (48%), Gaps = 14/313 (4%)
Query: 4 LCLPITTDMYT--CLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQ 61
L + + D+YT C+++ C + E+ H+ R + + +N L+ M+V CG
Sbjct: 199 LWVGVKPDVYTFPCVLRTCGGMPNLVRGREIHVHV-IRYGFESDVDVVNALITMYVKCGD 257
Query: 62 LDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIV 121
++TAR +FD+MP RD SW MI GY + E + LF M+K L+ +
Sbjct: 258 VNTARLVFDKMPNRDRISWNAMISGYFENGVCLEGLRLFGMMIKYPVDPDLMT-----MT 312
Query: 122 CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH 181
V+ AC + LG+Q+HG + + R+ S+ SLI Y +E+A+ VFS+ +
Sbjct: 313 SVITACELLGDDRLGRQIHGYVLRTEFGRDPSIHNSLIPMYSSVGLIEEAETVFSRTECR 372
Query: 182 NTVVWTAKI--VNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGR 239
+ V WTA I NC + +K M E I + T + VL AC + + + G
Sbjct: 373 DLVSWTAMISGYENCLMP--QKALETYKMMEAEGIMPDEITIAIVLSACSCLCNL-DMGM 429
Query: 240 QMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRN 299
+H + GL S V L+DMY KC+ + A +F ++ KNI SW ++++G N
Sbjct: 430 NLHEVAKQKGLVSYSIVANSLIDMYAKCKCIDKALEIFHSTLE-KNIVSWTSIILGLRIN 488
Query: 300 GLYVEATKFLYLM 312
EA F M
Sbjct: 489 NRCFEALFFFREM 501
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 97/335 (28%), Positives = 156/335 (46%), Gaps = 26/335 (7%)
Query: 7 PITTDMYT--CLIKECTFQKDSAGAFELLNHI-RKRVNIKPTLLFLNRLLLMHVSCGQLD 63
P+ D+ T +I C D ++ ++ R P++ N L+ M+ S G ++
Sbjct: 303 PVDPDLMTMTSVITACELLGDDRLGRQIHGYVLRTEFGRDPSIH--NSLIPMYSSVGLIE 360
Query: 64 TARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI-IVC 122
A +F RD SW MI GY + Q+ + + +MM+ + + P I I
Sbjct: 361 EAETVFSRTECRDLVSWTAMISGYENCLMPQKALETY-KMMEAEG-----IMPDEITIAI 414
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
VL AC C N+++G +H + + G + SLI+ Y K +C++ A +F N
Sbjct: 415 VLSACSCLCNLDMGMNLHEVAKQKGLVSYSIVANSLIDMYAKCKCIDKALEIFHSTLEKN 474
Query: 183 TVVWTA-----KIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC 237
V WT+ +I N C E F F+EM R R+K NS T VL AC + C
Sbjct: 475 IVSWTSIILGLRINNRCFEALFF-----FREMIR-RLKPNSVTLVCVLSACARIGAL-TC 527
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYI 297
G+++HA+ ++ G+ D ++ ++DMY +C + A + F VD + + SWN +L GY
Sbjct: 528 GKEIHAHALRTGVSFDGFMPNAILDMYVRCGRMEYAWKQF-FSVDHE-VTSWNILLTGYA 585
Query: 298 RNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
G AT+ M S + E + ACS
Sbjct: 586 ERGKGAHATELFQRMVESNVSPNEVTFISILCACS 620
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 87/332 (26%), Positives = 151/332 (45%), Gaps = 8/332 (2%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCG 60
M L +P+ D Y LI+ C +++ + +++ ++ +L N LL M V G
Sbjct: 97 MHELRIPVEDDAYVALIRLCEWKRARKEGSRVYSYVSISMS-HLSLQLGNALLSMFVRFG 155
Query: 61 QLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWII 120
L A +F M R+ SW V++ GY + E + L+ M+ + FP
Sbjct: 156 NLVDAWYVFGRMEKRNLFSWNVLVGGYAKAGLFDEALDLYHRMLWVGVKPDVYTFP---- 211
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
CVL+ C N+ G+++H + + G ++ + +LI Y K + A VF ++
Sbjct: 212 -CVLRTCGGMPNLVRGREIHVHVIRYGFESDVDVVNALITMYVKCGDVNTARLVFDKMPN 270
Query: 181 HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQ 240
+ + W A I G + F M + + + T +SV+ AC + DD GRQ
Sbjct: 271 RDRISWNAMISGYFENGVCLEGLRLFGMMIKYPVDPDLMTMTSVITACELLGDD-RLGRQ 329
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
+H +++ D + L+ MY L+ +AE VF + +++ SW AM+ GY
Sbjct: 330 IHGYVLRTEFGRDPSIHNSLIPMYSSVGLIEEAETVFSR-TECRDLVSWTAMISGYENCL 388
Query: 301 LYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+ +A + +M+A GI E I + ACS
Sbjct: 389 MPQKALETYKMMEAEGIMPDEITIAIVLSACS 420
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 112/219 (51%), Gaps = 8/219 (3%)
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
V +++ C + G +V+ + S ++ L +L++ + +F L DA +VF ++++
Sbjct: 110 VALIRLCEWKRARKEGSRVYSYVSISMSHLSLQLGNALLSMFVRFGNLVDAWYVFGRMEK 169
Query: 181 HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQ 240
N W + + G F + + + M +K + YTF VL+ CGG+ + GR+
Sbjct: 170 RNLFSWNVLVGGYAKAGLFDEALDLYHRMLWVGVKPDVYTFPCVLRTCGGMPNLVR-GRE 228
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
+H ++++ G ESD V L+ MY KC + A VF+ + ++ I SWNAM+ GY NG
Sbjct: 229 IHVHVIRYGFESDVDVVNALITMYVKCGDVNTARLVFDKMPNRDRI-SWNAMISGYFENG 287
Query: 301 LYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKI 339
+ +E + G+ I+ + DL S I+A ++
Sbjct: 288 VCLEGLRLF------GMMIKYPVDPDLMTMTSVITACEL 320
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/261 (21%), Positives = 106/261 (40%), Gaps = 7/261 (2%)
Query: 33 LNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVAD 92
L+ + K+ + + N L+ M+ C +D A ++F ++ SW +I+G
Sbjct: 431 LHEVAKQKGLVSYSIVANSLIDMYAKCKCIDKALEIFHSTLEKNIVSWTSIILGLRINNR 490
Query: 93 YQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNI 152
E + F EM++R K + + +VCVL AC + GK++H + G S +
Sbjct: 491 CFEALFFFREMIRRLKPNSV------TLVCVLSACARIGALTCGKEIHAHALRTGVSFDG 544
Query: 153 SLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRE 212
+ ++++ Y + +E A F + H W + G F+ M
Sbjct: 545 FMPNAILDMYVRCGRMEYAWKQFFSVD-HEVTSWNILLTGYAERGKGAHATELFQRMVES 603
Query: 213 RIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRD 272
+ N TF S+L AC ++ K + + +VD+ G+ L +
Sbjct: 604 NVSPNEVTFISILCACSRSGMVAEGLEYFNSMKYKYSIMPNLKHYACVVDLLGRSGKLEE 663
Query: 273 AERVFELIVDKKNIASWNAML 293
A + + K + A W A+L
Sbjct: 664 AYEFIQKMPMKPDPAVWGALL 684
>gi|302757017|ref|XP_002961932.1| hypothetical protein SELMODRAFT_24361 [Selaginella moellendorffii]
gi|300170591|gb|EFJ37192.1| hypothetical protein SELMODRAFT_24361 [Selaginella moellendorffii]
Length = 282
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 79/263 (30%), Positives = 128/263 (48%), Gaps = 7/263 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ G L A+ +FD +P ++ SW V+I Y D +E + + +M
Sbjct: 2 NSLVNMYGKGGNLVLAKSVFDSVPHKNLVSWNVLIGSYAGDGDGKEALGVHQKMELEG-- 59
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
L + + VL AC + + GK +H L+ G + + +LI YG RC+E
Sbjct: 60 ---LKPDKFTFISVLHACSASEALAEGKAIHALIAASGFDSSCFVATTLIKMYGCCRCME 116
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
+A VF ++ + V+WTA + R ++ M E ++KN +TFSS++ C
Sbjct: 117 EAKAVFDRVASKDIVLWTALLTAYSRNEDAKGALLVYRNMDLEGMEKNRFTFSSIVSVCA 176
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ G+++H + V +G + D V LVD Y KC + A VF+ I + K+I W
Sbjct: 177 DAEALAE-GQKVHLHTVSVGYDKDVIVGTTLVDFYSKCHDVDTARSVFDGI-EGKDIVPW 234
Query: 290 NAMLVGYIRNGLYVEATKFLYLM 312
N M+ G+ RNG EA + M
Sbjct: 235 NVMITGFARNGHGREAVRLYQKM 257
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 73/145 (50%), Gaps = 2/145 (1%)
Query: 155 TGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERI 214
+ SL+N YGK L A VF + N V W I + +G + ++M E +
Sbjct: 1 SNSLVNMYGKGGNLVLAKSVFDSVPHKNLVSWNVLIGSYAGDGDGKEALGVHQKMELEGL 60
Query: 215 KKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAE 274
K + +TF SVL AC + G+ +HA I G +S +V L+ MYG CR + +A+
Sbjct: 61 KPDKFTFISVLHACSASEALAE-GKAIHALIAASGFDSSCFVATTLIKMYGCCRCMEEAK 119
Query: 275 RVFELIVDKKNIASWNAMLVGYIRN 299
VF+ + K+I W A+L Y RN
Sbjct: 120 AVFDRVA-SKDIVLWTALLTAYSRN 143
>gi|255562460|ref|XP_002522236.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538489|gb|EEF40094.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 640
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 84/288 (29%), Positives = 143/288 (49%), Gaps = 11/288 (3%)
Query: 47 LFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR 106
L +L+ M+V+CG + R +FD++ W +M+ GY + ++E + LF +M+
Sbjct: 135 LLGTKLVFMYVNCGDIREGRVIFDKIANEKVFLWNLMLSGYAKIGAFEESVYLFRKMLD- 193
Query: 107 KKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166
+ + + + C+LK +++ G+ VHG L KLG ++ SLI+FY K R
Sbjct: 194 ----LGIQVNSHTVSCILKCFAALGSVKEGEWVHGYLLKLGFGSYNTVVNSLISFYFKTR 249
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
+E A VF +LK + V W + I + FKEM + + T +VL
Sbjct: 250 KIEAAYEVFDELKNRDIVSWNSMISGTVANDLPEKGIQVFKEMLYLGVSFDLVTLVNVLA 309
Query: 227 ACGGVDDDGN--CGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
AC + GN GR +HA +K L+ L+DMY KC L +A RVF+ + ++
Sbjct: 310 ACA---NSGNFPLGRVLHAFAIKAQLDQRMTFVNTLLDMYSKCGDLNNAIRVFQKM-GER 365
Query: 285 NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
++ SW +++ GY R GL E + + M+ G++ + + AC+
Sbjct: 366 SVVSWTSLIAGYAREGLSGEGIRLFHEMEREGVRPDNFTVTAVLHACA 413
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 92/336 (27%), Positives = 163/336 (48%), Gaps = 9/336 (2%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCG 60
M +L + + + +C++K C S E ++ ++ +N L+ +
Sbjct: 191 MLDLGIQVNSHTVSCILK-CFAALGSVKEGEWVHGYLLKLGFGSYNTVVNSLISFYFKTR 249
Query: 61 QLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWII 120
+++ A ++FDE+ RD SW MI G V ++ I +F EM+ ++ + F +
Sbjct: 250 KIEAAYEVFDELKNRDIVSWNSMISGTVANDLPEKGIQVFKEML-----YLGVSFDLVTL 304
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
V VL AC + N LG+ +H K + ++ +L++ Y K L +A VF ++
Sbjct: 305 VNVLAACANSGNFPLGRVLHAFAIKAQLDQRMTFVNTLLDMYSKCGDLNNAIRVFQKMGE 364
Query: 181 HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQ 240
+ V WT+ I REG + F EM RE ++ +++T ++VL AC G+
Sbjct: 365 RSVVSWTSLIAGYAREGLSGEGIRLFHEMEREGVRPDNFTVTAVLHAC-ACSGSLEIGKD 423
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
+H + + ++ D V L+DMY KC + DA VF L + K+I SWN M+ GY +NG
Sbjct: 424 VHDYVKENNMQKDRIVCNSLMDMYAKCGSMEDANLVF-LEMPNKDIVSWNTMIGGYSKNG 482
Query: 301 LYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
E T L++ ++ + + AC+S++A
Sbjct: 483 RPNE-TLHLFVAMVQELKPDGRTMACILPACASLAA 517
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 83/276 (30%), Positives = 135/276 (48%), Gaps = 13/276 (4%)
Query: 26 SAGAFEL---LNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAV 82
++G F L L+ + + + F+N LL M+ CG L+ A ++F +M R SW
Sbjct: 313 NSGNFPLGRVLHAFAIKAQLDQRMTFVNTLLDMYSKCGDLNNAIRVFQKMGERSVVSWTS 372
Query: 83 MIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHG 141
+I GY E I LF EM + V P + + VL AC C+ ++E+GK VH
Sbjct: 373 LIAGYAREGLSGEGIRLFHEMEREG------VRPDNFTVTAVLHACACSGSLEIGKDVHD 426
Query: 142 LLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQ 201
+ + ++ + SL++ Y K +EDA+ VF ++ + V W I + G ++
Sbjct: 427 YVKENNMQKDRIVCNSLMDMYAKCGSMEDANLVFLEMPNKDIVSWNTMIGGYSKNGRPNE 486
Query: 202 VFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLV 261
+ F M +E +K + T + +L AC + GR++H I + G D +V L+
Sbjct: 487 TLHLFVAMVQE-LKPDGRTMACILPACASLAALDR-GREIHGYIQRNGCFDDLHVANALI 544
Query: 262 DMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYI 297
DMY KC L A F++I K++ SW M+ G I
Sbjct: 545 DMYAKCGALALARLFFDMI-PVKDLISWTVMIAGDI 579
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 73/159 (45%), Gaps = 6/159 (3%)
Query: 38 KRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECI 97
K N++ + N L+ M+ CG ++ A +F EMP +D SW MI GY E +
Sbjct: 429 KENNMQKDRIVCNSLMDMYAKCGSMEDANLVFLEMPNKDIVSWNTMIGGYSKNGRPNETL 488
Query: 98 TLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGS 157
LF M++ K + C+L AC ++ G+++HG + + G ++ + +
Sbjct: 489 HLFVAMVQELKPD------GRTMACILPACASLAALDRGREIHGYIQRNGCFDDLHVANA 542
Query: 158 LINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCRE 196
LI+ Y K L A F + + + WT I + E
Sbjct: 543 LIDMYAKCGALALARLFFDMIPVKDLISWTVMIAGDIDE 581
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 96/214 (44%), Gaps = 8/214 (3%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
+L+ C +++ GK+VH + G + L L+ Y + + +F ++
Sbjct: 105 ILQLCAELNSLQEGKKVHSFISSSGIFVDGLLGTKLVFMYVNCGDIREGRVIFDKIANEK 164
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK---ACGGVDDDGNCGR 239
+W + + G F + F++M I+ NS+T S +LK A G V + G
Sbjct: 165 VFLWNLMLSGYAKIGAFEESVYLFRKMLDLGIQVNSHTVSCILKCFAALGSVKE----GE 220
Query: 240 QMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRN 299
+H ++K+G S V L+ Y K R + A VF+ + ++I SWN+M+ G + N
Sbjct: 221 WVHGYLLKLGFGSYNTVVNSLISFYFKTRKIEAAYEVFDEL-KNRDIVSWNSMISGTVAN 279
Query: 300 GLYVEATKFLYLMKASGIQIQESLINDLRIACSS 333
L + + M G+ + ++ AC++
Sbjct: 280 DLPEKGIQVFKEMLYLGVSFDLVTLVNVLAACAN 313
>gi|218193846|gb|EEC76273.1| hypothetical protein OsI_13747 [Oryza sativa Indica Group]
Length = 602
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 88/312 (28%), Positives = 150/312 (48%), Gaps = 11/312 (3%)
Query: 31 ELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDV 90
L++ + + + + + L+ M+ + G L ARQ+FD M RD W VM+ GYV
Sbjct: 166 RLVHRTARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDGYVKA 225
Query: 91 ADYQECITLFAEMMKRKKGHMLLVFPAW-IIVCVLKACVCTMNMELGKQVHGLLFKLGSS 149
+ LF +M R G P + + C L ++ G Q+H L K G
Sbjct: 226 GSVSSAVELFGDM--RASG----CEPNFATLACFLSVSATESDLFFGVQLHTLAVKYGLE 279
Query: 150 RNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEM 209
+++ +L++ Y K +CL+D +F + R + V W I + G Q F +M
Sbjct: 280 SEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDM 339
Query: 210 GRERIKKNSYTFSSVLKACGGVDDDG-NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCR 268
+ I+ +S T S+L A D +G N G+++H IV+ + D ++ LVD+Y KCR
Sbjct: 340 QKSGIRPDSVTLVSLLPAL--TDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKCR 397
Query: 269 LLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLR 328
+R A+ V++ ++ + M+ GY+ NG+ EA K + GI+ I +
Sbjct: 398 AVRMAQSVYD-SSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVL 456
Query: 329 IACSSISASKIN 340
AC+S++A K+
Sbjct: 457 PACASMAAMKLG 468
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 77/305 (25%), Positives = 138/305 (45%), Gaps = 9/305 (2%)
Query: 33 LNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVAD 92
L+ + + ++ + N L+ M+ C LD +LF MP D +W MI G V
Sbjct: 269 LHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGF 328
Query: 93 YQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN-MELGKQVHGLLFKLGSSRN 151
+ + LF +M K + P + + L + +N GK++HG + + +
Sbjct: 329 VDQALLLFCDMQKSG------IRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMD 382
Query: 152 ISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGR 211
+ L +L++ Y K R + A V+ K + V+ + I G + F+ +
Sbjct: 383 VFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLE 442
Query: 212 ERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLR 271
+ I+ N+ +SVL AC + G+++H+ +K E YV+ L+DMY KC L
Sbjct: 443 QGIRPNAVAIASVLPACASMAAM-KLGQELHSYALKNAYEGRCYVESALMDMYAKCGRLD 501
Query: 272 DAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
+ +F I K + +WN+M+ + +NG EA M G++ I+ + AC
Sbjct: 502 LSHYIFSKISAKDEV-TWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSAC 560
Query: 332 SSISA 336
+S+ A
Sbjct: 561 ASLPA 565
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 72/274 (26%), Positives = 117/274 (42%), Gaps = 12/274 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFN---SWAVMIVGYVDVADYQECITLFAEMMKR 106
RL+ M+V + A +F +P W +I G DY+ + + +M
Sbjct: 79 TRLVGMYVLARRFRDAVAVFSSLPRGAAACALPWNWLIRGLTMAGDYRSALLFYLKMWAH 138
Query: 107 KKGHML--LVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
+ FP V+K+C + LG+ VH LG ++ + +LI Y
Sbjct: 139 PSAPLPDSHTFPY-----VVKSCAALGAIALGRLVHRTARTLGLDGDMFVGSALIKMYAN 193
Query: 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
L DA VF + + V+W + + G F +M + N T +
Sbjct: 194 GGLLWDARQVFDGMAERDCVLWNVMMDGYVKAGSVSSAVELFGDMRASGCEPNFATLACF 253
Query: 225 LKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
L + + D G Q+H VK GLES+ V LV MY KC+ L D ++F L+ +
Sbjct: 254 L-SVSATESDLFFGVQLHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLM-PRD 311
Query: 285 NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
++ +WN M+ G ++NG +A M+ SGI+
Sbjct: 312 DLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIR 345
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 94/205 (45%), Gaps = 8/205 (3%)
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLG-SSRNISLTGSLINFYGKFRCLEDADFVFSQL 178
++ VL+ CV ++ LG QVHG G + + +L L+ Y R DA VFS L
Sbjct: 42 LLAVLRGCVSPSHLSLGLQVHGRAVTAGLHATDTALQTRLVGMYVLARRFRDAVAVFSSL 101
Query: 179 KRHN---TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIK--KNSYTFSSVLKACGGVDD 233
R + W I G + + +M +S+TF V+K+C +
Sbjct: 102 PRGAAACALPWNWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAALGA 161
Query: 234 DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
GR +H +GL+ D +V L+ MY LL DA +VF+ + ++ + WN M+
Sbjct: 162 IA-LGRLVHRTARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDCVL-WNVMM 219
Query: 294 VGYIRNGLYVEATKFLYLMKASGIQ 318
GY++ G A + M+ASG +
Sbjct: 220 DGYVKAGSVSSAVELFGDMRASGCE 244
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 101/209 (48%), Gaps = 8/209 (3%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
+ ++ L+ ++ C + A+ ++D D + MI GYV QE + +F +++
Sbjct: 383 VFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLE 442
Query: 106 RKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
+ + P A I VL AC M+LG+++H K + +L++ Y K
Sbjct: 443 QG------IRPNAVAIASVLPACASMAAMKLGQELHSYALKNAYEGRCYVESALMDMYAK 496
Query: 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
L+ + ++FS++ + V W + I + + G + N F+EM E +K ++ T SSV
Sbjct: 497 CGRLDLSHYIFSKISAKDEVTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSV 556
Query: 225 LKACGGVDDDGNCGRQMHANIVKIGLESD 253
L AC + G+++H ++K + +D
Sbjct: 557 LSACASLPAI-YYGKEIHGVVIKGPIRAD 584
>gi|147864762|emb|CAN84062.1| hypothetical protein VITISV_010661 [Vitis vinifera]
Length = 641
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 88/296 (29%), Positives = 146/296 (49%), Gaps = 7/296 (2%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
RV ++ + N L+ M+ CG +++AR+LFDEMP+R SW M+ + D ++ +
Sbjct: 75 RVGLRADTITSNMLMNMYSKCGLVESARKLFDEMPVRSLVSWNTMVGSHTQNGDSEKALV 134
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
LF +M +K+G F +VC A C KQ+HG K N+ + +L
Sbjct: 135 LFMQM--QKEGISCSEFTVSSVVCACAAKCCVFEC---KQLHGFALKTALDSNVFVGTAL 189
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
++ Y K ++DA VF + + V W++ + + + + F ++ N
Sbjct: 190 LDVYAKCGLVKDASLVFECMPERSDVTWSSMVAGYVQNELYEEALVLFHRAQAMGLEHNQ 249
Query: 219 YTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE 278
+T SS L AC G+Q+ A + K G+ S+ +V L+DMY KC ++ +A VF
Sbjct: 250 FTISSALSACAARAALIE-GKQVQAVLCKTGIGSNIFVISSLIDMYAKCGIIEEAYIVFS 308
Query: 279 LIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
V++KN+ WNAML G+ R+ +EA + M+ GI E + ACS +
Sbjct: 309 -SVEEKNVVLWNAMLSGFSRHVRSLEAMIYFEKMQQMGICPNEITYISVLTACSHL 363
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 98/183 (53%), Gaps = 2/183 (1%)
Query: 136 GKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCR 195
G H + ++G + + L+N Y K +E A +F ++ + V W + ++ +
Sbjct: 66 GMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMPVRSLVSWNTMVGSHTQ 125
Query: 196 EGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEY 255
G + F +M +E I + +T SSV+ AC C +Q+H +K L+S+ +
Sbjct: 126 NGDSEKALVLFMQMQKEGISCSEFTVSSVVCACAAKCCVFEC-KQLHGFALKTALDSNVF 184
Query: 256 VQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKAS 315
V L+D+Y KC L++DA VFE + ++ ++ +W++M+ GY++N LY EA + +A
Sbjct: 185 VGTALLDVYAKCGLVKDASLVFECMPERSDV-TWSSMVAGYVQNELYEEALVLFHRAQAM 243
Query: 316 GIQ 318
G++
Sbjct: 244 GLE 246
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 77/292 (26%), Positives = 130/292 (44%), Gaps = 19/292 (6%)
Query: 8 ITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQ 67
+++ + C K C F+ F L + + + LL ++ CG + A
Sbjct: 151 VSSVVCACAAKCCVFECKQLHGFAL------KTALDSNVFVGTALLDVYAKCGLVKDASL 204
Query: 68 LFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKAC 127
+F+ MP R +W+ M+ GYV Y+E + LF + M L + I L AC
Sbjct: 205 VFECMPERSDVTWSSMVAGYVQNELYEEALVLF-----HRAQAMGLEHNQFTISSALSAC 259
Query: 128 VCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWT 187
+ GKQV +L K G NI + SLI+ Y K +E+A VFS ++ N V+W
Sbjct: 260 AARAALIEGKQVQAVLCKTGIGSNIFVISSLIDMYAKCGIIEEAYIVFSSVEEKNVVLWN 319
Query: 188 AKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC---GGVDDDGNCGRQMHAN 244
A + R + F++M + I N T+ SVL AC G V+ GR+
Sbjct: 320 AMLSGFSRHVRSLEAMIYFEKMQQMGICPNEITYISVLTACSHLGLVEK----GRKYFDL 375
Query: 245 IVKIGLESDEYVQCG-LVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
++++ S + +VD+ G+ LL +A+ + + + + W ++L
Sbjct: 376 MIRVHNVSPNVLHYSCMVDILGRAGLLHEAKDLIDRMPFDATASMWGSLLAS 427
>gi|356561794|ref|XP_003549163.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
mitochondrial-like [Glycine max]
Length = 615
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 85/284 (29%), Positives = 135/284 (47%), Gaps = 8/284 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+V +D AR++FD M + SW MI GYV + E LF +M + G
Sbjct: 190 NSLMGMYVQFCLMDEARKVFDLMDEKSIISWTTMIGGYVKIGHAVEAYGLFYQMQHQSVG 249
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+VF + ++ C+ ++ L VH L+ K G + + LI Y K L
Sbjct: 250 IDFVVF-----LNLISGCIQVRDLLLASSVHSLVLKCGCNEKDPVENLLITMYAKCGNLT 304
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A +F + + + WT+ I GH + + F+ M R I+ N T ++V+ AC
Sbjct: 305 SARRIFDLIIEKSMLSWTSMIAGYVHLGHPGEALDLFRRMIRTDIRPNGATLATVVSACA 364
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ + G+++ I GLESD+ VQ L+ MY KC + A VFE + D K++ W
Sbjct: 365 DLGSL-SIGQEIEEYIFLNGLESDQQVQTSLIHMYSKCGSIVKAREVFERVTD-KDLTVW 422
Query: 290 NAMLVGYIRNGLYVEATKFLYLM-KASGIQIQESLINDLRIACS 332
+M+ Y +G+ EA + M A GI + + +ACS
Sbjct: 423 TSMINSYAIHGMGNEAISLFHKMTTAEGIMPDAIVYTSVFLACS 466
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 89/333 (26%), Positives = 150/333 (45%), Gaps = 14/333 (4%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
Y L+K C L H+ K + + L+ M+ C + +ARQ+FDEM
Sbjct: 49 YPLLLKACANLPSIQHGTMLHGHVLK-LGFQADTFVQTALVDMYSKCSHVASARQVFDEM 107
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTM 131
P R SW M+ Y + + ++L EM +L P A V +L
Sbjct: 108 PQRSVVSWNAMVSAYSRRSSMDQALSLLKEMW------VLGFEPTASTFVSILSGYSNLD 161
Query: 132 NME---LGKQVHGLLFKLG-SSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWT 187
+ E LGK +H L KLG +SL SL+ Y +F +++A VF + + + WT
Sbjct: 162 SFEFHLLGKSIHCCLIKLGIVYLEVSLANSLMGMYVQFCLMDEARKVFDLMDEKSIISWT 221
Query: 188 AKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVK 247
I + GH + + F +M + + + F +++ C V D +H+ ++K
Sbjct: 222 TMIGGYVKIGHAVEAYGLFYQMQHQSVGIDFVVFLNLISGCIQVRDL-LLASSVHSLVLK 280
Query: 248 IGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATK 307
G + V+ L+ MY KC L A R+F+LI++ K++ SW +M+ GY+ G EA
Sbjct: 281 CGCNEKDPVENLLITMYAKCGNLTSARRIFDLIIE-KSMLSWTSMIAGYVHLGHPGEALD 339
Query: 308 FLYLMKASGIQIQESLINDLRIACSSISASKIN 340
M + I+ + + + AC+ + + I
Sbjct: 340 LFRRMIRTDIRPNGATLATVVSACADLGSLSIG 372
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 118/248 (47%), Gaps = 9/248 (3%)
Query: 75 RDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNME 134
R +W +MI + + + + +++ M L +P +LKAC +++
Sbjct: 9 RSLYTWNLMIRDSTNNGFFTQTLNIYSSMAHSGVHGNNLTYP-----LLLKACANLPSIQ 63
Query: 135 LGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNC 194
G +HG + KLG + + +L++ Y K + A VF ++ + + V W A +
Sbjct: 64 HGTMLHGHVLKLGFQADTFVQTALVDMYSKCSHVASARQVFDEMPQRSVVSWNAMVSAYS 123
Query: 195 REGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVD--DDGNCGRQMHANIVKIGLES 252
R Q + KEM + + TF S+L +D + G+ +H ++K+G+
Sbjct: 124 RRSSMDQALSLLKEMWVLGFEPTASTFVSILSGYSNLDSFEFHLLGKSIHCCLIKLGIVY 183
Query: 253 DEY-VQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYL 311
E + L+ MY + L+ +A +VF+L+ D+K+I SW M+ GY++ G VEA Y
Sbjct: 184 LEVSLANSLMGMYVQFCLMDEARKVFDLM-DEKSIISWTTMIGGYVKIGHAVEAYGLFYQ 242
Query: 312 MKASGIQI 319
M+ + I
Sbjct: 243 MQHQSVGI 250
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 72/143 (50%), Gaps = 2/143 (1%)
Query: 180 RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGR 239
R + W I ++ G F Q N + M + N+ T+ +LKAC + + G
Sbjct: 8 RRSLYTWNLMIRDSTNNGFFTQTLNIYSSMAHSGVHGNNLTYPLLLKACANLPSIQH-GT 66
Query: 240 QMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRN 299
+H +++K+G ++D +VQ LVDMY KC + A +VF+ + ++++ SWNAM+ Y R
Sbjct: 67 MLHGHVLKLGFQADTFVQTALVDMYSKCSHVASARQVFDEM-PQRSVVSWNAMVSAYSRR 125
Query: 300 GLYVEATKFLYLMKASGIQIQES 322
+A L M G + S
Sbjct: 126 SSMDQALSLLKEMWVLGFEPTAS 148
>gi|357121739|ref|XP_003562575.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like [Brachypodium distachyon]
Length = 770
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 84/293 (28%), Positives = 144/293 (49%), Gaps = 11/293 (3%)
Query: 8 ITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQ 67
+ + MY L+ C GA L H+ K I + L+ +++ CG AR
Sbjct: 76 VQSAMYVPLLHRCIETGSLGGAKALHGHMVKTGTIV-DIFVATSLVNVYMRCGNSQDARN 134
Query: 68 LFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPA-WIIVCVLKA 126
LFDEMP ++ +W +I GY + + +F EM+K + +P+ + + +L A
Sbjct: 135 LFDEMPEKNVVTWTALITGYTLNSQPVLALEVFVEMLKLGR------YPSDYTLGGMLSA 188
Query: 127 CVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVW 186
CV + N++LGKQVHG K G++ S+ SL Y K LE F ++ N + W
Sbjct: 189 CVASHNIDLGKQVHGYTIKYGAASITSIGNSLCRLYTKSGNLESGIRAFKRIPDKNVITW 248
Query: 187 TAKIVNNCREGHFHQV-FNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANI 245
T I + ++ ++ N F +M + + N +T +SV+ C G D N G+Q+
Sbjct: 249 TTMISACAEDENYTELGLNLFLDMLKGEVMPNEFTLTSVMSLC-GTSLDMNLGKQVQGFC 307
Query: 246 VKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIR 298
KIG ++ V+ + +Y + +A R+FE + D ++ +WNAM+ G+ +
Sbjct: 308 FKIGCATNLPVKNSTMYLYLRKGETEEAMRLFEEMED-NSVITWNAMISGFAQ 359
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 79/296 (26%), Positives = 143/296 (48%), Gaps = 21/296 (7%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQEC-ITLFAEMMKRKK 108
N L ++ G L++ + F +P ++ +W MI + +Y E + LF +M+K +
Sbjct: 218 NSLCRLYTKSGNLESGIRAFKRIPDKNVITWTTMISACAEDENYTELGLNLFLDMLKGE- 276
Query: 109 GHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
V P + + V+ C +++M LGKQV G FK+G + N+ + S + Y +
Sbjct: 277 -----VMPNEFTLTSVMSLCGTSLDMNLGKQVQGFCFKIGCATNLPVKNSTMYLYLRKGE 331
Query: 168 LEDADFVFSQLKRHNTVVWTAKI-----VNNCREGHFH------QVFNDFKEMGRERIKK 216
E+A +F +++ ++ + W A I + + + H Q F+++ R +K
Sbjct: 332 TEEAMRLFEEMEDNSVITWNAMISGFAQIMDSAKDDLHARSRGFQALKIFRDLVRSAMKP 391
Query: 217 NSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERV 276
+ +TFSS+L C + G Q+HA +K G SD V LV+MY KC + A +
Sbjct: 392 DLFTFSSILSVCSTMMALEQ-GEQIHAQTIKTGFLSDVVVNSALVNMYNKCGCIEYATKA 450
Query: 277 FELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
F + + + + +W +M+ GY ++G +A + M +G + E L ACS
Sbjct: 451 F-VEMPTRTLVTWTSMISGYSQHGRPHDAIQLFEDMILAGAKPNEITFVSLLSACS 505
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/259 (24%), Positives = 113/259 (43%), Gaps = 20/259 (7%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQ-----------ECIT 98
N + +++ G+ + A +LF+EM +W MI G+ + D + +
Sbjct: 320 NSTMYLYLRKGETEEAMRLFEEMEDNSVITWNAMISGFAQIMDSAKDDLHARSRGFQALK 379
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
+F ++++ L F + +L C M +E G+Q+H K G ++ + +L
Sbjct: 380 IFRDLVRSAMKPDLFTFSS-----ILSVCSTMMALEQGEQIHAQTIKTGFLSDVVVNSAL 434
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
+N Y K C+E A F ++ V WT+ I + G H F++M K N
Sbjct: 435 VNMYNKCGCIEYATKAFVEMPTRTLVTWTSMISGYSQHGRPHDAIQLFEDMILAGAKPNE 494
Query: 219 YTFSSVLKAC--GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERV 276
TF S+L AC G+ ++ M N I D Y C ++DM+ + L DA
Sbjct: 495 ITFVSLLSACSYAGLVEEAMRYFDMMQNEYHIEPLMDHY-GC-MIDMFVRLGRLDDAYAF 552
Query: 277 FELIVDKKNIASWNAMLVG 295
+ + N A W++++ G
Sbjct: 553 IKRKGFEPNEAIWSSLVAG 571
Score = 45.4 bits (106), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYI 297
+ +H ++VK G D +V LV++Y +C +DA +F+ + +K N+ +W A++ GY
Sbjct: 97 AKALHGHMVKTGTIVDIFVATSLVNVYMRCGNSQDARNLFDEMPEK-NVVTWTALITGYT 155
Query: 298 RNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
N V A + M G + + + AC
Sbjct: 156 LNSQPVLALEVFVEMLKLGRYPSDYTLGGMLSAC 189
>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
Length = 1725
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 98/339 (28%), Positives = 160/339 (47%), Gaps = 13/339 (3%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLL-MHVSC 59
+ L L T + C IK C+ D ++H + V T LF++ L+ M+ C
Sbjct: 1133 LRKLGLIPTRSSFPCTIKSCSALCDLVSG--RMSHQQAFVFGFETDLFVSSALIDMYSKC 1190
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRK---KGHMLLVFP 116
GQL AR LFDE+PLR+ SW MI GYV + LF + ++ + + +
Sbjct: 1191 GQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLD 1250
Query: 117 AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFS 176
+ ++V VL AC + + VHG + K G +I + +L++ Y K + VF
Sbjct: 1251 SVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFD 1310
Query: 177 QLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRE-RIKKNSYTFSSVLKAC--GGVDD 233
++ + + W + I + G + F M R ++ N+ T S+VL AC G
Sbjct: 1311 WMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALR 1370
Query: 234 DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
G C +H ++K+ LE + V ++DMY KC + A++ F+ + +KN+ SW AM+
Sbjct: 1371 AGKC---IHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRM-KEKNVKSWTAMV 1426
Query: 294 VGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
GY +G EA Y M +G++ + ACS
Sbjct: 1427 AGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACS 1465
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 83/323 (25%), Positives = 144/323 (44%), Gaps = 48/323 (14%)
Query: 47 LFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR 106
L +L+ ++ + G++ A LF ++ +W ++I ++ + L+ M+ +
Sbjct: 60 LLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQ 119
Query: 107 KKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166
FP V+KAC ++++LGK VHG L K G S ++ + +LI+FY F+
Sbjct: 120 GIAADKFTFP-----FVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFY--FK 172
Query: 167 C---------------------------------LEDADFVFSQLKRHNTVVWTAKIVNN 193
C L++A +F ++ N V WTA I
Sbjct: 173 CGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGY 232
Query: 194 CREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDG--NCGRQMHANIVKIGLE 251
R + FK M E I N YT S++KAC + G GR +H +K +E
Sbjct: 233 IRNQQPEEALELFKRMQAENIFPNEYTMVSLIKAC---TEMGILTLGRGIHDYAIKNCIE 289
Query: 252 SDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYL 311
Y+ L+DMY KC ++DA VFE + +K++ +WN+M+ +GL EA
Sbjct: 290 IGVYLGTALIDMYSKCGSIKDAIEVFETM-PRKSLPTWNSMITSLGVHGLGQEALNLFSE 348
Query: 312 MKASGIQIQESLINDLRIACSSI 334
M+ + ++ I + + C+ +
Sbjct: 349 MER--VNVKPDAITFIGVLCACV 369
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 117/248 (47%), Gaps = 12/248 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ + CGQ ++++FD M +D SW MI Y E + +F M++
Sbjct: 1290 NTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVR---- 1345
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
H+ + + A + VL AC + GK +H + K+ N+ + S+I+ Y K +E
Sbjct: 1346 HVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVE 1405
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC- 228
A F ++K N WTA + G + + F +M R +K N TF SVL AC
Sbjct: 1406 MAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACS 1465
Query: 229 --GGVDDDGNCGRQM-HANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
G V++ + M H ++ G+ E+ C +VD++G+ L +A + + + K +
Sbjct: 1466 HAGLVEEGWHWFNAMKHKYDIEPGI---EHYGC-MVDLFGRAGCLNEAYNLIKRMKMKPD 1521
Query: 286 IASWNAML 293
W ++L
Sbjct: 1522 FVVWGSLL 1529
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 97/228 (42%), Gaps = 31/228 (13%)
Query: 137 KQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCRE 196
+Q+H + + G S + LT LI+ Y + A +F Q++ T W I N
Sbjct: 44 RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTIN 103
Query: 197 GHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYV 256
G Q +K M + I + +TF V+KAC + G+ +H +++K G D +V
Sbjct: 104 GLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSI-DLGKVVHGSLIKYGFSGDVFV 162
Query: 257 QCGLVDMYGKCRLLRDAERVFELI------------------------------VDKKNI 286
Q L+D Y KC R A +VFE + + KN+
Sbjct: 163 QNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNV 222
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
SW AM+ GYIRN EA + M+A I E + L AC+ +
Sbjct: 223 VSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEM 270
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 70/144 (48%), Gaps = 10/144 (6%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+ CG+++ A++ FD M ++ SW M+ GY +E + +F +M++ V
Sbjct: 1397 MYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAG------V 1450
Query: 115 FPAWI-IVCVLKACVCTMNMELGKQ-VHGLLFKLGSSRNISLTGSLINFYGKFRCLEDAD 172
P +I V VL AC +E G + + K I G +++ +G+ CL +A
Sbjct: 1451 KPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAY 1510
Query: 173 FVFSQLK-RHNTVVWTAKIVNNCR 195
+ ++K + + VVW ++ CR
Sbjct: 1511 NLIKRMKMKPDFVVW-GSLLGACR 1533
>gi|302141901|emb|CBI19104.3| unnamed protein product [Vitis vinifera]
Length = 457
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 79/249 (31%), Positives = 126/249 (50%), Gaps = 14/249 (5%)
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK---RKKGHMLLVFP 116
G+L AR++FD+MP R+ SW ++ GY E + LF + ++ R G
Sbjct: 112 GKLVEARKVFDKMPERNVVSWTAVVNGYSRYGFDDEALRLFDDCIENGVRANGKTF---- 167
Query: 117 AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFS 176
VCVL C ++ ELG+Q+H + K + RN+ + +L+ FY + L A F
Sbjct: 168 ----VCVLNLCSKRLDFELGRQIHACIVK-DNWRNLIVDSALVCFYAQCGDLSGAFHAFD 222
Query: 177 QLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGN 236
Q+ + V WT I ++G + + F +M N +T SVLKACG +
Sbjct: 223 QMPERDVVCWTTMITACSQQGRGTEALSMFSQMMFNTSSPNEFTVCSVLKACGE-EKALE 281
Query: 237 CGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGY 296
G+Q+H I+K + D ++ LV MY KC + D+ +VF+ + K+N +W +++ GY
Sbjct: 282 FGKQLHGAIIKKMFKEDVFIGTSLVGMYAKCGEILDSRKVFDGM-KKRNTVTWTSIIAGY 340
Query: 297 IRNGLYVEA 305
RNG EA
Sbjct: 341 ARNGQGEEA 349
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 82/291 (28%), Positives = 127/291 (43%), Gaps = 48/291 (16%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L+ + L+ + CG L A FD+MP RD W MI E +++F++MM
Sbjct: 198 LIVDSALVCFYAQCGDLSGAFHAFDQMPERDVVCWTTMITACSQQGRGTEALSMFSQMMF 257
Query: 106 RKKGHMLLVFPAWIIVC-VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
P VC VLKAC +E GKQ+HG + K ++ + SL+ Y K
Sbjct: 258 NTSS------PNEFTVCSVLKACGEEKALEFGKQLHGAIIKKMFKEDVFIGTSLVGMYAK 311
Query: 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
+ D+ VF +K+ NTV WT+ I R G + + F+E
Sbjct: 312 CGEILDSRKVFDGMKKRNTVTWTSIIAGYARNGQGEEAISLFREF--------------- 356
Query: 225 LKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRD-AERVFELIVDK 283
D G+ + +E+ + K L R + V I+ +
Sbjct: 357 ------TDGKGSS-----------CTDHEEF--------HAKQHLHRKHSSMVLLQIMPQ 391
Query: 284 KNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
+N+ SW AM+VGY RNGL EA K +Y M+A GI++ + ++ + AC +
Sbjct: 392 RNLVSWKAMIVGYARNGLCGEALKLMYRMQAEGIEVDDYILTTVLSACGDV 442
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 82/217 (37%), Gaps = 43/217 (19%)
Query: 16 LIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLR 75
++K C +K +L I K++ K + L+ M+ CG++ +R++FD M R
Sbjct: 270 VLKACGEEKALEFGKQLHGAIIKKM-FKEDVFIGTSLVGMYAKCGEILDSRKVFDGMKKR 328
Query: 76 DFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMEL 135
+ +W +I GY +E I+LF E K CT + E
Sbjct: 329 NTVTWTSIIAGYARNGQGEEAISLFREFTDG------------------KGSSCTDHEEF 370
Query: 136 GKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCR 195
+ H L + SS + + + N V W A IV R
Sbjct: 371 HAKQH--LHRKHSSM----------------------VLLQIMPQRNLVSWKAMIVGYAR 406
Query: 196 EGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVD 232
G + M E I+ + Y ++VL ACG V+
Sbjct: 407 NGLCGEALKLMYRMQAEGIEVDDYILTTVLSACGDVE 443
>gi|222630191|gb|EEE62323.1| hypothetical protein OsJ_17112 [Oryza sativa Japonica Group]
Length = 591
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 86/289 (29%), Positives = 139/289 (48%), Gaps = 8/289 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ + CG +A ++F M ++ +W MI G Y+E +LF +M++
Sbjct: 162 NALVTAYFECGSPASAERVFHGMAEKNVITWTAMISGMARAELYKESFSLFGQMIRTVDA 221
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ C L AC ++ G+QVHGL+ K G ++ + L++ Y K +E
Sbjct: 222 NNA------TYSCALLACARSLAAREGQQVHGLVVKAGFEDDLHVESGLMDVYSKCGLME 275
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
DA VF + + V T +V + G + F F EM + + T S+VL A G
Sbjct: 276 DALTVFRSCREPDEVFLTVILVGFAQNGLEEKAFELFAEMVGAGNEIDENTVSAVLGAFG 335
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
G+Q+HA ++K + YV GLV+MY KC LR++ RVF+ + KN SW
Sbjct: 336 -ASAPFALGKQIHALVIKRCFGVNTYVCNGLVNMYSKCGELRESVRVFDEM-PSKNSVSW 393
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASK 338
N+++ + R+G E + MKA G + + L ACS + ++K
Sbjct: 394 NSIIAAFARHGHGSEVYQLFESMKADGAKPTDVTFLSLLHACSHVGSAK 442
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 84/295 (28%), Positives = 135/295 (45%), Gaps = 22/295 (7%)
Query: 38 KRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECI 97
R ++ L+ N L+ M+ CG+ + A ++FDEM +RD SW +I D +
Sbjct: 49 SRPWLRHVLVAWNSLVSMYARCGRREDAARVFDEMRVRDAVSWNSLIAASRGAGD---AL 105
Query: 98 TLFAEMMK-------RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSR 150
LF M++ R +L A L AC VHGL+ G
Sbjct: 106 ALFRRMLRSDARACDRATFTTVLSECARAGAASLPACA---------MVHGLVVSCGFEA 156
Query: 151 NISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMG 210
+ + +L+ Y + A+ VF + N + WTA I R + + F+ F +M
Sbjct: 157 EVPVGNALVTAYFECGSPASAERVFHGMAEKNVITWTAMISGMARAELYKESFSLFGQMI 216
Query: 211 RERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLL 270
R + N+ T+S L AC G+Q+H +VK G E D +V+ GL+D+Y KC L+
Sbjct: 217 RT-VDANNATYSCALLAC-ARSLAAREGQQVHGLVVKAGFEDDLHVESGLMDVYSKCGLM 274
Query: 271 RDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLIN 325
DA VF + + +LVG+ +NGL +A + M +G +I E+ ++
Sbjct: 275 EDALTVFRSCREPDEV-FLTVILVGFAQNGLEEKAFELFAEMVGAGNEIDENTVS 328
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 71/282 (25%), Positives = 121/282 (42%), Gaps = 8/282 (2%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
Y+C + C + +A + ++ + + + L + L+ ++ CG ++ A +F
Sbjct: 226 YSCALLACA-RSLAAREGQQVHGLVVKAGFEDDLHVESGLMDVYSKCGLMEDALTVFRSC 284
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN 132
D V++VG+ ++ LFAEM+ + VL A +
Sbjct: 285 REPDEVFLTVILVGFAQNGLEEKAFELFAEMVGAGN-----EIDENTVSAVLGAFGASAP 339
Query: 133 MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192
LGKQ+H L+ K N + L+N Y K L ++ VF ++ N+V W + I
Sbjct: 340 FALGKQIHALVIKRCFGVNTYVCNGLVNMYSKCGELRESVRVFDEMPSKNSVSWNSIIAA 399
Query: 193 NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIG-LE 251
R GH +V+ F+ M + K TF S+L AC V +++ + G L
Sbjct: 400 FARHGHGSEVYQLFESMKADGAKPTDVTFLSLLHACSHVGSAKKGLEILNSMSSQYGVLP 459
Query: 252 SDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
E+ C +VDM G+ LL DA+ E N W A++
Sbjct: 460 RMEHYAC-VVDMLGRAGLLDDAKSFIEDGPFTDNALLWQALM 500
>gi|326515658|dbj|BAK07075.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 796
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 80/297 (26%), Positives = 148/297 (49%), Gaps = 15/297 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ CG + ARQ+FD RD SW ++ GYV + + +FA M R+ G
Sbjct: 153 NSLVSMYARCGDMGQARQVFDAADERDDVSWNALVSGYVRAGAQDDMLRVFA--MMRRSG 210
Query: 110 HMLLVFPAWIIVCVLKACVCTMN--MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
L F + V+K C + + M++ VHG + K G ++ L +++ Y K
Sbjct: 211 IGLNSFA---LGSVIKCCAGSDDPVMDIAAAVHGCVVKAGFDSDVFLASAMVGMYAKKGA 267
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGH------FHQVFNDFKEMGRERIKKNSYTF 221
L +A +F + N VV+ A I CR+ + + + E+ ++ +TF
Sbjct: 268 LSEAVALFKSVLDPNVVVFNAMIAGLCRDEAAVGTDVLREALSLYSEVQSRGMEPTEFTF 327
Query: 222 SSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIV 281
SSV++AC + D G+Q+H ++K + D+++ L+D+Y + D R F V
Sbjct: 328 SSVIRACN-LAGDIEFGKQIHGQVLKHCFQGDDFIGSALIDLYLNSGCMEDGFRCFT-SV 385
Query: 282 DKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASK 338
K+++ +W AM+ G ++N L+ A + + +G++ I+ + AC+S++ ++
Sbjct: 386 PKQDVVTWTAMISGCVQNELFERALTLFHELLGAGLKPDPFTISSVMNACASLAVAR 442
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 86/326 (26%), Positives = 141/326 (43%), Gaps = 18/326 (5%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
Y ++ C+ + +A HI R + P+L N LL + G AR+L DEM
Sbjct: 20 YLHHLRSCSAPRHAAAVHA---HI-VRAHPSPSLFLRNTLLAAYCRLG--GHARRLLDEM 73
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN 132
P + S+ ++I Y + + FA +R G + + L AC
Sbjct: 74 PRTNAVSFNLLIDAYSRAGQPEASLETFARA-RRSAG---VRADRFTYAAALAACSRAGR 129
Query: 133 MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192
+ GK VH L G + + ++ SL++ Y + + A VF + V W A +
Sbjct: 130 LREGKAVHALSVLEGIAGGVFVSNSLVSMYARCGDMGQARQVFDAADERDDVSWNALVSG 189
Query: 193 NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDD-GNCGRQMHANIVKIGLE 251
R G + F M R I NS+ SV+K C G DD + +H +VK G +
Sbjct: 190 YVRAGAQDDMLRVFAMMRRSGIGLNSFALGSVIKCCAGSDDPVMDIAAAVHGCVVKAGFD 249
Query: 252 SDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYV------EA 305
SD ++ +V MY K L +A +F+ ++D N+ +NAM+ G R+ V EA
Sbjct: 250 SDVFLASAMVGMYAKKGALSEAVALFKSVLD-PNVVVFNAMIAGLCRDEAAVGTDVLREA 308
Query: 306 TKFLYLMKASGIQIQESLINDLRIAC 331
+++ G++ E + + AC
Sbjct: 309 LSLYSEVQSRGMEPTEFTFSSVIRAC 334
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 68/300 (22%), Positives = 127/300 (42%), Gaps = 13/300 (4%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGY------VDVAD 92
+ + + ++ M+ G L A LF + + + MI G V
Sbjct: 245 KAGFDSDVFLASAMVGMYAKKGALSEAVALFKSVLDPNVVVFNAMIAGLCRDEAAVGTDV 304
Query: 93 YQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNI 152
+E ++L++E+ R F + V++AC ++E GKQ+HG + K +
Sbjct: 305 LREALSLYSEVQSRGMEPTEFTFSS-----VIRACNLAGDIEFGKQIHGQVLKHCFQGDD 359
Query: 153 SLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRE 212
+ +LI+ Y C+ED F+ + + + V WTA I + F + F E+
Sbjct: 360 FIGSALIDLYLNSGCMEDGFRCFTSVPKQDVVTWTAMISGCVQNELFERALTLFHELLGA 419
Query: 213 RIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRD 272
+K + +T SSV+ AC + G Q+ K G + + MY + +
Sbjct: 420 GLKPDPFTISSVMNACASL-AVARTGEQIQCFATKSGFGRFTAMGNSCIHMYARSGDVHA 478
Query: 273 AERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
A R F+ + + +I SW+A++ + ++G +A +F M + + E + ACS
Sbjct: 479 AVRRFQEM-ESHDIVSWSAVISSHAQHGCARDALRFFNEMVDAKVVPNEITFLGVLTACS 537
>gi|302822426|ref|XP_002992871.1| hypothetical protein SELMODRAFT_136134 [Selaginella moellendorffii]
gi|300139319|gb|EFJ06062.1| hypothetical protein SELMODRAFT_136134 [Selaginella moellendorffii]
Length = 716
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 84/290 (28%), Positives = 143/290 (49%), Gaps = 18/290 (6%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+ LL M++ C ++ AR++F+ M R+ S+ MI YV ++ E + LF+ M K +
Sbjct: 170 DSLLNMYLKCDEMVEARKVFEGMKARNVRSYTAMISAYVQAGEHAEALELFSRMSKVEA- 228
Query: 110 HMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+ P A+ +L A N+E G++VH L G N+ + +L+ YGK
Sbjct: 229 ----IEPNAYTFATILGAVEGLGNLEKGRKVHRHLASRGFDTNVVVQNALVTMYGKCGSP 284
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+A VF + N + WT+ I + G+ + N FK M ++ + +FSS L AC
Sbjct: 285 VEARKVFDSMTARNVISWTSMIAAYAQHGNPQEALNLFKRMD---VEPSGVSFSSALNAC 341
Query: 229 ---GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
G +D+ GR++H +V+ L S + ++ L+ MY +C L DA RVF + ++
Sbjct: 342 ALLGALDE----GREIHHRVVEANLASPQ-METSLLSMYARCGSLDDARRVFNRM-KTRD 395
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
S NAM+ + ++G +A + M+ GI + +ACS S
Sbjct: 396 AFSCNAMIAAFTQHGRKKQALRIYRKMEQEGIPADGITFVSVLVACSHTS 445
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 78/277 (28%), Positives = 134/277 (48%), Gaps = 14/277 (5%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL M+ CG LD A+++F+ M ++D +W+ +I Y + + L+ M+
Sbjct: 71 LLQMYAKCGSLDDAKRVFEGMEIKDLFAWSSIIAAYARAGRGEMAVVLYRRMIAEGVEPN 130
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
++ F C L C + G+ +H + ++ L SL+N Y K + +A
Sbjct: 131 VVTF-----ACALGGCASVAGLADGRAIHQRILASKVPQDDVLQDSLLNMYLKCDEMVEA 185
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGR-ERIKKNSYTFSSVLKACGG 230
VF +K N +TA I + G + F M + E I+ N+YTF+++L G
Sbjct: 186 RKVFEGMKARNVRSYTAMISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATIL---GA 242
Query: 231 VDDDGNC--GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
V+ GN GR++H ++ G +++ VQ LV MYGKC +A +VF+ + +N+ S
Sbjct: 243 VEGLGNLEKGRKVHRHLASRGFDTNVVVQNALVTMYGKCGSPVEARKVFDSMT-ARNVIS 301
Query: 289 WNAMLVGYIRNGLYVEATKFLYLM--KASGIQIQESL 323
W +M+ Y ++G EA M + SG+ +L
Sbjct: 302 WTSMIAAYAQHGNPQEALNLFKRMDVEPSGVSFSSAL 338
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 109/230 (47%), Gaps = 7/230 (3%)
Query: 83 MIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGL 142
MI V + + L+ EM +R +V +I+ ++ AC +E G+++H
Sbjct: 1 MIAACVREGRPLQALELWGEMEERG-----IVADKFIVTSLVAACTKLQALEEGRRLHEH 55
Query: 143 LFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQV 202
L G +I L +L+ Y K L+DA VF ++ + W++ I R G
Sbjct: 56 LIITGFRTDIPLETALLQMYAKCGSLDDAKRVFEGMEIKDLFAWSSIIAAYARAGRGEMA 115
Query: 203 FNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVD 262
++ M E ++ N TF+ L C V + GR +H I+ + D+ +Q L++
Sbjct: 116 VVLYRRMIAEGVEPNVVTFACALGGCASVAGLAD-GRAIHQRILASKVPQDDVLQDSLLN 174
Query: 263 MYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLM 312
MY KC + +A +VFE + +N+ S+ AM+ Y++ G + EA + M
Sbjct: 175 MYLKCDEMVEARKVFEGM-KARNVRSYTAMISAYVQAGEHAEALELFSRM 223
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 118/252 (46%), Gaps = 11/252 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ CG AR++FD M R+ SW MI Y + QE + LF M G
Sbjct: 272 NALVTMYGKCGSPVEARKVFDSMTARNVISWTSMIAAYAQHGNPQEALNLFKRMDVEPSG 331
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ F + L AC ++ G+++H + + + + + SL++ Y + L+
Sbjct: 332 ---VSFSS-----ALNACALLGALDEGREIHHRVVEANLA-SPQMETSLLSMYARCGSLD 382
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
DA VF+++K + A I + G Q +++M +E I + TF SVL AC
Sbjct: 383 DARRVFNRMKTRDAFSCNAMIAAFTQHGRKKQALRIYRKMEQEGIPADGITFVSVLVACS 442
Query: 230 GVDDDGNCGRQMHANIVKIGLES-DEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
+C + + ++ G+ E+ C +VD+ G+ L DAE + E + + + +
Sbjct: 443 HTSLVADCRDFLQSLVMDHGVVPLVEHYLC-MVDVLGRSGRLGDAEELVETMPYQADAVA 501
Query: 289 WNAMLVGYIRNG 300
W +L G R+G
Sbjct: 502 WMTLLSGCKRHG 513
>gi|302762016|ref|XP_002964430.1| hypothetical protein SELMODRAFT_61701 [Selaginella moellendorffii]
gi|300168159|gb|EFJ34763.1| hypothetical protein SELMODRAFT_61701 [Selaginella moellendorffii]
Length = 603
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 79/270 (29%), Positives = 136/270 (50%), Gaps = 14/270 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L++M+ CG + A+++FD++ ++ +W V++ GY D +++ + LF EM+ R +
Sbjct: 22 NCLMIMYNRCGYVHEAQKIFDDIVWKNVFTWTVLMKGYADFGEFERSVALFREMLARGE- 80
Query: 110 HMLLVFPA--WIIVCVLKACVCTMNM-ELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166
PA + C L C+ + M E G+ VHG+ ++ S I+ +LI+ YGK
Sbjct: 81 ------PANEYTFSCAL-TCLGALRMLEQGRVVHGIAREMSFSSRITAGNALISMYGKCG 133
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
+ DA VF ++ N V W A I + G + ++ M + ++ N +F +
Sbjct: 134 SIPDAKNVFDSMQERNVVTWNALIAAYAQNGLYREIEWLLPAMEVDGVRPNKISFMGISL 193
Query: 227 ACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
A D RQ+H + +GL+ Y LV MYG+C + DAE VFE I K++
Sbjct: 194 AVPSFRDAFVSARQVHKRMFDLGLDLVGYT--ALVKMYGRCGQVEDAEVVFEGI-PWKDV 250
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASG 316
+W AM+ + +NG A ++ M+ G
Sbjct: 251 VAWTAMVTSFAQNGFSDRAFEYYRKMQLEG 280
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 71/306 (23%), Positives = 140/306 (45%), Gaps = 11/306 (3%)
Query: 29 AFELLNHIRKRV-NIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGY 87
AF + KR+ ++ L+ L+ M+ CGQ++ A +F+ +P +D +W M+ +
Sbjct: 201 AFVSARQVHKRMFDLGLDLVGYTALVKMYGRCGQVEDAEVVFEGIPWKDVVAWTAMVTSF 260
Query: 88 VDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLG 147
+ +M + V ++ ++ AC +++ + +
Sbjct: 261 AQNGFSDRAFEYYRKMQLEGR-----VPNKITLLGIVDACDSAHRC---REIRTRMERAP 312
Query: 148 SSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFK 207
+ S+ +L++ +G+ ++DA F + + N V W A I + F +V + ++
Sbjct: 313 FQSDTSVKNALLSRFGRLGSIDDARDAFKSIGKRNLVSWNAMIFALVQHQKFEEVLDAYR 372
Query: 208 EMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKC 267
++ + K + +F VL C ++D G++ H ++++ GL D ++ LV+MYG+C
Sbjct: 373 QLQLDGEKADRISFIGVLDGCAMLEDLVE-GKKAHRHVLEKGLSKDRMIRNALVNMYGRC 431
Query: 268 RLLRDAERVFELIVDKK-NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLIND 326
+ A +VFE I +K SW++M+ Y R GL EA + L M G+
Sbjct: 432 SSVEKARQVFEKIEEKDITQVSWSSMISAYARRGLPDEALELLGSMIQLGLDPDGVTFIS 491
Query: 327 LRIACS 332
L CS
Sbjct: 492 LLSGCS 497
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 69/277 (24%), Positives = 126/277 (45%), Gaps = 19/277 (6%)
Query: 32 LLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVA 91
+++ I + ++ + N L+ M+ CG + A+ +FD M R+ +W +I Y
Sbjct: 105 VVHGIAREMSFSSRITAGNALISMYGKCGSIPDAKNVFDSMQERNVVTWNALIAAYAQNG 164
Query: 92 DYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMEL--GKQVHGLLFKLGSS 149
Y+E L M + V P I + V + +QVH +F LG
Sbjct: 165 LYREIEWLLPAM------EVDGVRPNKISFMGISLAVPSFRDAFVSARQVHKRMFDLG-- 216
Query: 150 RNISLTG--SLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFK 207
+ L G +L+ YG+ +EDA+ VF + + V WTA + + + G + F ++
Sbjct: 217 --LDLVGYTALVKMYGRCGQVEDAEVVFEGIPWKDVVAWTAMVTSFAQNGFSDRAFEYYR 274
Query: 208 EMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKC 267
+M E N T ++ AC D + R++ + + +SD V+ L+ +G+
Sbjct: 275 KMQLEGRVPNKITLLGIVDAC----DSAHRCREIRTRMERAPFQSDTSVKNALLSRFGRL 330
Query: 268 RLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVE 304
+ DA F+ I K+N+ SWNAM+ +++ + E
Sbjct: 331 GSIDDARDAFKSI-GKRNLVSWNAMIFALVQHQKFEE 366
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 85/198 (42%), Gaps = 2/198 (1%)
Query: 136 GKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCR 195
GK H G N L L+ Y + + +A +F + N WT +
Sbjct: 2 GKWGHAHALSHGHRSNRYLGNCLMIMYNRCGYVHEAQKIFDDIVWKNVFTWTVLMKGYAD 61
Query: 196 EGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEY 255
G F + F+EM N YTFS L C G GR +H ++ S
Sbjct: 62 FGEFERSVALFREMLARGEPANEYTFSCAL-TCLGALRMLEQGRVVHGIAREMSFSSRIT 120
Query: 256 VQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKAS 315
L+ MYGKC + DA+ VF+ + ++N+ +WNA++ Y +NGLY E L M+
Sbjct: 121 AGNALISMYGKCGSIPDAKNVFDSM-QERNVVTWNALIAAYAQNGLYREIEWLLPAMEVD 179
Query: 316 GIQIQESLINDLRIACSS 333
G++ + + +A S
Sbjct: 180 GVRPNKISFMGISLAVPS 197
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 68/272 (25%), Positives = 120/272 (44%), Gaps = 22/272 (8%)
Query: 35 HIRKRVNIKP---TLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVA 91
IR R+ P N LL G +D AR F + R+ SW MI V
Sbjct: 303 EIRTRMERAPFQSDTSVKNALLSRFGRLGSIDDARDAFKSIGKRNLVSWNAMIFALVQHQ 362
Query: 92 DYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRN 151
++E + + ++ + + F + VL C ++ GK+ H + + G S++
Sbjct: 363 KFEEVLDAYRQLQLDGEKADRISF-----IGVLDGCAMLEDLVEGKKAHRHVLEKGLSKD 417
Query: 152 ISLTGSLINFYGKFRCLEDADFVFSQLKRHN--TVVWTAKIVNNCREGHFHQVFNDFKEM 209
+ +L+N YG+ +E A VF +++ + V W++ I R G + M
Sbjct: 418 RMIRNALVNMYGRCSSVEKARQVFEKIEEKDITQVSWSSMISAYARRGLPDEALELLGSM 477
Query: 210 GRERIKKNSYTFSSVLKAC---GGVDDDGNCGRQM-HANIVKIGLESDEYVQCGLVDMYG 265
+ + + TF S+L C G VD+ C + H + +K G+E Q +VD+ G
Sbjct: 478 IQLGLDPDGVTFISLLSGCSYGGLVDEACQCFYSLEHDHGLKPGVEH----QRIMVDVLG 533
Query: 266 KCRLLRDAERVFELIVDKKNI----ASWNAML 293
+ L +AE++ + D+KNI +W ++L
Sbjct: 534 RAGWLDEAEKMAGMASDEKNIEGGTGAWTSLL 565
>gi|78499697|gb|ABB45851.1| hypothetical protein [Eutrema halophilum]
Length = 697
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 75/280 (26%), Positives = 141/280 (50%), Gaps = 6/280 (2%)
Query: 57 VSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP 116
+ G+L ARQ+FD+MP RD SW ++ GYV +E + LF+ M G +
Sbjct: 39 IDSGKLRVARQVFDKMPRRDIKSWTAIMKGYVAATKPEEALILFSAMRVDPLG---VSGD 95
Query: 117 AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFS 176
+++ LKAC + N+ G+ +H K ++ + +L++ Y + ++ + VF+
Sbjct: 96 TYVLSVALKACGQSSNIAYGESLHAYAEKTFLLSSVFVGSALLDMYMRIGKIDKSCRVFA 155
Query: 177 QLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGR-ERIKKNSYTFSSVLKACGGVDDDG 235
++ N+V WTA I G ++ F +M R +++ +++ F+ LKAC +
Sbjct: 156 EMPFRNSVTWTAFITGLVHAGLHYEGLRYFSQMSRFKQLSSDTFAFAIALKACADLRQV- 214
Query: 236 NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
GR++H +++ G + +V L MY +C ++D R+FE + ++++ W +++
Sbjct: 215 KYGREIHTHVIVKGFAAILWVANSLATMYTECGEMQDGLRLFESM-SERDVVLWTSLITA 273
Query: 296 YIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
YIR G +A LM+ S + E AC+S+S
Sbjct: 274 YIRIGQEEKAVNTFLLMRNSQVSPNEQTFASTFAACASLS 313
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 77/315 (24%), Positives = 144/315 (45%), Gaps = 9/315 (2%)
Query: 6 LPITTDMY--TCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLD 63
L ++ D Y + +K C Q + E L+ ++ + ++ + LL M++ G++D
Sbjct: 90 LGVSGDTYVLSVALKACG-QSSNIAYGESLHAYAEKTFLLSSVFVGSALLDMYMRIGKID 148
Query: 64 TARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCV 123
+ ++F EMP R+ +W I G V + E + F++M + K+ L +
Sbjct: 149 KSCRVFAEMPFRNSVTWTAFITGLVHAGLHYEGLRYFSQMSRFKQ----LSSDTFAFAIA 204
Query: 124 LKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNT 183
LKAC ++ G+++H + G + + + SL Y + ++D +F + +
Sbjct: 205 LKACADLRQVKYGREIHTHVIVKGFAAILWVANSLATMYTECGEMQDGLRLFESMSERDV 264
Query: 184 VVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHA 243
V+WT+ I R G + N F M ++ N TF+S AC + G Q+H
Sbjct: 265 VLWTSLITAYIRIGQEEKAVNTFLLMRNSQVSPNEQTFASTFAACASLSRL-VWGEQLHG 323
Query: 244 NIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYV 303
N+ +GL V ++ MY C L A +F+ + ++I SW+ ++ GY +
Sbjct: 324 NVFSLGLGDSLSVSNSMMKMYSTCAKLDSASVLFQGM-RCRDIISWSTIIGGYSQAAFGE 382
Query: 304 EATKFLYLMKASGIQ 318
E K+ M+ +G Q
Sbjct: 383 ECFKYFSWMRQAGPQ 397
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/260 (25%), Positives = 121/260 (46%), Gaps = 7/260 (2%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L N L M+ CG++ +LF+ M RD W +I Y+ + ++ + F M
Sbjct: 233 LWVANSLATMYTECGEMQDGLRLFESMSERDVVLWTSLITAYIRIGQEEKAVNTFLLMRN 292
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
+ F + AC + G+Q+HG +F LG ++S++ S++ Y
Sbjct: 293 SQVSPNEQTFAS-----TFAACASLSRLVWGEQLHGNVFSLGLGDSLSVSNSMMKMYSTC 347
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
L+ A +F ++ + + W+ I + + F F M + + + +S+L
Sbjct: 348 AKLDSASVLFQGMRCRDIISWSTIIGGYSQAAFGEECFKYFSWMRQAGPQPTDFALASLL 407
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
+ G+ GRQ+HA + +GLE + ++ L++MY KC + +A +VFE D+ +
Sbjct: 408 -SVSGIMAVLEQGRQVHALALYLGLEQNPTIRSALINMYSKCGSIIEASKVFEE-KDRTD 465
Query: 286 IASWNAMLVGYIRNGLYVEA 305
I S AM+ GY +G EA
Sbjct: 466 IVSLTAMINGYAEHGKCEEA 485
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 71/262 (27%), Positives = 116/262 (44%), Gaps = 31/262 (11%)
Query: 45 TLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMM 104
+L N ++ M+ +C +LD+A LF M RD SW+ +I GY A +EC F+ M
Sbjct: 333 SLSVSNSMMKMYSTCAKLDSASVLFQGMRCRDIISWSTIIGGYSQAAFGEECFKYFSWM- 391
Query: 105 KRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
R+ G F + +L +E G+QVH L LG +N ++ +LIN Y K
Sbjct: 392 -RQAGPQPTDFA---LASLLSVSGIMAVLEQGRQVHALALYLGLEQNPTIRSALINMYSK 447
Query: 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
+ +A VF + R + V TA I G + + F++ + + + TF SV
Sbjct: 448 CGSIIEASKVFEEKDRTDIVSLTAMINGYAEHGKCEEAIDLFEKSLKLSFRPDDVTFISV 507
Query: 225 LKACGGVDDDGNCGRQMHANIVKIGLE-------------SDEYVQCGLVDMYGKCRLLR 271
L AC H+ + +G + + E+ C +VD+ + L
Sbjct: 508 LTACS------------HSGQLDLGFQYFNLMQENYNMRPAKEHYGC-MVDLLCRAGRLN 554
Query: 272 DAERVFELIVDKKNIASWNAML 293
DAE++ + KK+ W +L
Sbjct: 555 DAEKMINEMPWKKDDVVWTTLL 576
>gi|242076522|ref|XP_002448197.1| hypothetical protein SORBIDRAFT_06g022800 [Sorghum bicolor]
gi|241939380|gb|EES12525.1| hypothetical protein SORBIDRAFT_06g022800 [Sorghum bicolor]
Length = 766
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 87/301 (28%), Positives = 142/301 (47%), Gaps = 8/301 (2%)
Query: 32 LLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVA 91
L + R R T+L N L+ M+ CG D+AR +FD M R+ SWA +I + +
Sbjct: 69 LASSARDRFLAHNTILS-NHLITMYGRCGAPDSARVVFDGMLDRNPVSWAAVIAAHAQNS 127
Query: 92 DYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRN 151
+ + LF+ M++ G M F +C AC ++ LG+QVH K S +
Sbjct: 128 RCADAMGLFSSMLR--SGTMPDQFALGSAIC---ACSELGDLGLGRQVHAQAIKWESGSD 182
Query: 152 ISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGR 211
+ + +L+ Y K + D +F +++ + + W + I ++G F+EM
Sbjct: 183 LIVQNALVTMYSKSGSVGDGFALFERIRDKDLISWGSIIAGLAQQGREMDALQIFREMIA 242
Query: 212 ERIK-KNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLL 270
E + N + F SV +AC V + G Q+H VK L+ + Y C L DMY +C L
Sbjct: 243 EGVHHPNEFHFGSVFRACSVVVNSLEYGEQIHGVSVKYQLDRNSYAGCSLSDMYARCNEL 302
Query: 271 RDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIA 330
A +VF I + ++ SWN+++ + GL EA M+ SG++ + L A
Sbjct: 303 DSARKVFYRI-ESPDLVSWNSLINAFSAKGLLSEAMVLFSEMRDSGLRPDGITVMALLCA 361
Query: 331 C 331
C
Sbjct: 362 C 362
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 79/282 (28%), Positives = 135/282 (47%), Gaps = 10/282 (3%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+ C +LD+AR++F + D SW +I + E + LF+EM R G L
Sbjct: 295 MYARCNELDSARKVFYRIESPDLVSWNSLINAFSAKGLLSEAMVLFSEM--RDSG---LR 349
Query: 115 FPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE--DAD 172
++ +L ACV + G+ +H L KLG ++ ++ SL++ Y RCL+ A
Sbjct: 350 PDGITVMALLCACVGYDALHQGRSIHSYLVKLGLGGDVIVSNSLLSMYA--RCLDFSSAM 407
Query: 173 FVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVD 232
VF + + V W + + + H VF F + R + + ++VL A +
Sbjct: 408 DVFHETHDRDVVTWNSILTACVQHQHLEDVFKLFSLLHRSMPSLDRISLNNVLSASAELG 467
Query: 233 DDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAM 292
+Q+HA K+GL D + GL+D Y KC L DA ++FE++ +++ SW+++
Sbjct: 468 Y-FEMVKQVHAYAFKVGLVGDAMLSNGLIDTYAKCGSLDDANKLFEIMGTGRDVFSWSSL 526
Query: 293 LVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
+VGY + G EA M+ G++ + ACS +
Sbjct: 527 IVGYAQFGYAKEALDLFARMRNLGVKPNHVTFVGVLTACSRV 568
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 73/290 (25%), Positives = 131/290 (45%), Gaps = 7/290 (2%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L+ N L+ M+ G + LF+ + +D SW +I G + + +F EM+
Sbjct: 183 LIVQNALVTMYSKSGSVGDGFALFERIRDKDLISWGSIIAGLAQQGREMDALQIFREMIA 242
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMN-MELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
H + V +AC +N +E G+Q+HG+ K RN SL + Y +
Sbjct: 243 EGVHHP----NEFHFGSVFRACSVVVNSLEYGEQIHGVSVKYQLDRNSYAGCSLSDMYAR 298
Query: 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
L+ A VF +++ + V W + I +G + F EM ++ + T ++
Sbjct: 299 CNELDSARKVFYRIESPDLVSWNSLINAFSAKGLLSEAMVLFSEMRDSGLRPDGITVMAL 358
Query: 225 LKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
L AC G D + GR +H+ +VK+GL D V L+ MY +C A VF D +
Sbjct: 359 LCACVGYDAL-HQGRSIHSYLVKLGLGGDVIVSNSLLSMYARCLDFSSAMDVFHETHD-R 416
Query: 285 NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
++ +WN++L +++ + K L+ S + +N++ A + +
Sbjct: 417 DVVTWNSILTACVQHQHLEDVFKLFSLLHRSMPSLDRISLNNVLSASAEL 466
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 85/197 (43%), Gaps = 7/197 (3%)
Query: 127 CVCTMNMELGKQVHGLLFKLGS-----SRNISLTGSLINFYGKFRCLEDADFVFSQLKRH 181
C ++ G+ VH L + + N L+ LI YG+ + A VF +
Sbjct: 52 CSRLRSLPQGRLVHRHLLASSARDRFLAHNTILSNHLITMYGRCGAPDSARVVFDGMLDR 111
Query: 182 NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQM 241
N V W A I + + F M R + + S + AC + D G GRQ+
Sbjct: 112 NPVSWAAVIAAHAQNSRCADAMGLFSSMLRSGTMPDQFALGSAICACSELGDLG-LGRQV 170
Query: 242 HANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGL 301
HA +K SD VQ LV MY K + D +FE I D K++ SW +++ G + G
Sbjct: 171 HAQAIKWESGSDLIVQNALVTMYSKSGSVGDGFALFERIRD-KDLISWGSIIAGLAQQGR 229
Query: 302 YVEATKFLYLMKASGIQ 318
++A + M A G+
Sbjct: 230 EMDALQIFREMIAEGVH 246
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 50/106 (47%), Gaps = 13/106 (12%)
Query: 28 GAFELLNHIRK---RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL-RDFNSWAVM 83
G FE++ + +V + + N L+ + CG LD A +LF+ M RD SW+ +
Sbjct: 467 GYFEMVKQVHAYAFKVGLVGDAMLSNGLIDTYAKCGSLDDANKLFEIMGTGRDVFSWSSL 526
Query: 84 IVGYVDVADYQECITLFAEM--MKRKKGHMLLVFPAWIIVCVLKAC 127
IVGY +E + LFA M + K H+ V VL AC
Sbjct: 527 IVGYAQFGYAKEALDLFARMRNLGVKPNHV-------TFVGVLTAC 565
>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Cucumis sativus]
Length = 821
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 83/279 (29%), Positives = 142/279 (50%), Gaps = 9/279 (3%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+ CG ++TAR +FD M + SW M+ GYV + ++ I +F +M++ +
Sbjct: 292 MYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEG------I 345
Query: 115 FPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADF 173
P + I+ L AC ++E GK VH + +L +IS+ SLI+ Y K + ++ A
Sbjct: 346 DPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASD 405
Query: 174 VFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDD 233
+F+ L V W A I+ + G + N F EM +K +S+T SV+ A +
Sbjct: 406 IFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSV 465
Query: 234 DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
+ + +H I++ L+ + +V LVDMY KC + A ++F++I D +++ +WNAM+
Sbjct: 466 TRHA-KWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISD-RHVITWNAMI 523
Query: 294 VGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
GY +GL A MK ++ + + ACS
Sbjct: 524 DGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACS 562
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 134/285 (47%), Gaps = 9/285 (3%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+ C Q+D A ++FD MP RD SW +I G+ ++ + L M +
Sbjct: 191 MYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQR----- 245
Query: 115 FPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADF 173
P I +V VL A + +GK +HG + G ++ ++++ +L + Y K +E A
Sbjct: 246 -PDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARL 304
Query: 174 VFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDD 233
+F + + V W + + + G + F++M E I T L AC + D
Sbjct: 305 IFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGD 364
Query: 234 DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
G+ +H + ++ L SD V L+ MY KC+ + A +F + + ++ SWNAM+
Sbjct: 365 LER-GKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHV-SWNAMI 422
Query: 294 VGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASK 338
+GY +NG EA MK+ G++ + + A + +S ++
Sbjct: 423 LGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTR 467
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 77/340 (22%), Positives = 141/340 (41%), Gaps = 20/340 (5%)
Query: 6 LPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTL---------LFLNRLLLMH 56
LP T I ++ +A EL +++ I P + LF +L+ +
Sbjct: 32 LPFHTLSERAHIPSHVYKHPAAVLLELCTSMKELHQIIPLVIKNGLYNEHLFQTKLVSLF 91
Query: 57 VSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP 116
G ++ A ++F+ + + + M+ GY + + + M ++ F
Sbjct: 92 SKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNF- 150
Query: 117 AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFS 176
+LK C +++ GK++HG L + N+ ++N Y K R ++DA +F
Sbjct: 151 ----TYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFD 206
Query: 177 QLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDG- 235
++ + V W I + G + M E + +S T +VL A V G
Sbjct: 207 RMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADV---GL 263
Query: 236 -NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLV 294
G+ +H ++ G + L DMY KC + A +F+ + D+K + SWN+M+
Sbjct: 264 LMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGM-DQKTVVSWNSMMD 322
Query: 295 GYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
GY++NG +A M GI I + AC+ +
Sbjct: 323 GYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADL 362
>gi|302807080|ref|XP_002985271.1| hypothetical protein SELMODRAFT_121697 [Selaginella moellendorffii]
gi|300147099|gb|EFJ13765.1| hypothetical protein SELMODRAFT_121697 [Selaginella moellendorffii]
Length = 744
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 88/341 (25%), Positives = 154/341 (45%), Gaps = 16/341 (4%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTL----LFLNRLLLMH 56
MD+ + + ++ C S GA L I +R+ L + N ++ M+
Sbjct: 49 MDHEGVKANAITFVSVLDACA----SLGAIALGKSIHERIVADGLLGDDVILGNTIVNMY 104
Query: 57 VSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP 116
CG++D AR++F+ M ++ +W MI Y+E L EM + + P
Sbjct: 105 GKCGEVDLAREVFERMEAKNTVTWNTMIAACSRHDRYKEAFALLGEM------DLDGLRP 158
Query: 117 AWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVF 175
I +V V+ AC ++ G+ VH ++ G + ++ +L+N YGK L A
Sbjct: 159 NKITLVSVIDACAWMQSISRGRIVHEIVAGEGLESDNAVANALVNLYGKCGKLRAARHAL 218
Query: 176 SQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDG 235
++ + + WT + R GH + K M E +K +S+TF ++L++C +
Sbjct: 219 EGIETRDKISWTTLLAAYARHGHGKRAIAVIKRMDHEGVKLDSFTFVNLLESCVAIAALA 278
Query: 236 NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
G ++H + + G+E D +Q LVDMYGKC A R F+ + D +++ WNA+L
Sbjct: 279 -LGEEIHDRLAESGIELDPVLQTALVDMYGKCGNPDAARRAFDRMRDVRDVTVWNALLAA 337
Query: 296 YIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
Y+ E M G+ + AC+S++A
Sbjct: 338 YVLRDQGKETLGIFARMSLQGVAPDAVTFLSILDACASLAA 378
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 86/283 (30%), Positives = 130/283 (45%), Gaps = 8/283 (2%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+ CG + AR+ FD M +R+ SW+ MI Y + + LF M H +
Sbjct: 1 MYNRCGSVIHARRAFDAMVVRNVVSWSAMIAAYAQRGHPADALELFVRM-----DHEGVK 55
Query: 115 FPAWIIVCVLKACVCTMNMELGKQVHGLLFKLG-SSRNISLTGSLINFYGKFRCLEDADF 173
A V VL AC + LGK +H + G ++ L +++N YGK ++ A
Sbjct: 56 ANAITFVSVLDACASLGAIALGKSIHERIVADGLLGDDVILGNTIVNMYGKCGEVDLARE 115
Query: 174 VFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDD 233
VF +++ NTV W I R + + F EM + ++ N T SV+ AC +
Sbjct: 116 VFERMEAKNTVTWNTMIAACSRHDRYKEAFALLGEMDLDGLRPNKITLVSVIDACAWMQS 175
Query: 234 DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
GR +H + GLESD V LV++YGKC LR A E I + I SW +L
Sbjct: 176 ISR-GRIVHEIVAGEGLESDNAVANALVNLYGKCGKLRAARHALEGIETRDKI-SWTTLL 233
Query: 294 VGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
Y R+G A + M G+++ +L +C +I+A
Sbjct: 234 AAYARHGHGKRAIAVIKRMDHEGVKLDSFTFVNLLESCVAIAA 276
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 80/170 (47%), Gaps = 6/170 (3%)
Query: 174 VFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDD 233
F + N V W+A I + GH F M E +K N+ TF SVL AC +
Sbjct: 14 AFDAMVVRNVVSWSAMIAAYAQRGHPADALELFVRMDHEGVKANAITFVSVLDACASLGA 73
Query: 234 DGNCGRQMHANIVKIGLESDEYVQCG-LVDMYGKCRLLRDAERVFELIVDKKNIASWNAM 292
G+ +H IV GL D+ + +V+MYGKC + A VFE + + KN +WN M
Sbjct: 74 IA-LGKSIHERIVADGLLGDDVILGNTIVNMYGKCGEVDLAREVFERM-EAKNTVTWNTM 131
Query: 293 LVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS---SISASKI 339
+ R+ Y EA L M G++ + + + AC+ SIS +I
Sbjct: 132 IAACSRHDRYKEAFALLGEMDLDGLRPNKITLVSVIDACAWMQSISRGRI 181
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 74/313 (23%), Positives = 130/313 (41%), Gaps = 36/313 (11%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKR-----VNIKPTLLFLNRLLLM 55
MD+ + + + + L++ C + A L I R + + P L L+ M
Sbjct: 252 MDHEGVKLDSFTFVNLLESCV----AIAALALGEEIHDRLAESGIELDPVLQ--TALVDM 305
Query: 56 HVSCGQLDTARQLFDEM-PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
+ CG D AR+ FD M +RD W ++ YV +E + +FA M + +
Sbjct: 306 YGKCGNPDAARRAFDRMRDVRDVTVWNALLAAYVLRDQGKETLGIFARMSLQGVAPDAVT 365
Query: 115 FPAWIIVCVLKACVCTMNMELGKQVHGLLFKLG-------SSRNISLTGSLINFYGKFRC 167
F + +L AC + LG+ H + + G +S ++ LT S+IN Y K
Sbjct: 366 F-----LSILDACASLAALGLGRLTHSRMLERGLFDRQAVASADL-LTTSVINMYAKCGS 419
Query: 168 LEDADFVFSQLKR---HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
L DA F++ +R + V W+A + + G + F M +E +K +S +F S
Sbjct: 420 LADAKAEFAKARRARASDVVAWSAMVAAYSQFGLSEEALRCFYSMQQEGVKPDSVSFVSA 479
Query: 225 LKACGGVDDDGNCGRQMHANIVKI----GLESDEYVQCGLVDMYGKCRLLRDAERVFELI 280
+ C R+ A + G+ E LVD+ + +R+AE +
Sbjct: 480 IAGC----SHSGLVREAVAFFTSLRHDHGIAPTEAHFACLVDLLSRAGWIREAEALMRRA 535
Query: 281 VDKKNIASWNAML 293
+ ++W +L
Sbjct: 536 PLGAHHSTWMTLL 548
>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Vitis vinifera]
Length = 705
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 92/336 (27%), Positives = 161/336 (47%), Gaps = 17/336 (5%)
Query: 2 DNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQ 61
DN LP +I+ C K+ L++HI + + L+ M+V C +
Sbjct: 29 DNYTLPF-------VIRACRDLKNLQMG-RLIHHIVYKFGLDLDHFVCAALVDMYVKCRE 80
Query: 62 LDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI-I 120
++ AR LFD+M RD +W VMI GY + E + LF +M R++G V P + +
Sbjct: 81 IEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKM--REEG----VVPDKVAM 134
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
V V+ AC M + + + + ++ L ++I+ Y K C+E A +F +++
Sbjct: 135 VTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEE 194
Query: 181 HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQ 240
N + W+A I G + + F+ M + + T +S+L AC + + GR
Sbjct: 195 KNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDL-KNLQMGRL 253
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
+H + K GL+ D +V LVDMYGKCR + DA +F+ + ++++ +W M+ GY G
Sbjct: 254 IHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKM-PERDLVTWTVMIGGYAECG 312
Query: 301 LYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
E+ M+ G+ + + + AC+ + A
Sbjct: 313 NANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGA 348
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/296 (25%), Positives = 145/296 (48%), Gaps = 9/296 (3%)
Query: 38 KRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECI 97
+R + ++ ++ M+ CG +++AR++FD M ++ SW+ MI Y ++ +
Sbjct: 158 QRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKAL 217
Query: 98 TLFAEMMKRKKGHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTG 156
LF M+ + P I + +L AC N+++G+ +H +++K G + +
Sbjct: 218 DLFRMMLSSG------MLPDKITLASLLYACSDLKNLQMGRLIHHIVYKFGLDLDHFVCA 271
Query: 157 SLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKK 216
+L++ YGK R +EDA F+F ++ + V WT I G+ ++ F +M E +
Sbjct: 272 ALVDMYGKCREIEDARFLFDKMPERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVP 331
Query: 217 NSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERV 276
+ +V+ AC + + R + I + + D + ++DM+ KC + A +
Sbjct: 332 DKVAMVTVVFACAKL-GAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREI 390
Query: 277 FELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
F+ + ++KN+ SW+AM+ Y +G +A +M SGI + + L ACS
Sbjct: 391 FDRM-EEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACS 445
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 67/265 (25%), Positives = 126/265 (47%), Gaps = 33/265 (12%)
Query: 83 MIVGYVDVADYQECITLFAEMMK--RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVH 140
M+ G+ V DY C F E+++ + + L F V++AC N+++G+ +H
Sbjct: 1 MVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPF-------VIRACRDLKNLQMGRLIH 53
Query: 141 GLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFH 200
+++K G + + +L++ Y K R +EDA F+F +++ + V WT I G +
Sbjct: 54 HIVYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKAN 113
Query: 201 QVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQ--- 257
+ F++M E + + +V+ AC + G A I+ D+Y+Q
Sbjct: 114 ESLVLFEKMREEGVVPDKVAMVTVVFACAKL------GAMHKARII------DDYIQRKK 161
Query: 258 --------CGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFL 309
++DMY KC + A +F+ + ++KN+ SW+AM+ Y +G +A
Sbjct: 162 FQLDVILGTAMIDMYAKCGCVESAREIFDRM-EEKNVISWSAMIAAYGYHGQGRKALDLF 220
Query: 310 YLMKASGIQIQESLINDLRIACSSI 334
+M +SG+ + + L ACS +
Sbjct: 221 RMMLSSGMLPDKITLASLLYACSDL 245
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 73/275 (26%), Positives = 125/275 (45%), Gaps = 31/275 (11%)
Query: 32 LLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVA 91
L++HI + + L+ M+ C +++ AR LFD+MP RD +W VMI GY +
Sbjct: 253 LIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMPERDLVTWTVMIGGYAECG 312
Query: 92 DYQECITLFAEMMKRKKGHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSR 150
+ E + LF +M R++G V P + +V V+ AC M + + + +
Sbjct: 313 NANESLVLFDKM--REEG----VVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQL 366
Query: 151 NISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMG 210
++ L ++I+ + K C+E A +F +++ N + W+A I G + + F M
Sbjct: 367 DVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMML 426
Query: 211 RERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLE------SDEYVQCG----- 259
R I N T S+L AC HA +V+ GL D V+
Sbjct: 427 RSGILPNKITLVSLLYACS------------HAGLVEEGLRFFSLMWEDYSVRADVKHYT 474
Query: 260 -LVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
+VD+ G+ L +A ++ E + +K+ W A L
Sbjct: 475 CVVDLLGRAGRLDEALKLIESMTVEKDEGLWGAFL 509
>gi|125529330|gb|EAY77444.1| hypothetical protein OsI_05438 [Oryza sativa Indica Group]
Length = 813
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 83/287 (28%), Positives = 142/287 (49%), Gaps = 6/287 (2%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
+L LL M+ CG L AR++FD MP R+ +W+ +I G+V + + LF M+
Sbjct: 273 VLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLA 332
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
+ L I L+AC ++ +G+Q+H LL K G +++ SL++ Y K
Sbjct: 333 QG----LCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKA 388
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
++ A +F ++ +TV ++A + + G + F FK+M ++ ++ T S++
Sbjct: 389 GLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLI 448
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
AC + + GR H +++ GL S+ + L+DMY KC + + +VF ++ ++
Sbjct: 449 PACSHLAALQH-GRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMM-PSRD 506
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
I SWN M+ GY +GL EAT M G L ACS
Sbjct: 507 IVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACS 553
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 87/303 (28%), Positives = 135/303 (44%), Gaps = 19/303 (6%)
Query: 47 LFLNRLLL-MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
LF++ LL M+V C L A +F MP RD +W M+ GY Y + M
Sbjct: 160 LFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQM 219
Query: 106 RKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFK--LGSSRN--------ISL 154
+ M + P A +V +L + G VH + L S+RN + L
Sbjct: 220 Q----MHRLRPNASTLVALLPLLAQQGALAQGTSVHAYRIRACLHSNRNSKSKLTDGVLL 275
Query: 155 TGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERI 214
+L++ Y K L A VF + N V W+A I Q F FK M + +
Sbjct: 276 GTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGL 335
Query: 215 KKNSYT-FSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDA 273
S T +S L+AC +D G Q+HA + K G+ +D L+ MY K L+ A
Sbjct: 336 CFLSPTSIASALRACASLDHL-RMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQA 394
Query: 274 ERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSS 333
+F+ + K + S++A++ GY++NG EA M+A ++ + + L ACS
Sbjct: 395 IALFDEMAVKDTV-SYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSH 453
Query: 334 ISA 336
++A
Sbjct: 454 LAA 456
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 64/108 (59%), Gaps = 2/108 (1%)
Query: 206 FKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYG 265
++ M R R+ N+YTF LKAC + D +CGR +H + + GL++D +V L+DMY
Sbjct: 113 YRRMLRHRVAPNNYTFPFALKACSALADH-HCGRAIHRHAIHAGLQADLFVSTALLDMYV 171
Query: 266 KCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMK 313
KC L DA +F + +++ +WNAML GY +G+Y A L M+
Sbjct: 172 KCACLPDAAHIFA-TMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQ 218
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 70/295 (23%), Positives = 126/295 (42%), Gaps = 24/295 (8%)
Query: 56 HVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQEC--ITLFAEMMKRKKGHMLL 113
H++ G L A LFD++P D ++ +I Y + + L+ M++ +
Sbjct: 67 HIASGHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNY 126
Query: 114 VFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADF 173
FP LKAC + G+ +H G ++ ++ +L++ Y K CL DA
Sbjct: 127 TFP-----FALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAH 181
Query: 174 VFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDF--KEMGRERIKKNSYTFSSVLKACGGV 231
+F+ + + V W A + G +H +M R++ N+ T ++L
Sbjct: 182 IFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQ 241
Query: 232 DDDGNCGRQMHANIVKIGLESDE----------YVQCGLVDMYGKCRLLRDAERVFELIV 281
G +HA ++ L S+ + L+DMY KC L A RVF+ +
Sbjct: 242 GALAQ-GTSVHAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAM- 299
Query: 282 DKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQI--QESLINDLRIACSSI 334
+N +W+A++ G++ +A M A G+ S+ + LR AC+S+
Sbjct: 300 PARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALR-ACASL 353
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 66/267 (24%), Positives = 114/267 (42%), Gaps = 13/267 (4%)
Query: 31 ELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDV 90
E L+ + + + L N LL M+ G +D A LFDEM ++D S++ ++ GYV
Sbjct: 360 EQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQN 419
Query: 91 ADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSS 149
+E +F +M V P A +V ++ AC ++ G+ HG + G +
Sbjct: 420 GRAEEAFLVFKKMQACN------VEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLA 473
Query: 150 RNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEM 209
S+ +LI+ Y K ++ + VF+ + + V W I G + F EM
Sbjct: 474 SETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEM 533
Query: 210 GRERIKKNSYTFSSVLKAC--GGVDDDGNCGRQMHANIVKIGLESD-EYVQCGLVDMYGK 266
+ TF +L AC G+ +G H GL E+ C +VD+ +
Sbjct: 534 NNLGFPPDGVTFICLLSACSHSGLVIEGK--HWFHVMRHGYGLTPRMEHYIC-MVDLLSR 590
Query: 267 CRLLRDAERVFELIVDKKNIASWNAML 293
L +A + + + ++ W A+L
Sbjct: 591 GGFLDEAYEFIQSMPLRADVRVWVALL 617
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 86/193 (44%), Gaps = 19/193 (9%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ CG++D +RQ+F+ MP RD SW MI GY +E LF EM
Sbjct: 480 NALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNN---- 535
Query: 110 HMLLVFP--AWIIVCVLKACVCTMNMELGKQ-VHGLLFKLGSSRNISLTGSLINFYGKFR 166
L FP +C+L AC + + GK H + G + + +++ +
Sbjct: 536 ---LGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMRHGYGLTPRMEHYICMVDLLSRGG 592
Query: 167 CLEDA-DFVFSQLKRHNTVVWTA-----KIVNNCREGHFHQVFNDFKEMGRERIKKNSYT 220
L++A +F+ S R + VW A ++ N G +V +E+G E N
Sbjct: 593 FLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLG--KKVSRMIQELGPEG-TGNFVL 649
Query: 221 FSSVLKACGGVDD 233
S++ A G D+
Sbjct: 650 LSNIYSAAGRFDE 662
>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Cucumis sativus]
Length = 821
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 83/279 (29%), Positives = 142/279 (50%), Gaps = 9/279 (3%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+ CG ++TAR +FD M + SW M+ GYV + ++ I +F +M++ +
Sbjct: 292 MYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEG------I 345
Query: 115 FPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADF 173
P + I+ L AC ++E GK VH + +L +IS+ SLI+ Y K + ++ A
Sbjct: 346 DPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASD 405
Query: 174 VFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDD 233
+F+ L V W A I+ + G + N F EM +K +S+T SV+ A +
Sbjct: 406 IFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSV 465
Query: 234 DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
+ + +H I++ L+ + +V LVDMY KC + A ++F++I D +++ +WNAM+
Sbjct: 466 TRHA-KWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISD-RHVITWNAMI 523
Query: 294 VGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
GY +GL A MK ++ + + ACS
Sbjct: 524 DGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACS 562
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 134/285 (47%), Gaps = 9/285 (3%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+ C Q+D A ++FD MP RD SW +I G+ ++ + L M +
Sbjct: 191 MYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQR----- 245
Query: 115 FPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADF 173
P I +V VL A + +GK +HG + G ++ ++++ +L + Y K +E A
Sbjct: 246 -PDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARL 304
Query: 174 VFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDD 233
+F + + V W + + + G + F++M E I T L AC + D
Sbjct: 305 IFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGD 364
Query: 234 DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
G+ +H + ++ L SD V L+ MY KC+ + A +F + + ++ SWNAM+
Sbjct: 365 LER-GKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHV-SWNAMI 422
Query: 294 VGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASK 338
+GY +NG EA MK+ G++ + + A + +S ++
Sbjct: 423 LGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTR 467
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 77/340 (22%), Positives = 141/340 (41%), Gaps = 20/340 (5%)
Query: 6 LPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTL---------LFLNRLLLMH 56
LP T I ++ +A EL +++ I P + LF +L+ +
Sbjct: 32 LPFHTLSERAHIPSHVYKHPAAVLLELCTSMKELHQIIPLVIKNGLYNEHLFQTKLVSLF 91
Query: 57 VSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP 116
G ++ A ++F+ + + + M+ GY + + + M ++ F
Sbjct: 92 SKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNF- 150
Query: 117 AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFS 176
+LK C +++ GK++HG L + N+ ++N Y K R ++DA +F
Sbjct: 151 ----TYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFD 206
Query: 177 QLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDG- 235
++ + V W I + G + M E + +S T +VL A V G
Sbjct: 207 RMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADV---GL 263
Query: 236 -NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLV 294
G+ +H ++ G + L DMY KC + A +F+ + D+K + SWN+M+
Sbjct: 264 LMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGM-DQKTVVSWNSMMD 322
Query: 295 GYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
GY++NG +A M GI I + AC+ +
Sbjct: 323 GYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADL 362
>gi|302771271|ref|XP_002969054.1| hypothetical protein SELMODRAFT_90563 [Selaginella moellendorffii]
gi|300163559|gb|EFJ30170.1| hypothetical protein SELMODRAFT_90563 [Selaginella moellendorffii]
Length = 696
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 84/290 (28%), Positives = 143/290 (49%), Gaps = 18/290 (6%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+ LL M++ C ++ AR++F+ M R+ S+ MI YV ++ E + LF+ M K +
Sbjct: 150 DSLLNMYLKCDEMVEARKVFEGMKARNVRSYTAMISAYVQAGEHAEALELFSRMSKVEA- 208
Query: 110 HMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+ P A+ +L A N+E G++VH L G N+ + +L+ YGK
Sbjct: 209 ----IEPNAYTFATILGAVEGLGNLEKGRKVHRHLASRGFDTNVVVQNALVTMYGKCGSP 264
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+A VF + N + WT+ I + G+ + N FK M ++ + +FSS L AC
Sbjct: 265 VEARKVFDSMTARNVISWTSMIAAYAQHGNPQEALNLFKRMD---VEPSGVSFSSALNAC 321
Query: 229 ---GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
G +D+ GR++H +V+ L S + ++ L+ MY +C L DA RVF + ++
Sbjct: 322 ALLGALDE----GREIHHRVVEAHLASPQ-METSLLSMYARCGSLDDARRVFNRM-KTRD 375
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
S NAM+ + ++G +A + M+ GI + +ACS S
Sbjct: 376 AFSCNAMIAAFTQHGRKKQALRIYRRMEQEGIPADGITFVSVLVACSHTS 425
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 78/277 (28%), Positives = 134/277 (48%), Gaps = 14/277 (5%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL M+ CG LD A+++F+ M ++D +W+ +I Y + + L+ M+
Sbjct: 51 LLQMYAKCGSLDDAKRVFEGMEIKDLFAWSSIISAYARAGRGEMAVVLYRRMIAEGVEPN 110
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
++ F C L C + G+ +H + ++ L SL+N Y K + +A
Sbjct: 111 VVTF-----ACALGGCASVAGLADGRAIHQRILASKVPQDDVLQDSLLNMYLKCDEMVEA 165
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGR-ERIKKNSYTFSSVLKACGG 230
VF +K N +TA I + G + F M + E I+ N+YTF+++L A G
Sbjct: 166 RKVFEGMKARNVRSYTAMISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATILGAVEG 225
Query: 231 VDDDGNC--GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
+ GN GR++H ++ G +++ VQ LV MYGKC +A +VF+ + +N+ S
Sbjct: 226 L---GNLEKGRKVHRHLASRGFDTNVVVQNALVTMYGKCGSPVEARKVFDSMT-ARNVIS 281
Query: 289 WNAMLVGYIRNGLYVEATKFLYLM--KASGIQIQESL 323
W +M+ Y ++G EA M + SG+ +L
Sbjct: 282 WTSMIAAYAQHGNPQEALNLFKRMDVEPSGVSFSSAL 318
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 116/252 (46%), Gaps = 11/252 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ CG AR++FD M R+ SW MI Y + QE + LF M G
Sbjct: 252 NALVTMYGKCGSPVEARKVFDSMTARNVISWTSMIAAYAQHGNPQEALNLFKRMDVEPSG 311
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ F + L AC ++ G+++H + + + + + SL++ Y + L+
Sbjct: 312 ---VSFSS-----ALNACALLGALDEGREIHHRVVEAHLA-SPQMETSLLSMYARCGSLD 362
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
DA VF+++K + A I + G Q ++ M +E I + TF SVL AC
Sbjct: 363 DARRVFNRMKTRDAFSCNAMIAAFTQHGRKKQALRIYRRMEQEGIPADGITFVSVLVACS 422
Query: 230 GVDDDGNCGRQMHANIVKIGLES-DEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
+C + ++ G+ E+ C +VD+ G+ L DAE + E + + + +
Sbjct: 423 HTSLVADCRDFFQSLVMDHGVVPLVEHYLC-MVDVLGRSGRLGDAEELVETMPYQTDAVA 481
Query: 289 WNAMLVGYIRNG 300
W +L G R+G
Sbjct: 482 WMTLLSGCKRHG 493
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 98/200 (49%), Gaps = 2/200 (1%)
Query: 113 LVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDAD 172
+V +I+ ++ AC +E G+++H L G +I L +L+ Y K L+DA
Sbjct: 6 IVADKFIVTSLVAACTKLQALEEGRRLHEHLIITGFRTDIPLETALLQMYAKCGSLDDAK 65
Query: 173 FVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVD 232
VF ++ + W++ I R G ++ M E ++ N TF+ L C V
Sbjct: 66 RVFEGMEIKDLFAWSSIISAYARAGRGEMAVVLYRRMIAEGVEPNVVTFACALGGCASVA 125
Query: 233 DDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAM 292
+ GR +H I+ + D+ +Q L++MY KC + +A +VFE + +N+ S+ AM
Sbjct: 126 GLAD-GRAIHQRILASKVPQDDVLQDSLLNMYLKCDEMVEARKVFEGM-KARNVRSYTAM 183
Query: 293 LVGYIRNGLYVEATKFLYLM 312
+ Y++ G + EA + M
Sbjct: 184 ISAYVQAGEHAEALELFSRM 203
>gi|15240572|ref|NP_200385.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171613|sp|Q9FM64.1|PP431_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g55740, chloroplastic; AltName: Full=Protein
CHLORORESPIRATORY REDUCTION 21; Flags: Precursor
gi|9758608|dbj|BAB09241.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332009292|gb|AED96675.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 830
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 81/230 (35%), Positives = 120/230 (52%), Gaps = 9/230 (3%)
Query: 91 ADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGS-- 148
+ +E ++L EM R L + P I +L+ CV ++ GKQ+H + K G
Sbjct: 49 GEIKEALSLVTEMDFRN----LRIGPE-IYGEILQGCVYERDLSTGKQIHARILKNGDFY 103
Query: 149 SRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKE 208
+RN + L+ FY K LE A+ +FS+L+ N W A I CR G F E
Sbjct: 104 ARNEYIETKLVIFYAKCDALEIAEVLFSKLRVRNVFSWAAIIGVKCRIGLCEGALMGFVE 163
Query: 209 MGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCR 268
M I +++ +V KACG + GR +H +VK GLE +V L DMYGKC
Sbjct: 164 MLENEIFPDNFVVPNVCKACGALKWS-RFGRGVHGYVVKSGLEDCVFVASSLADMYGKCG 222
Query: 269 LLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
+L DA +VF+ I D+ N +WNA++VGY++NG EA + M+ G++
Sbjct: 223 VLDDASKVFDEIPDR-NAVAWNALMVGYVQNGKNEEAIRLFSDMRKQGVE 271
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 81/264 (30%), Positives = 135/264 (51%), Gaps = 9/264 (3%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+ CG LD A ++FDE+P R+ +W ++VGYV +E I LF++M RK+G V
Sbjct: 217 MYGKCGVLDDASKVFDEIPDRNAVAWNALMVGYVQNGKNEEAIRLFSDM--RKQG----V 270
Query: 115 FPAWIIVCV-LKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADF 173
P + V L A +E GKQ H + G + L SL+NFY K +E A+
Sbjct: 271 EPTRVTVSTCLSASANMGGVEEGKQSHAIAIVNGMELDNILGTSLLNFYCKVGLIEYAEM 330
Query: 174 VFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDD 233
VF ++ + V W I ++G + M E++K + T ++++ A ++
Sbjct: 331 VFDRMFEKDVVTWNLIISGYVQQGLVEDAIYMCQLMRLEKLKYDCVTLATLMSAAARTEN 390
Query: 234 DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
G+++ ++ ESD + ++DMY KC + DA++VF+ V+ K++ WN +L
Sbjct: 391 L-KLGKEVQCYCIRHSFESDIVLASTVMDMYAKCGSIVDAKKVFDSTVE-KDLILWNTLL 448
Query: 294 VGYIRNGLYVEATKFLYLMKASGI 317
Y +GL EA + Y M+ G+
Sbjct: 449 AAYAESGLSGEALRLFYGMQLEGV 472
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 85/318 (26%), Positives = 157/318 (49%), Gaps = 16/318 (5%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFL-NRLLLMHVSC 59
MD L I ++Y +++ C +++D + ++ I K + ++ +L++ + C
Sbjct: 61 MDFRNLRIGPEIYGEILQGCVYERDLSTGKQIHARILKNGDFYARNEYIETKLVIFYAKC 120
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AW 118
L+ A LF ++ +R+ SWA +I + + + F EM++ + +FP +
Sbjct: 121 DALEIAEVLFSKLRVRNVFSWAAIIGVKCRIGLCEGALMGFVEMLENE------IFPDNF 174
Query: 119 IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL 178
++ V KAC G+ VHG + K G + + SL + YGK L+DA VF ++
Sbjct: 175 VVPNVCKACGALKWSRFGRGVHGYVVKSGLEDCVFVASSLADMYGKCGVLDDASKVFDEI 234
Query: 179 KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC---GGVDDDG 235
N V W A +V + G + F +M ++ ++ T S+ L A GGV++
Sbjct: 235 PDRNAVAWNALMVGYVQNGKNEEAIRLFSDMRKQGVEPTRVTVSTCLSASANMGGVEE-- 292
Query: 236 NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
G+Q HA + G+E D + L++ Y K L+ AE VF+ + + K++ +WN ++ G
Sbjct: 293 --GKQSHAIAIVNGMELDNILGTSLLNFYCKVGLIEYAEMVFDRMFE-KDVVTWNLIISG 349
Query: 296 YIRNGLYVEATKFLYLMK 313
Y++ GL +A LM+
Sbjct: 350 YVQQGLVEDAIYMCQLMR 367
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 63/291 (21%), Positives = 120/291 (41%), Gaps = 44/291 (15%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL + G ++ A +FD M +D +W ++I GYV ++ I + ++M+ +K
Sbjct: 315 LLNFYCKVGLIEYAEMVFDRMFEKDVVTWNLIISGYVQQGLVEDAIYM-CQLMRLEK--- 370
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
L + + ++ A T N++LGK+V + +I L ++++ Y K + DA
Sbjct: 371 -LKYDCVTLATLMSAAARTENLKLGKEVQCYCIRHSFESDIVLASTVMDMYAKCGSIVDA 429
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--- 228
VF + ++W + G + F M E + N T++ ++ +
Sbjct: 430 KKVFDSTVEKDLILWNTLLAAYAESGLSGEALRLFYGMQLEGVPPNVITWNLIILSLLRN 489
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
G VD+ + QM ++ G++ N+ S
Sbjct: 490 GQVDEAKDMFLQMQSS--------------GII----------------------PNLIS 513
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKI 339
W M+ G ++NG EA FL M+ SG++ I AC+ +++ I
Sbjct: 514 WTTMMNGMVQNGCSEEAILFLRKMQESGLRPNAFSITVALSACAHLASLHI 564
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 93/202 (46%), Gaps = 20/202 (9%)
Query: 42 IKPTLLFLNRLLLMHVSCGQLDTARQLFDEMP----LRDFNSWAVMIVGYVDVADYQECI 97
+ P ++ N ++L + GQ+D A+ +F +M + + SW M+ G V +E I
Sbjct: 472 VPPNVITWNLIILSLLRNGQVDEAKDMFLQMQSSGIIPNLISWTTMMNGMVQNGCSEEAI 531
Query: 98 TLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFK-LGSSRNISLTG 156
+M + L A+ I L AC ++ +G+ +HG + + L S +S+
Sbjct: 532 LFLRKMQESG-----LRPNAFSITVALSACAHLASLHIGRTIHGYIIRNLQHSSLVSIET 586
Query: 157 SLINFYGKFRCLEDADFVF-----SQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGR 211
SL++ Y K + A+ VF S+L N ++ + N +E ++ + +G
Sbjct: 587 SLVDMYAKCGDINKAEKVFGSKLYSELPLSNAMISAYALYGNLKEA--IALYRSLEGVG- 643
Query: 212 ERIKKNSYTFSSVLKACGGVDD 233
+K ++ T ++VL AC D
Sbjct: 644 --LKPDNITITNVLSACNHAGD 663
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 59/295 (20%), Positives = 115/295 (38%), Gaps = 39/295 (13%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R + + ++ + ++ M+ CG + A+++FD +D W ++ Y + E +
Sbjct: 403 RHSFESDIVLASTVMDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAYAESGLSGEALR 462
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
LF G L P +I L N ++ + + ++ SS I
Sbjct: 463 LF-------YGMQLEGVPPNVITWNLIILSLLRNGQV-DEAKDMFLQMQSSGIIP----- 509
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
N + WT + + G + ++M ++ N+
Sbjct: 510 -----------------------NLISWTTMMNGMVQNGCSEEAILFLRKMQESGLRPNA 546
Query: 219 YTFSSVLKACGGVDDDGNCGRQMHANIVK-IGLESDEYVQCGLVDMYGKCRLLRDAERVF 277
++ + L AC + + GR +H I++ + S ++ LVDMY KC + AE+VF
Sbjct: 547 FSITVALSACAHLASL-HIGRTIHGYIIRNLQHSSLVSIETSLVDMYAKCGDINKAEKVF 605
Query: 278 ELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+ + S NAM+ Y G EA ++ G++ I ++ AC+
Sbjct: 606 GSKLYSELPLS-NAMISAYALYGNLKEAIALYRSLEGVGLKPDNITITNVLSACN 659
>gi|302769798|ref|XP_002968318.1| hypothetical protein SELMODRAFT_599 [Selaginella moellendorffii]
gi|300163962|gb|EFJ30572.1| hypothetical protein SELMODRAFT_599 [Selaginella moellendorffii]
Length = 666
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 98/340 (28%), Positives = 153/340 (45%), Gaps = 18/340 (5%)
Query: 6 LPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTA 65
LP T L Q +AG F L I + + N L+ M+ CG L A
Sbjct: 3 LPDNVSFITALKSCVRIQSLAAGKFIHLLVIES--GLLTQISVGNALVNMYGKCGSLALA 60
Query: 66 RQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI-IVCVL 124
R++FD M RD SW +I Y +E + LF M + + + P + V V+
Sbjct: 61 REVFDGMDHRDVISWNAVITAYAQAGHCKEAMELFQAMQEDGR-----IEPDSVTFVAVV 115
Query: 125 KACVCTMNMELGKQVHGLLFKLG-SSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNT 183
AC +E G ++ L+ + G ++ L +L+N Y K L+ A VF ++K +
Sbjct: 116 SACCDPSALEAGDKIFALVEERGLLDSDVVLGNALVNMYSKCGSLKSATMVFERMKIRDV 175
Query: 184 VVWTAKIVNNCREGHFHQVFNDFKEM-------GRERIKKNSYTFSSVLKACGGVDDDGN 236
V W A I R F+EM E + + +T +S L AC G +
Sbjct: 176 VSWNAIISALARHDRKDIAMQRFREMQLEGLSPKEEALLPDGFTLASALAACTGPEMLEE 235
Query: 237 CGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGY 296
GR++HA +++ G ES+ V LV MY C L+DA F+ + ++N+ SWNAM+ Y
Sbjct: 236 -GREIHALVIERGCESELVVGNALVSMYANCGTLQDALECFQKMA-QRNVVSWNAMIAAY 293
Query: 297 IRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+ + EA + + M+ G+Q ACS+ +A
Sbjct: 294 VHHNCDKEAFRIFHQMQLEGVQPNSVTFVTFLSACSTPAA 333
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/283 (28%), Positives = 130/283 (45%), Gaps = 10/283 (3%)
Query: 36 IRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQE 95
+ +R + ++ N L+ M+ CG L +A +F+ M +RD SW +I
Sbjct: 134 VEERGLLDSDVVLGNALVNMYSKCGSLKSATMVFERMKIRDVVSWNAIISALARHDRKDI 193
Query: 96 CITLFAEMMKR--KKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNIS 153
+ F EM L+ + + L AC +E G+++H L+ + G +
Sbjct: 194 AMQRFREMQLEGLSPKEEALLPDGFTLASALAACTGPEMLEEGREIHALVIERGCESELV 253
Query: 154 LTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRER 213
+ +L++ Y L+DA F ++ + N V W A I + F F +M E
Sbjct: 254 VGNALVSMYANCGTLQDALECFQKMAQRNVVSWNAMIAAYVHHNCDKEAFRIFHQMQLEG 313
Query: 214 IKKNSYTFSSVLKAC---GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLL 270
++ NS TF + L AC +D G Q+H+ + + GLE+D V +V M+ KC L
Sbjct: 314 VQPNSVTFVTFLSACSTPAAFED----GLQLHSIVRESGLEADASVGNAVVHMFAKCWSL 369
Query: 271 RDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMK 313
DA F+ I +KN+ SWN +L YI G EA K +M+
Sbjct: 370 DDALAAFQRI-PQKNLGSWNGLLGAYIHVGRLAEARKLFEVME 411
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 85/318 (26%), Positives = 137/318 (43%), Gaps = 38/318 (11%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L+ N L+ M+ +CG L A + F +M R+ SW MI YV +E +F +M
Sbjct: 252 LVVGNALVSMYANCGTLQDALECFQKMAQRNVVSWNAMIAAYVHHNCDKEAFRIFHQMQL 311
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
+ F V L AC E G Q+H ++ + G + S+ ++++ + K
Sbjct: 312 EGVQPNSVTF-----VTFLSACSTPAAFEDGLQLHSIVRESGLEADASVGNAVVHMFAKC 366
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDF------------------- 206
L+DA F ++ + N W + G + F
Sbjct: 367 WSLDDALAAFQRIPQKNLGSWNGLLGAYIHVGRLAEARKLFEVMEERDVITWNMILGAYV 426
Query: 207 -KEMGRERI-----------KKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDE 254
+EM +E + K NS T++++L AC G GR++H I + G +S+
Sbjct: 427 EREMAKEAVRLFRRMIAEGTKSNSITWTTMLGACAGEALLAE-GRRIHELIGERGADSEL 485
Query: 255 YVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKA 314
+V LVDM+GKC L A + FE I K+ +SWN ++ +NG EA K M+
Sbjct: 486 FVGNALVDMFGKCASLGGARQAFERI-RGKDASSWNVLVAALAQNGDAEEALKQFLQMQR 544
Query: 315 SGIQIQESLINDLRIACS 332
GI+ + + ACS
Sbjct: 545 EGIKPTDVTFIVVFWACS 562
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 108/250 (43%), Gaps = 17/250 (6%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N LL ++ G+L AR+LF+ M RD +W +++ YV+ +E + LF M+
Sbjct: 388 NGLLGAYIHVGRLAEARKLFEVMEERDVITWNMILGAYVEREMAKEAVRLFRRMIAEGTK 447
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ + +L AC + G+++H L+ + G+ + + +L++ +GK L
Sbjct: 448 SNSITW-----TTMLGACAGEALLAEGRRIHELIGERGADSELFVGNALVDMFGKCASLG 502
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A F +++ + W + + G + F +M RE IK TF V AC
Sbjct: 503 GARQAFERIRGKDASSWNVLVAALAQNGDAEEALKQFLQMQREGIKPTDVTFIVVFWAC- 561
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQ------CGLVDMYGKCRLLRDAERVFELIVDK 283
+ GR A + L D + G+ D+ G+ L +AE V + I
Sbjct: 562 -----SHAGRLEQAKTIFASLRHDYGIAPLPSHYSGMTDLLGRAGFLDEAEEVIKRIPFS 616
Query: 284 KNIASWNAML 293
++ W +L
Sbjct: 617 QDELPWMTLL 626
>gi|225464633|ref|XP_002274427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g52850,
chloroplastic [Vitis vinifera]
gi|302143764|emb|CBI22625.3| unnamed protein product [Vitis vinifera]
Length = 880
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 81/299 (27%), Positives = 148/299 (49%), Gaps = 10/299 (3%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
++ + + N LL ++ C + ARQLFDEMP RD SW +++ Y + +++E +
Sbjct: 43 KMGFQEDMFLSNNLLSLYGKCFGVAEARQLFDEMPCRDVASWTMLMSAYGKIGNHEEALE 102
Query: 99 LFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGS 157
LF M+ + +P + + L++C G + L+ K G N L +
Sbjct: 103 LFDSMLISGE------YPNEFTLSTALRSCSALREFNHGTRFQALVTKSGFDSNPVLGSA 156
Query: 158 LINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKN 217
LI+FY K C ++A VF + + V WT + + G + Q + M + + N
Sbjct: 157 LIDFYSKCGCTQEAYRVFEYMNNGDIVSWTMMVSSFVEAGSWSQALQLYHRMIQTGVAPN 216
Query: 218 SYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVF 277
+TF +L A + N G+ +HA+++ +E + ++ LVDMY KC+ + DA +V
Sbjct: 217 EFTFVKLLAASSFLGL--NYGKLVHAHLMMWRIELNLVLKTALVDMYCKCQSIEDAVKVS 274
Query: 278 ELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+L ++ ++ W A++ G+ ++ + EA + M+ SG+ + + ACSSI A
Sbjct: 275 KLTLE-YDVFLWTAIISGFTQSLKFREAITAFHEMETSGVVPNNFTYSGILNACSSILA 332
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/286 (27%), Positives = 136/286 (47%), Gaps = 9/286 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ + CG A ++F+ M D SW +M+ +V+ + + + L+ M++
Sbjct: 157 LIDFYSKCGCTQEAYRVFEYMNNGDIVSWTMMVSSFVEAGSWSQALQLYHRMIQTG---- 212
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
V P L A + + GK VH L N+ L +L++ Y K + +EDA
Sbjct: 213 --VAPNEFTFVKLLAASSFLGLNYGKLVHAHLMMWRIELNLVLKTALVDMYCKCQSIEDA 270
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
V ++ +WTA I + F + F EM + N++T+S +L AC +
Sbjct: 271 VKVSKLTLEYDVFLWTAIISGFTQSLKFREAITAFHEMETSGVVPNNFTYSGILNACSSI 330
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKC-RLLRDAERVFELIVDKKNIASWN 290
+ G+Q+H+ +V GLE+D V LVDMY KC ++ DA R F I N+ SW
Sbjct: 331 LAL-DLGKQIHSRVVMAGLENDVSVGNSLVDMYMKCSNMIEDAVRAFRGIA-SPNVISWT 388
Query: 291 AMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+++ G+ +GL E+ K M+ G++ ++ + AC +I +
Sbjct: 389 SLIAGFSEHGLEEESIKVFGAMQGVGVRPNSFTLSTILGACGTIKS 434
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 76/314 (24%), Positives = 147/314 (46%), Gaps = 17/314 (5%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRV---NIKPTLLFLNRLLLMHVSCGQL-DTARQL 68
Y+ ++ C+ S A +L I RV ++ + N L+ M++ C + + A +
Sbjct: 320 YSGILNACS----SILALDLGKQIHSRVVMAGLENDVSVGNSLVDMYMKCSNMIEDAVRA 375
Query: 69 FDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCVLKAC 127
F + + SW +I G+ + +E I +F M + V P ++ + +L AC
Sbjct: 376 FRGIASPNVISWTSLIAGFSEHGLEEESIKVFGAMQG------VGVRPNSFTLSTILGAC 429
Query: 128 VCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWT 187
++ +++HG + K + ++ + +L++ Y ++DA V S +K + + +T
Sbjct: 430 GTIKSLTQTRKLHGYIIKNNADNDVVVGNALVDAYAGLGMVDDAWHVTSMMKHRDVITYT 489
Query: 188 AKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVK 247
+ + G+ N M ++ ++ + ++ +S L A G+ G+Q+H VK
Sbjct: 490 SLATRINQTGNHEMALNIITHMNKDDVRMDGFSLASFLSAAAGI-PIMETGKQLHCYSVK 548
Query: 248 IGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATK 307
GL S V GLVD+YGKC + DA R F L + + + SWN ++ G NG A
Sbjct: 549 SGLGSWISVSNGLVDLYGKCGCIHDAHRSF-LEITEPDAVSWNGLIFGLASNGHVSSALS 607
Query: 308 FLYLMKASGIQIQE 321
M+ +G++ +
Sbjct: 608 AFEDMRLAGVEPDQ 621
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 93/194 (47%), Gaps = 2/194 (1%)
Query: 139 VHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGH 198
+H + K+G ++ L+ +L++ YGK + +A +F ++ + WT + + G+
Sbjct: 37 IHSPIIKMGFQEDMFLSNNLLSLYGKCFGVAEARQLFDEMPCRDVASWTMLMSAYGKIGN 96
Query: 199 FHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQC 258
+ F M N +T S+ L++C + + N G + A + K G +S+ +
Sbjct: 97 HEEALELFDSMLISGEYPNEFTLSTALRSCSAL-REFNHGTRFQALVTKSGFDSNPVLGS 155
Query: 259 GLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
L+D Y KC ++A RVFE + + +I SW M+ ++ G + +A + + M +G+
Sbjct: 156 ALIDFYSKCGCTQEAYRVFEYM-NNGDIVSWTMMVSSFVEAGSWSQALQLYHRMIQTGVA 214
Query: 319 IQESLINDLRIACS 332
E L A S
Sbjct: 215 PNEFTFVKLLAASS 228
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 104/253 (41%), Gaps = 23/253 (9%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK---R 106
N L+ + G +D A + M RD ++ + +++ + + M K R
Sbjct: 458 NALVDAYAGLGMVDDAWHVTSMMKHRDVITYTSLATRINQTGNHEMALNIITHMNKDDVR 517
Query: 107 KKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166
G L F L A ME GKQ+H K G IS++ L++ YGK
Sbjct: 518 MDGFSLASF--------LSAAAGIPIMETGKQLHCYSVKSGLGSWISVSNGLVDLYGKCG 569
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
C+ DA F ++ + V W I GH + F++M ++ + T VL
Sbjct: 570 CIHDAHRSFLEITEPDAVSWNGLIFGLASNGHVSSALSAFEDMRLAGVEPDQITCLLVLY 629
Query: 227 AC--GGVDDDG----NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELI 280
AC GG+ D G R+ H I + D YV C LVD+ G+ L +A V E +
Sbjct: 630 ACSHGGLVDMGLDYFQSMREKHG----IRPQLDHYV-C-LVDLLGRAGRLEEAMNVIETM 683
Query: 281 VDKKNIASWNAML 293
K + + +L
Sbjct: 684 PFKPDALIYKTLL 696
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 56/101 (55%), Gaps = 4/101 (3%)
Query: 234 DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
DG C +H+ I+K+G + D ++ L+ +YGKC + +A ++F+ + +++ASW ++
Sbjct: 33 DGIC---IHSPIIKMGFQEDMFLSNNLLSLYGKCFGVAEARQLFDEM-PCRDVASWTMLM 88
Query: 294 VGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
Y + G + EA + M SG E ++ +CS++
Sbjct: 89 SAYGKIGNHEEALELFDSMLISGEYPNEFTLSTALRSCSAL 129
>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
Length = 695
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 87/287 (30%), Positives = 144/287 (50%), Gaps = 17/287 (5%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ + S G + +A+++FDE+P++D SW MI GY + + +E + LF EMMK
Sbjct: 160 LITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTN---- 215
Query: 112 LLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
V P +V V+ AC + ++ELG+QVH + G N+ + +LI+ Y K +E
Sbjct: 216 --VRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVET 273
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC-- 228
A +F L + + W I + + F+EM R N T S+L AC
Sbjct: 274 ACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAH 333
Query: 229 -GGVDDDGNCGRQMHANIVK--IGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
G ++ GR +H I K G+ + + L+DMY KC + A++VF+ I++ ++
Sbjct: 334 LGAIE----IGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILN-RS 388
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
++SWNAM+ G+ +G A M+ + I+ + L ACS
Sbjct: 389 LSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACS 435
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 79/309 (25%), Positives = 131/309 (42%), Gaps = 38/309 (12%)
Query: 62 LDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIV 121
L A +F+ + + W M G+ +D + L+ M+ FP
Sbjct: 38 LPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFP----- 92
Query: 122 CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH 181
+LK+C + G+Q+HG + KLG ++ + SLI+ Y + LEDA VF Q
Sbjct: 93 FLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHR 152
Query: 182 NTVVWTAKIVNNCREGHF---HQVFND----------------------------FKEMG 210
+ V +TA I +G+ ++F++ FKEM
Sbjct: 153 DVVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMM 212
Query: 211 RERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLL 270
+ ++ + T SV+ AC GRQ+H+ I G S+ + L+D+Y KC +
Sbjct: 213 KTNVRPDESTMVSVVSACAQ-SASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEV 271
Query: 271 RDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIA 330
A +FE + K++ SWN ++ GY LY EA M SG + + + A
Sbjct: 272 ETACGLFEGL-SYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPA 330
Query: 331 CSSISASKI 339
C+ + A +I
Sbjct: 331 CAHLGAIEI 339
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 121/253 (47%), Gaps = 13/253 (5%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L +N L+ +++ CG+++TA LF+ + +D SW +I GY + Y+E + LF EM++
Sbjct: 255 LKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLR 314
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKL--GSSRNISLTGSLINFYG 163
+ + ++ +L AC +E+G+ +H + K G + S SLI+ Y
Sbjct: 315 SGESPNDVT-----MLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYA 369
Query: 164 KFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSS 223
K +E A VF + + W A I G + F+ F M + I+ + TF
Sbjct: 370 KCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVG 429
Query: 224 VLKAC---GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELI 280
+L AC G +D + R M + KI + + Y C ++D+ G L ++AE + +
Sbjct: 430 LLSACSHSGMLDLGRHIFRSMKED-YKITPKLEHY-GC-MIDLLGHSGLFKEAEEMINTM 486
Query: 281 VDKKNIASWNAML 293
+ + W ++L
Sbjct: 487 EMEPDGVIWCSLL 499
>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g23330-like [Cucumis
sativus]
Length = 712
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 78/276 (28%), Positives = 139/276 (50%), Gaps = 7/276 (2%)
Query: 57 VSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP 116
VS D+ R++F+ MP +D SW +I G Y+E + + EM G L
Sbjct: 184 VSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREM-----GGANLKPD 238
Query: 117 AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFS 176
++ + VL +++ GK++HG + G +I + SLI+ Y K + D+ VF+
Sbjct: 239 SFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFT 298
Query: 177 QLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGN 236
L + + W + I + G F + F++M +IK SY+FSS++ AC + +
Sbjct: 299 LLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTL-H 357
Query: 237 CGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGY 296
G+Q+H I + G + + ++ LVDMY KC +R A+++F+ + +++ SW AM++G
Sbjct: 358 LGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRM-RLRDMVSWTAMIMGC 416
Query: 297 IRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+G +A + M+ GI+ + ACS
Sbjct: 417 ALHGQAPDAIELFEQMETEGIKPNHVAFMAVLTACS 452
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 78/306 (25%), Positives = 141/306 (46%), Gaps = 39/306 (12%)
Query: 62 LDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIV 121
L + +LF+ + +W +I Y + + F M+ VFP+
Sbjct: 56 LHDSLRLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPS---- 111
Query: 122 CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADF-------- 173
VLK+C M++ LG+ +HG + ++G ++ +L+N Y K R LE++
Sbjct: 112 -VLKSCALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEV 170
Query: 174 ------------------------VFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEM 209
+F + + V W I N R G + + +EM
Sbjct: 171 FDEMTERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREM 230
Query: 210 GRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRL 269
G +K +S+T SSVL + D + G+++H ++ GL++D YV L+DMY KC
Sbjct: 231 GGANLKPDSFTLSSVLPLIAE-NVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTR 289
Query: 270 LRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRI 329
+ D+ RVF L+ ++ I SWN+++ G ++NGL+ E +F M + I+ + + +
Sbjct: 290 VADSCRVFTLLTERDGI-SWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMP 348
Query: 330 ACSSIS 335
AC+ ++
Sbjct: 349 ACAHLT 354
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 93/199 (46%), Gaps = 7/199 (3%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R + + + L+ M+ C ++ + ++F + RD SW +I G V + E +
Sbjct: 267 RQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLR 326
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
F +M+ K + ++ ++ AC + LGKQ+HG + + G NI + SL
Sbjct: 327 FFRQMLMAK-----IKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSL 381
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
++ Y K + A +F +++ + V WTA I+ G F++M E IK N
Sbjct: 382 VDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQMETEGIKPNH 441
Query: 219 YTFSSVLKAC--GGVDDDG 235
F +VL AC GG+ D+
Sbjct: 442 VAFMAVLTACSHGGLVDEA 460
>gi|222617563|gb|EEE53695.1| hypothetical protein OsJ_00010 [Oryza sativa Japonica Group]
Length = 1008
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 92/303 (30%), Positives = 139/303 (45%), Gaps = 15/303 (4%)
Query: 34 NHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADY 93
+H R R + N LL + C LD R+LFDEMP RD S+ V+I Y +
Sbjct: 457 SHSRSRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYA----W 512
Query: 94 QEC----ITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSS 149
+C + LF EM K +L + +L ++ +GKQ+H L LG +
Sbjct: 513 NQCAATVLRLFREMQKLGFDRQVLPY-----ATMLSVAGSLPDVHIGKQIHAQLVLLGLA 567
Query: 150 RNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEM 209
L +LI+ Y K L+ A FS + + WTA I + G + F +M
Sbjct: 568 SEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDM 627
Query: 210 GRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRL 269
R ++ + TFSS++KA + G GRQ+H+ +++ G +S + LVDMY KC
Sbjct: 628 RRAGLRPDRATFSSIIKASSSLAMIG-LGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGC 686
Query: 270 LRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRI 329
L +A R F+ + ++ +I SWNA++ Y G A K M G +
Sbjct: 687 LDEALRTFDEMPERNSI-SWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLA 745
Query: 330 ACS 332
ACS
Sbjct: 746 ACS 748
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 77/295 (26%), Positives = 137/295 (46%), Gaps = 41/295 (13%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N LL + G L AR++F EM +D ++ M++G + + + LFA M R+ G
Sbjct: 388 NTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAM--RRAG 445
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSR-----NISLTGSLINFYGK 164
+ +H L + SR N+ + SL++FY K
Sbjct: 446 YSR------------------------HPLHLLQYSHSRSRSTSVLNVFVNNSLLDFYSK 481
Query: 165 FRCLEDADFVFSQLKRHNTVVWTAKIV----NNCREGHFHQVFNDFKEMGRERIKKNSYT 220
CL+D +F ++ + V + I N C V F+EM + +
Sbjct: 482 CDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAA----TVLRLFREMQKLGFDRQVLP 537
Query: 221 FSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELI 280
++++L G + D + G+Q+HA +V +GL S++ + L+DMY KC +L A+ F
Sbjct: 538 YATMLSVAGSLPDV-HIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNR 596
Query: 281 VDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
+K I SW A++ GY++NG + EA + M+ +G++ + + + A SS++
Sbjct: 597 SEKSAI-SWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLA 650
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 118/269 (43%), Gaps = 18/269 (6%)
Query: 35 HIRKRVNIKPTLLFL-------NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGY 87
HI K+++ + LL L N L+ M+ CG LD A+ F + SW +I GY
Sbjct: 552 HIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGY 611
Query: 88 VDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLG 147
V ++E + LF++M R+ G L ++KA + LG+Q+H L + G
Sbjct: 612 VQNGQHEEALQLFSDM--RRAG---LRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSG 666
Query: 148 SSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFK 207
++ L++ Y K CL++A F ++ N++ W A I G F+
Sbjct: 667 YKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFE 726
Query: 208 EMGRERIKKNSYTFSSVLKACG--GVDDDGNCGRQMHANIVKIGLES-DEYVQCGLVDMY 264
M +S TF SVL AC G+ D+ C + H + + E+ C ++D
Sbjct: 727 GMLHCGFNPDSVTFLSVLAACSHNGLADE--CMKYFHLMKHQYSISPWKEHYAC-VIDTL 783
Query: 265 GKCRLLRDAERVFELIVDKKNIASWNAML 293
G+ +++ + K + W ++L
Sbjct: 784 GRVGCFSQVQKMLVEMPFKADPIIWTSIL 812
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 62/278 (22%), Positives = 110/278 (39%), Gaps = 40/278 (14%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
LN +L + S G L A+ LF P R+ +W +M+ + + ++LF M+
Sbjct: 291 LNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEG- 349
Query: 109 GHMLLVFPAWIIV-CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
V P + V VL CT+ +H K G ++ + +L++ Y K
Sbjct: 350 -----VIPDRVTVTTVLNLPGCTV-----PSLHPFAIKFGLDTHVFVCNTLLDAYCKHGL 399
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS-----YTFS 222
L A VF ++ + V + A ++ +EG Q F M R ++ Y+ S
Sbjct: 400 LAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGYSRHPLHLLQYSHS 459
Query: 223 SVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282
R +++ + +V L+D Y KC L D R+F+ + +
Sbjct: 460 ----------------RSRSTSVLNV------FVNNSLLDFYSKCDCLDDMRRLFDEMPE 497
Query: 283 KKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQ 320
+ N+ S+N ++ Y N + M+ G Q
Sbjct: 498 RDNV-SYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQ 534
>gi|125573515|gb|EAZ15030.1| hypothetical protein OsJ_04972 [Oryza sativa Japonica Group]
Length = 813
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 83/287 (28%), Positives = 142/287 (49%), Gaps = 6/287 (2%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
+L LL M+ CG L AR++FD MP R+ +W+ +I G+V + + LF M+
Sbjct: 273 VLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLA 332
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
+ L I L+AC ++ +G+Q+H LL K G +++ SL++ Y K
Sbjct: 333 QG----LCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKA 388
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
++ A +F ++ +TV ++A + + G + F FK+M ++ ++ T S++
Sbjct: 389 GLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLI 448
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
AC + + GR H +++ GL S+ + L+DMY KC + + +VF ++ ++
Sbjct: 449 PACSHLAALQH-GRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMM-PSRD 506
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
I SWN M+ GY +GL EAT M G L ACS
Sbjct: 507 IVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACS 553
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 86/303 (28%), Positives = 134/303 (44%), Gaps = 19/303 (6%)
Query: 47 LFLNRLLL-MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
LF++ LL M+V C L A +F MP RD +W M+ GY Y + M
Sbjct: 160 LFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQM 219
Query: 106 RKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFK--LGSSRN--------ISL 154
+ M + P A +V +L + G VH + L +RN + L
Sbjct: 220 Q----MHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLL 275
Query: 155 TGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERI 214
+L++ Y K L A VF + N V W+A I Q F FK M + +
Sbjct: 276 GTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGL 335
Query: 215 KKNSYT-FSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDA 273
S T +S L+AC +D G Q+HA + K G+ +D L+ MY K L+ A
Sbjct: 336 CFLSPTSIASALRACASLDHL-RMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQA 394
Query: 274 ERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSS 333
+F+ + K + S++A++ GY++NG EA M+A ++ + + L ACS
Sbjct: 395 IALFDEMAVKDTV-SYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSH 453
Query: 334 ISA 336
++A
Sbjct: 454 LAA 456
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 64/108 (59%), Gaps = 2/108 (1%)
Query: 206 FKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYG 265
++ M R R+ N+YTF LKAC + D +CGR +H + + GL++D +V L+DMY
Sbjct: 113 YRRMLRHRVAPNNYTFPFALKACSALADH-HCGRAIHRHAIHAGLQADLFVSTALLDMYV 171
Query: 266 KCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMK 313
KC L DA +F + +++ +WNAML GY +G+Y A L M+
Sbjct: 172 KCACLPDAAHIFA-TMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQ 218
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 72/294 (24%), Positives = 125/294 (42%), Gaps = 22/294 (7%)
Query: 56 HVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQEC--ITLFAEMMKRKKGHMLL 113
H++ G L A LFD++P D ++ +I Y + + L+ M++ +
Sbjct: 67 HIASGHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNY 126
Query: 114 VFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADF 173
FP LKAC + G+ +H G ++ ++ +L++ Y K CL DA
Sbjct: 127 TFP-----FALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAH 181
Query: 174 VFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDF--KEMGRERIKKNSYTFSSVLKACG-- 229
+F+ + + V W A + G +H +M R++ N+ T ++L
Sbjct: 182 IFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQ 241
Query: 230 -----GVDDDGNCGRQ-MHANI-VKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282
G C R +H N K L + L+DMY KC L A RVF+ +
Sbjct: 242 GALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAM-P 300
Query: 283 KKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQI--QESLINDLRIACSSI 334
+N +W+A++ G++ +A M A G+ S+ + LR AC+S+
Sbjct: 301 ARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALR-ACASL 353
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/266 (23%), Positives = 115/266 (43%), Gaps = 11/266 (4%)
Query: 31 ELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDV 90
E L+ + + + L N LL M+ G +D A LFDEM ++D S++ ++ GYV
Sbjct: 360 EQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQN 419
Query: 91 ADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSS 149
+E +F +M V P A +V ++ AC ++ G+ HG + G +
Sbjct: 420 GRAEEAFLVFKKMQACN------VEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLA 473
Query: 150 RNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEM 209
S+ +LI+ Y K ++ + VF+ + + V W I G + F EM
Sbjct: 474 SETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEM 533
Query: 210 GRERIKKNSYTFSSVLKAC--GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKC 267
+ TF +L AC G+ +G + + + + Y+ C +VD+ +
Sbjct: 534 NNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYI-C-MVDLLSRG 591
Query: 268 RLLRDAERVFELIVDKKNIASWNAML 293
L +A + + + ++ W A+L
Sbjct: 592 GFLDEAYEFIQSMPLRADVRVWVALL 617
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 86/193 (44%), Gaps = 19/193 (9%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ CG++D +RQ+F+ MP RD SW MI GY +E LF EM
Sbjct: 480 NALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNN---- 535
Query: 110 HMLLVFP--AWIIVCVLKACVCTMNMELGKQ-VHGLLFKLGSSRNISLTGSLINFYGKFR 166
L FP +C+L AC + + GK H + G + + +++ +
Sbjct: 536 ---LGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGG 592
Query: 167 CLEDA-DFVFSQLKRHNTVVWTA-----KIVNNCREGHFHQVFNDFKEMGRERIKKNSYT 220
L++A +F+ S R + VW A ++ N G +V +E+G E N
Sbjct: 593 FLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLG--KKVSRMIQELGPEG-TGNFVL 649
Query: 221 FSSVLKACGGVDD 233
S++ A G D+
Sbjct: 650 LSNIYSAAGRFDE 662
>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
wallichii]
Length = 710
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 87/287 (30%), Positives = 144/287 (50%), Gaps = 17/287 (5%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ + S G + +A+++FDE+P++D SW MI GY + + +E + LF EMMK
Sbjct: 175 LITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTN---- 230
Query: 112 LLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
V P +V V+ AC + ++ELG+QVH + G N+ + +LI+ Y K +E
Sbjct: 231 --VRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVET 288
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC-- 228
A +F L + + W I + + F+EM R N T S+L AC
Sbjct: 289 ACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAH 348
Query: 229 -GGVDDDGNCGRQMHANIVK--IGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
G ++ GR +H I K G+ + + L+DMY KC + A++VF+ I++ ++
Sbjct: 349 LGAIE----IGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILN-RS 403
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
++SWNAM+ G+ +G A M+ + I+ + L ACS
Sbjct: 404 LSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACS 450
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 79/309 (25%), Positives = 131/309 (42%), Gaps = 38/309 (12%)
Query: 62 LDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIV 121
L A +F+ + + W M G+ +D + L+ M+ FP
Sbjct: 53 LPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFP----- 107
Query: 122 CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH 181
+LK+C + G+Q+HG + KLG ++ + SLI+ Y + LEDA VF Q
Sbjct: 108 FLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHR 167
Query: 182 NTVVWTAKIVNNCREGHF---HQVFND----------------------------FKEMG 210
+ V +TA I +G+ ++F++ FKEM
Sbjct: 168 DVVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMM 227
Query: 211 RERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLL 270
+ ++ + T SV+ AC GRQ+H+ I G S+ + L+D+Y KC +
Sbjct: 228 KTNVRPDESTMVSVVSACAQ-SASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEV 286
Query: 271 RDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIA 330
A +FE + K++ SWN ++ GY LY EA M SG + + + A
Sbjct: 287 ETACGLFEGL-SYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPA 345
Query: 331 CSSISASKI 339
C+ + A +I
Sbjct: 346 CAHLGAIEI 354
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 121/253 (47%), Gaps = 13/253 (5%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L +N L+ +++ CG+++TA LF+ + +D SW +I GY + Y+E + LF EM++
Sbjct: 270 LKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLR 329
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKL--GSSRNISLTGSLINFYG 163
+ + ++ +L AC +E+G+ +H + K G + S SLI+ Y
Sbjct: 330 SGESPNDVT-----MLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYA 384
Query: 164 KFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSS 223
K +E A VF + + W A I G + F+ F M + I+ + TF
Sbjct: 385 KCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVG 444
Query: 224 VLKAC---GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELI 280
+L AC G +D + R M + KI + + Y C ++D+ G L ++AE + +
Sbjct: 445 LLSACSHSGMLDLGRHIFRSMKED-YKITPKLEHY-GC-MIDLLGHSGLFKEAEEMINTM 501
Query: 281 VDKKNIASWNAML 293
+ + W ++L
Sbjct: 502 EMEPDGVIWCSLL 514
>gi|297735121|emb|CBI17483.3| unnamed protein product [Vitis vinifera]
Length = 627
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 85/288 (29%), Positives = 139/288 (48%), Gaps = 10/288 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N+ L V G L AR++FD+M +D SW +I GYV+ D E + LF M + + G
Sbjct: 60 NKQLKELVKTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNM-RVESG 118
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
L +I+ KAC ++ G+ +HG K G ++ + +L++ Y K +
Sbjct: 119 ---LRIDPFILSLAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIF 175
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
+ VF ++ N V WTA I R G+ + F EM R R++ +SYTF+ LKAC
Sbjct: 176 EGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACA 235
Query: 230 GVDDDG--NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
D G N GR++HA +K G + +V L MY KC L +FE + +++
Sbjct: 236 ---DSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKM-SMRDVV 291
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
SW ++ ++ G A + M+ S + E + C++++
Sbjct: 292 SWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLA 339
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 77/305 (25%), Positives = 143/305 (46%), Gaps = 7/305 (2%)
Query: 31 ELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDV 90
ELL+ + + ++ + LL M+ G++ R++F EMP+R+ SW +I G V
Sbjct: 143 ELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMRNVVSWTAIITGLVRA 202
Query: 91 ADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSR 150
+E + F+EM + + + + ++ LKAC + + G+++H K G
Sbjct: 203 GYNKEALVYFSEMWRSR-----VEYDSYTFAIALKACADSGALNYGREIHAQAMKKGFDV 257
Query: 151 NISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMG 210
+ + +L Y K LE +F ++ + V WT I + G F M
Sbjct: 258 SSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMR 317
Query: 211 RERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLL 270
+ N YTF++V+ C + G Q+HA I+ +GL + V+ ++ MY KC L
Sbjct: 318 ESDVSPNEYTFAAVISGCANLARI-EWGEQLHALILHLGLAASLSVENSIMTMYAKCGQL 376
Query: 271 RDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIA 330
+ +F + +++I SW+ ++ GY + G EA + L M+ G + E + + A
Sbjct: 377 TSSSVIFHEMT-RRDIVSWSTIIAGYSQGGHVSEAFELLSWMRMEGPKPTEFALASVLSA 435
Query: 331 CSSIS 335
C +++
Sbjct: 436 CGNMA 440
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 118/254 (46%), Gaps = 17/254 (6%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L M+ CG+L+ LF++M +RD SW +I V + + + F M +
Sbjct: 263 NTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVS 322
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
F A V+ C +E G+Q+H L+ LG + ++S+ S++ Y K L
Sbjct: 323 PNEYTFAA-----VISGCANLARIEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQLT 377
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
+ +F ++ R + V W+ I + GH + F M E K + +SVL ACG
Sbjct: 378 SSSVIFHEMTRRDIVSWSTIIAGYSQGGHVSEAFELLSWMRMEGPKPTEFALASVLSACG 437
Query: 230 GVDDDGNCGRQMHANIVKIGLE----------SDEYVQCGLVDMYGKCRLLRDAERVFEL 279
+ + G+Q+HA ++ IGLE S E+ C ++D+ + L DAE + E
Sbjct: 438 NMAILEH-GKQLHAYVLSIGLEHTAMKYQISPSKEHYGC-MIDLLCRAGRLSDAEHMIEA 495
Query: 280 IVDKKNIASWNAML 293
+ ++ W+ +L
Sbjct: 496 MPFHRDDVVWSTLL 509
>gi|242092246|ref|XP_002436613.1| hypothetical protein SORBIDRAFT_10g005800 [Sorghum bicolor]
gi|241914836|gb|EER87980.1| hypothetical protein SORBIDRAFT_10g005800 [Sorghum bicolor]
Length = 683
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 85/269 (31%), Positives = 134/269 (49%), Gaps = 9/269 (3%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
+N L+ M+ G L+ AR++F+ +P R+ SW M+ G V + + LF +M +
Sbjct: 170 MNSLVDMYAKAGDLECARKVFERIPGRNVVSWTSMLSGCVQNGFAADGLLLFNKMRQDN- 228
Query: 109 GHMLLVFPA-WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
V P+ + I V+ AC + + G+ +HG + K G N ++ +L++ Y K
Sbjct: 229 -----VPPSEYTIATVITACSALIGLHQGRWMHGSVIKQGLMSNSFISAALLDMYVKCGE 283
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
LEDA VF +L + V+WT IV + G+ F + I NS T ++VL A
Sbjct: 284 LEDAQCVFDELSYIDLVLWTTMIVGYTQNGNPLDALRLFLDKKFANIVPNSVTIATVLSA 343
Query: 228 CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
+ D + GR +H VK+GL V LVDMY KC+ + +A R+F I K++
Sbjct: 344 SAQLRDL-SLGRSIHGIAVKLGLVEYTVVVNALVDMYAKCQAVSEANRIFGSI-SNKDVV 401
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASG 316
+WN+ML GY N + +A M G
Sbjct: 402 AWNSMLSGYAENNMCNDALMLFKQMSLKG 430
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 131/260 (50%), Gaps = 5/260 (1%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+LL + + G L +AR +FD P D S+ VM+ V + E + L +M +R+
Sbjct: 68 TKLLSCYAALGDLASARMVFDGTPRPDAYSYGVMLWCLVQAERHAEAVALHQDMRRRRPC 127
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+++ LKAC+ + + G ++H K+G + + SL++ Y K LE
Sbjct: 128 PE--AQDDFVLSLALKACIRSADYGYGTRLHCDAVKVGGADGFVMN-SLVDMYAKAGDLE 184
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A VF ++ N V WT+ + + G F +M ++ + + YT ++V+ AC
Sbjct: 185 CARKVFERIPGRNVVSWTSMLSGCVQNGFAADGLLLFNKMRQDNVPPSEYTIATVITACS 244
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ + GR MH +++K GL S+ ++ L+DMY KC L DA+ VF+ + ++ W
Sbjct: 245 ALIGL-HQGRWMHGSVIKQGLMSNSFISAALLDMYVKCGELEDAQCVFDEL-SYIDLVLW 302
Query: 290 NAMLVGYIRNGLYVEATKFL 309
M+VGY +NG ++A +
Sbjct: 303 TTMIVGYTQNGNPLDALRLF 322
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 69/295 (23%), Positives = 123/295 (41%), Gaps = 17/295 (5%)
Query: 6 LPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTA 65
+P + + T L + S G ++ I ++ + + +N L+ M+ C + A
Sbjct: 331 VPNSVTIATVLSASAQLRDLSLG--RSIHGIAVKLGLVEYTVVVNALVDMYAKCQAVSEA 388
Query: 66 RQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLK 125
++F + +D +W M+ GY + + + LF +M + A +V L
Sbjct: 389 NRIFGSISNKDVVAWNSMLSGYAENNMCNDALMLFKQMSLKGPSP-----DAISVVHALS 443
Query: 126 ACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVV 185
A VC ++ +GK HG K NI ++ +L+N Y K L A VF ++ N+V
Sbjct: 444 ASVCLGDLLIGKSFHGYAVKHAFLSNIYVSTALLNLYNKCGDLPSARRVFDEMNDRNSVT 503
Query: 186 WTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGR-----Q 240
W A I +G + F EM ++ + N F+S+L C R
Sbjct: 504 WCAMIGGYGMQGDSAGSIDLFGEMLKDGVHPNDVAFTSILSTCSHTGMVTAAKRYFDSMA 563
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
H NI S ++ C +VD+ + L +A + + + + + W A L G
Sbjct: 564 QHFNITP----SMKHYAC-MVDVLARAGNLEEALEFIDNMPMQADTSVWGAFLHG 613
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 99/229 (43%), Gaps = 15/229 (6%)
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
G +L + P+ C + ++ L GLL LGS R + L++ Y L
Sbjct: 30 GDLLRLLPS----CGTLPSLRVLHARLLTHTQGLL--LGSLRART---KLLSCYAALGDL 80
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERI---KKNSYTFSSVL 225
A VF R + + + + + ++M R R ++ + S L
Sbjct: 81 ASARMVFDGTPRPDAYSYGVMLWCLVQAERHAEAVALHQDMRRRRPCPEAQDDFVLSLAL 140
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
KAC D G G ++H + VK+G +D +V LVDMY K L A +VFE I +N
Sbjct: 141 KACIRSADYGY-GTRLHCDAVKVG-GADGFVMNSLVDMYAKAGDLECARKVFERI-PGRN 197
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
+ SW +ML G ++NG + M+ + E I + ACS++
Sbjct: 198 VVSWTSMLSGCVQNGFAADGLLLFNKMRQDNVPPSEYTIATVITACSAL 246
>gi|255547600|ref|XP_002514857.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545908|gb|EEF47411.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 832
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 90/320 (28%), Positives = 143/320 (44%), Gaps = 42/320 (13%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR--- 106
N +L ++V CG D A+ LFD M + SW +MI GY+ + D + + LF + +
Sbjct: 421 NSILDLYVKCGAFDYAKSLFDSMAEKGTVSWNIMIGGYLRMGDVESSLELFQSLYFKNIA 480
Query: 107 ----------KKGHMLLV-------------FPAWIIVCVLKACVCTMNMELGKQVHGLL 143
K G + F + L C +N+ELGKQ+HG +
Sbjct: 481 SWNTIIDGLMKNGFETIALELLYKMVESGLGFNSVTFSVALNLVSCLVNLELGKQIHGRI 540
Query: 144 FKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH--------NTVVWTAKIVNNCR 195
+L N + SL++ Y K +E+A +F + V W++ I R
Sbjct: 541 LRLIIHDNGFIRNSLLDMYCKCGKMEEASRMFRNVPVEISCDDPLGEIVSWSSMISGYVR 600
Query: 196 EGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC---GRQMHANIVKIGLES 252
G + F M E++ + +T +SV+ AC + C GRQ+HA+I+KIG +
Sbjct: 601 NGEYEYALRTFISMVHEQVLVDKFTLTSVVSACA----NTGCLELGRQIHAHILKIGHKV 656
Query: 253 DEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLM 312
D ++ L+DMY KC L DA+ +F+ D N+ W +M+ G +G EA + M
Sbjct: 657 DAHLGSSLIDMYAKCGSLNDAQMIFKE-NDDPNVVLWTSMIFGCALHGQGREAVRVFKCM 715
Query: 313 KASGIQIQESLINDLRIACS 332
GI E + AC+
Sbjct: 716 MNEGITPNEITFISVLTACN 735
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 87/343 (25%), Positives = 147/343 (42%), Gaps = 47/343 (13%)
Query: 31 ELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQ-LDTARQLFDEMPLRDFNSWAVMIVGYVD 89
ELL+ ++ L N LL ++ Q L A +LFDE+ RD +W ++I G+
Sbjct: 300 ELLHSNVIKIGSFHNLGITNHLLDLYAKNSQNLSHAHKLFDEILCRDVRTWTILISGFAQ 359
Query: 90 VADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGS 148
+++ LF M K V P + + VLK C + GK +HG + G
Sbjct: 360 TRNFKMVSGLFRRMQKEG------VCPNQFTLSSVLKCCSSICEIRNGKGIHGWILTSGI 413
Query: 149 SRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGH-------FHQ 201
+I L S+++ Y K + A +F + TV W I R G F
Sbjct: 414 GFDIVLENSILDLYVKCGAFDYAKSLFDSMAEKGTVSWNIMIGGYLRMGDVESSLELFQS 473
Query: 202 VF----------------NDFKEMGRERIKK--------NSYTFSSVLKACGGVDDDGNC 237
++ N F+ + E + K NS TFS L + +
Sbjct: 474 LYFKNIASWNTIIDGLMKNGFETIALELLYKMVESGLGFNSVTFSVALNLVSCLVNL-EL 532
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVF-----ELIVDKK--NIASWN 290
G+Q+H I+++ + + +++ L+DMY KC + +A R+F E+ D I SW+
Sbjct: 533 GKQIHGRILRLIIHDNGFIRNSLLDMYCKCGKMEEASRMFRNVPVEISCDDPLGEIVSWS 592
Query: 291 AMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSS 333
+M+ GY+RNG Y A + M + + + + + AC++
Sbjct: 593 SMISGYVRNGEYEYALRTFISMVHEQVLVDKFTLTSVVSACAN 635
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 100/217 (46%), Gaps = 32/217 (14%)
Query: 132 NMELGKQVHGLLFKLGSSRNISLTGSLINFYGK-FRCLEDADFVFSQLKRHNTVVWTAKI 190
N + + +H + K+GS N+ +T L++ Y K + L A +F ++ + WT I
Sbjct: 295 NHKYAELLHSNVIKIGSFHNLGITNHLLDLYAKNSQNLSHAHKLFDEILCRDVRTWTILI 354
Query: 191 VNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGL 250
+ +F V F+ M +E + N +T SSVLK C + + N G+ +H I+ G+
Sbjct: 355 SGFAQTRNFKMVSGLFRRMQKEGVCPNQFTLSSVLKCCSSICEIRN-GKGIHGWILTSGI 413
Query: 251 ESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK--------------------------- 283
D ++ ++D+Y KC A+ +F+ + +K
Sbjct: 414 GFDIVLENSILDLYVKCGAFDYAKSLFDSMAEKGTVSWNIMIGGYLRMGDVESSLELFQS 473
Query: 284 ---KNIASWNAMLVGYIRNGLYVEATKFLYLMKASGI 317
KNIASWN ++ G ++NG A + LY M SG+
Sbjct: 474 LYFKNIASWNTIIDGLMKNGFETIALELLYKMVESGL 510
>gi|357465899|ref|XP_003603234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492282|gb|AES73485.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 973
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 80/281 (28%), Positives = 141/281 (50%), Gaps = 7/281 (2%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ ++ G+++ A LF D SW M+ G+ +Y+E + LF+ M +R +
Sbjct: 440 LIDVYSKGGKMEEAELLFHNQDGFDLASWNAMMHGFTVSDNYREALRLFSLMHERGEKAD 499
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+ F KA C + ++ GKQ+H ++ K+ ++ + +++ Y K ++ A
Sbjct: 500 QITFAN-----AAKAAGCLVRLQQGKQIHAVVIKMRFHYDLFVISGILDMYLKCGEMKSA 554
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
VF+Q+ + V WT I G Q + +M ++ + YTF++++KAC +
Sbjct: 555 RKVFNQIPSPDDVAWTTVISGCVENGEEEQALFTYHQMRLAGVQPDEYTFATLVKACSLL 614
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
G+Q+HANI+K+ D +V LVDMY KC + DA +F + + +++A WNA
Sbjct: 615 TALEQ-GKQIHANIMKLNCAFDPFVMTSLVDMYAKCGNIEDAYGLFRRM-NTRSVALWNA 672
Query: 292 MLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
M+VG ++G EA F MK+ G+ + ACS
Sbjct: 673 MIVGLAQHGNAEEALNFFNEMKSRGVTPDRVTFIGVLSACS 713
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 68/241 (28%), Positives = 116/241 (48%), Gaps = 6/241 (2%)
Query: 76 DFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMEL 135
D W + Y+ + E + F +M+K + L + + +L ++EL
Sbjct: 261 DVTVWNKTLSSYLQAGEGWEAVDCFRDMIKSRVPCDSLTY-----IVILSVVASLNHLEL 315
Query: 136 GKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCR 195
GKQ+HG + + G + +S+ S IN Y K + A +F Q+K + + W I R
Sbjct: 316 GKQIHGAVVRFGWDQFVSVANSAINMYVKAGSVNYARRMFGQMKEVDLISWNTVISGCAR 375
Query: 196 EGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEY 255
G F ++ R + + +T +SVL+AC +++ GRQ+H +K G+ D +
Sbjct: 376 SGLEECSLRLFIDLLRSGLLPDQFTITSVLRACSSLEESYCVGRQVHTCALKAGIVLDSF 435
Query: 256 VQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKAS 315
V L+D+Y K + +AE +F D ++ASWNAM+ G+ + Y EA + LM
Sbjct: 436 VSTALIDVYSKGGKMEEAELLFH-NQDGFDLASWNAMMHGFTVSDNYREALRLFSLMHER 494
Query: 316 G 316
G
Sbjct: 495 G 495
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 78/289 (26%), Positives = 139/289 (48%), Gaps = 10/289 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQEC-ITLFAEMMKRKK 108
N + M+V G ++ AR++F +M D SW +I G + +EC + LF ++++
Sbjct: 336 NSAINMYVKAGSVNYARRMFGQMKEVDLISWNTVISGCAR-SGLEECSLRLFIDLLRSG- 393
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNME-LGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
L+ + I VL+AC +G+QVH K G + ++ +LI+ Y K
Sbjct: 394 ----LLPDQFTITSVLRACSSLEESYCVGRQVHTCALKAGIVLDSFVSTALIDVYSKGGK 449
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
+E+A+ +F + W A + ++ + F M K + TF++ KA
Sbjct: 450 MEEAELLFHNQDGFDLASWNAMMHGFTVSDNYREALRLFSLMHERGEKADQITFANAAKA 509
Query: 228 CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
G + G+Q+HA ++K+ D +V G++DMY KC ++ A +VF I ++A
Sbjct: 510 AGCLVRLQQ-GKQIHAVVIKMRFHYDLFVISGILDMYLKCGEMKSARKVFNQIPSPDDVA 568
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
W ++ G + NG +A + M+ +G+Q E L ACS ++A
Sbjct: 569 -WTTVISGCVENGEEEQALFTYHQMRLAGVQPDEYTFATLVKACSLLTA 616
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 62/233 (26%), Positives = 117/233 (50%), Gaps = 9/233 (3%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L ++ +L M++ CG++ +AR++F+++P D +W +I G V+ + ++ + + +M
Sbjct: 535 LFVISGILDMYLKCGEMKSARKVFNQIPSPDDVAWTTVISGCVENGEEEQALFTYHQM-- 592
Query: 106 RKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
R G V P + ++KAC +E GKQ+H + KL + + + SL++ Y K
Sbjct: 593 RLAG----VQPDEYTFATLVKACSLLTALEQGKQIHANIMKLNCAFDPFVMTSLVDMYAK 648
Query: 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
+EDA +F ++ + +W A IV + G+ + N F EM + + TF V
Sbjct: 649 CGNIEDAYGLFRRMNTRSVALWNAMIVGLAQHGNAEEALNFFNEMKSRGVTPDRVTFIGV 708
Query: 225 LKACGGVDDDGNCGRQMHANIVKIGLESD-EYVQCGLVDMYGKCRLLRDAERV 276
L AC + + + G+E + E+ C LVD + +++AE+V
Sbjct: 709 LSACSHSGLTSDAYKNFDSMQKTYGVEPEIEHYSC-LVDALSRAGHIQEAEKV 760
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 73/312 (23%), Positives = 131/312 (41%), Gaps = 34/312 (10%)
Query: 26 SAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIV 85
S A E L ++ ++ + L+ ++ ++ AR LFD MP+RD W VM+
Sbjct: 137 SPSASEALQGYAVKIGLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMMK 196
Query: 86 GYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFK 145
YV++ E + LF+ R V I++ V K V +E QV K
Sbjct: 197 AYVEMGAGDEVLGLFS-AFHRSGLRPDCVSVRTILMGVGKKTVFERELE---QVRAYATK 252
Query: 146 LGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFND 205
L F C +D+D VW + + + G + +
Sbjct: 253 L------------------FVCDDDSD----------VTVWNKTLSSYLQAGEGWEAVDC 284
Query: 206 FKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYG 265
F++M + R+ +S T+ +L ++ G+Q+H +V+ G + V ++MY
Sbjct: 285 FRDMIKSRVPCDSLTYIVILSVVASLNH-LELGKQIHGAVVRFGWDQFVSVANSAINMYV 343
Query: 266 KCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLIN 325
K + A R+F + + ++ SWN ++ G R+GL + + + SG+ + I
Sbjct: 344 KAGSVNYARRMFGQM-KEVDLISWNTVISGCARSGLEECSLRLFIDLLRSGLLPDQFTIT 402
Query: 326 DLRIACSSISAS 337
+ ACSS+ S
Sbjct: 403 SVLRACSSLEES 414
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 94/213 (44%), Gaps = 12/213 (5%)
Query: 114 VFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADF 173
+ P W +L+ + ++ LGK+ H ++ G + + +T +LI Y K L A
Sbjct: 12 LLPQWF--SILRHAIADSDLILGKRTHAVIVTSGLNPDRYVTNNLITMYAKCGSLFSARK 69
Query: 174 VF--SQLKRHNTVVWTAKIVNNCREGHFHQV------FNDFKEMGRERIKKNSYTFSSVL 225
+F + + V + A + G H V F+ F+ + + + +T S +
Sbjct: 70 LFDITPQSDRDLVTYNAILAAYAHTGELHDVEKTHEAFHIFRLLRQSVMLTTRHTLSPLF 129
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
K C + + + VKIGL+ D +V LV++Y K + +R+A +F+ + ++
Sbjct: 130 KLCL-LYGSPSASEALQGYAVKIGLQWDVFVAGALVNIYAKFQRIREARVLFDRM-PVRD 187
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
+ WN M+ Y+ G E SG++
Sbjct: 188 VVLWNVMMKAYVEMGAGDEVLGLFSAFHRSGLR 220
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 83/196 (42%), Gaps = 13/196 (6%)
Query: 42 IKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL--RDFNSWAVMIVGYV------DVADY 93
+ P N L+ M+ CG L +AR+LFD P RD ++ ++ Y DV
Sbjct: 44 LNPDRYVTNNLITMYAKCGSLFSARKLFDITPQSDRDLVTYNAILAAYAHTGELHDVEKT 103
Query: 94 QECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNIS 153
E +F R +++ + + K C+ + + + G K+G ++
Sbjct: 104 HEAFHIF-----RLLRQSVMLTTRHTLSPLFKLCLLYGSPSASEALQGYAVKIGLQWDVF 158
Query: 154 LTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRER 213
+ G+L+N Y KF+ + +A +F ++ + V+W + G +V F R
Sbjct: 159 VAGALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMMKAYVEMGAGDEVLGLFSAFHRSG 218
Query: 214 IKKNSYTFSSVLKACG 229
++ + + ++L G
Sbjct: 219 LRPDCVSVRTILMGVG 234
>gi|147853412|emb|CAN82303.1| hypothetical protein VITISV_013933 [Vitis vinifera]
Length = 549
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 85/286 (29%), Positives = 145/286 (50%), Gaps = 17/286 (5%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWA--VMIVGYVDVADYQECITLFAEMMKRKKGHML 112
M+ C Q++ A +F + P + N +A +I G++ +E + +M R +G M
Sbjct: 1 MYSKCNQMNFALSIFSD-PTHEINVFAFNAIISGFITNGFPEEGFEFYQKM--RNEGVMP 57
Query: 113 --LVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
FP C +KAC+ + + K++HGLLFK G ++ + +L+N Y KF +E
Sbjct: 58 DKFTFP-----CAIKACLDVLEI---KKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEH 109
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
A F +L + V+W A + + G F V F+ M E + + +T + +L
Sbjct: 110 AQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGILSVF-A 168
Query: 231 VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWN 290
V D N GR +H +K+G +S V L+DMYGKC+ + DA +FE++ +K+I SWN
Sbjct: 169 VMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMM-REKDIFSWN 227
Query: 291 AMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
++ + + G + + L M +GIQ + + ACS ++A
Sbjct: 228 SIXSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAA 273
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 74/280 (26%), Positives = 134/280 (47%), Gaps = 15/280 (5%)
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPA-W 118
G ++ A+ F+E+P+RD W M+ GY + ++ + F M V P+ +
Sbjct: 105 GLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDES------VVPSRF 158
Query: 119 IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL 178
+ +L ++ G+ +HG K+G ++++ SLI+ YGK +C+EDA +F +
Sbjct: 159 TVTGILSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMM 218
Query: 179 KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCG 238
+ + W + + + G M I+ + T ++VL AC + + G
Sbjct: 219 REKDIFSWNSIXSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMH-G 277
Query: 239 RQMHANIVKIGLESDE------YVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAM 292
R++H ++ GL D ++ ++DMY KC +RDA VFE + + K++ASWN M
Sbjct: 278 REIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMXN-KDVASWNIM 336
Query: 293 LVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
++GY +G EA + M ++ E + ACS
Sbjct: 337 IMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACS 376
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 79/174 (45%), Gaps = 18/174 (10%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
+L N ++ M+ CG + A +F+ M +D SW +MI+GY E + +F+ M +
Sbjct: 299 VLLKNAVIDMYAKCGSMRDAHLVFERMXNKDVASWNIMIMGYGMHGYGNEALEMFSRMCE 358
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLT----GSLINF 161
+ + F V VL AC + G+ L ++ S +++ T +I+
Sbjct: 359 VQLKPDEVTF-----VGVLSACSHAGFVSQGRN---FLAQMKSKYDVAPTIEHYTCVIDM 410
Query: 162 YGKFRCLEDA-DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERI 214
G+ L++A + + N VVW A ++ CR H H V E+ +R+
Sbjct: 411 LGRAGQLDEAYELALTMPIEANPVVWRA-LLAACRL-HKHAV---LAEVAAQRV 459
>gi|357129835|ref|XP_003566566.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g05340-like [Brachypodium distachyon]
Length = 614
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 87/288 (30%), Positives = 139/288 (48%), Gaps = 8/288 (2%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R +++ L+ N L+ M+ CG+ A ++FDEM +RD SW +I + ++ ++
Sbjct: 48 RPSLRHVLVAWNALVSMYARCGRHAEAARVFDEMRIRDSVSWNSLI----GSSGAEDALS 103
Query: 99 LFAEMMKRKKGHMLLVF-PAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGS 157
F M++ V VL AC ++ VHGL+ G +S+ +
Sbjct: 104 QFRRMLRSSSSPGGGVSCDHATFTTVLSACAREASLPTCAMVHGLVVSRGFEAEVSVGNA 163
Query: 158 LINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKN 217
L+ Y + A+ F + N + WTA I RE + F++M R + N
Sbjct: 164 LVTAYFECESPGSAERAFHGMAERNVITWTAMISGMAREELYKDSIVLFQQM-RRTVDAN 222
Query: 218 SYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVF 277
S T+SS L AC G G+Q+H +VK GLE+D +V+ GL+D+Y KC L+ D VF
Sbjct: 223 SATYSSSLLACAGSLALKE-GQQIHGLVVKAGLETDLHVESGLMDLYSKCGLMEDTLSVF 281
Query: 278 ELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLIN 325
L I S +LVG+ +NGL +A + M GI I ++++
Sbjct: 282 RLCRQPDEI-SLTVILVGFAQNGLEEKAFELFAEMAGEGILIDTNMVS 328
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 80/289 (27%), Positives = 135/289 (46%), Gaps = 8/289 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ + C +A + F M R+ +W MI G Y++ I LF +M +
Sbjct: 162 NALVTAYFECESPGSAERAFHGMAERNVITWTAMISGMAREELYKDSIVLFQQMRRTVDA 221
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ + L AC ++ ++ G+Q+HGL+ K G ++ + L++ Y K +E
Sbjct: 222 N------SATYSSSLLACAGSLALKEGQQIHGLVVKAGLETDLHVESGLMDLYSKCGLME 275
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
D VF ++ + + T +V + G + F F EM E I ++ S+VL A
Sbjct: 276 DTLSVFRLCRQPDEISLTVILVGFAQNGLEEKAFELFAEMAGEGILIDTNMVSAVLGAF- 334
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
G G+Q+HA ++K + YV GL++MY KC L ++ +VF K +I SW
Sbjct: 335 GASAPFALGKQIHALVIKKCFGRNIYVCNGLINMYSKCGELEESIQVFNETPSKNSI-SW 393
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASK 338
N+++ + R+G E K MKA G + L CS + ++K
Sbjct: 394 NSIIAAFARHGQGSEVFKLFESMKADGANPTDVTFLSLLHGCSHVGSAK 442
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 114/256 (44%), Gaps = 7/256 (2%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
+ ++ L + L+ ++ CG ++ +F D S V++VG+ ++
Sbjct: 251 KAGLETDLHVESGLMDLYSKCGLMEDTLSVFRLCRQPDEISLTVILVGFAQNGLEEKAFE 310
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
LFAEM G +L+ ++ VL A + LGKQ+H L+ K RNI + L
Sbjct: 311 LFAEM----AGEGILI-DTNMVSAVLGAFGASAPFALGKQIHALVIKKCFGRNIYVCNGL 365
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
IN Y K LE++ VF++ N++ W + I R G +VF F+ M +
Sbjct: 366 INMYSKCGELEESIQVFNETPSKNSISWNSIIAAFARHGQGSEVFKLFESMKADGANPTD 425
Query: 219 YTFSSVLKACGGVDDDGNCGRQMHANIVKIG-LESDEYVQCGLVDMYGKCRLLRDAERVF 277
TF S+L C V +++ + G L E+ C +VDM G+ LL DA
Sbjct: 426 VTFLSLLHGCSHVGSAKKGLEILNSMSSEYGILPRVEHYAC-VVDMLGRAGLLEDARSFI 484
Query: 278 ELIVDKKNIASWNAML 293
E K + W A++
Sbjct: 485 EDGPFKDSALLWQALM 500
>gi|125555495|gb|EAZ01101.1| hypothetical protein OsI_23130 [Oryza sativa Indica Group]
Length = 766
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 84/326 (25%), Positives = 147/326 (45%), Gaps = 14/326 (4%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKP------TLLFLNRLLLMHVSCGQLDTAR 66
Y L+ C+ + + H+ + P + N L+ M+ C D+AR
Sbjct: 47 YAALVSACSRLRSLPQGRRVHRHLVASSSSSPDAQLAGNTVLGNHLITMYGRCAAPDSAR 106
Query: 67 QLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKA 126
Q+FDEMP R+ SWA +I +V + + LF+ M++ + + ++A
Sbjct: 107 QVFDEMPARNPVSWASVIAAHVQNGRAGDALGLFSSMLRSGT-----AADQFALGSAVRA 161
Query: 127 CVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVW 186
C ++ G+QVH K ++ + +L+ Y K ++D +F ++K + + W
Sbjct: 162 CTELGDVGTGRQVHAHALKSERGSDLIVQNALVTMYSKNGLVDDGFMLFERIKDKDLISW 221
Query: 187 TAKIVNNCREGHFHQVFNDFKEMGRE-RIKKNSYTFSSVLKACGGVDDDGNCGRQMHANI 245
+ I ++G + F++M E N + F S +ACG V G Q+H
Sbjct: 222 GSIIAGFAQQGFEMEALQVFRKMIVEGSHHPNEFHFGSAFRACGAV-GSWEYGEQIHGLS 280
Query: 246 VKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEA 305
+K L+ D YV C L DMY + + L D+ RV ++ ++ SWN+++ Y GL EA
Sbjct: 281 IKYRLDRDLYVGCSLSDMYARFKNL-DSARVAFYRIEAPDLVSWNSIVNAYSVEGLLSEA 339
Query: 306 TKFLYLMKASGIQIQESLINDLRIAC 331
M+ SG++ + L AC
Sbjct: 340 LVLFSEMRDSGLRPDGITVRGLLCAC 365
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 79/281 (28%), Positives = 132/281 (46%), Gaps = 8/281 (2%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+ LD+AR F + D SW ++ Y E + LF+EM R G +
Sbjct: 298 MYARFKNLDSARVAFYRIEAPDLVSWNSIVNAYSVEGLLSEALVLFSEM--RDSG----L 351
Query: 115 FPAWIIV-CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADF 173
P I V +L ACV + G+ +H L KLG ++S+ SL++ Y + L A
Sbjct: 352 RPDGITVRGLLCACVGRDALYHGRLIHSYLVKLGLDGDVSVCNSLLSMYARCSDLSSAMD 411
Query: 174 VFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDD 233
VF ++K + V W + + + H +V F + + + + ++VL A +
Sbjct: 412 VFHEIKDQDVVTWNSILTACAQHNHPEEVLKLFSLLNKSEPSLDRISLNNVLSASAELGY 471
Query: 234 DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
+Q+HA K GL D + L+D Y KC L DA R+FE++ + +++ SW++++
Sbjct: 472 -FEMVKQVHAYAFKAGLVDDRMLSNTLIDTYAKCGSLDDAMRLFEIMGNNRDVFSWSSLI 530
Query: 294 VGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
VGY + G EA M++ GI+ + ACS +
Sbjct: 531 VGYAQFGYAKEALDLFSRMRSLGIRPNHVTFIGVLTACSRV 571
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 80/318 (25%), Positives = 143/318 (44%), Gaps = 7/318 (2%)
Query: 17 IKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRD 76
++ CT D ++ H K L+ N L+ M+ G +D LF+ + +D
Sbjct: 159 VRACTELGDVGTGRQVHAHALKSER-GSDLIVQNALVTMYSKNGLVDDGFMLFERIKDKD 217
Query: 77 FNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELG 136
SW +I G+ E + +F +M+ H + +AC + E G
Sbjct: 218 LISWGSIIAGFAQQGFEMEALQVFRKMIVEGSHHP----NEFHFGSAFRACGAVGSWEYG 273
Query: 137 KQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCRE 196
+Q+HGL K R++ + SL + Y +F+ L+ A F +++ + V W + + E
Sbjct: 274 EQIHGLSIKYRLDRDLYVGCSLSDMYARFKNLDSARVAFYRIEAPDLVSWNSIVNAYSVE 333
Query: 197 GHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYV 256
G + F EM ++ + T +L AC G D + GR +H+ +VK+GL+ D V
Sbjct: 334 GLLSEALVLFSEMRDSGLRPDGITVRGLLCACVGRDALYH-GRLIHSYLVKLGLDGDVSV 392
Query: 257 QCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASG 316
L+ MY +C L A VF I D +++ +WN++L ++ E K L+ S
Sbjct: 393 CNSLLSMYARCSDLSSAMDVFHEIKD-QDVVTWNSILTACAQHNHPEEVLKLFSLLNKSE 451
Query: 317 IQIQESLINDLRIACSSI 334
+ +N++ A + +
Sbjct: 452 PSLDRISLNNVLSASAEL 469
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 28 GAFELLNHIRK---RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMP-LRDFNSWAVM 83
G FE++ + + + + N L+ + CG LD A +LF+ M RD SW+ +
Sbjct: 470 GYFEMVKQVHAYAFKAGLVDDRMLSNTLIDTYAKCGSLDDAMRLFEIMGNNRDVFSWSSL 529
Query: 84 IVGYVDVADYQECITLFAEM 103
IVGY +E + LF+ M
Sbjct: 530 IVGYAQFGYAKEALDLFSRM 549
Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 8/104 (7%)
Query: 238 GRQMHANIVKIGLESDEYVQCG-------LVDMYGKCRLLRDAERVFELIVDKKNIASWN 290
GR++H ++V S + G L+ MYG+C A +VF+ + +N SW
Sbjct: 63 GRRVHRHLVASSSSSPDAQLAGNTVLGNHLITMYGRCAAPDSARQVFDEM-PARNPVSWA 121
Query: 291 AMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
+++ +++NG +A M SG + + AC+ +
Sbjct: 122 SVIAAHVQNGRAGDALGLFSSMLRSGTAADQFALGSAVRACTEL 165
>gi|296082168|emb|CBI21173.3| unnamed protein product [Vitis vinifera]
Length = 654
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 83/288 (28%), Positives = 144/288 (50%), Gaps = 8/288 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N ++ + CG++ A ++F E RD SW MI G+V++ +++ + F + MKR
Sbjct: 38 NNIISGYAKCGEIRIASKMFGETSQRDAVSWNTMIAGFVNLGNFETALE-FLKSMKRYG- 95
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ +LK C +E+G+QVH ++ K+G N+ +L++ Y K +E
Sbjct: 96 ---FAVDGYSFGSILKGVACVGYVEVGQQVHSMMVKMGYEGNVFAGSALLDMYAKCERVE 152
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
DA VF + N+V W A I + G F M E ++ + TF+ +L
Sbjct: 153 DAFEVFKSINIRNSVTWNALISGYAQVGDRGTAFWLLDCMELEGVEIDDGTFAPLLTLLD 212
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI--A 287
D Q+HA IVK GL SD V ++ Y +C + DAERVF+ ++ +++
Sbjct: 213 DPDLH-KLTTQVHAKIVKHGLASDTTVCNAIITAYSECGSIEDAERVFDGAIETRDLDHV 271
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
SWN++L G+ ++GL +A KF M++ + I + + +CS ++
Sbjct: 272 SWNSILTGFSQSGLSEDALKFFENMRSQYVVIDHYAFSAVLRSCSDLA 319
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 71/290 (24%), Positives = 132/290 (45%), Gaps = 18/290 (6%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFA----EMMKRK 107
LL M+ C +++ A ++F + +R+ +W +I GY V D L E ++
Sbjct: 141 LLDMYAKCERVEDAFEVFKSINIRNSVTWNALISGYAQVGDRGTAFWLLDCMELEGVEID 200
Query: 108 KGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
G +L +L QVH + K G + + ++ ++I Y +
Sbjct: 201 DG---------TFAPLLTLLDDPDLHKLTTQVHAKIVKHGLASDTTVCNAIITAYSECGS 251
Query: 168 LEDADFVFS---QLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
+EDA+ VF + + + V W + + + G F+ M + + + Y FS+V
Sbjct: 252 IEDAERVFDGAIETRDLDHVSWNSILTGFSQSGLSEDALKFFENMRSQYVVIDHYAFSAV 311
Query: 225 LKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
L++C + G+Q+H ++K G E + +V L+ MY KC ++ DA + F+
Sbjct: 312 LRSCSDLATL-QLGQQVHVLVLKSGFEPNGFVASSLIFMYSKCGVIEDARKSFDATPKDS 370
Query: 285 NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
+IA WN+++ GY ++G A +LMK +++ + ACS I
Sbjct: 371 SIA-WNSLIFGYAQHGRGKIALDLFFLMKDRRVKLDHITFVAVLTACSHI 419
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 92/184 (50%), Gaps = 6/184 (3%)
Query: 140 HGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHF 199
H L K G++ +I ++I+ Y K + A +F + + + V W I G+F
Sbjct: 22 HCLAIKSGTTASIYTANNIISGYAKCGEIRIASKMFGETSQRDAVSWNTMIAGFVNLGNF 81
Query: 200 HQVFNDFKEMGRERIKKNSYTFSSVLK--ACGGVDDDGNCGRQMHANIVKIGLESDEYVQ 257
K M R + Y+F S+LK AC G + G+Q+H+ +VK+G E + +
Sbjct: 82 ETALEFLKSMKRYGFAVDGYSFGSILKGVACVGYVE---VGQQVHSMMVKMGYEGNVFAG 138
Query: 258 CGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGI 317
L+DMY KC + DA VF+ I + +N +WNA++ GY + G A L M+ G+
Sbjct: 139 SALLDMYAKCERVEDAFEVFKSI-NIRNSVTWNALISGYAQVGDRGTAFWLLDCMELEGV 197
Query: 318 QIQE 321
+I +
Sbjct: 198 EIDD 201
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/260 (24%), Positives = 114/260 (43%), Gaps = 34/260 (13%)
Query: 50 NRLLLMHVSCGQLDTARQLFD-EMPLRDFN--SWAVMIVGYVDVADYQECITLFAEMMKR 106
N ++ + CG ++ A ++FD + RD + SW ++ G+ ++ + F M +
Sbjct: 240 NAIITAYSECGSIEDAERVFDGAIETRDLDHVSWNSILTGFSQSGLSEDALKFFENMRSQ 299
Query: 107 KKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166
+V + VL++C ++LG+QVH L+ K G N + SLI Y K
Sbjct: 300 -----YVVIDHYAFSAVLRSCSDLATLQLGQQVHVLVLKSGFEPNGFVASSLIFMYSKCG 354
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
+EDA F + +++ W + I + G + F M R+K + TF +VL
Sbjct: 355 VIEDARKSFDATPKDSSIAWNSLIFGYAQHGRGKIALDLFFLMKDRRVKLDHITFVAVLT 414
Query: 227 ACGGVDDDGNCGRQMHANIVKIG------LESD-------EYVQCGLVDMYGKCRLLRDA 273
AC H +V+ G +ESD E+ C ++D+ G+ L +A
Sbjct: 415 ACS------------HIGLVEEGWSFLKSMESDYGIPPRMEHYAC-MIDLLGRAGRLDEA 461
Query: 274 ERVFELIVDKKNIASWNAML 293
+ + E + + + W +L
Sbjct: 462 KALIEAMPFEPDAMVWKTLL 481
>gi|356521885|ref|XP_003529581.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g15720-like [Glycine max]
Length = 603
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 136/285 (47%), Gaps = 10/285 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ ++ +D A++LFDEMP R+ SW ++ GYV + LF +M
Sbjct: 63 NHLINCYLRLFTIDHAQKLFDEMPHRNVVSWTSLMAGYVSQGQPNMALCLFHQMQGT--- 119
Query: 110 HMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
LV P + ++ AC N+E+G+++H L+ G N+ SLI+ YGK +
Sbjct: 120 ---LVLPNEFTFATLINACSILANLEIGRRIHALVEVSGLGSNLVACSSLIDMYGKCNHV 176
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERI-KKNSYTFSSVLKA 227
++A +F + N V WT+ I + H FKE R+ K N + S + A
Sbjct: 177 DEARLIFDSMCTRNVVSWTSMITTYSQNAQGHHALQLFKEFNHSRLDKPNHFMLCSAVSA 236
Query: 228 CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
C + G+ G+ H ++++G E+ + + LVDMY KC + + ++F I ++
Sbjct: 237 CASLGSLGS-GKITHGVVIRLGHEASDVIASALVDMYAKCGCVNYSAKIFRRI-QNPSVI 294
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+ +M+VG + GL + + + M I+ + + ACS
Sbjct: 295 PYTSMIVGAAKYGLGILSLQLFQEMVVRRIKPNDITFVGVLHACS 339
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 94/207 (45%), Gaps = 18/207 (8%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L+ + L+ M+ C +D AR +FD M R+ SW MI Y A + LF E
Sbjct: 160 LVACSSLIDMYGKCNHVDEARLIFDSMCTRNVVSWTSMITTYSQNAQGHHALQLFKEF-- 217
Query: 106 RKKGHMLLVFPAWIIVC-VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
H L P ++C + AC ++ GK HG++ +LG + + +L++ Y K
Sbjct: 218 ---NHSRLDKPNHFMLCSAVSACASLGSLGSGKITHGVVIRLGHEASDVIASALVDMYAK 274
Query: 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
C+ + +F +++ + + +T+ IV + G F+EM RIK N TF V
Sbjct: 275 CGCVNYSAKIFRRIQNPSVIPYTSMIVGAAKYGLGILSLQLFQEMVVRRIKPNDITFVGV 334
Query: 225 LKACGGVDDDGNCGRQMHANIVKIGLE 251
L AC H+ +V GLE
Sbjct: 335 LHACS------------HSGLVDKGLE 349
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 81/163 (49%), Gaps = 2/163 (1%)
Query: 138 QVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREG 197
H + K G S + T LIN Y + ++ A +F ++ N V WT+ + +G
Sbjct: 45 STHSNVVKSGLSNDTFATNHLINCYLRLFTIDHAQKLFDEMPHRNVVSWTSLMAGYVSQG 104
Query: 198 HFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQ 257
+ F +M + N +TF++++ AC + + GR++HA + GL S+
Sbjct: 105 QPNMALCLFHQMQGTLVLPNEFTFATLINAC-SILANLEIGRRIHALVEVSGLGSNLVAC 163
Query: 258 CGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
L+DMYGKC + +A +F+ + +N+ SW +M+ Y +N
Sbjct: 164 SSLIDMYGKCNHVDEARLIFDSMC-TRNVVSWTSMITTYSQNA 205
Score = 44.7 bits (104), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 53/112 (47%), Gaps = 5/112 (4%)
Query: 221 FSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELI 280
F + L+ C D H+N+VK GL +D + L++ Y + + A+++F+ +
Sbjct: 30 FVAKLQTC----KDLTSATSTHSNVVKSGLSNDTFATNHLINCYLRLFTIDHAQKLFDEM 85
Query: 281 VDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+N+ SW +++ GY+ G A + M+ + + E L ACS
Sbjct: 86 -PHRNVVSWTSLMAGYVSQGQPNMALCLFHQMQGTLVLPNEFTFATLINACS 136
>gi|12957718|gb|AAK09236.1|AC084320_23 hypothetical protein [Oryza sativa Japonica Group]
gi|108711388|gb|ABF99183.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
Length = 843
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 88/311 (28%), Positives = 150/311 (48%), Gaps = 11/311 (3%)
Query: 32 LLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVA 91
L++ + + + + + L+ M+ + G L ARQ+FD M RD W VM+ GYV
Sbjct: 167 LVHRTARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDGYVKAG 226
Query: 92 DYQECITLFAEMMKRKKGHMLLVFPAW-IIVCVLKACVCTMNMELGKQVHGLLFKLGSSR 150
+ LF +M R G P + + C L ++ G Q+H L K G
Sbjct: 227 SVSSAVELFGDM--RASG----CEPNFATLACFLSVSATESDLFFGVQLHTLAVKYGLES 280
Query: 151 NISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMG 210
+++ +L++ Y K +CL+D +F + R + V W I + G Q F +M
Sbjct: 281 EVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQ 340
Query: 211 RERIKKNSYTFSSVLKACGGVDDDG-NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRL 269
+ I+ +S T S+L A D +G N G+++H IV+ + D ++ LVD+Y KCR
Sbjct: 341 KSGIRPDSVTLVSLLPAL--TDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKCRA 398
Query: 270 LRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRI 329
+R A+ V++ ++ + M+ GY+ NG+ EA K + GI+ I +
Sbjct: 399 VRMAQSVYD-SSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLP 457
Query: 330 ACSSISASKIN 340
AC+S++A K+
Sbjct: 458 ACASMAAMKLG 468
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 79/288 (27%), Positives = 141/288 (48%), Gaps = 9/288 (3%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
+ ++ L+ ++ C + A+ ++D D + MI GYV QE + +F +++
Sbjct: 383 VFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLE 442
Query: 106 RKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
+ + P A I VL AC M+LG+++H K + +L++ Y K
Sbjct: 443 QG------IRPNAVAIASVLPACASMAAMKLGQELHSYALKNAYEGRCYVESALMDMYAK 496
Query: 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
L+ + ++FS++ + V W + I + + G + N F+EM E +K ++ T SSV
Sbjct: 497 CGRLDLSHYIFSKISAKDEVTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSV 556
Query: 225 LKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
L AC + G+++H ++K + +D + + L+DMYGKC L A RVFE + +K
Sbjct: 557 LSACASLPAI-YYGKEIHGVVIKGPIRADLFAESALIDMYGKCGNLEWAHRVFESMPEKN 615
Query: 285 NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+ SWN+++ Y GL E+ L M+ G + L AC+
Sbjct: 616 EV-SWNSIIASYGAYGLVKESVSLLRHMQEEGFKADHVTFLALVSACA 662
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 77/305 (25%), Positives = 138/305 (45%), Gaps = 9/305 (2%)
Query: 33 LNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVAD 92
L+ + + ++ + N L+ M+ C LD +LF MP D +W MI G V
Sbjct: 269 LHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGF 328
Query: 93 YQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN-MELGKQVHGLLFKLGSSRN 151
+ + LF +M K + P + + L + +N GK++HG + + +
Sbjct: 329 VDQALLLFCDMQKSG------IRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMD 382
Query: 152 ISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGR 211
+ L +L++ Y K R + A V+ K + V+ + I G + F+ +
Sbjct: 383 VFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLE 442
Query: 212 ERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLR 271
+ I+ N+ +SVL AC + G+++H+ +K E YV+ L+DMY KC L
Sbjct: 443 QGIRPNAVAIASVLPACASMAA-MKLGQELHSYALKNAYEGRCYVESALMDMYAKCGRLD 501
Query: 272 DAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
+ +F I K + +WN+M+ + +NG EA M G++ I+ + AC
Sbjct: 502 LSHYIFSKISAKDEV-TWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSAC 560
Query: 332 SSISA 336
+S+ A
Sbjct: 561 ASLPA 565
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 72/274 (26%), Positives = 117/274 (42%), Gaps = 12/274 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFN---SWAVMIVGYVDVADYQECITLFAEMMKR 106
RL+ M+V + A +F +P W +I G DY+ + + +M
Sbjct: 79 TRLVGMYVLARRFRDAVAVFSSLPRGAAACALPWNWLIRGLTMAGDYRSALLFYLKMWAH 138
Query: 107 KKGHML--LVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
+ FP V+K+C + LG+ VH LG ++ + +LI Y
Sbjct: 139 PSAPLPDSHTFPY-----VVKSCAALGAIALGRLVHRTARTLGLDGDMFVGSALIKMYAN 193
Query: 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
L DA VF + + V+W + + G F +M + N T +
Sbjct: 194 GGLLWDARQVFDGMAERDCVLWNVMMDGYVKAGSVSSAVELFGDMRASGCEPNFATLACF 253
Query: 225 LKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
L + + D G Q+H VK GLES+ V LV MY KC+ L D ++F L+ +
Sbjct: 254 L-SVSATESDLFFGVQLHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLM-PRD 311
Query: 285 NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
++ +WN M+ G ++NG +A M+ SGI+
Sbjct: 312 DLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIR 345
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 94/205 (45%), Gaps = 8/205 (3%)
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLG-SSRNISLTGSLINFYGKFRCLEDADFVFSQL 178
++ VL+ CV ++ LG QVHG G + + +L L+ Y R DA VFS L
Sbjct: 42 LLAVLRGCVSPSHLSLGLQVHGRAVTAGLHATDTALQTRLVGMYVLARRFRDAVAVFSSL 101
Query: 179 KRHN---TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIK--KNSYTFSSVLKACGGVDD 233
R + W I G + + +M +S+TF V+K+C +
Sbjct: 102 PRGAAACALPWNWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAALGA 161
Query: 234 DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
GR +H +GL+ D +V L+ MY LL DA +VF+ + ++ + WN M+
Sbjct: 162 IA-LGRLVHRTARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDCVL-WNVMM 219
Query: 294 VGYIRNGLYVEATKFLYLMKASGIQ 318
GY++ G A + M+ASG +
Sbjct: 220 DGYVKAGSVSSAVELFGDMRASGCE 244
>gi|222625907|gb|EEE60039.1| hypothetical protein OsJ_12814 [Oryza sativa Japonica Group]
Length = 852
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 88/311 (28%), Positives = 150/311 (48%), Gaps = 11/311 (3%)
Query: 32 LLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVA 91
L++ + + + + + L+ M+ + G L ARQ+FD M RD W VM+ GYV
Sbjct: 167 LVHRTARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDGYVKAG 226
Query: 92 DYQECITLFAEMMKRKKGHMLLVFPAW-IIVCVLKACVCTMNMELGKQVHGLLFKLGSSR 150
+ LF +M R G P + + C L ++ G Q+H L K G
Sbjct: 227 SVSSAVELFGDM--RASG----CEPNFATLACFLSVSATESDLFFGVQLHTLAVKYGLES 280
Query: 151 NISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMG 210
+++ +L++ Y K +CL+D +F + R + V W I + G Q F +M
Sbjct: 281 EVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQ 340
Query: 211 RERIKKNSYTFSSVLKACGGVDDDG-NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRL 269
+ I+ +S T S+L A D +G N G+++H IV+ + D ++ LVD+Y KCR
Sbjct: 341 KSGIRPDSVTLVSLLPAL--TDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKCRA 398
Query: 270 LRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRI 329
+R A+ V++ ++ + M+ GY+ NG+ EA K + GI+ I +
Sbjct: 399 VRMAQSVYD-SSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLP 457
Query: 330 ACSSISASKIN 340
AC+S++A K+
Sbjct: 458 ACASMAAMKLG 468
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 79/288 (27%), Positives = 141/288 (48%), Gaps = 9/288 (3%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
+ ++ L+ ++ C + A+ ++D D + MI GYV QE + +F +++
Sbjct: 383 VFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLE 442
Query: 106 RKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
+ + P A I VL AC M+LG+++H K + +L++ Y K
Sbjct: 443 QG------IRPNAVAIASVLPACASMAAMKLGQELHSYALKNAYEGRCYVESALMDMYAK 496
Query: 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
L+ + ++FS++ + V W + I + + G + N F+EM E +K ++ T SSV
Sbjct: 497 CGRLDLSHYIFSKISAKDEVTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSV 556
Query: 225 LKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
L AC + G+++H ++K + +D + + L+DMYGKC L A RVFE + +K
Sbjct: 557 LSACASLPAI-YYGKEIHGVVIKGPIRADLFAESALIDMYGKCGNLEWAHRVFESMPEKN 615
Query: 285 NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+ SWN+++ Y GL E+ L M+ G + L AC+
Sbjct: 616 EV-SWNSIIASYGAYGLVKESVSLLRHMQEEGFKADHVTFLALVSACA 662
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 77/305 (25%), Positives = 138/305 (45%), Gaps = 9/305 (2%)
Query: 33 LNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVAD 92
L+ + + ++ + N L+ M+ C LD +LF MP D +W MI G V
Sbjct: 269 LHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGF 328
Query: 93 YQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN-MELGKQVHGLLFKLGSSRN 151
+ + LF +M K + P + + L + +N GK++HG + + +
Sbjct: 329 VDQALLLFCDMQKSG------IRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMD 382
Query: 152 ISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGR 211
+ L +L++ Y K R + A V+ K + V+ + I G + F+ +
Sbjct: 383 VFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLE 442
Query: 212 ERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLR 271
+ I+ N+ +SVL AC + G+++H+ +K E YV+ L+DMY KC L
Sbjct: 443 QGIRPNAVAIASVLPACASMAA-MKLGQELHSYALKNAYEGRCYVESALMDMYAKCGRLD 501
Query: 272 DAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
+ +F I K + +WN+M+ + +NG EA M G++ I+ + AC
Sbjct: 502 LSHYIFSKISAKDEV-TWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSAC 560
Query: 332 SSISA 336
+S+ A
Sbjct: 561 ASLPA 565
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 72/274 (26%), Positives = 117/274 (42%), Gaps = 12/274 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFN---SWAVMIVGYVDVADYQECITLFAEMMKR 106
RL+ M+V + A +F +P W +I G DY+ + + +M
Sbjct: 79 TRLVGMYVLARRFRDAVAVFSSLPRGAAACALPWNWLIRGLTMAGDYRSALLFYLKMWAH 138
Query: 107 KKGHML--LVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
+ FP V+K+C + LG+ VH LG ++ + +LI Y
Sbjct: 139 PSAPLPDSHTFPY-----VVKSCAALGAIALGRLVHRTARTLGLDGDMFVGSALIKMYAN 193
Query: 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
L DA VF + + V+W + + G F +M + N T +
Sbjct: 194 GGLLWDARQVFDGMAERDCVLWNVMMDGYVKAGSVSSAVELFGDMRASGCEPNFATLACF 253
Query: 225 LKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
L + + D G Q+H VK GLES+ V LV MY KC+ L D ++F L+ +
Sbjct: 254 L-SVSATESDLFFGVQLHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLM-PRD 311
Query: 285 NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
++ +WN M+ G ++NG +A M+ SGI+
Sbjct: 312 DLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIR 345
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 94/205 (45%), Gaps = 8/205 (3%)
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLG-SSRNISLTGSLINFYGKFRCLEDADFVFSQL 178
++ VL+ CV ++ LG QVHG G + + +L L+ Y R DA VFS L
Sbjct: 42 LLAVLRGCVSPSHLSLGLQVHGRAVTAGLHATDTALQTRLVGMYVLARRFRDAVAVFSSL 101
Query: 179 KRHN---TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIK--KNSYTFSSVLKACGGVDD 233
R + W I G + + +M +S+TF V+K+C +
Sbjct: 102 PRGAAACALPWNWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAALGA 161
Query: 234 DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
GR +H +GL+ D +V L+ MY LL DA +VF+ + ++ + WN M+
Sbjct: 162 IA-LGRLVHRTARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDCVL-WNVMM 219
Query: 294 VGYIRNGLYVEATKFLYLMKASGIQ 318
GY++ G A + M+ASG +
Sbjct: 220 DGYVKAGSVSSAVELFGDMRASGCE 244
>gi|357502643|ref|XP_003621610.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496625|gb|AES77828.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 881
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 85/306 (27%), Positives = 144/306 (47%), Gaps = 12/306 (3%)
Query: 29 AFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYV 88
AF + + + +R ++ N ++ + G ++ A+ LFD MP RD SW M+ Y+
Sbjct: 92 AFNVFDKMPQR-----DVISWNTMIFGYAGVGNMEFAQFLFDSMPERDVVSWNSMLSCYL 146
Query: 89 DVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGS 148
+++ I +F +M + H F VLKAC + LG QVH L ++G
Sbjct: 147 QNGFHRKSIEIFTKMRLLEIQHDYATF-----AVVLKACTGIEDYGLGLQVHCLAIQMGF 201
Query: 149 SRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKE 208
++ +L++ Y + L+ A +F ++ N+V W+A I R F + +K
Sbjct: 202 DSDVVTGTALVDMYSTCKKLDHAFNIFCEMPERNSVCWSAVIAGYVRNDRFTEGLKLYKV 261
Query: 209 MGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCR 268
M E + + TF+S ++C G+ G Q+HA +K D V +DMY KC
Sbjct: 262 MLDEGMGVSQATFASAFRSCAGL-SAFELGTQLHAYALKTNFGYDNIVGTATLDMYAKCD 320
Query: 269 LLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLR 328
+ DA +VF + S NA++VGY R +EA + ++ S + E ++
Sbjct: 321 RMVDARKVFNTFPNPTR-QSHNALIVGYARQDQVLEALEIFRSLQKSYLDFDEISLSGAL 379
Query: 329 IACSSI 334
ACS+I
Sbjct: 380 TACSAI 385
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 139/285 (48%), Gaps = 7/285 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N +L M+ CG L A +FD+M ++D SW +I + +E + LF M++
Sbjct: 411 NTILDMYAKCGALMEACLIFDDMEIKDAVSWNAIIAAHEQNEHVEETLALFVSMLRSTME 470
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
F + V+KAC + G +VHG + K G + + ++I+ Y K L
Sbjct: 471 PDDYTFGS-----VVKACAGKKALNYGMEVHGRVIKSGMGLDWFVGSAIIDMYCKCGMLV 525
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
+A+ + +L+ TV W + I E + F M + + +++T+++VL C
Sbjct: 526 EAEKIHERLEERTTVSWNSIISGFSSEKQGENALSYFSRMLQVGVIPDNFTYATVLDICA 585
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ G+Q+H I+K+ L SD Y+ +VDMY KC ++D+ +FE K++ +W
Sbjct: 586 NL-ATVELGKQIHGQILKLQLHSDVYIASTIVDMYSKCGNMQDSRIMFEK-APKRDYVTW 643
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
+AM+ Y +GL +A K M+ ++ ++ + AC+ +
Sbjct: 644 SAMICAYAYHGLGEDAIKLFEEMQLQNVKPNHTIFISVLRACAHM 688
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 71/244 (29%), Positives = 120/244 (49%), Gaps = 7/244 (2%)
Query: 53 LLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHML 112
L M+ C ++ AR++F+ P S +IVGY E + +F + K
Sbjct: 313 LDMYAKCDRMVDARKVFNTFPNPTRQSHNALIVGYARQDQVLEALEIFRSLQKS-----Y 367
Query: 113 LVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDAD 172
L F + L AC G Q+HGL K G NI + ++++ Y K L +A
Sbjct: 368 LDFDEISLSGALTACSAIKGYLEGIQLHGLAVKCGLDFNICVANTILDMYAKCGALMEAC 427
Query: 173 FVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVD 232
+F ++ + V W A I + + H + F M R ++ + YTF SV+KAC G
Sbjct: 428 LIFDDMEIKDAVSWNAIIAAHEQNEHVEETLALFVSMLRSTMEPDDYTFGSVVKACAG-K 486
Query: 233 DDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAM 292
N G ++H ++K G+ D +V ++DMY KC +L +AE++ E + +++ SWN++
Sbjct: 487 KALNYGMEVHGRVIKSGMGLDWFVGSAIIDMYCKCGMLVEAEKIHERL-EERTTVSWNSI 545
Query: 293 LVGY 296
+ G+
Sbjct: 546 ISGF 549
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 74/286 (25%), Positives = 129/286 (45%), Gaps = 9/286 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ +C +LD A +F EMP R+ W+ +I GYV + E + L+ M+ G
Sbjct: 211 LVDMYSTCKKLDHAFNIFCEMPERNSVCWSAVIAGYVRNDRFTEGLKLYKVMLDEGMGVS 270
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
F + ++C ELG Q+H K + + + ++ Y K + DA
Sbjct: 271 QATFAS-----AFRSCAGLSAFELGTQLHAYALKTNFGYDNIVGTATLDMYAKCDRMVDA 325
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
VF+ A IV R+ + F+ + + + + + S L AC +
Sbjct: 326 RKVFNTFPNPTRQSHNALIVGYARQDQVLEALEIFRSLQKSYLDFDEISLSGALTACSAI 385
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
G Q+H VK GL+ + V ++DMY KC L +A +F+ ++ K+ SWNA
Sbjct: 386 KGYLE-GIQLHGLAVKCGLDFNICVANTILDMYAKCGALMEACLIFD-DMEIKDAVSWNA 443
Query: 292 MLVGYIRNGLYVEATKFLYL-MKASGIQIQESLINDLRIACSSISA 336
++ + +N +VE T L++ M S ++ + + AC+ A
Sbjct: 444 IIAAHEQNE-HVEETLALFVSMLRSTMEPDDYTFGSVVKACAGKKA 488
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 95/194 (48%), Gaps = 2/194 (1%)
Query: 143 LFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQV 202
+F R++ ++I Y +E A F+F + + V W + + + G +
Sbjct: 95 VFDKMPQRDVISWNTMIFGYAGVGNMEFAQFLFDSMPERDVVSWNSMLSCYLQNGFHRKS 154
Query: 203 FNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVD 262
F +M I+ + TF+ VLKAC G++D G G Q+H +++G +SD LVD
Sbjct: 155 IEIFTKMRLLEIQHDYATFAVVLKACTGIEDYG-LGLQVHCLAIQMGFDSDVVTGTALVD 213
Query: 263 MYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQES 322
MY C+ L A +F + ++N W+A++ GY+RN + E K +M G+ + ++
Sbjct: 214 MYSTCKKLDHAFNIF-CEMPERNSVCWSAVIAGYVRNDRFTEGLKLYKVMLDEGMGVSQA 272
Query: 323 LINDLRIACSSISA 336
+C+ +SA
Sbjct: 273 TFASAFRSCAGLSA 286
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 115/244 (47%), Gaps = 15/244 (6%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+ CG L A ++ + + R SW +I G+ + ++ F+ M++ + V
Sbjct: 517 MYCKCGMLVEAEKIHERLEERTTVSWNSIISGFSSEKQGENALSYFSRMLQ------VGV 570
Query: 115 FPA-WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADF 173
P + VL C +ELGKQ+HG + KL ++ + ++++ Y K ++D+
Sbjct: 571 IPDNFTYATVLDICANLATVELGKQIHGQILKLQLHSDVYIASTIVDMYSKCGNMQDSRI 630
Query: 174 VFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC---GG 230
+F + + + V W+A I G F+EM + +K N F SVL+AC G
Sbjct: 631 MFEKAPKRDYVTWSAMICAYAYHGLGEDAIKLFEEMQLQNVKPNHTIFISVLRACAHMGF 690
Query: 231 VDDDGNCGRQMHANIVKIGLESD-EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
VD + R+M ++ GL+ E+ C +VD+ G+ + +A + E + + + W
Sbjct: 691 VDKGLHYFREMRSH---YGLDPQMEHYSC-MVDLLGRSGQVNEALELIESMPFEADDVIW 746
Query: 290 NAML 293
+L
Sbjct: 747 RTLL 750
>gi|347954480|gb|AEP33740.1| chlororespiratory reduction 21, partial [Matthiola maderensis]
Length = 807
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 89/344 (25%), Positives = 167/344 (48%), Gaps = 16/344 (4%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFL-NRLLLMHVSC 59
MD + I ++Y +++ C +++D ++ I K+ + ++ +L++ + C
Sbjct: 37 MDYRNIRIGPEIYGEILQGCVYERDLCTGQQIHAQILKKGDFYARNEYIETKLVIFYAKC 96
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AW 118
L+ A+ LF ++ +R+ SWA +I + + + F EM++ +FP +
Sbjct: 97 DALEIAQVLFSKLRVRNVFSWAAIIGVKCRIGLGEGALMGFVEMLENG------IFPDNF 150
Query: 119 IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL 178
++ V KAC G+ VHG + K G + + SL + YGK L+DA VF +
Sbjct: 151 VVPNVCKACGALQWSRFGRGVHGYVAKAGLHHCVFVASSLADMYGKCGVLDDARKVFDYI 210
Query: 179 KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC---GGVDDDG 235
N V W A +V + G + + EM +E I+ T S+ L A GG+++
Sbjct: 211 PDRNAVAWNALMVGYVQNGMYEEAIRLLSEMRKEGIEPTRVTVSTCLSASANMGGIEE-- 268
Query: 236 NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
G+Q HA + GLE D + +++ Y K L+ AE +F+ +++ K++ +WN ++ G
Sbjct: 269 --GKQSHAIAIVNGLELDNILGTSILNFYCKVGLIEYAEMIFDGMIE-KDVVTWNLLISG 325
Query: 296 YIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKI 339
Y++ GL EA LM+ ++ ++ L A +S K+
Sbjct: 326 YVQQGLVEEAIYMCQLMRRENLKFDCVTLSTLMSAATSTQNLKL 369
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 82/264 (31%), Positives = 134/264 (50%), Gaps = 9/264 (3%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+ CG LD AR++FD +P R+ +W ++VGYV Y+E I L +EM RK+G +
Sbjct: 193 MYGKCGVLDDARKVFDYIPDRNAVAWNALMVGYVQNGMYEEAIRLLSEM--RKEG----I 246
Query: 115 FPAWIIVCV-LKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADF 173
P + V L A +E GKQ H + G + L S++NFY K +E A+
Sbjct: 247 EPTRVTVSTCLSASANMGGIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIEYAEM 306
Query: 174 VFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDD 233
+F + + V W I ++G + + M RE +K + T S+++ A +
Sbjct: 307 IFDGMIEKDVVTWNLLISGYVQQGLVEEAIYMCQLMRRENLKFDCVTLSTLMSAATSTQN 366
Query: 234 DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
G+++ ++ GLESD + VDMY KC + +A++VF+ V +K++ WN +L
Sbjct: 367 L-KLGKEIQCYCIRHGLESDIVLASTAVDMYAKCGSIVNAKKVFDSTV-QKDLILWNTLL 424
Query: 294 VGYIRNGLYVEATKFLYLMKASGI 317
Y +GL EA + Y M+ +
Sbjct: 425 SAYADSGLSGEALRLFYEMQLESV 448
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/285 (22%), Positives = 120/285 (42%), Gaps = 38/285 (13%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
+L + G ++ A +FD M +D +W ++I GYV +E I + ++M+R+
Sbjct: 291 ILNFYCKVGLIEYAEMIFDGMIEKDVVTWNLLISGYVQQGLVEEAIYM-CQLMRREN--- 346
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
L F + ++ A T N++LGK++ + G +I L + ++ Y K + +A
Sbjct: 347 -LKFDCVTLSTLMSAATSTQNLKLGKEIQCYCIRHGLESDIVLASTAVDMYAKCGSIVNA 405
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
VF + + ++W + G + F EM E + N T+
Sbjct: 406 KKVFDSTVQKDLILWNTLLSAYADSGLSGEALRLFYEMQLESVPPNVITW---------- 455
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
N++ + L ++ G V+ + L + +F N+ SW
Sbjct: 456 ------------NLIILSL-----LRNGQVNEAKEMFLQMQSSGIF------PNLISWTT 492
Query: 292 MLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
M+ G ++NG EA FL M+ SG++ I AC ++++
Sbjct: 493 MMNGLVQNGCSEEAILFLRKMQESGLRPNAFTITVALSACVNLAS 537
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 92/210 (43%), Gaps = 17/210 (8%)
Query: 41 NIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMP----LRDFNSWAVMIVGYVDVADYQEC 96
++ P ++ N ++L + GQ++ A+++F +M + SW M+ G V +E
Sbjct: 447 SVPPNVITWNLIILSLLRNGQVNEAKEMFLQMQSSGIFPNLISWTTMMNGLVQNGCSEEA 506
Query: 97 ITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGS-SRNISLT 155
I +M + L A+ I L ACV ++ G+ +HG + + S + S+
Sbjct: 507 ILFLRKMQESG-----LRPNAFTITVALSACVNLASLHFGRSIHGYIIRNQQYSFSASIE 561
Query: 156 GSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIK 215
SL++ Y K + A+ VF ++ A I G + ++ + +K
Sbjct: 562 TSLVDMYAKCGDINKAERVFGSKLCSELPLYNAMISAYALYGKVREAITLYRSLEDGGVK 621
Query: 216 KNSYTFSSVLKACGGVDDDGNCGRQMHANI 245
++ T +S+L AC N GR ++ I
Sbjct: 622 PDNITITSLLSAC-------NYGRDVNQAI 644
>gi|302822474|ref|XP_002992895.1| hypothetical protein SELMODRAFT_3444 [Selaginella moellendorffii]
gi|300139343|gb|EFJ06086.1| hypothetical protein SELMODRAFT_3444 [Selaginella moellendorffii]
Length = 294
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 86/290 (29%), Positives = 145/290 (50%), Gaps = 12/290 (4%)
Query: 47 LFLNRLLL-MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
LFL LL+ M+ CG L+ AR++F +P+++ S +++I Y+ A + I LF EM
Sbjct: 13 LFLGNLLVQMYSKCGNLELARRVFHTLPVKNEFSCSILISAYLRAARPADAIALFREMP- 71
Query: 106 RKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
+L + P ++ VL AC ++E G +H + + + +L++FY K
Sbjct: 72 -----LLGIRPDGFVYASVLSACSSVGDLEQGISIHDEVKSSQFLDDPIVQTALVDFYAK 126
Query: 165 FRCLEDADFVFSQLKRHNTVV-WTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSS 223
LE+A VF + R V WTA + G + F M E + +++TFSS
Sbjct: 127 CGRLEEAGMVFETIGRDRDVFSWTALASGYAQHGQPGRAIQIFHRMDLEGVGPDAFTFSS 186
Query: 224 VLKACGGVDDDGNCGRQMHANIVKIGLE-SDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282
+L AC + GR +H+ + +G++ D +QC ++ MYGKC + +A F+ I
Sbjct: 187 ILGACSSTRNH-RLGRLIHSRVEFLGMDRQDAVMQCSIIKMYGKCGSVGNARGFFDRIA- 244
Query: 283 KKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
++ W AM+ Y +NG VEA + + M G++ ES + AC+
Sbjct: 245 SSSVWCWTAMIGAYAQNGHVVEAMEMFHRMVLEGVRPVESTFVLVLSACT 294
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 82/194 (42%), Gaps = 1/194 (0%)
Query: 140 HGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHF 199
H L G R++ L L+ Y K LE A VF L N + I R
Sbjct: 1 HRHLIAAGYGRHLFLGNLLVQMYSKCGNLELARRVFHTLPVKNEFSCSILISAYLRAARP 60
Query: 200 HQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCG 259
F+EM I+ + + ++SVL AC V D G +H + D VQ
Sbjct: 61 ADAIALFREMPLLGIRPDGFVYASVLSACSSVGDLEQ-GISIHDEVKSSQFLDDPIVQTA 119
Query: 260 LVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQI 319
LVD Y KC L +A VFE I +++ SW A+ GY ++G A + + M G+
Sbjct: 120 LVDFYAKCGRLEEAGMVFETIGRDRDVFSWTALASGYAQHGQPGRAIQIFHRMDLEGVGP 179
Query: 320 QESLINDLRIACSS 333
+ + ACSS
Sbjct: 180 DAFTFSSILGACSS 193
>gi|449528002|ref|XP_004170996.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g12770-like, partial [Cucumis sativus]
Length = 658
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 88/285 (30%), Positives = 136/285 (47%), Gaps = 9/285 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ GQ+ AR +FD++ R SW +I GYV D E + +F EM +
Sbjct: 124 NSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCN-- 181
Query: 110 HMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
V P WI +V V+ A ++ GK +HGL+ KLG + SL Y K +
Sbjct: 182 ----VKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGLV 237
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
E A F F+++++ N ++W A I G+ + F+EM + I+ +S T S + A
Sbjct: 238 EVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLAS 297
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
V R + I K D +V GL+DMY KC + A VF+ + D K++
Sbjct: 298 AQVGSL-ELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVAD-KDVVL 355
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSS 333
W+ M++GY +G EA MK +G+ + L AC +
Sbjct: 356 WSVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKN 400
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 84/278 (30%), Positives = 129/278 (46%), Gaps = 9/278 (3%)
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AW 118
G ++ A + F E+ D W +I GY I ++ +M + V P +
Sbjct: 33 GDVNYAHKAFREVSEPDILLWNAIIKGYTQKNIVDAPIRMYMDMQISQ------VHPNCF 86
Query: 119 IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL 178
+ VLKAC T +GKQ+HG FK G N+ + SL++ Y KF + A VF +L
Sbjct: 87 TFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKL 146
Query: 179 KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCG 238
V WT+ I + G + N FKEM + +K + SV+ A V+D G G
Sbjct: 147 HDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQ-G 205
Query: 239 RQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIR 298
+ +H + K+GLE + + L MY K R L + R F ++K N+ WNAM+ GY
Sbjct: 206 KSIHGLVTKLGLEFEPDIVISLTTMYAK-RGLVEVARFFFNRMEKPNLILWNAMISGYAN 264
Query: 299 NGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
NG EA K M I++ + +A + + +
Sbjct: 265 NGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVGS 302
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/245 (23%), Positives = 102/245 (41%), Gaps = 12/245 (4%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L M+ G ++ AR F+ M + W MI GY + +E I LF EM+ +
Sbjct: 227 LTTMYAKRGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKN---- 282
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+ + + + A ++EL + + G + K + + LI+ Y K + A
Sbjct: 283 -IRVDSITMRSAVLASAQVGSLELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLA 341
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--- 228
VF ++ + V+W+ I+ GH + + EM + + N TF +L AC
Sbjct: 342 RCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNS 401
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
G V + G ++ + G+E +VD+ G+ L A + K ++
Sbjct: 402 GLVKE----GWELFHLMPDHGIEPHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSV 457
Query: 289 WNAML 293
W A+L
Sbjct: 458 WGALL 462
>gi|356528519|ref|XP_003532850.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g39530-like [Glycine max]
Length = 849
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 92/319 (28%), Positives = 151/319 (47%), Gaps = 13/319 (4%)
Query: 20 CTFQKDSAGAFELLNHIRK------RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMP 73
CT +S G+ + L R+ +VNI N L+ M+ C L AR++FD +
Sbjct: 359 CTSVLNSCGSLQALQKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKCDSLTNARKVFDLVA 418
Query: 74 LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNM 133
+ S+ MI GY E + LF EM LL F V +L +
Sbjct: 419 AINVVSYNAMIEGYSRQDKLVEALDLFREMRLSLSPPTLLTF-----VSLLGLSSSLFLL 473
Query: 134 ELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNN 193
EL Q+H L+ K G S + +LI+ Y K C+ DA VF ++ + VVW A
Sbjct: 474 ELSSQIHCLIIKFGVSLDSFAGSALIDVYSKCSCVGDARLVFEEIYDRDIVVWNAMFSGY 533
Query: 194 CREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESD 253
++ + +K++ R+K N +TF++V+ A + + G+Q H ++K+GL+ D
Sbjct: 534 SQQLENEESLKLYKDLQMSRLKPNEFTFAAVIAAASNIASLRH-GQQFHNQVIKMGLDDD 592
Query: 254 EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMK 313
+V LVDMY KC + ++ + F ++++IA WN+M+ Y ++G +A + M
Sbjct: 593 PFVTNSLVDMYAKCGSIEESHKAFS-STNQRDIACWNSMISTYAQHGDAAKALEVFERMI 651
Query: 314 ASGIQIQESLINDLRIACS 332
G++ L ACS
Sbjct: 652 MEGVKPNYVTFVGLLSACS 670
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/294 (27%), Positives = 141/294 (47%), Gaps = 12/294 (4%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
+ +N LL + A++LFD MP R+ +W+ M+ Y E + LF M+
Sbjct: 87 VFLVNTLLHAYSKMNLQSDAQKLFDTMPHRNLVTWSSMVSMYTQHGYSVEALLLFCRFMR 146
Query: 106 R--KKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYG 163
+K + +I+ V++AC N+ Q+HG + K G +++ + SLI+FY
Sbjct: 147 SCSEKPN------EYILASVVRACTQLGNLSQALQLHGFVVKGGFVQDVYVGTSLIDFYA 200
Query: 164 KFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSS 223
K +++A +F LK TV WTA I + G F +M + + Y SS
Sbjct: 201 KRGYVDEARLIFDGLKVKTTVTWTAIIAGYAKLGRSEVSLKLFNQMREGDVYPDRYVISS 260
Query: 224 VLKACGGVDD-DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282
VL AC ++ +G G+Q+H +++ G + D V G++D Y KC ++ ++F +VD
Sbjct: 261 VLSACSMLEFLEG--GKQIHGYVLRRGFDMDVSVVNGIIDFYLKCHKVKTGRKLFNRLVD 318
Query: 283 KKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
K++ SW M+ G ++N + +A M G + + +C S+ A
Sbjct: 319 -KDVVSWTTMIAGCMQNSFHGDAMDLFVEMVRKGWKPDAFGCTSVLNSCGSLQA 371
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 77/288 (26%), Positives = 133/288 (46%), Gaps = 7/288 (2%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
+N ++ ++ C ++ T R+LF+ + +D SW MI G + + + + + LF EM+++
Sbjct: 293 VNGIIDFYLKCHKVKTGRKLFNRLVDKDVVSWTTMIAGCMQNSFHGDAMDLFVEMVRKGW 352
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
A+ VL +C ++ G+QVH K+ + + LI+ Y K L
Sbjct: 353 KP-----DAFGCTSVLNSCGSLQALQKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKCDSL 407
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+A VF + N V + A I R+ + + F+EM TF S+L
Sbjct: 408 TNARKVFDLVAAINVVSYNAMIEGYSRQDKLVEALDLFREMRLSLSPPTLLTFVSLLGLS 467
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
+ Q+H I+K G+ D + L+D+Y KC + DA VFE I D+ +I
Sbjct: 468 SSLFLLELS-SQIHCLIIKFGVSLDSFAGSALIDVYSKCSCVGDARLVFEEIYDR-DIVV 525
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
WNAM GY + E+ K ++ S ++ E + A S+I++
Sbjct: 526 WNAMFSGYSQQLENEESLKLYKDLQMSRLKPNEFTFAAVIAAASNIAS 573
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 92/200 (46%), Gaps = 8/200 (4%)
Query: 137 KQVHGLLFKLG-SSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCR 195
K++H + LG ++ L +L++ Y K DA +F + N V W++ + +
Sbjct: 71 KKIHAHIVVLGFHQHDVFLVNTLLHAYSKMNLQSDAQKLFDTMPHRNLVTWSSMVSMYTQ 130
Query: 196 EGHFHQVFNDFKEMGRE-RIKKNSYTFSSVLKACGGVDDDGNCGR--QMHANIVKIGLES 252
G+ + F R K N Y +SV++AC + GN + Q+H +VK G
Sbjct: 131 HGYSVEALLLFCRFMRSCSEKPNEYILASVVRACTQL---GNLSQALQLHGFVVKGGFVQ 187
Query: 253 DEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLM 312
D YV L+D Y K + +A +F+ + K + +W A++ GY + G + K M
Sbjct: 188 DVYVGTSLIDFYAKRGYVDEARLIFDGLKVKTTV-TWTAIIAGYAKLGRSEVSLKLFNQM 246
Query: 313 KASGIQIQESLINDLRIACS 332
+ + +I+ + ACS
Sbjct: 247 REGDVYPDRYVISSVLSACS 266
>gi|356529693|ref|XP_003533423.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65570-like [Glycine max]
Length = 676
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 84/288 (29%), Positives = 142/288 (49%), Gaps = 10/288 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
++L+ ++ CG L AR+LFDE+P R +W MI ++ +E + + M+
Sbjct: 39 HKLIDGYIKCGSLAEARKLFDELPSRHIVTWNSMISSHISHGKSKEAVEFYGNML----- 93
Query: 110 HMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLG-SSRNISLTGSLINFYGKFRC 167
M V P A+ + KA + G++ HGL LG + + +L++ Y KF
Sbjct: 94 -MEGVLPDAYTFSAISKAFSQLGLIRHGQRAHGLAVVLGLEVLDGFVASALVDMYAKFDK 152
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
+ DA VF ++ + V++TA IV + G + F++M +K N YT + +L
Sbjct: 153 MRDAHLVFRRVLEKDVVLFTALIVGYAQHGLDGEALKIFEDMVNRGVKPNEYTLACILIN 212
Query: 228 CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
CG + D N G+ +H +VK GLES Q L+ MY +C ++ D+ +VF + D N
Sbjct: 213 CGNLGDLVN-GQLIHGLVVKSGLESVVASQTSLLTMYSRCNMIEDSIKVFNQL-DYANQV 270
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
+W + +VG ++NG A M I ++ + ACSS++
Sbjct: 271 TWTSFVVGLVQNGREEVAVSIFREMIRCSISPNPFTLSSILQACSSLA 318
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/283 (27%), Positives = 142/283 (50%), Gaps = 9/283 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ ++ A +F + +D + +IVGY E + +F +M+ R
Sbjct: 143 LVDMYAKFDKMRDAHLVFRRVLEKDVVLFTALIVGYAQHGLDGEALKIFEDMVNRG---- 198
Query: 112 LLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
V P + + C+L C ++ G+ +HGL+ K G ++ SL+ Y + +ED
Sbjct: 199 --VKPNEYTLACILINCGNLGDLVNGQLIHGLVVKSGLESVVASQTSLLTMYSRCNMIED 256
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
+ VF+QL N V WT+ +V + G + F+EM R I N +T SS+L+AC
Sbjct: 257 SIKVFNQLDYANQVTWTSFVVGLVQNGREEVAVSIFREMIRCSISPNPFTLSSILQACSS 316
Query: 231 VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWN 290
+ G Q+HA +K+GL+ ++Y L+++YGKC + A VF+++ + ++ + N
Sbjct: 317 LAML-EVGEQIHAITMKLGLDGNKYAGAALINLYGKCGNMDKARSVFDVLTE-LDVVAIN 374
Query: 291 AMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSS 333
+M+ Y +NG EA + +K G+ + +AC++
Sbjct: 375 SMIYAYAQNGFGHEALELFERLKNMGLVPNGVTFISILLACNN 417
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 119/248 (47%), Gaps = 18/248 (7%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL M+ C ++ + ++F+++ + +W +VG V + +++F EM++
Sbjct: 244 LLTMYSRCNMIEDSIKVFNQLDYANQVTWTSFVVGLVQNGREEVAVSIFREMIRCS---- 299
Query: 112 LLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
+ P + + +L+AC +E+G+Q+H + KLG N +LIN YGK ++
Sbjct: 300 --ISPNPFTLSSILQACSSLAMLEVGEQIHAITMKLGLDGNKYAGAALINLYGKCGNMDK 357
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC-- 228
A VF L + V + I + G H+ F+ + + N TF S+L AC
Sbjct: 358 ARSVFDVLTELDVVAINSMIYAYAQNGFGHEALELFERLKNMGLVPNGVTFISILLACNN 417
Query: 229 GGVDDDGNCGRQMHANIV---KIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
G+ ++G C Q+ A+I I L D + C ++D+ G+ R L +A + E V +
Sbjct: 418 AGLVEEG-C--QIFASIRNNHNIELTIDHFT-C-MIDLLGRSRRLEEAAMLIEE-VRNPD 471
Query: 286 IASWNAML 293
+ W +L
Sbjct: 472 VVLWRTLL 479
>gi|302817750|ref|XP_002990550.1| hypothetical protein SELMODRAFT_327 [Selaginella moellendorffii]
gi|300141718|gb|EFJ08427.1| hypothetical protein SELMODRAFT_327 [Selaginella moellendorffii]
Length = 917
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 88/311 (28%), Positives = 150/311 (48%), Gaps = 15/311 (4%)
Query: 8 ITTDMYTCL-IKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTAR 66
IT D +T + I + T + A ++L+ + ++ + ++ L+ MH G + AR
Sbjct: 403 ITPDKFTFISIIDGTARMQEA---KILSELMVESGVELDVFLVSALINMHSRYGNVREAR 459
Query: 67 QLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKA 126
LFD+M RD W +I YV + L + R +G L+ + +V L A
Sbjct: 460 SLFDDMKDRDIVMWTSIISSYVQHGSSDD--ALGCTRLMRLEG---LMGNDFTLVTALNA 514
Query: 127 CVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVW 186
C + GK +H + G + + ++ +LIN Y K CLE+AD VF Q + N V W
Sbjct: 515 CASLTALSEGKLIHSHAIERGFAASPAVGNALINMYAKCGCLEEADLVFHQCGK-NLVSW 573
Query: 187 TAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIV 246
+ + + F+EM E +K + +F +VL C + G ++H ++
Sbjct: 574 NTIAAAYVQRDKWREALQLFQEMQLEGLKADKVSFVTVLNGCSSASE----GSKIHNILL 629
Query: 247 KIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEAT 306
+ G+ESD V L++MY + L +A R+F + + ++I SWNAM+ G +GL EA
Sbjct: 630 ETGMESDHIVSTALLNMYTASKSLDEASRIFSRM-EFRDIVSWNAMIAGKAEHGLSREAI 688
Query: 307 KFLYLMKASGI 317
+ M+ G+
Sbjct: 689 QMFQRMQLEGV 699
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 80/270 (29%), Positives = 130/270 (48%), Gaps = 7/270 (2%)
Query: 47 LFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR 106
L N + M+ CG ++ A +F + SW ++ + +Q+ +F M +
Sbjct: 38 LVQNATIHMYGKCGCVEDAVTVFQSLDHPSQVSWNSLLAAFARDGQFQQAFQIFQRMKLQ 97
Query: 107 KKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166
+ F V VL C T ++ GK +HG + + G RN+ + SLI YGK
Sbjct: 98 GLAPDRITF-----VTVLDGCTATGDLSRGKLLHGFVLEAGLERNVMVGTSLIKMYGKCG 152
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
C+EDA VF +L + V WT+ I+ + + F M + N T+++ +
Sbjct: 153 CVEDARRVFDKLALQDVVSWTSMIMTYVQHDRCVEALELFHRMRPSGVLPNRITYATAIS 212
Query: 227 ACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
AC V+ + G+ +H+ +++ G ESD V C +V+MYGKC L DA VFE + N
Sbjct: 213 ACAHVESMAD-GKLIHSQVLEDGFESDVVVSCAIVNMYGKCGSLEDAREVFERM-PHPNT 270
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASG 316
SWNA++ ++G VEA + M+ G
Sbjct: 271 VSWNAIVAACTQHGCCVEALWYFQRMQLQG 300
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 74/296 (25%), Positives = 136/296 (45%), Gaps = 12/296 (4%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L+ N ++ M+ SCG++D A F M RD SW +I G+ E + LF M+
Sbjct: 341 LIVGNCIMTMYSSCGRIDNAAAFFSTMVERDAISWNTIISGHAQAGFCDEAVHLFRRMLA 400
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
+ + + ++ T M+ K + L+ + G ++ L +LIN + ++
Sbjct: 401 EG-----ITPDKFTFISIIDG---TARMQEAKILSELMVESGVELDVFLVSALINMHSRY 452
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
+ +A +F +K + V+WT+ I + + G + M E + N +T + L
Sbjct: 453 GNVREARSLFDDMKDRDIVMWTSIISSYVQHGSSDDALGCTRLMRLEGLMGNDFTLVTAL 512
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
AC + G+ +H++ ++ G + V L++MY KC L +A+ VF KN
Sbjct: 513 NACASLTALSE-GKLIHSHAIERGFAASPAVGNALINMYAKCGCLEEADLVFHQC--GKN 569
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS-ASKIN 340
+ SWN + Y++ + EA + M+ G++ + + CSS S SKI+
Sbjct: 570 LVSWNTIAAAYVQRDKWREALQLFQEMQLEGLKADKVSFVTVLNGCSSASEGSKIH 625
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 84/308 (27%), Positives = 143/308 (46%), Gaps = 13/308 (4%)
Query: 13 YTCLIKECTFQKD-SAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDE 71
+ ++ CT D S G +LL+ ++ ++ L+ M+ CG ++ AR++FD+
Sbjct: 106 FVTVLDGCTATGDLSRG--KLLHGFVLEAGLERNVMVGTSLIKMYGKCGCVEDARRVFDK 163
Query: 72 MPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWII-VCVLKACVCT 130
+ L+D SW MI+ YV E + LF M R G V P I + AC
Sbjct: 164 LALQDVVSWTSMIMTYVQHDRCVEALELFHRM--RPSG----VLPNRITYATAISACAHV 217
Query: 131 MNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKI 190
+M GK +H + + G ++ ++ +++N YGK LEDA VF ++ NTV W A +
Sbjct: 218 ESMADGKLIHSQVLEDGFESDVVVSCAIVNMYGKCGSLEDAREVFERMPHPNTVSWNAIV 277
Query: 191 VNNCREGHFHQVFNDFKEMGRE-RIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIG 249
+ G + F+ M + + TF ++L AC G ++ I++ G
Sbjct: 278 AACTQHGCCVEALWYFQRMQLQGGSTPDKVTFITILNACSS-PATLTFGELLYECILQCG 336
Query: 250 LESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFL 309
++ V ++ MY C + +A F +V++ I SWN ++ G+ + G EA
Sbjct: 337 YDTHLIVGNCIMTMYSSCGRIDNAAAFFSTMVERDAI-SWNTIISGHAQAGFCDEAVHLF 395
Query: 310 YLMKASGI 317
M A GI
Sbjct: 396 RRMLAEGI 403
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 72/284 (25%), Positives = 126/284 (44%), Gaps = 11/284 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ CG L+ A +F + ++ SW + YV ++E + LF EM
Sbjct: 544 NALINMYAKCGCLEEADLVFHQCG-KNLVSWNTIAAAYVQRDKWREALQLFQEMQLEGLK 602
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ F V VL C G ++H +L + G + ++ +L+N Y + L+
Sbjct: 603 ADKVSF-----VTVLNGCSSASE---GSKIHNILLETGMESDHIVSTALLNMYTASKSLD 654
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
+A +FS+++ + V W A I G + F+ M E + + +F +VL A
Sbjct: 655 EASRIFSRMEFRDIVSWNAMIAGKAEHGLSREAIQMFQRMQLEGVAPDKISFVTVLNAFS 714
Query: 230 GVDDDG-NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
G R + I G E+D V +V M+G+ L +A R FE I +++ AS
Sbjct: 715 GSSPSSLKQARLVEKLISDQGYETDTIVGNAIVSMFGRSGRLAEARRAFERI-RERDAAS 773
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
WN ++ + ++G +A K M+ + + + ACS
Sbjct: 774 WNVIVTAHAQHGEVEQALKLFRRMQQESSRPDSITLVSVLSACS 817
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 104/204 (50%), Gaps = 7/204 (3%)
Query: 114 VFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADF 173
F A + +C K+ + G+ VH + R+ + + I+ YGK C+EDA
Sbjct: 4 TFLALLGLCAKKSAIAE-----GRFVHSRVEASEFRRDDLVQNATIHMYGKCGCVEDAVT 58
Query: 174 VFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDD 233
VF L + V W + + R+G F Q F F+ M + + + TF +VL C D
Sbjct: 59 VFQSLDHPSQVSWNSLLAAFARDGQFQQAFQIFQRMKLQGLAPDRITFVTVLDGCTATGD 118
Query: 234 DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
G+ +H +++ GLE + V L+ MYGKC + DA RVF+ + +++ SW +M+
Sbjct: 119 LSR-GKLLHGFVLEAGLERNVMVGTSLIKMYGKCGCVEDARRVFDKLA-LQDVVSWTSMI 176
Query: 294 VGYIRNGLYVEATKFLYLMKASGI 317
+ Y+++ VEA + + M+ SG+
Sbjct: 177 MTYVQHDRCVEALELFHRMRPSGV 200
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 56/282 (19%), Positives = 128/282 (45%), Gaps = 9/282 (3%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+ CG L+ AR++F+ MP + SW ++ E + F M + V
Sbjct: 248 MYGKCGSLEDAREVFERMPHPNTVSWNAIVAACTQHGCCVEALWYFQRMQLQGGSTPDKV 307
Query: 115 FPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFV 174
+ +L AC + G+ ++ + + G ++ + ++ Y +++A
Sbjct: 308 ----TFITILNACSSPATLTFGELLYECILQCGYDTHLIVGNCIMTMYSSCGRIDNAAAF 363
Query: 175 FSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDD 234
FS + + + W I + + G + + F+ M E I + +TF S++ + +
Sbjct: 364 FSTMVERDAISWNTIISGHAQAGFCDEAVHLFRRMLAEGITPDKFTFISIIDGTARMQE- 422
Query: 235 GNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLV 294
+ + +V+ G+E D ++ L++M+ + +R+A +F+ + D ++I W +++
Sbjct: 423 ---AKILSELMVESGVELDVFLVSALINMHSRYGNVREARSLFDDMKD-RDIVMWTSIIS 478
Query: 295 GYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
Y+++G +A LM+ G+ + + AC+S++A
Sbjct: 479 SYVQHGSSDDALGCTRLMRLEGLMGNDFTLVTALNACASLTA 520
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 108/252 (42%), Gaps = 23/252 (9%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL M+ + LD A ++F M RD SW MI G + +E I +F M +
Sbjct: 643 LLNMYTASKSLDEASRIFSRMEFRDIVSWNAMIAGKAEHGLSREAIQMFQRM------QL 696
Query: 112 LLVFPAWI-IVCVLKA--CVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
V P I V VL A +++ + V L+ G + + ++++ +G+ L
Sbjct: 697 EGVAPDKISFVTVLNAFSGSSPSSLKQARLVEKLISDQGYETDTIVGNAIVSMFGRSGRL 756
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+A F +++ + W + + + G Q F+ M +E + +S T SVL AC
Sbjct: 757 AEARRAFERIRERDAASWNVIVTAHAQHGEVEQALKLFRRMQQESSRPDSITLVSVLSAC 816
Query: 229 --GGVDDDGNCGRQMHANIVKIGLE-----SDEYVQCGLVDMYGKCRLLRDAERVFELIV 281
GG+ ++G + + +G E S E+ C +VD+ + L AE + +
Sbjct: 817 SHGGLIEEG------YYHFTSMGREFGIAGSQEHYGC-VVDLLARAGRLDQAEELLRKMP 869
Query: 282 DKKNIASWNAML 293
+ W +L
Sbjct: 870 VPASYVLWMTLL 881
>gi|357127388|ref|XP_003565363.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g01510-like [Brachypodium distachyon]
Length = 814
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 88/286 (30%), Positives = 143/286 (50%), Gaps = 8/286 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N LL + G L AR++F EMP RD ++ M++G + E + LFA M R+KG
Sbjct: 179 NTLLDAYCKHGLLAAARRVFQEMPHRDSVTYNAMMMGCSKEGSHAEALDLFAAM--RRKG 236
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
L + VL ++ LG+QVHGL+ + SS N+ + SL++FY K CL+
Sbjct: 237 ---LAATRFTFSTVLTVATGVGDLCLGRQVHGLVARATSS-NVFVNNSLLDFYSKCDCLD 292
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
+ +F ++ + V + I V F+EM + + ++S+L G
Sbjct: 293 EMKKLFHEMIERDNVSYNVMIAGYAWNRCASIVLRLFREMQSLSFDRQALPYASLLSVAG 352
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
V G G+Q+HA +V +GL S++ V L+DMY KC +L A+ F DK + SW
Sbjct: 353 SVPHIG-IGKQIHAQLVLLGLSSEDLVGNALIDMYSKCGMLDAAKTNFINKNDKTGV-SW 410
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
AM+ G ++NG EA + M+ +G+ + + A S+++
Sbjct: 411 TAMITGCVQNGQQEEALQLFCGMRRAGLSPDRATFSSTIKASSNLA 456
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 85/287 (29%), Positives = 126/287 (43%), Gaps = 15/287 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT----LFAEMMK 105
N LL + C LD ++LF EM RD S+ VMI GY + C + LF EM
Sbjct: 279 NSLLDFYSKCDCLDEMKKLFHEMIERDNVSYNVMIAGYA----WNRCASIVLRLFREMQS 334
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
L + + +L ++ +GKQ+H L LG S + +LI+ Y K
Sbjct: 335 LSFDRQALPYAS-----LLSVAGSVPHIGIGKQIHAQLVLLGLSSEDLVGNALIDMYSKC 389
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
L+ A F V WTA I + G + F M R + + TFSS +
Sbjct: 390 GMLDAAKTNFINKNDKTGVSWTAMITGCVQNGQQEEALQLFCGMRRAGLSPDRATFSSTI 449
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
KA + G GRQ+H+ +++ G S + L+DMY KC L +A + F+ + ++ +
Sbjct: 450 KASSNLAMIG-LGRQLHSYLIRSGHMSSVFSGSALLDMYTKCGCLDEALQTFDEMPERNS 508
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
I SWNA++ Y G A K M G + + ACS
Sbjct: 509 I-SWNAVISAYAHYGQAKNAIKMFEGMLCYGFKPDSVTFLSVLSACS 554
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 76/261 (29%), Positives = 125/261 (47%), Gaps = 20/261 (7%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMP--LRDFNSWAVMIVGYVDV--ADYQECITLFAEMM 104
LNR+L + GQL A LF P LRD +W VMI + A + ++LF +M+
Sbjct: 69 LNRMLSGYSRSGQLSAAHHLFLSSPPHLRDAVTWTVMIGAFASAPGARASDAVSLFRDML 128
Query: 105 KRKKGHMLLVFPAWIIVCVL----KACVCTMNMELGKQVHGLLFKLGS-SRNISLTGSLI 159
+ V P + V + A T + +H KLG N+ + +L+
Sbjct: 129 REG------VAPDRVTVATVLNLPPASGGTAAAIIIASLHPFALKLGLLHSNVVVCNTLL 182
Query: 160 NFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSY 219
+ Y K L A VF ++ ++V + A ++ +EG + + F M R+ + +
Sbjct: 183 DAYCKHGLLAAARRVFQEMPHRDSVTYNAMMMGCSKEGSHAEALDLFAAMRRKGLAATRF 242
Query: 220 TFSSVLKACGGVDDDGNC-GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE 278
TFS+VL GV D C GRQ+H +V S+ +V L+D Y KC L + +++F
Sbjct: 243 TFSTVLTVATGVGD--LCLGRQVHG-LVARATSSNVFVNNSLLDFYSKCDCLDEMKKLFH 299
Query: 279 LIVDKKNIASWNAMLVGYIRN 299
++++ N+ S+N M+ GY N
Sbjct: 300 EMIERDNV-SYNVMIAGYAWN 319
>gi|326487434|dbj|BAJ89701.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 633
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 91/326 (27%), Positives = 158/326 (48%), Gaps = 11/326 (3%)
Query: 6 LPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTA 65
LP++ M ++K C +DS G + + + + ++ L+ +V G +D A
Sbjct: 143 LPVSKFMLPSVLKACARLQDS-GTLRAAHAVVVKCALCRHVVVATALVSAYVGFGLMDDA 201
Query: 66 RQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPA-WIIVCVL 124
F EM + SW+V+I GYV + E F+ M R+ G V P ++V +
Sbjct: 202 ANAFAEMDEANMVSWSVIIGGYVRSCRWDEAWDAFSTM--RRAG----VLPVDSVLVMAI 255
Query: 125 KACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTV 184
+ C ++ + GKQ+HGL LG RN ++ +I+ YGK + VF + + V
Sbjct: 256 QVCGASLCLVRGKQLHGLAVALGFERNTTVWNCIIDMYGKCGDMGGCRAVFETMVDRDQV 315
Query: 185 VWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHAN 244
W I + R G + + +M + + +T S + AC + D + G H
Sbjct: 316 SWNTIISSYVRLGLCEEALDMVIQMQQCGFTVDRFTLGSGVAACAHLADI-DSGSAFHGY 374
Query: 245 IVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVE 304
+++ L++D LVDMYGKC L+ A VF+ + D++N +W+A+L GY+ NG
Sbjct: 375 LIRRVLDTDAIRGSALVDMYGKCGLMEHARLVFDRM-DERNYVAWDALLSGYVENGQVDL 433
Query: 305 ATKFLYLMKASGIQI-QESLINDLRI 329
A K M+++ I+ Q + +N L++
Sbjct: 434 ALKVFRQMESANIKPNQHTFVNLLKL 459
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 71/251 (28%), Positives = 125/251 (49%), Gaps = 7/251 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N ++ M+ CG + R +F+ M RD SW +I YV + +E + + +M ++ G
Sbjct: 287 NCIIDMYGKCGDMGGCRAVFETMVDRDQVSWNTIISSYVRLGLCEEALDMVIQM--QQCG 344
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ F + + AC +++ G HG L + + +L++ YGK +E
Sbjct: 345 FTVDRF---TLGSGVAACAHLADIDSGSAFHGYLIRRVLDTDAIRGSALVDMYGKCGLME 401
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A VF ++ N V W A + G F++M IK N +TF ++LK CG
Sbjct: 402 HARLVFDRMDERNYVAWDALLSGYVENGQVDLALKVFRQMESANIKPNQHTFVNLLKLCG 461
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
GRQ+HA+ +K+ + + ++ L+DMY KC + A +F + ++++N+ SW
Sbjct: 462 NRRYT-EYGRQIHAHTIKVIHQMNVVLETELIDMYAKCGCIEVARLLF-VRMNERNLISW 519
Query: 290 NAMLVGYIRNG 300
NA+L GY+ +G
Sbjct: 520 NALLSGYVGDG 530
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 74/259 (28%), Positives = 126/259 (48%), Gaps = 9/259 (3%)
Query: 25 DSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMI 84
DS AF ++ +RV + + + L+ M+ CG ++ AR +FD M R++ +W ++
Sbjct: 366 DSGSAFH--GYLIRRV-LDTDAIRGSALVDMYGKCGLMEHARLVFDRMDERNYVAWDALL 422
Query: 85 VGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLF 144
GYV+ + +F +M F V +LK C E G+Q+H
Sbjct: 423 SGYVENGQVDLALKVFRQMESANIKPNQHTF-----VNLLKLCGNRRYTEYGRQIHAHTI 477
Query: 145 KLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFN 204
K+ N+ L LI+ Y K C+E A +F ++ N + W A + +G N
Sbjct: 478 KVIHQMNVVLETELIDMYAKCGCIEVARLLFVRMNERNLISWNALLSGYVGDGQPGASIN 537
Query: 205 DFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMY 264
+++M I+ + YT + +L C GRQ+HA+++KIG +++ +Q LV MY
Sbjct: 538 IYRQMELACIRPDQYTLAGLLSLC-RYQGLLRYGRQIHAHVIKIGSDTNVVLQTLLVHMY 596
Query: 265 GKCRLLRDAERVFELIVDK 283
+CR RDAE V +I ++
Sbjct: 597 VRCRQWRDAENVCAMIQER 615
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/280 (25%), Positives = 123/280 (43%), Gaps = 14/280 (5%)
Query: 60 GQLDTARQLFDEMPLRDFN-SWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAW 118
G+ AR L P R S + I+ + E + LF M R+ G L +
Sbjct: 94 GEGAGARGLPGRAPPRSGEKSASSAILALAHAGRHAEVLELFCRM--RRDG---LPVSKF 148
Query: 119 IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL 178
++ VLKAC + + H ++ K R++ + +L++ Y F ++DA F+++
Sbjct: 149 MLPSVLKACARLQDSGTLRAAHAVVVKCALCRHVVVATALVSAYVGFGLMDDAANAFAEM 208
Query: 179 KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC- 237
N V W+ I R + + ++ F M R + ++ CG C
Sbjct: 209 DEANMVSWSVIIGGYVRSCRWDEAWDAFSTMRRAGVLPVDSVLVMAIQVCGA----SLCL 264
Query: 238 --GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
G+Q+H V +G E + V ++DMYGKC + VFE +VD+ + SWN ++
Sbjct: 265 VRGKQLHGLAVALGFERNTTVWNCIIDMYGKCGDMGGCRAVFETMVDRDQV-SWNTIISS 323
Query: 296 YIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
Y+R GL EA + M+ G + + AC+ ++
Sbjct: 324 YVRLGLCEEALDMVIQMQQCGFTVDRFTLGSGVAACAHLA 363
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 81/174 (46%), Gaps = 8/174 (4%)
Query: 16 LIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLR 75
L+K C ++ + ++ H K ++ + ++ L+ M+ CG ++ AR LF M R
Sbjct: 456 LLKLCGNRRYTEYGRQIHAHTIKVIH-QMNVVLETELIDMYAKCGCIEVARLLFVRMNER 514
Query: 76 DFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTMNME 134
+ SW ++ GYV I ++ +M + + P + + +L C +
Sbjct: 515 NLISWNALLSGYVGDGQPGASINIYRQM------ELACIRPDQYTLAGLLSLCRYQGLLR 568
Query: 135 LGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTA 188
G+Q+H + K+GS N+ L L++ Y + R DA+ V + ++ N V A
Sbjct: 569 YGRQIHAHVIKIGSDTNVVLQTLLVHMYVRCRQWRDAENVCAMIQERNFYVHDA 622
>gi|449451892|ref|XP_004143694.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g12770-like [Cucumis sativus]
Length = 673
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 88/285 (30%), Positives = 136/285 (47%), Gaps = 9/285 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ GQ+ AR +FD++ R SW +I GYV D E + +F EM +
Sbjct: 139 NSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCN-- 196
Query: 110 HMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
V P WI +V V+ A ++ GK +HGL+ KLG + SL Y K +
Sbjct: 197 ----VKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGLV 252
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
E A F F+++++ N ++W A I G+ + F+EM + I+ +S T S + A
Sbjct: 253 EVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLAS 312
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
V R + I K D +V GL+DMY KC + A VF+ + D K++
Sbjct: 313 AQVGSL-ELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVAD-KDVVL 370
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSS 333
W+ M++GY +G EA MK +G+ + L AC +
Sbjct: 371 WSVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKN 415
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 84/278 (30%), Positives = 129/278 (46%), Gaps = 9/278 (3%)
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AW 118
G ++ A + F E+ D W +I GY I ++ +M + V P +
Sbjct: 48 GDVNYAHKAFREVSEPDILLWNAIIKGYTQKNIVDAPIRMYMDMQISQ------VHPNCF 101
Query: 119 IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL 178
+ VLKAC T +GKQ+HG FK G N+ + SL++ Y KF + A VF +L
Sbjct: 102 TFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKL 161
Query: 179 KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCG 238
V WT+ I + G + N FKEM + +K + SV+ A V+D G G
Sbjct: 162 HDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQ-G 220
Query: 239 RQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIR 298
+ +H + K+GLE + + L MY K R L + R F ++K N+ WNAM+ GY
Sbjct: 221 KSIHGLVTKLGLEFEPDIVISLTTMYAK-RGLVEVARFFFNRMEKPNLILWNAMISGYAN 279
Query: 299 NGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
NG EA K M I++ + +A + + +
Sbjct: 280 NGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVGS 317
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/245 (23%), Positives = 102/245 (41%), Gaps = 12/245 (4%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L M+ G ++ AR F+ M + W MI GY + +E I LF EM+ +
Sbjct: 242 LTTMYAKRGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKN---- 297
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+ + + + A ++EL + + G + K + + LI+ Y K + A
Sbjct: 298 -IRVDSITMRSAVLASAQVGSLELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLA 356
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--- 228
VF ++ + V+W+ I+ GH + + EM + + N TF +L AC
Sbjct: 357 RCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNS 416
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
G V + G ++ + G+E +VD+ G+ L A + K ++
Sbjct: 417 GLVKE----GWELFHLMPDHGIEPHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSV 472
Query: 289 WNAML 293
W A+L
Sbjct: 473 WGALL 477
>gi|356499129|ref|XP_003518395.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Glycine max]
Length = 614
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 85/273 (31%), Positives = 132/273 (48%), Gaps = 18/273 (6%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR--- 106
+ L+ + CG + +AR++FDE+P RD SW MI GY +E + +F EM +R
Sbjct: 161 HSLITAYARCGLVASARKVFDEIPHRDSVSWNSMIAGYAKAGCAREAVEVFREMGRRDGF 220
Query: 107 KKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166
+ M LV +L AC ++ELG+ V G + + G + N + +LI+ Y K
Sbjct: 221 EPDEMSLV-------SLLGACGELGDLELGRWVEGFVVERGMTLNSYIGSALISMYAKCG 273
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
LE A +F + + + W A I + G + F M + + N T ++VL
Sbjct: 274 ELESARRIFDGMAARDVITWNAVISGYAQNGMADEAILLFHGMKEDCVTANKITLTAVLS 333
Query: 227 AC---GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
AC G +D G+Q+ + G + D +V L+DMY K L +A+RVF+ + +
Sbjct: 334 ACATIGALD----LGKQIDEYASQRGFQHDIFVATALIDMYAKSGSLDNAQRVFK-DMPQ 388
Query: 284 KNIASWNAMLVGYIRNGLYVEATKFLYLMKASG 316
KN ASWNAM+ +G EA M G
Sbjct: 389 KNEASWNAMISALAAHGKAKEALSLFQHMSDEG 421
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 115/246 (46%), Gaps = 8/246 (3%)
Query: 92 DYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRN 151
+Y ++LF MM FP + + C A ++ H LLFKL +
Sbjct: 102 NYPLALSLFHRMMSLSLTPDNFTFPFFFLSCANLA-----SLSHACAAHSLLFKLALHSD 156
Query: 152 ISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMG- 210
SLI Y + + A VF ++ ++V W + I + G + F+EMG
Sbjct: 157 PHTAHSLITAYARCGLVASARKVFDEIPHRDSVSWNSMIAGYAKAGCAREAVEVFREMGR 216
Query: 211 RERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLL 270
R+ + + + S+L ACG + D GR + +V+ G+ + Y+ L+ MY KC L
Sbjct: 217 RDGFEPDEMSLVSLLGACGELGDL-ELGRWVEGFVVERGMTLNSYIGSALISMYAKCGEL 275
Query: 271 RDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIA 330
A R+F+ + +++ +WNA++ GY +NG+ EA + MK + + + + A
Sbjct: 276 ESARRIFDGMA-ARDVITWNAVISGYAQNGMADEAILLFHGMKEDCVTANKITLTAVLSA 334
Query: 331 CSSISA 336
C++I A
Sbjct: 335 CATIGA 340
>gi|297736478|emb|CBI25349.3| unnamed protein product [Vitis vinifera]
Length = 1241
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/285 (28%), Positives = 140/285 (49%), Gaps = 7/285 (2%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL M+ G ++ A+++FD++ ++ MI ++ + + L+ +M K G
Sbjct: 690 LLTMYAKSGSVEDAKKVFDQVLDKEVELRNAMISAFIGNGRAYDALGLYNKM---KAGET 746
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+ ++ I +L C + + G+ VH + K N+++ +L+ Y K EDA
Sbjct: 747 PV--DSFTISSLLSGCSVVGSYDFGRTVHAEVIKRSMQSNVAIQSALLTMYYKCGSTEDA 804
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
D VF +K + V W + I C+ F + F+ M +E +K +S +SV+ A G+
Sbjct: 805 DSVFYTMKERDVVAWGSMIAGFCQNRRFKDALDLFRAMEKEGVKADSDVMTSVISAGLGL 864
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
++ G +H +K GLESD +V C LVDMY K AE VF + + KN+ +WN+
Sbjct: 865 ENV-ELGHLIHGFAIKRGLESDVFVACSLVDMYSKFGFAESAEMVFSSMPN-KNLVAWNS 922
Query: 292 MLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
M+ Y NGL + L + G + I + +A SS++A
Sbjct: 923 MISCYSWNGLPEMSINLLPQILQHGFYLDSVSITTVLVAVSSVAA 967
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 86/329 (26%), Positives = 153/329 (46%), Gaps = 14/329 (4%)
Query: 7 PITTDMYTCLIKECTFQKDSAGAFELLNHIRKRV---NIKPTLLFLNRLLLMHVSCGQLD 63
P+ + + L+ C+ G+++ + V +++ + + LL M+ CG +
Sbjct: 747 PVDSFTISSLLSGCSV----VGSYDFGRTVHAEVIKRSMQSNVAIQSALLTMYYKCGSTE 802
Query: 64 TARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCV 123
A +F M RD +W MI G+ +++ + LF M K + + ++ V
Sbjct: 803 DADSVFYTMKERDVVAWGSMIAGFCQNRRFKDALDLFRAMEKEG-----VKADSDVMTSV 857
Query: 124 LKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNT 183
+ A + N+ELG +HG K G ++ + SL++ Y KF E A+ VFS + N
Sbjct: 858 ISAGLGLENVELGHLIHGFAIKRGLESDVFVACSLVDMYSKFGFAESAEMVFSSMPNKNL 917
Query: 184 VVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHA 243
V W + I G N ++ + +S + ++VL A V G+ +HA
Sbjct: 918 VAWNSMISCYSWNGLPEMSINLLPQILQHGFYLDSVSITTVLVAVSSVAALLK-GKTLHA 976
Query: 244 NIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYV 303
+++ + SD V+ L+DMY KC L+ A+ +FE + ++N+ +WN+M+ GY +G
Sbjct: 977 YQIRLQIPSDLQVENALIDMYVKCGCLKYAQLIFENM-PRRNLVTWNSMIAGYGSHGNCE 1035
Query: 304 EATKFLYLMKASGIQIQESLINDLRIACS 332
EA + MK S E L +CS
Sbjct: 1036 EAVRLFKEMKRSETAPDEVTFLALITSCS 1064
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 83/296 (28%), Positives = 132/296 (44%), Gaps = 23/296 (7%)
Query: 52 LLLMHVSCGQLDTARQLFDEMP-----LRDFNSWAVMIVGYVDVADYQECITLFAEMMK- 105
L+ M+V CG L +A Q+FD+M D W +I GY ++E + F M +
Sbjct: 482 LINMYVKCGLLGSALQVFDKMSESRDSAPDITVWNPVIDGYFKYGHFEEGLAQFCRMQEL 541
Query: 106 --RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYG 163
R G+ L + VL C G+Q+HG + + + L +LI Y
Sbjct: 542 GIRPDGYSLSI--------VLGICNRLSWYMAGRQIHGYIIRNMFEGDPYLETALIGMYS 593
Query: 164 KFRCLEDADFVFSQLK-RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFS 222
+A +F +L+ R N V W I G + + + E K S +F+
Sbjct: 594 SCSRPMEAWSLFGKLENRSNIVAWNVMIGGFVENGMWEKSLELYSLAKNENCKLVSASFT 653
Query: 223 SVLKAC--GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELI 280
AC G V D GRQ+H +++K+ + D YV L+ MY K + DA++VF+ +
Sbjct: 654 GAFTACSHGEVLD---FGRQVHCDVIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKVFDQV 710
Query: 281 VDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+DK+ + NAM+ +I NG +A MKA + I+ L CS + +
Sbjct: 711 LDKE-VELRNAMISAFIGNGRAYDALGLYNKMKAGETPVDSFTISSLLSGCSVVGS 765
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 109/254 (42%), Gaps = 11/254 (4%)
Query: 84 IVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLL 143
I V Y + + L + K H L + +LK C N+ G+ +H +
Sbjct: 413 IKALVQQGKYSQALELHS-----KTPHSALTTAKFTFPSLLKTCASLSNLYHGRTIHASI 467
Query: 144 FKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH-----NTVVWTAKIVNNCREGH 198
+G + + SLIN Y K L A VF ++ + VW I + GH
Sbjct: 468 VTMGLQSDPYIATSLINMYVKCGLLGSALQVFDKMSESRDSAPDITVWNPVIDGYFKYGH 527
Query: 199 FHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQC 258
F + F M I+ + Y+ S VL C + GRQ+H I++ E D Y++
Sbjct: 528 FEEGLAQFCRMQELGIRPDGYSLSIVLGICNRLSWY-MAGRQIHGYIIRNMFEGDPYLET 586
Query: 259 GLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
L+ MY C +A +F + ++ NI +WN M+ G++ NG++ ++ + L K +
Sbjct: 587 ALIGMYSSCSRPMEAWSLFGKLENRSNIVAWNVMIGGFVENGMWEKSLELYSLAKNENCK 646
Query: 319 IQESLINDLRIACS 332
+ + ACS
Sbjct: 647 LVSASFTGAFTACS 660
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 97/225 (43%), Gaps = 11/225 (4%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ G ++A +F MP ++ +W MI Y + I L ++++
Sbjct: 892 LVDMYSKFGFAESAEMVFSSMPNKNLVAWNSMISCYSWNGLPEMSINLLPQILQHG---- 947
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+ I VL A + GK +H +L ++ + +LI+ Y K CL+ A
Sbjct: 948 -FYLDSVSITTVLVAVSSVAALLKGKTLHAYQIRLQIPSDLQVENALIDMYVKCGCLKYA 1006
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--- 228
+F + R N V W + I G+ + FKEM R + TF +++ +C
Sbjct: 1007 QLIFENMPRRNLVTWNSMIAGYGSHGNCEEAVRLFKEMKRSETAPDEVTFLALITSCSHS 1066
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDA 273
G V++ N + M ++ G+E +VD+ G+ L DA
Sbjct: 1067 GMVEEGLNLFQLMR---IEYGVEPRMEHYASVVDLLGRAGRLDDA 1108
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 6/140 (4%)
Query: 33 LNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVAD 92
L+ + R+ I L N L+ M+V CG L A+ +F+ MP R+ +W MI GY +
Sbjct: 974 LHAYQIRLQIPSDLQVENALIDMYVKCGCLKYAQLIFENMPRRNLVTWNSMIAGYGSHGN 1033
Query: 93 YQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLL-FKLGSSRN 151
+E + LF EM + + + F A I C V E G + L+ + G
Sbjct: 1034 CEEAVRLFKEMKRSETAPDEVTFLALITSCSHSGMV-----EEGLNLFQLMRIEYGVEPR 1088
Query: 152 ISLTGSLINFYGKFRCLEDA 171
+ S+++ G+ L+DA
Sbjct: 1089 MEHYASVVDLLGRAGRLDDA 1108
>gi|242075862|ref|XP_002447867.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
gi|241939050|gb|EES12195.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
Length = 688
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 95/339 (28%), Positives = 144/339 (42%), Gaps = 48/339 (14%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
+ + C +KDS E ++ + R + + L+ M+ C + + AR++FD M
Sbjct: 154 FASALSACAAEKDSRTG-EQVHGLVARSPHADDVHIRSALVDMYAKCERPEDARRVFDAM 212
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVC-VLKACVCTM 131
P R+ SW +I Y E + LF EMM P + + V+ AC
Sbjct: 213 PERNVVSWNSLITCYEQNGPVGEALMLFVEMMAAG------FSPDEVTLSSVMSACAGLA 266
Query: 132 NMELGKQVHGLLFKLG--------------------------------SSRNISLTGSLI 159
G+QVH + K SR+I S++
Sbjct: 267 ADREGRQVHAHMVKCDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSIVSETSIL 326
Query: 160 NFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSY 219
Y K +EDA VFSQ+ N + W I + G + F ++ R+ I Y
Sbjct: 327 TGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHY 386
Query: 220 TFSSVLKACGGVDDDGNCGRQMHANIVK------IGLESDEYVQCGLVDMYGKCRLLRDA 273
T+ +VL ACG + D G+Q H +++K G ESD +V LVDMY K + D
Sbjct: 387 TYGNVLNACGNI-ADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDG 445
Query: 274 ERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLM 312
+VFE + + N+ SWNAM+VGY +NG +A M
Sbjct: 446 AKVFERMAARDNV-SWNAMIVGYAQNGRAKDALHLFERM 483
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 91/349 (26%), Positives = 143/349 (40%), Gaps = 62/349 (17%)
Query: 47 LFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLF------ 100
LN L+ + G+L AR++FDE+PLR+ S+ ++ Y + E LF
Sbjct: 53 FLLNTLVSTYARLGRLRDARRVFDEIPLRNTFSYNALLSAYARLGRPDEARALFEAIPDP 112
Query: 101 ---------AEMMKRKKGHML-------------LVFPAWIIVCVLKACVCTMNMELGKQ 138
A + + +GH V A+ L AC + G+Q
Sbjct: 113 DQCSYNAVVAALARHGRGHAADALRFLAAMHADDFVLNAYSFASALSACAAEKDSRTGEQ 172
Query: 139 VHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGH 198
VHGL+ + + ++ + +L++ Y K EDA VF + N V W + I + G
Sbjct: 173 VHGLVARSPHADDVHIRSALVDMYAKCERPEDARRVFDAMPERNVVSWNSLITCYEQNGP 232
Query: 199 FHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIG-LESDEYVQ 257
+ F EM + T SSV+ AC G+ D GRQ+HA++VK L D +
Sbjct: 233 VGEALMLFVEMMAAGFSPDEVTLSSVMSACAGLAADRE-GRQVHAHMVKCDRLRDDMVLN 291
Query: 258 CGLVDMYGKCRL-------------------------------LRDAERVFELIVDKKNI 286
LVDMY KC + DA+ VF +V+K N+
Sbjct: 292 NALVDMYAKCGRTWEARCIFDSMPSRSIVSETSILTGYAKSANVEDAQVVFSQMVEK-NV 350
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
+WN ++ Y +NG EA + +K I ++ AC +I+
Sbjct: 351 IAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIA 399
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 90/191 (47%), Gaps = 4/191 (2%)
Query: 150 RNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFH--QVFNDFK 207
RN +L++ Y + ++A +F + + + A + R G H
Sbjct: 81 RNTFSYNALLSAYARLGRPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAADALRFLA 140
Query: 208 EMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKC 267
M + N+Y+F+S L AC + D G Q+H + + D +++ LVDMY KC
Sbjct: 141 AMHADDFVLNAYSFASALSACA-AEKDSRTGEQVHGLVARSPHADDVHIRSALVDMYAKC 199
Query: 268 RLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDL 327
DA RVF+ + ++ N+ SWN+++ Y +NG EA M A+G E ++ +
Sbjct: 200 ERPEDARRVFDAMPER-NVVSWNSLITCYEQNGPVGEALMLFVEMMAAGFSPDEVTLSSV 258
Query: 328 RIACSSISASK 338
AC+ ++A +
Sbjct: 259 MSACAGLAADR 269
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 71/294 (24%), Positives = 132/294 (44%), Gaps = 38/294 (12%)
Query: 35 HIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQ 94
H+ K ++ ++ N L+ M+ CG+ AR +FD MP R S ++ GY A+ +
Sbjct: 277 HMVKCDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSIVSETSILTGYAKSANVE 336
Query: 95 ECITLFAEMMKRK--KGHMLL-----------------------VFPA-WIIVCVLKACV 128
+ +F++M+++ ++L+ ++P + VL AC
Sbjct: 337 DAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACG 396
Query: 129 CTMNMELGKQVH------GLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
+++LG+Q H G F G ++ + SL++ Y K ++D VF ++ +
Sbjct: 397 NIADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARD 456
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG--GVDDDGNCGRQ 240
V W A IV + G + F+ M +S T VL ACG G+ D+G R
Sbjct: 457 NVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSACGHSGLVDEGR--RY 514
Query: 241 MHANIVKIGL-ESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
H+ G+ S ++ C +VD+ G+ L++AE + + + + W ++L
Sbjct: 515 FHSMTEDHGITPSRDHYTC-MVDLLGRAGHLKEAEELINDMPMEPDSVLWASLL 567
Score = 42.4 bits (98), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYI 297
R HA I+K + + ++ LV Y + LRDA RVF+ I +N S+NA+L Y
Sbjct: 36 ARAAHARILKSPVAGETFLLNTLVSTYARLGRLRDARRVFDEI-PLRNTFSYNALLSAYA 94
Query: 298 RNGLYVEA 305
R G EA
Sbjct: 95 RLGRPDEA 102
>gi|449485624|ref|XP_004157227.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g57430, chloroplastic-like [Cucumis sativus]
Length = 863
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 88/314 (28%), Positives = 138/314 (43%), Gaps = 49/314 (15%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEM-MKRKKGHMLL 113
++ C AR+L + D SW+ +I GYV +E + + EM + KG+
Sbjct: 91 LYSKCQCFRVARKLVIDSSEPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGN--- 147
Query: 114 VFPAWIIVCVLKACVCTMNMELGKQ----------------------------------- 138
+ VLK C T N+ELGKQ
Sbjct: 148 ---EFTFSSVLKGCSLTRNLELGKQIHRVALVTEMISTGISPNEFSLSTVLNACAGLEDE 204
Query: 139 -----VHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNN 193
VHG L KLG + +L++ Y K C E A VF ++ + + V W A I
Sbjct: 205 NYGMKVHGYLIKLGYDSDPFSANALLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGC 264
Query: 194 CREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESD 253
+MG R+ + +T SS LKAC + GRQ+H+ ++K+ +E D
Sbjct: 265 VLHEKNDLALKLLGKMGSYRVAPSMFTLSSALKACAAIGLV-KLGRQLHSALMKMDMEPD 323
Query: 254 EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMK 313
+V GL+DMY KC LL+DA VF+L+ K++ WN+++ GY G +EA M
Sbjct: 324 SFVGVGLIDMYSKCGLLQDARMVFDLM-PXKDVIVWNSIISGYSNCGYDIEAMSLFTNMY 382
Query: 314 ASGIQIQESLINDL 327
G++ ++ ++ +
Sbjct: 383 KEGLEFNQTTLSTI 396
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 86/287 (29%), Positives = 140/287 (48%), Gaps = 7/287 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N LL M+ G + A +F E+P D SW +I G V + L +M G
Sbjct: 227 NALLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHEKNDLALKLLGKM-----G 281
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ + + LKAC ++LG+Q+H L K+ + + LI+ Y K L+
Sbjct: 282 SYRVAPSMFTLSSALKACAAIGLVKLGRQLHSALMKMDMEPDSFVGVGLIDMYSKCGLLQ 341
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
DA VF + + +VW + I G+ + + F M +E ++ N T S++LK+
Sbjct: 342 DARMVFDLMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGLEFNQTTLSTILKSTA 401
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
G +G C Q+H +K G + D YV L+D YGKC LL DA +VFE + +++ ++
Sbjct: 402 GSQANGFC-EQVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVFE-VCPAEDLVAY 459
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+M+ Y + GL EA K M+ I+ + + L AC+++SA
Sbjct: 460 TSMITAYSQYGLGEEALKMYLRMQDRDIKPDAFIFSSLFNACANLSA 506
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 84/279 (30%), Positives = 135/279 (48%), Gaps = 7/279 (2%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
+++++P L+ M+ CG L AR +FD MP +D W +I GY + E ++
Sbjct: 317 KMDMEPDSFVGVGLIDMYSKCGLLQDARMVFDLMPXKDVIVWNSIISGYSNCGYDIEAMS 376
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
LF M K L F + +LK+ + +QVH + K G + + SL
Sbjct: 377 LFTNMYKEG-----LEFNQTTLSTILKSTAGSQANGFCEQVHTISIKSGYQYDGYVANSL 431
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
++ YGK LEDA VF + V +T+ I + G + + M IK ++
Sbjct: 432 LDSYGKCCLLEDAAKVFEVCPAEDLVAYTSMITAYSQYGLGEEALKMYLRMQDRDIKPDA 491
Query: 219 YTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE 278
+ FSS+ AC + G+Q+H +++K GL SD + LV+MY KC + DA +F
Sbjct: 492 FIFSSLFNACANLSAYEQ-GKQIHVHVLKCGLLSDVFAGNSLVNMYAKCGSIDDASCIFN 550
Query: 279 LIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGI 317
I + I SW+AM+ G ++G +A + Y M +GI
Sbjct: 551 EI-SWRGIVSWSAMIGGLAQHGHGRKALQLFYQMLKNGI 588
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 110/247 (44%), Gaps = 11/247 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N LL + C L+ A ++F+ P D ++ MI Y +E + ++ M R
Sbjct: 429 NSLLDSYGKCCLLEDAAKVFEVCPAEDLVAYTSMITAYSQYGLGEEALKMYLRMQDRD-- 486
Query: 110 HMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+ P A+I + AC E GKQ+H + K G ++ SL+N Y K +
Sbjct: 487 ----IKPDAFIFSSLFNACANLSAYEQGKQIHVHVLKCGLLSDVFAGNSLVNMYAKCGSI 542
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+DA +F+++ V W+A I + GH + F +M + I N T SVL AC
Sbjct: 543 DDASCIFNEISWRGIVSWSAMIGGLAQHGHGRKALQLFYQMLKNGILPNHITLVSVLSAC 602
Query: 229 --GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
G+ + + + I + E+ C +VD+ G+ L +A + + + + +
Sbjct: 603 NHAGLVTEARRFFGLMEKLFGI-TPTQEHYAC-MVDILGRVGRLDEAMVLVKEMPFQASA 660
Query: 287 ASWNAML 293
A W A+L
Sbjct: 661 AVWGALL 667
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 88/222 (39%), Gaps = 42/222 (18%)
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
+N Y K +C A + + V W+A I + G + + EM K N
Sbjct: 89 VNLYSKCQCFRVARKLVIDSSEPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNE 148
Query: 219 YTFSSVLK----------------------------------------ACGGVDDDGNCG 238
+TFSSVLK AC G++D+ N G
Sbjct: 149 FTFSSVLKGCSLTRNLELGKQIHRVALVTEMISTGISPNEFSLSTVLNACAGLEDE-NYG 207
Query: 239 RQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIR 298
++H ++K+G +SD + L+DMY K A VF I K +I SWNA++ G +
Sbjct: 208 MKVHGYLIKLGYDSDPFSANALLDMYAKSGCPEAAIAVFYEI-PKPDIVSWNAVIAGCVL 266
Query: 299 NGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKIN 340
+ A K L M + + ++ AC++I K+
Sbjct: 267 HEKNDLALKLLGKMGSYRVAPSMFTLSSALKACAAIGLVKLG 308
Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 234 DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD--KKNIASWNA 291
D + G +HA I+++GL V++Y KC+ R A + L++D + ++ SW+A
Sbjct: 65 DVSSGMAIHARIIRLGLLGLRNRL---VNLYSKCQCFRVARK---LVIDSSEPDLVSWSA 118
Query: 292 MLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
++ GY++NG EA Y M G + E + + CS
Sbjct: 119 LISGYVQNGRGEEALLTYYEMYLLGAKGNEFTFSSVLKGCS 159
>gi|359486457|ref|XP_002275344.2| PREDICTED: pentatricopeptide repeat-containing protein At2g40720
[Vitis vinifera]
Length = 836
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/298 (27%), Positives = 144/298 (48%), Gaps = 7/298 (2%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
++N + LL M+ G ++ A+++FD++ ++ MI ++ + +
Sbjct: 272 KMNFQDDPYVCTSLLTMYAKSGSVEDAKKVFDQVLDKEVELRNAMISAFIGNGRAYDALG 331
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
L+ +M K G + ++ I +L C + + G+ VH + K N+++ +L
Sbjct: 332 LYNKM---KAGETPV--DSFTISSLLSGCSVVGSYDFGRTVHAEVIKRSMQSNVAIQSAL 386
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
+ Y K EDAD VF +K + V W + I C+ F + F+ M +E +K +S
Sbjct: 387 LTMYYKCGSTEDADSVFYTMKERDVVAWGSMIAGFCQNRRFKDALDLFRAMEKEGVKADS 446
Query: 219 YTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE 278
+SV+ A G+++ G +H +K GLESD +V C LVDMY K AE VF
Sbjct: 447 DVMTSVISAGLGLENV-ELGHLIHGFAIKRGLESDVFVACSLVDMYSKFGFAESAEMVFS 505
Query: 279 LIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+ + KN+ +WN+M+ Y NGL + L + G + I + +A SS++A
Sbjct: 506 SMPN-KNLVAWNSMISCYSWNGLPEMSINLLPQILQHGFYLDSVSITTVLVAVSSVAA 562
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 86/329 (26%), Positives = 153/329 (46%), Gaps = 14/329 (4%)
Query: 7 PITTDMYTCLIKECTFQKDSAGAFELLNHIRKRV---NIKPTLLFLNRLLLMHVSCGQLD 63
P+ + + L+ C+ G+++ + V +++ + + LL M+ CG +
Sbjct: 342 PVDSFTISSLLSGCSV----VGSYDFGRTVHAEVIKRSMQSNVAIQSALLTMYYKCGSTE 397
Query: 64 TARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCV 123
A +F M RD +W MI G+ +++ + LF M K + + ++ V
Sbjct: 398 DADSVFYTMKERDVVAWGSMIAGFCQNRRFKDALDLFRAMEKEG-----VKADSDVMTSV 452
Query: 124 LKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNT 183
+ A + N+ELG +HG K G ++ + SL++ Y KF E A+ VFS + N
Sbjct: 453 ISAGLGLENVELGHLIHGFAIKRGLESDVFVACSLVDMYSKFGFAESAEMVFSSMPNKNL 512
Query: 184 VVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHA 243
V W + I G N ++ + +S + ++VL A V G+ +HA
Sbjct: 513 VAWNSMISCYSWNGLPEMSINLLPQILQHGFYLDSVSITTVLVAVSSVAALLK-GKTLHA 571
Query: 244 NIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYV 303
+++ + SD V+ L+DMY KC L+ A+ +FE + ++N+ +WN+M+ GY +G
Sbjct: 572 YQIRLQIPSDLQVENALIDMYVKCGCLKYAQLIFENM-PRRNLVTWNSMIAGYGSHGNCE 630
Query: 304 EATKFLYLMKASGIQIQESLINDLRIACS 332
EA + MK S E L +CS
Sbjct: 631 EAVRLFKEMKRSETAPDEVTFLALITSCS 659
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 78/293 (26%), Positives = 127/293 (43%), Gaps = 36/293 (12%)
Query: 52 LLLMHVSCGQLDTARQLFDEMP-----LRDFNSWAVMIVGYVDVADYQECITLFAEMMKR 106
L+ M+V CG L +A Q+FD+M D W +I GY ++E + F M +
Sbjct: 96 LINMYVKCGLLGSALQVFDKMSESRDSAPDITVWNPVIDGYFKYGHFEEGLAQFCRMQEL 155
Query: 107 KKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166
+W + G+Q+HG + + + L +LI Y
Sbjct: 156 ----------SWYMA--------------GRQIHGYIIRNMFEGDPYLETALIGMYSSCS 191
Query: 167 CLEDADFVFSQLK-RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
+A +F +L+ R N V W I G + + + E K S +F+
Sbjct: 192 RPMEAWSLFGKLENRSNIVAWNVMIGGFVENGMWEKSLELYSLAKNENCKLVSASFTGAF 251
Query: 226 KAC--GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
AC G V D GRQ+H +++K+ + D YV L+ MY K + DA++VF+ ++DK
Sbjct: 252 TACSHGEVLD---FGRQVHCDVIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKVFDQVLDK 308
Query: 284 KNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+ + NAM+ +I NG +A MKA + I+ L CS + +
Sbjct: 309 E-VELRNAMISAFIGNGRAYDALGLYNKMKAGETPVDSFTISSLLSGCSVVGS 360
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/234 (23%), Positives = 99/234 (42%), Gaps = 25/234 (10%)
Query: 104 MKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYG 163
+ K H L + +LK C N+ G+ +H + +G + + SLIN Y
Sbjct: 42 LHSKTPHSALTTAKFTFPSLLKTCASLSNLYHGRTIHASIVTMGLQSDPYIATSLINMYV 101
Query: 164 KFRCLEDADFVFSQLKRH-----NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
K L A VF ++ + VW I + GHF + F R+++ S
Sbjct: 102 KCGLLGSALQVFDKMSESRDSAPDITVWNPVIDGYFKYGHFEEGLAQFC-----RMQELS 156
Query: 219 YTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE 278
+ + GRQ+H I++ E D Y++ L+ MY C +A +F
Sbjct: 157 WYMA---------------GRQIHGYIIRNMFEGDPYLETALIGMYSSCSRPMEAWSLFG 201
Query: 279 LIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+ ++ NI +WN M+ G++ NG++ ++ + L K ++ + ACS
Sbjct: 202 KLENRSNIVAWNVMIGGFVENGMWEKSLELYSLAKNENCKLVSASFTGAFTACS 255
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 97/225 (43%), Gaps = 11/225 (4%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ G ++A +F MP ++ +W MI Y + I L ++++
Sbjct: 487 LVDMYSKFGFAESAEMVFSSMPNKNLVAWNSMISCYSWNGLPEMSINLLPQILQHG---- 542
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+ I VL A + GK +H +L ++ + +LI+ Y K CL+ A
Sbjct: 543 -FYLDSVSITTVLVAVSSVAALLKGKTLHAYQIRLQIPSDLQVENALIDMYVKCGCLKYA 601
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--- 228
+F + R N V W + I G+ + FKEM R + TF +++ +C
Sbjct: 602 QLIFENMPRRNLVTWNSMIAGYGSHGNCEEAVRLFKEMKRSETAPDEVTFLALITSCSHS 661
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDA 273
G V++ N + M ++ G+E +VD+ G+ L DA
Sbjct: 662 GMVEEGLNLFQLMR---IEYGVEPRMEHYASVVDLLGRAGRLDDA 703
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 66/122 (54%), Gaps = 5/122 (4%)
Query: 188 AKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVK 247
+KI ++G + Q + + +TF S+LK C + + + GR +HA+IV
Sbjct: 25 SKIKALVQQGKYSQALELHSKTPHSALTTAKFTFPSLLKTCASLSNLYH-GRTIHASIVT 83
Query: 248 IGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS----WNAMLVGYIRNGLYV 303
+GL+SD Y+ L++MY KC LL A +VF+ + + ++ A WN ++ GY + G +
Sbjct: 84 MGLQSDPYIATSLINMYVKCGLLGSALQVFDKMSESRDSAPDITVWNPVIDGYFKYGHFE 143
Query: 304 EA 305
E
Sbjct: 144 EG 145
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 6/140 (4%)
Query: 33 LNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVAD 92
L+ + R+ I L N L+ M+V CG L A+ +F+ MP R+ +W MI GY +
Sbjct: 569 LHAYQIRLQIPSDLQVENALIDMYVKCGCLKYAQLIFENMPRRNLVTWNSMIAGYGSHGN 628
Query: 93 YQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLL-FKLGSSRN 151
+E + LF EM + + + F A I C V E G + L+ + G
Sbjct: 629 CEEAVRLFKEMKRSETAPDEVTFLALITSCSHSGMV-----EEGLNLFQLMRIEYGVEPR 683
Query: 152 ISLTGSLINFYGKFRCLEDA 171
+ S+++ G+ L+DA
Sbjct: 684 MEHYASVVDLLGRAGRLDDA 703
>gi|357165628|ref|XP_003580444.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
chloroplastic-like [Brachypodium distachyon]
Length = 779
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 87/319 (27%), Positives = 148/319 (46%), Gaps = 8/319 (2%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCG 60
M + +P+ + I + +D +L ++ K + ++ N L++M+ CG
Sbjct: 302 MGSKGVPLDVVTFLSAITAASQSQDGKLGQQLHGYLMKGMRSTLPVILGNALVVMYSRCG 361
Query: 61 QLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWII 120
+ A LFD++P +D SW M+ +V E + L +M K V A +
Sbjct: 362 NVHAAFDLFDQLPEKDIVSWNTMVTAFVQNDFDFEGLLLVYQMHKSG-----FVADAVTL 416
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
VL A T ++++GKQ HG L + G L LIN Y K ++ A VF
Sbjct: 417 TAVLSAASNTGDLQIGKQSHGYLIRHGIEGE-GLESYLINMYSKSGHIDMAQRVFDGYGN 475
Query: 181 -HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGR 239
+ V W A I + G Q F+ M ++ S T +SVL AC V + G+
Sbjct: 476 DRDEVTWNAMIAGYTQSGQPEQAVLAFRAMVEAGVEPTSVTLASVLPACEPVGEGVQAGK 535
Query: 240 QMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRN 299
Q+H+ ++ L+++ +V LVDMY KC + AE VF+ + +K + ++ M+ G ++
Sbjct: 536 QIHSFALRHSLDTNIFVGTALVDMYSKCGEITAAENVFDRMTEKSTV-TYTTMISGLGQH 594
Query: 300 GLYVEATKFLYLMKASGIQ 318
G A Y M+ +G++
Sbjct: 595 GFGDRALFLFYSMQDNGLK 613
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/306 (24%), Positives = 140/306 (45%), Gaps = 19/306 (6%)
Query: 36 IRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQE 95
I+ V L ++ + M G + +AR +FD ++ W MI GYV + E
Sbjct: 234 IKHGVEYVSDLFVVSSAIAMFSEIGDVQSARMVFDHAAKKNIEVWNTMITGYVQNGQFSE 293
Query: 96 CITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFK-LGSSRNISL 154
+ LF ++M K + +V + + A + + +LG+Q+HG L K + S+ + L
Sbjct: 294 AMDLFIQIMGSKGVPLDVV----TFLSAITAASQSQDGKLGQQLHGYLMKGMRSTLPVIL 349
Query: 155 TGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFK------E 208
+L+ Y + + A +F QL + V W + F Q DF+ +
Sbjct: 350 GNALVVMYSRCGNVHAAFDLFDQLPEKDIVSWNTMVTA------FVQNDFDFEGLLLVYQ 403
Query: 209 MGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCR 268
M + ++ T ++VL A D G+Q H +++ G+E E ++ L++MY K
Sbjct: 404 MHKSGFVADAVTLTAVLSAASNTGDL-QIGKQSHGYLIRHGIEG-EGLESYLINMYSKSG 461
Query: 269 LLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLR 328
+ A+RVF+ + ++ +WNAM+ GY ++G +A M +G++ + +
Sbjct: 462 HIDMAQRVFDGYGNDRDEVTWNAMIAGYTQSGQPEQAVLAFRAMVEAGVEPTSVTLASVL 521
Query: 329 IACSSI 334
AC +
Sbjct: 522 PACEPV 527
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 82/323 (25%), Positives = 141/323 (43%), Gaps = 22/323 (6%)
Query: 7 PITTDMYT--CLIKECTFQKDSAGAFELLNHIRKRVNIKP-TLLFLNRLLLMHVSC---- 59
P +D YT C + C + + H+ +R P T + N LL ++ SC
Sbjct: 95 PPRSDHYTYSCALTACARSRRLRLGRSVHAHLLRRARSLPDTAVLRNSLLNLYASCARYR 154
Query: 60 -GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAW 118
G +D R+LFD P R+ SW ++ YV E + +F M++ + P
Sbjct: 155 HGGVDVVRRLFDATPKRNVVSWNTLVGWYVKTGRPYEALEMFMRMLEDG------IRPTP 208
Query: 119 IIVCVLKACVCTMNMELGKQVHGLLFKLGSS--RNISLTGSLINFYGKFRCLEDADFVFS 176
+ + + + ++G+L K G ++ + S I + + ++ A VF
Sbjct: 209 VSFVNVFPAAASDDPSWPFFLYGMLIKHGVEYVSDLFVVSSAIAMFSEIGDVQSARMVFD 268
Query: 177 QLKRHNTVVWTAKIVNNCREGHFHQVFNDFKE-MGRERIKKNSYTFSSVLKACGGVDDDG 235
+ N VW I + G F + + F + MG + + + TF S + A DG
Sbjct: 269 HAAKKNIEVWNTMITGYVQNGQFSEAMDLFIQIMGSKGVPLDVVTFLSAITAA-SQSQDG 327
Query: 236 NCGRQMHANIVKIGLESDEYVQCG--LVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
G+Q+H ++K G+ S V G LV MY +C + A +F+ + +K+I SWN M+
Sbjct: 328 KLGQQLHGYLMK-GMRSTLPVILGNALVVMYSRCGNVHAAFDLFDQL-PEKDIVSWNTMV 385
Query: 294 VGYIRNGLYVEATKFLYLMKASG 316
+++N E +Y M SG
Sbjct: 386 TAFVQNDFDFEGLLLVYQMHKSG 408
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 112/250 (44%), Gaps = 17/250 (6%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPL-RDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGH 110
L+ M+ G +D A+++FD RD +W MI GY ++ + F M++
Sbjct: 453 LINMYSKSGHIDMAQRVFDGYGNDRDEVTWNAMIAGYTQSGQPEQAVLAFRAMVEAG--- 509
Query: 111 MLLVFPAWI-IVCVLKAC-VCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
V P + + VL AC ++ GKQ+H + NI + +L++ Y K +
Sbjct: 510 ---VEPTSVTLASVLPACEPVGEGVQAGKQIHSFALRHSLDTNIFVGTALVDMYSKCGEI 566
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
A+ VF ++ +TV +T I + G + F M +K ++ TF + + AC
Sbjct: 567 TAAENVFDRMTEKSTVTYTTMISGLGQHGFGDRALFLFYSMQDNGLKPDAVTFLAAISAC 626
Query: 229 ---GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
G VD+ G ++ ++ GL + C +VD+ K + +A E + + N
Sbjct: 627 NYSGLVDE----GLSLYRSMETFGLSATPQHHCCIVDLLAKAGRVEEAYDFVESLGEDGN 682
Query: 286 -IASWNAMLV 294
IA W ++L
Sbjct: 683 FIAIWGSLLA 692
Score = 41.6 bits (96), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 60/143 (41%), Gaps = 10/143 (6%)
Query: 198 HFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIG--LESDEY 255
H ++ R + + YT+S L AC R +HA++++ L
Sbjct: 80 HALGLYGVLNHAARPPPRSDHYTYSCALTACARSRRLRLG-RSVHAHLLRRARSLPDTAV 138
Query: 256 VQCGLVDMYGKCRLLRDA-----ERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLY 310
++ L+++Y C R R+F+ K+N+ SWN ++ Y++ G EA +
Sbjct: 139 LRNSLLNLYASCARYRHGGVDVVRRLFD-ATPKRNVVSWNTLVGWYVKTGRPYEALEMFM 197
Query: 311 LMKASGIQIQE-SLINDLRIACS 332
M GI+ S +N A S
Sbjct: 198 RMLEDGIRPTPVSFVNVFPAAAS 220
>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
Length = 2598
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 98/336 (29%), Positives = 159/336 (47%), Gaps = 13/336 (3%)
Query: 4 LCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLL-MHVSCGQL 62
L L T + C IK C+ D ++H + V T LF++ L+ M+ CGQL
Sbjct: 2009 LGLIPTRSSFPCTIKSCSALCDLVSG--RMSHQQAFVFGFETDLFVSSALIDMYSKCGQL 2066
Query: 63 DTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRK---KGHMLLVFPAWI 119
AR LFDE+PLR+ SW MI GYV + LF + ++ + + + + +
Sbjct: 2067 KDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVV 2126
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
+V VL AC + + VHG + K G +I + +L++ Y K + VF ++
Sbjct: 2127 MVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWME 2186
Query: 180 RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRE-RIKKNSYTFSSVLKAC--GGVDDDGN 236
+ + W + I + G + F M R ++ N+ T S+VL AC G G
Sbjct: 2187 EKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGK 2246
Query: 237 CGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGY 296
C +H ++K+ LE + V ++DMY KC + A++ F+ + +KN+ SW AM+ GY
Sbjct: 2247 C---IHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRM-KEKNVKSWTAMVAGY 2302
Query: 297 IRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+G EA Y M +G++ + ACS
Sbjct: 2303 GMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACS 2338
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 83/323 (25%), Positives = 144/323 (44%), Gaps = 48/323 (14%)
Query: 47 LFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR 106
L +L+ ++ + G++ A LF ++ +W ++I ++ + L+ M+ +
Sbjct: 60 LLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQ 119
Query: 107 KKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166
FP V+KAC ++++LGK VHG L K G S ++ + +LI+FY F+
Sbjct: 120 GIAADKFTFP-----FVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFY--FK 172
Query: 167 C---------------------------------LEDADFVFSQLKRHNTVVWTAKIVNN 193
C L++A +F ++ N V WTA I
Sbjct: 173 CGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGY 232
Query: 194 CREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDG--NCGRQMHANIVKIGLE 251
R + FK M E I N YT S++KAC + G GR +H +K +E
Sbjct: 233 IRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEM---GILTLGRGIHDYAIKNCIE 289
Query: 252 SDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYL 311
Y+ L+DMY KC ++DA VFE + +K++ +WN+M+ +GL EA
Sbjct: 290 IGVYLGTALIDMYSKCGSIKDAIEVFE-TMPRKSLPTWNSMITSLGVHGLGQEALNLFSE 348
Query: 312 MKASGIQIQESLINDLRIACSSI 334
M+ + ++ I + + C+ +
Sbjct: 349 MER--VNVKPDAITFIGVLCACV 369
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 117/248 (47%), Gaps = 12/248 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ + CGQ ++++FD M +D SW MI Y E + +F M++
Sbjct: 2163 NTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVR---- 2218
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
H+ + + A + VL AC + GK +H + K+ N+ + S+I+ Y K +E
Sbjct: 2219 HVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVE 2278
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC- 228
A F ++K N WTA + G + + F +M R +K N TF SVL AC
Sbjct: 2279 MAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACS 2338
Query: 229 --GGVDDDGNCGRQM-HANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
G V++ + M H ++ G+ E+ C +VD++G+ L +A + + + K +
Sbjct: 2339 HAGLVEEGWHWFNAMKHKYDIEPGI---EHYGC-MVDLFGRAGCLNEAYNLIKRMKMKPD 2394
Query: 286 IASWNAML 293
W ++L
Sbjct: 2395 FVVWGSLL 2402
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 97/228 (42%), Gaps = 31/228 (13%)
Query: 137 KQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCRE 196
+Q+H + + G S + LT LI+ Y + A +F Q++ T W I N
Sbjct: 44 RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTIN 103
Query: 197 GHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYV 256
G Q +K M + I + +TF V+KAC + G+ +H +++K G D +V
Sbjct: 104 GLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSI-DLGKVVHGSLIKYGFSGDVFV 162
Query: 257 QCGLVDMYGKCRLLRDAERVFELI------------------------------VDKKNI 286
Q L+D Y KC R A +VFE + + KN+
Sbjct: 163 QNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNV 222
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
SW AM+ GYIRN EA + M+A I E + L AC+ +
Sbjct: 223 VSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEM 270
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 70/144 (48%), Gaps = 10/144 (6%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+ CG+++ A++ FD M ++ SW M+ GY +E + +F +M++ V
Sbjct: 2270 MYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAG------V 2323
Query: 115 FPAWI-IVCVLKACVCTMNMELGKQ-VHGLLFKLGSSRNISLTGSLINFYGKFRCLEDAD 172
P +I V VL AC +E G + + K I G +++ +G+ CL +A
Sbjct: 2324 KPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAY 2383
Query: 173 FVFSQLK-RHNTVVWTAKIVNNCR 195
+ ++K + + VVW ++ CR
Sbjct: 2384 NLIKRMKMKPDFVVW-GSLLGACR 2406
>gi|307136370|gb|ADN34182.1| pentatricopeptide repeat-containing protein [Cucumis melo subsp.
melo]
Length = 1131
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 87/301 (28%), Positives = 146/301 (48%), Gaps = 7/301 (2%)
Query: 38 KRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECI 97
+RV P + L ++ +V+ G+L AR+LF ++P + +W VMI G+ +E I
Sbjct: 235 QRVGHVPDQIALVTVINAYVALGRLADARKLFTQIPNPNVVAWNVMISGHAKRGFAEEAI 294
Query: 98 TLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGS 157
+ F E+ +K G L + VL A + G VH K G N+ + +
Sbjct: 295 SFFLEL--KKTG---LKATRSSLGSVLSAIASLSMLNYGSMVHAQAIKEGLDDNVYVGSA 349
Query: 158 LINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKN 217
L+N Y K ++ A VF+ L N V+W A + + G +V F M R + +
Sbjct: 350 LVNMYAKCSKMDAAKQVFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFFSYMKRHGPQPD 409
Query: 218 SYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVF 277
+TF+S+ AC + + G Q+H ++K S+ +V LVDMY K L++A + F
Sbjct: 410 EFTFTSIFSACASLHYL-DFGGQLHTVMIKNKFTSNLFVANALVDMYAKSGALKEARKQF 468
Query: 278 ELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISAS 337
E + N+ SWNA++VGY++ EA M ++G+ E + + AC+++
Sbjct: 469 EFMKIHDNV-SWNAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACANVKEF 527
Query: 338 K 338
K
Sbjct: 528 K 528
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 87/288 (30%), Positives = 144/288 (50%), Gaps = 15/288 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+ L+ M+V CG + AR +F MP R+ S +I GY ++ +E I LF E+
Sbjct: 550 SSLIDMYVKCGVVLAARDVFYSMPYRNVVSINALIAGYT-MSHLEEAIHLFQEI------ 602
Query: 110 HMLLVFPAWIIVC-VLKACVCTMNMELGKQVHGLLFKLG---SSRNISLTGSLINFYGKF 165
M+ + P + +L C + LG+Q+HG + K G SS + + SL+ Y
Sbjct: 603 QMVGLKPTEVTFAGLLDGCDGAFMLNLGRQIHGQVMKWGFLSSSEMVCV--SLLCMYMNS 660
Query: 166 RCLEDADFVFSQLK-RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
+ D++ +FS+L+ VVWTA I ++ H + ++ M + I + TF+SV
Sbjct: 661 QRFADSETLFSELQYPKGLVVWTALISGYAQQNHHEKALQFYQHMRSDNILPDQATFASV 720
Query: 225 LKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
L+AC G+ G+++H+ I G DE L+DMY KC ++ + +VF + +
Sbjct: 721 LRACAGMSSL-QTGQEVHSLIFHTGFNMDEITCSSLIDMYAKCGDVKGSLQVFHEMPRRN 779
Query: 285 NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
++ SWN+M+VG +NG EA + M+ I E + ACS
Sbjct: 780 SVISWNSMIVGLAKNGYAEEALEIFKQMEQQSIIPDEVTFLGVLSACS 827
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 83/297 (27%), Positives = 132/297 (44%), Gaps = 18/297 (6%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L N L+ M+ G L AR+ F+ M + D SW +IVGYV E +F M+
Sbjct: 445 LFVANALVDMYAKSGALKEARKQFEFMKIHDNVSWNAIIVGYVQEEYNDEAFFMFRRMVS 504
Query: 106 RKKGHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
V P + + ++ AC + G+Q H LL K+G + SLI+ Y K
Sbjct: 505 NG------VLPDEVSLASIVSACANVKEFKQGQQCHCLLVKVGLDTSTCAGSSLIDMYVK 558
Query: 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
+ A VF + N V A I H + + F+E+ +K TF+ +
Sbjct: 559 CGVVLAARDVFYSMPYRNVVSINALIAGYTMS-HLEEAIHLFQEIQMVGLKPTEVTFAGL 617
Query: 225 LKACGGVDDDG----NCGRQMHANIVKIG-LESDEYVQCGLVDMYGKCRLLRDAERVFEL 279
L C DG N GRQ+H ++K G L S E V L+ MY + D+E +F
Sbjct: 618 LDGC-----DGAFMLNLGRQIHGQVMKWGFLSSSEMVCVSLLCMYMNSQRFADSETLFSE 672
Query: 280 IVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+ K + W A++ GY + + +A +F M++ I ++ + AC+ +S+
Sbjct: 673 LQYPKGLVVWTALISGYAQQNHHEKALQFYQHMRSDNILPDQATFASVLRACAGMSS 729
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 93/184 (50%), Gaps = 2/184 (1%)
Query: 133 MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192
+ K +H K+G L +++ Y K ++ A FS+L++ + W + +
Sbjct: 57 LSTAKVIHSKSLKIGVGLKGLLGNVIVDLYVKCGNVDFAQKAFSRLEKKDVFAWNSVLSM 116
Query: 193 NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLES 252
G F V F M ++ N +TF+ VL AC G+ D N G+Q+H + K+G
Sbjct: 117 YLDHGLFATVVQSFVCMWNHGVRPNEFTFAMVLSACSGLQDI-NYGKQVHCGVFKMGFGF 175
Query: 253 DEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLM 312
+ Q GL+DMY KCR LRDA VF+ ++ + SW ++ GY+R+G +EA K M
Sbjct: 176 RSFCQGGLIDMYAKCRNLRDARLVFDGALNLDTV-SWTTLIAGYVRDGFPMEAVKVFDKM 234
Query: 313 KASG 316
+ G
Sbjct: 235 QRVG 238
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/290 (24%), Positives = 118/290 (40%), Gaps = 44/290 (15%)
Query: 47 LFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR 106
L N ++ ++V CG +D A++ F + +D +W ++ Y+D + + F M
Sbjct: 77 LLGNVIVDLYVKCGNVDFAQKAFSRLEKKDVFAWNSVLSMYLDHGLFATVVQSFVCMWNH 136
Query: 107 KKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
V P + VL AC ++ GKQVH +FK+G G LI+ Y K
Sbjct: 137 G------VRPNEFTFAMVLSACSGLQDINYGKQVHCGVFKMGFGFRSFCQGGLIDMYAKC 190
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
R L DA VF +TV WT I R+G + F +M R
Sbjct: 191 RNLRDARLVFDGALNLDTVSWTTLIAGYVRDGFPMEAVKVFDKMQR-------------- 236
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
+G D+ +++ Y L DA ++F I + N
Sbjct: 237 ----------------------VGHVPDQIALVTVINAYVALGRLADARKLFTQIPN-PN 273
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
+ +WN M+ G+ + G EA F +K +G++ S + + A +S+S
Sbjct: 274 VVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRSSLGSVLSAIASLS 323
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/247 (24%), Positives = 113/247 (45%), Gaps = 13/247 (5%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPL-RDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGH 110
LL M+++ + + LF E+ + W +I GY +++ + + M
Sbjct: 653 LLCMYMNSQRFADSETLFSELQYPKGLVVWTALISGYAQQNHHEKALQFYQHMRSDN--- 709
Query: 111 MLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ P VL+AC +++ G++VH L+F G + + SLI+ Y K ++
Sbjct: 710 ---ILPDQATFASVLRACAGMSSLQTGQEVHSLIFHTGFNMDEITCSSLIDMYAKCGDVK 766
Query: 170 DADFVFSQLKRHNTVV-WTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+ VF ++ R N+V+ W + IV + G+ + FK+M ++ I + TF VL AC
Sbjct: 767 GSLQVFHEMPRRNSVISWNSMIVGLAKNGYAEEALEIFKQMEQQSIIPDEVTFLGVLSAC 826
Query: 229 --GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
G +G + N K+ D ++ C +VD+ G+ L +AE + K +
Sbjct: 827 SHAGRVSEGRKVFDLMVNNYKLQPRVD-HLGC-MVDILGRWGFLNEAEEFINKLGCKADP 884
Query: 287 ASWNAML 293
W+ +L
Sbjct: 885 MLWSTLL 891
Score = 42.0 bits (97), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 68/144 (47%), Gaps = 22/144 (15%)
Query: 191 VNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGL 250
+ +CR H +FN E+ K +VL+A + + +H+ +KIG+
Sbjct: 34 LQHCRRIQAHNLFN-------EKPK-------AVLQAL-------STAKVIHSKSLKIGV 72
Query: 251 ESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLY 310
+ +VD+Y KC + A++ F + +KK++ +WN++L Y+ +GL+ +
Sbjct: 73 GLKGLLGNVIVDLYVKCGNVDFAQKAFSRL-EKKDVFAWNSVLSMYLDHGLFATVVQSFV 131
Query: 311 LMKASGIQIQESLINDLRIACSSI 334
M G++ E + ACS +
Sbjct: 132 CMWNHGVRPNEFTFAMVLSACSGL 155
>gi|218186186|gb|EEC68613.1| hypothetical protein OsI_36980 [Oryza sativa Indica Group]
Length = 981
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 89/301 (29%), Positives = 144/301 (47%), Gaps = 12/301 (3%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R ++ ++ +N L+ M+ + G+L A LF M RD SW MI YV + + +
Sbjct: 274 RSSLDSSVTVINALVNMYSAAGKLSDAEFLFWNMSRRDLISWNTMISSYVQNCNSTDALK 333
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
++ + L F + L AC + GK VH ++ +L RN+ + SL
Sbjct: 334 TLGQLFHTNEIPNHLTFSS-----ALGACSSPGALIDGKMVHAIVLQLSLQRNLLVGNSL 388
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNC--REG-HFHQVFNDFKEMGRERIK 215
I YGK +EDA+ VF + H+ V + I +G QVF+ + G IK
Sbjct: 389 ITMYGKCNSMEDAEKVFQSMPTHDVVSYNVLIGGYAVLEDGTKAMQVFSWIRSAG---IK 445
Query: 216 KNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAER 275
N T ++ + +D N GR +HA I++ G SDEYV L+ MY KC L +
Sbjct: 446 PNYITMINIHGSFTSSNDLHNYGRPLHAYIIRTGFLSDEYVANSLITMYAKCGNLESSTN 505
Query: 276 VFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
+F I + KNI SWNA++ + G EA K M+ +G ++ + + +C+S++
Sbjct: 506 IFNSITN-KNIVSWNAIIAANAQLGHGEEALKLFIDMQHAGNKLDRVCLAECLSSCASLA 564
Query: 336 A 336
+
Sbjct: 565 S 565
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 82/314 (26%), Positives = 145/314 (46%), Gaps = 17/314 (5%)
Query: 26 SAGAF---ELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAV 82
S GA ++++ I +++++ LL N L+ M+ C ++ A ++F MP D S+ V
Sbjct: 359 SPGALIDGKMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPTHDVVSYNV 418
Query: 83 MIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN--MELGKQVH 140
+I GY + D + + +F+ + R G + P +I + + + N G+ +H
Sbjct: 419 LIGGYAVLEDGTKAMQVFSWI--RSAG----IKPNYITMINIHGSFTSSNDLHNYGRPLH 472
Query: 141 GLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFH 200
+ + G + + SLI Y K LE + +F+ + N V W A I N + GH
Sbjct: 473 AYIIRTGFLSDEYVANSLITMYAKCGNLESSTNIFNSITNKNIVSWNAIIAANAQLGHGE 532
Query: 201 QVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGL 260
+ F +M K + + L +C + G Q+H +K GL+SD YV
Sbjct: 533 EALKLFIDMQHAGNKLDRVCLAECLSSCASLASLEE-GMQLHGLGMKSGLDSDSYVVNAA 591
Query: 261 VDMYGKCRLLRDAERVFELIVDK--KNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
+DMYGKC + + + +++ D+ + WN ++ GY + G + EA + M A G +
Sbjct: 592 MDMYGKCGKMNE---MLQMVPDQAIRPQQCWNTLISGYAKYGYFKEAEETFKQMVAMGRK 648
Query: 319 IQESLINDLRIACS 332
L ACS
Sbjct: 649 PDYVTFVALLSACS 662
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 71/316 (22%), Positives = 142/316 (44%), Gaps = 14/316 (4%)
Query: 6 LPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTA 65
+P + + ++ C ++ ++ +H+ ++ + N L+ M + G++ A
Sbjct: 141 VPCNANAFATVVSLCGSLENEVPGLQVASHVIVS-GLQNQVSVANSLITMFGNLGRVQDA 199
Query: 66 RQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLK 125
+LFD M D S MI Y +C +F++M H L A + ++
Sbjct: 200 EKLFDRMEEHDTISRNAMISMYSHQGICSKCFLVFSDMR-----HHGLRPDATTLCSLMS 254
Query: 126 ACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVV 185
C + G +H L + ++++ +L+N Y L DA+F+F + R + +
Sbjct: 255 VCASADHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSDAEFLFWNMSRRDLIS 314
Query: 186 WTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC---GGVDDDGNCGRQMH 242
W I + + + ++ N TFSS L AC G + D G+ +H
Sbjct: 315 WNTMISSYVQNCNSTDALKTLGQLFHTNEIPNHLTFSSALGACSSPGALID----GKMVH 370
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
A ++++ L+ + V L+ MYGKC + DAE+VF+ + ++ S+N ++ GY
Sbjct: 371 AIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSM-PTHDVVSYNVLIGGYAVLEDG 429
Query: 303 VEATKFLYLMKASGIQ 318
+A + ++++GI+
Sbjct: 430 TKAMQVFSWIRSAGIK 445
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 78/309 (25%), Positives = 139/309 (44%), Gaps = 15/309 (4%)
Query: 6 LPITTDMYTCLIKECTFQKDSAG-----AFELLNHIRKRVNIKPTLLFLNRLLLMHVSCG 60
+P++ L+ C + G A L H R + + LL ++ S G
Sbjct: 37 VPLSGFALASLVTACERRGRDEGIACGAAIHALTH---RAGLMGNVYIGTALLHLYGSRG 93
Query: 61 QLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWII 120
+ AR+LF EMP R+ SW ++V +E + + +M R++G + A
Sbjct: 94 IVSDARRLFWEMPERNVVSWTALMVALSSNGYLEETLRAYRQM--RREG---VPCNANAF 148
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
V+ C N G QV + G +S+ SLI +G ++DA+ +F +++
Sbjct: 149 ATVVSLCGSLENEVPGLQVASHVIVSGLQNQVSVANSLITMFGNLGRVQDAEKLFDRMEE 208
Query: 181 HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQ 240
H+T+ A I +G + F F +M ++ ++ T S++ C D + G
Sbjct: 209 HDTISRNAMISMYSHQGICSKCFLVFSDMRHHGLRPDATTLCSLMSVCASADHFSH-GSG 267
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
+H+ ++ L+S V LV+MY L DAE +F + ++++ SWN M+ Y++N
Sbjct: 268 IHSLCLRSSLDSSVTVINALVNMYSAAGKLSDAEFLF-WNMSRRDLISWNTMISSYVQNC 326
Query: 301 LYVEATKFL 309
+A K L
Sbjct: 327 NSTDALKTL 335
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 127/266 (47%), Gaps = 12/266 (4%)
Query: 72 MPLRDFNSWAVMIVGYV----DVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKAC 127
MP R ++W + G V DVA ++ L M R++G L F +V +
Sbjct: 1 MPDRTPSTWYTAVSGCVRCGRDVAAFE----LLRGM--RERGVPLSGFALASLVTACERR 54
Query: 128 VCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWT 187
+ G +H L + G N+ + +L++ YG + DA +F ++ N V WT
Sbjct: 55 GRDEGIACGAAIHALTHRAGLMGNVYIGTALLHLYGSRGIVSDARRLFWEMPERNVVSWT 114
Query: 188 AKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVK 247
A +V G+ + +++M RE + N+ F++V+ CG ++++ G Q+ ++++
Sbjct: 115 ALMVALSSNGYLEETLRAYRQMRREGVPCNANAFATVVSLCGSLENE-VPGLQVASHVIV 173
Query: 248 IGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATK 307
GL++ V L+ M+G ++DAE++F+ + + I S NAM+ Y G+ +
Sbjct: 174 SGLQNQVSVANSLITMFGNLGRVQDAEKLFDRMEEHDTI-SRNAMISMYSHQGICSKCFL 232
Query: 308 FLYLMKASGIQIQESLINDLRIACSS 333
M+ G++ + + L C+S
Sbjct: 233 VFSDMRHHGLRPDATTLCSLMSVCAS 258
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 65/260 (25%), Positives = 110/260 (42%), Gaps = 37/260 (14%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ CG L+++ +F+ + ++ SW +I + +E + LF +M + G
Sbjct: 488 NSLITMYAKCGNLESSTNIFNSITNKNIVSWNAIIAANAQLGHGEEALKLFIDM--QHAG 545
Query: 110 HMLLVFPAWIIVCV---LKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK-F 165
+ L VC+ L +C ++E G Q+HGL K G + + + ++ YGK
Sbjct: 546 NKL------DRVCLAECLSSCASLASLEEGMQLHGLGMKSGLDSDSYVVNAAMDMYGKCG 599
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
+ E V Q R W I + G+F + FK+M K + TF ++L
Sbjct: 600 KMNEMLQMVPDQAIRPQQC-WNTLISGYAKYGYFKEAEETFKQMVAMGRKPDYVTFVALL 658
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLE------SDEYVQCGL------VDMYGKCRLLRDA 273
AC HA +V G++ S V G+ VD+ G+ +A
Sbjct: 659 SACS------------HAGLVDKGIDYYNSMASSFGVSPGIKHCVCIVDLLGRLGRFAEA 706
Query: 274 ERVFELIVDKKNIASWNAML 293
ER E + N W ++L
Sbjct: 707 ERFIEEMPVLPNDLIWRSLL 726
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 66/152 (43%), Gaps = 3/152 (1%)
Query: 185 VWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG--GVDDDGNCGRQMH 242
W + R G F + M + + + +S++ AC G D+ CG +H
Sbjct: 8 TWYTAVSGCVRCGRDVAAFELLRGMRERGVPLSGFALASLVTACERRGRDEGIACGAAIH 67
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
A + GL + Y+ L+ +YG ++ DA R+F + ++N+ SW A++V NG
Sbjct: 68 ALTHRAGLMGNVYIGTALLHLYGSRGIVSDARRLF-WEMPERNVVSWTALMVALSSNGYL 126
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIACSSI 334
E + M+ G+ + + C S+
Sbjct: 127 EETLRAYRQMRREGVPCNANAFATVVSLCGSL 158
>gi|222617261|gb|EEE53393.1| hypothetical protein OsJ_36441 [Oryza sativa Japonica Group]
Length = 1151
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 84/305 (27%), Positives = 143/305 (46%), Gaps = 8/305 (2%)
Query: 14 TCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMP 73
+ L+ C D +L +++ K I + LL ++V CG ++TA +F+
Sbjct: 248 SSLLAACASLGDLQKGTQLHSYLFK-AGISSDYIMEGSLLDLYVKCGDVETALVIFNSSD 306
Query: 74 LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNM 133
+ W +M+V + + D + LF +M +P C+L+ C CT +
Sbjct: 307 RTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYP-----CILRTCTCTREI 361
Query: 134 ELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNN 193
+LG+Q+H L K G ++ ++G LI+ Y K+ LE A V LK + V WT+ I
Sbjct: 362 DLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGY 421
Query: 194 CREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESD 253
+ FKEM + I ++ +S + C G++ G Q+HA I G D
Sbjct: 422 VQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQ-GLQIHARIYVSGYSGD 480
Query: 254 EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMK 313
+ LV++Y +C +R+A FE + K I N ++ G+ ++GL+ EA K M
Sbjct: 481 VSIWNALVNLYARCGRIREAFSSFEEMELKDGITG-NGLVSGFAQSGLHEEALKVFMRMD 539
Query: 314 ASGIQ 318
SG++
Sbjct: 540 QSGVK 544
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 82/287 (28%), Positives = 139/287 (48%), Gaps = 7/287 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N ++ +++ CG A ++F +MP RD ++ +I G+ + + +F EM
Sbjct: 182 NAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSG-- 239
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
L I +L AC +++ G Q+H LFK G S + + GSL++ Y K +E
Sbjct: 240 ---LSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVE 296
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A +F+ R N V+W +V + + F F +M I+ N +T+ +L+ C
Sbjct: 297 TALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTC- 355
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ + G Q+H+ VK G ESD YV L+DMY K L A RV E++ +K++ SW
Sbjct: 356 TCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEML-KEKDVVSW 414
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+M+ GY+++ +A M+ GI + C+ I+A
Sbjct: 415 TSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINA 461
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/323 (23%), Positives = 147/323 (45%), Gaps = 10/323 (3%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
Y C+++ CT ++ E ++ + + + + L+ M+ G L+ AR++ + +
Sbjct: 348 YPCILRTCTCTRE-IDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEML 406
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI-IVCVLKACVCTM 131
+D SW MI GYV ++ + F EM K ++P I + + C
Sbjct: 407 KEKDVVSWTSMIAGYVQHECCKDALAAFKEMQK------CGIWPDNIGLASAISGCAGIN 460
Query: 132 NMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIV 191
M G Q+H ++ G S ++S+ +L+N Y + + +A F +++ + + +
Sbjct: 461 AMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEMELKDGITGNGLVS 520
Query: 192 NNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLE 251
+ G + F M + +K N +TF S L A + + G+Q+HA ++K G
Sbjct: 521 GFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQ-GKQIHARVIKTGHS 579
Query: 252 SDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYL 311
+ V L+ +YGKC DA+ F + ++N SWN ++ ++G +EA
Sbjct: 580 FETEVGNALISLYGKCGSFEDAKMEFSEM-SERNEVSWNTIITSCSQHGRGLEALDLFDQ 638
Query: 312 MKASGIQIQESLINDLRIACSSI 334
MK GI+ + + ACS +
Sbjct: 639 MKKEGIKPNDVTFIGVLAACSHV 661
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 76/276 (27%), Positives = 131/276 (47%), Gaps = 15/276 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ ++ G + AR++F+E+ RD SW M+ GY +E + L+ +M
Sbjct: 81 NLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQM------ 134
Query: 110 HMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFY---GKF 165
H V P +++ VL +C G+ +H +K G I + ++I Y G F
Sbjct: 135 HRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSF 194
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
R A+ VF + +TV + I + + GH F+EM + + T SS+L
Sbjct: 195 RL---AERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLL 251
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
AC + D G Q+H+ + K G+ SD ++ L+D+Y KC + A +F D+ N
Sbjct: 252 AACASLGDLQK-GTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFN-SSDRTN 309
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQE 321
+ WN MLV + + ++ + M+A+GI+ +
Sbjct: 310 VVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQ 345
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 114/246 (46%), Gaps = 9/246 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ ++ CG++ A F+EM L+D + ++ G+ ++E + +F M +
Sbjct: 485 NALVNLYARCGRIREAFSSFEEMELKDGITGNGLVSGFAQSGLHEEALKVFMRMDQSGVK 544
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
H + F V L A ++ GKQ+H + K G S + +LI+ YGK E
Sbjct: 545 HNVFTF-----VSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFE 599
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
DA FS++ N V W I + + G + + F +M +E IK N TF VL AC
Sbjct: 600 DAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACS 659
Query: 230 --GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
G+ ++G + ++ I D Y C ++D++G+ L A++ E + +
Sbjct: 660 HVGLVEEGLSYFKSMSDEYGIRPRPDHYA-C-VIDIFGRAGQLDRAKKFIEEMPIAADAM 717
Query: 288 SWNAML 293
W +L
Sbjct: 718 VWRTLL 723
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 65/264 (24%), Positives = 116/264 (43%), Gaps = 8/264 (3%)
Query: 72 MPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCT- 130
M R S + G++ D + ++LFA+ ++ G L F C L+AC
Sbjct: 1 MTRRGAASLGRTLAGFLAHEDPAKVLSLFADKARQHGGLGPLDF-----ACALRACRGNG 55
Query: 131 MNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKI 190
++ ++H G + + LI+ Y K + A VF +L + V W A +
Sbjct: 56 RRWQVVPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAML 115
Query: 191 VNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGL 250
+ G + +++M R + Y SSVL +C + GR +HA K G
Sbjct: 116 SGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQ-GRLIHAQGYKHGF 174
Query: 251 ESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLY 310
S+ +V ++ +Y +C R AERVF + ++ ++N ++ G+ + G A +
Sbjct: 175 CSEIFVGNAVITLYLRCGSFRLAERVF-CDMPHRDTVTFNTLISGHAQCGHGEHALEIFE 233
Query: 311 LMKASGIQIQESLINDLRIACSSI 334
M+ SG+ I+ L AC+S+
Sbjct: 234 EMQFSGLSPDCVTISSLLAACASL 257
>gi|296088738|emb|CBI38188.3| unnamed protein product [Vitis vinifera]
Length = 744
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/279 (27%), Positives = 144/279 (51%), Gaps = 9/279 (3%)
Query: 59 CGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPA- 117
CG++D AR++FD + +D SW M+ + + ++E + LF++M M+ P
Sbjct: 187 CGRVDVAREVFDGILYKDMVSWTGMVTCFAENDCFKEALKLFSQM------RMVGFKPNN 240
Query: 118 WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQ 177
+ V KAC+ ++GK VHG K ++ + +L++ Y K ++DA F +
Sbjct: 241 FTFASVFKACLGLEAFDVGKSVHGCALKSRYELDLYVGVALLDLYTKSGDIDDARRAFEE 300
Query: 178 LKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC 237
+ + + + W+ I + + F +M + + N +TF+SVL+AC + + N
Sbjct: 301 IPKKDVIPWSFMIARYAQSDQSKEAVEMFFQMRQALVLPNQFTFASVLQACATM-EGLNL 359
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYI 297
G Q+H +++KIGL SD +V L+D+Y KC + ++ +F +N +WN ++VG++
Sbjct: 360 GNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELFAE-SPHRNDVTWNTVIVGHV 418
Query: 298 RNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+ G +A + M +Q E + AC+S++A
Sbjct: 419 QLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAA 457
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 89/291 (30%), Positives = 141/291 (48%), Gaps = 7/291 (2%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L N LL M+V L A +LFDEMP R+ S+ +I GY + + E I LF +
Sbjct: 73 LFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRL-- 130
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
++GH L F + +LK V T ELG +H +FKLG N + +LI+ Y
Sbjct: 131 HREGHELNPF---VFTTILKLLVSTDCGELGWGIHACIFKLGHESNAFVGTALIDAYSVC 187
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
++ A VF + + V WT + F + F +M K N++TF+SV
Sbjct: 188 GRVDVAREVFDGILYKDMVSWTGMVTCFAENDCFKEALKLFSQMRMVGFKPNNFTFASVF 247
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
KAC G+ + + G+ +H +K E D YV L+D+Y K + DA R FE I KK+
Sbjct: 248 KACLGL-EAFDVGKSVHGCALKSRYELDLYVGVALLDLYTKSGDIDDARRAFEEI-PKKD 305
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+ W+ M+ Y ++ EA + + M+ + + + + AC+++
Sbjct: 306 VIPWSFMIARYAQSDQSKEAVEMFFQMRQALVLPNQFTFASVLQACATMEG 356
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 109/236 (46%), Gaps = 12/236 (5%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL ++ G +D AR+ F+E+P +D W+ MI Y +E + +F +M +
Sbjct: 281 LLDLYTKSGDIDDARRAFEEIPKKDVIPWSFMIARYAQSDQSKEAVEMFFQMRQA----- 335
Query: 112 LLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
LV P + VL+AC + LG Q+H + K+G ++ ++ +L++ Y K +E+
Sbjct: 336 -LVLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMEN 394
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
+ +F++ N V W IV + + G + F M R++ T+SS L+AC
Sbjct: 395 SMELFAESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACAS 454
Query: 231 VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
+ G Q+H+ VK D+ G++ LL + F ++ I
Sbjct: 455 L-AALEPGLQIHSLTVK----PDKLTFVGVLSACANAGLLDQGQAYFTSMIQDHGI 505
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 94/214 (43%), Gaps = 2/214 (0%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
L+ C+ GK +H + K G ++ L+N Y K L DA +F ++ N
Sbjct: 44 ALQDCIQKDEPSRGKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASKLFDEMPERN 103
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
T+ + I F + F + RE + N + F+++LK D G G +H
Sbjct: 104 TISFVTLIQGYAESVRFLEAIELFVRLHREGHELNPFVFTTILKLLVST-DCGELGWGIH 162
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
A I K+G ES+ +V L+D Y C + A VF+ I+ K++ SW M+ + N +
Sbjct: 163 ACIFKLGHESNAFVGTALIDAYSVCGRVDVAREVFDGIL-YKDMVSWTGMVTCFAENDCF 221
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
EA K M+ G + + AC + A
Sbjct: 222 KEALKLFSQMRMVGFKPNNFTFASVFKACLGLEA 255
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 56/107 (52%), Gaps = 5/107 (4%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
++ + + N L+ ++ CG+++ + +LF E P R+ +W +IVG+V + D ++ +
Sbjct: 369 KIGLHSDVFVSNALMDVYAKCGRMENSMELFAESPHRNDVTWNTVIVGHVQLGDGEKALR 428
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFK 145
LF M++ + + + + L+AC +E G Q+H L K
Sbjct: 429 LFLNMLEYRVQATEVTYSS-----ALRACASLAALEPGLQIHSLTVK 470
>gi|296083564|emb|CBI23556.3| unnamed protein product [Vitis vinifera]
Length = 827
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 144/281 (51%), Gaps = 11/281 (3%)
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI 119
G L +A ++FD+MP R+ +W +MI + + ++ I LF +M G+ V +
Sbjct: 197 GDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDM--ELSGY---VPDRFT 251
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC---LEDADFVFS 176
VL AC + LGKQ+H + +LG + ++ + SL++ Y K ++D+ VF
Sbjct: 252 YSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFE 311
Query: 177 QLKRHNTVVWTAKIVNNCREGHF-HQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDG 235
Q+ HN + WTA I + G + F +M I+ N ++FSSVLKACG + D
Sbjct: 312 QMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDP- 370
Query: 236 NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
G Q+++ VK+G+ S V L+ MY + + DA + F+++ +K N+ S+NA++ G
Sbjct: 371 YTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEK-NLVSYNAIVDG 429
Query: 296 YIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
Y +N EA + +GI I L +SI A
Sbjct: 430 YAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGA 470
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 81/288 (28%), Positives = 141/288 (48%), Gaps = 13/288 (4%)
Query: 52 LLLMHVSC---GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVAD-YQECITLFAEMMKRK 107
L+ M+ C G +D +R++F++MP + SW +I YV + +E I LF +M+
Sbjct: 290 LVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMIS-- 347
Query: 108 KGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166
GH + P + VLKAC + G+QV+ KLG + + SLI+ Y +
Sbjct: 348 -GH---IRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSG 403
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
+EDA F L N V + A + + + F F E+ I +++TF+S+L
Sbjct: 404 RMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLS 463
Query: 227 ACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
+ G G Q+H ++K G +S++ + L+ MY +C + A +VF + D +N+
Sbjct: 464 GAASIGAMGK-GEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMED-RNV 521
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
SW +M+ G+ ++G A + + M +G + E + ACS +
Sbjct: 522 ISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHV 569
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 81/304 (26%), Positives = 149/304 (49%), Gaps = 22/304 (7%)
Query: 7 PITTDMYTCLIKECTFQKDSAGAFELLNHIRKRV---NIKPTLLFLNRLLLMHVSCGQLD 63
P Y+ L+K C ++ F+L + +++ ++ + LN L+ ++ CG +
Sbjct: 41 PPDLTTYSILLKSCIRFRN----FQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGDTE 96
Query: 64 TARQLFDEMP-LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIV 121
TAR +F+ M RD SW+ M+ + + + + I F +M++ L +P +
Sbjct: 97 TARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLE------LGFYPNEYCFA 150
Query: 122 CVLKACVCTMNMELGKQVHGLLFKLGS-SRNISLTGSLINFYGKFRC-LEDADFVFSQLK 179
V++AC +G+ ++G + K G ++ + LI+ + K L A VF ++
Sbjct: 151 AVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMP 210
Query: 180 RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGR 239
N V WT I + G + F +M + +T+SSVL AC + G+
Sbjct: 211 ERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLA-LGK 269
Query: 240 QMHANIVKIGLESDEYVQCGLVDMYGKCRL---LRDAERVFELIVDKKNIASWNAMLVGY 296
Q+H+ ++++GL D V C LVDMY KC + D+ +VFE + + N+ SW A++ Y
Sbjct: 270 QLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQM-PEHNVMSWTAIITAY 328
Query: 297 IRNG 300
+++G
Sbjct: 329 VQSG 332
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 102/225 (45%), Gaps = 7/225 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ G+++ AR+ FD + ++ S+ ++ GY +E LF E+ G
Sbjct: 393 NSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIG 452
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
A+ +L M G+Q+HG L K G N + +LI+ Y + +E
Sbjct: 453 -----ISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIE 507
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A VF++++ N + WT+ I + G + F +M K N T+ +VL AC
Sbjct: 508 AAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACS 567
Query: 230 GVDDDGNCGRQMHANIVKIGLESD-EYVQCGLVDMYGKCRLLRDA 273
V + ++ + G+ E+ C +VD+ G+ LL +A
Sbjct: 568 HVGMISEGQKHFNSMYKEHGIVPRMEHYAC-MVDLLGRSGLLVEA 611
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 70/157 (44%), Gaps = 1/157 (0%)
Query: 177 QLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGN 236
LK N +++ G H F+ M ++ + T+S +LK+C +
Sbjct: 3 SLKNPNFEPLKNRLIRQLDVGRLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRN-FQ 61
Query: 237 CGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGY 296
G+ +H +++ GLE D V L+ +Y KC A +FE + +K+++ SW+AM+ +
Sbjct: 62 LGKLVHRKLMQSGLELDSVVLNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCF 121
Query: 297 IRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSS 333
N + +A M G E + ACS+
Sbjct: 122 ANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIRACSN 158
>gi|224119830|ref|XP_002318172.1| predicted protein [Populus trichocarpa]
gi|222858845|gb|EEE96392.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 94/297 (31%), Positives = 140/297 (47%), Gaps = 19/297 (6%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+ L+ M+ CG++ AR++FDEM RD SW MI GY + +E I LF EM R++G
Sbjct: 167 HSLITMYARCGEMGFARKVFDEMGDRDLVSWNSMISGYSKMGFTKEAIGLFMEM--REEG 224
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+V VL AC ++ LG+ V G + + N + +LI+ YGK L
Sbjct: 225 ---FEPDEMTLVSVLGACGDLGDLGLGRWVEGFVLEKKMEVNSYMGSALIDMYGKCGDLI 281
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQ---VFNDFKEMGRERIKKNSYTFSSVLK 226
A VF + + V W A I + G ++ +FN +E G + T VL
Sbjct: 282 SARRVFDSMPNKDVVTWNAIITGYAQNGASNEAIVLFNGMREAGPH---PDRVTMIEVLS 338
Query: 227 AC---GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
AC G +D G+ + + + GL+ D YV L+DMY KC L DA RVFE +
Sbjct: 339 ACSTIGALD----LGKWVETHASEKGLQHDVYVASALIDMYAKCGSLDDAVRVFESM-PH 393
Query: 284 KNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKIN 340
KN SWNAM+ +G EA M +Q + I + + + + A ++
Sbjct: 394 KNEVSWNAMISALAFHGQAQEALSLFRRMSKDNGTVQPNDITFIGVLSACVHAGLVD 450
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 89/328 (27%), Positives = 148/328 (45%), Gaps = 16/328 (4%)
Query: 10 TDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLF 69
T+ LIK+C + LL I ++ I ++ N LL + L A +F
Sbjct: 33 TEKLLSLIKQCKSKN-------LLKQIHAQMLIN-SIPKPNFLLSKIIDLKDLAYASLVF 84
Query: 70 DEMPLRDFNSWAVMIVGYVDV-ADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACV 128
+++ + ++ VM+ G Y C+ L+ ++ +P I AC
Sbjct: 85 NQLTKPNIYAFNVMLRGLATTWKKYDFCVELYYKLKSLGLKANNFTYPFLFI-----ACG 139
Query: 129 CTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTA 188
+ GK H L+FK G + + SLI Y + + A VF ++ + V W +
Sbjct: 140 NVRGLVHGKIGHCLVFKAGLDGDEYVNHSLITMYARCGEMGFARKVFDEMGDRDLVSWNS 199
Query: 189 KIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKI 248
I + G + F EM E + + T SVL ACG + D G GR + +++
Sbjct: 200 MISGYSKMGFTKEAIGLFMEMREEGFEPDEMTLVSVLGACGDLGDLG-LGRWVEGFVLEK 258
Query: 249 GLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKF 308
+E + Y+ L+DMYGKC L A RVF+ + + K++ +WNA++ GY +NG EA
Sbjct: 259 KMEVNSYMGSALIDMYGKCGDLISARRVFDSMPN-KDVVTWNAIITGYAQNGASNEAIVL 317
Query: 309 LYLMKASGIQIQESLINDLRIACSSISA 336
M+ +G + ++ ACS+I A
Sbjct: 318 FNGMREAGPHPDRVTMIEVLSACSTIGA 345
>gi|302815813|ref|XP_002989587.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
gi|300142765|gb|EFJ09463.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
Length = 736
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 85/328 (25%), Positives = 152/328 (46%), Gaps = 5/328 (1%)
Query: 12 MYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDE 71
M+ I C+ KD L I + ++ ++ L+ M+ C L+ AR+ FDE
Sbjct: 60 MFVVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDE 119
Query: 72 MPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTM 131
M + +W +I GY D++ + ++ +M+ + M A L AC
Sbjct: 120 MGKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKP--DAITFSSALYACTVVG 177
Query: 132 NMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIV 191
++ G+++ G + + + +LIN Y K LE A VF +LK + + W I
Sbjct: 178 DISQGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMIS 237
Query: 192 NNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLE 251
++G Q F+ MG K N TF +L AC ++D GR +H + + G E
Sbjct: 238 GYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQ-GRAIHRKVREDGYE 296
Query: 252 SDEYVQCGLVDMYGKC-RLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLY 310
SD + L++MY KC L +A +VFE + +++ +WN ++V Y++ G +A
Sbjct: 297 SDLVIGNVLLNMYTKCSSSLEEARQVFERM-RTRDVITWNILIVAYVQYGQAKDALDIFK 355
Query: 311 LMKASGIQIQESLINDLRIACSSISASK 338
M+ + E ++++ AC+ + A +
Sbjct: 356 QMQLENVAPNEITLSNVLSACAVLGAKR 383
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/290 (26%), Positives = 132/290 (45%), Gaps = 23/290 (7%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMM---KRKKGHM 111
M+ CG + A +F + + SW +++ + Y+E + + M+ R G M
Sbjct: 1 MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSR----NISLTGSLINFYGKFRC 167
+V + C + +++ G+ +H ++ + +R +I L +LI Y + R
Sbjct: 61 FVV--------AIGVCSSSKDLKQGQLLHAMILE---TRLLEFDIILGTALITMYARCRD 109
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFH---QVFNDFKEMGRERIKKNSYTFSSV 224
LE A F ++ + V W A I R G +++ D E +K ++ TFSS
Sbjct: 110 LELARKTFDEMGKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSA 169
Query: 225 LKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
L AC V D GR++ A V G SD VQ L++MY KC L A +VF+ + ++
Sbjct: 170 LYACTVVGDISQ-GREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRD 228
Query: 285 NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
IA WN M+ GY + G +A + M + + L AC+++
Sbjct: 229 VIA-WNTMISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNL 277
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 74/284 (26%), Positives = 124/284 (43%), Gaps = 13/284 (4%)
Query: 16 LIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQ-LDTARQLFDEMPL 74
L+ CT +D + +R+ + L+ N LL M+ C L+ ARQ+F+ M
Sbjct: 270 LLTACTNLEDLEQGRAIHRKVRED-GYESDLVIGNVLLNMYTKCSSSLEEARQVFERMRT 328
Query: 75 RDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVC-VLKACVCTMNM 133
RD +W ++IV YV ++ + +F +M V P I + VL AC
Sbjct: 329 RDVITWNILIVAYVQYGQAKDALDIFKQMQLEN------VAPNEITLSNVLSACAVLGAK 382
Query: 134 ELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNN 193
GK VH L+ ++ L SL+N Y + L+D VF+ ++ + V W+ I
Sbjct: 383 RQGKAVHALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAY 442
Query: 194 CREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--GGVDDDGNCGRQMHANIVKIGLE 251
+ GH F E+ +E + + T S L AC GG+ +G + + + GL
Sbjct: 443 AQHGHSRTGLEHFWELLQEGLAADDVTMVSTLSACSHGGMLKEGV--QTFLSMVGDHGLA 500
Query: 252 SDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
D +VD+ + L AE + + + +W ++L G
Sbjct: 501 PDYRHFLCMVDLLSRAGRLEAAENLIHDMPFLPDAVAWTSLLSG 544
>gi|242081959|ref|XP_002445748.1| hypothetical protein SORBIDRAFT_07g025050 [Sorghum bicolor]
gi|241942098|gb|EES15243.1| hypothetical protein SORBIDRAFT_07g025050 [Sorghum bicolor]
Length = 760
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/262 (28%), Positives = 123/262 (46%), Gaps = 5/262 (1%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R +P L N LL +V C +AR LFD MP RD +W +I GY + +
Sbjct: 3 RAGYRPGLFLSNNLLAAYVRCADTRSARLLFDGMPRRDVVTWNTLIAGYATQGSARSALG 62
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
F + R+ G + + VL AC + G+ HGL G +R ++ S+
Sbjct: 63 AFRD--ARRDG--AVAVDRFTYAAVLAACGGAGDWRSGRAAHGLAVVSGLARTAFVSNSV 118
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
I+ Y K R +++ F + + + V W + R G N M R ++ ++
Sbjct: 119 IDMYAKCRMIDEVRLAFDRAEERDEVSWNLLLSAYVRMGWPEVAANVLVWMHRSGVELDA 178
Query: 219 YTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE 278
+ +LKAC ++D + R +H ++K+GL+ D +V +VDMY K L +A +VF
Sbjct: 179 FALGGILKACSELEDSEDVRRMLHGCVIKVGLDLDVFVGSTMVDMYAKNGGLEEAIKVFG 238
Query: 279 LIVDKKNIASWNAMLVGYIRNG 300
I +N+ +N M+ G+ R G
Sbjct: 239 SI-PSQNVVIYNTMIAGFARLG 259
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/298 (25%), Positives = 145/298 (48%), Gaps = 14/298 (4%)
Query: 45 TLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMM 104
T N ++ M+ C +D R FD RD SW +++ YV + + + M
Sbjct: 111 TAFVSNSVIDMYAKCRMIDEVRLAFDRAEERDEVSWNLLLSAYVRMGWPEVAANVLVWMH 170
Query: 105 KRKKGHMLLVFPAWIIVCVLKACVCTMNME-LGKQVHGLLFKLGSSRNISLTGSLINFYG 163
+ + A+ + +LKAC + E + + +HG + K+G ++ + ++++ Y
Sbjct: 171 RSG-----VELDAFALGGILKACSELEDSEDVRRMLHGCVIKVGLDLDVFVGSTMVDMYA 225
Query: 164 KFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFH------QVFNDFKEMGRERIKKN 217
K LE+A VF + N V++ I R G+ + + M R RI+ +
Sbjct: 226 KNGGLEEAIKVFGSIPSQNVVIYNTMIAGFARLGNDPCPEIRMEAVRIYSNMFRRRIRPS 285
Query: 218 SYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVF 277
+TF SVL+ C + + C RQ+HA+++ G E DE++ L+++Y K RL+ D+ R F
Sbjct: 286 KFTFKSVLEVCN-LTNAVRCWRQIHAHVILFGFEDDEFIGNALINLYSKARLVDDSLRCF 344
Query: 278 ELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
K+ I +W +M+ ++RN +A ++ +G++ + ++ + AC+ +S
Sbjct: 345 HR-TPKQEIFTWTSMITAFVRNEHSDKALNLFKGLRYTGVEPDQFTMSSVMNACADLS 401
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 77/325 (23%), Positives = 144/325 (44%), Gaps = 17/325 (5%)
Query: 16 LIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLR 75
++K C+ +DS +L+ +V + + + ++ M+ G L+ A ++F +P +
Sbjct: 184 ILKACSELEDSEDVRRMLHGCVIKVGLDLDVFVGSTMVDMYAKNGGLEEAIKVFGSIPSQ 243
Query: 76 DFNSWAVMIVGYVDVAD------YQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVC 129
+ + MI G+ + + E + +++ M +R+ F + VL+ C
Sbjct: 244 NVVIYNTMIAGFARLGNDPCPEIRMEAVRIYSNMFRRRIRPSKFTFKS-----VLEVCNL 298
Query: 130 TMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAK 189
T + +Q+H + G + + +LIN Y K R ++D+ F + + WT+
Sbjct: 299 TNAVRCWRQIHAHVILFGFEDDEFIGNALINLYSKARLVDDSLRCFHRTPKQEIFTWTSM 358
Query: 190 IVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIG 249
I R H + N FK + ++ + +T SSV+ AC + C Q+H VK G
Sbjct: 359 ITAFVRNEHSDKALNLFKGLRYTGVEPDQFTMSSVMNACADLSMPIAC-EQIHCYAVKSG 417
Query: 250 LESDEYVQCG--LVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATK 307
D + CG ++MY L+ A++ FE I SW+ M++ Y +G EA
Sbjct: 418 F--DRFTLCGNSQIEMYRCTGDLKAAKKTFERIPSLDTF-SWSQMILSYAVHGHEREALL 474
Query: 308 FLYLMKASGIQIQESLINDLRIACS 332
M+ + I E + +ACS
Sbjct: 475 LFKKMRDCSVIINEFAFLAVLVACS 499
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 91/197 (46%), Gaps = 3/197 (1%)
Query: 143 LFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQV 202
+ + G + L+ +L+ Y + A +F + R + V W I +G
Sbjct: 1 MIRAGYRPGLFLSNNLLAAYVRCADTRSARLLFDGMPRRDVVTWNTLIAGYATQGSARSA 60
Query: 203 FNDFKEMGRE-RIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLV 261
F++ R+ + + +T+++VL ACGG D GR H V GL +V ++
Sbjct: 61 LGAFRDARRDGAVAVDRFTYAAVLAACGGAGD-WRSGRAAHGLAVVSGLARTAFVSNSVI 119
Query: 262 DMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQE 321
DMY KCR++ + F+ ++++ SWN +L Y+R G A L M SG+++
Sbjct: 120 DMYAKCRMIDEVRLAFDR-AEERDEVSWNLLLSAYVRMGWPEVAANVLVWMHRSGVELDA 178
Query: 322 SLINDLRIACSSISASK 338
+ + ACS + S+
Sbjct: 179 FALGGILKACSELEDSE 195
>gi|449446466|ref|XP_004140992.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g04780-like [Cucumis sativus]
Length = 638
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 82/292 (28%), Positives = 136/292 (46%), Gaps = 7/292 (2%)
Query: 40 VNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITL 99
+ +K LL N L+ M+ CG +D ARQ+FDEMP R SW MI + E + L
Sbjct: 93 MGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRSLVSWNTMIGSLTQNGEENEALDL 152
Query: 100 FAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLI 159
+M + F + I VL AC + + +H K N+ + +L+
Sbjct: 153 LLQMQREGTP-----FSEFTISSVLCACAAKCALSECQLLHAFAIKAAMDLNVFVATALL 207
Query: 160 NFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSY 219
+ Y K ++DA VF + + V W++ + + Q F++ +K + +
Sbjct: 208 DVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQF 267
Query: 220 TFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFEL 279
SSV+ AC G+ G+QM+A + K G S+ +V L+DMY KC + ++ +VF
Sbjct: 268 LMSSVICACAGLAAMIE-GKQMNALLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFR- 325
Query: 280 IVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
V+K+N+ WNAM+ G R+ +E M+ G+ + + AC
Sbjct: 326 DVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSVLSAC 377
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 110/214 (51%), Gaps = 2/214 (0%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
+LK C + GK H + +G ++ + LIN Y K ++ A VF ++ +
Sbjct: 70 ILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRS 129
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
V W I + + G ++ + +M RE + +T SSVL AC C + +H
Sbjct: 130 LVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSEC-QLLH 188
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
A +K ++ + +V L+D+Y KC L++DA VFE + D +++ +W++M GY++N +Y
Sbjct: 189 AFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPD-RSVVTWSSMAAGYVQNEMY 247
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+A +G++ + L++ + AC+ ++A
Sbjct: 248 EQALALFRKAWETGLKHDQFLMSSVICACAGLAA 281
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 100/215 (46%), Gaps = 15/215 (6%)
Query: 15 CLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL 74
C + EC +LL+ + + + LL ++ CG + A +F+ MP
Sbjct: 179 CALSEC----------QLLHAFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPD 228
Query: 75 RDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNME 134
R +W+ M GYV Y++ + LF RK L +++ V+ AC M
Sbjct: 229 RSVVTWSSMAAGYVQNEMYEQALALF-----RKAWETGLKHDQFLMSSVICACAGLAAMI 283
Query: 135 LGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNC 194
GKQ++ LL K G NI + SLI+ Y K +E++ VF +++ N V+W A I
Sbjct: 284 EGKQMNALLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLS 343
Query: 195 REGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
R +V F++M + + N TF SVL ACG
Sbjct: 344 RHARSLEVMILFEKMQQMGLSPNDVTFVSVLSACG 378
>gi|255542634|ref|XP_002512380.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548341|gb|EEF49832.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 736
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 86/276 (31%), Positives = 138/276 (50%), Gaps = 9/276 (3%)
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI 119
G LDT RQ+FDEM R+ +W +I G Y++ + LF +M L+ P ++
Sbjct: 37 GDLDTGRQVFDEMLERNVITWTAIISGLSQNEMYEDSLGLFVQM------RCGLIEPNFL 90
Query: 120 I-VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL 178
+ L AC +E G+Q+HGL++KLG N+ + +L++ Y K LEDA VF
Sbjct: 91 TYLSSLTACSGLQALEKGRQIHGLVWKLGIQSNLCIESALMDLYSKCGSLEDARRVFESA 150
Query: 179 KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCG 238
+ V T +V + G + F +M + + S+VL AC GVD G
Sbjct: 151 VELDEVSMTVILVGFTQNGFEEEAIEFFVKMVNIGTEVDPNMVSAVLGAC-GVDTSLGLG 209
Query: 239 RQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIR 298
+Q+H+ ++K L S+ +V GL++MY KC L+++ +VF + +N SWN+M+ + R
Sbjct: 210 KQIHSLVIKRSLGSNPFVGNGLINMYSKCGELQESIKVFNGLT-CRNSVSWNSMIAAFAR 268
Query: 299 NGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
+G A + M G + L ACS +
Sbjct: 269 HGDGFRALRLYEEMIQEGAVPTDLTFLSLLHACSHV 304
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 72/257 (28%), Positives = 123/257 (47%), Gaps = 9/257 (3%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
++ I+ L + L+ ++ CG L+ AR++F+ D S V++VG+ +E I
Sbjct: 117 KLGIQSNLCIESALMDLYSKCGSLEDARRVFESAVELDEVSMTVILVGFTQNGFEEEAIE 176
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
F +M+ ++ ++ VL AC ++ LGKQ+H L+ K N + L
Sbjct: 177 FFVKMV-----NIGTEVDPNMVSAVLGACGVDTSLGLGKQIHSLVIKRSLGSNPFVGNGL 231
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
IN Y K L+++ VF+ L N+V W + I R G + ++EM +E
Sbjct: 232 INMYSKCGELQESIKVFNGLTCRNSVSWNSMIAAFARHGDGFRALRLYEEMIQEGAVPTD 291
Query: 219 YTFSSVLKACG--GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERV 276
TF S+L AC G+ D G + + I ++ Y C +VDM G+ LL +A+ +
Sbjct: 292 LTFLSLLHACSHVGLVDKGMKFLKSMTKVYGISPRAEHYA-C-VVDMLGRAGLLNEAKSL 349
Query: 277 FELIVDKKNIASWNAML 293
E + K ++ W A+L
Sbjct: 350 IERLSIKPDVLIWQALL 366
>gi|359497798|ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like, partial [Vitis vinifera]
Length = 809
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 144/281 (51%), Gaps = 11/281 (3%)
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI 119
G L +A ++FD+MP R+ +W +MI + + ++ I LF +M G+ V +
Sbjct: 179 GDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDM--ELSGY---VPDRFT 233
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC---LEDADFVFS 176
VL AC + LGKQ+H + +LG + ++ + SL++ Y K ++D+ VF
Sbjct: 234 YSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFE 293
Query: 177 QLKRHNTVVWTAKIVNNCREGHF-HQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDG 235
Q+ HN + WTA I + G + F +M I+ N ++FSSVLKACG + D
Sbjct: 294 QMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDP- 352
Query: 236 NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
G Q+++ VK+G+ S V L+ MY + + DA + F+++ +K N+ S+NA++ G
Sbjct: 353 YTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEK-NLVSYNAIVDG 411
Query: 296 YIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
Y +N EA + +GI I L +SI A
Sbjct: 412 YAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGA 452
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 81/288 (28%), Positives = 141/288 (48%), Gaps = 13/288 (4%)
Query: 52 LLLMHVSC---GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVAD-YQECITLFAEMMKRK 107
L+ M+ C G +D +R++F++MP + SW +I YV + +E I LF +M+
Sbjct: 272 LVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMIS-- 329
Query: 108 KGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166
GH + P + VLKAC + G+QV+ KLG + + SLI+ Y +
Sbjct: 330 -GH---IRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSG 385
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
+EDA F L N V + A + + + F F E+ I +++TF+S+L
Sbjct: 386 RMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLS 445
Query: 227 ACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
+ G G Q+H ++K G +S++ + L+ MY +C + A +VF + D +N+
Sbjct: 446 GAASIGAMGK-GEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMED-RNV 503
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
SW +M+ G+ ++G A + + M +G + E + ACS +
Sbjct: 504 ISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHV 551
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 81/304 (26%), Positives = 149/304 (49%), Gaps = 22/304 (7%)
Query: 7 PITTDMYTCLIKECTFQKDSAGAFELLNHIRKRV---NIKPTLLFLNRLLLMHVSCGQLD 63
P Y+ L+K C ++ F+L + +++ ++ + LN L+ ++ CG +
Sbjct: 23 PPDLTTYSILLKSCIRFRN----FQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGDTE 78
Query: 64 TARQLFDEMP-LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIV 121
TAR +F+ M RD SW+ M+ + + + + I F +M++ L +P +
Sbjct: 79 TARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLE------LGFYPNEYCFA 132
Query: 122 CVLKACVCTMNMELGKQVHGLLFKLGS-SRNISLTGSLINFYGKFRC-LEDADFVFSQLK 179
V++AC +G+ ++G + K G ++ + LI+ + K L A VF ++
Sbjct: 133 AVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMP 192
Query: 180 RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGR 239
N V WT I + G + F +M + +T+SSVL AC + G+
Sbjct: 193 ERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLA-LGK 251
Query: 240 QMHANIVKIGLESDEYVQCGLVDMYGKCRL---LRDAERVFELIVDKKNIASWNAMLVGY 296
Q+H+ ++++GL D V C LVDMY KC + D+ +VFE + + N+ SW A++ Y
Sbjct: 252 QLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQM-PEHNVMSWTAIITAY 310
Query: 297 IRNG 300
+++G
Sbjct: 311 VQSG 314
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 102/225 (45%), Gaps = 7/225 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ G+++ AR+ FD + ++ S+ ++ GY +E LF E+ G
Sbjct: 375 NSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIG 434
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
A+ +L M G+Q+HG L K G N + +LI+ Y + +E
Sbjct: 435 -----ISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIE 489
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A VF++++ N + WT+ I + G + F +M K N T+ +VL AC
Sbjct: 490 AAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACS 549
Query: 230 GVDDDGNCGRQMHANIVKIGLESD-EYVQCGLVDMYGKCRLLRDA 273
V + ++ + G+ E+ C +VD+ G+ LL +A
Sbjct: 550 HVGMISEGQKHFNSMYKEHGIVPRMEHYAC-MVDLLGRSGLLVEA 593
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 64/137 (46%), Gaps = 1/137 (0%)
Query: 197 GHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYV 256
G H F+ M ++ + T+S +LK+C + G+ +H +++ GLE D V
Sbjct: 5 GRLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRN-FQLGKLVHRKLMQSGLELDSVV 63
Query: 257 QCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASG 316
L+ +Y KC A +FE + +K+++ SW+AM+ + N + +A M G
Sbjct: 64 LNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELG 123
Query: 317 IQIQESLINDLRIACSS 333
E + ACS+
Sbjct: 124 FYPNEYCFAAVIRACSN 140
>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
Length = 694
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/297 (25%), Positives = 142/297 (47%), Gaps = 11/297 (3%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL--RDFNSWAVMIVGYVDVADYQEC 96
R+ + N L+ ++ C +L +AR +F+ +PL R SW ++ Y + E
Sbjct: 147 RLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEA 206
Query: 97 ITLFAEMMKRKKGHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLT 155
+ +F++M K + V P W+ +V VL A C +++ G+ +H + K+G L
Sbjct: 207 LEIFSQMRK------MDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLL 260
Query: 156 GSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIK 215
SL Y K + A +F ++K N ++W A I + G+ + + F EM + ++
Sbjct: 261 ISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVR 320
Query: 216 KNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAER 275
++ + +S + AC V R M+ + + D ++ L+DM+ KC + A
Sbjct: 321 PDTISITSAISACAQVGSLEQ-ARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARL 379
Query: 276 VFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
VF+ +D +++ W+AM+VGY +G EA M+ G+ + L +AC+
Sbjct: 380 VFDRTLD-RDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACN 435
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 87/317 (27%), Positives = 145/317 (45%), Gaps = 12/317 (3%)
Query: 25 DSAGAFELLNHIRKRV---NIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWA 81
DSA L I R+ ++ + + +L+ S G + ARQ+FD++P W
Sbjct: 29 DSATHKAQLKQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWN 88
Query: 82 VMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHG 141
+I GY +Q+ + +++ M + FP +LKAC ++++G+ VH
Sbjct: 89 AIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPH-----LLKACSGLSHLQMGRFVHA 143
Query: 142 LLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFS--QLKRHNTVVWTAKIVNNCREGHF 199
+F+LG ++ + LI Y K R L A VF L V WTA + + G
Sbjct: 144 QVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEP 203
Query: 200 HQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCG 259
+ F +M + +K + SVL A + D GR +HA++VK+GLE + +
Sbjct: 204 MEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQ-GRSIHASVVKMGLEIEPDLLIS 262
Query: 260 LVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQI 319
L MY KC + A+ +F+ + N+ WNAM+ GY +NG EA + M ++
Sbjct: 263 LNTMYAKCGQVATAKILFDKM-KSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRP 321
Query: 320 QESLINDLRIACSSISA 336
I AC+ + +
Sbjct: 322 DTISITSAISACAQVGS 338
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 69/261 (26%), Positives = 120/261 (45%), Gaps = 14/261 (5%)
Query: 36 IRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQE 95
++ + I+P LL L M+ CGQ+ TA+ LFD+M + W MI GY +E
Sbjct: 249 VKMGLEIEPDLLI--SLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYARE 306
Query: 96 CITLFAEMMKRKKGHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISL 154
I +F EM+ + V P I I + AC ++E + ++ + + ++ +
Sbjct: 307 AIDMFHEMINKD------VRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFI 360
Query: 155 TGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERI 214
+ +LI+ + K +E A VF + + VVW+A IV G + + ++ M R +
Sbjct: 361 SSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGV 420
Query: 215 KKNSYTFSSVLKAC--GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRD 272
N TF +L AC G+ +G A+ KI + Y C ++D+ G+ L
Sbjct: 421 HPNDVTFLGLLMACNHSGMVREGWWFFNRMAD-HKINPQQQHYA-C-VIDLLGRAGHLDQ 477
Query: 273 AERVFELIVDKKNIASWNAML 293
A V + + + + W A+L
Sbjct: 478 AYEVIKCMPVQPGVTVWGALL 498
>gi|15218216|ref|NP_173004.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75191104|sp|Q9M9E2.1|PPR45_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g15510, chloroplastic; Flags: Precursor
gi|8072389|gb|AAF71977.1|AC013453_2 Hypothetical protein [Arabidopsis thaliana]
gi|300825685|gb|ADK35876.1| chloroplast vanilla cream 1 [Arabidopsis thaliana]
gi|332191210|gb|AEE29331.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 866
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 93/311 (29%), Positives = 153/311 (49%), Gaps = 12/311 (3%)
Query: 8 ITTDMYT--CLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTA 65
+ D+YT C+++ C D A E+ H+ R + + +N L+ M+V CG + +A
Sbjct: 192 VKPDVYTFPCVLRTCGGIPDLARGKEVHVHV-VRYGYELDIDVVNALITMYVKCGDVKSA 250
Query: 66 RQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI-IVCVL 124
R LFD MP RD SW MI GY + E + LF M +G L V P + + V+
Sbjct: 251 RLLFDRMPRRDIISWNAMISGYFENGMCHEGLELFFAM----RG--LSVDPDLMTLTSVI 304
Query: 125 KACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTV 184
AC + LG+ +H + G + +IS+ SL Y +A+ +FS+++R + V
Sbjct: 305 SACELLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIV 364
Query: 185 VWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHAN 244
WT I + + ++ M ++ +K + T ++VL AC + D + G ++H
Sbjct: 365 SWTTMISGYEYNFLPDKAIDTYRMMDQDSVKPDEITVAAVLSACATL-GDLDTGVELHKL 423
Query: 245 IVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVE 304
+K L S V L++MY KC+ + A +F I +KN+ SW +++ G N E
Sbjct: 424 AIKARLISYVIVANNLINMYSKCKCIDKALDIFHNI-PRKNVISWTSIIAGLRLNNRCFE 482
Query: 305 ATKFLYLMKAS 315
A FL MK +
Sbjct: 483 ALIFLRQMKMT 493
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 84/338 (24%), Positives = 151/338 (44%), Gaps = 15/338 (4%)
Query: 1 MDNLCLPITTDMYTCLIKECTF---QKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHV 57
M L + + D++ L++ C + Q++ + + + + ++ N L M V
Sbjct: 85 MQELRVAVDEDVFVALVRLCEWKRAQEEGSKVYSIALSSMSSLGVE----LGNAFLAMFV 140
Query: 58 SCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM-LLVFP 116
G L A +F +M R+ SW V++ GY + E + L+ M+ + FP
Sbjct: 141 RFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLWVGGVKPDVYTFP 200
Query: 117 AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFS 176
CVL+ C ++ GK+VH + + G +I + +LI Y K ++ A +F
Sbjct: 201 -----CVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFD 255
Query: 177 QLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGN 236
++ R + + W A I G H+ F M + + T +SV+ AC + D
Sbjct: 256 RMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISACELLGDR-R 314
Query: 237 CGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGY 296
GR +HA ++ G D V L MY R+AE++F + ++K+I SW M+ GY
Sbjct: 315 LGRDIHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRM-ERKDIVSWTTMISGY 373
Query: 297 IRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
N L +A +M ++ E + + AC+++
Sbjct: 374 EYNFLPDKAIDTYRMMDQDSVKPDEITVAAVLSACATL 411
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 111/222 (50%), Gaps = 9/222 (4%)
Query: 119 IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL 178
+ V +++ C E G +V+ + SS + L + + + +F L DA +VF ++
Sbjct: 96 VFVALVRLCEWKRAQEEGSKVYSIALSSMSSLGVELGNAFLAMFVRFGNLVDAWYVFGKM 155
Query: 179 KRHNTVVWTAKIVNNCREGHFHQVFNDFKEM-GRERIKKNSYTFSSVLKACGGVDDDGNC 237
N W + ++G+F + + M +K + YTF VL+ CGG+ D
Sbjct: 156 SERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLWVGGVKPDVYTFPCVLRTCGGIPDLAR- 214
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYI 297
G+++H ++V+ G E D V L+ MY KC ++ A +F+ + +++I SWNAM+ GY
Sbjct: 215 GKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRM-PRRDIISWNAMISGYF 273
Query: 298 RNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKI 339
NG+ E + + M+ G+ + DL S ISA ++
Sbjct: 274 ENGMCHEGLELFFAMR--GLSVDP----DLMTLTSVISACEL 309
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 77/289 (26%), Positives = 125/289 (43%), Gaps = 21/289 (7%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L M+++ G A +LF M +D SW MI GY + I + MM +
Sbjct: 336 NSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTMISGYEYNFLPDKAIDTY-RMMDQDS- 393
Query: 110 HMLLVFPAWIIVC-VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
V P I V VL AC +++ G ++H L K + + +LIN Y K +C+
Sbjct: 394 ----VKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISYVIVANNLINMYSKCKCI 449
Query: 169 EDADFVFSQLKRHNTVVWTAKIV-----NNCREGHFHQVFNDFKEMGRERIKKNSYTFSS 223
+ A +F + R N + WT+ I N C E +F +M + +
Sbjct: 450 DKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEA---LIFLRQMKMTLQPNAITLTAALA 506
Query: 224 VLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
G + CG+++HA++++ G+ D+++ L+DMY +C + A F K
Sbjct: 507 ACARIGAL----MCGKEIHAHVLRTGVGLDDFLPNALLDMYVRCGRMNTAWSQFN--SQK 560
Query: 284 KNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
K++ SWN +L GY G + M S ++ E L CS
Sbjct: 561 KDVTSWNILLTGYSERGQGSMVVELFDRMVKSRVRPDEITFISLLCGCS 609
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 49/248 (19%), Positives = 100/248 (40%), Gaps = 8/248 (3%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
++ N L+ M+ C +D A +F +P ++ SW +I G E + +M
Sbjct: 433 VIVANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEALIFLRQMKM 492
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
+ + + + A + A +C GK++H + + G + L +L++ Y +
Sbjct: 493 TLQPNAITLTAALAACARIGALMC------GKEIHAHVLRTGVGLDDFLPNALLDMYVRC 546
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
+ A F+ K+ + W + G V F M + R++ + TF S+L
Sbjct: 547 GRMNTAWSQFNSQKK-DVTSWNILLTGYSERGQGSMVVELFDRMVKSRVRPDEITFISLL 605
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
C G + + G+ + +VD+ G+ L++A + + + +
Sbjct: 606 CGCSK-SQMVRQGLMYFSKMEDYGVTPNLKHYACVVDLLGRAGELQEAHKFIQKMPVTPD 664
Query: 286 IASWNAML 293
A W A+L
Sbjct: 665 PAVWGALL 672
>gi|297722687|ref|NP_001173707.1| Os03g0840400 [Oryza sativa Japonica Group]
gi|255675038|dbj|BAH92435.1| Os03g0840400 [Oryza sativa Japonica Group]
Length = 1632
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/262 (30%), Positives = 124/262 (47%), Gaps = 6/262 (2%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R +P L N LL ++ CG + AR LFD MP RD SW +I GY + + +
Sbjct: 3 RAAYRPGLFLRNNLLALYCRCGDMRHARLLFDGMPRRDAVSWNTLIAGYSGLGSCRLALD 62
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
F + G F A L +C + G+ VHGL G +R LT S+
Sbjct: 63 AFRDARASGDGVDRFTFAA-----ALASCARVGDWRDGRVVHGLAVVSGLARTAFLTNSV 117
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
I+ Y K +++ +F + + W + R G N M R +K +S
Sbjct: 118 IDMYAKCGMIDEVRLLFDRAEERGEASWNLLLSAYVRMGWPEVAVNVLVWMHRSGVKLDS 177
Query: 219 YTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE 278
+ +LKAC + D + R +H+ +VK+GL+ D +V +VDMY K L +A +VF+
Sbjct: 178 FALGGILKACSELGDSEDVRRMLHSCVVKVGLDLDVFVGSAMVDMYAKNGGLEEAIKVFD 237
Query: 279 LIVDKKNIASWNAMLVGYIRNG 300
I + +N+ +NAM+ G+ R G
Sbjct: 238 CIPN-QNVVVYNAMIAGFARLG 258
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 85/325 (26%), Positives = 153/325 (47%), Gaps = 17/325 (5%)
Query: 16 LIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLR 75
++K C+ DS +L+ +V + + + ++ M+ G L+ A ++FD +P +
Sbjct: 183 ILKACSELGDSEDVRRMLHSCVVKVGLDLDVFVGSAMVDMYAKNGGLEEAIKVFDCIPNQ 242
Query: 76 DFNSWAVMIVGYVDVADYQ------ECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVC 129
+ + MI G+ + + E +TLF+ M+K++ F + VL+ C
Sbjct: 243 NVVVYNAMIAGFARLGNDPCPEIRIEAVTLFSNMLKKRIKPSKFTFKS-----VLEVCNL 297
Query: 130 TMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAK 189
T + G+Q+H + G + + LIN Y K RC+ D+ F + + +WT+
Sbjct: 298 TNAVRCGRQIHAHVILSGLQGDEFIASVLINLYSKARCVNDSLRCFDMTVKEDVFIWTSM 357
Query: 190 IVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIG 249
I + HF + F+E+ R + +T SSV+ AC + C +Q+H + VK G
Sbjct: 358 ITAFVQNEHFEKALYLFRELLYTRKGTDQFTISSVMSACAALSVPTTC-KQIHCHAVKTG 416
Query: 250 LESDEYVQCG--LVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATK 307
L D++ G + MY L+ +++ FE I + SW+AM++ Y +G +A +
Sbjct: 417 L--DQFTVSGNSQIAMYRNIGDLKASKQTFEQI-SCLDTFSWSAMILSYAVHGYESKALE 473
Query: 308 FLYLMKASGIQIQESLINDLRIACS 332
MK G+ + ES IACS
Sbjct: 474 LFEKMKNLGVMMNESASLAALIACS 498
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 83/185 (44%), Gaps = 2/185 (1%)
Query: 154 LTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRER 213
L +L+ Y + + A +F + R + V W I G + F++
Sbjct: 12 LRNNLLALYCRCGDMRHARLLFDGMPRRDAVSWNTLIAGYSGLGSCRLALDAFRDARASG 71
Query: 214 IKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDA 273
+ +TF++ L +C V D GR +H V GL ++ ++DMY KC ++ +
Sbjct: 72 DGVDRFTFAAALASCARVGD-WRDGRVVHGLAVVSGLARTAFLTNSVIDMYAKCGMIDEV 130
Query: 274 ERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSS 333
+F+ +++ ASWN +L Y+R G A L M SG+++ + + ACS
Sbjct: 131 RLLFDR-AEERGEASWNLLLSAYVRMGWPEVAVNVLVWMHRSGVKLDSFALGGILKACSE 189
Query: 334 ISASK 338
+ S+
Sbjct: 190 LGDSE 194
>gi|326506094|dbj|BAJ91286.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 625
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 85/264 (32%), Positives = 135/264 (51%), Gaps = 16/264 (6%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
++ G ++ A ++FD MPLRD SW V++ V + C+ F M V
Sbjct: 168 LYAELGLMEDAGKVFDCMPLRDLMSWNVLLDCGVRSGEAGSCMKEFLSMTGCG------V 221
Query: 115 FPAWIIVCVLKACVCTMNMEL-GKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADF 173
P + + ++ L QVH ++ K G +++ L SL++ YG+ ++ A
Sbjct: 222 QPDEFTFATVLNGLAELSAGLEAMQVHSIILKSGYLKDLFLCNSLLDLYGRCGYIDLAKK 281
Query: 174 VFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDD 233
+F + + V WTA I G+ F+ F++M + + NS+TF S++ +C V+D
Sbjct: 282 LFDAMLEKDVVSWTAVISGLAACGYQADAFDIFRQMLKAAMLPNSFTFGSIVSSCADVND 341
Query: 234 DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
G+ GRQ HA +VK GLE + VDMY KC + DA R+FE I+ +++I SWNAM+
Sbjct: 342 LGS-GRQCHALVVKHGLELVPIIASCFVDMYSKCAKMDDAIRMFE-IMPQRDIISWNAMI 399
Query: 294 VGYIRNG-------LYVEATKFLY 310
G +NG LY E T+ Y
Sbjct: 400 CGLAQNGQSARSLELYDEMTQLHY 423
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 73/277 (26%), Positives = 126/277 (45%), Gaps = 13/277 (4%)
Query: 43 KPTLLFLNRLLLMHVSC---GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITL 99
PTL+ N +L + S G LD A L D MP RD SW I G ++ +
Sbjct: 54 SPTLVSYNTVLSGYASSSTPGLLDAALCLLDAMPERDSWSWNTAISGLARAGRTRDALRR 113
Query: 100 FAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLI 159
F +M H LV P ++ C C +++ +QVH K G + + I
Sbjct: 114 FLQMT-----HTALV-PDAFTYSIVSPC-CGVDLGSARQVHARAVKAGVFADACVGTGFI 166
Query: 160 NFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSY 219
Y + +EDA VF + + + W + R G +F M ++ + +
Sbjct: 167 KLYAELGLMEDAGKVFDCMPLRDLMSWNVLLDCGVRSGEAGSCMKEFLSMTGCGVQPDEF 226
Query: 220 TFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFEL 279
TF++VL + G Q+H+ I+K G D ++ L+D+YG+C + A+++F+
Sbjct: 227 TFATVLNGLAEL-SAGLEAMQVHSIILKSGYLKDLFLCNSLLDLYGRCGYIDLAKKLFDA 285
Query: 280 IVDKKNIASWNAMLVGYIRNGLYVEATK-FLYLMKAS 315
+++ K++ SW A++ G G +A F ++KA+
Sbjct: 286 MLE-KDVVSWTAVISGLAACGYQADAFDIFRQMLKAA 321
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 119/261 (45%), Gaps = 19/261 (7%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L N LL ++ CG +D A++LFD M +D SW +I G + +F +M+K
Sbjct: 260 LFLCNSLLDLYGRCGYIDLAKKLFDAMLEKDVVSWTAVISGLAACGYQADAFDIFRQMLK 319
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
++ ++ ++ +C ++ G+Q H L+ K G + ++ Y K
Sbjct: 320 AA-----MLPNSFTFGSIVSSCADVNDLGSGRQCHALVVKHGLELVPIIASCFVDMYSKC 374
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKI---VNNCREGHFHQVFNDFKEMGRERIKKNSYTFS 222
++DA +F + + + + W A I N + +++++ ++ E + NS TF
Sbjct: 375 AKMDDAIRMFEIMPQRDIISWNAMICGLAQNGQSARSLELYDEMTQLHYESVTPNSVTFV 434
Query: 223 SVLKAC---GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFEL 279
VL AC G V + QM N I S+ Y C L+D++ + L +AE +
Sbjct: 435 GVLSACSHAGAVQKGCSYFTQM-VNDFHIEPISEHYT-C-LIDLFARAGWLDEAEEIISN 491
Query: 280 IVDKKNIASWNAMLVGYIRNG 300
+ K +A+++G + NG
Sbjct: 492 VPFKH-----DAVILGILLNG 507
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 65/144 (45%), Gaps = 4/144 (2%)
Query: 178 LKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC 237
+ ++ W I R G F +M + +++T+S V CG D
Sbjct: 86 MPERDSWSWNTAISGLARAGRTRDALRRFLQMTHTALVPDAFTYSIVSPCCG---VDLGS 142
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYI 297
RQ+HA VK G+ +D V G + +Y + L+ DA +VF+ + +++ SWN +L +
Sbjct: 143 ARQVHARAVKAGVFADACVGTGFIKLYAELGLMEDAGKVFDCM-PLRDLMSWNVLLDCGV 201
Query: 298 RNGLYVEATKFLYLMKASGIQIQE 321
R+G K M G+Q E
Sbjct: 202 RSGEAGSCMKEFLSMTGCGVQPDE 225
>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
Length = 704
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 84/282 (29%), Positives = 141/282 (50%), Gaps = 14/282 (4%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ CG + AR +FD M R SW MI GYV D + + +F +M+
Sbjct: 172 LVDMYSKCGSVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEG---- 227
Query: 112 LLVFPAWIIVC-VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
V P + V L AC ++E GK VH L+ +L ++S+ SLI+ Y K + ++
Sbjct: 228 --VQPTNVTVMGALHACADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDI 285
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
A +F L+ V W A I+ + G ++ N F EM IK +S+T SV+ A
Sbjct: 286 AADIFKNLRNKTLVSWNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAE 345
Query: 231 VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWN 290
+ + +H +++ L+ + +V LVDMY KC + A ++F+++ + +++ +WN
Sbjct: 346 LSIPRQA-KWIHGLVIRRFLDKNVFVMTALVDMYAKCGAIHTARKLFDMM-NARHVITWN 403
Query: 291 AMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
AM+ GY +GL + + MK I+ ND+ C+
Sbjct: 404 AMIDGYGTHGLGKTSVELFKEMKKGTIK-----PNDITFLCA 440
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 76/274 (27%), Positives = 130/274 (47%), Gaps = 9/274 (3%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L + ++ M+ C Q++ A +FD MP RD W MI GY + + L M
Sbjct: 65 LFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVLRM-- 122
Query: 106 RKKGHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
++GH P I IV +L A T + +G VHG + + G ++++ +L++ Y K
Sbjct: 123 SEEGHR----PDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSK 178
Query: 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
+ A +F + V W + I + G F++M E ++ + T
Sbjct: 179 CGSVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGA 238
Query: 225 LKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
L AC + D G+ +H + ++ L+SD V L+ MY KC+ + A +F+ + + K
Sbjct: 239 LHACADLGDLER-GKFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRN-K 296
Query: 285 NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
+ SWNAM++GY +NG EA M++ I+
Sbjct: 297 TLVSWNAMILGYAQNGCVNEALNAFCEMQSRNIK 330
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 59/111 (53%), Gaps = 2/111 (1%)
Query: 206 FKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYG 265
F M + ++ Y F+ +LK CG + D G+++H +++ G + + G+V+MY
Sbjct: 18 FSRMKHDSVRPVVYNFTYLLKLCGD-NSDLKRGKEIHGSVITSGFSWNLFAMTGVVNMYA 76
Query: 266 KCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASG 316
KCR + DA +F+ + ++++ WN M+ GY +NG A + M G
Sbjct: 77 KCRQINDAYNMFDRM-PERDLVCWNTMISGYAQNGFAKVALMLVLRMSEEG 126
Score = 44.3 bits (103), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 7/92 (7%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
+ + L+ M+ CG + TAR+LFD M R +W MI GY + + LF EM
Sbjct: 368 VFVMTALVDMYAKCGAIHTARKLFDMMNARHVITWNAMIDGYGTHGLGKTSVELFKEM-- 425
Query: 106 RKKGHMLLVFPAWI-IVCVLKACVCTMNMELG 136
KKG + P I +C L AC + +E G
Sbjct: 426 -KKG---TIKPNDITFLCALSACSHSGLVEEG 453
>gi|255575102|ref|XP_002528456.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223532132|gb|EEF33939.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 664
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 82/282 (29%), Positives = 136/282 (48%), Gaps = 10/282 (3%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
+ + +L L+ M+ CG ++A +F+ MP D + +I Y + D +
Sbjct: 343 KADFDSDILIGTSLVSMYAKCGLFNSALTVFNRMPCEDIVTCNALINEYSQIGDPYHAME 402
Query: 99 LFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGS 157
+F + + + P + +VC+L C+ ++E G +HGL+ K G + ++ S
Sbjct: 403 VFHVVQISE------ILPDSRTMVCLLSVCILLHDLEQGSCIHGLIIKFGFDSHCNVKNS 456
Query: 158 LINFYGKFRCLEDADFVFSQLK-RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKK 216
LI+ Y K L +A+F+F + + + V W A I H + F+ F +M E +
Sbjct: 457 LIDMYAKCGSLANAEFLFKRTEFTKDEVSWNALIAGYVHNEHAKEAFSLFCQMKLEHFQP 516
Query: 217 NSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERV 276
N TF SV A + G +HA I+++G +S+ V L+DMY KC L ++E +
Sbjct: 517 NLVTFVSVFPAVARLSALKE-GMALHACIMRMGFQSNVLVGNCLIDMYAKCGQLHNSEHL 575
Query: 277 FELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
F + KN SWN ML GY +G A + LM+ S IQ
Sbjct: 576 FHEM-KNKNAVSWNVMLAGYAVHGQGYHAIELFSLMQKSHIQ 616
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 87/317 (27%), Positives = 141/317 (44%), Gaps = 11/317 (3%)
Query: 24 KDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVM 83
+DS E+ R++ I + ++ M+ CG LD A+QLF + ++D +W+ +
Sbjct: 228 RDSGRGKEICEFARQQ-GIDSDVSITTAMMTMYAKCGNLDKAKQLFQGLKVKDLVAWSAI 286
Query: 84 IVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLL 143
I V ++ ++LF +M L ++ VL AC M++ LGK VH
Sbjct: 287 IDALVQSRYAEDALSLFRDMQND-----FLKANNVTLLSVLPACADLMSLRLGKSVHCYA 341
Query: 144 FKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVF 203
K +I + SL++ Y K A VF+++ + V A I + G +
Sbjct: 342 IKADFDSDILIGTSLVSMYAKCGLFNSALTVFNRMPCEDIVTCNALINEYSQIGDPYHAM 401
Query: 204 NDFKEMGRERIKKNSYTFSSVLKACGGVDD--DGNCGRQMHANIVKIGLESDEYVQCGLV 261
F + I +S T +L C + D G+C +H I+K G +S V+ L+
Sbjct: 402 EVFHVVQISEILPDSRTMVCLLSVCILLHDLEQGSC---IHGLIIKFGFDSHCNVKNSLI 458
Query: 262 DMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQE 321
DMY KC L +AE +F+ K+ SWNA++ GY+ N EA MK Q
Sbjct: 459 DMYAKCGSLANAEFLFKRTEFTKDEVSWNALIAGYVHNEHAKEAFSLFCQMKLEHFQPNL 518
Query: 322 SLINDLRIACSSISASK 338
+ A + +SA K
Sbjct: 519 VTFVSVFPAVARLSALK 535
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 74/285 (25%), Positives = 126/285 (44%), Gaps = 12/285 (4%)
Query: 47 LFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR 106
+F N L+ M+ CG + A Q+F+ M + SW M+ GY + E + LF M K
Sbjct: 149 VFSNGLIDMYSKCGDIYVACQVFELMQHTNDISWRTMMAGYAHNECFFEVLDLFDYMKKN 208
Query: 107 KKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166
+ L A + GK++ + G ++S+T +++ Y K
Sbjct: 209 N-----FRLNKVSVASALLAAADVRDSGRGKEICEFARQQGIDSDVSITTAMMTMYAKCG 263
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
L+ A +F LK + V W+A I + + + F++M + +K N+ T SVL
Sbjct: 264 NLDKAKQLFQGLKVKDLVAWSAIIDALVQSRYAEDALSLFRDMQNDFLKANNVTLLSVLP 323
Query: 227 ACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
AC + G+ +H +K +SD + LV MY KC L A VF + ++I
Sbjct: 324 ACADL-MSLRLGKSVHCYAIKADFDSDILIGTSLVSMYAKCGLFNSALTVFNRM-PCEDI 381
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
+ NA++ Y + G A + ++ +QI E L + + C
Sbjct: 382 VTCNALINEYSQIGDPYHAMEVFHV-----VQISEILPDSRTMVC 421
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 84/189 (44%), Gaps = 8/189 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPL-RDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
N L+ M+ CG L A LF +D SW +I GYV +E +LF +M
Sbjct: 455 NSLIDMYAKCGSLANAEFLFKRTEFTKDEVSWNALIAGYVHNEHAKEAFSLFCQMKLEHF 514
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
L+ F V V A ++ G +H + ++G N+ + LI+ Y K L
Sbjct: 515 QPNLVTF-----VSVFPAVARLSALKEGMALHACIMRMGFQSNVLVGNCLIDMYAKCGQL 569
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+++ +F ++K N V W + G + F M + I+ +S +F SVL AC
Sbjct: 570 HNSEHLFHEMKNKNAVSWNVMLAGYAVHGQGYHAIELFSLMQKSHIQADSLSFLSVLSAC 629
Query: 229 --GGVDDDG 235
G+ D+G
Sbjct: 630 RHSGLIDEG 638
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 91/200 (45%), Gaps = 6/200 (3%)
Query: 123 VLKACVCTMNMELGKQVH-GLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH 181
VLKAC + + G +H G++FK G ++ + +L+N Y K + A VF ++ +
Sbjct: 20 VLKACTGGLEFKEGILIHRGIVFK-GLESDVFVGTALVNMYSKMGDPQLAKGVFDKMPKR 78
Query: 182 NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQM 241
+ V W A I + K M + + T +++ A + D C R +
Sbjct: 79 DVVTWNAMIFGLSHSVAPQEALKLVKSMQLAGQEPDFVTIVNLVPAVSRLADIDAC-RSL 137
Query: 242 HANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGL 301
H +++ G + GL+DMY KC + A +VFEL+ +I SW M+ GY N
Sbjct: 138 HGYVIRRGFPA--VFSNGLIDMYSKCGDIYVACQVFELMQHTNDI-SWRTMMAGYAHNEC 194
Query: 302 YVEATKFLYLMKASGIQIQE 321
+ E MK + ++ +
Sbjct: 195 FFEVLDLFDYMKKNNFRLNK 214
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/284 (22%), Positives = 125/284 (44%), Gaps = 11/284 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ G A+ +FD+MP RD +W MI G QE + L M +
Sbjct: 55 LVNMYSKMGDPQLAKGVFDKMPKRDVVTWNAMIFGLSHSVAPQEALKLVKSMQLAGQE-- 112
Query: 112 LLVFPAWIIVCVLKACVCTM-NMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
P ++ + L V + +++ + +HG + + G S LI+ Y K +
Sbjct: 113 ----PDFVTIVNLVPAVSRLADIDACRSLHGYVIRRGFPAVFS--NGLIDMYSKCGDIYV 166
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
A VF ++ N + W + F +V + F M + + N + +S L A
Sbjct: 167 ACQVFELMQHTNDISWRTMMAGYAHNECFFEVLDLFDYMKKNNFRLNKVSVASALLAAAD 226
Query: 231 VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWN 290
V D G G+++ + G++SD + ++ MY KC L A+++F+ + K++ +W+
Sbjct: 227 VRDSGR-GKEICEFARQQGIDSDVSITTAMMTMYAKCGNLDKAKQLFQGL-KVKDLVAWS 284
Query: 291 AMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
A++ +++ +A M+ ++ + + AC+ +
Sbjct: 285 AIIDALVQSRYAEDALSLFRDMQNDFLKANNVTLLSVLPACADL 328
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 73/138 (52%), Gaps = 11/138 (7%)
Query: 199 FHQVFNDFKEMGRERIKKNSYTFSSVLKAC-GGVDDDGNCGRQMHANIVKIGLESDEYVQ 257
+H + N + ++ + TF+ VLKAC GG++ G +H IV GLESD +V
Sbjct: 2 YHSILN-------KGLEPDKCTFTFVLKACTGGLEFKE--GILIHRGIVFKGLESDVFVG 52
Query: 258 CGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGI 317
LV+MY K + A+ VF+ + K+++ +WNAM+ G + EA K + M+ +G
Sbjct: 53 TALVNMYSKMGDPQLAKGVFDKM-PKRDVVTWNAMIFGLSHSVAPQEALKLVKSMQLAGQ 111
Query: 318 QIQESLINDLRIACSSIS 335
+ I +L A S ++
Sbjct: 112 EPDFVTIVNLVPAVSRLA 129
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 5/107 (4%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R+ + +L N L+ M+ CGQL + LF EM ++ SW VM+ GY I
Sbjct: 546 RMGFQSNVLVGNCLIDMYAKCGQLHNSEHLFHEMKNKNAVSWNVMLAGYAVHGQGYHAIE 605
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFK 145
LF+ M K L F + VL AC + ++ G+++ ++K
Sbjct: 606 LFSLMQKSHIQADSLSF-----LSVLSACRHSGLIDEGRKIFDSMYK 647
>gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Brachypodium distachyon]
Length = 919
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/286 (28%), Positives = 139/286 (48%), Gaps = 13/286 (4%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL ++V G ++ A Q+FD + W +M+V Y + D + +F M+
Sbjct: 285 LLDLYVKSGDIEEALQIFDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPN 344
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+P C+L+ C T + LG+Q+H L K G ++ ++G LI+ Y K+ L+ A
Sbjct: 345 KFTYP-----CMLRTCTHTGEIGLGEQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKA 399
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
+ ++ + V WT+ I + + FKEM I ++ +S + AC G+
Sbjct: 400 QRILDMIEEKDVVSWTSMIAGYVQHEFCKEALETFKEMQACGIWPDNIGLASAISACAGI 459
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
+ G Q+HA + G +D + GLV +Y +C + ++A FE I K+ I +WN
Sbjct: 460 KAV-HQGSQIHARVYVSGYSADVSIWNGLVYLYARCGISKEAFSSFEAIEHKEGI-TWNG 517
Query: 292 MLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISAS 337
++ G+ ++GLY EA K M +G + ++ SSISAS
Sbjct: 518 LISGFAQSGLYEEALKVFMKMDQAGAKY------NVFTFVSSISAS 557
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/323 (24%), Positives = 147/323 (45%), Gaps = 10/323 (3%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
Y C+++ CT + G E ++ + + + + L+ M+ G LD A+++ D +
Sbjct: 348 YPCMLRTCTHTGE-IGLGEQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMI 406
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI-IVCVLKACVCTM 131
+D SW MI GYV +E + F EM ++P I + + AC
Sbjct: 407 EEKDVVSWTSMIAGYVQHEFCKEALETFKEM------QACGIWPDNIGLASAISACAGIK 460
Query: 132 NMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIV 191
+ G Q+H ++ G S ++S+ L+ Y + ++A F ++ + W I
Sbjct: 461 AVHQGSQIHARVYVSGYSADVSIWNGLVYLYARCGISKEAFSSFEAIEHKEGITWNGLIS 520
Query: 192 NNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLE 251
+ G + + F +M + K N +TF S + A + D G+Q+HA ++K G
Sbjct: 521 GFAQSGLYEEALKVFMKMDQAGAKYNVFTFVSSISASANLADIKQ-GKQIHARVIKTGYT 579
Query: 252 SDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYL 311
S+ + L+ +YGKC + DA+ F + K+N SWN ++ ++G +EA
Sbjct: 580 SETEISNALISLYGKCGSIEDAKMDF-FEMTKRNEVSWNTIITCCSQHGRGLEALDLFDQ 638
Query: 312 MKASGIQIQESLINDLRIACSSI 334
MK G++ + + ACS +
Sbjct: 639 MKQQGLKPSDVTFVGVLTACSHV 661
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 80/287 (27%), Positives = 139/287 (48%), Gaps = 7/287 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ +++ C A ++F +M D ++ +I G+ + +F EM
Sbjct: 182 NALISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSG-- 239
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
L + I +L AC ++ GKQ+H L K G S + + GSL++ Y K +E
Sbjct: 240 ---LSPDSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIE 296
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
+A +F R N V+W +V + + F+ F M ++ N +T+ +L+ C
Sbjct: 297 EALQIFDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCT 356
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ G G Q+H+ +K G +SD YV L+DMY K L A+R+ ++I ++K++ SW
Sbjct: 357 HTGEIG-LGEQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMI-EEKDVVSW 414
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+M+ GY+++ EA + M+A GI + AC+ I A
Sbjct: 415 TSMIAGYVQHEFCKEALETFKEMQACGIWPDNIGLASAISACAGIKA 461
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/309 (25%), Positives = 151/309 (48%), Gaps = 13/309 (4%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRV---NIKPTLLFLNRLLLMHVSCGQLDTARQLF 69
+ C ++ C + S + L+ I + + + N L+ ++ G + AR++F
Sbjct: 44 FACALRAC---RGSGRRWPLVPEIHAKAIICGLSGYRIIGNLLIDLYAKKGFVRRARRVF 100
Query: 70 DEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVC 129
+E+ +RD SW ++ GY +E + L+ EM + +V +++ +L AC
Sbjct: 101 EELSVRDNVSWVAVLSGYAQNGLGEEAVRLYREMHRSG-----VVPTPYVLSSILSACTK 155
Query: 130 TMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAK 189
T +LG+ +H ++K G + +LI+ Y + R AD VF + ++V +
Sbjct: 156 TELFQLGRLIHVQVYKQGFFSETFVGNALISLYLRCRSFRLADRVFCDMLYCDSVTFNTL 215
Query: 190 IVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIG 249
I + + GH + F EM + +S T +S+L AC V D G+Q+H+ ++K G
Sbjct: 216 ISGHAQCGHGDRALGIFDEMQLSGLSPDSVTIASLLAACSAVGDLRK-GKQLHSYLLKAG 274
Query: 250 LESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFL 309
+ D ++ L+D+Y K + +A ++F+ D+ N+ WN MLV Y + ++
Sbjct: 275 MSLDYIMEGSLLDLYVKSGDIEEALQIFD-SGDRTNVVLWNLMLVAYGQIDDLAKSFDIF 333
Query: 310 YLMKASGIQ 318
Y M A+G++
Sbjct: 334 YRMLAAGVR 342
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 114/246 (46%), Gaps = 9/246 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ ++ CG A F+ + ++ +W +I G+ Y+E + +F +M +
Sbjct: 485 NGLVYLYARCGISKEAFSSFEAIEHKEGITWNGLISGFAQSGLYEEALKVFMKMDQAGAK 544
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ + F V + A +++ GKQ+H + K G + ++ +LI+ YGK +E
Sbjct: 545 YNVFTF-----VSSISASANLADIKQGKQIHARVIKTGYTSETEISNALISLYGKCGSIE 599
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
DA F ++ + N V W I + G + + F +M ++ +K + TF VL AC
Sbjct: 600 DAKMDFFEMTKRNEVSWNTIITCCSQHGRGLEALDLFDQMKQQGLKPSDVTFVGVLTACS 659
Query: 230 --GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
G+ ++G C + +N I D Y C +VD+ G+ L A+R E + +
Sbjct: 660 HVGLVEEGLCYFKSMSNEHGIHPRPDHYA-C-VVDILGRAGQLDRAKRFVEEMPIPADSM 717
Query: 288 SWNAML 293
W +L
Sbjct: 718 VWRTLL 723
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 113/266 (42%), Gaps = 12/266 (4%)
Query: 72 MPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCT- 130
M R S+ + G++ D ++ + LFA K +V A C L+AC +
Sbjct: 1 MTPRGAASFNRPLAGFLAPDDPEKLLPLFA-----AKCRQYMVLGAVDFACALRACRGSG 55
Query: 131 MNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKI 190
L ++H G S + LI+ Y K + A VF +L + V W A +
Sbjct: 56 RRWPLVPEIHAKAIICGLSGYRIIGNLLIDLYAKKGFVRRARRVFEELSVRDNVSWVAVL 115
Query: 191 VNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGL 250
+ G + ++EM R + Y SS+L AC + GR +H + K G
Sbjct: 116 SGYAQNGLGEEAVRLYREMHRSGVVPTPYVLSSILSACTKT-ELFQLGRLIHVQVYKQGF 174
Query: 251 ESDEYVQCGLVDMYGKCRLLRDAERVF--ELIVDKKNIASWNAMLVGYIRNGLYVEATKF 308
S+ +V L+ +Y +CR R A+RVF L D ++N ++ G+ + G A
Sbjct: 175 FSETFVGNALISLYLRCRSFRLADRVFCDMLYCDS---VTFNTLISGHAQCGHGDRALGI 231
Query: 309 LYLMKASGIQIQESLINDLRIACSSI 334
M+ SG+ I L ACS++
Sbjct: 232 FDEMQLSGLSPDSVTIASLLAACSAV 257
>gi|302761610|ref|XP_002964227.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
gi|300167956|gb|EFJ34560.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
Length = 736
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 85/328 (25%), Positives = 152/328 (46%), Gaps = 5/328 (1%)
Query: 12 MYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDE 71
M+ I C+ KD L I + ++ ++ L+ M+ C L+ AR+ FDE
Sbjct: 60 MFVVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDE 119
Query: 72 MPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTM 131
M + +W +I GY D++ + ++ +M+ + M A L AC
Sbjct: 120 MGKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKP--DAITFSSALYACSVVG 177
Query: 132 NMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIV 191
++ G+++ G + + + +LIN Y K LE A VF +LK + + W I
Sbjct: 178 DISQGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMIS 237
Query: 192 NNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLE 251
++G Q F+ MG K N TF +L AC ++D GR +H + + G E
Sbjct: 238 GYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQ-GRAIHRKVKEHGYE 296
Query: 252 SDEYVQCGLVDMYGKC-RLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLY 310
SD + L++MY KC L +A +VFE + +++ +WN ++V Y++ G +A
Sbjct: 297 SDLVIGNVLLNMYTKCSSSLEEARQVFERL-RTRDVITWNILIVAYVQYGQAKDALDIFK 355
Query: 311 LMKASGIQIQESLINDLRIACSSISASK 338
M+ + E ++++ AC+ + A +
Sbjct: 356 QMQLENVAPNEITLSNVLSACAVLGAKR 383
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 76/287 (26%), Positives = 130/287 (45%), Gaps = 17/287 (5%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMM---KRKKGHM 111
M+ CG + A +F + + SW +++ + Y+E + + M+ R G M
Sbjct: 1 MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSR-NISLTGSLINFYGKFRCLED 170
+V + C + +++ G+ +H ++ + +I L +LI Y + R LE
Sbjct: 61 FVV--------AIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLEL 112
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFH---QVFNDFKEMGRERIKKNSYTFSSVLKA 227
A F ++ + V W A I R G +++ D E +K ++ TFSS L A
Sbjct: 113 ARKTFDEMGKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYA 172
Query: 228 CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
C V D GR++ A V G SD VQ L++MY KC L A +VF+ + ++ IA
Sbjct: 173 CSVVGDISQ-GREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIA 231
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
WN M+ GY + G +A + M + + L AC+++
Sbjct: 232 -WNTMISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNL 277
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 113/254 (44%), Gaps = 12/254 (4%)
Query: 46 LLFLNRLLLMHVSCGQ-LDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMM 104
L+ N LL M+ C L+ ARQ+F+ + RD +W ++IV YV ++ + +F +M
Sbjct: 299 LVIGNVLLNMYTKCSSSLEEARQVFERLRTRDVITWNILIVAYVQYGQAKDALDIFKQMQ 358
Query: 105 KRKKGHMLLVFPAWIIVC-VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYG 163
V P I + VL AC GK VH L+ ++ L SL+N Y
Sbjct: 359 LEN------VAPNEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLENSLMNMYN 412
Query: 164 KFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSS 223
+ L+D VF+ ++ + V W+ I + GH F E+ +E + + T S
Sbjct: 413 RCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQEGLAADDVTMVS 472
Query: 224 VLKAC--GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIV 281
L AC GG+ +G + + + GL D +VD+ + L AE + +
Sbjct: 473 TLSACSHGGMLKEGV--QSFLSMVGDHGLAPDYRHFLCMVDLLSRAGRLEAAENLIHDMP 530
Query: 282 DKKNIASWNAMLVG 295
+ +W ++L G
Sbjct: 531 FLPDAVAWTSLLSG 544
>gi|125550837|gb|EAY96546.1| hypothetical protein OsI_18451 [Oryza sativa Indica Group]
Length = 591
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 85/289 (29%), Positives = 139/289 (48%), Gaps = 8/289 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ + CG +A ++F M ++ +W MI G Y+E +LF +M++
Sbjct: 162 NALVTAYFECGSPASAERVFHGMAEKNVITWTAMISGMARAELYKESFSLFGQMIRTVDA 221
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ C L AC ++ G+QVHGL+ K G ++ + L++ Y K +E
Sbjct: 222 NNA------TYSCTLLACARSLAAREGQQVHGLVVKAGFEADLHVESGLMDVYSKCGLME 275
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
DA VF + + V T +V + G + F F EM + + T S+VL A G
Sbjct: 276 DALTVFRSCREPDEVFLTVILVGFAQNGLEEKAFELFAEMVGAGNEIDENTVSTVLGAFG 335
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
G+Q+HA ++K + YV GLV+MY KC LR++ +VF+ + KN SW
Sbjct: 336 -ASAPFALGKQIHALVIKRCFGVNTYVCNGLVNMYSKCGELRESVQVFDEM-PSKNSVSW 393
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASK 338
N+++ + R+G E + MKA G + + L ACS + ++K
Sbjct: 394 NSIIAAFARHGHGSEVYQLFESMKADGAKPTDVTFLSLLHACSHVGSAK 442
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 84/297 (28%), Positives = 137/297 (46%), Gaps = 22/297 (7%)
Query: 38 KRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECI 97
R ++ L+ N L+ M+ CG+ + A ++FDEM +RD SW +I D +
Sbjct: 49 SRPWLRHVLVAWNALVSMYARCGRREDAARVFDEMRVRDAVSWNSLIAASRGAGD---AL 105
Query: 98 TLFAEMMK-------RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSR 150
LF M++ R +L A L AC VHGL+ G
Sbjct: 106 ALFRRMLRSDARACDRATFTTVLSECARAGAASLPACA---------MVHGLVVSCGFEA 156
Query: 151 NISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMG 210
+ + +L+ Y + A+ VF + N + WTA I R + + F+ F +M
Sbjct: 157 EVPVGNALVTAYFECGSPASAERVFHGMAEKNVITWTAMISGMARAELYKESFSLFGQMI 216
Query: 211 RERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLL 270
R + N+ T+S L AC G+Q+H +VK G E+D +V+ GL+D+Y KC L+
Sbjct: 217 RT-VDANNATYSCTLLAC-ARSLAAREGQQVHGLVVKAGFEADLHVESGLMDVYSKCGLM 274
Query: 271 RDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDL 327
DA VF + + +LVG+ +NGL +A + M +G +I E+ ++ +
Sbjct: 275 EDALTVFRSCREPDEV-FLTVILVGFAQNGLEEKAFELFAEMVGAGNEIDENTVSTV 330
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 70/282 (24%), Positives = 121/282 (42%), Gaps = 8/282 (2%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
Y+C + C + +A + ++ + + + L + L+ ++ CG ++ A +F
Sbjct: 226 YSCTLLACA-RSLAAREGQQVHGLVVKAGFEADLHVESGLMDVYSKCGLMEDALTVFRSC 284
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN 132
D V++VG+ ++ LFAEM+ + VL A +
Sbjct: 285 REPDEVFLTVILVGFAQNGLEEKAFELFAEMVGAGN-----EIDENTVSTVLGAFGASAP 339
Query: 133 MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192
LGKQ+H L+ K N + L+N Y K L ++ VF ++ N+V W + I
Sbjct: 340 FALGKQIHALVIKRCFGVNTYVCNGLVNMYSKCGELRESVQVFDEMPSKNSVSWNSIIAA 399
Query: 193 NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIG-LE 251
R GH +V+ F+ M + K TF S+L AC V +++ + G L
Sbjct: 400 FARHGHGSEVYQLFESMKADGAKPTDVTFLSLLHACSHVGSAKKGLEILNSMSSQYGVLP 459
Query: 252 SDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
E+ C +VDM G+ LL DA+ E + W A++
Sbjct: 460 RMEHYAC-VVDMLGRAGLLDDAKSFIEDGPFTDSALLWQALM 500
>gi|147817099|emb|CAN66439.1| hypothetical protein VITISV_035236 [Vitis vinifera]
Length = 2076
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 87/300 (29%), Positives = 146/300 (48%), Gaps = 12/300 (4%)
Query: 35 HIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQ 94
H K NI + + L+ ++ G+++ A LF D W M+ GY+ D
Sbjct: 390 HALKTSNIADSFV-ATALIDVYSRSGKMEEAELLFQNKDDLDLACWNAMMFGYIISNDGN 448
Query: 95 ECITLFAEMMK--RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNI 152
+ + LF+ + + K + L A KAC C + ++ GKQ+H + K G ++
Sbjct: 449 KALGLFSLINRSGEKSDQITLATAA-------KACGCLVLLDZGKQIHAHVIKAGFXSDL 501
Query: 153 SLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRE 212
+ +++ Y K + +A VF+ + + V WT+ I G+ Q + +M +
Sbjct: 502 YVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHQMRQS 561
Query: 213 RIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRD 272
+ + YTF++++KA V GRQ+HAN++K+ SD +V LVDMY KC + D
Sbjct: 562 GVMPDEYTFATLIKASSYVTALEQ-GRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIED 620
Query: 273 AERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
R+F+ + + +NI WNAMLVG ++G EA MK+ GI+ + ACS
Sbjct: 621 XYRLFKKM-NVRNIVLWNAMLVGIAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACS 679
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/255 (27%), Positives = 122/255 (47%), Gaps = 11/255 (4%)
Query: 47 LFLNRLLL-MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L++N +L M++ CG + A +F+ + D +W MI G VD + + + ++ +M
Sbjct: 501 LYVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHQM-- 558
Query: 106 RKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
R+ G V P + ++KA +E G+Q+H + KL + + SL++ Y K
Sbjct: 559 RQSG----VMPDEYTFATLIKASSYVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAK 614
Query: 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
+ED +F ++ N V+W A +V + G+ + N FK M I+ + +F +
Sbjct: 615 CGNIEDXYRLFKKMNVRNIVLWNAMLVGIAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGI 674
Query: 225 LKACGGVDDDGNCGRQMHANIVKIGLESD-EYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
L AC H+ G+E + E+ C LVD G L+++ ++V E + K
Sbjct: 675 LSACSLAGLTSEAYEYFHSMPNDCGIEPEIEHYSC-LVDALGXAGLVQEXDKVIETMPFK 733
Query: 284 KNIASWNAMLVGYIR 298
+ AS N L+G R
Sbjct: 734 AS-ASMNRALLGACR 747
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 104/217 (47%), Gaps = 10/217 (4%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
VL A +N + +Q+H K + + + +LI+ Y + +E+A+ +F +
Sbjct: 373 VLAAVADGLN--ISRQIHVHALKTSNIADSFVATALIDVYSRSGKMEEAELLFQNKDDLD 430
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG---VDDDGNCGR 239
W A + ++ F + R K + T ++ KACG +D+ G+
Sbjct: 431 LACWNAMMFGYIISNDGNKALGLFSLINRSGEKSDQITLATAAKACGCLVLLDZ----GK 486
Query: 240 QMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRN 299
Q+HA+++K G SD YV G++DMY KC + +A VF I ++A W +M+ G + N
Sbjct: 487 QIHAHVIKAGFXSDLYVNSGILDMYIKCGDMVNAGIVFNYISAPDDVA-WTSMISGCVDN 545
Query: 300 GLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
G +A + + M+ SG+ E L A S ++A
Sbjct: 546 GNEDQALRIYHQMRQSGVMPDEYTFATLIKASSYVTA 582
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 93/211 (44%), Gaps = 12/211 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADY-----QECITLFAEMM 104
N LL ++ CG L A Q+FD P RD +W ++ Y D QE + LF ++
Sbjct: 123 NNLLTLYSKCGSLSFACQVFDTTPERDLVTWNAILGAYASSVDSNDGNAQEGLHLF-RLL 181
Query: 105 KRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
+ G + + VLK C + + K VHG K+G ++ + G+L+N Y K
Sbjct: 182 RESLGSTTRM----TLAPVLKLCSNSXCLWAAKGVHGYAIKIGLVWDVFVFGTLMNIYSK 237
Query: 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
+ DA +F ++ + V+W + + G + F F E R + + ++ +
Sbjct: 238 CGRMXDARLLFDGMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLXPDEFSVQLI 297
Query: 225 LKACGGVD-DDGNC-GRQMHANIVKIGLESD 253
L V+ D+G Q+ A K+ L D
Sbjct: 298 LNGVFEVNXDEGKWHADQVQAYXXKLSLSDD 328
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 74/284 (26%), Positives = 116/284 (40%), Gaps = 42/284 (14%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ ++ CG++ AR LFD M RD W +M+ GYV + +E LF+E H
Sbjct: 231 LMNIYSKCGRMXDARLLFDGMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEF------HR 284
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGK----QVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
+ P V ++ V +N + GK QV KL S
Sbjct: 285 SGLXPDEFSVQLILNGVFEVNXDEGKWHADQVQAYXXKLSLS------------------ 326
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
+D VF K+ + +W G F M + + T VL A
Sbjct: 327 -DDNXDVFCWNKKLSEYLWA---------GDNWGAIECFVNMNGLNVXYDXVTLLEVLAA 376
Query: 228 CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
V D N RQ+H + +K +D +V L+D+Y + + +AE +F+ D ++A
Sbjct: 377 ---VADGLNISRQIHVHALKTSNIADSFVATALIDVYSRSGKMEEAELLFQ-NKDDLDLA 432
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
WNAM+ GYI + +A L+ SG + + + AC
Sbjct: 433 CWNAMMFGYIISNDGNKALGLFSLINRSGEKSDQITLATAAKAC 476
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 95/207 (45%), Gaps = 13/207 (6%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
+L+ + T N+ LGK H + G++ + LT +L+ Y K L A VF +
Sbjct: 90 LLRTAISTHNLLLGKCTHARIVVSGTAGDHFLTNNLLTLYSKCGSLSFACQVFDTTPERD 149
Query: 183 TVVWTAKIVN-----NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC 237
V W A + + +G+ + + F+ + T + VLK C + C
Sbjct: 150 LVTWNAILGAYASSVDSNDGNAQEGLHLFRLLRESLGSTTRMTLAPVLKLCS----NSXC 205
Query: 238 ---GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLV 294
+ +H +KIGL D +V L+++Y KC + DA +F+ + + +++ WN ML
Sbjct: 206 LWAAKGVHGYAIKIGLVWDVFVFGTLMNIYSKCGRMXDARLLFDGMRE-RDVVLWNMMLK 264
Query: 295 GYIRNGLYVEATKFLYLMKASGIQIQE 321
GY++ GL EA + SG+ E
Sbjct: 265 GYVQLGLEKEAFQLFSEFHRSGLXPDE 291
>gi|255550217|ref|XP_002516159.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544645|gb|EEF46161.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1439
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/287 (27%), Positives = 141/287 (49%), Gaps = 19/287 (6%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ ++ G + A +F+ D +W M+ GY+ D+ + + LFA M ++ +
Sbjct: 1131 LIDVYSRSGLMAEAEFIFENKNKFDLAAWNAMMFGYIICGDHDKGLKLFAFMHEKGES-- 1188
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+ + KAC + +E GKQ+H L K G + ++ L+ +++ Y K +ED
Sbjct: 1189 ---CDEYTLATAAKACGSLVRLEQGKQIHALAIKFGLNSDLFLSSGILDMYIKCGNMEDG 1245
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
+F + + V WT I G + + +++M I + YTF++++KA
Sbjct: 1246 HLLFDNIPVPDDVAWTIMISGCVENGDEDRALSVYRQMRLSGILPDEYTFATLIKAS--- 1302
Query: 232 DDDGNC------GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
+C GRQ+HAN++K+ SD +V L+DMY KC ++ DA +F + D +N
Sbjct: 1303 ----SCLTALEQGRQIHANVIKLECASDPFVGTSLIDMYAKCGIIEDAYCLFRRM-DVRN 1357
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
I WNAMLV ++G EA +M++ I+ + + ACS
Sbjct: 1358 IVVWNAMLVSLAQHGHGEEALHLFKVMQSHSIKPDKVTFIGVLSACS 1404
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 109/215 (50%), Gaps = 1/215 (0%)
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
+V VL A T ++ LGK +HG+ K G +S+ SLIN Y K + A VF+ +
Sbjct: 991 LVVVLAAATGTGDLMLGKLIHGMTLKSGFDSVVSVANSLINMYSKMGFVSLAHTVFTGMN 1050
Query: 180 RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGR 239
+ + W + I + G + N + R+ ++ + +T +SVLKAC + + +
Sbjct: 1051 ELDLISWNSMISCYAQNGLQKESVNLLVGLLRDGLQPDHFTLASVLKACSSLTEGLFLSK 1110
Query: 240 QMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRN 299
Q+H + K + ++ +V L+D+Y + L+ +AE +FE +K ++A+WNAM+ GYI
Sbjct: 1111 QIHVYVTKTSIIAENFVSTALIDVYSRSGLMAEAEFIFE-NKNKFDLAAWNAMMFGYIIC 1169
Query: 300 GLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
G + + K M G E + AC S+
Sbjct: 1170 GDHDKGLKLFAFMHEKGESCDEYTLATAAKACGSL 1204
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 97/184 (52%), Gaps = 8/184 (4%)
Query: 47 LFLNRLLL-MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
LFL+ +L M++ CG ++ LFD +P+ D +W +MI G V+ D ++++ +M
Sbjct: 1226 LFLSSGILDMYIKCGNMEDGHLLFDNIPVPDDVAWTIMISGCVENGDEDRALSVYRQM-- 1283
Query: 106 RKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
R G + P + ++KA C +E G+Q+H + KL + + + SLI+ Y K
Sbjct: 1284 RLSG----ILPDEYTFATLIKASSCLTALEQGRQIHANVIKLECASDPFVGTSLIDMYAK 1339
Query: 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
+EDA +F ++ N VVW A +V+ + GH + + FK M IK + TF V
Sbjct: 1340 CGIIEDAYCLFRRMDVRNIVVWNAMLVSLAQHGHGEEALHLFKVMQSHSIKPDKVTFIGV 1399
Query: 225 LKAC 228
L AC
Sbjct: 1400 LSAC 1403
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 78/288 (27%), Positives = 127/288 (44%), Gaps = 8/288 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ G + A +F M D SW MI Y +E + L +++
Sbjct: 1027 NSLINMYSKMGFVSLAHTVFTGMNELDLISWNSMISCYAQNGLQKESVNLLVGLLRDG-- 1084
Query: 110 HMLLVFPAWIIVCVLKACVC-TMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
L + + VLKAC T + L KQ+H + K ++ +LI+ Y + +
Sbjct: 1085 ---LQPDHFTLASVLKACSSLTEGLFLSKQIHVYVTKTSIIAENFVSTALIDVYSRSGLM 1141
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+A+F+F + + W A + G + F M + + YT ++ KAC
Sbjct: 1142 AEAEFIFENKNKFDLAAWNAMMFGYIICGDHDKGLKLFAFMHEKGESCDEYTLATAAKAC 1201
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
G + G+Q+HA +K GL SD ++ G++DMY KC + D +F+ I ++A
Sbjct: 1202 GSLVRL-EQGKQIHALAIKFGLNSDLFLSSGILDMYIKCGNMEDGHLLFDNIPVPDDVA- 1259
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
W M+ G + NG A M+ SGI E L A S ++A
Sbjct: 1260 WTIMISGCVENGDEDRALSVYRQMRLSGILPDEYTFATLIKASSCLTA 1307
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 69/223 (30%), Positives = 107/223 (47%), Gaps = 18/223 (8%)
Query: 122 CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH 181
+L+A V T N+ LGK +H + G + + L +LI Y K + A +F +
Sbjct: 709 SLLRAAVSTSNLHLGKCIHANIITSGLTSDRFLANNLITMYSKCGSVSSARQLFDRTPDR 768
Query: 182 NTVVWTAKIVNNCR--EGHFHQVFNDFK--EMGRER-IKKNSYTFSSVLKAC---GGVDD 233
+ V W A + R E + V F + RER + + T + +LK C G V
Sbjct: 769 DLVTWNAVLSAYARSDESEYDHVVEGFHIFRLLRERFVSTSKLTLAPMLKLCLLSGYV-- 826
Query: 234 DGNCGRQ-MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAM 292
C Q +H VKIGLE D +V LV++Y K L+R+A +F+ I+ ++++ WN M
Sbjct: 827 ---CASQAVHGYAVKIGLELDVFVSGALVNIYSKFGLVREARGLFD-IMQERDVVLWNVM 882
Query: 293 LVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
L Y+ GL EA F SG++ ++ +R S IS
Sbjct: 883 LKAYVEMGLVKEALSFFSQFHQSGLRPDDA---SMRCVVSGIS 922
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 65/276 (23%), Positives = 124/276 (44%), Gaps = 40/276 (14%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYV--DVADYQ---ECITLFAEMM 104
N L+ M+ CG + +ARQLFD P RD +W ++ Y D ++Y E +F +
Sbjct: 743 NNLITMYSKCGSVSSARQLFDRTPDRDLVTWNAVLSAYARSDESEYDHVVEGFHIFRLLR 802
Query: 105 KRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
+R L + +C+L VC + VHG K+G ++ ++G+L+N Y K
Sbjct: 803 ERFVSTSKLTLAPMLKLCLLSGYVCA-----SQAVHGYAVKIGLELDVFVSGALVNIYSK 857
Query: 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
F + +A +F ++ + V+W + + EMG + K + +F S
Sbjct: 858 FGLVREARGLFDIMQERDVVLWNV-------------MLKAYVEMG---LVKEALSFFSQ 901
Query: 225 LKACGGVDDDGNCGRQMHANIVKIGLESD-EYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
G DD + R + + I ++G ++ Y++ ++ A ++F D
Sbjct: 902 FHQSGLRPDDASM-RCVVSGISEVGYDTGRRYIE----------QIQAYATKLF-FCDDN 949
Query: 284 KNIASWNAMLVGYIRNGLYVEATK-FLYLMKASGIQ 318
++ WN L Y++ G + A F+ ++ +S ++
Sbjct: 950 TDVVMWNKKLSEYLQAGAFWAAVDCFINMLTSSHVK 985
>gi|297829948|ref|XP_002882856.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297328696|gb|EFH59115.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 753
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 90/299 (30%), Positives = 147/299 (49%), Gaps = 15/299 (5%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
+ +N L+ M+ CG+LD A LFD RD SW +I GYV V +E + L A+M +
Sbjct: 184 VFLINVLIDMYSKCGKLDQAMSLFDRCNERDQVSWNSLISGYVRVGAAEEPLNLLAKMHR 243
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMN---MELGKQVHGLLFKLGSSRNISLTGSLINFY 162
L + + VLKAC +N ME G +H KLG +I + +L++ Y
Sbjct: 244 AG-----LKLTTYALGSVLKACCINLNEGLMEKGMAIHCYAAKLGMEFDIVVRTALLDMY 298
Query: 163 GKFRCLEDADFVFSQLKRHNTVVWTAKI-----VNNCREGHFHQVFNDFKEMGRERIKKN 217
K L++A +FS + N V + A I +++ + + F F EM R ++ +
Sbjct: 299 AKNGSLKEAIKLFSLMPAKNVVTYNAMISGFLQMDDITDEASSEAFKLFMEMQRRGLEPS 358
Query: 218 SYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVF 277
TFS VLKAC GRQ+HA I K +SDE++ L+++Y D + F
Sbjct: 359 PSTFSVVLKACSAAKTL-EYGRQIHALICKNNFQSDEFIGSALIELYALMGSTEDGMQCF 417
Query: 278 ELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
K++IASW +++ +++N A + +S I+ +E ++ + AC+ +A
Sbjct: 418 A-STSKQDIASWTSIIDCHVQNEQLESAFDLFRQLFSSPIRPEEYTVSLMMSACADFAA 475
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 88/286 (30%), Positives = 138/286 (48%), Gaps = 13/286 (4%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+ C +L ARQLFD MP R+ S+ +I GY V Y++ + LF E L
Sbjct: 92 MYCKCRELGFARQLFDRMPERNIISFNSLISGYTQVGFYEQAMELFLEARDDN-----LK 146
Query: 115 FPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFV 174
+ L C +++ GK +HGL+ G S+ + L LI+ Y K L+ A +
Sbjct: 147 LDKFTYAGALGFCGERCDLDFGKLLHGLVVVNGLSQQVFLINVLIDMYSKCGKLDQAMSL 206
Query: 175 FSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDD 234
F + + V W + I R G + N +M R +K +Y SVLKAC ++
Sbjct: 207 FDRCNERDQVSWNSLISGYVRVGAAEEPLNLLAKMHRAGLKLTTYALGSVLKACCINLNE 266
Query: 235 G--NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAM 292
G G +H K+G+E D V+ L+DMY K L++A ++F L+ KN+ ++NAM
Sbjct: 267 GLMEKGMAIHCYAAKLGMEFDIVVRTALLDMYAKNGSLKEAIKLFSLM-PAKNVVTYNAM 325
Query: 293 LVGY-----IRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSS 333
+ G+ I + EA K M+ G++ S + + ACS+
Sbjct: 326 ISGFLQMDDITDEASSEAFKLFMEMQRRGLEPSPSTFSVVLKACSA 371
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 129/285 (45%), Gaps = 12/285 (4%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADY-----QECITLFAEMMKR 106
LL M+ G L A +LF MP ++ ++ MI G++ + D E LF EM +R
Sbjct: 294 LLDMYAKNGSLKEAIKLFSLMPAKNVVTYNAMISGFLQMDDITDEASSEAFKLFMEMQRR 353
Query: 107 KKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166
L P+ V VLKAC +E G+Q+H L+ K + + +LI Y
Sbjct: 354 G----LEPSPSTFSV-VLKACSAAKTLEYGRQIHALICKNNFQSDEFIGSALIELYALMG 408
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
ED F+ + + WT+ I + + F+ F+++ I+ YT S ++
Sbjct: 409 STEDGMQCFASTSKQDIASWTSIIDCHVQNEQLESAFDLFRQLFSSPIRPEEYTVSLMMS 468
Query: 227 ACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
AC + G Q+ +K G+++ V+ + MY K + A +VF + V ++
Sbjct: 469 ACADFAALSS-GEQIQGYAIKSGIDAYTSVKTSSISMYAKSGNMPLANKVF-IEVQNPDV 526
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
A+++AM+ ++G +A MK GI+ + + IAC
Sbjct: 527 ATYSAMISSLAQHGSAHDALNIFESMKTRGIKPNQQAFLGVLIAC 571
>gi|302774170|ref|XP_002970502.1| hypothetical protein SELMODRAFT_93612 [Selaginella moellendorffii]
gi|300162018|gb|EFJ28632.1| hypothetical protein SELMODRAFT_93612 [Selaginella moellendorffii]
Length = 825
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/285 (28%), Positives = 142/285 (49%), Gaps = 8/285 (2%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ C L+ R LF++MP R+ SW VM+ Y ++ + + E M+
Sbjct: 343 LVAMYSKCESLEDTRWLFEKMPQRNVISWNVMVTAYAKHGLGRKAVQI-TEYMQLDG--- 398
Query: 112 LLVFPAWII-VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
V P + V +L C + +++LG++VHG + + ++ L SL+N YG+ +E
Sbjct: 399 --VKPDNVTCVGLLNVCTGSADLKLGRKVHGWIAEGRCEADLILWNSLLNMYGRCGEVEQ 456
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
A+ VF + + N + WTA + R+ F + +K TF L AC G
Sbjct: 457 AEMVFDGILQRNVISWTAMLTAYSRQNRQDMALLLFHAIHLSGVKPTCITFLEALDACVG 516
Query: 231 VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWN 290
+ G GR +H+ V+ G ++D + LV MYG+C +RDA+ F+ +KN +W+
Sbjct: 517 AEALGK-GRLVHSCAVQSGNDTDVSLGSALVAMYGRCGSIRDAKACFDDTEVRKNHVTWS 575
Query: 291 AMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
AM+ ++++G E + L M+ G+ + + ACS+++
Sbjct: 576 AMIAAFVQHGQDREGLQHLRFMQQQGLDMSPATFASTLSACSNLA 620
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/273 (27%), Positives = 136/273 (49%), Gaps = 8/273 (2%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L+ N L+ M+ SCG +D A+++FD MP R+ +W MI + + + ++ +F M
Sbjct: 136 LILENALVSMYGSCGSVDDAKRVFDAMPARNVITWTAMIGAHAETS-LEQAFKVFRLMEL 194
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
+ + V +++AC +E+G +H + S+ L +LI YG+
Sbjct: 195 EGFKSNFVTY-----VTLVQACSKPEFLEVGIILHMRSVESSSAMETPLCNALITMYGRC 249
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
LEDA +FS + + + W A I + GH + ++ M +E K + TF ++L
Sbjct: 250 GRLEDARAIFSSMVERDIIAWNALITEYGQHGHVEEAVLLYQLMLQEGCKPDKVTFVALL 309
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
G + + + +H++IV+ G+ + + LV MY KC L D +FE + ++N
Sbjct: 310 TMSNGPEALTDV-KLVHSHIVESGVSINIALGTALVAMYSKCESLEDTRWLFEKM-PQRN 367
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
+ SWN M+ Y ++GL +A + M+ G++
Sbjct: 368 VISWNVMVTAYAKHGLGRKAVQITEYMQLDGVK 400
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/275 (28%), Positives = 131/275 (47%), Gaps = 11/275 (4%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L+ N LL M+ CG+++ A +FD + R+ SW M+ Y + LF +
Sbjct: 438 LILWNSLLNMYGRCGEVEQAEMVFDGILQRNVISWTAMLTAYSRQNRQDMALLLFHAI-- 495
Query: 106 RKKGHMLLVFPAWIIVC-VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
H+ V P I L ACV + G+ VH + G+ ++SL +L+ YG+
Sbjct: 496 ----HLSGVKPTCITFLEALDACVGAEALGKGRLVHSCAVQSGNDTDVSLGSALVAMYGR 551
Query: 165 FRCLEDADFVFSQLK-RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSS 223
+ DA F + R N V W+A I + G + + M ++ + + TF+S
Sbjct: 552 CGSIRDAKACFDDTEVRKNHVTWSAMIAAFVQHGQDREGLQHLRFMQQQGLDMSPATFAS 611
Query: 224 VLKACGGVDDDGNCGRQMHANIVKIGLESD-EYVQCGLVDMYGKCRLLRDAERVFELIVD 282
L AC + D G+++H+ + + +++ V LV MYGKC L A VFE
Sbjct: 612 TLSACSNLADLRE-GKRIHSYVRERRFDTEAATVTNSLVTMYGKCGSLDCAREVFE-TSR 669
Query: 283 KKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGI 317
+++I WNA++ GY ++G +A + + M+ G+
Sbjct: 670 RQDIICWNAIISGYAQHGQTRDAVELFHRMQQEGV 704
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 127/269 (47%), Gaps = 7/269 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ CG+L+ AR +F M RD +W +I Y +E + L+ M++
Sbjct: 240 NALITMYGRCGRLEDARAIFSSMVERDIIAWNALITEYGQHGHVEEAVLLYQLMLQEGCK 299
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ F A + + + + K VH + + G S NI+L +L+ Y K LE
Sbjct: 300 PDKVTFVALLTMSNGPEALTDV-----KLVHSHIVESGVSINIALGTALVAMYSKCESLE 354
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
D ++F ++ + N + W + + G + + M + +K ++ T +L C
Sbjct: 355 DTRWLFEKMPQRNVISWNVMVTAYAKHGLGRKAVQITEYMQLDGVKPDNVTCVGLLNVCT 414
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
G D GR++H I + E+D + L++MYG+C + AE VF+ I+ ++N+ SW
Sbjct: 415 G-SADLKLGRKVHGWIAEGRCEADLILWNSLLNMYGRCGEVEQAEMVFDGIL-QRNVISW 472
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
AML Y R A + + SG++
Sbjct: 473 TAMLTAYSRQNRQDMALLLFHAIHLSGVK 501
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/281 (27%), Positives = 134/281 (47%), Gaps = 14/281 (4%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R ++ + N L+ + C LD A + F+ M ++ +W +I V + C +
Sbjct: 28 RASLDNRVFLGNHLIHTYGKCHSLDDAWETFERMSYKNVYTWTAII----GVCAHHHCHS 83
Query: 99 LFAEMMKRKKGHMLL--VFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLT 155
L ++++ MLL V P I ++ L +C + + GK +HGL+ + G ++ L
Sbjct: 84 LAIILLRQ----MLLEGVKPDNITLLAALTSCETSQALPAGKLIHGLIAQSGHQCDLILE 139
Query: 156 GSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIK 215
+L++ YG ++DA VF + N + WTA I + E Q F F+ M E K
Sbjct: 140 NALVSMYGSCGSVDDAKRVFDAMPARNVITWTAMIGAHA-ETSLEQAFKVFRLMELEGFK 198
Query: 216 KNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAER 275
N T+ ++++AC + G +H V+ + + L+ MYG+C L DA
Sbjct: 199 SNFVTYVTLVQACSK-PEFLEVGIILHMRSVESSSAMETPLCNALITMYGRCGRLEDARA 257
Query: 276 VFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASG 316
+F +V+ ++I +WNA++ Y ++G EA LM G
Sbjct: 258 IFSSMVE-RDIIAWNALITEYGQHGHVEEAVLLYQLMLQEG 297
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 61/246 (24%), Positives = 115/246 (46%), Gaps = 12/246 (4%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLR-DFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGH 110
L+ M+ CG + A+ FD+ +R + +W+ MI +V +E + M ++
Sbjct: 545 LVAMYGRCGSIRDAKACFDDTEVRKNHVTWSAMIAAFVQHGQDREGLQHLRFMQQQG--- 601
Query: 111 MLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLG-SSRNISLTGSLINFYGKFRCLE 169
L + PA L AC ++ GK++H + + + ++T SL+ YGK L+
Sbjct: 602 -LDMSPA-TFASTLSACSNLADLREGKRIHSYVRERRFDTEAATVTNSLVTMYGKCGSLD 659
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC- 228
A VF +R + + W A I + G F M +E + + TF +L C
Sbjct: 660 CAREVFETSRRQDIICWNAIISGYAQHGQTRDAVELFHRMQQEGVTPDPVTFVCILSVCS 719
Query: 229 -GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
GG+ D+ G +A++V++GLE + ++D+ G+ L++AE + + + I
Sbjct: 720 HGGLLDE---GVYAYASMVELGLEPTQDNYACVIDLLGRAGKLQEAEEFIQSLGTRPAIE 776
Query: 288 SWNAML 293
+ ++L
Sbjct: 777 TLTSLL 782
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/195 (19%), Positives = 78/195 (40%), Gaps = 5/195 (2%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCG 60
M L ++ + + C+ D + +++R+R N L+ M+ CG
Sbjct: 597 MQQQGLDMSPATFASTLSACSNLADLREGKRIHSYVRERRFDTEAATVTNSLVTMYGKCG 656
Query: 61 QLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWII 120
LD AR++F+ +D W +I GY ++ + LF M + + F
Sbjct: 657 SLDCAREVFETSRRQDIICWNAIISGYAQHGQTRDAVELFHRMQQEGVTPDPVTF----- 711
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
VC+L C ++ G + + +LG +I+ G+ L++A+ L
Sbjct: 712 VCILSVCSHGGLLDEGVYAYASMVELGLEPTQDNYACVIDLLGRAGKLQEAEEFIQSLGT 771
Query: 181 HNTVVWTAKIVNNCR 195
+ ++++C+
Sbjct: 772 RPAIETLTSLLSSCK 786
>gi|334185017|ref|NP_186807.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546765|sp|Q9SS97.2|PP205_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g01580
gi|332640170|gb|AEE73691.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 660
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 87/304 (28%), Positives = 144/304 (47%), Gaps = 21/304 (6%)
Query: 2 DNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQ 61
DN LP+ +K C ++ + ++K V + L + L+ M++ CG+
Sbjct: 59 DNFTLPVA-------LKACGELREVNYGEMIHGFVKKDVTLGSDLYVGSSLIYMYIKCGR 111
Query: 62 LDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI-I 120
+ A ++FDE+ D +W+ M+ G+ + + F M+ V P + +
Sbjct: 112 MIEALRMFDELEKPDIVTWSSMVSGFEKNGSPYQAVEFFRRMVMASD-----VTPDRVTL 166
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
+ ++ AC N LG+ VHG + + G S ++SL SL+N Y K R ++A +F +
Sbjct: 167 ITLVSACTKLSNSRLGRCVHGFVIRRGFSNDLSLVNSLLNCYAKSRAFKEAVNLFKMIAE 226
Query: 181 HNTVVWTAKI---VNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC 237
+ + W+ I V N VFND + G E N T VL+AC D
Sbjct: 227 KDVISWSTVIACYVQNGAAAEALLVFNDMMDDGTE---PNVATVLCVLQACAAAHDLEQ- 282
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYI 297
GR+ H ++ GLE++ V LVDMY KC +A VF I +K++ SW A++ G+
Sbjct: 283 GRKTHELAIRKGLETEVKVSTALVDMYMKCFSPEEAYAVFSRI-PRKDVVSWVALISGFT 341
Query: 298 RNGL 301
NG+
Sbjct: 342 LNGM 345
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/294 (26%), Positives = 138/294 (46%), Gaps = 19/294 (6%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L +N LL + A LF + +D SW+ +I YV E + +F +MM
Sbjct: 198 LSLVNSLLNCYAKSRAFKEAVNLFKMIAEKDVISWSTVIACYVQNGAAAEALLVFNDMMD 257
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
+ ++CVL+AC ++E G++ H L + G + ++ +L++ Y K
Sbjct: 258 DGTEPNVAT-----VLCVLQACAAAHDLEQGRKTHELAIRKGLETEVKVSTALVDMYMKC 312
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRE-RIKKNSYTFSSV 224
E+A VFS++ R + V W A I G H+ +F M E + ++ V
Sbjct: 313 FSPEEAYAVFSRIPRKDVVSWVALISGFTLNGMAHRSIEEFSIMLLENNTRPDAILMVKV 372
Query: 225 LKACG--GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282
L +C G + C H+ ++K G +S+ ++ LV++Y +C L +A +VF I
Sbjct: 373 LGSCSELGFLEQAKC---FHSYVIKYGFDSNPFIGASLVELYSRCGSLGNASKVFNGIAL 429
Query: 283 KKNIASWNAMLVGYIRNGLYVEATK----FLYLMKASGIQIQESLINDLRIACS 332
K + W +++ GY G++ + TK F +++K+S ++ E + ACS
Sbjct: 430 KDTVV-WTSLITGY---GIHGKGTKALETFNHMVKSSEVKPNEVTFLSILSACS 479
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/245 (24%), Positives = 118/245 (48%), Gaps = 13/245 (5%)
Query: 65 ARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVL 124
ARQ+F EM R W ++ ++E + F+ M + ++ P L
Sbjct: 13 ARQMFGEMTKRSLYQWNTLLKSLSREKQWEEVLYHFSHMFRDEEKPDNFTLPV-----AL 67
Query: 125 KACVCTMNMELGKQVHGLLFK---LGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH 181
KAC + G+ +HG + K LGS ++ + SLI Y K + +A +F +L++
Sbjct: 68 KACGELREVNYGEMIHGFVKKDVTLGS--DLYVGSSLIYMYIKCGRMIEALRMFDELEKP 125
Query: 182 NTVVWTAKIVNNCREGHFHQVFNDFKEM-GRERIKKNSYTFSSVLKACGGVDDDGNCGRQ 240
+ V W++ + + G +Q F+ M + + T +++ AC + + GR
Sbjct: 126 DIVTWSSMVSGFEKNGSPYQAVEFFRRMVMASDVTPDRVTLITLVSACTKLSNS-RLGRC 184
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
+H +++ G +D + L++ Y K R ++A +F++I +K ++ SW+ ++ Y++NG
Sbjct: 185 VHGFVIRRGFSNDLSLVNSLLNCYAKSRAFKEAVNLFKMIAEK-DVISWSTVIACYVQNG 243
Query: 301 LYVEA 305
EA
Sbjct: 244 AAAEA 248
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 95/183 (51%), Gaps = 4/183 (2%)
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
+ F KF DA +F ++ + + W + + RE + +V F M R+ K ++
Sbjct: 1 MGFCRKFSSSVDARQMFGEMTKRSLYQWNTLLKSLSREKQWEEVLYHFSHMFRDEEKPDN 60
Query: 219 YTFSSVLKACGGVDDDGNCGRQMHANIVK-IGLESDEYVQCGLVDMYGKCRLLRDAERVF 277
+T LKACG + + N G +H + K + L SD YV L+ MY KC + +A R+F
Sbjct: 61 FTLPVALKACGELREV-NYGEMIHGFVKKDVTLGSDLYVGSSLIYMYIKCGRMIEALRMF 119
Query: 278 ELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLM-KASGIQIQESLINDLRIACSSISA 336
+ + +K +I +W++M+ G+ +NG +A +F M AS + + L AC+ +S
Sbjct: 120 DEL-EKPDIVTWSSMVSGFEKNGSPYQAVEFFRRMVMASDVTPDRVTLITLVSACTKLSN 178
Query: 337 SKI 339
S++
Sbjct: 179 SRL 181
>gi|15128441|dbj|BAB62625.1| P0402A09.8 [Oryza sativa Japonica Group]
gi|20804430|dbj|BAB92127.1| P0455C04.2 [Oryza sativa Japonica Group]
Length = 1122
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 89/287 (31%), Positives = 134/287 (46%), Gaps = 15/287 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQEC----ITLFAEMMK 105
N LL + C LD R+LFDEMP RD S+ V+I Y + +C + LF EM K
Sbjct: 275 NSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYA----WNQCAATVLRLFREMQK 330
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
+L + +L ++ +GKQ+H L LG + L +LI+ Y K
Sbjct: 331 LGFDRQVLPY-----ATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKC 385
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
L+ A FS + + WTA I + G + F +M R ++ + TFSS++
Sbjct: 386 GMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSII 445
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
KA + G GRQ+H+ +++ G +S + LVDMY KC L +A R F+ + ++ +
Sbjct: 446 KASSSLAMIG-LGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNS 504
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
I SWNA++ Y G A K M G + ACS
Sbjct: 505 I-SWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACS 550
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/288 (28%), Positives = 144/288 (50%), Gaps = 11/288 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N LL + G L AR++F EM +D ++ M++G + + + LFA M R+ G
Sbjct: 174 NTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAM--RRAG 231
Query: 110 HMLLVFPA--WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
PA + +L ++ LG QVH L+ + S N+ + SL++FY K C
Sbjct: 232 -----IPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDC 286
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
L+D +F ++ + V + I V F+EM + + ++++L
Sbjct: 287 LDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSV 346
Query: 228 CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
G + D + G+Q+HA +V +GL S++ + L+DMY KC +L A+ F +K I
Sbjct: 347 AGSLPD-VHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAI- 404
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
SW A++ GY++NG + EA + M+ +G++ + + + A SS++
Sbjct: 405 SWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLA 452
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 119/273 (43%), Gaps = 14/273 (5%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
LN +L + S G L A+ LF P R+ +W +M+ + + ++LF M+
Sbjct: 77 LNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEG- 135
Query: 109 GHMLLVFPAWIIVC-VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
V P + V VL CT+ +H K G ++ + +L++ Y K
Sbjct: 136 -----VIPDRVTVTTVLNLPGCTV-----PSLHPFAIKFGLDTHVFVCNTLLDAYCKHGL 185
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
L A VF ++ + V + A ++ +EG Q F M R I +TFSS+L
Sbjct: 186 LAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTV 245
Query: 228 CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
G+ G Q+HA +++ + +V L+D Y KC L D R+F+ + ++ N+
Sbjct: 246 AAGM-AHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNV- 303
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQ 320
S+N ++ Y N + M+ G Q
Sbjct: 304 SYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQ 336
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 118/269 (43%), Gaps = 18/269 (6%)
Query: 35 HIRKRVNIKPTLLFL-------NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGY 87
HI K+++ + LL L N L+ M+ CG LD A+ F + SW +I GY
Sbjct: 354 HIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGY 413
Query: 88 VDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLG 147
V ++E + LF++M R+ G L ++KA + LG+Q+H L + G
Sbjct: 414 VQNGQHEEALQLFSDM--RRAG---LRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSG 468
Query: 148 SSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFK 207
++ L++ Y K CL++A F ++ N++ W A I G F+
Sbjct: 469 YKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFE 528
Query: 208 EMGRERIKKNSYTFSSVLKACG--GVDDDGNCGRQMHANIVKIGLES-DEYVQCGLVDMY 264
M +S TF SVL AC G+ D+ C + H + + E+ C ++D
Sbjct: 529 GMLHCGFNPDSVTFLSVLAACSHNGLADE--CMKYFHLMKHQYSISPWKEHYAC-VIDTL 585
Query: 265 GKCRLLRDAERVFELIVDKKNIASWNAML 293
G+ +++ + K + W ++L
Sbjct: 586 GRVGCFSQVQKMLVEMPFKADPIIWTSIL 614
>gi|225428647|ref|XP_002281535.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic [Vitis vinifera]
gi|297741370|emb|CBI32501.3| unnamed protein product [Vitis vinifera]
Length = 697
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/285 (28%), Positives = 140/285 (49%), Gaps = 14/285 (4%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ G + ARQLF+ M R+ +W ++ GY D +E I LF M R+KG
Sbjct: 163 LVDMYSKFGCMGVARQLFESMSERNVVTWNAIVSGYSDHGFSEEAIDLFNLM--RRKG-- 218
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
L+ + I+ ++ A + +++G +HG + + G + + +L++ Y C++DA
Sbjct: 219 -LLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHIKTALMDIYVSHNCVDDA 277
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEM-GRERIKKNSYTFSSVLKAC-- 228
VFS++ + WT + H+ + F +M G + +K +S +L +C
Sbjct: 278 HRVFSEMSVKDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIALMGILSSCSH 337
Query: 229 -GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
G + GR++HA +K ++ +V ++DMY C L DA+R F + +K++
Sbjct: 338 SGALQQ----GRRVHALAIKTCFANNIFVGSAVIDMYANCGNLEDAKRFF-YGMGEKDVV 392
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
WNAM+ G NG +A MK SG+ ES + ACS
Sbjct: 393 CWNAMIAGNGMNGYGTDAIDLFLQMKGSGLDPDESTFVSVLYACS 437
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 80/274 (29%), Positives = 128/274 (46%), Gaps = 19/274 (6%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEM-MKRKK 108
N L+ +V CG L A+Q+F P ++ SW ++I G + E I +F EM M K
Sbjct: 60 NSLMNAYVYCGLLADAKQIFHHTPYKNVVSWTILISGLAKNDCFVEAIDVFREMIMGNFK 119
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+ A I VL A + + K VH + G N+ + +L++ Y KF C+
Sbjct: 120 PN------AVTISSVLPAFANLGLIRIAKSVHCFWVRGGFEGNVFVETALVDMYSKFGCM 173
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
A +F + N V W A + G + + F M R+ + + YT S++ A
Sbjct: 174 GVARQLFESMSERNVVTWNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPAS 233
Query: 229 GGVDDDGNC---GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVF-ELIVDKK 284
V C G +H I++ G E+D++++ L+D+Y + DA RVF E+ V K
Sbjct: 234 LSV----GCLQVGTGIHGFIIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMSV--K 287
Query: 285 NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
++A+W ML G+ + A K + K GIQ
Sbjct: 288 DVAAWTLMLTGFSSGRHWDRAIK--HFNKMLGIQ 319
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 94/198 (47%), Gaps = 2/198 (1%)
Query: 137 KQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCRE 196
+Q+H + G + N L+ SL+N Y L DA +F N V WT I +
Sbjct: 41 QQIHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFHHTPYKNVVSWTILISGLAKN 100
Query: 197 GHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYV 256
F + + F+EM K N+ T SSVL A + + +H V+ G E + +V
Sbjct: 101 DCFVEAIDVFREMIMGNFKPNAVTISSVLPAFANLGLI-RIAKSVHCFWVRGGFEGNVFV 159
Query: 257 QCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASG 316
+ LVDMY K + A ++FE + ++N+ +WNA++ GY +G EA LM+ G
Sbjct: 160 ETALVDMYSKFGCMGVARQLFESM-SERNVVTWNAIVSGYSDHGFSEEAIDLFNLMRRKG 218
Query: 317 IQIQESLINDLRIACSSI 334
+ + I L A S+
Sbjct: 219 LLVDFYTIMSLIPASLSV 236
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 92/200 (46%), Gaps = 16/200 (8%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ ++VS +D A ++F EM ++D +W +M+ G+ + I F +M+ G
Sbjct: 264 LMDIYVSHNCVDDAHRVFSEMSVKDVAAWTLMLTGFSSGRHWDRAIKHFNKML----GIQ 319
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
L + ++ +L +C + ++ G++VH L K + NI + ++I+ Y LEDA
Sbjct: 320 NLKLDSIALMGILSSCSHSGALQQGRRVHALAIKTCFANNIFVGSAVIDMYANCGNLEDA 379
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
F + + V W A I N G+ + F +M + + TF SVL AC
Sbjct: 380 KRFFYGMGEKDVVCWNAMIAGNGMNGYGTDAIDLFLQMKGSGLDPDESTFVSVLYACS-- 437
Query: 232 DDDGNCGRQMHANIVKIGLE 251
HA +V GL+
Sbjct: 438 ----------HAGMVYEGLQ 447
>gi|6016735|gb|AAF01561.1|AC009325_31 hypothetical protein [Arabidopsis thaliana]
Length = 641
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 87/304 (28%), Positives = 144/304 (47%), Gaps = 21/304 (6%)
Query: 2 DNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQ 61
DN LP+ +K C ++ + ++K V + L + L+ M++ CG+
Sbjct: 40 DNFTLPVA-------LKACGELREVNYGEMIHGFVKKDVTLGSDLYVGSSLIYMYIKCGR 92
Query: 62 LDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI-I 120
+ A ++FDE+ D +W+ M+ G+ + + F M+ V P + +
Sbjct: 93 MIEALRMFDELEKPDIVTWSSMVSGFEKNGSPYQAVEFFRRMVMASD-----VTPDRVTL 147
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
+ ++ AC N LG+ VHG + + G S ++SL SL+N Y K R ++A +F +
Sbjct: 148 ITLVSACTKLSNSRLGRCVHGFVIRRGFSNDLSLVNSLLNCYAKSRAFKEAVNLFKMIAE 207
Query: 181 HNTVVWTAKI---VNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC 237
+ + W+ I V N VFND + G E N T VL+AC D
Sbjct: 208 KDVISWSTVIACYVQNGAAAEALLVFNDMMDDGTE---PNVATVLCVLQACAAAHDLEQ- 263
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYI 297
GR+ H ++ GLE++ V LVDMY KC +A VF I +K++ SW A++ G+
Sbjct: 264 GRKTHELAIRKGLETEVKVSTALVDMYMKCFSPEEAYAVFSRI-PRKDVVSWVALISGFT 322
Query: 298 RNGL 301
NG+
Sbjct: 323 LNGM 326
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/294 (26%), Positives = 138/294 (46%), Gaps = 19/294 (6%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L +N LL + A LF + +D SW+ +I YV E + +F +MM
Sbjct: 179 LSLVNSLLNCYAKSRAFKEAVNLFKMIAEKDVISWSTVIACYVQNGAAAEALLVFNDMMD 238
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
+ ++CVL+AC ++E G++ H L + G + ++ +L++ Y K
Sbjct: 239 DGTEPNVAT-----VLCVLQACAAAHDLEQGRKTHELAIRKGLETEVKVSTALVDMYMKC 293
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRE-RIKKNSYTFSSV 224
E+A VFS++ R + V W A I G H+ +F M E + ++ V
Sbjct: 294 FSPEEAYAVFSRIPRKDVVSWVALISGFTLNGMAHRSIEEFSIMLLENNTRPDAILMVKV 353
Query: 225 LKACG--GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282
L +C G + C H+ ++K G +S+ ++ LV++Y +C L +A +VF I
Sbjct: 354 LGSCSELGFLEQAKC---FHSYVIKYGFDSNPFIGASLVELYSRCGSLGNASKVFNGIAL 410
Query: 283 KKNIASWNAMLVGYIRNGLYVEATK----FLYLMKASGIQIQESLINDLRIACS 332
K + W +++ GY G++ + TK F +++K+S ++ E + ACS
Sbjct: 411 KDTVV-WTSLITGY---GIHGKGTKALETFNHMVKSSEVKPNEVTFLSILSACS 460
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 83/156 (53%), Gaps = 4/156 (2%)
Query: 186 WTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANI 245
W + + RE + +V F M R+ K +++T LKACG + + N G +H +
Sbjct: 9 WNTLLKSLSREKQWEEVLYHFSHMFRDEEKPDNFTLPVALKACGELREV-NYGEMIHGFV 67
Query: 246 VK-IGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVE 304
K + L SD YV L+ MY KC + +A R+F+ + +K +I +W++M+ G+ +NG +
Sbjct: 68 KKDVTLGSDLYVGSSLIYMYIKCGRMIEALRMFDEL-EKPDIVTWSSMVSGFEKNGSPYQ 126
Query: 305 ATKFLYLM-KASGIQIQESLINDLRIACSSISASKI 339
A +F M AS + + L AC+ +S S++
Sbjct: 127 AVEFFRRMVMASDVTPDRVTLITLVSACTKLSNSRL 162
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/238 (23%), Positives = 112/238 (47%), Gaps = 13/238 (5%)
Query: 72 MPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTM 131
M R W ++ ++E + F+ M + ++ P LKAC
Sbjct: 1 MTKRSLYQWNTLLKSLSREKQWEEVLYHFSHMFRDEEKPDNFTLPV-----ALKACGELR 55
Query: 132 NMELGKQVHGLLFK---LGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTA 188
+ G+ +HG + K LGS ++ + SLI Y K + +A +F +L++ + V W++
Sbjct: 56 EVNYGEMIHGFVKKDVTLGS--DLYVGSSLIYMYIKCGRMIEALRMFDELEKPDIVTWSS 113
Query: 189 KIVNNCREGHFHQVFNDFKEM-GRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVK 247
+ + G +Q F+ M + + T +++ AC + + GR +H +++
Sbjct: 114 MVSGFEKNGSPYQAVEFFRRMVMASDVTPDRVTLITLVSACTKLSNS-RLGRCVHGFVIR 172
Query: 248 IGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEA 305
G +D + L++ Y K R ++A +F++I +K ++ SW+ ++ Y++NG EA
Sbjct: 173 RGFSNDLSLVNSLLNCYAKSRAFKEAVNLFKMIAEK-DVISWSTVIACYVQNGAAAEA 229
>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g23330
gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 715
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 72/276 (26%), Positives = 143/276 (51%), Gaps = 13/276 (4%)
Query: 62 LDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIV 121
+D+ R++F+ MP +D S+ +I GY Y++ + + EM G L ++ +
Sbjct: 192 IDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREM-----GTTDLKPDSFTLS 246
Query: 122 CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH 181
VL +++ GK++HG + + G ++ + SL++ Y K +ED++ VFS+L
Sbjct: 247 SVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCR 306
Query: 182 NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQM 241
+ + W + + + G +++ F++M ++K + FSSV+ AC + + G+Q+
Sbjct: 307 DGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATL-HLGKQL 365
Query: 242 HANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI---ASWNAMLVGYIR 298
H +++ G S+ ++ LVDMY KC ++ A ++F D+ N+ SW A+++G+
Sbjct: 366 HGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIF----DRMNVLDEVSWTAIIMGHAL 421
Query: 299 NGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
+G EA MK G++ + + ACS +
Sbjct: 422 HGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHV 457
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 74/293 (25%), Positives = 129/293 (44%), Gaps = 43/293 (14%)
Query: 79 SWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQ 138
+W +I + D + + + + F EM + VFP+ VLK+C M++ G+
Sbjct: 72 AWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPS-----VLKSCTMMMDLRFGES 126
Query: 139 VHGLLFKLGSSRNISLTGSLINFYGKF------------------RCLEDAD-------- 172
VHG + +LG ++ +L+N Y K R D
Sbjct: 127 VHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETC 186
Query: 173 ----------FVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFS 222
VF + R + V + I + G + +EMG +K +S+T S
Sbjct: 187 IMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLS 246
Query: 223 SVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282
SVL D G+++H +++ G++SD Y+ LVDMY K + D+ERVF +
Sbjct: 247 SVLPIFSEYVDVIK-GKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYC 305
Query: 283 KKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
+ I SWN+++ GY++NG Y EA + M + ++ + + AC+ ++
Sbjct: 306 RDGI-SWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLA 357
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 82/314 (26%), Positives = 140/314 (44%), Gaps = 39/314 (12%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R I + + L+ M+ +++ + ++F + RD SW ++ GYV Y E +
Sbjct: 270 RKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALR 329
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
LF +M+ K + F + V+ AC + LGKQ+HG + + G NI + +L
Sbjct: 330 LFRQMVTAKVKPGAVAFSS-----VIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASAL 384
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
++ Y K ++ A +F ++ + V WTA I+ + GH H+ + F+EM R+ +K N
Sbjct: 385 VDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQ 444
Query: 219 YTFSSVLKAC---GGVDDD---------------------------GNCGR--QMHANIV 246
F +VL AC G VD+ G G+ + + I
Sbjct: 445 VAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFIS 504
Query: 247 KIGLESDEYVQCGLVDMYGKCRLLRDAERVFELI--VDKKNIASWNAMLVGYIRNGLYVE 304
K+ +E V L+ + L AE+V E I VD +N+ ++ M Y NG + E
Sbjct: 505 KMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVLMCNMYASNGRWKE 564
Query: 305 ATKFLYLMKASGIQ 318
K M+ G++
Sbjct: 565 MAKLRLRMRKKGLR 578
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 92/219 (42%), Gaps = 39/219 (17%)
Query: 136 GKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCR 195
KQ+H + S + S + +I+ Y + L +A +F LK + W + I
Sbjct: 24 AKQLHAQFIRTQSLSHTSAS-IVISIYTNLKLLHEALLLFKTLKSPPVLAWKSVIRCFTD 82
Query: 196 EGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEY 255
+ F + F EM + F SVLK+C + D G +H IV++G++ D Y
Sbjct: 83 QSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDL-RFGESVHGFIVRLGMDCDLY 141
Query: 256 VQCGLVDMYGK---------------------------------CRL---LRDAERVFEL 279
L++MY K C + + RVFE
Sbjct: 142 TGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIMPFGIDSVRRVFE- 200
Query: 280 IVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
++ +K++ S+N ++ GY ++G+Y +A + + M + ++
Sbjct: 201 VMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLK 239
>gi|449438472|ref|XP_004137012.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g03540-like [Cucumis sativus]
gi|449493172|ref|XP_004159212.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g03540-like [Cucumis sativus]
Length = 605
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 95/329 (28%), Positives = 155/329 (47%), Gaps = 18/329 (5%)
Query: 12 MYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDT--ARQLF 69
+Y L++ C + H+ K ++ N LL ++ G D+ R++F
Sbjct: 62 LYASLLQTCIKVDSFTRGRQFHAHVVKS-GLETDRFVGNSLLSLYFKLGS-DSLLTRRVF 119
Query: 70 DEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCVLKACV 128
D + ++D SWA MI GYV I LF +M+ + P + + V+KAC
Sbjct: 120 DGLFVKDVVSWASMITGYVREGKSGIAIELFWDMLDSG------IEPNGFTLSAVIKACS 173
Query: 129 CTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTA 188
N+ LGK HG++ + G N + SLI+ YG+ DA +F +L + V WT
Sbjct: 174 EIGNLVLGKCFHGVVVRRGFDSNPVILSSLIDMYGRNSVSSDARQLFDELLEPDPVCWTT 233
Query: 189 KIVNNCREGHFHQVFNDFKEMGR-ERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVK 247
I R + + F R R+ ++YTF SVL ACG + G ++HA ++
Sbjct: 234 VISAFTRNDLYEEALGFFYLKHRAHRLCPDNYTFGSVLTACGNLGRLRQ-GEEIHAKVIA 292
Query: 248 IGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATK 307
G + + LVDMYGKC + ++R+F+ + + +N SW+A+L Y NG Y +A
Sbjct: 293 YGFSGNVVTESSLVDMYGKCGAVEKSQRLFDRMSN-RNSVSWSALLAVYCHNGDYEKAVN 351
Query: 308 FLYLMKASGIQIQESLINDLRIACSSISA 336
MK + ++I AC+ ++A
Sbjct: 352 LFREMKEVDLYSFGTVIR----ACAGLAA 376
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 82/297 (27%), Positives = 141/297 (47%), Gaps = 12/297 (4%)
Query: 36 IRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQE 95
+R+ + P +L + L+ M+ ARQLFDE+ D W +I + Y+E
Sbjct: 189 VRRGFDSNPVIL--SSLIDMYGRNSVSSDARQLFDELLEPDPVCWTTVISAFTRNDLYEE 246
Query: 96 CITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLT 155
+ F + + H L + VL AC + G+++H + G S N+
Sbjct: 247 ALGFF---YLKHRAHRLCP-DNYTFGSVLTACGNLGRLRQGEEIHAKVIAYGFSGNVVTE 302
Query: 156 GSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIK 215
SL++ YGK +E + +F ++ N+V W+A + C G + + N F+EM +
Sbjct: 303 SSLVDMYGKCGAVEKSQRLFDRMSNRNSVSWSALLAVYCHNGDYEKAVNLFREMKEVDL- 361
Query: 216 KNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAER 275
Y+F +V++AC G+ G+++H ++ G D V+ LVD+Y KC + A R
Sbjct: 362 ---YSFGTVIRACAGLAAV-TPGKEIHCQYIRKGGWRDVIVESALVDLYAKCGCINFAYR 417
Query: 276 VFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
VF+ + +N+ +WN+M+ G+ +NG A + M GI+ L ACS
Sbjct: 418 VFDRM-PTRNLITWNSMIHGFAQNGSSGIAIQIFEAMIKEGIKPDCISFIGLLFACS 473
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/245 (24%), Positives = 112/245 (45%), Gaps = 11/245 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+ L+ M+ CG ++ +++LFD M R+ SW+ ++ Y DY++ + LF EM +
Sbjct: 303 SSLVDMYGKCGAVEKSQRLFDRMSNRNSVSWSALLAVYCHNGDYEKAVNLFREMKE---- 358
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ V++AC + GK++H + G R++ + +L++ Y K C+
Sbjct: 359 -----VDLYSFGTVIRACAGLAAVTPGKEIHCQYIRKGGWRDVIVESALVDLYAKCGCIN 413
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A VF ++ N + W + I + G F+ M +E IK + +F +L AC
Sbjct: 414 FAYRVFDRMPTRNLITWNSMIHGFAQNGSSGIAIQIFEAMIKEGIKPDCISFIGLLFACS 473
Query: 230 GVDDDGNCGRQMHANIVKIGLESD-EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
K G++ E+ C +VD+ G+ LL +AE + E + + +
Sbjct: 474 HTGLVDQARHYFDLMTGKYGIKPGVEHYNC-MVDLLGRAGLLEEAENLIENAECRNDSSL 532
Query: 289 WNAML 293
W +L
Sbjct: 533 WLVLL 537
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 79/152 (51%), Gaps = 10/152 (6%)
Query: 188 AKIVNNCREGHFHQVFNDFK--EMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANI 245
++I+ C+ G + + ++ RI K ++S+L+ C VD GRQ HA++
Sbjct: 29 SQILQFCKSGLLNDALHLLNSIDLYDSRINK-PLLYASLLQTCIKVDSFTR-GRQFHAHV 86
Query: 246 VKIGLESDEYVQCGLVDMY---GKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
VK GLE+D +V L+ +Y G LL RVF+ + K++ SW +M+ GY+R G
Sbjct: 87 VKSGLETDRFVGNSLLSLYFKLGSDSLL--TRRVFDGLF-VKDVVSWASMITGYVREGKS 143
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIACSSI 334
A + + M SGI+ ++ + ACS I
Sbjct: 144 GIAIELFWDMLDSGIEPNGFTLSAVIKACSEI 175
>gi|297737063|emb|CBI26264.3| unnamed protein product [Vitis vinifera]
Length = 583
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/265 (29%), Positives = 124/265 (46%), Gaps = 8/265 (3%)
Query: 36 IRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQE 95
I+ N P+ ++ N L+ M+ + ++A+ L P R +W +I G V +
Sbjct: 33 IKTLDNPLPSFIY-NHLVNMYSKLDRPNSAQLLLSLTPNRSVVTWTALIAGSVQNGRFTS 91
Query: 96 CITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLT 155
+ F+ M + FP C KA + +GKQVH L K G ++ +
Sbjct: 92 ALFHFSNMRRDSIQPNDFTFP-----CAFKASGSLRSPLVGKQVHALAVKAGQISDVFVG 146
Query: 156 GSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIK 215
S + Y K E+A +F ++ N W A + N+ EG + F E +E I+
Sbjct: 147 CSAFDMYSKAGLTEEARKMFDEMPERNIATWNAYLSNSVLEGRYDDALTAFIEARKEGIE 206
Query: 216 KNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAER 275
+ SSVL AC G+ G+ +H VK + + +V LVDMYGKC + DAER
Sbjct: 207 PTDFMVSSVLSACAGLSVL-EVGKSVHTLAVKACVVGNIFVGSALVDMYGKCGSIEDAER 265
Query: 276 VFELIVDKKNIASWNAMLVGYIRNG 300
F+ + ++N+ +WNAM+ GY G
Sbjct: 266 AFDEM-PERNLVTWNAMIGGYAHQG 289
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 74/247 (29%), Positives = 119/247 (48%), Gaps = 19/247 (7%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+ G + AR++FDEMP R+ +W + V Y + +T F E RK+G +
Sbjct: 152 MYSKAGLTEEARKMFDEMPERNIATWNAYLSNSVLEGRYDDALTAFIE--ARKEG----I 205
Query: 115 FPA-WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADF 173
P +++ VL AC +E+GK VH L K NI + +L++ YGK +EDA+
Sbjct: 206 EPTDFMVSSVLSACAGLSVLEVGKSVHTLAVKACVVGNIFVGSALVDMYGKCGSIEDAER 265
Query: 174 VFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEM--GRERIKKNSYTFSSVLKAC--- 228
F ++ N V W A I +G F EM G R+ N TF VL AC
Sbjct: 266 AFDEMPERNLVTWNAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPNYVTFVCVLSACSRA 325
Query: 229 GGVDDDGNCGRQMHANIV-KIGLESD-EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
G V N G ++ ++ + G+E E+ C +VD+ G+ ++ A + + + + +
Sbjct: 326 GSV----NVGMEIFESMRGRYGIEPGAEHYAC-VVDLLGRAGMVEQAYQFIKKMPIRPTV 380
Query: 287 ASWNAML 293
+ W A+L
Sbjct: 381 SVWGALL 387
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 103/217 (47%), Gaps = 3/217 (1%)
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFK-LGSSRNISLTGSLINFYGKFRCLEDADFVFSQL 178
+ ++++ V T LG+ H + K L + + L+N Y K A + S
Sbjct: 9 LASLVESAVSTQCSRLGRAAHAQIIKTLDNPLPSFIYNHLVNMYSKLDRPNSAQLLLSLT 68
Query: 179 KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCG 238
+ V WTA I + + G F F M R+ I+ N +TF KA G + G
Sbjct: 69 PNRSVVTWTALIAGSVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKASGSLRSP-LVG 127
Query: 239 RQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIR 298
+Q+HA VK G SD +V C DMY K L +A ++F+ + ++NIA+WNA L +
Sbjct: 128 KQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEM-PERNIATWNAYLSNSVL 186
Query: 299 NGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
G Y +A + GI+ + +++ + AC+ +S
Sbjct: 187 EGRYDDALTAFIEARKEGIEPTDFMVSSVLSACAGLS 223
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 62/140 (44%), Gaps = 7/140 (5%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ CG ++ A + FDEMP R+ +W MI GY +TLF EM
Sbjct: 250 LVDMYGKCGSIEDAERAFDEMPERNLVTWNAMIGGYAHQGQADMAVTLFDEMTCGSH--- 306
Query: 112 LLVFPAWI-IVCVLKACVCTMNMELGKQV-HGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
V P ++ VCVL AC ++ +G ++ + + G +++ G+ +E
Sbjct: 307 -RVAPNYVTFVCVLSACSRAGSVNVGMEIFESMRGRYGIEPGAEHYACVVDLLGRAGMVE 365
Query: 170 DA-DFVFSQLKRHNTVVWTA 188
A F+ R VW A
Sbjct: 366 QAYQFIKKMPIRPTVSVWGA 385
>gi|147855060|emb|CAN82371.1| hypothetical protein VITISV_027622 [Vitis vinifera]
Length = 697
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 82/285 (28%), Positives = 140/285 (49%), Gaps = 14/285 (4%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ G + ARQLF+ M R+ SW ++ GY D +E I LF M R+KG
Sbjct: 163 LVDMYSKFGCMGVARQLFESMSERNVVSWNAIVSGYSDHGFSEEAIDLFNLM--RRKG-- 218
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
L+ + I+ ++ A + +++G +HG + + G + + +L++ Y C++DA
Sbjct: 219 -LLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHIKTALMDIYVSHNCVDDA 277
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEM-GRERIKKNSYTFSSVLKAC-- 228
VFS++ + WT + H+ + F +M G + +K +S +L +C
Sbjct: 278 HRVFSEMFVKDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIVLMGILSSCSH 337
Query: 229 -GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
G + GR++HA +K ++ +V ++DMY C L DA+R F + +K++
Sbjct: 338 SGALQQ----GRRVHALAIKTCFANNIFVGSAVIDMYANCGNLEDAKRFF-YGMGEKDVV 392
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
WNAM+ G NG +A MK SG+ ES + ACS
Sbjct: 393 CWNAMIAGNGMNGYGTDAIDLFLQMKGSGLDPDESTFVSVLYACS 437
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 80/274 (29%), Positives = 128/274 (46%), Gaps = 19/274 (6%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEM-MKRKK 108
N L+ +V CG L A+Q+F P ++ SW ++I G + E I +F EM M K
Sbjct: 60 NSLMNAYVYCGLLADAKQIFHHTPCKNVVSWTILISGLAKNDCFVEAIDVFREMTMGNFK 119
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+ A I VL A + + K VH + G N+ + +L++ Y KF C+
Sbjct: 120 PN------AVTISSVLPAFANLGLIRIAKSVHCFWVRGGFEGNVFVETALVDMYSKFGCM 173
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
A +F + N V W A + G + + F M R+ + + YT S++ A
Sbjct: 174 GVARQLFESMSERNVVSWNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPAS 233
Query: 229 GGVDDDGNC---GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVF-ELIVDKK 284
V C G +H I++ G E+D++++ L+D+Y + DA RVF E+ V K
Sbjct: 234 LSV----GCLQVGTGIHGFIIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMFV--K 287
Query: 285 NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
++A+W ML G+ + A K + K GIQ
Sbjct: 288 DVAAWTLMLTGFSSGRHWDRAIK--HFNKMLGIQ 319
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 94/198 (47%), Gaps = 2/198 (1%)
Query: 137 KQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCRE 196
+Q+H + G + N L+ SL+N Y L DA +F N V WT I +
Sbjct: 41 QQIHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFHHTPCKNVVSWTILISGLAKN 100
Query: 197 GHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYV 256
F + + F+EM K N+ T SSVL A + + +H V+ G E + +V
Sbjct: 101 DCFVEAIDVFREMTMGNFKPNAVTISSVLPAFANLGLI-RIAKSVHCFWVRGGFEGNVFV 159
Query: 257 QCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASG 316
+ LVDMY K + A ++FE + ++N+ SWNA++ GY +G EA LM+ G
Sbjct: 160 ETALVDMYSKFGCMGVARQLFESM-SERNVVSWNAIVSGYSDHGFSEEAIDLFNLMRRKG 218
Query: 317 IQIQESLINDLRIACSSI 334
+ + I L A S+
Sbjct: 219 LLVDFYTIMSLIPASLSV 236
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 93/200 (46%), Gaps = 16/200 (8%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ ++VS +D A ++F EM ++D +W +M+ G+ + I F +M+ G
Sbjct: 264 LMDIYVSHNCVDDAHRVFSEMFVKDVAAWTLMLTGFSSGRHWDRAIKHFNKML----GIQ 319
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
L + +++ +L +C + ++ G++VH L K + NI + ++I+ Y LEDA
Sbjct: 320 NLKLDSIVLMGILSSCSHSGALQQGRRVHALAIKTCFANNIFVGSAVIDMYANCGNLEDA 379
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
F + + V W A I N G+ + F +M + + TF SVL AC
Sbjct: 380 KRFFYGMGEKDVVCWNAMIAGNGMNGYGTDAIDLFLQMKGSGLDPDESTFVSVLYACS-- 437
Query: 232 DDDGNCGRQMHANIVKIGLE 251
HA +V GL+
Sbjct: 438 ----------HAGMVYEGLQ 447
>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
Length = 672
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 83/289 (28%), Positives = 141/289 (48%), Gaps = 18/289 (6%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ + S G +++A+++FDE+P++D SW MI GY + +Y++ + LF EMMK
Sbjct: 147 LITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMKTN---- 202
Query: 112 LLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
V P + V+ AC + ++ELG+QVH + G N+ + +LI+ Y K +E
Sbjct: 203 --VKPDESTMATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIVNALIDLYSKCGEVET 260
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC-- 228
A + L + + W I + + F+EM R N T S+L AC
Sbjct: 261 ACELLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAH 320
Query: 229 -GGVDDDGNCGRQMHANIVK----IGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
G +D GR +H I K + + + ++ L+DMY KC + A +V +
Sbjct: 321 LGAID----IGRWIHVYIDKKLKGVVVTNASSLRTSLIDMYAKCGDIDAAPQVSDSSAFN 376
Query: 284 KNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+++++WNAM+ G+ +G A M+ +GI+ + L ACS
Sbjct: 377 RSLSTWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACS 425
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 78/312 (25%), Positives = 133/312 (42%), Gaps = 44/312 (14%)
Query: 62 LDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIV 121
L A +F+ +P + W +M G+ +D + L+ M+ FP
Sbjct: 25 LPYAISVFETIPEPNQLIWNIMFRGHALSSDPVSALKLYVVMISLGLLPNFFTFP----- 79
Query: 122 CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFS----- 176
+LK+C + + G+Q+HG + KLG ++ + SLI+ Y + LEDA VF
Sbjct: 80 FLLKSCAKSKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSHR 139
Query: 177 --------------------------QLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMG 210
++ + V W A I G++ + FKEM
Sbjct: 140 DVVSYTALITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMM 199
Query: 211 RERIKKNSYTFSSVLKAC---GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKC 267
+ +K + T ++V+ AC G ++ GRQ+H+ I G S+ + L+D+Y KC
Sbjct: 200 KTNVKPDESTMATVVSACAQSGSIE----LGRQVHSWINDHGFGSNLKIVNALIDLYSKC 255
Query: 268 RLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDL 327
+ A + E + +K ++ SWN ++ GY LY EA M SG + + +
Sbjct: 256 GEVETACELLEGLSNK-DVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSI 314
Query: 328 RIACSSISASKI 339
AC+ + A I
Sbjct: 315 LPACAHLGAIDI 326
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 69/280 (24%), Positives = 126/280 (45%), Gaps = 23/280 (8%)
Query: 27 AGAFELLNHIRKRVN---IKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVM 83
+G+ EL + +N L +N L+ ++ CG+++TA +L + + +D SW +
Sbjct: 220 SGSIELGRQVHSWINDHGFGSNLKIVNALIDLYSKCGEVETACELLEGLSNKDVISWNTL 279
Query: 84 IVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLL 143
I GY + Y+E + LF EM++ + + ++ +L AC +++G+ +H +
Sbjct: 280 IGGYTHMNLYKEALLLFQEMLRSGETPNDVT-----MLSILPACAHLGAIDIGRWIHVYI 334
Query: 144 FK----LGSSRNISLTGSLINFYGKFRCLEDADFVF-SQLKRHNTVVWTAKIVNNCREGH 198
K + + SL SLI+ Y K ++ A V S + W A I G
Sbjct: 335 DKKLKGVVVTNASSLRTSLIDMYAKCGDIDAAPQVSDSSAFNRSLSTWNAMIFGFAMHGR 394
Query: 199 FHQVFNDFKEMGRERIKKNSYTFSSVLKAC---GGVDDDGNCGRQMHA--NIVKIGLESD 253
+ F+ F M + I+ + TF +L AC G +D N R M NI
Sbjct: 395 ANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMRQDYNITP----KL 450
Query: 254 EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
E+ C ++D+ G L ++AE + + + + W ++L
Sbjct: 451 EHYGC-MIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLL 489
>gi|147770957|emb|CAN76247.1| hypothetical protein VITISV_023383 [Vitis vinifera]
Length = 820
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 157/310 (50%), Gaps = 19/310 (6%)
Query: 35 HIRKRVNIKPTLLFL-NRLLLMHVSCGQLDTARQLFD--EMPLRDFNSWAVMIVGYVDVA 91
H + +N +L FL N L+ ++ CG L+ A LF + +W +I
Sbjct: 165 HTQIIINNYTSLPFLFNNLINLYAKCGCLNQALLLFSITHHHFKTIVTWTSLITHLSHFN 224
Query: 92 DYQECITLFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSR 150
+ + ++LF +M R G +P + +L A TM + G+Q+H L+ K G
Sbjct: 225 MHLQALSLFNQM--RCSG----PYPNQFTFSSILSASAATMMVLHGQQLHSLIHKHGFDA 278
Query: 151 NISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMG 210
NI + +L++ Y K + A VF Q+ N V W + IV + + FK++
Sbjct: 279 NIFVGTALVDMYAKCADMHSAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVL 338
Query: 211 RER-IKKNSYTFSSVLKAC---GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGK 266
RE+ + N + SSVL AC GG+ N GRQ+H +VK GL YV L+DMY K
Sbjct: 339 REKTVIPNEVSVSSVLSACANMGGL----NFGRQVHGVVVKYGLVPLTYVMNSLMDMYFK 394
Query: 267 CRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLIND 326
CR + ++F+ + D +++ +WN +++G+++N + EA + ++M+ GI E+ +
Sbjct: 395 CRFFDEGVKLFQCVGD-RDVVTWNVLVMGFVQNDKFEEACNYFWVMRREGILPDEASFST 453
Query: 327 LRIACSSISA 336
+ + +S++A
Sbjct: 454 VLHSSASLAA 463
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 82/282 (29%), Positives = 135/282 (47%), Gaps = 8/282 (2%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ C + +A ++FD+MP R+ SW MIVG+ Y + +F ++++ K
Sbjct: 286 LVDMYAKCADMHSAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKT--- 342
Query: 112 LLVFPAWIIVC-VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
V P + V VL AC + G+QVHG++ K G + SL++ Y K R ++
Sbjct: 343 --VIPNEVSVSSVLSACANMGGLNFGRQVHGVVVKYGLVPLTYVMNSLMDMYFKCRFFDE 400
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
+F + + V W ++ + F + N F M RE I + +FS+VL +
Sbjct: 401 GVKLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSAS 460
Query: 231 VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWN 290
+ + G +H I+K+G + + L+ MY KC L DA +VFE I D N+ SW
Sbjct: 461 LAAL-HQGTAIHDQIIKLGYVKNMCILGSLITMYAKCGSLVDAYQVFEGIEDH-NVISWT 518
Query: 291 AMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
AM+ Y +G + + M + GI+ + ACS
Sbjct: 519 AMISAYQLHGCANQVIELFEHMLSEGIEPSHVTFVCVLSACS 560
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 74/258 (28%), Positives = 117/258 (45%), Gaps = 11/258 (4%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
+ + P +N L+ M+ C D +LF + RD +W V+++G+V ++E
Sbjct: 375 KYGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDVVTWNVLVMGFVQNDKFEEACN 434
Query: 99 LFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGS 157
F M R++G + P VL + + G +H + KLG +N+ + GS
Sbjct: 435 YFWVM--RREG----ILPDEASFSTVLHSSASLAALHQGTAIHDQIIKLGYVKNMCILGS 488
Query: 158 LINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKN 217
LI Y K L DA VF ++ HN + WTA I G +QV F+ M E I+ +
Sbjct: 489 LITMYAKCGSLVDAYQVFEGIEDHNVISWTAMISAYQLHGCANQVIELFEHMLSEGIEPS 548
Query: 218 SYTFSSVLKACG--GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAER 275
TF VL AC G ++G I + + Y C +VD+ G+ L +A+R
Sbjct: 549 HVTFVCVLSACSHTGRVEEGLAHFNSMKKIHDMNPGPEHYA-C-MVDLLGRAGWLDEAKR 606
Query: 276 VFELIVDKKNIASWNAML 293
E + K + W A+L
Sbjct: 607 FIESMPMKPTPSVWGALL 624
>gi|449521571|ref|XP_004167803.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
chloroplastic-like [Cucumis sativus]
Length = 817
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 84/289 (29%), Positives = 142/289 (49%), Gaps = 16/289 (5%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
+N L+ M+ C +DT+ ++FD MP +D SW MI +V E + LF EM K+
Sbjct: 352 MNALIAMYSRCNSIDTSFKIFDNMPEKDVVSWNTMISAFVQNGLNDEALMLFYEMKKQD- 410
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
L+ + + +L A N ++GKQ HG L + G + LI+ Y K +
Sbjct: 411 ----LMVDSVTVTALLSAASDLRNPDIGKQTHGYLLRNGIQFE-GMDSYLIDMYAKSGLI 465
Query: 169 EDADFVFSQLKRH--NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
E A VF + H + W + + + G Q F ++M +++ N T +S+L
Sbjct: 466 EAAQNVFEKSFSHERDQATWNSMMSGYTQNGLVDQAFLILRQMLDQKVMPNVVTLASILP 525
Query: 227 AC---GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
AC G +D G+Q+H ++ L+ + +V L+DMY K + AE VF ++
Sbjct: 526 ACNPSGYID----WGKQLHGFSIRNDLDQNVFVATALIDMYSKSGSIAHAENVFSK-ANE 580
Query: 284 KNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
K+I +++ M++GY ++G+ A + M+ SGIQ + + ACS
Sbjct: 581 KSIVTYSTMILGYGQHGMGESALFMFHRMQKSGIQPDAVTLVAVLSACS 629
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 89/346 (25%), Positives = 145/346 (41%), Gaps = 30/346 (8%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQL---------- 62
Y+ ++K C ++ + H R + P+ + N LL M+ C
Sbjct: 99 YSSVLKACADTRNLVVGKAVHAHFL-RCLMNPSRIVYNSLLNMYSMCSSTTPDGKMVSGY 157
Query: 63 ---DTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI 119
D R++FD M R +W +I YV Y E + F+ MMK + + P+ +
Sbjct: 158 SRCDLVRKVFDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMK------IGIKPSPV 211
Query: 120 -IVCVLKACVCTMNMELGKQVHGLLFKLGSS--RNISLTGSLINFYGKFRCLEDADFVFS 176
V V A + + VHG+L KLGS ++ + S I Y + CLE A VF
Sbjct: 212 SFVNVFPAFSSLGDFKNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEFAKKVFD 271
Query: 177 QLKRHNTVVWTAKI---VNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDD 233
NT VW I V N Q+F F+ + E + T S + A +
Sbjct: 272 NCLERNTEVWNTMISAFVQNNFSLEGIQLF--FQAVESEDAAIDEVTLLSAISAASHLQK 329
Query: 234 DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
Q+HA ++K + V L+ MY +C + + ++F+ + +K++ SWN M+
Sbjct: 330 -FELAEQLHAFVIKNVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNM-PEKDVVSWNTMI 387
Query: 294 VGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKI 339
+++NGL EA Y MK + + + L A S + I
Sbjct: 388 SAFVQNGLNDEALMLFYEMKKQDLMVDSVTVTALLSAASDLRNPDI 433
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 76/294 (25%), Positives = 133/294 (45%), Gaps = 27/294 (9%)
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI 119
GQL ARQLFD +P W +I+G V ++ + LF MK + ++
Sbjct: 42 GQLHLARQLFDALPRPSTVLWNTIIIGLV-CNNFPDEALLFYSNMKSSSPQVKC--DSYT 98
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFY--------------GKF 165
VLKAC T N+ +GK VH + + + + SL+N Y G
Sbjct: 99 YSSVLKACADTRNLVVGKAVHAHFLRCLMNPSRIVYNSLLNMYSMCSSTTPDGKMVSGYS 158
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
RC + VF +++ V W I R + + F M + IK + +F +V
Sbjct: 159 RC-DLVRKVFDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKIGIKPSPVSFVNVF 217
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLE--SDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
A + D N +H +VK+G E +D YV + MY + L A++VF+ ++
Sbjct: 218 PAFSSLGDFKNANV-VHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEFAKKVFDNCLE- 275
Query: 284 KNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISAS 337
+N WN M+ +++N +E + + ++ +++ I+++ + S+ISA+
Sbjct: 276 RNTEVWNTMISAFVQNNFSLEGIQLFF----QAVESEDAAIDEVTL-LSAISAA 324
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/253 (22%), Positives = 116/253 (45%), Gaps = 20/253 (7%)
Query: 52 LLLMHVSCGQLDTARQLFDEM--PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
L+ M+ G ++ A+ +F++ RD +W M+ GY + + +M+ +K
Sbjct: 455 LIDMYAKSGLIEAAQNVFEKSFSHERDQATWNSMMSGYTQNGLVDQAFLILRQMLDQK-- 512
Query: 110 HMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
V P + + +L AC + ++ GKQ+HG + +N+ + +LI+ Y K +
Sbjct: 513 ----VMPNVVTLASILPACNPSGYIDWGKQLHGFSIRNDLDQNVFVATALIDMYSKSGSI 568
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
A+ VFS+ + V ++ I+ + G F M + I+ ++ T +VL AC
Sbjct: 569 AHAENVFSKANEKSIVTYSTMILGYGQHGMGESALFMFHRMQKSGIQPDAVTLVAVLSAC 628
Query: 229 --GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIV---DK 283
G+ D+G + + I ++ + C + DM G+ + ++ +E ++ +K
Sbjct: 629 SYAGLVDEGLQIFESMRTVYNIQPSTEHF--CCVADMLGRAGRV---DKAYEFVIGLGEK 683
Query: 284 KNIAS-WNAMLVG 295
N+ W ++L
Sbjct: 684 GNVMEIWGSLLAA 696
>gi|297740904|emb|CBI31086.3| unnamed protein product [Vitis vinifera]
Length = 766
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 89/279 (31%), Positives = 135/279 (48%), Gaps = 9/279 (3%)
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI 119
G + AR LFD MP +D W VM+ GYV D+ +F EM + + + F
Sbjct: 196 GCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTF---- 251
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRN--ISLTGSLINFYGKFRCLEDADFVFSQ 177
CVL C + + G Q+HGL+ G + ++ T +LI+ Y K R +E A +F Q
Sbjct: 252 -ACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANTFALIDIYFKCRDVEMARKIFDQ 310
Query: 178 LKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC 237
+ VV TA I G + F+ + +ER++ NS T +SVL AC G+
Sbjct: 311 RTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAAL-TL 369
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYI 297
G+++H +I+K G YV ++DMY KC L A + F I DK + WN+M+
Sbjct: 370 GKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGISDKDAVC-WNSMITSCS 428
Query: 298 RNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+NG EA M +G + I+ AC+++ A
Sbjct: 429 QNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPA 467
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 149/337 (44%), Gaps = 15/337 (4%)
Query: 2 DNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQ 61
D+L + + + TC Q A A L+N I + +LL M+V CG
Sbjct: 43 DSLAPQLVSILQTCTDPSGLSQGRQAHAQMLVN------GIGYNGILGTKLLGMYVLCGA 96
Query: 62 LDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIV 121
A+ +F ++ L W MI G+ + + + + +M+ FP
Sbjct: 97 FLDAKNIFYQLRLWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPY---- 152
Query: 122 CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH 181
V+KAC ++ LG+ VH + +G ++ + SLI FY + C+ DA ++F ++
Sbjct: 153 -VIKACGGLNSVALGRVVHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSK 211
Query: 182 NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQM 241
+ V+W + + G + F EM R NS TF+ VL C + N G Q+
Sbjct: 212 DGVLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCAS-EIMINFGSQL 270
Query: 242 HANIVKIGLESDEYV--QCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRN 299
H +V GLE D V L+D+Y KCR + A ++F+ +I AM+ GY+ N
Sbjct: 271 HGLVVSSGLEMDSPVANTFALIDIYFKCRDVEMARKIFDQRT-PVDIVVCTAMISGYVLN 329
Query: 300 GLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
G+ A + + ++ + + AC+ ++A
Sbjct: 330 GMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAA 366
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/267 (25%), Positives = 130/267 (48%), Gaps = 7/267 (2%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ ++ C ++ AR++FD+ D MI GYV + +F +++ +
Sbjct: 291 LIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQER---- 346
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+ + + VL AC + LGK++HG + K G + + ++++ Y K L+ A
Sbjct: 347 -MRANSVTLASVLPACAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLA 405
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
F + + V W + I + + G + + F++MG K + + S+ L AC +
Sbjct: 406 HQTFIGISDKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANL 465
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
+ G+++HA +++ SD + + L+DMY KC L A RVF+ +++KN SWN+
Sbjct: 466 PAL-HYGKEIHAFMMRGAFRSDLFAESALIDMYSKCGNLDLACRVFD-TMEEKNEVSWNS 523
Query: 292 MLVGYIRNGLYVEATKFLYLMKASGIQ 318
++ Y +G ++ + M GIQ
Sbjct: 524 IIAAYGNHGRLKDSLNLFHGMLGDGIQ 550
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 101/222 (45%), Gaps = 10/222 (4%)
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
+V +L+ C + G+Q H + G N L L+ Y DA +F QL+
Sbjct: 49 LVSILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLR 108
Query: 180 RHNTVVWTAKIVNNCREGHFH-QVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCG 238
+ W I G F + FK +G + + YTF V+KACGG++ G
Sbjct: 109 LWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTL-PDKYTFPYVIKACGGLNSVA-LG 166
Query: 239 RQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIR 298
R +H I +G E D +V L+ Y + + DA +F+ + K + WN ML GY++
Sbjct: 167 RVVHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVL-WNVMLNGYVK 225
Query: 299 NGLYVEATKFLYLMKASGIQIQESLINDLRIACS-SISASKI 339
NG + AT M+ + E+ N + AC S+ AS+I
Sbjct: 226 NGDWDNATGVFMEMRRT-----ETNPNSVTFACVLSVCASEI 262
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 60/245 (24%), Positives = 101/245 (41%), Gaps = 17/245 (6%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+ CG+LD A Q F + +D W MI +E I LF R+ G
Sbjct: 395 MYAKCGRLDLAHQTFIGISDKDAVCWNSMITSCSQNGKPEEAIDLF-----RQMGMAGTK 449
Query: 115 FPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFV 174
+ I L AC + GK++H + + ++ +LI+ Y K L+ A V
Sbjct: 450 YDCVSISAALSACANLPALHYGKEIHAFMMRGAFRSDLFAESALIDMYSKCGNLDLACRV 509
Query: 175 FSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG--GVD 232
F ++ N V W + I G N F M + I+ + TF +++ ACG G
Sbjct: 510 FDTMEEKNEVSWNSIIAAYGNHGRLKDSLNLFHGMLGDGIQPDHVTFLAIISACGHAGQV 569
Query: 233 DDG----NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
D+G C + + ++ E+ C +VD++G+ L +A + + +
Sbjct: 570 DEGIHYFRCMTEELGIMARM-----EHYAC-MVDLFGRAGRLNEAFGMINSMPFSPDAGV 623
Query: 289 WNAML 293
W +L
Sbjct: 624 WGTLL 628
>gi|225469326|ref|XP_002268072.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Vitis vinifera]
Length = 590
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 102/329 (31%), Positives = 154/329 (46%), Gaps = 21/329 (6%)
Query: 9 TTDMYT--CLIKECT-FQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTA 65
DMYT ++K CT F G E ++ + ++ L N LL + CG+ A
Sbjct: 102 VPDMYTFPVVLKACTKFLGVQEG--EQVHGVAVKMGFLCDLYVQNSLLHFYSVCGKWGGA 159
Query: 66 RQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLK 125
++FDEM +RD SW +I GYV + E I LF +M +V V VL
Sbjct: 160 GRVFDEMLVRDVVSWTGLISGYVRTGLFDEAINLFLKMD--------VVPNVATFVSVLV 211
Query: 126 ACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVV 185
AC + +GK VHGL++K + + +L++ Y K CL +A +F +L + V
Sbjct: 212 ACGRMGYLSMGKGVHGLVYKRAFGIGLVVGNALVDMYVKCECLCEARKLFDELPDRDIVS 271
Query: 186 WTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC---GGVDDDGNCGRQMH 242
WT+ I + F +M ++ + +SVL AC G +D GR +
Sbjct: 272 WTSIISGLVQCKQPKDSLELFYDMQISGVEPDRIILTSVLSACASLGALD----YGRWVQ 327
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
I + G+E D ++ LVDMY KC + A +F I + +NI +WNA+L G +G
Sbjct: 328 EYIERQGIEWDIHIGTALVDMYAKCGCIEMALHIFNGIPN-RNIFTWNALLGGLAMHGHG 386
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIAC 331
EA K LM +GI+ E + AC
Sbjct: 387 HEALKHFELMIGAGIRPNEVTFLAILTAC 415
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 110/214 (51%), Gaps = 5/214 (2%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
VLKAC + ++ G+QVHG+ K+G ++ + SL++FY A VF ++ +
Sbjct: 111 VLKACTKFLGVQEGEQVHGVAVKMGFLCDLYVQNSLLHFYSVCGKWGGAGRVFDEMLVRD 170
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
V WT I R G F + N F +M + N TF SVL ACG + + G+ +H
Sbjct: 171 VVSWTGLISGYVRTGLFDEAINLFLKM---DVVPNVATFVSVLVACGRMGYL-SMGKGVH 226
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
+ K V LVDMY KC L +A ++F+ + D ++I SW +++ G ++
Sbjct: 227 GLVYKRAFGIGLVVGNALVDMYVKCECLCEARKLFDELPD-RDIVSWTSIISGLVQCKQP 285
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
++ + Y M+ SG++ ++ + AC+S+ A
Sbjct: 286 KDSLELFYDMQISGVEPDRIILTSVLSACASLGA 319
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/255 (28%), Positives = 116/255 (45%), Gaps = 12/255 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+V C L AR+LFDE+P RD SW +I G V ++ + LF +M
Sbjct: 242 NALVDMYVKCECLCEARKLFDELPDRDIVSWTSIISGLVQCKQPKDSLELFYDMQISG-- 299
Query: 110 HMLLVFPAWIIVC-VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
V P II+ VL AC ++ G+ V + + G +I + +L++ Y K C+
Sbjct: 300 ----VEPDRIILTSVLSACASLGALDYGRWVQEYIERQGIEWDIHIGTALVDMYAKCGCI 355
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
E A +F+ + N W A + GH H+ F+ M I+ N TF ++L AC
Sbjct: 356 EMALHIFNGIPNRNIFTWNALLGGLAMHGHGHEALKHFELMIGAGIRPNEVTFLAILTAC 415
Query: 229 ---GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
G V + + QM + + Y C ++D+ + LL +A + + +
Sbjct: 416 CHSGLVAEGRSYFYQMISQPFNFSPRLEHY-GC-MIDLLCRAGLLDEAYKFIRNMPLPPD 473
Query: 286 IASWNAMLVGYIRNG 300
+ W A+L NG
Sbjct: 474 VLIWGALLSACKANG 488
>gi|302771309|ref|XP_002969073.1| hypothetical protein SELMODRAFT_90996 [Selaginella moellendorffii]
gi|300163578|gb|EFJ30189.1| hypothetical protein SELMODRAFT_90996 [Selaginella moellendorffii]
Length = 810
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 86/262 (32%), Positives = 127/262 (48%), Gaps = 11/262 (4%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ MH C D AR++F + ++ SW MI Y E + LF M
Sbjct: 297 LVTMHGRCAMPDAARKIFASIERKNVVSWTTMIAAYAQSDRSDEAMELFHAMDLEGVRPS 356
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFK--LGSSRNIS--LTGSLINFYGKFRC 167
F + +V L + + + L + LGS I L ++++ YGK R
Sbjct: 357 EQTFVS--VVHALASSSSSRDELAALAAARSLEERALGSGLGIDGVLGNAMVDLYGKRRR 414
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
++A VF ++ +TV WTA I + G + F F+EM I+ + TF SVL+A
Sbjct: 415 PDEARGVFDAMRSRSTVAWTAMIQAYAQSGRREEAFALFREM---EIEPAATTFVSVLEA 471
Query: 228 CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
C G D + GR++H+ +V GLES+ +V L+DM+GKC A FE I D K I
Sbjct: 472 CAG-SSDLDAGREVHSAVVSRGLESEVFVGTALIDMFGKCGDCNAARSSFERIAD-KTIV 529
Query: 288 SWNAMLVGYIRNGLYVEATKFL 309
WNAML Y++NG +A + L
Sbjct: 530 PWNAMLAVYVQNGRPRDALELL 551
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 74/294 (25%), Positives = 131/294 (44%), Gaps = 24/294 (8%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLR-DFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
N ++ + G A LF EM L + SW MI Y +E + L+ M
Sbjct: 100 NIIIAANAQTGHGKKALHLFREMDLEGNVVSWTSMIRAYALSGQNREAVKLYKAMD---- 155
Query: 109 GHMLLVFP-AWIIVCVLKACVCTMNMELGKQVH--GLLFKLGSSRNISLTGSLINFYGKF 165
V P + + + +AC N+E +++ + GS R ++L +++ + K
Sbjct: 156 -----VTPNEYTLASIAEAC---ENLEEAREIETRAVDGGFGSVRAVAL--AIVGMFCKL 205
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRER-IKKNSYTFSSV 224
L+DA + N W I R + ++EM R ++ + T+ +
Sbjct: 206 GSLDDARRYLIRHDAKNVFCWNQLIAAQARSSSSSTAMDLYREMRRNHGVEPDCVTYLEL 265
Query: 225 LKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
LK C D GR++HA++++ G E DE V LV M+G+C + A ++F I ++K
Sbjct: 266 LKVC----SDWKLGRELHASVLEHGFEQDEVVSSALVTMHGRCAMPDAARKIFASI-ERK 320
Query: 285 NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASK 338
N+ SW M+ Y ++ EA + + M G++ E + A +S S+S+
Sbjct: 321 NVVSWTTMIAAYAQSDRSDEAMELFHAMDLEGVRPSEQTFVSVVHALASSSSSR 374
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 103/248 (41%), Gaps = 28/248 (11%)
Query: 63 DTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVC 122
D AR +FD M R +W MI Y +E LF EM + A V
Sbjct: 416 DEARGVFDAMRSRSTVAWTAMIQAYAQSGRREEAFALFREME--------IEPAATTFVS 467
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
VL+AC + +++ G++VH + G + + +LI+ +GK A F ++
Sbjct: 468 VLEACAGSSDLDAGREVHSAVVSRGLESEVFVGTALIDMFGKCGDCNAARSSFERIADKT 527
Query: 183 TVVWTAKI---VNNCREGHFHQVFNDFKEM--------------GRERIKKNSYTFSSVL 225
V W A + V N R ++ N + G + + TF +L
Sbjct: 528 IVPWNAMLAVYVQNGRPRDALELLNHGGTVNGRGGTVKLVNATRGTGGVTPDKITFVLLL 587
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEY-VQCGLVDMYGKCRLLRDAERVFELIVDKK 284
ACG + + GR +H + + L + + LV MY C L +A F I +K
Sbjct: 588 NACGALGEIA-VGRALHRDAIPGELLGESSCIGNALVAMYASCGSLEEARVAFRGI-QRK 645
Query: 285 NIASWNAM 292
++ASWNAM
Sbjct: 646 SLASWNAM 653
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/261 (23%), Positives = 113/261 (43%), Gaps = 16/261 (6%)
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI 119
G LD AR+ ++ W +I + + L+ EM +R G V P +
Sbjct: 206 GSLDDARRYLIRHDAKNVFCWNQLIAAQARSSSSSTAMDLYREM-RRNHG----VEPDCV 260
Query: 120 I-VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL 178
+ +LK C + +LG+++H + + G ++ ++ +L+ +G+ + A +F+ +
Sbjct: 261 TYLELLKVCS---DWKLGRELHASVLEHGFEQDEVVSSALVTMHGRCAMPDAARKIFASI 317
Query: 179 KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGN-- 236
+R N V WT I + + F M E ++ + TF SV+ A +
Sbjct: 318 ERKNVVSWTTMIAAYAQSDRSDEAMELFHAMDLEGVRPSEQTFVSVVHALASSSSSRDEL 377
Query: 237 ----CGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAM 292
R + + GL D + +VD+YGK R +A VF+ + + +A W AM
Sbjct: 378 AALAAARSLEERALGSGLGIDGVLGNAMVDLYGKRRRPDEARGVFDAMRSRSTVA-WTAM 436
Query: 293 LVGYIRNGLYVEATKFLYLMK 313
+ Y ++G EA M+
Sbjct: 437 IQAYAQSGRREEAFALFREME 457
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 83/204 (40%), Gaps = 34/204 (16%)
Query: 124 LKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNT 183
L+ C + ++ GK +H + G + L L+ YGK + + +AD VF + N
Sbjct: 37 LRECARSRDLSRGKSLHRQITGSGMGSDRFLANLLMEMYGKCQDVGNADAVFRSMGDRNV 96
Query: 184 VVWTAKIVNNCREGHFHQVFNDFKEM---------------------GRERIK------- 215
W I N + GH + + F+EM RE +K
Sbjct: 97 FSWNIIIAANAQTGHGKKALHLFREMDLEGNVVSWTSMIRAYALSGQNREAVKLYKAMDV 156
Query: 216 -KNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAE 274
N YT +S+ +AC +++ R++ V G S V +V M+ K L DA
Sbjct: 157 TPNEYTLASIAEACENLEE----AREIETRAVDGGFGSVRAVALAIVGMFCKLGSLDDAR 212
Query: 275 RVFELIVDKKNIASWNAMLVGYIR 298
R + + D KN+ WN ++ R
Sbjct: 213 R-YLIRHDAKNVFCWNQLIAAQAR 235
Score = 44.3 bits (103), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 57/311 (18%), Positives = 111/311 (35%), Gaps = 34/311 (10%)
Query: 7 PITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTAR 66
P T + +++ C D E+ + + R ++ + L+ M CG + AR
Sbjct: 460 PAAT-TFVSVLEACAGSSDLDAGREVHSAVVSR-GLESEVFVGTALIDMFGKCGDCNAAR 517
Query: 67 QLFDEMPLRDFNSWAVMIVGYVDVADYQECITLF------------AEMMKRKKGHMLLV 114
F+ + + W M+ YV ++ + L +++ +G +
Sbjct: 518 SSFERIADKTIVPWNAMLAVYVQNGRPRDALELLNHGGTVNGRGGTVKLVNATRGTGGVT 577
Query: 115 FPAWIIVCVLKACVCTMNMELGKQVHGLLFK---LGSSRNISLTGSLINFYGKFRCLEDA 171
V +L AC + +G+ +H LG S I +L+ Y LE+A
Sbjct: 578 PDKITFVLLLNACGALGEIAVGRALHRDAIPGELLGESSCIG--NALVAMYASCGSLEEA 635
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREG---HFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
F ++R + W A G + F EM + + + + +L C
Sbjct: 636 RVAFRGIQRKSLASWNAMAGAVAALGGSRSWSASMELFSEMELQGFNADEASLAGILSGC 695
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCG------LVDMYGKCRLLRDAERVFELIVD 282
+ G + + + + D V C +VDM G+ L +AE + +
Sbjct: 696 ------SHAGLKHQGWRIFVSMSDDFGVPCSAVHYVCIVDMLGRLGQLDEAESLLGCMPY 749
Query: 283 KKNIASWNAML 293
+ + W +L
Sbjct: 750 QPGLVGWMTLL 760
>gi|410109977|gb|AFV61068.1| pentatricopeptide repeat-containing protein 81, partial [Dipyrena
glaberrima]
Length = 305
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 82/290 (28%), Positives = 139/290 (47%), Gaps = 12/290 (4%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMP-LRDFNSWAVMIVGYVDVADYQEC-ITLFAEMMKR 106
LN + + CG + A+++FD RD +W M+ Y++ D +EC +F EM+++
Sbjct: 23 LNATITAYAECGCIQDAKRVFDSADGYRDLVTWNSMLAAYLE-HDLEECGFNIFLEMVRQ 81
Query: 107 KKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166
+ LV A+ + ++ AC LGK +HGL+ K G + + +LI Y K
Sbjct: 82 R-----LVMDAYTLSSIISACFGDSQQNLGKSLHGLVIKRGLEQVTQASNALIXMYLKSN 136
Query: 167 C--LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
+EDA +F + + V W + + G F++M + + + YTF++V
Sbjct: 137 SQNVEDALKIFEDIDVKDLVSWNTILTGLSQNGLSENALRLFQQMHLDHLXIDQYTFAAV 196
Query: 225 LKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
L++C + GRQ+H +VK G E +EYV L+ MY KC ++ DA FE K
Sbjct: 197 LRSCSDLAT-LXLGRQIHVLVVKSGFEGNEYVASALIFMYSKCGIIEDARESFE-ASHKD 254
Query: 285 NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
+ +WN+++ Y ++G A YLM +++ AC I
Sbjct: 255 SSVTWNSIIFAYAQHGQGKIALDLFYLMXEELVKLDHVTFVAALTACXHI 304
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 101/205 (49%), Gaps = 5/205 (2%)
Query: 134 ELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH-NTVVWTAKIVN 192
EL +Q+HG + K G ++ + I Y + C++DA VF + + V W + +
Sbjct: 2 ELTRQLHGKIMKRGLEXENTVLNATITAYAECGCIQDAKRVFDSADGYRDLVTWNSMLAA 61
Query: 193 NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLES 252
FN F EM R+R+ ++YT SS++ AC G D N G+ +H ++K GLE
Sbjct: 62 YLEHDLEECGFNIFLEMVRQRLVMDAYTLSSIISACFG-DSQQNLGKSLHGLVIKRGLEQ 120
Query: 253 DEYVQCGLVDMYGKC--RLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLY 310
L+ MY K + + DA ++FE I D K++ SWN +L G +NGL A +
Sbjct: 121 VTQASNALIXMYLKSNSQNVEDALKIFEDI-DVKDLVSWNTILTGLSQNGLSENALRLFQ 179
Query: 311 LMKASGIQIQESLINDLRIACSSIS 335
M + I + + +CS ++
Sbjct: 180 QMHLDHLXIDQYTFAAVLRSCSDLA 204
>gi|86438643|emb|CAJ26357.1| Selenium binding protein [Brachypodium sylvaticum]
Length = 624
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 89/332 (26%), Positives = 152/332 (45%), Gaps = 8/332 (2%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCG 60
+D+ L T +Y I C K+ A ++ H+ + N L+ ++ CG
Sbjct: 42 LDSGELAPTPRVYHAFITACAQSKNLDDARKIHGHLASS-RFEGDAFLDNSLIHLYCKCG 100
Query: 61 QLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWII 120
+ A ++FD+M +D SW +I GY E I L M+K + F +
Sbjct: 101 SVVEAHKVFDKMRKKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFAS--- 157
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
+LKA + +G Q+H L K ++ + +L++ Y + ++ A VF +L
Sbjct: 158 --LLKAAGAYADSGIGGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDS 215
Query: 181 HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQ 240
N V W A I R+G F EM R + +T+SS+ G+ G+
Sbjct: 216 KNGVSWNALISGFARKGDGETALMVFAEMQRNGFEATHFTYSSIFSGLAGIGALEQ-GKW 274
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
+HA++VK + +V ++DMY K + DA +VFE +++ K++ +WN+ML + + G
Sbjct: 275 VHAHMVKSRQKLTAFVGNTMLDMYAKSGSMIDARKVFERVLN-KDLVTWNSMLTAFAQYG 333
Query: 301 LYVEATKFLYLMKASGIQIQESLINDLRIACS 332
L EA M+ SGI + + + ACS
Sbjct: 334 LGKEAVSHFEEMRKSGIYLNQITFLCILTACS 365
>gi|224103989|ref|XP_002313273.1| predicted protein [Populus trichocarpa]
gi|222849681|gb|EEE87228.1| predicted protein [Populus trichocarpa]
Length = 680
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 91/286 (31%), Positives = 137/286 (47%), Gaps = 6/286 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N LLL + +CG L +++FDEM RD SW +I + Y E I LF EM R
Sbjct: 46 NTLLLFYGNCGGLKDVKRVFDEMLERDVVSWNSVIGVFSVHGFYAEAIHLFCEMNLRSGF 105
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+V IV VL C + G+Q+H + K G +++ +L++ YGK ++
Sbjct: 106 RPNMV----SIVSVLPVCAGLEDGVTGRQIHCYVVKTGLDSQVTVGNALVDVYGKCGYVK 161
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
D+ VF ++ N V W A I + F+ M +K NS TFSS+L
Sbjct: 162 DSRRVFDEISERNGVSWNAIITSLAYLERNQDALEMFRLMIDGGVKPNSVTFSSMLPVLV 221
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ + G+++H ++ GLESD +V L+DMY K A VF I +KNI SW
Sbjct: 222 ELKLF-DFGKEIHGFSLRFGLESDIFVANALIDMYAKSGRSLQASNVFNQI-GEKNIVSW 279
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
NAM+ + +N L + A + M+A G ++ AC+ I
Sbjct: 280 NAMVANFAQNRLELAAVDLVRQMQADGEIPNSVTFTNVLPACARIG 325
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 110/197 (55%), Gaps = 3/197 (1%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
VLKAC +++++ G+++HG++FKLG ++ + +L+ FYG L+D VF ++ +
Sbjct: 13 VLKACADSLSVQKGREIHGVVFKLGFDSDVFVGNTLLLFYGNCGGLKDVKRVFDEMLERD 72
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMG-RERIKKNSYTFSSVLKACGGVDDDGNCGRQM 241
V W + I G + + + F EM R + N + SVL C G+ +DG GRQ+
Sbjct: 73 VVSWNSVIGVFSVHGFYAEAIHLFCEMNLRSGFRPNMVSIVSVLPVCAGL-EDGVTGRQI 131
Query: 242 HANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGL 301
H +VK GL+S V LVD+YGKC ++D+ RVF+ I ++N SWNA++
Sbjct: 132 HCYVVKTGLDSQVTVGNALVDVYGKCGYVKDSRRVFDEI-SERNGVSWNAIITSLAYLER 190
Query: 302 YVEATKFLYLMKASGIQ 318
+A + LM G++
Sbjct: 191 NQDALEMFRLMIDGGVK 207
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/290 (26%), Positives = 139/290 (47%), Gaps = 10/290 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ ++ CG + +R++FDE+ R+ SW +I + Q+ + +F M+
Sbjct: 148 NALVDVYGKCGYVKDSRRVFDEISERNGVSWNAIITSLAYLERNQDALEMFRLMIDGGVK 207
Query: 110 HMLLVFPAWIIVCV-LKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+ F + + V V LK + GK++HG + G +I + +LI+ Y K
Sbjct: 208 PNSVTFSSMLPVLVELKL------FDFGKEIHGFSLRFGLESDIFVANALIDMYAKSGRS 261
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
A VF+Q+ N V W A + N + + ++M + NS TF++VL AC
Sbjct: 262 LQASNVFNQIGEKNIVSWNAMVANFAQNRLELAAVDLVRQMQADGEIPNSVTFTNVLPAC 321
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
+ G+++HA ++ G D +V L DMY KC L A RVF++ + ++ S
Sbjct: 322 ARIGFL-RPGKEIHARAIRTGSSVDLFVSNALTDMYAKCGCLNLARRVFKISL--RDEVS 378
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASK 338
+N +++GY + E+ + M G+++ + AC++++A K
Sbjct: 379 YNILIIGYSQTTNCSESLRLFLEMGIKGMKLDVVSYMGVISACANLAALK 428
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 81/287 (28%), Positives = 139/287 (48%), Gaps = 17/287 (5%)
Query: 35 HIRK-RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADY 93
H R R L N L M+ CG L+ AR++F ++ LRD S+ ++I+GY +
Sbjct: 334 HARAIRTGSSVDLFVSNALTDMYAKCGCLNLARRVF-KISLRDEVSYNILIIGYSQTTNC 392
Query: 94 QECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNIS 153
E + LF EM KG L V + V+ AC ++ GK+VHGL + ++
Sbjct: 393 SESLRLFLEM--GIKGMKLDVVS---YMGVISACANLAALKQGKEVHGLAVRKHLHTHLF 447
Query: 154 LTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRER 213
+ +L++FY K ++ A VF Q+ +T W + I+ G N F+ M +
Sbjct: 448 IANALLDFYIKCGRIDLAGKVFRQIPSRDTASWNSMILGYGMLGELTIAINLFEAMKEDG 507
Query: 214 IKKNSYTFSSVLKAC--GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLR 271
++ +S ++ +VL AC GG+ ++G + H + I Y C +VD+ G+ L+
Sbjct: 508 VEYDSVSYIAVLSACSHGGLVEEGKKYFE-HMQVQNIKPTQMHYA-C-MVDLLGRAGLIE 564
Query: 272 DAERVFELIVDKKNIASWNAMLVGYIRNGLYVE----ATKFLYLMKA 314
+A ++ E + + + W A+L G R Y+E A + L+ +K
Sbjct: 565 EAVKLIESLPIEPDANVWGALL-GACRIHGYIELAHWAAEHLFKLKP 610
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/294 (23%), Positives = 130/294 (44%), Gaps = 8/294 (2%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R ++ + N L+ M+ G+ A +F+++ ++ SW M+ + +
Sbjct: 238 RFGLESDIFVANALIDMYAKSGRSLQASNVFNQIGEKNIVSWNAMVANFAQNRLELAAVD 297
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
L +M + + F VL AC + GK++H + GSS ++ ++ +L
Sbjct: 298 LVRQMQADGEIPNSVTF-----TNVLPACARIGFLRPGKEIHARAIRTGSSVDLFVSNAL 352
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
+ Y K CL A VF ++ + V + I+ + + + F EMG + +K +
Sbjct: 353 TDMYAKCGCLNLARRVF-KISLRDEVSYNILIIGYSQTTNCSESLRLFLEMGIKGMKLDV 411
Query: 219 YTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE 278
++ V+ AC + G+++H V+ L + ++ L+D Y KC + A +VF
Sbjct: 412 VSYMGVISACANLAALKQ-GKEVHGLAVRKHLHTHLFIANALLDFYIKCGRIDLAGKVFR 470
Query: 279 LIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
I ++ ASWN+M++GY G A MK G++ + ACS
Sbjct: 471 QI-PSRDTASWNSMILGYGMLGELTIAINLFEAMKEDGVEYDSVSYIAVLSACS 523
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 56/92 (60%), Gaps = 2/92 (2%)
Query: 214 IKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDA 273
++ + +TF VLKAC GR++H + K+G +SD +V L+ YG C L+D
Sbjct: 3 VRLDDHTFPFVLKACAD-SLSVQKGREIHGVVFKLGFDSDVFVGNTLLLFYGNCGGLKDV 61
Query: 274 ERVFELIVDKKNIASWNAMLVGYIRNGLYVEA 305
+RVF+ +++ +++ SWN+++ + +G Y EA
Sbjct: 62 KRVFDEMLE-RDVVSWNSVIGVFSVHGFYAEA 92
>gi|52076596|dbj|BAD45498.1| hypothetical protein [Oryza sativa Japonica Group]
gi|218187337|gb|EEC69764.1| hypothetical protein OsI_00012 [Oryza sativa Indica Group]
Length = 810
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 90/283 (31%), Positives = 134/283 (47%), Gaps = 7/283 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N LL + C LD R+LFDEMP RD S+ V+I Y + LF EM +K G
Sbjct: 275 NSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREM--QKLG 332
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
V P ++ V + ++ +GKQ+H L LG + L +LI+ Y K L+
Sbjct: 333 FDRQVLPYATMLSVAGSLP---DVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLD 389
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A FS + + WTA I + G + F +M R ++ + TFSS++KA
Sbjct: 390 AAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASS 449
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ G GRQ+H+ +++ G +S + LVDMY KC L +A R F+ + ++ +I SW
Sbjct: 450 SLAMIG-LGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSI-SW 507
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
NA++ Y G A K M G + ACS
Sbjct: 508 NAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACS 550
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/288 (28%), Positives = 144/288 (50%), Gaps = 11/288 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N LL + G L AR++F EM +D ++ M++G + + + LFA M R+ G
Sbjct: 174 NTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAM--RRAG 231
Query: 110 HMLLVFPA--WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
PA + +L ++ LG QVH L+ + S N+ + SL++FY K C
Sbjct: 232 -----IPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDC 286
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
L+D +F ++ + V + I V F+EM + + ++++L
Sbjct: 287 LDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSV 346
Query: 228 CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
G + D + G+Q+HA +V +GL S++ + L+DMY KC +L A+ F +K I
Sbjct: 347 AGSLPD-VHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAI- 404
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
SW A++ GY++NG + EA + M+ +G++ + + + A SS++
Sbjct: 405 SWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLA 452
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 119/273 (43%), Gaps = 14/273 (5%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
LN +L + S G L A+ LF P R+ +W +M+ + + ++LF M+
Sbjct: 77 LNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEG- 135
Query: 109 GHMLLVFPAWIIVC-VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
V P + V VL CT+ +H K G ++ + +L++ Y K
Sbjct: 136 -----VIPDRVTVTTVLNLPGCTV-----PSLHPFAIKFGLDTHVFVCNTLLDAYCKHGL 185
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
L A VF ++ + V + A ++ +EG Q F M R I +TFSS+L
Sbjct: 186 LAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTV 245
Query: 228 CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
G+ G Q+HA +++ + +V L+D Y KC L D R+F+ + ++ N+
Sbjct: 246 AAGM-AHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNV- 303
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQ 320
S+N ++ Y N + M+ G Q
Sbjct: 304 SYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQ 336
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 118/269 (43%), Gaps = 18/269 (6%)
Query: 35 HIRKRVNIKPTLLFL-------NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGY 87
HI K+++ + LL L N L+ M+ CG LD A+ F + SW +I GY
Sbjct: 354 HIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGY 413
Query: 88 VDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLG 147
V ++E + LF++M R+ G L ++KA + LG+Q+H L + G
Sbjct: 414 VQNGQHEEALQLFSDM--RRAG---LRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSG 468
Query: 148 SSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFK 207
++ L++ Y K CL++A F ++ N++ W A I G F+
Sbjct: 469 YKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFE 528
Query: 208 EMGRERIKKNSYTFSSVLKACG--GVDDDGNCGRQMHANIVKIGLES-DEYVQCGLVDMY 264
M +S TF SVL AC G+ D+ C + H + + E+ C ++D
Sbjct: 529 GMLHCGFNPDSVTFLSVLAACSHNGLADE--CMKYFHLMKHQYSISPWKEHYAC-VIDTL 585
Query: 265 GKCRLLRDAERVFELIVDKKNIASWNAML 293
G+ +++ + K + W ++L
Sbjct: 586 GRVGCFSQVQKMLVEMPFKADPIIWTSIL 614
>gi|242078125|ref|XP_002443831.1| hypothetical protein SORBIDRAFT_07g002920 [Sorghum bicolor]
gi|241940181|gb|EES13326.1| hypothetical protein SORBIDRAFT_07g002920 [Sorghum bicolor]
Length = 688
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 80/274 (29%), Positives = 138/274 (50%), Gaps = 10/274 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEM-MKRKK 108
N +L ++ CG L AR+ FD MP R+ +W +M+ G VD + + LF EM + +
Sbjct: 144 NHVLRTYLECGMLAEARRAFDGMPDRNGVTWGIMMGGLVDRGQPRAALALFREMLLAEEA 203
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNIS---LTGSLINFYGKF 165
G P +V L+A + + G+Q+H + K G+ +++ L +L++ Y K
Sbjct: 204 GGDGDAPPPRSLVVALRAATASGSARAGQQLHCCVVKAGACGDVADRYLACALLDMYSKC 263
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
+++A VF L R + V W + + G + ++EM R R+ + +TFS++L
Sbjct: 264 GLIDEARRVFDGLPRASVVAWNSMLAAYVLHGRSEEALELYQEMCRSRVAMDQFTFSTML 323
Query: 226 KACGGVDDDG--NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
G G +Q HA +++ GL D LVD+Y K + DA VFE + +
Sbjct: 324 ---GVFSRLGLLEHAKQAHAGLIQRGLPLDIVGNTALVDLYCKWGRMEDARNVFERM-PR 379
Query: 284 KNIASWNAMLVGYIRNGLYVEATKFLYLMKASGI 317
+N+ SWNA++ GY +G+ +A + + A G+
Sbjct: 380 RNLISWNALIAGYGYHGMGDKAIEMFERLIAEGV 413
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 108/246 (43%), Gaps = 9/246 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL M+ CG +D AR++FD +P +W M+ YV +E + L+ EM + +
Sbjct: 256 LLDMYSKCGLIDEARRVFDGLPRASVVAWNSMLAAYVLHGRSEEALELYQEMCRSRVAMD 315
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
F + V +E KQ H L + G +I +L++ Y K+ +EDA
Sbjct: 316 QFTFSTMLGVFSRLGL-----LEHAKQAHAGLIQRGLPLDIVGNTALVDLYCKWGRMEDA 370
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--G 229
VF ++ R N + W A I G + F+ + E + N TF +VL AC
Sbjct: 371 RNVFERMPRRNLISWNALIAGYGYHGMGDKAIEMFERLIAEGVVPNHVTFLAVLNACRFS 430
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
G+ D G Q+ +++ + Y C +++++G+ LL +A + W
Sbjct: 431 GLVDKGKRIFQLMTENLRMKPRAMHYA-C-VIELFGREGLLDEAYSMIRRAPFTPTANMW 488
Query: 290 NAMLVG 295
A+L
Sbjct: 489 GALLTA 494
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 71/163 (43%), Gaps = 11/163 (6%)
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEM------GRERIKKNSYTF 221
L +A F + N V W + G F+EM G + +
Sbjct: 156 LAEARRAFDGMPDRNGVTWGIMMGGLVDRGQPRAALALFREMLLAEEAGGDGDAPPPRSL 215
Query: 222 SSVLKACGGVDDDGNCGRQMHANIVKIGL---ESDEYVQCGLVDMYGKCRLLRDAERVFE 278
L+A G+Q+H +VK G +D Y+ C L+DMY KC L+ +A RVF+
Sbjct: 216 VVALRA-ATASGSARAGQQLHCCVVKAGACGDVADRYLACALLDMYSKCGLIDEARRVFD 274
Query: 279 LIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQE 321
+ + ++ +WN+ML Y+ +G EA + M S + + +
Sbjct: 275 GL-PRASVVAWNSMLAAYVLHGRSEEALELYQEMCRSRVAMDQ 316
>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
Length = 571
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 87/285 (30%), Positives = 139/285 (48%), Gaps = 8/285 (2%)
Query: 48 FLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRK 107
F N LL M+ CG LD A +FD M +R +W +I Y E I LF EM +
Sbjct: 35 FCNTLLDMYAKCGVLDGAILVFDLMSVRTVVTWTSLIAAYAREGLSDEAIRLFHEM--DR 92
Query: 108 KGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
+G +F I VL AC C ++E GK VH + + NI + +L++ Y K
Sbjct: 93 EGVSPDIF---TITTVLHACACNGSLENGKDVHNYIRENDMQSNIFVCNALMDMYAKCGS 149
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
+EDA+ VF ++ + + W I + ++ + F +M E +K + T + +L A
Sbjct: 150 MEDANSVFLEMPVKDIISWNTMIGGYSKNSLPNEALSLFGDMVLE-MKPDGTTLACILPA 208
Query: 228 CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
C + G+++H +I++ G SD+ V LVDMY KC + A +F++I K++
Sbjct: 209 CASLASLDR-GKEVHGHILRNGFFSDQQVANALVDMYVKCGVPVLARLLFDMI-PTKDLI 266
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+W M+ GY +G A M+ +GI+ E + ACS
Sbjct: 267 TWTVMIAGYGMHGFGNNAITTFNEMRQAGIEPDEVSFISILYACS 311
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 98/189 (51%), Gaps = 8/189 (4%)
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
+V +L+AC ++ LG+ VHG K + +L++ Y K L+ A VF +
Sbjct: 1 MVSILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMS 60
Query: 180 RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC---GGVDDDGN 236
V WT+ I REG + F EM RE + + +T ++VL AC G +++
Sbjct: 61 VRTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLEN--- 117
Query: 237 CGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGY 296
G+ +H I + ++S+ +V L+DMY KC + DA VF L + K+I SWN M+ GY
Sbjct: 118 -GKDVHNYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVF-LEMPVKDIISWNTMIGGY 175
Query: 297 IRNGLYVEA 305
+N L EA
Sbjct: 176 SKNSLPNEA 184
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 69/292 (23%), Positives = 134/292 (45%), Gaps = 13/292 (4%)
Query: 8 ITTDMYT--CLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTA 65
++ D++T ++ C ++ N+IR+ +++ + N L+ M+ CG ++ A
Sbjct: 95 VSPDIFTITTVLHACACNGSLENGKDVHNYIREN-DMQSNIFVCNALMDMYAKCGSMEDA 153
Query: 66 RQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLK 125
+F EMP++D SW MI GY + E ++LF +M+ K + C+L
Sbjct: 154 NSVFLEMPVKDIISWNTMIGGYSKNSLPNEALSLFGDMVLEMKPD------GTTLACILP 207
Query: 126 ACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVV 185
AC +++ GK+VHG + + G + + +L++ Y K A +F + + +
Sbjct: 208 ACASLASLDRGKEVHGHILRNGFFSDQQVANALVDMYVKCGVPVLARLLFDMIPTKDLIT 267
Query: 186 WTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--GGVDDDGNCGRQMHA 243
WT I G + F EM + I+ + +F S+L AC G+ D+G +
Sbjct: 268 WTVMIAGYGMHGFGNNAITTFNEMRQAGIEPDEVSFISILYACSHSGLLDEGWRFFNVMQ 327
Query: 244 NIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
+ + + + Y C +VD+ + L A + + + + + W A+L G
Sbjct: 328 DECNVKPKLEHYA-C-IVDLLARSGKLAMAYKFIKSMPIEPDATIWGALLSG 377
>gi|302820510|ref|XP_002991922.1| hypothetical protein SELMODRAFT_134446 [Selaginella moellendorffii]
gi|300140308|gb|EFJ07033.1| hypothetical protein SELMODRAFT_134446 [Selaginella moellendorffii]
Length = 690
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 81/305 (26%), Positives = 145/305 (47%), Gaps = 12/305 (3%)
Query: 6 LPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTA 65
L + D+Y L++EC K + + HI T L N L+ M+ CG + A
Sbjct: 32 LDVDNDVYATLLRECERSKSLSQGRYIHAHILASGKSGKTFLG-NLLVRMYGKCGSIADA 90
Query: 66 RQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLK 125
++ FD++ ++ SW +M+ + D +++ I ++ M+ + F + +C
Sbjct: 91 KEAFDQIHRKNVFSWTIMLGAFADCGHHRQAIQIYHAMVLEGVRPDCVAFASIAGICSEL 150
Query: 126 ACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVV 185
C + GK +H + + G+ ++ + +L+ Y K ++ A VF ++K N +
Sbjct: 151 QC-----FQAGKAIHDCVLEQGAESDVIVANNLVTMYSKCGRIDGARCVFRRIKNKNPIS 205
Query: 186 WTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANI 245
W A I + G F E+ E + T KAC + D GR++HA
Sbjct: 206 WNAMIAAFAQCGDFASAL----ELYVEHPVPDKITLILAAKACASLGDLDR-GREIHARA 260
Query: 246 VKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE-LIVDKKNIASWNAMLVGYIRNGLYVE 304
V++GLESD V L+ MYGKC + DA+R+F+ L +++ SWN+++ YI G+ +
Sbjct: 261 VELGLESDLLVANSLIGMYGKCYCVGDAKRLFDGLEAKNRDVISWNSIIAAYILAGMSSQ 320
Query: 305 ATKFL 309
A +
Sbjct: 321 ALELF 325
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 89/334 (26%), Positives = 148/334 (44%), Gaps = 46/334 (13%)
Query: 35 HIRK-RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFD--EMPLRDFNSWAVMIVGYVDVA 91
H R + ++ LL N L+ M+ C + A++LFD E RD SW +I Y+
Sbjct: 257 HARAVELGLESDLLVANSLIGMYGKCYCVGDAKRLFDGLEAKNRDVISWNSIIAAYILAG 316
Query: 92 DYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVH----------- 140
+ + LF E M + + + ++ AC ++E G+ +H
Sbjct: 317 MSSQALELFRERMDVEPNRITFI-------ALIDACSTLCDLEQGRWIHERIRSSEFARE 369
Query: 141 -----GLLFKLGSSRNI--------------SLTGSLINFYGKFRCLEDADFVFSQLKRH 181
GLL +I +L SL+ Y KF C+ DA VFS ++
Sbjct: 370 VAVENGLLLMYAKCGSIEEAMAIFESMEGRRTLATSLVIMYCKFGCVADAMAVFSGMRSR 429
Query: 182 NTVVWTAKIVNNCREGHFH-QVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDG--NCG 238
+ V WTA I ++ H + + F +M + K + TF+SVL G + G + G
Sbjct: 430 DVVAWTAMITAFSQQEHTSMEAVDYFCQMDLDGSKPDEVTFASVL---GSIARLGLLSRG 486
Query: 239 RQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIR 298
R +H +++ G +SD V L+DMY KC L DA+R F+ + +N+ SWNAM+ +
Sbjct: 487 RSVHCDVLACGFQSDVVVGTALLDMYSKCGSLIDAKRAFDDLGGSRNLVSWNAMIAAMAK 546
Query: 299 NGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+G + + M G++ + ++ CS
Sbjct: 547 HGDWSSGFELYRAMILEGVRPNDVTFTNMLFLCS 580
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 89/203 (43%), Gaps = 8/203 (3%)
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
GH L + +L+ C + ++ G+ +H + G S L L+ YGK +
Sbjct: 28 GHKDLDVDNDVYATLLRECERSKSLSQGRYIHAHILASGKSGKTFLGNLLVRMYGKCGSI 87
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
DA F Q+ R N WT + GH Q + M E ++ + F+S+ C
Sbjct: 88 ADAKEAFDQIHRKNVFSWTIMLGAFADCGHHRQAIQIYHAMVLEGVRPDCVAFASIAGIC 147
Query: 229 GGVDDDGNC---GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
+ C G+ +H +++ G ESD V LV MY KC + A VF I +K
Sbjct: 148 SEL----QCFQAGKAIHDCVLEQGAESDVIVANNLVTMYSKCGRIDGARCVFRRIKNKNP 203
Query: 286 IASWNAMLVGYIRNGLYVEATKF 308
I SWNAM+ + + G + A +
Sbjct: 204 I-SWNAMIAAFAQCGDFASALEL 225
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 95/228 (41%), Gaps = 10/228 (4%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQ-ECITLFAEMMKRKKGH 110
L++M+ G + A +F M RD +W MI + E + F +M
Sbjct: 406 LVIMYCKFGCVADAMAVFSGMRSRDVVAWTAMITAFSQQEHTSMEAVDYFCQMDLDGSKP 465
Query: 111 MLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
+ F + VL + + G+ VH + G ++ + +L++ Y K L D
Sbjct: 466 DEVTFAS-----VLGSIARLGLLSRGRSVHCDVLACGFQSDVVVGTALLDMYSKCGSLID 520
Query: 171 ADFVFSQLK-RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A F L N V W A I + G + F ++ M E ++ N TF+++L C
Sbjct: 521 AKRAFDDLGGSRNLVSWNAMIAAMAKHGDWSSGFELYRAMILEGVRPNDVTFTNMLFLCS 580
Query: 230 -GVDDDGNCG--RQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAE 274
G D CG + +++ G++ C +VD+ G+ L +AE
Sbjct: 581 HGGGGDRECGIWDACASIVLEFGVKITPDHHCSIVDVLGRSGRLEEAE 628
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYI 297
GR +HA+I+ G ++ LV MYGKC + DA+ F+ I +KN+ SW ML +
Sbjct: 55 GRYIHAHILASGKSGKTFLGNLLVRMYGKCGSIADAKEAFDQI-HRKNVFSWTIMLGAFA 113
Query: 298 RNGLYVEATKFLYLMKASGIQ 318
G + +A + + M G++
Sbjct: 114 DCGHHRQAIQIYHAMVLEGVR 134
>gi|359492976|ref|XP_002283668.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Vitis vinifera]
Length = 762
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 82/292 (28%), Positives = 149/292 (51%), Gaps = 10/292 (3%)
Query: 8 ITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQ 67
+ + Y +++EC +K + A ++ HI K K L + L+ ++ CG ++TAR+
Sbjct: 67 VESAFYVPILQECIDKKLVSDAQKIHAHIVKTGAHKDAFL-MTFLVNVYAKCGTMETARK 125
Query: 68 LFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPA-WIIVCVLKA 126
+FDE+P R+ SW ++ GYV + + + +F EM++ +P + + L A
Sbjct: 126 VFDELPRRNVVSWTTLMTGYVHDSKPELAVQVFREMLEAG------AYPTNYTLGTALSA 179
Query: 127 CVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVW 186
+ ELGKQ+HG K + S+ SL + Y K LE A F +++ N + W
Sbjct: 180 SSDLHSKELGKQIHGYSIKYRIEFDASIGNSLCSLYSKCGSLECAVKAFRRIRDKNVISW 239
Query: 187 TAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIV 246
T I G F EM E ++ N +T +S L C V + G Q+H+ +
Sbjct: 240 TTVISAWGDNGEAATGLQFFVEMLSECVEPNEFTLTSALSLC-CVMQSLDIGTQIHSLTI 298
Query: 247 KIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIR 298
K+G ES+ ++ ++ +Y KC + +A+++F+ + + ++ +WNAM+ G+ R
Sbjct: 299 KLGFESNLPIKNSIMYLYLKCGWIHEAKKLFDEM-ETISLVTWNAMIAGHAR 349
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 79/295 (26%), Positives = 136/295 (46%), Gaps = 20/295 (6%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L ++ CG L+ A + F + ++ SW +I + D + + F EM+
Sbjct: 209 NSLCSLYSKCGSLECAVKAFRRIRDKNVISWTTVISAWGDNGEAATGLQFFVEMLSE--- 265
Query: 110 HMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
V P + + L C ++++G Q+H L KLG N+ + S++ Y K +
Sbjct: 266 ---CVEPNEFTLTSALSLCCVMQSLDIGTQIHSLTIKLGFESNLPIKNSIMYLYLKCGWI 322
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHF-------HQ----VFNDFKEMGRERIKKN 217
+A +F +++ + V W A I + R F HQ + F ++ R +K +
Sbjct: 323 HEAKKLFDEMETISLVTWNAMIAGHARMMDFAKDDLAAHQCGTEALSIFLKLNRSGMKPD 382
Query: 218 SYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVF 277
+TFSSVL C + G Q+HA +K G SD V LV+MY KC + A + F
Sbjct: 383 LFTFSSVLSVCSSLVALEQ-GEQVHAQTIKTGFLSDVVVGTALVNMYNKCGSIERASKAF 441
Query: 278 ELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+ + + + SW +M+ GY +NG +A M+ +G++ + + ACS
Sbjct: 442 -VEMSIRTLISWTSMITGYAQNGQPQQALLLFEDMRLAGVRPNKITFVGVLSACS 495
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 121/270 (44%), Gaps = 20/270 (7%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYV--------DV 90
++ + L N ++ +++ CG + A++LFDEM +W MI G+ D+
Sbjct: 299 KLGFESNLPIKNSIMYLYLKCGWIHEAKKLFDEMETISLVTWNAMIAGHARMMDFAKDDL 358
Query: 91 ADYQ---ECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLG 147
A +Q E +++F ++ + L F VL C + +E G+QVH K G
Sbjct: 359 AAHQCGTEALSIFLKLNRSGMKPDLFTF-----SSVLSVCSSLVALEQGEQVHAQTIKTG 413
Query: 148 SSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFK 207
++ + +L+N Y K +E A F ++ + WT+ I + G Q F+
Sbjct: 414 FLSDVVVGTALVNMYNKCGSIERASKAFVEMSIRTLISWTSMITGYAQNGQPQQALLLFE 473
Query: 208 EMGRERIKKNSYTFSSVLKAC--GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYG 265
+M ++ N TF VL AC G+ D+ QM N KI D Y C L+DM+
Sbjct: 474 DMRLAGVRPNKITFVGVLSACSHAGMVDEALDYFQMMKNEYKITPVMDHYA-C-LIDMFV 531
Query: 266 KCRLLRDAERVFELIVDKKNIASWNAMLVG 295
+ L +A + + + N W+ ++ G
Sbjct: 532 RLGRLDEAFDFIKEMDLEPNEFIWSILIAG 561
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 102/241 (42%), Gaps = 12/241 (4%)
Query: 92 DYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRN 151
D++E ++ E K + V +L+ C+ + +++H + K G+ ++
Sbjct: 53 DFREALSFIREGTKVESA---------FYVPILQECIDKKLVSDAQKIHAHIVKTGAHKD 103
Query: 152 ISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGR 211
L L+N Y K +E A VF +L R N V WT + + F+EM
Sbjct: 104 AFLMTFLVNVYAKCGTMETARKVFDELPRRNVVSWTTLMTGYVHDSKPELAVQVFREMLE 163
Query: 212 ERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLR 271
+YT + L A + G+Q+H +K +E D + L +Y KC L
Sbjct: 164 AGAYPTNYTLGTALSASSDLHSK-ELGKQIHGYSIKYRIEFDASIGNSLCSLYSKCGSLE 222
Query: 272 DAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQE-SLINDLRIA 330
A + F I D KN+ SW ++ + NG +F M + ++ E +L + L +
Sbjct: 223 CAVKAFRRIRD-KNVISWTTVISAWGDNGEAATGLQFFVEMLSECVEPNEFTLTSALSLC 281
Query: 331 C 331
C
Sbjct: 282 C 282
>gi|356506811|ref|XP_003522169.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Glycine max]
Length = 751
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 80/290 (27%), Positives = 139/290 (47%), Gaps = 6/290 (2%)
Query: 44 PTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEM 103
P N L ++ CG+LD +LFD+M R+ SW +I G+ + +QE ++ F +M
Sbjct: 108 PNTFLSNHFLNLYSKCGELDYTIKLFDKMSQRNMVSWTSIITGFAHNSRFQEALSSFCQM 167
Query: 104 MKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYG 163
R +G + F + VL+AC ++ G QVH L+ K G + + +L + Y
Sbjct: 168 --RIEGEIATQFA---LSSVLQACTSLGAIQFGTQVHCLVVKCGFGCELFVGSNLTDMYS 222
Query: 164 KFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSS 223
K L DA F ++ + V+WT+ I + G F + + +M + + + + S
Sbjct: 223 KCGELSDACKAFEEMPCKDAVLWTSMIDGFVKNGDFKKALTAYMKMVTDDVFIDQHVLCS 282
Query: 224 VLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
L AC + + G+ +HA I+K+G E + ++ L DMY K + A VF++ D
Sbjct: 283 TLSACSAL-KASSFGKSLHATILKLGFEYETFIGNALTDMYSKSGDMVSASNVFQIHSDC 341
Query: 284 KNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSS 333
+I S A++ GY+ +A ++ GI+ E L AC++
Sbjct: 342 ISIVSLTAIIDGYVEMDQIEKALSTFVDLRRRGIEPNEFTFTSLIKACAN 391
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 99/208 (47%), Gaps = 2/208 (0%)
Query: 130 TMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAK 189
T + GKQ+H +L + G N L+ +N Y K L+ +F ++ + N V WT+
Sbjct: 88 TKELNKGKQLHAMLIRGGCLPNTFLSNHFLNLYSKCGELDYTIKLFDKMSQRNMVSWTSI 147
Query: 190 IVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIG 249
I F + + F +M E + SSVL+AC + G Q+H +VK G
Sbjct: 148 ITGFAHNSRFQEALSSFCQMRIEGEIATQFALSSVLQACTSLGAI-QFGTQVHCLVVKCG 206
Query: 250 LESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFL 309
+ +V L DMY KC L DA + FE + K + W +M+ G+++NG + +A
Sbjct: 207 FGCELFVGSNLTDMYSKCGELSDACKAFEEMPCKDAVL-WTSMIDGFVKNGDFKKALTAY 265
Query: 310 YLMKASGIQIQESLINDLRIACSSISAS 337
M + I + ++ ACS++ AS
Sbjct: 266 MKMVTDDVFIDQHVLCSTLSACSALKAS 293
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/250 (22%), Positives = 112/250 (44%), Gaps = 16/250 (6%)
Query: 50 NRLLLMHVSCGQLDTARQLFD-EMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
N L M+ G + +A +F S +I GYV++ ++ ++ F ++ +R
Sbjct: 316 NALTDMYSKSGDMVSASNVFQIHSDCISIVSLTAIIDGYVEMDQIEKALSTFVDLRRRGI 375
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
F + I KAC +E G Q+HG + K R+ ++ +L++ YGK
Sbjct: 376 EPNEFTFTSLI-----KACANQAKLEHGSQLHGQVVKFNFKRDPFVSSTLVDMYGKCGLF 430
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+ + +F +++ + + W + + G F M +K N+ TF ++LK C
Sbjct: 431 DHSIQLFDEIENPDEIAWNTLVGVFSQHGLGRNAIETFNGMIHRGLKPNAVTFVNLLKGC 490
Query: 229 ---GGVDDDGNCGRQMHANIVKIG--LESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
G V+D G +++ KI + +E+ C ++D+ G+ L++AE + +
Sbjct: 491 SHAGMVED----GLNYFSSMEKIYGVVPKEEHYSC-VIDLLGRAGKLKEAEDFINNMPFE 545
Query: 284 KNIASWNAML 293
N+ W + L
Sbjct: 546 PNVFGWCSFL 555
>gi|357477865|ref|XP_003609218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355510273|gb|AES91415.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1134
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 79/288 (27%), Positives = 141/288 (48%), Gaps = 7/288 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ C +D A +F MP +D SW MI G ++E ++ F MKR
Sbjct: 495 NALVNMYGKCTAIDNACSVFQLMPSKDTVSWNSMISGLDHNERFEEAVSCF-HTMKRNG- 552
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+V + ++ L +C + LG+Q+HG FK G ++S++ +L+ Y + +
Sbjct: 553 ---MVPSNFSVISTLSSCSSLGWLTLGRQIHGEGFKWGLDLDVSVSNALLTLYAETDSIN 609
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCR-EGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+ VF Q+ ++ V W + I + E Q F EM + + N TF ++L A
Sbjct: 610 ECQKVFFQMPEYDQVSWNSFIGALAKYEASVLQALKYFLEMMQAGWRPNRVTFINILAAV 669
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
G G Q+HA I+K + D ++ L+ YGKC + D E +F + ++++ S
Sbjct: 670 SSFSVLG-LGHQIHALILKYSVADDNAIENALLAFYGKCEQMEDCEIIFSRMSERRDEVS 728
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
WN+M+ GY+ +G+ +A ++ M G ++ + AC+S++
Sbjct: 729 WNSMISGYLHSGILHKAMDLVWPMMQRGQKLDGFTFATVLSACASVAT 776
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 87/287 (30%), Positives = 137/287 (47%), Gaps = 9/287 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDV-ADYQECITLFAEMMKRKK 108
N LL ++ ++ +++F +MP D SW I A + + F EMM+
Sbjct: 596 NALLTLYAETDSINECQKVFFQMPEYDQVSWNSFIGALAKYEASVLQALKYFLEMMQAGW 655
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+ F + +L A + LG Q+H L+ K + + ++ +L+ FYGK +
Sbjct: 656 RPNRVTF-----INILAAVSSFSVLGLGHQIHALILKYSVADDNAIENALLAFYGKCEQM 710
Query: 169 EDADFVFSQL-KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
ED + +FS++ +R + V W + I G H+ + M + K + +TF++VL A
Sbjct: 711 EDCEIIFSRMSERRDEVSWNSMISGYLHSGILHKAMDLVWPMMQRGQKLDGFTFATVLSA 770
Query: 228 CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
C V G ++HA V+ LESD V LVDMY KC + A R FEL+ +NI
Sbjct: 771 CASVATLER-GMEVHACAVRACLESDVVVGSALVDMYAKCGKIDYASRFFELM-PVRNIY 828
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
SWN+M+ GY R+G +A K MK G + ACS +
Sbjct: 829 SWNSMISGYARHGHGQKALKIFTRMKQHGQSPDHVTFVGVLSACSHV 875
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 83/279 (29%), Positives = 133/279 (47%), Gaps = 20/279 (7%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
+ F N L+ ++V G L +AR+LFDEMP ++ SW+ +I GY E +LF ++
Sbjct: 175 VFFCNTLINIYVRIGNLVSARKLFDEMPQKNLVSWSCLISGYTQNRMPDEACSLFKGVIS 234
Query: 106 RKKGHMLLVFPAWIIVCVLKAC--VCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYG 163
L+ + + L+AC + ++LG Q+H + KL ++ L+ L++ Y
Sbjct: 235 SG-----LLPNHFAVGSALRACQQCGSTGIKLGMQIHAFICKLPCVSDMILSNVLMSMYS 289
Query: 164 KFR-CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRE----RIKKNS 218
++DA VF ++K N+V W + I CR G F F M E ++ N
Sbjct: 290 DCSGSIDDAHRVFDEIKFRNSVTWNSIISVYCRRGDAVSAFKLFSVMQMEGVELNLRPNE 349
Query: 219 YTFSSVLKACGGVDDDGNCG----RQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAE 274
YT S++ A + D CG QM I K G D YV LV+ + + L+ A+
Sbjct: 350 YTLCSLVTAACSLAD---CGLVLLEQMLTRIEKSGFLRDLYVGSALVNGFARYGLMDCAK 406
Query: 275 RVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMK 313
+F+ + D +N + N ++VG R EA K MK
Sbjct: 407 MIFKQMYD-RNAVTMNGLMVGLARQHQGEEAAKVFKEMK 444
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 68/282 (24%), Positives = 126/282 (44%), Gaps = 14/282 (4%)
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI 119
G +D A+ +F +M R+ + ++VG +E +F EM L+ +
Sbjct: 400 GLMDCAKMIFKQMYDRNAVTMNGLMVGLARQHQGEEAAKVFKEMKD------LVEINSES 453
Query: 120 IVCVLKACVCTMNMELGK----QVHGLLFKLG-SSRNISLTGSLINFYGKFRCLEDADFV 174
+V +L N++ GK +VH LF+ G IS+ +L+N YGK +++A V
Sbjct: 454 LVVLLSTFTEFSNLKEGKRKGQEVHAYLFRSGLVDARISIGNALVNMYGKCTAIDNACSV 513
Query: 175 FSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDD 234
F + +TV W + I F + + F M R + ++++ S L +C +
Sbjct: 514 FQLMPSKDTVSWNSMISGLDHNERFEEAVSCFHTMKRNGMVPSNFSVISTLSSCSSLGWL 573
Query: 235 GNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLV 294
GRQ+H K GL+ D V L+ +Y + + + ++VF + + + SWN+ +
Sbjct: 574 -TLGRQIHGEGFKWGLDLDVSVSNALLTLYAETDSINECQKVFFQMPEYDQV-SWNSFIG 631
Query: 295 GYIR-NGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
+ ++A K+ M +G + ++ A SS S
Sbjct: 632 ALAKYEASVLQALKYFLEMMQAGWRPNRVTFINILAAVSSFS 673
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 99/247 (40%), Gaps = 10/247 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMP-LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
N LL + C Q++ +F M RD SW MI GY+ + + L MM+R +
Sbjct: 698 NALLAFYGKCEQMEDCEIIFSRMSERRDEVSWNSMISGYLHSGILHKAMDLVWPMMQRGQ 757
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+ VL AC +E G +VH + ++ + +L++ Y K +
Sbjct: 758 K-----LDGFTFATVLSACASVATLERGMEVHACAVRACLESDVVVGSALVDMYAKCGKI 812
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+ A F + N W + I R GH + F M + + TF VL AC
Sbjct: 813 DYASRFFELMPVRNIYSWNSMISGYARHGHGQKALKIFTRMKQHGQSPDHVTFVGVLSAC 872
Query: 229 G--GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
G+ D+G + + + E+ C +VD+ G+ ++ E + + NI
Sbjct: 873 SHVGLVDEGYKHFKSMGEVYGLS-PRIEHFSC-MVDLLGRAGDVKKIEDFIKTMPMDPNI 930
Query: 287 ASWNAML 293
W +L
Sbjct: 931 LIWRTVL 937
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 96/202 (47%), Gaps = 5/202 (2%)
Query: 138 QVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREG 197
+H L+K G + ++ +LIN Y + L A +F ++ + N V W+ I +
Sbjct: 161 HLHLQLYKTGFTDDVFFCNTLINIYVRIGNLVSARKLFDEMPQKNLVSWSCLISGYTQNR 220
Query: 198 HFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDG-NCGRQMHANIVKIGLESDEYV 256
+ + FK + + N + S L+AC G G Q+HA I K+ SD +
Sbjct: 221 MPDEACSLFKGVISSGLLPNHFAVGSALRACQQCGSTGIKLGMQIHAFICKLPCVSDMIL 280
Query: 257 QCGLVDMYGKCR-LLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKAS 315
L+ MY C + DA RVF+ I +N +WN+++ Y R G V A K +M+
Sbjct: 281 SNVLMSMYSDCSGSIDDAHRVFDEI-KFRNSVTWNSIISVYCRRGDAVSAFKLFSVMQME 339
Query: 316 GIQIQESLINDLRIACSSISAS 337
G+++ +L + CS ++A+
Sbjct: 340 GVEL--NLRPNEYTLCSLVTAA 359
Score = 37.7 bits (86), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Query: 240 QMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRN 299
+H + K G D + L+++Y + L A ++F+ + +KN+ SW+ ++ GY +N
Sbjct: 161 HLHLQLYKTGFTDDVFFCNTLINIYVRIGNLVSARKLFDEM-PQKNLVSWSCLISGYTQN 219
Query: 300 GLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKI 339
+ EA + +SG+ + AC ++ I
Sbjct: 220 RMPDEACSLFKGVISSGLLPNHFAVGSALRACQQCGSTGI 259
>gi|357154827|ref|XP_003576915.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18485-like, partial [Brachypodium distachyon]
Length = 735
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 90/294 (30%), Positives = 136/294 (46%), Gaps = 17/294 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ + +CG AR++FDEMP RD SW ++ ++ + + MM+
Sbjct: 115 NTLVAFYAACGHAGDARRVFDEMPARDVVSWNSLVSSFLANKMFDDARQALLSMMRSG-- 172
Query: 110 HMLLVFPAWI--IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
P + +V V+ AC G VHGL+ K G ++L +L++ YGKF
Sbjct: 173 -----VPVNVASLVSVVPACGVEQEGGFGLGVHGLVLKTGLDSIVNLGNALVDMYGKFGH 227
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
+E + VF + N V W + I G + V F+ M S T SS+L A
Sbjct: 228 VEASMKVFEGMPERNEVSWNSAIGCFLNAGLYGDVLALFRGMSERGFMPGSITLSSLLPA 287
Query: 228 ---CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
G D GR++H +K +E D +V LVDMY K L A VFE I + +
Sbjct: 288 LVELGYFD----LGREVHGYSIKRAMELDIFVANSLVDMYAKFGSLEKACAVFEKI-EVR 342
Query: 285 NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASK 338
N+ SWNAM+ ++NG EA + M+ G + +L ACS +++ K
Sbjct: 343 NVVSWNAMIANLVQNGAESEAFGLVIKMQKDGECPNSITLVNLLPACSRMASLK 396
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 91/335 (27%), Positives = 163/335 (48%), Gaps = 13/335 (3%)
Query: 6 LPITTDMYTCLIKECTFQKDSAGAFELLNH-IRKRVNIKPTLLFLNRLLLMHVSCGQLDT 64
+P+ ++ C +++ G F L H + + + + N L+ M+ G ++
Sbjct: 173 VPVNVASLVSVVPACGVEQE--GGFGLGVHGLVLKTGLDSIVNLGNALVDMYGKFGHVEA 230
Query: 65 ARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVC-V 123
+ ++F+ MP R+ SW I +++ Y + + LF M +R G M P I + +
Sbjct: 231 SMKVFEGMPERNEVSWNSAIGCFLNAGLYGDVLALFRGMSER--GFM----PGSITLSSL 284
Query: 124 LKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNT 183
L A V +LG++VHG K +I + SL++ Y KF LE A VF +++ N
Sbjct: 285 LPALVELGYFDLGREVHGYSIKRAMELDIFVANSLVDMYAKFGSLEKACAVFEKIEVRNV 344
Query: 184 VVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHA 243
V W A I N + G + F +M ++ NS T ++L AC + G+Q+HA
Sbjct: 345 VSWNAMIANLVQNGAESEAFGLVIKMQKDGECPNSITLVNLLPACSRMASL-KTGKQIHA 403
Query: 244 NIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYV 303
++ GL D ++ L+DMY KC LR A+ +F+L +K+ S+N +++GY ++
Sbjct: 404 WSIRTGLMFDLFISNALIDMYAKCGQLRLAQSIFDL--SEKDDVSYNTLILGYSQSPWSF 461
Query: 304 EATKFLYLMKASGIQIQESLINDLRIACSSISASK 338
E+ + + GI+ AC+++S+ K
Sbjct: 462 ESLNLFKQLSSVGIEYDAISFMGALTACTNLSSFK 496
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/269 (26%), Positives = 128/269 (47%), Gaps = 10/269 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ G L+ A +F+++ +R+ SW MI V E L +M K +
Sbjct: 317 NSLVDMYAKFGSLEKACAVFEKIEVRNVVSWNAMIANLVQNGAESEAFGLVIKMQKDGE- 375
Query: 110 HMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
P I +V +L AC +++ GKQ+H + G ++ ++ +LI+ Y K L
Sbjct: 376 -----CPNSITLVNLLPACSRMASLKTGKQIHAWSIRTGLMFDLFISNALIDMYAKCGQL 430
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
A +F L + V + I+ + + N FK++ I+ ++ +F L AC
Sbjct: 431 RLAQSIF-DLSEKDDVSYNTLILGYSQSPWSFESLNLFKQLSSVGIEYDAISFMGALTAC 489
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
+ G+++H +V+ L + ++ L+ +Y K +L A ++F I +K++AS
Sbjct: 490 TNLSSFKQ-GKEIHGVLVRRLLSNHPFLANTLLGLYTKGGMLDTASKIFNRI-KEKDVAS 547
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGI 317
WN M++GY +G A LMK G+
Sbjct: 548 WNNMIMGYGMHGQIDAAFHLFDLMKDHGV 576
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 63/260 (24%), Positives = 119/260 (45%), Gaps = 17/260 (6%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R + L N L+ M+ CGQL A+ +FD + +D S+ +I+GY E +
Sbjct: 407 RTGLMFDLFISNALIDMYAKCGQLRLAQSIFD-LSEKDDVSYNTLILGYSQSPWSFESLN 465
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
LF ++ + + + A + L AC + + GK++HG+L + S + L +L
Sbjct: 466 LFKQLSS-----VGIEYDAISFMGALTACTNLSSFKQGKEIHGVLVRRLLSNHPFLANTL 520
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
+ Y K L+ A +F+++K + W I+ G F+ F M + +
Sbjct: 521 LGLYTKGGMLDTASKIFNRIKEKDVASWNNMIMGYGMHGQIDAAFHLFDLMKDHGVTYDH 580
Query: 219 YTFSSVLKAC--GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERV 276
++ +VL C GG+ + G++ ++++ LE + +VD+ G+ L ++
Sbjct: 581 VSYIAVLSVCSHGGLVER---GKKYFSHMLAQNLEPQQMHYACMVDLLGRSGQLTES--- 634
Query: 277 FELIVD---KKNIASWNAML 293
E+I+D N W A+L
Sbjct: 635 VEIILDMPFHANSDVWGALL 654
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 82/181 (45%), Gaps = 2/181 (1%)
Query: 136 GKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCR 195
G ++H + G ++ +L+ FY DA VF ++ + V W + + +
Sbjct: 95 GLELHAAALRSGHLADVFAGNTLVAFYAACGHAGDARRVFDEMPARDVVSWNSLVSSFLA 154
Query: 196 EGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEY 255
F M R + N + SV+ AC GV+ +G G +H ++K GL+S
Sbjct: 155 NKMFDDARQALLSMMRSGVPVNVASLVSVVPAC-GVEQEGGFGLGVHGLVLKTGLDSIVN 213
Query: 256 VQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKAS 315
+ LVDMYGK + + +VFE + ++ + SWN+ + ++ GLY + M
Sbjct: 214 LGNALVDMYGKFGHVEASMKVFEGMPERNEV-SWNSAIGCFLNAGLYGDVLALFRGMSER 272
Query: 316 G 316
G
Sbjct: 273 G 273
>gi|302822394|ref|XP_002992855.1| hypothetical protein SELMODRAFT_136091 [Selaginella moellendorffii]
gi|300139303|gb|EFJ06046.1| hypothetical protein SELMODRAFT_136091 [Selaginella moellendorffii]
Length = 758
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 84/266 (31%), Positives = 127/266 (47%), Gaps = 19/266 (7%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ MH C D AR++F + ++ SW MI Y E + LF M +
Sbjct: 245 LVTMHGRCAMPDAARKIFASIERKNVVSWTTMIAAYAQSDRSDEAMELFHAM------DL 298
Query: 112 LLVFPA-WIIVCVLKACVCTMNME-------LGKQVHGLLFKLGSSRNISLTGSLINFYG 163
V P+ V V+ A + + + + + G + L ++++ YG
Sbjct: 299 EGVRPSEQTFVSVVHALASSSSSRDELAALAAARSLEERALRSGLGIDGVLGNAMVDLYG 358
Query: 164 KFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSS 223
K R ++A VF ++ + V WTA I + G + F F+EM I+ + TF S
Sbjct: 359 KRRRPDEARGVFDAMRSRSAVAWTAMIQAYAQSGRREEAFALFREM---EIEPAATTFVS 415
Query: 224 VLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
VL+AC G D + GR++H+ +V GLESD +V L+DM+GKC A FE I D
Sbjct: 416 VLEACAG-SSDLDAGREVHSAVVSRGLESDVFVGTALIDMFGKCGDCDAARSSFERIAD- 473
Query: 284 KNIASWNAMLVGYIRNGLYVEATKFL 309
K I WNAML Y++NG +A + L
Sbjct: 474 KTIVPWNAMLAVYVQNGRPRDALELL 499
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 79/318 (24%), Positives = 146/318 (45%), Gaps = 26/318 (8%)
Query: 28 GAFELLNHIRKRVN---IKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMI 84
G+ +L ++R RV+ L+ L+ M+ C + AR++FD + ++ SW MI
Sbjct: 24 GSIDLAVYVRARVDACGFGAHLVVGTALIGMYGRCKRPGEAREIFDSLREKNVVSWTSMI 83
Query: 85 VGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVH--G 141
Y +E + L+ M V P + + + +AC N+E +++
Sbjct: 84 RAYALSGQNREAVKLYKAMD---------VTPNEYTLASIAEAC---ENLEEAREIETRA 131
Query: 142 LLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQ 201
+ GS R ++L +++ + K L+DA + N W I R
Sbjct: 132 VDGGFGSVRAVAL--AIVGMFCKLGSLDDARRYLIRHDAKNVFCWNQLIAAQGRSSSSST 189
Query: 202 VFNDFKEMGRER-IKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGL 260
+ ++EM R ++ + T+ +LK C D GR++HA++++ G E DE V L
Sbjct: 190 AMDLYREMRRNHGVEPDCVTYLELLKVC----SDWKLGRELHASVLEHGFEQDEVVSSAL 245
Query: 261 VDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQ 320
V M+G+C + A ++F I ++KN+ SW M+ Y ++ EA + + M G++
Sbjct: 246 VTMHGRCAMPDAARKIFASI-ERKNVVSWTTMIAAYAQSDRSDEAMELFHAMDLEGVRPS 304
Query: 321 ESLINDLRIACSSISASK 338
E + A +S S+S+
Sbjct: 305 EQTFVSVVHALASSSSSR 322
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 105/248 (42%), Gaps = 28/248 (11%)
Query: 63 DTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVC 122
D AR +FD M R +W MI Y +E LF EM + A V
Sbjct: 364 DEARGVFDAMRSRSAVAWTAMIQAYAQSGRREEAFALFREME--------IEPAATTFVS 415
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
VL+AC + +++ G++VH + G ++ + +LI+ +GK + A F ++
Sbjct: 416 VLEACAGSSDLDAGREVHSAVVSRGLESDVFVGTALIDMFGKCGDCDAARSSFERIADKT 475
Query: 183 TVVWTAKI---VNNCREGHFHQVFNDFKEM--------------GRERIKKNSYTFSSVL 225
V W A + V N R ++ N + G + + TF +L
Sbjct: 476 IVPWNAMLAVYVQNGRPRDALELLNHGGTVNGRGGTVKLVNATGGTGGVTPDKITFVLLL 535
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEY-VQCGLVDMYGKCRLLRDAERVFELIVDKK 284
ACG + + GR +H + + L + + LV MY C L +A F I +K
Sbjct: 536 NACGALGEIA-VGRALHRDAIPGELLGESSCIGNALVAMYASCGSLEEARVAFRGI-QRK 593
Query: 285 NIASWNAM 292
++ASWNAM
Sbjct: 594 SLASWNAM 601
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 61/261 (23%), Positives = 114/261 (43%), Gaps = 16/261 (6%)
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI 119
G LD AR+ ++ W +I + + L+ EM +R G V P +
Sbjct: 154 GSLDDARRYLIRHDAKNVFCWNQLIAAQGRSSSSSTAMDLYREM-RRNHG----VEPDCV 208
Query: 120 I-VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL 178
+ +LK C + +LG+++H + + G ++ ++ +L+ +G+ + A +F+ +
Sbjct: 209 TYLELLKVC---SDWKLGRELHASVLEHGFEQDEVVSSALVTMHGRCAMPDAARKIFASI 265
Query: 179 KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGN-- 236
+R N V WT I + + F M E ++ + TF SV+ A +
Sbjct: 266 ERKNVVSWTTMIAAYAQSDRSDEAMELFHAMDLEGVRPSEQTFVSVVHALASSSSSRDEL 325
Query: 237 ----CGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAM 292
R + ++ GL D + +VD+YGK R +A VF+ + + +A W AM
Sbjct: 326 AALAAARSLEERALRSGLGIDGVLGNAMVDLYGKRRRPDEARGVFDAMRSRSAVA-WTAM 384
Query: 293 LVGYIRNGLYVEATKFLYLMK 313
+ Y ++G EA M+
Sbjct: 385 IQAYAQSGRREEAFALFREME 405
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 62/311 (19%), Positives = 113/311 (36%), Gaps = 34/311 (10%)
Query: 7 PITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTAR 66
P T + +++ C D E+ + + R ++ + L+ M CG D AR
Sbjct: 408 PAAT-TFVSVLEACAGSSDLDAGREVHSAVVSR-GLESDVFVGTALIDMFGKCGDCDAAR 465
Query: 67 QLFDEMPLRDFNSWAVMIVGYVDVADYQECITLF--AEMMKRKKGHMLL---------VF 115
F+ + + W M+ YV ++ + L + + G + L V
Sbjct: 466 SSFERIADKTIVPWNAMLAVYVQNGRPRDALELLNHGGTVNGRGGTVKLVNATGGTGGVT 525
Query: 116 PAWII-VCVLKACVCTMNMELGKQVHGLLFK---LGSSRNISLTGSLINFYGKFRCLEDA 171
P I V +L AC + +G+ +H LG S I +L+ Y LE+A
Sbjct: 526 PDKITFVLLLNACGALGEIAVGRALHRDAIPGELLGESSCIG--NALVAMYASCGSLEEA 583
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREG---HFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
F ++R + W A G + F EM + + + + +L C
Sbjct: 584 RVAFRGIQRKSLASWNAMAGAVAALGGSRSWSASMELFSEMELQGFNADEASLAGILSGC 643
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCG------LVDMYGKCRLLRDAERVFELIVD 282
+ G + + + + D V C +VDM G+ L +AE + +
Sbjct: 644 ------SHAGLKHQGWRIFVSMTDDFGVPCSAVHYVCIVDMLGRLGQLDEAESLLGSMPY 697
Query: 283 KKNIASWNAML 293
+ + W +L
Sbjct: 698 QPGLVGWMTLL 708
>gi|242053565|ref|XP_002455928.1| hypothetical protein SORBIDRAFT_03g027395 [Sorghum bicolor]
gi|241927903|gb|EES01048.1| hypothetical protein SORBIDRAFT_03g027395 [Sorghum bicolor]
Length = 537
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 88/318 (27%), Positives = 146/318 (45%), Gaps = 18/318 (5%)
Query: 6 LPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTA 65
+P + ++K C S GA ++ + + + ++ L+ + CG+++ A
Sbjct: 170 VPADNFVAPTVLKACAGLGLS-GAGRAVHGYAWKAGVAECVYVMSSLVDFYGKCGEVEDA 228
Query: 66 RQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI-IVCVL 124
R +FD MP R +W M++ Y+ E + LF EM R +G V P + I+ L
Sbjct: 229 RAVFDAMPERTVVTWNTMLMAYIHNGRIDEAVELFYEM--RVEG----VLPTRVSILSFL 282
Query: 125 KACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTV 184
A ++ G+Q H + G ++ L S+INFY K +E A+ VF Q+K + V
Sbjct: 283 SASADLEAIDGGRQGHAVAVSSGLEMDVILGSSMINFYCKVGLVEAAEAVFEQMKERDAV 342
Query: 185 VWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC----GRQ 240
W I ++G + F+ + M +K + T +S++ AC +C G
Sbjct: 343 TWNLMIAGYFQDGQIDKAFDTCRRMLEANLKFDCVTLASIIMAC-----LKSCIMLVGIA 397
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
H V+ GL SD+ V GL+DMY + A RVF + +N+ W M+ Y+ G
Sbjct: 398 AHGYAVRNGLHSDKTVASGLIDMYASAGRIEHARRVFNAMC-PRNLVIWKVMISAYVDCG 456
Query: 301 LYVEATKFLYLMKASGIQ 318
+ EA L M+ GI
Sbjct: 457 INSEARNLLNQMQLEGIS 474
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 67/203 (33%), Positives = 98/203 (48%), Gaps = 6/203 (2%)
Query: 119 IIVCVLKACVCTMNMELGKQVHGLLFKLGSS--RNISLTGSLINFYGKFRCLEDADFVFS 176
+ +L+ CV ++ G+QVH L K G RN + L FY + L+DA+
Sbjct: 71 VYTSLLQCCVTAGSLRAGRQVHAALVKRGPYYCRNAYVGTKLTVFYARCGALDDAERALG 130
Query: 177 QL-KRH-NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDD 234
L +RH N W A I R G + F M + +++ +VLKAC G+
Sbjct: 131 ALPERHRNAFAWAAVIGLWSRAGLHARALAGFVAMLEAGVPADNFVAPTVLKACAGLGLS 190
Query: 235 GNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLV 294
G GR +H K G+ YV LVD YGKC + DA VF+ + ++ + +WN ML+
Sbjct: 191 G-AGRAVHGYAWKAGVAECVYVMSSLVDFYGKCGEVEDARAVFDAM-PERTVVTWNTMLM 248
Query: 295 GYIRNGLYVEATKFLYLMKASGI 317
YI NG EA + Y M+ G+
Sbjct: 249 AYIHNGRIDEAVELFYEMRVEGV 271
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 74/254 (29%), Positives = 115/254 (45%), Gaps = 11/254 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNS--WAVMIVGYVDVADYQECITLFAEMMKRK 107
+L + + CG LD A + +P R N+ WA +I + + + F M++
Sbjct: 110 TKLTVFYARCGALDDAERALGALPERHRNAFAWAAVIGLWSRAGLHARALAGFVAMLEAG 169
Query: 108 KGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
V P VLKAC G+ VHG +K G + + + SL++FYGK
Sbjct: 170 VPADNFVAP-----TVLKACAGLGLSGAGRAVHGYAWKAGVAECVYVMSSLVDFYGKCGE 224
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
+EDA VF + V W ++ G + F EM E + + S L A
Sbjct: 225 VEDARAVFDAMPERTVVTWNTMLMAYIHNGRIDEAVELFYEMRVEGVLPTRVSILSFLSA 284
Query: 228 CGGVDD-DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
++ DG GRQ HA V GLE D + +++ Y K L+ AE VFE + ++ +
Sbjct: 285 SADLEAIDG--GRQGHAVAVSSGLEMDVILGSSMINFYCKVGLVEAAEAVFEQMKERDAV 342
Query: 287 ASWNAMLVGYIRNG 300
+WN M+ GY ++G
Sbjct: 343 -TWNLMIAGYFQDG 355
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 3/104 (2%)
Query: 237 CGRQMHANIVKIGLE--SDEYVQCGLVDMYGKCRLLRDAERVFELIVDK-KNIASWNAML 293
GRQ+HA +VK G + YV L Y +C L DAER + ++ +N +W A++
Sbjct: 87 AGRQVHAALVKRGPYYCRNAYVGTKLTVFYARCGALDDAERALGALPERHRNAFAWAAVI 146
Query: 294 VGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISAS 337
+ R GL+ A M +G+ + + AC+ + S
Sbjct: 147 GLWSRAGLHARALAGFVAMLEAGVPADNFVAPTVLKACAGLGLS 190
>gi|334185027|ref|NP_186882.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546764|sp|Q9FWA6.2|PP207_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g02330
gi|332640272|gb|AEE73793.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 903
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 87/358 (24%), Positives = 159/358 (44%), Gaps = 27/358 (7%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCG 60
M + ++ +Y +++ C + +L H K + + L M+ C
Sbjct: 272 MQKVNAGVSQSIYASVLRSCAALSELRLGGQLHAHALKS-DFAADGIVRTATLDMYAKCD 330
Query: 61 QLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWII 120
+ A+ LFD + S+ MI GY + + LF +M G F +
Sbjct: 331 NMQDAQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLG-----FDEISL 385
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
V +AC + G Q++GL K S ++ + + I+ YGK + L +A VF +++R
Sbjct: 386 SGVFRACALVKGLSEGLQIYGLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRR 445
Query: 181 HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQ 240
+ V W A I + + G ++ F M R RI+ + +TF S+LKAC G G +
Sbjct: 446 RDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSILKACTG--GSLGYGME 503
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA------------- 287
+H++IVK G+ S+ V C L+DMY KC ++ +AE++ + N++
Sbjct: 504 IHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRANVSGTMEELEKMHNKR 563
Query: 288 ------SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKI 339
SWN+++ GY+ +A M GI + + C++++++ +
Sbjct: 564 LQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGL 621
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 92/354 (25%), Positives = 160/354 (45%), Gaps = 35/354 (9%)
Query: 8 ITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNI---KPTLLFLNRLLLMHVSCGQLDT 64
++T ++ + KEC Q GA EL + I +PT LN LL ++ + +
Sbjct: 46 VSTTNFSFVFKECAKQ----GALELGKQAHAHMIISGFRPTTFVLNCLLQVYTNSRDFVS 101
Query: 65 ARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR-------------KKGHM 111
A +FD+MPLRD SW MI GY D + + F M R + G
Sbjct: 102 ASMVFDKMPLRDVVSWNKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGES 161
Query: 112 L-------------LVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
L + F +LK C + LG Q+HG++ ++G ++ +L
Sbjct: 162 LKSIEVFVDMGREGIEFDGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASAL 221
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
++ Y K + ++ VF + N+V W+A I + FKEM + +
Sbjct: 222 LDMYAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQ 281
Query: 219 YTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE 278
++SVL++C + + G Q+HA+ +K +D V+ +DMY KC ++DA+ +F+
Sbjct: 282 SIYASVLRSCAAL-SELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFD 340
Query: 279 LIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+ N S+NAM+ GY + +A + + +SG+ E ++ + AC+
Sbjct: 341 -NSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACA 393
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 90/307 (29%), Positives = 144/307 (46%), Gaps = 36/307 (11%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N + M+ C L A ++FDEM RD SW +I + E + LF M++ +
Sbjct: 421 NAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIE 480
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
F + +LKAC ++ G ++H + K G + N S+ SLI+ Y K +E
Sbjct: 481 PDEFTFGS-----ILKACTGG-SLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIE 534
Query: 170 DADFVFSQL--------------KRHNT------VVWTAKI---VNNCREGHFHQVFNDF 206
+A+ + S+ K HN V W + I V + +F
Sbjct: 535 EAEKIHSRFFQRANVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRM 594
Query: 207 KEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGK 266
EMG I + +T+++VL C + G G+Q+HA ++K L+SD Y+ LVDMY K
Sbjct: 595 MEMG---ITPDKFTYATVLDTCANLASAG-LGKQIHAQVIKKELQSDVYICSTLVDMYSK 650
Query: 267 CRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQE-SLIN 325
C L D+ +FE + +++ +WNAM+ GY +G EA + M I+ + I+
Sbjct: 651 CGDLHDSRLMFEKSL-RRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFIS 709
Query: 326 DLRIACS 332
LR AC+
Sbjct: 710 ILR-ACA 715
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 122/247 (49%), Gaps = 10/247 (4%)
Query: 93 YQECITLFA-EMMKRKKGHMLLV---FPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGS 148
++EC A E+ K+ HM++ +++ C+L+ + + V F
Sbjct: 55 FKECAKQGALELGKQAHAHMIISGFRPTTFVLNCLLQVYTNSRDFVSASMV----FDKMP 110
Query: 149 SRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKE 208
R++ +IN Y K + A+ F+ + + V W + + + G + F +
Sbjct: 111 LRDVVSWNKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVD 170
Query: 209 MGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCR 268
MGRE I+ + TF+ +LK C ++D + G Q+H +V++G ++D L+DMY K +
Sbjct: 171 MGREGIEFDGRTFAIILKVCSFLEDT-SLGMQIHGIVVRVGCDTDVVAASALLDMYAKGK 229
Query: 269 LLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLR 328
++ RVF+ I +K N SW+A++ G ++N L A KF M+ + +S+ +
Sbjct: 230 RFVESLRVFQGIPEK-NSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVL 288
Query: 329 IACSSIS 335
+C+++S
Sbjct: 289 RSCAALS 295
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 71/159 (44%), Gaps = 7/159 (4%)
Query: 79 SWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQ 138
SW +I GYV ++ LF MM+ M + + VL C + LGKQ
Sbjct: 570 SWNSIISGYVMKEQSEDAQMLFTRMME-----MGITPDKFTYATVLDTCANLASAGLGKQ 624
Query: 139 VHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGH 198
+H + K ++ + +L++ Y K L D+ +F + R + V W A I G
Sbjct: 625 IHAQVIKKELQSDVYICSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGK 684
Query: 199 FHQVFNDFKEMGRERIKKNSYTFSSVLKACG--GVDDDG 235
+ F+ M E IK N TF S+L+AC G+ D G
Sbjct: 685 GEEAIQLFERMILENIKPNHVTFISILRACAHMGLIDKG 723
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 57/127 (44%), Gaps = 12/127 (9%)
Query: 6 LPITTD--MYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLD 63
+ IT D Y ++ C SAG + ++ + ++ + + L+ M+ CG L
Sbjct: 597 MGITPDKFTYATVLDTCA-NLASAGLGKQIHAQVIKKELQSDVYICSTLVDMYSKCGDLH 655
Query: 64 TARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR--KKGHMLLVFPAWIIV 121
+R +F++ RDF +W MI GY +E I LF M+ K H+ +
Sbjct: 656 DSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHV-------TFI 708
Query: 122 CVLKACV 128
+L+AC
Sbjct: 709 SILRACA 715
>gi|255544628|ref|XP_002513375.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223547283|gb|EEF48778.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 922
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 82/289 (28%), Positives = 149/289 (51%), Gaps = 6/289 (2%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
+ + N L+ M+ G + AR +FDEM ++ SW +I Y+ Y+E I LF +M
Sbjct: 248 VFYNNTLINMYSKFGYICLARYVFDEMSEKNEASWNHIISAYLHAGLYRESIGLFNDMRD 307
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
F + + C C+ + G QVH L+ K G ++ + SL++FYG +
Sbjct: 308 LGIKPTGFAFASLVTACDRSGCM----LSEGIQVHDLIVKFGMLCDVFVGTSLLHFYGTY 363
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
+A VF+++ N V WTA +V G +V N + EM E + N+ T ++V+
Sbjct: 364 GLAFNARRVFNEMLDKNVVSWTALMVAYSDFGDPMEVMNIYCEMRCEGLSGNANTLATVI 423
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
+C ++D+ G Q+ +++K GL ++ V+ L+ M+G ++A +F + ++ +
Sbjct: 424 SSCASLEDEF-LGHQILGHVIKSGLGTNVSVENSLISMFGSFGRAQEACYIFGGM-NEHD 481
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
I SWN+M+ Y++NGL+ E+ + Y M+ I + ++ L C S+
Sbjct: 482 IISWNSMISVYVQNGLFEESLRCFYWMQHVHNHINSTTLSTLLSECGSV 530
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 77/272 (28%), Positives = 127/272 (46%), Gaps = 7/272 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ G+ + A +F +M RD SW M+ Y + + +F + KKG
Sbjct: 556 NTLIAMYSGAGKSEHADLVFQKMAERDLISWNSMLACYAQDGKSLDALKIFTRIFHMKKG 615
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ F + L AC + G+ +H L+ G ++ ++ +L+ Y K
Sbjct: 616 ANFVTFTS-----ALAACSDPDFIAEGRILHALVILTGLHESLIVSNALVTLYAKSGTTI 670
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
+A VF + R + V W A I + + FK M RE I + T ++VL A
Sbjct: 671 EAKKVFQMMSRRDEVTWNALIGGHANNRESDEAVKAFKLM-REDIPASYITIANVLGALL 729
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
D G +HA V IGLESD+YVQ L+ MY KC L + +F+ +++ KN +W
Sbjct: 730 APTDLLKHGMPIHAYTVMIGLESDQYVQNSLITMYAKCGDLNSSNCIFDGLIN-KNAVAW 788
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQE 321
N ++ +G E+ K L M+ +G+ + +
Sbjct: 789 NTVMAANAYHGQMEESLKLLVKMRHAGVDLDQ 820
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/258 (29%), Positives = 132/258 (51%), Gaps = 7/258 (2%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL + + G AR++F+EM ++ SW ++V Y D D E + ++ EM R +G
Sbjct: 356 LLHFYGTYGLAFNARRVFNEMLDKNVVSWTALMVAYSDFGDPMEVMNIYCEM--RCEG-- 411
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
L A + V+ +C + LG Q+ G + K G N+S+ SLI+ +G F ++A
Sbjct: 412 -LSGNANTLATVISSCASLEDEFLGHQILGHVIKSGLGTNVSVENSLISMFGSFGRAQEA 470
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
++F + H+ + W + I + G F + F M NS T S++L CG V
Sbjct: 471 CYIFGGMNEHDIISWNSMISVYVQNGLFEESLRCFYWMQHVHNHINSTTLSTLLSECGSV 530
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
D+ GR +H+ ++K G++S+ + L+ MY A+ VF+ + + +++ SWN+
Sbjct: 531 DNL-KWGRGIHSLVIKFGMDSNICICNTLIAMYSGAGKSEHADLVFQKMAE-RDLISWNS 588
Query: 292 MLVGYIRNGLYVEATKFL 309
ML Y ++G ++A K
Sbjct: 589 MLACYAQDGKSLDALKIF 606
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 78/298 (26%), Positives = 131/298 (43%), Gaps = 8/298 (2%)
Query: 16 LIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLR 75
+I C +D ++L H+ K + + N L+ M S G+ A +F M
Sbjct: 422 VISSCASLEDEFLGHQILGHVIKS-GLGTNVSVENSLISMFGSFGRAQEACYIFGGMNEH 480
Query: 76 DFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMEL 135
D SW MI YV ++E + F M H+ + + +L C N++
Sbjct: 481 DIISWNSMISVYVQNGLFEESLRCFYWMQ-----HVHNHINSTTLSTLLSECGSVDNLKW 535
Query: 136 GKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCR 195
G+ +H L+ K G NI + +LI Y E AD VF ++ + + W + + +
Sbjct: 536 GRGIHSLVIKFGMDSNICICNTLIAMYSGAGKSEHADLVFQKMAERDLISWNSMLACYAQ 595
Query: 196 EGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEY 255
+G F + + N TF+S L AC D GR +HA ++ GL
Sbjct: 596 DGKSLDALKIFTRIFHMKKGANFVTFTSALAACSDPDFIAE-GRILHALVILTGLHESLI 654
Query: 256 VQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMK 313
V LV +Y K +A++VF+++ +++ +WNA++ G+ N EA K LM+
Sbjct: 655 VSNALVTLYAKSGTTIEAKKVFQMM-SRRDEVTWNALIGGHANNRESDEAVKAFKLMR 711
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 65/277 (23%), Positives = 121/277 (43%), Gaps = 9/277 (3%)
Query: 42 IKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFA 101
+ +L+ N L+ ++ G A+++F M RD +W +I G+ + + E + F
Sbjct: 649 LHESLIVSNALVTLYAKSGTTIEAKKVFQMMSRRDEVTWNALIGGHANNRESDEAVKAFK 708
Query: 102 EMMKRKKGHMLLVFPAWIIVCVLKACVCTMNM-ELGKQVHGLLFKLGSSRNISLTGSLIN 160
M + + I VL A + ++ + G +H +G + + SLI
Sbjct: 709 LMREDIPASYI------TIANVLGALLAPTDLLKHGMPIHAYTVMIGLESDQYVQNSLIT 762
Query: 161 FYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYT 220
Y K L ++ +F L N V W + N G + +M + + ++
Sbjct: 763 MYAKCGDLNSSNCIFDGLINKNAVAWNTVMAANAYHGQMEESLKLLVKMRHAGVDLDQFS 822
Query: 221 FSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELI 280
FS L A + G+Q+ + VK+G +SD +V L+DMY KC L D R+
Sbjct: 823 FSGCLSATATLAMLEE-GQQLQSLAVKLGFDSDPFVTNALMDMYAKCGELDDVLRIIPQP 881
Query: 281 VDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGI 317
+++ + SWN ++ + R+G + A + + M G+
Sbjct: 882 LERSRL-SWNTLISSFARHGNFERAKETFHEMLKCGV 917
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 105/227 (46%), Gaps = 16/227 (7%)
Query: 116 PAWIIVCVLKACVCTMNMEL-GKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFV 174
P I C + + E GK +H L K ++ + +LIN Y KF + A +V
Sbjct: 211 PNPEISCFYQKGFSQITKEAPGKALHALCIKGLANLGVFYNNTLINMYSKFGYICLARYV 270
Query: 175 FSQLKRHNTVVWTAKIVNNCREGHFHQ---VFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
F ++ N W I G + + +FND +++G IK + F+S++ AC
Sbjct: 271 FDEMSEKNEASWNHIISAYLHAGLYRESIGLFNDMRDLG---IKPTGFAFASLVTAC--- 324
Query: 232 DDDGNC----GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
D C G Q+H IVK G+ D +V L+ YG L +A RVF ++D KN+
Sbjct: 325 -DRSGCMLSEGIQVHDLIVKFGMLCDVFVGTSLLHFYGTYGLAFNARRVFNEMLD-KNVV 382
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
SW A++V Y G +E M+ G+ + + + +C+S+
Sbjct: 383 SWTALMVAYSDFGDPMEVMNIYCEMRCEGLSGNANTLATVISSCASL 429
>gi|147863814|emb|CAN79347.1| hypothetical protein VITISV_019894 [Vitis vinifera]
Length = 667
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 87/288 (30%), Positives = 134/288 (46%), Gaps = 17/288 (5%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL M+ G++ AR++FD MP R +W MI Y + I LF ++ +
Sbjct: 184 LLRMYAEVGEIGDARKVFDGMPSRGLVTWNAMISCYSKYGRGDKSIGLFRQLXREG---- 239
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+ + VL + QVH L+ + G + +L+N Y K + A
Sbjct: 240 -ISADEYTYAIVLNEFAARWQVFEAMQVHSLIIERGFCSDRFTNNALVNLYSKCGYVASA 298
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
+F ++ + V WT IV + GH + F +M I+ NS+TF +L AC
Sbjct: 299 SRLFEEIPDQDVVSWTVIIVGFLQSGHMEEAMWLFYQMQLGDIEPNSFTFGGLLGACA-- 356
Query: 232 DDDGNC---GRQMHANIVKIG-LESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
D N GR H ++K G L +D V +VDMY KC + DA R F+ + +++IA
Sbjct: 357 --DANAFQKGRHFHGLVLKFGLLGADVVVGSAVVDMYSKCGEMGDALRAFQEM-PERDIA 413
Query: 288 SWNAMLVGYIRNGLYVEATKF---LYLMKASGIQIQESLINDLRIACS 332
SWN ++ GY +NG ++A K + L+ SGI E + ACS
Sbjct: 414 SWNGIICGYAQNGAGMKALKLYNEMVLLGPSGIAPNEVTFVGVLCACS 461
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 77/294 (26%), Positives = 135/294 (45%), Gaps = 11/294 (3%)
Query: 43 KPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAE 102
+P+++ N +L + G + A +LFD RD +SW +++ G V E +T F +
Sbjct: 78 QPSVVSYNTILSGYFKFGLVSEAIKLFDGTSKRDCHSWNIVLSGCVKNHKLGEGLTHFMK 137
Query: 103 MMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFY 162
M V P ++ C ++ G+QVH + K+ S + + +L+ Y
Sbjct: 138 MRCSS------VRPDNFTYAIIIPCC---DLGFGQQVHADIVKVCSDLDAFIGTNLLRMY 188
Query: 163 GKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFS 222
+ + DA VF + V W A I + G + F+++ RE I + YT++
Sbjct: 189 AEVGEIGDARKVFDGMPSRGLVTWNAMISCYSKYGRGDKSIGLFRQLXREGISADEYTYA 248
Query: 223 SVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282
VL Q+H+ I++ G SD + LV++Y KC + A R+FE I D
Sbjct: 249 IVLNEFAARWQVFE-AMQVHSLIIERGFCSDRFTNNALVNLYSKCGYVASASRLFEEIPD 307
Query: 283 KKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+++ SW ++VG++++G EA Y M+ I+ L AC+ +A
Sbjct: 308 -QDVVSWTVIIVGFLQSGHMEEAMWLFYQMQLGDIEPNSFTFGGLLGACADANA 360
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 115/252 (45%), Gaps = 17/252 (6%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ ++ CG + +A +LF+E+P +D SW V+IVG++ +E + LF +M
Sbjct: 283 NALVNLYSKCGYVASASRLFEEIPDQDVVSWTVIIVGFLQSGHMEEAMWLFYQMQLGDIE 342
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLG-SSRNISLTGSLINFYGKFRCL 168
F +L AC + G+ HGL+ K G ++ + ++++ Y K +
Sbjct: 343 PNSFTFGG-----LLGACADANAFQKGRHFHGLVLKFGLLGADVVVGSAVVDMYSKCGEM 397
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEM---GRERIKKNSYTFSSVL 225
DA F ++ + W I + G + + EM G I N TF VL
Sbjct: 398 GDALRAFQEMPERDIASWNGIICGYAQNGAGMKALKLYNEMVLLGPSGIAPNEVTFVGVL 457
Query: 226 KACG--GVDDDGNC--GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIV 281
AC G+ +G + +++K + E+ C +VD+ G+ LL++AE + +
Sbjct: 458 CACSHNGLLKEGYSYFKEMVDKHLIK---PTAEHYTC-MVDLLGRAGLLQEAEALILALP 513
Query: 282 DKKNIASWNAML 293
K + W A+L
Sbjct: 514 IKPDNVMWGALL 525
Score = 38.1 bits (87), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 241 MHANIVKIGLESDEYVQCG-LVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRN 299
+HA++VK GL + Y QC L+ Y + L DA ++ + + ++ S+N +L GY +
Sbjct: 37 LHASLVKNGLIAHVY-QCNILLQAYINSQALSDAHKLLHFM-PQPSVVSYNTILSGYFKF 94
Query: 300 GLYVEATKFL 309
GL EA K
Sbjct: 95 GLVSEAIKLF 104
>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g18750, chloroplastic; Flags: Precursor
gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 871
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 89/289 (30%), Positives = 139/289 (48%), Gaps = 14/289 (4%)
Query: 48 FLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRK 107
F N LL M+ CG LD+A+ +F EM R S+ MI GY E + LF EM +
Sbjct: 333 FCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEG 392
Query: 108 KGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166
+ P + + VL C ++ GK+VH + + +I ++ +L++ Y K
Sbjct: 393 ------ISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCG 446
Query: 167 CLEDADFVFSQLKRHNTVVWTAKI---VNNCREGHFHQVFNDFKEMGRERIKKNSYTFSS 223
+++A+ VFS+++ + + W I NC +FN E +R + T +
Sbjct: 447 SMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLE--EKRFSPDERTVAC 504
Query: 224 VLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
VL AC + + GR++H I++ G SD +V LVDMY KC L A +F+ I
Sbjct: 505 VLPACASL-SAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIA-S 562
Query: 284 KNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
K++ SW M+ GY +G EA M+ +GI+ E L ACS
Sbjct: 563 KDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACS 611
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 90/292 (30%), Positives = 148/292 (50%), Gaps = 16/292 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ ++ ++D+AR++FDEM RD SW +I GYV ++ +++F +M+
Sbjct: 234 NSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSG-- 291
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ IV V C + + LG+ VH + K SR +L++ Y K L+
Sbjct: 292 ---IEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLD 348
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A VF ++ + V +T+ I REG + F+EM E I + YT ++VL C
Sbjct: 349 SAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCA 408
Query: 230 G---VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVF-ELIVDKKN 285
+D+ G+++H I + L D +V L+DMY KC +++AE VF E+ V K+
Sbjct: 409 RYRLLDE----GKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRV--KD 462
Query: 286 IASWNAMLVGYIRNGLYVEA-TKFLYLMKASGIQIQESLINDLRIACSSISA 336
I SWN ++ GY +N EA + F L++ E + + AC+S+SA
Sbjct: 463 IISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSA 514
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 75/272 (27%), Positives = 127/272 (46%), Gaps = 13/272 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
++L LM+ +CG L A ++FDE+ + W +++ D+ I LF +MM
Sbjct: 133 SKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSG-- 190
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ ++ CV K+ ++ G+Q+HG + K G S+ SL+ FY K + ++
Sbjct: 191 ---VEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVD 247
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A VF ++ + + W + I G + + F +M I+ + T SV C
Sbjct: 248 SARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCA 307
Query: 230 GVDDDG---NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
D + GR +H+ VK ++ L+DMY KC L A+ VF + D +++
Sbjct: 308 ----DSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSD-RSV 362
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
S+ +M+ GY R GL EA K M+ GI
Sbjct: 363 VSYTSMIAGYAREGLAGEAVKLFEEMEEEGIS 394
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 110/248 (44%), Gaps = 8/248 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ CG + A +F EM ++D SW +I GY E ++LF +++ K+
Sbjct: 436 NALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKR- 494
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ CVL AC + G+++HG + + G + + SL++ Y K L
Sbjct: 495 ---FSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALL 551
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC- 228
A +F + + V WT I G + F +M + I+ + +F S+L AC
Sbjct: 552 LAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACS 611
Query: 229 -GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
G+ D+G + + KI + Y C +VDM + L A R E + +
Sbjct: 612 HSGLVDEGWRFFNIMRHECKIEPTVEHYA-C-IVDMLARTGDLIKAYRFIENMPIPPDAT 669
Query: 288 SWNAMLVG 295
W A+L G
Sbjct: 670 IWGALLCG 677
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 100/210 (47%), Gaps = 2/210 (0%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
VL+ C + +++ GK+V + G + +L L Y L++A VF ++K
Sbjct: 100 VLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEK 159
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
+ W + + G F FK+M ++ +SYTFS V K+ + + G Q+H
Sbjct: 160 ALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSV-HGGEQLH 218
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
I+K G V LV Y K + + A +VF+ + + +++ SWN+++ GY+ NGL
Sbjct: 219 GFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTE-RDVISWNSIINGYVSNGLA 277
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIACS 332
+ M SGI+I + I + C+
Sbjct: 278 EKGLSVFVQMLVSGIEIDLATIVSVFAGCA 307
>gi|302766669|ref|XP_002966755.1| hypothetical protein SELMODRAFT_85926 [Selaginella moellendorffii]
gi|300166175|gb|EFJ32782.1| hypothetical protein SELMODRAFT_85926 [Selaginella moellendorffii]
Length = 811
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 84/292 (28%), Positives = 136/292 (46%), Gaps = 8/292 (2%)
Query: 47 LFLNRLLLMHVSCGQLDTARQLFDEMPL--RDFNSWAVMIVGYVDVADYQECITLFAEMM 104
L L+ M+ CG LD AR++FD+ + + W M+ GY ++ + L+ +
Sbjct: 61 LVATALVDMYSKCGSLDDARRVFDDYSVDSKRMALWTAMVSGYALHGHSRQALELYQRFL 120
Query: 105 KRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
V +++ + AC ++ G+ +H + + L L+N YG+
Sbjct: 121 SVSSEPPDTV----MLLSAITACSSAEFLDDGRAIHAQISSRELDHHTHLGNGLVNMYGR 176
Query: 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
+ L A F ++ N V W I +EGH F+ M E + ++ TF V
Sbjct: 177 CKELHRARKAFEKITAKNLVSWNVIIGAYAQEGHRGHAMELFQRMDPEGVAADAVTFLHV 236
Query: 225 LKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
L ACGGV+ G+ R++H + GLE D +V LV+ YGKC L +A+RVF+ + K
Sbjct: 237 LDACGGVEAAGDV-RRIHKKLELSGLEWDVFVASSLVNAYGKCGCLAEAKRVFD-TMPLK 294
Query: 285 NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
N + +ML Y ++GL EA + M++ G + ACSSI A
Sbjct: 295 NTVTMTSMLAAYAQHGLGEEALEIYREMESQGRKADRVTFISALDACSSIGA 346
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 79/289 (27%), Positives = 133/289 (46%), Gaps = 12/289 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ C +L AR+ F+++ ++ SW V+I Y + LF M
Sbjct: 168 NGLVNMYGRCKELHRARKAFEKITAKNLVSWNVIIGAYAQEGHRGHAMELFQRMDPEGVA 227
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ F + VL AC +++H L G ++ + SL+N YGK CL
Sbjct: 228 ADAVTF-----LHVLDACGGVEAAGDVRRIHKKLELSGLEWDVFVASSLVNAYGKCGCLA 282
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
+A VF + NTV T+ + + G + ++EM + K + TF S L AC
Sbjct: 283 EAKRVFDTMPLKNTVTMTSMLAAYAQHGLGEEALEIYREMESQGRKADRVTFISALDACS 342
Query: 230 GVDDDGNCGRQMHANIVKIGL--ESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
+ GR +H+ ++ G+ + D + L++MYG+C +L A+ +F+ + DK I
Sbjct: 343 SIGALSQ-GRAIHSRLLVSGIIQQPDVVLGTALLNMYGRCGVLDAAKSLFDGMADKNTI- 400
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+WNA++ Y + G EA + M A Q + ACS++ A
Sbjct: 401 TWNALMGSYAQWGYGKEALNLYHSMDA---QPNSLTFLAMLTACSTVGA 446
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/258 (25%), Positives = 115/258 (44%), Gaps = 18/258 (6%)
Query: 43 KPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAE 102
+P ++ LL M+ CG LD A+ LFD M ++ +W ++ Y +E + L+
Sbjct: 365 QPDVVLGTALLNMYGRCGVLDAAKSLFDGMADKNTITWNALMGSYAQWGYGKEALNLYHS 424
Query: 103 MMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFY 162
M + L F + +L AC + G+ H L G + + + +L+N Y
Sbjct: 425 MDAQPNS---LTF-----LAMLTACSTVGALLQGRAAHARLAPAGFEKEVEVGVALVNMY 476
Query: 163 GKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFS 222
GK LEDA F++L+R V WT ++ G F + F EM + + +S
Sbjct: 477 GKCGSLEDALGTFAKLERKTVVTWTVAMLALAHHGEFRETLRLFTEMELDGVAPDSVALL 536
Query: 223 SVLKAC---GGVDDDGNCGRQMHANIVK-IGLESD-EYVQCGLVDMYGKCRLLRDAERVF 277
+ L AC G + + GR N+++ G+ + C +VD+ + LL AE +
Sbjct: 537 AALFACSHSGKLKE----GRSYFTNMIQDYGVSPTLAHYDC-VVDLLCRTGLLGRAEELI 591
Query: 278 ELIVDKKNIASWNAMLVG 295
+ + + + +W +L
Sbjct: 592 DSMPFEPSAVTWTTLLAA 609
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 81/186 (43%), Gaps = 9/186 (4%)
Query: 157 SLINFYGKFRCLEDADFVFS--QLKRHNTVVWTAKIVNNCREGHFHQVFNDFKE-MGRER 213
+L++ Y K L+DA VF + +WTA + GH Q ++ +
Sbjct: 65 ALVDMYSKCGSLDDARRVFDDYSVDSKRMALWTAMVSGYALHGHSRQALELYQRFLSVSS 124
Query: 214 IKKNSYTFSSVLKACGGVD--DDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLR 271
++ S + AC + DDG R +HA I L+ ++ GLV+MYG+C+ L
Sbjct: 125 EPPDTVMLLSAITACSSAEFLDDG---RAIHAQISSRELDHHTHLGNGLVNMYGRCKELH 181
Query: 272 DAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
A + FE I KN+ SWN ++ Y + G A + M G+ + AC
Sbjct: 182 RARKAFEKIT-AKNLVSWNVIIGAYAQEGHRGHAMELFQRMDPEGVAADAVTFLHVLDAC 240
Query: 332 SSISAS 337
+ A+
Sbjct: 241 GGVEAA 246
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 246 VKIGLESDEYVQCGLVDMYGKCRLLRDAERVF-ELIVDKKNIASWNAMLVGYIRNG 300
V + E D+ V LVDMY KC L DA RVF + VD K +A W AM+ GY +G
Sbjct: 52 VAVAGEEDDLVATALVDMYSKCGSLDDARRVFDDYSVDSKRMALWTAMVSGYALHG 107
>gi|302805448|ref|XP_002984475.1| hypothetical protein SELMODRAFT_180944 [Selaginella moellendorffii]
gi|300147863|gb|EFJ14525.1| hypothetical protein SELMODRAFT_180944 [Selaginella moellendorffii]
Length = 592
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 89/289 (30%), Positives = 144/289 (49%), Gaps = 11/289 (3%)
Query: 48 FLNRLLL-MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR 106
FL LL+ M+ CG+L+ AR +FD MPLR+ SWA++I YV QE + L+ ++
Sbjct: 48 FLGNLLVQMYRDCGRLEDARAVFDSMPLRNEFSWAIIISAYVGAGKEQEALCLYRALV-- 105
Query: 107 KKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166
+ + A+I L AC +E G ++H + K G +++ L +L+ Y K
Sbjct: 106 -RSSTEIQPDAFIFSSALAACARLKCLEQGLEIHEQIVKRGIKQDVGLQNALVTMYAKCG 164
Query: 167 CLEDADFVFSQLKRHNTVV--WTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
++ A VF ++ + VV W A I + G Q F+ M E ++ + T+ SV
Sbjct: 165 RIDRAKQVFDRITHRDVVVISWNAMIAGFGQNGRPKQALELFRRMDLEGLQPSRMTYCSV 224
Query: 225 LKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
L AC + + GR + + + L D V + +MYGKC L A + F L + +
Sbjct: 225 LDACANL-TASSLGRII-CDGMDEALAKDISVANSICNMYGKCGLPELARQTF-LEMTYR 281
Query: 285 NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQE-SLINDLRIACS 332
++ SW A++ Y +NG EA +M +G++ +LIN L ACS
Sbjct: 282 DVVSWTAIIAAYAQNGYSSEALDIFRIMVQAGVEPNGITLINTLS-ACS 329
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 107/223 (47%), Gaps = 10/223 (4%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
+L+ C + +E G++VH + G +R+ L L+ Y LEDA VF + N
Sbjct: 18 ILRKCARSRLLEDGRRVHARIIHSGHTRDRFLGNLLVQMYRDCGRLEDARAVFDSMPLRN 77
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRE--RIKKNSYTFSSVLKACGGVDDDGNC--- 237
W I G + ++ + R I+ +++ FSS L AC + C
Sbjct: 78 EFSWAIIISAYVGAGKEQEALCLYRALVRSSTEIQPDAFIFSSALAACARL----KCLEQ 133
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA-SWNAMLVGY 296
G ++H IVK G++ D +Q LV MY KC + A++VF+ I + + SWNAM+ G+
Sbjct: 134 GLEIHEQIVKRGIKQDVGLQNALVTMYAKCGRIDRAKQVFDRITHRDVVVISWNAMIAGF 193
Query: 297 IRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKI 339
+NG +A + M G+Q + AC++++AS +
Sbjct: 194 GQNGRPKQALELFRRMDLEGLQPSRMTYCSVLDACANLTASSL 236
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 76/291 (26%), Positives = 136/291 (46%), Gaps = 21/291 (7%)
Query: 12 MYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDE 71
+++ + C K E+ I KR IK + N L+ M+ CG++D A+Q+FD
Sbjct: 117 IFSSALAACARLKCLEQGLEIHEQIVKR-GIKQDVGLQNALVTMYAKCGRIDRAKQVFDR 175
Query: 72 MPLRDFN--SWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVC-VLKACV 128
+ RD SW MI G+ ++ + LF M + + P+ + C VL AC
Sbjct: 176 ITHRDVVVISWNAMIAGFGQNGRPKQALELFRRM------DLEGLQPSRMTYCSVLDACA 229
Query: 129 CTMNMELGKQV-HGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWT 187
LG+ + G+ L +++IS+ S+ N YGK E A F ++ + V WT
Sbjct: 230 NLTASSLGRIICDGMDEAL--AKDISVANSICNMYGKCGLPELARQTFLEMTYRDVVSWT 287
Query: 188 AKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--GGVDDDGNCGRQMHANI 245
A I + G+ + + F+ M + ++ N T + L AC G + D+G+ + +++
Sbjct: 288 AIIAAYAQNGYSSEALDIFRIMVQAGVEPNGITLINTLSACSHGALFDEGS---DIFSSL 344
Query: 246 VK---IGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
V G+ ++E +D+ G+ L+DAE + + K +W ++L
Sbjct: 345 VSGDYYGVTANESHFLCAIDLLGRAGYLKDAETLITKMPFKAGAVAWTSLL 395
>gi|302757275|ref|XP_002962061.1| hypothetical protein SELMODRAFT_76226 [Selaginella moellendorffii]
gi|300170720|gb|EFJ37321.1| hypothetical protein SELMODRAFT_76226 [Selaginella moellendorffii]
Length = 847
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 84/293 (28%), Positives = 139/293 (47%), Gaps = 13/293 (4%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLR----DFNSWAVMIVGYVDVADYQ 94
++ PT++ ++ + G ++ A ++F+ M L+ D +W M+ Y + +
Sbjct: 130 KLTSNPTVICSTAMIDAYAQNGHIEQAAEIFERMQLQVLDPDLIAWTAMMTAYNQLGHAR 189
Query: 95 ECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISL 154
E + LF RK L + V + AC ++E G +H L + +
Sbjct: 190 EALLLF-----RKMDLQGLEPDRFAFVAAIDACSSIPSLEQGTVLHSRLLASSVECDGVV 244
Query: 155 TGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERI 214
+L+NFY K + ++ +FS +K N V W+A + + GH F+EM + +
Sbjct: 245 GNALLNFYAKAGLVHESRSLFSSMKVKNVVTWSAIVAAYAQNGHHEPAVELFREMLLDGV 304
Query: 215 KKNSYTFSSVLKAC--GGVDDDGNCGRQMHANIVK-IGLESDEYVQCGLVDMYGKCRLLR 271
N TF S+L +C G+ D GR++HA I+K D V LV+MYG+C +
Sbjct: 305 APNKVTFVSLLFSCSHAGLIKDLARGRKIHAEILKSTAAAGDVVVATALVNMYGRCGSVS 364
Query: 272 DAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLI 324
DA+ VF+ + +NI SWNAMLV Y N +EA +F M G ++ I
Sbjct: 365 DAKTVFDEM-QHRNITSWNAMLVTYSLNQRSLEALRFFRTMLLEGEGVKPDAI 416
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 81/314 (25%), Positives = 136/314 (43%), Gaps = 10/314 (3%)
Query: 24 KDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVM 83
KD A ++ I K ++ L+ M+ CG + A+ +FDEM R+ SW M
Sbjct: 325 KDLARGRKIHAEILKSTAAAGDVVVATALVNMYGRCGSVSDAKTVFDEMQHRNITSWNAM 384
Query: 84 IVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGL 142
+V Y E + F M+ +G V P A V AC ++ ++H
Sbjct: 385 LVTYSLNQRSLEALRFFRTMLLEGEG----VKPDAITFVSAADACGMMGDLSRAVEIHSR 440
Query: 143 LFKLGSSR--NISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFH 200
+ + S ++ L +LI YG R L DA V Q+ R N + WT+ I+ +
Sbjct: 441 ISQSWPSNQTDVVLGSALIKMYGNCRRLADAAQVLDQMPRTNVISWTSMILACEQNEDNE 500
Query: 201 QVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGL 260
++ M K + T +V+KA + D G + HA G + V L
Sbjct: 501 AAIRVYRAMQLHGHKPDPVTMVTVIKAAANLHDLKR-GIEFHAQAAAFGFATSTVVGNAL 559
Query: 261 VDMYGKCRLLRDAERVFELIVDK--KNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
V +YG L+ AE VF+ ++ + +++ +WN+ML + +NGL +A M G
Sbjct: 560 VTLYGTSGDLQAAENVFKELLQQSVEDVVTWNSMLSAWNQNGLPNQALGTFQRMLHHGRH 619
Query: 319 IQESLINDLRIACS 332
++ ++ AC+
Sbjct: 620 PDKTTFVNILNACA 633
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 101/213 (47%), Gaps = 8/213 (3%)
Query: 132 NMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIV 191
N++ G+ VH + G R+ L LI YG+ R + DA VF + R N WT IV
Sbjct: 10 NLDAGRAVHLQMITSGYHRDRYLCNLLIQMYGRCRSVHDAIAVFHTVSRKNVFTWTILIV 69
Query: 192 NNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDG-NCGRQMHANIVKIGL 250
+ G F + F+EM ++ + +TFS++L+AC + + G+ +H+ I + GL
Sbjct: 70 AHTHNGLFFEAVELFREMDVHGVQSDEFTFSAILEACSNLGLAFLSLGKTIHSRIHQQGL 129
Query: 251 E--SDEYVQC--GLVDMYGKCRLLRDAERVFE---LIVDKKNIASWNAMLVGYIRNGLYV 303
+ S+ V C ++D Y + + A +FE L V ++ +W AM+ Y + G
Sbjct: 130 KLTSNPTVICSTAMIDAYAQNGHIEQAAEIFERMQLQVLDPDLIAWTAMMTAYNQLGHAR 189
Query: 304 EATKFLYLMKASGIQIQESLINDLRIACSSISA 336
EA M G++ ACSSI +
Sbjct: 190 EALLLFRKMDLQGLEPDRFAFVAAIDACSSIPS 222
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 64/293 (21%), Positives = 133/293 (45%), Gaps = 17/293 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ C + A +F + ++ +W ++IV + + E + LF EM
Sbjct: 34 NLLIQMYGRCRSVHDAIAVFHTVSRKNVFTWTILIVAHTHNGLFFEAVELFREMDVHGVQ 93
Query: 110 HMLLVFPAWIIVCVLKAC--VCTMNMELGKQVHGLL----FKLGSSRNISLTGSLINFYG 163
F A +L+AC + + LGK +H + KL S+ + + ++I+ Y
Sbjct: 94 SDEFTFSA-----ILEACSNLGLAFLSLGKTIHSRIHQQGLKLTSNPTVICSTAMIDAYA 148
Query: 164 KFRCLEDADFVFSQLKRH----NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSY 219
+ +E A +F +++ + + WTA + + GH + F++M + ++ + +
Sbjct: 149 QNGHIEQAAEIFERMQLQVLDPDLIAWTAMMTAYNQLGHAREALLLFRKMDLQGLEPDRF 208
Query: 220 TFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFEL 279
F + + AC + G +H+ ++ +E D V L++ Y K L+ ++ +F
Sbjct: 209 AFVAAIDACSSIPSLEQ-GTVLHSRLLASSVECDGVVGNALLNFYAKAGLVHESRSLFSS 267
Query: 280 IVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+ KN+ +W+A++ Y +NG + A + M G+ + L +CS
Sbjct: 268 M-KVKNVVTWSAIVAAYAQNGHHEPAVELFREMLLDGVAPNKVTFVSLLFSCS 319
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/248 (22%), Positives = 95/248 (38%), Gaps = 12/248 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEM---PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR 106
N L+ ++ + G L A +F E+ + D +W M+ + + + F M+
Sbjct: 557 NALVTLYGTSGDLQAAENVFKELLQQSVEDVVTWNSMLSAWNQNGLPNQALGTFQRMLHH 616
Query: 107 KKGHMLLVFPAWIIVCVLKACVCTMNMEL-GKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
+ F V +L AC + L G ++H L G +I + +L++ Y +
Sbjct: 617 GRHPDKTTF-----VNILNACAGDPSKLLQGVKIHALAAACGLDSDIDVANTLLHMYSRC 671
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
L A VF L + N V W+A G F+ M I+ N+ TF S+L
Sbjct: 672 GNLSRARKVFHALTQKNVVSWSAMAAACAHNGDADGALQAFRGMLHGGIQPNAVTFISIL 731
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
C ++A L+ L+D+ + AE EL N
Sbjct: 732 SGCSHTGLMDEAVSYLYAMSSDHNLKPTVQHYACLLDLLARAGKFHRAE---ELATHLPN 788
Query: 286 IASWNAML 293
+WN++L
Sbjct: 789 PVAWNSLL 796
>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
Length = 720
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 89/289 (30%), Positives = 139/289 (48%), Gaps = 14/289 (4%)
Query: 48 FLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRK 107
F N LL M+ CG LD+A+ +F EM R S+ MI GY E + LF EM +
Sbjct: 182 FCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEG 241
Query: 108 KGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166
+ P + + VL C ++ GK+VH + + +I ++ +L++ Y K
Sbjct: 242 ------ISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCG 295
Query: 167 CLEDADFVFSQLKRHNTVVWTAKI---VNNCREGHFHQVFNDFKEMGRERIKKNSYTFSS 223
+++A+ VFS+++ + + W I NC +FN E +R + T +
Sbjct: 296 SMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLE--EKRFSPDERTVAC 353
Query: 224 VLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
VL AC + + GR++H I++ G SD +V LVDMY KC L A +F+ I
Sbjct: 354 VLPACASL-SAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIA-S 411
Query: 284 KNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
K++ SW M+ GY +G EA M+ +GI+ E L ACS
Sbjct: 412 KDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACS 460
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 90/292 (30%), Positives = 148/292 (50%), Gaps = 16/292 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ ++ ++D+AR++FDEM RD SW +I GYV ++ +++F +M+
Sbjct: 83 NSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSG-- 140
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ IV V C + + LG+ VH + K SR +L++ Y K L+
Sbjct: 141 ---IEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLD 197
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A VF ++ + V +T+ I REG + F+EM E I + YT ++VL C
Sbjct: 198 SAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCA 257
Query: 230 G---VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVF-ELIVDKKN 285
+D+ G+++H I + L D +V L+DMY KC +++AE VF E+ V K+
Sbjct: 258 RYRLLDE----GKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRV--KD 311
Query: 286 IASWNAMLVGYIRNGLYVEA-TKFLYLMKASGIQIQESLINDLRIACSSISA 336
I SWN ++ GY +N EA + F L++ E + + AC+S+SA
Sbjct: 312 IISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSA 363
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 114/253 (45%), Gaps = 13/253 (5%)
Query: 69 FDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACV 128
FDE+ + W +++ D+ I LF +MM + ++ CV K+
Sbjct: 1 FDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSG-----VEMDSYTFSCVSKSFS 55
Query: 129 CTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTA 188
++ G+Q+HG + K G S+ SL+ FY K + ++ A VF ++ + + W +
Sbjct: 56 SLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNS 115
Query: 189 KIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDG---NCGRQMHANI 245
I G + + F +M I+ + T SV C D + GR +H+
Sbjct: 116 IINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCA----DSRLISLGRAVHSIG 171
Query: 246 VKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEA 305
VK ++ L+DMY KC L A+ VF + D +++ S+ +M+ GY R GL EA
Sbjct: 172 VKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSD-RSVVSYTSMIAGYAREGLAGEA 230
Query: 306 TKFLYLMKASGIQ 318
K M+ GI
Sbjct: 231 VKLFEEMEEEGIS 243
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 110/248 (44%), Gaps = 8/248 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ CG + A +F EM ++D SW +I GY E ++LF +++ K+
Sbjct: 285 NALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKR- 343
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ CVL AC + G+++HG + + G + + SL++ Y K L
Sbjct: 344 ---FSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALL 400
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC- 228
A +F + + V WT I G + F +M + I+ + +F S+L AC
Sbjct: 401 LAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACS 460
Query: 229 -GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
G+ D+G + + KI + Y C +VDM + L A R E + +
Sbjct: 461 HSGLVDEGWRFFNIMRHECKIEPTVEHYA-C-IVDMLARTGDLIKAYRFIENMPIPPDAT 518
Query: 288 SWNAMLVG 295
W A+L G
Sbjct: 519 IWGALLCG 526
>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
mitochondrial [Vitis vinifera]
Length = 623
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 95/325 (29%), Positives = 160/325 (49%), Gaps = 24/325 (7%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRV---NIKPTLLFLNRLLLMHVSCGQLDTARQLF 69
Y+ LIK C+ + GA + + + + +P + +N LL M+V L+ A LF
Sbjct: 58 YSELIKCCS----ARGAVQEGKRVHEHIFCKGYEPKMFVVNTLLNMYVKFNLLEEAEDLF 113
Query: 70 DEMPLRDFNSWAVMIVGYVDVADYQ--ECITLFAEMMKRKKGHMLLVFPAWIIVCVLKAC 127
DEMP R+ SW MI Y + + + +C+ L M + + + + VL+AC
Sbjct: 114 DEMPERNVVSWTTMISAYSNKLNDKALKCLIL---MFREGVRPNMFTYSS-----VLRAC 165
Query: 128 VCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWT 187
N+ +Q+H + K G ++ + +LI+ Y K+ L++A VF ++ + VVW
Sbjct: 166 DGLPNL---RQLHCGIIKTGLESDVFVRSALIDVYSKWSDLDNALGVFDEMPTRDLVVWN 222
Query: 188 AKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVK 247
+ I + ++ N FK M R + T +SVL+AC G+ GRQ+H +++K
Sbjct: 223 SIIGGFAQNSDGNEALNLFKRMKRAGFLADQATLTSVLRACTGL-ALLELGRQVHVHVLK 281
Query: 248 IGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATK 307
+ D + L+DMY KC L DA F +V+ K++ SW+ M+ G +NG +A +
Sbjct: 282 --FDQDLILNNALIDMYCKCGSLEDANSAFSRMVE-KDVISWSTMVAGLAQNGYSRQALE 338
Query: 308 FLYLMKASGIQIQESLINDLRIACS 332
MK SG + + + ACS
Sbjct: 339 LFESMKESGSRPNYITVLGVLFACS 363
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 72/150 (48%), Gaps = 9/150 (6%)
Query: 189 KIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC---GGVDDDGNCGRQMHANI 245
+ N C + H+ M R + ++ T+S ++K C G V + G+++H +I
Sbjct: 26 EFANFCHQWDLHRAMRAMDAMERHGVFADAITYSELIKCCSARGAVQE----GKRVHEHI 81
Query: 246 VKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEA 305
G E +V L++MY K LL +AE +F+ + + +N+ SW M+ Y N L +A
Sbjct: 82 FCKGYEPKMFVVNTLLNMYVKFNLLEEAEDLFDEMPE-RNVVSWTTMISAY-SNKLNDKA 139
Query: 306 TKFLYLMKASGIQIQESLINDLRIACSSIS 335
K L LM G++ + + AC +
Sbjct: 140 LKCLILMFREGVRPNMFTYSSVLRACDGLP 169
>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
Length = 694
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 76/297 (25%), Positives = 141/297 (47%), Gaps = 11/297 (3%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL--RDFNSWAVMIVGYVDVADYQEC 96
R+ + N L+ ++ C +L +AR +F+ +PL R SW ++ Y + E
Sbjct: 147 RLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEA 206
Query: 97 ITLFAEMMKRKKGHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLT 155
+ +F+ M K + V P W+ +V VL A C +++ G+ +H + K+G L
Sbjct: 207 LEIFSHMRK------MDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLL 260
Query: 156 GSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIK 215
SL Y K + A +F ++K N ++W A I + G+ + + F EM + ++
Sbjct: 261 ISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVR 320
Query: 216 KNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAER 275
++ + +S + AC V R M+ + + D ++ L+DM+ KC + A
Sbjct: 321 PDTISITSAISACAQVGSLEQ-ARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARL 379
Query: 276 VFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
VF+ +D +++ W+AM+VGY +G EA M+ G+ + L +AC+
Sbjct: 380 VFDRTLD-RDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACN 435
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 87/317 (27%), Positives = 144/317 (45%), Gaps = 12/317 (3%)
Query: 25 DSAGAFELLNHIRKRV---NIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWA 81
DSA L I R+ ++ + + +L+ S G + ARQ+FD++P W
Sbjct: 29 DSATHKAQLKQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWN 88
Query: 82 VMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHG 141
+I GY +Q+ + +++ M + FP +LKAC ++++G+ VH
Sbjct: 89 AIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPH-----LLKACSGLSHLQMGRFVHA 143
Query: 142 LLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFS--QLKRHNTVVWTAKIVNNCREGHF 199
+F+LG ++ + LI Y K R L A VF L V WTA + + G
Sbjct: 144 QVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEP 203
Query: 200 HQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCG 259
+ F M + +K + SVL A + D GR +HA++VK+GLE + +
Sbjct: 204 MEALEIFSHMRKMDVKPDWVALVSVLNAFTCLQDLKQ-GRSIHASVVKMGLEIEPDLLIS 262
Query: 260 LVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQI 319
L MY KC + A+ +F+ + N+ WNAM+ GY +NG EA + M ++
Sbjct: 263 LNTMYAKCGQVATAKILFDKM-KSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRP 321
Query: 320 QESLINDLRIACSSISA 336
I AC+ + +
Sbjct: 322 DTISITSAISACAQVGS 338
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/261 (26%), Positives = 121/261 (46%), Gaps = 14/261 (5%)
Query: 36 IRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQE 95
++ + I+P LL L M+ CGQ+ TA+ LFD+M + W MI GY +E
Sbjct: 249 VKMGLEIEPDLLI--SLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYARE 306
Query: 96 CITLFAEMMKRKKGHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISL 154
I +F EM+ + V P I I + AC ++E + ++ + + ++ +
Sbjct: 307 AIDMFHEMINKD------VRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFI 360
Query: 155 TGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERI 214
+ +LI+ + K +E A VF + + VVW+A IV G + + ++ M R +
Sbjct: 361 SSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGV 420
Query: 215 KKNSYTFSSVLKAC--GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRD 272
N TF +L AC G+ +G + A+ KI + Y C ++D+ G+ L
Sbjct: 421 HPNDVTFLGLLMACNHSGMVREGWWFFNLMAD-HKINPQQQHYA-C-VIDLLGRAGHLDQ 477
Query: 273 AERVFELIVDKKNIASWNAML 293
A V + + + + W A+L
Sbjct: 478 AYEVIKCMPVQPGVTVWGALL 498
>gi|413917687|gb|AFW57619.1| putative pentatricopeptide repeat family protein [Zea mays]
Length = 611
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 89/299 (29%), Positives = 139/299 (46%), Gaps = 16/299 (5%)
Query: 34 NHIR---KRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDV 90
+H R +R ++ ++ N L+ M+ CG A ++FDEM LRD SW ++
Sbjct: 42 SHFRLCPRRSCLQHVVVVWNSLVAMYGRCGCRGDAVRVFDEMALRDSVSWNSLLSASASA 101
Query: 91 ADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACV----CTMNMELGKQVHGLLFKL 146
D + L M+ G + VL AC T + L VHGL
Sbjct: 102 TD---ALALLRRMLSAAPGAAACDHA--TLTTVLSACARAGGGTGSASL-PAVHGLAASC 155
Query: 147 GSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDF 206
G +S+ +LI Y + A+ VF + N + WTA + R + + + F
Sbjct: 156 GLDAEVSVGNALITAYFECSSPGSAERVFDGMADRNVITWTAMVSGMARAERYSESLSLF 215
Query: 207 KEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGK 266
++M R + N ++SS L AC G G+Q+H VK GLE+D +V+ L+DMY K
Sbjct: 216 RQM-RRAVDANRASYSSSLLACAG-SRAAREGQQIHGLAVKAGLETDLHVESELMDMYSK 273
Query: 267 CRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLIN 325
C L+ DA RVF D + S +L G+ +NGL EA + M GI++ ++++
Sbjct: 274 CGLMEDALRVFRSGQDPDEV-SLTVILAGFAQNGLEEEAFRLFAEMVGKGIRVDANMVS 331
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 78/289 (26%), Positives = 133/289 (46%), Gaps = 8/289 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ + C +A ++FD M R+ +W M+ G Y E ++LF +M +
Sbjct: 165 NALITAYFECSSPGSAERVFDGMADRNVITWTAMVSGMARAERYSESLSLFRQMRRAVDA 224
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ + L AC + G+Q+HGL K G ++ + L++ Y K +E
Sbjct: 225 NRASYSSS------LLACAGSRAAREGQQIHGLAVKAGLETDLHVESELMDMYSKCGLME 278
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
DA VF + + V T + + G + F F EM + I+ ++ S+VL A
Sbjct: 279 DALRVFRSGQDPDEVSLTVILAGFAQNGLEEEAFRLFAEMVGKGIRVDANMVSAVLGAF- 337
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
G G+Q+HA +K + YV GL++MY KC L+++ RVF+ KN +W
Sbjct: 338 GASAPFALGKQIHALAIKRCFGGNTYVCNGLINMYSKCGELQESIRVFD-GTPSKNTVTW 396
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASK 338
N+++ Y R+G E M+A G++ + L CS + + +
Sbjct: 397 NSIIAAYARHGHGWEVFGLFESMEADGVKPTDVTFLSLLHGCSHVGSPR 445
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 112/256 (43%), Gaps = 7/256 (2%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
+ ++ L + L+ M+ CG ++ A ++F D S V++ G+ +E
Sbjct: 254 KAGLETDLHVESELMDMYSKCGLMEDALRVFRSGQDPDEVSLTVILAGFAQNGLEEEAFR 313
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
LFAEM+ + + A ++ VL A + LGKQ+H L K N + L
Sbjct: 314 LFAEMVGKG-----IRVDANMVSAVLGAFGASAPFALGKQIHALAIKRCFGGNTYVCNGL 368
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
IN Y K L+++ VF NTV W + I R GH +VF F+ M + +K
Sbjct: 369 INMYSKCGELQESIRVFDGTPSKNTVTWNSIIAAYARHGHGWEVFGLFESMEADGVKPTD 428
Query: 219 YTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESD-EYVQCGLVDMYGKCRLLRDAERVF 277
TF S+L C V + + K G+ E+ C +VDM G+ L DA+
Sbjct: 429 VTFLSLLHGCSHVGSPRKGLEILDSMPSKYGIHPKVEHYAC-VVDMLGRASQLDDAKAFI 487
Query: 278 ELIVDKKNIASWNAML 293
E K + W +++
Sbjct: 488 EDGPFKDSALLWQSLM 503
>gi|356567156|ref|XP_003551787.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g02330-like [Glycine max]
Length = 852
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 83/306 (27%), Positives = 145/306 (47%), Gaps = 12/306 (3%)
Query: 29 AFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYV 88
AF++ + + +R ++ N L+ + G + A+ LFD MP RD SW ++ Y+
Sbjct: 60 AFKVFDRMPQR-----DVISWNTLIFGYAGIGNMGFAQSLFDSMPERDVVSWNSLLSCYL 114
Query: 89 DVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGS 148
++ I +F M K H F +LKAC + LG QVH L ++G
Sbjct: 115 HNGVNRKSIEIFVRMRSLKIPHDYATF-----AVILKACSGIEDYGLGLQVHCLAIQMGF 169
Query: 149 SRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKE 208
++ +L++ Y K + L+DA VF ++ N V W+A I + F + FK+
Sbjct: 170 ENDVVTGSALVDMYSKCKKLDDAFRVFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKD 229
Query: 209 MGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCR 268
M + + + T++SV ++C G+ G Q+H + +K D + +DMY KC
Sbjct: 230 MLKVGMGVSQSTYASVFRSCAGL-SAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCE 288
Query: 269 LLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLR 328
+ DA +VF + + S+NA++VGY R ++A ++ + + E ++
Sbjct: 289 RMFDAWKVFNTLPNPPR-QSYNAIIVGYARQDQGLKALDIFQSLQRNNLGFDEISLSGAL 347
Query: 329 IACSSI 334
ACS I
Sbjct: 348 TACSVI 353
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 140/285 (49%), Gaps = 7/285 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N +L M+ CG L A +F+EM RD SW +I + + + ++LF M++
Sbjct: 379 NTILDMYGKCGALMEACLIFEEMERRDAVSWNAIIAAHEQNEEIVKTLSLFVSMLRSTME 438
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ + V+KAC + G ++HG + K G + + +L++ YGK L
Sbjct: 439 PDDFTYGS-----VVKACAGQQALNYGTEIHGRIIKSGMGLDWFVGSALVDMYGKCGMLM 493
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
+A+ + ++L+ TV W + I + F +M I ++YT+++VL C
Sbjct: 494 EAEKIHARLEEKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGIIPDNYTYATVLDVCA 553
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ G+Q+HA I+K+ L SD Y+ LVDMY KC ++D+ +FE K++ +W
Sbjct: 554 NMATI-ELGKQIHAQILKLQLHSDVYIASTLVDMYSKCGNMQDSRLMFEK-APKRDYVTW 611
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
+AM+ Y +GL +A M+ ++ ++ + AC+ +
Sbjct: 612 SAMICAYAYHGLGEKAINLFEEMQLLNVKPNHTIFISVLRACAHM 656
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/265 (28%), Positives = 130/265 (49%), Gaps = 7/265 (2%)
Query: 53 LLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHML 112
L M+ C ++ A ++F+ +P S+ +IVGY + + +F + + G
Sbjct: 281 LDMYAKCERMFDAWKVFNTLPNPPRQSYNAIIVGYARQDQGLKALDIFQSLQRNNLG--- 337
Query: 113 LVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDAD 172
F + L AC G Q+HGL K G NI + ++++ YGK L +A
Sbjct: 338 --FDEISLSGALTACSVIKRHLEGIQLHGLAVKCGLGFNICVANTILDMYGKCGALMEAC 395
Query: 173 FVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVD 232
+F +++R + V W A I + + + + F M R ++ + +T+ SV+KAC G
Sbjct: 396 LIFEEMERRDAVSWNAIIAAHEQNEEIVKTLSLFVSMLRSTMEPDDFTYGSVVKACAG-Q 454
Query: 233 DDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAM 292
N G ++H I+K G+ D +V LVDMYGKC +L +AE++ + ++K SWN++
Sbjct: 455 QALNYGTEIHGRIIKSGMGLDWFVGSALVDMYGKCGMLMEAEKIHARL-EEKTTVSWNSI 513
Query: 293 LVGYIRNGLYVEATKFLYLMKASGI 317
+ G+ A ++ M GI
Sbjct: 514 ISGFSSQKQSENAQRYFSQMLEMGI 538
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 82/336 (24%), Positives = 156/336 (46%), Gaps = 8/336 (2%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCG 60
M +L +P + ++K C+ +D ++ + + ++ + ++ + L+ M+ C
Sbjct: 129 MRSLKIPHDYATFAVILKACSGIEDYGLGLQV-HCLAIQMGFENDVVTGSALVDMYSKCK 187
Query: 61 QLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWII 120
+LD A ++F EMP R+ W+ +I GYV + E + LF +M+K G + +
Sbjct: 188 KLDDAFRVFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYAS--- 244
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
V ++C +LG Q+HG K + + + + ++ Y K + DA VF+ L
Sbjct: 245 --VFRSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCERMFDAWKVFNTLPN 302
Query: 181 HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQ 240
+ A IV R+ + + F+ + R + + + S L AC + G Q
Sbjct: 303 PPRQSYNAIIVGYARQDQGLKALDIFQSLQRNNLGFDEISLSGALTACSVIKRHLE-GIQ 361
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
+H VK GL + V ++DMYGKC L +A +FE + ++++ SWNA++ + +N
Sbjct: 362 LHGLAVKCGLGFNICVANTILDMYGKCGALMEACLIFEEM-ERRDAVSWNAIIAAHEQNE 420
Query: 301 LYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
V+ M S ++ + + AC+ A
Sbjct: 421 EIVKTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQA 456
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 112/248 (45%), Gaps = 33/248 (13%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
+L+ C + GKQVH + G I + L+ FY K + A VF ++ + +
Sbjct: 12 ILQKCSNLKALNPGKQVHTQMIVTGFVPTIYVANCLLQFYCKSSKMNYAFKVFDRMPQRD 71
Query: 183 TVVWTAKIVNNCREGH--FHQVFND-----------------------------FKEMGR 211
+ W I G+ F Q D F M
Sbjct: 72 VISWNTLIFGYAGIGNMGFAQSLFDSMPERDVVSWNSLLSCYLHNGVNRKSIEIFVRMRS 131
Query: 212 ERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLR 271
+I + TF+ +LKAC G++D G G Q+H +++G E+D LVDMY KC+ L
Sbjct: 132 LKIPHDYATFAVILKACSGIEDYG-LGLQVHCLAIQMGFENDVVTGSALVDMYSKCKKLD 190
Query: 272 DAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
DA RVF + ++ N+ W+A++ GY++N ++E K M G+ + +S + +C
Sbjct: 191 DAFRVFREMPER-NLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVFRSC 249
Query: 332 SSISASKI 339
+ +SA K+
Sbjct: 250 AGLSAFKL 257
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 128/285 (44%), Gaps = 14/285 (4%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
Y ++K C Q+ E+ I K + + L+ M+ CG L A ++ +
Sbjct: 444 YGSVVKACAGQQALNYGTEIHGRIIKS-GMGLDWFVGSALVDMYGKCGMLMEAEKIHARL 502
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN 132
+ SW +I G+ + F++M++ M ++ + VL C
Sbjct: 503 EEKTTVSWNSIISGFSSQKQSENAQRYFSQMLE-----MGIIPDNYTYATVLDVCANMAT 557
Query: 133 MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192
+ELGKQ+H + KL ++ + +L++ Y K ++D+ +F + + + V W+A I
Sbjct: 558 IELGKQIHAQILKLQLHSDVYIASTLVDMYSKCGNMQDSRLMFEKAPKRDYVTWSAMICA 617
Query: 193 NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC---GGVDDDGNCGRQMHANIVKIG 249
G + N F+EM +K N F SVL+AC G VD + ++M + G
Sbjct: 618 YAYHGLGEKAINLFEEMQLLNVKPNHTIFISVLRACAHMGYVDKGLHYFQKM---LSHYG 674
Query: 250 LESD-EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
L+ E+ C +VD+ G+ + +A ++ E + + + W +L
Sbjct: 675 LDPQMEHYSC-MVDLLGRSGQVNEALKLIESMPFEADDVIWRTLL 718
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 72/161 (44%), Gaps = 12/161 (7%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
++ + + + L+ M+ CG + +R +F++ P RD+ +W+ MI Y ++ I
Sbjct: 570 KLQLHSDVYIASTLVDMYSKCGNMQDSRLMFEKAPKRDYVTWSAMICAYAYHGLGEKAIN 629
Query: 99 LFAEM--MKRKKGHMLLVFPAWIIVCVLKACVCTMNMELG-KQVHGLLFKLGSSRNISLT 155
LF EM + K H I + VL+AC ++ G +L G +
Sbjct: 630 LFEEMQLLNVKPNHT-------IFISVLRACAHMGYVDKGLHYFQKMLSHYGLDPQMEHY 682
Query: 156 GSLINFYGKFRCLEDA-DFVFSQLKRHNTVVWTAKIVNNCR 195
+++ G+ + +A + S + V+W +++NC+
Sbjct: 683 SCMVDLLGRSGQVNEALKLIESMPFEADDVIWRT-LLSNCK 722
>gi|242084292|ref|XP_002442571.1| hypothetical protein SORBIDRAFT_08g022230 [Sorghum bicolor]
gi|241943264|gb|EES16409.1| hypothetical protein SORBIDRAFT_08g022230 [Sorghum bicolor]
Length = 698
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 80/288 (27%), Positives = 141/288 (48%), Gaps = 10/288 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL ++ CG+L AR++FD MP+R+ SW +I GY + + + LF EM + +
Sbjct: 136 LLDVYAKCGRLSDARRVFDGMPVRNTVSWNALIAGYAESRKPAQAMELFLEMQRVE---- 191
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
LV +L L +Q+HG + K GS+ + + + I Y + D+
Sbjct: 192 -LVPDDATFAALLATVEGPSWYSLMQQLHGKIAKYGSALGLVVLNAAITAYSQCGAFADS 250
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRER-IKKNSYTFSSVLKACGG 230
+F ++ + + W + + G + F M RE ++ + Y+F+SV+ C
Sbjct: 251 RRIFDGIQSRDLISWNSMLGAYAYHGMDDEAMRFFVRMMRESGVQPDMYSFTSVVSVCSE 310
Query: 231 VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCR---LLRDAERVFELIVDKKNIA 287
D GR +H+ +VKIGLE +V ++ MY + ++ DA + F+ +V K +
Sbjct: 311 HGCDDRQGRSIHSLVVKIGLEGVTHVCNAMIAMYTRFTENCMMEDAYKCFDSLVFKDAV- 369
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
SWN+ML GY +GL +A +F M+A + E ++ +CS ++
Sbjct: 370 SWNSMLTGYSHHGLSSDALRFFRFMRAENVSTDEFALSAALRSCSDLA 417
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 119/259 (45%), Gaps = 10/259 (3%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L+ LN + + CG +R++FD + RD SW M+ Y E + F MM+
Sbjct: 231 LVVLNAAITAYSQCGAFADSRRIFDGIQSRDLISWNSMLGAYAYHGMDDEAMRFFVRMMR 290
Query: 106 RKKGHM-LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
+ F + + VC C + G+ +H L+ K+G + ++I Y +
Sbjct: 291 ESGVQPDMYSFTSVVSVCSEHGC----DDRQGRSIHSLVVKIGLEGVTHVCNAMIAMYTR 346
Query: 165 FR---CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTF 221
F +EDA F L + V W + + G F+ M E + + +
Sbjct: 347 FTENCMMEDAYKCFDSLVFKDAVSWNSMLTGYSHHGLSSDALRFFRFMRAENVSTDEFAL 406
Query: 222 SSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIV 281
S+ L++C + GRQ+H+ +++ G S+++V L+ MY KC ++ DA + FE
Sbjct: 407 SAALRSCSDLAVL-RLGRQVHSLVIQSGFSSNDFVSSSLIFMYSKCGMVGDARKSFEE-A 464
Query: 282 DKKNIASWNAMLVGYIRNG 300
DK + WN+M+ GY ++G
Sbjct: 465 DKGSSVPWNSMMFGYAQHG 483
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 76/273 (27%), Positives = 123/273 (45%), Gaps = 11/273 (4%)
Query: 50 NRLLLMHVSCGQ---LDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR 106
N+LL + + G L AR++FDE+P D SW ++ +V +++ L +M R
Sbjct: 30 NQLLTAYSASGPGSGLAAARRVFDEIPRPDAVSWNSLLAAHVAAGAHRDAWRLLKDMHAR 89
Query: 107 KKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166
L + + L++ ELG Q+ K G N+ +L++ Y K
Sbjct: 90 G-----LTASTFALGSALRSAAAARRPELGAQLQSFAVKSGLVDNVFSASALLDVYAKCG 144
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
L DA VF + NTV W A I Q F EM R + + TF+++L
Sbjct: 145 RLSDARRVFDGMPVRNTVSWNALIAGYAESRKPAQAMELFLEMQRVELVPDDATFAALLA 204
Query: 227 ACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
G + +Q+H I K G V + Y +C D+ R+F+ I +++
Sbjct: 205 TVEG-PSWYSLMQQLHGKIAKYGSALGLVVLNAAITAYSQCGAFADSRRIFDGI-QSRDL 262
Query: 287 ASWNAMLVGYIRNGLYVEATK-FLYLMKASGIQ 318
SWN+ML Y +G+ EA + F+ +M+ SG+Q
Sbjct: 263 ISWNSMLGAYAYHGMDDEAMRFFVRMMRESGVQ 295
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/234 (25%), Positives = 105/234 (44%), Gaps = 9/234 (3%)
Query: 62 LDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIV 121
++ A + FD + +D SW M+ GY + + F M + + +
Sbjct: 353 MEDAYKCFDSLVFKDAVSWNSMLTGYSHHGLSSDALRFFRFMRAEN-----VSTDEFALS 407
Query: 122 CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH 181
L++C + LG+QVH L+ + G S N ++ SLI Y K + DA F + +
Sbjct: 408 AALRSCSDLAVLRLGRQVHSLVIQSGFSSNDFVSSSLIFMYSKCGMVGDARKSFEEADKG 467
Query: 182 NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--GGVDDDGNCGR 239
++V W + + + G V + F EM ++ + TF ++L A GG+ D+G+
Sbjct: 468 SSVPWNSMMFGYAQHGQAQTVTDLFSEMLDHKVPLDHVTFVALLTAYSHGGLVDEGSEIL 527
Query: 240 QMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
KI L + Y CG VD+YG+ L A+ + E + + + W +L
Sbjct: 528 NSMETRYKIPLRMEHYA-CG-VDLYGRAGQLDKAKELIESMPFQPDAMVWMTLL 579
>gi|10092182|gb|AAG12601.1|AC068900_7 hypothetical protein; 7123-4412 [Arabidopsis thaliana]
Length = 861
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 87/358 (24%), Positives = 159/358 (44%), Gaps = 27/358 (7%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCG 60
M + ++ +Y +++ C + +L H K + + L M+ C
Sbjct: 230 MQKVNAGVSQSIYASVLRSCAALSELRLGGQLHAHALKS-DFAADGIVRTATLDMYAKCD 288
Query: 61 QLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWII 120
+ A+ LFD + S+ MI GY + + LF +M G F +
Sbjct: 289 NMQDAQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLG-----FDEISL 343
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
V +AC + G Q++GL K S ++ + + I+ YGK + L +A VF +++R
Sbjct: 344 SGVFRACALVKGLSEGLQIYGLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRR 403
Query: 181 HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQ 240
+ V W A I + + G ++ F M R RI+ + +TF S+LKAC G G +
Sbjct: 404 RDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSILKACTG--GSLGYGME 461
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA------------- 287
+H++IVK G+ S+ V C L+DMY KC ++ +AE++ + N++
Sbjct: 462 IHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRANVSGTMEELEKMHNKR 521
Query: 288 ------SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKI 339
SWN+++ GY+ +A M GI + + C++++++ +
Sbjct: 522 LQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGL 579
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/324 (24%), Positives = 154/324 (47%), Gaps = 12/324 (3%)
Query: 9 TTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQL 68
TT + CL++ T +D A + + + R ++ N+++ + + A
Sbjct: 40 TTFVLNCLLQVYTNSRDFVSASMVFDKMPLR-----DVVSWNKMINGYSKSNDMFKANSF 94
Query: 69 FDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACV 128
F+ MP+RD SW M+ GY+ + + I +F +M G + F +LK C
Sbjct: 95 FNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDM-----GREGIEFDGRTFAIILKVCS 149
Query: 129 CTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTA 188
+ LG Q+HG++ ++G ++ +L++ Y K + ++ VF + N+V W+A
Sbjct: 150 FLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIPEKNSVSWSA 209
Query: 189 KIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKI 248
I + FKEM + + ++SVL++C + + G Q+HA+ +K
Sbjct: 210 IIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAAL-SELRLGGQLHAHALKS 268
Query: 249 GLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKF 308
+D V+ +DMY KC ++DA+ +F+ + N S+NAM+ GY + +A
Sbjct: 269 DFAADGIVRTATLDMYAKCDNMQDAQILFD-NSENLNRQSYNAMITGYSQEEHGFKALLL 327
Query: 309 LYLMKASGIQIQESLINDLRIACS 332
+ + +SG+ E ++ + AC+
Sbjct: 328 FHRLMSSGLGFDEISLSGVFRACA 351
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 90/307 (29%), Positives = 144/307 (46%), Gaps = 36/307 (11%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N + M+ C L A ++FDEM RD SW +I + E + LF M++ +
Sbjct: 379 NAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIE 438
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
F + +LKAC ++ G ++H + K G + N S+ SLI+ Y K +E
Sbjct: 439 PDEFTFGS-----ILKACTGG-SLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIE 492
Query: 170 DADFVFSQL--------------KRHNT------VVWTAKI---VNNCREGHFHQVFNDF 206
+A+ + S+ K HN V W + I V + +F
Sbjct: 493 EAEKIHSRFFQRANVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRM 552
Query: 207 KEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGK 266
EMG I + +T+++VL C + G G+Q+HA ++K L+SD Y+ LVDMY K
Sbjct: 553 MEMG---ITPDKFTYATVLDTCANLASAG-LGKQIHAQVIKKELQSDVYICSTLVDMYSK 608
Query: 267 CRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQE-SLIN 325
C L D+ +FE + +++ +WNAM+ GY +G EA + M I+ + I+
Sbjct: 609 CGDLHDSRLMFEKSL-RRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFIS 667
Query: 326 DLRIACS 332
LR AC+
Sbjct: 668 ILR-ACA 673
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 98/186 (52%), Gaps = 2/186 (1%)
Query: 150 RNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEM 209
R++ +IN Y K + A+ F+ + + V W + + + G + F +M
Sbjct: 70 RDVVSWNKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDM 129
Query: 210 GRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRL 269
GRE I+ + TF+ +LK C ++D + G Q+H +V++G ++D L+DMY K +
Sbjct: 130 GREGIEFDGRTFAIILKVCSFLEDT-SLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKR 188
Query: 270 LRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRI 329
++ RVF+ I +K N SW+A++ G ++N L A KF M+ + +S+ +
Sbjct: 189 FVESLRVFQGIPEK-NSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLR 247
Query: 330 ACSSIS 335
+C+++S
Sbjct: 248 SCAALS 253
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 71/159 (44%), Gaps = 7/159 (4%)
Query: 79 SWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQ 138
SW +I GYV ++ LF MM+ M + + VL C + LGKQ
Sbjct: 528 SWNSIISGYVMKEQSEDAQMLFTRMME-----MGITPDKFTYATVLDTCANLASAGLGKQ 582
Query: 139 VHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGH 198
+H + K ++ + +L++ Y K L D+ +F + R + V W A I G
Sbjct: 583 IHAQVIKKELQSDVYICSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGK 642
Query: 199 FHQVFNDFKEMGRERIKKNSYTFSSVLKACG--GVDDDG 235
+ F+ M E IK N TF S+L+AC G+ D G
Sbjct: 643 GEEAIQLFERMILENIKPNHVTFISILRACAHMGLIDKG 681
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 57/127 (44%), Gaps = 12/127 (9%)
Query: 6 LPITTD--MYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLD 63
+ IT D Y ++ C SAG + ++ + ++ + + L+ M+ CG L
Sbjct: 555 MGITPDKFTYATVLDTCA-NLASAGLGKQIHAQVIKKELQSDVYICSTLVDMYSKCGDLH 613
Query: 64 TARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR--KKGHMLLVFPAWIIV 121
+R +F++ RDF +W MI GY +E I LF M+ K H+ +
Sbjct: 614 DSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHV-------TFI 666
Query: 122 CVLKACV 128
+L+AC
Sbjct: 667 SILRACA 673
>gi|297741134|emb|CBI31865.3| unnamed protein product [Vitis vinifera]
Length = 573
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 102/329 (31%), Positives = 154/329 (46%), Gaps = 21/329 (6%)
Query: 9 TTDMYT--CLIKECT-FQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTA 65
DMYT ++K CT F G E ++ + ++ L N LL + CG+ A
Sbjct: 102 VPDMYTFPVVLKACTKFLGVQEG--EQVHGVAVKMGFLCDLYVQNSLLHFYSVCGKWGGA 159
Query: 66 RQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLK 125
++FDEM +RD SW +I GYV + E I LF +M +V V VL
Sbjct: 160 GRVFDEMLVRDVVSWTGLISGYVRTGLFDEAINLFLKMD--------VVPNVATFVSVLV 211
Query: 126 ACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVV 185
AC + +GK VHGL++K + + +L++ Y K CL +A +F +L + V
Sbjct: 212 ACGRMGYLSMGKGVHGLVYKRAFGIGLVVGNALVDMYVKCECLCEARKLFDELPDRDIVS 271
Query: 186 WTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC---GGVDDDGNCGRQMH 242
WT+ I + F +M ++ + +SVL AC G +D GR +
Sbjct: 272 WTSIISGLVQCKQPKDSLELFYDMQISGVEPDRIILTSVLSACASLGALD----YGRWVQ 327
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
I + G+E D ++ LVDMY KC + A +F I + +NI +WNA+L G +G
Sbjct: 328 EYIERQGIEWDIHIGTALVDMYAKCGCIEMALHIFNGIPN-RNIFTWNALLGGLAMHGHG 386
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIAC 331
EA K LM +GI+ E + AC
Sbjct: 387 HEALKHFELMIGAGIRPNEVTFLAILTAC 415
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 110/214 (51%), Gaps = 5/214 (2%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
VLKAC + ++ G+QVHG+ K+G ++ + SL++FY A VF ++ +
Sbjct: 111 VLKACTKFLGVQEGEQVHGVAVKMGFLCDLYVQNSLLHFYSVCGKWGGAGRVFDEMLVRD 170
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
V WT I R G F + N F +M + N TF SVL ACG + + G+ +H
Sbjct: 171 VVSWTGLISGYVRTGLFDEAINLFLKM---DVVPNVATFVSVLVACGRMGYL-SMGKGVH 226
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
+ K V LVDMY KC L +A ++F+ + D ++I SW +++ G ++
Sbjct: 227 GLVYKRAFGIGLVVGNALVDMYVKCECLCEARKLFDELPD-RDIVSWTSIISGLVQCKQP 285
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
++ + Y M+ SG++ ++ + AC+S+ A
Sbjct: 286 KDSLELFYDMQISGVEPDRIILTSVLSACASLGA 319
>gi|359476188|ref|XP_002283446.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g25970-like [Vitis vinifera]
Length = 829
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 84/288 (29%), Positives = 139/288 (48%), Gaps = 12/288 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N ++ + CG++ A ++F E RD SW MI G+V++ +++ + F + MKR
Sbjct: 38 NNIISGYAKCGEIRIASKMFGETSQRDAVSWNTMIAGFVNLGNFETALE-FLKSMKRYG- 95
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ +LK C +E+G+QVH ++ K+G N+ +L++ Y K +E
Sbjct: 96 ---FAVDGYSFGSILKGVACVGYVEVGQQVHSMMVKMGYEGNVFAGSALLDMYAKCERVE 152
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
DA VF + N+V W A I + G F M E ++ + TF+ +L
Sbjct: 153 DAFEVFKSINIRNSVTWNALISGYAQVGDRGTAFWLLDCMELEGVEIDDGTFAPLLTLLD 212
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
D Q+HA IVK GL SD V ++ Y +C + DAERVF+ ++ +++ +W
Sbjct: 213 DPDLH-KLTTQVHAKIVKHGLASDTTVCNAIITAYSECGSIEDAERVFDGAIETRDLVTW 271
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISAS 337
N+ML Y+ N EA + M+ G + D+ S ISA+
Sbjct: 272 NSMLAAYLVNNQEEEAFQLFLEMQVLGFE------PDIYTYTSVISAA 313
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 76/290 (26%), Positives = 137/290 (47%), Gaps = 14/290 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFD-EMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
N ++ + CG ++ A ++FD + RD +W M+ Y+ +E LF EM
Sbjct: 240 NAIITAYSECGSIEDAERVFDGAIETRDLVTWNSMLAAYLVNNQEEEAFQLFLEMQ---- 295
Query: 109 GHMLLVFPA--WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF- 165
+L F + V+ A + GK +HGL+ K G + ++ SLI Y K
Sbjct: 296 ---VLGFEPDIYTYTSVISAAFEGSHQGQGKSLHGLVIKRGLEFLVPISNSLIAMYLKSH 352
Query: 166 -RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
+ +++A +F L+ + V W + + + G F+ M + + + Y FS+V
Sbjct: 353 SKSMDEALNIFESLENKDHVSWNSILTGFSQSGLSEDALKFFENMRSQYVVIDHYAFSAV 412
Query: 225 LKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
L++C + G+Q+H ++K G E + +V L+ MY KC ++ DA + F+
Sbjct: 413 LRSCSDLATL-QLGQQVHVLVLKSGFEPNGFVASSLIFMYSKCGVIEDARKSFDATPKDS 471
Query: 285 NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
+IA WN+++ GY ++G A +LMK +++ + ACS I
Sbjct: 472 SIA-WNSLIFGYAQHGRGKIALDLFFLMKDRRVKLDHITFVAVLTACSHI 520
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 92/184 (50%), Gaps = 6/184 (3%)
Query: 140 HGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHF 199
H L K G++ +I ++I+ Y K + A +F + + + V W I G+F
Sbjct: 22 HCLAIKSGTTASIYTANNIISGYAKCGEIRIASKMFGETSQRDAVSWNTMIAGFVNLGNF 81
Query: 200 HQVFNDFKEMGRERIKKNSYTFSSVLK--ACGGVDDDGNCGRQMHANIVKIGLESDEYVQ 257
K M R + Y+F S+LK AC G + G+Q+H+ +VK+G E + +
Sbjct: 82 ETALEFLKSMKRYGFAVDGYSFGSILKGVACVGYVE---VGQQVHSMMVKMGYEGNVFAG 138
Query: 258 CGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGI 317
L+DMY KC + DA VF+ I + +N +WNA++ GY + G A L M+ G+
Sbjct: 139 SALLDMYAKCERVEDAFEVFKSI-NIRNSVTWNALISGYAQVGDRGTAFWLLDCMELEGV 197
Query: 318 QIQE 321
+I +
Sbjct: 198 EIDD 201
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 76/295 (25%), Positives = 141/295 (47%), Gaps = 26/295 (8%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLF----AEMMKRK 107
LL M+ C +++ A ++F + +R+ +W +I GY V D L E ++
Sbjct: 141 LLDMYAKCERVEDAFEVFKSINIRNSVTWNALISGYAQVGDRGTAFWLLDCMELEGVEID 200
Query: 108 KGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
G +L +L QVH + K G + + ++ ++I Y +
Sbjct: 201 DG---------TFAPLLTLLDDPDLHKLTTQVHAKIVKHGLASDTTVCNAIITAYSECGS 251
Query: 168 LEDADFVF-SQLKRHNTVVW----TAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFS 222
+EDA+ VF ++ + V W A +VNN E F Q+F + + +G E + YT++
Sbjct: 252 IEDAERVFDGAIETRDLVTWNSMLAAYLVNNQEEEAF-QLFLEMQVLGFE---PDIYTYT 307
Query: 223 SVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKC--RLLRDAERVFELI 280
SV+ A G G+ +H ++K GLE + L+ MY K + + +A +FE +
Sbjct: 308 SVISAAFEGSHQGQ-GKSLHGLVIKRGLEFLVPISNSLIAMYLKSHSKSMDEALNIFESL 366
Query: 281 VDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
+K ++ SWN++L G+ ++GL +A KF M++ + I + + +CS ++
Sbjct: 367 ENKDHV-SWNSILTGFSQSGLSEDALKFFENMRSQYVVIDHYAFSAVLRSCSDLA 420
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 131/295 (44%), Gaps = 16/295 (5%)
Query: 6 LPITTDMYT-CLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSC--GQL 62
L D+YT + F+ G + L+ + + ++ + N L+ M++ +
Sbjct: 297 LGFEPDIYTYTSVISAAFEGSHQGQGKSLHGLVIKRGLEFLVPISNSLIAMYLKSHSKSM 356
Query: 63 DTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVC 122
D A +F+ + +D SW ++ G+ ++ + F M + +V +
Sbjct: 357 DEALNIFESLENKDHVSWNSILTGFSQSGLSEDALKFFENMRSQ-----YVVIDHYAFSA 411
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
VL++C ++LG+QVH L+ K G N + SLI Y K +EDA F + +
Sbjct: 412 VLRSCSDLATLQLGQQVHVLVLKSGFEPNGFVASSLIFMYSKCGVIEDARKSFDATPKDS 471
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC---GGVDDDGNCGR 239
++ W + I + G + F M R+K + TF +VL AC G V++ + +
Sbjct: 472 SIAWNSLIFGYAQHGRGKIALDLFFLMKDRRVKLDHITFVAVLTACSHIGLVEEGWSFLK 531
Query: 240 QMHANIVKIGLESD-EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
M ++ G+ E+ C ++D+ G+ L +A+ + E + + + W +L
Sbjct: 532 SMESD---YGIPPRMEHYAC-MIDLLGRAGRLDEAKALIEAMPFEPDAMVWKTLL 582
>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
Length = 746
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 80/277 (28%), Positives = 134/277 (48%), Gaps = 7/277 (2%)
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI 119
G++ AR+LFD+ P D W ++ Y + I ++A M FP
Sbjct: 121 GEVSCARKLFDKFPDPDVFLWNAIVRCYSRHGFFGHAIEMYARMQVACVSPDGFSFP--- 177
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
CVLKAC +E+G++VHG +F+ G ++ + L+ Y K + A+ VF +L
Sbjct: 178 --CVLKACSALPALEMGRRVHGQIFRHGFESDVFVQNGLVALYAKCGEIVRANAVFGRLV 235
Query: 180 RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGR 239
V WT+ I + G + F EM + ++ + SVL+A V+D + G+
Sbjct: 236 DRTIVSWTSIISGYAQNGQPIEALRIFSEMRKTNVRPDWIALVSVLRAYTDVEDLEH-GK 294
Query: 240 QMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRN 299
+H ++K+GLE + + L +Y KC + A R+F V+ ++ WNAM+ GY++N
Sbjct: 295 SIHGCVIKMGLECEFDLLISLTSLYAKCGHVMVA-RLFFNQVENPSLIFWNAMISGYVKN 353
Query: 300 GLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
G EA + LMK+ I+ + AC+ I +
Sbjct: 354 GYAEEAIELFRLMKSKNIRPDSITVTSSIAACAQIGS 390
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 86/323 (26%), Positives = 147/323 (45%), Gaps = 16/323 (4%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRV---NIKPTLLFLNRLLLMHVSCGQLDTARQLF 69
+ C++K C+ + A E+ + ++ + + N L+ ++ CG++ A +F
Sbjct: 176 FPCVLKACS----ALPALEMGRRVHGQIFRHGFESDVFVQNGLVALYAKCGEIVRANAVF 231
Query: 70 DEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI-IVCVLKACV 128
+ R SW +I GY E + +F+EM K V P WI +V VL+A
Sbjct: 232 GRLVDRTIVSWTSIISGYAQNGQPIEALRIFSEMRKTN------VRPDWIALVSVLRAYT 285
Query: 129 CTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTA 188
++E GK +HG + K+G L SL + Y K + A F+Q++ + + W A
Sbjct: 286 DVEDLEHGKSIHGCVIKMGLECEFDLLISLTSLYAKCGHVMVARLFFNQVENPSLIFWNA 345
Query: 189 KIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKI 248
I + G+ + F+ M + I+ +S T +S + AC + R M I
Sbjct: 346 MISGYVKNGYAEEAIELFRLMKSKNIRPDSITVTSSIAACAQI-GSLELARWMDEYISMS 404
Query: 249 GLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKF 308
+D V L+D Y KC + A VF+ I D K++ W+AM+VGY +G E+
Sbjct: 405 EFRNDVIVNTSLIDTYAKCGSVDMARFVFDRIPD-KDVVVWSAMMVGYGLHGQGRESIIL 463
Query: 309 LYLMKASGIQIQESLINDLRIAC 331
+ M+ +G+ + L AC
Sbjct: 464 FHAMRQAGVSPNDVTFVGLLTAC 486
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 84/181 (46%), Gaps = 2/181 (1%)
Query: 138 QVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREG 197
Q++ L G L L+N + A +F + + +W A + R G
Sbjct: 93 QIYAKLLVTGLQYGGFLIAKLVNKASNIGEVSCARKLFDKFPDPDVFLWNAIVRCYSRHG 152
Query: 198 HFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQ 257
F + M + + ++F VLKAC + GR++H I + G ESD +VQ
Sbjct: 153 FFGHAIEMYARMQVACVSPDGFSFPCVLKACSAL-PALEMGRRVHGQIFRHGFESDVFVQ 211
Query: 258 CGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGI 317
GLV +Y KC + A VF +VD + I SW +++ GY +NG +EA + M+ + +
Sbjct: 212 NGLVALYAKCGEIVRANAVFGRLVD-RTIVSWTSIISGYAQNGQPIEALRIFSEMRKTNV 270
Query: 318 Q 318
+
Sbjct: 271 R 271
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 62/249 (24%), Positives = 109/249 (43%), Gaps = 20/249 (8%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L ++ CG + AR F+++ W MI GYV +E I LF +MK K
Sbjct: 315 LTSLYAKCGHVMVARLFFNQVENPSLIFWNAMISGYVKNGYAEEAIELF-RLMKSKN--- 370
Query: 112 LLVFPAWIIVCV-LKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
+ P I V + AC ++EL + + + ++ + SLI+ Y K ++
Sbjct: 371 --IRPDSITVTSSIAACAQIGSLELARWMDEYISMSEFRNDVIVNTSLIDTYAKCGSVDM 428
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC-- 228
A FVF ++ + VVW+A +V G + F M + + N TF +L AC
Sbjct: 429 ARFVFDRIPDKDVVVWSAMMVGYGLHGQGRESIILFHAMRQAGVSPNDVTFVGLLTACKN 488
Query: 229 -GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD---KK 284
G V++ G + + G+E +VD+ G+ L +R + +++ +
Sbjct: 489 SGLVEE----GWDLFHRMRDYGIEPRHQHYACVVDLLGRAGHL---DRAYNFVMNMPIEP 541
Query: 285 NIASWNAML 293
++ W A+L
Sbjct: 542 GVSVWGALL 550
>gi|449456661|ref|XP_004146067.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
chloroplastic-like [Cucumis sativus]
Length = 793
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 90/311 (28%), Positives = 151/311 (48%), Gaps = 19/311 (6%)
Query: 30 FELLNHIRKRV--NIKPTLL-FLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVG 86
FEL + V N+ T + +N L+ M+ C +DT+ ++FD MP +D SW MI
Sbjct: 306 FELAEQLHAFVIKNVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSWNTMISA 365
Query: 87 YVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKL 146
+V E + LF EM K+ L+ + + +L A N ++GKQ HG L +
Sbjct: 366 FVQNGLNDEALMLFYEMKKQD-----LMVDSVTVTALLSAASDLRNPDIGKQTHGYLLRN 420
Query: 147 GSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH--NTVVWTAKIVNNCREGHFHQVFN 204
G + LI+ Y K +E A VF + H + W + + + G Q F
Sbjct: 421 GIQFE-GMDSYLIDMYAKSGLIEAAQNVFEKSFSHERDQATWNSMMSGYTQNGLVDQAFL 479
Query: 205 DFKEMGRERIKKNSYTFSSVLKAC---GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLV 261
++M +++ N T +S+L AC G +D G+Q+H ++ L+ + +V L+
Sbjct: 480 ILRQMLDQKVMPNVVTLASILPACNPSGYID----WGKQLHGFSIRNDLDQNVFVATALI 535
Query: 262 DMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQE 321
DMY K + AE VF ++K+I +++ M++GY ++G+ A + M+ SGIQ
Sbjct: 536 DMYSKSGSIAHAENVFSK-ANEKSIVTYSTMILGYGQHGMGESALFMFHRMQKSGIQPDA 594
Query: 322 SLINDLRIACS 332
+ + ACS
Sbjct: 595 VTLVAVLSACS 605
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 89/346 (25%), Positives = 145/346 (41%), Gaps = 30/346 (8%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQL---------- 62
Y+ ++K C ++ + H R + P+ + N LL M+ C
Sbjct: 75 YSSVLKACADTRNLVVGKAVHAHFL-RCLMNPSRIVYNSLLNMYSMCSSTTPDGKMVSGY 133
Query: 63 ---DTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI 119
D R++FD M R +W +I YV Y E + F+ MMK + + P+ +
Sbjct: 134 SRCDLVRKVFDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMK------IGIKPSPV 187
Query: 120 -IVCVLKACVCTMNMELGKQVHGLLFKLGSS--RNISLTGSLINFYGKFRCLEDADFVFS 176
V V A + + VHG+L KLGS ++ + S I Y + CLE A VF
Sbjct: 188 SFVNVFPAFSSLGDFKNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEFAKKVFD 247
Query: 177 QLKRHNTVVWTAKI---VNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDD 233
NT VW I V N Q+F F+ + E + T S + A +
Sbjct: 248 NCLERNTEVWNTMISAFVQNNFSLEGIQLF--FQAVESEDAAIDEVTLLSAISAASHLQK 305
Query: 234 DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
Q+HA ++K + V L+ MY +C + + ++F+ + +K++ SWN M+
Sbjct: 306 -FELAEQLHAFVIKNVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNM-PEKDVVSWNTMI 363
Query: 294 VGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKI 339
+++NGL EA Y MK + + + L A S + I
Sbjct: 364 SAFVQNGLNDEALMLFYEMKKQDLMVDSVTVTALLSAASDLRNPDI 409
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 76/294 (25%), Positives = 133/294 (45%), Gaps = 27/294 (9%)
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI 119
GQL ARQLFD +P W +I+G V ++ + LF MK + ++
Sbjct: 18 GQLHLARQLFDALPRPSTVLWNTIIIGLV-CNNFPDEALLFYSNMKSSSPQVKC--DSYT 74
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFY--------------GKF 165
VLKAC T N+ +GK VH + + + + SL+N Y G
Sbjct: 75 YSSVLKACADTRNLVVGKAVHAHFLRCLMNPSRIVYNSLLNMYSMCSSTTPDGKMVSGYS 134
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
RC + VF +++ V W I R + + F M + IK + +F +V
Sbjct: 135 RC-DLVRKVFDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKIGIKPSPVSFVNVF 193
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLE--SDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
A + D N +H +VK+G E +D YV + MY + L A++VF+ ++
Sbjct: 194 PAFSSLGDFKN-ANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEFAKKVFDNCLE- 251
Query: 284 KNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISAS 337
+N WN M+ +++N +E + + ++ +++ I+++ + S+ISA+
Sbjct: 252 RNTEVWNTMISAFVQNNFSLEGIQLFF----QAVESEDAAIDEVTL-LSAISAA 300
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/253 (22%), Positives = 116/253 (45%), Gaps = 20/253 (7%)
Query: 52 LLLMHVSCGQLDTARQLFDEM--PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
L+ M+ G ++ A+ +F++ RD +W M+ GY + + +M+ +K
Sbjct: 431 LIDMYAKSGLIEAAQNVFEKSFSHERDQATWNSMMSGYTQNGLVDQAFLILRQMLDQK-- 488
Query: 110 HMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
V P + + +L AC + ++ GKQ+HG + +N+ + +LI+ Y K +
Sbjct: 489 ----VMPNVVTLASILPACNPSGYIDWGKQLHGFSIRNDLDQNVFVATALIDMYSKSGSI 544
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
A+ VFS+ + V ++ I+ + G F M + I+ ++ T +VL AC
Sbjct: 545 AHAENVFSKANEKSIVTYSTMILGYGQHGMGESALFMFHRMQKSGIQPDAVTLVAVLSAC 604
Query: 229 --GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIV---DK 283
G+ D+G + + I ++ + C + DM G+ + ++ +E ++ +K
Sbjct: 605 SYAGLVDEGLQIFESMRTVYNIQPSTEHF--CCVADMLGRAGRV---DKAYEFVIGLGEK 659
Query: 284 KNIAS-WNAMLVG 295
N+ W ++L
Sbjct: 660 GNVMEIWGSLLAA 672
>gi|224146493|ref|XP_002326026.1| predicted protein [Populus trichocarpa]
gi|222862901|gb|EEF00408.1| predicted protein [Populus trichocarpa]
Length = 737
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 76/262 (29%), Positives = 127/262 (48%), Gaps = 7/262 (2%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL + CG LD A +F++MP + +W MI ++C+ LF ++++++
Sbjct: 154 LLGLFGRCGWLDEAFHVFEDMPDKSLVTWNSMISLLGHHGFVEDCVVLFRKLVRKEGSLS 213
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
F VL VC ++E G Q+HGL+ K G + ++ SLIN Y + +
Sbjct: 214 KCSFEG-----VLSGLVCEEDLEFGGQIHGLVIKSGLDCEVLVSNSLINMYARRSSMSQV 268
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
+ +F ++ + V W I + + + F +M + I N TF SV+ +C +
Sbjct: 269 EKLFEEVDGRDVVTWNTIISAFSKSKNPGKALEVFLKMSEDGIMPNQTTFVSVINSCTSL 328
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
CG +H IVK LE+D Y+ LVD Y KC L +A F I +KN+ SWN+
Sbjct: 329 LVP-MCGEYVHGKIVKTALETDVYLGSALVDYYAKCGKLDNAHYCFREI-HQKNVVSWNS 386
Query: 292 MLVGYIRNGLYVEATKFLYLMK 313
+++GY + + L ++K
Sbjct: 387 LILGYANKCSFASVSLLLEMLK 408
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 79/283 (27%), Positives = 130/283 (45%), Gaps = 45/283 (15%)
Query: 56 HVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVF 115
+ CG+LD A F E+ ++ SW +I+GY + + ++L EM+K F
Sbjct: 360 YAKCGKLDNAHYCFREIHQKNVVSWNSLILGYANKCSFAS-VSLLLEMLKLGFRPNEFSF 418
Query: 116 PAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA-DFV 174
A VLK+ ++ +EL KQ+H L +LG N + SLI YG+ + DA FV
Sbjct: 419 SA-----VLKS---SLVLEL-KQIHSLTIRLGYENNEYVLTSLITSYGRNGLITDALIFV 469
Query: 175 -------------------------------FSQLKRHNTVVWTAKIVNNCREGHFHQVF 203
SQL+ +TV W I R G++++VF
Sbjct: 470 KASETLLAVVPANSIAGIYNRSGQYFETLKFLSQLEEPDTVSWNIVIAACARNGNYNEVF 529
Query: 204 NDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLES-DEYVQCGLVD 262
FK M ++ ++YT++S+L V + G +H ++K D V+ L+D
Sbjct: 530 ELFKHMRVAQMLPDNYTYTSLLCVSSKVCNLA-LGSSIHGLLIKTNFSYFDIVVRNVLID 588
Query: 263 MYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEA 305
MYGKC L + ++F+ + + +N+ +W A++ NG EA
Sbjct: 589 MYGKCGNLESSAKIFDSMTE-RNLITWTALISALGINGCAQEA 630
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/265 (24%), Positives = 127/265 (47%), Gaps = 13/265 (4%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
+L N L+ M+ + +LF+E+ RD +W +I + + + + +F +M +
Sbjct: 249 VLVSNSLINMYARRSSMSQVEKLFEEVDGRDVVTWNTIISAFSKSKNPGKALEVFLKMSE 308
Query: 106 RKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
+ P V V+ +C + G+ VHG + K ++ L +L+++Y K
Sbjct: 309 DG------IMPNQTTFVSVINSCTSLLVPMCGEYVHGKIVKTALETDVYLGSALVDYYAK 362
Query: 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
L++A + F ++ + N V W + I+ + F V + EM + + N ++FS+V
Sbjct: 363 CGKLDNAHYCFREIHQKNVVSWNSLILGYANKCSFASV-SLLLEMLKLGFRPNEFSFSAV 421
Query: 225 LKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
LK+ ++ +Q+H+ +++G E++EYV L+ YG+ L+ DA +
Sbjct: 422 LKSSLVLEL-----KQIHSLTIRLGYENNEYVLTSLITSYGRNGLITDALIFVKASETLL 476
Query: 285 NIASWNAMLVGYIRNGLYVEATKFL 309
+ N++ Y R+G Y E KFL
Sbjct: 477 AVVPANSIAGIYNRSGQYFETLKFL 501
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/295 (21%), Positives = 131/295 (44%), Gaps = 10/295 (3%)
Query: 41 NIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLF 100
N + + N ++ + S Q+ A ++FD MP R+ S+ +I + +E F
Sbjct: 43 NPEQSTFVYNNIISFYASFNQVPMAHKVFDNMPHRNKVSYNSIISCFSKYGYLEEAWRTF 102
Query: 101 AEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLG-SSRNISLTGSLI 159
EM+ P + L +C +M++ G + L K G ++ + +L+
Sbjct: 103 CEMIDCG------FRPNNFTLSGLLSCA-SMDVGRGIMLQALAIKNGLFCSDVFVGTALL 155
Query: 160 NFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSY 219
+G+ L++A VF + + V W + I G F+++ R+ +
Sbjct: 156 GLFGRCGWLDEAFHVFEDMPDKSLVTWNSMISLLGHHGFVEDCVVLFRKLVRKEGSLSKC 215
Query: 220 TFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFEL 279
+F VL ++D G Q+H ++K GL+ + V L++MY + + E++FE
Sbjct: 216 SFEGVLSGL-VCEEDLEFGGQIHGLVIKSGLDCEVLVSNSLINMYARRSSMSQVEKLFEE 274
Query: 280 IVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
VD +++ +WN ++ + ++ +A + M GI ++ + +C+S+
Sbjct: 275 -VDGRDVVTWNTIISAFSKSKNPGKALEVFLKMSEDGIMPNQTTFVSVINSCTSL 328
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 107/244 (43%), Gaps = 21/244 (8%)
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI 119
GQ + ++ D SW ++I +Y E LF M + ML +
Sbjct: 492 GQYFETLKFLSQLEEPDTVSWNIVIAACARNGNYNEVFELFKHM---RVAQMLPDNYTYT 548
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSR-NISLTGSLINFYGKFRCLEDADFVFSQL 178
+ + + VC N+ LG +HGLL K S +I + LI+ YGK LE + +F +
Sbjct: 549 SLLCVSSKVC--NLALGSSIHGLLIKTNFSYFDIVVRNVLIDMYGKCGNLESSAKIFDSM 606
Query: 179 KRHNTVVWTAKI----VNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--GGVD 232
N + WTA I +N C + + FND + +G + + F +VL AC G +
Sbjct: 607 TERNLITWTALISALGINGCAQEALER-FNDMEFLGS---RPDKVAFIAVLTACRHGALV 662
Query: 233 DDGNCGRQMHANIVKIGLESD-EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
+ G Q+ + +E D ++ C LVD+ + L +AE+V + + W +
Sbjct: 663 RE---GMQLFGKMNNYHIEPDMDHYHC-LVDLLARNGHLEEAEKVISCMPFPPDAQIWRS 718
Query: 292 MLVG 295
L G
Sbjct: 719 FLEG 722
>gi|449497733|ref|XP_004160501.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g13650-like [Cucumis sativus]
Length = 1037
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 88/329 (26%), Positives = 150/329 (45%), Gaps = 14/329 (4%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRV---NIKPTLLFLNRLLLMHVSCGQLDTARQLF 69
Y +++ CT S GA L I V + + + L+ M+ GQL A ++
Sbjct: 466 YPSILRTCT----SLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRIL 521
Query: 70 DEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVC 129
+P D SW MI GYV + E + LF EM R + F + AC
Sbjct: 522 RRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRG-----IQFDNIGFASAISACAG 576
Query: 130 TMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAK 189
+ G+Q+H + G ++S+ +LI+ Y + +++A F ++ N + W +
Sbjct: 577 IRALRQGQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSL 636
Query: 190 IVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIG 249
+ + G+F + F M R + N +T+ S + A + + G+Q+H+ ++K G
Sbjct: 637 VSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQ-GQQIHSMVLKTG 695
Query: 250 LESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFL 309
+S+ V L+ +Y K + DA R F + ++N+ SWNAM+ GY ++G +EA +
Sbjct: 696 YDSEREVSNSLISLYAKSGSISDAWREFN-DMSERNVISWNAMITGYSQHGCGMEALRLF 754
Query: 310 YLMKASGIQIQESLINDLRIACSSISASK 338
MK GI + ACS I K
Sbjct: 755 EEMKVCGIMPNHVTFVGVLSACSHIGLVK 783
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 70/274 (25%), Positives = 127/274 (46%), Gaps = 7/274 (2%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
+ + ++ LL ++ C ++TA + F + W VM+V Y + + +
Sbjct: 390 KAGMSADIILEGSLLDLYSKCADVETAHKFFLXTETENIVLWNVMLVAYGQLDNLSDSFE 449
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
+F +M +P+ +L+ C + LG+Q+H + K G N+ + L
Sbjct: 450 IFRQMQMEGMIPNQFTYPS-----ILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVL 504
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
I+ Y K+ L A + +L + V WTA I + F + F+EM I+ ++
Sbjct: 505 IDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDN 564
Query: 219 YTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE 278
F+S + AC G+ G+Q+HA G +D + L+ +Y +C +++A FE
Sbjct: 565 IGFASAISACAGIRALRQ-GQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFE 623
Query: 279 LIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLM 312
I DK NI SWN+++ G ++G + EA + M
Sbjct: 624 KIGDKNNI-SWNSLVSGLAQSGYFEEALQVFVRM 656
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 80/312 (25%), Positives = 149/312 (47%), Gaps = 12/312 (3%)
Query: 29 AFELLNHIRKRV---NIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIV 85
AF + + R + L N L+ ++ G +++A+++F+ + ++D +W MI
Sbjct: 175 AFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMIS 234
Query: 86 GYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLF 144
G +E I LF +M H +FP +++ VL A ELG+Q+H L+
Sbjct: 235 GLSQNGLEEEAILLFCDM------HASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVI 288
Query: 145 KLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFN 204
K G + L+ Y + R L A+ +FS + + V + + I ++G +
Sbjct: 289 KWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALE 348
Query: 205 DFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMY 264
F +M R+ +K + T +S+L AC V + G Q+H++ +K G+ +D ++ L+D+Y
Sbjct: 349 LFTKMQRDCLKPDCITVASLLSACASVGAL-HKGMQLHSHAIKAGMSADIILEGSLLDLY 407
Query: 265 GKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLI 324
KC + A + F L + +NI WN MLV Y + ++ + M+ G+ +
Sbjct: 408 SKCADVETAHKFF-LXTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTY 466
Query: 325 NDLRIACSSISA 336
+ C+S+ A
Sbjct: 467 PSILRTCTSLGA 478
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/288 (28%), Positives = 135/288 (46%), Gaps = 9/288 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ ++ +L +A ++F M RD S+ +I G V + LF +M +
Sbjct: 300 NGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRD--- 356
Query: 110 HMLLVFPAWIIVC-VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+ P I V +L AC + G Q+H K G S +I L GSL++ Y K +
Sbjct: 357 ---CLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADV 413
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
E A F + N V+W +V + + F F++M E + N +T+ S+L+ C
Sbjct: 414 ETAHKFFLXTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTC 473
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
+ G Q+H +++K G + + YV L+DMY K L A R+ + + ++ S
Sbjct: 474 TSLGAL-YLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRL-PEDDVVS 531
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
W AM+ GY+++ ++ EA + M+ GIQ AC+ I A
Sbjct: 532 WTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRA 579
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 79/291 (27%), Positives = 126/291 (43%), Gaps = 8/291 (2%)
Query: 47 LFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR 106
L ++ L+ + G A ++FDE R SW MI +V + LF M+
Sbjct: 94 LLIDSLVDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAE 153
Query: 107 KKGHMLLVFPAWIIVCVLKACVC-TMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
+ + VLKACV + KQVH F G + + LI+ Y K
Sbjct: 154 G-----ITPNGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKN 208
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
+E A VF+ + + V W A I + G + F +M I Y SSVL
Sbjct: 209 GYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVL 268
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
A + G Q+H ++K G S+ YV GLV +Y + R L AER+F ++ ++
Sbjct: 269 SASTKI-QLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFS-TMNSRD 326
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
S+N+++ G ++ G A + M+ ++ + L AC+S+ A
Sbjct: 327 GVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGA 377
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 91/195 (46%), Gaps = 1/195 (0%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
+L+ C+ + ++ ++H + K G L SL++ Y + A VF + +
Sbjct: 64 LLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDNYFRHGDQHGAVKVFDENSNRS 123
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
W I + QVF F+ M E I N YTF+ VLKAC G D N +Q+H
Sbjct: 124 VFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVGGDIAFNYVKQVH 183
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
+ G +S V L+D+Y K + A++VF I K+I +W AM+ G +NGL
Sbjct: 184 SRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCIC-MKDIVTWVAMISGLSQNGLE 242
Query: 303 VEATKFLYLMKASGI 317
EA M AS I
Sbjct: 243 EEAILLFCDMHASEI 257
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 113/247 (45%), Gaps = 11/247 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ ++ CG++ A F+++ ++ SW ++ G ++E + +F M++ +
Sbjct: 603 NALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRTEAE 662
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ + + + A N++ G+Q+H ++ K G ++ SLI+ Y K +
Sbjct: 663 VNMFTYGS-----AISAAASLANIKQGQQIHSMVLKTGYDSEREVSNSLISLYAKSGSIS 717
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
DA F+ + N + W A I + G + F+EM I N TF VL AC
Sbjct: 718 DAWREFNDMSERNVISWNAMITGYSQHGCGMEALRLFEEMKVCGIMPNHVTFVGVLSACS 777
Query: 230 --GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKC-RLLRDAERVFELIVDKKNI 286
G+ +G + I + +S+ YV C +VD+ G+ +L R E + E+ + +
Sbjct: 778 HIGLVKEGLDYFESMFKIHDLVPKSEHYV-C-VVDLLGRAGQLDRAMEYIKEMPIPADAM 835
Query: 287 ASWNAML 293
W +L
Sbjct: 836 I-WRTLL 841
>gi|449448586|ref|XP_004142047.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Cucumis sativus]
Length = 1037
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 88/329 (26%), Positives = 150/329 (45%), Gaps = 14/329 (4%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRV---NIKPTLLFLNRLLLMHVSCGQLDTARQLF 69
Y +++ CT S GA L I V + + + L+ M+ GQL A ++
Sbjct: 466 YPSILRTCT----SLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRIL 521
Query: 70 DEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVC 129
+P D SW MI GYV + E + LF EM R + F + AC
Sbjct: 522 RRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRG-----IQFDNIGFASAISACAG 576
Query: 130 TMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAK 189
+ G+Q+H + G ++S+ +LI+ Y + +++A F ++ N + W +
Sbjct: 577 IRALRQGQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSL 636
Query: 190 IVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIG 249
+ + G+F + F M R + N +T+ S + A + + G+Q+H+ ++K G
Sbjct: 637 VSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQ-GQQIHSMVLKTG 695
Query: 250 LESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFL 309
+S+ V L+ +Y K + DA R F + ++N+ SWNAM+ GY ++G +EA +
Sbjct: 696 YDSEREVSNSLISLYAKSGSISDAWREFN-DMSERNVISWNAMITGYSQHGCGMEALRLF 754
Query: 310 YLMKASGIQIQESLINDLRIACSSISASK 338
MK GI + ACS I K
Sbjct: 755 EEMKVCGIMPNHVTFVGVLSACSHIGLVK 783
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/274 (25%), Positives = 127/274 (46%), Gaps = 7/274 (2%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
+ + ++ LL ++ C ++TA + F + W VM+V Y + + +
Sbjct: 390 KAGMSADIILEGSLLDLYSKCADVETAHKFFLTTETENIVLWNVMLVAYGQLDNLSDSFE 449
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
+F +M +P+ +L+ C + LG+Q+H + K G N+ + L
Sbjct: 450 IFRQMQMEGMIPNQFTYPS-----ILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVL 504
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
I+ Y K+ L A + +L + V WTA I + F + F+EM I+ ++
Sbjct: 505 IDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDN 564
Query: 219 YTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE 278
F+S + AC G+ G+Q+HA G +D + L+ +Y +C +++A FE
Sbjct: 565 IGFASAISACAGIRALRQ-GQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFE 623
Query: 279 LIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLM 312
I DK NI SWN+++ G ++G + EA + M
Sbjct: 624 KIGDKNNI-SWNSLVSGLAQSGYFEEALQVFVRM 656
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 80/312 (25%), Positives = 149/312 (47%), Gaps = 12/312 (3%)
Query: 29 AFELLNHIRKRV---NIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIV 85
AF + + R + L N L+ ++ G +++A+++F+ + ++D +W MI
Sbjct: 175 AFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMIS 234
Query: 86 GYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLF 144
G +E I LF +M H +FP +++ VL A ELG+Q+H L+
Sbjct: 235 GLSQNGLEEEAILLFCDM------HASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVI 288
Query: 145 KLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFN 204
K G + L+ Y + R L A+ +FS + + V + + I ++G +
Sbjct: 289 KWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALE 348
Query: 205 DFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMY 264
F +M R+ +K + T +S+L AC V + G Q+H++ +K G+ +D ++ L+D+Y
Sbjct: 349 LFTKMQRDCLKPDCITVASLLSACASVGAL-HKGMQLHSHAIKAGMSADIILEGSLLDLY 407
Query: 265 GKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLI 324
KC + A + F L + +NI WN MLV Y + ++ + M+ G+ +
Sbjct: 408 SKCADVETAHKFF-LTTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTY 466
Query: 325 NDLRIACSSISA 336
+ C+S+ A
Sbjct: 467 PSILRTCTSLGA 478
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/288 (28%), Positives = 135/288 (46%), Gaps = 9/288 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ ++ +L +A ++F M RD S+ +I G V + LF +M +
Sbjct: 300 NGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRD--- 356
Query: 110 HMLLVFPAWIIVC-VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+ P I V +L AC + G Q+H K G S +I L GSL++ Y K +
Sbjct: 357 ---CLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADV 413
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
E A F + N V+W +V + + F F++M E + N +T+ S+L+ C
Sbjct: 414 ETAHKFFLTTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTC 473
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
+ G Q+H +++K G + + YV L+DMY K L A R+ + + ++ S
Sbjct: 474 TSLGAL-YLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRL-PEDDVVS 531
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
W AM+ GY+++ ++ EA + M+ GIQ AC+ I A
Sbjct: 532 WTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRA 579
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 79/291 (27%), Positives = 126/291 (43%), Gaps = 8/291 (2%)
Query: 47 LFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR 106
L ++ L+ + G A ++FDE R SW MI +V + LF M+
Sbjct: 94 LLIDSLVDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAE 153
Query: 107 KKGHMLLVFPAWIIVCVLKACVC-TMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
+ + VLKACV + KQVH F G + + LI+ Y K
Sbjct: 154 G-----ITPNGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKN 208
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
+E A VF+ + + V W A I + G + F +M I Y SSVL
Sbjct: 209 GYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVL 268
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
A + G Q+H ++K G S+ YV GLV +Y + R L AER+F ++ ++
Sbjct: 269 SASTKI-QLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFS-TMNSRD 326
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
S+N+++ G ++ G A + M+ ++ + L AC+S+ A
Sbjct: 327 GVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGA 377
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 91/195 (46%), Gaps = 1/195 (0%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
+L+ C+ + ++ ++H + K G L SL++ Y + A VF + +
Sbjct: 64 LLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDNYFRHGDQHGAVKVFDENSNRS 123
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
W I + QVF F+ M E I N YTF+ VLKAC G D N +Q+H
Sbjct: 124 VFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVGGDIAFNYVKQVH 183
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
+ G +S V L+D+Y K + A++VF I K+I +W AM+ G +NGL
Sbjct: 184 SRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCIC-MKDIVTWVAMISGLSQNGLE 242
Query: 303 VEATKFLYLMKASGI 317
EA M AS I
Sbjct: 243 EEAILLFCDMHASEI 257
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 113/247 (45%), Gaps = 11/247 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ ++ CG++ A F+++ ++ SW ++ G ++E + +F M++ +
Sbjct: 603 NALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRTEAE 662
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ + + + A N++ G+Q+H ++ K G ++ SLI+ Y K +
Sbjct: 663 VNMFTYGS-----AISAAASLANIKQGQQIHSMVLKTGYDSEREVSNSLISLYAKSGSIS 717
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
DA F+ + N + W A I + G + F+EM I N TF VL AC
Sbjct: 718 DAWREFNDMSERNVISWNAMITGYSQHGCGMEALRLFEEMKVCGIMPNHVTFVGVLSACS 777
Query: 230 --GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKC-RLLRDAERVFELIVDKKNI 286
G+ +G + I + +S+ YV C +VD+ G+ +L R E + E+ + +
Sbjct: 778 HIGLVKEGLDYFESMFKIHDLVPKSEHYV-C-VVDLLGRAGQLDRAMEYIKEMPIPADAM 835
Query: 287 ASWNAML 293
W +L
Sbjct: 836 I-WRTLL 841
>gi|302773325|ref|XP_002970080.1| hypothetical protein SELMODRAFT_171135 [Selaginella moellendorffii]
gi|300162591|gb|EFJ29204.1| hypothetical protein SELMODRAFT_171135 [Selaginella moellendorffii]
Length = 829
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 86/286 (30%), Positives = 131/286 (45%), Gaps = 8/286 (2%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
+L M+ CG + AR+ FD M +R+ SW+ MI Y + + LF M H
Sbjct: 83 VLTMYNRCGSVSHARRAFDAMVVRNVVSWSAMIAAYAQRGHPGDALELFVRM-----DHE 137
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGS-SRNISLTGSLINFYGKFRCLED 170
+ A V VL AC + LGK +H + G ++ L +++N YGK ++
Sbjct: 138 GVKANAITFVSVLDACASMRAIALGKSIHERIVADGLLGDDVILGNTIVNMYGKCGEVDL 197
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
A VF +++ N V W I R + + F EM + ++ N T SV+ AC
Sbjct: 198 AREVFERMEAKNAVTWNTMIAACSRHDRYKEAFALLGEMDLDGLRPNKITLVSVIDACAW 257
Query: 231 VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWN 290
+ GR +H + GLESD V LV++YGKC LR A E I + I SW
Sbjct: 258 MQSIVR-GRIVHEIVAGEGLESDNTVANALVNLYGKCGKLRAARHALEGIETRDKI-SWT 315
Query: 291 AMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+L Y R+G A + M G+++ +L +C +I+A
Sbjct: 316 TLLAAYARHGHGKRAIAVIKRMDHEGVKLDSFTFVNLLESCVAIAA 361
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 78/288 (27%), Positives = 136/288 (47%), Gaps = 8/288 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N ++ M+ CG++D AR++F+ M ++ +W MI Y+E L EM
Sbjct: 183 NTIVNMYGKCGEVDLAREVFERMEAKNAVTWNTMIAACSRHDRYKEAFALLGEM------ 236
Query: 110 HMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+ + P I +V V+ AC ++ G+ VH ++ G + ++ +L+N YGK L
Sbjct: 237 DLDGLRPNKITLVSVIDACAWMQSIVRGRIVHEIVAGEGLESDNTVANALVNLYGKCGKL 296
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
A ++ + + WT + R GH + K M E +K +S+TF ++L++C
Sbjct: 297 RAARHALEGIETRDKISWTTLLAAYARHGHGKRAIAVIKRMDHEGVKLDSFTFVNLLESC 356
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
+ G ++H + + G+E D +Q LVDMYGKC A R F+ + D +++
Sbjct: 357 VAIAALA-LGEEIHDRLAESGIELDPVLQTALVDMYGKCGNPDAARRAFDRMSDVRDVTV 415
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
WNA+L Y+ E M G+ + AC+S++A
Sbjct: 416 WNALLAAYVLRDQGKETLGIFARMSLQGVAPDAVTFLSILDACASLAA 463
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/264 (25%), Positives = 113/264 (42%), Gaps = 11/264 (4%)
Query: 72 MPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI-IVCVLKACVCT 130
M R SW + I Y + + +F M + V P + + +L A
Sbjct: 1 MADRSPFSWNLAIAEYARNGHHARALEIFRAMA------LEGVAPDRVSCIAILDAFASL 54
Query: 131 MNMELGKQVHGLLFKL-GSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAK 189
++ G+ H + + G ++ + +++ Y + + A F + N V W+A
Sbjct: 55 GDLSQGEFFHRTVCEASGLGSDVVVATAVLTMYNRCGSVSHARRAFDAMVVRNVVSWSAM 114
Query: 190 IVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIG 249
I + GH F M E +K N+ TF SVL AC + G+ +H IV G
Sbjct: 115 IAAYAQRGHPGDALELFVRMDHEGVKANAITFVSVLDACASMRAIA-LGKSIHERIVADG 173
Query: 250 LESDEYVQCG-LVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKF 308
L D+ + +V+MYGKC + A VFE + + KN +WN M+ R+ Y EA
Sbjct: 174 LLGDDVILGNTIVNMYGKCGEVDLAREVFERM-EAKNAVTWNTMIAACSRHDRYKEAFAL 232
Query: 309 LYLMKASGIQIQESLINDLRIACS 332
L M G++ + + + AC+
Sbjct: 233 LGEMDLDGLRPNKITLVSVIDACA 256
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 74/313 (23%), Positives = 130/313 (41%), Gaps = 36/313 (11%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKR-----VNIKPTLLFLNRLLLM 55
MD+ + + + + L++ C + A L I R + + P L L+ M
Sbjct: 337 MDHEGVKLDSFTFVNLLESCV----AIAALALGEEIHDRLAESGIELDPVLQ--TALVDM 390
Query: 56 HVSCGQLDTARQLFDEMP-LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
+ CG D AR+ FD M +RD W ++ YV +E + +FA M + +
Sbjct: 391 YGKCGNPDAARRAFDRMSDVRDVTVWNALLAAYVLRDQGKETLGIFARMSLQGVAPDAVT 450
Query: 115 FPAWIIVCVLKACVCTMNMELGKQVHGLLFKLG-------SSRNISLTGSLINFYGKFRC 167
F + +L AC + LG+ H + + G +S ++ LT S+IN Y K
Sbjct: 451 F-----LSILDACASLAALGLGRLTHSRMLERGLFDRQAVASADL-LTTSVINMYAKCGS 504
Query: 168 LEDADFVFSQLKR---HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
L DA F++ +R + V W+A + + G + F M +E +K +S +F S
Sbjct: 505 LADAKAEFAKARRARASDVVAWSAMVAAYSQFGLSEEALRCFYSMQQEGVKPDSVSFVSA 564
Query: 225 LKACGGVDDDGNCGRQMHANIVKI----GLESDEYVQCGLVDMYGKCRLLRDAERVFELI 280
+ C R+ A + G+ E LVD+ + +R+AE +
Sbjct: 565 IAGC----SHSGLVREAVAFFTSLRHDHGIAPTEAHFACLVDLLSRAGWIREAEALMRRA 620
Query: 281 VDKKNIASWNAML 293
+ ++W +L
Sbjct: 621 PLGAHHSTWMTLL 633
>gi|225457044|ref|XP_002279639.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300
[Vitis vinifera]
Length = 807
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 87/290 (30%), Positives = 149/290 (51%), Gaps = 19/290 (6%)
Query: 48 FLNRLLLMHVSCGQLDTARQLFDEMPLRDF---NS--WAVMIVGYVDVADYQECITLFAE 102
++ L+ M++ CG + A +F+ + +D N+ W VMI GYV + + + LF +
Sbjct: 248 LVSSLIEMYMKCGSIKNAENIFNSILDKDSVRRNAVIWNVMISGYVSNGCFSQALLLFIK 307
Query: 103 MMKRKKGHMLLVFPAW-IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINF 161
MM + + P + +V + C ++++ GKQ+HGL+FK G NI + +L++
Sbjct: 308 MM------VWGIKPDYSTMVSLFSLCSESLDIAFGKQIHGLIFKFGLKNNIRVETALLDM 361
Query: 162 YGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTF 221
Y K + +F + + HN ++W+A I N + G + F E E +S
Sbjct: 362 YLKCGDMGTGLKIFRRSQNHNLIMWSAVISNCAQSGCPTKALELFYEFKMEDGLADSGIL 421
Query: 222 SSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIV 281
+VL+AC + G Q+H K+G SD +V LVD+Y KCR + +++VF L +
Sbjct: 422 VAVLRACSSLTLKPE-GMQIHGLATKMGFVSDVFVGSALVDLYAKCRDMGYSKKVF-LRL 479
Query: 282 DKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
+K++ SWNA++ GY ++ EA K M Q++E N + IAC
Sbjct: 480 SQKDLVSWNALISGYAQDECADEALKAFRDM-----QLEEIRPNTVTIAC 524
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 90/330 (27%), Positives = 152/330 (46%), Gaps = 16/330 (4%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
+ CLIK D ++ H+ K + + + +N LL M+ CG ++ A Q+F++M
Sbjct: 112 FPCLIKAFGGLCDVYKGRQIHGHVLK-LGVLDDVSVVNSLLTMYWKCGVVEDAVQMFEKM 170
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWII-VCVLKACVCTM 131
P D SW MI G+ DY + F M+ ++P + V + +C
Sbjct: 171 PEVDLVSWNTMISGFQKSMDYTRSLMFFRSMVWE-----FGIYPNRVACVSSILSCSSLQ 225
Query: 132 NMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL-----KRHNTVVW 186
++ G+++HG++ K G L SLI Y K +++A+ +F+ + R N V+W
Sbjct: 226 SLTHGREIHGVVVKSGLDVEEYLVSSLIEMYMKCGSIKNAENIFNSILDKDSVRRNAVIW 285
Query: 187 TAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIV 246
I G F Q F +M IK + T S+ C D G+Q+H I
Sbjct: 286 NVMISGYVSNGCFSQALLLFIKMMVWGIKPDYSTMVSLFSLCSESLDIA-FGKQIHGLIF 344
Query: 247 KIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEAT 306
K GL+++ V+ L+DMY KC + ++F N+ W+A++ ++G +A
Sbjct: 345 KFGLKNNIRVETALLDMYLKCGDMGTGLKIFRR-SQNHNLIMWSAVISNCAQSGCPTKAL 403
Query: 307 KFLYLMK-ASGIQIQESLINDLRIACSSIS 335
+ Y K G+ L+ LR ACSS++
Sbjct: 404 ELFYEFKMEDGLADSGILVAVLR-ACSSLT 432
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 72/284 (25%), Positives = 134/284 (47%), Gaps = 13/284 (4%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL M++ CG + T ++F + W+ +I + + LF E K + G
Sbjct: 358 LLDMYLKCGDMGTGLKIFRRSQNHNLIMWSAVISNCAQSGCPTKALELFYEF-KMEDG-- 414
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+ + I+V VL+AC G Q+HGL K+G ++ + +L++ Y K R + +
Sbjct: 415 --LADSGILVAVLRACSSLTLKPEGMQIHGLATKMGFVSDVFVGSALVDLYAKCRDMGYS 472
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
VF +L + + V W A I ++ + F++M E I+ N+ T + +L C +
Sbjct: 473 KKVFLRLSQKDLVSWNALISGYAQDECADEALKAFRDMQLEEIRPNTVTIACILSVCAHL 532
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
C +++H +++ GL S V L+ Y KC + + FE + ++ ++ SWN+
Sbjct: 533 SVMTLC-KEVHGYLIRQGLGSTVLVSNSLIATYAKCGDINSSLYTFEKMPERNDV-SWNS 590
Query: 292 MLVGYIRNGLYVEATKFLYL---MKASGIQIQESLINDLRIACS 332
+++G G++ + + L M ASGI+ + ACS
Sbjct: 591 IILGM---GMHSRTDEMIVLFDKMVASGIKPDHVTFTAILSACS 631
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 72/140 (51%), Gaps = 9/140 (6%)
Query: 195 REGHFHQVFNDFKEMGRERIKKNSYT-FSSVLKACGGVDDDGNCGRQMHANIVKIGLESD 253
+G F + +M + +K + F ++KA GG+ D GRQ+H +++K+G+ D
Sbjct: 85 EDGFFDDAIGVYLKMLDDGVKVEEFRYFPCLIKAFGGLCDVYK-GRQIHGHVLKLGVLDD 143
Query: 254 EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMK 313
V L+ MY KC ++ DA ++FE + + ++ SWN M+ G+ ++ Y + F M
Sbjct: 144 VSVVNSLLTMYWKCGVVEDAVQMFEKM-PEVDLVSWNTMISGFQKSMDYTRSLMFFRSM- 201
Query: 314 ASGIQIQESLINDLRIACSS 333
+ E I R+AC S
Sbjct: 202 -----VWEFGIYPNRVACVS 216
>gi|449433569|ref|XP_004134570.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Cucumis sativus]
Length = 705
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 75/262 (28%), Positives = 135/262 (51%), Gaps = 7/262 (2%)
Query: 57 VSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP 116
VS D+ R++F+ MP +D SW +I G Y+E + + EM G L
Sbjct: 184 VSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREM-----GGANLKPD 238
Query: 117 AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFS 176
++ + VL +++ GK++HG + G +I + SLI+ Y K + D+ VF+
Sbjct: 239 SFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFT 298
Query: 177 QLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGN 236
L + + W + I + G F + F++M +IK SY+FSS++ AC + +
Sbjct: 299 LLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTL-H 357
Query: 237 CGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGY 296
G+Q+H I + G + + ++ LVDMY KC +R A+++F+ + +++ SW AM++G
Sbjct: 358 LGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRM-RLRDMVSWTAMIMGC 416
Query: 297 IRNGLYVEATKFLYLMKASGIQ 318
+G +A + M+ GI+
Sbjct: 417 ALHGQAPDAIELFEQMETEGIK 438
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 78/306 (25%), Positives = 141/306 (46%), Gaps = 39/306 (12%)
Query: 62 LDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIV 121
L + +LF+ + +W +I Y + + F M+ VFP+
Sbjct: 56 LHDSLRLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPS---- 111
Query: 122 CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADF-------- 173
VLK+C M++ LG+ +HG + ++G ++ +L+N Y K R LE++
Sbjct: 112 -VLKSCALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEV 170
Query: 174 ------------------------VFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEM 209
+F + + V W I N R G + + +EM
Sbjct: 171 FDEMTERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREM 230
Query: 210 GRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRL 269
G +K +S+T SSVL + D + G+++H ++ GL++D YV L+DMY KC
Sbjct: 231 GGANLKPDSFTLSSVLPLIAE-NVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTR 289
Query: 270 LRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRI 329
+ D+ RVF L+ ++ I SWN+++ G ++NGL+ E +F M + I+ + + +
Sbjct: 290 VADSCRVFTLLTERDGI-SWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMP 348
Query: 330 ACSSIS 335
AC+ ++
Sbjct: 349 ACAHLT 354
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 66/159 (41%), Gaps = 15/159 (9%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R + + L+ M+ CG + TA+Q+FD M LRD SW MI+G + I
Sbjct: 368 RNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIE 427
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACV-CTMNMELGKQVHGLLFKLGSSRNISLTGS 157
LF +M I VL AC + E K + + G + + +
Sbjct: 428 LFEQMETEG------------IKAVLTACSHGGLVDEAWKYFNSMTRDFGIAPGVEHYAA 475
Query: 158 LINFYGKFRCLEDA-DFVFSQLKRHNTVVWTAKIVNNCR 195
+ + G+ LE+A DF+ +W A +++ CR
Sbjct: 476 VSDLLGRAGRLEEAYDFICGMHIGPTGSIW-ATLLSACR 513
>gi|302773754|ref|XP_002970294.1| hypothetical protein SELMODRAFT_93439 [Selaginella moellendorffii]
gi|300161810|gb|EFJ28424.1| hypothetical protein SELMODRAFT_93439 [Selaginella moellendorffii]
Length = 1096
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 89/326 (27%), Positives = 144/326 (44%), Gaps = 11/326 (3%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
Y L+++C QK +A + HI N L+ M+ CG L A ++F+ +
Sbjct: 29 YASLLQKCAEQKSAAAGKLVHQHILSS-GCGVNRYLQNHLIFMYAKCGCLQDAVEVFELL 87
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN 132
P + SW +I Y +E + F +M VF VL AC
Sbjct: 88 PCPNVFSWTALITAYAKEGHLREVLGFFRKMQLDGTKPDAFVFST-----VLTACSSAGA 142
Query: 133 MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192
+ GK +H + G + + +++N YGK + +A VF +L N V W A I
Sbjct: 143 LNEGKAIHDCVVLAGMETQV-VGNAIVNLYGKCGRVHEAKAVFERLPERNLVSWNALIAA 201
Query: 193 NCREGHFHQVFNDFKEMGRE-RIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLE 251
N + GH F+ M + ++ N TF SV+ AC + D G+ H I++ G +
Sbjct: 202 NAQNGHCKDAMQVFQLMDLDGSVRPNDATFVSVVDACSNLLDLPR-GKSTHERIIRTGFD 260
Query: 252 SDEYVQCGLVDMYGKCRLLRDAERVFE--LIVDKKNIASWNAMLVGYIRNGLYVEATKFL 309
S +V LV+MYGKC + A VFE + D ++ SW ++ + NG +EA
Sbjct: 261 SYLFVGNSLVNMYGKCGSVDHARLVFEKMRLRDVLSVYSWTVIIAAFAHNGHLLEAFVLF 320
Query: 310 YLMKASGIQIQESLINDLRIACSSIS 335
Y M G+ + + AC++++
Sbjct: 321 YKMDLEGVLPNKVTFVTVLRACTTLA 346
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 70/286 (24%), Positives = 123/286 (43%), Gaps = 11/286 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFN-SWAVMIVGYVDVADYQECITLFAEMMKRKK 108
N + + CG L A+ FD + ++ +W MI G + ++ + F +M
Sbjct: 562 NAAVSAYARCGSLKEAKAAFDAIQWKNNAVTWNAMISGLAQHGESKQALECFWKMELEGV 621
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+ + A L+AC ++ G+Q+H + L + +L+ ++IN YGK L
Sbjct: 622 RANSVTYLA-----SLEACSSLKDLTRGRQLHARIL-LENIHEANLSNAVINMYGKCGSL 675
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
++A F ++ + + W I + G Q FK+M E + T+ + AC
Sbjct: 676 DEAMDEFVKMPERDVISWNTMIATYAQHGSGRQALEFFKQMDLEGWTPDRATYLGAIDAC 735
Query: 229 GGVDDDGNCGRQMHANIVKIG--LESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
G V G+ +H+ + LE D V LV MY +C L DA+ VF +N+
Sbjct: 736 GSVPSLA-LGKTIHSIVATAAPCLEQDPGVATALVTMYARCGSLHDAKSVF-WRSHSRNL 793
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+W+ ++ ++G EA M+ G + + L ACS
Sbjct: 794 VTWSNLIAACAQHGRENEALDLFREMQLQGTKPDALTFSTLVAACS 839
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 118/262 (45%), Gaps = 24/262 (9%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N ++ M+ CG LD A F +MP RD SW MI Y ++ + F +M
Sbjct: 663 NAVINMYGKCGSLDEAMDEFVKMPERDVISWNTMIATYAQHGSGRQALEFFKQMD----- 717
Query: 110 HMLLVFPAWI-----IVCVLKACVCTMNMELGKQVHGLLFKLGS--SRNISLTGSLINFY 162
W + + AC ++ LGK +H ++ ++ + +L+ Y
Sbjct: 718 -----LEGWTPDRATYLGAIDACGSVPSLALGKTIHSIVATAAPCLEQDPGVATALVTMY 772
Query: 163 GKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFS 222
+ L DA VF + N V W+ I + G ++ + F+EM + K ++ TFS
Sbjct: 773 ARCGSLHDAKSVFWRSHSRNLVTWSNLIAACAQHGRENEALDLFREMQLQGTKPDALTFS 832
Query: 223 SVLKACG--GVDDDGNCGRQMHANIVKIGL--ESDEYVQCGLVDMYGKCRLLRDAERVFE 278
+++ AC GV DG GR++ + ++ S E+ C +V++ G+ L +AE + +
Sbjct: 833 TLVAACSRRGVVKDG--GRRIFDALGRVYPVSASAEHYGC-MVEVLGRAGKLEEAEGLIQ 889
Query: 279 LIVDKKNIASWNAMLVGYIRNG 300
+ K + A W A+L R G
Sbjct: 890 GMPRKASGAIWMALLAACNRRG 911
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 73/323 (22%), Positives = 134/323 (41%), Gaps = 20/323 (6%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
+ +++ CT F + H+ ++ F++ + G L AR +F+ +
Sbjct: 335 FVTVLRACTTLAQCEKIFARVKHLGLELDTTLGTAFVSTFAKL----GDLAAARDVFENL 390
Query: 73 -PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTM 131
R+ SW VMI Y + L+ M A + V+ +C+
Sbjct: 391 GSSRNVVSWTVMIWAYAQQGFIRAAFDLYKRMDCEPN--------AVTFMAVMDSCLRPE 442
Query: 132 NMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIV 191
++ +Q+H + G ++ L L+ YGK ++ A +F LK + V W + +
Sbjct: 443 DLPRAEQIHAHMVASGFESDVVLQVCLVTMYGKCGSVDSAWSIFENLKERSVVAWNSMLS 502
Query: 192 NNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLE 251
G + + ++ M E K + T+ +VL AC V + R+ A LE
Sbjct: 503 AFASNGCYERSLKLYERMLLEGTKPDKITYLAVLDACQSVSE----ARRYAATFE---LE 555
Query: 252 SDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYL 311
D + V Y +C L++A+ F+ I K N +WNAM+ G ++G +A + +
Sbjct: 556 LDIAARNAAVSAYARCGSLKEAKAAFDAIQWKNNAVTWNAMISGLAQHGESKQALECFWK 615
Query: 312 MKASGIQIQESLINDLRIACSSI 334
M+ G++ ACSS+
Sbjct: 616 MELEGVRANSVTYLASLEACSSL 638
>gi|242066256|ref|XP_002454417.1| hypothetical protein SORBIDRAFT_04g030430 [Sorghum bicolor]
gi|241934248|gb|EES07393.1| hypothetical protein SORBIDRAFT_04g030430 [Sorghum bicolor]
Length = 703
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 92/313 (29%), Positives = 148/313 (47%), Gaps = 24/313 (7%)
Query: 33 LNHIRK---------RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVM 83
L H+RK R ++ L +N +L +V G + +LF+ M RD +W+ M
Sbjct: 213 LGHVRKGQACHAYVVRNSLGYDLALVNTVLSFYVKIGDFQASMRLFEGMTDRDVITWSCM 272
Query: 84 IVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGL 142
I GYV D E + ++ EM+K + V P + +V VL+AC ++ E GK+VH +
Sbjct: 273 IKGYVQHGDAHEGLRMYREMVKAR------VQPNSVTLVSVLQACALVVDAEEGKRVHRV 326
Query: 143 LFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQV 202
+G + + +L++ Y K C E+A +F ++ + + V W A I + +
Sbjct: 327 AVSIGCELEVGVATALVDMYMKCSCHEEAMCLFHRMPKKDVVAWAAVIGGLTQNELPGES 386
Query: 203 FNDFKEMGRERIKKNSYTFSSVLKAC---GGVDDDGNCGRQMHANIVKIGLESDEYVQCG 259
+ FK M + ++ T VL AC GG +H +V+ G ++ +V
Sbjct: 387 LHVFKCMLLDDHVPDAITMVKVLAACSEFGGT----RLAICLHGYLVRNGFNNNAFVAAA 442
Query: 260 LVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQI 319
L+D+Y KC + A RVFE + K+I W +M+ GY +GL EA M AS IQ
Sbjct: 443 LLDLYSKCGDIDSAVRVFEGTTE-KDIVVWGSMIAGYGAHGLGQEAVALYQRMIASSIQP 501
Query: 320 QESLINDLRIACS 332
+ ACS
Sbjct: 502 NSVTFVSVLSACS 514
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/254 (24%), Positives = 119/254 (46%), Gaps = 6/254 (2%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
++ M+ CG + A + + D ++ GY +E + FA + G
Sbjct: 139 IVQMYARCGDMVGAINAYGVLEKPDIVLRTSVVTGYEQNGMAEEALEFFA---RNVVGQG 195
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+++ P +V + A ++ G+ H + + +++L ++++FY K + +
Sbjct: 196 VMLTPV-TLVSAMSAAAQLGHVRKGQACHAYVVRNSLGYDLALVNTVLSFYVKIGDFQAS 254
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
+F + + + W+ I + G H+ ++EM + R++ NS T SVL+AC V
Sbjct: 255 MRLFEGMTDRDVITWSCMIKGYVQHGDAHEGLRMYREMVKARVQPNSVTLVSVLQACALV 314
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
D G+++H V IG E + V LVDMY KC +A +F + KK++ +W A
Sbjct: 315 -VDAEEGKRVHRVAVSIGCELEVGVATALVDMYMKCSCHEEAMCLFHRM-PKKDVVAWAA 372
Query: 292 MLVGYIRNGLYVEA 305
++ G +N L E+
Sbjct: 373 VIGGLTQNELPGES 386
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 109/248 (43%), Gaps = 13/248 (5%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M++ C + A LF MP +D +WA +I G E + +F M+
Sbjct: 342 LVDMYMKCSCHEEAMCLFHRMPKKDVVAWAAVIGGLTQNELPGESLHVFKCMLLDDH--- 398
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
V A +V VL AC L +HG L + G + N + +L++ Y K ++ A
Sbjct: 399 --VPDAITMVKVLAACSEFGGTRLAICLHGYLVRNGFNNNAFVAAALLDLYSKCGDIDSA 456
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--- 228
VF + VVW + I G + ++ M I+ NS TF SVL AC
Sbjct: 457 VRVFEGTTEKDIVVWGSMIAGYGAHGLGQEAVALYQRMIASSIQPNSVTFVSVLSACSHS 516
Query: 229 GGVDDDGNCGRQMHANIVKI-GLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
G V + G Q+ ++ ++ G+ + Q +VD+ G+ L++A R + +
Sbjct: 517 GLVQE----GIQIFDSMTQVFGVVPNAEHQSAMVDLLGRAGELQEAIRFIRGMDGRAVAH 572
Query: 288 SWNAMLVG 295
+W A+L
Sbjct: 573 TWCALLAA 580
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/270 (18%), Positives = 113/270 (41%), Gaps = 12/270 (4%)
Query: 65 ARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVL 124
AR LFDE P ++ ++ ++ I L + R G + +L
Sbjct: 53 ARDLFDEFPSPTPRLANALLRAHIRARQWRAAILLGPRLRVRLDG--------FTFSLLL 104
Query: 125 KACVCTMNMELGKQVHGLLFK-LGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNT 183
+AC ++ G+ VH + + +S + + +++ Y + + A + L++ +
Sbjct: 105 RACAALPSLAHGRAVHAVAIRSCTASEDAFVATAIVQMYARCGDMVGAINAYGVLEKPDI 164
Query: 184 VVWTAKIVNNCREGHFHQVFNDF-KEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
V+ T+ + + G + F + + + + T S + A + G+ H
Sbjct: 165 VLRTSVVTGYEQNGMAEEALEFFARNVVGQGVMLTPVTLVSAMSAAAQLGHVRK-GQACH 223
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
A +V+ L D + ++ Y K + + R+FE + D+ ++ +W+ M+ GY+++G
Sbjct: 224 AYVVRNSLGYDLALVNTVLSFYVKIGDFQASMRLFEGMTDR-DVITWSCMIKGYVQHGDA 282
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIACS 332
E + M + +Q + + AC+
Sbjct: 283 HEGLRMYREMVKARVQPNSVTLVSVLQACA 312
>gi|357131877|ref|XP_003567560.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Brachypodium distachyon]
Length = 808
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 81/292 (27%), Positives = 145/292 (49%), Gaps = 10/292 (3%)
Query: 43 KPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAE 102
K +L LL M+ CG L A ++F+ M +R+ +W+ ++ G+V E +LF +
Sbjct: 265 KDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWSALVGGFVLCGRMLEAFSLFKD 324
Query: 103 MMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFY 162
M+ + L + L+AC ++ LGKQ+H LL K G +++ SL++ Y
Sbjct: 325 MLAQG----LCFLSPTSVASALRACANLSDLCLGKQLHALLAKSGLHTDLTAGNSLLSMY 380
Query: 163 GKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFS 222
K ++ A +F Q+ +TV ++A + + G + F F++M ++ + T
Sbjct: 381 AKAGLIDQATTLFDQMVVKDTVSYSALVSGYVQNGKADEAFRVFRKMQACNVQPDVATMV 440
Query: 223 SVLKACGGVD--DDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELI 280
S++ AC + G CG H +++ G+ S+ + L+DMY KC + + ++F+ +
Sbjct: 441 SLIPACSHLAALQHGKCG---HGSVIVRGIASETSICNALIDMYAKCGRIDLSRQIFD-V 496
Query: 281 VDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+ ++I SWN M+ GY +GL EAT MK + + L ACS
Sbjct: 497 MPARDIVSWNTMIAGYGIHGLGKEATALFLDMKHQACEPDDVTFICLISACS 548
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 88/330 (26%), Positives = 146/330 (44%), Gaps = 16/330 (4%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
+ ++K C+ D A + H R + L L+ ++ C A +F M
Sbjct: 132 FPFVLKACSALLDLRSARAVHCHA-ARAGLHADLFVSTALVDVYAKCASFRHAATVFRRM 190
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN 132
P RD +W M+ GY Y + I M + A +V +L
Sbjct: 191 PARDVVAWNAMLAGYALHGKYSDTIACLLLMQDDHAPN------ASTLVALLPLLAQHGA 244
Query: 133 MELGKQVHGLLFK---LGSSRNISLTGS-LINFYGKFRCLEDADFVFSQLKRHNTVVWTA 188
+ G+ VH + L ++ L G+ L++ Y K L A VF + N V W+A
Sbjct: 245 LSQGRAVHAYSVRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWSA 304
Query: 189 KIVNNCREGHFHQVFNDFKEMGRERIKKNSYT-FSSVLKACGGVDDDGNC-GRQMHANIV 246
+ G + F+ FK+M + + S T +S L+AC + D C G+Q+HA +
Sbjct: 305 LVGGFVLCGRMLEAFSLFKDMLAQGLCFLSPTSVASALRACANLSD--LCLGKQLHALLA 362
Query: 247 KIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEAT 306
K GL +D L+ MY K L+ A +F+ +V K + S++A++ GY++NG EA
Sbjct: 363 KSGLHTDLTAGNSLLSMYAKAGLIDQATTLFDQMVVKDTV-SYSALVSGYVQNGKADEAF 421
Query: 307 KFLYLMKASGIQIQESLINDLRIACSSISA 336
+ M+A +Q + + L ACS ++A
Sbjct: 422 RVFRKMQACNVQPDVATMVSLIPACSHLAA 451
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 71/285 (24%), Positives = 117/285 (41%), Gaps = 19/285 (6%)
Query: 59 CGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAW 118
CG L AR LFD++P + + +I Y + +R FP
Sbjct: 76 CGDLSLARHLFDQIPAPGIHDYNALIRAYSLRGPALALRLYRSLRRRRLPQPNNYTFP-- 133
Query: 119 IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL 178
VLKAC +++ + VH + G ++ ++ +L++ Y K A VF ++
Sbjct: 134 ---FVLKACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRM 190
Query: 179 KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFS--SVLKACGGVDDDGN 236
+ V W A + G + M + S + +L G +
Sbjct: 191 PARDVVAWNAMLAGYALHGKYSDTIACLLLMQDDHAPNASTLVALLPLLAQHGALSQ--- 247
Query: 237 CGRQMHANIVKIGLESDE----YVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAM 292
GR +HA V+ D V L+DMY KC L A RVFE + +N +W+A+
Sbjct: 248 -GRAVHAYSVRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMA-VRNEVTWSAL 305
Query: 293 LVGYIRNGLYVEATKFLYLMKASGIQI--QESLINDLRIACSSIS 335
+ G++ G +EA M A G+ S+ + LR AC+++S
Sbjct: 306 VGGFVLCGRMLEAFSLFKDMLAQGLCFLSPTSVASALR-ACANLS 349
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 109/247 (44%), Gaps = 11/247 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N LL M+ G +D A LFD+M ++D S++ ++ GYV E +F +M
Sbjct: 374 NSLLSMYAKAGLIDQATTLFDQMVVKDTVSYSALVSGYVQNGKADEAFRVFRKMQACN-- 431
Query: 110 HMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
V P +V ++ AC ++ GK HG + G + S+ +LI+ Y K +
Sbjct: 432 ----VQPDVATMVSLIPACSHLAALQHGKCGHGSVIVRGIASETSICNALIDMYAKCGRI 487
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+ + +F + + V W I G + F +M + + + TF ++ AC
Sbjct: 488 DLSRQIFDVMPARDIVSWNTMIAGYGIHGLGKEATALFLDMKHQACEPDDVTFICLISAC 547
Query: 229 G--GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
G+ +G M A+ I + Y+ G+VD+ + L +A + + + K ++
Sbjct: 548 SHSGLVTEGKRWFHMMAHKYGITPRMEHYI--GMVDLLARGGFLDEAYQFIQGMPLKADV 605
Query: 287 ASWNAML 293
W A+L
Sbjct: 606 RVWGALL 612
>gi|449441113|ref|XP_004138328.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18485-like [Cucumis sativus]
Length = 990
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 93/331 (28%), Positives = 164/331 (49%), Gaps = 22/331 (6%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVN---IKPTL---LFL-NRLLLMHVSCGQLDTA 65
+ CLIK CT + D H+ K V+ +K L LF+ N ++ ++ CG LD A
Sbjct: 213 FPCLIKACTGKCDI--------HLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEA 264
Query: 66 RQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLK 125
+LFD+MP ++ SW +I G+ + + E F +++ G L+ +V +L
Sbjct: 265 VELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDG---LIPDVATMVTLLP 321
Query: 126 ACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVV 185
C N+++G +HG+ KLG + + +LI+ Y K CL +A +F +++ + V
Sbjct: 322 VCSGEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVS 381
Query: 186 WTAKIVNNCREGHFHQVFNDFKEMGRER--IKKNSYTFSSVLKACGGVDDDGNCGRQMHA 243
W + I REG + F+ ++M E ++ N T ++L AC + + R +H
Sbjct: 382 WNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPAC-LEESELLSLRALHG 440
Query: 244 NIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYV 303
++ + E + + Y KC L AE VF ++ K+++SWNA++ G+ +NG +
Sbjct: 441 YSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVF-FGMNTKSVSSWNAVIGGHAQNGDPI 499
Query: 304 EATKFLYLMKASGIQIQESLINDLRIACSSI 334
+A F + M GI + I L +AC +
Sbjct: 500 KALDFYFEMTRLGILPDDFSIVSLLLACGRL 530
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/286 (27%), Positives = 139/286 (48%), Gaps = 12/286 (4%)
Query: 51 RLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGH 110
RL+ M+ CG +R +FD + ++ W ++ GYV Y E I F E++ +
Sbjct: 148 RLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLELISVTEFQ 207
Query: 111 M-LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
FP C++KAC ++ LGK VHG+ K+G ++ + ++I YGK L+
Sbjct: 208 PDNFTFP-----CLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLD 262
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEM--GRERIKKNSYTFSSVLKA 227
+A +F ++ N + W + I G + + + F+ + + + + T ++L
Sbjct: 263 EAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPV 322
Query: 228 CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
C G + + + G +H VK+GL + V L+DMY KC L +A +F I + K++
Sbjct: 323 CSG-EGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKI-ENKSVV 380
Query: 288 SWNAMLVGYIRNGLYVEATKFL--YLMKASGIQIQESLINDLRIAC 331
SWN+M+ Y R G E L M+ +++ E I +L AC
Sbjct: 381 SWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPAC 426
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 72/272 (26%), Positives = 129/272 (47%), Gaps = 13/272 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N + + CG L A +F M + +SW +I G+ D + + + EM +
Sbjct: 455 NAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTR---- 510
Query: 110 HMLLVFPA-WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
L + P + IV +L AC ++ GK++HG + + G N + SL++ Y F C
Sbjct: 511 --LGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLLSLY--FHCS 566
Query: 169 ED--ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
+ F + N+V W A + + ++ + F++M + ++ + +S+L
Sbjct: 567 KPFYGRTYFETMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEIAIASILG 626
Query: 227 ACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
AC + G G+++H +K L D +V C L+DMY K L ++R+F + + K +
Sbjct: 627 ACSQLSALG-LGKEVHCFALKNSLMEDNFVACSLMDMYAKSGFLGHSQRIFNRL-NGKEV 684
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
ASWN M+ G+ +G +A + MK S Q
Sbjct: 685 ASWNVMITGFGVHGQGNKAVELFEDMKRSDKQ 716
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 78/291 (26%), Positives = 129/291 (44%), Gaps = 5/291 (1%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L+ N L+ M+ CG L A LF ++ + SW MI Y E L +M
Sbjct: 348 LMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWM 407
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
++ L+ I+ +L AC+ + + +HG + + + I Y K
Sbjct: 408 EEE---LMEVNEVTILNLLPACLEESELLSLRALHGYSLRHSFQYKELINNAFIAAYAKC 464
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
L A+ VF + + W A I + + G + + + EM R I + ++ S+L
Sbjct: 465 GSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLL 524
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
ACG + G+++H +++ GLE + +V L+ +Y C FE + DK +
Sbjct: 525 LACGRLGLL-QYGKEIHGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFETMGDKNS 583
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+ WNAML GY +N L EA M + G++ E I + ACS +SA
Sbjct: 584 VC-WNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEIAIASILGACSQLSA 633
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 103/242 (42%), Gaps = 13/242 (5%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL ++ C + R F+ M ++ W M+ GY E ++LF +M+
Sbjct: 558 LLSLYFHCSKPFYGRTYFETMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDG---- 613
Query: 112 LLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
+ P I I +L AC + LGK+VH K + + SL++ Y K L
Sbjct: 614 --LEPDEIAIASILGACSQLSALGLGKEVHCFALKNSLMEDNFVACSLMDMYAKSGFLGH 671
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC-- 228
+ +F++L W I G ++ F++M R + + +TF VL+AC
Sbjct: 672 SQRIFNRLNGKEVASWNVMITGFGVHGQGNKAVELFEDMKRSDKQPDRFTFLGVLQACCH 731
Query: 229 -GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
G V + N QM + K+ E + Y C ++DM G+ L +A + ++ +
Sbjct: 732 AGLVSEGLNYLAQMQT-LYKLEPELEHYA-C-VIDMLGRAGRLNEALNFINEMPEEPDAK 788
Query: 288 SW 289
W
Sbjct: 789 IW 790
>gi|449477503|ref|XP_004155042.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18485-like [Cucumis sativus]
Length = 990
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 93/331 (28%), Positives = 164/331 (49%), Gaps = 22/331 (6%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVN---IKPTL---LFL-NRLLLMHVSCGQLDTA 65
+ CLIK CT + D H+ K V+ +K L LF+ N ++ ++ CG LD A
Sbjct: 213 FPCLIKACTGKCDI--------HLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEA 264
Query: 66 RQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLK 125
+LFD+MP ++ SW +I G+ + + E F +++ G L+ +V +L
Sbjct: 265 VELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDG---LIPDVATMVTLLP 321
Query: 126 ACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVV 185
C N+++G +HG+ KLG + + +LI+ Y K CL +A +F +++ + V
Sbjct: 322 VCSGEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVS 381
Query: 186 WTAKIVNNCREGHFHQVFNDFKEMGRER--IKKNSYTFSSVLKACGGVDDDGNCGRQMHA 243
W + I REG + F+ ++M E ++ N T ++L AC + + R +H
Sbjct: 382 WNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLE-ESELLSLRALHG 440
Query: 244 NIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYV 303
++ + E + + Y KC L AE VF ++ K+++SWNA++ G+ +NG +
Sbjct: 441 YSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVF-FGMNTKSVSSWNAVIGGHAQNGDPI 499
Query: 304 EATKFLYLMKASGIQIQESLINDLRIACSSI 334
+A F + M GI + I L +AC +
Sbjct: 500 KALDFYFEMTRLGILPDDFSIVSLLLACGRL 530
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/286 (27%), Positives = 139/286 (48%), Gaps = 12/286 (4%)
Query: 51 RLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGH 110
RL+ M+ CG +R +FD + ++ W ++ GYV Y E I F E++ +
Sbjct: 148 RLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLELISVTEFQ 207
Query: 111 M-LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
FP C++KAC ++ LGK VHG+ K+G ++ + ++I YGK L+
Sbjct: 208 PDNFTFP-----CLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLD 262
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEM--GRERIKKNSYTFSSVLKA 227
+A +F ++ N + W + I G + + + F+ + + + + T ++L
Sbjct: 263 EAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPV 322
Query: 228 CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
C G + + + G +H VK+GL + V L+DMY KC L +A +F I + K++
Sbjct: 323 CSG-EGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKI-ENKSVV 380
Query: 288 SWNAMLVGYIRNGLYVEATKFL--YLMKASGIQIQESLINDLRIAC 331
SWN+M+ Y R G E L M+ +++ E I +L AC
Sbjct: 381 SWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPAC 426
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 72/272 (26%), Positives = 130/272 (47%), Gaps = 13/272 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N + + CG L A +F M + +SW +I G+ D + + + EM +
Sbjct: 455 NAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTR---- 510
Query: 110 HMLLVFPA-WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
L + P + IV +L AC ++ GK++HG + + G N + SL++ Y F C
Sbjct: 511 --LGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLLSLY--FHCS 566
Query: 169 ED--ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
+ F ++ N+V W A + + ++ + F++M + ++ + +S+L
Sbjct: 567 KPFYGRTYFERMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEIAIASILG 626
Query: 227 ACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
AC + G G+++H +K L D +V C L+DMY K L ++R+F + + K +
Sbjct: 627 ACSQLSALG-LGKEVHCFALKNSLMEDNFVACSLMDMYAKSGFLGHSQRIFNRL-NGKEV 684
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
ASWN M+ G+ +G +A + MK S Q
Sbjct: 685 ASWNVMITGFGVHGQGNKAVELFEDMKRSDKQ 716
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 78/291 (26%), Positives = 129/291 (44%), Gaps = 5/291 (1%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L+ N L+ M+ CG L A LF ++ + SW MI Y E L +M
Sbjct: 348 LMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWM 407
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
++ L+ I+ +L AC+ + + +HG + + + I Y K
Sbjct: 408 EEE---LMEVNEVTILNLLPACLEESELLSLRALHGYSLRHSFQYKELINNAFIAAYAKC 464
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
L A+ VF + + W A I + + G + + + EM R I + ++ S+L
Sbjct: 465 GSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLL 524
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
ACG + G+++H +++ GLE + +V L+ +Y C FE + DK +
Sbjct: 525 LACGRLGLL-QYGKEIHGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFERMGDKNS 583
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+ WNAML GY +N L EA M + G++ E I + ACS +SA
Sbjct: 584 VC-WNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEIAIASILGACSQLSA 633
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 103/242 (42%), Gaps = 13/242 (5%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL ++ C + R F+ M ++ W M+ GY E ++LF +M+
Sbjct: 558 LLSLYFHCSKPFYGRTYFERMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDG---- 613
Query: 112 LLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
+ P I I +L AC + LGK+VH K + + SL++ Y K L
Sbjct: 614 --LEPDEIAIASILGACSQLSALGLGKEVHCFALKNSLMEDNFVACSLMDMYAKSGFLGH 671
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC-- 228
+ +F++L W I G ++ F++M R + + +TF VL+AC
Sbjct: 672 SQRIFNRLNGKEVASWNVMITGFGVHGQGNKAVELFEDMKRSDKQPDRFTFLGVLQACCH 731
Query: 229 -GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
G V + N QM + K+ E + Y C ++DM G+ L +A + ++ +
Sbjct: 732 AGLVSEGLNYLAQMQT-LYKLEPELEHYA-C-VIDMLGRAGRLNEALNFINEMPEEPDAK 788
Query: 288 SW 289
W
Sbjct: 789 IW 790
>gi|356532922|ref|XP_003535018.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g03540-like [Glycine max]
Length = 611
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 87/282 (30%), Positives = 144/282 (51%), Gaps = 15/282 (5%)
Query: 61 QLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWI 119
AR LFD +P +D +W +I G+V A + + LF +M+ + + P A+
Sbjct: 104 HFSQARALFDALPFKDVIAWTSIISGHVQKAQPKTAVHLFLQMLGQA------IEPNAFT 157
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLG-SSRNISLTGSLINFYGKFRCLEDADFVFSQL 178
+ +LKAC N+ LGK +H ++F G S N + +LI+ YG+ R ++DA VF +L
Sbjct: 158 LSSILKACSQLENLHLGKTLHAVVFIRGFHSNNNVVACALIDMYGRSRVVDDARKVFDEL 217
Query: 179 KRHNTVVWTAKIVNNCREGHFHQVFNDFKEM--GRERIKKNSYTFSSVLKACGGVDDDGN 236
+ V WTA I R F + F M G ++ + +TF ++L ACG +
Sbjct: 218 PEPDYVCWTAVISTLARNDRFREAVRVFFAMHDGGLGLEVDGFTFGTLLNACGNLGWL-R 276
Query: 237 CGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGY 296
GR++H +V +G++ + +V+ L+DMYGKC + A VF+ + ++KN + AML Y
Sbjct: 277 MGREVHGKVVTLGMKGNVFVESSLLDMYGKCGEVGCARVVFDGL-EEKNEVALTAMLGVY 335
Query: 297 IRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASK 338
NG E L L++ + + ACS ++A +
Sbjct: 336 CHNG---ECGSVLGLVREWRSMVDVYSFGTIIRACSGLAAVR 374
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 77/271 (28%), Positives = 130/271 (47%), Gaps = 8/271 (2%)
Query: 62 LDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIV 121
+D AR++FDE+P D+ W +I ++E + +F M G + L +
Sbjct: 207 VDDARKVFDELPEPDYVCWTAVISTLARNDRFREAVRVFFAM---HDGGLGLEVDGFTFG 263
Query: 122 CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH 181
+L AC + +G++VHG + LG N+ + SL++ YGK + A VF L+
Sbjct: 264 TLLNACGNLGWLRMGREVHGKVVTLGMKGNVFVESSLLDMYGKCGEVGCARVVFDGLEEK 323
Query: 182 NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQM 241
N V TA + C G V +E R + Y+F ++++AC G+ G ++
Sbjct: 324 NEVALTAMLGVYCHNGECGSVLGLVREW---RSMVDVYSFGTIIRACSGLAAVRQ-GNEV 379
Query: 242 HANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGL 301
H V+ G D V+ LVD+Y KC + A R+F + + +N+ +WNAM+ G+ +NG
Sbjct: 380 HCQYVRRGGWRDVVVESALVDLYAKCGSVDFAYRLFSRM-EARNLITWNAMIGGFAQNGR 438
Query: 302 YVEATKFLYLMKASGIQIQESLINDLRIACS 332
E + M G++ ++ ACS
Sbjct: 439 GQEGVELFEEMVKEGVRPDWISFVNVLFACS 469
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 61/270 (22%), Positives = 123/270 (45%), Gaps = 12/270 (4%)
Query: 40 VNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITL 99
+ +K + + LL M+ CG++ AR +FD + ++ + M+ Y EC ++
Sbjct: 288 LGMKGNVFVESSLLDMYGKCGEVGCARVVFDGLEEKNEVALTAMLGVYCHNG---ECGSV 344
Query: 100 FAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLI 159
+ R+ M+ V+ I+ +AC + G +VH + G R++ + +L+
Sbjct: 345 LG--LVREWRSMVDVYSFGTII---RACSGLAAVRQGNEVHCQYVRRGGWRDVVVESALV 399
Query: 160 NFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSY 219
+ Y K ++ A +FS+++ N + W A I + G + F+EM +E ++ +
Sbjct: 400 DLYAKCGSVDFAYRLFSRMEARNLITWNAMIGGFAQNGRGQEGVELFEEMVKEGVRPDWI 459
Query: 220 TFSSVLKACG--GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVF 277
+F +VL AC G+ D G R + G+ ++D+ G+ L+ +AE +
Sbjct: 460 SFVNVLFACSHNGLVDQGR--RYFDLMRREYGIRPGVVHYTCMIDILGRAELIEEAESLL 517
Query: 278 ELIVDKKNIASWNAMLVGYIRNGLYVEATK 307
E + + + W +L + YV A +
Sbjct: 518 ESADCRYDHSRWAVLLGACTKCSDYVTAER 547
>gi|356503988|ref|XP_003520781.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Glycine max]
Length = 771
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 85/281 (30%), Positives = 132/281 (46%), Gaps = 9/281 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL M+ CG + A +FDEMP R+ SW MIVG+V Y I +F E++ +
Sbjct: 241 LLDMYAKCGSMLLAENVFDEMPHRNLVSWNSMIVGFVKNKLYGRAIGVFREVLSLGPDQV 300
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
I VL AC + ++ GKQVHG + K G + + SL++ Y K EDA
Sbjct: 301 -------SISSVLSACAGLVELDFGKQVHGSIVKRGLVGLVYVKNSLVDMYCKCGLFEDA 353
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
+F + V W I+ R +F Q F+ M RE ++ + ++SS+ A +
Sbjct: 354 TKLFCGGGDRDVVTWNVMIMGCFRCRNFEQACTYFQAMIREGVEPDEASYSSLFHASASI 413
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
G +H++++K G + + LV MYGKC + DA +VF + N+ W A
Sbjct: 414 AALTQ-GTMIHSHVLKTGHVKNSRISSSLVTMYGKCGSMLDAYQVFRE-TKEHNVVCWTA 471
Query: 292 MLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
M+ + ++G EA K M G+ + + ACS
Sbjct: 472 MITVFHQHGCANEAIKLFEEMLNEGVVPEYITFVSVLSACS 512
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 84/300 (28%), Positives = 144/300 (48%), Gaps = 13/300 (4%)
Query: 40 VNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFN--SWAVMIVGYVDVADYQECI 97
N +L +N LLL++ CG + LF+ P N +W +I + +
Sbjct: 126 TNNHASLANINTLLLLYAKCGSIHHTLLLFNTYPHPSTNVVTWTTLINQLSRSNKPFQAL 185
Query: 98 TLFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTG 156
T F M R G ++P + +L AC + G+Q+H L+ K + +
Sbjct: 186 TFFNRM--RTTG----IYPNHFTFSAILPACAHAALLSEGQQIHALIHKHCFLNDPFVAT 239
Query: 157 SLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKK 216
+L++ Y K + A+ VF ++ N V W + IV + + + F+E+ +
Sbjct: 240 ALLDMYAKCGSMLLAENVFDEMPHRNLVSWNSMIVGFVKNKLYGRAIGVFREV--LSLGP 297
Query: 217 NSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERV 276
+ + SSVL AC G+ + + G+Q+H +IVK GL YV+ LVDMY KC L DA ++
Sbjct: 298 DQVSISSVLSACAGLVEL-DFGKQVHGSIVKRGLVGLVYVKNSLVDMYCKCGLFEDATKL 356
Query: 277 FELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
F D+ ++ +WN M++G R + +A + M G++ E+ + L A +SI+A
Sbjct: 357 FCGGGDR-DVVTWNVMIMGCFRCRNFEQACTYFQAMIREGVEPDEASYSSLFHASASIAA 415
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 77/249 (30%), Positives = 114/249 (45%), Gaps = 15/249 (6%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ CG + A +LF RD +W VMI+G ++++ T F M++
Sbjct: 338 NSLVDMYCKCGLFEDATKLFCGGGDRDVVTWNVMIMGCFRCRNFEQACTYFQAMIREG-- 395
Query: 110 HMLLVFPAWIIVCVL-KACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
V P L A + G +H + K G +N ++ SL+ YGK +
Sbjct: 396 ----VEPDEASYSSLFHASASIAALTQGTMIHSHVLKTGHVKNSRISSSLVTMYGKCGSM 451
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
DA VF + K HN V WTA I + G ++ F+EM E + TF SVL AC
Sbjct: 452 LDAYQVFRETKEHNVVCWTAMITVFHQHGCANEAIKLFEEMLNEGVVPEYITFVSVLSAC 511
Query: 229 G--GVDDDGNCGRQMHANI--VKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
G DDG AN+ +K GL E+ C +VD+ G+ L +A R E + +
Sbjct: 512 SHTGKIDDGFKYFNSMANVHNIKPGL---EHYAC-MVDLLGRVGRLEEACRFIESMPFEP 567
Query: 285 NIASWNAML 293
+ W A+L
Sbjct: 568 DSLVWGALL 576
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 85/176 (48%), Gaps = 4/176 (2%)
Query: 132 NMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNT--VVWTAK 189
+++ Q+H L + +++ +L+ Y K + +F+ +T V WT
Sbjct: 112 SLKHATQIHSQLVTTNNHASLANINTLLLLYAKCGSIHHTLLLFNTYPHPSTNVVTWTTL 171
Query: 190 IVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIG 249
I R Q F M I N +TFS++L AC G+Q+HA I K
Sbjct: 172 INQLSRSNKPFQALTFFNRMRTTGIYPNHFTFSAILPACAHAALLSE-GQQIHALIHKHC 230
Query: 250 LESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEA 305
+D +V L+DMY KC + AE VF+ + +N+ SWN+M+VG+++N LY A
Sbjct: 231 FLNDPFVATALLDMYAKCGSMLLAENVFDEM-PHRNLVSWNSMIVGFVKNKLYGRA 285
>gi|242074230|ref|XP_002447051.1| hypothetical protein SORBIDRAFT_06g027570 [Sorghum bicolor]
gi|241938234|gb|EES11379.1| hypothetical protein SORBIDRAFT_06g027570 [Sorghum bicolor]
Length = 818
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 84/315 (26%), Positives = 147/315 (46%), Gaps = 9/315 (2%)
Query: 6 LPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTA 65
+P+ + + + +D +L ++ K + ++ N L++M+ CG + TA
Sbjct: 341 VPLDVVTFLSALTAASQSQDGRLGQQLHGYLIKGTHATLPVILGNALVVMYSRCGNVQTA 400
Query: 66 RQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLK 125
+LFD +P +D SW M+ +V E + L +M K + + VL
Sbjct: 401 FKLFDRLPEKDIVSWNTMVTAFVQNDFDLEGLLLVYQMQKS-----CFAADSVTLTAVLS 455
Query: 126 ACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK--RHNT 183
A T ++++GKQ HG L + G + L LI+ Y K +E A VF + +
Sbjct: 456 AASNTGDLQIGKQAHGYLVRRGIE-DEGLESYLIDMYAKSGRIEIAQRVFDDYGNVKRDE 514
Query: 184 VVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHA 243
V W A I + G Q F+ M + ++ S T +SVL AC + G+Q+H
Sbjct: 515 VTWNAMIAGYTQSGQPEQAILTFRAMLQASLEPTSVTLASVLPACDPLGGGLCAGKQIHC 574
Query: 244 NIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYV 303
++ L+++ +V LVDMY KC + AE VF ++++K + S+ M+ G ++G
Sbjct: 575 FALRRCLDTNVFVGTALVDMYSKCGEISTAEHVFAVMIEKSTV-SYTTMISGLGQHGFGE 633
Query: 304 EATKFLYLMKASGIQ 318
A Y M+ G++
Sbjct: 634 RALSLFYYMQEKGLK 648
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 89/319 (27%), Positives = 143/319 (44%), Gaps = 29/319 (9%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKP-TLLFLNRLLLMHVSC------GQLDTA 65
Y+C + C + + H+ +R P T + N LL ++ SC G +D
Sbjct: 136 YSCALTACARTRRLRLGKSVHAHLLRRARSLPDTAVLRNSLLNLYASCMRYRGDGGVDVV 195
Query: 66 RQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMM----KRKKGHMLLVFPAWIIV 121
R+LFD MP R+ SW + YV QE + LFA M+ K + VFPA
Sbjct: 196 RRLFDVMPKRNAVSWNTLFGWYVKTGRPQEALELFARMLEDGIKPTPVSFVNVFPA---- 251
Query: 122 CVLKACVCTMNMELGKQVHGLLFKLGSS--RNISLTGSLINFYGKFRCLEDADFVFSQLK 179
V + ++GLL K G ++ + S I + + L+ A VF
Sbjct: 252 ------VAKEDPSWSFVLYGLLVKHGREYVNDLFVVSSAIAMFSELGDLQSAWRVFEYTA 305
Query: 180 RHNTVVWTAKIVNNCREGHFHQVFN-DFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCG 238
+ NT VW I + G F + + + MG + + + TF S L A DG G
Sbjct: 306 KKNTEVWNTMITGYVQNGKFAEAMDLVIRLMGSKEVPLDVVTFLSALTAA-SQSQDGRLG 364
Query: 239 RQMHANIVKIGLESDEYVQCG--LVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGY 296
+Q+H ++K G + V G LV MY +C ++ A ++F+ + +K+I SWN M+ +
Sbjct: 365 QQLHGYLIK-GTHATLPVILGNALVVMYSRCGNVQTAFKLFDRL-PEKDIVSWNTMVTAF 422
Query: 297 IRNGLYVEATKFLYLMKAS 315
++N +E +Y M+ S
Sbjct: 423 VQNDFDLEGLLLVYQMQKS 441
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 79/313 (25%), Positives = 142/313 (45%), Gaps = 27/313 (8%)
Query: 32 LLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVA 91
L+ H R+ VN L ++ + M G L +A ++F+ ++ W MI GYV
Sbjct: 267 LVKHGREYVN---DLFVVSSAIAMFSELGDLQSAWRVFEYTAKKNTEVWNTMITGYVQNG 323
Query: 92 DYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFK-LGSSR 150
+ E + L +M K+ + +V + L A + + LG+Q+HG L K ++
Sbjct: 324 KFAEAMDLVIRLMGSKEVPLDVV----TFLSALTAASQSQDGRLGQQLHGYLIKGTHATL 379
Query: 151 NISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFK--- 207
+ L +L+ Y + ++ A +F +L + V W + V NDF
Sbjct: 380 PVILGNALVVMYSRCGNVQTAFKLFDRLPEKDIVSWNTMVTAF--------VQNDFDLEG 431
Query: 208 -----EMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVD 262
+M + +S T ++VL A D G+Q H +V+ G+E DE ++ L+D
Sbjct: 432 LLLVYQMQKSCFAADSVTLTAVLSAASNTGDL-QIGKQAHGYLVRRGIE-DEGLESYLID 489
Query: 263 MYGKCRLLRDAERVFELIVD-KKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQE 321
MY K + A+RVF+ + K++ +WNAM+ GY ++G +A M + ++
Sbjct: 490 MYAKSGRIEIAQRVFDDYGNVKRDEVTWNAMIAGYTQSGQPEQAILTFRAMLQASLEPTS 549
Query: 322 SLINDLRIACSSI 334
+ + AC +
Sbjct: 550 VTLASVLPACDPL 562
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 115/250 (46%), Gaps = 16/250 (6%)
Query: 52 LLLMHVSCGQLDTARQLFDEMP--LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
L+ M+ G+++ A+++FD+ RD +W MI GY ++ I F M++
Sbjct: 487 LIDMYAKSGRIEIAQRVFDDYGNVKRDEVTWNAMIAGYTQSGQPEQAILTFRAMLQAS-- 544
Query: 110 HMLLVFPAWIIVCVLKAC-VCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
L + + VL AC + GKQ+H + N+ + +L++ Y K +
Sbjct: 545 ---LEPTSVTLASVLPACDPLGGGLCAGKQIHCFALRRCLDTNVFVGTALVDMYSKCGEI 601
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
A+ VF+ + +TV +T I + G + + F M + +K + TF + + AC
Sbjct: 602 STAEHVFAVMIEKSTVSYTTMISGLGQHGFGERALSLFYYMQEKGLKPDGVTFLAAISAC 661
Query: 229 ---GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDA-ERVFELIVDKK 284
G VD+ G ++ ++ G+ +C +VDM K + +A E V EL +
Sbjct: 662 NYSGLVDE----GLALYRSMETFGVAVTPQHRCCIVDMLAKAGRVEEAYEFVQELGEEGN 717
Query: 285 NIASWNAMLV 294
I+ W ++LV
Sbjct: 718 FISIWGSLLV 727
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 57/129 (44%), Gaps = 10/129 (7%)
Query: 198 HFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIG--LESDEY 255
H +++ R + + YT+S L AC G+ +HA++++ L
Sbjct: 113 HALRLYALLNHAARPAPRSDHYTYSCALTACARTRRL-RLGKSVHAHLLRRARSLPDTAV 171
Query: 256 VQCGLVDMYGKCRLLRD------AERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFL 309
++ L+++Y C R R+F+ ++ K+N SWN + Y++ G EA +
Sbjct: 172 LRNSLLNLYASCMRYRGDGGVDVVRRLFD-VMPKRNAVSWNTLFGWYVKTGRPQEALELF 230
Query: 310 YLMKASGIQ 318
M GI+
Sbjct: 231 ARMLEDGIK 239
>gi|225445374|ref|XP_002281645.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740,
chloroplastic-like [Vitis vinifera]
Length = 858
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 83/265 (31%), Positives = 133/265 (50%), Gaps = 9/265 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+ L+ M+ CG L+ AR++FD M ++ +W MIVGYV QE I +F +M R +G
Sbjct: 221 SSLVDMYGKCGVLEDARKVFDSMVEKNVVTWNSMIVGYVQNGLNQEAIDVFYDM--RVEG 278
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMEL-GKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+ P + V + ++ + GKQ H + + L S+INFY K +
Sbjct: 279 ----IEPTRVTVASFLSASANLDALIEGKQGHAIAILNSLDLDNILGSSIINFYSKVGLI 334
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
EDA+ VFS++ + V W I + + + N M E ++ +S T SS+L A
Sbjct: 335 EDAELVFSRMLEKDVVTWNLLISSYVQHHQVGKALNMCHLMRSENLRFDSVTLSSILSAS 394
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
V + G++ H ++ LESD V ++DMY KC + DA +VF+ + +++
Sbjct: 395 A-VTSNIKLGKEGHCYCIRRNLESDVVVANSIIDMYAKCERIDDARKVFDSTTE-RDLVL 452
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMK 313
WN +L Y + GL EA K Y M+
Sbjct: 453 WNTLLAAYAQVGLSGEALKLFYQMQ 477
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 115/216 (53%), Gaps = 4/216 (1%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGS--SRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
+L+ CV + G+Q+H + K G ++N + L+ FY K E A +F +L+
Sbjct: 85 LLQGCVYERALHTGQQIHARILKNGDFFAKNEYVETKLVVFYAKCDFPEVAVRLFHRLRV 144
Query: 181 HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQ 240
N W A + CR G F EM + +++ +VLKACG + G G+
Sbjct: 145 RNVFSWAAIVGLQCRMGFSEDALLGFIEMQENGVFPDNFVLPNVLKACGSLQLIG-LGKG 203
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
+H ++K+G + +V LVDMYGKC +L DA +VF+ +V+ KN+ +WN+M+VGY++NG
Sbjct: 204 VHGYVLKMGFGACVFVSSSLVDMYGKCGVLEDARKVFDSMVE-KNVVTWNSMIVGYVQNG 262
Query: 301 LYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
L EA Y M+ GI+ + A +++ A
Sbjct: 263 LNQEAIDVFYDMRVEGIEPTRVTVASFLSASANLDA 298
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 86/338 (25%), Positives = 160/338 (47%), Gaps = 18/338 (5%)
Query: 8 ITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLN-----RLLLMHVSCGQL 62
I ++Y L++ C +++ A I R+ N +L++ + C
Sbjct: 77 IGPEIYGELLQGCVYER----ALHTGQQIHARILKNGDFFAKNEYVETKLVVFYAKCDFP 132
Query: 63 DTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIV 121
+ A +LF + +R+ SWA ++ + ++ + F EM + VFP +++
Sbjct: 133 EVAVRLFHRLRVRNVFSWAAIVGLQCRMGFSEDALLGFIEMQENG------VFPDNFVLP 186
Query: 122 CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH 181
VLKAC + LGK VHG + K+G + ++ SL++ YGK LEDA VF +
Sbjct: 187 NVLKACGSLQLIGLGKGVHGYVLKMGFGACVFVSSSLVDMYGKCGVLEDARKVFDSMVEK 246
Query: 182 NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQM 241
N V W + IV + G + + F +M E I+ T +S L A +D G+Q
Sbjct: 247 NVVTWNSMIVGYVQNGLNQEAIDVFYDMRVEGIEPTRVTVASFLSASANLDALIE-GKQG 305
Query: 242 HANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGL 301
HA + L+ D + +++ Y K L+ DAE VF +++ K++ +WN ++ Y+++
Sbjct: 306 HAIAILNSLDLDNILGSSIINFYSKVGLIEDAELVFSRMLE-KDVVTWNLLISSYVQHHQ 364
Query: 302 YVEATKFLYLMKASGIQIQESLINDLRIACSSISASKI 339
+A +LM++ ++ ++ + A + S K+
Sbjct: 365 VGKALNMCHLMRSENLRFDSVTLSSILSASAVTSNIKL 402
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 70/298 (23%), Positives = 119/298 (39%), Gaps = 46/298 (15%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R N++ ++ N ++ M+ C ++D AR++FD RD W ++ Y V E +
Sbjct: 412 RRNLESDVVVANSIIDMYAKCERIDDARKVFDSTTERDLVLWNTLLAAYAQVGLSGEALK 471
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
LF +M F IS +
Sbjct: 472 LFYQMQ---------------------------------------FDSVPPNVISWNSVI 492
Query: 159 INFYGKFRCLEDADFVFSQLK----RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERI 214
+ F + E D +FSQ++ + N + WT I + G ++ F++M I
Sbjct: 493 LGFLRNGQVNEAKD-MFSQMQSLGFQPNLITWTTLISGLAQSGFGYEAILFFQKMQEAGI 551
Query: 215 KKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAE 274
+ + + +SVL AC + GR +H I + V LVDMY KC + +A+
Sbjct: 552 RPSIASITSVLLACTDIPSLW-YGRAIHGFITRHEFCLSVPVATSLVDMYAKCGSIDEAK 610
Query: 275 RVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+VF ++ K + +NAM+ Y +G VEA ++ GI+ + ACS
Sbjct: 611 KVFHMM-SSKELPIYNAMISAYALHGQAVEALALFKHLQKEGIEPDSITFTSILSACS 667
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 94/215 (43%), Gaps = 23/215 (10%)
Query: 41 NIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFN----SWAVMIVGYVDVADYQEC 96
++ P ++ N ++L + GQ++ A+ +F +M F +W +I G E
Sbjct: 480 SVPPNVISWNSVILGFLRNGQVNEAKDMFSQMQSLGFQPNLITWTTLISGLAQSGFGYEA 539
Query: 97 ITLFAEMMKRKKGHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLT 155
I F +M + + P+ I VL AC ++ G+ +HG + + ++ +
Sbjct: 540 ILFFQKMQEAG------IRPSIASITSVLLACTDIPSLWYGRAIHGFITRHEFCLSVPVA 593
Query: 156 GSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIK 215
SL++ Y K +++A VF + ++ A I G + FK + +E I+
Sbjct: 594 TSLVDMYAKCGSIDEAKKVFHMMSSKELPIYNAMISAYALHGQAVEALALFKHLQKEGIE 653
Query: 216 KNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGL 250
+S TF+S+L AC HA +V GL
Sbjct: 654 PDSITFTSILSACS------------HAGLVNEGL 676
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/279 (19%), Positives = 114/279 (40%), Gaps = 42/279 (15%)
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI 119
G ++ A +F M +D +W ++I YV + + + +M+ + L F +
Sbjct: 332 GLIEDAELVFSRMLEKDVVTWNLLISSYVQHHQVGKALNM-CHLMRSEN----LRFDSVT 386
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
+ +L A T N++LGK+ H + ++ + S+I+ Y K ++DA VF
Sbjct: 387 LSSILSASAVTSNIKLGKEGHCYCIRRNLESDVVVANSIIDMYAKCERIDDARKVFDSTT 446
Query: 180 RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDG--NC 237
+ V+W + + G + F +M + + N +++SV+ G +G N
Sbjct: 447 ERDLVLWNTLLAAYAQVGLSGEALKLFYQMQFDSVPPNVISWNSVIL---GFLRNGQVNE 503
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYI 297
+ M + + +G + N+ +W ++ G
Sbjct: 504 AKDMFSQMQSLGFQ--------------------------------PNLITWTTLISGLA 531
Query: 298 RNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
++G EA F M+ +GI+ + I + +AC+ I +
Sbjct: 532 QSGFGYEAILFFQKMQEAGIRPSIASITSVLLACTDIPS 570
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 68/143 (47%), Gaps = 4/143 (2%)
Query: 194 CREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIG--LE 251
C++GH + + EM E + + +L+ C + + G+Q+HA I+K G
Sbjct: 55 CKDGHLQESVHLLSEMEFEDFQIGPEIYGELLQGC-VYERALHTGQQIHARILKNGDFFA 113
Query: 252 SDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYL 311
+EYV+ LV Y KC A R+F + +N+ SW A++ R G +A
Sbjct: 114 KNEYVETKLVVFYAKCDFPEVAVRLFHRL-RVRNVFSWAAIVGLQCRMGFSEDALLGFIE 172
Query: 312 MKASGIQIQESLINDLRIACSSI 334
M+ +G+ ++ ++ AC S+
Sbjct: 173 MQENGVFPDNFVLPNVLKACGSL 195
>gi|125526790|gb|EAY74904.1| hypothetical protein OsI_02796 [Oryza sativa Indica Group]
Length = 616
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 132/269 (49%), Gaps = 9/269 (3%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
++ L+ + CG++D AR++FD MP R SW M++GY+ E LF EM R +
Sbjct: 216 MSSLVDFYGKCGEVDDAREVFDVMPERTVVSWNSMLMGYIHNGRIDEAADLFYEM--RVE 273
Query: 109 GHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
G V P + ++ L A ++ G+Q H + G ++ L S+INFY K
Sbjct: 274 G----VLPTRVSVLSFLSASADLEVLDGGRQGHAVAVSSGLEMDLILGSSMINFYCKVGL 329
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
+E A+ +F Q+ + V W I ++G + M +K + T +SV+ A
Sbjct: 330 VEAAEVIFEQMVERDIVTWNLMISGYLQDGQTDKALTTCHRMLESGLKFDCVTLASVIMA 389
Query: 228 CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
C G HA V+ LESD+ V C L+++Y + RVF+ I +++IA
Sbjct: 390 CVK-SYRMEVGGAAHAYAVRNNLESDKTVFCSLIELYSSSGRIEQMRRVFDSI-RRRDIA 447
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASG 316
+W AM+ Y +G+ EA K LY M+ G
Sbjct: 448 TWKAMICAYADHGMGSEALKLLYQMQLEG 476
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 138/285 (48%), Gaps = 13/285 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+L + + CG L A + F +P ++ +WA +I + + + + +A M++
Sbjct: 116 TKLAVFYARCGALGDAERAFSALPAKNAFAWAAVIGMWSRAGLHGKALDGYAAMLEAG-- 173
Query: 110 HMLLVFPA--WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
PA +++ VLKAC + G+ VHG +K G + + SL++FYGK
Sbjct: 174 -----VPADNFVVPNVLKACAGLGLLAPGRAVHGYAWKPGLGNCVYVMSSLVDFYGKCGE 228
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
++DA VF + V W + ++ G + + F EM E + + S L A
Sbjct: 229 VDDAREVFDVMPERTVVSWNSMLMGYIHNGRIDEAADLFYEMRVEGVLPTRVSVLSFLSA 288
Query: 228 CGGVDD-DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
++ DG GRQ HA V GLE D + +++ Y K L+ AE +FE +V+ ++I
Sbjct: 289 SADLEVLDG--GRQGHAVAVSSGLEMDLILGSSMINFYCKVGLVEAAEVIFEQMVE-RDI 345
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
+WN M+ GY+++G +A + M SG++ + + +AC
Sbjct: 346 VTWNLMISGYLQDGQTDKALTTCHRMLESGLKFDCVTLASVIMAC 390
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 96/197 (48%), Gaps = 4/197 (2%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSS--RNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
+L+ CV + G+QVH K G R+ + L FY + L DA+ FS L
Sbjct: 81 LLQCCVAAGCLRAGRQVHAAAVKRGPRYCRHAYIGTKLAVFYARCGALGDAERAFSALPA 140
Query: 181 HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQ 240
N W A I R G + + + M + +++ +VLKAC G+ GR
Sbjct: 141 KNAFAWAAVIGMWSRAGLHGKALDGYAAMLEAGVPADNFVVPNVLKACAGLGLLAP-GRA 199
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
+H K GL + YV LVD YGKC + DA VF+ ++ ++ + SWN+ML+GYI NG
Sbjct: 200 VHGYAWKPGLGNCVYVMSSLVDFYGKCGEVDDAREVFD-VMPERTVVSWNSMLMGYIHNG 258
Query: 301 LYVEATKFLYLMKASGI 317
EA Y M+ G+
Sbjct: 259 RIDEAADLFYEMRVEGV 275
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/262 (20%), Positives = 101/262 (38%), Gaps = 44/262 (16%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L+ + ++ + G ++ A +F++M RD +W +MI GY+ + +T M++
Sbjct: 314 LILGSSMINFYCKVGLVEAAEVIFEQMVERDIVTWNLMISGYLQDGQTDKALTTCHRMLE 373
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
L F + V+ ACV + ME+G H + + ++ SLI Y
Sbjct: 374 SG-----LKFDCVTLASVIMACVKSYRMEVGGAAHAYAVRNNLESDKTVFCSLIELYSSS 428
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
+E VF ++R + W A I G + +M E + + SVL
Sbjct: 429 GRIEQMRRVFDSIRRRDIATWKAMICAYADHGMGSEALKLLYQMQLEGTSPTAACWDSVL 488
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD--- 282
A +++ G +D DA F ++
Sbjct: 489 SA---------------------------FIRNGQLD---------DALSTFYEMLQTST 512
Query: 283 KKNIASWNAMLVGYIRNGLYVE 304
+ N+ +W+ ++ G RNG++ E
Sbjct: 513 RPNLRTWSLLISGLSRNGMHPE 534
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 3/99 (3%)
Query: 238 GRQMHANIVKIGLE--SDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
GRQ+HA VK G Y+ L Y +C L DAER F + KN +W A++
Sbjct: 94 GRQVHAAAVKRGPRYCRHAYIGTKLAVFYARCGALGDAERAFSAL-PAKNAFAWAAVIGM 152
Query: 296 YIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
+ R GL+ +A M +G+ ++ ++ AC+ +
Sbjct: 153 WSRAGLHGKALDGYAAMLEAGVPADNFVVPNVLKACAGL 191
Score = 42.4 bits (98), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 64/152 (42%), Gaps = 12/152 (7%)
Query: 20 CTFQKDSAG--AFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM----P 73
C + G A +LL ++ PT + +L + GQLD A F EM
Sbjct: 454 CAYADHGMGSEALKLLYQMQLE-GTSPTAACWDSVLSAFIRNGQLDDALSTFYEMLQTST 512
Query: 74 LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNM 133
+ +W+++I G + E + L +M + + +F A L A ++
Sbjct: 513 RPNLRTWSLLISGLSRNGMHPEVMNLCCKMQEVEPAPSPTIFSA-----ALLAVKSAASV 567
Query: 134 ELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
+ GK +H + K G + S+ SL+N YG F
Sbjct: 568 QYGKAMHACIVKKGLLLSKSVVQSLLNMYGSF 599
>gi|86439692|emb|CAJ19324.1| selenium binding protein [Triticum aestivum]
Length = 624
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 92/335 (27%), Positives = 150/335 (44%), Gaps = 14/335 (4%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCG 60
+D L T +Y I C K+ A ++ H+ N L+ M+ C
Sbjct: 42 LDAGELAPTPRVYRSFITACAQSKNLEDARKIHAHLGSS-RFAGDAFLDNSLIHMYCKCR 100
Query: 61 QLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWII 120
+ AR +FD+M +D SW +I GY E I L M+K + F
Sbjct: 101 SVLDARNVFDQMRRKDMVSWTSLIAGYAQNDMPVEAIGLLPGMLKGRFKPNGFTF----- 155
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
+LKA + G+Q+H L K G ++ + +L++ Y + ++ A VF +L
Sbjct: 156 ASLLKAAGAYADSGTGRQIHALAVKCGWHEDVYVGSALLDMYARCGKMDMATAVFDKLDS 215
Query: 181 HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC---GGVDDDGNC 237
N V W A I R+G F EM R + +T+SSV + G ++
Sbjct: 216 KNGVSWNALISGFARKGDGESALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQ---- 271
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYI 297
G+ +HA+++K + +V L+DMY K + DA +VF+ VD K++ +WN+ML +
Sbjct: 272 GKWVHAHVIKSRQKLTAFVGNTLLDMYAKSGSMIDARKVFDR-VDNKDLVTWNSMLTAFA 330
Query: 298 RNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+ GL EA M+ SG+ + + + ACS
Sbjct: 331 QYGLGKEAVSHFEEMRKSGVYLNQITFLCILTACS 365
>gi|255566993|ref|XP_002524479.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536267|gb|EEF37919.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 576
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 85/259 (32%), Positives = 128/259 (49%), Gaps = 17/259 (6%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQ-ECITLFAEMMKR-- 106
N L+ M+ G L A ++F+EM D SW +I GY Y E I++F EM++R
Sbjct: 215 NALITMYSRWGCLLEAGRVFEEMQTTDLVSWNAIISGYTQAGIYGLEAISIFIEMVRRGI 274
Query: 107 KKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166
K H+ + AC N+E+G+QVHGL K G +++S+ LI+ Y K
Sbjct: 275 KLDHVSFT-------SAISACGHERNLEVGRQVHGLSIKRGYGKHVSVGNVLISTYSKCE 327
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
+EDA VF + N V WT I + E + FN EM + + N TF ++
Sbjct: 328 IIEDAKLVFQNMLERNVVSWTTMI--SIDEENAVSFFN---EMRYDEVDPNDVTFVGLIH 382
Query: 227 ACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
A + D G+ +H +K G + VQ + MY K D+ +VFE + + + I
Sbjct: 383 AI-TIGDLVESGKTVHGFCIKSGFSLEPSVQNSFITMYAKFGSAEDSMKVFEEL-NYREI 440
Query: 287 ASWNAMLVGYIRNGLYVEA 305
+WNA++ GY +NGL EA
Sbjct: 441 ITWNALISGYAQNGLSQEA 459
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 93/218 (42%), Gaps = 12/218 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ + C ++ A+ +F M R+ SW MI D + ++ F EM +
Sbjct: 317 NVLISTYSKCEIIEDAKLVFQNMLERNVVSWTTMIS-----IDEENAVSFFNEMRYDEVD 371
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ F I + V E GK VHG K G S S+ S I Y KF E
Sbjct: 372 PNDVTFVGLIHAITIGDLV-----ESGKTVHGFCIKSGFSLEPSVQNSFITMYAKFGSAE 426
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
D+ VF +L + W A I + G + F E K N YTF SVL A G
Sbjct: 427 DSMKVFEELNYREIITWNALISGYAQNGLSQEAIITFFSALAES-KPNQYTFGSVLSAIG 485
Query: 230 GVDDDG-NCGRQMHANIVKIGLESDEYVQCGLVDMYGK 266
+D G+ HA I+K+G SD V L+DMY K
Sbjct: 486 AAEDISLKHGQMCHAQIMKLGFNSDPVVSSALLDMYAK 523
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/245 (27%), Positives = 115/245 (46%), Gaps = 11/245 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ GQ A +F+ + D SW ++ G+ +E + +M
Sbjct: 117 NSLMNMYCKSGQFTHALCIFETLNDPDIVSWNTVLSGF---QRSEEALNFALKMNSNG-- 171
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+VF A VL C G Q+H + K+G + + +LI Y ++ CL
Sbjct: 172 ---VVFDAVTYTTVLAFCSRIEEFLFGLQLHSCILKVGLDCEVFVGNALITMYSRWGCLL 228
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFH-QVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+A VF +++ + V W A I + G + + + F EM R IK + +F+S + AC
Sbjct: 229 EAGRVFEEMQTTDLVSWNAIISGYTQAGIYGLEAISIFIEMVRRGIKLDHVSFTSAISAC 288
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
G + + GRQ+H +K G V L+ Y KC ++ DA+ VF+ +++ +N+ S
Sbjct: 289 GH-ERNLEVGRQVHGLSIKRGYGKHVSVGNVLISTYSKCEIIEDAKLVFQNMLE-RNVVS 346
Query: 289 WNAML 293
W M+
Sbjct: 347 WTTMI 351
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 101/213 (47%), Gaps = 8/213 (3%)
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
I LK+C C + LG Q+HG G I++ SL+N Y K A +F L
Sbjct: 83 IALALKSC-CGDKL-LGSQIHGFAITSGLYSFITVPNSLMNMYCKSGQFTHALCIFETLN 140
Query: 180 RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGR 239
+ V W + R + N +M + ++ T+++VL C + ++ G
Sbjct: 141 DPDIVSWNTVLSGFQRS---EEALNFALKMNSNGVVFDAVTYTTVLAFCSRI-EEFLFGL 196
Query: 240 QMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRN 299
Q+H+ I+K+GL+ + +V L+ MY + L +A RVFE + ++ SWNA++ GY +
Sbjct: 197 QLHSCILKVGLDCEVFVGNALITMYSRWGCLLEAGRVFEEM-QTTDLVSWNAIISGYTQA 255
Query: 300 GLY-VEATKFLYLMKASGIQIQESLINDLRIAC 331
G+Y +EA M GI++ AC
Sbjct: 256 GIYGLEAISIFIEMVRRGIKLDHVSFTSAISAC 288
>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
Length = 799
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 77/266 (28%), Positives = 136/266 (51%), Gaps = 10/266 (3%)
Query: 35 HIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNS--WAVMIVGYVDVAD 92
H N+ + +L+ ++++C +L AR +FD+MP R N W ++I Y
Sbjct: 40 HRTHETNLTNFDVPFEKLVDLYIACSELKIARHVFDKMPHRPKNVVLWNLLIRAYAWNGP 99
Query: 93 YQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNI 152
Y+E I L+ +M+ FP VLKAC G+++H + +L N+
Sbjct: 100 YEEAIDLYYKMLGYGITPNRFTFPF-----VLKACSALKEASEGREIHCDIKRLRLESNV 154
Query: 153 SLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN-NCREGHFHQVFNDFKEMGR 211
++ +L++FY K CL+DA VF ++ + + V W + I + EG + +V +M +
Sbjct: 155 YVSTALVDFYAKCGCLDDAKEVFDKMHKRDVVAWNSMISGFSLHEGSYDEVARLLVQM-Q 213
Query: 212 ERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLR 271
+ NS T VL A V+ + G+++H V+ G D V G++D+YGKC+ +
Sbjct: 214 NDVSPNSSTIVGVLPAVAQVNSLRH-GKEIHGFCVRRGFVGDVVVGTGILDVYGKCQCID 272
Query: 272 DAERVFELIVDKKNIASWNAMLVGYI 297
A R+F+++ KN +W+AM+ Y+
Sbjct: 273 YARRIFDMMGIVKNEVTWSAMVGAYV 298
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 88/341 (25%), Positives = 165/341 (48%), Gaps = 26/341 (7%)
Query: 8 ITTDMYTC--LIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTA 65
IT + +T ++K C+ K+++ E+ I KR+ ++ + L+ + CG LD A
Sbjct: 115 ITPNRFTFPFVLKACSALKEASEGREIHCDI-KRLRLESNVYVSTALVDFYAKCGCLDDA 173
Query: 66 RQLFDEMPLRDFNSWAVMIVGY-VDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCV 123
+++FD+M RD +W MI G+ + Y E L +M V P + IV V
Sbjct: 174 KEVFDKMHKRDVVAWNSMISGFSLHEGSYDEVARLLVQMQND-------VSPNSSTIVGV 226
Query: 124 LKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK-RHN 182
L A ++ GK++HG + G ++ + +++ YGK +C++ A +F + N
Sbjct: 227 LPAVAQVNSLRHGKEIHGFCVRRGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKN 286
Query: 183 TVVWTAKI-----VNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDD--DG 235
V W+A + + RE ++F + + I ++ T ++V++ C + D G
Sbjct: 287 EVTWSAMVGAYVVCDFMREAL--ELFCQLLMLKDDVIVLSAVTLATVIRVCANLTDLSTG 344
Query: 236 NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
C +H +K G D V L+ MY KC ++ A R F + D ++ S+ A++ G
Sbjct: 345 TC---LHCYAIKSGFVLDLMVGNTLLSMYAKCGIINGAMRFFNEM-DLRDAVSFTAIISG 400
Query: 296 YIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
Y++NG E + M+ SGI +++ + + AC+ ++
Sbjct: 401 YVQNGNSEEGLRMFLEMQLSGINPEKATLASVLPACAHLAG 441
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 74/284 (26%), Positives = 136/284 (47%), Gaps = 9/284 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPL-RDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGH 110
+L ++ C +D AR++FD M + ++ +W+ M+ YV +E + LF +++ K
Sbjct: 261 ILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGAYVVCDFMREALELFCQLLMLKDD- 319
Query: 111 MLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
++V A + V++ C ++ G +H K G ++ + +L++ Y K +
Sbjct: 320 -VIVLSAVTLATVIRVCANLTDLSTGTCLHCYAIKSGFVLDLMVGNTLLSMYAKCGIING 378
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
A F+++ + V +TA I + G+ + F EM I T +SVL AC
Sbjct: 379 AMRFFNEMDLRDAVSFTAIISGYVQNGNSEEGLRMFLEMQLSGINPEKATLASVLPACAH 438
Query: 231 VD--DDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
+ G+C H + G +D + L+DMY KC + A +VF+ + K+ I S
Sbjct: 439 LAGLHYGSCS---HCYAIICGFTADTMICNALIDMYAKCGKIDTARKVFDRM-HKRGIVS 494
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
WN M++ Y +G+ +EA M++ G++ + L ACS
Sbjct: 495 WNTMIIAYGIHGIGLEALLLFDNMQSEGLKPDDVTFICLISACS 538
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/258 (24%), Positives = 111/258 (43%), Gaps = 25/258 (9%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEM-- 103
L+ N LL M+ CG ++ A + F+EM LRD S+ +I GYV + +E + +F EM
Sbjct: 360 LMVGNTLLSMYAKCGIINGAMRFFNEMDLRDAVSFTAIISGYVQNGNSEEGLRMFLEMQL 419
Query: 104 --MKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINF 161
+ +K + V P AC + G H G + + + +LI+
Sbjct: 420 SGINPEKATLASVLP---------ACAHLAGLHYGSCSHCYAIICGFTADTMICNALIDM 470
Query: 162 YGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTF 221
Y K ++ A VF ++ + V W I+ G + F M E +K + TF
Sbjct: 471 YAKCGKIDTARKVFDRMHKRGIVSWNTMIIAYGIHGIGLEALLLFDNMQSEGLKPDDVTF 530
Query: 222 SSVLKAC--GGVDDDG----NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAER 275
++ AC G+ +G N Q I ++ E+ C +VD+ + L ++
Sbjct: 531 ICLISACSHSGLVAEGKYWFNAMTQDFGIIPRM-----EHYAC-MVDLLSRAGLFKEVHS 584
Query: 276 VFELIVDKKNIASWNAML 293
E + + ++ W A+L
Sbjct: 585 FIEKMPLEPDVRVWGALL 602
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 260 LVDMYGKCRLLRDAERVFELIVDK-KNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
LVD+Y C L+ A VF+ + + KN+ WN ++ Y NG Y EA Y M GI
Sbjct: 57 LVDLYIACSELKIARHVFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGIT 116
Query: 319 IQESLINDLRIACSSISAS 337
+ ACS++ +
Sbjct: 117 PNRFTFPFVLKACSALKEA 135
>gi|224069617|ref|XP_002303012.1| predicted protein [Populus trichocarpa]
gi|222844738|gb|EEE82285.1| predicted protein [Populus trichocarpa]
Length = 815
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 78/257 (30%), Positives = 129/257 (50%), Gaps = 8/257 (3%)
Query: 62 LDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIV 121
++ R+LF+EMP D S+ V+I Y V +E I LF E+ FP
Sbjct: 292 VNEVRKLFNEMPELDGVSYNVIITAYAWVGKVKESIDLFQELQFTTFDRKNFPFPT---- 347
Query: 122 CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH 181
+L ++++++G+Q+H + + + ++ SL++ Y K E+AD +F +L
Sbjct: 348 -MLSIAASSLDLQMGRQLHAQVVVSMADPDFRVSNSLVDMYAKCGKFEEADRIFLRLSSR 406
Query: 182 NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQM 241
+TV WTA I N + G F EM R + + TF+ VLKA + G+Q+
Sbjct: 407 STVPWTAMISANVQRGLHENGLKLFYEMRRANVSADQATFACVLKASANLASIL-LGKQL 465
Query: 242 HANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGL 301
H+ +++ G + Y C L+DMY C ++DA + FE + ++N+ +WNA+L Y +NG
Sbjct: 466 HSCVIRSGF-MNVYSGCALLDMYANCASIKDAIKTFEEM-SERNVVTWNALLSAYAQNGD 523
Query: 302 YVEATKFLYLMKASGIQ 318
K M SG Q
Sbjct: 524 GKGTLKSFEEMIMSGYQ 540
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 77/273 (28%), Positives = 129/273 (47%), Gaps = 7/273 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N LL + G LD+AR+LF EM D S+ VMI GY + +E I LF EM
Sbjct: 179 NTLLDSYFKTGGLDSARRLFLEMCGWDSVSFNVMITGYANNGLNEEAIELFVEMQNLGFK 238
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
F A V+ A V + G+Q+HG + K RN+ + + ++FY K C+
Sbjct: 239 PSDFTFAA-----VISASVGLDDTAFGQQIHGFVVKTSFIRNVFVGNAFLDFYSKHDCVN 293
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
+ +F+++ + V + I G + + F+E+ + ++ F ++L +
Sbjct: 294 EVRKLFNEMPELDGVSYNVIITAYAWVGKVKESIDLFQELQFTTFDRKNFPFPTML-SIA 352
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
D GRQ+HA +V + D V LVDMY KC +A+R+F L + ++ W
Sbjct: 353 ASSLDLQMGRQLHAQVVVSMADPDFRVSNSLVDMYAKCGKFEEADRIF-LRLSSRSTVPW 411
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQES 322
AM+ ++ GL+ K Y M+ + + ++
Sbjct: 412 TAMISANVQRGLHENGLKLFYEMRRANVSADQA 444
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/294 (23%), Positives = 134/294 (45%), Gaps = 21/294 (7%)
Query: 7 PITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTAR 66
PIT+ + +IK+ + + A +LL+ + R + ++ ++ +V G L AR
Sbjct: 41 PITS-RFNFMIKDLSERGQLCQARQLLDQMPNRNSFS-----IDIIISGYVKSGNLTVAR 94
Query: 67 QLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWII-VCVLK 125
++FD+ R +W MI Y + + LFAEM + P ++ + +L
Sbjct: 95 RIFDDTDERTVVAWTTMIGAYSKSNRFGDAFKLFAEMHRSGSQ------PDYVTYITLLT 148
Query: 126 ACVCTMNMELGK---QVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
C ++E+ K Q H + KLG N + +L++ Y K L+ A +F ++ +
Sbjct: 149 GC---NDLEVAKELYQAHAQIVKLGHHLNHRVCNTLLDSYFKTGGLDSARRLFLEMCGWD 205
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
+V + I G + F EM K + +TF++V+ A G+DD G+Q+H
Sbjct: 206 SVSFNVMITGYANNGLNEEAIELFVEMQNLGFKPSDFTFAAVISASVGLDDTA-FGQQIH 264
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGY 296
+VK + +V +D Y K + + ++F + + + S+N ++ Y
Sbjct: 265 GFVVKTSFIRNVFVGNAFLDFYSKHDCVNEVRKLFNEMPELDGV-SYNVIITAY 317
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/287 (23%), Positives = 114/287 (39%), Gaps = 39/287 (13%)
Query: 44 PTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEM 103
P N L+ M+ CG+ + A ++F + R W MI V ++ + LF EM
Sbjct: 375 PDFRVSNSLVDMYAKCGKFEEADRIFLRLSSRSTVPWTAMISANVQRGLHENGLKLFYEM 434
Query: 104 MKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYG 163
+ F CVLKA ++ LGKQ+H + + G N+ +L++ Y
Sbjct: 435 RRANVSADQATF-----ACVLKASANLASILLGKQLHSCVIRSG-FMNVYSGCALLDMYA 488
Query: 164 KFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSS 223
++DA F ++ N V W A + + G F+EM + +S +F
Sbjct: 489 NCASIKDAIKTFEEMSERNVVTWNALLSAYAQNGDGKGTLKSFEEMIMSGYQPDSVSFLC 548
Query: 224 VLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
+L AC H +V+ GL + D V+ L +
Sbjct: 549 ILTACS------------HCRLVEEGL-----------------KYFNDMSGVYNLAPKR 579
Query: 284 KNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQI-QESLINDLRI 329
++ + AM+ R+G + EA K + M +I S++N RI
Sbjct: 580 EH---YTAMVDALCRSGRFDEAEKLMGQMPFEPDEIVWTSVLNSCRI 623
>gi|297833250|ref|XP_002884507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330347|gb|EFH60766.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 676
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 86/284 (30%), Positives = 138/284 (48%), Gaps = 10/284 (3%)
Query: 45 TLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMM 104
L+ N LL ++V CG+L A +LFDEMP+RD S ++ G++ + + L M+
Sbjct: 89 ALVVWNSLLSLYVKCGKLGDALKLFDEMPVRDVISQNIVFYGFLRNRETESGFVLLKRML 148
Query: 105 KRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
F + VL C + K +H L G + IS+ LI Y K
Sbjct: 149 GSGG------FDQATLTIVLSVCDTPEFCLVTKMIHALAILSGYDKEISVGNKLITSYFK 202
Query: 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQ-VFNDFKEMGRERIKKNSYTFSS 223
C +VFS++ N + WTA +++ E H+ F M R + NS T+ S
Sbjct: 203 CGCSVSGRWVFSEMAHRNVITWTA-VISGLIENELHEDGLRLFCLMRRGLVHPNSVTYLS 261
Query: 224 VLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
L AC G G+Q+HA + K G+ES+ ++ L+DMY KC + DA ++FE +
Sbjct: 262 ALAACSGSQMIVE-GQQIHALLWKFGIESELCIESALMDMYSKCGSIEDAWKIFESSQEV 320
Query: 284 KNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDL 327
+ S +LVG +NG EA +F M +G++I ++++ +
Sbjct: 321 DEV-SMTVILVGLAQNGSEEEAIQFFIRMLQAGVEIDANVVSAI 363
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 76/286 (26%), Positives = 141/286 (49%), Gaps = 9/286 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N+L+ + CG + R +F EM R+ +W +I G ++ +++ + LF +M+R
Sbjct: 194 NKLITSYFKCGCSVSGRWVFSEMAHRNVITWTAVISGLIENELHEDGLRLFC-LMRRG-- 250
Query: 110 HMLLVFPAWII-VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
LV P + + L AC + + G+Q+H LL+K G + + +L++ Y K +
Sbjct: 251 ---LVHPNSVTYLSALAACSGSQMIVEGQQIHALLWKFGIESELCIESALMDMYSKCGSI 307
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
EDA +F + + V T +V + G + F M + ++ ++ S++L
Sbjct: 308 EDAWKIFESSQEVDEVSMTVILVGLAQNGSEEEAIQFFIRMLQAGVEIDANVVSAIL-GV 366
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
VD+ G+Q+H+ ++K + +V GL++MY KC L D++ VF + K+N S
Sbjct: 367 SFVDNSLGLGKQLHSLVIKRKFCGNTFVNNGLINMYSKCGDLTDSQTVFRRM-PKRNYVS 425
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
WN+M+ + R+G + A K M ++ + L ACS +
Sbjct: 426 WNSMIAAFARHGHGLAALKLYEEMTTLEVKPTDVTFLSLLHACSHV 471
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 121/259 (46%), Gaps = 13/259 (5%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
+ I+ L + L+ M+ CG ++ A ++F+ D S V++VG +E I
Sbjct: 284 KFGIESELCIESALMDMYSKCGSIEDAWKIFESSQEVDEVSMTVILVGLAQNGSEEEAIQ 343
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
F M++ + A ++ +L ++ LGKQ+H L+ K N + L
Sbjct: 344 FFIRMLQAG-----VEIDANVVSAILGVSFVDNSLGLGKQLHSLVIKRKFCGNTFVNNGL 398
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
IN Y K L D+ VF ++ + N V W + I R GH ++EM +K
Sbjct: 399 INMYSKCGDLTDSQTVFRRMPKRNYVSWNSMIAAFARHGHGLAALKLYEEMTTLEVKPTD 458
Query: 219 YTFSSVLKACG--GVDDDGNCGRQMHANIVKI-GLES-DEYVQCGLVDMYGKCRLLRDAE 274
TF S+L AC G+ D GR++ + ++ G++ E+ C ++DM G+ L+++A+
Sbjct: 459 VTFLSLLHACSHVGLIDK---GRELLNEMKEVHGIKPRTEHYTC-IIDMLGRAGLMKEAK 514
Query: 275 RVFELIVDKKNIASWNAML 293
+ + K + W A+L
Sbjct: 515 SFIDSLPLKPDCKIWQALL 533
>gi|302765581|ref|XP_002966211.1| hypothetical protein SELMODRAFT_85415 [Selaginella moellendorffii]
gi|300165631|gb|EFJ32238.1| hypothetical protein SELMODRAFT_85415 [Selaginella moellendorffii]
Length = 969
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 81/270 (30%), Positives = 131/270 (48%), Gaps = 10/270 (3%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
LN + M+V CG LD A Q F M RD SW VMI Y + + LF EM+
Sbjct: 253 LNLTINMYVKCGCLDGAVQTFARMKRRDVVSWTVMIGAYSQDGKFSLSLQLFREMLLEGT 312
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+ F V +L C +E G+Q+H L+ + ++ + SL+ Y + R
Sbjct: 313 APNSVTF-----VSILSGCEAPSLLEQGRQIHALVVESSLESHVVVANSLLGMYSRCRSW 367
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCRE-GHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
ED+ +F ++ ++V W+ I+ RE H ++ M E + + S VL+A
Sbjct: 368 EDSRSLFDRMSVRDSVSWSTIIMACSREDSHCRDALPLYRSMLHEGVMPKTLALSMVLEA 427
Query: 228 CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
CG + + G+ +HA++++ GLE D V LV+MY KC + +A +VF+ I ++ I
Sbjct: 428 CGSLAELKG-GKLVHAHVIESGLEGD-LVGISLVNMYAKCGTVGEARKVFDRINNRSRIL 485
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGI 317
WN+M+ Y + EA M+ G+
Sbjct: 486 -WNSMITAYQEKDPH-EALHLFREMQPEGV 513
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 92/310 (29%), Positives = 143/310 (46%), Gaps = 21/310 (6%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRV---NIKPTLLFLNRLLLMHV 57
MD +P M L+ CT GA E I+ R+ ++ + N + M+V
Sbjct: 1 MDRRGIPPDRVMIKTLLTACT----KLGALEEGKLIQDRLAGTQLELDIGVRNLTINMYV 56
Query: 58 SCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPA 117
CG LD A Q F M RD SW VMI Y + + LF EM+ + F
Sbjct: 57 KCGCLDGAVQTFARMKRRDVVSWTVMIGAYSQDGKFSLSLQLFREMLLEGTAPNSVTF-- 114
Query: 118 WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADF-VFS 176
V +L C +E G+Q+H L+ + ++ + SL+ Y + R ED+ F+
Sbjct: 115 ---VSILSGCEAPSLLEQGRQIHALVVESSLESHVVVANSLLGMYSRCRSWEDSRMQTFA 171
Query: 177 QLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGN 236
++KR + V WT I ++G F F+EM E NS TF S+L C
Sbjct: 172 RMKRRDVVSWTVMIGAYSQDGKFSLSIQLFREMLLEGTAPNSVTFVSILSGCEA-PSLLE 230
Query: 237 CGRQMHANIVKIGLESDEYVQCGL----VDMYGKCRLLRDAERVFELIVDKKNIASWNAM 292
GRQ+HA +V+ LES ++ G+ ++MY KC L A + F + ++++ SW M
Sbjct: 231 QGRQIHALVVESSLES--HLDIGVLNLTINMYVKCGCLDGAVQTFARM-KRRDVVSWTVM 287
Query: 293 LVGYIRNGLY 302
+ Y ++G +
Sbjct: 288 IGAYSQDGKF 297
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 89/302 (29%), Positives = 141/302 (46%), Gaps = 11/302 (3%)
Query: 41 NIKPTLLFLNRLLLMHVSCGQLDTAR-QLFDEMPLRDFNSWAVMIVGYVDVADYQECITL 99
+++ ++ N LL M+ C + +R Q F M RD SW VMI Y + I L
Sbjct: 141 SLESHVVVANSLLGMYSRCRSWEDSRMQTFARMKRRDVVSWTVMIGAYSQDGKFSLSIQL 200
Query: 100 FAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFK--LGSSRNISLTGS 157
F EM+ + F V +L C +E G+Q+H L+ + L S +I +
Sbjct: 201 FREMLLEGTAPNSVTF-----VSILSGCEAPSLLEQGRQIHALVVESSLESHLDIGVLNL 255
Query: 158 LINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKN 217
IN Y K CL+ A F+++KR + V WT I ++G F F+EM E N
Sbjct: 256 TINMYVKCGCLDGAVQTFARMKRRDVVSWTVMIGAYSQDGKFSLSLQLFREMLLEGTAPN 315
Query: 218 SYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVF 277
S TF S+L C GRQ+HA +V+ LES V L+ MY +CR D+ +F
Sbjct: 316 SVTFVSILSGCEA-PSLLEQGRQIHALVVESSLESHVVVANSLLGMYSRCRSWEDSRSLF 374
Query: 278 ELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYL-MKASGIQIQESLINDLRIACSSISA 336
+ + + ++ SW+ +++ R + LY M G+ + ++ + AC S++
Sbjct: 375 DRMSVRDSV-SWSTIIMACSREDSHCRDALPLYRSMLHEGVMPKTLALSMVLEACGSLAE 433
Query: 337 SK 338
K
Sbjct: 434 LK 435
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 83/293 (28%), Positives = 134/293 (45%), Gaps = 21/293 (7%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEM----MKRK 107
L M+ CG L AR +FD M RD SW MI YV D + I+L M M+
Sbjct: 558 LFNMYAKCGSLGEARGVFDSMVFRDVVSWNNMIAAYVQGRDGEGAISLCWAMQLEGMRPD 617
Query: 108 KGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
K +L AC + G+Q+H + + +I + LI Y
Sbjct: 618 KA---------TFTSLLNACSDPNRLVDGRQIHSWIAESRLENDIVMVTGLITMYANCGS 668
Query: 168 LEDA----DFVFSQLKRH--NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTF 221
L +A D +FS ++H + +WT+ I + G + + +++M +++ + TF
Sbjct: 669 LNNAREIFDNIFSNSRQHHRDLFLWTSMITAYEQHGEYRKALELYEQMHSRQVEADRVTF 728
Query: 222 SSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIV 281
SVL AC + D G+ +HA +++ GL +D V +V MYGKC +A VFE
Sbjct: 729 ISVLNACAHLSDLRQ-GQAIHARVMRRGLATDVAVANSIVFMYGKCGSFDEASIVFEK-T 786
Query: 282 DKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
K+I+ W A++ Y R+G +A ++ GI++ + ACS +
Sbjct: 787 KHKDISLWTALIASYARHGHGEQALWIFRRLRQDGIELSNLTFVAMLSACSHV 839
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 129/259 (49%), Gaps = 18/259 (6%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEM------PLRDFNSWAVMIVGYVDVADYQECITL 99
++ + L+ M+ +CG L+ AR++FD + RD W MI Y +Y++ + L
Sbjct: 653 IVMVTGLITMYANCGSLNNAREIFDNIFSNSRQHHRDLFLWTSMITAYEQHGEYRKALEL 712
Query: 100 FAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLI 159
+ +M R+ + F + VL AC ++ G+ +H + + G + ++++ S++
Sbjct: 713 YEQMHSRQVEADRVTF-----ISVLNACAHLSDLRQGQAIHARVMRRGLATDVAVANSIV 767
Query: 160 NFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSY 219
YGK ++A VF + K + +WTA I + R GH Q F+ + ++ I+ ++
Sbjct: 768 FMYGKCGSFDEASIVFEKTKHKDISLWTALIASYARHGHGEQALWIFRRLRQDGIELSNL 827
Query: 220 TFSSVLKACG--GVDDDGNCGRQMHANIVKIGLESD-EYVQCGLVDMYGKCRLLRDAERV 276
TF ++L AC G+ ++G C + A++ ++G+E + E+ C LVD+ + L AE
Sbjct: 828 TFVAMLSACSHVGLIEEG-C--EFFASMAELGIEPNMEHHSC-LVDLLARAGHLHTAEEF 883
Query: 277 FELIVDKKNIASWNAMLVG 295
+ N A+L
Sbjct: 884 LSRMPVAANTIVLTALLAA 902
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/292 (26%), Positives = 131/292 (44%), Gaps = 18/292 (6%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ CG + AR++FD + R W MI Y + D E + LF EM
Sbjct: 458 LVNMYAKCGTVGEARKVFDRINNRSRILWNSMITAYQE-KDPHEALHLFREMQPEGVSPD 516
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+ F + VL ACV ++E G+ +H + G + ++ + +L N Y K L +A
Sbjct: 517 RITF-----MTVLNACVNAADLENGRTIHTRIVDSGFAADVRVATALFNMYAKCGSLGEA 571
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
VF + + V W I + + M E ++ + TF+S+L AC
Sbjct: 572 RGVFDSMVFRDVVSWNNMIAAYVQGRDGEGAISLCWAMQLEGMRPDKATFTSLLNAC--- 628
Query: 232 DDDGNC---GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK----- 283
D N GRQ+H+ I + LE+D + GL+ MY C L +A +F+ I
Sbjct: 629 -SDPNRLVDGRQIHSWIAESRLENDIVMVTGLITMYANCGSLNNAREIFDNIFSNSRQHH 687
Query: 284 KNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
+++ W +M+ Y ++G Y +A + M + ++ + AC+ +S
Sbjct: 688 RDLFLWTSMITAYEQHGEYRKALELYEQMHSRQVEADRVTFISVLNACAHLS 739
Score = 42.4 bits (98), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 65/147 (44%), Gaps = 7/147 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N ++ M+ CG D A +F++ +D + W +I Y ++ + +F + R+ G
Sbjct: 764 NSIVFMYGKCGSFDEASIVFEKTKHKDISLWTALIASYARHGHGEQALWIFRRL--RQDG 821
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ V +L AC +E G + + +LG N+ L++ + L
Sbjct: 822 ---IELSNLTFVAMLSACSHVGLIEEGCEFFASMAELGIEPNMEHHSCLVDLLARAGHLH 878
Query: 170 DADFVFSQLK-RHNTVVWTAKIVNNCR 195
A+ S++ NT+V TA ++ CR
Sbjct: 879 TAEEFLSRMPVAANTIVLTA-LLAACR 904
>gi|297814704|ref|XP_002875235.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297321073|gb|EFH51494.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 579
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 91/291 (31%), Positives = 139/291 (47%), Gaps = 14/291 (4%)
Query: 43 KPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAE 102
+P + +N L+ M+V L+ A QLFD+MP R+ SW MI Y +Q+ + L
Sbjct: 45 QPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVL 104
Query: 103 MMKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINF 161
M++ V P + VL+AC M + +H + K G ++ + +LI+
Sbjct: 105 MLRDG------VRPNVYTYSSVLRAC---NGMSDVRMLHCGIIKEGLESDVYVRSALIDV 155
Query: 162 YGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTF 221
+ K EDA VF ++ + +VW + I + FK M R T
Sbjct: 156 FAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATL 215
Query: 222 SSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIV 281
+SVL+AC G+ G Q H +IVK + D + LVDMY KC L DA RVF +
Sbjct: 216 TSVLRACTGL-ALLELGMQAHVHIVK--YDQDLILNNALVDMYCKCGSLEDARRVFNQM- 271
Query: 282 DKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
++++ +W+ M+ G +NG EA K LMK+SG + I + ACS
Sbjct: 272 KERDVITWSTMISGLAQNGYSQEALKLFELMKSSGTKPNYITIVGVLFACS 322
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 106/213 (49%), Gaps = 5/213 (2%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
++K C+ + G + L+ G + L LIN Y KF L DA +F Q+ + N
Sbjct: 19 LIKCCLSHRAVHEGNLICRHLYFNGHQPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRN 78
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
+ WT I + + M R+ ++ N YT+SSVL+AC G+ D R +H
Sbjct: 79 VISWTTMISAYSKCKIHQKALELLVLMLRDGVRPNVYTYSSVLRACNGMSD----VRMLH 134
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
I+K GLESD YV+ L+D++ K DA VF+ +V I WN+++ G+ +N
Sbjct: 135 CGIIKEGLESDVYVRSALIDVFAKLGEPEDALSVFDEMVTGDAIV-WNSIIGGFAQNSRS 193
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
A + MK +G +++ + + AC+ ++
Sbjct: 194 DVALELFKRMKRAGFIAEQATLTSVLRACTGLA 226
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 106/236 (44%), Gaps = 11/236 (4%)
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI 119
G+ + A +FDEM D W +I G+ + + LF M ++ G +
Sbjct: 160 GEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRM--KRAG---FIAEQAT 214
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
+ VL+AC +ELG Q H + K +++ L +L++ Y K LEDA VF+Q+K
Sbjct: 215 LTSVLRACTGLALLELGMQAHVHIVKY--DQDLILNNALVDMYCKCGSLEDARRVFNQMK 272
Query: 180 RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--GGVDDDGNC 237
+ + W+ I + G+ + F+ M K N T VL AC G+ +DG
Sbjct: 273 ERDVITWSTMISGLAQNGYSQEALKLFELMKSSGTKPNYITIVGVLFACSHAGLLEDGWY 332
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
+ + I E+ C ++D+ GK L DA ++ + + + +W +L
Sbjct: 333 YFRSMKKLYGIN-PGREHYGC-MIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLL 386
>gi|302816499|ref|XP_002989928.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
gi|300142239|gb|EFJ08941.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
Length = 818
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 87/289 (30%), Positives = 140/289 (48%), Gaps = 13/289 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFN--SWAVMIVGYVDVADYQECITLFAEMMKRK 107
N L+ M+ C L AR +F+ M R N SW MI Y E + L+ M +
Sbjct: 46 NALISMYGKCDSLVDARSVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQG 105
Query: 108 KGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
G + F V VL AC ++ G+++H +F G SL +L+ Y +F
Sbjct: 106 LGTDHVTF-----VSVLGACS---SLAQGREIHNRVFYSGLDSFQSLANALVTMYARFGS 157
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
+ DA +F L+ + W A I+ + + G + FKEM + +K NS T+ +V+
Sbjct: 158 VGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEM-KCDMKPNSTTYINVISG 216
Query: 228 CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
+ GR++HA IV G +SD V L++MYGKC +A VF+ + K+++
Sbjct: 217 FSTPEVLPE-GRKIHAEIVANGFDSDLVVATALINMYGKCGSSHEAREVFDKM-KKRDMV 274
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
SWN M+ Y++NG + EA + + G + ++ + ACSS+ A
Sbjct: 275 SWNVMIGCYVQNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKA 323
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 89/326 (27%), Positives = 142/326 (43%), Gaps = 50/326 (15%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFA---- 101
L+ L+ M+ CG AR++FD+M RD SW VMI YV D+ E + L+
Sbjct: 242 LVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQNGDFHEALELYQKLDM 301
Query: 102 EMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINF 161
E KR K V +L AC + G+ VH + + G +++ +L+N
Sbjct: 302 EGFKRTKA---------TFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNM 352
Query: 162 YGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGH------FHQVFND---------- 205
Y K LE+A VF+ +K + V W+ I G+ +VF+
Sbjct: 353 YAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTICWN 412
Query: 206 ------------------FKEM-GRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIV 246
F+EM G +K ++ TF +VL+AC + + +HA I
Sbjct: 413 AMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEV-KALHAQIS 471
Query: 247 KIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEAT 306
+ LES+ V L++MY +C L +AER+F +K + SW AM+ + + G Y EA
Sbjct: 472 ESELESNVVVTNTLINMYARCGSLEEAERLF-AAAKEKTVVSWTAMVAAFSQYGRYAEAL 530
Query: 307 KFLYLMKASGIQIQESLINDLRIACS 332
M G++ + + C+
Sbjct: 531 DLFQEMDLEGVKPDDVTYTSILFVCT 556
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 127/261 (48%), Gaps = 14/261 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEM---MKR 106
N L+ M+ G + A+++F + RD SW +I+ + D+ + +F EM MK
Sbjct: 146 NALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEMKCDMKP 205
Query: 107 KKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166
+ V + VL G+++H + G ++ + +LIN YGK
Sbjct: 206 NSTTYINVISGFSTPEVLPE---------GRKIHAEIVANGFDSDLVVATALINMYGKCG 256
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
+A VF ++K+ + V W I + G FH+ ++++ E K+ TF S+L
Sbjct: 257 SSHEAREVFDKMKKRDMVSWNVMIGCYVQNGDFHEALELYQKLDMEGFKRTKATFVSILG 316
Query: 227 ACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
AC V GR +H++I++ GL+S+ V LV+MY KC L +A +VF + ++ +
Sbjct: 317 ACSSVKALAQ-GRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAV 375
Query: 287 ASWNAMLVGYIRNGLYVEATK 307
A W+ ++ Y NG +A K
Sbjct: 376 A-WSTLIGAYASNGYGKDARK 395
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 72/319 (22%), Positives = 134/319 (42%), Gaps = 35/319 (10%)
Query: 9 TTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQL 68
T + ++ C+ K A + +HI +R + + L+ M+ CG L+ AR++
Sbjct: 307 TKATFVSILGACSSVKALAQGRLVHSHILER-GLDSEVAVATALVNMYAKCGSLEEARKV 365
Query: 69 FDEMPLRDFNSWAVMIVGYV---------------------DVADYQECITLFAE----- 102
F+ M RD +W+ +I Y D + IT + +
Sbjct: 366 FNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTICWNAMITTYVQNGCAV 425
Query: 103 ----MMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
+ + G L A + VL+AC + K +H + + N+ +T +L
Sbjct: 426 AAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQISESELESNVVVTNTL 485
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
IN Y + LE+A+ +F+ K V WTA + + G + + + F+EM E +K +
Sbjct: 486 INMYARCGSLEEAERLFAAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQEMDLEGVKPDD 545
Query: 219 YTFSSVLKAC--GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERV 276
T++S+L C GG + G A + + +D + +VD+ G+ L DA+ +
Sbjct: 546 VTYTSILFVCTHGGSLEQGWRYFTDMAELHGLAPTADHFA--AMVDLLGRSGRLFDAKEL 603
Query: 277 FELIVDKKNIASWNAMLVG 295
E + + + +W L
Sbjct: 604 LESMPFEPDPVAWMTFLTA 622
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 61/125 (48%), Gaps = 2/125 (1%)
Query: 215 KKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAE 274
+ ++ TF +VL +C D GR +H I E D V L+ MYGKC L DA
Sbjct: 4 QPDNVTFLTVLCSCSSCGDVAE-GRALHERIRCSRFERDTMVGNALISMYGKCDSLVDAR 62
Query: 275 RVFE-LIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSS 333
VFE + ++N+ SWNAM+ Y +NG EA + M G+ + ACSS
Sbjct: 63 SVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSS 122
Query: 334 ISASK 338
++ +
Sbjct: 123 LAQGR 127
>gi|15231402|ref|NP_188004.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75273848|sp|Q9LRV9.1|PP228_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g13880
gi|9294611|dbj|BAB02912.1| probable selenium-binding protein [Arabidopsis thaliana]
gi|332641909|gb|AEE75430.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 748
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 92/314 (29%), Positives = 152/314 (48%), Gaps = 15/314 (4%)
Query: 31 ELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDV 90
ELL+ + + + +N L+ M+ CG+LD A LFD RD SW +I GYV V
Sbjct: 168 ELLHGLVVVNGLSQQVFLINVLIDMYSKCGKLDQAMSLFDRCDERDQVSWNSLISGYVRV 227
Query: 91 ADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN---MELGKQVHGLLFKLG 147
+E + L A+M + L + + VLKAC +N +E G +H KLG
Sbjct: 228 GAAEEPLNLLAKMHRDG-----LNLTTYALGSVLKACCINLNEGFIEKGMAIHCYTAKLG 282
Query: 148 SSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKI-----VNNCREGHFHQV 202
+I + +L++ Y K L++A +FS + N V + A I ++ + +
Sbjct: 283 MEFDIVVRTALLDMYAKNGSLKEAIKLFSLMPSKNVVTYNAMISGFLQMDEITDEASSEA 342
Query: 203 FNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVD 262
F F +M R ++ + TFS VLKAC GRQ+HA I K +SDE++ L++
Sbjct: 343 FKLFMDMQRRGLEPSPSTFSVVLKACSAAKTL-EYGRQIHALICKNNFQSDEFIGSALIE 401
Query: 263 MYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQES 322
+Y D + F K++IASW +M+ +++N A + +S I+ +E
Sbjct: 402 LYALMGSTEDGMQCFA-STSKQDIASWTSMIDCHVQNEQLESAFDLFRQLFSSHIRPEEY 460
Query: 323 LINDLRIACSSISA 336
++ + AC+ +A
Sbjct: 461 TVSLMMSACADFAA 474
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 86/286 (30%), Positives = 140/286 (48%), Gaps = 13/286 (4%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+ C +L ARQLFD MP R+ S+ +I GY + Y++ + LF E + L
Sbjct: 91 MYCKCRELGFARQLFDRMPERNIISFNSLISGYTQMGFYEQAMELFLEAREAN-----LK 145
Query: 115 FPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFV 174
+ L C +++LG+ +HGL+ G S+ + L LI+ Y K L+ A +
Sbjct: 146 LDKFTYAGALGFCGERCDLDLGELLHGLVVVNGLSQQVFLINVLIDMYSKCGKLDQAMSL 205
Query: 175 FSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDD 234
F + + V W + I R G + N +M R+ + +Y SVLKAC ++
Sbjct: 206 FDRCDERDQVSWNSLISGYVRVGAAEEPLNLLAKMHRDGLNLTTYALGSVLKACCINLNE 265
Query: 235 G--NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAM 292
G G +H K+G+E D V+ L+DMY K L++A ++F L+ KN+ ++NAM
Sbjct: 266 GFIEKGMAIHCYTAKLGMEFDIVVRTALLDMYAKNGSLKEAIKLFSLM-PSKNVVTYNAM 324
Query: 293 LVGY-----IRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSS 333
+ G+ I + EA K M+ G++ S + + ACS+
Sbjct: 325 ISGFLQMDEITDEASSEAFKLFMDMQRRGLEPSPSTFSVVLKACSA 370
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 74/285 (25%), Positives = 129/285 (45%), Gaps = 12/285 (4%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADY-----QECITLFAEMMKR 106
LL M+ G L A +LF MP ++ ++ MI G++ + + E LF +M +R
Sbjct: 293 LLDMYAKNGSLKEAIKLFSLMPSKNVVTYNAMISGFLQMDEITDEASSEAFKLFMDMQRR 352
Query: 107 KKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166
L P+ V VLKAC +E G+Q+H L+ K + + +LI Y
Sbjct: 353 G----LEPSPSTFSV-VLKACSAAKTLEYGRQIHALICKNNFQSDEFIGSALIELYALMG 407
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
ED F+ + + WT+ I + + F+ F+++ I+ YT S ++
Sbjct: 408 STEDGMQCFASTSKQDIASWTSMIDCHVQNEQLESAFDLFRQLFSSHIRPEEYTVSLMMS 467
Query: 227 ACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
AC + G Q+ +K G+++ V+ + MY K + A +VF + V ++
Sbjct: 468 ACADFAALSS-GEQIQGYAIKSGIDAFTSVKTSSISMYAKSGNMPLANQVF-IEVQNPDV 525
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
A+++AM+ ++G EA MK GI+ + + IAC
Sbjct: 526 ATYSAMISSLAQHGSANEALNIFESMKTHGIKPNQQAFLGVLIAC 570
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 92/197 (46%), Gaps = 2/197 (1%)
Query: 135 LGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNC 194
LGK HG + K + + L +L+N Y K R L A +F ++ N + + + I
Sbjct: 65 LGKLAHGHMIKSSLNPCLYLLNNLLNMYCKCRELGFARQLFDRMPERNIISFNSLISGYT 124
Query: 195 REGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDE 254
+ G + Q F E +K + +T++ L CG D + G +H +V GL
Sbjct: 125 QMGFYEQAMELFLEAREANLKLDKFTYAGALGFCGE-RCDLDLGELLHGLVVVNGLSQQV 183
Query: 255 YVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKA 314
++ L+DMY KC L A +F+ D+++ SWN+++ GY+R G E L M
Sbjct: 184 FLINVLIDMYSKCGKLDQAMSLFDR-CDERDQVSWNSLISGYVRVGAAEEPLNLLAKMHR 242
Query: 315 SGIQIQESLINDLRIAC 331
G+ + + + AC
Sbjct: 243 DGLNLTTYALGSVLKAC 259
>gi|357139595|ref|XP_003571366.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
chloroplastic-like [Brachypodium distachyon]
Length = 674
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 85/314 (27%), Positives = 153/314 (48%), Gaps = 13/314 (4%)
Query: 6 LPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTA 65
LP T Y L+ + +++ A +L H+ +P NR+L M+++CG L A
Sbjct: 97 LPPGT--YDALVTAASALREAGSAAAVLWHMESS-GFQPDQYMWNRVLGMYLACGMLAEA 153
Query: 66 RQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLK 125
R++F+ MP R +W VM+ G VD + + LF E+ G M + ++V ++
Sbjct: 154 REVFEGMPARSRVTWGVMMGGLVDGRQPRGALALFGELW----GEMGVGAGPRVLVVAVR 209
Query: 126 ACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVV 185
A ++ G+++H + K+G+ + L +L++ Y K L++A VF + + V
Sbjct: 210 AATALGSVRAGQELHCCVAKMGACEDQYLPCALVDMYSKCGRLDEARRVFDGMPWRSVVA 269
Query: 186 WTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDG--NCGRQMHA 243
W + G + + + +M + + +TFS++L G G +Q+HA
Sbjct: 270 WNTMLAAYSLHGCAEEAVDLYHDMCECGVVFDQFTFSTML---GVFSRLGLLEHAKQIHA 326
Query: 244 NIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYV 303
++++ GL D LVD+Y K + DA VFE + +N+ SWNA++ GY +G+
Sbjct: 327 SLIQSGLHMDIVGNTALVDLYCKWGRMEDARHVFERM-PSRNLISWNALIAGYGYHGMGA 385
Query: 304 EATKFLYLMKASGI 317
A + + A GI
Sbjct: 386 HAIEMFERLIAEGI 399
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 107/246 (43%), Gaps = 9/246 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ CG+LD AR++FD MP R +W M+ Y +E + L+ +M +
Sbjct: 242 LVDMYSKCGRLDEARRVFDGMPWRSVVAWNTMLAAYSLHGCAEEAVDLYHDMCECG---- 297
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+VF + +L +E KQ+H L + G +I +L++ Y K+ +EDA
Sbjct: 298 -VVFDQFTFSTMLGVFSRLGLLEHAKQIHASLIQSGLHMDIVGNTALVDLYCKWGRMEDA 356
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--G 229
VF ++ N + W A I G F+ + E I N T+ VL AC
Sbjct: 357 RHVFERMPSRNLISWNALIAGYGYHGMGAHAIEMFERLIAEGIAPNHVTYLGVLNACRFS 416
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
G D G Q+ A K + Y C +++++G+ LL +A + W
Sbjct: 417 GFIDKGKRIFQLMAQNPKTKPRAMHYA-C-VIELFGQQGLLDEAYSMIRKAPFTPTANMW 474
Query: 290 NAMLVG 295
A+L
Sbjct: 475 GALLTA 480
>gi|255566945|ref|XP_002524455.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536243|gb|EEF37895.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 486
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 77/251 (30%), Positives = 130/251 (51%), Gaps = 10/251 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ + S G LD A +LFDE+P+RD SW MI GY ++E + F EM++
Sbjct: 196 LITGYASRGFLDQALELFDEIPVRDVVSWNAMIAGYTQSGRFEEALIFFEEMLRAN---- 251
Query: 112 LLVFPAW-IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
V P ++ VL AC + ++++G V + + G NI + +LI+ Y K LE+
Sbjct: 252 --VTPNMSTLLSVLSACAQSGSLKMGNWVSSWIEEHGLESNIKVMNALIDMYAKCGDLEN 309
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
A +F +K N + W I + + F++M + ++ N T S+L AC
Sbjct: 310 ALHLFEGIKNKNVISWNVMIGGYTHLSCYKEALGLFRQMLQSNVEPNDVTLLSILPACAN 369
Query: 231 VDDDGNCGRQMHANIVK-IGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ G G+ +HA I K + ++ + L+DMY KC + A ++F+ + + K++ASW
Sbjct: 370 LGALG-LGKWIHAYIDKNMKNLANNALWTSLIDMYAKCGNIEVANQIFDGM-NPKSLASW 427
Query: 290 NAMLVGYIRNG 300
NAM+ G+ +G
Sbjct: 428 NAMISGFAMHG 438
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 104/245 (42%), Gaps = 33/245 (13%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLG-------------------------------SSRN 151
VLK+C + GKQ+HG + KLG S R+
Sbjct: 130 VLKSCARISSTHEGKQIHGQILKLGFDNDAFVHTSLITMYVQNGELGNARLVFERSSMRD 189
Query: 152 ISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGR 211
+ +LI Y L+ A +F ++ + V W A I + G F + F+EM R
Sbjct: 190 VVSYTALITGYASRGFLDQALELFDEIPVRDVVSWNAMIAGYTQSGRFEEALIFFEEMLR 249
Query: 212 ERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLR 271
+ N T SVL AC G + + I + GLES+ V L+DMY KC L
Sbjct: 250 ANVTPNMSTLLSVLSACAQ-SGSLKMGNWVSSWIEEHGLESNIKVMNALIDMYAKCGDLE 308
Query: 272 DAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
+A +FE I KN+ SWN M+ GY Y EA M S ++ + + + AC
Sbjct: 309 NALHLFEGI-KNKNVISWNVMIGGYTHLSCYKEALGLFRQMLQSNVEPNDVTLLSILPAC 367
Query: 332 SSISA 336
+++ A
Sbjct: 368 ANLGA 372
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 109/228 (47%), Gaps = 17/228 (7%)
Query: 8 ITTDMYTCL--IKECTFQKDSAGAFELLNHIRKRV---NIKPTLLFLNRLLLMHVSCGQL 62
+T +M T L + C +G+ ++ N + + ++ + +N L+ M+ CG L
Sbjct: 252 VTPNMSTLLSVLSACA----QSGSLKMGNWVSSWIEEHGLESNIKVMNALIDMYAKCGDL 307
Query: 63 DTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI-IV 121
+ A LF+ + ++ SW VMI GY ++ Y+E + LF +M++ V P + ++
Sbjct: 308 ENALHLFEGIKNKNVISWNVMIGGYTHLSCYKEALGLFRQMLQSN------VEPNDVTLL 361
Query: 122 CVLKACVCTMNMELGKQVHGLLFK-LGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
+L AC + LGK +H + K + + N +L SLI+ Y K +E A+ +F +
Sbjct: 362 SILPACANLGALGLGKWIHAYIDKNMKNLANNALWTSLIDMYAKCGNIEVANQIFDGMNP 421
Query: 181 HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+ W A I G + F M +E + ++ TF VL AC
Sbjct: 422 KSLASWNAMISGFAMHGQADLAISLFSRMTKEGLVPDNITFIGVLSAC 469
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 100/240 (41%), Gaps = 33/240 (13%)
Query: 132 NMELGKQVHGLLFKLGSSRNISLTGSLINF--YGKFRCLEDADFVFSQLKRHNTVVWTAK 189
N++ KQ+H + K G LI F + L A +F + + N ++W
Sbjct: 36 NLKTLKQIHSQVIKTGLHNTHFALSKLIEFCVISPYGDLSYALLLFKSIGKPNQIIWNNI 95
Query: 190 IVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIG 249
I + +M N+YT+ VLK+C + + G+Q+H I+K+G
Sbjct: 96 IRGLSLSESPILAIQYYVDMISSGFTPNTYTYPFVLKSCARISST-HEGKQIHGQILKLG 154
Query: 250 LESDEYVQCGLVDMY------GKCRL------LRDA----------------ERVFELI- 280
++D +V L+ MY G RL +RD ++ EL
Sbjct: 155 FDNDAFVHTSLITMYVQNGELGNARLVFERSSMRDVVSYTALITGYASRGFLDQALELFD 214
Query: 281 -VDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKI 339
+ +++ SWNAM+ GY ++G + EA F M + + S + + AC+ + K+
Sbjct: 215 EIPVRDVVSWNAMIAGYTQSGRFEEALIFFEEMLRANVTPNMSTLLSVLSACAQSGSLKM 274
>gi|225452956|ref|XP_002279032.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39350
[Vitis vinifera]
gi|296082987|emb|CBI22288.3| unnamed protein product [Vitis vinifera]
Length = 676
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 83/282 (29%), Positives = 139/282 (49%), Gaps = 9/282 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+++CG+++ AR++FD M R SW MI GY +E + +F M+ +
Sbjct: 162 NSLMAMYMNCGEMEVARRVFDLMRERTLVSWNTMINGYFKNGCVKEALMVFDWMIGKG-- 219
Query: 110 HMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+ P +V VL C +E+G++VH L+ +IS+ SL++ Y K +
Sbjct: 220 ----IEPDCATVVSVLPVCSYLKELEVGRRVHALVEVKNLGEDISVWNSLLDMYAKCGNM 275
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
++A +F ++ + + V WT + G + M E +K N T +SVL AC
Sbjct: 276 DEAQMIFYEMDKRDVVSWTTMMNGYILNGDARSALLLCQMMQFESVKPNFVTLASVLSAC 335
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
+ + GR +H ++ LES+ V+ L+DMY KC + + RVF K+ A
Sbjct: 336 ASLYSLKH-GRCLHGWAIRQKLESEVIVETALIDMYAKCNNVNLSFRVFSK-TSKQRTAP 393
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIA 330
WNA++ G I NGL +A + M + ++ +N L A
Sbjct: 394 WNAIISGCIHNGLSRKAIELFKQMLMEAVDPNDATLNSLLPA 435
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 85/294 (28%), Positives = 136/294 (46%), Gaps = 9/294 (3%)
Query: 41 NIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLF 100
N+ + N LL M+ CG +D A+ +F EM RD SW M+ GY+ D + + L
Sbjct: 254 NLGEDISVWNSLLDMYAKCGNMDEAQMIFYEMDKRDVVSWTTMMNGYILNGDARSAL-LL 312
Query: 101 AEMMKRKKGHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLI 159
+MM+ + V P ++ + VL AC +++ G+ +HG + + + +LI
Sbjct: 313 CQMMQFES-----VKPNFVTLASVLSACASLYSLKHGRCLHGWAIRQKLESEVIVETALI 367
Query: 160 NFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSY 219
+ Y K + + VFS+ + T W A I G + FK+M E + N
Sbjct: 368 DMYAKCNNVNLSFRVFSKTSKQRTAPWNAIISGCIHNGLSRKAIELFKQMLMEAVDPNDA 427
Query: 220 TFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFEL 279
T +S+L A + D R MH +++ G S V L+D+Y KC L A +F
Sbjct: 428 TLNSLLPAYAFLTDLQQ-ARNMHGYLIRSGFLSRIEVATILIDIYSKCGSLESAHNIFNG 486
Query: 280 IVDK-KNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
I K K+I +W+A++ GY +G A M SG++ E + ACS
Sbjct: 487 IPKKDKDIITWSAIIAGYGMHGHGETAISLFDQMVQSGVKPNEITFTSILHACS 540
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 86/336 (25%), Positives = 144/336 (42%), Gaps = 10/336 (2%)
Query: 6 LPITTDMYTCLIKECTFQKDSAGAFELLNH-IRKRVNIKP-TLLFLNRLLLMHVSCGQLD 63
L T Y L++ CT +K ++ H I + P + L+ L + G
Sbjct: 14 LLTATARYQSLLQRCTSRKSIPNTKQIHAHTITLGLLSSPYSHHLLSSLAAAYAMFGCAP 73
Query: 64 TARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIVC 122
AR+LFDE+ SW MI Y + + + LF +M+ + +P +
Sbjct: 74 HARKLFDELRNPSLFSWNAMIRMYTNSGLSYDALGLFVQMLASGRR-----WPDNYTYPF 128
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
V+KAC + E+G +H G + + SL+ Y +E A VF ++
Sbjct: 129 VIKACGDYLLPEMGALIHARTVMSGFDSDAFVQNSLMAMYMNCGEMEVARRVFDLMRERT 188
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
V W I + G + F M + I+ + T SVL C + + GR++H
Sbjct: 189 LVSWNTMINGYFKNGCVKEALMVFDWMIGKGIEPDCATVVSVLPVCSYLKEL-EVGRRVH 247
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
A + L D V L+DMY KC + +A+ +F +DK+++ SW M+ GYI NG
Sbjct: 248 ALVEVKNLGEDISVWNSLLDMYAKCGNMDEAQMIF-YEMDKRDVVSWTTMMNGYILNGDA 306
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIACSSISASK 338
A +M+ ++ + + AC+S+ + K
Sbjct: 307 RSALLLCQMMQFESVKPNFVTLASVLSACASLYSLK 342
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/260 (23%), Positives = 118/260 (45%), Gaps = 13/260 (5%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R ++ ++ L+ M+ C ++ + ++F + + W +I G + ++ I
Sbjct: 353 RQKLESEVIVETALIDMYAKCNNVNLSFRVFSKTSKQRTAPWNAIISGCIHNGLSRKAIE 412
Query: 99 LFAEMMKRKKGHMLLVFPA-WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGS 157
LF +M+ M V P + +L A +++ + +HG L + G I +
Sbjct: 413 LFKQML------MEAVDPNDATLNSLLPAYAFLTDLQQARNMHGYLIRSGFLSRIEVATI 466
Query: 158 LINFYGKFRCLEDADFVFSQL--KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIK 215
LI+ Y K LE A +F+ + K + + W+A I GH + F +M + +K
Sbjct: 467 LIDIYSKCGSLESAHNIFNGIPKKDKDIITWSAIIAGYGMHGHGETAISLFDQMVQSGVK 526
Query: 216 KNSYTFSSVLKAC--GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDA 273
N TF+S+L AC G+ D+G + ++ L +D Y C ++D+ G+ L +A
Sbjct: 527 PNEITFTSILHACSHAGLVDEGLGLFKFMLEDNQMSLRTDHYT-C-VIDLLGRAGRLEEA 584
Query: 274 ERVFELIVDKKNIASWNAML 293
+ + + N A W A+L
Sbjct: 585 YELIRTMAFRPNHAVWGALL 604
>gi|255582620|ref|XP_002532091.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528238|gb|EEF30293.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 446
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 88/261 (33%), Positives = 122/261 (46%), Gaps = 7/261 (2%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ C +LD+AR++FDE+ RD SW MI GY + +E + LF EM R++G
Sbjct: 168 LITMYAKCSKLDSARKVFDEILERDIVSWNSMISGYTKMGFAREAVRLFMEM--REQGFE 225
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+ +V +L AC ++ LGK V L+ N +LI+ YGK L A
Sbjct: 226 PVEM---TLVSILGACGDLGDLALGKWVEALIGDKKMELNSYTASALIDMYGKCGDLMSA 282
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
VF + + V W A I + G + F M I N T VL AC +
Sbjct: 283 RRVFDNMAEKDIVTWNAMITGYAQNGASDEAMTLFNVMREAGITPNEITMVVVLSACASI 342
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
+ G+ + + GL+ D YV LVDMY KC L +A RVFE + KN SWNA
Sbjct: 343 GAL-DLGKWVEMYASQRGLQHDVYVASALVDMYAKCGSLDNALRVFENM-PHKNEVSWNA 400
Query: 292 MLVGYIRNGLYVEATKFLYLM 312
M+ +G EA M
Sbjct: 401 MISALAFHGRAREALSLFSRM 421
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 86/274 (31%), Positives = 128/274 (46%), Gaps = 10/274 (3%)
Query: 65 ARQLFDEMPLRDFNSWAVMIVGYVDV-ADYQECITLFAEMMKRKKGHMLLVFPAWIIVCV 123
A LF +MP + ++ VMI G +Y I L+ +M FP I C
Sbjct: 79 ASLLFTQMPNPNDYAFNVMIRGLTTTWRNYSLAIQLYYQMKSLGLKPNNFTFPFLFISCA 138
Query: 124 -LKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
L A C G+ H L+ K+G + + + SLI Y K L+ A VF ++ +
Sbjct: 139 NLVALHC------GQIAHSLVLKMGFNNDSHINHSLITMYAKCSKLDSARKVFDEILERD 192
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
V W + I + G + F EM + + T S+L ACG + D G+ +
Sbjct: 193 IVSWNSMISGYTKMGFAREAVRLFMEMREQGFEPVEMTLVSILGACGDLGDLA-LGKWVE 251
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
A I +E + Y L+DMYGKC L A RVF+ + + K+I +WNAM+ GY +NG
Sbjct: 252 ALIGDKKMELNSYTASALIDMYGKCGDLMSARRVFDNMAE-KDIVTWNAMITGYAQNGAS 310
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
EA +M+ +GI E + + AC+SI A
Sbjct: 311 DEAMTLFNVMREAGITPNEITMVVVLSACASIGA 344
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 83/179 (46%), Gaps = 8/179 (4%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ CG L +AR++FD M +D +W MI GY E +TLF M R+ G
Sbjct: 269 LIDMYGKCGDLMSARRVFDNMAEKDIVTWNAMITGYAQNGASDEAMTLFNVM--REAG-- 324
Query: 112 LLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
+ P I +V VL AC ++LGK V + G ++ + +L++ Y K L++
Sbjct: 325 --ITPNEITMVVVLSACASIGALDLGKWVEMYASQRGLQHDVYVASALVDMYAKCGSLDN 382
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEM-GRERIKKNSYTFSSVLKAC 228
A VF + N V W A I G + + F M ++ N TF V AC
Sbjct: 383 ALRVFENMPHKNEVSWNAMISALAFHGRAREALSLFSRMLNGSTVRPNDITFIGVFAAC 441
>gi|218184996|gb|EEC67423.1| hypothetical protein OsI_34621 [Oryza sativa Indica Group]
Length = 799
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 116/246 (47%), Gaps = 7/246 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N +L + G + TA LFD MP D SW ++ GY +QE + LF EM +R
Sbjct: 87 NTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVS 146
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
F +LK+C + LG QVH L K G ++ +L++ YGK R L+
Sbjct: 147 PDRTTF-----AVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLD 201
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
DA F + N V W + I + + + F EM R + + +++S ++C
Sbjct: 202 DALCFFYGMPERNWVSWGSAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCA 261
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ N GRQ+HA+ +K SD V +VD+Y K L DA R F + + +
Sbjct: 262 AM-SCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAF-FGLPNHTVETS 319
Query: 290 NAMLVG 295
NAM+VG
Sbjct: 320 NAMMVG 325
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 76/298 (25%), Positives = 132/298 (44%), Gaps = 26/298 (8%)
Query: 12 MYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLL-----------MHVSCG 60
M LI + QKDS ++ + + + T+L N +L M+ CG
Sbjct: 378 MEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFDAFVASTVVDMYCKCG 437
Query: 61 QLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEM--MKRKKGHMLLVFPAW 118
+D A++L D + + SW ++ G+ + + F+EM M K H +
Sbjct: 438 IIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEAAQKFFSEMLDMGLKPDH-------F 490
Query: 119 IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL 178
VL C +ELGKQ+HG + K + ++ +L++ Y K + D+ VF ++
Sbjct: 491 TFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKV 550
Query: 179 KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG--GVDDDGN 236
++ + V W A I G + F+ M +E + N TF +VL+AC G+ DDG
Sbjct: 551 EKRDFVSWNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDG- 609
Query: 237 CGRQMHANIVKIGLESD-EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
C R H LE E+ C +VD+ G+ + ++A + + + + W +L
Sbjct: 610 C-RYFHLMTTHYKLEPQLEHFAC-MVDILGRSKGPQEAVKFINSMPFQADAVIWKTLL 665
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 93/193 (48%), Gaps = 2/193 (1%)
Query: 143 LFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQV 202
+F R+ +++ Y + A +F + + V W A + C+ G F +
Sbjct: 74 VFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQES 133
Query: 203 FNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVD 262
+ F EM R + + TF+ +LK+C +++ + G Q+HA VK GLE D LVD
Sbjct: 134 VDLFVEMARRGVSPDRTTFAVLLKSCSALEE-LSLGVQVHALAVKTGLEIDVRTGSALVD 192
Query: 263 MYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQES 322
MYGKCR L DA F + ++N SW + + G ++N YV + M+ G+ + +
Sbjct: 193 MYGKCRSLDDA-LCFFYGMPERNWVSWGSAIAGCVQNEQYVRGLELFIEMQRLGLGVSQP 251
Query: 323 LINDLRIACSSIS 335
+C+++S
Sbjct: 252 SYASAFRSCAAMS 264
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/290 (25%), Positives = 121/290 (41%), Gaps = 50/290 (17%)
Query: 47 LFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR 106
L + +L ++ C L A +F M +D SW +I Y + I F EM++
Sbjct: 362 LAIKSVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLR- 420
Query: 107 KKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166
F A++ ++++ Y K
Sbjct: 421 --------FDAFV-----------------------------------ASTVVDMYCKCG 437
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNC--REGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
+++A + ++ V W A + +E Q F F EM +K + +TF++V
Sbjct: 438 IIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEAAQKF--FSEMLDMGLKPDHFTFATV 495
Query: 225 LKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
L C + G+Q+H I+K + DEY+ LVDMY KC + D+ VFE V+K+
Sbjct: 496 LDTCANLATI-ELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEK-VEKR 553
Query: 285 NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
+ SWNAM+ GY +GL VEA + M+ + + + ACS +
Sbjct: 554 DFVSWNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHV 603
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 108/252 (42%), Gaps = 34/252 (13%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ C LD A F MP R++ SW I G V Y + LF EM + G
Sbjct: 190 LVDMYGKCRSLDDALCFFYGMPERNWVSWGSAIAGCVQNEQYVRGLELFIEMQRLGLGVS 249
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+ + C +C+ T G+Q+H K S + + ++++ Y K L DA
Sbjct: 250 QPSYASAFRSCAAMSCLNT-----GRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDA 304
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
F L H A +V G F M R I+ + + S V AC
Sbjct: 305 RRAFFGLPNHTVETSNAMMV-----GLF---------MIRSSIRFDVVSLSGVFSACA-- 348
Query: 232 DDDGN-CGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWN 290
+ G G+Q+H +K ++D+YGKC+ L +A +F+ + K ++ SWN
Sbjct: 349 ETKGYFPGQQVHCLAIK-----------SVLDLYGKCKALMEAYLIFQGMKQKDSV-SWN 396
Query: 291 AMLVGYIRNGLY 302
A++ +NG Y
Sbjct: 397 AIIAALEQNGHY 408
>gi|242032375|ref|XP_002463582.1| hypothetical protein SORBIDRAFT_01g002460 [Sorghum bicolor]
gi|241917436|gb|EER90580.1| hypothetical protein SORBIDRAFT_01g002460 [Sorghum bicolor]
Length = 610
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 87/305 (28%), Positives = 146/305 (47%), Gaps = 14/305 (4%)
Query: 29 AFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYV 88
AF L + + VN+ +L + CG ++ AR +FD MP+R+ SW MI GY
Sbjct: 186 AFALRAGLDELVNVSTAVLD------AYCKCGAVEAARAVFDWMPVRNSVSWNAMIDGYA 239
Query: 89 DVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGS 148
+ + E + LF M++ + ++ L+AC ++ ++VH LL ++G
Sbjct: 240 ENGNASEALALFWRMVQEG-----VDVTDAAVLAALQACRELGCLDEARRVHELLVRVGL 294
Query: 149 SRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNT-VVWTAKIVNNCREGHFHQVFNDFK 207
N+S+ +LI Y K + + A F++L T + W A I+ + G F
Sbjct: 295 KSNVSVMNALITTYSKCKRADLAAHAFNELGIKKTRISWNAMILGFTQNGCSEDAERLFA 354
Query: 208 EMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKC 267
M E +K +S+T SV+ A + D R +H ++ L+ D YV L+DMY KC
Sbjct: 355 RMQLENVKPDSFTLVSVIPAVADISDPLQ-ARWIHGYSIRHQLDQDIYVLTALIDMYSKC 413
Query: 268 RLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDL 327
+ A ++F+ D+ ++ +WNAM+ GY +G A + MK +G E+ +
Sbjct: 414 GRVTIARKLFDSARDR-HVITWNAMIHGYGSHGFGQVAVELFEEMKGTGSLPNETTFLSV 472
Query: 328 RIACS 332
ACS
Sbjct: 473 LAACS 477
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 84/327 (25%), Positives = 145/327 (44%), Gaps = 13/327 (3%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
+T L+K C + D A + + R + L L M+ C + AR++FD M
Sbjct: 62 FTALLKLCAARADLATGRAVHAQLTAR-GLASESLAATALANMYFKCRRPVDARRVFDRM 120
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI-IVCVLKACVCTM 131
P RD +W ++ GY L E + R +G P I +V VL AC
Sbjct: 121 PARDRVAWNALVAGYA----RNGLPALAMEAVVRMQGEEGGEQPDSITLVSVLPACADAR 176
Query: 132 NMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIV 191
+ ++VH + G ++++ ++++ Y K +E A VF + N+V W A I
Sbjct: 177 VLGACREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDWMPVRNSVSWNAMID 236
Query: 192 NNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC---GGVDDDGNCGRQMHANIVKI 248
G+ + F M +E + + L+AC G +D+ R++H +V++
Sbjct: 237 GYAENGNASEALALFWRMVQEGVDVTDAAVLAALQACRELGCLDE----ARRVHELLVRV 292
Query: 249 GLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKF 308
GL+S+ V L+ Y KC+ A F + KK SWNAM++G+ +NG +A +
Sbjct: 293 GLKSNVSVMNALITTYSKCKRADLAAHAFNELGIKKTRISWNAMILGFTQNGCSEDAERL 352
Query: 309 LYLMKASGIQIQESLINDLRIACSSIS 335
M+ ++ + + A + IS
Sbjct: 353 FARMQLENVKPDSFTLVSVIPAVADIS 379
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 112/260 (43%), Gaps = 15/260 (5%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFN-SWAVMIVGYVDVADYQECI 97
RV +K + +N L+ + C + D A F+E+ ++ SW MI+G+ ++
Sbjct: 291 RVGLKSNVSVMNALITTYSKCKRADLAAHAFNELGIKKTRISWNAMILGFTQNGCSEDAE 350
Query: 98 TLFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTG 156
LFA M V P ++ +V V+ A + + +HG + ++I +
Sbjct: 351 RLFARMQLEN------VKPDSFTLVSVIPAVADISDPLQARWIHGYSIRHQLDQDIYVLT 404
Query: 157 SLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKK 216
+LI+ Y K + A +F + + + W A I G F+EM
Sbjct: 405 ALIDMYSKCGRVTIARKLFDSARDRHVITWNAMIHGYGSHGFGQVAVELFEEMKGTGSLP 464
Query: 217 NSYTFSSVLKAC---GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDA 273
N TF SVL AC G VD+ GR+ A++ GLE LVD+ G+ + +A
Sbjct: 465 NETTFLSVLAACSHAGLVDE----GRKYFASMKDYGLEPGMEHYGTLVDLLGRAGKVDEA 520
Query: 274 ERVFELIVDKKNIASWNAML 293
+ + + I+ + AML
Sbjct: 521 WSFIQNMPIEPGISVYGAML 540
>gi|449494221|ref|XP_004159483.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g04780-like [Cucumis sativus]
Length = 638
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 82/299 (27%), Positives = 138/299 (46%), Gaps = 7/299 (2%)
Query: 40 VNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITL 99
+ +K LL N L+ M+ CG +D ARQ+FDEMP R SW MI + E + L
Sbjct: 93 MGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRSLVSWNTMIGSLTQNGEENEALDL 152
Query: 100 FAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLI 159
+M + F + I VL AC + + +H K N+ + +L+
Sbjct: 153 LLQMQREGTP-----FSEFTISSVLCACAAKCALSECQLLHAFAIKAAMDLNVFVATALL 207
Query: 160 NFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSY 219
+ Y K ++DA VF + + V W++ + + Q F++ +K + +
Sbjct: 208 DVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQF 267
Query: 220 TFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFEL 279
SSV+ AC G+ G+Q++A + K G S+ +V L+DMY KC + ++ +VF
Sbjct: 268 LMSSVICACAGLAAMIE-GKQVNALLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFR- 325
Query: 280 IVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASK 338
V+K+N+ WNAM+ G R+ +E M+ G+ + + AC + K
Sbjct: 326 DVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSVLSACGHMGLVK 384
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 110/214 (51%), Gaps = 2/214 (0%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
+LK C + GK H + +G ++ + LIN Y K ++ A VF ++ +
Sbjct: 70 ILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRS 129
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
V W I + + G ++ + +M RE + +T SSVL AC C + +H
Sbjct: 130 LVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSEC-QLLH 188
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
A +K ++ + +V L+D+Y KC L++DA VFE + D +++ +W++M GY++N +Y
Sbjct: 189 AFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPD-RSVVTWSSMAAGYVQNEMY 247
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+A +G++ + L++ + AC+ ++A
Sbjct: 248 EQALALFRKAWETGLKHDQFLMSSVICACAGLAA 281
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 100/215 (46%), Gaps = 15/215 (6%)
Query: 15 CLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL 74
C + EC +LL+ + + + LL ++ CG + A +F+ MP
Sbjct: 179 CALSEC----------QLLHAFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPD 228
Query: 75 RDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNME 134
R +W+ M GYV Y++ + LF RK L +++ V+ AC M
Sbjct: 229 RSVVTWSSMAAGYVQNEMYEQALALF-----RKAWETGLKHDQFLMSSVICACAGLAAMI 283
Query: 135 LGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNC 194
GKQV+ LL K G NI + SLI+ Y K +E++ VF +++ N V+W A I
Sbjct: 284 EGKQVNALLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLS 343
Query: 195 REGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
R +V F++M + + N TF SVL ACG
Sbjct: 344 RHARSLEVMILFEKMQQMGLSPNDVTFVSVLSACG 378
>gi|212274935|ref|NP_001130299.1| uncharacterized protein LOC100191393 [Zea mays]
gi|194688780|gb|ACF78474.1| unknown [Zea mays]
gi|414586171|tpg|DAA36742.1| TPA: hypothetical protein ZEAMMB73_518704 [Zea mays]
Length = 695
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 94/322 (29%), Positives = 150/322 (46%), Gaps = 15/322 (4%)
Query: 17 IKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL-R 75
+K C D+A + + + R + + + L+L++ G++ AR++FD L
Sbjct: 113 LKACCVVGDTAAGVGI-HGLCVRAGYQEHDVVASSLVLVYSKGGRIGDARRVFDGAGLGS 171
Query: 76 DFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMEL 135
+W M+ GY ++ + +F EM + + H F +LKAC
Sbjct: 172 GIATWNAMVSGYAHAGHGRDALLVFREMRRHEGQHQPDEF---TFASLLKACSGLGATRE 228
Query: 136 GKQVHGLLFKLG--SSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNN 193
G QVH + G ++ N L G+L++ Y K R L A VF +L+R N + WTA +V +
Sbjct: 229 GAQVHAAMTASGFSTASNAILAGALVDMYVKCRRLPVAMQVFERLERKNVIQWTAVVVGH 288
Query: 194 CREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDD---GNCGRQMHANIVKIGL 250
+EG + F+ R + +S+ SSV+ GV D GRQ+H +K
Sbjct: 289 AQEGQVTEALELFRRFWRSGARPDSHVLSSVV----GVLADFALVEQGRQVHCYGIKDPT 344
Query: 251 ESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLY 310
+D +VDMY KC L +AER+F + N+ SW M+ G ++GL EA
Sbjct: 345 GTDVSAGNSIVDMYLKCGLPDEAERMFREM-RAPNVVSWTTMVNGLGKHGLGREAVALFE 403
Query: 311 LMKASGIQIQESLINDLRIACS 332
M+A G++ E L ACS
Sbjct: 404 EMRAGGVEPDEVTYLALLSACS 425
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 90/321 (28%), Positives = 146/321 (45%), Gaps = 12/321 (3%)
Query: 12 MYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDE 71
M L++ G +L I K + + N L+ M+V CG+LD A ++F
Sbjct: 6 MIAGLLRASARSSSLRGGVQLHGAITK-MGFGSDTMLGNNLIDMYVKCGELDLACEVFGG 64
Query: 72 MPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTM 131
M R+ SW ++VG++ D C+ L EM + + + LKAC
Sbjct: 65 MRDRNVVSWTALMVGFLRHGDATGCLRLLGEMRTASEA----APNEYTLSASLKACCVVG 120
Query: 132 NMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVV-WTAKI 190
+ G +HGL + G + + SL+ Y K + DA VF + + W A +
Sbjct: 121 DTAAGVGIHGLCVRAGYQEHDVVASSLVLVYSKGGRIGDARRVFDGAGLGSGIATWNAMV 180
Query: 191 VNNCREGHFHQVFNDFKEMGRE--RIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKI 248
GH F+EM R + + + +TF+S+LKAC G+ G Q+HA +
Sbjct: 181 SGYAHAGHGRDALLVFREMRRHEGQHQPDEFTFASLLKACSGLGATRE-GAQVHAAMTAS 239
Query: 249 GLE--SDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEAT 306
G S+ + LVDMY KCR L A +VFE + ++KN+ W A++VG+ + G EA
Sbjct: 240 GFSTASNAILAGALVDMYVKCRRLPVAMQVFERL-ERKNVIQWTAVVVGHAQEGQVTEAL 298
Query: 307 KFLYLMKASGIQIQESLINDL 327
+ SG + +++ +
Sbjct: 299 ELFRRFWRSGARPDSHVLSSV 319
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 102/223 (45%), Gaps = 4/223 (1%)
Query: 119 IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL 178
+I +L+A + ++ G Q+HG + K+G + L +LI+ Y K L+ A VF +
Sbjct: 6 MIAGLLRASARSSSLRGGVQLHGAITKMGFGSDTMLGNNLIDMYVKCGELDLACEVFGGM 65
Query: 179 KRHNTVVWTAKIVNNCREGHFHQVFNDFKEM-GRERIKKNSYTFSSVLKACGGVDDDGNC 237
+ N V WTA +V R G EM N YT S+ LKAC V D
Sbjct: 66 RDRNVVSWTALMVGFLRHGDATGCLRLLGEMRTASEAAPNEYTLSASLKACCVVGDTA-A 124
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYI 297
G +H V+ G + + V LV +Y K + DA RVF+ IA+WNAM+ GY
Sbjct: 125 GVGIHGLCVRAGYQEHDVVASSLVLVYSKGGRIGDARRVFDGAGLGSGIATWNAMVSGYA 184
Query: 298 RNGLYVEATKFLYLMKASGIQIQ--ESLINDLRIACSSISASK 338
G +A M+ Q Q E L ACS + A++
Sbjct: 185 HAGHGRDALLVFREMRRHEGQHQPDEFTFASLLKACSGLGATR 227
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/251 (22%), Positives = 108/251 (43%), Gaps = 13/251 (5%)
Query: 47 LFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK- 105
+ L+ M+V C +L A Q+F+ + ++ W ++VG+ E + LF +
Sbjct: 248 ILAGALVDMYVKCRRLPVAMQVFERLERKNVIQWTAVVVGHAQEGQVTEALELFRRFWRS 307
Query: 106 --RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYG 163
R H+L +V VL +E G+QVH K + ++S S+++ Y
Sbjct: 308 GARPDSHVLSS-----VVGVLADFAL---VEQGRQVHCYGIKDPTGTDVSAGNSIVDMYL 359
Query: 164 KFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSS 223
K ++A+ +F +++ N V WT + + G + F+EM ++ + T+ +
Sbjct: 360 KCGLPDEAERMFREMRAPNVVSWTTMVNGLGKHGLGREAVALFEEMRAGGVEPDEVTYLA 419
Query: 224 VLKACGGVDDDGNCGRQMHA-NIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282
+L AC C R + E+ C +VD+ G+ LR+A + +
Sbjct: 420 LLSACSHAGLVDECRRYFSCIRRDRTVRPKAEHYAC-MVDLLGRAGELREARDLIRTMPM 478
Query: 283 KKNIASWNAML 293
+ + W +L
Sbjct: 479 EPTVGVWQTLL 489
>gi|255549476|ref|XP_002515791.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545119|gb|EEF46630.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 352
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 79/283 (27%), Positives = 134/283 (47%), Gaps = 7/283 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ ++ CG++D AR++FD+M R SW MI Y + Q+ + LF EM +++G
Sbjct: 24 NMLINVYSKCGRIDCARKVFDKMLGRSLVSWNTMIGTYTQNGEEQKALGLFLEM--QREG 81
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ F ++C A T + KQ+H K+ N+ ++ +L++ Y K ++
Sbjct: 82 NPFSEFTVSTVLCASAAKSYTF---VCKQLHAFAMKVAMDANVYISTALLDVYAKSGLIK 138
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
+ VF + V W++ + + + + F ++ N +T SSV AC
Sbjct: 139 EGIRVFEGMSERTAVTWSSMVAGYVQNELYEEALASFNRARAIGLEYNQFTISSVSCACA 198
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
G+ GRQ+HA + K G S+ YV LVDMY KC +++A F L + NI W
Sbjct: 199 GLAASIE-GRQVHAVVCKTGFGSNSYVASSLVDMYAKCGSVKEAYIAF-LDAQRTNIVLW 256
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
N M+ + ++ +E M+ G+ E + ACS
Sbjct: 257 NVMISAFAKHSHSLEVMILFEKMQQIGMHPDEVTYVSVLSACS 299
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 105/204 (51%), Gaps = 3/204 (1%)
Query: 135 LGKQVHG-LLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNN 193
LGK H + G + + + LIN Y K ++ A VF ++ + V W I
Sbjct: 2 LGKACHAQAILHFGLTADTLTSNMLINVYSKCGRIDCARKVFDKMLGRSLVSWNTMIGTY 61
Query: 194 CREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESD 253
+ G + F EM RE + +T S+VL A C +Q+HA +K+ ++++
Sbjct: 62 TQNGEEQKALGLFLEMQREGNPFSEFTVSTVLCASAAKSYTFVC-KQLHAFAMKVAMDAN 120
Query: 254 EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMK 313
Y+ L+D+Y K L+++ RVFE + ++ + +W++M+ GY++N LY EA +
Sbjct: 121 VYISTALLDVYAKSGLIKEGIRVFEGMSERTAV-TWSSMVAGYVQNELYEEALASFNRAR 179
Query: 314 ASGIQIQESLINDLRIACSSISAS 337
A G++ + I+ + AC+ ++AS
Sbjct: 180 AIGLEYNQFTISSVSCACAGLAAS 203
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 87/197 (44%), Gaps = 5/197 (2%)
Query: 33 LNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVAD 92
L+ +V + + LL ++ G + ++F+ M R +W+ M+ GYV
Sbjct: 108 LHAFAMKVAMDANVYISTALLDVYAKSGLIKEGIRVFEGMSERTAVTWSSMVAGYVQNEL 167
Query: 93 YQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNI 152
Y+E + F R G L + + I V AC G+QVH ++ K G N
Sbjct: 168 YEEALASFNR--ARAIG---LEYNQFTISSVSCACAGLAASIEGRQVHAVVCKTGFGSNS 222
Query: 153 SLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRE 212
+ SL++ Y K +++A F +R N V+W I + H +V F++M +
Sbjct: 223 YVASSLVDMYAKCGSVKEAYIAFLDAQRTNIVLWNVMISAFAKHSHSLEVMILFEKMQQI 282
Query: 213 RIKKNSYTFSSVLKACG 229
+ + T+ SVL AC
Sbjct: 283 GMHPDEVTYVSVLSACS 299
>gi|125571124|gb|EAZ12639.1| hypothetical protein OsJ_02552 [Oryza sativa Japonica Group]
Length = 607
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 84/270 (31%), Positives = 133/270 (49%), Gaps = 11/270 (4%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
++ L+ + CG++D AR++FD MP R SW M++GY+ E LF EM R +
Sbjct: 207 MSSLVDFYGKCGEVDDAREVFDVMPERTVVSWNSMLMGYIHNGRIDEAADLFYEM--RVE 264
Query: 109 GHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
G V P + ++ L A ++ G+Q H + G ++ L S+INFY K
Sbjct: 265 G----VLPTRVSVLSFLSASADLEVLDGGRQGHAVAVSSGLEMDLILGSSMINFYCKVGL 320
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
+E A+ +F Q+ + V W I ++G + M +K + T +SV+ A
Sbjct: 321 VEAAEVIFEQMVERDIVTWNLMISGYLQDGQTDKALTTCHRMLESGLKFDCVTLASVIMA 380
Query: 228 CGGVDD-DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
C V G HA V+ LESD+ V C L+++Y + RVF+ I +++I
Sbjct: 381 C--VKSYRMEVGGAAHAYAVRNNLESDKTVFCSLIELYSSSGRIEQMRRVFDSI-RRRDI 437
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASG 316
A+W AM+ Y +G+ EA K LY M+ G
Sbjct: 438 ATWKAMICAYADHGMGSEALKLLYQMQLEG 467
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/275 (27%), Positives = 132/275 (48%), Gaps = 13/275 (4%)
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPA-- 117
G A + F +P ++ +WA +I + + + + +A M++ PA
Sbjct: 117 GAFGDAERAFSALPAKNAFAWAAVIGMWSRAGLHGKALAGYAAMLEAG-------VPADN 169
Query: 118 WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQ 177
+++ VLKAC + G+ VHG +K G + + SL++FYGK ++DA VF
Sbjct: 170 FVVPNVLKACAGLGLLGPGRAVHGYAWKAGVGNCVYVMSSLVDFYGKCGEVDDAREVFDV 229
Query: 178 LKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDD-DGN 236
+ V W + ++ G + + F EM E + + S L A ++ DG
Sbjct: 230 MPERTVVSWNSMLMGYIHNGRIDEAADLFYEMRVEGVLPTRVSVLSFLSASADLEVLDG- 288
Query: 237 CGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGY 296
GRQ HA V GLE D + +++ Y K L+ AE +FE +V+ ++I +WN M+ GY
Sbjct: 289 -GRQGHAVAVSSGLEMDLILGSSMINFYCKVGLVEAAEVIFEQMVE-RDIVTWNLMISGY 346
Query: 297 IRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
+++G +A + M SG++ + + +AC
Sbjct: 347 LQDGQTDKALTTCHRMLESGLKFDCVTLASVIMAC 381
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/262 (20%), Positives = 101/262 (38%), Gaps = 44/262 (16%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L+ + ++ + G ++ A +F++M RD +W +MI GY+ + +T M++
Sbjct: 305 LILGSSMINFYCKVGLVEAAEVIFEQMVERDIVTWNLMISGYLQDGQTDKALTTCHRMLE 364
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
L F + V+ ACV + ME+G H + + ++ SLI Y
Sbjct: 365 SG-----LKFDCVTLASVIMACVKSYRMEVGGAAHAYAVRNNLESDKTVFCSLIELYSSS 419
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
+E VF ++R + W A I G + +M E + + SVL
Sbjct: 420 GRIEQMRRVFDSIRRRDIATWKAMICAYADHGMGSEALKLLYQMQLEGTSPTAACWDSVL 479
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD--- 282
A +++ G +D DA F ++
Sbjct: 480 SA---------------------------FIRNGQLD---------DALSTFYEMLQTST 503
Query: 283 KKNIASWNAMLVGYIRNGLYVE 304
+ N+ +W+ ++ G RNG++ E
Sbjct: 504 RPNLRTWSLLISGLSRNGMHPE 525
Score = 42.0 bits (97), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 55/129 (42%), Gaps = 9/129 (6%)
Query: 41 NIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM----PLRDFNSWAVMIVGYVDVADYQEC 96
PT + +L + GQLD A F EM + +W+++I G + E
Sbjct: 467 GTSPTAACWDSVLSAFIRNGQLDDALSTFYEMLQTSTRPNLRTWSLLISGLSRNGMHPEV 526
Query: 97 ITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTG 156
+ L +M + + +F A ++ A V + GK +H + K G + S+
Sbjct: 527 MNLCCKMQEVEPAPSPTIFSAALLAVKSAASV-----QYGKAMHACIVKKGLLLSKSVVQ 581
Query: 157 SLINFYGKF 165
SL+N YG F
Sbjct: 582 SLLNMYGSF 590
>gi|124360227|gb|ABN08240.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 687
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 83/288 (28%), Positives = 142/288 (49%), Gaps = 8/288 (2%)
Query: 44 PTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEM 103
P+ L L RL+ + ++ G + ARQLFD +P D + + +I E I +++ +
Sbjct: 11 PSHLGL-RLIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSL 69
Query: 104 MKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYG 163
+R + VF A KAC + + K+VH + G ++ + +LI+ YG
Sbjct: 70 QERGIKPDMPVFLA-----AAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYG 124
Query: 164 KFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSS 223
K +C+E A VF L + V WT+ + G + + F+EMG +K N T SS
Sbjct: 125 KCKCVEGARRVFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSS 184
Query: 224 VLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
+L AC + D + G+++H V+ G+ + +V LV +Y KC +R+A VF+L+
Sbjct: 185 ILPACAELKDLKS-GKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLM-PH 242
Query: 284 KNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
+++ SWN +L Y +N Y + M G++ E+ N + C
Sbjct: 243 RDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGC 290
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/292 (22%), Positives = 119/292 (40%), Gaps = 54/292 (18%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEM-- 103
L + L+ ++ C + AR +FD MP RD SW ++ Y +Y++ +LF +M
Sbjct: 214 LFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSR 273
Query: 104 ----------------------------MKRKKGHMLLVFPAWIIVCVLKACVCTMNMEL 135
M RK M I +L AC + N+ +
Sbjct: 274 DGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSILPACSFSENLRM 333
Query: 136 GKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCR 195
GK++H +F+ +++ T +L+ Y K L + VF ++R + V W I+ N
Sbjct: 334 GKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRKDVVAWNTMIIANAM 393
Query: 196 EGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIG------ 249
G+ + F +M R++ NS TF+ VL C H+ +V+ G
Sbjct: 394 HGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCS------------HSRLVEEGVQIFNS 441
Query: 250 ------LESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
+E D +VD+Y + L +A + + + + ++W A+L
Sbjct: 442 MGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAA 493
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 78/362 (21%), Positives = 144/362 (39%), Gaps = 45/362 (12%)
Query: 8 ITTDM--YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTA 65
I DM + K C D+ E+ + R + + N L+ + C ++ A
Sbjct: 74 IKPDMPVFLAAAKACAVSGDALRVKEVHDDA-TRCGVMSDVFVGNALIHAYGKCKCVEGA 132
Query: 66 RQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLK 125
R++FD++ +RD SW + YV ++ + +F EM G + + +L
Sbjct: 133 RRVFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREM-----GWSGVKPNPMTVSSILP 187
Query: 126 ACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVV 185
AC +++ GK++HG + G N+ + +L++ Y K + +A VF + + V
Sbjct: 188 ACAELKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVS 247
Query: 186 WTA----------------------------------KIVNNCRE-GHFHQVFNDFKEMG 210
W ++ C E G + F++M
Sbjct: 248 WNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQ 307
Query: 211 RERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLL 270
+ K N T SS+L AC ++ G+++H + + D L+ MY KC L
Sbjct: 308 KMGFKPNEITISSILPAC-SFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDL 366
Query: 271 RDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIA 330
+ VF+++ +K++ +WN M++ +G EA M S +Q +
Sbjct: 367 NLSRNVFDMM-RRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSG 425
Query: 331 CS 332
CS
Sbjct: 426 CS 427
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 68/134 (50%), Gaps = 5/134 (3%)
Query: 201 QVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGL 260
++++ +E G IK + F + KAC V D +++H + + G+ SD +V L
Sbjct: 64 KIYSSLQERG---IKPDMPVFLAAAKACA-VSGDALRVKEVHDDATRCGVMSDVFVGNAL 119
Query: 261 VDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQ 320
+ YGKC+ + A RVF+ +V +++ SW ++ Y++ G + M SG++
Sbjct: 120 IHAYGKCKCVEGARRVFDDLV-VRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPN 178
Query: 321 ESLINDLRIACSSI 334
++ + AC+ +
Sbjct: 179 PMTVSSILPACAEL 192
>gi|302793011|ref|XP_002978271.1| hypothetical protein SELMODRAFT_465 [Selaginella moellendorffii]
gi|300154292|gb|EFJ20928.1| hypothetical protein SELMODRAFT_465 [Selaginella moellendorffii]
Length = 680
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 90/287 (31%), Positives = 142/287 (49%), Gaps = 11/287 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPL-RDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGH 110
LL M+V CG +++AR+LFD M + R+ W VMI YV E + LF KK
Sbjct: 1 LLGMYVRCGSVESARKLFDSMAVERNGECWTVMISAYVRRGWINEALLLF------KKSL 54
Query: 111 MLLVFPA-WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNI--SLTGSLINFYGKFRC 167
+ V P+ + +L AC +++ GK++H LL + G +I SL SLI YGK
Sbjct: 55 LEGVRPSEGTFIALLHACSRPASLDQGKKLHRLLEEAGFQESIAPSLATSLIKMYGKCGS 114
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
L++A V +++ + +WT I + G + F K M E + + TF +VL+A
Sbjct: 115 LDEAWKVMEKIESRDVELWTVMIASLSHFGKLDRAFELLKRMDLEGDRPSKMTFMAVLRA 174
Query: 228 CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
C + G +H I + GLESD V LV+MY + + A+ VF I + ++++
Sbjct: 175 CKDHPEARQVGGVLHGLIRERGLESDVGVGTSLVNMYARWGDAQQAQEVFSQI-EARDVS 233
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
SWN +L Y R +A M G++ +N + C+S+
Sbjct: 234 SWNCLLAAYSRCSRQEQALVLYREMMLEGVKPDRLTLNTVIDVCASL 280
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 73/312 (23%), Positives = 139/312 (44%), Gaps = 12/312 (3%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
+ +++ C ++ +L+ + + ++ + L+ M+ G A+++F ++
Sbjct: 168 FMAVLRACKDHPEARQVGGVLHGLIRERGLESDVGVGTSLVNMYARWGDAQQAQEVFSQI 227
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIV-CVLKACVCTM 131
RD +SW ++ Y + ++ + L+ EMM V P + + V+ C
Sbjct: 228 EARDVSSWNCLLAAYSRCSRQEQALVLYREMMLEG------VKPDRLTLNTVIDVCASLK 281
Query: 132 NMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIV 191
++E G ++H + G + ++ L +LI FYG+ LE A +F L + V W I
Sbjct: 282 DLEQGSRIHQQIASSGFASDLMLDTALITFYGRCGKLEAALEIFEALPARDNVTWNTMIA 341
Query: 192 NNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLE 251
+ F+ M +E + + T +VL CG V + + +H+ + + G E
Sbjct: 342 SLNDHSSPEAAMGFFQRMQQEGMAPSRVTLLTVLGLCGSVGE----AKLVHSCVRESGFE 397
Query: 252 SDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYL 311
D V+ L+ YG+C L A +FE + +K +SWNAM+ Y G A + +
Sbjct: 398 QDSEVKNTLITAYGRCGGLPQALEIFEAL-PRKIESSWNAMMGAYAAQGKPRAALELFHR 456
Query: 312 MKASGIQIQESL 323
M IQ S+
Sbjct: 457 MVKLEQMIQPSV 468
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 76/309 (24%), Positives = 131/309 (42%), Gaps = 10/309 (3%)
Query: 32 LLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVA 91
LL + +I P+L L+ M+ CG LD A ++ +++ RD W VMI
Sbjct: 87 LLEEAGFQESIAPSLA--TSLIKMYGKCGSLDEAWKVMEKIESRDVELWTVMIASLSHFG 144
Query: 92 DYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNM-ELGKQVHGLLFKLGSSR 150
L M + F A VL+AC ++G +HGL+ + G
Sbjct: 145 KLDRAFELLKRMDLEGDRPSKMTFMA-----VLRACKDHPEARQVGGVLHGLIRERGLES 199
Query: 151 NISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMG 210
++ + SL+N Y ++ + A VFSQ++ + W + R Q ++EM
Sbjct: 200 DVGVGTSLVNMYARWGDAQQAQEVFSQIEARDVSSWNCLLAAYSRCSRQEQALVLYREMM 259
Query: 211 RERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLL 270
E +K + T ++V+ C + D G ++H I G SD + L+ YG+C L
Sbjct: 260 LEGVKPDRLTLNTVIDVCASLKDLEQ-GSRIHQQIASSGFASDLMLDTALITFYGRCGKL 318
Query: 271 RDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIA 330
A +FE + + N+ +WN M+ + A F M+ G+ + +
Sbjct: 319 EAALEIFEALPARDNV-TWNTMIASLNDHSSPEAAMGFFQRMQQEGMAPSRVTLLTVLGL 377
Query: 331 CSSISASKI 339
C S+ +K+
Sbjct: 378 CGSVGEAKL 386
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/292 (23%), Positives = 125/292 (42%), Gaps = 19/292 (6%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L+ L+ + CG+L+ A ++F+ +P RD +W MI D + + + F M +
Sbjct: 302 LMLDTALITFYGRCGKLEAALEIFEALPARDNVTWNTMIASLNDHSSPEAAMGFFQRMQQ 361
Query: 106 RKKGHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
+ P+ + ++ VL C +L VH + + G ++ + +LI YG+
Sbjct: 362 EG------MAPSRVTLLTVLGLCGSVGEAKL---VHSCVRESGFEQDSEVKNTLITAYGR 412
Query: 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGR--ERIKKNSYTFS 222
L A +F L R W A + +G F M + + I+ + T
Sbjct: 413 CGGLPQALEIFEALPRKIESSWNAMMGAYAAQGKPRAALELFHRMVKLEQMIQPSVSTII 472
Query: 223 SVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282
L +C + D G+ + ++I + +E D +VQ +VDM +C L DA F +
Sbjct: 473 LALNSCRSLAD----GKLVISSIPESLVEEDGFVQAAMVDMLARCGSLDDASEFFHKLGK 528
Query: 283 KKNIASWNAMLVGYIRNGLYVEATKFL--YLMKASGIQIQESLINDLRIACS 332
K+ W M+ + R+G A L+ G + +L++ L ACS
Sbjct: 529 NKDTVLWTTMVAAFARHGHSARALGLFEAMLLDGGGSPDEVTLVSVLS-ACS 579
>gi|255565109|ref|XP_002523547.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223537254|gb|EEF38886.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 555
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 80/283 (28%), Positives = 136/283 (48%), Gaps = 6/283 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N LLL + + G L A+++FDEM RD SW ++ + Y + + LF EM R
Sbjct: 49 NTLLLFYGNTGYLSDAKKVFDEMLERDVVSWNTLLGAFSVNGFYLKALDLFYEMNLRSGF 108
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+V +V VL C + + ++H + K+G ++L +L++ YGK L+
Sbjct: 109 RPNMV----TVVSVLPVCAALEDEVVASEIHCYVVKIGLDSQVTLCNALVDVYGKCGNLK 164
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
+ VF ++ N V W A I + H F+ M E +K NS T +S+L
Sbjct: 165 SSRRVFDEMMERNEVSWNAIITSLAYMEHNKDALEAFRLMINEEVKPNSVTIASILPVLV 224
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ + + G+++H ++ G+ESD ++ L+DMY K A VF L+ + KN+ SW
Sbjct: 225 EL-EHFDLGKEIHGFSLRFGIESDVFISNSLIDMYAKSGHSTQASVVFHLMTE-KNVVSW 282
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
NAM+ + +N + A + + M+ G + AC+
Sbjct: 283 NAMVANFAQNRFELAAIELVRQMQTDGAIPNPVTFTNALPACA 325
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 81/320 (25%), Positives = 144/320 (45%), Gaps = 11/320 (3%)
Query: 20 CTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNS 79
C +D A E+ ++ K + + + N L+ ++ CG L ++R++FDEM R+ S
Sbjct: 122 CAALEDEVVASEIHCYVVK-IGLDSQVTLCNALVDVYGKCGNLKSSRRVFDEMMERNEVS 180
Query: 80 WAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI-IVCVLKACVCTMNMELGKQ 138
W +I + ++ + F M+ + V P + I +L V + +LGK+
Sbjct: 181 WNAIITSLAYMEHNKDALEAFRLMINEE------VKPNSVTIASILPVLVELEHFDLGKE 234
Query: 139 VHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGH 198
+HG + G ++ ++ SLI+ Y K A VF + N V W A + N +
Sbjct: 235 IHGFSLRFGIESDVFISNSLIDMYAKSGHSTQASVVFHLMTEKNVVSWNAMVANFAQNRF 294
Query: 199 FHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQC 258
++M + N TF++ L AC + G+++HA ++G D++V
Sbjct: 295 ELAAIELVRQMQTDGAIPNPVTFTNALPACARMGF-LRPGKEIHARAFRMGCYFDQFVSN 353
Query: 259 GLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
L DMY KC L A VF + ++ S+N ++VGY + E+ M G++
Sbjct: 354 ALTDMYAKCGFLNLARNVFN--ISLRDEVSYNILIVGYSQTTNSSESLSLFLEMGLVGME 411
Query: 319 IQESLINDLRIACSSISASK 338
+ AC+S+ A K
Sbjct: 412 RDVVSYMGVIAACASLVALK 431
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 96/172 (55%), Gaps = 3/172 (1%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
VLKAC +N++ G ++HG +FKLG ++ + +L+ FYG L DA VF ++ +
Sbjct: 16 VLKACADNLNVQKGMEIHGCVFKLGFDFDVFVGNTLLLFYGNTGYLSDAKKVFDEMLERD 75
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMG-RERIKKNSYTFSSVLKACGGVDDDGNCGRQM 241
V W + G + + + F EM R + N T SVL C ++D+ ++
Sbjct: 76 VVSWNTLLGAFSVNGFYLKALDLFYEMNLRSGFRPNMVTVVSVLPVCAALEDE-VVASEI 134
Query: 242 HANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
H +VKIGL+S + LVD+YGKC L+ + RVF+ ++++ + SWNA++
Sbjct: 135 HCYVVKIGLDSQVTLCNALVDVYGKCGNLKSSRRVFDEMMERNEV-SWNAII 185
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 95/188 (50%), Gaps = 8/188 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L M+ CG L+ AR +F+ + LRD S+ ++IVGY + E ++LF EM G
Sbjct: 353 NALTDMYAKCGFLNLARNVFN-ISLRDEVSYNILIVGYSQTTNSSESLSLFLEM-----G 406
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ + + V+ AC + ++ G+++H L+ + +I + SL++FY K ++
Sbjct: 407 LVGMERDVVSYMGVIAACASLVALKQGEEIHALVVRKNLHMHIFIANSLLDFYTKCGKID 466
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC- 228
A +F ++ + W I+ G N F+ M + ++ +S ++ +VL AC
Sbjct: 467 LACKIFYRISEKDAASWNTIILGVGMLGELEAAINLFEAMREDGVEYDSVSYIAVLSACS 526
Query: 229 -GGVDDDG 235
GG+ + G
Sbjct: 527 HGGLVEKG 534
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 68/295 (23%), Positives = 128/295 (43%), Gaps = 10/295 (3%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R I+ + N L+ M+ G A +F M ++ SW M+ + Q
Sbjct: 241 RFGIESDVFISNSLIDMYAKSGHSTQASVVFHLMTEKNVVSWNAMVANFA-----QNRFE 295
Query: 99 LFA-EMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGS 157
L A E++++ + + P L AC + GK++H F++G + ++ +
Sbjct: 296 LAAIELVRQMQTDGAIPNPV-TFTNALPACARMGFLRPGKEIHARAFRMGCYFDQFVSNA 354
Query: 158 LINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKN 217
L + Y K L A VF+ + + V + IV + + + + F EMG ++++
Sbjct: 355 LTDMYAKCGFLNLARNVFN-ISLRDEVSYNILIVGYSQTTNSSESLSLFLEMGLVGMERD 413
Query: 218 SYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVF 277
++ V+ AC + G ++HA +V+ L ++ L+D Y KC + A ++F
Sbjct: 414 VVSYMGVIAACASLVALKQ-GEEIHALVVRKNLHMHIFIANSLLDFYTKCGKIDLACKIF 472
Query: 278 ELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
I +K+ ASWN +++G G A M+ G++ + ACS
Sbjct: 473 YRI-SEKDAASWNTIILGVGMLGELEAAINLFEAMREDGVEYDSVSYIAVLSACS 526
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 60/106 (56%), Gaps = 6/106 (5%)
Query: 209 MGRERIKKNSYTFSSVLKACGGVDDDGNC--GRQMHANIVKIGLESDEYVQCGLVDMYGK 266
M R I+ + +TF VLKAC D+ N G ++H + K+G + D +V L+ YG
Sbjct: 1 MVRNGIRPDDHTFPFVLKACA---DNLNVQKGMEIHGCVFKLGFDFDVFVGNTLLLFYGN 57
Query: 267 CRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLM 312
L DA++VF+ +++ +++ SWN +L + NG Y++A Y M
Sbjct: 58 TGYLSDAKKVFDEMLE-RDVVSWNTLLGAFSVNGFYLKALDLFYEM 102
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 5/100 (5%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R N+ + N LL + CG++D A ++F + +D SW +I+G + + + I
Sbjct: 442 RKNLHMHIFIANSLLDFYTKCGKIDLACKIFYRISEKDAASWNTIILGVGMLGELEAAIN 501
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQ 138
LF M R+ G + + + + VL AC +E GK+
Sbjct: 502 LFEAM--REDG---VEYDSVSYIAVLSACSHGGLVEKGKK 536
>gi|413923618|gb|AFW63550.1| hypothetical protein ZEAMMB73_399779 [Zea mays]
Length = 1118
Score = 124 bits (311), Expect = 6e-26, Method: Composition-based stats.
Identities = 92/312 (29%), Positives = 147/312 (47%), Gaps = 22/312 (7%)
Query: 33 LNHIRK---------RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVM 83
L H+RK R ++ L +N +L +V G L + +LF+ M RD +W+ M
Sbjct: 682 LGHVRKGQACHAYVVRNSLSYDLALVNAVLGFYVKIGDLQASMRLFEGMTDRDVITWSCM 741
Query: 84 IVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGL 142
I GYV D ++ EM+K + V P + +V VL+AC ++ E GK++H +
Sbjct: 742 IKGYVQHGDAHTGFRMYREMVKAR------VQPNSVTLVSVLQACALVVDAEEGKRLHRV 795
Query: 143 LFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQV 202
+G + + +L++ Y K C E+A +F ++ + + V W A I + +
Sbjct: 796 AVSIGCELELGVATALVDMYMKCSCHEEAMRLFHRMPKKDVVAWAAVIGGLTQNELPGES 855
Query: 203 FNDFKEMGRERIKKNSYTFSSVLKACG--GVDDDGNCGRQMHANIVKIGLESDEYVQCGL 260
+ FK M ++ T VL AC G + C +H +V+ G ++ +V L
Sbjct: 856 LHSFKCMLLNDHVPDAVTMVKVLAACSEFGGNRLAIC---LHGYLVRNGFNNNAFVAAAL 912
Query: 261 VDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQ 320
+D+Y KC L A RVFE + K+I W +M+ GY +GL EA M AS IQ
Sbjct: 913 LDLYSKCGDLDSAVRVFEGTTE-KDIVVWGSMIAGYGAHGLGQEAVALYQRMIASSIQPN 971
Query: 321 ESLINDLRIACS 332
+ ACS
Sbjct: 972 NVTFLSVLSACS 983
Score = 97.8 bits (242), Expect = 6e-18, Method: Composition-based stats.
Identities = 68/250 (27%), Positives = 120/250 (48%), Gaps = 6/250 (2%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
++ M+ CG + A + + D ++ GY +E + FA + G
Sbjct: 608 IVQMYSRCGDMAGAINAYGMLEKPDIVLRTSVVTGYEQNGMAEEALEFFA---RNVVGQG 664
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+LV P +V V+ A ++ G+ H + + S +++L +++ FY K L+ +
Sbjct: 665 VLVTPV-TLVSVMSAAAQLGHVRKGQACHAYVVRNSLSYDLALVNAVLGFYVKIGDLQAS 723
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
+F + + + W+ I + G H F ++EM + R++ NS T SVL+AC V
Sbjct: 724 MRLFEGMTDRDVITWSCMIKGYVQHGDAHTGFRMYREMVKARVQPNSVTLVSVLQACALV 783
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
D G+++H V IG E + V LVDMY KC +A R+F + KK++ +W A
Sbjct: 784 -VDAEEGKRLHRVAVSIGCELELGVATALVDMYMKCSCHEEAMRLFHRM-PKKDVVAWAA 841
Query: 292 MLVGYIRNGL 301
++ G +N L
Sbjct: 842 VIGGLTQNEL 851
Score = 72.4 bits (176), Expect = 3e-10, Method: Composition-based stats.
Identities = 67/246 (27%), Positives = 110/246 (44%), Gaps = 13/246 (5%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M++ C + A +LF MP +D +WA +I G E + F M+
Sbjct: 811 LVDMYMKCSCHEEAMRLFHRMPKKDVVAWAAVIGGLTQNELPGESLHSFKCMLLNDH--- 867
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
V A +V VL AC L +HG L + G + N + +L++ Y K L+ A
Sbjct: 868 --VPDAVTMVKVLAACSEFGGNRLAICLHGYLVRNGFNNNAFVAAALLDLYSKCGDLDSA 925
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--- 228
VF + VVW + I G + ++ M I+ N+ TF SVL AC
Sbjct: 926 VRVFEGTTEKDIVVWGSMIAGYGAHGLGQEAVALYQRMIASSIQPNNVTFLSVLSACSHS 985
Query: 229 GGVDDDGNCGRQMHANIVKI-GLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
G V + G Q+ ++ ++ G+ + Q +VD+ G+ L++A RV + +
Sbjct: 986 GLVQE----GIQIFDSMTQVFGVVPNAEHQSAMVDLLGRAGELQEAIRVIRDMDGRAVAH 1041
Query: 288 SWNAML 293
+W A+L
Sbjct: 1042 TWCALL 1047
Score = 48.1 bits (113), Expect = 0.006, Method: Composition-based stats.
Identities = 29/100 (29%), Positives = 55/100 (55%), Gaps = 3/100 (3%)
Query: 211 RERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLES-DEYVQCGLVDMYGKCRL 269
R R++++ +T S +L+AC + + GR +HA V+ S D +V +V MY +C
Sbjct: 559 RLRVRRDGFTLSLLLRACTALPSLTH-GRAVHAAAVRSCTASEDAFVATAIVQMYSRCGD 617
Query: 270 LRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFL 309
+ A + ++ +K +I +++ GY +NG+ EA +F
Sbjct: 618 MAGAINAYGML-EKPDIVLRTSVVTGYEQNGMAEEALEFF 656
>gi|223948379|gb|ACN28273.1| unknown [Zea mays]
Length = 648
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 94/322 (29%), Positives = 150/322 (46%), Gaps = 15/322 (4%)
Query: 17 IKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL-R 75
+K C D+A + + + R + + + L+L++ G++ AR++FD L
Sbjct: 66 LKACCVVGDTAAGVGI-HGLCVRAGYQEHDVVASSLVLVYSKGGRIGDARRVFDGAGLGS 124
Query: 76 DFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMEL 135
+W M+ GY ++ + +F EM + + H F +LKAC
Sbjct: 125 GIATWNAMVSGYAHAGHGRDALLVFREMRRHEGQHQPDEF---TFASLLKACSGLGATRE 181
Query: 136 GKQVHGLLFKLG--SSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNN 193
G QVH + G ++ N L G+L++ Y K R L A VF +L+R N + WTA +V +
Sbjct: 182 GAQVHAAMTASGFSTASNAILAGALVDMYVKCRRLPVAMQVFERLERKNVIQWTAVVVGH 241
Query: 194 CREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDD---GNCGRQMHANIVKIGL 250
+EG + F+ R + +S+ SSV+ GV D GRQ+H +K
Sbjct: 242 AQEGQVTEALELFRRFWRSGARPDSHVLSSVV----GVLADFALVEQGRQVHCYGIKDPT 297
Query: 251 ESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLY 310
+D +VDMY KC L +AER+F + N+ SW M+ G ++GL EA
Sbjct: 298 GTDVSAGNSIVDMYLKCGLPDEAERMFREM-RAPNVVSWTTMVNGLGKHGLGREAVALFE 356
Query: 311 LMKASGIQIQESLINDLRIACS 332
M+A G++ E L ACS
Sbjct: 357 EMRAGGVEPDEVTYLALLSACS 378
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 82/278 (29%), Positives = 132/278 (47%), Gaps = 11/278 (3%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+V CG+LD A ++F M R+ SW ++VG++ D C+ L EM +
Sbjct: 1 MYVKCGELDLACEVFGGMRDRNVVSWTALMVGFLRHGDATGCLRLLGEMRTASEA----A 56
Query: 115 FPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFV 174
+ + LKAC + G +HGL + G + + SL+ Y K + DA V
Sbjct: 57 PNEYTLSASLKACCVVGDTAAGVGIHGLCVRAGYQEHDVVASSLVLVYSKGGRIGDARRV 116
Query: 175 FSQLKRHNTVV-WTAKIVNNCREGHFHQVFNDFKEMGRE--RIKKNSYTFSSVLKACGGV 231
F + + W A + GH F+EM R + + + +TF+S+LKAC G+
Sbjct: 117 FDGAGLGSGIATWNAMVSGYAHAGHGRDALLVFREMRRHEGQHQPDEFTFASLLKACSGL 176
Query: 232 DDDGNCGRQMHANIVKIGLE--SDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
G Q+HA + G S+ + LVDMY KCR L A +VFE + ++KN+ W
Sbjct: 177 GATRE-GAQVHAAMTASGFSTASNAILAGALVDMYVKCRRLPVAMQVFERL-ERKNVIQW 234
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDL 327
A++VG+ + G EA + SG + +++ +
Sbjct: 235 TAVVVGHAQEGQVTEALELFRRFWRSGARPDSHVLSSV 272
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/251 (22%), Positives = 108/251 (43%), Gaps = 13/251 (5%)
Query: 47 LFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK- 105
+ L+ M+V C +L A Q+F+ + ++ W ++VG+ E + LF +
Sbjct: 201 ILAGALVDMYVKCRRLPVAMQVFERLERKNVIQWTAVVVGHAQEGQVTEALELFRRFWRS 260
Query: 106 --RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYG 163
R H+L +V VL +E G+QVH K + ++S S+++ Y
Sbjct: 261 GARPDSHVLSS-----VVGVLADFAL---VEQGRQVHCYGIKDPTGTDVSAGNSIVDMYL 312
Query: 164 KFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSS 223
K ++A+ +F +++ N V WT + + G + F+EM ++ + T+ +
Sbjct: 313 KCGLPDEAERMFREMRAPNVVSWTTMVNGLGKHGLGREAVALFEEMRAGGVEPDEVTYLA 372
Query: 224 VLKACGGVDDDGNCGRQMHA-NIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282
+L AC C R + E+ C +VD+ G+ LR+A + +
Sbjct: 373 LLSACSHAGLVDECRRYFSCIRRDRTVRPKAEHYAC-MVDLLGRAGELREARDLIRTMPM 431
Query: 283 KKNIASWNAML 293
+ + W +L
Sbjct: 432 EPTVGVWQTLL 442
>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
Length = 920
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 73/267 (27%), Positives = 130/267 (48%), Gaps = 7/267 (2%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL ++V CG ++TA +F+ + W +M+V Y ++D + +F +M
Sbjct: 286 LLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPN 345
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+P C+L+ C CT +ELG+Q+H L K G ++ ++G LI+ Y K+ CL+ A
Sbjct: 346 QFTYP-----CILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKA 400
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
+ L++ + V WT+ I + + FKEM + ++ +S AC G+
Sbjct: 401 RKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGI 460
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
G Q+HA + G +D + LV++Y +C +A +F I K I +WN
Sbjct: 461 KAMRQ-GLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIEHKDEI-TWNG 518
Query: 292 MLVGYIRNGLYVEATKFLYLMKASGIQ 318
++ G+ ++ LY +A M +G +
Sbjct: 519 LISGFGQSRLYKQALMVFMKMGQAGAK 545
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 88/326 (26%), Positives = 147/326 (45%), Gaps = 16/326 (4%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRK---RVNIKPTLLFLNRLLLMHVSCGQLDTARQLF 69
Y C+++ CT G EL I + + + L+ M+ G LD AR++
Sbjct: 349 YPCILRTCT----CTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKIL 404
Query: 70 DEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI-IVCVLKACV 128
+ + RD SW MI GYV +E + F EM V+P I + AC
Sbjct: 405 EMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQD------CGVWPDNIGLASAASACA 458
Query: 129 CTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTA 188
M G Q+H ++ G + +IS+ +L+N Y + E+A +F +++ + + W
Sbjct: 459 GIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIEHKDEITWNG 518
Query: 189 KIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKI 248
I + + Q F +MG+ K N +TF S + A + D G+Q+H VK
Sbjct: 519 LISGFGQSRLYKQALMVFMKMGQAGAKYNVFTFISAISALANLADIKQ-GKQVHGRAVKT 577
Query: 249 GLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKF 308
G S+ V L+ +YGKC + DA+ +F + +N SWN ++ ++G +EA
Sbjct: 578 GHTSETEVANALISLYGKCGSIEDAKMIFSEM-SLRNEVSWNTIITSCSQHGRGLEALDL 636
Query: 309 LYLMKASGIQIQESLINDLRIACSSI 334
MK G++ + + ACS +
Sbjct: 637 FDQMKQEGLKPNDVTFIGVLAACSHV 662
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 79/293 (26%), Positives = 129/293 (44%), Gaps = 44/293 (15%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
N L+ H CG + A Q+FDEM L +C+T
Sbjct: 213 FNTLISGHAQCGHGECALQIFDEMQLSGLRP---------------DCVT---------- 247
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+ +L AC +++ GKQ+H L K G S + GSL++ Y K +
Sbjct: 248 -----------VASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDI 296
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
E A +F+ R N V+W +V + + F F +M I N +T+ +L+ C
Sbjct: 297 ETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTC 356
Query: 229 ---GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
G ++ G Q+H+ +K G ESD YV L+DMY K L A ++ E++ +K++
Sbjct: 357 TCTGQIE----LGEQIHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEML-EKRD 411
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASK 338
+ SW +M+ GY+++ EA M+ G+ + AC+ I A +
Sbjct: 412 VVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMR 464
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 76/276 (27%), Positives = 128/276 (46%), Gaps = 9/276 (3%)
Query: 47 LFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR 106
L N L+ ++ G + ARQ+F E+ RD SW M+ GY +E L+++M
Sbjct: 79 LIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQSGLGKEAFRLYSQM--- 135
Query: 107 KKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
H V P +++ VL AC G+ +H ++K + +LI Y F
Sbjct: 136 ---HWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGF 192
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
+ A+ VF + + V + I + + GH F EM ++ + T +S+L
Sbjct: 193 GSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLL 252
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
AC V D G+Q+H+ ++K G+ D + L+D+Y KC + A +F L D+ N
Sbjct: 253 AACASVGDLQK-GKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNL-GDRTN 310
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQE 321
+ WN MLV Y + ++ + M+A+GI +
Sbjct: 311 VVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQ 346
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 117/246 (47%), Gaps = 9/246 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ ++ CG+ + A LF E+ +D +W +I G+ Y++ + +F +M +
Sbjct: 486 NTLVNLYARCGRSEEAFSLFREIEHKDEITWNGLISGFGQSRLYKQALMVFMKMGQAGAK 545
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ + F + + A +++ GKQVHG K G + + +LI+ YGK +E
Sbjct: 546 YNVFTF-----ISAISALANLADIKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIE 600
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
DA +FS++ N V W I + + G + + F +M +E +K N TF VL AC
Sbjct: 601 DAKMIFSEMSLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACS 660
Query: 230 --GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
G+ ++G + +N+ + D Y C +VD+ G+ L A R + + N
Sbjct: 661 HVGLVEEGLSYFKSMSNVYGLNPIPDHYA-C-VVDILGRAGQLDRARRFVDEMPITANAM 718
Query: 288 SWNAML 293
W +L
Sbjct: 719 IWRTLL 724
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 98/223 (43%), Gaps = 17/223 (7%)
Query: 120 IVCVLKACVCTMN-MELGKQVHG--LLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFS 176
+ C L+AC N L ++H ++ LG+ R I LI+ Y K + A VF
Sbjct: 45 LTCALQACRGRGNRWPLVLEIHATSVVRGLGADRLIG--NLLIDLYAKNGLVWQARQVFK 102
Query: 177 QLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGN 236
+L + V W A + + G + F + +M + Y SSVL AC G
Sbjct: 103 ELSSRDHVSWVAMLSGYAQSGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSAC----TKGK 158
Query: 237 C---GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVF--ELIVDKKNIASWNA 291
GR +HA + K S+ +V L+ +Y + AERVF L D+ ++N
Sbjct: 159 LFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDR---VTFNT 215
Query: 292 MLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
++ G+ + G A + M+ SG++ + L AC+S+
Sbjct: 216 LISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASV 258
>gi|410109993|gb|AFV61076.1| pentatricopeptide repeat-containing protein 81, partial [Lantana
micrantha]
Length = 390
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 80/289 (27%), Positives = 140/289 (48%), Gaps = 10/289 (3%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMP-LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRK 107
LN + + CG ++ A+++FD RD +W ++ Y++ + +F EM+K++
Sbjct: 101 LNATITAYAECGCIEDAKRVFDSSDGYRDLVTWNSILAAYLEHNLEEYGFNIFLEMVKQR 160
Query: 108 KGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF-- 165
L A+ + V+ AC LGK +HGL K G + ++ +L++ Y K
Sbjct: 161 -----LEMDAYTLSSVISACFEDTQQSLGKSLHGLAIKKGLDQVTQISNALVSMYLKSNN 215
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
R +EDA +F + + V W + + G F+ + + + + YTF++VL
Sbjct: 216 RNMEDALKIFEHINIKDLVSWNTILTGLSQNGLSENALRLFQNIHLDHLVTDQYTFAAVL 275
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
++C + + GRQ+H +VK G E +EYV L+ MY KC ++ DA FE + K+
Sbjct: 276 RSCSDLAT-LHLGRQIHVLVVKSGFEGNEYVASALIFMYSKCGIIEDARESFESSL-KET 333
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
+WN+++ Y ++G A YLM I++ ACS I
Sbjct: 334 SVTWNSIIFAYAQHGQGKIALDLFYLMTERRIKLDHVTFVAALTACSHI 382
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 77/262 (29%), Positives = 131/262 (50%), Gaps = 12/262 (4%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEM-MKRKKGH 110
L M+ C +++ A ++F+ M R+ SW +I GY ++A+ + C+ LF M M+ +
Sbjct: 3 LFDMYAKCRRVEDANKVFNYMRERNAVSWNALIGGYAEMANLERCVMLFVGMEMEGVRVD 62
Query: 111 MLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
P ++ + A + +L +Q+HG + K G ++ + I Y + C+ED
Sbjct: 63 DATFAP--LLTLLYDAEL----YDLMRQLHGKIMKRGLEHENTVLNATITAYAECGCIED 116
Query: 171 ADFVF-SQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A VF S + V W + + FN F EM ++R++ ++YT SSV+ AC
Sbjct: 117 AKRVFDSSDGYRDLVTWNSILAAYLEHNLEEYGFNIFLEMVKQRLEMDAYTLSSVISACF 176
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKC--RLLRDAERVFELIVDKKNIA 287
D + G+ +H +K GL+ + LV MY K R + DA ++FE I + K++
Sbjct: 177 E-DTQQSLGKSLHGLAIKKGLDQVTQISNALVSMYLKSNNRNMEDALKIFEHI-NIKDLV 234
Query: 288 SWNAMLVGYIRNGLYVEATKFL 309
SWN +L G +NGL A +
Sbjct: 235 SWNTILTGLSQNGLSENALRLF 256
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 73/146 (50%), Gaps = 1/146 (0%)
Query: 156 GSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIK 215
+L + Y K R +EDA+ VF+ ++ N V W A I + + F M E ++
Sbjct: 1 SALFDMYAKCRRVEDANKVFNYMRERNAVSWNALIGGYAEMANLERCVMLFVGMEMEGVR 60
Query: 216 KNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAER 275
+ TF+ +L + + RQ+H I+K GLE + V + Y +C + DA+R
Sbjct: 61 VDDATFAPLLTLLYDAEL-YDLMRQLHGKIMKRGLEHENTVLNATITAYAECGCIEDAKR 119
Query: 276 VFELIVDKKNIASWNAMLVGYIRNGL 301
VF+ +++ +WN++L Y+ + L
Sbjct: 120 VFDSSDGYRDLVTWNSILAAYLEHNL 145
>gi|414869047|tpg|DAA47604.1| TPA: putative pentatricopeptide repeat family protein [Zea mays]
Length = 694
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 85/302 (28%), Positives = 141/302 (46%), Gaps = 12/302 (3%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R + + + LL ++ CG+L AR++FD MP+R+ SW +I GY D E +
Sbjct: 119 RCGLADNVFPASALLDVYAKCGRLGDARRVFDGMPVRNIVSWNAIIAGYTDSRKPAEAME 178
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN-MELGKQVHGLLFKLGSSRNISLTGS 157
LF EM + P VL A + L +Q+HG + K GS+ + +
Sbjct: 179 LFLEMQRVGS------VPDGTTFAVLLATIAGPRWYSLMRQLHGKIVKYGSALGLVALNA 232
Query: 158 LINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRER-IKK 216
I Y + L D+ +F ++ + + W + + G + F M RE I+
Sbjct: 233 AITAYSQCDALADSRKIFDGIESRDLISWNSMLGAYAYHGLDDEAMRFFVRMMRESGIQP 292
Query: 217 NSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCR---LLRDA 273
+ Y+F+S + C D GR +H+ ++K GLE V ++ MY + ++ DA
Sbjct: 293 DMYSFTSAISVCSEHGCDDQQGRSIHSLVIKFGLEGVTPVCNAMIAMYTRFADNCMMEDA 352
Query: 274 ERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSS 333
F +V K + SWN+ML GY +GL +A KF M+A I+ E ++ +CS
Sbjct: 353 YNCFSSLVFKDAV-SWNSMLTGYSHHGLSSDALKFFRCMRAENIRTDEFGLSAALRSCSD 411
Query: 334 IS 335
++
Sbjct: 412 LA 413
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 123/260 (47%), Gaps = 12/260 (4%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L+ LN + + C L +R++FD + RD SW M+ Y E + F MM
Sbjct: 227 LVALNAAITAYSQCDALADSRKIFDGIESRDLISWNSMLGAYAYHGLDDEAMRFFVRMM- 285
Query: 106 RKKGHM--LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYG 163
R+ G + F + I VC C + + G+ +H L+ K G + ++I Y
Sbjct: 286 RESGIQPDMYSFTSAISVCSEHGC----DDQQGRSIHSLVIKFGLEGVTPVCNAMIAMYT 341
Query: 164 KFR---CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYT 220
+F +EDA FS L + V W + + G F+ M E I+ + +
Sbjct: 342 RFADNCMMEDAYNCFSSLVFKDAVSWNSMLTGYSHHGLSSDALKFFRCMRAENIRTDEFG 401
Query: 221 FSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELI 280
S+ L++C + GRQ+H+ +V+ G S+++V L+ MY KC +L DA + FE
Sbjct: 402 LSAALRSCSDLAVL-RLGRQVHSLVVQSGFASNDFVSSSLIFMYSKCGVLGDARKSFEE- 459
Query: 281 VDKKNIASWNAMLVGYIRNG 300
DK + WN+M+ GY ++G
Sbjct: 460 ADKSSSVPWNSMMFGYAQHG 479
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 76/270 (28%), Positives = 122/270 (45%), Gaps = 9/270 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N+LL + + G L AR++FDE+P D SW ++ +V +++ L M R
Sbjct: 30 NQLLTAYSATG-LAAARRVFDEIPHPDAASWNSLLAAHVAAGAHRDAWRLLRAMHARG-- 86
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
L + + L++ ELG Q+ + G + N+ +L++ Y K L
Sbjct: 87 ---LAASTFALGSALRSAAAARRPELGAQLQSFSVRCGLADNVFPASALLDVYAKCGRLG 143
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
DA VF + N V W A I + F EM R + TF+ +L
Sbjct: 144 DARRVFDGMPVRNIVSWNAIIAGYTDSRKPAEAMELFLEMQRVGSVPDGTTFAVLLATIA 203
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
G + RQ+H IVK G + Y +C L D+ ++F+ I + +++ SW
Sbjct: 204 G-PRWYSLMRQLHGKIVKYGSALGLVALNAAITAYSQCDALADSRKIFDGI-ESRDLISW 261
Query: 290 NAMLVGYIRNGLYVEATK-FLYLMKASGIQ 318
N+ML Y +GL EA + F+ +M+ SGIQ
Sbjct: 262 NSMLGAYAYHGLDDEAMRFFVRMMRESGIQ 291
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 105/238 (44%), Gaps = 17/238 (7%)
Query: 62 LDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLF----AEMMKRKKGHMLLVFPA 117
++ A F + +D SW M+ GY + + F AE ++ +
Sbjct: 349 MEDAYNCFSSLVFKDAVSWNSMLTGYSHHGLSSDALKFFRCMRAENIRTDE--------- 399
Query: 118 WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQ 177
+ + L++C + LG+QVH L+ + G + N ++ SLI Y K L DA F +
Sbjct: 400 FGLSAALRSCSDLAVLRLGRQVHSLVVQSGFASNDFVSSSLIFMYSKCGVLGDARKSFEE 459
Query: 178 LKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--GGVDDDG 235
+ ++V W + + + G V + F EM + + TF +++ A GG+ D+G
Sbjct: 460 ADKSSSVPWNSMMFGYAQHGQAQTVTDLFNEMLDLEVPLDHVTFVALITAYSHGGLVDEG 519
Query: 236 NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
+ KI + + Y CG VD+YG+ L A+ + E + + + W +L
Sbjct: 520 SEILNTMETRYKIPMRMEHYA-CG-VDLYGRAGQLDKAKELIESMPFQPDAIVWMTLL 575
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 74/177 (41%), Gaps = 4/177 (2%)
Query: 140 HGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHF 199
H L K G+S L + L A VF ++ + W + + + G
Sbjct: 15 HATLLKSGASSPTPWNQLLTAYSAT--GLAAARRVFDEIPHPDAASWNSLLAAHVAAGAH 72
Query: 200 HQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCG 259
+ + M + +++ S L++ G Q+ + V+ GL + +
Sbjct: 73 RDAWRLLRAMHARGLAASTFALGSALRSAAAARRP-ELGAQLQSFSVRCGLADNVFPASA 131
Query: 260 LVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASG 316
L+D+Y KC L DA RVF+ + +NI SWNA++ GY + EA + M+ G
Sbjct: 132 LLDVYAKCGRLGDARRVFDGM-PVRNIVSWNAIIAGYTDSRKPAEAMELFLEMQRVG 187
>gi|410109963|gb|AFV61061.1| pentatricopeptide repeat-containing protein 81, partial [Aloysia
citrodora]
Length = 391
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 81/290 (27%), Positives = 140/290 (48%), Gaps = 12/290 (4%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMP-LRDFNSWAVMIVGYVDVADYQEC-ITLFAEMMKR 106
LN + + CG ++ A+++FD RD +W M+ Y++ +EC +F EM+++
Sbjct: 97 LNATITAYAECGCIEDAKRVFDSSDGFRDLVTWNSMLAAYLEY-KLEECGFNIFLEMVRQ 155
Query: 107 KKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFY--GK 164
+ L A+ + ++ AC LGK +HGL+ K G + ++ +LI+ Y
Sbjct: 156 R-----LEMDAYTLSSIISACFEDSQQSLGKSLHGLVIKKGLDQVTQISNALISMYLRSN 210
Query: 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
R +EDA +F + + V W + + G F+ + + + + YTF++V
Sbjct: 211 SRNVEDAFKIFEHITVKDLVSWNTILTGLSQNGLSEIALRLFQNIHLDHLVIDQYTFAAV 270
Query: 225 LKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
L++C + GRQ H +VK G E +EYV L+ MY KC +++DA FE K+
Sbjct: 271 LRSCSDLAT-LQLGRQTHVLVVKSGFEGNEYVSSALIFMYSKCGIIKDARESFE-SSHKE 328
Query: 285 NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
+WN+++ Y ++G A YLM I++ ACS I
Sbjct: 329 TSVTWNSIIFAYAQHGQGKIALDLFYLMTERHIKLDHVTFVAALTACSHI 378
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 74/251 (29%), Positives = 122/251 (48%), Gaps = 12/251 (4%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEM-MKRKKGHMLL 113
M+ C +++ A +F M R+ SW +I GY ++ + Q CI LF M M+ K
Sbjct: 2 MYAKCRRVEDANTVFMYMQERNTVSWNALIGGYAEMCNLQRCIELFMCMEMEGVKVDDAT 61
Query: 114 VFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADF 173
P +L + +L +Q+HG + + G ++ + I Y + C+EDA
Sbjct: 62 FAP------LLTLLYDAESYDLTRQLHGKIMQRGLEHENTVLNATITAYAECGCIEDAKR 115
Query: 174 VF-SQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVD 232
VF S + V W + + FN F EM R+R++ ++YT SS++ AC D
Sbjct: 116 VFDSSDGFRDLVTWNSMLAAYLEYKLEECGFNIFLEMVRQRLEMDAYTLSSIISACFE-D 174
Query: 233 DDGNCGRQMHANIVKIGLESDEYVQCGLVDMY--GKCRLLRDAERVFELIVDKKNIASWN 290
+ G+ +H ++K GL+ + L+ MY R + DA ++FE I K++ SWN
Sbjct: 175 SQQSLGKSLHGLVIKKGLDQVTQISNALISMYLRSNSRNVEDAFKIFEHIT-VKDLVSWN 233
Query: 291 AMLVGYIRNGL 301
+L G +NGL
Sbjct: 234 TILTGLSQNGL 244
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 70/142 (49%), Gaps = 1/142 (0%)
Query: 160 NFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSY 219
+ Y K R +EDA+ VF ++ NTV W A I + + F M E +K +
Sbjct: 1 DMYAKCRRVEDANTVFMYMQERNTVSWNALIGGYAEMCNLQRCIELFMCMEMEGVKVDDA 60
Query: 220 TFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFEL 279
TF+ +L + + RQ+H I++ GLE + V + Y +C + DA+RVF+
Sbjct: 61 TFAPLLTLLYDAES-YDLTRQLHGKIMQRGLEHENTVLNATITAYAECGCIEDAKRVFDS 119
Query: 280 IVDKKNIASWNAMLVGYIRNGL 301
+++ +WN+ML Y+ L
Sbjct: 120 SDGFRDLVTWNSMLAAYLEYKL 141
>gi|302793382|ref|XP_002978456.1| hypothetical protein SELMODRAFT_108616 [Selaginella moellendorffii]
gi|300153805|gb|EFJ20442.1| hypothetical protein SELMODRAFT_108616 [Selaginella moellendorffii]
Length = 899
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 88/299 (29%), Positives = 135/299 (45%), Gaps = 11/299 (3%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
Y L+++CT QK +A + HI N L+ M+ CG L+ A ++F+ +
Sbjct: 29 YASLLQKCTEQKSAAAGKLVHQHILSS-GCGVNRYIQNHLIFMYAKCGCLEDALEVFELL 87
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN 132
P + SW +I Y +E + LF +M VF VL AC
Sbjct: 88 PNPNVFSWTALITAYAKEGHLREVLGLFRKMQLDGTKPDAFVFST-----VLTACSSAGA 142
Query: 133 MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192
+ GK +H G + + +++N YGK + +A VF +L N V W A I
Sbjct: 143 LNEGKAIHDCAVLAGMETQV-VGNAIVNLYGKCGRVHEAKAVFERLPERNLVSWNALIAA 201
Query: 193 NCREGHFHQVFNDFKEMGRE-RIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLE 251
N + GH F M + ++ N TF SV+ AC + D G+ H I++ G +
Sbjct: 202 NAQNGHCKDAMQVFHLMDLDGSVRPNDATFVSVVDACSNLLDLPR-GKSTHERIIRTGFD 260
Query: 252 SDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLY 310
S +V LV+MYGKC + A VFE + +N+ SW M+ Y + G ++ A LY
Sbjct: 261 SYLFVGNSLVNMYGKCGSVDRARLVFEKM-SSRNVVSWTVMIWAYAQQG-FIRAAFDLY 317
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 81/293 (27%), Positives = 142/293 (48%), Gaps = 11/293 (3%)
Query: 45 TLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMM 104
T + N ++ ++ CG++ A+ +F+ +P R+ SW +I ++ + +F M
Sbjct: 160 TQVVGNAIVNLYGKCGRVHEAKAVFERLPERNLVSWNALIAANAQNGHCKDAMQVFHLMD 219
Query: 105 KRKKGHMLLVFPA-WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYG 163
V P V V+ AC +++ GK H + + G + + SL+N YG
Sbjct: 220 LDGS-----VRPNDATFVSVVDACSNLLDLPRGKSTHERIIRTGFDSYLFVGNSLVNMYG 274
Query: 164 KFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSS 223
K ++ A VF ++ N V WT I ++G F+ +K M E N+ TF +
Sbjct: 275 KCGSVDRARLVFEKMSSRNVVSWTVMIWAYAQQGFIRAAFDLYKRMDCE---PNAVTFMA 331
Query: 224 VLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
V+ +C +D Q+HA++V G +SD +Q LV MYGKC + A +FE + ++
Sbjct: 332 VMDSCLRPEDLPR-AEQIHAHMVASGFDSDAVLQVCLVTMYGKCGSVDSAWSIFENLKER 390
Query: 284 KNIA-SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
N A +WNAM+ G ++G +A + + M+ G++ ACSS++
Sbjct: 391 SNNAVTWNAMISGLAQHGESKQALECFWKMELEGVRPNSVTYLASLEACSSLN 443
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 110/213 (51%), Gaps = 4/213 (1%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
+L+ C + GK VH + G N + LI Y K CLEDA VF L N
Sbjct: 32 LLQKCTEQKSAAAGKLVHQHILSSGCGVNRYIQNHLIFMYAKCGCLEDALEVFELLPNPN 91
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
WTA I +EGH +V F++M + K +++ FS+VL AC N G+ +H
Sbjct: 92 VFSWTALITAYAKEGHLREVLGLFRKMQLDGTKPDAFVFSTVLTACSSAGAL-NEGKAIH 150
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
V G+E+ + V +V++YGKC + +A+ VFE + + +N+ SWNA++ +NG
Sbjct: 151 DCAVLAGMET-QVVGNAIVNLYGKCGRVHEAKAVFERLPE-RNLVSWNALIAANAQNGHC 208
Query: 303 VEATKFLYLMKASG-IQIQESLINDLRIACSSI 334
+A + +LM G ++ ++ + ACS++
Sbjct: 209 KDAMQVFHLMDLDGSVRPNDATFVSVVDACSNL 241
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 74/286 (25%), Positives = 129/286 (45%), Gaps = 14/286 (4%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFN--SWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
L+ M+ CG +D+A +F+ + R N +W MI G + ++ + F +M
Sbjct: 367 LVTMYGKCGSVDSAWSIFENLKERSNNAVTWNAMISGLAQHGESKQALECFWKM------ 420
Query: 110 HMLLVFPAWII-VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+ V P + + L+AC ++ G+Q+H + L + +L+ ++IN YGK L
Sbjct: 421 ELEGVRPNSVTYLASLEACSSLNDLTRGRQLHARIL-LENIHEANLSNAVINMYGKCGSL 479
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
++A F+++ + V W I + G Q FK+M E + T+ + AC
Sbjct: 480 DEAMDEFAKMPERDVVSWNTMIATYAQHGSGRQALEFFKQMDLEGWTTDRATYLGAIDAC 539
Query: 229 GGVDDDGNCGRQMHANIVKIG--LESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
G V G+ +H+ + LE D V LV MY +C L DA+ VF +N+
Sbjct: 540 GSVPSLA-LGKTIHSIVATAAPCLEQDPGVATALVTMYARCGSLHDAKSVF-WRSHSRNL 597
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+W+ ++ ++G EA M+ G + + L ACS
Sbjct: 598 VTWSNLIAACAQHGRENEALDLFREMQLQGTKPDALTFSTLVAACS 643
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/255 (25%), Positives = 109/255 (42%), Gaps = 25/255 (9%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N ++ M+ CG LD A F +MP RD SW MI Y ++ + F +M
Sbjct: 467 NAVINMYGKCGSLDEAMDEFAKMPERDVVSWNTMIATYAQHGSGRQALEFFKQM------ 520
Query: 110 HMLLVFPAWII-----VCVLKACVCTMNMELGKQVHGLLFKLGS--SRNISLTGSLINFY 162
W + + AC ++ LGK +H ++ ++ + +L+ Y
Sbjct: 521 ----DLEGWTTDRATYLGAIDACGSVPSLALGKTIHSIVATAAPCLEQDPGVATALVTMY 576
Query: 163 GKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFS 222
+ L DA VF + N V W+ I + G ++ + F+EM + K ++ TFS
Sbjct: 577 ARCGSLHDAKSVFWRSHSRNLVTWSNLIAACAQHGRENEALDLFREMQLQGTKPDALTFS 636
Query: 223 SVLKACG--GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELI 280
+++ AC GV DG I D + G+VD+ G+ L +AE+V
Sbjct: 637 TLVAACSRRGVVKDGVFYFVSMVEDYSIPASEDHF--GGMVDLLGRAGWLEEAEQVMR-- 692
Query: 281 VDKKNIASWNAMLVG 295
K A +A+L+G
Sbjct: 693 --KNPCALAHAVLLG 705
>gi|302801528|ref|XP_002982520.1| hypothetical protein SELMODRAFT_116755 [Selaginella moellendorffii]
gi|300149619|gb|EFJ16273.1| hypothetical protein SELMODRAFT_116755 [Selaginella moellendorffii]
Length = 694
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 86/307 (28%), Positives = 141/307 (45%), Gaps = 16/307 (5%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVN----IKPTLLFLNRLLLMHVSCGQLDTARQL 68
+ L++ C DS E I RV+ ++ + N ++ M+ C + D A +
Sbjct: 13 FLALLEAC----DSPEFLEDGKQIHARVSALQLLESDVPVANAVMGMYRKCERADLAMAV 68
Query: 69 FDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACV 128
F EM RD SW I + DY + L M + F V L AC+
Sbjct: 69 FSEMRERDLISWNNAIAANAESGDYTFTLALLKSMQLEGMAPDKVTF-----VSALNACI 123
Query: 129 CTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTA 188
+ ++ G+ +H L+ + G ++ L +L+ YG+ CLE A +F ++ N V W A
Sbjct: 124 GSRSLSNGRLIHALVLERGMEGDVVLGTALVTMYGRCGCLESAREIFHRMPERNVVSWNA 183
Query: 189 KIVNNCREGHFHQVFNDFKEM-GRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVK 247
+ + HF + FK M ++ +F +VL A + GR++H I +
Sbjct: 184 MVASCTLNAHFAEAIELFKRMVAVAMVEPTRVSFITVLNAVTTREALAE-GRRIHEMIQE 242
Query: 248 IGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATK 307
L S V LV MYG+C + DAERVF + +++++ SWNAM+ Y ++GL E
Sbjct: 243 RQLLSQIEVANALVTMYGRCGGVGDAERVFSAM-ERRDLVSWNAMISAYAQSGLACEVVN 301
Query: 308 FLYLMKA 314
+ M+A
Sbjct: 302 LFHRMRA 308
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 73/251 (29%), Positives = 116/251 (46%), Gaps = 13/251 (5%)
Query: 72 MPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTM 131
M RD SW MI GYV D +++F M+ + F + + VC +A
Sbjct: 312 MAARDVISWNTMITGYVQAGDPFSALSIFKRMLLEGIRGNQVTFMSLLSVCDSRAL---- 367
Query: 132 NMELGKQVHGLLFKLGS--SRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAK 189
+ G+ +H + S + + +++N YGK L+ A +F N W +
Sbjct: 368 -LRQGETIHRCVIDQTPELSSDPIVAAAIVNMYGKCGELDTARHLFEDTSHRNLASWNSM 426
Query: 190 IVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--GGVDDDGNCGRQMHANIVK 247
I G Q F+ + M RE + + TF ++L AC GG G+ +HA I+
Sbjct: 427 ISAYALHGRAEQAFDLSERMRREGVLPDRVTFITLLNACVAGGAVRQ---GKMIHARIID 483
Query: 248 IGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATK 307
GLE D V LV+ Y KC L A +F + D +++ SWN ++ G+ NG EA K
Sbjct: 484 SGLEKDTVVANALVNFYSKCGNLDTATSLFGAL-DYRDVVSWNGIIAGFAHNGHAREALK 542
Query: 308 FLYLMKASGIQ 318
++LM+ G++
Sbjct: 543 SMWLMQQDGVR 553
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 83/310 (26%), Positives = 131/310 (42%), Gaps = 55/310 (17%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ CG L++AR++F MP R+ SW M+ A + E I LF M+ +
Sbjct: 153 LVTMYGRCGCLESAREIFHRMPERNVVSWNAMVASCTLNAHFAEAIELFKRMVA-----V 207
Query: 112 LLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
+V P + + VL A + G+++H ++ + I + +L+ YG+ + D
Sbjct: 208 AMVEPTRVSFITVLNAVTTREALAEGRRIHEMIQERQLLSQIEVANALVTMYGRCGGVGD 267
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRER----------------- 213
A+ VFS ++R + V W A I + G +V N F M ER
Sbjct: 268 AERVFSAMERRDLVSWNAMISAYAQSGLACEVVNLFHRMRAERSMAARDVISWNTMITGY 327
Query: 214 --------------------IKKNSYTFSSVLKACGGVDDDGNC----GRQMHANIV--K 247
I+ N TF S+L C D G +H ++
Sbjct: 328 VQAGDPFSALSIFKRMLLEGIRGNQVTFMSLLSVC-----DSRALLRQGETIHRCVIDQT 382
Query: 248 IGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATK 307
L SD V +V+MYGKC L A +FE +N+ASWN+M+ Y +G +A
Sbjct: 383 PELSSDPIVAAAIVNMYGKCGELDTARHLFE-DTSHRNLASWNSMISAYALHGRAEQAFD 441
Query: 308 FLYLMKASGI 317
M+ G+
Sbjct: 442 LSERMRREGV 451
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/245 (25%), Positives = 110/245 (44%), Gaps = 17/245 (6%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+ CG+LDTAR LF++ R+ SW MI Y ++ L +E M+R+ V
Sbjct: 398 MYGKCGELDTARHLFEDTSHRNLASWNSMISAYALHGRAEQAFDL-SERMRREG-----V 451
Query: 115 FPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADF 173
P + + +L ACV + GK +H + G ++ + +L+NFY K L+ A
Sbjct: 452 LPDRVTFITLLNACVAGGAVRQGKMIHARIIDSGLEKDTVVANALVNFYSKCGNLDTATS 511
Query: 174 VFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDD 233
+F L + V W I GH + M ++ ++ ++ TF ++L A
Sbjct: 512 LFGALDYRDVVSWNGIIAGFAHNGHAREALKSMWLMQQDGVRPDAITFLTILSA----SS 567
Query: 234 DGNCGRQMHANIVKIGLESD-----EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
RQ + V + ++ + E+ C ++D+ G+ + +AE + D+ S
Sbjct: 568 HAGFLRQGGDDFVSMAVDHELERGVEHYGC-MIDLLGRAGRIGEAEYFVSAMRDEDKEVS 626
Query: 289 WNAML 293
W +L
Sbjct: 627 WMTLL 631
>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
Length = 845
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 90/335 (26%), Positives = 165/335 (49%), Gaps = 21/335 (6%)
Query: 4 LCLPITTDMYTC--LIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQ 61
+C+ D +T ++ CT F++ I K + + + N L+ + CG+
Sbjct: 131 MCMGAVPDNFTFPFVLSACTKSAALTEGFQVHGAIVK-MGFERDMFVENSLIHFYGECGE 189
Query: 62 LDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI-I 120
+D R++FD+M R+ SW +I GY Y+E ++LF EM++ + + P + +
Sbjct: 190 IDCMRRVFDKMSERNVVSWTSLIGGYAKRGCYKEAVSLFFEMVE------VGIRPNSVTM 243
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
V V+ AC +++LG+QV + +L N + +L++ Y K ++ A +F +
Sbjct: 244 VGVISACAKLQDLQLGEQVCTCIGELELEVNALMVNALVDMYMKCGAIDKARKIFDECVD 303
Query: 181 HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQ 240
N V++ + N R+G +V EM + + + T S + AC +DD +CG+
Sbjct: 304 KNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPRPDRITMLSAVSACSELDDV-SCGKW 362
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
H +++ GLE + V +++MY KC A RVF+ +++K + SWN+++ G++RNG
Sbjct: 363 CHGYVLRNGLEGWDNVCNAIINMYMKCGKQEMACRVFDRMLNKTRV-SWNSLIAGFVRNG 421
Query: 301 LYVEATKFLYLMKAS---------GIQIQESLIND 326
A K M S G +QES+ +
Sbjct: 422 DMESAWKIFSAMPDSDLVSWNTMIGALVQESMFKE 456
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 105/212 (49%), Gaps = 2/212 (0%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
VL AC + + G QVHG + K+G R++ + SLI+FYG+ ++ VF ++ N
Sbjct: 145 VLSACTKSAALTEGFQVHGAIVKMGFERDMFVENSLIHFYGECGEIDCMRRVFDKMSERN 204
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
V WT+ I + G + + + F EM I+ NS T V+ AC + D G Q+
Sbjct: 205 VVSWTSLIGGYAKRGCYKEAVSLFFEMVEVGIRPNSVTMVGVISACAKLQDL-QLGEQVC 263
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
I ++ LE + + LVDMY KC + A ++F+ VD KN+ +N ++ Y+R GL
Sbjct: 264 TCIGELELEVNALMVNALVDMYMKCGAIDKARKIFDECVD-KNLVLYNTIMSNYVRQGLA 322
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIACSSI 334
E L M G + + ACS +
Sbjct: 323 REVLAVLGEMLKHGPRPDRITMLSAVSACSEL 354
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 115/256 (44%), Gaps = 9/256 (3%)
Query: 42 IKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFA 101
+ T + N L+ V G +++A ++F MP D SW MI V + ++E I LF
Sbjct: 403 LNKTRVSWNSLIAGFVRNGDMESAWKIFSAMPDSDLVSWNTMIGALVQESMFKEAIELFR 462
Query: 102 EMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINF 161
M + +V V AC ++L K +HG + K ++ L +L++
Sbjct: 463 VMQSEG-----ITADKVTMVGVASACGYLGALDLAKWIHGYIKKKDIHFDMHLGTALVDM 517
Query: 162 YGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTF 221
+ + + A VF+++ + + WTA I EG+ F EM ++ IK + F
Sbjct: 518 FARCGDPQSAMQVFNKMVKRDVSAWTAAIGAMAMEGNGTGAIELFDEMLQQGIKPDGVVF 577
Query: 222 SSVLKAC--GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFEL 279
++L A GG+ + G + +I I ++ Y C +VD+ G+ LL +A +
Sbjct: 578 VALLTALSHGGLVEQGWHIFRSMKDIYGIAPQAVHY-GC-MVDLLGRAGLLSEALSLINS 635
Query: 280 IVDKKNIASWNAMLVG 295
+ + N W ++L
Sbjct: 636 MQMEPNDVIWGSLLAA 651
>gi|147819295|emb|CAN68962.1| hypothetical protein VITISV_019277 [Vitis vinifera]
Length = 676
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 83/282 (29%), Positives = 139/282 (49%), Gaps = 9/282 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+++CG+++ AR++FD M R SW MI GY +E + +F M+ +
Sbjct: 162 NSLMAMYMNCGEMEVARRVFDLMRERTLVSWNTMINGYFKNGCVKEALMVFDWMIGKG-- 219
Query: 110 HMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+ P +V VL C +E+G++VH L+ +IS+ SL++ Y K +
Sbjct: 220 ----IEPDCATVVSVLPVCSYLKELEVGRRVHALVEVKNLGEDISVWNSLLDMYAKCGNM 275
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
++A +F ++ + + V WT + G + M E +K N T +SVL AC
Sbjct: 276 DEAQMIFYEMDKRDVVSWTTMMNGYILNGDARSALLLCQMMQFESVKPNFVTLASVLSAC 335
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
+ + GR +H ++ LES+ V+ L+DMY KC + + RVF K+ A
Sbjct: 336 ASLYSLKH-GRCLHGWAIRQKLESEVIVETALIDMYAKCNNVNLSFRVFSK-XSKQRTAP 393
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIA 330
WNA++ G I NGL +A + M + ++ +N L A
Sbjct: 394 WNAIISGCIHNGLSRKAIELFKQMLMEAVDPNDATLNSLLPA 435
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 85/294 (28%), Positives = 136/294 (46%), Gaps = 9/294 (3%)
Query: 41 NIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLF 100
N+ + N LL M+ CG +D A+ +F EM RD SW M+ GY+ D + + L
Sbjct: 254 NLGEDISVWNSLLDMYAKCGNMDEAQMIFYEMDKRDVVSWTTMMNGYILNGDARSAL-LL 312
Query: 101 AEMMKRKKGHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLI 159
+MM+ + V P ++ + VL AC +++ G+ +HG + + + +LI
Sbjct: 313 CQMMQFES-----VKPNFVTLASVLSACASLYSLKHGRCLHGWAIRQKLESEVIVETALI 367
Query: 160 NFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSY 219
+ Y K + + VFS+ + T W A I G + FK+M E + N
Sbjct: 368 DMYAKCNNVNLSFRVFSKXSKQRTAPWNAIISGCIHNGLSRKAIELFKQMLMEAVDPNDA 427
Query: 220 TFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFEL 279
T +S+L A + D R MH +++ G S V L+D+Y KC L A +F
Sbjct: 428 TLNSLLPAYAFLTDLQQ-ARNMHGYLIRSGFLSRIEVATILIDIYSKCGSLESAHNIFNG 486
Query: 280 IVDK-KNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
I K K+I +W+A++ GY +G A M SG++ E + ACS
Sbjct: 487 IPKKDKDIITWSAIIAGYGMHGHGETAISLFDQMVQSGVKPNEITFTSILHACS 540
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 87/336 (25%), Positives = 145/336 (43%), Gaps = 10/336 (2%)
Query: 6 LPITTDMYTCLIKECTFQKDSAGAFELLNH-IRKRVNIKP-TLLFLNRLLLMHVSCGQLD 63
L T Y L++ CT +K ++ H I + P + L+ L + CG
Sbjct: 14 LLTATARYQSLLQRCTSRKSIPNTKQIHAHTITLGLLSSPYSHHLLSSLAAAYAMCGCAP 73
Query: 64 TARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIVC 122
AR+LFDE+ SW MI Y + + + LF +M+ + +P +
Sbjct: 74 HARKLFDELRNPSLFSWNAMIRMYTNSGLSYDALGLFVQMLASGRR-----WPDNYTYPF 128
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
V+KAC + E+G +H G + + SL+ Y +E A VF ++
Sbjct: 129 VIKACGDYLLPEMGALIHARTVMSGFDSDAFVQNSLMAMYMNCGEMEVARRVFDLMRERT 188
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
V W I + G + F M + I+ + T SVL C + + GR++H
Sbjct: 189 LVSWNTMINGYFKNGCVKEALMVFDWMIGKGIEPDCATVVSVLPVCSYLKEL-EVGRRVH 247
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
A + L D V L+DMY KC + +A+ +F +DK+++ SW M+ GYI NG
Sbjct: 248 ALVEVKNLGEDISVWNSLLDMYAKCGNMDEAQMIF-YEMDKRDVVSWTTMMNGYILNGDA 306
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIACSSISASK 338
A +M+ ++ + + AC+S+ + K
Sbjct: 307 RSALLLCQMMQFESVKPNFVTLASVLSACASLYSLK 342
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/260 (23%), Positives = 118/260 (45%), Gaps = 13/260 (5%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R ++ ++ L+ M+ C ++ + ++F + + W +I G + ++ I
Sbjct: 353 RQKLESEVIVETALIDMYAKCNNVNLSFRVFSKXSKQRTAPWNAIISGCIHNGLSRKAIE 412
Query: 99 LFAEMMKRKKGHMLLVFPA-WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGS 157
LF +M+ M V P + +L A +++ + +HG L + G I +
Sbjct: 413 LFKQML------MEAVDPNDATLNSLLPAYAFLTDLQQARNMHGYLIRSGFLSRIEVATI 466
Query: 158 LINFYGKFRCLEDADFVFSQL--KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIK 215
LI+ Y K LE A +F+ + K + + W+A I GH + F +M + +K
Sbjct: 467 LIDIYSKCGSLESAHNIFNGIPKKDKDIITWSAIIAGYGMHGHGETAISLFDQMVQSGVK 526
Query: 216 KNSYTFSSVLKAC--GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDA 273
N TF+S+L AC G+ D+G + ++ L +D Y C ++D+ G+ L +A
Sbjct: 527 PNEITFTSILHACSHAGLVDEGLGLFKFMLEDNQMSLRTDHYT-C-VIDLLGRAGRLEEA 584
Query: 274 ERVFELIVDKKNIASWNAML 293
+ + + N A W A+L
Sbjct: 585 YELIRTMAFRPNHAVWGALL 604
>gi|297738890|emb|CBI28135.3| unnamed protein product [Vitis vinifera]
Length = 1974
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 83/265 (31%), Positives = 133/265 (50%), Gaps = 9/265 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+ L+ M+ CG L+ AR++FD M ++ +W MIVGYV QE I +F +M R +G
Sbjct: 1316 SSLVDMYGKCGVLEDARKVFDSMVEKNVVTWNSMIVGYVQNGLNQEAIDVFYDM--RVEG 1373
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMEL-GKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+ P + V + ++ + GKQ H + + L S+INFY K +
Sbjct: 1374 ----IEPTRVTVASFLSASANLDALIEGKQGHAIAILNSLDLDNILGSSIINFYSKVGLI 1429
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
EDA+ VFS++ + V W I + + + N M E ++ +S T SS+L A
Sbjct: 1430 EDAELVFSRMLEKDVVTWNLLISSYVQHHQVGKALNMCHLMRSENLRFDSVTLSSILSAS 1489
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
V + G++ H ++ LESD V ++DMY KC + DA +VF+ + +++
Sbjct: 1490 A-VTSNIKLGKEGHCYCIRRNLESDVVVANSIIDMYAKCERIDDARKVFDSTTE-RDLVL 1547
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMK 313
WN +L Y + GL EA K Y M+
Sbjct: 1548 WNTLLAAYAQVGLSGEALKLFYQMQ 1572
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 115/216 (53%), Gaps = 4/216 (1%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGS--SRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
+L+ CV + G+Q+H + K G ++N + L+ FY K E A +F +L+
Sbjct: 1180 LLQGCVYERALHTGQQIHARILKNGDFFAKNEYVETKLVVFYAKCDFPEVAVRLFHRLRV 1239
Query: 181 HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQ 240
N W A + CR G F EM + +++ +VLKACG + G G+
Sbjct: 1240 RNVFSWAAIVGLQCRMGFSEDALLGFIEMQENGVFPDNFVLPNVLKACGSLQLIG-LGKG 1298
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
+H ++K+G + +V LVDMYGKC +L DA +VF+ +V+ KN+ +WN+M+VGY++NG
Sbjct: 1299 VHGYVLKMGFGACVFVSSSLVDMYGKCGVLEDARKVFDSMVE-KNVVTWNSMIVGYVQNG 1357
Query: 301 LYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
L EA Y M+ GI+ + A +++ A
Sbjct: 1358 LNQEAIDVFYDMRVEGIEPTRVTVASFLSASANLDA 1393
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 84/334 (25%), Positives = 162/334 (48%), Gaps = 10/334 (2%)
Query: 8 ITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFL-NRLLLMHVSCGQLDTAR 66
I ++Y L++ C +++ ++ I K + ++ +L++ + C + A
Sbjct: 1172 IGPEIYGELLQGCVYERALHTGQQIHARILKNGDFFAKNEYVETKLVVFYAKCDFPEVAV 1231
Query: 67 QLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCVLK 125
+LF + +R+ SWA ++ + ++ + F EM + VFP +++ VLK
Sbjct: 1232 RLFHRLRVRNVFSWAAIVGLQCRMGFSEDALLGFIEMQENG------VFPDNFVLPNVLK 1285
Query: 126 ACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVV 185
AC + LGK VHG + K+G + ++ SL++ YGK LEDA VF + N V
Sbjct: 1286 ACGSLQLIGLGKGVHGYVLKMGFGACVFVSSSLVDMYGKCGVLEDARKVFDSMVEKNVVT 1345
Query: 186 WTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANI 245
W + IV + G + + F +M E I+ T +S L A +D G+Q HA
Sbjct: 1346 WNSMIVGYVQNGLNQEAIDVFYDMRVEGIEPTRVTVASFLSASANLDALIE-GKQGHAIA 1404
Query: 246 VKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEA 305
+ L+ D + +++ Y K L+ DAE VF +++ K++ +WN ++ Y+++ +A
Sbjct: 1405 ILNSLDLDNILGSSIINFYSKVGLIEDAELVFSRMLE-KDVVTWNLLISSYVQHHQVGKA 1463
Query: 306 TKFLYLMKASGIQIQESLINDLRIACSSISASKI 339
+LM++ ++ ++ + A + S K+
Sbjct: 1464 LNMCHLMRSENLRFDSVTLSSILSASAVTSNIKL 1497
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 70/298 (23%), Positives = 119/298 (39%), Gaps = 46/298 (15%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R N++ ++ N ++ M+ C ++D AR++FD RD W ++ Y V E +
Sbjct: 1507 RRNLESDVVVANSIIDMYAKCERIDDARKVFDSTTERDLVLWNTLLAAYAQVGLSGEALK 1566
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
LF +M F IS +
Sbjct: 1567 LFYQMQ---------------------------------------FDSVPPNVISWNSVI 1587
Query: 159 INFYGKFRCLEDADFVFSQLK----RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERI 214
+ F + E D +FSQ++ + N + WT I + G ++ F++M I
Sbjct: 1588 LGFLRNGQVNEAKD-MFSQMQSLGFQPNLITWTTLISGLAQSGFGYEAILFFQKMQEAGI 1646
Query: 215 KKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAE 274
+ + + +SVL AC + GR +H I + V LVDMY KC + +A+
Sbjct: 1647 RPSIASITSVLLACTDIPSLW-YGRAIHGFITRHEFCLSVPVATSLVDMYAKCGSIDEAK 1705
Query: 275 RVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+VF ++ K + +NAM+ Y +G VEA ++ GI+ + ACS
Sbjct: 1706 KVFHMM-SSKELPIYNAMISAYALHGQAVEALALFKHLQKEGIEPDSITFTSILSACS 1762
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 94/215 (43%), Gaps = 23/215 (10%)
Query: 41 NIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFN----SWAVMIVGYVDVADYQEC 96
++ P ++ N ++L + GQ++ A+ +F +M F +W +I G E
Sbjct: 1575 SVPPNVISWNSVILGFLRNGQVNEAKDMFSQMQSLGFQPNLITWTTLISGLAQSGFGYEA 1634
Query: 97 ITLFAEMMKRKKGHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLT 155
I F +M + + P+ I VL AC ++ G+ +HG + + ++ +
Sbjct: 1635 ILFFQKMQEAG------IRPSIASITSVLLACTDIPSLWYGRAIHGFITRHEFCLSVPVA 1688
Query: 156 GSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIK 215
SL++ Y K +++A VF + ++ A I G + FK + +E I+
Sbjct: 1689 TSLVDMYAKCGSIDEAKKVFHMMSSKELPIYNAMISAYALHGQAVEALALFKHLQKEGIE 1748
Query: 216 KNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGL 250
+S TF+S+L AC HA +V GL
Sbjct: 1749 PDSITFTSILSACS------------HAGLVNEGL 1771
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 55/280 (19%), Positives = 114/280 (40%), Gaps = 42/280 (15%)
Query: 59 CGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAW 118
G ++ A +F M +D +W ++I YV + + + +M+ + L F +
Sbjct: 1426 VGLIEDAELVFSRMLEKDVVTWNLLISSYVQHHQVGKALNM-CHLMRSEN----LRFDSV 1480
Query: 119 IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL 178
+ +L A T N++LGK+ H + ++ + S+I+ Y K ++DA VF
Sbjct: 1481 TLSSILSASAVTSNIKLGKEGHCYCIRRNLESDVVVANSIIDMYAKCERIDDARKVFDST 1540
Query: 179 KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDG--N 236
+ V+W + + G + F +M + + N +++SV+ G +G N
Sbjct: 1541 TERDLVLWNTLLAAYAQVGLSGEALKLFYQMQFDSVPPNVISWNSVIL---GFLRNGQVN 1597
Query: 237 CGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGY 296
+ M + + +G + N+ +W ++ G
Sbjct: 1598 EAKDMFSQMQSLGFQ--------------------------------PNLITWTTLISGL 1625
Query: 297 IRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
++G EA F M+ +GI+ + I + +AC+ I +
Sbjct: 1626 AQSGFGYEAILFFQKMQEAGIRPSIASITSVLLACTDIPS 1665
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 68/143 (47%), Gaps = 4/143 (2%)
Query: 194 CREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIG--LE 251
C++GH + + EM E + + +L+ C + + G+Q+HA I+K G
Sbjct: 1150 CKDGHLQESVHLLSEMEFEDFQIGPEIYGELLQGC-VYERALHTGQQIHARILKNGDFFA 1208
Query: 252 SDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYL 311
+EYV+ LV Y KC A R+F + +N+ SW A++ R G +A
Sbjct: 1209 KNEYVETKLVVFYAKCDFPEVAVRLFHRL-RVRNVFSWAAIVGLQCRMGFSEDALLGFIE 1267
Query: 312 MKASGIQIQESLINDLRIACSSI 334
M+ +G+ ++ ++ AC S+
Sbjct: 1268 MQENGVFPDNFVLPNVLKACGSL 1290
>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
Length = 736
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 87/272 (31%), Positives = 134/272 (49%), Gaps = 18/272 (6%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ + S G LD AR+LFDE+P+RD SW MI GY +E + F EM + K
Sbjct: 200 LITGYASKGFLDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAK---- 255
Query: 112 LLVFP-AWIIVCVLKACVCT-MNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
V P ++ VL AC + +++LG V + G NI L LI+ Y K LE
Sbjct: 256 --VTPNVSTMLSVLSACAQSGSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLE 313
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC- 228
+A +F +++ N V W I + + F+ M + I N TF S+L AC
Sbjct: 314 EASNLFEKIQDKNVVSWNVMIGGYTHMSCYKEALGLFRRMMQSNIDPNDVTFLSILPACA 373
Query: 229 --GGVDDDGNCGRQMHANIVK--IGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
G +D G+ +HA + K +++ + L+DMY KC L A+R+F+ + + K
Sbjct: 374 NLGALD----LGKWVHAYVDKNMKSMKNTVALWTSLIDMYAKCGDLAVAKRIFDCM-NTK 428
Query: 285 NIASWNAMLVGYIRNGLYVEATKFLYLMKASG 316
++A+WNAM+ G+ +G A M + G
Sbjct: 429 SLATWNAMISGFAMHGHTDTALGLFSRMTSEG 460
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 83/308 (26%), Positives = 119/308 (38%), Gaps = 37/308 (12%)
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI 119
G L A LF + + W MI G + + M+ FP+
Sbjct: 76 GDLSYALSLFKTIRNPNHVIWNHMIRGLSSSESPFLALEYYVHMISSGTEPNEYTFPS-- 133
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK--------------- 164
+ K+C GKQVH + KLG N + SLIN Y +
Sbjct: 134 ---IFKSCTKIRGAHEGKQVHAHVLKLGLEHNAFVHTSLINMYAQNGELVNARLVFDKSS 190
Query: 165 ------FRCL----------EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKE 208
F L ++A +F ++ + V W A I + G + F+E
Sbjct: 191 MRDAVSFTALITGYASKGFLDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEE 250
Query: 209 MGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCR 268
M R ++ N T SVL AC G + + I GL S+ + GL+DMY KC
Sbjct: 251 MRRAKVTPNVSTMLSVLSACAQSGSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCG 310
Query: 269 LLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLR 328
L +A +FE I D KN+ SWN M+ GY Y EA M S I + +
Sbjct: 311 DLEEASNLFEKIQD-KNVVSWNVMIGGYTHMSCYKEALGLFRRMMQSNIDPNDVTFLSIL 369
Query: 329 IACSSISA 336
AC+++ A
Sbjct: 370 PACANLGA 377
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 76/276 (27%), Positives = 132/276 (47%), Gaps = 16/276 (5%)
Query: 26 SAGAFELLNHIRKRVN---IKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAV 82
S + +L N +R + + + +N L+ M+V CG L+ A LF+++ ++ SW V
Sbjct: 273 SGSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQDKNVVSWNV 332
Query: 83 MIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGL 142
MI GY ++ Y+E + LF MM+ + F + +L AC ++LGK VH
Sbjct: 333 MIGGYTHMSCYKEALGLFRRMMQSNIDPNDVTF-----LSILPACANLGALDLGKWVHAY 387
Query: 143 LFK-LGSSRN-ISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFH 200
+ K + S +N ++L SLI+ Y K L A +F + + W A I GH
Sbjct: 388 VDKNMKSMKNTVALWTSLIDMYAKCGDLAVAKRIFDCMNTKSLATWNAMISGFAMHGHTD 447
Query: 201 QVFNDFKEMGRERIKKNSYTFSSVLKAC--GGVDDDGNCGRQMHANIVKIGLESDEYVQC 258
F M E + TF VL AC G+ + GR+ +++++ S +
Sbjct: 448 TALGLFSRMTSEGFVPDDITFVGVLTACKHAGL---LSLGRRYFSSMIQDYKVSPKLPHY 504
Query: 259 G-LVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
G ++D++G+ L +AE + + + K + A W ++L
Sbjct: 505 GCMIDLFGRAGLFDEAETLVKNMEMKPDGAIWCSLL 540
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 96/233 (41%), Gaps = 33/233 (14%)
Query: 137 KQVHGLLFKLGSSRNISLTGSLINF--YGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNC 194
KQ+H + K G LI F L A +F ++ N V+W I
Sbjct: 45 KQIHSQIIKTGLHNTHFALSKLIEFCAVSPHGDLSYALSLFKTIRNPNHVIWNHMIRGLS 104
Query: 195 REGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDE 254
+ M + N YTF S+ K+C + + G+Q+HA+++K+GLE +
Sbjct: 105 SSESPFLALEYYVHMISSGTEPNEYTFPSIFKSCTKIRG-AHEGKQVHAHVLKLGLEHNA 163
Query: 255 YVQCGLVDMYGK------CRL------LRDAERVFELI------------------VDKK 284
+V L++MY + RL +RDA LI + +
Sbjct: 164 FVHTSLINMYAQNGELVNARLVFDKSSMRDAVSFTALITGYASKGFLDEARELFDEIPVR 223
Query: 285 NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISAS 337
++ SWNAM+ GY ++G EA F M+ + + S + + AC+ +S
Sbjct: 224 DVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSVLSACAQSGSS 276
>gi|449447749|ref|XP_004141630.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g13880-like [Cucumis sativus]
Length = 746
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 96/338 (28%), Positives = 161/338 (47%), Gaps = 17/338 (5%)
Query: 6 LPITTDMYTCL--IKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLD 63
L + D Y C + C+ Q + A ++++ + + ++ N L+ M+ CGQ+D
Sbjct: 61 LGLKLDKYNCAGALTACS-QSGNLSAGKMIHGLILVYGLGSQVVLTNSLIDMYSKCGQVD 119
Query: 64 TARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCV 123
AR LFD D SW +I GYV Y+E +T+ +M + L F + +
Sbjct: 120 YARILFDHSDKLDGVSWNSLIAGYVQNGKYEELLTILQKMHQNG-----LAFNTYTLGSA 174
Query: 124 LKACVCTMN--MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH 181
LKAC N G +H KLG ++ + +L++ Y K L+DA +F Q+
Sbjct: 175 LKACSSNFNGCKMFGTMLHDHAIKLGLHLDVVVGTALLDMYAKTGSLDDAIQIFDQMVDK 234
Query: 182 NTVVWTAKIVNNCREGHF-----HQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGN 236
N V++ A + ++ ++ N F EM IK + +T+SS+LKAC V +D
Sbjct: 235 NVVMYNAMMAGLLQQETIEDKCAYKALNLFFEMKSCGIKPSMFTYSSLLKACIIV-EDFK 293
Query: 237 CGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGY 296
+Q+HA + K GL SDEY+ L+D+Y + DA F I I AM+ GY
Sbjct: 294 FAKQVHALMCKNGLLSDEYIGSILIDLYSVLGSMMDALLCFNSI-HNLTIVPMTAMIFGY 352
Query: 297 IRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
++NG + A Y + + E + + + +C+++
Sbjct: 353 LQNGEFESALSLFYELLTYEEKPDEFIFSTIMSSCANM 390
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 82/281 (29%), Positives = 137/281 (48%), Gaps = 16/281 (5%)
Query: 59 CGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAW 118
CG +A +LFD+M + ++ +I GYV +++ + + LF + R+ G L +
Sbjct: 14 CGDTRSADKLFDKMSKSNIVTYNSLISGYVQMSNLDKVMILFDK--ARRLG---LKLDKY 68
Query: 119 IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL 178
L AC + N+ GK +HGL+ G + LT SLI+ Y K ++ A +F
Sbjct: 69 NCAGALTACSQSGNLSAGKMIHGLILVYGLGSQVVLTNSLIDMYSKCGQVDYARILFDHS 128
Query: 179 KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC- 237
+ + V W + I + G + ++ ++M + + N+YT S LKAC + C
Sbjct: 129 DKLDGVSWNSLIAGYVQNGKYEELLTILQKMHQNGLAFNTYTLGSALKACS--SNFNGCK 186
Query: 238 --GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
G +H + +K+GL D V L+DMY K L DA ++F+ +VD KN+ +NAM+ G
Sbjct: 187 MFGTMLHDHAIKLGLHLDVVVGTALLDMYAKTGSLDDAIQIFDQMVD-KNVVMYNAMMAG 245
Query: 296 Y-----IRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
I + +A + MK+ GI+ + L AC
Sbjct: 246 LLQQETIEDKCAYKALNLFFEMKSCGIKPSMFTYSSLLKAC 286
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 74/286 (25%), Positives = 127/286 (44%), Gaps = 12/286 (4%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQE-----CITLFAEMMKR 106
LL M+ G LD A Q+FD+M ++ + M+ G + ++ + LF EM
Sbjct: 211 LLDMYAKTGSLDDAIQIFDQMVDKNVVMYNAMMAGLLQQETIEDKCAYKALNLFFEMKSC 270
Query: 107 KKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166
+ + + +LKAC+ + + KQVH L+ K G + + LI+ Y
Sbjct: 271 GIKPSMFTYSS-----LLKACIIVEDFKFAKQVHALMCKNGLLSDEYIGSILIDLYSVLG 325
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
+ DA F+ + V TA I + G F + F E+ K + + FS+++
Sbjct: 326 SMMDALLCFNSIHNLTIVPMTAMIFGYLQNGEFESALSLFYELLTYEEKPDEFIFSTIMS 385
Query: 227 ACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
+C + G Q+ + K+G+ Q + MY K L A F+ + + +I
Sbjct: 386 SCANMGML-RSGEQIQGHATKVGISRFTIFQNSQIWMYAKSGDLYAANLTFQQM-ENPDI 443
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
SW+ M+ ++G +EA +F LMK+ GI+ + IACS
Sbjct: 444 VSWSTMICSNAQHGHAMEALRFFELMKSCGIEPNHFAFLGVLIACS 489
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/280 (23%), Positives = 119/280 (42%), Gaps = 45/280 (16%)
Query: 81 AVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVH 140
MI GY+ +++ ++LF E++ ++ +F ++ +C + G+Q+
Sbjct: 346 TAMIFGYLQNGEFESALSLFYELLTYEEKPDEFIFST-----IMSSCANMGMLRSGEQIQ 400
Query: 141 GLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFH 200
G K+G SR S I Y K L A+ F Q++ + V W+ I +N + GH
Sbjct: 401 GHATKVGISRFTIFQNSQIWMYAKSGDLYAANLTFQQMENPDIVSWSTMICSNAQHGHAM 460
Query: 201 QVFNDFKEMGRERIKKNSYTFSSVLKACGG------------------------------ 230
+ F+ M I+ N + F VL AC
Sbjct: 461 EALRFFELMKSCGIEPNHFAFLGVLIACSHRGLVEEGLRYFDTMEKDYKMKLHVKHCVCV 520
Query: 231 VDDDGNCGRQMHAN--IVKIGLESDEYVQCGLVDMYGKCRLLRD---AERVFELIVDKKN 285
VD G GR A I+++G E + + L+ CR+ +D A+RV + +++ +
Sbjct: 521 VDLLGRAGRLADAESLILRLGFEHEPVMWRALLS---ACRIHKDTVTAQRVAQKVIELEP 577
Query: 286 IASWNAMLVG--YIRNGLYVEATKFLYLMKASGIQIQESL 323
+AS + +L+ Y+ G + A+K LM+ I+ + L
Sbjct: 578 LASASYVLLYNIYMDAGNKLAASKVRTLMEERRIKKEPGL 617
>gi|297596302|ref|NP_001042337.2| Os01g0205200 [Oryza sativa Japonica Group]
gi|56201494|dbj|BAD72991.1| pentatricopeptide repeat protein -like [Oryza sativa Japonica
Group]
gi|255672984|dbj|BAF04251.2| Os01g0205200 [Oryza sativa Japonica Group]
Length = 658
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 83/283 (29%), Positives = 132/283 (46%), Gaps = 8/283 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N LL M+ +C + ++F M ++ SW MI Y + + LF EM G
Sbjct: 124 NALLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEM-----G 178
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ + I L A +++ GK VHG + G + + +L+ Y K +E
Sbjct: 179 LEGIRPDVFAITSALDAFAGNESLKHGKSVHGYAIRNGIEEVLPVANALMEMYVKCGYME 238
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
+A F+F + + +T+ W I R ++ F F EM +++ N+ T + +L A
Sbjct: 239 EARFIFDHVTKKDTISWNTLIGGYSRSNLANEAFTLFNEM-LLQLRPNAVTMACILPAAA 297
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ GR+MHA V+ G D +V LVDMY KC L A R+F+++ + KN+ SW
Sbjct: 298 SLSSLER-GREMHAYAVRRGYLEDNFVANALVDMYVKCGALLLARRLFDMLTN-KNLISW 355
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
M+ GY +G +A MK SGIQ + + ACS
Sbjct: 356 TIMIAGYGMHGRGRDAIALFEQMKGSGIQPDAGSFSAILYACS 398
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 77/256 (30%), Positives = 126/256 (49%), Gaps = 7/256 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ + +++ A +FDEMP RD SW +I G Y + + LF M +
Sbjct: 23 NALISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGCASNGLYDKAVELFVRMWLEGQ- 81
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ ++ V+ ACV + +G VHG + G SL +L++ Y
Sbjct: 82 ----ELDSTTLLSVMPACVQSHYSFIGGVVHGYSVRTGLISETSLGNALLDMYSNCSDWR 137
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
+ +F +++ N V WTA I + R GHF +V F+EMG E I+ + + +S L A
Sbjct: 138 STNKIFRNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGLEGIRPDVFAITSALDAFA 197
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
G ++ G+ +H ++ G+E V L++MY KC + +A +F+ V KK+ SW
Sbjct: 198 G-NESLKHGKSVHGYAIRNGIEEVLPVANALMEMYVKCGYMEEARFIFDH-VTKKDTISW 255
Query: 290 NAMLVGYIRNGLYVEA 305
N ++ GY R+ L EA
Sbjct: 256 NTLIGGYSRSNLANEA 271
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/263 (26%), Positives = 119/263 (45%), Gaps = 18/263 (6%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R I+ L N L+ M+V CG ++ AR +FD + +D SW +I GY E T
Sbjct: 214 RNGIEEVLPVANALMEMYVKCGYMEEARFIFDHVTKKDTISWNTLIGGYSRSNLANEAFT 273
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
LF EM+ + L A + C+L A ++E G+++H + G + + +L
Sbjct: 274 LFNEML------LQLRPNAVTMACILPAAASLSSLERGREMHAYAVRRGYLEDNFVANAL 327
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
++ Y K L A +F L N + WT I G F++M I+ ++
Sbjct: 328 VDMYVKCGALLLARRLFDMLTNKNLISWTIMIAGYGMHGRGRDAIALFEQMKGSGIQPDA 387
Query: 219 YTFSSVLKAC--GGVDDDG----NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRD 272
+FS++L AC G+ D+G N R H K+ ++ C +VD+ L++
Sbjct: 388 GSFSAILYACSHSGLRDEGWRFFNAMRNEHRIEPKL-----KHYAC-MVDLLCHTGNLKE 441
Query: 273 AERVFELIVDKKNIASWNAMLVG 295
A E + + + + W ++L G
Sbjct: 442 AYEFIETMPIEPDSSIWVSLLRG 464
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 87/191 (45%), Gaps = 18/191 (9%)
Query: 136 GKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCR 195
G VHG L K G ++ +LI+FY K +EDA VF ++ + + + W + I
Sbjct: 3 GLVVHGYLVKYGFGAQCAVCNALISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGCAS 62
Query: 196 EGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--------GGVDDDGNCGRQMHANIVK 247
G + + F M E + +S T SV+ AC GGV +H V+
Sbjct: 63 NGLYDKAVELFVRMWLEGQELDSTTLLSVMPACVQSHYSFIGGV---------VHGYSVR 113
Query: 248 IGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATK 307
GL S+ + L+DMY C R ++F + ++KN+ SW AM+ Y R G + +
Sbjct: 114 TGLISETSLGNALLDMYSNCSDWRSTNKIFRNM-EQKNVVSWTAMITSYTRAGHFDKVAG 172
Query: 308 FLYLMKASGIQ 318
M GI+
Sbjct: 173 LFQEMGLEGIR 183
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYI 297
G +H +VK G + V L+ Y K + DA VF+ + +++I SWN+++ G
Sbjct: 3 GLVVHGYLVKYGFGAQCAVCNALISFYAKSNRIEDALMVFDEM-PQRDIISWNSIIGGCA 61
Query: 298 RNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
NGLY +A + M G ++ + + + AC
Sbjct: 62 SNGLYDKAVELFVRMWLEGQELDSTTLLSVMPAC 95
>gi|15240665|ref|NP_199850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171167|sp|Q9FK33.1|PP427_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g50390, chloroplastic; Flags: Precursor
gi|9758921|dbj|BAB09458.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332008555|gb|AED95938.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 701
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 82/275 (29%), Positives = 132/275 (48%), Gaps = 7/275 (2%)
Query: 43 KPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAE 102
+P +NR+LLMHV CG + AR+LFDE+P R+ S+ +I G+V+ +Y E LF
Sbjct: 155 EPEQYMMNRILLMHVKCGMIIDARRLFDEIPERNLYSYYSIISGFVNFGNYVEAFELFKM 214
Query: 103 MMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFY 162
M + F +L+A ++ +GKQ+H KLG N ++ LI+ Y
Sbjct: 215 MWEELSDCETHTF-----AVMLRASAGLGSIYVGKQLHVCALKLGVVDNTFVSCGLIDMY 269
Query: 163 GKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFS 222
K +EDA F + TV W I G+ + +M + + +T S
Sbjct: 270 SKCGDIEDARCAFECMPEKTTVAWNNVIAGYALHGYSEEALCLLYDMRDSGVSIDQFTLS 329
Query: 223 SVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282
+++ + +Q HA++++ G ES+ LVD Y K + A VF+ +
Sbjct: 330 IMIRISTKLAKL-ELTKQAHASLIRNGFESEIVANTALVDFYSKWGRVDTARYVFDKL-P 387
Query: 283 KKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGI 317
+KNI SWNA++ GY +G +A K M A+ +
Sbjct: 388 RKNIISWNALMGGYANHGRGTDAVKLFEKMIAANV 422
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 102/199 (51%), Gaps = 2/199 (1%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
+++AC+ ++ K+V+G + G + ++ + K + DA +F ++ N
Sbjct: 129 LVEACIRLKSIRCVKRVYGFMMSNGFEPEQYMMNRILLMHVKCGMIIDARRLFDEIPERN 188
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
+ + I G++ + F FK M E ++TF+ +L+A G+ G+Q+H
Sbjct: 189 LYSYYSIISGFVNFGNYVEAFELFKMMWEELSDCETHTFAVMLRASAGLGSI-YVGKQLH 247
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
+K+G+ + +V CGL+DMY KC + DA FE + +K +A WN ++ GY +G
Sbjct: 248 VCALKLGVVDNTFVSCGLIDMYSKCGDIEDARCAFECMPEKTTVA-WNNVIAGYALHGYS 306
Query: 303 VEATKFLYLMKASGIQIQE 321
EA LY M+ SG+ I +
Sbjct: 307 EEALCLLYDMRDSGVSIDQ 325
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/245 (24%), Positives = 110/245 (44%), Gaps = 11/245 (4%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ CG ++ AR F+ MP + +W +I GY +E + L +M R G
Sbjct: 265 LIDMYSKCGDIEDARCAFECMPEKTTVAWNNVIAGYALHGYSEEALCLLYDM--RDSGVS 322
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+ F I++ + +EL KQ H L + G I +L++FY K+ ++ A
Sbjct: 323 IDQFTLSIMI---RISTKLAKLELTKQAHASLIRNGFESEIVANTALVDFYSKWGRVDTA 379
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG-- 229
+VF +L R N + W A + G F++M + N TF +VL AC
Sbjct: 380 RYVFDKLPRKNIISWNALMGGYANHGRGTDAVKLFEKMIAANVAPNHVTFLAVLSACAYS 439
Query: 230 GVDDDGNCGRQMHANIVKI-GLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
G+ + G ++ ++ ++ G++ ++++ G+ LL +A K +
Sbjct: 440 GLSEQ---GWEIFLSMSEVHGIKPRAMHYACMIELLGRDGLLDEAIAFIRRAPLKTTVNM 496
Query: 289 WNAML 293
W A+L
Sbjct: 497 WAALL 501
>gi|242082860|ref|XP_002441855.1| hypothetical protein SORBIDRAFT_08g003540 [Sorghum bicolor]
gi|241942548|gb|EES15693.1| hypothetical protein SORBIDRAFT_08g003540 [Sorghum bicolor]
Length = 501
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 80/272 (29%), Positives = 125/272 (45%), Gaps = 7/272 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ ++ CG+ D AR +FD M R SW MI GY D + + LF++M ++G
Sbjct: 95 NILMNLYTKCGRNDCARDVFDAMSFRSIVSWNTMIAGYTCHGDGLQALKLFSKM--HQEG 152
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ F +C AC +Q+H + KL N + + ++ Y K +
Sbjct: 153 TRMSEFTLSSTLC---ACAAENATTECRQLHTIAIKLALDSNSFVGTAFLDVYAKCNMIN 209
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
DA VF ++ V W+ + G F+ RE I+ +T S++L C
Sbjct: 210 DACLVFEKIPEKTAVTWSTLFAGLVQNGLHKDALRLFQSSQREGIQLTEFTLSAILSTCA 269
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ GRQ+HA I+K G + +V LVD+Y +C + +A VF + KN+ W
Sbjct: 270 SLALMIE-GRQLHAVIIKYGFNGNLFVASSLVDVYARCGQIEEAYLVFA-DMKHKNVVLW 327
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQE 321
NAM+ + R+G EA M+ SGI E
Sbjct: 328 NAMIASFTRHGKSWEAMILFEKMQQSGISPNE 359
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 107/216 (49%), Gaps = 8/216 (3%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFY---GKFRCLEDADFVFSQLK 179
+L+ C ++ +GK HGL LG + + L+N Y G+ C D VF +
Sbjct: 62 LLQQCAKRRSLLVGKGCHGLAIHLGLATDTITCNILMNLYTKCGRNDCARD---VFDAMS 118
Query: 180 RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGR 239
+ V W I G Q F +M +E + + +T SS L AC + C R
Sbjct: 119 FRSIVSWNTMIAGYTCHGDGLQALKLFSKMHQEGTRMSEFTLSSTLCACAAENATTEC-R 177
Query: 240 QMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRN 299
Q+H +K+ L+S+ +V +D+Y KC ++ DA VFE I +K + +W+ + G ++N
Sbjct: 178 QLHTIAIKLALDSNSFVGTAFLDVYAKCNMINDACLVFEKIPEKTAV-TWSTLFAGLVQN 236
Query: 300 GLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
GL+ +A + + GIQ+ E ++ + C+S++
Sbjct: 237 GLHKDALRLFQSSQREGIQLTEFTLSAILSTCASLA 272
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 89/178 (50%), Gaps = 5/178 (2%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L ++ C ++ A +F+++P + +W+ + G V +++ + LF +++G
Sbjct: 198 FLDVYAKCNMINDACLVFEKIPEKTAVTWSTLFAGLVQNGLHKDALRLFQS--SQREGIQ 255
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
L F + +L C M G+Q+H ++ K G + N+ + SL++ Y + +E+A
Sbjct: 256 LTEFT---LSAILSTCASLALMIEGRQLHAVIIKYGFNGNLFVASSLVDVYARCGQIEEA 312
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
VF+ +K N V+W A I + R G + F++M + I N T+ S++ CG
Sbjct: 313 YLVFADMKHKNVVLWNAMIASFTRHGKSWEAMILFEKMQQSGISPNEVTYVSMMSMCG 370
Score = 45.4 bits (106), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYI 297
G+ H + +GL +D L+++Y KC A VF+ + ++I SWN M+ GY
Sbjct: 75 GKGCHGLAIHLGLATDTITCNILMNLYTKCGRNDCARDVFDAM-SFRSIVSWNTMIAGYT 133
Query: 298 RNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISAS 337
+G ++A K M G ++ E ++ AC++ +A+
Sbjct: 134 CHGDGLQALKLFSKMHQEGTRMSEFTLSSTLCACAAENAT 173
>gi|347954478|gb|AEP33739.1| chlororespiratory reduction 21, partial [Matthiola sinuata]
Length = 794
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 89/344 (25%), Positives = 166/344 (48%), Gaps = 16/344 (4%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFL-NRLLLMHVSC 59
MD + I ++Y +++ C +++D ++ I K+ + ++ +L++ + C
Sbjct: 25 MDYRNIRIGPEIYGEILQGCVYERDLCTGQQIHAQILKKGDFYARNEYIETKLVIFYAKC 84
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AW 118
L+ A+ LF ++ +R+ SWA +I + + + F EM++ +FP +
Sbjct: 85 DALEIAQVLFSKLRVRNVFSWAAIIGVKCRIGLGEGALMGFVEMLENG------IFPDNF 138
Query: 119 IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL 178
++ V KAC G+ VHG + K G + + SL + YGK L+DA VF +
Sbjct: 139 VVPNVCKACGALQWSRFGRGVHGYVAKAGLHHCVFVASSLADMYGKCGVLDDARKVFDYI 198
Query: 179 KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC---GGVDDDG 235
N V W A +V + G + EM +E I+ T S+ L A GG+++
Sbjct: 199 PDRNAVAWNALMVGYVQNGMNEEAIRLLSEMRKEGIEPTRVTVSTCLSASANMGGIEE-- 256
Query: 236 NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
G+Q HA + GLE D + +++ Y K L+ AE +F+ +++ K++ +WN ++ G
Sbjct: 257 --GKQSHAIAIVNGLELDNILGTSILNFYCKVGLIEYAEMIFDGMIE-KDVVTWNLLISG 313
Query: 296 YIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKI 339
Y++ GL EA LM+ ++ ++ L A +S K+
Sbjct: 314 YVQQGLVEEAIYMCQLMRRENLKFDCVTLSTLMSAATSTQNLKL 357
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 81/264 (30%), Positives = 133/264 (50%), Gaps = 9/264 (3%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+ CG LD AR++FD +P R+ +W ++VGYV +E I L +EM RK+G +
Sbjct: 181 MYGKCGVLDDARKVFDYIPDRNAVAWNALMVGYVQNGMNEEAIRLLSEM--RKEG----I 234
Query: 115 FPAWIIVCV-LKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADF 173
P + V L A +E GKQ H + G + L S++NFY K +E A+
Sbjct: 235 EPTRVTVSTCLSASANMGGIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIEYAEM 294
Query: 174 VFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDD 233
+F + + V W I ++G + + M RE +K + T S+++ A +
Sbjct: 295 IFDGMIEKDVVTWNLLISGYVQQGLVEEAIYMCQLMRRENLKFDCVTLSTLMSAATSTQN 354
Query: 234 DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
G+++ ++ GLESD + VDMY KC + +A++VF+ V +K++ WN +L
Sbjct: 355 L-KLGKEIQCYCIRHGLESDIVLASTAVDMYAKCGSIVNAKKVFDSTV-QKDLILWNTLL 412
Query: 294 VGYIRNGLYVEATKFLYLMKASGI 317
Y +GL EA + Y M+ +
Sbjct: 413 SAYADSGLSGEALRLFYEMQLESV 436
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 62/285 (21%), Positives = 120/285 (42%), Gaps = 38/285 (13%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
+L + G ++ A +FD M +D +W ++I GYV +E I + ++M+R+
Sbjct: 279 ILNFYCKVGLIEYAEMIFDGMIEKDVVTWNLLISGYVQQGLVEEAIYM-CQLMRREN--- 334
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
L F + ++ A T N++LGK++ + G +I L + ++ Y K + +A
Sbjct: 335 -LKFDCVTLSTLMSAATSTQNLKLGKEIQCYCIRHGLESDIVLASTAVDMYAKCGSIVNA 393
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
VF + + ++W + G + F EM E + N T+
Sbjct: 394 KKVFDSTVQKDLILWNTLLSAYADSGLSGEALRLFYEMQLESVPPNVITW---------- 443
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
N++ + L ++ G V+ + L + +F N+ SW
Sbjct: 444 ------------NLIILSL-----LRNGQVNEAKEMFLQMQSSGIF------PNLISWTT 480
Query: 292 MLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
M+ G ++NG EA FL M+ S ++ I AC+++++
Sbjct: 481 MMNGLVQNGCSEEAILFLRKMQESRLRPNAFTITVALSACANLAS 525
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 86/197 (43%), Gaps = 10/197 (5%)
Query: 41 NIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMP----LRDFNSWAVMIVGYVDVADYQEC 96
++ P ++ N ++L + GQ++ A+++F +M + SW M+ G V +E
Sbjct: 435 SVPPNVITWNLIILSLLRNGQVNEAKEMFLQMQSSGIFPNLISWTTMMNGLVQNGCSEEA 494
Query: 97 ITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGS-SRNISLT 155
I +M + + L A+ I L AC ++ G+ +HG + + S + S+
Sbjct: 495 ILFLRKMQESR-----LRPNAFTITVALSACANLASLHFGRSIHGYIIRNQQYSFSASIE 549
Query: 156 GSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIK 215
SL++ Y K + A+ VF ++ A I G + ++ + +K
Sbjct: 550 TSLVDMYAKCGDINKAERVFGSKLCSELPLYNAMISAYALYGKVREAITLYRSLEDGGVK 609
Query: 216 KNSYTFSSVLKACGGVD 232
++ T +S+L G D
Sbjct: 610 PDNITITSLLSCNYGRD 626
>gi|296090396|emb|CBI40215.3| unnamed protein product [Vitis vinifera]
Length = 653
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 90/284 (31%), Positives = 138/284 (48%), Gaps = 11/284 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLR-DFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGH 110
++ CG+LD A QL++ +P + + SWA MI G+V + +E + L E+ +
Sbjct: 232 MIAAFAQCGRLDDAIQLYERVPEQTNSASWAAMIAGFVQNEESREALELLIELHRSGSVP 291
Query: 111 MLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
F + L AC ++E+G+ +H L K G N + LI+ Y K +ED
Sbjct: 292 SDSSFTS-----ALSACANIGDVEIGRVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVED 346
Query: 171 ADFVFSQLK--RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
VF ++ + + V WTA I + GH + F +M IK N T +S+L AC
Sbjct: 347 GSHVFRTIRMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSLLSAC 406
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
G + G Q HA I K+G ++ +V L+ MY KC D VFE + + ++ +
Sbjct: 407 GNLGAI-KLGEQFHALIFKLGFDTFLFVGNSLITMYFKCGY-EDGFCVFEEM-PEHDLIT 463
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
WNA+LVG +NGL EA K M+ GI + + ACS
Sbjct: 464 WNAVLVGCAQNGLGKEAIKIFEQMEVEGILPDQMSFLGVLCACS 507
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/292 (25%), Positives = 132/292 (45%), Gaps = 15/292 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N ++ +V G L AR+LFDEMP ++ SW ++ GY E LF +M +R
Sbjct: 136 NAMISGYVQNGDLKNARKLFDEMPEKNVASWNSVVTGYCHCYRMSEARELFDQMPERNSV 195
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+++ ++ ++ + + K+ +RN ++I + + L+
Sbjct: 196 SWMVMISGYV------------HISDYWEAWDVFVKMCRTRNEYSWTTMIAAFAQCGRLD 243
Query: 170 DADFVFSQLKRH-NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
DA ++ ++ N+ W A I + + E+ R + +F+S L AC
Sbjct: 244 DAIQLYERVPEQTNSASWAAMIAGFVQNEESREALELLIELHRSGSVPSDSSFTSALSAC 303
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELI-VDKKNIA 287
+ D GR +H+ +K G + + YV GL+ MY KC + D VF I + K+++
Sbjct: 304 ANIGDV-EIGRVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRMPKRDVV 362
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKI 339
SW A++ Y++ G A M A GI+ + + L AC ++ A K+
Sbjct: 363 SWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSLLSACGNLGAIKL 414
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 87/294 (29%), Positives = 136/294 (46%), Gaps = 25/294 (8%)
Query: 49 LNRLLLMHVSCGQLDTARQLFD--EMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR 106
+N L+ M+ CG ++ +F MP RD SW +I YV + + LF +M+ R
Sbjct: 331 MNGLISMYAKCGNVEDGSHVFRTIRMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLAR 390
Query: 107 K-KGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
K + L V +L AC ++LG+Q H L+FKLG + + SLI Y F
Sbjct: 391 GIKPNQLTV------TSLLSACGNLGAIKLGEQFHALIFKLGFDTFLFVGNSLITMY--F 442
Query: 166 RC-LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
+C ED VF ++ H+ + W A +V + G + F++M E I + +F V
Sbjct: 443 KCGYEDGFCVFEEMPEHDLITWNAVLVGCAQNGLGKEAIKIFEQMEVEGILPDQMSFLGV 502
Query: 225 LKAC--GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282
L AC G+ D+G ++ K G+ Y +VD+ G+ L +AE + E +
Sbjct: 503 LCACSHAGLVDEG--WAHFNSMTQKYGIMPLVYHYTCMVDLLGRAGYLSEAEALIENMPV 560
Query: 283 KKNIASWNAMLVG---YIRNGLYVEATK----FLYLMKASGIQIQESLINDLRI 329
K + W A+L + N L + K F L +G IQ +I +LRI
Sbjct: 561 KPDSVIWEALLGACRIHRNNELLYHSEKLAVVFGILSTPNGSPIQ--IIKNLRI 612
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 129/280 (46%), Gaps = 21/280 (7%)
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI 119
G+++ AR++F+EM RD SW MI GY E LF + + W
Sbjct: 53 GRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFDAFVGKN-------IRTWT 105
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
I+ L +E ++V F+ + RN+ ++I+ Y + L++A +F ++
Sbjct: 106 IL--LTGYAKEGRIEEAREV----FESMTERNVVSWNAMISGYVQNGDLKNARKLFDEMP 159
Query: 180 RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGR 239
N W + + C H +++ ++ +E+ + ++NS ++ ++ + D
Sbjct: 160 EKNVASWNSVVTGYC---HCYRM-SEARELFDQMPERNSVSWMVMISGYVHISDYW---- 211
Query: 240 QMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRN 299
+ VK+ +EY ++ + +C L DA +++E + ++ N ASW AM+ G+++N
Sbjct: 212 EAWDVFVKMCRTRNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTNSASWAAMIAGFVQN 271
Query: 300 GLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKI 339
EA + L + SG +S AC++I +I
Sbjct: 272 EESREALELLIELHRSGSVPSDSSFTSALSACANIGDVEI 311
>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 809
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 81/282 (28%), Positives = 144/282 (51%), Gaps = 9/282 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ CG L TAR LFD M R+ SW MI YV + +E + +F +M+
Sbjct: 277 LVDMYAKCGSLKTARLLFDGMLERNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEG---- 332
Query: 112 LLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
V P + ++ L AC ++E G+ +H L +L RN+S+ SLI+ Y K + ++
Sbjct: 333 --VKPTDVSVMGALHACADLGDLERGRFIHKLSVELELDRNVSVVNSLISMYCKCKEVDT 390
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
A +F +L+ V W A I+ + G + N F +M +K +++T+ SV+ A
Sbjct: 391 AASMFGKLQSRTIVSWNAMILGFAQNGRPIEALNYFSQMQARTVKPDTFTYVSVITAIAE 450
Query: 231 VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWN 290
+ + + +H +++ L+ + +V LVDMY KC + A +F+++ ++++ +WN
Sbjct: 451 LSITHH-AKWIHGVVMRNCLDKNVFVTTALVDMYAKCGAIMIARLIFDMM-SERHVTTWN 508
Query: 291 AMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
AM+ GY +G+ A + M+ I+ + ACS
Sbjct: 509 AMIDGYGTHGIGKAALELFEEMQKGTIRPNGVTFLSVISACS 550
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/288 (25%), Positives = 132/288 (45%), Gaps = 7/288 (2%)
Query: 47 LFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR 106
LF +L+ + G +D A ++F+ + + + M+ G+ V+D + + F M
Sbjct: 70 LFQTKLVSLFCRYGSVDEAARVFEPIDKKLNVLYYTMLKGFAKVSDLDKALKFFVRMRDD 129
Query: 107 KKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166
+ ++ F +LK C + +GK++HGLL K G S ++ L N Y K R
Sbjct: 130 EVEPVVYNF-----TYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCR 184
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
+ +A VF ++ + V W + + G M E +K + T SVL
Sbjct: 185 QVHEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVNLMCEENLKPSFITIVSVLP 244
Query: 227 ACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
A + G+++H ++ G +S + LVDMY KC L+ A +F+ +++ +N+
Sbjct: 245 AVSALRLI-RIGKEIHGYAMRAGFDSLVNIATALVDMYAKCGSLKTARLLFDGMLE-RNV 302
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
SWN+M+ Y++N EA M G++ + + AC+ +
Sbjct: 303 VSWNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVSVMGALHACADL 350
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 106/249 (42%), Gaps = 13/249 (5%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
+N L+ M+ C ++DTA +F ++ R SW MI+G+ E + F++M R
Sbjct: 375 VNSLISMYCKCKEVDTAASMFGKLQSRTIVSWNAMILGFAQNGRPIEALNYFSQMQART- 433
Query: 109 GHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
V P + V V+ A K +HG++ + +N+ +T +L++ Y K
Sbjct: 434 -----VKPDTFTYVSVITAIAELSITHHAKWIHGVVMRNCLDKNVFVTTALVDMYAKCGA 488
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
+ A +F + + W A I G F+EM + I+ N TF SV+ A
Sbjct: 489 IMIARLIFDMMSERHVTTWNAMIDGYGTHGIGKAALELFEEMQKGTIRPNGVTFLSVISA 548
Query: 228 C---GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
C G V+ C M N I D Y +VD+ G+ L +A + K
Sbjct: 549 CSHSGLVEAGLKCFHMMKEN-YSIEPSMDHY--GAMVDLLGRAGRLNEAWDFIMQMPVKP 605
Query: 285 NIASWNAML 293
+ + AML
Sbjct: 606 AVNVYGAML 614
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 94/184 (51%), Gaps = 3/184 (1%)
Query: 129 CTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTA 188
C+ EL + + L+FK G + L++ + ++ +++A VF + + V++
Sbjct: 47 CSSLKEL-RHILPLIFKNGLYQEHLFQTKLVSLFCRYGSVDEAARVFEPIDKKLNVLYYT 105
Query: 189 KIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKI 248
+ + + F M + ++ Y F+ +LK CG + + G+++H +VK
Sbjct: 106 MLKGFAKVSDLDKALKFFVRMRDDEVEPVVYNFTYLLKVCGD-EAELRVGKEIHGLLVKS 164
Query: 249 GLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKF 308
G D + GL +MY KCR + +A +VF+ + ++++ SWN ++ GY +NG+ A +
Sbjct: 165 GFSLDLFAMTGLENMYAKCRQVHEARKVFDRM-PERDLVSWNTIVAGYSQNGMARMALEM 223
Query: 309 LYLM 312
+ LM
Sbjct: 224 VNLM 227
>gi|296084465|emb|CBI25024.3| unnamed protein product [Vitis vinifera]
Length = 621
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 86/296 (29%), Positives = 146/296 (49%), Gaps = 7/296 (2%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
RV ++ + N L+ M+ CG +++AR+LFDEMP+R SW M+ + D ++ +
Sbjct: 75 RVGLRADTITSNMLMNMYSKCGLVESARKLFDEMPVRSLVSWNTMVGSHTQNGDCEKALV 134
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
LF +M +K+G F +VC A C KQ+HG K N+ + +L
Sbjct: 135 LFMQM--QKEGTSCSEFTVSSVVCACAAKCCVFEC---KQLHGFALKTALDSNVFVGTAL 189
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
++ Y K ++DA+ VF + + V W++ + + + + F ++ N
Sbjct: 190 LDVYAKCGLVKDANLVFECMPERSDVTWSSMVAGYVQNELYEEALVLFHRAQAMGLEHNQ 249
Query: 219 YTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE 278
+T SS L AC G+Q+ A K G+ S+ +V L+DMY KC ++ +A VF
Sbjct: 250 FTISSALSACAARAALIE-GKQVQAVSCKTGIGSNIFVISSLIDMYAKCGIIEEAYTVFS 308
Query: 279 LIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
V++KN+ WNA+L G+ R+ +EA + M+ GI + + ACS +
Sbjct: 309 -SVEEKNVVLWNAILSGFSRHVRSLEAMIYFEKMQQMGICPNDITYISVLSACSHL 363
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 97/183 (53%), Gaps = 2/183 (1%)
Query: 136 GKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCR 195
G H + ++G + + L+N Y K +E A +F ++ + V W + ++ +
Sbjct: 66 GMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMPVRSLVSWNTMVGSHTQ 125
Query: 196 EGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEY 255
G + F +M +E + +T SSV+ AC C +Q+H +K L+S+ +
Sbjct: 126 NGDCEKALVLFMQMQKEGTSCSEFTVSSVVCACAAKCCVFEC-KQLHGFALKTALDSNVF 184
Query: 256 VQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKAS 315
V L+D+Y KC L++DA VFE + ++ ++ +W++M+ GY++N LY EA + +A
Sbjct: 185 VGTALLDVYAKCGLVKDANLVFECMPERSDV-TWSSMVAGYVQNELYEEALVLFHRAQAM 243
Query: 316 GIQ 318
G++
Sbjct: 244 GLE 246
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 76/292 (26%), Positives = 128/292 (43%), Gaps = 19/292 (6%)
Query: 8 ITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQ 67
+++ + C K C F+ F L + + + LL ++ CG + A
Sbjct: 151 VSSVVCACAAKCCVFECKQLHGFAL------KTALDSNVFVGTALLDVYAKCGLVKDANL 204
Query: 68 LFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKAC 127
+F+ MP R +W+ M+ GYV Y+E + LF + M L + I L AC
Sbjct: 205 VFECMPERSDVTWSSMVAGYVQNELYEEALVLF-----HRAQAMGLEHNQFTISSALSAC 259
Query: 128 VCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWT 187
+ GKQV + K G NI + SLI+ Y K +E+A VFS ++ N V+W
Sbjct: 260 AARAALIEGKQVQAVSCKTGIGSNIFVISSLIDMYAKCGIIEEAYTVFSSVEEKNVVLWN 319
Query: 188 AKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC---GGVDDDGNCGRQMHAN 244
A + R + F++M + I N T+ SVL AC G V+ GR+
Sbjct: 320 AILSGFSRHVRSLEAMIYFEKMQQMGICPNDITYISVLSACSHLGLVEK----GRKYFDL 375
Query: 245 IVKIGLESDEYVQCG-LVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
++++ S + +VD+ G+ LL +A+ + + + W ++L
Sbjct: 376 MIRVHNVSPNVLHYSCMVDILGRAGLLHEAKDFIDRMPFDATASMWGSLLAS 427
>gi|410109991|gb|AFV61075.1| pentatricopeptide repeat-containing protein 81, partial [Lantana
macropoda]
Length = 377
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 80/289 (27%), Positives = 139/289 (48%), Gaps = 10/289 (3%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEM-PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRK 107
LN + + CG ++ A+++FD RD +W M+ Y++ + +F EM++++
Sbjct: 83 LNATITAYAECGCIEDAKRVFDSSNGYRDLVTWNSMLAAYLEHNLXEYGFNIFLEMVRQR 142
Query: 108 KGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF-- 165
L A+ + V+ AC LGK +HGL+ K G ++ +L++ Y K
Sbjct: 143 -----LEMDAYTLSSVISACFEDTQQSLGKSLHGLVIKKGLGEVTQISNALVSMYLKSNS 197
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
R +EDA +F + + V W + + G F+ + + + + YTF++VL
Sbjct: 198 RNVEDALKIFXHINVKDLVSWNTILTGLSQNGLSENALRLFQNIHLDHLLXDQYTFAAVL 257
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
++C + GRQ+H +VK G E +EYV L+ MY KC ++ DA FE K+
Sbjct: 258 RSCSDLATL-QLGRQIHVLVVKSGFEGNEYVASALIFMYSKCGIIEDAWESFE-SSHKET 315
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
+WN+++ Y ++G A YLM+ I++ ACS I
Sbjct: 316 SVTWNSIIFAYAQHGQGKIALDLFYLMRERRIKLDHVTFVAALTACSHI 364
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 72/246 (29%), Positives = 117/246 (47%), Gaps = 12/246 (4%)
Query: 68 LFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEM-MKRKKGHMLLVFPAWIIVCVLKA 126
+F M R+ SW +I GY ++ + + C++LF M M + P +L
Sbjct: 1 VFKYMRERNAVSWNALIGGYAEMGNLERCVSLFVGMEMDGVRVDDATFAP------LLTL 54
Query: 127 CVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVF-SQLKRHNTVV 185
+ +L +Q+HG + K G ++ + I Y + C+EDA VF S + V
Sbjct: 55 LNDAESYDLTRQLHGKIMKRGLEYENTVLNATITAYAECGCIEDAKRVFDSSNGYRDLVT 114
Query: 186 WTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANI 245
W + + FN F EM R+R++ ++YT SSV+ AC D + G+ +H +
Sbjct: 115 WNSMLAAYLEHNLXEYGFNIFLEMVRQRLEMDAYTLSSVISACFE-DTQQSLGKSLHGLV 173
Query: 246 VKIGLESDEYVQCGLVDMYGK--CRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYV 303
+K GL + LV MY K R + DA ++F I + K++ SWN +L G +NGL
Sbjct: 174 IKKGLGEVTQISNALVSMYLKSNSRNVEDALKIFXHI-NVKDLVSWNTILTGLSQNGLSE 232
Query: 304 EATKFL 309
A +
Sbjct: 233 NALRLF 238
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 81/183 (44%), Gaps = 8/183 (4%)
Query: 62 LDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIV 121
++ A ++F + ++D SW ++ G + + LF + H+L +
Sbjct: 200 VEDALKIFXHINVKDLVSWNTILTGLSQNGLSENALRLFQNI---HLDHLLX--DQYTFA 254
Query: 122 CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH 181
VL++C ++LG+Q+H L+ K G N + +LI Y K +EDA F +
Sbjct: 255 AVLRSCSDLATLQLGRQIHVLVVKSGFEGNEYVASALIFMYSKCGIIEDAWESFESSHKE 314
Query: 182 NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC---GGVDDDGNCG 238
+V W + I + G + F M RIK + TF + L AC G V++ N
Sbjct: 315 TSVTWNSIIFAYAQHGQGKIALDLFYLMRERRIKLDHVTFVAALTACSHIGLVEEGLNLL 374
Query: 239 RQM 241
R M
Sbjct: 375 RSM 377
>gi|125544635|gb|EAY90774.1| hypothetical protein OsI_12377 [Oryza sativa Indica Group]
Length = 653
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 89/291 (30%), Positives = 145/291 (49%), Gaps = 20/291 (6%)
Query: 45 TLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMM 104
+ + +L + SC + D AR++FD MP R+ +W +I GY +E I LF + M
Sbjct: 107 STILATAVLSFYASCREPDLARKVFDGMPRRNAVTWNALIKGYAQAGRREEAILLFRD-M 165
Query: 105 KRKKGHML---LVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINF 161
KR+ H+ FPA ++ + + +ELG +H + K G R+ + SL++
Sbjct: 166 KREGSHVAPDRYTFPA-LLSGIGREGGSGRTLELGGALHAHVIKAGLERDPFVGASLVSL 224
Query: 162 YGKFRCLEDADFVFSQLKRHNTVVWTAKIVN--NC--REGHFHQVFNDFKEMGRERIKKN 217
Y R LEDA F Q+ + +VW++ I NC EG FN M + IK
Sbjct: 225 YAARRTLEDAKVAFDQVGSSDPIVWSSMISAYVNCEEEEGALLIFFN----MLCQDIKPT 280
Query: 218 SYTFSSVLKACG--GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAER 275
+ +S+V CG G+ + G+Q+HA+ +K E D + L+ MY C + DA++
Sbjct: 281 QFVYSTVFSVCGRMGILE---MGKQVHAHSLKSNTEKDAAMFNALLTMYSDCGCINDAQK 337
Query: 276 VFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQE-SLIN 325
VF D N+ S+N+M+ ++G EA + MK +G+ E +L+N
Sbjct: 338 VFS-SNDCVNVISYNSMISALGQHGYPKEALEHFRQMKFAGLMPDEVTLLN 387
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 85/177 (48%), Gaps = 15/177 (8%)
Query: 132 NMELGKQVHGLLFK---LGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTA 188
++ LG Q+H LG + L ++++FY R + A VF + R N V W A
Sbjct: 85 SLGLGAQLHAQAVVRGFLGGDDSTILATAVLSFYASCREPDLARKVFDGMPRRNAVTWNA 144
Query: 189 KIVNNCREGHFHQVFNDFKEMGRE--RIKKNSYTFSSVLKACGGVDDDGNCGR------Q 240
I + G + F++M RE + + YTF ++L G+ +G GR
Sbjct: 145 LIKGYAQAGRREEAILLFRDMKREGSHVAPDRYTFPALLS---GIGREGGSGRTLELGGA 201
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYI 297
+HA+++K GLE D +V LV +Y R L DA+ F+ + I W++M+ Y+
Sbjct: 202 LHAHVIKAGLERDPFVGASLVSLYAARRTLEDAKVAFDQVGSSDPIV-WSSMISAYV 257
>gi|357507131|ref|XP_003623854.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498869|gb|AES80072.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 865
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 82/288 (28%), Positives = 142/288 (49%), Gaps = 8/288 (2%)
Query: 44 PTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEM 103
P+ L L RL+ + ++ G + ARQLFD +P D + + +I E I +++ +
Sbjct: 97 PSHLGL-RLIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSL 155
Query: 104 MKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYG 163
+R + VF + KAC + + K+VH + G ++ + +LI+ YG
Sbjct: 156 QERGIKPDMPVF-----LAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYG 210
Query: 164 KFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSS 223
K +C+E A VF L + V WT+ + G + + F+EMG +K N T SS
Sbjct: 211 KCKCVEGARRVFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSS 270
Query: 224 VLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
+L AC + D + G+++H V+ G+ + +V LV +Y KC +R+A VF+L+
Sbjct: 271 ILPACAELKDLKS-GKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLM-PH 328
Query: 284 KNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
+++ SWN +L Y +N Y + M G++ E+ N + C
Sbjct: 329 RDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGC 376
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/287 (24%), Positives = 119/287 (41%), Gaps = 44/287 (15%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEM-- 103
L + L+ ++ C + AR +FD MP RD SW ++ Y +Y++ +LF +M
Sbjct: 300 LFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSR 359
Query: 104 ----------------------------MKRKKGHMLLVFPAWIIVCVLKACVCTMNMEL 135
M RK M I +L AC + N+ +
Sbjct: 360 DGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSILPACSFSENLRM 419
Query: 136 GKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCR 195
GK++H +F+ +++ T +L+ Y K L + VF ++R + V W I+ N
Sbjct: 420 GKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRKDVVAWNTMIIANAM 479
Query: 196 EGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG-------GVDDDGNCGRQMHANIVKI 248
G+ + F +M R++ NS TF+ VL C GV + GR H
Sbjct: 480 HGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRD-HL----- 533
Query: 249 GLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
+E D +VD+Y + L +A + + + + ++W A+L
Sbjct: 534 -VEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAA 579
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 78/362 (21%), Positives = 144/362 (39%), Gaps = 45/362 (12%)
Query: 8 ITTDM--YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTA 65
I DM + K C D+ E+ + R + + N L+ + C ++ A
Sbjct: 160 IKPDMPVFLAAAKACAVSGDALRVKEVHDDA-TRCGVMSDVFVGNALIHAYGKCKCVEGA 218
Query: 66 RQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLK 125
R++FD++ +RD SW + YV ++ + +F EM G + + +L
Sbjct: 219 RRVFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREM-----GWSGVKPNPMTVSSILP 273
Query: 126 ACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVV 185
AC +++ GK++HG + G N+ + +L++ Y K + +A VF + + V
Sbjct: 274 ACAELKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVS 333
Query: 186 WTA----------------------------------KIVNNCRE-GHFHQVFNDFKEMG 210
W ++ C E G + F++M
Sbjct: 334 WNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQ 393
Query: 211 RERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLL 270
+ K N T SS+L AC ++ G+++H + + D L+ MY KC L
Sbjct: 394 KMGFKPNEITISSILPAC-SFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDL 452
Query: 271 RDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIA 330
+ VF+++ +K++ +WN M++ +G EA M S +Q +
Sbjct: 453 NLSRNVFDMM-RRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSG 511
Query: 331 CS 332
CS
Sbjct: 512 CS 513
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 68/134 (50%), Gaps = 5/134 (3%)
Query: 201 QVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGL 260
++++ +E G IK + F + KAC V D +++H + + G+ SD +V L
Sbjct: 150 KIYSSLQERG---IKPDMPVFLAAAKACA-VSGDALRVKEVHDDATRCGVMSDVFVGNAL 205
Query: 261 VDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQ 320
+ YGKC+ + A RVF+ +V +++ SW ++ Y++ G + M SG++
Sbjct: 206 IHAYGKCKCVEGARRVFDDLV-VRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPN 264
Query: 321 ESLINDLRIACSSI 334
++ + AC+ +
Sbjct: 265 PMTVSSILPACAEL 278
>gi|255586261|ref|XP_002533783.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526284|gb|EEF28596.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 672
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 86/290 (29%), Positives = 144/290 (49%), Gaps = 7/290 (2%)
Query: 47 LFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR 106
L N L+ M+ GQL A +LF+ MP + +W MI G+V E LF+EM+
Sbjct: 109 LVANALVAMYSKFGQLSDALKLFNTMPDTNVVTWNGMIAGFVQNGFMDEASLLFSEMISA 168
Query: 107 KKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166
+ F ++ L + + +++ GK++HG + + G + ++ L +LI+ Y K R
Sbjct: 169 GVSPDSITFASF-----LPSVTESASLKQGKEIHGYILRHGIALDVFLKSALIDIYFKCR 223
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
+ A +F Q + VV TA I G + F+ + E++ N+ T +SVL
Sbjct: 224 DVGMACKIFKQSTNVDIVVCTAIISGYVLNGLNNDALEIFRWLLEEKMSPNAVTLASVLP 283
Query: 227 ACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
AC G+ N G+++HANI+K GL+ +V ++DMY KC L A ++F + +K +
Sbjct: 284 ACAGLATL-NLGKELHANILKHGLDERRHVGSAIMDMYAKCGRLDLAYQIFRRMPEKDAV 342
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
WNA++ +NG EA M G+ I+ AC+++ A
Sbjct: 343 C-WNAIITNCSQNGKPQEAIDLFRQMGREGLSYDCVSISAALSACANLPA 391
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/288 (25%), Positives = 139/288 (48%), Gaps = 11/288 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+ L+ ++ G ++ AR+LFD+MP +D W VM+ G+V + + +F +M +
Sbjct: 11 SSLIKLYAENGCIEDARRLFDKMPNKDCVLWNVMLNGFVKCGEPNSAVKVFEDMRNCQTK 70
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ F + + +C +A E G Q+HGL+ G + + +L+ Y KF L
Sbjct: 71 PNSITFASVLSICASEALS-----EFGNQLHGLVISCGFHFDPLVANALVAMYSKFGQLS 125
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
DA +F+ + N V W I + G + F EM + +S TF+S L +
Sbjct: 126 DALKLFNTMPDTNVVTWNGMIAGFVQNGFMDEASLLFSEMISAGVSPDSITFASFLPS-- 183
Query: 230 GVDDDGNC--GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
V + + G+++H I++ G+ D +++ L+D+Y KCR + A ++F+ + +I
Sbjct: 184 -VTESASLKQGKEIHGYILRHGIALDVFLKSALIDIYFKCRDVGMACKIFKQSTN-VDIV 241
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
A++ GY+ NGL +A + + + + + AC+ ++
Sbjct: 242 VCTAIISGYVLNGLNNDALEIFRWLLEEKMSPNAVTLASVLPACAGLA 289
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 69/280 (24%), Positives = 133/280 (47%), Gaps = 7/280 (2%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R I + + L+ ++ C + A ++F + D +I GYV + +
Sbjct: 202 RHGIALDVFLKSALIDIYFKCRDVGMACKIFKQSTNVDIVVCTAIISGYVLNGLNNDALE 261
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
+F +++ K + A + VL AC + LGK++H + K G + ++
Sbjct: 262 IFRWLLEEK-----MSPNAVTLASVLPACAGLATLNLGKELHANILKHGLDERRHVGSAI 316
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
++ Y K L+ A +F ++ + V W A I N + G + + F++MGRE + +
Sbjct: 317 MDMYAKCGRLDLAYQIFRRMPEKDAVCWNAIITNCSQNGKPQEAIDLFRQMGREGLSYDC 376
Query: 219 YTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE 278
+ S+ L AC + + G+ +H+ ++K +S+ + + L+DMYGKC L A VF+
Sbjct: 377 VSISAALSACANLPALHH-GKAIHSFMIKGAFDSEVFAESALIDMYGKCGNLSVARCVFD 435
Query: 279 LIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
++ +K + SWN+++ Y +G + + M GIQ
Sbjct: 436 MMREKNEV-SWNSIIAAYGSHGHLEVSLALFHKMLEDGIQ 474
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/240 (26%), Positives = 99/240 (41%), Gaps = 7/240 (2%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+ CG+LD A Q+F MP +D W +I QE I LF R+ G L
Sbjct: 319 MYAKCGRLDLAYQIFRRMPEKDAVCWNAIITNCSQNGKPQEAIDLF-----RQMGREGLS 373
Query: 115 FPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFV 174
+ I L AC + GK +H + K + +LI+ YGK L A V
Sbjct: 374 YDCVSISAALSACANLPALHHGKAIHSFMIKGAFDSEVFAESALIDMYGKCGNLSVARCV 433
Query: 175 FSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDD 234
F ++ N V W + I GH F +M + I+ + TF ++L ACG
Sbjct: 434 FDMMREKNEVSWNSIIAAYGSHGHLEVSLALFHKMLEDGIQPDHVTFLTILSACGHAGQV 493
Query: 235 GNCGRQMHANIVKIGLESD-EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
+ + G+ + E+ C +VD++G+ L +A + + + W +L
Sbjct: 494 DKGIQYFRCMTEEYGIPARMEHYAC-IVDLFGRAGRLNEAFETIKNMPFSPDDGVWGTLL 552
>gi|297824049|ref|XP_002879907.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325746|gb|EFH56166.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 565
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 144/310 (46%), Gaps = 15/310 (4%)
Query: 25 DSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMI 84
D A L +RK+ + N L+ +V G L +AR++FDEMP R +W MI
Sbjct: 9 DLPSAVALYERMRKK-----NFMSSNILINGYVRAGDLVSARKVFDEMPDRKLTTWNAMI 63
Query: 85 VGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLL 143
G + +E ++LF EM H L P + + V ++ +G+Q+HG
Sbjct: 64 AGLIQFEYNEEGLSLFREM------HGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYA 117
Query: 144 FKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVF 203
K G ++ + SL + Y + L+D + V + N V W I+ N + G V
Sbjct: 118 IKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVL 177
Query: 204 NDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDM 263
+K M + N TF +VL +C + G G+Q+HA +KIG S V L+ M
Sbjct: 178 YLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQ-GQQIHAEAIKIGASSVVAVVSSLISM 236
Query: 264 YGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATK-FLYLMKASGIQIQES 322
Y KC L DA + F D+ + W++M+ Y +G EA K F + + + +++ E
Sbjct: 237 YSKCGCLGDAAKAFSEREDEDEVM-WSSMISAYGFHGQGDEAIKLFNSMAEQTEMEVNEV 295
Query: 323 LINDLRIACS 332
+L ACS
Sbjct: 296 AFLNLLYACS 305
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 88/194 (45%), Gaps = 4/194 (2%)
Query: 143 LFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQV 202
L++ +N + LIN Y + L A VF ++ W A I + + +
Sbjct: 16 LYERMRKKNFMSSNILINGYVRAGDLVSARKVFDEMPDRKLTTWNAMIAGLIQFEYNEEG 75
Query: 203 FNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVD 262
+ F+EM + YT SV G+ + G+Q+H +K GLE D V L
Sbjct: 76 LSLFREMHGLGFSPDEYTLGSVFSGSAGLRSV-SIGQQIHGYAIKYGLELDLVVNSSLAH 134
Query: 263 MYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLY-LMKASGIQIQE 321
MY + L+D E V + +N+ +WN +++G +NG E +LY +MK SG + +
Sbjct: 135 MYMRNGKLQDGEIVIRSM-PVRNLVAWNTLIMGNAQNGC-PETVLYLYKMMKISGCRPNK 192
Query: 322 SLINDLRIACSSIS 335
+ +CS ++
Sbjct: 193 ITFVTVLSSCSDLA 206
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 112/252 (44%), Gaps = 12/252 (4%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L+ + L M++ G+L + MP+R+ +W +I+G + + L+ +MMK
Sbjct: 126 LVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLY-KMMK 184
Query: 106 RKKGHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
+ P I V VL +C G+Q+H K+G+S +++ SLI+ Y K
Sbjct: 185 -----ISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSK 239
Query: 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRE-RIKKNSYTFSS 223
CL DA FS+ + + V+W++ I G + F M + ++ N F +
Sbjct: 240 CGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIKLFNSMAEQTEMEVNEVAFLN 299
Query: 224 VLKACG--GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIV 281
+L AC G+ D G M + K G + +VD+ G+ L AE + + +
Sbjct: 300 LLYACSHSGLKDKGLELFDMM--VEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIKSMP 357
Query: 282 DKKNIASWNAML 293
K + W +L
Sbjct: 358 IKPDPVIWKTLL 369
>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 1058
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 94/322 (29%), Positives = 144/322 (44%), Gaps = 39/322 (12%)
Query: 42 IKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFA 101
+ P ++ N ++ + G L A+ LF +MP+++ SWA MI G+V + +E + L
Sbjct: 485 LNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAMIAGFVQNEESREALELLI 544
Query: 102 EMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINF 161
E+ + V L AC ++E+G+ +H L K G N + LI+
Sbjct: 545 ELHRSGS-----VPSDSSFTSALSACANIGDVEIGRVIHSLAIKTGCQFNSYVMNGLISM 599
Query: 162 YGK----------FRC---------------------LEDADFVFSQLKRHNTVVWTAKI 190
Y K FR L+DA VF ++ + + V WTA I
Sbjct: 600 YAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLSENYMLDDARVVFEKMPKRDVVSWTAII 659
Query: 191 VNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGL 250
+ GH + F +M IK N T +S+L ACG + G Q HA I K+G
Sbjct: 660 SAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSLLSACGNLGAI-KLGEQFHALIFKLGF 718
Query: 251 ESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLY 310
++ +V L+ MY KC D VFE + + ++ +WNA+LVG +NGL EA K
Sbjct: 719 DTFLFVGNSLITMYFKCG-YEDGFCVFEEM-PEHDLITWNAVLVGCAQNGLGKEAIKIFE 776
Query: 311 LMKASGIQIQESLINDLRIACS 332
M+ GI + + ACS
Sbjct: 777 QMEVEGILPDQMSFLGVLCACS 798
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 81/270 (30%), Positives = 130/270 (48%), Gaps = 15/270 (5%)
Query: 28 GAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGY 87
G E +H+ + + +K T+ + N L+ LD AR +F++MP RD SW +I Y
Sbjct: 604 GNVEDGSHVFRTIRVKDTVSW-NSLISGLSENYMLDDARVVFEKMPKRDVVSWTAIISAY 662
Query: 88 VDVADYQECITLFAEMMKRK-KGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKL 146
V + + LF +M+ R K + L V +L AC ++LG+Q H L+FKL
Sbjct: 663 VQAGHGEVALDLFLDMLARGIKPNQLTV------TSLLSACGNLGAIKLGEQFHALIFKL 716
Query: 147 GSSRNISLTGSLINFYGKFRC-LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFND 205
G + + SLI Y F+C ED VF ++ H+ + W A +V + G +
Sbjct: 717 GFDTFLFVGNSLITMY--FKCGYEDGFCVFEEMPEHDLITWNAVLVGCAQNGLGKEAIKI 774
Query: 206 FKEMGRERIKKNSYTFSSVLKAC--GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDM 263
F++M E I + +F VL AC G+ D+G ++ K G+ Y +VD+
Sbjct: 775 FEQMEVEGILPDQMSFLGVLCACSHAGLVDEGWA--HFNSMTQKYGIMPLVYHYTCMVDL 832
Query: 264 YGKCRLLRDAERVFELIVDKKNIASWNAML 293
G+ L +AE + E + K + W A+L
Sbjct: 833 LGRAGYLSEAEALIENMPVKPDSVIWEALL 862
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 71/311 (22%), Positives = 123/311 (39%), Gaps = 46/311 (14%)
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI 119
G LD A F+ MP R+ SW MI + + I L+ + ++
Sbjct: 410 GSLDLAMHFFETMPERNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQ------------- 456
Query: 120 IVCVLKACVCTMNMELGK-QVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL 178
K + T ++G+ Q L+F + N+ ++I Y + L++A +F ++
Sbjct: 457 -TVATKTAMMTAYAQVGRIQKARLIFDEILNPNVVAWNAIIAGYTQNGMLKEAKDLFQKM 515
Query: 179 KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCG 238
N+ W A I + + E+ R + +F+S L AC + D G
Sbjct: 516 PVKNSASWAAMIAGFVQNEESREALELLIELHRSGSVPSDSSFTSALSACANIGDV-EIG 574
Query: 239 RQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELI------------------ 280
R +H+ +K G + + YV GL+ MY KC + D VF I
Sbjct: 575 RVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLSEN 634
Query: 281 ------------VDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLR 328
+ K+++ SW A++ Y++ G A M A GI+ + + L
Sbjct: 635 YMLDDARVVFEKMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSLL 694
Query: 329 IACSSISASKI 339
AC ++ A K+
Sbjct: 695 SACGNLGAIKL 705
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/291 (24%), Positives = 133/291 (45%), Gaps = 17/291 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N ++ + C ++ AR+LFD+MP R+ SW VMI GYV ++DY E +F +M +
Sbjct: 299 NSVVTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTVAR 358
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+F V VL A ++EL + + K G ++ + +++N Y + L+
Sbjct: 359 PDQSIF-----VVVLSAITGLDDLELIGSLRPIAIKTGYEGDVVVGSAILNAYTRNGSLD 413
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A F + N WT I + G ++ + + + T ++++ A
Sbjct: 414 LAMHFFETMPERNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTVA----TKTAMMTAYA 469
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQC-GLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
V GR A ++ + + V ++ Y + +L++A+ +F+ + KN AS
Sbjct: 470 QV------GRIQKARLIFDEILNPNVVAWNAIIAGYTQNGMLKEAKDLFQKM-PVKNSAS 522
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKI 339
W AM+ G+++N EA + L + SG +S AC++I +I
Sbjct: 523 WAAMIAGFVQNEESREALELLIELHRSGSVPSDSSFTSALSACANIGDVEI 573
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/284 (21%), Positives = 119/284 (41%), Gaps = 17/284 (5%)
Query: 19 ECTFQKDSAGAFELLNHIRKRVN--IKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRD 76
+C + G + R+ N I+ ++ N ++ + G++D AR LFD ++
Sbjct: 173 QCNTRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFDAFVGKN 232
Query: 77 FNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELG 136
+W +++ GY +E +F M +R +W ++ V +++
Sbjct: 233 IRTWTILLTGYAKEGRIEEAREVFESMTERN-------VVSW--NAMISGYVQNGDLKNA 283
Query: 137 KQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCRE 196
++ LF +N++ S++ Y + +A +F Q+ N+V W I
Sbjct: 284 RK----LFDEMPEKNVASWNSVVTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHI 339
Query: 197 GHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYV 256
+ + ++ F +M R + + F VL A G+DD G + +K G E D V
Sbjct: 340 SDYWEAWDVFVKMCRTVARPDQSIFVVVLSAITGLDDLELIG-SLRPIAIKTGYEGDVVV 398
Query: 257 QCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
+++ Y + L A FE + ++N SW M+ + + G
Sbjct: 399 GSAILNAYTRNGSLDLAMHFFETM-PERNEYSWTTMIAAFAQCG 441
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 260 LVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQI 319
L+ Y K + +A VFE + ++ N+ SWNAM+ GY++NG A K M +
Sbjct: 239 LLTGYAKEGRIEEAREVFESMTER-NVVSWNAMISGYVQNGDLKNARKLFDEMPEKNVAS 297
Query: 320 QESLIN 325
S++
Sbjct: 298 WNSVVT 303
>gi|242058523|ref|XP_002458407.1| hypothetical protein SORBIDRAFT_03g032890 [Sorghum bicolor]
gi|241930382|gb|EES03527.1| hypothetical protein SORBIDRAFT_03g032890 [Sorghum bicolor]
Length = 695
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 80/284 (28%), Positives = 129/284 (45%), Gaps = 8/284 (2%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
+N L+ + G ++ AR+LFD MP R SW MI Y +++E +TLF +M++
Sbjct: 243 MNCLITGYSKSGDVEEARRLFDSMPRRTSASWNSMIACYAHGGEFREALTLFDQMLREGA 302
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
A I V C T +++ G++ + + +N+ + +L+ Y K R +
Sbjct: 303 SPN-----AITITTVFSICAKTGDLDTGRRARAWI-REEDLQNVIVHTALMEMYVKCRAI 356
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
++A F ++ R + V W+ I + G H+ F+ M K N T VL AC
Sbjct: 357 DEARHEFDRMPRRDVVAWSTMIAGYSQNGRPHESLELFERMKATNCKPNEVTLVGVLSAC 416
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
+ D G Q+ I L Y+ L+DMY KC + A VF + ++K + +
Sbjct: 417 AQLGSD-ELGEQIGNYIESQTLPLTSYLGSALIDMYTKCGHVARARSVFNRM-EQKVVVT 474
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
WN+M+ G NG +A M GIQ E L AC+
Sbjct: 475 WNSMIRGLALNGFAEDAIALYRKMVGDGIQPNEVTFVALLTACT 518
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/307 (23%), Positives = 129/307 (42%), Gaps = 39/307 (12%)
Query: 64 TARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCV 123
AR LFD +P + G ++ +QE I + + + +R P+ I V
Sbjct: 126 AARHLFDVVPRPTAALCCAFLSGLSKLSLHQEFIEVVSSLHRRGGA-----IPSGCIPLV 180
Query: 124 LKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK------------------- 164
LK+C + G Q H G ++ + +L++FY K
Sbjct: 181 LKSCAQSAASCQGSQTHCHALVRGMLGDVFVQTALVDFYAKNGDMDSALMAFKEMPVKDP 240
Query: 165 --FRCL----------EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRE 212
CL E+A +F + R + W + I G F + F +M RE
Sbjct: 241 IPMNCLITGYSKSGDVEEARRLFDSMPRRTSASWNSMIACYAHGGEFREALTLFDQMLRE 300
Query: 213 RIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRD 272
N+ T ++V C D + GR+ A I + L+ + V L++MY KCR + +
Sbjct: 301 GASPNAITITTVFSICAKTGD-LDTGRRARAWIREEDLQ-NVIVHTALMEMYVKCRAIDE 358
Query: 273 AERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
A F+ + ++++ +W+ M+ GY +NG E+ + MKA+ + E + + AC+
Sbjct: 359 ARHEFDRM-PRRDVVAWSTMIAGYSQNGRPHESLELFERMKATNCKPNEVTLVGVLSACA 417
Query: 333 SISASKI 339
+ + ++
Sbjct: 418 QLGSDEL 424
>gi|125586937|gb|EAZ27601.1| hypothetical protein OsJ_11548 [Oryza sativa Japonica Group]
Length = 651
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 89/291 (30%), Positives = 145/291 (49%), Gaps = 20/291 (6%)
Query: 45 TLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMM 104
+ + +L + SC + D AR++FD MP R+ +W +I GY +E I LF + M
Sbjct: 108 STILATAVLSFYASCREPDLARKVFDGMPRRNAVTWNALIKGYAQAGRREEAILLFRD-M 166
Query: 105 KRKKGHML---LVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINF 161
KR+ H+ FPA ++ + + +ELG +H + K G R+ + SL++
Sbjct: 167 KREGSHVAPDRYTFPA-LLSGIGREGGSGRTLELGGALHAHVIKAGLERDPFVGASLVSL 225
Query: 162 YGKFRCLEDADFVFSQLKRHNTVVWTAKIVN--NC--REGHFHQVFNDFKEMGRERIKKN 217
Y R LEDA F Q+ + +VW++ I NC EG FN M + IK
Sbjct: 226 YAARRTLEDAKVAFDQVGSSDPIVWSSMISAYVNCEEEEGALLIFFN----MLCQDIKPT 281
Query: 218 SYTFSSVLKACG--GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAER 275
+ +S+V CG G+ + G+Q+HA+ +K E D + L+ MY C + DA++
Sbjct: 282 QFVYSTVFSVCGRMGILE---MGKQVHAHSLKSNTEKDAAMFNALLTMYSDCGCINDAQK 338
Query: 276 VFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQE-SLIN 325
VF D N+ S+N+M+ ++G EA + MK +G+ E +L+N
Sbjct: 339 VFS-SNDCVNVISYNSMISALGQHGYPKEALEHFRQMKFAGLMPDEVTLLN 388
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 85/177 (48%), Gaps = 15/177 (8%)
Query: 132 NMELGKQVHGLLFK---LGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTA 188
++ LG Q+H LG + L ++++FY R + A VF + R N V W A
Sbjct: 86 SLGLGAQLHAQAVVRGFLGGDDSTILATAVLSFYASCREPDLARKVFDGMPRRNAVTWNA 145
Query: 189 KIVNNCREGHFHQVFNDFKEMGRE--RIKKNSYTFSSVLKACGGVDDDGNCGR------Q 240
I + G + F++M RE + + YTF ++L G+ +G GR
Sbjct: 146 LIKGYAQAGRREEAILLFRDMKREGSHVAPDRYTFPALLS---GIGREGGSGRTLELGGA 202
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYI 297
+HA+++K GLE D +V LV +Y R L DA+ F+ + I W++M+ Y+
Sbjct: 203 LHAHVIKAGLERDPFVGASLVSLYAARRTLEDAKVAFDQVGSSDPIV-WSSMISAYV 258
>gi|41469322|gb|AAS07178.1| putative pentatricopeptide repeat containing protein [Oryza sativa
Japonica Group]
gi|108709518|gb|ABF97313.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 654
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 89/291 (30%), Positives = 145/291 (49%), Gaps = 20/291 (6%)
Query: 45 TLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMM 104
+ + +L + SC + D AR++FD MP R+ +W +I GY +E I LF + M
Sbjct: 108 STILATAVLSFYASCREPDLARKVFDGMPRRNAVTWNALIKGYAQAGRREEAILLFRD-M 166
Query: 105 KRKKGHML---LVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINF 161
KR+ H+ FPA ++ + + +ELG +H + K G R+ + SL++
Sbjct: 167 KREGSHVAPDRYTFPA-LLSGIGREGGSGRTLELGGALHAHVIKAGLERDPFVGASLVSL 225
Query: 162 YGKFRCLEDADFVFSQLKRHNTVVWTAKIVN--NC--REGHFHQVFNDFKEMGRERIKKN 217
Y R LEDA F Q+ + +VW++ I NC EG FN M + IK
Sbjct: 226 YAARRTLEDAKVAFDQVGSSDPIVWSSMISAYVNCEEEEGALLIFFN----MLCQDIKPT 281
Query: 218 SYTFSSVLKACG--GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAER 275
+ +S+V CG G+ + G+Q+HA+ +K E D + L+ MY C + DA++
Sbjct: 282 QFVYSTVFSVCGRMGILE---MGKQVHAHSLKSNTEKDAAMFNALLTMYSDCGCINDAQK 338
Query: 276 VFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQE-SLIN 325
VF D N+ S+N+M+ ++G EA + MK +G+ E +L+N
Sbjct: 339 VFS-SNDCVNVISYNSMISALGQHGYPKEALEHFRQMKFAGLMPDEVTLLN 388
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 85/177 (48%), Gaps = 15/177 (8%)
Query: 132 NMELGKQVHGLLFK---LGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTA 188
++ LG Q+H LG + L ++++FY R + A VF + R N V W A
Sbjct: 86 SLGLGAQLHAQAVVRGFLGGDDSTILATAVLSFYASCREPDLARKVFDGMPRRNAVTWNA 145
Query: 189 KIVNNCREGHFHQVFNDFKEMGRE--RIKKNSYTFSSVLKACGGVDDDGNCGR------Q 240
I + G + F++M RE + + YTF ++L G+ +G GR
Sbjct: 146 LIKGYAQAGRREEAILLFRDMKREGSHVAPDRYTFPALLS---GIGREGGSGRTLELGGA 202
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYI 297
+HA+++K GLE D +V LV +Y R L DA+ F+ + I W++M+ Y+
Sbjct: 203 LHAHVIKAGLERDPFVGASLVSLYAARRTLEDAKVAFDQVGSSDPIV-WSSMISAYV 258
>gi|15221400|ref|NP_172104.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174948|sp|Q9LND4.1|PPR14_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g06140, mitochondrial; Flags: Precursor
gi|8810476|gb|AAF80137.1|AC024174_19 Contains similarity to a hypothetical protein F24K9.13 gi|6006885
from Arabidopsis thaliana gb|AC008153 and contains
multiple PPR PF|01535 repeats [Arabidopsis thaliana]
gi|332189825|gb|AEE27946.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 558
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 81/282 (28%), Positives = 147/282 (52%), Gaps = 8/282 (2%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ G +++A+++FDE+P+R+ W V++ GY+ + E LF M R G
Sbjct: 150 LVEMYAQLGTMESAQKVFDEIPVRNSVLWGVLMKGYLKYSKDPEVFRLFCLM--RDTG-- 205
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLG-SSRNISLTGSLINFYGKFRCLED 170
L A ++C++KAC ++GK VHG+ + ++ L S+I+ Y K R L++
Sbjct: 206 -LALDALTLICLVKACGNVFAGKVGKCVHGVSIRRSFIDQSDYLQASIIDMYVKCRLLDN 264
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
A +F N V+WT I + + F+ F++M RE I N T +++L +C
Sbjct: 265 ARKLFETSVDRNVVMWTTLISGFAKCERAVEAFDLFRQMLRESILPNQCTLAAILVSCSS 324
Query: 231 VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWN 290
+ + G+ +H +++ G+E D +DMY +C ++ A VF+++ ++N+ SW+
Sbjct: 325 LGSLRH-GKSVHGYMIRNGIEMDAVNFTSFIDMYARCGNIQMARTVFDMM-PERNVISWS 382
Query: 291 AMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+M+ + NGL+ EA + MK+ + L ACS
Sbjct: 383 SMINAFGINGLFEEALDCFHKMKSQNVVPNSVTFVSLLSACS 424
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/286 (26%), Positives = 139/286 (48%), Gaps = 12/286 (4%)
Query: 56 HVSCGQLDTARQLFDEMPL--RDFNSWAVMIVGYVDVAD--YQECITLFAEMMKRKKGHM 111
++ +LD A F+ +P R+ +SW ++ GY Y + + L+ M + G
Sbjct: 49 YIQSNRLDFATSSFNRIPCWKRNRHSWNTILSGYSKSKTCCYSDVLLLYNRMRRHCDG-- 106
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
++ +V +KACV +E G +HGL K G ++ + SL+ Y + +E A
Sbjct: 107 ---VDSFNLVFAIKACVGLGLLENGILIHGLAMKNGLDKDDYVAPSLVEMYAQLGTMESA 163
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
VF ++ N+V+W + + +VF F M + ++ T ++KACG V
Sbjct: 164 QKVFDEIPVRNSVLWGVLMKGYLKYSKDPEVFRLFCLMRDTGLALDALTLICLVKACGNV 223
Query: 232 DDDGNCGRQMHA-NIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWN 290
G G+ +H +I + ++ +Y+Q ++DMY KCRLL +A ++FE VD +N+ W
Sbjct: 224 -FAGKVGKCVHGVSIRRSFIDQSDYLQASIIDMYVKCRLLDNARKLFETSVD-RNVVMWT 281
Query: 291 AMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
++ G+ + VEA M I + + + ++CSS+ +
Sbjct: 282 TLISGFAKCERAVEAFDLFRQMLRESILPNQCTLAAILVSCSSLGS 327
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 106/240 (44%), Gaps = 7/240 (2%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+V C LD AR+LF+ R+ W +I G+ E LF +M++ +
Sbjct: 255 MYVKCRLLDNARKLFETSVDRNVVMWTTLISGFAKCERAVEAFDLFRQMLRES------I 308
Query: 115 FPAW-IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADF 173
P + +L +C ++ GK VHG + + G + S I+ Y + ++ A
Sbjct: 309 LPNQCTLAAILVSCSSLGSLRHGKSVHGYMIRNGIEMDAVNFTSFIDMYARCGNIQMART 368
Query: 174 VFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDD 233
VF + N + W++ I G F + + F +M + + NS TF S+L AC +
Sbjct: 369 VFDMMPERNVISWSSMINAFGINGLFEEALDCFHKMKSQNVVPNSVTFVSLLSACSHSGN 428
Query: 234 DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
+Q + G+ +E +VD+ G+ + +A+ + + K ++W A+L
Sbjct: 429 VKEGWKQFESMTRDYGVVPEEEHYACMVDLLGRAGEIGEAKSFIDNMPVKPMASAWGALL 488
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 93/207 (44%), Gaps = 6/207 (2%)
Query: 137 KQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK--RHNTVVWTAKIVNNC 194
+QVH + G + L SL N Y + L+ A F+++ + N W +
Sbjct: 24 QQVHAKVIIHGFEDEVVLGSSLTNAYIQSNRLDFATSSFNRIPCWKRNRHSWNTILSGYS 83
Query: 195 REGH--FHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLES 252
+ + V + M R +S+ +KAC G+ N G +H +K GL+
Sbjct: 84 KSKTCCYSDVLLLYNRMRRHCDGVDSFNLVFAIKACVGLGLLEN-GILIHGLAMKNGLDK 142
Query: 253 DEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLM 312
D+YV LV+MY + + A++VF+ I +N W ++ GY++ E + LM
Sbjct: 143 DDYVAPSLVEMYAQLGTMESAQKVFDEI-PVRNSVLWGVLMKGYLKYSKDPEVFRLFCLM 201
Query: 313 KASGIQIQESLINDLRIACSSISASKI 339
+ +G+ + + L AC ++ A K+
Sbjct: 202 RDTGLALDALTLICLVKACGNVFAGKV 228
>gi|302756227|ref|XP_002961537.1| hypothetical protein SELMODRAFT_626 [Selaginella moellendorffii]
gi|300170196|gb|EFJ36797.1| hypothetical protein SELMODRAFT_626 [Selaginella moellendorffii]
Length = 675
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 94/348 (27%), Positives = 154/348 (44%), Gaps = 25/348 (7%)
Query: 10 TDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLF 69
D Y LI++CT + + HI K + + L LN L+ M G + A ++F
Sbjct: 2 ADTYAVLIRQCTLARAVPEGRRVHAHISKH-GCRDSFL-LNLLVQMFGRFGCVADASRVF 59
Query: 70 DEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI------IVCV 123
D +P R+ SW +M+ + Q+ F +M + L+ I V V
Sbjct: 60 DSIPARNCYSWNIMVAAFAQNGHLQQARITFDQMPPSDRSLFALMDLDGIRADTITFVSV 119
Query: 124 LKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNT 183
+ AC ++LG VH + G+ + ++ +L++ YGK R LE + +F +++ N
Sbjct: 120 IDACSSLRRIDLGIAVHVEARESGTEMHYAVATALVSMYGKCRRLERSKEMFDRMEERNM 179
Query: 184 VVWTAKIVNNCREGHFH-QVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
V WTA I + F M + I+ + F S L+ACG + D GR++H
Sbjct: 180 VTWTAMITAYAQNAQLDWAALEVFDAMEGDGIRPDKCVFVSALEACGALGDLA-VGRKIH 238
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG-- 300
I +E + V GL+ MYGKC + +A VF+ ++++ SWN M+ Y +NG
Sbjct: 239 RRIATARMEENLIVANGLIAMYGKCGGVEEARAVFD-STPQRSLLSWNLMIAAYAQNGHP 297
Query: 301 ------------LYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
EA +M GIQ + ACSS+++
Sbjct: 298 RHCSIGCPRGIWWAEEALAGFRIMDLDGIQPNRVTFLSILDACSSLAS 345
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 84/350 (24%), Positives = 148/350 (42%), Gaps = 48/350 (13%)
Query: 28 GAFELLNHIRKRV---NIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMI 84
G + I +R+ ++ L+ N L+ M+ CG ++ AR +FD P R SW +MI
Sbjct: 229 GDLAVGRKIHRRIATARMEENLIVANGLIAMYGKCGGVEEARAVFDSTPQRSLLSWNLMI 288
Query: 85 VGYVDVADYQECIT------LFAEMMKRKKGHMLL----VFPAWI-IVCVLKACVCTMNM 133
Y + C +AE + G ++ + P + + +L AC ++
Sbjct: 289 AAYAQNGHPRHCSIGCPRGIWWAE--EALAGFRIMDLDGIQPNRVTFLSILDACSSLASI 346
Query: 134 ELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDAD--------------------- 172
E G+ VH + + ++ + SL+ +G+ ++AD
Sbjct: 347 EFGRVVHACIVDSCFAGDVHVGTSLVTMFGRCEHAQEADAAFHAIVAKNILAWTAILSAN 406
Query: 173 ----------FVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFS 222
+F Q+ N + WT I GH + + FK M + N T+
Sbjct: 407 ALSGHLDAARMLFDQMPERNVISWTGMISAYAYSGHRREAHDLFKAMDLLGQRPNKITYL 466
Query: 223 SVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282
L+AC G R +HA ++ G SD V GL++++ KC L AERVF+ + +
Sbjct: 467 KALEACAGGITAAE-ARTIHAKAIESGYSSDTQVAVGLLNLFEKCGSLAIAERVFDDLGE 525
Query: 283 KKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+K + +W+ M+ Y ++G + + M SG+ E + +L ACS
Sbjct: 526 RKTVVAWSIMISAYAQSGRPWRSLELFTEMVQSGVMPTEITVVNLLSACS 575
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 73/274 (26%), Positives = 122/274 (44%), Gaps = 23/274 (8%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQ-ECITLFAEMMKRKKGH 110
L+ M+ C +L+ ++++FD M R+ +W MI Y A + +F M
Sbjct: 154 LVSMYGKCRRLERSKEMFDRMEERNMVTWTAMITAYAQNAQLDWAALEVFDAMEGDGIRP 213
Query: 111 MLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
VF V L+AC ++ +G+++H + N+ + LI YGK +E+
Sbjct: 214 DKCVF-----VSALEACGALGDLAVGRKIHRRIATARMEENLIVANGLIAMYGKCGGVEE 268
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGH--------------FHQVFNDFKEMGRERIKK 216
A VF + + + W I + GH + F+ M + I+
Sbjct: 269 ARAVFDSTPQRSLLSWNLMIAAYAQNGHPRHCSIGCPRGIWWAEEALAGFRIMDLDGIQP 328
Query: 217 NSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERV 276
N TF S+L AC + GR +HA IV D +V LV M+G+C ++A+
Sbjct: 329 NRVTFLSILDACSSLASI-EFGRVVHACIVDSCFAGDVHVGTSLVTMFGRCEHAQEADAA 387
Query: 277 FELIVDKKNIASWNAMLVGYIRNGLYVEATKFLY 310
F IV KNI +W A+L +G +++A + L+
Sbjct: 388 FHAIV-AKNILAWTAILSANALSG-HLDAARMLF 419
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 62/259 (23%), Positives = 105/259 (40%), Gaps = 24/259 (9%)
Query: 8 ITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQ 67
+ T + T + C +++ AF + + +L +L + G LD AR
Sbjct: 367 VGTSLVT-MFGRCEHAQEADAAFHAI--------VAKNILAWTAILSANALSGHLDAARM 417
Query: 68 LFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEM-MKRKKGHMLLVFPAWIIVCVLKA 126
LFD+MP R+ SW MI Y +E LF M + ++ + + A L+A
Sbjct: 418 LFDQMPERNVISWTGMISAYAYSGHRREAHDLFKAMDLLGQRPNKITYLKA------LEA 471
Query: 127 CVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVV- 185
C + + +H + G S + + L+N + K L A+ VF L TVV
Sbjct: 472 CAGGITAAEARTIHAKAIESGYSSDTQVAVGLLNLFEKCGSLAIAERVFDDLGERKTVVA 531
Query: 186 WTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANI 245
W+ I + G + F EM + + T ++L AC + G H+ +
Sbjct: 532 WSIMISAYAQSGRPWRSLELFTEMVQSGVMPTEITVVNLLSAC------SHGGFLYHSWL 585
Query: 246 VKIGLESDEYVQCGLVDMY 264
+ + D Y C ++D Y
Sbjct: 586 FFVSMVGD-YGLCPILDNY 603
>gi|225464414|ref|XP_002269452.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g04780-like [Vitis vinifera]
Length = 594
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 86/296 (29%), Positives = 146/296 (49%), Gaps = 7/296 (2%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
RV ++ + N L+ M+ CG +++AR+LFDEMP+R SW M+ + D ++ +
Sbjct: 48 RVGLRADTITSNMLMNMYSKCGLVESARKLFDEMPVRSLVSWNTMVGSHTQNGDCEKALV 107
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
LF +M +K+G F +VC A C KQ+HG K N+ + +L
Sbjct: 108 LFMQM--QKEGTSCSEFTVSSVVCACAAKCCVFEC---KQLHGFALKTALDSNVFVGTAL 162
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
++ Y K ++DA+ VF + + V W++ + + + + F ++ N
Sbjct: 163 LDVYAKCGLVKDANLVFECMPERSDVTWSSMVAGYVQNELYEEALVLFHRAQAMGLEHNQ 222
Query: 219 YTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE 278
+T SS L AC G+Q+ A K G+ S+ +V L+DMY KC ++ +A VF
Sbjct: 223 FTISSALSACAARAALIE-GKQVQAVSCKTGIGSNIFVISSLIDMYAKCGIIEEAYTVFS 281
Query: 279 LIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
V++KN+ WNA+L G+ R+ +EA + M+ GI + + ACS +
Sbjct: 282 -SVEEKNVVLWNAILSGFSRHVRSLEAMIYFEKMQQMGICPNDITYISVLSACSHL 336
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 97/183 (53%), Gaps = 2/183 (1%)
Query: 136 GKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCR 195
G H + ++G + + L+N Y K +E A +F ++ + V W + ++ +
Sbjct: 39 GMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMPVRSLVSWNTMVGSHTQ 98
Query: 196 EGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEY 255
G + F +M +E + +T SSV+ AC C +Q+H +K L+S+ +
Sbjct: 99 NGDCEKALVLFMQMQKEGTSCSEFTVSSVVCACAAKCCVFEC-KQLHGFALKTALDSNVF 157
Query: 256 VQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKAS 315
V L+D+Y KC L++DA VFE + ++ ++ +W++M+ GY++N LY EA + +A
Sbjct: 158 VGTALLDVYAKCGLVKDANLVFECMPERSDV-TWSSMVAGYVQNELYEEALVLFHRAQAM 216
Query: 316 GIQ 318
G++
Sbjct: 217 GLE 219
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 76/292 (26%), Positives = 128/292 (43%), Gaps = 19/292 (6%)
Query: 8 ITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQ 67
+++ + C K C F+ F L + + + LL ++ CG + A
Sbjct: 124 VSSVVCACAAKCCVFECKQLHGFAL------KTALDSNVFVGTALLDVYAKCGLVKDANL 177
Query: 68 LFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKAC 127
+F+ MP R +W+ M+ GYV Y+E + LF + M L + I L AC
Sbjct: 178 VFECMPERSDVTWSSMVAGYVQNELYEEALVLF-----HRAQAMGLEHNQFTISSALSAC 232
Query: 128 VCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWT 187
+ GKQV + K G NI + SLI+ Y K +E+A VFS ++ N V+W
Sbjct: 233 AARAALIEGKQVQAVSCKTGIGSNIFVISSLIDMYAKCGIIEEAYTVFSSVEEKNVVLWN 292
Query: 188 AKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC---GGVDDDGNCGRQMHAN 244
A + R + F++M + I N T+ SVL AC G V+ GR+
Sbjct: 293 AILSGFSRHVRSLEAMIYFEKMQQMGICPNDITYISVLSACSHLGLVEK----GRKYFDL 348
Query: 245 IVKIGLESDEYVQCG-LVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
++++ S + +VD+ G+ LL +A+ + + + W ++L
Sbjct: 349 MIRVHNVSPNVLHYSCMVDILGRAGLLHEAKDFIDRMPFDATASMWGSLLAS 400
>gi|255543413|ref|XP_002512769.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223547780|gb|EEF49272.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 684
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 79/282 (28%), Positives = 140/282 (49%), Gaps = 11/282 (3%)
Query: 51 RLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGH 110
+L+ ++ G L A LFD++P D +W ++I G+ ++ I +++ ++ R
Sbjct: 16 KLIKTCLNSGDLKRALYLFDKIPEPDLRTWTILISGHTQHGFPKKAIDIYSTLLSRN--- 72
Query: 111 MLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
V P ++++ V KAC + ++ + K++H + G ++++ L +LI+ +GK + +
Sbjct: 73 ---VRPDKFVLLSVAKACAASGDLVVAKKIHDDAIQFGFNKDLVLGNALIDMFGKCKFVN 129
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A VF + + V WT+ G Q F+EMG I+ NS T SS+L AC
Sbjct: 130 GARCVFDDMVVKDVVSWTSMTYCYVNCGMCRQGILLFREMGLNGIRANSLTVSSILPACA 189
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
D GR++H I++ +E + YV LV+MY L+ A VF+ + ++I SW
Sbjct: 190 ---DYIKLGREVHGFILRNEMEGNVYVSSALVNMYASSLGLKQARLVFDSMY-HRDIVSW 245
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
N ML Y N Y + M+ GI++ ++ N C
Sbjct: 246 NVMLTAYFLNKEYERGLGLFHQMRKEGIKLNQASWNAAISGC 287
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 76/308 (24%), Positives = 130/308 (42%), Gaps = 44/308 (14%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L+ N L+ M C ++ AR +FD+M ++D SW M YV+ ++ I LF EM
Sbjct: 112 LVLGNALIDMFGKCKFVNGARCVFDDMVVKDVVSWTSMTYCYVNCGMCRQGILLFREM-- 169
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
G + + + +L AC + +LG++VHG + + N+ ++ +L+N Y
Sbjct: 170 ---GLNGIRANSLTVSSILPACADYI--KLGREVHGFILRNEMEGNVYVSSALVNMYASS 224
Query: 166 RCLEDADFVFSQLKRHNTVVW----TAKIVNNCRE---GHFHQVFND------------- 205
L+ A VF + + V W TA +N E G FHQ+ +
Sbjct: 225 LGLKQARLVFDSMYHRDIVSWNVMLTAYFLNKEYERGLGLFHQMRKEGIKLNQASWNAAI 284
Query: 206 ---------------FKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGL 250
+M IK N T S L C + + G+++H + +
Sbjct: 285 SGCMQNGQHELALGILCKMQDSGIKPNRITIVSALPGCTNL-ESLRGGKEIHGYVFRHWF 343
Query: 251 ESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLY 310
D + LV +Y KC L + VF + +K++ +WN M++ +G E+
Sbjct: 344 IEDVTITTALVLLYAKCGDLELSRHVFN-TMPRKDVVAWNTMIMANSMHGKGGESLILFN 402
Query: 311 LMKASGIQ 318
M SG++
Sbjct: 403 KMLDSGVE 410
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 87/207 (42%), Gaps = 30/207 (14%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR----- 106
L+ M+ S L AR +FD M RD SW VM+ Y +Y+ + LF +M K
Sbjct: 217 LVNMYASSLGLKQARLVFDSMYHRDIVSWNVMLTAYFLNKEYERGLGLFHQMRKEGIKLN 276
Query: 107 ------------KKGHMLLVF------------PAWI-IVCVLKACVCTMNMELGKQVHG 141
+ G L P I IV L C ++ GK++HG
Sbjct: 277 QASWNAAISGCMQNGQHELALGILCKMQDSGIKPNRITIVSALPGCTNLESLRGGKEIHG 336
Query: 142 LLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQ 201
+F+ ++++T +L+ Y K LE + VF+ + R + V W I+ N G +
Sbjct: 337 YVFRHWFIEDVTITTALVLLYAKCGDLELSRHVFNTMPRKDVVAWNTMIMANSMHGKGGE 396
Query: 202 VFNDFKEMGRERIKKNSYTFSSVLKAC 228
F +M ++ NS TF VL C
Sbjct: 397 SLILFNKMLDSGVEPNSVTFIGVLSGC 423
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 78/165 (47%), Gaps = 2/165 (1%)
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
L+ A ++F ++ + WT I + + G + + + + ++ + + SV KA
Sbjct: 27 LKRALYLFDKIPEPDLRTWTILISGHTQHGFPKKAIDIYSTLLSRNVRPDKFVLLSVAKA 86
Query: 228 CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
C D +++H + ++ G D + L+DM+GKC+ + A VF+ +V K++
Sbjct: 87 CAA-SGDLVVAKKIHDDAIQFGFNKDLVLGNALIDMFGKCKFVNGARCVFDDMV-VKDVV 144
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
SW +M Y+ G+ + M +GI+ ++ + AC+
Sbjct: 145 SWTSMTYCYVNCGMCRQGILLFREMGLNGIRANSLTVSSILPACA 189
>gi|357154074|ref|XP_003576661.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
mitochondrial-like [Brachypodium distachyon]
Length = 802
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 89/332 (26%), Positives = 151/332 (45%), Gaps = 8/332 (2%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCG 60
+D+ L T +Y I C K+ A ++ H+ N L+ ++ CG
Sbjct: 42 LDSGELAPTPRVYHAFITACAQSKNLDDARKIHAHLASS-RFAGDAFLDNSLIHLYCKCG 100
Query: 61 QLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWII 120
+ A ++FD+M +D SW +I GY E I L M+K + F
Sbjct: 101 SVVEAHKVFDKMRNKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTF----- 155
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
+LKA + +G Q+H L K ++ + +L++ Y + ++ A VF +L
Sbjct: 156 ASLLKAVGAYADSGIGGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDS 215
Query: 181 HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQ 240
N V W A I R+G F EM R + +T+SS+ A G+ G+
Sbjct: 216 KNGVSWNALISGFARKGDGETALMVFAEMQRNGFEATHFTYSSIFSALAGI-GALEQGKW 274
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
+HA+++K + +V ++DMY K + DA +VFE +++ K++ +WN+ML + + G
Sbjct: 275 VHAHMIKSRQKLTAFVGNTMLDMYAKSGSMIDARKVFERVLN-KDLVTWNSMLTAFAQYG 333
Query: 301 LYVEATKFLYLMKASGIQIQESLINDLRIACS 332
L EA M+ SGI + + + ACS
Sbjct: 334 LGKEAVSHFEEMRKSGIYLNQISFLCILTACS 365
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 102/213 (47%), Gaps = 2/213 (0%)
Query: 124 LKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNT 183
+ AC + N++ +++H L + + L SLI+ Y K + +A VF +++ +
Sbjct: 58 ITACAQSKNLDDARKIHAHLASSRFAGDAFLDNSLIHLYCKCGSVVEAHKVFDKMRNKDM 117
Query: 184 VVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHA 243
V WT+ I + + M + R K N +TF+S+LKA G D G G Q+HA
Sbjct: 118 VSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAVGAYADSG-IGGQIHA 176
Query: 244 NIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYV 303
VK D YV L+DMY +C + A VF+ + D KN SWNA++ G+ R G
Sbjct: 177 LAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKL-DSKNGVSWNALISGFARKGDGE 235
Query: 304 EATKFLYLMKASGIQIQESLINDLRIACSSISA 336
A M+ +G + + + A + I A
Sbjct: 236 TALMVFAEMQRNGFEATHFTYSSIFSALAGIGA 268
>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Vitis vinifera]
Length = 709
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 75/271 (27%), Positives = 138/271 (50%), Gaps = 7/271 (2%)
Query: 62 LDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIV 121
L + R++F+ MP RD SW +I G +++ + MM R+ G+ L ++ +
Sbjct: 186 LGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDAL-----MMVREMGNADLRPDSFTLS 240
Query: 122 CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH 181
VL +N+ GK++HG + G ++ + SLI+ Y K ++D+ VF L +H
Sbjct: 241 SVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQH 300
Query: 182 NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQM 241
+ + W + I + G F + F++M +IK N +FSS++ AC + + G+Q+
Sbjct: 301 DGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHL-TTLHLGKQL 359
Query: 242 HANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGL 301
H I++ + + ++ LVDMY KC +R A +F+ + + ++ SW AM++GY +G
Sbjct: 360 HGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKM-ELYDMVSWTAMIMGYALHGH 418
Query: 302 YVEATKFLYLMKASGIQIQESLINDLRIACS 332
+A M+ G++ + ACS
Sbjct: 419 AYDAISLFKRMEVEGVKPNYVAFMAVLTACS 449
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/358 (23%), Positives = 159/358 (44%), Gaps = 39/358 (10%)
Query: 9 TTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQL 68
T ++ L++ + K + A +L I + P+LL + +L ++ + L + +
Sbjct: 4 TQNLCKTLLQNPSSVKSKSQAKQLHAQILRTSLPSPSLL--STILSIYSNLNLLHDSLLI 61
Query: 69 FDEMPLRDFN-SWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKAC 127
F+ +P +W +I Y + ++ F +M+ K VFP+ VLK+C
Sbjct: 62 FNSLPSPPTTLAWKSIIRCYTSHGLFLHSLSFFIQMLASGKYPDHNVFPS-----VLKSC 116
Query: 128 VCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADF-------------- 173
++ G+ VHG + +LG ++ +L+N Y KF LE+ +
Sbjct: 117 TLMKDLRFGESVHGCIIRLGMGFDLYTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVY 176
Query: 174 ---------------VFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
VF + + + V W I N + G +EMG ++ +S
Sbjct: 177 SKKEKESYYLGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDS 236
Query: 219 YTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE 278
+T SSVL + G+++H ++ G ++D ++ L+DMY KC + D+ RVF
Sbjct: 237 FTLSSVLPIFAEYVNLLK-GKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFY 295
Query: 279 LIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
++ I SWN+++ G ++NG++ E KF M + I+ + + AC+ ++
Sbjct: 296 MLPQHDGI-SWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTT 352
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 67/255 (26%), Positives = 117/255 (45%), Gaps = 23/255 (9%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMM--KRK 107
+ L+ M+ C ++D + ++F +P D SW +I G V + E + F +M+ K K
Sbjct: 275 SSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIK 334
Query: 108 KGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
H+ ++ AC + LGKQ+HG + + N+ + +L++ Y K
Sbjct: 335 PNHVSFS-------SIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIASALVDMYAKCGN 387
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
+ A ++F +++ ++ V WTA I+ GH + + FK M E +K N F +VL A
Sbjct: 388 IRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTA 447
Query: 228 C---GGVDDDGNCGRQMHANIVKI-GLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD- 282
C G VD+ M + I GLE + D+ G+ L +A +E I D
Sbjct: 448 CSHAGLVDEAWKYFNSMTQDYRIIPGLEH----YAAVADLLGRVGRLEEA---YEFISDM 500
Query: 283 --KKNIASWNAMLVG 295
+ + W+ +L
Sbjct: 501 HIEPTGSVWSTLLAA 515
>gi|414586383|tpg|DAA36954.1| TPA: hypothetical protein ZEAMMB73_991125 [Zea mays]
Length = 1021
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 81/292 (27%), Positives = 139/292 (47%), Gaps = 7/292 (2%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L N +L M+ G +D A+ LF +P++D SW +IVG + E I M+K
Sbjct: 460 LFVANAMLDMYSKLGAIDVAKALFSLIPVKDSVSWNALIVGLAHNEEEGEAIN----MLK 515
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
R K + + + AC +E GKQ+H K N ++ SLI+ Y KF
Sbjct: 516 RMKFYGI-ALDEVSFATAINACSNIWAIETGKQIHSASIKYNVCSNHAVGSSLIDLYSKF 574
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
+E + V + + + V A I + + F+++ ++ K +++TF+S+L
Sbjct: 575 GDVESSRKVLAHVDASSIVPINALITGLVQNNREDEAIELFQQVLKDGFKPSNFTFTSIL 634
Query: 226 KACGGVDDDGNCGRQMHANIVKIG-LESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
C G+Q+H +K L D + LV +Y KC+LL DA ++ E + D K
Sbjct: 635 SGCT-RPVSSVIGKQVHCYTLKSAILNQDTSLGISLVGIYLKCKLLEDANKLLEEVPDHK 693
Query: 285 NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
N+ W A + GY +NG V++ + M++ ++ E+ + ACS ++A
Sbjct: 694 NLVEWTATISGYAQNGYSVQSLVMFWRMRSYDVRSDEATFTSVLKACSEMAA 745
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 82/285 (28%), Positives = 140/285 (49%), Gaps = 8/285 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+ L+ ++ G ++++R++ + +I G V E I LF +++K
Sbjct: 565 SSLIDLYSKFGDVESSRKVLAHVDASSIVPINALITGLVQNNREDEAIELFQQVLKDGFK 624
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGS-SRNISLTGSLINFYGKFRCL 168
F + +L C ++ +GKQVH K +++ SL SL+ Y K + L
Sbjct: 625 PSNFTFTS-----ILSGCTRPVSSVIGKQVHCYTLKSAILNQDTSLGISLVGIYLKCKLL 679
Query: 169 EDADFVFSQLKRH-NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
EDA+ + ++ H N V WTA I + G+ Q F M ++ + TF+SVLKA
Sbjct: 680 EDANKLLEEVPDHKNLVEWTATISGYAQNGYSVQSLVMFWRMRSYDVRSDEATFTSVLKA 739
Query: 228 CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
C + + G+++H IVK G S E L+DMY KC + + +F+ + +++NI
Sbjct: 740 CSEMAALTD-GKEIHGLIVKSGFVSYETATSALMDMYSKCGDVISSFEIFKELKNRQNIM 798
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
WN+M+VG+ +NG EA M+ S I+ + + + IACS
Sbjct: 799 PWNSMIVGFAKNGYANEALLLFQKMQESQIKPDDVTLLGVLIACS 843
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 85/280 (30%), Positives = 130/280 (46%), Gaps = 7/280 (2%)
Query: 57 VSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP 116
S G+L AR L + + +W +I Y E L+ +M +K+G L+
Sbjct: 269 ASMGRLGDARTLLKRIRMTSTVAWNAVIASYSQSGLDSEVFGLYKDM--KKQG---LMPT 323
Query: 117 AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFS 176
+L A + G+Q+H K G N+ + SLIN Y K C+ DA VF
Sbjct: 324 RSTFASILSAAANMTAFDEGRQIHATAVKHGLDANVFVGSSLINLYVKHGCISDAKKVFD 383
Query: 177 QLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGN 236
N V+W A + + + F+ M R ++ + +TF SVL AC + +
Sbjct: 384 FSTEKNIVMWNAILYGFVQNELQEETIQMFQYMRRADLEADDFTFVSVLGACINLYSL-D 442
Query: 237 CGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGY 296
GRQ+H +K G+++D +V ++DMY K + A+ +F LI K ++ SWNA++VG
Sbjct: 443 LGRQVHCITIKNGMDADLFVANAMLDMYSKLGAIDVAKALFSLIPVKDSV-SWNALIVGL 501
Query: 297 IRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
N EA L MK GI + E ACS+I A
Sbjct: 502 AHNEEEGEAINMLKRMKFYGIALDEVSFATAINACSNIWA 541
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/282 (26%), Positives = 131/282 (46%), Gaps = 46/282 (16%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ CG++D AR++FD + D W MI GY V YQ+ + LF+ M K
Sbjct: 198 LVDMYAKCGEVDDARRMFDGIACPDTICWTSMIAGYHRVGRYQQALALFSRMEK------ 251
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+GS + ++I+ L DA
Sbjct: 252 ----------------------------------MGSVPDQVTCVTIISTLASMGRLGDA 277
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
+ +++ +TV W A I + + G +VF +K+M ++ + TF+S+L A +
Sbjct: 278 RTLLKRIRMTSTVAWNAVIASYSQSGLDSEVFGLYKDMKKQGLMPTRSTFASILSAAANM 337
Query: 232 D--DDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
D+ GRQ+HA VK GL+++ +V L+++Y K + DA++VF+ + KNI W
Sbjct: 338 TAFDE---GRQIHATAVKHGLDANVFVGSSLINLYVKHGCISDAKKVFDFSTE-KNIVMW 393
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
NA+L G+++N L E + M+ + ++ + + AC
Sbjct: 394 NAILYGFVQNELQEETIQMFQYMRRADLEADDFTFVSVLGAC 435
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/291 (23%), Positives = 134/291 (46%), Gaps = 7/291 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+ L+ ++V G + A+++FD ++ W ++ G+V +E I +F + M+R
Sbjct: 363 SSLINLYVKHGCISDAKKVFDFSTEKNIVMWNAILYGFVQNELQEETIQMF-QYMRRAD- 420
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
L + V VL AC+ +++LG+QVH + K G ++ + ++++ Y K ++
Sbjct: 421 ---LEADDFTFVSVLGACINLYSLDLGRQVHCITIKNGMDADLFVANAMLDMYSKLGAID 477
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A +FS + ++V W A IV + N K M I + +F++ + AC
Sbjct: 478 VAKALFSLIPVKDSVSWNALIVGLAHNEEEGEAINMLKRMKFYGIALDEVSFATAINACS 537
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ G+Q+H+ +K + S+ V L+D+Y K + + +V VD +I
Sbjct: 538 NIWAI-ETGKQIHSASIKYNVCSNHAVGSSLIDLYSKFGDVESSRKVLAH-VDASSIVPI 595
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKIN 340
NA++ G ++N EA + + G + + C+ +S I
Sbjct: 596 NALITGLVQNNREDEAIELFQQVLKDGFKPSNFTFTSILSGCTRPVSSVIG 646
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 84/185 (45%), Gaps = 13/185 (7%)
Query: 139 VHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNC--RE 196
+H + +LG L +L++ YG+ + A + A V +C R
Sbjct: 75 LHARILRLGLPLRGRLGDALVDLYGRSGRVGYAWRALACCTGAPASSAAASSVLSCHARS 134
Query: 197 GHFHQVFNDFKEMGRERI--KKNSYTFSSVLKAC---GGVDDDGNCGRQMHANIVKIGLE 251
G V + F+ + R I + + + VL AC G ++ GRQ+H +++K G
Sbjct: 135 GSPRDVLDAFQRI-RCSIGSTPDQFGIAVVLSACSRLGALEH----GRQVHCDVLKSGFC 189
Query: 252 SDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYL 311
S + Q GLVDMY KC + DA R+F+ I I W +M+ GY R G Y +A
Sbjct: 190 SSVFCQAGLVDMYAKCGEVDDARRMFDGIACPDTIC-WTSMIAGYHRVGRYQQALALFSR 248
Query: 312 MKASG 316
M+ G
Sbjct: 249 MEKMG 253
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 80/217 (36%), Gaps = 37/217 (17%)
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
I VL AC +E G+QVH + K G ++ L++ Y K ++DA +F +
Sbjct: 160 IAVVLSACSRLGALEHGRQVHCDVLKSGFCSSVFCQAGLVDMYAKCGEVDDARRMFDGIA 219
Query: 180 RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGR 239
+T+ WT+ I R G + Q F M
Sbjct: 220 CPDTICWTSMIAGYHRVGRYQQALALFSRME----------------------------- 250
Query: 240 QMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRN 299
K+G D+ ++ L DA + + I +A WNA++ Y ++
Sbjct: 251 -------KMGSVPDQVTCVTIISTLASMGRLGDARTLLKRIRMTSTVA-WNAVIASYSQS 302
Query: 300 GLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
GL E MK G+ S + A ++++A
Sbjct: 303 GLDSEVFGLYKDMKKQGLMPTRSTFASILSAAANMTA 339
>gi|357128364|ref|XP_003565843.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g47840-like [Brachypodium distachyon]
Length = 728
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 80/268 (29%), Positives = 125/268 (46%), Gaps = 13/268 (4%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
++ + T N L ++ G + A M RD +W +I YV +E I
Sbjct: 246 KLGLDATPYVANTLATLYARWGDVGRALAAVGRMGSRDVAAWTTVISSYVQTGRAKEAIE 305
Query: 99 LFAEMMKRKKGHML----LVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISL 154
F M++ + + + A I C +CVC LG+Q+HG + + G + S+
Sbjct: 306 AFVAMVRNEAVNAASPNEYTYAAVIAACADTSCVC-----LGEQLHGQVAQRGFASARSV 360
Query: 155 TGSLINFYGKFRC-LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRER 213
SL+ Y + L AD VF + + V W+A I +EG + F F EM R
Sbjct: 361 ANSLVTLYARVAGRLSAADAVFQESAAKDVVSWSAIISGYAQEGLAGEAFALFTEMRRHH 420
Query: 214 -IKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRD 272
+ N +T +S+L C + GRQ+HA ++ GLE ++ LVDMYGK + D
Sbjct: 421 CPRPNEFTLASLLSVCATAATL-DAGRQLHALVMAAGLEHHAMIRSALVDMYGKSGSMSD 479
Query: 273 AERVFELIVDKKNIASWNAMLVGYIRNG 300
A+ VF K ++ SW AM+VG+ +G
Sbjct: 480 ADVVFSNRT-KDDVVSWTAMIVGHAEHG 506
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 67/241 (27%), Positives = 113/241 (46%), Gaps = 15/241 (6%)
Query: 59 CGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAW 118
G+L A +F E +D SW+ +I GY E LF EM + H +
Sbjct: 372 AGRLSAADAVFQESAAKDVVSWSAIISGYAQEGLAGEAFALFTEMRR----HHCPRPNEF 427
Query: 119 IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL 178
+ +L C ++ G+Q+H L+ G + + +L++ YGK + DAD VFS
Sbjct: 428 TLASLLSVCATAATLDAGRQLHALVMAAGLEHHAMIRSALVDMYGKSGSMSDADVVFSNR 487
Query: 179 KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC---GGVDDDG 235
+ + V WTA IV + G + F+EM +K + F VL AC G V+
Sbjct: 488 TKDDVVSWTAMIVGHAEHGQSKRALELFEEMCLVGLKPDHVAFIGVLSACCHAGEVE--- 544
Query: 236 NCGRQMHANIVKI-GLE-SDEYVQCGLVDMYGKCRLLRDAERVF-ELIVDKKNIASWNAM 292
G + + + KI GLE + E+ C +VD+ G+ + +AE + + ++++ W ++
Sbjct: 545 -LGLRYLSAMSKIYGLEPAKEHYGC-VVDLLGRAGRINEAEELIGRMAANERDGVVWTSL 602
Query: 293 L 293
L
Sbjct: 603 L 603
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 75/319 (23%), Positives = 126/319 (39%), Gaps = 25/319 (7%)
Query: 11 DMYTCLIKECTFQKDSAGAFELLNHIRK------RVNIKPTLLFLNRLLLMHVSCGQLDT 64
D + F+ +A LL H R + ++ L + G+L
Sbjct: 108 DAADPFVLSLVFKASAADPGLLLPHAASLHAFAVRSSALSSVFVATALADAYAKAGRLAL 167
Query: 65 ARQLFDEMPL--RDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVC 122
A ++FDEMP R+ SW ++ + + FAEM + + +
Sbjct: 168 ALRVFDEMPAARRNVVSWTTLVAALSRAGRRHDALRAFAEM----RASAGVACDSHAYAA 223
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
L AC + G++VH L KLG + +L Y ++ + A ++ +
Sbjct: 224 ALTACADAGMLSRGREVHALCAKLGLDATPYVANTLATLYARWGDVGRALAAVGRMGSRD 283
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRER----IKKNSYTFSSVLKACGGVDDDGNC- 237
WT I + + G + F M R N YT+++V+ AC D +C
Sbjct: 284 VAAWTTVISSYVQTGRAKEAIEAFVAMVRNEAVNAASPNEYTYAAVIAACA----DTSCV 339
Query: 238 --GRQMHANIVKIGLESDEYVQCGLVDMYGK-CRLLRDAERVFELIVDKKNIASWNAMLV 294
G Q+H + + G S V LV +Y + L A+ VF+ K++ SW+A++
Sbjct: 340 CLGEQLHGQVAQRGFASARSVANSLVTLYARVAGRLSAADAVFQESA-AKDVVSWSAIIS 398
Query: 295 GYIRNGLYVEATKFLYLMK 313
GY + GL EA M+
Sbjct: 399 GYAQEGLAGEAFALFTEMR 417
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 69/295 (23%), Positives = 114/295 (38%), Gaps = 44/295 (14%)
Query: 43 KPTLLF--LNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLF 100
P LL LN L V G+L A LFD P RD S++ ++ G+ D+ + LF
Sbjct: 35 SPLLLLQDLNARLKRLVQSGRLADAHSLFDGAPHRDEASYSALLAGHAAAGDFAGAMALF 94
Query: 101 AEMMKRKKGHMLL-VFPAWIIVCVLKACVCTMNMEL--GKQVHGLLFKLGSSRNISLTGS 157
+ + L +++ V KA + L +H + + ++ + +
Sbjct: 95 VRLRRTSSSSRPLDAADPFVLSLVFKASAADPGLLLPHAASLHAFAVRSSALSSVFVATA 154
Query: 158 LINFYGKFRCLEDADFVFSQLK--RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIK 215
L + Y K L A VF ++ R N V WT + R G H F EM
Sbjct: 155 LADAYAKAGRLALALRVFDEMPAARRNVVSWTTLVAALSRAGRRHDALRAFAEM------ 208
Query: 216 KNSYTFSSVLKACGGVDDDGNC----------------GRQMHANIVKIGLESDEYVQCG 259
+A GV D + GR++HA K+GL++ YV
Sbjct: 209 ----------RASAGVACDSHAYAAALTACADAGMLSRGREVHALCAKLGLDATPYVANT 258
Query: 260 LVDMYGKCRLLRDAERVFELI--VDKKNIASWNAMLVGYIRNGLYVEATKFLYLM 312
L +Y + D R + + +++A+W ++ Y++ G EA + M
Sbjct: 259 LATLYAR---WGDVGRALAAVGRMGSRDVAAWTTVISSYVQTGRAKEAIEAFVAM 310
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 240 QMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVF-ELIVDKKNIASWNAMLVGYIR 298
+HA V+ S +V L D Y K L A RVF E+ ++N+ SW ++ R
Sbjct: 135 SLHAFAVRSSALSSVFVATALADAYAKAGRLALALRVFDEMPAARRNVVSWTTLVAALSR 194
Query: 299 NGLYVEATKFLYLMKASG 316
G +A + M+AS
Sbjct: 195 AGRRHDALRAFAEMRASA 212
Score = 37.4 bits (85), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 61/142 (42%), Gaps = 12/142 (8%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEM--MKRKKG 109
L+ M+ G + A +F D SW MIVG+ + + + LF EM + K
Sbjct: 467 LVDMYGKSGSMSDADVVFSNRTKDDVVSWTAMIVGHAEHGQSKRALELFEEMCLVGLKPD 526
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKL-GSSRNISLTGSLINFYGKFRCL 168
H+ + VL AC +ELG + + K+ G G +++ G+ +
Sbjct: 527 HVAF-------IGVLSACCHAGEVELGLRYLSAMSKIYGLEPAKEHYGCVVDLLGRAGRI 579
Query: 169 EDADFVFSQLK--RHNTVVWTA 188
+A+ + ++ + VVWT+
Sbjct: 580 NEAEELIGRMAANERDGVVWTS 601
>gi|297794157|ref|XP_002864963.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297310798|gb|EFH41222.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 720
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 93/330 (28%), Positives = 167/330 (50%), Gaps = 14/330 (4%)
Query: 9 TTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQL 68
TT ++ L+++C ++ +G + + K + P L ++L+ + CG++ ARQL
Sbjct: 46 TTHTFSQLLRQCIDERSISGIKNIQAQMLK--SGFPVELSGSKLVDASLKCGEIGYARQL 103
Query: 69 FDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCVLKAC 127
FD MP R +W +I Y+ +E + ++ M+ V P + + V KA
Sbjct: 104 FDGMPERHIVTWNSIIAYYIKHRRSKEAVEMYRLMISNN------VLPDEYTLSSVFKAF 157
Query: 128 VCTMNMELGKQVHGLLFKLG-SSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVW 186
+ ++ HGL LG N+ + +L++ Y KF +A V +++ + V+
Sbjct: 158 SDLSLEKEAQRSHGLAVILGLEVSNVFVGSALVDMYVKFGKTREAKLVLDRVEEKDVVLI 217
Query: 187 TAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIV 246
TA IV ++G + F+ M E+++ N YT++SVL +CG + D GN G+ +H +V
Sbjct: 218 TALIVGYSQKGEDTEAVKAFQSMLVEKVQPNEYTYASVLISCGNLKDIGN-GKLIHGLMV 276
Query: 247 KIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEA- 305
K G ES Q L+ MY +C L+ D+ VF+ I N +W +++ G ++NG A
Sbjct: 277 KSGFESALASQTSLLTMYLRCSLVDDSLLVFKCI-KYPNQVTWTSLISGLVQNGREETAL 335
Query: 306 TKFLYLMKASGIQIQESLINDLRIACSSIS 335
+F +M+ S +L + LR CS+++
Sbjct: 336 IEFRKMMRDSVKPNSFTLSSALR-GCSNLA 364
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/283 (28%), Positives = 138/283 (48%), Gaps = 9/283 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+V G+ A+ + D + +D +IVGY + E + F M+ K
Sbjct: 189 LVDMYVKFGKTREAKLVLDRVEEKDVVLITALIVGYSQKGEDTEAVKAFQSMLVEK---- 244
Query: 112 LLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
V P + VL +C ++ GK +HGL+ K G ++ SL+ Y + ++D
Sbjct: 245 --VQPNEYTYASVLISCGNLKDIGNGKLIHGLMVKSGFESALASQTSLLTMYLRCSLVDD 302
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
+ VF +K N V WT+ I + G +F++M R+ +K NS+T SS L+ C
Sbjct: 303 SLLVFKCIKYPNQVTWTSLISGLVQNGREETALIEFRKMMRDSVKPNSFTLSSALRGCSN 362
Query: 231 VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWN 290
+ GRQ+H + K G + D+Y GL+++YGKC A VF+ + + ++ S N
Sbjct: 363 LAMFEE-GRQVHGIVSKYGFDRDKYAGSGLIELYGKCGCSDMARLVFDTL-SEVDVISLN 420
Query: 291 AMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSS 333
M+ Y +NG EA + M G+Q + + + +AC++
Sbjct: 421 TMIYSYAQNGFGREALELFERMINLGLQPNDVTVLSVLLACNN 463
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 64/123 (52%), Gaps = 5/123 (4%)
Query: 217 NSYTFSSVLKACGGVDDDGNCG-RQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAER 275
++TFS +L+ C +D+ G + + A ++K G E LVD KC + A +
Sbjct: 46 TTHTFSQLLRQC--IDERSISGIKNIQAQMLKSGFPV-ELSGSKLVDASLKCGEIGYARQ 102
Query: 276 VFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
+F+ + ++ +I +WN+++ YI++ EA + LM ++ + E ++ + A S +S
Sbjct: 103 LFDGMPER-HIVTWNSIIAYYIKHRRSKEAVEMYRLMISNNVLPDEYTLSSVFKAFSDLS 161
Query: 336 ASK 338
K
Sbjct: 162 LEK 164
>gi|302801269|ref|XP_002982391.1| hypothetical protein SELMODRAFT_116290 [Selaginella moellendorffii]
gi|300149983|gb|EFJ16636.1| hypothetical protein SELMODRAFT_116290 [Selaginella moellendorffii]
Length = 779
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 87/282 (30%), Positives = 142/282 (50%), Gaps = 15/282 (5%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVA-DYQECITLFAEMMKRKKGHMLL 113
M+ CG LD A ++F ++ +W+ ++ Y + D + + L+ M +
Sbjct: 1 MYGKCGDLDAASEVFGKLDPLHVAAWSALLGAYANSENDAVQALELYKRM------QLEG 54
Query: 114 VFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDAD 172
V P + V LKAC + G++VH + +LG +I +LIN YGK R EDA
Sbjct: 55 VRPDSVTFVTCLKACTVEGALGDGRKVHAHIRELGLETDIYAANALINMYGKCRSPEDAF 114
Query: 173 FVFSQLKRHNTVVWTAKIVNNCREGHF-HQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
+FS+++ N V WT+ I N + GH + F++M E I+ N T +VL+AC
Sbjct: 115 QLFSRMESPNVVSWTSVIGNFAQYGHLGRESVLLFRKMELEGIRPNLITMVAVLRACNLT 174
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
D GRQ+H +++ G+ D + LVDMY K + +A+ V + K+++ SWN
Sbjct: 175 D-----GRQVHGYVLEAGMSLDTSLGNALVDMYCKTGGVDEADVVLREM-PKRDVISWNI 228
Query: 292 MLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSS 333
M+ GY ++G E + L+ M+ G+ + L ACSS
Sbjct: 229 MISGYAQSGDCKEGLRCLWRMQQDGLSPTKVTYATLLNACSS 270
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 85/314 (27%), Positives = 153/314 (48%), Gaps = 16/314 (5%)
Query: 7 PITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTAR 66
P + TCL K CT + ++ HIR+ + ++ + N L+ M+ C + A
Sbjct: 57 PDSVTFVTCL-KACTVEGALGDGRKVHAHIRE-LGLETDIYAANALINMYGKCRSPEDAF 114
Query: 67 QLFDEMPLRDFNSWAVMIVGYVDVADY-QECITLFAEMMKRKKGHMLLVFPAWI-IVCVL 124
QLF M + SW +I + +E + LF +M + + P I +V VL
Sbjct: 115 QLFSRMESPNVVSWTSVIGNFAQYGHLGRESVLLFRKM------ELEGIRPNLITMVAVL 168
Query: 125 KACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTV 184
+AC N+ G+QVHG + + G S + SL +L++ Y K +++AD V ++ + + +
Sbjct: 169 RAC----NLTDGRQVHGYVLEAGMSLDTSLGNALVDMYCKTGGVDEADVVLREMPKRDVI 224
Query: 185 VWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHAN 244
W I + G + M ++ + T++++L AC +D G G+ +H +
Sbjct: 225 SWNIMISGYAQSGDCKEGLRCLWRMQQDGLSPTKVTYATLLNACSSEEDLGE-GKSIHRS 283
Query: 245 IVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVE 304
+V +GL+ DE V+ L+ MYGKC L D +R V ++N +WN ++ Y R + +
Sbjct: 284 VVDMGLDRDEVVKSFLLGMYGKCGSLEDVKRS-SCEVHERNTIAWNTIIGAYARYSDHFQ 342
Query: 305 ATKFLYLMKASGIQ 318
A + M+ G++
Sbjct: 343 ALRSFQQMQLEGVK 356
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 81/289 (28%), Positives = 128/289 (44%), Gaps = 8/289 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ G +D A + EMP RD SW +MI GY D +E + M +
Sbjct: 196 NALVDMYCKTGGVDEADVVLREMPKRDVISWNIMISGYAQSGDCKEGLRCLWRMQQDGLS 255
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ + +L AC ++ GK +H + +G R+ + L+ YGK LE
Sbjct: 256 PTKVTY-----ATLLNACSSEEDLGEGKSIHRSVVDMGLDRDEVVKSFLLGMYGKCGSLE 310
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
D ++ NT+ W I R Q F++M E +K ++ TF +L C
Sbjct: 311 DVKRSSCEVHERNTIAWNTIIGAYARYSDHFQALRSFQQMQLEGVKADAVTFVLMLGTCS 370
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
G +H I ++G ES V L MY KC L A ++FE + +N SW
Sbjct: 371 SPAHLAQ-GILLHDWISQLGFESI-IVHNSLTAMYAKCGSLDAARKMFEEM-PSRNSVSW 427
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASK 338
N+++ I++G + +A KF MK G + E + AC+ + +K
Sbjct: 428 NSLMSAAIQHGCHADAHKFFQRMKLEGSRPDEVTCISMLDACTKQANAK 476
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/280 (24%), Positives = 134/280 (47%), Gaps = 13/280 (4%)
Query: 45 TLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMM 104
+++ N L M+ CG LD AR++F+EMP R+ SW ++ + + + F M
Sbjct: 392 SIIVHNSLTAMYAKCGSLDAARKMFEEMPSRNSVSWNSLMSAAIQHGCHADAHKFFQRM- 450
Query: 105 KRKKGHMLLVFPAWII-VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYG 163
+ +G P + + +L AC N + G +H ++ + G + + +LI Y
Sbjct: 451 -KLEGSR----PDEVTCISMLDACTKQANAKEGSSIHQMVVESGFDKRTGVANALIFMYA 505
Query: 164 KFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSS 223
K E A VF + NTV W + +G F +M + ++ T+ +
Sbjct: 506 KLGDHEAARNVFDAMAERNTVSWNTILAAYVEKGLNRDAVEMFWKM---DVARDKVTYVA 562
Query: 224 VLKACGGVDDDGNCGRQMHANIVKIGLES--DEYVQCGLVDMYGKCRLLRDAERVFELIV 281
L AC G+ G+ +H ++ G + D LV+MYGKC L++A ++F+ ++
Sbjct: 563 ALDACSGLAGGLAHGKLIHGYMLDHGFSNRLDTVAATALVNMYGKCGSLQEARKIFDGML 622
Query: 282 DKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQE 321
+++ +W +++V Y ++ +A K + +M+ G+++ +
Sbjct: 623 -HRDVVTWTSLIVAYAQHSEIEQALKLVKIMEQEGVKVDD 661
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/253 (25%), Positives = 113/253 (44%), Gaps = 19/253 (7%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEM-MKRKK 108
N L+ M+ G + AR +FD M R+ SW ++ YV+ ++ + +F +M + R K
Sbjct: 498 NALIFMYAKLGDHEAARNVFDAMAERNTVSWNTILAAYVEKGLNRDAVEMFWKMDVARDK 557
Query: 109 GHMLLVFPAWIIVCVLKACV-CTMNMELGKQVHGLLFKLGSSRNISLTGS--LINFYGKF 165
V L AC + GK +HG + G S + + L+N YGK
Sbjct: 558 ---------VTYVAALDACSGLAGGLAHGKLIHGYMLDHGFSNRLDTVAATALVNMYGKC 608
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
L++A +F + + V WT+ IV + Q K M +E +K + F S+L
Sbjct: 609 GSLQEARKIFDGMLHRDVVTWTSLIVAYAQHSEIEQALKLVKIMEQEGVKVDDVVFLSIL 668
Query: 226 KAC--GGVDDDGNCGRQMHANIVKIGLESD-EYVQCGLVDMYGKCRLLRDAERVFELIVD 282
C G+ ++G C + + I G+ E+ C ++D+ G+ L AE++ + +
Sbjct: 669 SGCDHSGLLEEG-C-KYFVSMIDDYGISPRLEHYNC-IIDVLGRAGHLDLAEKLVDRLPS 725
Query: 283 KKNIASWNAMLVG 295
+ + W +L
Sbjct: 726 RSDSKVWMTLLAA 738
>gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera]
Length = 729
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 96/330 (29%), Positives = 162/330 (49%), Gaps = 13/330 (3%)
Query: 11 DMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFL-NRLLLMHVSCGQLDTARQLF 69
++Y ++++C + F++ H + VN FL +RLL ++ G ++ AR++F
Sbjct: 11 EIYASILQKCRKLYNLRLGFQV--HAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMF 68
Query: 70 DEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVC 129
D+M R+ SW ++ Y + DY+E I LF M+ VFP V KAC
Sbjct: 69 DKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPK-----VFKACSE 123
Query: 130 TMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAK 189
N +GK V+ + +G N + GS+++ + K ++ A F +++ + +W
Sbjct: 124 LKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIM 183
Query: 190 IVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKI- 248
+ +G F + N F++M E +K NS T +S + AC + + GR++H +K+
Sbjct: 184 VSGYTSKGEFKKALNVFRKMVLEGVKPNSITIASAVSACTNLSLLRH-GREIHGYCIKVE 242
Query: 249 GLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML--VGYIRNGLYVEAT 306
L+SD V LVD Y KCR + A R F +I + ++ SWNAML G+ + G A
Sbjct: 243 ELDSDLLVGNSLVDYYAKCRSVEVARRKFGMI-KQTDLVSWNAMLAVTGFTQYGDGKAAL 301
Query: 307 KFLYLMKASGIQIQESLINDLRIACSSISA 336
+F M + E D+ + S ISA
Sbjct: 302 EFFQRMHIACSVFSELSTRDVVVWNSIISA 331
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 79/326 (24%), Positives = 148/326 (45%), Gaps = 53/326 (16%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
+L M + CG++D AR+ F+E+ +D W +M+ GY ++++ + +F +M+
Sbjct: 152 ILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALNVFRKMVLEG---- 207
Query: 112 LLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTG-SLINFYGKFRCLE 169
V P I I + AC + G+++HG K+ + L G SL+++Y K R +E
Sbjct: 208 --VKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVE 265
Query: 170 DA----------------------------------DF---------VFSQLKRHNTVVW 186
A +F VFS+L + VVW
Sbjct: 266 VARRKFGMIKQTDLVSWNAMLAVTGFTQYGDGKAALEFFQRMHIACSVFSELSTRDVVVW 325
Query: 187 TAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIV 246
+ I + G + +EM ++ N+ T S L AC + G+++H I+
Sbjct: 326 NSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQ-GKEIHQFII 384
Query: 247 KIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEAT 306
+ GL++ ++ L+DMYG+C ++ + R+F+L+ ++++ SWN M+ Y +G ++A
Sbjct: 385 RCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLM-PQRDLVSWNVMISVYGMHGFGMDAV 443
Query: 307 KFLYLMKASGIQIQESLINDLRIACS 332
+ G++ +L ACS
Sbjct: 444 NLFQQFRTMGLKPNHITFTNLLSACS 469
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/253 (21%), Positives = 99/253 (39%), Gaps = 19/253 (7%)
Query: 43 KPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAE 102
K L F R MH++C +F E+ RD W +I + L E
Sbjct: 298 KAALEFFQR---MHIAC-------SVFSELSTRDVVVWNSIISACAQSGRSVNALDLLRE 347
Query: 103 MMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFY 162
M + +V L AC + GK++H + + G + SLI+ Y
Sbjct: 348 MNLSN-----VEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMY 402
Query: 163 GKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFS 222
G+ ++ + +F + + + V W I G N F++ +K N TF+
Sbjct: 403 GRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFT 462
Query: 223 SVLKAC--GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELI 280
++L AC G+ ++G +M + ++Y C +VD+ + + E +
Sbjct: 463 NLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYA-C-MVDLLSRAGQFNETLEFIEKM 520
Query: 281 VDKKNIASWNAML 293
+ N A W ++L
Sbjct: 521 PFEPNAAVWGSLL 533
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 64/119 (53%), Gaps = 2/119 (1%)
Query: 221 FSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELI 280
++S+L+ C + + G Q+HA +V G++ E++ L+++Y + + DA R+F+ +
Sbjct: 13 YASILQKCRKLYN-LRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKM 71
Query: 281 VDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKI 339
++N+ SW A++ Y G Y E K YLM G++ + + ACS + ++
Sbjct: 72 -SERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRV 129
>gi|449461477|ref|XP_004148468.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g39530-like [Cucumis sativus]
gi|449515698|ref|XP_004164885.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g39530-like [Cucumis sativus]
Length = 837
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 88/321 (27%), Positives = 151/321 (47%), Gaps = 13/321 (4%)
Query: 20 CTFQKDSAGAFELLNHIRK------RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMP 73
C+ S G+ + L H R+ +V ++ N L+ M+ C LD A+++FD +
Sbjct: 347 CSSVLTSCGSVDALQHGRQIHSYVIKVCLEHDNFVTNALIDMYSKCNALDDAKRVFDVVT 406
Query: 74 LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNM 133
+ MI GY + +F EM + L F V +L + +
Sbjct: 407 CHSVVYYNAMIEGYSRQGYLCGALEVFQEMRLKHVSPSFLTF-----VSLLGLSAALLCL 461
Query: 134 ELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNN 193
+L KQ+HGL+ K G S + + +LI+ Y K C+ DA +VF + VVW +
Sbjct: 462 QLSKQIHGLIIKYGFSLDKFTSSALIDVYSKCSCIRDARYVFEGTTNKDIVVWNSLFSGY 521
Query: 194 CREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESD 253
+ + F + ++ R + N +TF+++ A + + G+Q H ++K+GLESD
Sbjct: 522 NLQLKSEEAFKLYSDLQLSRERPNEFTFAALTTAASILASLPH-GQQFHNQVMKMGLESD 580
Query: 254 EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMK 313
++ LVDMY KC + +AE++F V K+ A WN+M+ Y ++G EA + M
Sbjct: 581 PFITNALVDMYAKCGSVEEAEKIFSSSV-WKDTACWNSMISMYAQHGKVEEALRMFETMV 639
Query: 314 ASGIQIQESLINDLRIACSSI 334
++ I + ACS +
Sbjct: 640 SNNINPNYVTFVSVLSACSHV 660
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 81/291 (27%), Positives = 135/291 (46%), Gaps = 7/291 (2%)
Query: 47 LFLNRLLL-MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
+FL+ LLL + G + A LFD+MP R+ SW+ ++ Y + ++ + F E +
Sbjct: 75 VFLSNLLLHSYFKIGSVFDAGTLFDKMPNRNLVSWSSVVSMYTQLGYNEKALLYFLEFQR 134
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
+ +I+ +++ACV E G QVH + K G ++ + SL+ Y K
Sbjct: 135 TCVDKL----NEYILASIIRACVQRDGGEPGSQVHSYVIKSGFGEDVYVGTSLVVLYAKH 190
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
++ A VF L V WTA I + G F M + + Y SS+L
Sbjct: 191 GEIDKARLVFDGLVLKTPVTWTAIITGYTKSGRSEVSLQLFNLMMESNVIPDKYVLSSIL 250
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
AC V G+Q+HA +++ + D L+D Y KC ++ + +F+ + D KN
Sbjct: 251 NAC-SVLGYLKGGKQIHAYVLRSETKMDVSTYNVLIDFYTKCGRVKAGKALFDRL-DVKN 308
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
I SW M+ GY++N EA + + M G + E + + +C S+ A
Sbjct: 309 IISWTTMIAGYMQNSYDWEAVELVGEMFRMGWKPDEYACSSVLTSCGSVDA 359
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 82/288 (28%), Positives = 135/288 (46%), Gaps = 12/288 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ + CG++ + LFD + +++ SW MI GY+ + E + L EM +
Sbjct: 282 NVLIDFYTKCGRVKAGKALFDRLDVKNIISWTTMIAGYMQNSYDWEAVELVGEMFR---- 337
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
M + VL +C ++ G+Q+H + K+ + +T +LI+ Y K L+
Sbjct: 338 -MGWKPDEYACSSVLTSCGSVDALQHGRQIHSYVIKVCLEHDNFVTNALIDMYSKCNALD 396
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
DA VF + H+ V + A I R+G+ F+EM + + + TF S+L
Sbjct: 397 DAKRVFDVVTCHSVVYYNAMIEGYSRQGYLCGALEVFQEMRLKHVSPSFLTFVSLLGLS- 455
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+Q+H I+K G D++ L+D+Y KC +RDA VFE + K+I W
Sbjct: 456 AALLCLQLSKQIHGLIIKYGFSLDKFTSSALIDVYSKCSCIRDARYVFEGTTN-KDIVVW 514
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISAS 337
N++ GY EA K LY S +Q+ N+ A + +AS
Sbjct: 515 NSLFSGYNLQLKSEEAFK-LY----SDLQLSRERPNEFTFAALTTAAS 557
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 104/211 (49%), Gaps = 3/211 (1%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
+L A V ++ ++VH + G ++ L+ L++ Y K + DA +F ++ N
Sbjct: 46 LLLAPVSNKSILYYRKVHCQVVLWGLQYDVFLSNLLLHSYFKIGSVFDAGTLFDKMPNRN 105
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKK-NSYTFSSVLKACGGVDDDGNCGRQM 241
V W++ + + G+ + F E R + K N Y +S+++AC D G G Q+
Sbjct: 106 LVSWSSVVSMYTQLGYNEKALLYFLEFQRTCVDKLNEYILASIIRACVQ-RDGGEPGSQV 164
Query: 242 HANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGL 301
H+ ++K G D YV LV +Y K + A VF+ +V K + +W A++ GY ++G
Sbjct: 165 HSYVIKSGFGEDVYVGTSLVVLYAKHGEIDKARLVFDGLVLKTPV-TWTAIITGYTKSGR 223
Query: 302 YVEATKFLYLMKASGIQIQESLINDLRIACS 332
+ + LM S + + +++ + ACS
Sbjct: 224 SEVSLQLFNLMMESNVIPDKYVLSSILNACS 254
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/245 (22%), Positives = 105/245 (42%), Gaps = 12/245 (4%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ ++ C + AR +F+ +D W + GY +E L++++ ++
Sbjct: 486 LIDVYSKCSCIRDARYVFEGTTNKDIVVWNSLFSGYNLQLKSEEAFKLYSDLQLSRERPN 545
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
F A + A ++ G+Q H + K+G + +T +L++ Y K +E+A
Sbjct: 546 EFTFAA-----LTTAASILASLPHGQQFHNQVMKMGLESDPFITNALVDMYAKCGSVEEA 600
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--- 228
+ +FS +T W + I + G + F+ M I N TF SVL AC
Sbjct: 601 EKIFSSSVWKDTACWNSMISMYAQHGKVEEALRMFETMVSNNINPNYVTFVSVLSACSHV 660
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
G V+D G Q + ++ + G+E +V + G+ L +A E + +
Sbjct: 661 GFVED----GLQHYNSMARYGIEPGIEHYASVVTLLGRAGRLTEAREFIEKMTIRPAALV 716
Query: 289 WNAML 293
W ++L
Sbjct: 717 WRSLL 721
>gi|357449413|ref|XP_003594983.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355484031|gb|AES65234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 702
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/271 (29%), Positives = 127/271 (46%), Gaps = 12/271 (4%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR-- 106
+N ++ M+ CG+ AR++FDE+ +D SW ++ GY + +E + +F + +
Sbjct: 155 VNSMVTMYFRCGENGVARKVFDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREESG 214
Query: 107 -KKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
+ M LV VL AC ++ELG+ V G + + G N + +LI+ Y K
Sbjct: 215 FEPDEMSLV-------SVLGACGELGDLELGRWVEGFVVERGMKVNSYIGSALISMYSKC 267
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
L + +F + + + W A I + G + + F M + N T ++VL
Sbjct: 268 GELVSSRRIFDGMPSRDFITWNAAISAYAQNGMADEAISLFHSMKENGVDPNKVTLTAVL 327
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
AC + + G+QM GL+ D +V L+DMY KC L A+RVF + +KN
Sbjct: 328 SACASI-GALDLGKQMDEYATHRGLQHDIFVATALIDMYAKCGSLESAQRVFN-DMPRKN 385
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASG 316
ASWNAM+ +G EA M G
Sbjct: 386 DASWNAMISALASHGKAKEALSLFERMSDEG 416
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 105/231 (45%), Gaps = 30/231 (12%)
Query: 116 PAWIIVCVLKACVCTMNMELGKQVHGLLFKLGS--------SRNISL---TGSLINFYGK 164
P ++++ +LK C T ++ Q+H F + S S++ISL T S + F
Sbjct: 20 PIFLLLSLLKQCPSTKTLQ---QIH-TQFTIHSIHKPNHLLSQSISLKDFTYSTLIF--S 73
Query: 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
D+ F+ + R T W + + + +M I N++TF V
Sbjct: 74 HITPHPNDYAFNIMLRATTTTWH----------DYPLTLHLYHQMKTLNISPNNFTFPFV 123
Query: 225 LKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
AC +++ R H + K+GL++D + +V MY +C A +VF+ I + K
Sbjct: 124 FLACANLEEI-RMARLAHCEVFKLGLDNDHHTVNSMVTMYFRCGENGVARKVFDEITE-K 181
Query: 285 NIASWNAMLVGYIRNGLYVEATK-FLYLMKASGIQIQESLINDLRIACSSI 334
++ SWN++L GY + G EA + F L + SG + E + + AC +
Sbjct: 182 DLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVSVLGACGEL 232
>gi|297832866|ref|XP_002884315.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330155|gb|EFH60574.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 861
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 87/358 (24%), Positives = 159/358 (44%), Gaps = 27/358 (7%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCG 60
M + ++ +Y +++ C + +L H K + + L M+ C
Sbjct: 230 MQKVNAGVSQSIYASVLRSCAALSELRLGGQLHAHALKS-DFAADGIVRTATLDMYAKCD 288
Query: 61 QLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWII 120
+ A+ LFD+ + S+ MI GY + + LF +M G F +
Sbjct: 289 NMQDAQILFDKSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLG-----FDEISL 343
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
V +AC + G Q++ L K S ++ + + I+ YGK + L +A VF +++R
Sbjct: 344 SGVFRACALVKGLSEGLQIYDLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRR 403
Query: 181 HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQ 240
+ V W A I + + G ++ F M R RI+ + +TF SVLKAC G G +
Sbjct: 404 RDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSVLKACTG--GSLGYGME 461
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA------------- 287
+H++IVK G+ S+ V C L+DMY KC ++ +AE++ + N++
Sbjct: 462 IHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRTNVSGTMEELEKMHNKR 521
Query: 288 ------SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKI 339
SWN+++ GY+ +A M GI + + C++++++ +
Sbjct: 522 LQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGL 579
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/324 (25%), Positives = 154/324 (47%), Gaps = 12/324 (3%)
Query: 9 TTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQL 68
TT + CL++ T +D A + + + R ++ N+++ + + A
Sbjct: 40 TTFVLNCLLQVYTNSRDFVSASMVFDRMPLR-----DVVSWNKMINGYAKSNNMVKASFF 94
Query: 69 FDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACV 128
F+ MP+RD SW M+ GY+ + + I +F +M G F +LK C
Sbjct: 95 FNMMPVRDVVSWNSMLSGYLQNGETLKSIEVFVDM-----GRAGTEFDGRTFAIILKVCS 149
Query: 129 CTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTA 188
C + LG Q+HG++ ++G ++ +L++ Y K + ++ VF + N+V W+A
Sbjct: 150 CLEDTSLGMQIHGVVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIPEKNSVSWSA 209
Query: 189 KIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKI 248
I + FKEM + + ++SVL++C + + G Q+HA+ +K
Sbjct: 210 IIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAAL-SELRLGGQLHAHALKS 268
Query: 249 GLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKF 308
+D V+ +DMY KC ++DA+ +F+ + N S+NAM+ GY + +A
Sbjct: 269 DFAADGIVRTATLDMYAKCDNMQDAQILFDK-SENLNRQSYNAMITGYSQEEHGFKALLL 327
Query: 309 LYLMKASGIQIQESLINDLRIACS 332
+ + +SG+ E ++ + AC+
Sbjct: 328 FHRLMSSGLGFDEISLSGVFRACA 351
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 91/309 (29%), Positives = 145/309 (46%), Gaps = 36/309 (11%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N + M+ C L A ++FDEM RD SW +I + E + LF M++ +
Sbjct: 379 NAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIE 438
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
F + VLKAC ++ G ++H + K G + N S+ SLI+ Y K +E
Sbjct: 439 PDEFTFGS-----VLKACTGG-SLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIE 492
Query: 170 DADFVFSQL--------------KRHNT------VVWTAKI---VNNCREGHFHQVFNDF 206
+A+ + S+ K HN V W + I V + +F
Sbjct: 493 EAEKIHSRFFQRTNVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRM 552
Query: 207 KEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGK 266
EMG I + +T+++VL C + G G+Q+HA ++K L+SD Y+ LVDMY K
Sbjct: 553 MEMG---ITPDKFTYATVLDTCANLASAG-LGKQIHAQVIKKELQSDVYISSTLVDMYSK 608
Query: 267 CRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQE-SLIN 325
C L D+ +FE + +++ +WNAM+ GY +G EA + M I+ + I+
Sbjct: 609 CGDLHDSRLMFEKSL-RRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFIS 667
Query: 326 DLRIACSSI 334
LR AC+ +
Sbjct: 668 ILR-ACAHM 675
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 115/237 (48%), Gaps = 9/237 (3%)
Query: 102 EMMKRKKGHMLLV---FPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
E+ K+ HM+L +++ C+L+ + + V F R++ +
Sbjct: 23 ELGKQAHAHMILSGFRPTTFVLNCLLQVYTNSRDFVSASMV----FDRMPLRDVVSWNKM 78
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
IN Y K + A F F+ + + V W + + + G + F +MGR + +
Sbjct: 79 INGYAKSNNMVKASFFFNMMPVRDVVSWNSMLSGYLQNGETLKSIEVFVDMGRAGTEFDG 138
Query: 219 YTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE 278
TF+ +LK C ++D + G Q+H +V++G ++D L+DMY K + ++ RVF+
Sbjct: 139 RTFAIILKVCSCLEDT-SLGMQIHGVVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQ 197
Query: 279 LIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
I +K N SW+A++ G ++N L A KF M+ + +S+ + +C+++S
Sbjct: 198 GIPEK-NSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALS 253
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 72/159 (45%), Gaps = 7/159 (4%)
Query: 79 SWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQ 138
SW +I GYV ++ LF MM+ M + + VL C + LGKQ
Sbjct: 528 SWNSIISGYVMKEQSEDAQMLFTRMME-----MGITPDKFTYATVLDTCANLASAGLGKQ 582
Query: 139 VHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGH 198
+H + K ++ ++ +L++ Y K L D+ +F + R + V W A I G
Sbjct: 583 IHAQVIKKELQSDVYISSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGK 642
Query: 199 FHQVFNDFKEMGRERIKKNSYTFSSVLKACG--GVDDDG 235
+ F+ M E IK N TF S+L+AC G+ D G
Sbjct: 643 GEEAIQLFERMILENIKPNHVTFISILRACAHMGLIDKG 681
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 57/127 (44%), Gaps = 12/127 (9%)
Query: 6 LPITTD--MYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLD 63
+ IT D Y ++ C SAG + ++ + ++ + + L+ M+ CG L
Sbjct: 555 MGITPDKFTYATVLDTCA-NLASAGLGKQIHAQVIKKELQSDVYISSTLVDMYSKCGDLH 613
Query: 64 TARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR--KKGHMLLVFPAWIIV 121
+R +F++ RDF +W MI GY +E I LF M+ K H+ +
Sbjct: 614 DSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHV-------TFI 666
Query: 122 CVLKACV 128
+L+AC
Sbjct: 667 SILRACA 673
>gi|297800922|ref|XP_002868345.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297314181|gb|EFH44604.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 1047
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 80/274 (29%), Positives = 142/274 (51%), Gaps = 16/274 (5%)
Query: 29 AFELLNHIRKRV---NIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIV 85
AF+++ I R+ + + + N L+ ++ G +D AR++FD + L+D +SW MI
Sbjct: 185 AFDVVEQIHARIIYQGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKDHSSWVAMIS 244
Query: 86 GYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLF 144
G E I LF +M ++L + P + VL AC ++E+G+Q+HGL+
Sbjct: 245 GLSKNECEVEAIRLFCDM------YVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVL 298
Query: 145 KLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFN 204
KLG S + + +L++ Y L A+ +FS + + + V + I + G+ +
Sbjct: 299 KLGFSSDTYVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAME 358
Query: 205 DFKEMGRERIKKNSYTFSSVLKACGGVDDDGN--CGRQMHANIVKIGLESDEYVQCGLVD 262
FK M + ++ +S T +S++ AC DG G+Q+HA K+G S++ ++ L++
Sbjct: 359 LFKRMQLDGLEPDSNTLASLVVACSS---DGTLFSGQQLHAYTTKLGFASNDKIEGALLN 415
Query: 263 MYGKCRLLRDAERVFELIVDKKNIASWNAMLVGY 296
+Y KC + A F L + +N+ WN MLV Y
Sbjct: 416 LYAKCSDIETALNYF-LETEVENVVLWNVMLVAY 448
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 80/283 (28%), Positives = 130/283 (45%), Gaps = 7/283 (2%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ G+LDTA + +D SW MI GY + +T F +M+ R
Sbjct: 514 LIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRG---- 569
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+ + + AC ++ G+Q+H G S ++ +L+ Y K +E+A
Sbjct: 570 -IRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSKCGNIEEA 628
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
F Q + + + W A + + G+ + F M RE I N++TF S +KA
Sbjct: 629 YLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFARMNREGIDSNNFTFGSAVKAASET 688
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
+ G+Q+HA I K G +S+ V ++ MY KC + DA++ F L + KN SWNA
Sbjct: 689 ANMKQ-GKQVHAVITKTGYDSETEVCNAIISMYAKCGSISDAKKQF-LELSMKNEVSWNA 746
Query: 292 MLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
M+ Y ++G EA M S ++ + + ACS I
Sbjct: 747 MINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHI 789
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 78/289 (26%), Positives = 128/289 (44%), Gaps = 7/289 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ ++ G L +A +F M RD ++ +I G ++ + LF M
Sbjct: 310 NALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQLDG-- 367
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
L + + ++ AC + G+Q+H KLG + N + G+L+N Y K +E
Sbjct: 368 ---LEPDSNTLASLVVACSSDGTLFSGQQLHAYTTKLGFASNDKIEGALLNLYAKCSDIE 424
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A F + + N V+W +V F F++M E I N YT+ S+LK C
Sbjct: 425 TALNYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCI 484
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ D G Q+H+ I+K + + YV L+DMY K L A + + K++ SW
Sbjct: 485 RLGD-LELGEQIHSQIIKTSFQLNAYVCSVLIDMYAKLGKLDTAWDIL-IRFAGKDVVSW 542
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASK 338
M+ GY + +A M GI+ E + + AC+ + A K
Sbjct: 543 TTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALK 591
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 119/266 (44%), Gaps = 7/266 (2%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL ++ C ++TA F E + + W VM+V Y + D + +F +M +
Sbjct: 413 LLNLYAKCSDIETALNYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPN 472
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+P+ +LK C+ ++ELG+Q+H + K N + LI+ Y K L+ A
Sbjct: 473 QYTYPS-----ILKTCIRLGDLELGEQIHSQIIKTSFQLNAYVCSVLIDMYAKLGKLDTA 527
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
+ + + V WT I + + F++M I+ + ++ + AC G+
Sbjct: 528 WDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGL 587
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
G+Q+HA G SD Q LV +Y KC + +A FE NIA WNA
Sbjct: 588 QALKE-GQQIHAQACVSGFSSDLPFQNALVTLYSKCGNIEEAYLAFEQTEAGDNIA-WNA 645
Query: 292 MLVGYIRNGLYVEATKFLYLMKASGI 317
++ G+ ++G EA + M GI
Sbjct: 646 LVSGFQQSGNNEEALRVFARMNREGI 671
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 78/288 (27%), Positives = 131/288 (45%), Gaps = 16/288 (5%)
Query: 51 RLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGH 110
+LL ++ G LD A ++FDEMP R +W MI + + LF M+
Sbjct: 108 KLLDFYLFKGDLDGALKVFDEMPERTIFTWNKMIKELASRSLSGKVFCLFGRMVNENVTP 167
Query: 111 MLLVFPAWIIVCVLKACV-CTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
F VL+AC ++ ++ +Q+H + G ++ + LI+ Y + ++
Sbjct: 168 NEGTFSG-----VLEACRGGSVAFDVVEQIHARIIYQGLGKSTIVCNPLIDLYSRNGFVD 222
Query: 170 DADFVFSQLKRHNTVVWTAKIV----NNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
A VF L + W A I N C E ++F D +G I Y FSSVL
Sbjct: 223 RARRVFDGLYLKDHSSWVAMISGLSKNEC-EVEAIRLFCDMYVLG---IMPTPYAFSSVL 278
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
AC + + G Q+H ++K+G SD YV LV +Y L AE +F + +++
Sbjct: 279 SACKKI-ESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGSLISAEHIFSNM-SQRD 336
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSS 333
++N ++ G + G +A + M+ G++ + + L +ACSS
Sbjct: 337 AVTYNTLINGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVACSS 384
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 64/251 (25%), Positives = 111/251 (44%), Gaps = 11/251 (4%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L F N L+ ++ CG ++ A F++ D +W ++ G+ + +E + +FA M +
Sbjct: 609 LPFQNALVTLYSKCGNIEEAYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFARMNR 668
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
F + +KA T NM+ GKQVH ++ K G + ++I+ Y K
Sbjct: 669 EGIDSNNFTFGS-----AVKAASETANMKQGKQVHAVITKTGYDSETEVCNAIISMYAKC 723
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
+ DA F +L N V W A I + G + + F +M ++ N T VL
Sbjct: 724 GSISDAKKQFLELSMKNEVSWNAMINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVL 783
Query: 226 KACG--GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLL-RDAERVFELIVD 282
AC G+ D G + + + + YV C +VDM + LL R + + E+ ++
Sbjct: 784 SACSHIGLVDKGIEYFESMNTEYGLAPKPEHYV-C-VVDMLTRAGLLSRAKDFILEMPIE 841
Query: 283 KKNIASWNAML 293
+ W +L
Sbjct: 842 PDALV-WRTLL 851
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 101/218 (46%), Gaps = 2/218 (0%)
Query: 123 VLKACVCTM-NMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH 181
+L+ C+ T +++ G+++H + KLG N L+ L++FY L+ A VF ++
Sbjct: 73 LLEGCLKTNGSLDEGRKLHSQILKLGFDNNACLSEKLLDFYLFKGDLDGALKVFDEMPER 132
Query: 182 NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQM 241
W I +VF F M E + N TFS VL+AC G + Q+
Sbjct: 133 TIFTWNKMIKELASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLEACRGGSVAFDVVEQI 192
Query: 242 HANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGL 301
HA I+ GL V L+D+Y + + A RVF+ + K + +SW AM+ G +N
Sbjct: 193 HARIIYQGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKDH-SSWVAMISGLSKNEC 251
Query: 302 YVEATKFLYLMKASGIQIQESLINDLRIACSSISASKI 339
VEA + M GI + + AC I + +I
Sbjct: 252 EVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEI 289
>gi|356509996|ref|XP_003523727.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15130-like [Glycine max]
Length = 586
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 82/289 (28%), Positives = 148/289 (51%), Gaps = 16/289 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N ++ M+ CG + A ++F+ +P+R+ SW MI GY + + +E + LF EM R+KG
Sbjct: 43 NSMIDMYSKCGMVGEAARVFNTLPVRNVISWNAMIAGYTNERNGEEALNLFREM--REKG 100
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSS--RNISLTGSLINFYGKFRC 167
V + LKAC C G Q+H L + G ++ G+L++ Y K R
Sbjct: 101 E---VPDGYTYSSSLKACSCADAAGEGMQIHAALIRHGFPYLAQSAVAGALVDLYVKCRR 157
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
+ +A VF +++ + + W+ I+ +E + + + F+E+ R + + + SS++
Sbjct: 158 MAEARKVFDRIEEKSVMSWSTLILGYAQEDNLKEAMDLFRELRESRHRMDGFVLSSII-- 215
Query: 228 CGGVDDDG---NCGRQMHANIVKIGLESDEY-VQCGLVDMYGKCRLLRDAERVFELIVDK 283
GV D G+QMHA +K+ E V ++DMY KC L +A+ +F +++
Sbjct: 216 --GVFADFALLEQGKQMHAYTIKVPYGLLEMSVANSVLDMYMKCGLTVEADALFREMLE- 272
Query: 284 KNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+N+ SW M+ GY ++G+ +A + M+ +GI+ + ACS
Sbjct: 273 RNVVSWTVMITGYGKHGIGNKAVELFNEMQENGIEPDSVTYLAVLSACS 321
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 102/195 (52%), Gaps = 4/195 (2%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
+L C ++ GKQVHG++ KLG + S+I+ Y K + +A VF+ L N
Sbjct: 10 ILNKCSKRRLLDQGKQVHGVVEKLGFDVIXVVGNSMIDMYSKCGMVGEAARVFNTLPVRN 69
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
+ W A I E + + N F+EM + + YT+SS LKAC D G G Q+H
Sbjct: 70 VISWNAMIAGYTNERNGEEALNLFREMREKGEVPDGYTYSSSLKACSCADAAGE-GMQIH 128
Query: 243 ANIVKIGLE--SDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
A +++ G + V LVD+Y KCR + +A +VF+ I ++K++ SW+ +++GY +
Sbjct: 129 AALIRHGFPYLAQSAVAGALVDLYVKCRRMAEARKVFDRI-EEKSVMSWSTLILGYAQED 187
Query: 301 LYVEATKFLYLMKAS 315
EA ++ S
Sbjct: 188 NLKEAMDLFRELRES 202
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 120/245 (48%), Gaps = 10/245 (4%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ ++V C ++ AR++FD + + SW+ +I+GY + +E + LF E+ R+ H
Sbjct: 148 LVDLYVKCRRMAEARKVFDRIEEKSVMSWSTLILGYAQEDNLKEAMDLFREL--RESRHR 205
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSR-NISLTGSLINFYGKFRCLED 170
+ F I+ V +E GKQ+H K+ +S+ S+++ Y K +
Sbjct: 206 MDGFVLSSIIGVFADFAL---LEQGKQMHAYTIKVPYGLLEMSVANSVLDMYMKCGLTVE 262
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG- 229
AD +F ++ N V WT I + G ++ F EM I+ +S T+ +VL AC
Sbjct: 263 ADALFREMLERNVVSWTVMITGYGKHGIGNKAVELFNEMQENGIEPDSVTYLAVLSACSH 322
Query: 230 -GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
G+ +G + + KI + + Y C +VD+ G+ L++A+ + E + K N+
Sbjct: 323 SGLIKEGKKYFSILCSNQKIKPKVEHYA-C-MVDLLGRGGRLKEAKNLIEKMPLKPNVGI 380
Query: 289 WNAML 293
W +L
Sbjct: 381 WQTLL 385
>gi|226492710|ref|NP_001145953.1| uncharacterized protein LOC100279479 [Zea mays]
gi|219885099|gb|ACL52924.1| unknown [Zea mays]
Length = 530
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 80/281 (28%), Positives = 131/281 (46%), Gaps = 13/281 (4%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+ CG + AR +FD+MP RD SW +I GY E I L +M++ +
Sbjct: 1 MYCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFT 60
Query: 115 FPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFV 174
F +LKA +G+Q+H L K ++ + +L++ Y + ++ A V
Sbjct: 61 F-----TSLLKATGACGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMV 115
Query: 175 FSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA---CGGV 231
F +L N V W A I R+ F EM R +T+SS+ A G +
Sbjct: 116 FDRLVSKNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGAL 175
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
+ GR +HA+++K G + +V ++ MY K + DA +VF+ + DK+++ +WN
Sbjct: 176 EQ----GRWVHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRM-DKRDLVTWNT 230
Query: 292 MLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
ML + GL EA ++ GIQ+ + + ACS
Sbjct: 231 MLTALAQYGLGKEAVAHFEEIRKCGIQLNQITFLSVLTACS 271
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 121/266 (45%), Gaps = 12/266 (4%)
Query: 31 ELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDV 90
E ++ + + N + + LL M+ C Q+D A +FD + ++ SW +I G+
Sbjct: 78 EQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVSWNALIAGFARK 137
Query: 91 ADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSR 150
AD + + FAEM + G + + + A +E G+ VH L K G
Sbjct: 138 ADGETTLMKFAEMQRNGFGATHFTYSS-----MFSAFARIGALEQGRWVHAHLIKSGQKL 192
Query: 151 NISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMG 210
+ +++ Y K + DA VF ++ + + V W + + G + F+E+
Sbjct: 193 TAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGLGKEAVAHFEEIR 252
Query: 211 RERIKKNSYTFSSVLKAC--GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCR 268
+ I+ N TF SVL AC GG+ +G M + + E D YV VD+ G+
Sbjct: 253 KCGIQLNQITFLSVLTACSHGGLVKEGKHYFDMMKD-YNVQPEIDHYVS--FVDLLGRAG 309
Query: 269 LLRDAE-RVFELIVDKKNIASWNAML 293
LL++A VF++ ++ A W A+L
Sbjct: 310 LLKEALIFVFKMPME-PTAAVWGALL 334
Score = 45.1 bits (105), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 63/154 (40%), Gaps = 7/154 (4%)
Query: 43 KPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAE 102
K T N +L M+ G + AR++FD M RD +W M+ +E + F E
Sbjct: 191 KLTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGLGKEAVAHFEE 250
Query: 103 MMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFY 162
+ RK G L + VL AC ++ GK ++ I S ++
Sbjct: 251 I--RKCGIQLNQI---TFLSVLTACSHGGLVKEGKHYFDMMKDYNVQPEIDHYVSFVDLL 305
Query: 163 GKFRCLEDA-DFVFSQLKRHNTVVWTAKIVNNCR 195
G+ L++A FVF VW A ++ CR
Sbjct: 306 GRAGLLKEALIFVFKMPMEPTAAVWGA-LLGACR 338
>gi|302790281|ref|XP_002976908.1| hypothetical protein SELMODRAFT_106129 [Selaginella moellendorffii]
gi|300155386|gb|EFJ22018.1| hypothetical protein SELMODRAFT_106129 [Selaginella moellendorffii]
Length = 704
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 86/311 (27%), Positives = 147/311 (47%), Gaps = 12/311 (3%)
Query: 9 TTDMYTCLIKECTFQKDSAGAFELLNHIRKR-VNIKPTLLFLNRLLLMHVSCGQLDTARQ 67
T Y L++ KD + + I R ++ PT+ + ++ M+V CG +TA+
Sbjct: 22 ATAAYIHLLRAYANSKDLQAGILIHDRIVSRGLDRDPTIA--DHVVYMYVKCGSFETAKS 79
Query: 68 LFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWII-VCVLKA 126
+F MP SW +I G+ + +E I F ++ + V P I V L A
Sbjct: 80 VFQRMPDPGILSWNRIIAGHAQRHELEEAIATFRRLLLQG------VTPGRITYVAALGA 133
Query: 127 CVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVW 186
C + + +GKQ+H + G ++ ++ +LI+ Y L A VF +K+ + V W
Sbjct: 134 CCGSRFLPVGKQIHSQIVAAGWDSSLIVSTALIDMYAACGSLRGAIRVFQGMKKRDVVAW 193
Query: 187 TAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIV 246
TA I + GH + F ++ M E TF ++L A + D + GR +H +I
Sbjct: 194 TAIIAAFAQYGHLEKAFLTYRGMLLEGFLPVLVTFLALLNALAE-ERDWDRGRWIHRHIT 252
Query: 247 KIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEAT 306
++ LES+ + L+ M+GKC L+ A RVF I + ++ +NA+L + NG + A
Sbjct: 253 EMKLESELSMAAALITMFGKCGDLKKARRVFRRI-HQPDLEVYNALLAAHTENGEFWNAL 311
Query: 307 KFLYLMKASGI 317
M+ G+
Sbjct: 312 LLFRRMQEDGV 322
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 82/291 (28%), Positives = 142/291 (48%), Gaps = 10/291 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M CG L AR++F + D + ++ + + ++ + LF M +
Sbjct: 266 LITMFGKCGDLKKARRVFRRIHQPDLEVYNALLAAHTENGEFWNALLLFRRMQEDG---- 321
Query: 112 LLVFPAWIIVCV-LKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
V P V V L AC+ +++E GK +H + ++I + +LI Y K LED
Sbjct: 322 --VAPDRETVLVALGACIRPVDLEHGKGIHVSVINHDLEKDIDVANALIYMYSKCGSLED 379
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
A+++F +++R + V W + + G + F++M E I S L+ACG
Sbjct: 380 AEWMFQRVERPSMVSWRTLLAAYVKHGRNEEALISFRKMLLEGISPGRGACVSALRACGS 439
Query: 231 VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWN 290
+ G GR +H + ++GLES V C +V+MYGKC+ L DA VFE I ++ N +SWN
Sbjct: 440 LRLPGQ-GRLIHLIVRELGLESHNRVVCTVVEMYGKCKCLEDARSVFEKI-EQPNPSSWN 497
Query: 291 AMLVGYIRNGLYVEATKFLY-LMKASGIQIQESLINDLRIACSSISASKIN 340
+++ Y+ G EA L+ M G++ ++ + AC + ++
Sbjct: 498 SIVAAYLDCGCMEEAFGQLFRRMLLDGVKPDKTTFTLVLSACMEAQEAPVS 548
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 79/303 (26%), Positives = 135/303 (44%), Gaps = 26/303 (8%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ CG L+ A +F + SW ++ YV +E + F +M+
Sbjct: 365 NALIYMYSKCGSLEDAEWMFQRVERPSMVSWRTLLAAYVKHGRNEEALISFRKMLLEG-- 422
Query: 110 HMLLVFPA-WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+ P V L+AC G+ +H ++ +LG + + +++ YGK +CL
Sbjct: 423 ----ISPGRGACVSALRACGSLRLPGQGRLIHLIVRELGLESHNRVVCTVVEMYGKCKCL 478
Query: 169 EDADFVFSQLKRHNTVVWTAKIVN----NCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
EDA VF ++++ N W + + C E F Q+F + M + +K + TF+ V
Sbjct: 479 EDARSVFEKIEQPNPSSWNSIVAAYLDCGCMEEAFGQLF---RRMLLDGVKPDKTTFTLV 535
Query: 225 LKACGGVDDDGNCGRQ---MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIV 281
L AC + Q +H+ I++ LE+D + L+ YG+C+ L++A VF
Sbjct: 536 LSACMEAQEAPVSADQVAFIHSFIIECELETDATIAVFLLSAYGRCKALQEAYAVF---- 591
Query: 282 DKKN----IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISAS 337
KN +A WNAM+ + NG+ M G+ S + A S+ AS
Sbjct: 592 -SKNHHLGVAVWNAMISAFAENGVPKNGFLLFQRMAREGVMPNRSTFAGVLNAIGSVGAS 650
Query: 338 KIN 340
+
Sbjct: 651 GLE 653
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 72/291 (24%), Positives = 135/291 (46%), Gaps = 9/291 (3%)
Query: 45 TLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMM 104
+L+ L+ M+ +CG L A ++F M RD +W +I + ++ + M+
Sbjct: 158 SLIVSTALIDMYAACGSLRGAIRVFQGMKKRDVVAWTAIIAAFAQYGHLEKAFLTYRGML 217
Query: 105 KRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
+L+ F + +L A + + G+ +H + ++ +S+ +LI +GK
Sbjct: 218 LEGFLPVLVTF-----LALLNALAEERDWDRGRWIHRHITEMKLESELSMAAALITMFGK 272
Query: 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
L+ A VF ++ + + V+ A + + G F F+ M + + + T
Sbjct: 273 CGDLKKARRVFRRIHQPDLEVYNALLAAHTENGEFWNALLLFRRMQEDGVAPDRETVLVA 332
Query: 225 LKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
L AC D + G+ +H +++ LE D V L+ MY KC L DAE +F+ V++
Sbjct: 333 LGACIRPVDLEH-GKGIHVSVINHDLEKDIDVANALIYMYSKCGSLEDAEWMFQR-VERP 390
Query: 285 NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQI-QESLINDLRIACSSI 334
++ SW +L Y+++G EA M GI + + ++ LR AC S+
Sbjct: 391 SMVSWRTLLAAYVKHGRNEEALISFRKMLLEGISPGRGACVSALR-ACGSL 440
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 102/221 (46%), Gaps = 15/221 (6%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLL- 113
M+ C L+ AR +F+++ + +SW ++ Y+D +E F ++ +R MLL
Sbjct: 471 MYGKCKCLEDARSVFEKIEQPNPSSWNSIVAAYLDCGCMEEA---FGQLFRR----MLLD 523
Query: 114 -VFP-AWIIVCVLKACVCTMNMELGKQ----VHGLLFKLGSSRNISLTGSLINFYGKFRC 167
V P VL AC+ + +H + + + ++ L++ YG+ +
Sbjct: 524 GVKPDKTTFTLVLSACMEAQEAPVSADQVAFIHSFIIECELETDATIAVFLLSAYGRCKA 583
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
L++A VFS+ VW A I G F F+ M RE + N TF+ VL A
Sbjct: 584 LQEAYAVFSKNHHLGVAVWNAMISAFAENGVPKNGFLLFQRMAREGVMPNRSTFAGVLNA 643
Query: 228 CGGVDDDG-NCGRQMHANIVKIGLESDEYVQCGLVDMYGKC 267
G V G G+ +H+ V++G+E D V LV+MY C
Sbjct: 644 IGSVGASGLEQGKIVHSEAVQLGIELDPIVATALVNMYHGC 684
>gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 672
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 99/342 (28%), Positives = 160/342 (46%), Gaps = 16/342 (4%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLL-MHVSC 59
M L L + C IK C+ D ++ H + V + +F+ L+ M+ C
Sbjct: 77 MRKLSLHPNRSTFPCTIKSCSSLYDLCAGKQI--HQQAFVFGYGSDIFVASALIDMYSKC 134
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGH------MLL 113
G L+ AR+LFDE+P R+ SW MI GYV +E + LF E + + + +
Sbjct: 135 GYLNDARKLFDEIPERNVVSWTSMISGYVQNERAREAVFLFKEFLLVDETDYDEIVGVGV 194
Query: 114 VFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADF 173
+ ++ CV+ AC + + VHGL K G +++ +L++ Y K + +
Sbjct: 195 GVDSVLLGCVISACARVCVKSVTECVHGLAVKKGFEGCLAVGNTLMDAYAKCGEISVSRK 254
Query: 174 VFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEM-GRERIKKNSYTFSSVLKACG--G 230
VF ++ + W + I + G + F+ F +M R ++ N+ T S+VL AC G
Sbjct: 255 VFDGMEETDVCSWNSLIAVYAQNGLSVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSG 314
Query: 231 VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWN 290
G C +H +VK+ LE + V +VDMY KC + A + F+ + +KN+ SW
Sbjct: 315 ALQIGKC---IHDQVVKMELEDNLVVGTSIVDMYCKCGRVEMARKAFDRL-KRKNVKSWT 370
Query: 291 AMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
M+ GY +G EA K Y M GI+ + ACS
Sbjct: 371 VMVAGYGMHGHGKEAMKVFYEMIRCGIKPNYITFVSVLAACS 412
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 73/257 (28%), Positives = 119/257 (46%), Gaps = 30/257 (11%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ + CG++ +R++FD M D SW +I Y E +LF++M+KR +
Sbjct: 237 NTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYAQNGLSVEAFSLFSDMVKRGE- 295
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ + A + VL AC + +++GK +H + K+ N+ + S+++ Y K +E
Sbjct: 296 ---VRYNAVTLSAVLLACAHSGALQIGKCIHDQVVKMELEDNLVVGTSIVDMYCKCGRVE 352
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A F +LKR N WT + GH + F EM R IK N TF SVL AC
Sbjct: 353 MARKAFDRLKRKNVKSWTVMVAGYGMHGHGKEAMKVFYEMIRCGIKPNYITFVSVLAACS 412
Query: 230 GVDDDGNCGRQMHANIVKIGL--------ESD-----EYVQCGLVDMYGKCRLLRDAERV 276
HA ++K G E D E+ C +VD+ G+ L++A +
Sbjct: 413 ------------HAGLLKEGWHWFNKMKCEFDVEPGIEHYSC-MVDLLGRAGYLKEAYGL 459
Query: 277 FELIVDKKNIASWNAML 293
+ + K + W ++L
Sbjct: 460 IQEMKVKPDFIVWGSLL 476
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/278 (26%), Positives = 124/278 (44%), Gaps = 27/278 (9%)
Query: 79 SWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQ 138
SW +I + D + + F+ M K FP C +K+C ++ GKQ
Sbjct: 53 SWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFP-----CTIKSCSSLYDLCAGKQ 107
Query: 139 VHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKI---VNNCR 195
+H F G +I + +LI+ Y K L DA +F ++ N V WT+ I V N R
Sbjct: 108 IHQQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSMISGYVQNER 167
Query: 196 EGHFHQVF--------NDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQ----MHA 243
+F D+ E+ + +S V+ AC V C + +H
Sbjct: 168 AREAVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARV-----CVKSVTECVHG 222
Query: 244 NIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYV 303
VK G E V L+D Y KC + + +VF+ + ++ ++ SWN+++ Y +NGL V
Sbjct: 223 LAVKKGFEGCLAVGNTLMDAYAKCGEISVSRKVFDGM-EETDVCSWNSLIAVYAQNGLSV 281
Query: 304 EA-TKFLYLMKASGIQIQESLINDLRIACSSISASKIN 340
EA + F ++K ++ ++ + +AC+ A +I
Sbjct: 282 EAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQIG 319
>gi|297842209|ref|XP_002888986.1| hypothetical protein ARALYDRAFT_476599 [Arabidopsis lyrata subsp.
lyrata]
gi|297334827|gb|EFH65245.1| hypothetical protein ARALYDRAFT_476599 [Arabidopsis lyrata subsp.
lyrata]
Length = 717
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 81/283 (28%), Positives = 133/283 (46%), Gaps = 7/283 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+ L M+ CG L+ + LF E+P +D WA MI G+ + +E I LF+EM+
Sbjct: 311 SSLFTMYSKCGSLEESYSLFQEIPFKDNACWASMISGFNEYGYLREAIGLFSEMLDEGTS 370
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ VL C ++ K++HG + G R + L +L+N Y K L+
Sbjct: 371 P-----DESTLAAVLTVCSSLPSLPRSKEIHGYTLRAGIDRGMPLGSALVNTYSKCGSLK 425
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A V+ +L + V ++ I + G F F++M +SY SS+LKA
Sbjct: 426 LARKVYDRLPEMDPVSCSSLISGYSQHGLVQDGFLLFRDMVMSGFSMDSYAISSILKA-A 484
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ ++ G Q+HA I KIGL ++ V L+ MY K + D + F I + ++ +W
Sbjct: 485 VLSEESELGAQVHAYITKIGLCTEPSVGSSLLTMYSKFGSIEDCCKAFSQI-NGPDLIAW 543
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
A++ Y ++G EA + LMK G + + + ACS
Sbjct: 544 TALIASYAQHGKANEALQVYCLMKEKGFKPDKVTFVGVLSACS 586
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 71/259 (27%), Positives = 117/259 (45%), Gaps = 9/259 (3%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R I + + L+ + CG L AR+++D +P D S + +I GY Q+
Sbjct: 401 RAGIDRGMPLGSALVNTYSKCGSLKLARKVYDRLPEMDPVSCSSLISGYSQHGLVQDGFL 460
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
LF +M+ ++ I +LKA V + ELG QVH + K+G S+ SL
Sbjct: 461 LFRDMVMSG-----FSMDSYAISSILKAAVLSEESELGAQVHAYITKIGLCTEPSVGSSL 515
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
+ Y KF +ED FSQ+ + + WTA I + + G ++ + M + K +
Sbjct: 516 LTMYSKFGSIEDCCKAFSQINGPDLIAWTALIASYAQHGKANEALQVYCLMKEKGFKPDK 575
Query: 219 YTFSSVLKAC--GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERV 276
TF VL AC GG+ ++G +++ + G+E + +VD G+ LR+AE
Sbjct: 576 VTFVGVLSACSHGGLVEEGYF--HLNSMVKDYGIEPENRHYVCMVDALGRSGRLREAENF 633
Query: 277 FELIVDKKNIASWNAMLVG 295
K + W +L
Sbjct: 634 INTRPIKPDALVWGTLLAA 652
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 78/286 (27%), Positives = 124/286 (43%), Gaps = 17/286 (5%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
++ CG + AR++F + SW VM+ GY D + +F EM H +
Sbjct: 116 LYAKCGHMAEAREVFSRISNPSVVSWTVMLSGYTKSNDAFSALEIFREMR-----HSGVE 170
Query: 115 FPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFV 174
+ + V+ AC + QVH +FK G + S+ +LI+ K + ++ V
Sbjct: 171 INSCTVTSVISACGRPSMVCEASQVHAWVFKSGFYLDTSVAAALISMNSKSGDINLSERV 230
Query: 175 FSQL---KRHNTV-VWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
F L +R N V V N + G + F M +E + + ++ S+L
Sbjct: 231 FEDLDDIRRQNIVNVMVTSFSQNKKPG---KAIRLFTRMLQEGLNPDEFSVCSLLS---- 283
Query: 231 VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWN 290
V D N G+Q+H+ +K GL D V L MY KC L ++ +F+ I K N A W
Sbjct: 284 VLDCLNLGKQVHSYTLKSGLILDLTVGSSLFTMYSKCGSLEESYSLFQEIPFKDN-ACWA 342
Query: 291 AMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+M+ G+ G EA M G ES + + CSS+ +
Sbjct: 343 SMISGFNEYGYLREAIGLFSEMLDEGTSPDESTLAAVLTVCSSLPS 388
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 88/179 (49%), Gaps = 3/179 (1%)
Query: 157 SLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKK 216
SLI+ + K EDA VF N W I R ++ VF+ F EM K
Sbjct: 12 SLIDAFSKNLRFEDAYKVFRDTLSANVYCWNTIIAGALRNQNYGAVFDLFHEMCNGFQKP 71
Query: 217 NSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERV 276
+SYT+SSVL AC +++ G+ + A ++K G E D +V +VD+Y KC + +A V
Sbjct: 72 DSYTYSSVLAACASLEEL-RFGKVVQARVIKCGAE-DVFVCTSIVDLYAKCGHMAEAREV 129
Query: 277 FELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
F I + ++ SW ML GY ++ A + M+ SG++I + + AC S
Sbjct: 130 FSRISN-PSVVSWTVMLSGYTKSNDAFSALEIFREMRHSGVEINSCTVTSVISACGRPS 187
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 62/277 (22%), Positives = 125/277 (45%), Gaps = 11/277 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMP-LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGH 110
L+ M+ G ++ + ++F+++ +R N VM+ + + I LF M++
Sbjct: 214 LISMNSKSGDINLSERVFEDLDDIRRQNIVNVMVTSFSQNKKPGKAIRLFTRMLQEG--- 270
Query: 111 MLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
+ P VC L + + +N LGKQVH K G ++++ SL Y K LE+
Sbjct: 271 ---LNPDEFSVCSLLSVLDCLN--LGKQVHSYTLKSGLILDLTVGSSLFTMYSKCGSLEE 325
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
+ +F ++ + W + I G+ + F EM E + T ++VL C
Sbjct: 326 SYSLFQEIPFKDNACWASMISGFNEYGYLREAIGLFSEMLDEGTSPDESTLAAVLTVCSS 385
Query: 231 VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWN 290
+ +++H ++ G++ + LV+ Y KC L+ A +V++ + + + S +
Sbjct: 386 LPSLPR-SKEIHGYTLRAGIDRGMPLGSALVNTYSKCGSLKLARKVYDRLPEMDPV-SCS 443
Query: 291 AMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDL 327
+++ GY ++GL + M SG + I+ +
Sbjct: 444 SLISGYSQHGLVQDGFLLFRDMVMSGFSMDSYAISSI 480
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 69/276 (25%), Positives = 116/276 (42%), Gaps = 15/276 (5%)
Query: 61 QLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWII 120
+ + A ++F + + W +I G + +Y LF EM + ++
Sbjct: 22 RFEDAYKVFRDTLSANVYCWNTIIAGALRNQNYGAVFDLFHEMCNGFQKP-----DSYTY 76
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
VL AC + GK V + K G+ ++ + S+++ Y K + +A VFS++
Sbjct: 77 SSVLAACASLEELRFGKVVQARVIKCGA-EDVFVCTSIVDLYAKCGHMAEAREVFSRISN 135
Query: 181 HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC-GR 239
+ V WT + + F+EM ++ NS T +SV+ ACG C
Sbjct: 136 PSVVSWTVMLSGYTKSNDAFSALEIFREMRHSGVEINSCTVTSVISACG--RPSMVCEAS 193
Query: 240 QMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRN 299
Q+HA + K G D V L+ M K + +ERVFE + D + N M+ + +N
Sbjct: 194 QVHAWVFKSGFYLDTSVAAALISMNSKSGDINLSERVFEDLDDIRRQNIVNVMVTSFSQN 253
Query: 300 GLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
+A + M +QE L D CS +S
Sbjct: 254 KKPGKAIRLFTRM------LQEGLNPDEFSVCSLLS 283
>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
Length = 793
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 82/248 (33%), Positives = 123/248 (49%), Gaps = 13/248 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N ++ +V CG+++ AR LFD MP +D SW+ MI GY + E + LF EM
Sbjct: 359 NSMISGYVKCGEIEKARALFDSMPDKDNVSWSAMISGYAQQDRFTETLVLFQEMQIEGTK 418
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
I+V V+ AC ++ GK +H + K G NI L +LIN Y K C+E
Sbjct: 419 P-----DETILVSVISACTHLAALDQGKWIHAYIRKNGLKINIILGTTLINMYMKLGCVE 473
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
DA VF L+ W A I+ G + F EM + N TF +VL AC
Sbjct: 474 DALEVFKGLEEKGVSTWNALILGLAMNGLVDKSLKTFSEMKEHGVTPNEITFVAVLGACR 533
Query: 230 --GVDDDGNCGRQMHANIV--KIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
G+ D+G+ R ++ I KIG Y C +VD+ G+ +L++AE + E + +
Sbjct: 534 HMGLVDEGH--RHFNSMIQEHKIGPNIKHY-GC-MVDLLGRAGMLKEAEELIESMPMAPD 589
Query: 286 IASWNAML 293
+++W A+L
Sbjct: 590 VSTWGALL 597
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 82/306 (26%), Positives = 142/306 (46%), Gaps = 44/306 (14%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N ++++ G ++ A +LF+EM +D SW+ +I Y Y+E + LF EM
Sbjct: 227 NSMIVLFGKKGNVEEACKLFNEMKQKDLVSWSALISCYEQNEMYEEALILFKEMNANG-- 284
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFY------- 162
++ +++ VL AC + + GK VHGL+ K+G ++L +LI+ Y
Sbjct: 285 ---IMVDEVVVLSVLSACSRLLVVITGKLVHGLVVKVGIETYVNLQNALIHMYSSCEEVV 341
Query: 163 ----------------------GKFRC--LEDADFVFSQLKRHNTVVWTAKIVNNCREGH 198
G +C +E A +F + + V W+A I ++
Sbjct: 342 TAQKLFSESCCLDQISWNSMISGYVKCGEIEKARALFDSMPDKDNVSWSAMISGYAQQDR 401
Query: 199 FHQVFNDFKEMGRERIKKNSYTFSSVLKAC---GGVDDDGNCGRQMHANIVKIGLESDEY 255
F + F+EM E K + SV+ AC +D G+ +HA I K GL+ +
Sbjct: 402 FTETLVLFQEMQIEGTKPDETILVSVISACTHLAALDQ----GKWIHAYIRKNGLKINII 457
Query: 256 VQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKAS 315
+ L++MY K + DA VF+ + ++K +++WNA+++G NGL ++ K MK
Sbjct: 458 LGTTLINMYMKLGCVEDALEVFKGL-EEKGVSTWNALILGLAMNGLVDKSLKTFSEMKEH 516
Query: 316 GIQIQE 321
G+ E
Sbjct: 517 GVTPNE 522
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 80/355 (22%), Positives = 141/355 (39%), Gaps = 78/355 (21%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
Y L + C+ + + +H+ K V + N L+ M+ CG L AR++FD
Sbjct: 129 YPILFQSCSIRLAEFDGKCIQDHVLK-VGFDSDVYIQNTLINMYAVCGNLSDARKVFDGS 187
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN 132
+ D SW M+ GYV V + +E ++ M
Sbjct: 188 SVLDMVSWNSMLAGYVLVGNVEEAKDVYDRM----------------------------- 218
Query: 133 MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192
RN+ + S+I +GK +E+A +F+++K+ + V W+A I
Sbjct: 219 ---------------PERNVIASNSMIVLFGKKGNVEEACKLFNEMKQKDLVSWSALISC 263
Query: 193 NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLES 252
+ + + FKEM I + SVL AC + G+ +H +VK+G+E+
Sbjct: 264 YEQNEMYEEALILFKEMNANGIMVDEVVVLSVLSACSRLLVVIT-GKLVHGLVVKVGIET 322
Query: 253 DEYVQCGLVDMYG-------------------------------KCRLLRDAERVFELIV 281
+Q L+ MY KC + A +F+ +
Sbjct: 323 YVNLQNALIHMYSSCEEVVTAQKLFSESCCLDQISWNSMISGYVKCGEIEKARALFDSMP 382
Query: 282 DKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
DK N+ SW+AM+ GY + + E M+ G + E+++ + AC+ ++A
Sbjct: 383 DKDNV-SWSAMISGYAQQDRFTETLVLFQEMQIEGTKPDETILVSVISACTHLAA 436
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 64/123 (52%), Gaps = 10/123 (8%)
Query: 206 FKEMGRERIKKNSYTFSSVLKACGG--VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDM 263
+K M + ++YT+ + ++C + DG C + +++K+G +SD Y+Q L++M
Sbjct: 114 YKFMLESNVAADNYTYPILFQSCSIRLAEFDGKC---IQDHVLKVGFDSDVYIQNTLINM 170
Query: 264 YGKCRLLRDAERVFE--LIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQE 321
Y C L DA +VF+ ++D + SWN+ML GY+ G EA M +
Sbjct: 171 YAVCGNLSDARKVFDGSSVLD---MVSWNSMLAGYVLVGNVEEAKDVYDRMPERNVIASN 227
Query: 322 SLI 324
S+I
Sbjct: 228 SMI 230
Score = 40.8 bits (94), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 63/321 (19%), Positives = 122/321 (38%), Gaps = 65/321 (20%)
Query: 32 LLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTAR--QLFDEMPLRDFNSWAVMIVGYVD 89
L H++K NIK L++++L +R + E+P + N + I +++
Sbjct: 29 LETHLQKCQNIKQFNQILSQMILSGFFKDSFAASRLLKFSTELPFININQ-SYQIFSHIE 87
Query: 90 VADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMEL-------------- 135
+ C T+ M+R + W+ +L++ V N
Sbjct: 88 NPNGFICNTMMKGYMQRNSPCKAI----WVYKFMLESNVAADNYTYPILFQSCSIRLAEF 143
Query: 136 -GKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNC 194
GK + + K+G ++ + +LIN Y L DA VF + V W + +
Sbjct: 144 DGKCIQDHVLKVGFDSDVYIQNTLINMYAVCGNLSDARKVFDGSSVLDMVSWNSMLAGYV 203
Query: 195 REGHFHQVFNDFKEMG-RERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESD 253
G+ + + + M R I NS
Sbjct: 204 LVGNVEEAKDVYDRMPERNVIASNS----------------------------------- 228
Query: 254 EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMK 313
++ ++GK + +A ++F + +K++ SW+A++ Y +N +Y EA M
Sbjct: 229 ------MIVLFGKKGNVEEACKLFNEM-KQKDLVSWSALISCYEQNEMYEEALILFKEMN 281
Query: 314 ASGIQIQESLINDLRIACSSI 334
A+GI + E ++ + ACS +
Sbjct: 282 ANGIMVDEVVVLSVLSACSRL 302
>gi|357115175|ref|XP_003559367.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21300-like [Brachypodium distachyon]
Length = 849
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 84/290 (28%), Positives = 140/290 (48%), Gaps = 9/290 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ G LD AR++FD M RD W VM+ GYV D + LF M R G
Sbjct: 188 LIKMYADAGLLDGAREVFDGMDERDCVLWNVMMDGYVKAGDVASAVGLFRVM--RASG-- 243
Query: 112 LLVFPAW-IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
P + + C L C ++ G Q+H L K G +++ +L++ Y K +CLE+
Sbjct: 244 --CDPNFATLACFLSVCAAEADLLSGVQLHTLAVKYGLEPEVAVANTLVSMYAKCQCLEE 301
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
A +F + R + V W I + G F +M + ++ +S T +S+L A
Sbjct: 302 AWRLFGLMPRDDLVTWNGMISGCVQNGLVDDALRLFCDMQKSGLQPDSVTLASLLPALTE 361
Query: 231 VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWN 290
++ G+++H IV+ D ++ LVD+Y KCR +R A+ VF+ ++ +
Sbjct: 362 LNGFKQ-GKEIHGYIVRNCAHVDVFLVSALVDIYFKCRDVRMAQNVFD-ATKSIDVVIGS 419
Query: 291 AMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKIN 340
M+ GY+ N + A K + A GI+ ++ AC+S++A +I
Sbjct: 420 TMISGYVLNRMSEAAVKMFRYLLALGIKPNAVMVASTLPACASMAAMRIG 469
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/288 (26%), Positives = 142/288 (49%), Gaps = 9/288 (3%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
+ ++ L+ ++ C + A+ +FD D + MI GYV + + +F ++
Sbjct: 384 VFLVSALVDIYFKCRDVRMAQNVFDATKSIDVVIGSTMISGYVLNRMSEAAVKMFRYLLA 443
Query: 106 RKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
L + P A ++ L AC M +G+++HG + K + +L++ Y K
Sbjct: 444 ------LGIKPNAVMVASTLPACASMAAMRIGQELHGYVLKNAYEGRCYVESALMDMYSK 497
Query: 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
L+ + ++FS++ + V W + I + + G + + F++M E +K N+ T SS+
Sbjct: 498 CGRLDLSHYMFSKMSAKDEVTWNSMISSFAQNGEPEEALDLFRQMIMEGVKYNNVTISSI 557
Query: 225 LKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
L AC G+ G+++H I+K + +D + + L+DMYGKC L A RVFE + +K
Sbjct: 558 LSACAGLPAI-YYGKEIHGIIIKGPIRADLFAESALIDMYGKCGNLELALRVFEHMPEKN 616
Query: 285 NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+ SWN+++ Y +GL E+ L M+ G + L AC+
Sbjct: 617 EV-SWNSIISAYGAHGLVKESVDLLCCMQEEGFKADHVTFLALISACA 663
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 79/324 (24%), Positives = 143/324 (44%), Gaps = 10/324 (3%)
Query: 14 TCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMP 73
C + C + D +L + + + ++P + N L+ M+ C L+ A +LF MP
Sbjct: 252 ACFLSVCAAEADLLSGVQL-HTLAVKYGLEPEVAVANTLVSMYAKCQCLEEAWRLFGLMP 310
Query: 74 LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN- 132
D +W MI G V + + LF +M K + P + + L + +N
Sbjct: 311 RDDLVTWNGMISGCVQNGLVDDALRLFCDMQKSG------LQPDSVTLASLLPALTELNG 364
Query: 133 MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192
+ GK++HG + + + ++ L +L++ Y K R + A VF K + V+ + I
Sbjct: 365 FKQGKEIHGYIVRNCAHVDVFLVSALVDIYFKCRDVRMAQNVFDATKSIDVVIGSTMISG 424
Query: 193 NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLES 252
F+ + IK N+ +S L AC + G+++H ++K E
Sbjct: 425 YVLNRMSEAAVKMFRYLLALGIKPNAVMVASTLPACASMAA-MRIGQELHGYVLKNAYEG 483
Query: 253 DEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLM 312
YV+ L+DMY KC L + +F + K + +WN+M+ + +NG EA M
Sbjct: 484 RCYVESALMDMYSKCGRLDLSHYMFSKMSAKDEV-TWNSMISSFAQNGEPEEALDLFRQM 542
Query: 313 KASGIQIQESLINDLRIACSSISA 336
G++ I+ + AC+ + A
Sbjct: 543 IMEGVKYNNVTISSILSACAGLPA 566
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 77/297 (25%), Positives = 127/297 (42%), Gaps = 18/297 (6%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFN---SWAVMIVGYVDVADYQECITLFAEMM-- 104
RL+ M+V + A +F +P W +I G+ ++ + + +M
Sbjct: 80 TRLVGMYVLARRFRDAVAVFSSLPRAAAAAALPWNWLIRGFTMAGHHRLAVLFYVKMWAH 139
Query: 105 ---KRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINF 161
R GH L V+K+C + LG+ VH LG R++ + +LI
Sbjct: 140 PSSPRPDGHTLPY--------VVKSCAALGALHLGRLVHRTTRALGLDRDMYVGSALIKM 191
Query: 162 YGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTF 221
Y L+ A VF + + V+W + + G F+ M N T
Sbjct: 192 YADAGLLDGAREVFDGMDERDCVLWNVMMDGYVKAGDVASAVGLFRVMRASGCDPNFATL 251
Query: 222 SSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIV 281
+ L C + D G Q+H VK GLE + V LV MY KC+ L +A R+F L+
Sbjct: 252 ACFLSVCAA-EADLLSGVQLHTLAVKYGLEPEVAVANTLVSMYAKCQCLEEAWRLFGLM- 309
Query: 282 DKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASK 338
+ ++ +WN M+ G ++NGL +A + M+ SG+Q + L A + ++ K
Sbjct: 310 PRDDLVTWNGMISGCVQNGLVDDALRLFCDMQKSGLQPDSVTLASLLPALTELNGFK 366
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 94/211 (44%), Gaps = 14/211 (6%)
Query: 117 AWIIVCVLKACVCTMNMELGKQVH------GLLFKLGSSRNISLTGSLINFYGKFRCLED 170
A+ ++ +L+ CV ++ LG ++H GLL G +L L+ Y R D
Sbjct: 36 AYRLLALLRGCVAPSHLPLGLRIHARAVTSGLLDAAGPG-PAALQTRLVGMYVLARRFRD 94
Query: 171 ADFVFSQLKR---HNTVVWTAKIVNNCREGHFHQVFNDFKEM--GRERIKKNSYTFSSVL 225
A VFS L R + W I GH + +M + + +T V+
Sbjct: 95 AVAVFSSLPRAAAAAALPWNWLIRGFTMAGHHRLAVLFYVKMWAHPSSPRPDGHTLPYVV 154
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
K+C + + GR +H +GL+ D YV L+ MY LL A VF+ + D+++
Sbjct: 155 KSCAALGAL-HLGRLVHRTTRALGLDRDMYVGSALIKMYADAGLLDGAREVFDGM-DERD 212
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASG 316
WN M+ GY++ G A +M+ASG
Sbjct: 213 CVLWNVMMDGYVKAGDVASAVGLFRVMRASG 243
>gi|87241511|gb|ABD33369.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 609
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/268 (29%), Positives = 127/268 (47%), Gaps = 6/268 (2%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
+N ++ M+ CG+ AR++FDE+ +D SW ++ GY + +E + +F + + +
Sbjct: 155 VNSMVTMYFRCGENGVARKVFDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRL-REES 213
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
G +V VL AC ++ELG+ V G + + G N + +LI+ Y K L
Sbjct: 214 G---FEPDEMSLVSVLGACGELGDLELGRWVEGFVVERGMKVNSYIGSALISMYSKCGEL 270
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+ +F + + + W A I + G + + F M + N T ++VL AC
Sbjct: 271 VSSRRIFDGMPSRDFITWNAAISAYAQNGMADEAISLFHSMKENGVDPNKVTLTAVLSAC 330
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
+ + G+QM GL+ D +V L+DMY KC L A+RVF + +KN AS
Sbjct: 331 ASI-GALDLGKQMDEYATHRGLQHDIFVATALIDMYAKCGSLESAQRVFN-DMPRKNDAS 388
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASG 316
WNAM+ +G EA M G
Sbjct: 389 WNAMISALASHGKAKEALSLFERMSDEG 416
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 105/231 (45%), Gaps = 30/231 (12%)
Query: 116 PAWIIVCVLKACVCTMNMELGKQVHGLLFKLGS--------SRNISL---TGSLINFYGK 164
P ++++ +LK C T ++ Q+H F + S S++ISL T S + F
Sbjct: 20 PIFLLLSLLKQCPSTKTLQ---QIH-TQFTIHSIHKPNHLLSQSISLKDFTYSTLIF--S 73
Query: 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
D+ F+ + R T W + + + +M I N++TF V
Sbjct: 74 HITPHPNDYAFNIMLRATTTTWH----------DYPLTLHLYHQMKTLNISPNNFTFPFV 123
Query: 225 LKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
AC +++ R H + K+GL++D + +V MY +C A +VF+ I + K
Sbjct: 124 FLACANLEEI-RMARLAHCEVFKLGLDNDHHTVNSMVTMYFRCGENGVARKVFDEITE-K 181
Query: 285 NIASWNAMLVGYIRNGLYVEATK-FLYLMKASGIQIQESLINDLRIACSSI 334
++ SWN++L GY + G EA + F L + SG + E + + AC +
Sbjct: 182 DLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVSVLGACGEL 232
>gi|195651407|gb|ACG45171.1| CRR4 [Zea mays]
Length = 601
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 80/284 (28%), Positives = 130/284 (45%), Gaps = 8/284 (2%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
+N L++ + G ++ AR+LFD MP + SW MI Y ++QE +TLF +M++
Sbjct: 147 MNCLIIGYSRSGDVEEARRLFDSMPRKTSASWNSMIACYAHGGEFQEALTLFDQMLREGA 206
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
A I V C T ++E G++ + + +N+ + +L+ Y K R +
Sbjct: 207 SPN-----AITITTVFSICAKTGDLETGRRAKAWVSE-EDLQNVIVHTALMEMYVKCRAI 260
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
++A F ++ R + V W+ I G H+ F+ M K N T VL AC
Sbjct: 261 DEARREFDRMPRRDVVAWSTMIAGYSHNGRPHESLELFERMKATNCKPNEVTLVGVLSAC 320
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
+ D G Q+ + I L Y+ L+DMY KC + A VF + ++K + +
Sbjct: 321 AQLGSD-ELGEQIGSYIESQTLPLTSYLGSALIDMYTKCGHVARARDVFHRM-EQKVVIA 378
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
WN+M+ G NG +A M G+Q E L AC+
Sbjct: 379 WNSMIRGLALNGFAEDAIALYGEMVGDGVQPNEITFLALLTACT 422
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 73/312 (23%), Positives = 128/312 (41%), Gaps = 47/312 (15%)
Query: 64 TARQLFDEMPLRDFNSWAVMIVGYVDVAD----YQECITLFAEMMKRKKGHMLLVFPAWI 119
AR LFD +P A + +V V +QE I + + +R P+
Sbjct: 30 AARHLFDAVP----RPTAALCCAFVSVLSKLSLHQELIEAVSSLHRRGGA-----IPSGC 80
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK--------------- 164
I VLK+C + G Q H G ++ + +L++FY K
Sbjct: 81 IPLVLKSCALSAASCQGTQTHCHALVRGMLGDVFVQTALVDFYAKNGNMDSAVMAFEEMP 140
Query: 165 ------FRCL----------EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKE 208
CL E+A +F + R + W + I G F + F +
Sbjct: 141 IKDPIPMNCLIIGYSRSGDVEEARRLFDSMPRKTSASWNSMIACYAHGGEFQEALTLFDQ 200
Query: 209 MGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCR 268
M RE N+ T ++V C D GR+ A + + L+ + V L++MY KCR
Sbjct: 201 MLREGASPNAITITTVFSICAKTGD-LETGRRAKAWVSEEDLQ-NVIVHTALMEMYVKCR 258
Query: 269 LLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLR 328
+ +A R F+ + ++++ +W+ M+ GY NG E+ + MKA+ + E + +
Sbjct: 259 AIDEARREFDRM-PRRDVVAWSTMIAGYSHNGRPHESLELFERMKATNCKPNEVTLVGVL 317
Query: 329 IACSSISASKIN 340
AC+ + + ++
Sbjct: 318 SACAQLGSDELG 329
>gi|357453021|ref|XP_003596787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355485835|gb|AES67038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 867
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 89/292 (30%), Positives = 141/292 (48%), Gaps = 16/292 (5%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMM--KR 106
N L+ ++ G L AR +FD+M +RD+ +W MI GYV E +F +M
Sbjct: 232 FNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEVFEIFNKMQLAGV 291
Query: 107 KKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166
K HM V+K+C + L K + K G + + + +L+ K +
Sbjct: 292 KPTHMTF-------ASVIKSCASLRELALVKLMQCKALKSGFTTDQIVITALMVALSKCK 344
Query: 167 CLEDADFVFSQLKR-HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
++DA +FS ++ N V WTA I + G Q N F +M RE +K N +T+S++L
Sbjct: 345 EMDDALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREGVKPNHFTYSAIL 404
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
V +MHA ++K E V L+D Y K DA +VFE I++ K+
Sbjct: 405 TVHYPV-----FVSEMHAEVIKTNYERSSSVGTALLDAYVKLGNTIDAVKVFE-IIEAKD 458
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISAS 337
+ +W+AML GY + G EA K + + GI+ E + + AC+S +A+
Sbjct: 459 LMAWSAMLAGYAQTGETEEAAKLFHQLIKEGIKPNEFTFSSVINACASPTAA 510
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 77/268 (28%), Positives = 129/268 (48%), Gaps = 8/268 (2%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M++ ++ R++FDEM R+ SW ++ GY Y LF +M
Sbjct: 134 LVDMYMKTENVNDGRRVFDEMGERNVVSWTSLLAGYSWNGLYGYVWELFCQMQYEG---- 189
Query: 112 LLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
V P + + V+ A V + +G QVH ++ K G I + SLI+ Y + L D
Sbjct: 190 --VLPNRYTVSTVIAALVNEGVVGIGLQVHAMVVKHGFEEAIPVFNSLISLYSRLGMLRD 247
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
A VF +++ + V W + I R G +VF F +M +K TF+SV+K+C
Sbjct: 248 ARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEVFEIFNKMQLAGVKPTHMTFASVIKSCAS 307
Query: 231 VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWN 290
+ + + M +K G +D+ V L+ KC+ + DA +F L+ + KN+ SW
Sbjct: 308 LRELA-LVKLMQCKALKSGFTTDQIVITALMVALSKCKEMDDALSLFSLMEEGKNVVSWT 366
Query: 291 AMLVGYIRNGLYVEATKFLYLMKASGIQ 318
AM+ G ++NG +A M+ G++
Sbjct: 367 AMISGCLQNGGNDQAVNLFSQMRREGVK 394
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 76/272 (27%), Positives = 131/272 (48%), Gaps = 9/272 (3%)
Query: 65 ARQLFDEMPLRD--FNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVC 122
A LFD++P R ++ Y +E + LF ++ H L + C
Sbjct: 44 AHNLFDKIPHRPTTLKEHNQLLFSYSRDKQTKEALNLFVSLL-----HSSLQPDESTLSC 98
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
V C +++ +LG+QVH K G ++S+ SL++ Y K + D VF ++ N
Sbjct: 99 VFNICAGSLDGKLGRQVHCQCVKFGLVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGERN 158
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
V WT+ + G + V+ F +M E + N YT S+V+ A G G Q+H
Sbjct: 159 VVSWTSLLAGYSWNGLYGYVWELFCQMQYEGVLPNRYTVSTVIAALVNEGVVG-IGLQVH 217
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
A +VK G E V L+ +Y + +LRDA VF+ + + ++ +WN+M+ GY+RNG
Sbjct: 218 AMVVKHGFEEAIPVFNSLISLYSRLGMLRDARDVFDKM-EIRDWVTWNSMIAGYVRNGQD 276
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIACSSI 334
+E + M+ +G++ + +C+S+
Sbjct: 277 LEVFEIFNKMQLAGVKPTHMTFASVIKSCASL 308
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 72/287 (25%), Positives = 131/287 (45%), Gaps = 11/287 (3%)
Query: 47 LFLNRLLLMHVSCGQLDTARQLFDEMPL-RDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
+ + L++ C ++D A LF M ++ SW MI G + + + LF++M
Sbjct: 331 IVITALMVALSKCKEMDDALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQM-- 388
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
R++G F I+ V + ++H + K R+ S+ +L++ Y K
Sbjct: 389 RREGVKPNHFTYSAILTVHYPVFVS-------EMHAEVIKTNYERSSSVGTALLDAYVKL 441
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
DA VF ++ + + W+A + + G + F ++ +E IK N +TFSSV+
Sbjct: 442 GNTIDAVKVFEIIEAKDLMAWSAMLAGYAQTGETEEAAKLFHQLIKEGIKPNEFTFSSVI 501
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
AC G+Q HA +K+ L + V LV MY K + A VF+ +++
Sbjct: 502 NACASPTAAAEQGKQFHAYAIKMRLNNALCVSSALVTMYAKRGNIDSAHEVFKR-QKERD 560
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+ SWN+M+ GY ++G +A + M+ + + + AC+
Sbjct: 561 LVSWNSMISGYSQHGQAKKALEVFDEMQKRNMDVDAVTFIGVITACT 607
>gi|4966374|gb|AAD34705.1|AC006341_33 >F3O9.28 [Arabidopsis thaliana]
Length = 1027
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 80/272 (29%), Positives = 128/272 (47%), Gaps = 6/272 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N LL M+ G+ A +F +MP +D SW ++ +V+ + + L M+ K
Sbjct: 390 NTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKS 449
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ F + L AC E G+ +HGL+ G N + +L++ YGK +
Sbjct: 450 VNYVTFTS-----ALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMS 504
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
++ V Q+ R + V W A I + + F+ M E + N T SVL AC
Sbjct: 505 ESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACL 564
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
D G+ +HA IV G ESDE+V+ L+ MY KC L ++ +F + D +NI +W
Sbjct: 565 LPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGL-DNRNIITW 623
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQE 321
NAML +G E K + M++ G+ + +
Sbjct: 624 NAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQ 655
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 133/287 (46%), Gaps = 14/287 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ G++ +R++ +MP RD +W +I GY + D + + F M R +G
Sbjct: 491 NALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTM--RVEG 548
Query: 110 HMLLVFPAWI-IVCVLKACVCTMNM-ELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
V +I +V VL AC+ ++ E GK +H + G + + SLI Y K
Sbjct: 549 ----VSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGD 604
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
L + +F+ L N + W A + N GH +V +M + + ++FS L A
Sbjct: 605 LSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSA 664
Query: 228 CG--GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
V ++ G+Q+H VK+G E D ++ DMY KC + + ++ V+ ++
Sbjct: 665 AAKLAVLEE---GQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLPPSVN-RS 720
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+ SWN ++ R+G + E + M GI+ L ACS
Sbjct: 721 LPSWNILISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACS 767
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 137/287 (47%), Gaps = 33/287 (11%)
Query: 42 IKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFA 101
++ ++L N L+ M+ G++ AR LFD MP+R+ SW M+ G V V Y E + F
Sbjct: 103 VRLSVLHTNTLINMYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFF- 161
Query: 102 EMMKRKKGHMLLVFPAWIIVCVLKACVCTMNM-ELGKQVHGLLFKLGSSRNISLTGSLIN 160
RK + + +++I ++ AC + +M G QVHG + K G ++ ++ ++++
Sbjct: 162 ----RKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILH 217
Query: 161 FYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYT 220
YG + + + VF ++ N V WT+ +V +G +V + +K
Sbjct: 218 LYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYK------------- 264
Query: 221 FSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELI 280
D + GRQ+ +VK GLES V+ L+ M G + A +F+ +
Sbjct: 265 -------------DESLGRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQM 311
Query: 281 VDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDL 327
++ I SWN++ Y +NG E+ + LM+ ++ + ++ L
Sbjct: 312 SERDTI-SWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTL 357
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 124/272 (45%), Gaps = 32/272 (11%)
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI 119
G + +R++F+EMP R+ SW ++VGY D + +E I ++ +
Sbjct: 223 GLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKDE---------------- 266
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
LG+Q+ G + K G +++ SLI+ G ++ A+++F Q+
Sbjct: 267 --------------SLGRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMS 312
Query: 180 RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGR 239
+T+ W + + GH + F F M R + NS T S++L G VD GR
Sbjct: 313 ERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQ-KWGR 371
Query: 240 QMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRN 299
+H +VK+G +S V L+ MY +A VF+ + K++ SWN+++ ++ +
Sbjct: 372 GIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQM-PTKDLISWNSLMASFVND 430
Query: 300 GLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
G ++A L M +SG + AC
Sbjct: 431 GRSLDALGLLCSMISSGKSVNYVTFTSALAAC 462
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 108/247 (43%), Gaps = 16/247 (6%)
Query: 57 VSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP 116
+ GQL T +F F W + V D E RKK H
Sbjct: 21 IRAGQLATQSPVFSGRRF-SFAQWICL----PPVQDATNLDIAMFEKSGRKKNH------ 69
Query: 117 AW--IIVCVLKACVCTMNMEL-GKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADF 173
W I C + + +E G+ VH L K ++ T +LIN Y KF ++ A
Sbjct: 70 -WNPEISCFDQIGFSQITIETTGRAVHALCVKGLVRLSVLHTNTLINMYTKFGRVKPARH 128
Query: 174 VFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDD 233
+F + N V W + R G + + F++M IK +S+ +S++ ACG
Sbjct: 129 LFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGS 188
Query: 234 DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
G Q+H + K GL SD YV ++ +YG L+ + +VFE + D +N+ SW +++
Sbjct: 189 MFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPD-RNVVSWTSLM 247
Query: 294 VGYIRNG 300
VGY G
Sbjct: 248 VGYSDKG 254
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 107/250 (42%), Gaps = 15/250 (6%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ CG L +++ LF+ + R+ +W M+ +E + L ++M R G
Sbjct: 593 NSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKM--RSFG 650
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
L F L A +E G+Q+HGL KLG + + + + Y K C E
Sbjct: 651 VSLDQFS---FSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSK--CGE 705
Query: 170 DADFV--FSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
+ V + W I R G+F +V F EM IK TF S+L A
Sbjct: 706 IGEVVKMLPPSVNRSLPSWNILISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTA 765
Query: 228 C--GGVDDDGNCGRQMHANIVKIGLESD-EYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
C GG+ D G M A GLE E+ C ++D+ G+ L +AE + K
Sbjct: 766 CSHGGLVDKGLAYYDMIAR--DFGLEPAIEHCIC-VIDLLGRSGRLAEAETFISKMPMKP 822
Query: 285 NIASWNAMLV 294
N W ++L
Sbjct: 823 NDLVWRSLLA 832
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 236 NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
GR +HA VK + L++MY K ++ A +F+ I+ +N SWN M+ G
Sbjct: 89 TTGRAVHALCVKGLVRLSVLHTNTLINMYTKFGRVKPARHLFD-IMPVRNEVSWNTMMSG 147
Query: 296 YIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
+R GLY+E +F M GI+ +I L AC
Sbjct: 148 IVRVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTAC 183
>gi|410109965|gb|AFV61062.1| pentatricopeptide repeat-containing protein 81, partial [Aloysia
herrerae]
Length = 399
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 82/290 (28%), Positives = 139/290 (47%), Gaps = 12/290 (4%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMP-LRDFNSWAVMIVGYVDVADYQEC-ITLFAEMMKR 106
LN + + CG ++ A+++FD RD +W M+ Y++ +EC +F EM+ +
Sbjct: 97 LNATITAYAECGCIEDAKRVFDSSDGFRDLVTWNSMLAAYLEYK-LEECGFNIFLEMVXQ 155
Query: 107 KKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF- 165
+ L A+ + ++ AC LGK +HGL+ K G + ++ +LI+ Y K
Sbjct: 156 R-----LEMDAYTLSSIISACFEDSQQSLGKSLHGLVIKKGLDQVTQISNALISMYLKSN 210
Query: 166 -RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
R +EDA +F + V W + + G F+ + + + + YTF++V
Sbjct: 211 SRNVEDALKIFEHXTVKDLVSWNTILTGLSQNGLSEIALRLFQNIHLDHLVIDQYTFAAV 270
Query: 225 LKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
L++C + GRQ+H +VK G E +EYV L+ MY KC ++ DA FE K+
Sbjct: 271 LRSCSDLAT-LQLGRQIHVLVVKSGFEGNEYVSSALIFMYSKCGIIEDARESFE-SSHKE 328
Query: 285 NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
+WN+++ Y ++G A YLM I++ ACS I
Sbjct: 329 TSVTWNSIIFAYAQHGQGKIALDLFYLMTERHIKLDHVTFVAAXTACSHI 378
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 74/251 (29%), Positives = 121/251 (48%), Gaps = 12/251 (4%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEM-MKRKKGHMLL 113
M+ C +++ A +F M R+ SW +I GY ++ + Q CI LF M M+ K
Sbjct: 2 MYAKCRRVEDANNVFMYMQERNTVSWNALIGGYAEMCNLQRCIELFMCMEMEGVKVDDAT 61
Query: 114 VFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADF 173
P +L + +L +Q+HG + K G ++ + I Y + C+EDA
Sbjct: 62 FAP------LLTLLYDAESYDLTRQLHGKIMKRGLEHENTVLNATITAYAECGCIEDAKR 115
Query: 174 VF-SQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVD 232
VF S + V W + + FN F EM +R++ ++YT SS++ AC D
Sbjct: 116 VFDSSDGFRDLVTWNSMLAAYLEYKLEECGFNIFLEMVXQRLEMDAYTLSSIISACFE-D 174
Query: 233 DDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGK--CRLLRDAERVFELIVDKKNIASWN 290
+ G+ +H ++K GL+ + L+ MY K R + DA ++FE K++ SWN
Sbjct: 175 SQQSLGKSLHGLVIKKGLDQVTQISNALISMYLKSNSRNVEDALKIFEHXT-VKDLVSWN 233
Query: 291 AMLVGYIRNGL 301
+L G +NGL
Sbjct: 234 TILTGLSQNGL 244
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 70/142 (49%), Gaps = 1/142 (0%)
Query: 160 NFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSY 219
+ Y K R +EDA+ VF ++ NTV W A I + + F M E +K +
Sbjct: 1 DMYAKCRRVEDANNVFMYMQERNTVSWNALIGGYAEMCNLQRCIELFMCMEMEGVKVDDA 60
Query: 220 TFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFEL 279
TF+ +L + + RQ+H I+K GLE + V + Y +C + DA+RVF+
Sbjct: 61 TFAPLLTLLYDAES-YDLTRQLHGKIMKRGLEHENTVLNATITAYAECGCIEDAKRVFDS 119
Query: 280 IVDKKNIASWNAMLVGYIRNGL 301
+++ +WN+ML Y+ L
Sbjct: 120 SDGFRDLVTWNSMLAAYLEYKL 141
>gi|15239085|ref|NP_201360.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75180382|sp|Q9LSL8.1|PP446_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g65570
gi|8978285|dbj|BAA98176.1| unnamed protein product [Arabidopsis thaliana]
gi|332010689|gb|AED98072.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 738
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 84/294 (28%), Positives = 151/294 (51%), Gaps = 12/294 (4%)
Query: 9 TTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQL 68
TT ++ L+++C ++ +G + H+ K + P + ++L+ + CG +D ARQ+
Sbjct: 64 TTHNFSQLLRQCIDERSISGIKTIQAHMLK--SGFPAEISGSKLVDASLKCGDIDYARQV 121
Query: 69 FDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCVLKAC 127
FD M R +W +I + +E + ++ M+ V P + + V KA
Sbjct: 122 FDGMSERHIVTWNSLIAYLIKHRRSKEAVEMYRLMITNN------VLPDEYTLSSVFKAF 175
Query: 128 VCTMNMELGKQVHGLLFKLG-SSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVW 186
+ ++ HGL LG N+ + +L++ Y KF +A V +++ + V+
Sbjct: 176 SDLSLEKEAQRSHGLAVILGLEVSNVFVGSALVDMYVKFGKTREAKLVLDRVEEKDVVLI 235
Query: 187 TAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIV 246
TA IV ++G + F+ M E+++ N YT++SVL +CG + D GN G+ +H +V
Sbjct: 236 TALIVGYSQKGEDTEAVKAFQSMLVEKVQPNEYTYASVLISCGNLKDIGN-GKLIHGLMV 294
Query: 247 KIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
K G ES Q L+ MY +C L+ D+ RVF+ I + N SW +++ G ++NG
Sbjct: 295 KSGFESALASQTSLLTMYLRCSLVDDSLRVFKCI-EYPNQVSWTSLISGLVQNG 347
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 82/283 (28%), Positives = 137/283 (48%), Gaps = 9/283 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+V G+ A+ + D + +D +IVGY + E + F M+ K
Sbjct: 207 LVDMYVKFGKTREAKLVLDRVEEKDVVLITALIVGYSQKGEDTEAVKAFQSMLVEK---- 262
Query: 112 LLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
V P + VL +C ++ GK +HGL+ K G ++ SL+ Y + ++D
Sbjct: 263 --VQPNEYTYASVLISCGNLKDIGNGKLIHGLMVKSGFESALASQTSLLTMYLRCSLVDD 320
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
+ VF ++ N V WT+ I + G +F++M R+ IK NS+T SS L+ C
Sbjct: 321 SLRVFKCIEYPNQVSWTSLISGLVQNGREEMALIEFRKMMRDSIKPNSFTLSSALRGCSN 380
Query: 231 VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWN 290
+ GRQ+H + K G + D+Y GL+D+YGKC A VF+ + + ++ S N
Sbjct: 381 LAMFEE-GRQIHGIVTKYGFDRDKYAGSGLIDLYGKCGCSDMARLVFDTL-SEVDVISLN 438
Query: 291 AMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSS 333
M+ Y +NG EA M G+Q + + + +AC++
Sbjct: 439 TMIYSYAQNGFGREALDLFERMINLGLQPNDVTVLSVLLACNN 481
>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
Length = 691
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 92/290 (31%), Positives = 142/290 (48%), Gaps = 22/290 (7%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ + S G + +AR++FD + RD SW MI GYV+ Y+E + LF EMM+
Sbjct: 155 LITGYASRGDVRSARKVFDXITERDVVSWNAMITGYVENCGYEEALELFKEMMRTN---- 210
Query: 112 LLVFP-AWIIVCVLKACVCTMNMELGKQVHGLL---FKLGSSRNISLTGSLINFYGKFRC 167
V P +V VL AC + ++ELG+++H L+ GSS + + + I Y K
Sbjct: 211 --VRPDEGTLVSVLSACAQSGSIELGREIHTLVDDHHGFGSS--LKIVNAFIGLYSKCGD 266
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
+E A +F L + V W I + + F+EM R N T SVL A
Sbjct: 267 VEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPA 326
Query: 228 C---GGVDDDGNCGRQMHANIVK--IGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282
C G +D GR +H I K G+ + ++ L+DMY KC + A +VF ++
Sbjct: 327 CAHLGAID----IGRWIHVYIDKRLKGVTNGSALRTSLIDMYAKCGDIEAAHQVFNSMM- 381
Query: 283 KKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
K+++SWNAM+ G+ +G A M+ +GI+ + + L ACS
Sbjct: 382 HKSLSSWNAMIFGFAMHGRANAAFDLFSRMRKNGIEPDDITLVGLLSACS 431
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 66/276 (23%), Positives = 127/276 (46%), Gaps = 17/276 (6%)
Query: 27 AGAFELLNHIRKRVN----IKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAV 82
+G+ EL I V+ +L +N + ++ CG ++ A LF+ + +D SW
Sbjct: 228 SGSIELGREIHTLVDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLSCKDVVSWNT 287
Query: 83 MIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGL 142
+I GY + Y+E + LF EM++ + + ++ VL AC +++G+ +H
Sbjct: 288 LIGGYTHMNLYKEALLLFQEMLRSGESPNDVT-----MLSVLPACAHLGAIDIGRWIHVY 342
Query: 143 LFKL--GSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFH 200
+ K G + +L SLI+ Y K +E A VF+ + + W A I G +
Sbjct: 343 IDKRLKGVTNGSALRTSLIDMYAKCGDIEAAHQVFNSMMHKSLSSWNAMIFGFAMHGRAN 402
Query: 201 QVFNDFKEMGRERIKKNSYTFSSVLKAC--GGVDDDGNCGRQMHANIVKIGLESDEYVQC 258
F+ F M + I+ + T +L AC G+ D GR + ++ + + +
Sbjct: 403 AAFDLFSRMRKNGIEPDDITLVGLLSACSHSGLLD---LGRHIFKSVTQDYNITPKLEHY 459
Query: 259 G-LVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
G ++D+ G L ++AE + ++ + + W ++L
Sbjct: 460 GCMIDLLGHAGLFKEAEEIIHMMPMEPDGVIWCSLL 495
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 76/314 (24%), Positives = 122/314 (38%), Gaps = 45/314 (14%)
Query: 62 LDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIV 121
L A +F+ + W M+ G +D + ++ M+ GH V A+
Sbjct: 33 LPYAVSVFETXQEPNLLIWNTMLRGLASSSDLVSPLEMYVRMVS--XGH---VPNAYTFP 87
Query: 122 CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQ---- 177
+LK+C + E G+Q+H + KLG + SLI+ Y + LEDA VF
Sbjct: 88 FLLKSCAKSKTFEEGRQIHAQVMKLGCELDRYAHTSLISMYARNGRLEDARKVFDXSSQR 147
Query: 178 ---------------------------LKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMG 210
+ + V W A I + + FKEM
Sbjct: 148 DVVSCTALITGYASRGDVRSARKVFDXITERDVVSWNAMITGYVENCGYEEALELFKEMM 207
Query: 211 RERIKKNSYTFSSVLKAC---GGVDDDGNCGRQMHANI-VKIGLESDEYVQCGLVDMYGK 266
R ++ + T SVL AC G ++ GR++H + G S + + +Y K
Sbjct: 208 RTNVRPDEGTLVSVLSACAQSGSIE----LGREIHTLVDDHHGFGSSLKIVNAFIGLYSK 263
Query: 267 CRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLIND 326
C + A +FE + K++ SWN ++ GY LY EA M SG + +
Sbjct: 264 CGDVEIASGLFEGL-SCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLS 322
Query: 327 LRIACSSISASKIN 340
+ AC+ + A I
Sbjct: 323 VLPACAHLGAIDIG 336
>gi|326507410|dbj|BAK03098.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 698
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 85/287 (29%), Positives = 131/287 (45%), Gaps = 13/287 (4%)
Query: 50 NRLLLMH-VSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
N+LL + VS L AR+LFDE+P D SW ++ +V + + L M +R
Sbjct: 38 NQLLTAYSVSSPGLAAARRLFDEIPRLDAASWNSLLAAHVSIGAHPAACRLLRAMHERG- 96
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
L + + L++ LG Q+H L K G + N+ +L++ Y K
Sbjct: 97 ----LAANTFALGSALRSAAAMGCSALGTQLHSLAVKAGLADNVFSATALLHMYAKCGRT 152
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
DA +F + NTV W A + G F EM RE + TF+++L
Sbjct: 153 RDACRLFDGMPERNTVSWNALVAGYVESGKVAPAVQLFVEMEREGFLPDEATFAALLT-- 210
Query: 229 GGVDDDGNC--GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
V +D C Q+H IVK G V + Y +C L ++ R+F+ I D+ ++
Sbjct: 211 --VVNDSTCFLMHQLHGKIVKYGSALGLIVLNAAITAYSQCGALANSRRIFDEIGDRSDL 268
Query: 287 ASWNAMLVGYIRNGLYVEATKFLY-LMKASGIQIQESLINDLRIACS 332
SWNAML Y +G+ EA +F +M+ASG+Q + AC+
Sbjct: 269 ISWNAMLGAYATHGMEHEAMRFFASMMRASGVQPDMYSFTSIISACA 315
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/308 (26%), Positives = 142/308 (46%), Gaps = 14/308 (4%)
Query: 33 LNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVAD 92
L+ + + + + LL M+ CG+ A +LFD MP R+ SW ++ GYV+
Sbjct: 123 LHSLAVKAGLADNVFSATALLHMYAKCGRTRDACRLFDGMPERNTVSWNALVAGYVESGK 182
Query: 93 YQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNI 152
+ LF EM + F A + V C L Q+HG + K GS+ +
Sbjct: 183 VAPAVQLFVEMEREGFLPDEATFAALLTVVNDSTCF------LMHQLHGKIVKYGSALGL 236
Query: 153 SLTGSLINFYGKFRCLEDADFVFSQL-KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGR 211
+ + I Y + L ++ +F ++ R + + W A + G H+ F M R
Sbjct: 237 IVLNAAITAYSQCGALANSRRIFDEIGDRSDLISWNAMLGAYATHGMEHEAMRFFASMMR 296
Query: 212 ER-IKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCR-- 268
++ + Y+F+S++ AC D G G +H + K G E +V L+ MY +
Sbjct: 297 ASGVQPDMYSFTSIISACAEHRDHG--GTVIHGLVSKNGFEGVTHVCNALIAMYTRFSEN 354
Query: 269 -LLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDL 327
++ DA + F+ ++ K + SWN+ML GY ++GL +A +F M++ I E +
Sbjct: 355 CMMEDAYKCFDSLLLKDTV-SWNSMLTGYSQHGLSADALRFFRCMQSENITTDEYAFSAA 413
Query: 328 RIACSSIS 335
+CS ++
Sbjct: 414 LRSCSDLA 421
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 79/260 (30%), Positives = 122/260 (46%), Gaps = 13/260 (5%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLR-DFNSWAVMIVGYVDVADYQECITLFAEMM 104
L+ LN + + CG L +R++FDE+ R D SW M+ Y E + FA MM
Sbjct: 236 LIVLNAAITAYSQCGALANSRRIFDEIGDRSDLISWNAMLGAYATHGMEHEAMRFFASMM 295
Query: 105 KRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYG 163
R G V P + ++ AC + G +HGL+ K G + +LI Y
Sbjct: 296 -RASG----VQPDMYSFTSIISACAEHRD-HGGTVIHGLVSKNGFEGVTHVCNALIAMYT 349
Query: 164 KFR---CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYT 220
+F +EDA F L +TV W + + + G F+ M E I + Y
Sbjct: 350 RFSENCMMEDAYKCFDSLLLKDTVSWNSMLTGYSQHGLSADALRFFRCMQSENITTDEYA 409
Query: 221 FSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELI 280
FS+ L++C + GRQ+H +++ G S+ +V L+ MY K +L DA + FE
Sbjct: 410 FSAALRSCSDLALL-RLGRQIHGLVIRSGFASNNFVSSSLIFMYSKSGILDDAMKSFEE- 467
Query: 281 VDKKNIASWNAMLVGYIRNG 300
DK + WN+M+ GY ++G
Sbjct: 468 ADKSSSVPWNSMMFGYAQHG 487
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/293 (22%), Positives = 129/293 (44%), Gaps = 16/293 (5%)
Query: 8 ITTDMY--TCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQ---L 62
+ DMY T +I C +D G +++ + + + N L+ M+ + +
Sbjct: 300 VQPDMYSFTSIISACAEHRDHGGT--VIHGLVSKNGFEGVTHVCNALIAMYTRFSENCMM 357
Query: 63 DTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVC 122
+ A + FD + L+D SW M+ GY + + F M + +
Sbjct: 358 EDAYKCFDSLLLKDTVSWNSMLTGYSQHGLSADALRFFRCMQSEN-----ITTDEYAFSA 412
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
L++C + LG+Q+HGL+ + G + N ++ SLI Y K L+DA F + + +
Sbjct: 413 ALRSCSDLALLRLGRQIHGLVIRSGFASNNFVSSSLIFMYSKSGILDDAMKSFEEADKSS 472
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--GGVDDDGNCGRQ 240
+V W + + + G V + F +M ++ + TF ++ AC G+ D+G+
Sbjct: 473 SVPWNSMMFGYAQHGKAQAVRSLFNQMLELKVPLDHITFVGLITACSHAGLVDEGSEILN 532
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
+ I L + Y CG +D+YG+ L A+ + + + + + W +L
Sbjct: 533 TMESRYGIPLRMEHYA-CG-IDLYGRAGQLDKAKELIDSMPFEPDAMVWMTLL 583
>gi|238478502|ref|NP_173097.2| PPR repeat domain-containing protein [Arabidopsis thaliana]
gi|332191338|gb|AEE29459.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
Length = 937
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 80/272 (29%), Positives = 128/272 (47%), Gaps = 6/272 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N LL M+ G+ A +F +MP +D SW ++ +V+ + + L M+ K
Sbjct: 300 NTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKS 359
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ F + L AC E G+ +HGL+ G N + +L++ YGK +
Sbjct: 360 VNYVTFTS-----ALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMS 414
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
++ V Q+ R + V W A I + + F+ M E + N T SVL AC
Sbjct: 415 ESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACL 474
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
D G+ +HA IV G ESDE+V+ L+ MY KC L ++ +F + D +NI +W
Sbjct: 475 LPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGL-DNRNIITW 533
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQE 321
NAML +G E K + M++ G+ + +
Sbjct: 534 NAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQ 565
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 142/274 (51%), Gaps = 8/274 (2%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+ G++ AR LFD MP+R+ SW M+ G V V Y E + F RK + +
Sbjct: 1 MYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFF-----RKMCDLGIK 55
Query: 115 FPAWIIVCVLKACVCTMNM-ELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADF 173
+++I ++ AC + +M G QVHG + K G ++ ++ ++++ YG + + +
Sbjct: 56 PSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRK 115
Query: 174 VFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDD 233
VF ++ N V WT+ +V +G +V + +K M E + N + S V+ +CG + D
Sbjct: 116 VFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKD 175
Query: 234 DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
+ + GRQ+ +VK GLES V+ L+ M G + A +F+ + ++ I SWN++
Sbjct: 176 E-SLGRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTI-SWNSIA 233
Query: 294 VGYIRNGLYVEATKFLYLMKASGIQIQESLINDL 327
Y +NG E+ + LM+ ++ + ++ L
Sbjct: 234 AAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTL 267
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 76/276 (27%), Positives = 132/276 (47%), Gaps = 15/276 (5%)
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG----HMLLVF 115
G + +R++F+EMP R+ SW ++VGY D + +E I ++ M G M LV
Sbjct: 108 GLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLV- 166
Query: 116 PAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVF 175
+ +C + LG+Q+ G + K G +++ SLI+ G ++ A+++F
Sbjct: 167 --------ISSCGLLKDESLGRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIF 218
Query: 176 SQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDG 235
Q+ +T+ W + + GH + F F M R + NS T S++L G VD
Sbjct: 219 DQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQ- 277
Query: 236 NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
GR +H +VK+G +S V L+ MY +A VF+ + K++ SWN+++
Sbjct: 278 KWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQM-PTKDLISWNSLMAS 336
Query: 296 YIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
++ +G ++A L M +SG + AC
Sbjct: 337 FVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAAC 372
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 133/287 (46%), Gaps = 14/287 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ G++ +R++ +MP RD +W +I GY + D + + F M R +G
Sbjct: 401 NALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTM--RVEG 458
Query: 110 HMLLVFPAWI-IVCVLKACVCTMNM-ELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
V +I +V VL AC+ ++ E GK +H + G + + SLI Y K
Sbjct: 459 ----VSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGD 514
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
L + +F+ L N + W A + N GH +V +M + + ++FS L A
Sbjct: 515 LSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSA 574
Query: 228 CG--GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
V ++ G+Q+H VK+G E D ++ DMY KC + + ++ V+ ++
Sbjct: 575 AAKLAVLEE---GQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLPPSVN-RS 630
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+ SWN ++ R+G + E + M GI+ L ACS
Sbjct: 631 LPSWNILISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACS 677
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 77/319 (24%), Positives = 142/319 (44%), Gaps = 10/319 (3%)
Query: 14 TCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMP 73
+ +I C KD + +++ + K ++ L N L+ M S G +D A +FD+M
Sbjct: 164 SLVISSCGLLKDESLGRQIIGQVVKS-GLESKLAVENSLISMLGSMGNVDYANYIFDQMS 222
Query: 74 LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNM 133
RD SW + Y +E +F+ +M+R + + + +L +
Sbjct: 223 ERDTISWNSIAAAYAQNGHIEESFRIFS-LMRRFHDEV----NSTTVSTLLSVLGHVDHQ 277
Query: 134 ELGKQVHGLLFKLGSSRNISLTGSLINFY-GKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192
+ G+ +HGL+ K+G + + +L+ Y G R +E A+ VF Q+ + + W + + +
Sbjct: 278 KWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVE-ANLVFKQMPTKDLISWNSLMAS 336
Query: 193 NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLES 252
+G M N TF+S L AC D GR +H +V GL
Sbjct: 337 FVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAAC-FTPDFFEKGRILHGLVVVSGLFY 395
Query: 253 DEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLM 312
++ + LV MYGK + ++ RV L + ++++ +WNA++ GY + +A M
Sbjct: 396 NQIIGNALVSMYGKIGEMSESRRVL-LQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTM 454
Query: 313 KASGIQIQESLINDLRIAC 331
+ G+ + + AC
Sbjct: 455 RVEGVSSNYITVVSVLSAC 473
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 107/250 (42%), Gaps = 15/250 (6%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ CG L +++ LF+ + R+ +W M+ +E + L ++M R G
Sbjct: 503 NSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKM--RSFG 560
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
L F L A +E G+Q+HGL KLG + + + + Y K C E
Sbjct: 561 VSLDQFS---FSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSK--CGE 615
Query: 170 DADFV--FSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
+ V + W I R G+F +V F EM IK TF S+L A
Sbjct: 616 IGEVVKMLPPSVNRSLPSWNILISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTA 675
Query: 228 C--GGVDDDGNCGRQMHANIVKIGLESD-EYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
C GG+ D G M A GLE E+ C ++D+ G+ L +AE + K
Sbjct: 676 CSHGGLVDKGLAYYDMIAR--DFGLEPAIEHCIC-VIDLLGRSGRLAEAETFISKMPMKP 732
Query: 285 NIASWNAMLV 294
N W ++L
Sbjct: 733 NDLVWRSLLA 742
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 263 MYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQES 322
MY K ++ A +F+ I+ +N SWN M+ G +R GLY+E +F M GI+
Sbjct: 1 MYTKFGRVKPARHLFD-IMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSF 59
Query: 323 LINDLRIAC 331
+I L AC
Sbjct: 60 VIASLVTAC 68
>gi|302799994|ref|XP_002981755.1| hypothetical protein SELMODRAFT_115083 [Selaginella moellendorffii]
gi|300150587|gb|EFJ17237.1| hypothetical protein SELMODRAFT_115083 [Selaginella moellendorffii]
Length = 673
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 94/348 (27%), Positives = 152/348 (43%), Gaps = 25/348 (7%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCG 60
MD+ LPIT +Y LI+ C + HI R LN L+ M+ C
Sbjct: 1 MDHSRLPITVPLYESLIRRCANPHSLEAGRSIHAHI-LRHGYGGERFLLNSLVEMYCKCD 59
Query: 61 QLDTARQLFDEMPLRDFN-SWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AW 118
L A +F+ + W ++I +E I L+ M V P A
Sbjct: 60 SLRDATAVFELVARERIAFPWNILIAANAQRGQSRESIALYRRMSCEG------VKPNAI 113
Query: 119 IIVCVLKACVCTMNMELGKQVHGLLFKLGSSR--------NISLTGSLINFYGKFRCLED 170
+V VL AC +++ G+++H G SR + + +L+ YG+ + D
Sbjct: 114 TLVSVLGACANLEDLKTGREIHRSHVLGGRSRPYERPMPVDAVMATALVTMYGRCGSVAD 173
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC-- 228
A VF + + W A + R G Q + M E ++ TF +L C
Sbjct: 174 ARAVFEGICGRDLAAWNAMVAAYSRNGQMAQAVLVLRRMAVEGVRPGEGTFVGMLSWCCT 233
Query: 229 -GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
G +D+ R +HA+I+ GLES V LV MYG+C L A F+ I DK +I
Sbjct: 234 VGALDE----ARSIHAHILATGLESRPTVGTTLVSMYGRCGSLGGAVCAFQRIRDK-DIV 288
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
+WNAM+ Y ++G ++ + ++M G+++ + + + ACSS++
Sbjct: 289 AWNAMIAAYAQSGHSRDSIRIYHVMDLEGVRVDKVTLIGVLDACSSLA 336
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 105/236 (44%), Gaps = 11/236 (4%)
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
H L + +++ C ++E G+ +H + + G L SL+ Y K L
Sbjct: 3 HSRLPITVPLYESLIRRCANPHSLEAGRSIHAHILRHGYGGERFLLNSLVEMYCKCDSLR 62
Query: 170 DADFVFSQLKRHNTV-VWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
DA VF + R W I N + G + ++ M E +K N+ T SVL AC
Sbjct: 63 DATAVFELVARERIAFPWNILIAANAQRGQSRESIALYRRMSCEGVKPNAITLVSVLGAC 122
Query: 229 GGVDDDGNCGRQMHANIVKIG--------LESDEYVQCGLVDMYGKCRLLRDAERVFELI 280
++D GR++H + V G + D + LV MYG+C + DA VFE I
Sbjct: 123 ANLEDL-KTGREIHRSHVLGGRSRPYERPMPVDAVMATALVTMYGRCGSVADARAVFEGI 181
Query: 281 VDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+ ++A+WNAM+ Y RNG +A L M G++ E + C ++ A
Sbjct: 182 CGR-DLAAWNAMVAAYSRNGQMAQAVLVLRRMAVEGVRPGEGTFVGMLSWCCTVGA 236
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/268 (23%), Positives = 117/268 (43%), Gaps = 9/268 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ CG + AR +F+ + RD +W M+ Y + + + M
Sbjct: 161 LVTMYGRCGSVADARAVFEGICGRDLAAWNAMVAAYSRNGQMAQAVLVLRRMAVEG---- 216
Query: 112 LLVFPA-WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
V P V +L C ++ + +H + G ++ +L++ YG+ L
Sbjct: 217 --VRPGEGTFVGMLSWCCTVGALDEARSIHAHILATGLESRPTVGTTLVSMYGRCGSLGG 274
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
A F +++ + V W A I + GH + M E ++ + T VL AC
Sbjct: 275 AVCAFQRIRDKDIVAWNAMIAAYAQSGHSRDSIRIYHVMDLEGVRVDKVTLIGVLDACSS 334
Query: 231 VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWN 290
+ R +HA IV G+E D + LV+ Y + L DA+ VF + +++N+A+W+
Sbjct: 335 LALTSKT-RLVHARIVDTGVELDVVLGTALVNAYARGGHLVDADLVFAEM-EERNVATWS 392
Query: 291 AMLVGYIRNGLYVEATKFLYLMKASGIQ 318
AM+ Y + G + + M+ G++
Sbjct: 393 AMVAAYAQTGHPDRSLEMYREMQLQGLR 420
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/259 (24%), Positives = 115/259 (44%), Gaps = 23/259 (8%)
Query: 43 KPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAE 102
+PT+ L+ M+ CG L A F + +D +W MI Y ++ I ++
Sbjct: 255 RPTVG--TTLVSMYGRCGSLGGAVCAFQRIRDKDIVAWNAMIAAYAQSGHSRDSIRIYHV 312
Query: 103 MMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFY 162
M + ++ VL AC + VH + G ++ L +L+N Y
Sbjct: 313 MDLEG-----VRVDKVTLIGVLDACSSLALTSKTRLVHARIVDTGVELDVVLGTALVNAY 367
Query: 163 GKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFS 222
+ L DAD VF++++ N W+A + + GH + ++EM + ++ N T+
Sbjct: 368 ARGGHLVDADLVFAEMEERNVATWSAMVAAYAQTGHPDRSLEMYREMQLQGLRPNYITYV 427
Query: 223 SVLKACG-------GVDDDGNCGRQMHANIVKIGLES-DEYVQCGLVDMYGKCRLLRDAE 274
S+L AC G+D + GR G+ES +E+ C +VD+ G+ L +AE
Sbjct: 428 SILFACNHAGLLDHGLDYFASMGRDY-------GIESCEEHCSC-IVDLLGRSGRLDEAE 479
Query: 275 RVFELIVDKKNIASWNAML 293
+ + + I++W +L
Sbjct: 480 ALMASVPYRLGISAWMCLL 498
>gi|255543589|ref|XP_002512857.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223547868|gb|EEF49360.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 454
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 95/340 (27%), Positives = 159/340 (46%), Gaps = 14/340 (4%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLL-MHVSC 59
M L L + C IK C+ D + H + V + LF++ L+ M+ C
Sbjct: 73 MRKLNLKPNRSTFPCAIKACSSLLDLHWGKQ--THQQALVFGFESDLFVSSALVDMYSKC 130
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMM----KRKKGHMLLVF 115
G+L AR LFDE+ R+ W MI GY+ E + LF + + +R + ++
Sbjct: 131 GRLSDARILFDEITHRNIVIWTSMITGYIQNDHAHEALLLFKQFLIEESERNEEKDEVLM 190
Query: 116 PAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVF 175
+ +V VL AC + K VHG + K G ++ + +L++ Y K + + VF
Sbjct: 191 DSVAMVSVLSACSRISGKGMTKGVHGFVVKKGLDEDVGIENTLLDAYAKCGEVGVSRQVF 250
Query: 176 SQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGR-ERIKKNSYTFSSVLKACG--GVD 232
++ + + W + I + G + F F M + +K N+ T S++L AC G
Sbjct: 251 DEIVEKDAISWNSMIAVYAQNGLSSEAFEVFHGMIKYGYVKYNAVTLSTLLLACAHSGAL 310
Query: 233 DDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAM 292
G C +H ++++GL+ + V L+DMY KC ++ A + F+ + +KN+ SW AM
Sbjct: 311 QTGKC---IHDQVIRMGLDDNVIVGTSLIDMYCKCGRVQMARKTFDGM-KEKNVKSWTAM 366
Query: 293 LVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+ GY +G EA Y M SG++ + ACS
Sbjct: 367 VAGYGMHGCAREALNIFYKMIRSGVKPNYITFVSVLAACS 406
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 125/268 (46%), Gaps = 17/268 (6%)
Query: 79 SWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQ 138
SW +I D E + F M K FP C +KAC +++ GKQ
Sbjct: 49 SWNSLIADLARSGDSIESLRAFYSMRKLNLKPNRSTFP-----CAIKACSSLLDLHWGKQ 103
Query: 139 VHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGH 198
H G ++ ++ +L++ Y K L DA +F ++ N V+WT+ I + H
Sbjct: 104 THQQALVFGFESDLFVSSALVDMYSKCGRLSDARILFDEITHRNIVIWTSMITGYIQNDH 163
Query: 199 FHQVFNDFKEMGRERIKKN---------SYTFSSVLKACGGVDDDGNCGRQMHANIVKIG 249
H+ FK+ E ++N S SVL AC + G + +H +VK G
Sbjct: 164 AHEALLLFKQFLIEESERNEEKDEVLMDSVAMVSVLSACSRISGKGMT-KGVHGFVVKKG 222
Query: 250 LESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFL 309
L+ D ++ L+D Y KC + + +VF+ IV+K I SWN+M+ Y +NGL EA +
Sbjct: 223 LDEDVGIENTLLDAYAKCGEVGVSRQVFDEIVEKDAI-SWNSMIAVYAQNGLSSEAFEVF 281
Query: 310 Y-LMKASGIQIQESLINDLRIACSSISA 336
+ ++K ++ ++ L +AC+ A
Sbjct: 282 HGMIKYGYVKYNAVTLSTLLLACAHSGA 309
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 104/232 (44%), Gaps = 18/232 (7%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N LL + CG++ +RQ+FDE+ +D SW MI Y E +F M+K
Sbjct: 231 NTLLDAYAKCGEVGVSRQVFDEIVEKDAISWNSMIAVYAQNGLSSEAFEVFHGMIK---- 286
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ + + A + +L AC + ++ GK +H + ++G N+ + SLI+ Y K ++
Sbjct: 287 YGYVKYNAVTLSTLLLACAHSGALQTGKCIHDQVIRMGLDDNVIVGTSLIDMYCKCGRVQ 346
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC- 228
A F +K N WTA + G + N F +M R +K N TF SVL AC
Sbjct: 347 MARKTFDGMKEKNVKSWTAMVAGYGMHGCAREALNIFYKMIRSGVKPNYITFVSVLAACS 406
Query: 229 -GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFEL 279
G+ D+G A + I + +G +LL+ V EL
Sbjct: 407 HAGLLDEGYFQLDQQAFLAAI------------TERHGAGKLLKSKSLVVEL 446
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 79/168 (47%), Gaps = 11/168 (6%)
Query: 178 LKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC 237
++ N W + I + R G + F M + +K N TF +KAC + D +
Sbjct: 42 FEKTNVFSWNSLIADLARSGDSIESLRAFYSMRKLNLKPNRSTFPCAIKACSSLLDL-HW 100
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYI 297
G+Q H + G ESD +V LVDMY KC L DA +F+ I +NI W +M+ GYI
Sbjct: 101 GKQTHQQALVFGFESDLFVSSALVDMYSKCGRLSDARILFDEIT-HRNIVIWTSMITGYI 159
Query: 298 RNGLYVEA----TKFLYLMKASGIQIQESLINDLRI-----ACSSISA 336
+N EA +FL + E L++ + + ACS IS
Sbjct: 160 QNDHAHEALLLFKQFLIEESERNEEKDEVLMDSVAMVSVLSACSRISG 207
>gi|410110057|gb|AFV61108.1| pentatricopeptide repeat-containing protein 81, partial
[Xeroaloysia ovatifolia]
Length = 391
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 81/290 (27%), Positives = 141/290 (48%), Gaps = 12/290 (4%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMP-LRDFNSWAVMIVGYVDVADYQEC-ITLFAEMMKR 106
LN + + CG ++ A+++F+ RD +W M+ Y++ + +EC +F EM+++
Sbjct: 97 LNATITAYAECGCIEDAKRVFNSSDGYRDLVTWNSMLAAYLE-HNLEECGFNIFLEMVRQ 155
Query: 107 KKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF- 165
L A+ + ++ AC LGK +HGL+ K G ++ +LI+ Y K
Sbjct: 156 S-----LEMDAYTLSSIISACFEDSQQSLGKSLHGLVIKKGLDEVTQISNALISMYLKSN 210
Query: 166 -RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
R +EDA +F ++ + V W + + G F+ + + + + YTF++V
Sbjct: 211 SRNVEDALKIFERVNVKDLVSWNTMLTGLSQNGLSENALRLFQNIHLDHLVIDQYTFAAV 270
Query: 225 LKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
L++C + GRQ+H +VK G E +EYV L+ MY KC ++ DA FE K+
Sbjct: 271 LRSCSDLAT-LQLGRQIHVLVVKSGFEGNEYVSSALIFMYSKCGIIEDARESFE-SSHKE 328
Query: 285 NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
+WN+++ Y ++G A YLM I++ ACS I
Sbjct: 329 TSVTWNSIIFAYAQHGQGKIALDLFYLMTERHIKLDHVTFVAALTACSHI 378
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 78/289 (26%), Positives = 138/289 (47%), Gaps = 12/289 (4%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEM-MKRKKGHMLL 113
M+ C +++ A +F M R+ SW +I GY ++ + + CI LF M M K
Sbjct: 2 MYAKCRKVEDANNVFKFMEERNTVSWNALIGGYAEMGNLERCIELFMRMEMDSVKIDDAT 61
Query: 114 VFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADF 173
P ++C + +L +Q+HG + K G ++ + I Y + C+EDA
Sbjct: 62 FAPLLTLLCDAEL------YDLTRQLHGKIMKCGLEHENTVLNATITAYAECGCIEDAKR 115
Query: 174 VFSQLKRH-NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVD 232
VF+ + + V W + + FN F EM R+ ++ ++YT SS++ AC D
Sbjct: 116 VFNSSDGYRDLVTWNSMLAAYLEHNLEECGFNIFLEMVRQSLEMDAYTLSSIISACFE-D 174
Query: 233 DDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGK--CRLLRDAERVFELIVDKKNIASWN 290
+ G+ +H ++K GL+ + L+ MY K R + DA ++FE V+ K++ SWN
Sbjct: 175 SQQSLGKSLHGLVIKKGLDEVTQISNALISMYLKSNSRNVEDALKIFER-VNVKDLVSWN 233
Query: 291 AMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKI 339
ML G +NGL A + + + I + + +CS ++ ++
Sbjct: 234 TMLTGLSQNGLSENALRLFQNIHLDHLVIDQYTFAAVLRSCSDLATLQL 282
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 71/143 (49%), Gaps = 3/143 (2%)
Query: 160 NFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSY 219
+ Y K R +EDA+ VF ++ NTV W A I G+ + F M + +K +
Sbjct: 1 DMYAKCRKVEDANNVFKFMEERNTVSWNALIGGYAEMGNLERCIELFMRMEMDSVKIDDA 60
Query: 220 TFSSVLKA-CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE 278
TF+ +L C D RQ+H I+K GLE + V + Y +C + DA+RVF
Sbjct: 61 TFAPLLTLLCDAELYD--LTRQLHGKIMKCGLEHENTVLNATITAYAECGCIEDAKRVFN 118
Query: 279 LIVDKKNIASWNAMLVGYIRNGL 301
+++ +WN+ML Y+ + L
Sbjct: 119 SSDGYRDLVTWNSMLAAYLEHNL 141
>gi|334182623|ref|NP_001185013.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
gi|332191339|gb|AEE29460.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
Length = 928
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 80/272 (29%), Positives = 128/272 (47%), Gaps = 6/272 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N LL M+ G+ A +F +MP +D SW ++ +V+ + + L M+ K
Sbjct: 283 NTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKS 342
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ F + L AC E G+ +HGL+ G N + +L++ YGK +
Sbjct: 343 VNYVTFTS-----ALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMS 397
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
++ V Q+ R + V W A I + + F+ M E + N T SVL AC
Sbjct: 398 ESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACL 457
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
D G+ +HA IV G ESDE+V+ L+ MY KC L ++ +F + D +NI +W
Sbjct: 458 LPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGL-DNRNIITW 516
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQE 321
NAML +G E K + M++ G+ + +
Sbjct: 517 NAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQ 548
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 76/276 (27%), Positives = 132/276 (47%), Gaps = 15/276 (5%)
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG----HMLLVF 115
G + +R++F+EMP R+ SW ++VGY D + +E I ++ M G M LV
Sbjct: 91 GLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLV- 149
Query: 116 PAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVF 175
+ +C + LG+Q+ G + K G +++ SLI+ G ++ A+++F
Sbjct: 150 --------ISSCGLLKDESLGRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIF 201
Query: 176 SQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDG 235
Q+ +T+ W + + GH + F F M R + NS T S++L G VD
Sbjct: 202 DQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQ- 260
Query: 236 NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
GR +H +VK+G +S V L+ MY +A VF+ + K++ SWN+++
Sbjct: 261 KWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQM-PTKDLISWNSLMAS 319
Query: 296 YIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
++ +G ++A L M +SG + AC
Sbjct: 320 FVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAAC 355
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 133/287 (46%), Gaps = 14/287 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ G++ +R++ +MP RD +W +I GY + D + + F M R +G
Sbjct: 384 NALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTM--RVEG 441
Query: 110 HMLLVFPAWI-IVCVLKACVCTMNM-ELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
V +I +V VL AC+ ++ E GK +H + G + + SLI Y K
Sbjct: 442 ----VSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGD 497
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
L + +F+ L N + W A + N GH +V +M + + ++FS L A
Sbjct: 498 LSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSA 557
Query: 228 CG--GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
V ++ G+Q+H VK+G E D ++ DMY KC + + ++ V+ ++
Sbjct: 558 AAKLAVLEE---GQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLPPSVN-RS 613
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+ SWN ++ R+G + E + M GI+ L ACS
Sbjct: 614 LPSWNILISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACS 660
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 132/257 (51%), Gaps = 8/257 (3%)
Query: 72 MPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTM 131
MP+R+ SW M+ G V V Y E + F RK + + +++I ++ AC +
Sbjct: 1 MPVRNEVSWNTMMSGIVRVGLYLEGMEFF-----RKMCDLGIKPSSFVIASLVTACGRSG 55
Query: 132 NM-ELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKI 190
+M G QVHG + K G ++ ++ ++++ YG + + + VF ++ N V WT+ +
Sbjct: 56 SMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLM 115
Query: 191 VNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGL 250
V +G +V + +K M E + N + S V+ +CG + D+ + GRQ+ +VK GL
Sbjct: 116 VGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDE-SLGRQIIGQVVKSGL 174
Query: 251 ESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLY 310
ES V+ L+ M G + A +F+ + ++ I SWN++ Y +NG E+ +
Sbjct: 175 ESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTI-SWNSIAAAYAQNGHIEESFRIFS 233
Query: 311 LMKASGIQIQESLINDL 327
LM+ ++ + ++ L
Sbjct: 234 LMRRFHDEVNSTTVSTL 250
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 77/319 (24%), Positives = 142/319 (44%), Gaps = 10/319 (3%)
Query: 14 TCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMP 73
+ +I C KD + +++ + K ++ L N L+ M S G +D A +FD+M
Sbjct: 147 SLVISSCGLLKDESLGRQIIGQVVKS-GLESKLAVENSLISMLGSMGNVDYANYIFDQMS 205
Query: 74 LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNM 133
RD SW + Y +E +F+ +M+R + + + +L +
Sbjct: 206 ERDTISWNSIAAAYAQNGHIEESFRIFS-LMRRFHDEV----NSTTVSTLLSVLGHVDHQ 260
Query: 134 ELGKQVHGLLFKLGSSRNISLTGSLINFY-GKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192
+ G+ +HGL+ K+G + + +L+ Y G R +E A+ VF Q+ + + W + + +
Sbjct: 261 KWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVE-ANLVFKQMPTKDLISWNSLMAS 319
Query: 193 NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLES 252
+G M N TF+S L AC D GR +H +V GL
Sbjct: 320 FVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAAC-FTPDFFEKGRILHGLVVVSGLFY 378
Query: 253 DEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLM 312
++ + LV MYGK + ++ RV L + ++++ +WNA++ GY + +A M
Sbjct: 379 NQIIGNALVSMYGKIGEMSESRRVL-LQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTM 437
Query: 313 KASGIQIQESLINDLRIAC 331
+ G+ + + AC
Sbjct: 438 RVEGVSSNYITVVSVLSAC 456
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 107/250 (42%), Gaps = 15/250 (6%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ CG L +++ LF+ + R+ +W M+ +E + L ++M R G
Sbjct: 486 NSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKM--RSFG 543
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
L F L A +E G+Q+HGL KLG + + + + Y K C E
Sbjct: 544 VSLDQFS---FSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSK--CGE 598
Query: 170 DADFV--FSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
+ V + W I R G+F +V F EM IK TF S+L A
Sbjct: 599 IGEVVKMLPPSVNRSLPSWNILISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTA 658
Query: 228 C--GGVDDDGNCGRQMHANIVKIGLESD-EYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
C GG+ D G M A GLE E+ C ++D+ G+ L +AE + K
Sbjct: 659 CSHGGLVDKGLAYYDMIAR--DFGLEPAIEHCIC-VIDLLGRSGRLAEAETFISKMPMKP 715
Query: 285 NIASWNAMLV 294
N W ++L
Sbjct: 716 NDLVWRSLLA 725
Score = 38.5 bits (88), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%)
Query: 284 KNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
+N SWN M+ G +R GLY+E +F M GI+ +I L AC
Sbjct: 4 RNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTAC 51
>gi|302763721|ref|XP_002965282.1| hypothetical protein SELMODRAFT_83339 [Selaginella moellendorffii]
gi|300167515|gb|EFJ34120.1| hypothetical protein SELMODRAFT_83339 [Selaginella moellendorffii]
Length = 721
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 91/339 (26%), Positives = 156/339 (46%), Gaps = 25/339 (7%)
Query: 6 LPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTA 65
+P T + + C+ D E+ I+ I+P+++ + M+ CG L TA
Sbjct: 135 VPPTAMTFATALSACSSLGDLQRGREIHARIKASRGIRPSVILDTAIFSMYAKCGDLSTA 194
Query: 66 RQLFDEMPLRDFNSWAVMIVGYVDVA-DYQECITLFAEMMKRKKGHMLLVFPAWIIVCVL 124
+ +FD +P ++ SW +I Y + + + LF +M + F V VL
Sbjct: 195 KSVFDRIPAKNVVSWNALIAAYAQSGHSHHQALDLFEKMAEHGVRPCRATF-----VGVL 249
Query: 125 KACVCTMNMELGKQVHGLLFKLG---SSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH 181
AC ++E ++H + + G R++ + +L+N Y K LE A +F +++R
Sbjct: 250 GACNDVTSLE---KIHARIVETGLQFDVRDVGVQNALLNMYAKCGSLEVARDIFRKMQRR 306
Query: 182 NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA---CGGVDDDGNCG 238
+ V I ++G + F+EM E + ++ TF+SV+ A CG ++ G
Sbjct: 307 DQVSMNVMIATFAQQGLGKESIQVFREMDLEGLPQDDTTFASVITACSCCGALE----FG 362
Query: 239 RQMHANIVKIGLE-----SDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
+++H +V+ L + V+ LV MYGKC L A+ VF+ + KN SWNAML
Sbjct: 363 KRIHKRVVEPVLGRKCCLPNVVVETALVSMYGKCGTLEQAKAVFKAMT-TKNSVSWNAML 421
Query: 294 VGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
G EA FL G+++ + + IACS
Sbjct: 422 AACAHQGQGDEAAAFLRAAACEGVELDSASFISVLIACS 460
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 92/341 (26%), Positives = 153/341 (44%), Gaps = 30/341 (8%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCG 60
+D+L I +D + I+ C KDS + +++ R + + N L+LM G
Sbjct: 35 LDSLEREIQSDSFAAAIRSC---KDS-NSVSIIHQKITRAGLGSSAYLNNLLVLMLAKHG 90
Query: 61 QLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWI 119
L AR +FD + ++ SW ++I Y + LFA+M V P A
Sbjct: 91 SLCEARSIFDAIQHKNIFSWNIIISAYAHRGHPSTALHLFAKMD---------VPPTAMT 141
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNIS----LTGSLINFYGKFRCLEDADFVF 175
L AC +++ G+++H ++ +SR I L ++ + Y K L A VF
Sbjct: 142 FATALSACSSLGDLQRGREIHA---RIKASRGIRPSVILDTAIFSMYAKCGDLSTAKSVF 198
Query: 176 SQLKRHNTVVWTAKIVNNCREGH-FHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDD 234
++ N V W A I + GH HQ + F++M ++ TF VL AC +D
Sbjct: 199 DRIPAKNVVSWNALIAAYAQSGHSHHQALDLFEKMAEHGVRPCRATFVGVLGAC----ND 254
Query: 235 GNCGRQMHANIVKIGLE---SDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
++HA IV+ GL+ D VQ L++MY KC L A +F + +++ S N
Sbjct: 255 VTSLEKIHARIVETGLQFDVRDVGVQNALLNMYAKCGSLEVARDIFRKM-QRRDQVSMNV 313
Query: 292 MLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
M+ + + GL E+ + M G+ ++ + ACS
Sbjct: 314 MIATFAQQGLGKESIQVFREMDLEGLPQDDTTFASVITACS 354
>gi|77553706|gb|ABA96502.1| SEC14 cytosolic factor, putative [Oryza sativa Japonica Group]
gi|125535837|gb|EAY82325.1| hypothetical protein OsI_37535 [Oryza sativa Indica Group]
gi|125578563|gb|EAZ19709.1| hypothetical protein OsJ_35285 [Oryza sativa Japonica Group]
Length = 630
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 83/283 (29%), Positives = 134/283 (47%), Gaps = 7/283 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ ++ CGQ D AR++FD M +R SW MI GY + E + LF+ M ++G
Sbjct: 95 NILINLYTKCGQNDCARRVFDAMSVRSIISWNTMIAGYTHNREDVEALKLFSRM--HREG 152
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ F +C AC + KQ+H + KL + + + ++ Y K ++
Sbjct: 153 TQMTEFTLSSTLC---ACAAKYAIIECKQLHTIAIKLALDSSSFVGTAFLDVYAKCNMIK 209
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
DA +VF + +V W++ + G +V F+ RE ++ +T SS+L C
Sbjct: 210 DACWVFENMPEKTSVTWSSLFAGFVQNGLHEEVLCLFQSTQREGMQLTEFTVSSILSTCA 269
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ G Q+HA IVK G + +V LVD+Y KC + + VF + ++KN+ W
Sbjct: 270 SLALIIE-GTQVHAVIVKHGFHRNLFVATSLVDVYAKCGQIEKSYEVFADM-EEKNVVLW 327
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
NAM+ + R+ EA M+ GI E + ACS
Sbjct: 328 NAMIASFSRHAHSWEAMILFEKMQQVGIFPNEVTYLSILSACS 370
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 101/213 (47%), Gaps = 2/213 (0%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
+L+ C ++ +GK HGL G + LIN Y K + A VF + +
Sbjct: 62 LLQLCAKRRSLLVGKSCHGLAIHFGLVTDTVTCNILINLYTKCGQNDCARRVFDAMSVRS 121
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
+ W I + F M RE + +T SS L AC C +Q+H
Sbjct: 122 IISWNTMIAGYTHNREDVEALKLFSRMHREGTQMTEFTLSSTLCACAAKYAIIEC-KQLH 180
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
+K+ L+S +V +D+Y KC +++DA VFE + +K ++ +W+++ G+++NGL+
Sbjct: 181 TIAIKLALDSSSFVGTAFLDVYAKCNMIKDACWVFENMPEKTSV-TWSSLFAGFVQNGLH 239
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
E + G+Q+ E ++ + C+S++
Sbjct: 240 EEVLCLFQSTQREGMQLTEFTVSSILSTCASLA 272
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 115/251 (45%), Gaps = 23/251 (9%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L ++ C + A +F+ MP + +W+ + G+V ++E + LF +++G
Sbjct: 198 FLDVYAKCNMIKDACWVFENMPEKTSVTWSSLFAGFVQNGLHEEVLCLFQST--QREGMQ 255
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
L F + +L C + G QVH ++ K G RN+ + SL++ Y K +E +
Sbjct: 256 LTEF---TVSSILSTCASLALIIEGTQVHAVIVKHGFHRNLFVATSLVDVYAKCGQIEKS 312
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG-- 229
VF+ ++ N V+W A I + R H + F++M + I N T+ S+L AC
Sbjct: 313 YEVFADMEEKNVVLWNAMIASFSRHAHSWEAMILFEKMQQVGIFPNEVTYLSILSACSHT 372
Query: 230 GVDDDGN-------CGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282
G+ ++G R N++ + C +VD+ G+ +A ++ + +
Sbjct: 373 GLVEEGRHYFNLLLSDRTAEPNVL--------HYSC-MVDVLGRSGKTDEAWKLLDKMPF 423
Query: 283 KKNIASWNAML 293
+ + W ++L
Sbjct: 424 EPTASMWGSLL 434
>gi|410110043|gb|AFV61101.1| pentatricopeptide repeat-containing protein 81, partial [Lippia
velutina]
Length = 357
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/274 (27%), Positives = 135/274 (49%), Gaps = 10/274 (3%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMP-LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRK 107
LN + + CG ++ A+++FD RD +W M+ Y++ + + +F EM++++
Sbjct: 79 LNATITAYAECGXIEDAKRVFDSSDGFRDLVTWNSMLAAYLEHNLEEYGLNIFLEMVRQR 138
Query: 108 KGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF-- 165
L A+ + V+ AC LGK +HG + K G ++ +LI+ Y K
Sbjct: 139 -----LEMDAYTLSSVISACFEDTQQSLGKSLHGFVIKKGLDEVTQISNALISMYLKSNS 193
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
R +EDA +F + + V W + + G F+ + + + + YTF++VL
Sbjct: 194 RNVEDALKIFEHINVKDLVSWNTILTGLSQNGLSENALRLFQNIHLDHLVTDQYTFAAVL 253
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
++C + + GRQ+H +VK G E +EYV L+ MY KC ++ DA FE K+
Sbjct: 254 RSCSDLAT-LHLGRQIHVLVVKSGFEGNEYVASALIFMYSKCGIIEDAWESFE-SSHKET 311
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQI 319
+WN+++ Y ++G A YLM I++
Sbjct: 312 SVTWNSIIFAYAQHGQGKIALDLFYLMTERRIKL 345
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 112/238 (47%), Gaps = 10/238 (4%)
Query: 75 RDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNME 134
R+ SW +I GY ++ + + C+ LF M G F +L + +
Sbjct: 4 RNAVSWNALIGGYAEMGNLERCVALFVGMEMEGVGVDDATFAP-----LLTLLNDAXSYD 58
Query: 135 LGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVF-SQLKRHNTVVWTAKIVNN 193
L +Q+HG + K G ++ + I Y + +EDA VF S + V W + +
Sbjct: 59 LTRQLHGKIMKRGLEYENTVLNATITAYAECGXIEDAKRVFDSSDGFRDLVTWNSMLAAY 118
Query: 194 CREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESD 253
N F EM R+R++ ++YT SSV+ AC D + G+ +H ++K GL+
Sbjct: 119 LEHNLEEYGLNIFLEMVRQRLEMDAYTLSSVISACFE-DTQQSLGKSLHGFVIKKGLDEV 177
Query: 254 EYVQCGLVDMYGK--CRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFL 309
+ L+ MY K R + DA ++FE I + K++ SWN +L G +NGL A +
Sbjct: 178 TQISNALISMYLKSNSRNVEDALKIFEHI-NVKDLVSWNTILTGLSQNGLSENALRLF 234
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 79/181 (43%), Gaps = 7/181 (3%)
Query: 50 NRLLLMHVSCGQ--LDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRK 107
N L+ M++ ++ A ++F+ + ++D SW ++ G + + LF +
Sbjct: 182 NALISMYLKSNSRNVEDALKIFEHINVKDLVSWNTILTGLSQNGLSENALRLFQNIHLDH 241
Query: 108 KGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
LV + VL++C + LG+Q+H L+ K G N + +LI Y K
Sbjct: 242 -----LVTDQYTFAAVLRSCSDLATLHLGRQIHVLVVKSGFEGNEYVASALIFMYSKCGI 296
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
+EDA F + +V W + I + G + F M RIK + TF + L A
Sbjct: 297 IEDAWESFESSHKETSVTWNSIIFAYAQHGQGKIALDLFYLMTERRIKLDHVTFVAALTA 356
Query: 228 C 228
C
Sbjct: 357 C 357
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 1/124 (0%)
Query: 178 LKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC 237
L+ N V W A I G+ + F M E + + TF+ +L +
Sbjct: 1 LRERNAVSWNALIGGYAEMGNLERCVALFVGMEMEGVGVDDATFAPLLTLLNDAXS-YDL 59
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYI 297
RQ+H I+K GLE + V + Y +C + DA+RVF+ +++ +WN+ML Y+
Sbjct: 60 TRQLHGKIMKRGLEYENTVLNATITAYAECGXIEDAKRVFDSSDGFRDLVTWNSMLAAYL 119
Query: 298 RNGL 301
+ L
Sbjct: 120 EHNL 123
>gi|297848206|ref|XP_002891984.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297337826|gb|EFH68243.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 611
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/301 (24%), Positives = 151/301 (50%), Gaps = 8/301 (2%)
Query: 32 LLNHIRKRVNIKPTLLFLNRLLLMHVSCG-QLDTARQLFDEMPLRDFNSWAVMIVGYVDV 90
L++ + ++ ++ +L N L+ M+ +C ++ A +F ++ +++ +W +I G+ +
Sbjct: 132 LVHGVVVKLGMEGSLYVDNALMNMYATCSVTMEAAFLIFRDIKVKNDVTWTTLITGFTHL 191
Query: 91 ADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSR 150
D + ++ +M+ V P I + V +A ++ GKQ+H + K G
Sbjct: 192 GDGIGGLKMYKQMLLENAD----VTPYCITIAV-RASASIDSVTTGKQIHASVVKRGFQS 246
Query: 151 NISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMG 210
N+ + S+++FY + L +A F +++ + + W +++ + F+
Sbjct: 247 NLPVMNSILDFYCRCGYLSEAKRYFHEMEDKDLITWNT-LISELERSDSSEALLMFQRFE 305
Query: 211 RERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLL 270
+ N YTF+S++ AC + NCG+Q+H I + G + + L+DMY KC +
Sbjct: 306 SQGFVPNCYTFTSLVAACANIAAL-NCGQQLHGRIYRRGFNKNVELANALIDMYAKCGDI 364
Query: 271 RDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIA 330
D+ERVF I +++N+ SW +M++GY +G EA + M +SGI+ + + A
Sbjct: 365 PDSERVFGEIEERRNLVSWTSMMIGYGSHGYGAEAVELFDKMVSSGIRPDRIVFMAVLSA 424
Query: 331 C 331
C
Sbjct: 425 C 425
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 82/292 (28%), Positives = 135/292 (46%), Gaps = 11/292 (3%)
Query: 47 LFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECI-TLFAEMMK 105
+ L++ + G ++ AR LFDEMP RD +W MI GY ++Y C F EM K
Sbjct: 46 ILATNLIVSYFEKGLVEEARSLFDEMPERDVVAWTAMITGYAS-SNYNSCAWECFHEMFK 104
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
+ + + + VLK+C + G VHG++ KLG ++ + +L+N Y
Sbjct: 105 QGRSP-----NEFTLSSVLKSCRNMKVLAYGALVHGVVVKLGMEGSLYVDNALMNMYATC 159
Query: 166 RCLEDADF-VFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
+A F +F +K N V WT I G +K+M E Y +
Sbjct: 160 SVTMEAAFLIFRDIKVKNDVTWTTLITGFTHLGDGIGGLKMYKQMLLENADVTPYCITIA 219
Query: 225 LKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
++A +D G+Q+HA++VK G +S+ V ++D Y +C L +A+R F + D K
Sbjct: 220 VRASASIDSV-TTGKQIHASVVKRGFQSNLPVMNSILDFYCRCGYLSEAKRYFHEMED-K 277
Query: 285 NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
++ +WN L+ + EA ++ G L AC++I+A
Sbjct: 278 DLITWNT-LISELERSDSSEALLMFQRFESQGFVPNCYTFTSLVAACANIAA 328
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 122/254 (48%), Gaps = 11/254 (4%)
Query: 43 KPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAE 102
+ L +N +L + CG L A++ F EM +D +W +I ++ +D E + +F
Sbjct: 245 QSNLPVMNSILDFYCRCGYLSEAKRYFHEMEDKDLITWNTLI-SELERSDSSEALLMFQR 303
Query: 103 MMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFY 162
+ V + ++ AC + G+Q+HG +++ G ++N+ L +LI+ Y
Sbjct: 304 FESQG-----FVPNCYTFTSLVAACANIAALNCGQQLHGRIYRRGFNKNVELANALIDMY 358
Query: 163 GKFRCLEDADFVFSQLK-RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTF 221
K + D++ VF +++ R N V WT+ ++ G+ + F +M I+ + F
Sbjct: 359 AKCGDIPDSERVFGEIEERRNLVSWTSMMIGYGSHGYGAEAVELFDKMVSSGIRPDRIVF 418
Query: 222 SSVLKAC--GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFEL 279
+VL AC G+ + G + + + G+ D + +VD+ G+ + +A + E
Sbjct: 419 MAVLSACRHAGLVEKGL--KYFNVMESEYGINPDRDIYNCVVDLLGRAGKIGEAYELVER 476
Query: 280 IVDKKNIASWNAML 293
+ K + ++W A+L
Sbjct: 477 MPFKPDESTWGAIL 490
>gi|302770521|ref|XP_002968679.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
gi|300163184|gb|EFJ29795.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
Length = 818
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 86/289 (29%), Positives = 139/289 (48%), Gaps = 13/289 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFN--SWAVMIVGYVDVADYQECITLFAEMMKRK 107
N L+ M+ C L AR +F+ M R N SW MI Y E + L+ M +
Sbjct: 46 NALISMYGKCDSLVDARSVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQG 105
Query: 108 KGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
G + F V VL AC ++ G+++H +F G SL +L+ Y +F
Sbjct: 106 LGTDHVTF-----VSVLGAC---SSLAQGREIHNRVFYSGLDSFQSLANALVTMYARFGS 157
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
+ DA +F L+ + W A I+ + + G + FKEM + +K NS T+ +V+
Sbjct: 158 VGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEM-KCDVKPNSTTYINVISG 216
Query: 228 CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
+ GR++HA IV G ++D V L++MYGKC +A VF+ + K+++
Sbjct: 217 FSTPEVLPE-GRKIHAEIVANGFDTDLVVATALINMYGKCGSSHEAREVFDKM-KKRDMV 274
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
SWN M+ Y+ NG + EA + + G + ++ + ACSS+ A
Sbjct: 275 SWNVMIGCYVLNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKA 323
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 89/326 (27%), Positives = 142/326 (43%), Gaps = 50/326 (15%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFA---- 101
L+ L+ M+ CG AR++FD+M RD SW VMI YV D+ E + L+
Sbjct: 242 LVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVLNGDFHEALELYQKLDM 301
Query: 102 EMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINF 161
E KR K V +L AC + G+ VH + + G +++ +L+N
Sbjct: 302 EGFKRTKA---------TFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNM 352
Query: 162 YGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGH------FHQVFND---------- 205
Y K LE+A VF+ +K + V W+ I G+ +VF+
Sbjct: 353 YAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTISWN 412
Query: 206 ------------------FKEM-GRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIV 246
F+EM G +K ++ TF +VL+AC + + +HA I
Sbjct: 413 AMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEV-KALHAQIS 471
Query: 247 KIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEAT 306
+ LES+ V L++MY +C L +AER+F +K + SW AM+ + + G Y EA
Sbjct: 472 ESELESNVVVTNTLINMYARCGSLEEAERLFA-AAKEKTVVSWTAMVAAFSQYGRYAEAL 530
Query: 307 KFLYLMKASGIQIQESLINDLRIACS 332
M G++ + + C+
Sbjct: 531 DLFQEMDLEGVKPDDVTYTSILFVCT 556
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 81/319 (25%), Positives = 143/319 (44%), Gaps = 41/319 (12%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ G + A+++F + RD SW +I+ + D+ + +F EM K
Sbjct: 146 NALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEMKCDVKP 205
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ + + V+ + G+++H + G ++ + +LIN YGK
Sbjct: 206 N------STTYINVISGFSTPEVLPEGRKIHAEIVANGFDTDLVVATALINMYGKCGSSH 259
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
+A VF ++K+ + V W I G FH+ ++++ E K+ TF S+L AC
Sbjct: 260 EAREVFDKMKKRDMVSWNVMIGCYVLNGDFHEALELYQKLDMEGFKRTKATFVSILGACS 319
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA-- 287
V GR +H++I++ GL+S+ V LV+MY KC L +A +VF + ++ +A
Sbjct: 320 SVKALAQ-GRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWS 378
Query: 288 -------------------------------SWNAMLVGYIRNGLYVEATK-FLYLMKAS 315
SWNAM+ Y++NG V A K F + A+
Sbjct: 379 TLIGAYASNGYGKDARKARKVFDRLGSRDTISWNAMITTYVQNGCAVAAMKIFREMTGAA 438
Query: 316 GIQIQESLINDLRIACSSI 334
G++ + AC+S+
Sbjct: 439 GLKPDAVTFIAVLEACASL 457
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/319 (22%), Positives = 134/319 (42%), Gaps = 35/319 (10%)
Query: 9 TTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQL 68
T + ++ C+ K A + +HI +R + + L+ M+ CG L+ AR++
Sbjct: 307 TKATFVSILGACSSVKALAQGRLVHSHILER-GLDSEVAVATALVNMYAKCGSLEEARKV 365
Query: 69 FDEMPLRDFNSWAVMIVGYV---------------------DVADYQECITLFAE----- 102
F+ M RD +W+ +I Y D + IT + +
Sbjct: 366 FNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTISWNAMITTYVQNGCAV 425
Query: 103 ----MMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
+ + G L A + VL+AC + K +H + + N+ +T +L
Sbjct: 426 AAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQISESELESNVVVTNTL 485
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
IN Y + LE+A+ +F+ K V WTA + + G + + + F+EM E +K +
Sbjct: 486 INMYARCGSLEEAERLFAAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQEMDLEGVKPDD 545
Query: 219 YTFSSVLKAC--GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERV 276
T++S+L C GG + G A + + +D + +VD+ G+ L DA+ +
Sbjct: 546 VTYTSILFVCTHGGSLEQGWRYFTDMAELHALAPTADHFA--AMVDLLGRSGRLFDAKEL 603
Query: 277 FELIVDKKNIASWNAMLVG 295
E + + + +W L
Sbjct: 604 LESMPFEPDPVAWMTFLTA 622
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 61/125 (48%), Gaps = 2/125 (1%)
Query: 215 KKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAE 274
+ ++ TF +VL +C D GR +H I E D V L+ MYGKC L DA
Sbjct: 4 QPDNVTFLTVLCSCSSCGDVVE-GRALHERIRCSRFERDTMVGNALISMYGKCDSLVDAR 62
Query: 275 RVFE-LIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSS 333
VFE + ++N+ SWNAM+ Y +NG EA + M G+ + ACSS
Sbjct: 63 SVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSS 122
Query: 334 ISASK 338
++ +
Sbjct: 123 LAQGR 127
>gi|410110023|gb|AFV61091.1| pentatricopeptide repeat-containing protein 81, partial [Lippia
lupulina]
Length = 375
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/289 (27%), Positives = 139/289 (48%), Gaps = 10/289 (3%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDE-MPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRK 107
LN + + CG ++ A+++FD RD +W M+ Y++ + +F EM+K++
Sbjct: 93 LNATITAYAECGCIEDAKRVFDSSHGYRDLVTWNSMLAAYLEQNLEEYGFNIFLEMVKQR 152
Query: 108 KGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF-- 165
L A+ + V+ AC LGK +HG + K G ++ +L++ Y K
Sbjct: 153 -----LEMDAYTLSSVISACFEDTQQSLGKSLHGFVIKKGLGHVTQISNALVSMYLKSNS 207
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
R +EDA +F + + V W + + G F+ + + + + YTF++VL
Sbjct: 208 RNVEDALKIFEHINIKDLVSWNTILTGLSQNGLSENALRLFQNIHLDHLLTDQYTFAAVL 267
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
++C + + GRQ+H +VK G E +EYV L+ MY KC ++ DA FE + K+
Sbjct: 268 RSCSDLAT-LHLGRQIHVLVVKSGYEGNEYVASALIFMYSKCGIIEDAWESFESSL-KET 325
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
+WN+++ Y ++G A YLM I++ ACS I
Sbjct: 326 SVTWNSIIFAYAQHGQGKIALDLFYLMTERRIKLDHVTFVAALTACSHI 374
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/254 (28%), Positives = 123/254 (48%), Gaps = 10/254 (3%)
Query: 59 CGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAW 118
C +++ A ++F M R+ SW +I GY ++ D + C+TLF M +
Sbjct: 2 CRRVEDANKVFKYMRERNAVSWNALIGGYAEMGDLERCVTLFVGMEIEG-----VRVDDA 56
Query: 119 IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVF-SQ 177
+L + +L +Q+HG + + G ++ + I Y + C+EDA VF S
Sbjct: 57 TFAPLLTLLNDAESYDLTRQLHGKIMRRGLEYENTVLNATITAYAECGCIEDAKRVFDSS 116
Query: 178 LKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC 237
+ V W + + + FN F EM ++R++ ++YT SSV+ AC D +
Sbjct: 117 HGYRDLVTWNSMLAAYLEQNLEEYGFNIFLEMVKQRLEMDAYTLSSVISACFE-DTQQSL 175
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGK--CRLLRDAERVFELIVDKKNIASWNAMLVG 295
G+ +H ++K GL + LV MY K R + DA ++FE I + K++ SWN +L G
Sbjct: 176 GKSLHGFVIKKGLGHVTQISNALVSMYLKSNSRNVEDALKIFEHI-NIKDLVSWNTILTG 234
Query: 296 YIRNGLYVEATKFL 309
+NGL A +
Sbjct: 235 LSQNGLSENALRLF 248
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 67/138 (48%), Gaps = 1/138 (0%)
Query: 164 KFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSS 223
K R +EDA+ VF ++ N V W A I G + F M E ++ + TF+
Sbjct: 1 KCRRVEDANKVFKYMRERNAVSWNALIGGYAEMGDLERCVTLFVGMEIEGVRVDDATFAP 60
Query: 224 VLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
+L + + RQ+H I++ GLE + V + Y +C + DA+RVF+
Sbjct: 61 LLTLLNDAES-YDLTRQLHGKIMRRGLEYENTVLNATITAYAECGCIEDAKRVFDSSHGY 119
Query: 284 KNIASWNAMLVGYIRNGL 301
+++ +WN+ML Y+ L
Sbjct: 120 RDLVTWNSMLAAYLEQNL 137
>gi|147841045|emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera]
Length = 1309
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/289 (27%), Positives = 144/289 (49%), Gaps = 11/289 (3%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L+ N+L+ + LD A LFD M +RD SW+VM+ G+ V DY C F E+++
Sbjct: 770 LIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYMNCFGTFRELIR 829
Query: 106 --RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYG 163
+ + L F V++AC N+++G+ +H +++K G + + +L++ YG
Sbjct: 830 CGARPDNYTLPF-------VIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYG 882
Query: 164 KFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSS 223
K R +EDA F+F ++ + V WT I G+ ++ F +M E + + +
Sbjct: 883 KCREIEDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVT 942
Query: 224 VLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
V+ AC + + R + I + + D + ++DM+ KC + A +F+ + ++
Sbjct: 943 VVFACAKL-GAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRM-EE 1000
Query: 284 KNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
KN+ SW+AM+ Y +G +A +M SGI + + L ACS
Sbjct: 1001 KNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACS 1049
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/289 (26%), Positives = 145/289 (50%), Gaps = 11/289 (3%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
++ N+L+ + LD A LFD M +RD SW+VM+ G+ V DY C F E+++
Sbjct: 94 IVVANKLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYINCFGTFRELIR 153
Query: 106 --RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYG 163
+ + L F V++AC N+++G+ +H +++K G + + +L++ Y
Sbjct: 154 CGARPDNYTLPF-------VIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYV 206
Query: 164 KFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSS 223
K R +EDA F+F +++ + V WT I G ++ F++M E + + +
Sbjct: 207 KCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVT 266
Query: 224 VLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
V+ AC + + R + I + + D + ++DMY KC + A +F+ + ++
Sbjct: 267 VVFACAKL-GAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRM-EE 324
Query: 284 KNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
KN+ SW+AM+ Y +G +A +M +SG+ + + L ACS
Sbjct: 325 KNVISWSAMIAAYGYHGQGRKALDLFPMMLSSGMLPDKITLASLLYACS 373
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 104/205 (50%), Gaps = 2/205 (0%)
Query: 132 NMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIV 191
N+ +QVH G +N+ + L+ FY +R L+DA +F + ++V W+ +
Sbjct: 750 NLTQVRQVHXQASVHGMLQNLIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSVMVG 809
Query: 192 NNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLE 251
+ G + F F+E+ R + ++YT V++AC + + GR +H + K GL+
Sbjct: 810 GFAKVGDYMNCFGTFRELIRCGARPDNYTLPFVIRACRDL-KNLQMGRLIHHIVYKFGLD 868
Query: 252 SDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYL 311
D +V LVDMYGKCR + DA +F+ + + +++ +W M+ GY G E+
Sbjct: 869 LDHFVCAALVDMYGKCREIEDARFLFDKMXE-RDLVTWTVMIGGYAECGNANESLVLFDK 927
Query: 312 MKASGIQIQESLINDLRIACSSISA 336
M+ G+ + + + AC+ + A
Sbjct: 928 MREEGVVPDKVAMVTVVFACAKLGA 952
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 105/213 (49%), Gaps = 2/213 (0%)
Query: 124 LKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNT 183
+ A V N+ +QVH G NI + LI FY +R L+DA +F + ++
Sbjct: 66 ISALVNCRNLTQVRQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGMCVRDS 125
Query: 184 VVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHA 243
V W+ + + G + F F+E+ R + ++YT V++AC + + GR +H
Sbjct: 126 VSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDL-KNLQMGRLIHH 184
Query: 244 NIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYV 303
+ K GL+ D +V LVDMY KCR + DA +F+ + ++++ +W M+ GY G
Sbjct: 185 IVYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKM-QERDLVTWTVMIGGYAECGKAN 243
Query: 304 EATKFLYLMKASGIQIQESLINDLRIACSSISA 336
E+ M+ G+ + + + AC+ + A
Sbjct: 244 ESLVLFEKMREEGVVPDKVAMVTVVFACAKLGA 276
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 78/305 (25%), Positives = 133/305 (43%), Gaps = 39/305 (12%)
Query: 2 DNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQ 61
DN LP +I+ C K+ L++HI + + L+ M+ C +
Sbjct: 835 DNYTLPF-------VIRACRDLKNLQMG-RLIHHIVYKFGLDLDHFVCAALVDMYGKCRE 886
Query: 62 LDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI-I 120
++ AR LFD+M RD +W VMI GY + + E + LF +M R++G V P + +
Sbjct: 887 IEDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLFDKM--REEG----VVPDKVAM 940
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
V V+ AC M + + + + ++ L ++I+ + K C+E A +F +++
Sbjct: 941 VTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEE 1000
Query: 181 HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQ 240
N + W+A I G + + F M R I N T S+L AC
Sbjct: 1001 KNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACS----------- 1049
Query: 241 MHANIVKIGLE------SDEYVQCGL------VDMYGKCRLLRDAERVFELIVDKKNIAS 288
HA +V+ GL D V+ + VD+ G+ L +A ++ + +K+
Sbjct: 1050 -HAGLVEEGLRFFSXMWEDYSVRXDVKHYTCVVDLLGRAGRLDEALKLIXSMTXEKDEGL 1108
Query: 289 WNAML 293
W A L
Sbjct: 1109 WGAFL 1113
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 76/305 (24%), Positives = 133/305 (43%), Gaps = 39/305 (12%)
Query: 2 DNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQ 61
DN LP +I+ C K+ L++HI + + L+ M+V C +
Sbjct: 159 DNYTLPF-------VIRACRDLKNLQMG-RLIHHIVYKFGLDLDHFVCAALVDMYVKCRE 210
Query: 62 LDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI-I 120
++ AR LFD+M RD +W VMI GY + E + LF +M R++G V P + +
Sbjct: 211 IEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKM--REEG----VVPDKVAM 264
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
V V+ AC M + + + + ++ L ++I+ Y K C+E A +F +++
Sbjct: 265 VTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEE 324
Query: 181 HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQ 240
N + W+A I G + + F M + + T +S+L AC
Sbjct: 325 KNVISWSAMIAAYGYHGQGRKALDLFPMMLSSGMLPDKITLASLLYACS----------- 373
Query: 241 MHANIVKIGLE------------SDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
HA +V+ GL +D +VD+ G+ L +A ++ + + +K+
Sbjct: 374 -HAGLVEEGLRFFSSMWEDYSVRTDVKHYTCVVDLLGRAGRLDEALKLIKSMTIEKDEGL 432
Query: 289 WNAML 293
W A L
Sbjct: 433 WGAFL 437
>gi|15223562|ref|NP_176050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75173051|sp|Q9FXA9.1|PPR83_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g56570
gi|9954755|gb|AAG09106.1|AC009323_17 Hypothetical protein [Arabidopsis thaliana]
gi|332195289|gb|AEE33410.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 611
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/301 (24%), Positives = 151/301 (50%), Gaps = 8/301 (2%)
Query: 32 LLNHIRKRVNIKPTLLFLNRLLLMHVSCG-QLDTARQLFDEMPLRDFNSWAVMIVGYVDV 90
L++ + ++ ++ +L N ++ M+ +C ++ A +F ++ +++ +W +I G+ +
Sbjct: 132 LVHGVVVKLGMEGSLYVDNAMMNMYATCSVTMEAACLIFRDIKVKNDVTWTTLITGFTHL 191
Query: 91 ADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSR 150
D + ++ +M+ V P I + V +A ++ GKQ+H + K G
Sbjct: 192 GDGIGGLKMYKQMLLENAE----VTPYCITIAV-RASASIDSVTTGKQIHASVIKRGFQS 246
Query: 151 NISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMG 210
N+ + S+++ Y + L +A F +++ + + W +++ + F+
Sbjct: 247 NLPVMNSILDLYCRCGYLSEAKHYFHEMEDKDLITWNT-LISELERSDSSEALLMFQRFE 305
Query: 211 RERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLL 270
+ N YTF+S++ AC + NCG+Q+H I + G + + L+DMY KC +
Sbjct: 306 SQGFVPNCYTFTSLVAACANIAAL-NCGQQLHGRIFRRGFNKNVELANALIDMYAKCGNI 364
Query: 271 RDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIA 330
D++RVF IVD++N+ SW +M++GY +G EA + M +SGI+ + + A
Sbjct: 365 PDSQRVFGEIVDRRNLVSWTSMMIGYGSHGYGAEAVELFDKMVSSGIRPDRIVFMAVLSA 424
Query: 331 C 331
C
Sbjct: 425 C 425
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/291 (26%), Positives = 132/291 (45%), Gaps = 9/291 (3%)
Query: 47 LFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR 106
+ L++ + G ++ AR LFDEMP RD +W MI GY F EM+K+
Sbjct: 46 ILATNLIVSYFEKGLVEEARSLFDEMPDRDVVAWTAMITGYASSNYNARAWECFHEMVKQ 105
Query: 107 KKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166
+ + VLK+C + G VHG++ KLG ++ + +++N Y
Sbjct: 106 GTSP-----NEFTLSSVLKSCRNMKVLAYGALVHGVVVKLGMEGSLYVDNAMMNMYATCS 160
Query: 167 -CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
+E A +F +K N V WT I G +K+M E + Y + +
Sbjct: 161 VTMEAACLIFRDIKVKNDVTWTTLITGFTHLGDGIGGLKMYKQMLLENAEVTPYCITIAV 220
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
+A +D G+Q+HA+++K G +S+ V ++D+Y +C L +A+ F + D K+
Sbjct: 221 RASASIDSV-TTGKQIHASVIKRGFQSNLPVMNSILDLYCRCGYLSEAKHYFHEMED-KD 278
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+ +WN L+ + EA ++ G L AC++I+A
Sbjct: 279 LITWNT-LISELERSDSSEALLMFQRFESQGFVPNCYTFTSLVAACANIAA 328
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 120/254 (47%), Gaps = 11/254 (4%)
Query: 43 KPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAE 102
+ L +N +L ++ CG L A+ F EM +D +W +I ++ +D E + +F
Sbjct: 245 QSNLPVMNSILDLYCRCGYLSEAKHYFHEMEDKDLITWNTLI-SELERSDSSEALLMFQR 303
Query: 103 MMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFY 162
+ V + ++ AC + G+Q+HG +F+ G ++N+ L +LI+ Y
Sbjct: 304 FESQG-----FVPNCYTFTSLVAACANIAALNCGQQLHGRIFRRGFNKNVELANALIDMY 358
Query: 163 GKFRCLEDADFVFSQL-KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTF 221
K + D+ VF ++ R N V WT+ ++ G+ + F +M I+ + F
Sbjct: 359 AKCGNIPDSQRVFGEIVDRRNLVSWTSMMIGYGSHGYGAEAVELFDKMVSSGIRPDRIVF 418
Query: 222 SSVLKAC--GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFEL 279
+VL AC G+ + G + + + G+ D + +VD+ G+ + +A + E
Sbjct: 419 MAVLSACRHAGLVEKGL--KYFNVMESEYGINPDRDIYNCVVDLLGRAGKIGEAYELVER 476
Query: 280 IVDKKNIASWNAML 293
+ K + ++W A+L
Sbjct: 477 MPFKPDESTWGAIL 490
>gi|410109989|gb|AFV61074.1| pentatricopeptide repeat-containing protein 81, partial [Lantana
urticoides]
Length = 394
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/289 (27%), Positives = 140/289 (48%), Gaps = 10/289 (3%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMP-LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRK 107
LN + + CG ++ A+++FD RD +W ++ Y++ + +F EM+K++
Sbjct: 101 LNASITAYAECGCIEDAKRVFDSSDGYRDLVTWNSILAAYLEHNLEEYGFNIFLEMVKQR 160
Query: 108 KGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF-- 165
L A+ + ++ AC LGK +HGL K G + ++ +L++ Y K
Sbjct: 161 -----LEMDAYTLSSIISACFEDTQQSLGKSLHGLAIKKGLDQVTQISNALVSMYLKSNN 215
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
R +EDA +F + + V W + + G F+ + + + + YTF++VL
Sbjct: 216 RNVEDALKIFEHINIKDLVSWNTILTGLSQNGLSENALRLFQNIHLDHLVTDQYTFAAVL 275
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
++C + + GRQ+H +VK G E +EYV L+ MY KC ++ DA FE + K+
Sbjct: 276 RSCSDLAT-LHLGRQIHVLVVKSGFEGNEYVASALIFMYSKCGIIEDARESFESSL-KET 333
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
+WN+++ Y ++G A YLM I++ ACS I
Sbjct: 334 SVTWNSIIFAYAQHGQGKIALDLFYLMTERRIKLDHVTFVAALTACSHI 382
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 74/259 (28%), Positives = 128/259 (49%), Gaps = 12/259 (4%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEM-MKRKKGHMLL 113
M+ C +++ A ++F M R+ SW +I GY ++ + + C+ LF M M+ +
Sbjct: 6 MYAKCRRVEDANKVFKYMRERNAVSWNALIGGYAEMGNLERCVMLFVGMEMEGVRVDDAT 65
Query: 114 VFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADF 173
P ++ + A + +L +Q+HG + K G ++ + I Y + C+EDA
Sbjct: 66 FAP--LLTLLYDAEL----YDLMRQLHGKIMKRGLEHENTVLNASITAYAECGCIEDAKR 119
Query: 174 VF-SQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVD 232
VF S + V W + + FN F EM ++R++ ++YT SS++ AC D
Sbjct: 120 VFDSSDGYRDLVTWNSILAAYLEHNLEEYGFNIFLEMVKQRLEMDAYTLSSIISACFE-D 178
Query: 233 DDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKC--RLLRDAERVFELIVDKKNIASWN 290
+ G+ +H +K GL+ + LV MY K R + DA ++FE I + K++ SWN
Sbjct: 179 TQQSLGKSLHGLAIKKGLDQVTQISNALVSMYLKSNNRNVEDALKIFEHI-NIKDLVSWN 237
Query: 291 AMLVGYIRNGLYVEATKFL 309
+L G +NGL A +
Sbjct: 238 TILTGLSQNGLSENALRLF 256
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 73/145 (50%), Gaps = 1/145 (0%)
Query: 157 SLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKK 216
+L + Y K R +EDA+ VF ++ N V W A I G+ + F M E ++
Sbjct: 2 ALFDMYAKCRRVEDANKVFKYMRERNAVSWNALIGGYAEMGNLERCVMLFVGMEMEGVRV 61
Query: 217 NSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERV 276
+ TF+ +L + + RQ+H I+K GLE + V + Y +C + DA+RV
Sbjct: 62 DDATFAPLLTLLYDAEL-YDLMRQLHGKIMKRGLEHENTVLNASITAYAECGCIEDAKRV 120
Query: 277 FELIVDKKNIASWNAMLVGYIRNGL 301
F+ +++ +WN++L Y+ + L
Sbjct: 121 FDSSDGYRDLVTWNSILAAYLEHNL 145
>gi|302790816|ref|XP_002977175.1| hypothetical protein SELMODRAFT_106630 [Selaginella moellendorffii]
gi|300155151|gb|EFJ21784.1| hypothetical protein SELMODRAFT_106630 [Selaginella moellendorffii]
Length = 806
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 149/310 (48%), Gaps = 8/310 (2%)
Query: 28 GAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGY 87
G ++ + I+ ++ +L LN L+ M+V CG+LD A ++F +MP R+ SW MI
Sbjct: 267 GGIQIHDKIQSEIH-GTRVLVLNALISMYVRCGKLDEALRVFADMPHRNVVSWTSMIAAV 325
Query: 88 VDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLG 147
Y + LF M+ + + +V + ++ G+++H + G
Sbjct: 326 AQSGHYSFAVKLFDGMIAEGINPNEKTYAS--VVSAIAHLGRDAILDRGRKIHSQITASG 383
Query: 148 SSRNISLTGSLINFYGKFRCLEDADFVF-SQLKRHNTVV-WTAKIVNNCREGHFHQVFND 205
+ + SLIN Y + L +A VF S L+ TVV +T I GH Q
Sbjct: 384 IDADPIVQNSLINMYARSGLLAEAREVFDSILENSKTVVSFTTMIAAYAHNGHPRQALEI 443
Query: 206 FKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLE-SDEYVQCGLVDMY 264
F+EM + N TF++VL AC + D + G +H +++ GL+ SD + LVDMY
Sbjct: 444 FREMTARGVAPNEITFATVLAACVAIGDLAS-GAWIHERMIESGLDSSDPFAYNSLVDMY 502
Query: 265 GKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLI 324
KC L A RVFE + K++ +W ++ +++G A M SGI + +
Sbjct: 503 AKCGDLGFAARVFE-TMKTKDLVAWTTIIAANVQSGNNRAALDLYDRMLQSGIHPDIATL 561
Query: 325 NDLRIACSSI 334
+ L +AC+++
Sbjct: 562 STLLVACANL 571
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 74/286 (25%), Positives = 128/286 (44%), Gaps = 10/286 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ CG++D A FD+ W ++ ++ I LF +M + +
Sbjct: 191 LVTMYAQCGRIDLAMAAFDDNRELGTAPWNAIMSALAGAGHHRRAIELFFQMEQHQCSDR 250
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
L AC ++ G Q+H + + + +LI+ Y + L++A
Sbjct: 251 -------SCAIALGACAAAGHLRGGIQIHDKIQSEIHGTRVLVLNALISMYVRCGKLDEA 303
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
VF+ + N V WT+ I + GH+ F M E I N T++SV+ A +
Sbjct: 304 LRVFADMPHRNVVSWTSMIAAVAQSGHYSFAVKLFDGMIAEGINPNEKTYASVVSAIAHL 363
Query: 232 DDDG--NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD-KKNIAS 288
D + GR++H+ I G+++D VQ L++MY + LL +A VF+ I++ K + S
Sbjct: 364 GRDAILDRGRKIHSQITASGIDADPIVQNSLINMYARSGLLAEAREVFDSILENSKTVVS 423
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
+ M+ Y NG +A + M A G+ E + AC +I
Sbjct: 424 FTTMIAAYAHNGHPRQALEIFREMTARGVAPNEITFATVLAACVAI 469
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/246 (21%), Positives = 108/246 (43%), Gaps = 9/246 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ CG L A ++F+ M +D +W +I V + + + L+ M++
Sbjct: 496 NSLVDMYAKCGDLGFAARVFETMKTKDLVAWTTIIAANVQSGNNRAALDLYDRMLQSG-- 553
Query: 110 HMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+ P + +L AC ++ +G+++H + ++ +L Y K L
Sbjct: 554 ----IHPDIATLSTLLVACANLGDLAMGEKIHRQALRSKLEQDAHFQNALAAMYAKCGSL 609
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
E A ++ + + + WT+ + + ++G + EM E ++ N TF VL +C
Sbjct: 610 EKATRLYRRCRGSDVATWTSMLAAHSQQGLASVALELYAEMESEGVRPNEVTFIPVLISC 669
Query: 229 GGVDDDGNCGRQMHANIVKIGLE-SDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
H+ G + S E+ C +VD+ G+ LRDAE + + + +
Sbjct: 670 SQAGLVAEGREFFHSITSDYGSQPSAEHFGC-MVDVLGRAGKLRDAEELLDSMPFYPDEI 728
Query: 288 SWNAML 293
+W ++L
Sbjct: 729 AWQSLL 734
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 75/317 (23%), Positives = 126/317 (39%), Gaps = 25/317 (7%)
Query: 12 MYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDE 71
+Y L+++C Q+ + HI R + LL + M+ C DTA LFD
Sbjct: 52 LYANLLRQCGNQRALDHGRRVHAHIVSRRLARNALLG-ELVFQMYARCRCFDTAIALFDA 110
Query: 72 MPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTM 131
MP R W V++ ++ ++ + L+ M F W IV AC
Sbjct: 111 MPDRRPFCWNVLMKEFLAADRPRDTLELYRRMSVENTQPSACGF-MWAIV----ACGRIK 165
Query: 132 NMELGKQVHGLLFKLGSSRNI--SLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAK 189
++ G+ +H +++ + R I S+ +L+ Y + ++ A F + T W A
Sbjct: 166 DLAQGRSIH---YRVATGRGINSSIQSALVTMYAQCGRIDLAMAAFDDNRELGTAPWNAI 222
Query: 190 IVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC-----GGVDDDGNCGRQMHAN 244
+ GH + F +M + + S + A GG+ ++H
Sbjct: 223 MSALAGAGHHRRAIELFFQMEQHQCSDRSCAIALGACAAAGHLRGGIQIHDKIQSEIHGT 282
Query: 245 IVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVE 304
V V L+ MY +C L +A RVF + +N+ SW +M+ ++G Y
Sbjct: 283 RV--------LVLNALISMYVRCGKLDEALRVFA-DMPHRNVVSWTSMIAAVAQSGHYSF 333
Query: 305 ATKFLYLMKASGIQIQE 321
A K M A GI E
Sbjct: 334 AVKLFDGMIAEGINPNE 350
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/158 (19%), Positives = 62/158 (39%), Gaps = 6/158 (3%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R ++ F N L M+ CG L+ A +L+ D +W M+ + +
Sbjct: 586 RSKLEQDAHFQNALAAMYAKCGSLEKATRLYRRCRGSDVATWTSMLAAHSQQGLASVALE 645
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQ-VHGLLFKLGSSRNISLTGS 157
L+AEM + F +I C V G++ H + GS + G
Sbjct: 646 LYAEMESEGVRPNEVTFIPVLISCSQAGLVAE-----GREFFHSITSDYGSQPSAEHFGC 700
Query: 158 LINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCR 195
+++ G+ L DA+ + + + + ++++C+
Sbjct: 701 MVDVLGRAGKLRDAEELLDSMPFYPDEIAWQSLLSSCK 738
>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 871
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 88/289 (30%), Positives = 138/289 (47%), Gaps = 14/289 (4%)
Query: 48 FLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRK 107
F N LL M+ CG LD+A+ +F EM R S+ MI GY E + LF EM +
Sbjct: 333 FCNTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEG 392
Query: 108 KGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166
+ P + + VL C ++ GK+VH + + +I ++ +L++ Y K
Sbjct: 393 ------ISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKENDMGFDIFVSNALMDMYAKCG 446
Query: 167 CLEDADFVFSQLKRHNTVVWTAKI---VNNCREGHFHQVFNDFKEMGRERIKKNSYTFSS 223
+ +A+ VFS+++ + + W I NC +FN + +R + T +
Sbjct: 447 SMREAELVFSEMRVKDIISWNTVIGGYSKNCYANEALSLFNLL--LVEKRFSPDERTVAC 504
Query: 224 VLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
VL AC + + GR++H I++ G SD +V LVDMY KC L A +F+ I
Sbjct: 505 VLPACASL-SAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLARLLFDDIT-S 562
Query: 284 KNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
K++ SW M+ GY +G EA M+ +GI+ E L ACS
Sbjct: 563 KDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEPDEISFVSLLYACS 611
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 90/292 (30%), Positives = 146/292 (50%), Gaps = 16/292 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ ++ ++D+AR++FDEM RD SW +I GYV ++ +++F +M+
Sbjct: 234 NSLVAFYLKNHRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLFSG-- 291
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ IV V C + + LG+ VH K SR +L++ Y K L+
Sbjct: 292 ---IEIDLATIVSVFAGCADSRLISLGRAVHCFGVKACFSREDRFCNTLLDMYSKCGDLD 348
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A VF ++ + V +T+ I REG + F+EM E I + YT ++VL C
Sbjct: 349 SAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCA 408
Query: 230 G---VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVF-ELIVDKKN 285
+D+ G+++H I + + D +V L+DMY KC +R+AE VF E+ V K+
Sbjct: 409 RNRLLDE----GKRVHEWIKENDMGFDIFVSNALMDMYAKCGSMREAELVFSEMRV--KD 462
Query: 286 IASWNAMLVGYIRNGLYVEA-TKFLYLMKASGIQIQESLINDLRIACSSISA 336
I SWN ++ GY +N EA + F L+ E + + AC+S+SA
Sbjct: 463 IISWNTVIGGYSKNCYANEALSLFNLLLVEKRFSPDERTVACVLPACASLSA 514
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 73/272 (26%), Positives = 124/272 (45%), Gaps = 13/272 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
++L LM+ +CG L A ++FD++ + W +++ D+ I LF +MM
Sbjct: 133 SKLALMYTNCGDLKEASRVFDQVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSG-- 190
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ ++ CV K+ ++ G+Q+HG + K G S+ SL+ FY K ++
Sbjct: 191 ---VEMDSYTFSCVSKSFSSLRSVNGGEQLHGYILKSGFGERNSVGNSLVAFYLKNHRVD 247
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A VF ++ + + W + I G + + F +M I+ + T SV C
Sbjct: 248 SARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCA 307
Query: 230 GVDDDG---NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
D + GR +H VK ++ L+DMY KC L A+ VF + +++
Sbjct: 308 ----DSRLISLGRAVHCFGVKACFSREDRFCNTLLDMYSKCGDLDSAKVVFREM-SGRSV 362
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
S+ +M+ GY R GL EA K M+ GI
Sbjct: 363 VSYTSMIAGYAREGLAGEAVKLFEEMEEEGIS 394
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 109/248 (43%), Gaps = 8/248 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ CG + A +F EM ++D SW +I GY E ++LF ++ K+
Sbjct: 436 NALMDMYAKCGSMREAELVFSEMRVKDIISWNTVIGGYSKNCYANEALSLFNLLLVEKR- 494
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ CVL AC + G+++HG + + G + + SL++ Y K L
Sbjct: 495 ---FSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALL 551
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC- 228
A +F + + V WT I G + F +M + I+ + +F S+L AC
Sbjct: 552 LARLLFDDITSKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEPDEISFVSLLYACS 611
Query: 229 -GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
G+ D+G + + KI + Y C +VDM + L A R E + +
Sbjct: 612 HSGLVDEGWRFFNIMRHECKIEPTVEHYA-C-IVDMLARTGNLSKAYRFIENMPIPPDAT 669
Query: 288 SWNAMLVG 295
W A+L G
Sbjct: 670 IWGALLCG 677
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 75/272 (27%), Positives = 121/272 (44%), Gaps = 9/272 (3%)
Query: 68 LFDEMPLRDFNSWAVMIVGY-VDVADYQECITLFAEMMKRKKGHMLL-VFPAWII----V 121
+F+ LR + A I + V D + F E K LL V W I +
Sbjct: 38 IFNRASLRTVSDRADSITTFDRSVTDANTQLRRFCESGNLKNAVKLLHVSGKWDIDPRTL 97
Query: 122 C-VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
C VL+ C + +++ GK+V + G + +L L Y L++A VF Q+K
Sbjct: 98 CSVLQLCADSKSLKDGKEVDNFIRGNGFVLDSNLGSKLALMYTNCGDLKEASRVFDQVKI 157
Query: 181 HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQ 240
+ W + + G F FK+M ++ +SYTFS V K+ + N G Q
Sbjct: 158 EKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSV-NGGEQ 216
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
+H I+K G V LV Y K + A +VF+ + + +++ SWN+++ GY+ NG
Sbjct: 217 LHGYILKSGFGERNSVGNSLVAFYLKNHRVDSARKVFDEMTE-RDVISWNSIINGYVSNG 275
Query: 301 LYVEATKFLYLMKASGIQIQESLINDLRIACS 332
L + M SGI+I + I + C+
Sbjct: 276 LAEKGLSVFVQMLFSGIEIDLATIVSVFAGCA 307
>gi|302787038|ref|XP_002975289.1| hypothetical protein SELMODRAFT_10002 [Selaginella moellendorffii]
gi|300156863|gb|EFJ23490.1| hypothetical protein SELMODRAFT_10002 [Selaginella moellendorffii]
Length = 730
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 82/269 (30%), Positives = 122/269 (45%), Gaps = 16/269 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N LL M+ CG LD AR +FD + R+ SW MI Y + + +F +M
Sbjct: 219 NTLLNMYARCGSLDDARLVFDSITSRNIVSWTSMIAAYAQFDRFHDAYEVFQKMG----- 273
Query: 110 HMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLG--SSRNISLTGSLINFYGKFR 166
V P + + +L AC ++ +++H L+ G + +++ LIN Y K
Sbjct: 274 ----VAPNEVTFITILGACAEARALKQAREIHSLVLTSGILEKQQLTVGNGLINTYAKCG 329
Query: 167 CLEDADFVFSQLK--RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
L DA VF + N V WT+ I GH + F M E I N TF +V
Sbjct: 330 SLSDAKTVFESMATAERNVVTWTSIIAACGLCGHPREALALFHRMELEGIPANEITFGTV 389
Query: 225 LKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
L AC + R +H IV G + D V GL++M+GKC +L DA +FE + +
Sbjct: 390 LSACADLGSTREA-RYLHGLIVSGGYDRDTVVCNGLINMFGKCGMLEDARAIFERM-RSR 447
Query: 285 NIASWNAMLVGYIRNGLYVEATKFLYLMK 313
N+ +W ML YI+ +A M+
Sbjct: 448 NLVTWTGMLGAYIQQQEIRQAVSLFQQME 476
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 82/300 (27%), Positives = 142/300 (47%), Gaps = 12/300 (4%)
Query: 42 IKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFA 101
++ L N L+ M+ +CG L A++ FD M R+ SW +I + Y+E + LF
Sbjct: 110 VELELNLANSLISMYSNCGSLVDAKRFFDGMNRRNVVSWNCIIAAFSGHGHYREAVDLFY 169
Query: 102 EMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINF 161
EM K+ + F V V AC ++ G+++H ++S+ +L+N
Sbjct: 170 EMEKQGFKPDRVSF-----VSVFSACSILEDLSQGRRIHARFCDGRMKLDVSIGNTLLNM 224
Query: 162 YGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTF 221
Y + L+DA VF + N V WT+ I + FH + F++MG + N TF
Sbjct: 225 YARCGSLDDARLVFDSITSRNIVSWTSMIAAYAQFDRFHDAYEVFQKMG---VAPNEVTF 281
Query: 222 SSVLKACGGVDDDGNCGRQMHANIVKIG-LESDEY-VQCGLVDMYGKCRLLRDAERVFE- 278
++L AC R++H+ ++ G LE + V GL++ Y KC L DA+ VFE
Sbjct: 282 ITILGACAEARALKQA-REIHSLVLTSGILEKQQLTVGNGLINTYAKCGSLSDAKTVFES 340
Query: 279 LIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASK 338
+ ++N+ +W +++ G EA + M+ GI E + AC+ + +++
Sbjct: 341 MATAERNVVTWTSIIAACGLCGHPREALALFHRMELEGIPANEITFGTVLSACADLGSTR 400
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 86/301 (28%), Positives = 135/301 (44%), Gaps = 15/301 (4%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R I L N L+ M+ CG L AR FD + ++ SW+++I Y +E I
Sbjct: 9 RTGIDSETLLGNTLVQMYGKCGNLAEARAAFDGIAEKNVFSWSIIIGLYSRHRLSREAIE 68
Query: 99 LFAEMMKRKKGHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGS 157
LF H + V P + + L AC +E GK++H + ++L S
Sbjct: 69 LF---------HAMDVRPNCVTFINTLGACSSAEFLETGKKIHAQIVAGEVELELNLANS 119
Query: 158 LINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKN 217
LI+ Y L DA F + R N V W I GH+ + + F EM ++ K +
Sbjct: 120 LISMYSNCGSLVDAKRFFDGMNRRNVVSWNCIIAAFSGHGHYREAVDLFYEMEKQGFKPD 179
Query: 218 SYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVF 277
+F SV AC + +D + GR++HA ++ D + L++MY +C L DA VF
Sbjct: 180 RVSFVSVFSAC-SILEDLSQGRRIHARFCDGRMKLDVSIGNTLLNMYARCGSLDDARLVF 238
Query: 278 ELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISAS 337
+ I +NI SW +M+ Y + + +A + M G+ E + AC+ A
Sbjct: 239 DSIT-SRNIVSWTSMIAAYAQFDRFHDAYEVFQKM---GVAPNEVTFITILGACAEARAL 294
Query: 338 K 338
K
Sbjct: 295 K 295
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 81/328 (24%), Positives = 135/328 (41%), Gaps = 47/328 (14%)
Query: 43 KPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFN--SWAVMIVGYVDVADYQECITLF 100
K L N L+ + CG L A+ +F+ M + N +W +I +E + LF
Sbjct: 312 KQQLTVGNGLINTYAKCGSLSDAKTVFESMATAERNVVTWTSIIAACGLCGHPREALALF 371
Query: 101 AEMMKRKKGHMLLVFPAWIIV--CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
M L PA I VL AC + + +HGL+ G R+ + L
Sbjct: 372 HRME-------LEGIPANEITFGTVLSACADLGSTREARYLHGLIVSGGYDRDTVVCNGL 424
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEM--------- 209
IN +GK LEDA +F +++ N V WT + ++ Q + F++M
Sbjct: 425 INMFGKCGMLEDARAIFERMRSRNLVTWTGMLGAYIQQQEIRQAVSLFQQMERISYKDVM 484
Query: 210 -------------------------GRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHAN 244
G E + + TF ++L AC + G + ++
Sbjct: 485 AWTTMVAAYAQAGYADEALKLYARMGLEGVAPDEITFVNLLHACSRMGAKKE-GWTIRSH 543
Query: 245 IVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVE 304
I++ GL S + GLV YG C A+ VFE + ++ + A+WNA + ++G Y E
Sbjct: 544 ILERGLPSSRVLGNGLVCFYGACGTWLQAKMVFENLAERDS-AAWNAAIGVSGQHGFYDE 602
Query: 305 ATKFLYLMKASGIQIQESLINDLRIACS 332
+ + M G++ E ++ +CS
Sbjct: 603 SLRLFERMVLEGMEPDEITFTNVLFSCS 630
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 87/196 (44%), Gaps = 5/196 (2%)
Query: 137 KQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCRE 196
+++H L + G L +L+ YGK L +A F + N W+ I R
Sbjct: 1 RRIHSELARTGIDSETLLGNTLVQMYGKCGNLAEARAAFDGIAEKNVFSWSIIIGLYSRH 60
Query: 197 GHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYV 256
+ F M ++ N TF + L AC + G+++HA IV +E + +
Sbjct: 61 RLSREAIELFHAMD---VRPNCVTFINTLGACSSAEFL-ETGKKIHAQIVAGEVELELNL 116
Query: 257 QCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASG 316
L+ MY C L DA+R F+ + +++N+ SWN ++ + +G Y EA Y M+ G
Sbjct: 117 ANSLISMYSNCGSLVDAKRFFDGM-NRRNVVSWNCIIAAFSGHGHYREAVDLFYEMEKQG 175
Query: 317 IQIQESLINDLRIACS 332
+ + ACS
Sbjct: 176 FKPDRVSFVSVFSACS 191
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 61/276 (22%), Positives = 112/276 (40%), Gaps = 31/276 (11%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M CG L+ AR +F+ M R+ +W M+ Y+ + ++ ++LF +M +
Sbjct: 422 NGLINMFGKCGMLEDARAIFERMRSRNLVTWTGMLGAYIQQQEIRQAVSLFQQMERISYK 481
Query: 110 HMLL----------------------------VFPAWI-IVCVLKACVCTMNMELGKQVH 140
++ V P I V +L AC + G +
Sbjct: 482 DVMAWTTMVAAYAQAGYADEALKLYARMGLEGVAPDEITFVNLLHACSRMGAKKEGWTIR 541
Query: 141 GLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFH 200
+ + G + L L+ FYG A VF L ++ W A I + + G +
Sbjct: 542 SHILERGLPSSRVLGNGLVCFYGACGTWLQAKMVFENLAERDSAAWNAAIGVSGQHGFYD 601
Query: 201 QVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESD-EYVQCG 259
+ F+ M E ++ + TF++VL +C + R G+E + E+ C
Sbjct: 602 ESLRLFERMVLEGMEPDEITFTNVLFSCSHSGEIERAWRWFLVMRGDHGMEPNVEHWGC- 660
Query: 260 LVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
L D++G+ + +AER+ + + +W +L G
Sbjct: 661 LADLFGRLGWIDEAERLVSFLPRTRASIAWTTLLSG 696
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 53/95 (55%), Gaps = 4/95 (4%)
Query: 239 RQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIR 298
R++H+ + + G++S+ + LV MYGKC L +A F+ I + KN+ SW+ ++ Y R
Sbjct: 1 RRIHSELARTGIDSETLLGNTLVQMYGKCGNLAEARAAFDGIAE-KNVFSWSIIIGLYSR 59
Query: 299 NGLYVEATKFLYLMKASGIQIQESLINDLRIACSS 333
+ L EA + + M + + IN L ACSS
Sbjct: 60 HRLSREAIELFHAMDVRPNCV--TFINTLG-ACSS 91
>gi|147860004|emb|CAN81045.1| hypothetical protein VITISV_006763 [Vitis vinifera]
Length = 1321
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 138/285 (48%), Gaps = 6/285 (2%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ CG++D+A +++D+M D + +I Y + + +F ++ G+M
Sbjct: 154 LIDMYAKCGEVDSAVRVYDKMTSLDAATCNCLISAYARNGFFVQAFQVFMQI-----GNM 208
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+ +L C ++ GKQ+H + K+ ++ +L+ Y K +E+A
Sbjct: 209 GTRPNHYTYSTMLAVCGTISAIQEGKQLHAHVVKMQYLSETAVGNALLTLYSKCGMMEEA 268
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
+ VF L++ N + WTA I + G F + F M I+ N +TFS VL +CG V
Sbjct: 269 EIVFESLRQRNIISWTASINGFYQHGDFKKALKQFSMMRESGIEPNEFTFSIVLASCGCV 328
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
D + GR H ++K G+ S +V ++DMY + +AE+ F+ + + SWNA
Sbjct: 329 KDFID-GRMFHTQVIKKGMASGVFVGTAIIDMYSGLGEMDEAEKQFKQMGRAASNVSWNA 387
Query: 292 MLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
++ GY+ N +A + M + E +++ ACSS +
Sbjct: 388 LIAGYVLNEKIEKAMEAFCRMVKEDVACNEFTYSNIFKACSSFPS 432
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 73/285 (25%), Positives = 134/285 (47%), Gaps = 10/285 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N LL ++ CG ++ A +F+ + R+ SW I G+ D+++ + F+ M R+ G
Sbjct: 253 NALLTLYSKCGMMEEAEIVFESLRQRNIISWTASINGFYQHGDFKKALKQFS--MMRESG 310
Query: 110 HMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+ P + VL +C C + G+ H + K G + + + ++I+ Y +
Sbjct: 311 ----IEPNEFTFSIVLASCGCVKDFIDGRMFHTQVIKKGMASGVFVGTAIIDMYSGLGEM 366
Query: 169 EDADFVFSQLKR-HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
++A+ F Q+ R + V W A I + F M +E + N +T+S++ KA
Sbjct: 367 DEAEKQFKQMGRAASNVSWNALIAGYVLNEKIEKAMEAFCRMVKEDVACNEFTYSNIFKA 426
Query: 228 CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
C Q+H+ ++K +ES+ +V L++ Y +C L +A +VF I D ++
Sbjct: 427 CSSFPSLATT-VQIHSRLIKSNVESNLHVASSLIEAYTQCGSLENAVQVFTQISD-ADVV 484
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
SWN+++ Y +NG +A L M G + + ACS
Sbjct: 485 SWNSIIKAYSQNGDPWKAIFLLRKMIEEGNKPTSXTFLTVLSACS 529
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 94/183 (51%), Gaps = 2/183 (1%)
Query: 136 GKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCR 195
G+ +H L +G +R L++FY + L +A +F ++ N W R
Sbjct: 822 GRALHAHLVIIGLARLTYFAAKLMSFYTECGQLSNARKLFDKIPNTNIRRWIVLTGACAR 881
Query: 196 EGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEY 255
G + + + F EM +E ++ N + S+LKACG + D G MH I+K ESD Y
Sbjct: 882 RGFYEEALSAFSEMQKEGLRPNQFVLPSILKACGHLSDR-RTGENMHTVILKNSFESDAY 940
Query: 256 VQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKAS 315
+ L+ MY KC + A RVF+ IVD K++ NAM+ GY ++G EA + M+ +
Sbjct: 941 IISALIYMYSKCGHVEKACRVFDWIVD-KDLVVMNAMVSGYAQHGFVHEALBLVQKMQQA 999
Query: 316 GIQ 318
G++
Sbjct: 1000 GVK 1002
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 116/225 (51%), Gaps = 8/225 (3%)
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
H VF A + C + CV ELG++ H + K+G + + SLI+ Y K ++
Sbjct: 112 HRQYVFSA-LSFCGREGCV-----ELGRRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVD 165
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A V+ ++ + I R G F Q F F ++G + N YT+S++L CG
Sbjct: 166 SAVRVYDKMTSLDAATCNCLISAYARNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVCG 225
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ G+Q+HA++VK+ S+ V L+ +Y KC ++ +AE VFE + ++NI SW
Sbjct: 226 TISAIQE-GKQLHAHVVKMQYLSETAVGNALLTLYSKCGMMEEAEIVFESL-RQRNIISW 283
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
A + G+ ++G + +A K +M+ SGI+ E + + +C +
Sbjct: 284 TASINGFYQHGDFKKALKQFSMMRESGIEPNEFTFSIVLASCGCV 328
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/284 (24%), Positives = 125/284 (44%), Gaps = 38/284 (13%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
++ L+ M+ CG ++ A ++FD + +D M+ GY E + L +M +
Sbjct: 942 ISALIYMYSKCGHVEKACRVFDWIVDKDLVVMNAMVSGYAQHGFVHEALBLVQKMQQAG- 1000
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+K V + N + ++G +S L+ G
Sbjct: 1001 ---------------VKPNVVSWNTLIAG-----FSQVGDKSMVSEVFRLMTANGV---- 1036
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+ V WT+ I + H H+ F+ FKEM + +S T SS+L AC
Sbjct: 1037 -----------EPDVVSWTSVISGFVQNFHNHEGFDAFKEMLDQGFCPSSVTISSLLPAC 1085
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
V + + G+++H + IG+E D YV+ LVDMY KC + +A+ +F ++ ++ N +
Sbjct: 1086 TNVANLRH-GKEIHGYAMVIGVEKDVYVRSALVDMYAKCGYISEAKILFYMMPER-NTVT 1143
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
WN+++ GY +G EA + M+ S ++ + ACS
Sbjct: 1144 WNSLIFGYANHGYCNEAIELFNQMEESDTKLDHLTFTAVLNACS 1187
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 69/293 (23%), Positives = 124/293 (42%), Gaps = 38/293 (12%)
Query: 31 ELLNHIRK--RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLR----DFNSWAVMI 84
E LB ++K + +KP ++ N L+ G ++F M D SW +I
Sbjct: 988 EALBLVQKMQQAGVKPNVVSWNTLIAGFSQVGDKSMVSEVFRLMTANGVEPDVVSWTSVI 1047
Query: 85 VGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLF 144
G+V E F EM+ + + I +L AC N+ GK++HG
Sbjct: 1048 SGFVQNFHNHEGFDAFKEMLDQG-----FCPSSVTISSLLPACTNVANLRHGKEIHGYAM 1102
Query: 145 KLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFN 204
+G +++ + +L++ Y K + +A +F + NTV W + I G+ ++
Sbjct: 1103 VIGVEKDVYVRSALVDMYAKCGYISEAKILFYMMPERNTVTWNSLIFGYANHGYCNEAIE 1162
Query: 205 DFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIG------------LES 252
F +M K + TF++VL AC HA +V++G +E
Sbjct: 1163 LFNQMEESDTKLDHLTFTAVLNACS------------HAGMVELGESLFXKMQEKYRIEP 1210
Query: 253 D-EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVE 304
E+ C +VD+ G+ L +A + + + + + W A+L G RN +E
Sbjct: 1211 RLEHYAC-MVDLLGRAGKLSEAYDLIKAMPVEPDKFVWGALL-GACRNHGNIE 1261
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 98/220 (44%), Gaps = 8/220 (3%)
Query: 48 FLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRK 107
F +L+ + CGQL AR+LFD++P + W V+ Y+E ++ F+EM K
Sbjct: 840 FAAKLMSFYTECGQLSNARKLFDKIPNTNIRRWIVLTGACARRGFYEEALSAFSEMQKEG 899
Query: 108 KGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
V P+ +LKAC + G+ +H ++ K + + +LI Y K
Sbjct: 900 LRPNQFVLPS-----ILKACGHLSDRRTGENMHTVILKNSFESDAYIISALIYMYSKCGH 954
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
+E A VF + + VV A + + G H+ B ++M + +K N ++++++
Sbjct: 955 VEKACRVFDWIVDKDLVVMNAMVSGYAQHGFVHEALBLVQKMQQAGVKPNVVSWNTLIAG 1014
Query: 228 CGGVDDDGNCG---RQMHANIVKIGLESDEYVQCGLVDMY 264
V D R M AN V+ + S V G V +
Sbjct: 1015 FSQVGDKSMVSEVFRLMTANGVEPDVVSWTSVISGFVQNF 1054
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 104/246 (42%), Gaps = 14/246 (5%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFN-SWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLL 113
M+ G++D A + F +M N SW +I GYV ++ + F M+K
Sbjct: 359 MYSGLGEMDEAEKQFKQMGRAASNVSWNALIAGYVLNEKIEKAMEAFCRMVKEDVACNEF 418
Query: 114 VFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADF 173
+ + KAC ++ Q+H L K N+ + SLI Y + LE+A
Sbjct: 419 TYSN-----IFKACSSFPSLATTVQIHSRLIKSNVESNLHVASSLIEAYTQCGSLENAVQ 473
Query: 174 VFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC---GG 230
VF+Q+ + V W + I + G + ++M E K S TF +VL AC G
Sbjct: 474 VFTQISDADVVSWNSIIKAYSQNGDPWKAIFLLRKMIEEGNKPTSXTFLTVLSACSHSGL 533
Query: 231 VDDDGNCGRQMHANIVKIGLESDEYVQCG-LVDMYGKCRLLRDAERVFELIVDKKNIASW 289
V + G++ ++V+ E C +VD+ G+ L +A + + K + W
Sbjct: 534 VQE----GQEFFKSMVQDYSIQPEETHCSCMVDILGRAGQLENALDFIKKLTMKPTASIW 589
Query: 290 NAMLVG 295
+L
Sbjct: 590 RPLLAA 595
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 102/231 (44%), Gaps = 23/231 (9%)
Query: 117 AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFS 176
+W +L C+ ++L K ++ ++ G + G+++ G + L +A +F
Sbjct: 11 SWPTCSLLPGCIA---VDLQKNINPIISASGPYKGCMSKGNVV---GGWVDLNNACILFE 64
Query: 177 QLKRHNTVVWTAKIVNNCRE---------GHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
+ + V T + C + G F + E G Y FS+ L
Sbjct: 65 KTPKRIGVSITESHRSGCTDDPEEGVKEAGFFTRNETPHVEFGG-GFPHRQYVFSA-LSF 122
Query: 228 CGGVDDDG--NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
CG +G GR+ H +VKIGL SDE+V L+DMY KC + A RV++ + +
Sbjct: 123 CG---REGCVELGRRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSAVRVYDKMTSL-D 178
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
A+ N ++ Y RNG +V+A + + G + + + C +ISA
Sbjct: 179 AATCNCLISAYARNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGTISA 229
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 1/98 (1%)
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYI 297
GR +HA++V IGL Y L+ Y +C L +A ++F+ I + NI W +
Sbjct: 822 GRALHAHLVIIGLARLTYFAAKLMSFYTECGQLSNARKLFDKIPNT-NIRRWIVLTGACA 880
Query: 298 RNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
R G Y EA M+ G++ + ++ + AC +S
Sbjct: 881 RRGFYEEALSAFSEMQKEGLRPNQFVLPSILKACGHLS 918
>gi|357509307|ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355499957|gb|AES81160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1092
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/296 (27%), Positives = 149/296 (50%), Gaps = 8/296 (2%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
++ +L+ ++V+ G + +R FD + ++ SW +I YV Y E + ++
Sbjct: 54 IVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRFGKYHEAMNCVNQLFS 113
Query: 106 R-KKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
GH+ F + +LKACV ++ GK+VH +FK+G ++ + SL++ Y +
Sbjct: 114 MCGGGHLRPDF--YTFPPILKACVSLVD---GKKVHCCVFKMGFEDDVFVAASLVHLYSR 168
Query: 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
+ L+ A VF + + W A I C+ G+ M E +K ++ T +S+
Sbjct: 169 YGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASI 228
Query: 225 LKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
L C DD N G +H +++K GL+SD +V L++MY K L+DA+ VF+ + + +
Sbjct: 229 LPVCAQSDDVIN-GVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQM-EVR 286
Query: 285 NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKIN 340
++ SWN+++ Y +N A +F M+ GI+ + L S +S +I+
Sbjct: 287 DLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRIS 342
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 103/206 (50%), Gaps = 9/206 (4%)
Query: 131 MNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKI 190
+N+ K++H LL G S+NI L+ LIN Y + + F + + N W + I
Sbjct: 33 VNVNATKKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSII 92
Query: 191 VNNCREGHFHQVFNDFKEM----GRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIV 246
R G +H+ N ++ G ++ + YTF +LKAC + D G+++H +
Sbjct: 93 SAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLVD----GKKVHCCVF 148
Query: 247 KIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEAT 306
K+G E D +V LV +Y + +L A +VF + + K++ SWNAM+ G+ +NG A
Sbjct: 149 KMGFEDDVFVAASLVHLYSRYGVLDVAHKVF-VDMPVKDVGSWNAMISGFCQNGNAAGAL 207
Query: 307 KFLYLMKASGIQIQESLINDLRIACS 332
L MK G+++ + + C+
Sbjct: 208 GVLNRMKGEGVKMDTITVASILPVCA 233
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 120/262 (45%), Gaps = 6/262 (2%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ ++ G LD A ++F +MP++D SW MI G+ + + + + R KG
Sbjct: 162 LVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGV----LNRMKGEG 217
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+ + + +L C + ++ G +H + K G ++ ++ +LIN Y KF L+DA
Sbjct: 218 VKM-DTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDA 276
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
VF Q++ + V W + I + FK M I+ + T S+ +
Sbjct: 277 QMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQL 336
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
D + I + L+ D + LV+MY K + A VF+ + +K+ SWN
Sbjct: 337 SDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQL-PRKDTISWNT 395
Query: 292 MLVGYIRNGLYVEATKFLYLMK 313
++ GY +NGL EA +M+
Sbjct: 396 LVTGYTQNGLASEAIDAYNMME 417
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 74/296 (25%), Positives = 130/296 (43%), Gaps = 22/296 (7%)
Query: 8 ITTDMYTCLIKECTFQK--DSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTA 65
I D+ T + F + D + +L + +R + ++ N L+ M+ G ++ A
Sbjct: 319 IRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCA 378
Query: 66 RQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK-----RKKGHMLLVFPAWII 120
+FD++P +D SW ++ GY E I + M + +G + + PA+
Sbjct: 379 HTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSH 438
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
V L+ G ++H L K ++ + LI+ YGK LEDA +F ++ R
Sbjct: 439 VGALQQ---------GMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPR 489
Query: 181 HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC---GGVDDDGNC 237
+V W A I + G + FK+M ER+K + TF S+L AC G VD+ C
Sbjct: 490 DTSVPWNAIIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKC 549
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
M + G++ +VD+ G+ L A + + + + + W A+L
Sbjct: 550 FDIMQK---EYGIKPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALL 602
>gi|296083841|emb|CBI24229.3| unnamed protein product [Vitis vinifera]
Length = 547
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 82/292 (28%), Positives = 147/292 (50%), Gaps = 16/292 (5%)
Query: 52 LLLMHVSCGQLDTARQLFD--EMPLRDFNSWAVMIVG------YVDVADYQECITLFAEM 103
L+ ++ SC +A+ +F E PL D W ++ +++ + ++ + LF EM
Sbjct: 44 LINLYFSCHLFQSAKLVFQTIENPL-DITLWNGLMAACTKNFIFIEGLEPEKALELFEEM 102
Query: 104 MKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYG 163
+ G + + V+ +C +++E GK++H L + G + + ++ +L++ YG
Sbjct: 103 --KVSG---FKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYG 157
Query: 164 KFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSS 223
K CLE A VF Q++R N V W + I +G F+ M E I+ T SS
Sbjct: 158 KCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSS 217
Query: 224 VLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
+L AC + G+ +H I++ +E+D +V L+D+Y KC + AE VF+ + K
Sbjct: 218 ILMACSR-SVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNM-PK 275
Query: 284 KNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
N+ SWN M+ GY++ G Y+EA M+ +G++ + ACS ++
Sbjct: 276 TNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLA 327
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 108/220 (49%), Gaps = 9/220 (4%)
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
++ +LK C+ + ++ GK +H + LG NI+L SLIN Y + A VF ++
Sbjct: 6 LLSLLKTCIDSKYLKQGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVFQTIE 65
Query: 180 RH-NTVVWTAKIVNNCREGHF------HQVFNDFKEMGRERIKKNSYTFSSVLKACGGVD 232
+ +W + + F + F+EM K +S T ++V+ +C +
Sbjct: 66 NPLDITLWNGLMAACTKNFIFIEGLEPEKALELFEEMKVSGFKPDSVTLTTVISSCARLL 125
Query: 233 DDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAM 292
D G+++H +V+ G D +V LVDMYGKC L A+ VFE I +KN+ SWN+M
Sbjct: 126 DLER-GKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQI-QRKNVVSWNSM 183
Query: 293 LVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+ GY G + M GI+ + ++ + +ACS
Sbjct: 184 IAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACS 223
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 101/253 (39%), Gaps = 70/253 (27%)
Query: 36 IRKRVNIKPTLLFLNRLLL-MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQ 94
IR RV +F+N L+ ++ CG + +A +F MP + SW VMI GYV V Y
Sbjct: 239 IRNRVEAD---IFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYL 295
Query: 95 ECITLFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNIS 153
E + +F +M RK G V P A VL AC +E GK++H
Sbjct: 296 EALVIFTDM--RKAG----VKPDAITFTSVLPACSQLAVLEKGKEIH------------- 336
Query: 154 LTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRER 213
+F+ N V+ F++M +
Sbjct: 337 ------------------NFIIESKLEINEVL--------------------FEKMQQSD 358
Query: 214 IKKNSYTFSSVLKAC---GGVDDDGNCGRQMHANIVKIGLESD-EYVQCGLVDMYGKCRL 269
K + TF ++L AC G VD+ QM I + G + E+ C L+D+ G+
Sbjct: 359 AKPDKVTFLAILSACSHAGLVDEGCYYFNQM---IAEYGFKPAVEHYSC-LIDLLGRVGR 414
Query: 270 LRDAERVFELIVD 282
LR+A + + D
Sbjct: 415 LREAYEILQRTPD 427
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 53/103 (51%), Gaps = 6/103 (5%)
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYI 297
G+ +H IV +GL+++ + L+++Y C L + A+ VF+ I + +I WN ++
Sbjct: 22 GKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVFQTIENPLDITLWNGLMAACT 81
Query: 298 RNGLYVE------ATKFLYLMKASGIQIQESLINDLRIACSSI 334
+N +++E A + MK SG + + + +C+ +
Sbjct: 82 KNFIFIEGLEPEKALELFEEMKVSGFKPDSVTLTTVISSCARL 124
>gi|147780302|emb|CAN70248.1| hypothetical protein VITISV_032008 [Vitis vinifera]
Length = 679
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/271 (27%), Positives = 138/271 (50%), Gaps = 7/271 (2%)
Query: 62 LDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIV 121
L + R++F+ MP RD SW +I G +++ + MM R+ G+ L ++ +
Sbjct: 146 LGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDAL-----MMVREMGNADLRPDSFTLS 200
Query: 122 CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH 181
VL +N+ GK++HG + G ++ + SLI+ Y K ++D+ VF L +H
Sbjct: 201 SVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQH 260
Query: 182 NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQM 241
+ + W + I + G F + F++M +IK N +FSS++ AC + + G+Q+
Sbjct: 261 DGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHL-TTLHLGKQL 319
Query: 242 HANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGL 301
H I++ + + ++ LVDMY KC +R A +F+ + + ++ SW AM++GY +G
Sbjct: 320 HGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKM-ELYDMVSWTAMIMGYALHGH 378
Query: 302 YVEATKFLYLMKASGIQIQESLINDLRIACS 332
+A M+ G++ + ACS
Sbjct: 379 AYDAISLFKRMEVEGVKPNYVAFMAVLTACS 409
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 117/253 (46%), Gaps = 19/253 (7%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+ L+ M+ C ++D + ++F +P D SW +I G V + E + F +M+ K
Sbjct: 235 SSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIK 294
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ F + ++ AC + LGKQ+HG + + N+ + +L++ Y K +
Sbjct: 295 PNHVSFSS-----IMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIASALVDMYAKCGNIR 349
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC- 228
A ++F +++ ++ V WTA I+ GH + + FK M E +K N F +VL AC
Sbjct: 350 TARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTACS 409
Query: 229 --GGVDDDGNCGRQMHANIVKI-GLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD--- 282
G VD+ M + I GLE + D+ G+ L +A +E I D
Sbjct: 410 HAGLVDEAWKYFNSMTQDYRIIPGLEH----YAAVADLLGRVGRLEEA---YEFISDMHI 462
Query: 283 KKNIASWNAMLVG 295
+ + W+ +L
Sbjct: 463 EPTGSVWSTLLAA 475
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 97/203 (47%), Gaps = 6/203 (2%)
Query: 138 QVHGLLFKLGSSRNISLTGSLINFYGKFR----CLEDADFVFSQLKRHNTVVWTAKIVNN 193
Q+ +L+++ + + + G + Y K L VF + + + V W I N
Sbjct: 112 QMSNILYQVNTYKKVFDEGKTSDVYSKKEKESYYLGSLRKVFEMMPKRDIVSWNTVISGN 171
Query: 194 CREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESD 253
+ G +EMG ++ +S+T SSVL + G+++H ++ G ++D
Sbjct: 172 AQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLK-GKEIHGYAIRNGYDAD 230
Query: 254 EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMK 313
++ L+DMY KC + D+ RVF ++ I SWN+++ G ++NG++ E KF M
Sbjct: 231 VFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGI-SWNSIIAGCVQNGMFDEGLKFFQQML 289
Query: 314 ASGIQIQESLINDLRIACSSISA 336
+ I+ + + AC+ ++
Sbjct: 290 IAKIKPNHVSFSSIMPACAHLTT 312
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 87/203 (42%), Gaps = 45/203 (22%)
Query: 114 VFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADF 173
VFP+ VLK+C ++ G+ VHG + +LG ++ +L+N Y KF LE+
Sbjct: 12 VFPS-----VLKSCTLMKDLRFGESVHGCIIRLGMGFDLYTCNALMNMYSKFWSLEEGGV 66
Query: 174 VFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMG-----RERIK-KNSYTFSSVL-K 226
Q F D K +G RE K NS+ L +
Sbjct: 67 ---------------------------QRFCDSKMLGGIPEPREIGKCSNSHDLPCELDE 99
Query: 227 ACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGK----CRLLRDAERVFELIVD 282
G+D +G+ QM + ++ + + D+Y K L +VFE++
Sbjct: 100 RVAGIDQNGDL-NQMSNILYQVNTYKKVFDEGKTSDVYSKKEKESYYLGSLRKVFEMM-P 157
Query: 283 KKNIASWNAMLVGYIRNGLYVEA 305
K++I SWN ++ G +NG++ +A
Sbjct: 158 KRDIVSWNTVISGNAQNGMHEDA 180
>gi|242077758|ref|XP_002448815.1| hypothetical protein SORBIDRAFT_06g033730 [Sorghum bicolor]
gi|241939998|gb|EES13143.1| hypothetical protein SORBIDRAFT_06g033730 [Sorghum bicolor]
Length = 913
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 86/288 (29%), Positives = 136/288 (47%), Gaps = 17/288 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ CG+LD A ++F M R+ SW ++VG++ D C+ L EM +
Sbjct: 256 NNLIDMYAKCGELDMAGEVFGGMRDRNVVSWTALMVGFLQHGDATGCLRLLGEMRAASEA 315
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ + LKAC T +M G +HGL + G + + SL+ Y K +
Sbjct: 316 ----APNEYTLSASLKACCVTEDMGAGVGIHGLCVRTGYEEHYVVASSLVLLYSKGGRIG 371
Query: 170 DADFVF--SQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMG------RERIKKNSYTF 221
DA VF + L R W A I GH F+EM ++ + + +TF
Sbjct: 372 DARRVFDCAGLGR-GLATWNAMISGYAHAGHGRDALLVFREMRRRRRRHEDQHQPDEFTF 430
Query: 222 SSVLKACGGVDDDGNCGRQMHANIVKIGLE--SDEYVQCGLVDMYGKCRLLRDAERVFEL 279
+S+LKACGG+ G Q+HA + G S+ + LVDMY KC L A +VFE
Sbjct: 431 ASLLKACGGLGAPRE-GAQVHAAMAASGFSTASNAILAGALVDMYVKCGRLPVAMQVFER 489
Query: 280 IVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDL 327
+ ++KN W ++VG+ + G +EA + SG + +++ +
Sbjct: 490 L-ERKNAIQWTTVVVGHAQEGQVMEALELFRRFWRSGARADAHVLSSI 536
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 96/323 (29%), Positives = 154/323 (47%), Gaps = 13/323 (4%)
Query: 17 IKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL-R 75
+K C +D GA ++ + R + + + L+L++ G++ AR++FD L R
Sbjct: 326 LKACCVTED-MGAGVGIHGLCVRTGYEEHYVVASSLVLLYSKGGRIGDARRVFDCAGLGR 384
Query: 76 DFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTMNME 134
+W MI GY ++ + +F EM +R++ H P + +LKAC
Sbjct: 385 GLATWNAMISGYAHAGHGRDALLVFREMRRRRRRHEDQHQPDEFTFASLLKACGGLGAPR 444
Query: 135 LGKQVHGLLFKLG--SSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192
G QVH + G ++ N L G+L++ Y K L A VF +L+R N + WT +V
Sbjct: 445 EGAQVHAAMAASGFSTASNAILAGALVDMYVKCGRLPVAMQVFERLERKNAIQWTTVVVG 504
Query: 193 NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDD---GNCGRQMHANIVKIG 249
+ +EG + F+ R + +++ SS++ GV D GRQ+H VK
Sbjct: 505 HAQEGQVMEALELFRRFWRSGARADAHVLSSIV----GVLADFALVEQGRQVHCYGVKSP 560
Query: 250 LESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFL 309
+D +VDMY KC L +AER+F I +N+ SW M+ G ++GL EA
Sbjct: 561 AGTDVSAGNSIVDMYLKCGLPDEAERMFREI-PARNVVSWTTMINGLGKHGLGREAVAMF 619
Query: 310 YLMKASGIQIQESLINDLRIACS 332
M+A G++ E L ACS
Sbjct: 620 EEMRAGGVEPDEVTYLALLSACS 642
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 87/183 (47%), Gaps = 2/183 (1%)
Query: 119 IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL 178
+I +L+A ++ G Q+HG L KLG + L +LI+ Y K L+ A VF +
Sbjct: 219 MIADLLRASAKGSSLRGGVQLHGALTKLGFGSDTMLGNNLIDMYAKCGELDMAGEVFGGM 278
Query: 179 KRHNTVVWTAKIVNNCREGHFHQVFNDFKEM-GRERIKKNSYTFSSVLKACGGVDDDGNC 237
+ N V WTA +V + G EM N YT S+ LKAC V +D
Sbjct: 279 RDRNVVSWTALMVGFLQHGDATGCLRLLGEMRAASEAAPNEYTLSASLKACC-VTEDMGA 337
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYI 297
G +H V+ G E V LV +Y K + DA RVF+ + +A+WNAM+ GY
Sbjct: 338 GVGIHGLCVRTGYEEHYVVASSLVLLYSKGGRIGDARRVFDCAGLGRGLATWNAMISGYA 397
Query: 298 RNG 300
G
Sbjct: 398 HAG 400
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 108/251 (43%), Gaps = 13/251 (5%)
Query: 47 LFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK- 105
+ L+ M+V CG+L A Q+F+ + ++ W ++VG+ E + LF +
Sbjct: 465 ILAGALVDMYVKCGRLPVAMQVFERLERKNAIQWTTVVVGHAQEGQVMEALELFRRFWRS 524
Query: 106 --RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYG 163
R H+L IV VL +E G+QVH K + ++S S+++ Y
Sbjct: 525 GARADAHVLSS-----IVGVLADFAL---VEQGRQVHCYGVKSPAGTDVSAGNSIVDMYL 576
Query: 164 KFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSS 223
K ++A+ +F ++ N V WT I + G + F+EM ++ + T+ +
Sbjct: 577 KCGLPDEAERMFREIPARNVVSWTTMINGLGKHGLGREAVAMFEEMRAGGVEPDEVTYLA 636
Query: 224 VLKACGGVDDDGNCGRQMHA-NIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282
+L AC C R + E+ C +VD+ G+ LR+A + +
Sbjct: 637 LLSACSHAGLVDECRRYFSCIRRDRTVRPKAEHYAC-MVDLLGRAGELREARDLIRTMPM 695
Query: 283 KKNIASWNAML 293
+ + W +L
Sbjct: 696 EPTVGVWQTLL 706
>gi|125524838|gb|EAY72952.1| hypothetical protein OsI_00823 [Oryza sativa Indica Group]
Length = 658
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 91/287 (31%), Positives = 141/287 (49%), Gaps = 20/287 (6%)
Query: 51 RLLLMHVSCGQLDTARQLFDEMP-LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+L+LM+V CG L+ AR++FDEMP + D W ++ GY ++Q+ + LF +M
Sbjct: 134 KLVLMYVKCGDLENARKVFDEMPQVSDVRVWTSLMSGYAKAGEFQDGVLLFRQM------ 187
Query: 110 HMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
H V P A I CVLK ++ G+ VHG L KLG ++ +LI Y + +
Sbjct: 188 HCSGVRPDAHAISCVLKCIAGLGSIADGEVVHGYLEKLGLGVQCAVGNALIALYSRCGHV 247
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFH-QVFNDFKEMGRERIKKNSYTFSSVLKA 227
+ + VF + + + W + +++ C +H + F +M E ++ N T VL A
Sbjct: 248 DGSLQVFDGMPHRDVISWNS-VISGCFSNGWHGKSIELFAKMWSEGLEINPVTMLGVLPA 306
Query: 228 CGGVDDDGNCGRQMHANIVKIGL----ES-----DEYVQCGLVDMYGKCRLLRDAERVFE 278
C + + GR +H VK GL ES DE + LV MY KC L A +VF+
Sbjct: 307 CAELGYN-LVGRVLHGYSVKTGLLWEFESLENGIDENLGSKLVFMYVKCGELGYARKVFD 365
Query: 279 LIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLIN 325
+ K N+ +WN M+ GY + G + E+ M GI E I+
Sbjct: 366 AMSSKSNLHAWNLMMGGYAKLGKFQESLLLFEKMHDCGITPDEHTIS 412
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 83/281 (29%), Positives = 134/281 (47%), Gaps = 26/281 (9%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLR-DFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
++L+ M+V CG+L AR++FD M + + ++W +M+ GY + +QE + LF +M
Sbjct: 345 SKLVFMYVKCGELGYARKVFDAMSSKSNLHAWNLMMGGYAKLGKFQESLLLFEKM----- 399
Query: 109 GHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
H + P I C+LK + G VHG L K G ++ +LI+FY K
Sbjct: 400 -HDCGITPDEHTISCLLKCITGLSGVMDGLVVHGYLVKYGFGAQCAVCNALISFYAKSNR 458
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
+EDA VF ++ + + + W + I G + + F M E + +S T SV+ A
Sbjct: 459 IEDALMVFDEMPQRDIISWNSIIGGCASNGLYDKAVELFVRMWLEGQELDSTTLLSVMPA 518
Query: 228 C--------GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFEL 279
C GGV +H V+ GL S+ + L+DMY C R ++F
Sbjct: 519 CVQSHYSFIGGV---------VHGYSVRTGLISETSLGNALLDMYSNCSDWRSTNKIFRN 569
Query: 280 IVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQ 320
+ ++KN+ SW AM+ Y R G + + M G +IQ
Sbjct: 570 M-EQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGLEGWKIQ 609
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 86/339 (25%), Positives = 150/339 (44%), Gaps = 20/339 (5%)
Query: 5 CLPITTDMY--TCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQL 62
C + D + +C++K C S E+++ +++ + N L+ ++ CG +
Sbjct: 189 CSGVRPDAHAISCVLK-CIAGLGSIADGEVVHGYLEKLGLGVQCAVGNALIALYSRCGHV 247
Query: 63 DTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVC 122
D + Q+FD MP RD SW +I G + + I LFA+M L + P ++
Sbjct: 248 DGSLQVFDGMPHRDVISWNSVISGCFSNGWHGKSIELFAKMWSEG----LEINPV-TMLG 302
Query: 123 VLKACVCTMNMELGKQVHGLLFKLG---------SSRNISLTGSLINFYGKFRCLEDADF 173
VL AC +G+ +HG K G + + +L L+ Y K L A
Sbjct: 303 VLPACAELGYNLVGRVLHGYSVKTGLLWEFESLENGIDENLGSKLVFMYVKCGELGYARK 362
Query: 174 VFSQL-KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVD 232
VF + + N W + + G F + F++M I + +T S +LK G+
Sbjct: 363 VFDAMSSKSNLHAWNLMMGGYAKLGKFQESLLLFEKMHDCGITPDEHTISCLLKCITGLS 422
Query: 233 DDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAM 292
+ G +H +VK G + V L+ Y K + DA VF+ + +++I SWN++
Sbjct: 423 GVMD-GLVVHGYLVKYGFGAQCAVCNALISFYAKSNRIEDALMVFDEM-PQRDIISWNSI 480
Query: 293 LVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
+ G NGLY +A + M G ++ + + + AC
Sbjct: 481 IGGCASNGLYDKAVELFVRMWLEGQELDSTTLLSVMPAC 519
>gi|225433177|ref|XP_002281549.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15130 [Vitis vinifera]
gi|296083673|emb|CBI23662.3| unnamed protein product [Vitis vinifera]
Length = 685
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 90/290 (31%), Positives = 145/290 (50%), Gaps = 19/290 (6%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N + M+ CG++ A Q+F++MP R+ SW MI G+ + ++ + LF M + +
Sbjct: 144 NATIDMYSKCGRIGMAEQVFNKMPFRNLVSWNAMIAGHTHEGNGRKSLVLFQRMQGQGE- 202
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLG---SSRNISLTGSLINFYGKFR 166
V + LKAC + G Q+H L G S RNI + ++++ Y K
Sbjct: 203 ----VPDEFTFTSTLKACGALGAIRGGTQIHASLITRGFPISIRNI-IASAIVDLYAKCG 257
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
L +A VF ++++ N + W+A I +EG+ + + F+++ RE + S VL
Sbjct: 258 YLFEAQKVFDRIEQKNLISWSALIQGFAQEGNLLEAMDLFRQL-RESV---SNVDGFVLS 313
Query: 227 ACGGVDDD---GNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVF-ELIVD 282
GV D G+QMH I+K+ D V ++DMY KC L +AER+F E+ V
Sbjct: 314 IMMGVFADLALVEQGKQMHCYILKVPSGLDISVANSIIDMYLKCGLTEEAERLFSEMQV- 372
Query: 283 KKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+N+ SW M+ GY ++GL +A M+ GI++ E L ACS
Sbjct: 373 -RNVVSWTVMITGYGKHGLGEKAIHLFNRMQLDGIELDEVAYLALLSACS 421
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 78/272 (28%), Positives = 136/272 (50%), Gaps = 9/272 (3%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L+ N L+ M+ C ++D A +FD M R+ SW ++ GY+ + + + L EM
Sbjct: 39 LIMNNDLIDMYGKCSRVDLACSVFDRMLERNVVSWTALMCGYLQEGNAKGSLALLCEM-- 96
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
G+ + + LKAC +E G Q+HG+ K G + + I+ Y K
Sbjct: 97 ---GYSGVKPNEFTFSTSLKACGALGVVENGMQIHGMCVKSGFEWVSVVGNATIDMYSKC 153
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
+ A+ VF+++ N V W A I + EG+ + F+ M + + +TF+S L
Sbjct: 154 GRIGMAEQVFNKMPFRNLVSWNAMIAGHTHEGNGRKSLVLFQRMQGQGEVPDEFTFTSTL 213
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESD--EYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
KACG + G Q+HA+++ G + +VD+Y KC L +A++VF+ I ++
Sbjct: 214 KACGALGAI-RGGTQIHASLITRGFPISIRNIIASAIVDLYAKCGYLFEAQKVFDRI-EQ 271
Query: 284 KNIASWNAMLVGYIRNGLYVEATKFLYLMKAS 315
KN+ SW+A++ G+ + G +EA ++ S
Sbjct: 272 KNLISWSALIQGFAQEGNLLEAMDLFRQLRES 303
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 100/214 (46%), Gaps = 2/214 (0%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
+L+ C + G QVH +G ++ + LI+ YGK ++ A VF ++ N
Sbjct: 10 LLRNCSKNGLFDQGLQVHAAAVNMGFGFDLIMNNDLIDMYGKCSRVDLACSVFDRMLERN 69
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
V WTA + +EG+ EMG +K N +TFS+ LKACG + N G Q+H
Sbjct: 70 VVSWTALMCGYLQEGNAKGSLALLCEMGYSGVKPNEFTFSTSLKACGALGVVEN-GMQIH 128
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
VK G E V +DMY KC + AE+VF + +N+ SWNAM+ G+ G
Sbjct: 129 GMCVKSGFEWVSVVGNATIDMYSKCGRIGMAEQVFNKM-PFRNLVSWNAMIAGHTHEGNG 187
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
++ M+ G E AC ++ A
Sbjct: 188 RKSLVLFQRMQGQGEVPDEFTFTSTLKACGALGA 221
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 118/248 (47%), Gaps = 23/248 (9%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
++ CG L A+++FD + ++ SW+ +I G+ + E + LF ++ R+ +
Sbjct: 252 LYAKCGYLFEAQKVFDRIEQKNLISWSALIQGFAQEGNLLEAMDLFRQL--RESVSNVDG 309
Query: 115 FPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFV 174
F I++ V +E GKQ+H + K+ S +IS+ S+I+ Y K E+A+ +
Sbjct: 310 FVLSIMMGVFADLAL---VEQGKQMHCYILKVPSGLDISVANSIIDMYLKCGLTEEAERL 366
Query: 175 FSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--GGVD 232
FS+++ N V WT I + G + + F M + I+ + + ++L AC G+
Sbjct: 367 FSEMQVRNVVSWTVMITGYGKHGLGEKAIHLFNRMQLDGIELDEVAYLALLSACSHSGLI 426
Query: 233 DDGN------C-GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
+ C QM NI E+ C +VD+ G+ L++A+ + E + K N
Sbjct: 427 RESQEYFSRLCNNHQMKPNI--------EHYAC-MVDILGRAGQLKEAKNLIENMKLKPN 477
Query: 286 IASWNAML 293
W +L
Sbjct: 478 EGIWQTLL 485
>gi|449488546|ref|XP_004158080.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21300-like [Cucumis sativus]
Length = 762
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/264 (29%), Positives = 130/264 (49%), Gaps = 7/264 (2%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+V G L A+ LF + L ++W MI G+ + + + + +M+
Sbjct: 1 MYVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYT 60
Query: 115 FPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFV 174
FP V+KAC ++++GK VH + +G ++ + SLI Y + L DA ++
Sbjct: 61 FPY-----VVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYL 115
Query: 175 FSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDD 234
F + + ++V+W + + G F EM IK NS TF+ VL C +
Sbjct: 116 FDNIPQKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCAS-EAM 174
Query: 235 GNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLV 294
+ G Q+H V GLE D V L+ MY KC+ L+ A ++F+ + + ++ SWN ++
Sbjct: 175 LDLGTQLHGIAVGCGLELDSPVANTLLAMYSKCQCLQAARKLFDTL-PQSDLVSWNGIIS 233
Query: 295 GYIRNGLYVEATKFLYLMKASGIQ 318
GY++NGL EA M ++GI+
Sbjct: 234 GYVQNGLMGEAEHLFRGMISAGIK 257
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 89/288 (30%), Positives = 134/288 (46%), Gaps = 9/288 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N LL M+ C L AR+LFD +P D SW +I GYV E LF M+
Sbjct: 198 NTLLAMYSKCQCLQAARKLFDTLPQSDLVSWNGIISGYVQNGLMGEAEHLFRGMISAG-- 255
Query: 110 HMLLVFPAWIIVCVLKACVCTM-NMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+ P I CV + +++ K++HG + + ++ L +LI+ Y K R +
Sbjct: 256 ----IKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSALIDIYFKCRDV 311
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
E A Q +TVV T I G + F+ + +ER+K S TFSS+ A
Sbjct: 312 EMAQKNLCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPAF 371
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
G+ N G+++H +I+K L+ +V ++DMY KC L A RVF I +K I
Sbjct: 372 AGLAAL-NLGKELHGSIIKTKLDEKCHVGSAILDMYAKCGRLDLACRVFNRITEKDAIC- 429
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
WN+M+ +NG EA M G + I+ AC+++ A
Sbjct: 430 WNSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSACANLPA 477
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 80/306 (26%), Positives = 141/306 (46%), Gaps = 22/306 (7%)
Query: 8 ITTDMYT--CLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTA 65
++ D YT ++K C K S ++++ + +K + + L+ ++ G L A
Sbjct: 54 VSPDKYTFPYVVKACCGLK-SVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDA 112
Query: 66 RQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLK 125
+ LFD +P +D W VM+ GYV D I +F EM + + F CVL
Sbjct: 113 QYLFDNIPQKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTF-----ACVLS 167
Query: 126 ACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVV 185
C ++LG Q+HG+ G + + +L+ Y K +CL+ A +F L + + V
Sbjct: 168 VCASEAMLDLGTQLHGIAVGCGLELDSPVANTLLAMYSKCQCLQAARKLFDTLPQSDLVS 227
Query: 186 WTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANI 245
W I + G + + F+ M IK +S TF+S L + +C +++H I
Sbjct: 228 WNGIISGYVQNGLMGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHC-KEIHGYI 286
Query: 246 VKIGLESDEYVQCGLVDMYGKCRLLRDAER------VFELIVDKKNIASWNAMLVGYIRN 299
++ + D +++ L+D+Y KCR + A++ F+ +V M+ GY+ N
Sbjct: 287 IRHAVVLDVFLKSALIDIYFKCRDVEMAQKNLCQSSSFDTVV-------CTTMISGYVLN 339
Query: 300 GLYVEA 305
G EA
Sbjct: 340 GKNKEA 345
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/241 (27%), Positives = 114/241 (47%), Gaps = 15/241 (6%)
Query: 82 VMIVGYVDVADYQECITLF----AEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGK 137
MI GYV +E + F E MK +FPA+ + L LGK
Sbjct: 331 TMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALN---------LGK 381
Query: 138 QVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREG 197
++HG + K + ++++ Y K L+ A VF+++ + + W + I + + G
Sbjct: 382 ELHGSIIKTKLDEKCHVGSAILDMYAKCGRLDLACRVFNRITEKDAICWNSMITSCSQNG 441
Query: 198 HFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQ 257
+ N F++MG E + + + S L AC + + G+++H ++K L SD Y +
Sbjct: 442 RPGEAINLFRQMGMEGTRYDCVSISGALSACANLPAL-HYGKEIHGLMIKGPLRSDLYAE 500
Query: 258 CGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGI 317
L+DMY KC L + RVF+ + +KN SWN+++ Y +G E + M +GI
Sbjct: 501 SSLIDMYAKCGNLNFSRRVFDRM-QEKNEVSWNSIISAYGNHGDLKECLALFHEMLRNGI 559
Query: 318 Q 318
Q
Sbjct: 560 Q 560
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 63/243 (25%), Positives = 101/243 (41%), Gaps = 7/243 (2%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
+L M+ CG+LD A ++F+ + +D W MI E I LF R+ G
Sbjct: 402 ILDMYAKCGRLDLACRVFNRITEKDAICWNSMITSCSQNGRPGEAINLF-----RQMGME 456
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+ I L AC + GK++HGL+ K ++ SLI+ Y K L +
Sbjct: 457 GTRYDCVSISGALSACANLPALHYGKEIHGLMIKGPLRSDLYAESSLIDMYAKCGNLNFS 516
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
VF +++ N V W + I G + F EM R I+ + TF ++ ACG
Sbjct: 517 RRVFDRMQEKNEVSWNSIISAYGNHGDLKECLALFHEMLRNGIQPDHVTFLGIISACGHA 576
Query: 232 DDDGNCGRQMHANIVKIGLESD-EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWN 290
R H + G+ + E+ C + DM+G+ L +A + + W
Sbjct: 577 GQVDEGIRYYHLMTEEYGIPARMEHYAC-VADMFGRAGRLHEAFETINSMPFPPDAGVWG 635
Query: 291 AML 293
+L
Sbjct: 636 TLL 638
>gi|357504267|ref|XP_003622422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355497437|gb|AES78640.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 952
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/282 (28%), Positives = 138/282 (48%), Gaps = 13/282 (4%)
Query: 56 HVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVF 115
+ C + A+ +FD MP RD +W + YV+ Q+ + +F EM+ + V
Sbjct: 186 YAKCLCVREAQTVFDLMPHRDVVTWNSLSSCYVNCGFPQKGLNVFREMV------LDGVK 239
Query: 116 PAWIIV-CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFV 174
P + V C+L AC +++ GK +HG K G N+ ++ +L+N Y C+ +A V
Sbjct: 240 PDPVTVSCILSACSDLQDLKSGKAIHGFALKHGMVENVFVSNALVNLYESCLCVREAQAV 299
Query: 175 FSQLKRHNTVVWT--AKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVD 232
F + N + W A NC G + N F+EMG +K + SS+L AC +
Sbjct: 300 FDLMPHRNVITWNSLASCYVNC--GFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQLK 357
Query: 233 DDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAM 292
D + G+ +H VK G+ D +V LV++Y C +R+A+ VF+L+ +N+ +WN++
Sbjct: 358 DLKS-GKTIHGFAVKHGMVEDVFVCTALVNLYANCLCVREAQTVFDLM-PHRNVVTWNSL 415
Query: 293 LVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
Y+ G + M +G++ + + ACS +
Sbjct: 416 SSCYVNCGFPQKGLNVFREMVLNGVKPDLVTMLSILHACSDL 457
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 70/286 (24%), Positives = 142/286 (49%), Gaps = 9/286 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEM-MKRKK 108
N + + C ++ AR++FD++ RD +W + YV+ Q+ + +F +M + + K
Sbjct: 79 NAFIHAYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKMGLNKVK 138
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+ L V +L C +++ GK++HG + + G ++ ++ + +NFY K C+
Sbjct: 139 ANPLTV------SSILPGCSDLQDLKSGKEIHGFVVRHGMVEDVFVSSAFVNFYAKCLCV 192
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+A VF + + V W + G + N F+EM + +K + T S +L AC
Sbjct: 193 REAQTVFDLMPHRDVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSAC 252
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
+ D + G+ +H +K G+ + +V LV++Y C +R+A+ VF+L+ +N+ +
Sbjct: 253 SDLQDLKS-GKAIHGFALKHGMVENVFVSNALVNLYESCLCVREAQAVFDLM-PHRNVIT 310
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
WN++ Y+ G + M +G++ ++ + ACS +
Sbjct: 311 WNSLASCYVNCGFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQL 356
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 81/315 (25%), Positives = 144/315 (45%), Gaps = 11/315 (3%)
Query: 7 PITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTAR 66
P+T +C++ C+ +D + K ++ + N L+ ++ SC + A+
Sbjct: 242 PVTV---SCILSACSDLQDLKSGKAIHGFALKHGMVE-NVFVSNALVNLYESCLCVREAQ 297
Query: 67 QLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKA 126
+FD MP R+ +W + YV+ Q+ + +F EM G + + +L A
Sbjct: 298 AVFDLMPHRNVITWNSLASCYVNCGFPQKGLNVFREM-----GLNGVKPDPMAMSSILPA 352
Query: 127 CVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVW 186
C +++ GK +HG K G ++ + +L+N Y C+ +A VF + N V W
Sbjct: 353 CSQLKDLKSGKTIHGFAVKHGMVEDVFVCTALVNLYANCLCVREAQTVFDLMPHRNVVTW 412
Query: 187 TAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIV 246
+ G + N F+EM +K + T S+L AC + D + G+ +H V
Sbjct: 413 NSLSSCYVNCGFPQKGLNVFREMVLNGVKPDLVTMLSILHACSDLQDLKS-GKVIHGFAV 471
Query: 247 KIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEAT 306
+ G+ D +V L+ +Y KC +R+A+ VF+LI + +ASWN +L Y N Y +
Sbjct: 472 RHGMVEDVFVCNALLSLYAKCVCVREAQVVFDLI-PHREVASWNGILTAYFTNKEYEKGL 530
Query: 307 KFLYLMKASGIQIQE 321
M ++ E
Sbjct: 531 YMFSQMNRDEVKADE 545
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 107/216 (49%), Gaps = 2/216 (0%)
Query: 119 IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL 178
+ + V KAC + + KQ H + G ++S+ + I+ YGK +C+E A VF L
Sbjct: 42 VFMAVAKACAASRDALKVKQFHDDATRCGVMSDVSIGNAFIHAYGKCKCVEGARRVFDDL 101
Query: 179 KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCG 238
+ V W + G Q N F++MG ++K N T SS+L C + D + G
Sbjct: 102 VARDVVTWNSLSACYVNCGFPQQGLNVFRKMGLNKVKANPLTVSSILPGCSDLQDLKS-G 160
Query: 239 RQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIR 298
+++H +V+ G+ D +V V+ Y KC +R+A+ VF+L+ +++ +WN++ Y+
Sbjct: 161 KEIHGFVVRHGMVEDVFVSSAFVNFYAKCLCVREAQTVFDLM-PHRDVVTWNSLSSCYVN 219
Query: 299 NGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
G + M G++ ++ + ACS +
Sbjct: 220 CGFPQKGLNVFREMVLDGVKPDPVTVSCILSACSDL 255
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/315 (21%), Positives = 130/315 (41%), Gaps = 40/315 (12%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ ++ +C + A+ +FD MP R+ +W + YV+ Q+ + +F EM+
Sbjct: 384 LVNLYANCLCVREAQTVFDLMPHRNVVTWNSLSSCYVNCGFPQKGLNVFREMVLNGVKPD 443
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
L+ ++ +L AC +++ GK +HG + G ++ + +L++ Y K C+ +A
Sbjct: 444 LVT-----MLSILHACSDLQDLKSGKVIHGFAVRHGMVEDVFVCNALLSLYAKCVCVREA 498
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--- 228
VF + W + + + F +M R+ +K + T+S V+ C
Sbjct: 499 QVVFDLIPHREVASWNGILTAYFTNKEYEKGLYMFSQMNRDEVKADEITWSVVIGGCVKN 558
Query: 229 ----------------GGVDDD------------GNC---GRQMHANIVKIGLESDEYVQ 257
G D+ C G+++H + + + D
Sbjct: 559 SRIEEAMEIFRKMQTMGFKPDETTIYSILRACSLSECLRMGKEIHCYVFRHWKDWDLART 618
Query: 258 CGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGI 317
LVDMY KC L + VF+++ K++ SWN M+ +G EA M S +
Sbjct: 619 NALVDMYAKCGGLSLSRNVFDMM-PIKDVFSWNTMIFANGMHGNGKEALSLFEKMLLSMV 677
Query: 318 QIQESLINDLRIACS 332
+ + + ACS
Sbjct: 678 KPDSATFTCVLSACS 692
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 75/328 (22%), Positives = 138/328 (42%), Gaps = 43/328 (13%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK---- 105
N LL ++ C + A+ +FD +P R+ SW ++ Y +Y++ + +F++M +
Sbjct: 483 NALLSLYAKCVCVREAQVVFDLIPHREVASWNGILTAYFTNKEYEKGLYMFSQMNRDEVK 542
Query: 106 --------------------------RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQV 139
RK M I +L+AC + + +GK++
Sbjct: 543 ADEITWSVVIGGCVKNSRIEEAMEIFRKMQTMGFKPDETTIYSILRACSLSECLRMGKEI 602
Query: 140 HGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHF 199
H +F+ +++ T +L++ Y K L + VF + + W I N G+
Sbjct: 603 HCYVFRHWKDWDLARTNALVDMYAKCGGLSLSRNVFDMMPIKDVFSWNTMIFANGMHGNG 662
Query: 200 HQVFNDFKEMGRERIKKNSYTFSSVLKACGG---VDDDGNCGRQMHANIVKIGL--ESDE 254
+ + F++M +K +S TF+ VL AC V++ G Q+ ++ + L E
Sbjct: 663 KEALSLFEKMLLSMVKPDSATFTCVLSACSHSMLVEE----GVQIFNSMSRDHLVEPEAE 718
Query: 255 YVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG---YIRNGLYVEATKFLYL 311
+ C +VD+Y + L +A + + + +W A L G Y L + K L+
Sbjct: 719 HYTC-VVDIYSRAGCLEEAYGFIQRMPMEPTAIAWKAFLAGCRVYKNVELAKISAKKLFE 777
Query: 312 MKASGIQIQESLINDLRIACSSISASKI 339
+ +G +L N L A ASKI
Sbjct: 778 IDPNGSANYVTLFNILVTAKLWSEASKI 805
>gi|124360536|gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 1083
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/296 (27%), Positives = 149/296 (50%), Gaps = 8/296 (2%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
++ +L+ ++V+ G + +R FD + ++ SW +I YV Y E + ++
Sbjct: 54 IVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRFGKYHEAMNCVNQLFS 113
Query: 106 R-KKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
GH+ F + +LKACV ++ GK+VH +FK+G ++ + SL++ Y +
Sbjct: 114 MCGGGHLRPDF--YTFPPILKACVSLVD---GKKVHCCVFKMGFEDDVFVAASLVHLYSR 168
Query: 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
+ L+ A VF + + W A I C+ G+ M E +K ++ T +S+
Sbjct: 169 YGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASI 228
Query: 225 LKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
L C DD N G +H +++K GL+SD +V L++MY K L+DA+ VF+ + + +
Sbjct: 229 LPVCAQSDDVIN-GVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQM-EVR 286
Query: 285 NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKIN 340
++ SWN+++ Y +N A +F M+ GI+ + L S +S +I+
Sbjct: 287 DLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRIS 342
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 103/206 (50%), Gaps = 9/206 (4%)
Query: 131 MNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKI 190
+N+ K++H LL G S+NI L+ LIN Y + + F + + N W + I
Sbjct: 33 VNVNATKKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSII 92
Query: 191 VNNCREGHFHQVFNDFKEM----GRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIV 246
R G +H+ N ++ G ++ + YTF +LKAC + D G+++H +
Sbjct: 93 SAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLVD----GKKVHCCVF 148
Query: 247 KIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEAT 306
K+G E D +V LV +Y + +L A +VF + + K++ SWNAM+ G+ +NG A
Sbjct: 149 KMGFEDDVFVAASLVHLYSRYGVLDVAHKVF-VDMPVKDVGSWNAMISGFCQNGNAAGAL 207
Query: 307 KFLYLMKASGIQIQESLINDLRIACS 332
L MK G+++ + + C+
Sbjct: 208 GVLNRMKGEGVKMDTITVASILPVCA 233
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 120/262 (45%), Gaps = 6/262 (2%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ ++ G LD A ++F +MP++D SW MI G+ + + + + R KG
Sbjct: 162 LVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGV----LNRMKGEG 217
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+ + + +L C + ++ G +H + K G ++ ++ +LIN Y KF L+DA
Sbjct: 218 VKM-DTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDA 276
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
VF Q++ + V W + I + FK M I+ + T S+ +
Sbjct: 277 QMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQL 336
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
D + I + L+ D + LV+MY K + A VF+ + +K+ SWN
Sbjct: 337 SDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQL-PRKDTISWNT 395
Query: 292 MLVGYIRNGLYVEATKFLYLMK 313
++ GY +NGL EA +M+
Sbjct: 396 LVTGYTQNGLASEAIDAYNMME 417
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 75/297 (25%), Positives = 133/297 (44%), Gaps = 24/297 (8%)
Query: 8 ITTDMYTCLIKECTFQK--DSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTA 65
I D+ T + F + D + +L + +R + ++ N L+ M+ G ++ A
Sbjct: 319 IRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCA 378
Query: 66 RQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK-----RKKGHMLLVFPAWII 120
+FD++P +D SW ++ GY E I + M + +G + + PA+
Sbjct: 379 HTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSH 438
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
V L+ G ++H L K ++ + LI+ YGK LEDA +F ++ R
Sbjct: 439 VGALQQ---------GMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPR 489
Query: 181 HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC---GGVDDDGNC 237
+V W A I + G + FK+M ER+K + TF S+L AC G VD+ C
Sbjct: 490 DTSVPWNAIIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKC 549
Query: 238 GRQMHANIVKIGLESD-EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
M + G++ ++ C +VD+ G+ L A + + + + + W A+L
Sbjct: 550 FDIMQK---EYGIKPSLKHYGC-MVDLLGRAGYLEKAYELVRNMPIQPDASIWGALL 602
>gi|225428104|ref|XP_002278241.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35130,
chloroplastic [Vitis vinifera]
gi|297744563|emb|CBI37825.3| unnamed protein product [Vitis vinifera]
Length = 802
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/268 (31%), Positives = 132/268 (49%), Gaps = 7/268 (2%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
L R L +V G + A LF+ M D W VMI G+VD + + + + M
Sbjct: 63 LTRALSSYVERGYMKNALDLFENMRQCDTFIWNVMIRGFVDNGLFWDAVDFYHRMEFGGV 122
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+P V+KAC ++ G++VHG + K G +I + SLI Y K C+
Sbjct: 123 RGDNFTYP-----FVIKACGGLYDLAEGERVHGKVIKSGLDLDIYIGNSLIIMYAKIGCI 177
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
E A+ VF ++ + V W + I G + + F+EM IK + ++ +L AC
Sbjct: 178 ESAEMVFREMPVRDLVSWNSMISGYVSVGDGWRSLSCFREMQASGIKLDRFSVIGILGAC 237
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
++ G+++H +++ LE D VQ LVDMY KC + AER+F+ I D K+I +
Sbjct: 238 -SLEGFLRNGKEIHCQMMRSRLELDVMVQTSLVDMYAKCGRMDYAERLFDQITD-KSIVA 295
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASG 316
WNAM+ GY N E+ ++ M+ G
Sbjct: 296 WNAMIGGYSLNAQSFESFAYVRKMQEGG 323
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 78/295 (26%), Positives = 144/295 (48%), Gaps = 8/295 (2%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R ++ ++ L+ M+ CG++D A +LFD++ + +W MI GY A E
Sbjct: 255 RSRLELDVMVQTSLVDMYAKCGRMDYAERLFDQITDKSIVAWNAMIGGYSLNAQSFESFA 314
Query: 99 LFAEMMKRKKGHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGS 157
+M + K H P WI ++ +L C + LGK VHG + G ++ L +
Sbjct: 315 YVRKMQEGGKLH-----PDWITMINLLPPCAQLEAILLGKSVHGFAIRNGFLPHLVLETA 369
Query: 158 LINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKN 217
L++ YG+ L+ A+ +F Q+ N + W A I + + G + F+++ + +K +
Sbjct: 370 LVDMYGECGKLKPAECLFGQMNERNLISWNAMIASYTKNGENRKAMTLFQDLCNKTLKPD 429
Query: 218 SYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVF 277
+ T +S+L A + Q+H + K+ L+S+ +V +V MYGKC L A +F
Sbjct: 430 ATTIASILPAYAELASLREA-EQIHGYVTKLKLDSNTFVSNSIVFMYGKCGNLLRAREIF 488
Query: 278 ELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+ + K++ SWN +++ Y +G + + M+ G + S L ++CS
Sbjct: 489 DRMT-FKDVISWNTVIMAYAIHGFGRISIELFSEMREKGFEPNGSTFVSLLLSCS 542
>gi|302763819|ref|XP_002965331.1| hypothetical protein SELMODRAFT_82859 [Selaginella moellendorffii]
gi|300167564|gb|EFJ34169.1| hypothetical protein SELMODRAFT_82859 [Selaginella moellendorffii]
Length = 806
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 149/310 (48%), Gaps = 8/310 (2%)
Query: 28 GAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGY 87
G ++ + I+ ++ +L LN L+ M+V CG+LD A ++F +MP R+ SW MI
Sbjct: 267 GGIQIHDKIQSEIH-GTRVLVLNALISMYVRCGKLDEALRVFADMPHRNVVSWTSMIAAV 325
Query: 88 VDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLG 147
Y + LF M+ + + +V + ++ G+++H + G
Sbjct: 326 AQTGHYSFSVKLFDGMIAEGINPNEKTYAS--VVSAIAHLGRDAILDRGRKIHSQITASG 383
Query: 148 SSRNISLTGSLINFYGKFRCLEDADFVF-SQLKRHNTVV-WTAKIVNNCREGHFHQVFND 205
+ + SLIN Y + L +A VF S L+ TVV +T I GH Q
Sbjct: 384 IDADPIVQNSLINMYARSGLLAEAREVFDSILENSKTVVSFTTMISAYAHNGHPRQALEI 443
Query: 206 FKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLE-SDEYVQCGLVDMY 264
F+EM + N TF++VL AC + D + G +H +++ GL+ SD + LVDMY
Sbjct: 444 FREMTARGVAPNEITFATVLAACVAIGDLAS-GAWIHERMIESGLDSSDPFAYNSLVDMY 502
Query: 265 GKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLI 324
KC L A RVFE + K++ +W ++ +++G A M SGI + +
Sbjct: 503 AKCGDLGFAARVFE-TMKTKDLVAWTTIIAANVQSGNNRAALDLYDRMLQSGIHPDIATL 561
Query: 325 NDLRIACSSI 334
+ L +AC+++
Sbjct: 562 STLLVACANL 571
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/246 (21%), Positives = 108/246 (43%), Gaps = 9/246 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ CG L A ++F+ M +D +W +I V + + + L+ M++
Sbjct: 496 NSLVDMYAKCGDLGFAARVFETMKTKDLVAWTTIIAANVQSGNNRAALDLYDRMLQSG-- 553
Query: 110 HMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+ P + +L AC ++ +G+++H + ++ +L Y K L
Sbjct: 554 ----IHPDIATLSTLLVACANLGDLAMGEKIHRQALRSKLEQDAHFQNALAAMYAKCGSL 609
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
E A ++ + + + WT+ + + ++G + EM E ++ N TF VL +C
Sbjct: 610 EKATRLYRRCRGSDVATWTSMLAAHSQQGLASVALELYAEMESEGVRPNEVTFIPVLISC 669
Query: 229 GGVDDDGNCGRQMHANIVKIGLE-SDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
H+ G + S E+ C +VD+ G+ LRDAE + + + +
Sbjct: 670 SQAGLVAEGREFFHSITSDYGSQPSAEHFGC-MVDVLGRAGKLRDAEELLDSMPFYPDEI 728
Query: 288 SWNAML 293
+W ++L
Sbjct: 729 AWQSLL 734
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 74/317 (23%), Positives = 125/317 (39%), Gaps = 25/317 (7%)
Query: 12 MYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDE 71
+Y L+++C Q+ + HI R + LL + M+ C DTA LFD
Sbjct: 52 LYANLLRQCGNQRALDHGRRVHAHIVSRRLARNALLG-ELVFQMYARCRCFDTAIALFDA 110
Query: 72 MPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTM 131
MP R W V++ ++ ++ + L+ M F W IV AC
Sbjct: 111 MPDRRPFCWNVLMKEFLAADRPRDTLELYRRMSVENTQPSACGF-MWAIV----ACGRIK 165
Query: 132 NMELGKQVHGLLFKLGSSRNI--SLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAK 189
++ G+ +H +++ + R I S+ +L+ Y + ++ A F + T W A
Sbjct: 166 DLAQGRSIH---YRVATGRGINSSIQSALVTMYAQCGRIDLAMAAFDDNRELGTAPWNAI 222
Query: 190 IVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC-----GGVDDDGNCGRQMHAN 244
+ GH + F +M + + S + A GG+ ++H
Sbjct: 223 MSALAGAGHHRRAIELFFQMEQHQCSDRSCAIALGACAAAGHLRGGIQIHDKIQSEIHGT 282
Query: 245 IVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVE 304
V V L+ MY +C L +A RVF + +N+ SW +M+ + G Y
Sbjct: 283 RV--------LVLNALISMYVRCGKLDEALRVFA-DMPHRNVVSWTSMIAAVAQTGHYSF 333
Query: 305 ATKFLYLMKASGIQIQE 321
+ K M A GI E
Sbjct: 334 SVKLFDGMIAEGINPNE 350
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/158 (19%), Positives = 62/158 (39%), Gaps = 6/158 (3%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R ++ F N L M+ CG L+ A +L+ D +W M+ + +
Sbjct: 586 RSKLEQDAHFQNALAAMYAKCGSLEKATRLYRRCRGSDVATWTSMLAAHSQQGLASVALE 645
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQ-VHGLLFKLGSSRNISLTGS 157
L+AEM + F +I C V G++ H + GS + G
Sbjct: 646 LYAEMESEGVRPNEVTFIPVLISCSQAGLVAE-----GREFFHSITSDYGSQPSAEHFGC 700
Query: 158 LINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCR 195
+++ G+ L DA+ + + + + ++++C+
Sbjct: 701 MVDVLGRAGKLRDAEELLDSMPFYPDEIAWQSLLSSCK 738
>gi|18409250|ref|NP_564961.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75168871|sp|Q9C507.1|PP111_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g69350, mitochondrial; Flags: Precursor
gi|12325094|gb|AAG52503.1|AC018364_21 hypothetical protein; 27026-24663 [Arabidopsis thaliana]
gi|12597785|gb|AAG60097.1|AC073178_8 PPR-repeat protein, putative [Arabidopsis thaliana]
gi|332196793|gb|AEE34914.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 787
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 89/303 (29%), Positives = 150/303 (49%), Gaps = 15/303 (4%)
Query: 37 RKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQEC 96
RK ++ TL N LL M+ CG L ++ ++F+++ ++ SW MI Y ++
Sbjct: 230 RKMFDLDETLC--NSLLTMYSKCGDLLSSERIFEKIAKKNAVSWTAMISSYNRGEFSEKA 287
Query: 97 ITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNI-SLT 155
+ F+EM+K L+ + VL +C + GK VHG + N SL+
Sbjct: 288 LRSFSEMIKSGIEPNLVT-----LYSVLSSCGLIGLIREGKSVHGFAVRRELDPNYESLS 342
Query: 156 GSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIK 215
+L+ Y + L D + V + N V W + I G Q F++M +RIK
Sbjct: 343 LALVELYAECGKLSDCETVLRVVSDRNIVAWNSLISLYAHRGMVIQALGLFRQMVTQRIK 402
Query: 216 KNSYTFSSVLKACGGVDDDG--NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDA 273
+++T +S + AC ++ G G+Q+H ++++ + SDE+VQ L+DMY K + A
Sbjct: 403 PDAFTLASSISAC---ENAGLVPLGKQIHGHVIRTDV-SDEFVQNSLIDMYSKSGSVDSA 458
Query: 274 ERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSS 333
VF I +++ +WN+ML G+ +NG VEA M S +++ E + ACSS
Sbjct: 459 STVFNQI-KHRSVVTWNSMLCGFSQNGNSVEAISLFDYMYHSYLEMNEVTFLAVIQACSS 517
Query: 334 ISA 336
I +
Sbjct: 518 IGS 520
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 77/289 (26%), Positives = 139/289 (48%), Gaps = 20/289 (6%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL M+ G L A ++FD MP+RD +W+ ++ ++ + + + +F M+
Sbjct: 142 LLCMYGQTGNLSDAEKVFDGMPVRDLVAWSTLVSSCLENGEVVKALRMFKCMVDDG---- 197
Query: 112 LLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
V P A ++ V++ C + + + VHG + + + +L SL+ Y K L
Sbjct: 198 --VEPDAVTMISVVEGCAELGCLRIARSVHGQITRKMFDLDETLCNSLLTMYSKCGDLLS 255
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG- 229
++ +F ++ + N V WTA I + R + F EM + I+ N T SVL +CG
Sbjct: 256 SERIFEKIAKKNAVSWTAMISSYNRGEFSEKALRSFSEMIKSGIEPNLVTLYSVLSSCGL 315
Query: 230 -GVDDDGNCGRQMHANIVKIGLESD-EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
G+ + G+ +H V+ L+ + E + LV++Y +C L D E V ++ D +NI
Sbjct: 316 IGLIRE---GKSVHGFAVRRELDPNYESLSLALVELYAECGKLSDCETVLRVVSD-RNIV 371
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+WN+++ Y G+ ++A M + + + D SSISA
Sbjct: 372 AWNSLISLYAHRGMVIQALGLFRQM------VTQRIKPDAFTLASSISA 414
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/281 (24%), Positives = 130/281 (46%), Gaps = 11/281 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ ++ CG+L + + R+ +W +I Y + + LF +M+ ++
Sbjct: 345 LVELYAECGKLSDCETVLRVVSDRNIVAWNSLISLYAHRGMVIQALGLFRQMVTQR---- 400
Query: 112 LLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
+ P A+ + + AC + LGKQ+HG + + S + SLI+ Y K ++
Sbjct: 401 --IKPDAFTLASSISACENAGLVPLGKQIHGHVIRTDVSDEF-VQNSLIDMYSKSGSVDS 457
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
A VF+Q+K + V W + + + G+ + + F M ++ N TF +V++AC
Sbjct: 458 ASTVFNQIKHRSVVTWNSMLCGFSQNGNSVEAISLFDYMYHSYLEMNEVTFLAVIQACSS 517
Query: 231 VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWN 290
+ G+ +H ++ GL+ D + L+DMY KC L AE VF + + ++ +
Sbjct: 518 IGSLEK-GKWVHHKLIISGLK-DLFTDTALIDMYAKCGDLNAAETVFRAMSSRSIVSW-S 574
Query: 291 AMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
+M+ Y +G A M SG + E + ++ AC
Sbjct: 575 SMINAYGMHGRIGSAISTFNQMVESGTKPNEVVFMNVLSAC 615
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 115/250 (46%), Gaps = 15/250 (6%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ G +D+A +F+++ R +W M+ G+ + E I+LF M
Sbjct: 443 NSLIDMYSKSGSVDSASTVFNQIKHRSVVTWNSMLCGFSQNGNSVEAISLFDYMY----- 497
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
H L + V++AC ++E GK VH L G +++ +LI+ Y K L
Sbjct: 498 HSYLEMNEVTFLAVIQACSSIGSLEKGKWVHHKLIISGL-KDLFTDTALIDMYAKCGDLN 556
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A+ VF + + V W++ I G + F +M K N F +VL ACG
Sbjct: 557 AAETVFRAMSSRSIVSWSSMINAYGMHGRIGSAISTFNQMVESGTKPNEVVFMNVLSACG 616
Query: 230 --GVDDDGNCGRQMHANIVK-IGLESD-EYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
G ++G + + N++K G+ + E+ C +D+ + L++A R + + +
Sbjct: 617 HSGSVEEG----KYYFNLMKSFGVSPNSEHFAC-FIDLLSRSGDLKEAYRTIKEMPFLAD 671
Query: 286 IASWNAMLVG 295
+ W +++ G
Sbjct: 672 ASVWGSLVNG 681
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 88/188 (46%), Gaps = 2/188 (1%)
Query: 132 NMELGKQVHGLLFKLGSSRNISLTGS-LINFYGKFRCLEDADFVFSQLKRHNTVVWTAKI 190
++ L Q+H L G R L + LI Y + + VF ++ ++ I
Sbjct: 13 SLRLVSQLHAHLLVTGRLRRDPLPVTKLIESYAFMGSPDSSRLVFEAFPYPDSFMYGVLI 72
Query: 191 VNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGL 250
N + + + E + + + F SVL+AC G + + G ++H I+K G+
Sbjct: 73 KCNVWCHLLDAAIDLYHRLVSETTQISKFVFPSVLRACAGSREHLSVGGKVHGRIIKGGV 132
Query: 251 ESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLY 310
+ D ++ L+ MYG+ L DAE+VF+ + +++ +W+ ++ + NG V+A +
Sbjct: 133 DDDAVIETSLLCMYGQTGNLSDAEKVFDGM-PVRDLVAWSTLVSSCLENGEVVKALRMFK 191
Query: 311 LMKASGIQ 318
M G++
Sbjct: 192 CMVDDGVE 199
>gi|125561353|gb|EAZ06801.1| hypothetical protein OsI_29045 [Oryza sativa Indica Group]
Length = 696
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/274 (29%), Positives = 124/274 (45%), Gaps = 12/274 (4%)
Query: 62 LDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIV 121
L AR++FDE+P RD SW ++ + + E L M + L + +
Sbjct: 43 LAAARRVFDEVPRRDEVSWNALLAAHAASGAHPEAWRLLRAMHAQG-----LASNTFALG 97
Query: 122 CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH 181
L++ +G Q+ L K G + N+ +L++ Y K + DA VF +
Sbjct: 98 SALRSAAVARRPAIGAQLQSLALKSGLANNVFAASALLDVYAKCGRVRDARQVFDGMPER 157
Query: 182 NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC--GR 239
NTV W A I G F EM RE + + TF+S+L A G +C
Sbjct: 158 NTVSWNALIAGYTESGDMASALELFLEMEREGLVPDEATFASLLTAVEGP----SCFLMH 213
Query: 240 QMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRN 299
Q+H IVK G V + Y +C L+D+ R+F+ I D +++ SWNAML Y N
Sbjct: 214 QLHGKIVKYGSALGLTVLNAAITAYSQCGSLKDSRRIFDGIGDIRDLISWNAMLGAYTHN 273
Query: 300 GLYVEATK-FLYLMKASGIQIQESLINDLRIACS 332
G+ EA K F+ +M+ SG+ + +CS
Sbjct: 274 GMDDEAMKFFVRMMQESGVHPDMYSFTSIISSCS 307
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/275 (28%), Positives = 131/275 (47%), Gaps = 12/275 (4%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL ++ CG++ ARQ+FD MP R+ SW +I GY + D + LF EM +
Sbjct: 134 LLDVYAKCGRVRDARQVFDGMPERNTVSWNALIAGYTESGDMASALELFLEMEREG---- 189
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+ P L V + L Q+HG + K GS+ +++ + I Y + L+D+
Sbjct: 190 --LVPDEATFASLLTAVEGPSCFLMHQLHGKIVKYGSALGLTVLNAAITAYSQCGSLKDS 247
Query: 172 DFVFSQLKR-HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRER-IKKNSYTFSSVLKACG 229
+F + + + W A + G + F M +E + + Y+F+S++ +C
Sbjct: 248 RRIFDGIGDIRDLISWNAMLGAYTHNGMDDEAMKFFVRMMQESGVHPDMYSFTSIISSCS 307
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCR---LLRDAERVFELIVDKKNI 286
D + GR +H ++K LE V L+ MY + ++ DA + F +V K +
Sbjct: 308 EHGHDDHQGRVIHGLVIKSALEGVTPVCNALIAMYTRYNENCMMEDAYKCFNSLVLKDTV 367
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQE 321
SWN+ML GY ++GL +A KF M + ++ E
Sbjct: 368 -SWNSMLTGYSQHGLSADALKFFRCMCSENVRTDE 401
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 70/260 (26%), Positives = 119/260 (45%), Gaps = 11/260 (4%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEM-PLRDFNSWAVMIVGYVDVADYQECITLFAEMM 104
L LN + + CG L +R++FD + +RD SW M+ Y E + F MM
Sbjct: 228 LTVLNAAITAYSQCGSLKDSRRIFDGIGDIRDLISWNAMLGAYTHNGMDDEAMKFFVRMM 287
Query: 105 KRKKGHM-LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYG 163
+ H + F + I C + G+ +HGL+ K + +LI Y
Sbjct: 288 QESGVHPDMYSFTSIISSCSEHG----HDDHQGRVIHGLVIKSALEGVTPVCNALIAMYT 343
Query: 164 KFR---CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYT 220
++ +EDA F+ L +TV W + + + G F+ M E ++ + Y
Sbjct: 344 RYNENCMMEDAYKCFNSLVLKDTVSWNSMLTGYSQHGLSADALKFFRCMCSENVRTDEYA 403
Query: 221 FSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELI 280
FS+ L++ + G+Q+H ++ G S+++V L+ MY K ++ DA + FE
Sbjct: 404 FSAALRSSSELAVL-QLGKQIHGLVIHSGFASNDFVSSSLIFMYSKSGIIDDARKSFEE- 461
Query: 281 VDKKNIASWNAMLVGYIRNG 300
DK + WNAM+ GY ++G
Sbjct: 462 ADKSSSVPWNAMIFGYAQHG 481
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 67/293 (22%), Positives = 126/293 (43%), Gaps = 14/293 (4%)
Query: 8 ITTDMY--TCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQ---L 62
+ DMY T +I C+ +++ + + ++ N L+ M+ + +
Sbjct: 292 VHPDMYSFTSIISSCSEHGHDDHQGRVIHGLVIKSALEGVTPVCNALIAMYTRYNENCMM 351
Query: 63 DTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVC 122
+ A + F+ + L+D SW M+ GY + + F M F A
Sbjct: 352 EDAYKCFNSLVLKDTVSWNSMLTGYSQHGLSADALKFFRCMCSENVRTDEYAFSA----- 406
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
L++ ++LGKQ+HGL+ G + N ++ SLI Y K ++DA F + + +
Sbjct: 407 ALRSSSELAVLQLGKQIHGLVIHSGFASNDFVSSSLIFMYSKSGIIDDARKSFEEADKSS 466
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--GGVDDDGNCGRQ 240
+V W A I + G V F EM + + + TF ++ +C G+ D+G+
Sbjct: 467 SVPWNAMIFGYAQHGQAENVDILFNEMLQRKAPLDHITFVGLITSCSHAGLVDEGSEILN 526
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
+ L + Y CG VD+YG+ L A+++ + + + + W +L
Sbjct: 527 TMETKYGVPLRMEHYA-CG-VDLYGRAGQLDKAKKLIDSMPFEPDAMVWMTLL 577
>gi|4455294|emb|CAB36829.1| putative protein [Arabidopsis thaliana]
gi|7268069|emb|CAB78407.1| putative protein [Arabidopsis thaliana]
Length = 1024
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/274 (29%), Positives = 142/274 (51%), Gaps = 16/274 (5%)
Query: 29 AFELLNHIRKRV---NIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIV 85
AF+++ I R+ ++ + + N L+ ++ G +D AR++FD + L+D +SW MI
Sbjct: 162 AFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMIS 221
Query: 86 GYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLF 144
G E I LF +M ++L + P + VL AC ++E+G+Q+HGL+
Sbjct: 222 GLSKNECEAEAIRLFCDM------YVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVL 275
Query: 145 KLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFN 204
KLG S + + +L++ Y L A+ +FS + + + V + I + G+ +
Sbjct: 276 KLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAME 335
Query: 205 DFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC--GRQMHANIVKIGLESDEYVQCGLVD 262
FK M + ++ +S T +S++ AC DG G+Q+HA K+G S+ ++ L++
Sbjct: 336 LFKRMHLDGLEPDSNTLASLVVACSA---DGTLFRGQQLHAYTTKLGFASNNKIEGALLN 392
Query: 263 MYGKCRLLRDAERVFELIVDKKNIASWNAMLVGY 296
+Y KC + A F L + +N+ WN MLV Y
Sbjct: 393 LYAKCADIETALDYF-LETEVENVVLWNVMLVAY 425
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 88/325 (27%), Positives = 144/325 (44%), Gaps = 14/325 (4%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRV---NIKPTLLFLNRLLLMHVSCGQLDTARQLF 69
Y ++K C G EL I ++ N + + L+ M+ G+LDTA +
Sbjct: 453 YPSILKTCI----RLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDIL 508
Query: 70 DEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVC 129
+D SW MI GY + +T F +M+ R + + + AC
Sbjct: 509 IRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRG-----IRSDEVGLTNAVSACAG 563
Query: 130 TMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAK 189
++ G+Q+H G S ++ +L+ Y + +E++ F Q + + + W A
Sbjct: 564 LQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNAL 623
Query: 190 IVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIG 249
+ + G+ + F M RE I N++TF S +KA + G+Q+HA I K G
Sbjct: 624 VSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQ-GKQVHAVITKTG 682
Query: 250 LESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFL 309
+S+ V L+ MY KC + DAE+ F L V KN SWNA++ Y ++G EA
Sbjct: 683 YDSETEVCNALISMYAKCGSISDAEKQF-LEVSTKNEVSWNAIINAYSKHGFGSEALDSF 741
Query: 310 YLMKASGIQIQESLINDLRIACSSI 334
M S ++ + + ACS I
Sbjct: 742 DQMIHSNVRPNHVTLVGVLSACSHI 766
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 79/290 (27%), Positives = 131/290 (45%), Gaps = 9/290 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ ++ G L +A +F M RD ++ +I G ++ + LF M
Sbjct: 287 NALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRM------ 340
Query: 110 HMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
H+ + P + + ++ AC + G+Q+H KLG + N + G+L+N Y K +
Sbjct: 341 HLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADI 400
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
E A F + + N V+W +V F F++M E I N YT+ S+LK C
Sbjct: 401 ETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTC 460
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
+ D G Q+H+ I+K + + YV L+DMY K L A + + K++ S
Sbjct: 461 IRLGD-LELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDIL-IRFAGKDVVS 518
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASK 338
W M+ GY + +A M GI+ E + + AC+ + A K
Sbjct: 519 WTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALK 568
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/266 (25%), Positives = 119/266 (44%), Gaps = 7/266 (2%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL ++ C ++TA F E + + W VM+V Y + D + +F +M +
Sbjct: 390 LLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPN 449
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+P+ +LK C+ ++ELG+Q+H + K N + LI+ Y K L+ A
Sbjct: 450 QYTYPS-----ILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTA 504
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
+ + + V WT I + + F++M I+ + ++ + AC G+
Sbjct: 505 WDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGL 564
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
G+Q+HA G SD Q LV +Y +C + ++ FE NIA WNA
Sbjct: 565 QALKE-GQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIA-WNA 622
Query: 292 MLVGYIRNGLYVEATKFLYLMKASGI 317
++ G+ ++G EA + M GI
Sbjct: 623 LVSGFQQSGNNEEALRVFVRMNREGI 648
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 112/250 (44%), Gaps = 9/250 (3%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L F N L+ ++ CG+++ + F++ D +W ++ G+ + +E + +F M +
Sbjct: 586 LPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNR 645
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
+ F + +KA T NM+ GKQVH ++ K G + +LI+ Y K
Sbjct: 646 EGIDNNNFTFGS-----AVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKC 700
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
+ DA+ F ++ N V W A I + G + + F +M ++ N T VL
Sbjct: 701 GSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVL 760
Query: 226 KACG--GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
AC G+ D G + + + + + YV C +VDM + LL A+ + + K
Sbjct: 761 SACSHIGLVDKGIAYFESMNSEYGLSPKPEHYV-C-VVDMLTRAGLLSRAKEFIQEMPIK 818
Query: 284 KNIASWNAML 293
+ W +L
Sbjct: 819 PDALVWRTLL 828
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 75/279 (26%), Positives = 123/279 (44%), Gaps = 16/279 (5%)
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI 119
G L A ++FDEMP R +W MI E LF M+ F
Sbjct: 94 GDLYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSG-- 151
Query: 120 IVCVLKACV-CTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL 178
VL+AC ++ ++ +Q+H + G + + LI+ Y + ++ A VF L
Sbjct: 152 ---VLEACRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGL 208
Query: 179 KRHNTVVWTAKIV----NNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDD 234
+ + W A I N C E ++F D +G I Y FSSVL AC + +
Sbjct: 209 RLKDHSSWVAMISGLSKNEC-EAEAIRLFCDMYVLG---IMPTPYAFSSVLSACKKI-ES 263
Query: 235 GNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLV 294
G Q+H ++K+G SD YV LV +Y L AE +F + +++ ++N ++
Sbjct: 264 LEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNM-SQRDAVTYNTLIN 322
Query: 295 GYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSS 333
G + G +A + M G++ + + L +ACS+
Sbjct: 323 GLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSA 361
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 98/218 (44%), Gaps = 2/218 (0%)
Query: 123 VLKACVCTM-NMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH 181
+L+ C+ T +++ G+++H + KLG N L+ L +FY L A VF ++
Sbjct: 50 LLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPER 109
Query: 182 NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQM 241
W I +VF F M E + N TFS VL+AC G + Q+
Sbjct: 110 TIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQI 169
Query: 242 HANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGL 301
HA I+ GL V L+D+Y + + A RVF+ + K+ +SW AM+ G +N
Sbjct: 170 HARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGL-RLKDHSSWVAMISGLSKNEC 228
Query: 302 YVEATKFLYLMKASGIQIQESLINDLRIACSSISASKI 339
EA + M GI + + AC I + +I
Sbjct: 229 EAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEI 266
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 214 IKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDA 273
I+ N T +L+ C + + GR++H+ I+K+GL+S+ + L D Y L A
Sbjct: 40 IRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGA 99
Query: 274 ERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
+VF+ + ++ I +WN M+ L E M + + E + + AC
Sbjct: 100 FKVFDEM-PERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEAC 156
>gi|449499218|ref|XP_004160754.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Cucumis sativus]
Length = 766
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 85/288 (29%), Positives = 142/288 (49%), Gaps = 18/288 (6%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLR-DFNS-WAVMIVGYVDVADYQECITLFAEMMKRKKG 109
L+ M+ CG L AR +F+ + FN+ W MI GY+ ++ + LFA+M +
Sbjct: 313 LIDMNSKCGSLQEARSIFNSHFITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQND-- 370
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRN-ISLTGSLINFYGKFRCL 168
+ + V A + LGK+VH K G N +S++ ++ N Y K L
Sbjct: 371 ---IYLDHYTYCSVFNAIAALKCLSLGKKVHARAIKSGLEVNYVSISNAVANAYAKCGSL 427
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
ED VF++++ + + WT+ + + + + F M E I N +TFSSVL +C
Sbjct: 428 EDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSC 487
Query: 229 GGVDDDGNC----GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
+ C G+Q+H I K+GL+ D+ ++ LVDMY KC L DA++VF I +
Sbjct: 488 ANL-----CLLEYGQQVHGIICKVGLDMDKCIESALVDMYAKCGCLGDAKKVFNRISNAD 542
Query: 285 NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+ SW A++ G+ ++G+ +A + M G++ + ACS
Sbjct: 543 TV-SWTAIIAGHAQHGIVDDALQLFRRMVQLGVEPNAVTFLCVLFACS 589
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/280 (27%), Positives = 139/280 (49%), Gaps = 11/280 (3%)
Query: 36 IRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQE 95
++ + + +L+ LN + + C +D A +LFD+M R+ SW V+I G + + +
Sbjct: 95 LKSKFSNHHSLVLLNHVAHAYSKCSDIDAACRLFDQMSQRNTFSWTVLIAGLAENGLFLD 154
Query: 96 CITLFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISL 154
F EM + +FP + +L+ C+ ++ELG VH + G + + +
Sbjct: 155 GFEFFCEMQSQG------IFPDQFAYSGILQICIGLDSIELGNMVHAQIVIRGFTSHTFV 208
Query: 155 TGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERI 214
+ +L+N Y K + +ED+ VF+ + N V W A I + F+ F M E +
Sbjct: 209 STALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSNDLYLDAFDLFLRMMGEGV 268
Query: 215 KKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAE 274
++ TF V KA G + D N +++ +++G++S+ V L+DM KC L++A
Sbjct: 269 TPDAQTFIGVAKAIGML-RDVNKAKEVSGYALELGVDSNTLVGTALIDMNSKCGSLQEAR 327
Query: 275 RVF--ELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLM 312
+F I + N A WNAM+ GY+R+G +A + M
Sbjct: 328 SIFNSHFITCRFN-APWNAMISGYLRSGFNEKALELFAKM 366
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 79/301 (26%), Positives = 138/301 (45%), Gaps = 47/301 (15%)
Query: 56 HVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVF 115
+ CG L+ R++F+ M RD SW ++ Y +++ + I +F+ M F
Sbjct: 421 YAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTF 480
Query: 116 PAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVF 175
+ ++ C A +C + E G+QVHG++ K+G + + +L++ Y K CL DA VF
Sbjct: 481 SSVLVSC---ANLCLL--EYGQQVHGIICKVGLDMDKCIESALVDMYAKCGCLGDAKKVF 535
Query: 176 SQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--GGVDD 233
+++ +TV WTA I + + G F+ M + ++ N+ TF VL AC GG+ +
Sbjct: 536 NRISNADTVSWTAIIAGHAQHGIVDDALQLFRRMVQLGVEPNAVTFLCVLFACSHGGLVE 595
Query: 234 DG--------------------NC-----GRQMHAN-----IVKIGLESDEYVQCGLVDM 263
+G C R H N I ++ +E +E V L+
Sbjct: 596 EGLQYFKLMKKTYGLVPEMEHYACIVDLLSRVGHLNDAMEFISRMPVEPNEMVWQTLL-- 653
Query: 264 YGKCRLLRDAERVFELIVDK------KNIASWNAMLVGYIRNGLYVEATKFLYLMKASGI 317
G CR+ + E + EL K +N A++ + YI +G Y + ++MK G+
Sbjct: 654 -GACRVHGNVE-LGELAAQKILSFKAENSATYVLLSNTYIESGSYKDGLSLRHVMKEQGV 711
Query: 318 Q 318
+
Sbjct: 712 K 712
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 99/200 (49%), Gaps = 4/200 (2%)
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFK--LGSSRNISLTGSLINFYGKFRCLEDADFVFSQ 177
+V +L+ CV ++ K VHG L K + ++ L + + Y K ++ A +F Q
Sbjct: 71 LVDLLRDCVDARFLKQAKTVHGFLLKSKFSNHHSLVLLNHVAHAYSKCSDIDAACRLFDQ 130
Query: 178 LKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC 237
+ + NT WT I G F F F EM + I + + +S +L+ C G+D
Sbjct: 131 MSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDSI-EL 189
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYI 297
G +HA IV G S +V L++MY K + + D+ +VF + + N+ SWNAM+ G+
Sbjct: 190 GNMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTE-VNVVSWNAMITGFT 248
Query: 298 RNGLYVEATKFLYLMKASGI 317
N LY++A M G+
Sbjct: 249 SNDLYLDAFDLFLRMMGEGV 268
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 78/317 (24%), Positives = 144/317 (45%), Gaps = 23/317 (7%)
Query: 29 AFELLNHIRKRVNIK--PTLLFLNRLLL-MHVSCGQLDTARQLFDEMPLRDFNSWAVMIV 85
+ EL N + ++ I+ + F++ LL M+ +++ + ++F+ M + SW MI
Sbjct: 186 SIELGNMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMIT 245
Query: 86 GYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLF 144
G+ Y + LF MM V P A + V KA ++ K+V G
Sbjct: 246 GFTSNDLYLDAFDLFLRMMGEG------VTPDAQTFIGVAKAIGMLRDVNKAKEVSGYAL 299
Query: 145 KLGSSRNISLTGSLINFYGKFRCLEDADFVFSQ--LKRHNTVVWTAKIVNNCREGHFHQV 202
+LG N + +LI+ K L++A +F+ + W A I R G +
Sbjct: 300 ELGVDSNTLVGTALIDMNSKCGSLQEARSIFNSHFITCRFNAPWNAMISGYLRSGFNEKA 359
Query: 203 FNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC---GRQMHANIVKIGLESDEYVQC- 258
F +M + I + YT+ SV A + C G+++HA +K GLE + YV
Sbjct: 360 LELFAKMCQNDIYLDHYTYCSVFNAIAAL----KCLSLGKKVHARAIKSGLEVN-YVSIS 414
Query: 259 -GLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGI 317
+ + Y KC L D +VF + D+ ++ SW +++ Y + + +A + M+A GI
Sbjct: 415 NAVANAYAKCGSLEDVRKVFNRMEDR-DLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGI 473
Query: 318 QIQESLINDLRIACSSI 334
+ + + ++C+++
Sbjct: 474 APNQFTFSSVLVSCANL 490
>gi|449437940|ref|XP_004136748.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g52630-like [Cucumis sativus]
Length = 598
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/249 (30%), Positives = 126/249 (50%), Gaps = 12/249 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+ L+ M+ CG++ AR LFDEMP R+ SW+ MI GY + D E +TLF + +
Sbjct: 165 SSLVDMYAKCGEIGDARHLFDEMPERNVVSWSGMIYGYAQLDDGVEALTLFKQALIEDVD 224
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
F + V++ C + +ELGK +HGL K+ + + +LI+ Y K +E
Sbjct: 225 VNDFTFSS-----VIRVCSSSTFLELGKLIHGLCLKMSFDSSSFVGSALISLYSKCGVIE 279
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC- 228
A VF ++ N +W + ++ + H +VF F+EMG +K N +F SVL AC
Sbjct: 280 GAYQVFDEIPTRNLGLWNSMLIACAQHAHTQRVFGLFEEMGNVGMKPNFISFLSVLYACS 339
Query: 229 --GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
G V+ GR+ + + G+E + LVD+ G+ L++A V + + +
Sbjct: 340 HAGLVEK----GREYFSLMRDYGIEPETEHYASLVDLLGRAGKLQEAVSVIKQMPMRPTE 395
Query: 287 ASWNAMLVG 295
+ W A+L G
Sbjct: 396 SVWGALLTG 404
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 107/232 (46%), Gaps = 13/232 (5%)
Query: 67 QLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK---RKKGHMLLVFPAWIIVCV 123
Q+FDE P + +W+ +I + + F M+ R H ++P+
Sbjct: 81 QVFDETPKKSSTTWSSVISAFAQNEAPLLALQFFRRMLNDGVRPDDH---IYPS-----A 132
Query: 124 LKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNT 183
KAC ++GK VH L K G ++ + SL++ Y K + DA +F ++ N
Sbjct: 133 TKACGFLRRSDVGKSVHCLAVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMPERNV 192
Query: 184 VVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHA 243
V W+ I + + FK+ E + N +TFSSV++ C G+ +H
Sbjct: 193 VSWSGMIYGYAQLDDGVEALTLFKQALIEDVDVNDFTFSSVIRVCSS-STFLELGKLIHG 251
Query: 244 NIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
+K+ +S +V L+ +Y KC ++ A +VF+ I +N+ WN+ML+
Sbjct: 252 LCLKMSFDSSSFVGSALISLYSKCGVIEGAYQVFDEI-PTRNLGLWNSMLIA 302
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 94/204 (46%), Gaps = 2/204 (0%)
Query: 130 TMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAK 189
+ ++ G Q+H + K G ++ +LIN Y K + + VF + + ++ W++
Sbjct: 38 SRSLRQGLQLHAHILKFGLQTIPLVSHNLINLYSKTQLPLFSLQVFDETPKKSSTTWSSV 97
Query: 190 IVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIG 249
I + F+ M + ++ + + + S KACG + + G+ +H VK G
Sbjct: 98 ISAFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGFLRRS-DVGKSVHCLAVKTG 156
Query: 250 LESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFL 309
D +V LVDMY KC + DA +F+ + ++ N+ SW+ M+ GY + VEA
Sbjct: 157 YYCDVFVGSSLVDMYAKCGEIGDARHLFDEMPER-NVVSWSGMIYGYAQLDDGVEALTLF 215
Query: 310 YLMKASGIQIQESLINDLRIACSS 333
+ + + + + CSS
Sbjct: 216 KQALIEDVDVNDFTFSSVIRVCSS 239
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 64/145 (44%), Gaps = 7/145 (4%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ ++ CG ++ A Q+FDE+P R+ W M++ A Q LF EM
Sbjct: 268 LISLYSKCGVIEGAYQVFDEIPTRNLGLWNSMLIACAQHAHTQRVFGLFEEMGNVGMKPN 327
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+ F + VL AC +E G++ L+ G SL++ G+ L++A
Sbjct: 328 FISF-----LSVLYACSHAGLVEKGREYFSLMRDYGIEPETEHYASLVDLLGRAGKLQEA 382
Query: 172 DFVFSQLK-RHNTVVWTAKIVNNCR 195
V Q+ R VW A ++ CR
Sbjct: 383 VSVIKQMPMRPTESVWGA-LLTGCR 406
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 54/103 (52%), Gaps = 1/103 (0%)
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYI 297
G Q+HA+I+K GL++ V L+++Y K +L + +VF+ KK+ +W++++ +
Sbjct: 44 GLQLHAHILKFGLQTIPLVSHNLINLYSKTQLPLFSLQVFDE-TPKKSSTTWSSVISAFA 102
Query: 298 RNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKIN 340
+N + A +F M G++ + + AC + S +
Sbjct: 103 QNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGFLRRSDVG 145
>gi|297744484|emb|CBI37746.3| unnamed protein product [Vitis vinifera]
Length = 2090
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 83/275 (30%), Positives = 137/275 (49%), Gaps = 12/275 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N LL M+ ++ A +LFDEM RD SW+VMI GYV + + + LF EM
Sbjct: 175 NSLLSMYAD-NDMERAEELFDEMCERDVISWSVMIGGYVQTGEAKMALQLFLEMTSNAS- 232
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ +V VLKAC T ++ +G+ VHG++ G ++ + S+I+ Y K E
Sbjct: 233 ---IELDGITMVSVLKACANTGDISMGRSVHGVVICRGLDYDLFVGNSIIDMYSKCDDHE 289
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A F+++ NTV W + I R + + F MG+ + + T ++L++C
Sbjct: 290 SAFKAFNEMPCRNTVSWNSIISGLVRTEKHSEALSLFYSMGKAGFRADEVTLVNLLQSCK 349
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
D C + +H+ +++ G E +E+V L+D Y KC L+ A ++F+ + K+ SW
Sbjct: 350 YFVDPFQC-KFIHSIVIRWGYELNEFVINSLIDAYSKCDLIELAWKLFDRL-KTKDTVSW 407
Query: 290 NAMLVGYIRNGLYVEATKFLYLM-----KASGIQI 319
+AM+ G+ G EA M K +G+ I
Sbjct: 408 SAMIAGFNHCGKPDEAIALFQEMNQAQEKPNGVTI 442
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 83/285 (29%), Positives = 136/285 (47%), Gaps = 11/285 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR--K 107
N ++ M+ C ++A + F+EMP R+ SW +I G V + E ++LF M K +
Sbjct: 276 NSIIDMYSKCDDHESAFKAFNEMPCRNTVSWNSIISGLVRTEKHSEALSLFYSMGKAGFR 335
Query: 108 KGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
+ LV +L++C ++ K +H ++ + G N + SLI+ Y K
Sbjct: 336 ADEVTLV-------NLLQSCKYFVDPFQCKFIHSIVIRWGYELNEFVINSLIDAYSKCDL 388
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
+E A +F +LK +TV W+A I G + F+EM + + K N T S+L+A
Sbjct: 389 IELAWKLFDRLKTKDTVSWSAMIAGFNHCGKPDEAIALFQEMNQAQEKPNGVTILSLLEA 448
Query: 228 CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
V D + H ++ GL ++ V ++DMY KC + + + F+ I +KNI
Sbjct: 449 F-SVSADLKRSKWAHGIAIRRGLAAEVAVGTAILDMYAKCGEIGLSRKAFDQI-PEKNIV 506
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
SW AM+ NGL +A L MK G++ + ACS
Sbjct: 507 SWGAMIAACGMNGLARDALALLSEMKLHGLKPNVVTTLSVLSACS 551
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 78/286 (27%), Positives = 133/286 (46%), Gaps = 15/286 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N +L ++ G LD+A +FD M RD SW +MI G++ + + F ++
Sbjct: 74 NSVLDFYMKTGALDSALFVFDSMRSRDSVSWNIMIHGHLSRGASDKGLWWF------RQA 127
Query: 110 HMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
++ P +V + AC ME G ++HG + + G S+ SL++ Y +
Sbjct: 128 RVIAFEPNVSTLVLAIHACRSLGAMEEGLKMHGYIIRSGFLDIPSVQNSLLSMYAD-NDM 186
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEM-GRERIKKNSYTFSSVLKA 227
E A+ +F ++ + + W+ I + G F EM I+ + T SVLKA
Sbjct: 187 ERAEELFDEMCERDVISWSVMIGGYVQTGEAKMALQLFLEMTSNASIELDGITMVSVLKA 246
Query: 228 CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK--KN 285
C D + GR +H ++ GL+ D +V ++DMY KC D E F+ + +N
Sbjct: 247 CANTGDI-SMGRSVHGVVICRGLDYDLFVGNSIIDMYSKC---DDHESAFKAFNEMPCRN 302
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
SWN+++ G +R + EA Y M +G + E + +L +C
Sbjct: 303 TVSWNSIISGLVRTEKHSEALSLFYSMGKAGFRADEVTLVNLLQSC 348
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 72/311 (23%), Positives = 131/311 (42%), Gaps = 49/311 (15%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
+N L+ + C ++ A +LFD + +D SW+ MI G+ E I LF EM + ++
Sbjct: 376 INSLIDAYSKCDLIELAWKLFDRLKTKDTVSWSAMIAGFNHCGKPDEAIALFQEMNQAQE 435
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+ I+ +L+A + +++ K HG+ + G + +++ ++++ Y K +
Sbjct: 436 KPNGVT-----ILSLLEAFSVSADLKRSKWAHGIAIRRGLAAEVAVGTAILDMYAKCGEI 490
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+ F Q+ N V W A I G EM +K N T SVL AC
Sbjct: 491 GLSRKAFDQIPEKNIVSWGAMIAACGMNGLARDALALLSEMKLHGLKPNVVTTLSVLSAC 550
Query: 229 --GGVDDDGNCGRQMHANIVKI-GLESD-EYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
GG+ ++ G N+V+ G+E E+ C +VDM + L A + E + ++
Sbjct: 551 SHGGLVEE---GLSFFENMVQDHGVEPGLEHYSC-MVDMLSRAGKLNSAMNLIEKMPERM 606
Query: 285 NIAS--WNAMLVG----------------------------------YIRNGLYVEATKF 308
+ W A+L Y +GL+ +A +
Sbjct: 607 RDGAGLWGALLSACRSSGNSRLGAGAAFRVLELEPQSSAGYFLASSMYAASGLWADAARM 666
Query: 309 LYLMKASGIQI 319
+L+KA G+++
Sbjct: 667 RWLVKARGVRV 677
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 71/153 (46%), Gaps = 13/153 (8%)
Query: 153 SLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRE 212
S S+++FY K L+ A FVF ++ ++V W I + G + F++
Sbjct: 71 STGNSVLDFYMKTGALDSALFVFDSMRSRDSVSWNIMIHGHLSRGASDKGLWWFRQARVI 130
Query: 213 RIKKNSYTFSSVLKAC---GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRL 269
+ N T + AC G +++ G +MH I++ G VQ L+ MY
Sbjct: 131 AFEPNVSTLVLAIHACRSLGAMEE----GLKMHGYIIRSGFLDIPSVQNSLLSMYAD--- 183
Query: 270 LRDAERVFELIVD--KKNIASWNAMLVGYIRNG 300
D ER EL + ++++ SW+ M+ GY++ G
Sbjct: 184 -NDMERAEELFDEMCERDVISWSVMIGGYVQTG 215
>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
Length = 710
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 85/287 (29%), Positives = 141/287 (49%), Gaps = 17/287 (5%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ + S G +++A+++FDE+P++D SW +I GY D + +E + LF EMMK
Sbjct: 175 LITGYASRGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTN---- 230
Query: 112 LLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
V P +V V+ AC + +++LG+QVH + G N+ + +LI+ Y K +E
Sbjct: 231 --VKPDESTMVTVVSACAQSGSIQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVET 288
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC-- 228
A +F L + + W I + + F+EM R N T S+L AC
Sbjct: 289 ACGLFQGLSNKDVISWNTMIGGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQ 348
Query: 229 -GGVDDDGNCGRQMHANIVK--IGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
G +D GR +H I K G+ + ++ L+DMY KC + A +VF + +
Sbjct: 349 LGAID----FGRWIHVYIDKRIKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSM-HHRT 403
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+++ NAM+ G+ +G A M+ +GI+ + L ACS
Sbjct: 404 LSACNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACS 450
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 79/322 (24%), Positives = 140/322 (43%), Gaps = 41/322 (12%)
Query: 49 LNRLL---LMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L+RLL ++ + L A +F+ + + W M G+ +D I L+ M+
Sbjct: 37 LSRLLEFCILSPNFDGLPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSAIKLYVCMIS 96
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFY--- 162
+ L+ ++ +LK+C + G+Q+HG + KLG ++ + SLI+ Y
Sbjct: 97 -----LGLLPNSYTFPFLLKSCAKLKVSKEGQQIHGHVLKLGYELDLYVHTSLISMYVKN 151
Query: 163 GKFR----------------------------CLEDADFVFSQLKRHNTVVWTAKIVNNC 194
G+++ +E A +F ++ + V W A I
Sbjct: 152 GRWKDAHKVFDGSSHRDVVSYTALITGYASRGYIESAQKMFDEIPVKDVVSWNAIISGYA 211
Query: 195 REGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDE 254
G+ + + FKEM + +K + T +V+ AC GRQ+H+ I GL S+
Sbjct: 212 DTGNNKEALDLFKEMMKTNVKPDESTMVTVVSACAQ-SGSIQLGRQVHSWIDDHGLGSNL 270
Query: 255 YVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKA 314
+ L+D+Y KC + A +F+ + +K ++ SWN M+ GY LY EA M
Sbjct: 271 KIVNALIDLYSKCGEVETACGLFQGLSNK-DVISWNTMIGGYTHLNLYKEALLLFQEMLR 329
Query: 315 SGIQIQESLINDLRIACSSISA 336
SG + + + AC+ + A
Sbjct: 330 SGENPNDVTMLSILPACAQLGA 351
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 117/253 (46%), Gaps = 13/253 (5%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L +N L+ ++ CG+++TA LF + +D SW MI GY + Y+E + LF EM++
Sbjct: 270 LKIVNALIDLYSKCGEVETACGLFQGLSNKDVISWNTMIGGYTHLNLYKEALLLFQEMLR 329
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKL--GSSRNISLTGSLINFYG 163
+ + ++ +L AC ++ G+ +H + K G + SL SLI+ Y
Sbjct: 330 SGENPNDVT-----MLSILPACAQLGAIDFGRWIHVYIDKRIKGVTNASSLRTSLIDMYA 384
Query: 164 KFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSS 223
K +E A VF+ + A I G + F+ F M + I+ + TF
Sbjct: 385 KCGDIEAAHQVFNSMHHRTLSACNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVG 444
Query: 224 VLKAC---GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELI 280
+L AC G +D R M N KI + + Y C ++D+ G L ++AE + +
Sbjct: 445 LLSACSHSGMLDLGRRIFRSMTQN-YKITPKLEHY-GC-MIDLLGHLGLFKEAEEMINTM 501
Query: 281 VDKKNIASWNAML 293
+ + W ++L
Sbjct: 502 TMEPDGVIWCSLL 514
>gi|224131918|ref|XP_002328140.1| predicted protein [Populus trichocarpa]
gi|222837655|gb|EEE76020.1| predicted protein [Populus trichocarpa]
Length = 534
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 86/286 (30%), Positives = 140/286 (48%), Gaps = 12/286 (4%)
Query: 47 LFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR 106
+N L+ M+V G L A+ +FD+MP R+ SW MI Y + + M++
Sbjct: 1 FLINILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLRE 60
Query: 107 KKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166
+ + + VL+AC N+ +Q+H + K+G ++ + +LI+ Y ++
Sbjct: 61 GVRPNMFTYSS-----VLRACDGLFNL---RQLHCCIIKIGLDSDVFVRSALIDVYSRWG 112
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
LE+A VF ++ + VVW++ I + + FK M R T +SVL+
Sbjct: 113 ELENALRVFDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLR 172
Query: 227 ACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
AC G+ GRQ+H +++K + D + L+DMY KC L DA VF +V+ K++
Sbjct: 173 ACTGL-ALLELGRQVHVHVLK--YDQDLILNNALLDMYCKCGSLEDANAVFVRMVE-KDV 228
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
SW+ M+ G +NG EA K MK GI+ I + ACS
Sbjct: 229 ISWSTMIAGLAQNGYSKEALKLFESMKVLGIKPNYVTIVGVLFACS 274
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 98/182 (53%), Gaps = 5/182 (2%)
Query: 154 LTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRER 213
L LIN Y KF L DA VF ++ N V WT I + M RE
Sbjct: 2 LINILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLREG 61
Query: 214 IKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDA 273
++ N +T+SSVL+AC G+ + RQ+H I+KIGL+SD +V+ L+D+Y + L +A
Sbjct: 62 VRPNMFTYSSVLRACDGLFN----LRQLHCCIIKIGLDSDVFVRSALIDVYSRWGELENA 117
Query: 274 ERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSS 333
RVF+ +V ++ W++++ G+ +N EA + MK +G Q++ + + AC+
Sbjct: 118 LRVFDEMV-TGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTG 176
Query: 334 IS 335
++
Sbjct: 177 LA 178
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/268 (24%), Positives = 121/268 (45%), Gaps = 33/268 (12%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
++ + + + L+ ++ G+L+ A ++FDEM D W+ +I G+ +D E +
Sbjct: 91 KIGLDSDVFVRSALIDVYSRWGELENALRVFDEMVTGDLVVWSSIIAGFAQNSDGDEALR 150
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
LF M ++ G + + VL+AC +ELG+QVH + K +++ L +L
Sbjct: 151 LFKRM--KRAG---FLAQQTTLTSVLRACTGLALLELGRQVHVHVLKY--DQDLILNNAL 203
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
++ Y K LEDA+ VF ++ + + W+ I + G+ + F+ M IK N
Sbjct: 204 LDMYCKCGSLEDANAVFVRMVEKDVISWSTMIAGLAQNGYSKEALKLFESMKVLGIKPNY 263
Query: 219 YTFSSVLKACGGVDDDGNCGRQMHANIVKIGL-------------ESDEYVQCGLVDMYG 265
T VL AC HA +V+ GL E+ C ++D+ G
Sbjct: 264 VTIVGVLFACS------------HAGLVEEGLYYFHSMKELFGIDPGREHYGC-MIDLLG 310
Query: 266 KCRLLRDAERVFELIVDKKNIASWNAML 293
+ L +A + + + + +W A+L
Sbjct: 311 RAGRLSEAVDLINEMECEPDAVTWRALL 338
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 66/153 (43%), Gaps = 10/153 (6%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L+ N LL M+ CG L+ A +F M +D SW+ MI G +E + LF M
Sbjct: 197 LILNNALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMIAGLAQNGYSKEALKLFESM-- 254
Query: 106 RKKGHMLLVFPAWI-IVCVLKACVCTMNMELG-KQVHGLLFKLGSSRNISLTGSLINFYG 163
+L + P ++ IV VL AC +E G H + G G +I+ G
Sbjct: 255 ----KVLGIKPNYVTIVGVLFACSHAGLVEEGLYYFHSMKELFGIDPGREHYGCMIDLLG 310
Query: 164 KF-RCLEDADFVFSQLKRHNTVVWTAKIVNNCR 195
+ R E D + + V W A ++N CR
Sbjct: 311 RAGRLSEAVDLINEMECEPDAVTWRA-LLNACR 342
>gi|449443608|ref|XP_004139569.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Cucumis sativus]
Length = 878
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/261 (29%), Positives = 132/261 (50%), Gaps = 11/261 (4%)
Query: 65 ARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVL 124
A QLFDE PL+D + + ++ + +E + LF ++ G + C L
Sbjct: 57 AHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLG-----VDGLTLSCAL 111
Query: 125 KACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTV 184
K C + +G+QVH K G ++S+ SL++ Y K ED +F ++ N V
Sbjct: 112 KVCGVLFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVV 171
Query: 185 VWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDG--NCGRQMH 242
WT+ + R G +V + +M E + N +TF++VL G + D+ G Q+H
Sbjct: 172 SWTSLLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVL---GALADESIIEGGVQVH 228
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
A IVK G E +V L+ MY K ++ DAE VF+ +V + ++ +WN M+ GY G Y
Sbjct: 229 AMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSV-TWNIMIGGYAAIGFY 287
Query: 303 VEATKFLYLMKASGIQIQESL 323
+E + + M+ +G+++ ++
Sbjct: 288 LEGFQMFHRMRLAGVKLSRTV 308
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 81/294 (27%), Positives = 133/294 (45%), Gaps = 12/294 (4%)
Query: 45 TLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMM 104
T N L+ M++ + A +FD M +RD +W +MI GY + Y E +F M
Sbjct: 239 TTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRM- 297
Query: 105 KRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
R G + + LK C + KQ+H + K G + +L+ Y K
Sbjct: 298 -RLAG---VKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSK 353
Query: 165 FRCLEDADFVFSQL-KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSS 223
+++A +FS HN V WTA I + + + + F +M RE ++ N +T+S+
Sbjct: 354 CSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNEKAVDLFCQMSREGVRPNHFTYST 413
Query: 224 VLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
VL + Q+HA I+K E V L+D Y K + ++ RVF I
Sbjct: 414 VLAG-----KPSSLLSQLHAQIIKAYYEKVPSVATALLDAYVKTGNVVESARVFYSI-PA 467
Query: 284 KNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISAS 337
K+I +W+AML G + +A + + G++ E + + ACSS +A+
Sbjct: 468 KDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAAT 521
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 71/282 (25%), Positives = 131/282 (46%), Gaps = 11/282 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEM-PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGH 110
L++ + C +D A +LF + +W MI G+V + ++ + LF +M +
Sbjct: 347 LMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNEKAVDLFCQMSREG--- 403
Query: 111 MLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
V P + A + L Q+H + K + S+ +L++ Y K + +
Sbjct: 404 ---VRPNHFTYSTVLAGKPS---SLLSQLHAQIIKAYYEKVPSVATALLDAYVKTGNVVE 457
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
+ VF + + V W+A + + + F ++ +E +K N YTFSSV+ AC
Sbjct: 458 SARVFYSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSS 517
Query: 231 VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWN 290
G+Q+HA VK G + V L+ MY K + AE+VF ++++I SWN
Sbjct: 518 SAATVEHGKQIHATAVKSGKSNALCVSSALLTMYSKKGNIESAEKVFTR-QEERDIVSWN 576
Query: 291 AMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+M+ GY ++G +A + +M+ G+ + + + AC+
Sbjct: 577 SMITGYGQHGDAKKALEVFQIMQNQGLPLDDVTFIGVLTACT 618
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 70/268 (26%), Positives = 119/268 (44%), Gaps = 8/268 (2%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M++ + R +FDEM +++ SW ++ GY E I L +M M
Sbjct: 145 LVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARNGLNDEVIHLINQM------QM 198
Query: 112 LLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
V P + VL A +E G QVH ++ K G + +LI Y K + D
Sbjct: 199 EGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGFEFTTFVCNALICMYLKSEMVGD 258
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
A+ VF + ++V W I G + + F F M +K + F + LK C
Sbjct: 259 AEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQ 318
Query: 231 VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWN 290
+ N +Q+H +VK G E + ++ L+ Y KC + +A ++F + N+ +W
Sbjct: 319 -QRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKLFSMADAAHNVVTWT 377
Query: 291 AMLVGYIRNGLYVEATKFLYLMKASGIQ 318
AM+ G+++N +A M G++
Sbjct: 378 AMIGGFVQNNNNEKAVDLFCQMSREGVR 405
>gi|449441574|ref|XP_004138557.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Cucumis sativus]
Length = 766
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 85/288 (29%), Positives = 142/288 (49%), Gaps = 18/288 (6%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLR-DFNS-WAVMIVGYVDVADYQECITLFAEMMKRKKG 109
L+ M+ CG L AR +F+ + FN+ W MI GY+ ++ + LFA+M +
Sbjct: 313 LIDMNSKCGSLQEARSIFNSHFITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQND-- 370
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRN-ISLTGSLINFYGKFRCL 168
+ + V A + LGK+VH K G N +S++ ++ N Y K L
Sbjct: 371 ---IYLDHYTYCSVFNAIAALKCLSLGKKVHARAIKSGLEVNYVSISNAVANAYAKCGSL 427
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
ED VF++++ + + WT+ + + + + F M E I N +TFSSVL +C
Sbjct: 428 EDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSC 487
Query: 229 GGVDDDGNC----GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
+ C G+Q+H I K+GL+ D+ ++ LVDMY KC L DA++VF I +
Sbjct: 488 ANL-----CLLEYGQQVHGIICKVGLDMDKCIESALVDMYAKCGCLGDAKKVFNRISNAD 542
Query: 285 NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+ SW A++ G+ ++G+ +A + M G++ + ACS
Sbjct: 543 TV-SWTAIIAGHAQHGIVDDALQLFRRMVQLGVEPNAVTFLCVLFACS 589
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/280 (27%), Positives = 139/280 (49%), Gaps = 11/280 (3%)
Query: 36 IRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQE 95
++ + + +L+ LN + + C +D A +LFD+M R+ SW V+I G + + +
Sbjct: 95 LKSKFSNHHSLVLLNHVAHAYSKCSDIDAACRLFDQMSQRNTFSWTVLIAGLAENGLFLD 154
Query: 96 CITLFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISL 154
F EM + +FP + +L+ C+ ++ELG VH + G + + +
Sbjct: 155 GFEFFCEMQSQG------IFPDQFAYSGILQICIGLDSIELGNMVHAQIVIRGFTSHTFV 208
Query: 155 TGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERI 214
+ +L+N Y K + +ED+ VF+ + N V W A I + F+ F M E +
Sbjct: 209 STALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSNDLYLDAFDLFLRMMGEGV 268
Query: 215 KKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAE 274
++ TF V KA G + D N +++ +++G++S+ V L+DM KC L++A
Sbjct: 269 TPDAQTFIGVAKAIGML-RDVNKAKEVSGYALELGVDSNTLVGTALIDMNSKCGSLQEAR 327
Query: 275 RVF--ELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLM 312
+F I + N A WNAM+ GY+R+G +A + M
Sbjct: 328 SIFNSHFITCRFN-APWNAMISGYLRSGFNEKALELFAKM 366
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 80/301 (26%), Positives = 138/301 (45%), Gaps = 47/301 (15%)
Query: 56 HVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVF 115
+ CG L+ R++F+ M RD SW ++ Y +++ + I +F+ M F
Sbjct: 421 YAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTF 480
Query: 116 PAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVF 175
+ ++ C A +C + E G+QVHG++ K+G + + +L++ Y K CL DA VF
Sbjct: 481 SSVLVSC---ANLCLL--EYGQQVHGIICKVGLDMDKCIESALVDMYAKCGCLGDAKKVF 535
Query: 176 SQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--GGVDD 233
+++ +TV WTA I + + G F+ M + ++ N+ TF VL AC GG+ +
Sbjct: 536 NRISNADTVSWTAIIAGHAQHGIVDDALQLFRRMVQLGVEPNAVTFLCVLFACSHGGLVE 595
Query: 234 DG--------------------NC-----GRQMHAN-----IVKIGLESDEYVQCGLVDM 263
+G C R H N I ++ +E +E V L+
Sbjct: 596 EGLQYFKLMKKTYGLVPEMEHYACIVDLLSRVGHLNDAMEFISRMPVEPNEMVWQTLL-- 653
Query: 264 YGKCRLLRDAERVFELIVDK------KNIASWNAMLVGYIRNGLYVEATKFLYLMKASGI 317
G CR+ + E + EL K +N A++ + YI +G Y + +LMK G+
Sbjct: 654 -GACRVHGNVE-LGELAAQKILSFKAENSATYVLLSNTYIESGSYKDGLSLRHLMKEQGV 711
Query: 318 Q 318
+
Sbjct: 712 K 712
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 99/200 (49%), Gaps = 4/200 (2%)
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFK--LGSSRNISLTGSLINFYGKFRCLEDADFVFSQ 177
+V +L+ CV ++ K VHG L K + ++ L + + Y K ++ A +F Q
Sbjct: 71 LVDLLRDCVDARFLKQAKTVHGFLLKSKFSNHHSLVLLNHVAHAYSKCSDIDAACRLFDQ 130
Query: 178 LKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC 237
+ + NT WT I G F F F EM + I + + +S +L+ C G+D
Sbjct: 131 MSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDSI-EL 189
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYI 297
G +HA IV G S +V L++MY K + + D+ +VF + + N+ SWNAM+ G+
Sbjct: 190 GNMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTE-VNVVSWNAMITGFT 248
Query: 298 RNGLYVEATKFLYLMKASGI 317
N LY++A M G+
Sbjct: 249 SNDLYLDAFDLFLRMMGEGV 268
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 78/317 (24%), Positives = 144/317 (45%), Gaps = 23/317 (7%)
Query: 29 AFELLNHIRKRVNIK--PTLLFLNRLLL-MHVSCGQLDTARQLFDEMPLRDFNSWAVMIV 85
+ EL N + ++ I+ + F++ LL M+ +++ + ++F+ M + SW MI
Sbjct: 186 SIELGNMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMIT 245
Query: 86 GYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLF 144
G+ Y + LF MM V P A + V KA ++ K+V G
Sbjct: 246 GFTSNDLYLDAFDLFLRMMGEG------VTPDAQTFIGVAKAIGMLRDVNKAKEVSGYAL 299
Query: 145 KLGSSRNISLTGSLINFYGKFRCLEDADFVFSQ--LKRHNTVVWTAKIVNNCREGHFHQV 202
+LG N + +LI+ K L++A +F+ + W A I R G +
Sbjct: 300 ELGVDSNTLVGTALIDMNSKCGSLQEARSIFNSHFITCRFNAPWNAMISGYLRSGFNEKA 359
Query: 203 FNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC---GRQMHANIVKIGLESDEYVQC- 258
F +M + I + YT+ SV A + C G+++HA +K GLE + YV
Sbjct: 360 LELFAKMCQNDIYLDHYTYCSVFNAIAAL----KCLSLGKKVHARAIKSGLEVN-YVSIS 414
Query: 259 -GLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGI 317
+ + Y KC L D +VF + D+ ++ SW +++ Y + + +A + M+A GI
Sbjct: 415 NAVANAYAKCGSLEDVRKVFNRMEDR-DLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGI 473
Query: 318 QIQESLINDLRIACSSI 334
+ + + ++C+++
Sbjct: 474 APNQFTFSSVLVSCANL 490
>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
Length = 675
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 90/291 (30%), Positives = 142/291 (48%), Gaps = 21/291 (7%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ + S G +AR++FDE+ RD SW MI GYV+ Y+E + LF EMM+
Sbjct: 136 LITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRTN---- 191
Query: 112 LLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKL----GSSRNISLTGSLINFYGKFR 166
V P +V V+ AC + ++ELG+QVH + G S ++ + +LI+ Y K
Sbjct: 192 --VRPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCG 249
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
+E A +F L + V W I + + F+EM R N T SVL
Sbjct: 250 DVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLSVLP 309
Query: 227 AC---GGVDDDGNCGRQMHANIVK--IGLESDEYVQCGLVDMYGKCRLLRDAERVFELIV 281
AC G +D GR +H I K G+ ++ ++ L+DMY KC + A +VF ++
Sbjct: 310 ACAHLGAID----IGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSML 365
Query: 282 DKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
++++SWNAM+ G+ +G A M+ + ++ + L ACS
Sbjct: 366 -YRSLSSWNAMIFGFAMHGRANAAFDLFSRMRGNRVEPDDITFVGLLSACS 415
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 81/319 (25%), Positives = 132/319 (41%), Gaps = 52/319 (16%)
Query: 62 LDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHML--LVFPAWI 119
L A +F+ + + W M+ G+ +D + ++ M+ GH+ FP
Sbjct: 14 LPYAISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSL--GHLPNSYSFP--- 68
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA-------- 171
+LK+C + E G+Q+H + KLG + + SLI+ Y + LEDA
Sbjct: 69 --FLLKSCAKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASS 126
Query: 172 ------------------DF-----VFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKE 208
DF VF ++ + V W A I G + + FKE
Sbjct: 127 HRDVVSCTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKE 186
Query: 209 MGRERIKKNSYTFSSVLKAC---GGVDDDGNCGRQMHANIVKI----GLESDEYVQCGLV 261
M R ++ + T SV+ AC G ++ GRQ+H+ + G S + L+
Sbjct: 187 MMRTNVRPDEGTLVSVVSACAQSGSIE----LGRQVHSWVDDDDDDHGFSSSLKIVNALI 242
Query: 262 DMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQE 321
D+Y KC + A +FE + K++ SWN ++ GY LY EA M SG +
Sbjct: 243 DLYSKCGDVETAFGLFEGL-SCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPND 301
Query: 322 SLINDLRIACSSISASKIN 340
+ + AC+ + A I
Sbjct: 302 VTLLSVLPACAHLGAIDIG 320
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 125/262 (47%), Gaps = 15/262 (5%)
Query: 45 TLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMM 104
+L +N L+ ++ CG ++TA LF+ + +D SW +I GY Y+E + LF EM+
Sbjct: 234 SLKIVNALIDLYSKCGDVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEML 293
Query: 105 KRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFK--LGSSRNISLTGSLINFY 162
+ + + ++ VL AC +++G+ +H + K G + SL SLI+ Y
Sbjct: 294 RSGECPNDVT-----LLSVLPACAHLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMY 348
Query: 163 GKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFS 222
K +E A VF+ + + W A I G + F+ F M R++ + TF
Sbjct: 349 AKCGDIEAAHQVFNSMLYRSLSSWNAMIFGFAMHGRANAAFDLFSRMRGNRVEPDDITFV 408
Query: 223 SVLKAC--GGVDDDGNCGRQMHANIVK-IGLESD-EYVQCGLVDMYGKCRLLRDAERVFE 278
+L AC G+ D GRQ+ ++ + L E+ C ++D+ G L ++AE +
Sbjct: 409 GLLSACSHSGLLD---LGRQIFKSMTQDYNLTPKLEHYGC-MIDLLGHSGLFKEAEEMIH 464
Query: 279 LIVDKKNIASWNAMLVGYIRNG 300
+ + + W ++L ++G
Sbjct: 465 TMPMEPDGVIWCSLLKACKKHG 486
>gi|297802056|ref|XP_002868912.1| hypothetical protein ARALYDRAFT_352947 [Arabidopsis lyrata subsp.
lyrata]
gi|297314748|gb|EFH45171.1| hypothetical protein ARALYDRAFT_352947 [Arabidopsis lyrata subsp.
lyrata]
Length = 1057
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 88/333 (26%), Positives = 152/333 (45%), Gaps = 19/333 (5%)
Query: 8 ITTDMYTC--LIKECTFQKDSAGAFELLNHIRK---RVNIKPTLLFLNRLLLMHVSCGQL 62
+ DM+ C ++ C S A E + + N+ N L+ M+ C L
Sbjct: 346 LKPDMFACSSILTSCA----SLHALEFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCL 401
Query: 63 DTARQLFDEMPLRDFNSWAVMIVGYVDVA---DYQECITLFAEMMKRKKGHMLLVFPAWI 119
AR++FD D + MI GY + + + + +F +M R LL F
Sbjct: 402 TEARKVFDIFAADDVVLFNAMIEGYSRLGTQWELHDALNIFHDMRFRLIRPSLLTF---- 457
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
V +L+A ++ L KQ+HGL+FK G + +I +LI Y CL+D+ VF ++K
Sbjct: 458 -VSLLRASASLTSLGLSKQIHGLMFKFGLNLDIFAGSALIAVYSNCYCLKDSRLVFDEMK 516
Query: 180 RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGR 239
+ V+W + ++ + N F E+ R + + +TF ++ A G + G+
Sbjct: 517 VKDLVIWNSMFSGYVQQSENEEALNLFLELQLSRDRPDEFTFVDMVTAAGNLASL-QLGQ 575
Query: 240 QMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRN 299
+ H ++K GLE + Y+ L+DMY KC DA + F+ +++ WN+++ Y +
Sbjct: 576 EFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDSAAS-RDVVCWNSVISSYANH 634
Query: 300 GLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
G +A + L M GI+ + ACS
Sbjct: 635 GEGRKALQMLEKMMCEGIEPNYITFVGVLSACS 667
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 89/338 (26%), Positives = 154/338 (45%), Gaps = 13/338 (3%)
Query: 8 ITTDMY--TCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTA 65
+ D Y + ++ C+ G ++ HI + + K L +N L+ +V CG++ A
Sbjct: 245 VVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGHEKDASL-MNVLIDSYVKCGRVRAA 303
Query: 66 RQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLK 125
+LFD MP ++ SW ++ GY + ++E + LF M K L + +L
Sbjct: 304 HKLFDGMPNKNIISWTTLLSGYKQNSLHKEAMELFTSMPK-----FGLKPDMFACSSILT 358
Query: 126 ACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVV 185
+C +E G QVH K + +T SLI+ Y K CL +A VF + V+
Sbjct: 359 SCASLHALEFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTEARKVFDIFAADDVVL 418
Query: 186 WTAKIVNNCREG---HFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
+ A I R G H N F +M I+ + TF S+L+A + G +Q+H
Sbjct: 419 FNAMIEGYSRLGTQWELHDALNIFHDMRFRLIRPSLLTFVSLLRASASLTSLG-LSKQIH 477
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
+ K GL D + L+ +Y C L+D+ VF+ + K++ WN+M GY++
Sbjct: 478 GLMFKFGLNLDIFAGSALIAVYSNCYCLKDSRLVFDEM-KVKDLVIWNSMFSGYVQQSEN 536
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIACSSISASKIN 340
EA ++ S + E D+ A ++++ ++
Sbjct: 537 EEALNLFLELQLSRDRPDEFTFVDMVTAAGNLASLQLG 574
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/242 (30%), Positives = 121/242 (50%), Gaps = 9/242 (3%)
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI 119
G +D AR +FD +P + +W MI G V + + LF ++M+ +V +I
Sbjct: 197 GNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEGN-----VVPDGYI 251
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
+ VL AC +E GKQ+H + + G ++ SL LI+ Y K + A +F +
Sbjct: 252 LSTVLSACSILPFLEGGKQIHAHILRYGHEKDASLMNVLIDSYVKCGRVRAAHKLFDGMP 311
Query: 180 RHNTVVWTAKIVNNCREGHFH-QVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCG 238
N + WT +++ ++ H + F M + +K + + SS+L +C + G
Sbjct: 312 NKNIISWTT-LLSGYKQNSLHKEAMELFTSMPKFGLKPDMFACSSILTSCASLHAL-EFG 369
Query: 239 RQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIR 298
Q+HA +K L +D YV L+DMY KC L +A +VF+ I ++ +NAM+ GY R
Sbjct: 370 TQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTEARKVFD-IFAADDVVLFNAMIEGYSR 428
Query: 299 NG 300
G
Sbjct: 429 LG 430
Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 78/290 (26%), Positives = 142/290 (48%), Gaps = 10/290 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ ++ G + AR++F++MP R+ +W+ M+ Y+E + +F + + +K
Sbjct: 83 NILMNLYSRAGGMVYARKVFEKMPERNLVTWSTMVSACNHHGFYEESLVVFLDFWRTRKN 142
Query: 110 HMLLVFP-AWIIVCVLKAC--VCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166
P +I+ ++AC + + Q+ L K R++ + LI+FY K
Sbjct: 143 S-----PNEYILSSFIQACSGLDGSGRWMVFQLQSFLVKSRFDRDVYVGTLLIDFYLKEG 197
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
++ A VF L +TV WT I + G + F ++ + + Y S+VL
Sbjct: 198 NIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEGNVVPDGYILSTVLS 257
Query: 227 ACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
AC + G+Q+HA+I++ G E D + L+D Y KC +R A ++F+ + + KNI
Sbjct: 258 AC-SILPFLEGGKQIHAHILRYGHEKDASLMNVLIDSYVKCGRVRAAHKLFDGMPN-KNI 315
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
SW +L GY +N L+ EA + M G++ + + +C+S+ A
Sbjct: 316 ISWTTLLSGYKQNSLHKEAMELFTSMPKFGLKPDMFACSSILTSCASLHA 365
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 94/202 (46%), Gaps = 15/202 (7%)
Query: 139 VHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGH 198
VHG + G + L+ L+N Y + + A VF ++ N V W+ +V+ C
Sbjct: 66 VHGQIIVSGLELDTYLSNILMNLYSRAGGMVYARKVFEKMPERNLVTWST-MVSACNHHG 124
Query: 199 FHQ----VFNDFKEMGRERIKKNS---YTFSSVLKACGGVDDDGNCGR-QMHANIVKIGL 250
F++ VF DF R +KNS Y SS ++AC G+D G Q+ + +VK
Sbjct: 125 FYEESLVVFLDFW-----RTRKNSPNEYILSSFIQACSGLDGSGRWMVFQLQSFLVKSRF 179
Query: 251 ESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLY 310
+ D YV L+D Y K + A VF+ + +K + +W M+ G ++ G + + Y
Sbjct: 180 DRDVYVGTLLIDFYLKEGNIDYARLVFDALPEKSTV-TWTTMISGCVKMGRSYVSLQLFY 238
Query: 311 LMKASGIQIQESLINDLRIACS 332
+ + +++ + ACS
Sbjct: 239 QLMEGNVVPDGYILSTVLSACS 260
>gi|302802776|ref|XP_002983142.1| hypothetical protein SELMODRAFT_117546 [Selaginella moellendorffii]
gi|300149295|gb|EFJ15951.1| hypothetical protein SELMODRAFT_117546 [Selaginella moellendorffii]
Length = 544
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 87/320 (27%), Positives = 150/320 (46%), Gaps = 11/320 (3%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
Y +++ C K ++ ++IR + +L N L+ M++ CG L A+++FDEM
Sbjct: 10 YARVLRVCAKNKALQQGKKIHSYIRDSGQEQDRILG-NHLIEMYLKCGSLRDAQRMFDEM 68
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN 132
RD W MI Y + Y+ + LF M + F V VL C
Sbjct: 69 VSRDAILWTSMISAYSERGHYKTALKLFQRMQGESVKPDNVTF-----VTVLNCCGKMSA 123
Query: 133 MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192
++ GK +H L G ++ + +L+N YGK L DA VF +++ + + W A +
Sbjct: 124 LQEGKLIHSQLTGNGFENDLIVKTALLNMYGKCGSLTDARKVFEEIQGKDIITWNAMLSV 183
Query: 193 NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLES 252
+ + + +++M + + TF +V+ AC G + GRQ+HA + GLE+
Sbjct: 184 YVQHSAYEEALELYRKM---ELTPSVSTFVTVINACAGATALED-GRQVHAVVTARGLET 239
Query: 253 DEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLM 312
++ V L++MYGKC L DA +VF + ++A W M+ Y + EA LM
Sbjct: 240 EDAVSSALLNMYGKCGSLEDAAKVFWKRREYDDVA-WAHMISFYTQWHRSKEALGLFRLM 298
Query: 313 KASGIQIQESLINDLRIACS 332
+ G+++ + AC+
Sbjct: 299 RLEGVRVDKFAFTTTLSACN 318
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 82/262 (31%), Positives = 131/262 (50%), Gaps = 16/262 (6%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L+ LL M+ CG L AR++F+E+ +D +W M+ YV + Y+E + L+
Sbjct: 143 LIVKTALLNMYGKCGSLTDARKVFEEIQGKDIITWNAMLSVYVQHSAYEEALELY----- 197
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
RK M L V V+ AC +E G+QVH ++ G +++ +L+N YGK
Sbjct: 198 RK---MELTPSVSTFVTVINACAGATALEDGRQVHAVVTARGLETEDAVSSALLNMYGKC 254
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
LEDA VF + + ++ V W I + + F+ M E ++ + + F++ L
Sbjct: 255 GSLEDAAKVFWKRREYDDVAWAHMISFYTQWHRSKEALGLFRLMRLEGVRVDKFAFTTTL 314
Query: 226 KACGGVDDDGNC---GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282
AC G + C GR +HA I + G ESD V+ L+ MYG+C L A +F+ V
Sbjct: 315 SACNGAE----CLAEGRLLHAGIEESGFESDVVVRSALIHMYGRCGLYDAAWELFQ-SVP 369
Query: 283 KKNIASWNAMLVGYIRNGLYVE 304
KN+ +AM+ R+G + E
Sbjct: 370 TKNVLLSSAMIATCERHGHWRE 391
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 77/282 (27%), Positives = 135/282 (47%), Gaps = 15/282 (5%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL M+ CG L+ A ++F + D +WA MI Y +E + LF M R +G
Sbjct: 247 LLNMYGKCGSLEDAAKVFWKRREYDDVAWAHMISFYTQWHRSKEALGLFRLM--RLEGVR 304
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+ F L AC + G+ +H + + G ++ + +LI+ YG+ + A
Sbjct: 305 VDKFA---FTTTLSACNGAECLAEGRLLHAGIEESGFESDVVVRSALIHMYGRCGLYDAA 361
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
+F + N ++ +A I R GH+ ++ + ++ + K T SVLKAC +
Sbjct: 362 WELFQSVPTKNVLLSSAMIATCERHGHWRELLDVYQNVQSVPYK---LTIISVLKACAEL 418
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
+ G+ +H +I L D ++ L+ MY KC L DA+ +F+ D K+ A WNA
Sbjct: 419 QELER-GKAVHESIKGKDLYQDGGIREALLGMYCKCGALEDAQNLFDRTPD-KSTAFWNA 476
Query: 292 MLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSS 333
+L Y++ G A++ M+A+ ++ N++ +AC S
Sbjct: 477 LLDAYVKQGQLERASELFEQMQANDVE-----ANEITVACVS 513
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/219 (21%), Positives = 89/219 (40%), Gaps = 14/219 (6%)
Query: 6 LPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTA 65
TT + C EC + LL+ + + ++ + L+ M+ CG D A
Sbjct: 308 FAFTTTLSACNGAECLAEG------RLLHAGIEESGFESDVVVRSALIHMYGRCGLYDAA 361
Query: 66 RQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLK 125
+LF +P ++ + MI ++E + ++ + V I+ VLK
Sbjct: 362 WELFQSVPTKNVLLSSAMIATCERHGHWRELLDVYQNVQS--------VPYKLTIISVLK 413
Query: 126 ACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVV 185
AC +E GK VH + ++ + +L+ Y K LEDA +F + +T
Sbjct: 414 ACAELQELERGKAVHESIKGKDLYQDGGIREALLGMYCKCGALEDAQNLFDRTPDKSTAF 473
Query: 186 WTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
W A + ++G + F++M ++ N T + V
Sbjct: 474 WNALLDAYVKQGQLERASELFEQMQANDVEANEITVACV 512
>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
Length = 771
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/283 (29%), Positives = 138/283 (48%), Gaps = 11/283 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL M+ CG L ARQLF+ + + SW MI G + +E LF M +
Sbjct: 238 LLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEEN---- 293
Query: 112 LLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
+FP I ++ ++ C T ++LGKQ+H + + G S +++L +L++ YGK + +
Sbjct: 294 --IFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSVSLALATALVDMYGKCSDIRN 351
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
A +F + + ++WTA + + Q FN F +M ++ T S+L C
Sbjct: 352 ARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLC-A 410
Query: 231 VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVF-ELIVDKKNIASW 289
V + G+ +H+ I K +E D + LVDMY KC + A R+F E I ++I W
Sbjct: 411 VAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAI--SRDICMW 468
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
NA++ G+ +G EA M+ G++ + L ACS
Sbjct: 469 NAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACS 511
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 81/290 (27%), Positives = 134/290 (46%), Gaps = 11/290 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+LM+ C ++ AR +FD+M RD SW+ MI ++ + L EM
Sbjct: 133 NALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALELIREM------ 186
Query: 110 HMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRN--ISLTGSLINFYGKFR 166
+ + V P+ + +V ++ T NM +GK +H + + ++ + + T +L++ Y K
Sbjct: 187 NFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCG 246
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
L A +F+ L + V WTA I R + F M E I N T S++
Sbjct: 247 HLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITMLSLIV 306
Query: 227 ACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
C G G+Q+HA I++ G + LVDMYGKC +R+A +F+ +++
Sbjct: 307 EC-GFTGALQLGKQLHAYILRNGFSVSLALATALVDMYGKCSDIRNARALFD-STQNRDV 364
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
W AML Y + +A M+ SG++ + I L C+ A
Sbjct: 365 MIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGA 414
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/260 (26%), Positives = 117/260 (45%), Gaps = 16/260 (6%)
Query: 90 VADYQECITLFAE----MMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFK 145
DY E T F + + + G ++ VLKAC +LGK++HG + K
Sbjct: 63 TTDYDEEKTHFPDGKQSLKANRNGDDDDDVDNFMAPSVLKACGQVSWTQLGKEIHGFVLK 122
Query: 146 LGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFND 205
G R++ + +L+ YG+ C+E A VF ++ + V W+ I + R F
Sbjct: 123 KGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALEL 182
Query: 206 FKEMGRERIKKNSYTFSSVLKACGGVDDDGN--CGRQMHANIVKIGLESDEYV----QCG 259
+EM +++ + S++ D N G+ MHA +++ ++E++
Sbjct: 183 IREMNFMQVRPSEVAMVSMVNLFA---DTANMRMGKAMHAYVIRN--SNNEHMGVPTTTA 237
Query: 260 LVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQI 319
L+DMY KC L A ++F + +K + SW AM+ G IR+ E TK M+ I
Sbjct: 238 LLDMYAKCGHLGLARQLFNGLT-QKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFP 296
Query: 320 QESLINDLRIACSSISASKI 339
E + L + C A ++
Sbjct: 297 NEITMLSLIVECGFTGALQL 316
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/287 (26%), Positives = 120/287 (41%), Gaps = 20/287 (6%)
Query: 16 LIKECTFQKDSAGAFELLNHIRK---RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
LI EC F GA +L + R +L L+ M+ C + AR LFD
Sbjct: 304 LIVECGF----TGALQLGKQLHAYILRNGFSVSLALATALVDMYGKCSDIRNARALFDST 359
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI-IVCVLKACVCTM 131
RD W M+ Y + LF +M R G V P + IV +L C
Sbjct: 360 QNRDVMIWTAMLSAYAQANCIDQAFNLFDQM--RTSG----VRPTKVTIVSLLSLCAVAG 413
Query: 132 NMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIV 191
++LGK VH + K + L +L++ Y K + A +F + + +W A I
Sbjct: 414 ALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIIT 473
Query: 192 NNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--GGVDDDGNCGRQMHANIVKIG 249
G+ + + F EM R+ +K N TF +L AC G+ +G + + G
Sbjct: 474 GFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGK--KLFEKMVHTFG 531
Query: 250 LESD-EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
L E+ C +VD+ G+ LL +A + + + K N W A++
Sbjct: 532 LVPQIEHYGC-MVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAA 577
>gi|226530385|ref|NP_001145846.1| CRR4 [Zea mays]
gi|219884683|gb|ACL52716.1| unknown [Zea mays]
gi|414878658|tpg|DAA55789.1| TPA: CRR4 [Zea mays]
Length = 601
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/284 (28%), Positives = 129/284 (45%), Gaps = 8/284 (2%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
+N L+ + G ++ AR+LFD MP + SW MI Y ++QE +TLF +M++
Sbjct: 147 MNCLITGYSRSGDVEEARRLFDSMPRKTSASWNSMIACYAHGGEFQEALTLFDQMLREGA 206
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
A I V C T ++E G++ + + +N+ + +L+ Y K R +
Sbjct: 207 SPN-----AITITTVFSICAKTGDLETGRRAKAWVSE-EDLQNVIVHTALMEMYVKCRAI 260
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
++A F ++ R + V W+ I G H+ F+ M K N T VL AC
Sbjct: 261 DEARREFDRMPRRDVVAWSTMIAGYSHNGRPHESLELFERMKATNCKPNEVTLVGVLSAC 320
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
+ D G Q+ + I L Y+ L+DMY KC + A VF + ++K + +
Sbjct: 321 AQLGSD-ELGEQIGSYIESQTLPLTSYLGSALIDMYTKCGHVARARDVFHRM-EQKVVIA 378
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
WN+M+ G NG +A M G+Q E L AC+
Sbjct: 379 WNSMIRGLALNGFAEDAIALYGEMVGDGVQPNEITFLALLTACT 422
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 73/312 (23%), Positives = 128/312 (41%), Gaps = 47/312 (15%)
Query: 64 TARQLFDEMPLRDFNSWAVMIVGYVDVAD----YQECITLFAEMMKRKKGHMLLVFPAWI 119
AR LFD +P A + +V V +QE I + + +R P+
Sbjct: 30 AARHLFDAVP----RPTAALCCAFVSVLSKLSLHQELIEAVSSLHRRGGA-----IPSGC 80
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK--------------- 164
I VLK+C + G Q H G ++ + +L++FY K
Sbjct: 81 IPLVLKSCALSAASCQGTQTHCHALVRGMLGDVFVQTALVDFYAKNGNMDSAVMAFEEMP 140
Query: 165 ------FRCL----------EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKE 208
CL E+A +F + R + W + I G F + F +
Sbjct: 141 IKDPIPMNCLITGYSRSGDVEEARRLFDSMPRKTSASWNSMIACYAHGGEFQEALTLFDQ 200
Query: 209 MGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCR 268
M RE N+ T ++V C D GR+ A + + L+ + V L++MY KCR
Sbjct: 201 MLREGASPNAITITTVFSICAKTGD-LETGRRAKAWVSEEDLQ-NVIVHTALMEMYVKCR 258
Query: 269 LLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLR 328
+ +A R F+ + ++++ +W+ M+ GY NG E+ + MKA+ + E + +
Sbjct: 259 AIDEARREFDRM-PRRDVVAWSTMIAGYSHNGRPHESLELFERMKATNCKPNEVTLVGVL 317
Query: 329 IACSSISASKIN 340
AC+ + + ++
Sbjct: 318 SACAQLGSDELG 329
>gi|302791495|ref|XP_002977514.1| hypothetical protein SELMODRAFT_107304 [Selaginella moellendorffii]
gi|300154884|gb|EFJ21518.1| hypothetical protein SELMODRAFT_107304 [Selaginella moellendorffii]
Length = 673
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/270 (30%), Positives = 126/270 (46%), Gaps = 8/270 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ C +LD AR+ F+ + +D SW MI + + E + + M+ ++
Sbjct: 153 NALVNMYSKCRRLDLAREAFERIDSKDVVSWNSMIAAHSQLGGSDEALETYRRMIGEER- 211
Query: 110 HMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+ P I +V L A + + K + +LG ++ + +L++ GK CL
Sbjct: 212 ----LEPTKITLVHALGAALSLRSAGDTKLLQEDAIRLGLEGDLLVGSALVSALGKCGCL 267
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+ A VF +++R N V W+ I G F M + I+ N T SVL+AC
Sbjct: 268 DQARAVFDRMERRNVVSWSGLIAALAEHGRGRDAIELFHRMDLDGIQPNEVTLLSVLEAC 327
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
GR+ HA + G E++ V LV+MYGKC L A VF+ + +N+ S
Sbjct: 328 ASTGAIAE-GRRTHARVSGCGFEAETNVANALVNMYGKCGHLGSARTVFDAMT-WRNVVS 385
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
W AML GY +G EA + M GIQ
Sbjct: 386 WTAMLAGYAHHGHTEEARRVFKAMALEGIQ 415
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 81/272 (29%), Positives = 127/272 (46%), Gaps = 13/272 (4%)
Query: 26 SAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIV 85
SAG +LL R+ ++ LL + L+ CG LD AR +FD M R+ SW+ +I
Sbjct: 231 SAGDTKLLQEDAIRLGLEGDLLVGSALVSALGKCGCLDQARAVFDRMERRNVVSWSGLIA 290
Query: 86 GYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLF 144
+ ++ I LF M + + P + ++ VL+AC T + G++ H +
Sbjct: 291 ALAEHGRGRDAIELFHRM------DLDGIQPNEVTLLSVLEACASTGAIAEGRRTHARVS 344
Query: 145 KLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFN 204
G ++ +L+N YGK L A VF + N V WTA + GH +
Sbjct: 345 GCGFEAETNVANALVNMYGKCGHLGSARTVFDAMTWRNVVSWTAMLAGYAHHGHTEEARR 404
Query: 205 DFKEMGRERIKKNSYTFSSVLKAC--GGVDDDGNCGRQMHANIVKIGL-ESDEYVQCGLV 261
FK M E I+ N TF SVL C GV DG Q H + G+ E+ C ++
Sbjct: 405 VFKAMALEGIQPNVITFVSVLFNCSHAGVVSDGL--EQFHIMVGDFGIVPVTEHYGC-VI 461
Query: 262 DMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
D+ G+ L +AE + + + + A+WN++L
Sbjct: 462 DLLGRAGWLEEAEELLRTMPVEPDKAAWNSLL 493
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/280 (25%), Positives = 128/280 (45%), Gaps = 10/280 (3%)
Query: 59 CGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAW 118
CG L+ AR+ FD +P ++ SW MI + + + ++ M V P+
Sbjct: 61 CGDLEGAREAFDRIPAKNVVSWNSMIAALNEHGHFARALEIYRRMEPEG------VKPSD 114
Query: 119 I-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQ 177
I + L +C ++E GK +H + G + + +L+N Y K R L+ A F +
Sbjct: 115 ISYIHALCSCSGLRDLEQGKSIHDRVATDGFDTQVFVGNALVNMYSKCRRLDLAREAFER 174
Query: 178 LKRHNTVVWTAKIVNNCREGHFHQVFNDFKEM-GRERIKKNSYTFSSVLKACGGVDDDGN 236
+ + V W + I + + G + ++ M G ER++ T L A + G+
Sbjct: 175 IDSKDVVSWNSMIAAHSQLGGSDEALETYRRMIGEERLEPTKITLVHALGAALSLRSAGD 234
Query: 237 CGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGY 296
+ + + +++GLE D V LV GKC L A VF+ + +++N+ SW+ ++
Sbjct: 235 T-KLLQEDAIRLGLEGDLLVGSALVSALGKCGCLDQARAVFDRM-ERRNVVSWSGLIAAL 292
Query: 297 IRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+G +A + + M GIQ E + + AC+S A
Sbjct: 293 AEHGRGRDAIELFHRMDLDGIQPNEVTLLSVLEACASTGA 332
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 92/192 (47%), Gaps = 5/192 (2%)
Query: 117 AWIIVCVLKACVCTMNMELGKQVHGLLFKL---GSSRNISLTGSLINFYGKFRCLEDADF 173
A I +L+AC + ++ + F++ G ++++ +LI+ + LE A
Sbjct: 10 AVIFTRLLEACARSPEKSDRSRLAEIQFRVVATGFDADVTVATALISALARCGDLEGARE 69
Query: 174 VFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDD 233
F ++ N V W + I GHF + ++ M E +K + ++ L +C G+ D
Sbjct: 70 AFDRIPAKNVVSWNSMIAALNEHGHFARALEIYRRMEPEGVKPSDISYIHALCSCSGLRD 129
Query: 234 DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
G+ +H + G ++ +V LV+MY KCR L A FE I D K++ SWN+M+
Sbjct: 130 LEQ-GKSIHDRVATDGFDTQVFVGNALVNMYSKCRRLDLAREAFERI-DSKDVVSWNSMI 187
Query: 294 VGYIRNGLYVEA 305
+ + G EA
Sbjct: 188 AAHSQLGGSDEA 199
>gi|449435936|ref|XP_004135750.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21300-like [Cucumis sativus]
Length = 762
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/264 (29%), Positives = 129/264 (48%), Gaps = 7/264 (2%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+V G L A+ LF + L ++W MI G+ + + + + +M+
Sbjct: 1 MYVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYT 60
Query: 115 FPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFV 174
FP V+KAC ++++GK VH + +G ++ + SLI Y + L DA ++
Sbjct: 61 FPY-----VVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYL 115
Query: 175 FSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDD 234
F + + ++V+W + + G F EM IK NS TF+ VL C +
Sbjct: 116 FDNIPQKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCAS-EAM 174
Query: 235 GNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLV 294
+ G Q+H V GLE D V L+ MY KC+ L+ A ++F+ + ++ SWN ++
Sbjct: 175 LDLGTQLHGIAVSCGLELDSPVANTLLAMYSKCQCLQAARKLFD-TSPQSDLVSWNGIIS 233
Query: 295 GYIRNGLYVEATKFLYLMKASGIQ 318
GY++NGL EA M ++GI+
Sbjct: 234 GYVQNGLMGEAEHLFRGMISAGIK 257
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 89/288 (30%), Positives = 134/288 (46%), Gaps = 9/288 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N LL M+ C L AR+LFD P D SW +I GYV E LF M+
Sbjct: 198 NTLLAMYSKCQCLQAARKLFDTSPQSDLVSWNGIISGYVQNGLMGEAEHLFRGMISAG-- 255
Query: 110 HMLLVFPAWIIVCVLKACVCTM-NMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+ P I CV + +++ K++HG + + ++ L +LI+ Y K R +
Sbjct: 256 ----IKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSALIDIYFKCRDV 311
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
E A + Q +TVV T I G + F+ + +ER+K S TFSS+ A
Sbjct: 312 EMAQKILCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPAF 371
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
G+ N G+++H +I+K L+ +V ++DMY KC L A RVF I +K I
Sbjct: 372 AGLAAL-NLGKELHGSIIKTKLDEKCHVGSAILDMYAKCGRLDLACRVFNRITEKDAIC- 429
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
WN+M+ +NG EA M G + I+ AC+++ A
Sbjct: 430 WNSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSACANLPA 477
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 79/306 (25%), Positives = 141/306 (46%), Gaps = 22/306 (7%)
Query: 8 ITTDMYT--CLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTA 65
++ D YT ++K C K S ++++ + +K + + L+ ++ G L A
Sbjct: 54 VSPDKYTFPYVVKACCGLK-SVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDA 112
Query: 66 RQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLK 125
+ LFD +P +D W VM+ GYV D I +F EM + + F CVL
Sbjct: 113 QYLFDNIPQKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTF-----ACVLS 167
Query: 126 ACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVV 185
C ++LG Q+HG+ G + + +L+ Y K +CL+ A +F + + V
Sbjct: 168 VCASEAMLDLGTQLHGIAVSCGLELDSPVANTLLAMYSKCQCLQAARKLFDTSPQSDLVS 227
Query: 186 WTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANI 245
W I + G + + F+ M IK +S TF+S L + +C +++H I
Sbjct: 228 WNGIISGYVQNGLMGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHC-KEIHGYI 286
Query: 246 VKIGLESDEYVQCGLVDMYGKCRLLRDAERV------FELIVDKKNIASWNAMLVGYIRN 299
++ + D +++ L+D+Y KCR + A+++ F+ +V M+ GY+ N
Sbjct: 287 IRHAVVLDVFLKSALIDIYFKCRDVEMAQKILCQSSSFDTVV-------CTTMISGYVLN 339
Query: 300 GLYVEA 305
G EA
Sbjct: 340 GKNKEA 345
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 72/277 (25%), Positives = 130/277 (46%), Gaps = 16/277 (5%)
Query: 47 LFLNRLLL-MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLF----A 101
+FL L+ ++ C ++ A+++ + D MI GYV +E + F
Sbjct: 295 VFLKSALIDIYFKCRDVEMAQKILCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQ 354
Query: 102 EMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINF 161
E MK +FPA+ + L LGK++HG + K + ++++
Sbjct: 355 ERMKPTSVTFSSIFPAFAGLAALN---------LGKELHGSIIKTKLDEKCHVGSAILDM 405
Query: 162 YGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTF 221
Y K L+ A VF+++ + + W + I + + G + N F++MG E + + +
Sbjct: 406 YAKCGRLDLACRVFNRITEKDAICWNSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSI 465
Query: 222 SSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIV 281
S L AC + + G+++H ++K L SD Y + L+DMY KC L + RVF+ +
Sbjct: 466 SGALSACANLPAL-HYGKEIHGLMIKGPLRSDLYAESSLIDMYAKCGNLNFSRRVFDRM- 523
Query: 282 DKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
++N SWN+++ Y +G E + M +GIQ
Sbjct: 524 QERNEVSWNSIISAYGNHGDLKECLALFHEMLRNGIQ 560
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 63/243 (25%), Positives = 101/243 (41%), Gaps = 7/243 (2%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
+L M+ CG+LD A ++F+ + +D W MI E I LF R+ G
Sbjct: 402 ILDMYAKCGRLDLACRVFNRITEKDAICWNSMITSCSQNGRPGEAINLF-----RQMGME 456
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+ I L AC + GK++HGL+ K ++ SLI+ Y K L +
Sbjct: 457 GTRYDCVSISGALSACANLPALHYGKEIHGLMIKGPLRSDLYAESSLIDMYAKCGNLNFS 516
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
VF +++ N V W + I G + F EM R I+ + TF ++ ACG
Sbjct: 517 RRVFDRMQERNEVSWNSIISAYGNHGDLKECLALFHEMLRNGIQPDHVTFLGIISACGHA 576
Query: 232 DDDGNCGRQMHANIVKIGLESD-EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWN 290
R H + G+ + E+ C + DM+G+ L +A + + W
Sbjct: 577 GQVDEGIRYYHLMTEEYGIPARMEHYAC-VADMFGRAGRLDEAFETINSMPFPPDAGVWG 635
Query: 291 AML 293
+L
Sbjct: 636 TLL 638
>gi|225423549|ref|XP_002274857.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g69350, mitochondrial [Vitis vinifera]
Length = 875
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/290 (27%), Positives = 146/290 (50%), Gaps = 8/290 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+L+ + G ++++++FD P D W V+I YV ++E ++L+ EM+ + +
Sbjct: 37 TKLIESYAQIGIFESSKRVFDTFPKPDSFMWGVLIKCYVWGGFFEEAVSLYHEMVYQDQT 96
Query: 110 HML-LVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+ VFP+ VLKAC ++ +G +VHG + K G + + SL+ YG+ CL
Sbjct: 97 QISNFVFPS-----VLKACSGFGDLSVGGKVHGRVIKCGFESDAVVETSLLCMYGEMSCL 151
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+DA F + + V W++ ++N + G + + F +M E ++ +S T SV +AC
Sbjct: 152 DDACKAFDTMPIRDVVAWSSIVLNFVQNGQASEGLDMFSQMISEAVEPDSVTMLSVTEAC 211
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
+ GR +H +V+ +ES+ + L+ MYGK L AER+FE V + A
Sbjct: 212 SELGSL-RLGRSVHGYVVRREIESNASLNNSLIVMYGKLGDLYSAERLFE-NVPCRMTAP 269
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASK 338
W M+ Y ++G + EA M+ ++ + + + AC+ + K
Sbjct: 270 WTPMISCYNQSGCFQEALNVFAKMQEFKMEPNQVTMVGVLCACARLGRVK 319
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/293 (29%), Positives = 142/293 (48%), Gaps = 16/293 (5%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL M+ LD A + FD MP+RD +W+ +++ +V E + +F++M+
Sbjct: 141 LLCMYGEMSCLDDACKAFDTMPIRDVVAWSSIVLNFVQNGQASEGLDMFSQMISEA---- 196
Query: 112 LLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
V P + ++ V +AC ++ LG+ VHG + + N SL SLI YGK L
Sbjct: 197 --VEPDSVTMLSVTEACSELGSLRLGRSVHGYVVRREIESNASLNNSLIVMYGKLGDLYS 254
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC-- 228
A+ +F + T WT I + G F + N F +M +++ N T VL AC
Sbjct: 255 AERLFENVPCRMTAPWTPMISCYNQSGCFQEALNVFAKMQEFKMEPNQVTMVGVLCACAR 314
Query: 229 -GGVDDDGNCGRQMHANIVKIGLESD-EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
G V + GR +H +++ ++ + +++ L+++Y LRD +VFE I +K I
Sbjct: 315 LGRVKE----GRSVHGFVIRRAMDPELDFLGPALMELYADTGNLRDCHKVFETI-KEKTI 369
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKI 339
SWN ++ + RNG EA M+ G+ + AC +IS S++
Sbjct: 370 LSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPDSYSLASSLSACGTISFSQL 422
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 85/298 (28%), Positives = 143/298 (47%), Gaps = 11/298 (3%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R I+ N L++M+ G L +A +LF+ +P R W MI Y +QE +
Sbjct: 229 RREIESNASLNNSLIVMYGKLGDLYSAERLFENVPCRMTAPWTPMISCYNQSGCFQEALN 288
Query: 99 LFAEMMKRKKGHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTG- 156
+FA+M + K + P + +V VL AC ++ G+ VHG + + + G
Sbjct: 289 VFAKMQEFK------MEPNQVTMVGVLCACARLGRVKEGRSVHGFVIRRAMDPELDFLGP 342
Query: 157 SLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKK 216
+L+ Y L D VF +K + W I R G + F +M + +
Sbjct: 343 ALMELYADTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMP 402
Query: 217 NSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERV 276
+SY+ +S L ACG + G Q+H I+K G +++VQ L+DMY KC + A ++
Sbjct: 403 DSYSLASSLSACGTISFS-QLGAQIHGYIIKTG-NFNDFVQNALIDMYAKCGFVHSANKM 460
Query: 277 FELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
FE I +K++ +WN+M+ G+ +NG VEA M + +++ + + ACS +
Sbjct: 461 FEKI-KEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQACSHL 517
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 78/299 (26%), Positives = 138/299 (46%), Gaps = 9/299 (3%)
Query: 39 RVNIKPTLLFLNRLLL-MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECI 97
R + P L FL L+ ++ G L ++F+ + + SW +I + +E +
Sbjct: 330 RRAMDPELDFLGPALMELYADTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEAL 389
Query: 98 TLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGS 157
LF +M + L+ ++ + L AC +LG Q+HG + K G+ + + +
Sbjct: 390 LLFVQMQTQG-----LMPDSYSLASSLSACGTISFSQLGAQIHGYIIKTGNFNDF-VQNA 443
Query: 158 LINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKN 217
LI+ Y K + A+ +F ++K + V W + I + G+ + F +M +K +
Sbjct: 444 LIDMYAKCGFVHSANKMFEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMD 503
Query: 218 SYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVF 277
TF SV++AC + G+ +H ++ GL D Y+ L DMY KC L+ A VF
Sbjct: 504 KLTFLSVIQACSHLGYLEK-GKWVHHKLIMYGLRKDSYLDTALTDMYSKCGELQMAHGVF 562
Query: 278 ELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+ + +++I SW+ M+ GY +G M SGI+ + + ACS A
Sbjct: 563 DRM-SERSIVSWSVMIAGYGMHGQINATISLFNQMLGSGIKPNDITFMHILSACSHAGA 620
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 102/203 (50%), Gaps = 3/203 (1%)
Query: 138 QVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREG 197
Q+H LF G R+ + LI Y + E + VF + ++ +W I G
Sbjct: 19 QLHAHLFITGLHRHPPASTKLIESYAQIGIFESSKRVFDTFPKPDSFMWGVLIKCYVWGG 78
Query: 198 HFHQVFNDFKEM-GRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYV 256
F + + + EM +++ + +++ F SVLKAC G D + G ++H ++K G ESD V
Sbjct: 79 FFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDL-SVGGKVHGRVIKCGFESDAVV 137
Query: 257 QCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASG 316
+ L+ MYG+ L DA + F+ + +++ +W+++++ +++NG E M +
Sbjct: 138 ETSLLCMYGEMSCLDDACKAFD-TMPIRDVVAWSSIVLNFVQNGQASEGLDMFSQMISEA 196
Query: 317 IQIQESLINDLRIACSSISASKI 339
++ + + ACS + + ++
Sbjct: 197 VEPDSVTMLSVTEACSELGSLRL 219
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 110/249 (44%), Gaps = 12/249 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ CG + +A ++F+++ + +W MI G+ E ITLF +M
Sbjct: 442 NALIDMYAKCGFVHSANKMFEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVK 501
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
L F + V++AC +E GK VH L G ++ L +L + Y K L+
Sbjct: 502 MDKLTF-----LSVIQACSHLGYLEKGKWVHHKLIMYGLRKDSYLDTALTDMYSKCGELQ 556
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC- 228
A VF ++ + V W+ I G + + F +M IK N TF +L AC
Sbjct: 557 MAHGVFDRMSERSIVSWSVMIAGYGMHGQINATISLFNQMLGSGIKPNDITFMHILSACS 616
Query: 229 --GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
G V++ G+ ++ + G+E +VD+ + L A ++ + N
Sbjct: 617 HAGAVEE----GKLYFNSMSEFGVEPKHDHFACMVDLLSRAGDLNGAYQIITSLPFPANS 672
Query: 287 ASWNAMLVG 295
+ W A+L G
Sbjct: 673 SIWGALLNG 681
>gi|449503129|ref|XP_004161848.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Cucumis sativus]
Length = 769
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 87/328 (26%), Positives = 155/328 (47%), Gaps = 12/328 (3%)
Query: 11 DMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKP-TLLFLNRLLLMHVSCGQLDTARQLF 69
D Y ++ C DS + H + P +L F N +L +V CG+L QLF
Sbjct: 216 DFYVSFLQRCVLTSDSRHGSAI--HAKFLKGFLPFSLFFHNHVLNFYVKCGRLSYGLQLF 273
Query: 70 DEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCVLKACV 128
DEMP R+ SW+ +I G+V E ++LF M + P + +V L AC
Sbjct: 274 DEMPERNVVSWSAIIAGFVQHGRPNEALSLFGRMHCDGT-----IMPNEFTLVSALHACS 328
Query: 129 CTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTA 188
T + Q++ + +LG N+ L + + + L +A VF +TV W A
Sbjct: 329 LTQRLICSYQIYAFIVRLGYGSNVFLMNAFLTALIRHEKLLEALEVFESCLSKDTVSWNA 388
Query: 189 KIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKI 248
+ + +F ++ ++ M E +K +++TF+S+L + + G Q+H +VK
Sbjct: 389 MMAGYLQLAYF-ELPKFWRRMNLESVKPDNFTFASILTGLAAL-SEFRLGLQVHGQLVKS 446
Query: 249 GLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKF 308
G +D V L DMY K + L D + F+ + ++ SW M G ++ G ++A K
Sbjct: 447 GYGNDICVGNSLCDMYVKNQKLLDGFKAFDEM-SSSDVCSWTQMAAGCLQCGEPMKALKV 505
Query: 309 LYLMKASGIQIQESLINDLRIACSSISA 336
+Y MK G+++ + + +C+++++
Sbjct: 506 IYEMKNVGVRLNKFTLATALNSCANLAS 533
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/276 (25%), Positives = 120/276 (43%), Gaps = 10/276 (3%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R+ + +N L + +L A ++F+ +D SW M+ GY+ +A Y E
Sbjct: 345 RLGYGSNVFLMNAFLTALIRHEKLLEALEVFESCLSKDTVSWNAMMAGYLQLA-YFELPK 403
Query: 99 LFAEMMKRKKGHMLLVFPA-WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGS 157
+ M ++ V P + +L LG QVHG L K G +I + S
Sbjct: 404 FWRRM------NLESVKPDNFTFASILTGLAALSEFRLGLQVHGQLVKSGYGNDICVGNS 457
Query: 158 LINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKN 217
L + Y K + L D F ++ + WT + G + EM ++ N
Sbjct: 458 LCDMYVKNQKLLDGFKAFDEMSSSDVCSWTQMAAGCLQCGEPMKALKVIYEMKNVGVRLN 517
Query: 218 SYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVF 277
+T ++ L +C + G++ H +K+G + D V L+DMY KC + A VF
Sbjct: 518 KFTLATALNSCANLASIEE-GKKFHGLRIKLGTDVDVCVDNALLDMYAKCGCMTSANVVF 576
Query: 278 ELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMK 313
+ D++++ SW M++G+ NG EA + M+
Sbjct: 577 RSM-DERSVVSWTTMIMGFAHNGQTKEALQIFDEMR 611
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 113/254 (44%), Gaps = 11/254 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L M+V +L + FDEM D SW M G + + + + + EM + G
Sbjct: 456 NSLCDMYVKNQKLLDGFKAFDEMSSSDVCSWTQMAAGCLQCGEPMKALKVIYEM--KNVG 513
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
L F + L +C ++E GK+ HGL KLG+ ++ + +L++ Y K C+
Sbjct: 514 VRLNKF---TLATALNSCANLASIEEGKKFHGLRIKLGTDVDVCVDNALLDMYAKCGCMT 570
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC- 228
A+ VF + + V WT I+ G + F EM + + N TF VL AC
Sbjct: 571 SANVVFRSMDERSVVSWTTMIMGFAHNGQTKEALQIFDEMRKGEAEPNHITFICVLNACS 630
Query: 229 --GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
G +D+ M A+ I D YV C +V++ G+ +++AE + + +
Sbjct: 631 QGGFIDEAWKYFSSMSAD-HGIAPSEDHYV-C-MVNLLGRAGCIKEAEDLILQMPFQPGS 687
Query: 287 ASWNAMLVGYIRNG 300
W +L + +G
Sbjct: 688 LVWQTLLGACLVHG 701
>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like, partial [Vitis vinifera]
Length = 629
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 85/277 (30%), Positives = 141/277 (50%), Gaps = 11/277 (3%)
Query: 64 TARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCV 123
A ++FD+MP R+ +W +MI + + ++ I LF +M G++ F V
Sbjct: 3 PAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDM--ELSGYVPDRF---TYSSV 57
Query: 124 LKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC---LEDADFVFSQLKR 180
L AC + LGKQ+H + +LG + ++ + SL++ Y K ++D+ VF Q+
Sbjct: 58 LSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPE 117
Query: 181 HNTVVWTAKIVNNCREGHF-HQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGR 239
HN + WTA I + G + F +M I+ N ++FSSVLKACG + D G
Sbjct: 118 HNVMSWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDP-YTGE 176
Query: 240 QMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRN 299
Q+++ VK+G+ S V L+ MY + + DA + F+++ + KN+ S+NA++ GY +N
Sbjct: 177 QVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFE-KNLVSYNAIVDGYAKN 235
Query: 300 GLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
EA + +GI I L +SI A
Sbjct: 236 LKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGA 272
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 80/288 (27%), Positives = 140/288 (48%), Gaps = 13/288 (4%)
Query: 52 LLLMHVSC---GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVAD-YQECITLFAEMMKRK 107
L+ M+ C G +D +R++F++MP + SW +I Y + +E I LF +M+
Sbjct: 92 LVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMIS-- 149
Query: 108 KGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166
GH + P + VLKAC + G+QV+ KLG + + SLI+ Y +
Sbjct: 150 -GH---IRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSG 205
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
+EDA F L N V + A + + + F F E+ I +++TF+S+L
Sbjct: 206 RMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLS 265
Query: 227 ACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
+ G G Q+H ++K G +S++ + L+ MY +C + A +VF + D +N+
Sbjct: 266 GAASIGAMGK-GEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMED-RNV 323
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
SW +M+ G+ ++G A + + M +G + E + ACS +
Sbjct: 324 ISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHV 371
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 102/225 (45%), Gaps = 7/225 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ G+++ AR+ FD + ++ S+ ++ GY +E LF E+ G
Sbjct: 195 NSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIG 254
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
A+ +L M G+Q+HG L K G N + +LI+ Y + +E
Sbjct: 255 -----ISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIE 309
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A VF++++ N + WT+ I + G + F +M K N T+ +VL AC
Sbjct: 310 AAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACS 369
Query: 230 GVDDDGNCGRQMHANIVKIGLESD-EYVQCGLVDMYGKCRLLRDA 273
V + ++ + G+ E+ C +VD+ G+ LL +A
Sbjct: 370 HVGMISEGQKHFNSMYKEHGIVPRMEHYAC-MVDLLGRSGLLVEA 413
>gi|410110015|gb|AFV61087.1| pentatricopeptide repeat-containing protein 81, partial [Lippia
filifolia]
Length = 362
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 77/274 (28%), Positives = 134/274 (48%), Gaps = 10/274 (3%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMP-LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRK 107
LN + + CG ++ A+++FD RD +W M+ Y++ + +F EM+K++
Sbjct: 93 LNATITAYAECGCIEDAKRVFDSSDGYRDLVTWNSMLAAYLEHNLEEYGFNIFLEMVKQR 152
Query: 108 KGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF-- 165
L A+ + V+ AC LGK +HG K G + ++ +L++ Y K
Sbjct: 153 -----LEMDAYTLSSVISACFEDTQQSLGKSLHGFXIKKGLDQVTQISNALVSMYLKSNS 207
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
R EDA +F + + V W + + G F+ + + + + YTF+SVL
Sbjct: 208 RNXEDALKIFEHINVKDLVSWNTILTGLSQNGLSENALRLFQNIHLDHLVTDQYTFASVL 267
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
++C + + GRQ+H +VK G E +EYV L+ MY KC ++ DA FE + K+
Sbjct: 268 RSCSDLAT-LHLGRQIHVLVVKSGSEGNEYVASALIFMYSKCGIIEDARESFESSL-KET 325
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQI 319
+WN+++ Y ++G A YLM I++
Sbjct: 326 SVTWNSIIFAYAQHGQGKIALXLFYLMTERSIKL 359
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/255 (29%), Positives = 124/255 (48%), Gaps = 12/255 (4%)
Query: 59 CGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEM-MKRKKGHMLLVFPA 117
C +++ A ++F M R+ SW +I GY ++ + + CITLF M M+ + P
Sbjct: 2 CRRVEDANKVFKYMRERNAVSWNALIGGYAEMGNLERCITLFVGMEMEGVRVDDATFAP- 60
Query: 118 WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVF-S 176
+L + +L +Q+HG + K G ++ + I Y + C+EDA VF S
Sbjct: 61 -----LLTLLNDAESYDLARQLHGKIMKHGLEYENTVLNATITAYAECGCIEDAKRVFDS 115
Query: 177 QLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGN 236
+ V W + + FN F EM ++R++ ++YT SSV+ AC D +
Sbjct: 116 SDGYRDLVTWNSMLAAYLEHNLEEYGFNIFLEMVKQRLEMDAYTLSSVISACFE-DTQQS 174
Query: 237 CGRQMHANIVKIGLESDEYVQCGLVDMYGK--CRLLRDAERVFELIVDKKNIASWNAMLV 294
G+ +H +K GL+ + LV MY K R DA ++FE I + K++ SWN +L
Sbjct: 175 LGKSLHGFXIKKGLDQVTQISNALVSMYLKSNSRNXEDALKIFEHI-NVKDLVSWNTILT 233
Query: 295 GYIRNGLYVEATKFL 309
G +NGL A +
Sbjct: 234 GLSQNGLSENALRLF 248
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 69/138 (50%), Gaps = 1/138 (0%)
Query: 164 KFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSS 223
K R +EDA+ VF ++ N V W A I G+ + F M E ++ + TF+
Sbjct: 1 KCRRVEDANKVFKYMRERNAVSWNALIGGYAEMGNLERCITLFVGMEMEGVRVDDATFAP 60
Query: 224 VLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
+L + + RQ+H I+K GLE + V + Y +C + DA+RVF+
Sbjct: 61 LLTLLNDAES-YDLARQLHGKIMKHGLEYENTVLNATITAYAECGCIEDAKRVFDSSDGY 119
Query: 284 KNIASWNAMLVGYIRNGL 301
+++ +WN+ML Y+ + L
Sbjct: 120 RDLVTWNSMLAAYLEHNL 137
>gi|242037917|ref|XP_002466353.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
gi|241920207|gb|EER93351.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
Length = 862
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 77/287 (26%), Positives = 144/287 (50%), Gaps = 9/287 (3%)
Query: 47 LFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR 106
++ L+ ++ C + TAR L+D D + +I GYV ++ + +F ++++
Sbjct: 379 FLVSALVDIYFKCRDVRTARNLYDAARAIDVVIGSTVISGYVLNGMSEKALQMFRYLLEQ 438
Query: 107 KKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
+ P A + VL AC + LG+++HG + + + +L++ Y K
Sbjct: 439 ------CIKPNAVTVASVLPACASISALPLGQEIHGYVLRNAYEGKCYVESALMDMYAKC 492
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
L+ + ++FS++ + V W + I + + G + + F++M E IK N+ T SS L
Sbjct: 493 GRLDLSHYIFSKMSLKDEVTWNSMISSFSQNGEPQEALDLFRQMCMEGIKYNNVTISSAL 552
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
AC + G+++H I+K +++D + + L+DMY KC + A RVFE + DK
Sbjct: 553 SACASLPAI-YYGKEIHGVIIKGPIKADIFAESALIDMYAKCGNMELALRVFEFMPDKNE 611
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+ SWN+++ Y +GL E+ FL+ M+ G + L AC+
Sbjct: 612 V-SWNSIISAYGAHGLVKESVSFLHRMQEEGYKPDHVTFLALISACA 657
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 83/287 (28%), Positives = 137/287 (47%), Gaps = 11/287 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ G L AR FD MP RD W VM+ GY+ D + LF M R G
Sbjct: 182 LIKMYSDAGLLRDARDAFDGMPWRDCVLWNVMMDGYIKAGDVGGAVRLFRNM--RVSG-- 237
Query: 112 LLVFPAW-IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
P + + C L C ++ G Q+H L K G + +++ +L++ Y K RCL+D
Sbjct: 238 --CEPNFATLACFLSVCAAEADLLSGVQLHSLAVKCGLEQEVAVANTLLSMYAKCRCLDD 295
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
A +F L R + V W I + G + F +M R + +S T S+L A
Sbjct: 296 AWRLFELLPRDDLVTWNGMISGCVQNGLLDEALGLFCDMLRSGARPDSVTLVSLLPAL-- 353
Query: 231 VDDDG-NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
D +G G+++H I++ + D ++ LVD+Y KCR +R A +++ ++
Sbjct: 354 TDLNGLKQGKEVHGYIIRNCVHMDAFLVSALVDIYFKCRDVRTARNLYD-AARAIDVVIG 412
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+ ++ GY+ NG+ +A + + I+ + + AC+SISA
Sbjct: 413 STVISGYVLNGMSEKALQMFRYLLEQCIKPNAVTVASVLPACASISA 459
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 81/324 (25%), Positives = 147/324 (45%), Gaps = 10/324 (3%)
Query: 14 TCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMP 73
C + C + D +L + + + ++ + N LL M+ C LD A +LF+ +P
Sbjct: 246 ACFLSVCAAEADLLSGVQL-HSLAVKCGLEQEVAVANTLLSMYAKCRCLDDAWRLFELLP 304
Query: 74 LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN- 132
D +W MI G V E + LF +M++ P + + L + +N
Sbjct: 305 RDDLVTWNGMISGCVQNGLLDEALGLFCDMLRSG------ARPDSVTLVSLLPALTDLNG 358
Query: 133 MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192
++ GK+VHG + + + L +L++ Y K R + A ++ + + V+ + I
Sbjct: 359 LKQGKEVHGYIIRNCVHMDAFLVSALVDIYFKCRDVRTARNLYDAARAIDVVIGSTVISG 418
Query: 193 NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLES 252
G + F+ + + IK N+ T +SVL AC + G+++H +++ E
Sbjct: 419 YVLNGMSEKALQMFRYLLEQCIKPNAVTVASVLPACASISAL-PLGQEIHGYVLRNAYEG 477
Query: 253 DEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLM 312
YV+ L+DMY KC L + +F + K + +WN+M+ + +NG EA M
Sbjct: 478 KCYVESALMDMYAKCGRLDLSHYIFSKMSLKDEV-TWNSMISSFSQNGEPQEALDLFRQM 536
Query: 313 KASGIQIQESLINDLRIACSSISA 336
GI+ I+ AC+S+ A
Sbjct: 537 CMEGIKYNNVTISSALSACASLPA 560
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 79/297 (26%), Positives = 126/297 (42%), Gaps = 10/297 (3%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNS---WAVMIVGYVDVADYQECITLFAE 102
L RLL M+V + A +F +P S W +I G+ + + + +
Sbjct: 70 LALHTRLLGMYVLARRFRDAVAVFSALPRAAAGSSLPWNWLIRGFTAAGHHSLAVLFYVK 129
Query: 103 MMKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINF 161
M H P A + V+K+C + LG+ VH G + ++ + +LI
Sbjct: 130 MWT----HPAAPSPDAHTLPYVVKSCAALGAVSLGRLVHRTARATGLASDVYVGSALIKM 185
Query: 162 YGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTF 221
Y L DA F + + V+W + + G F+ M + N T
Sbjct: 186 YSDAGLLRDARDAFDGMPWRDCVLWNVMMDGYIKAGDVGGAVRLFRNMRVSGCEPNFATL 245
Query: 222 SSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIV 281
+ L C + D G Q+H+ VK GLE + V L+ MY KCR L DA R+FEL+
Sbjct: 246 ACFLSVCAA-EADLLSGVQLHSLAVKCGLEQEVAVANTLLSMYAKCRCLDDAWRLFELL- 303
Query: 282 DKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASK 338
+ ++ +WN M+ G ++NGL EA M SG + + L A + ++ K
Sbjct: 304 PRDDLVTWNGMISGCVQNGLLDEALGLFCDMLRSGARPDSVTLVSLLPALTDLNGLK 360
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 92/207 (44%), Gaps = 10/207 (4%)
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRN---ISLTGSLINFYGKFRCLEDADFVFS 176
++ +L+ CV ++ LG Q+H G+ N ++L L+ Y R DA VFS
Sbjct: 35 LLALLRGCVSAPHLPLGLQIHARAVVSGALSNHNHLALHTRLLGMYVLARRFRDAVAVFS 94
Query: 177 QLKRH---NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERI--KKNSYTFSSVLKACGGV 231
L R +++ W I GH + +M +++T V+K+C +
Sbjct: 95 ALPRAAAGSSLPWNWLIRGFTAAGHHSLAVLFYVKMWTHPAAPSPDAHTLPYVVKSCAAL 154
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
+ GR +H GL SD YV L+ MY LLRDA F+ + ++ WN
Sbjct: 155 GAV-SLGRLVHRTARATGLASDVYVGSALIKMYSDAGLLRDARDAFDGM-PWRDCVLWNV 212
Query: 292 MLVGYIRNGLYVEATKFLYLMKASGIQ 318
M+ GYI+ G A + M+ SG +
Sbjct: 213 MMDGYIKAGDVGGAVRLFRNMRVSGCE 239
>gi|302801606|ref|XP_002982559.1| hypothetical protein SELMODRAFT_116559 [Selaginella moellendorffii]
gi|300149658|gb|EFJ16312.1| hypothetical protein SELMODRAFT_116559 [Selaginella moellendorffii]
Length = 465
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 79/298 (26%), Positives = 134/298 (44%), Gaps = 15/298 (5%)
Query: 41 NIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLF 100
+KP L+ N L+ M+ CG+LD AR++F E+P RD +WA ++ GY D + L+
Sbjct: 129 GLKPDLIVQNALMSMYAKCGELDEARRIFFELPTRDVGAWACLMAGYAQHGDVARALELY 188
Query: 101 AEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLIN 160
M K +F I C ++ G+ V L F G + + SL+
Sbjct: 189 NRMRDEKVEANAAIFSTLIAACS--------TLKEGELVRDLAFACGFEADPIVQASLVG 240
Query: 161 FYGKFRCLEDADFVFSQLKRHN--TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
YGK +E+A +F + N W++ I R G + F M ++ N+
Sbjct: 241 MYGKHGKIEEARRIFDNIHGENKDVAAWSSIISAYARHGLTDEALRLFWRMVSRGVEPNA 300
Query: 219 YTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE 278
F SV+ C + G+ +HA + + D VQ LV MY KC L DA F+
Sbjct: 301 MIFKSVICCCAS-GEALEQGKAVHARLKESPSREDSAVQNALVGMYCKCGSLDDARAAFD 359
Query: 279 LIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+ +++ +W +++ Y++ + K L L ++ E ++ + ACSS+ +
Sbjct: 360 -VTKRRDRHTWTTLIMAYVQK---RKPEKALELYHGMDVEPDEFILASVAAACSSLGS 413
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 70/288 (24%), Positives = 127/288 (44%), Gaps = 45/288 (15%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ CG L +AR+ F+ M ++ SW +I YV +E + LFA M
Sbjct: 72 NALVTMYARCGDLVSAREFFEGMREKNSMSWNAIISAYVQGGHPREALELFARM------ 125
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
T N G ++ + +L++ Y K L+
Sbjct: 126 --------------------TGN--------------GLKPDLIVQNALMSMYAKCGELD 151
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
+A +F +L + W + + G + + M E+++ N+ FS+++ AC
Sbjct: 152 EARRIFFELPTRDVGAWACLMAGYAQHGDVARALELYNRMRDEKVEANAAIFSTLIAACS 211
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELI-VDKKNIAS 288
+ +G R + G E+D VQ LV MYGK + +A R+F+ I + K++A+
Sbjct: 212 TL-KEGELVRDL---AFACGFEADPIVQASLVGMYGKHGKIEEARRIFDNIHGENKDVAA 267
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
W++++ Y R+GL EA + + M + G++ + + C+S A
Sbjct: 268 WSSIISAYARHGLTDEALRLFWRMVSRGVEPNAMIFKSVICCCASGEA 315
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/268 (23%), Positives = 119/268 (44%), Gaps = 15/268 (5%)
Query: 12 MYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDE 71
+++ LI C+ K+ EL+ + + + L+ M+ G+++ AR++FD
Sbjct: 202 IFSTLIAACSTLKEG----ELVRDLAFACGFEADPIVQASLVGMYGKHGKIEEARRIFDN 257
Query: 72 M--PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVC 129
+ +D +W+ +I Y E + LF M+ R ++F + +I C C
Sbjct: 258 IHGENKDVAAWSSIISAYARHGLTDEALRLFWRMVSRGVEPNAMIFKS-VICC----CAS 312
Query: 130 TMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAK 189
+E GK VH L + S + ++ +L+ Y K L+DA F KR + WT
Sbjct: 313 GEALEQGKAVHARLKESPSREDSAVQNALVGMYCKCGSLDDARAAFDVTKRRDRHTWTTL 372
Query: 190 IVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIG 249
I+ ++ + + M ++ + + +SV AC + G +H+ +
Sbjct: 373 IMAYVQKRKPEKALELYHGMD---VEPDEFILASVAAACSSLGSLEQ-GMAVHSRAKSLE 428
Query: 250 LESDEYVQCGLVDMYGKCRLLRDAERVF 277
L E + L+DMY KC+ L +A ++F
Sbjct: 429 LLGCEVLGTALLDMYVKCKRLDEARKLF 456
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 56/260 (21%), Positives = 105/260 (40%), Gaps = 45/260 (17%)
Query: 83 MIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHG 141
MI GYV + E + LF + ++ + P I L AC ++E G+++H
Sbjct: 1 MIAGYVHHGRHGEALDLFLNLECEQR-----IQPNRSIFASALAACTHLGDLEHGRRIHE 55
Query: 142 LLF--KLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHF 199
+ K+ ++ + +L+ Y + L A F ++ N++ W A I + GH
Sbjct: 56 RIHHSKIAGVHDVVIGNALVTMYARCGDLVSAREFFEGMREKNSMSWNAIISAYVQGGHP 115
Query: 200 HQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCG 259
+ F M GN GL+ D VQ
Sbjct: 116 REALELFARM------------------------TGN------------GLKPDLIVQNA 139
Query: 260 LVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQI 319
L+ MY KC L +A R+F + +++ +W ++ GY ++G A + M+ ++
Sbjct: 140 LMSMYAKCGELDEARRIF-FELPTRDVGAWACLMAGYAQHGDVARALELYNRMRDEKVEA 198
Query: 320 QESLINDLRIACSSISASKI 339
++ + L ACS++ ++
Sbjct: 199 NAAIFSTLIAACSTLKEGEL 218
>gi|449510623|ref|XP_004163716.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g27610-like [Cucumis sativus]
Length = 878
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 77/261 (29%), Positives = 132/261 (50%), Gaps = 11/261 (4%)
Query: 65 ARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVL 124
A QLFDE PL+D + + ++ + +E + LF ++ G + C L
Sbjct: 57 AHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLG-----VDGLTLSCAL 111
Query: 125 KACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTV 184
K C + +G+QVH K G ++S+ SL++ Y K ED +F ++ N V
Sbjct: 112 KVCGVLFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVV 171
Query: 185 VWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDG--NCGRQMH 242
WT+ + R G +V + +M E + N +TF++VL G + D+ G Q+H
Sbjct: 172 SWTSLLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVL---GALADESIIEGGVQVH 228
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
A IVK G E +V L+ MY K ++ DAE VF+ +V + ++ +WN M+ GY G Y
Sbjct: 229 AMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSV-TWNIMIGGYAAIGFY 287
Query: 303 VEATKFLYLMKASGIQIQESL 323
+E + + M+ +G+++ ++
Sbjct: 288 LEGFQMFHRMRLAGVKLSRTV 308
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 81/294 (27%), Positives = 133/294 (45%), Gaps = 12/294 (4%)
Query: 45 TLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMM 104
T N L+ M++ + A +FD M +RD +W +MI GY + Y E +F M
Sbjct: 239 TTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRM- 297
Query: 105 KRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
R G + + LK C + KQ+H + K G + +L+ Y K
Sbjct: 298 -RLAG---VKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSK 353
Query: 165 FRCLEDADFVFSQL-KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSS 223
+++A +FS HN V WTA I + + + + F +M RE ++ N +T+S+
Sbjct: 354 CSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNKKAVDLFCQMSREGVRPNHFTYST 413
Query: 224 VLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
VL + Q+HA I+K E V L+D Y K + ++ RVF I
Sbjct: 414 VLAG-----KPSSLLSQLHAQIIKAYYEKVPSVATALLDAYVKTGNVVESARVFYSI-PA 467
Query: 284 KNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISAS 337
K+I +W+AML G + +A + + G++ E + + ACSS +A+
Sbjct: 468 KDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAAT 521
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 71/282 (25%), Positives = 131/282 (46%), Gaps = 11/282 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEM-PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGH 110
L++ + C +D A +LF + +W MI G+V + ++ + LF +M +
Sbjct: 347 LMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNKKAVDLFCQMSREG--- 403
Query: 111 MLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
V P + A + L Q+H + K + S+ +L++ Y K + +
Sbjct: 404 ---VRPNHFTYSTVLAGKPS---SLLSQLHAQIIKAYYEKVPSVATALLDAYVKTGNVVE 457
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
+ VF + + V W+A + + + F ++ +E +K N YTFSSV+ AC
Sbjct: 458 SARVFYSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSS 517
Query: 231 VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWN 290
G+Q+HA VK G + V L+ MY K + AE+VF ++++I SWN
Sbjct: 518 SAATVEHGKQIHATAVKSGKSNALCVSSALLTMYSKKGNIESAEKVFTR-QEERDIVSWN 576
Query: 291 AMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+M+ GY ++G +A + +M+ G+ + + + AC+
Sbjct: 577 SMITGYGQHGDAKKALEVFQIMQNQGLPLDDVTFIGVLTACT 618
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/268 (26%), Positives = 119/268 (44%), Gaps = 8/268 (2%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M++ + R +FDEM +++ SW ++ GY E I L +M M
Sbjct: 145 LVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARNGLNDEVIHLINQM------QM 198
Query: 112 LLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
V P + VL A +E G QVH ++ K G + +LI Y K + D
Sbjct: 199 EGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGFEFTTFVCNALICMYLKSEMVGD 258
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
A+ VF + ++V W I G + + F F M +K + F + LK C
Sbjct: 259 AEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQ 318
Query: 231 VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWN 290
+ N +Q+H +VK G E + ++ L+ Y KC + +A ++F + N+ +W
Sbjct: 319 -QRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKLFSMADAAHNVVTWT 377
Query: 291 AMLVGYIRNGLYVEATKFLYLMKASGIQ 318
AM+ G+++N +A M G++
Sbjct: 378 AMIGGFVQNNNNKKAVDLFCQMSREGVR 405
>gi|449450476|ref|XP_004142988.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g33680-like [Cucumis sativus]
Length = 692
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 103/341 (30%), Positives = 147/341 (43%), Gaps = 16/341 (4%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCG 60
M+ LP + L+ CT QKD + + R ++ N L+ ++ CG
Sbjct: 1 MNLYLLPPQHRSFVDLLLRCTRQKDLQKGKAIHAQLL-RTGSFSSVYLTNSLVNLYAKCG 59
Query: 61 QLDTARQLFDEMPLRDFNSWAVMIVGYVD--VADYQECITLFAEMMKR---KKGHMLLVF 115
+ A+ +F+ + +D SW +I GY Y + LF M GH
Sbjct: 60 SIVKAKLVFESITNKDVVSWNCLINGYSQKGTVGYSFVMELFQRMRAENTLPNGHTF--- 116
Query: 116 PAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVF 175
V A + G Q H L K + ++ + SLIN Y K C+ DA VF
Sbjct: 117 -----SGVFTAASSSPETFGGLQAHALAIKTSNFYDVFVGSSLINMYCKIGCMLDARKVF 171
Query: 176 SQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDG 235
+ NTV W I E + + F M RE + + ++SVL A V D
Sbjct: 172 DTIPERNTVSWATIISGYAMERMAFEAWELFLLMRREEGAHDKFIYTSVLSAL-TVPDLV 230
Query: 236 NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
+ G+Q+H +K GL S V LV MYGKC L DA + FEL DK +I +W+AM+ G
Sbjct: 231 HYGKQIHCLALKNGLLSIASVGNALVTMYGKCGCLDDAFKTFELSGDKDDI-TWSAMITG 289
Query: 296 YIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
Y + G EA Y M +G + E + ACS I A
Sbjct: 290 YAQAGDSHEALNLFYNMHLNGNKPSEFTFVGVINACSDIGA 330
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 84/286 (29%), Positives = 125/286 (43%), Gaps = 27/286 (9%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ CG LD A + F+ +D +W+ MI GY D E + LF M
Sbjct: 253 NALVTMYGKCGCLDDAFKTFELSGDKDDITWSAMITGYAQAGDSHEALNLFYNM------ 306
Query: 110 HMLLVFPA-WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
H+ P+ + V V+ AC +E GKQ+HG K G I K L
Sbjct: 307 HLNGNKPSEFTFVGVINACSDIGALEEGKQIHGYSLKAGYECQIYFRKGFDYLKAKCGSL 366
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
DA F LK + V+WT+ CR M ERI + T +SVL+AC
Sbjct: 367 VDARKGFDYLKEPDIVLWTS-----CR-------------MQMERIMPHELTMASVLRAC 408
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
+ G+Q+HA +K G + + L MY KC L D VF + ++I +
Sbjct: 409 SSLAALEQ-GKQIHAQTIKYGFSLEVPIGSALSTMYAKCGSLEDGNLVFRRM-PSRDIMT 466
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
WNAM+ G +NG ++A + ++ + ++ ACS +
Sbjct: 467 WNAMISGLSQNGEGLKALELFEELRHGTTKPDYVTFVNVLSACSHM 512
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/245 (29%), Positives = 115/245 (46%), Gaps = 13/245 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+ L+ M+ G + AR++FD +P R+ SWA +I GY E LF +M+R++G
Sbjct: 152 SSLINMYCKIGCMLDARKVFDTIPERNTVSWATIISGYAMERMAFEAWELFL-LMRREEG 210
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+I VL A + GKQ+H L K G S+ +L+ YGK CL+
Sbjct: 211 ----AHDKFIYTSVLSALTVPDLVHYGKQIHCLALKNGLLSIASVGNALVTMYGKCGCLD 266
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC- 228
DA F + + W+A I + G H+ N F M K + +TF V+ AC
Sbjct: 267 DAFKTFELSGDKDDITWSAMITGYAQAGDSHEALNLFYNMHLNGNKPSEFTFVGVINACS 326
Query: 229 --GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
G +++ G+Q+H +K G E Y + G + KC L DA + F+ + + +I
Sbjct: 327 DIGALEE----GKQIHGYSLKAGYECQIYFRKGFDYLKAKCGSLVDARKGFDYL-KEPDI 381
Query: 287 ASWNA 291
W +
Sbjct: 382 VLWTS 386
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 98/247 (39%), Gaps = 28/247 (11%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
+ CG L AR+ FD + D W T M+R H L
Sbjct: 359 LKAKCGSLVDARKGFDYLKEPDIVLW-----------------TSCRMQMERIMPHEL-- 399
Query: 115 FPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFV 174
+ VL+AC +E GKQ+H K G S + + +L Y K LED + V
Sbjct: 400 ----TMASVLRACSSLAALEQGKQIHAQTIKYGFSLEVPIGSALSTMYAKCGSLEDGNLV 455
Query: 175 FSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG--GVD 232
F ++ + + W A I + G + F+E+ K + TF +VL AC G+
Sbjct: 456 FRRMPSRDIMTWNAMISGLSQNGEGLKALELFEELRHGTTKPDYVTFVNVLSACSHMGLV 515
Query: 233 DDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAM 292
+ G +M + I + E+ C +VD+ + L + + E + W +
Sbjct: 516 ERGKVYFRMMLDEFGI-IPRVEHYAC-MVDILSRAGKLHETKEFIESATIDHGMCLWR-I 572
Query: 293 LVGYIRN 299
L+G RN
Sbjct: 573 LLGACRN 579
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 73/187 (39%), Gaps = 11/187 (5%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L M+ CG L+ +F MP RD +W MI G + + + LF E+
Sbjct: 439 LSTMYAKCGSLEDGNLVFRRMPSRDIMTWNAMISGLSQNGEGLKALELFEELRHGTTKPD 498
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLF-KLGSSRNISLTGSLINFYGKFRCL-E 169
+ F V VL AC +E GK ++ + G + +++ + L E
Sbjct: 499 YVTF-----VNVLSACSHMGLVERGKVYFRMMLDEFGIIPRVEHYACMVDILSRAGKLHE 553
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTF---SSVLK 226
+F+ S H +W ++ CR +++ E E + S + SS+
Sbjct: 554 TKEFIESATIDHGMCLWRI-LLGACRNYRNYELGAYAGEKLMELGSQESSAYILLSSIYT 612
Query: 227 ACGGVDD 233
A G DD
Sbjct: 613 ALGRSDD 619
>gi|296090723|emb|CBI41122.3| unnamed protein product [Vitis vinifera]
Length = 634
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 85/277 (30%), Positives = 141/277 (50%), Gaps = 11/277 (3%)
Query: 64 TARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCV 123
A ++FD+MP R+ +W +MI + + ++ I LF +M G++ F V
Sbjct: 8 PAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDM--ELSGYVPDRF---TYSSV 62
Query: 124 LKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC---LEDADFVFSQLKR 180
L AC + LGKQ+H + +LG + ++ + SL++ Y K ++D+ VF Q+
Sbjct: 63 LSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPE 122
Query: 181 HNTVVWTAKIVNNCREGHF-HQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGR 239
HN + WTA I + G + F +M I+ N ++FSSVLKACG + D G
Sbjct: 123 HNVMSWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDP-YTGE 181
Query: 240 QMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRN 299
Q+++ VK+G+ S V L+ MY + + DA + F+++ + KN+ S+NA++ GY +N
Sbjct: 182 QVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFE-KNLVSYNAIVDGYAKN 240
Query: 300 GLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
EA + +GI I L +SI A
Sbjct: 241 LKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGA 277
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 80/288 (27%), Positives = 140/288 (48%), Gaps = 13/288 (4%)
Query: 52 LLLMHVSC---GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVAD-YQECITLFAEMMKRK 107
L+ M+ C G +D +R++F++MP + SW +I Y + +E I LF +M+
Sbjct: 97 LVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMIS-- 154
Query: 108 KGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166
GH + P + VLKAC + G+QV+ KLG + + SLI+ Y +
Sbjct: 155 -GH---IRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSG 210
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
+EDA F L N V + A + + + F F E+ I +++TF+S+L
Sbjct: 211 RMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLS 270
Query: 227 ACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
+ G G Q+H ++K G +S++ + L+ MY +C + A +VF + D +N+
Sbjct: 271 GAASIGAMGK-GEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMED-RNV 328
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
SW +M+ G+ ++G A + + M +G + E + ACS +
Sbjct: 329 ISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHV 376
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 102/225 (45%), Gaps = 7/225 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ G+++ AR+ FD + ++ S+ ++ GY +E LF E+ G
Sbjct: 200 NSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIG 259
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
A+ +L M G+Q+HG L K G N + +LI+ Y + +E
Sbjct: 260 -----ISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIE 314
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A VF++++ N + WT+ I + G + F +M K N T+ +VL AC
Sbjct: 315 AAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACS 374
Query: 230 GVDDDGNCGRQMHANIVKIGLESD-EYVQCGLVDMYGKCRLLRDA 273
V + ++ + G+ E+ C +VD+ G+ LL +A
Sbjct: 375 HVGMISEGQKHFNSMYKEHGIVPRMEHYAC-MVDLLGRSGLLVEA 418
>gi|410110031|gb|AFV61095.1| pentatricopeptide repeat-containing protein 81, partial [Lippia
pusilla]
Length = 372
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 76/274 (27%), Positives = 133/274 (48%), Gaps = 10/274 (3%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDE-MPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRK 107
LN + + CG ++ A+++FD RD +W M+ Y++ + +F EM+K++
Sbjct: 94 LNATITAYAECGCIEDAKRVFDSSXGYRDLVTWNSMLAAYLEXNLEEYGFNIFLEMVKQR 153
Query: 108 KGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF-- 165
L A+ + V+ AC LGK +HG + K G ++ +L++ Y K
Sbjct: 154 -----LEMDAYTLSSVISACFEDTQQSLGKSLHGFVIKKGLDHVTQISNALVSMYLKSNS 208
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
R EDA +F + V W + + G F+ + + + + YTF++VL
Sbjct: 209 RNXEDALKIFZHXNXKDLVSWNTILTGXSQNGLSENALRLFQXIHLDHLXTDQYTFAAVL 268
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
++C + + GRQ+H +VK G E +EYV L+ MY KC ++ DA FE + K+
Sbjct: 269 RSCSDLAT-LHLGRQIHVLVVKSGXEGNEYVASALIFMYSKCGIIEDAWESFESSL-KET 326
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQI 319
+WN+++ Y ++G A YLM I++
Sbjct: 327 SVTWNSIIFAYAQHGQGKIAJDLFYLMTERRIKL 360
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 75/280 (26%), Positives = 131/280 (46%), Gaps = 10/280 (3%)
Query: 59 CGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAW 118
C +++ A ++F M R+ SW +I GY ++ D + CI LF M + + V A
Sbjct: 3 CRRVEDANKVFKYMRERNAVSWNALIGGYAEMGDLEXCIXLFVGM----EXEGVRVDDA- 57
Query: 119 IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVF-SQ 177
+L + +L +Q+HG + G ++ + I Y + C+EDA VF S
Sbjct: 58 TFAPLLTLLNDAESYDLTRQLHGKIMXRGLEYENTVLNATITAYAECGCIEDAKRVFDSS 117
Query: 178 LKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC 237
+ V W + + FN F EM ++R++ ++YT SSV+ AC D +
Sbjct: 118 XGYRDLVTWNSMLAAYLEXNLEEYGFNIFLEMVKQRLEMDAYTLSSVISACFE-DTQQSL 176
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGK--CRLLRDAERVFELIVDKKNIASWNAMLVG 295
G+ +H ++K GL+ + LV MY K R DA ++FZ + K++ SWN +L G
Sbjct: 177 GKSLHGFVIKKGLDHVTQISNALVSMYLKSNSRNXEDALKIFZH-XNXKDLVSWNTILTG 235
Query: 296 YIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
+NGL A + + + + + +CS ++
Sbjct: 236 XSQNGLSENALRLFQXIHLDHLXTDQYTFAAVLRSCSDLA 275
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 65/139 (46%), Gaps = 1/139 (0%)
Query: 163 GKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFS 222
K R +EDA+ VF ++ N V W A I G F M E ++ + TF+
Sbjct: 1 AKCRRVEDANKVFKYMRERNAVSWNALIGGYAEMGDLEXCIXLFVGMEXEGVRVDDATFA 60
Query: 223 SVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282
+L + + RQ+H I+ GLE + V + Y +C + DA+RVF+
Sbjct: 61 PLLTLLNDAES-YDLTRQLHGKIMXRGLEYENTVLNATITAYAECGCIEDAKRVFDSSXG 119
Query: 283 KKNIASWNAMLVGYIRNGL 301
+++ +WN+ML Y+ L
Sbjct: 120 YRDLVTWNSMLAAYLEXNL 138
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 71/167 (42%), Gaps = 7/167 (4%)
Query: 63 DTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM-LLVFPAWIIV 121
+ A ++F+ +D SW ++ G + + LF + H+ L +
Sbjct: 212 EDALKIFZHXNXKDLVSWNTILTGXSQNGLSENALRLFQXI------HLDHLXTDQYTFA 265
Query: 122 CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH 181
VL++C + LG+Q+H L+ K G N + +LI Y K +EDA F +
Sbjct: 266 AVLRSCSDLATLHLGRQIHVLVVKSGXEGNEYVASALIFMYSKCGIIEDAWESFESSLKE 325
Query: 182 NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+V W + I + G + F M RIK + TF + L AC
Sbjct: 326 TSVTWNSIIFAYAQHGQGKIAJDLFYLMTERRIKLDHVTFVAALTAC 372
>gi|125603224|gb|EAZ42549.1| hypothetical protein OsJ_27115 [Oryza sativa Japonica Group]
Length = 696
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 85/288 (29%), Positives = 129/288 (44%), Gaps = 14/288 (4%)
Query: 50 NRLLLMHV--SCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRK 107
N+LL + S L AR++FDE+P RD SW ++ + E L M +
Sbjct: 29 NQLLTAYSRSSPDGLAAARRVFDEVPRRDEVSWNALLAAQAASGAHPEAWRLLRAMHAQG 88
Query: 108 KGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
L + + L++ +G Q+ L K G + N+ +L++ Y K
Sbjct: 89 -----LASNTFALGSALRSAAVARRPAIGAQLQSLALKSGLANNVFAASALLDVYAKCGR 143
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
+ DA VF + NTV W A I G F EM RE + + TF+S+L A
Sbjct: 144 VRDARQVFDGMPERNTVSWNALIAGYTESGDMASALELFLEMEREGLAPDEATFASLLTA 203
Query: 228 CGGVDDDGNC--GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
G +C Q+H IVK G V + Y +C L+D+ R+F+ I D ++
Sbjct: 204 VEGP----SCFLMHQLHGKIVKYGSALGLTVLNAAITAYSQCGSLKDSRRIFDGIGDIRD 259
Query: 286 IASWNAMLVGYIRNGLYVEATK-FLYLMKASGIQIQESLINDLRIACS 332
+ SWNAML Y NG+ EA K F+ +M+ SG+ + +CS
Sbjct: 260 LISWNAMLGAYTHNGMDDEAMKFFVRMMQESGVHPDMYSFTSIISSCS 307
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 76/275 (27%), Positives = 131/275 (47%), Gaps = 12/275 (4%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL ++ CG++ ARQ+FD MP R+ SW +I GY + D + LF EM +
Sbjct: 134 LLDVYAKCGRVRDARQVFDGMPERNTVSWNALIAGYTESGDMASALELFLEMEREGLAPD 193
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
F + + +C L Q+HG + K GS+ +++ + I Y + L+D+
Sbjct: 194 EATFASLLTAVEGPSCF------LMHQLHGKIVKYGSALGLTVLNAAITAYSQCGSLKDS 247
Query: 172 DFVFSQLKR-HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRER-IKKNSYTFSSVLKACG 229
+F + + + W A + G + F M +E + + Y+F+S++ +C
Sbjct: 248 RRIFDGIGDIRDLISWNAMLGAYTHNGMDDEAMKFFVRMMQESGVHPDMYSFTSIISSCS 307
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCR---LLRDAERVFELIVDKKNI 286
D + GR +H ++K LE V L+ MY + ++ DA + F +V K +
Sbjct: 308 EHGHDDHQGRVIHGLVIKSALEGVTPVCNALIAMYTRYNENCMMEDAYKCFNSLVLKDTV 367
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQE 321
SWN+ML GY ++GL +A KF M + ++ E
Sbjct: 368 -SWNSMLTGYSQHGLSADALKFFRCMCSENVRTDE 401
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 70/260 (26%), Positives = 119/260 (45%), Gaps = 11/260 (4%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEM-PLRDFNSWAVMIVGYVDVADYQECITLFAEMM 104
L LN + + CG L +R++FD + +RD SW M+ Y E + F MM
Sbjct: 228 LTVLNAAITAYSQCGSLKDSRRIFDGIGDIRDLISWNAMLGAYTHNGMDDEAMKFFVRMM 287
Query: 105 KRKKGHM-LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYG 163
+ H + F + I C + G+ +HGL+ K + +LI Y
Sbjct: 288 QESGVHPDMYSFTSIISSCSEHG----HDDHQGRVIHGLVIKSALEGVTPVCNALIAMYT 343
Query: 164 KFR---CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYT 220
++ +EDA F+ L +TV W + + + G F+ M E ++ + Y
Sbjct: 344 RYNENCMMEDAYKCFNSLVLKDTVSWNSMLTGYSQHGLSADALKFFRCMCSENVRTDEYA 403
Query: 221 FSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELI 280
FS+ L++ + G+Q+H ++ G S+++V L+ MY K ++ DA + FE
Sbjct: 404 FSAALRSSSELAVL-QLGKQIHGLVIHSGFASNDFVSSSLIFMYSKSGIIDDARKSFEE- 461
Query: 281 VDKKNIASWNAMLVGYIRNG 300
DK + WNAM+ GY ++G
Sbjct: 462 ADKSSSVPWNAMIFGYAQHG 481
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 67/293 (22%), Positives = 126/293 (43%), Gaps = 14/293 (4%)
Query: 8 ITTDMY--TCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQ---L 62
+ DMY T +I C+ +++ + + ++ N L+ M+ + +
Sbjct: 292 VHPDMYSFTSIISSCSEHGHDDHQGRVIHGLVIKSALEGVTPVCNALIAMYTRYNENCMM 351
Query: 63 DTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVC 122
+ A + F+ + L+D SW M+ GY + + F M F A
Sbjct: 352 EDAYKCFNSLVLKDTVSWNSMLTGYSQHGLSADALKFFRCMCSENVRTDEYAFSA----- 406
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
L++ ++LGKQ+HGL+ G + N ++ SLI Y K ++DA F + + +
Sbjct: 407 ALRSSSELAVLQLGKQIHGLVIHSGFASNDFVSSSLIFMYSKSGIIDDARKSFEEADKSS 466
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--GGVDDDGNCGRQ 240
+V W A I + G V F EM + + + TF ++ +C G+ D+G+
Sbjct: 467 SVPWNAMIFGYAQHGQAENVDILFNEMLQRKAPLDHITFVGLITSCSHAGLVDEGSEILN 526
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
+ L + Y CG VD+YG+ L A+++ + + + + W +L
Sbjct: 527 TMETKYGVPLRMEHYA-CG-VDLYGRAGQLDKAKKLIDSMPFEPDAMVWMTLL 577
>gi|42566761|ref|NP_193101.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635639|sp|Q9SVP7.2|PP307_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g13650
gi|332657909|gb|AEE83309.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 1064
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/274 (29%), Positives = 142/274 (51%), Gaps = 16/274 (5%)
Query: 29 AFELLNHIRKRV---NIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIV 85
AF+++ I R+ ++ + + N L+ ++ G +D AR++FD + L+D +SW MI
Sbjct: 202 AFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMIS 261
Query: 86 GYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLF 144
G E I LF +M ++L + P + VL AC ++E+G+Q+HGL+
Sbjct: 262 GLSKNECEAEAIRLFCDM------YVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVL 315
Query: 145 KLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFN 204
KLG S + + +L++ Y L A+ +FS + + + V + I + G+ +
Sbjct: 316 KLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAME 375
Query: 205 DFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC--GRQMHANIVKIGLESDEYVQCGLVD 262
FK M + ++ +S T +S++ AC DG G+Q+HA K+G S+ ++ L++
Sbjct: 376 LFKRMHLDGLEPDSNTLASLVVACSA---DGTLFRGQQLHAYTTKLGFASNNKIEGALLN 432
Query: 263 MYGKCRLLRDAERVFELIVDKKNIASWNAMLVGY 296
+Y KC + A F L + +N+ WN MLV Y
Sbjct: 433 LYAKCADIETALDYF-LETEVENVVLWNVMLVAY 465
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 88/325 (27%), Positives = 144/325 (44%), Gaps = 14/325 (4%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRV---NIKPTLLFLNRLLLMHVSCGQLDTARQLF 69
Y ++K C G EL I ++ N + + L+ M+ G+LDTA +
Sbjct: 493 YPSILKTCI----RLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDIL 548
Query: 70 DEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVC 129
+D SW MI GY + +T F +M+ R + + + AC
Sbjct: 549 IRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRG-----IRSDEVGLTNAVSACAG 603
Query: 130 TMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAK 189
++ G+Q+H G S ++ +L+ Y + +E++ F Q + + + W A
Sbjct: 604 LQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNAL 663
Query: 190 IVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIG 249
+ + G+ + F M RE I N++TF S +KA + G+Q+HA I K G
Sbjct: 664 VSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQ-GKQVHAVITKTG 722
Query: 250 LESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFL 309
+S+ V L+ MY KC + DAE+ F L V KN SWNA++ Y ++G EA
Sbjct: 723 YDSETEVCNALISMYAKCGSISDAEKQF-LEVSTKNEVSWNAIINAYSKHGFGSEALDSF 781
Query: 310 YLMKASGIQIQESLINDLRIACSSI 334
M S ++ + + ACS I
Sbjct: 782 DQMIHSNVRPNHVTLVGVLSACSHI 806
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 79/290 (27%), Positives = 131/290 (45%), Gaps = 9/290 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ ++ G L +A +F M RD ++ +I G ++ + LF M
Sbjct: 327 NALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRM------ 380
Query: 110 HMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
H+ + P + + ++ AC + G+Q+H KLG + N + G+L+N Y K +
Sbjct: 381 HLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADI 440
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
E A F + + N V+W +V F F++M E I N YT+ S+LK C
Sbjct: 441 ETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTC 500
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
+ D G Q+H+ I+K + + YV L+DMY K L A + + K++ S
Sbjct: 501 IRLGD-LELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDIL-IRFAGKDVVS 558
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASK 338
W M+ GY + +A M GI+ E + + AC+ + A K
Sbjct: 559 WTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALK 608
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/266 (25%), Positives = 119/266 (44%), Gaps = 7/266 (2%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL ++ C ++TA F E + + W VM+V Y + D + +F +M +
Sbjct: 430 LLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPN 489
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+P+ +LK C+ ++ELG+Q+H + K N + LI+ Y K L+ A
Sbjct: 490 QYTYPS-----ILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTA 544
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
+ + + V WT I + + F++M I+ + ++ + AC G+
Sbjct: 545 WDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGL 604
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
G+Q+HA G SD Q LV +Y +C + ++ FE NIA WNA
Sbjct: 605 QALKE-GQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIA-WNA 662
Query: 292 MLVGYIRNGLYVEATKFLYLMKASGI 317
++ G+ ++G EA + M GI
Sbjct: 663 LVSGFQQSGNNEEALRVFVRMNREGI 688
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 112/250 (44%), Gaps = 9/250 (3%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L F N L+ ++ CG+++ + F++ D +W ++ G+ + +E + +F M +
Sbjct: 626 LPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNR 685
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
+ F + +KA T NM+ GKQVH ++ K G + +LI+ Y K
Sbjct: 686 EGIDNNNFTFGS-----AVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKC 740
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
+ DA+ F ++ N V W A I + G + + F +M ++ N T VL
Sbjct: 741 GSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVL 800
Query: 226 KACG--GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
AC G+ D G + + + + + YV C +VDM + LL A+ + + K
Sbjct: 801 SACSHIGLVDKGIAYFESMNSEYGLSPKPEHYV-C-VVDMLTRAGLLSRAKEFIQEMPIK 858
Query: 284 KNIASWNAML 293
+ W +L
Sbjct: 859 PDALVWRTLL 868
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 75/279 (26%), Positives = 123/279 (44%), Gaps = 16/279 (5%)
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI 119
G L A ++FDEMP R +W MI E LF M+ F
Sbjct: 134 GDLYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSG-- 191
Query: 120 IVCVLKACV-CTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL 178
VL+AC ++ ++ +Q+H + G + + LI+ Y + ++ A VF L
Sbjct: 192 ---VLEACRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGL 248
Query: 179 KRHNTVVWTAKIV----NNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDD 234
+ + W A I N C E ++F D +G I Y FSSVL AC + +
Sbjct: 249 RLKDHSSWVAMISGLSKNEC-EAEAIRLFCDMYVLG---IMPTPYAFSSVLSACKKI-ES 303
Query: 235 GNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLV 294
G Q+H ++K+G SD YV LV +Y L AE +F + +++ ++N ++
Sbjct: 304 LEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNM-SQRDAVTYNTLIN 362
Query: 295 GYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSS 333
G + G +A + M G++ + + L +ACS+
Sbjct: 363 GLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSA 401
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 98/218 (44%), Gaps = 2/218 (0%)
Query: 123 VLKACVCTM-NMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH 181
+L+ C+ T +++ G+++H + KLG N L+ L +FY L A VF ++
Sbjct: 90 LLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPER 149
Query: 182 NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQM 241
W I +VF F M E + N TFS VL+AC G + Q+
Sbjct: 150 TIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQI 209
Query: 242 HANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGL 301
HA I+ GL V L+D+Y + + A RVF+ + K+ +SW AM+ G +N
Sbjct: 210 HARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGL-RLKDHSSWVAMISGLSKNEC 268
Query: 302 YVEATKFLYLMKASGIQIQESLINDLRIACSSISASKI 339
EA + M GI + + AC I + +I
Sbjct: 269 EAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEI 306
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 214 IKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDA 273
I+ N T +L+ C + + GR++H+ I+K+GL+S+ + L D Y L A
Sbjct: 80 IRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGA 139
Query: 274 ERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
+VF+ + + + I +WN M+ L E M + + E + + AC
Sbjct: 140 FKVFDEMPE-RTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEAC 196
>gi|410109959|gb|AFV61059.1| pentatricopeptide repeat-containing protein 81, partial
[Acantholippia seriphioides]
Length = 376
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 81/289 (28%), Positives = 138/289 (47%), Gaps = 10/289 (3%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMP-LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRK 107
LN + + CG ++ A+++FD RD +W M+ Y++ + +F EM+K++
Sbjct: 82 LNXTITAYAECGCIEDAKRVFDSSDGYRDLVTWNSMLAAYLEHNLEEYGFNIFLEMVKQR 141
Query: 108 KGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF-- 165
L A+ + V+ AC LGK +HGL+ K G + ++ +LI+ Y K
Sbjct: 142 -----LEMDAYTLSSVISACFEDTQQSLGKSLHGLVIKKGLDQVTQISNALISMYLKSNS 196
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
R +EDA +F + + V W + + G F+ + + + + YTF++VL
Sbjct: 197 RTVEDALKIFEHINIKDLVSWNTILTGLSQNGLSENALRLFQNIHLDHLVIDQYTFAAVL 256
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
++C + GRQ+H +VK G E +EYV L+ MY KC ++ DA FE K+
Sbjct: 257 RSCSDLAT-LQLGRQIHVLVVKSGFEGNEYVASALIFMYSKCGIIEDAWESFE-SSHKET 314
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
+WN+++ Y ++G A LM I++ ACS I
Sbjct: 315 SVTWNSIIFAYAQHGQGKIALDLFNLMTERHIKLDHVTFVAALTACSHI 363
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 73/245 (29%), Positives = 118/245 (48%), Gaps = 12/245 (4%)
Query: 69 FDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEM-MKRKKGHMLLVFPAWIIVCVLKAC 127
F M R+ SW +I GY ++ + + CITLF M M+ + P +L
Sbjct: 1 FKYMQERNAVSWNALIGGYAEMGNLESCITLFVGMEMEGVRVDDATFAP------LLTLL 54
Query: 128 VCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVF-SQLKRHNTVVW 186
+ +L +Q+HG + K G ++ I Y + C+EDA VF S + V W
Sbjct: 55 YDAESYDLTRQLHGKIMKRGLEHENTVLNXTITAYAECGCIEDAKRVFDSSDGYRDLVTW 114
Query: 187 TAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIV 246
+ + FN F EM ++R++ ++YT SSV+ AC D + G+ +H ++
Sbjct: 115 NSMLAAYLEHNLEEYGFNIFLEMVKQRLEMDAYTLSSVISACFE-DTQQSLGKSLHGLVI 173
Query: 247 KIGLESDEYVQCGLVDMYGK--CRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVE 304
K GL+ + L+ MY K R + DA ++FE I + K++ SWN +L G +NGL
Sbjct: 174 KKGLDQVTQISNALISMYLKSNSRTVEDALKIFEHI-NIKDLVSWNTILTGLSQNGLSEN 232
Query: 305 ATKFL 309
A +
Sbjct: 233 ALRLF 237
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 86/197 (43%), Gaps = 10/197 (5%)
Query: 50 NRLLLMHVSCGQ--LDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRK 107
N L+ M++ ++ A ++F+ + ++D SW ++ G + + LF +
Sbjct: 185 NALISMYLKSNSRTVEDALKIFEHINIKDLVSWNTILTGLSQNGLSENALRLFQNIHLDH 244
Query: 108 KGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
LV + VL++C ++LG+Q+H L+ K G N + +LI Y K
Sbjct: 245 -----LVIDQYTFAAVLRSCSDLATLQLGRQIHVLVVKSGFEGNEYVASALIFMYSKCGI 299
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
+EDA F + +V W + I + G + F M IK + TF + L A
Sbjct: 300 IEDAWESFESSHKETSVTWNSIIFAYAQHGQGKIALDLFNLMTERHIKLDHVTFVAALTA 359
Query: 228 C---GGVDDDGNCGRQM 241
C G V++ N R M
Sbjct: 360 CSHIGLVEEGLNLLRSM 376
>gi|326529685|dbj|BAK04789.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 879
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 86/291 (29%), Positives = 142/291 (48%), Gaps = 12/291 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFN--SWAVMIVGYVDVADYQECITLFAEMMKRK 107
N L+ M+ G +D AR++FDE RD N SW M+ +V + + LF EM+
Sbjct: 139 NALVAMYGGFGFVDEARRVFDEAA-RDRNAVSWNGMMSAFVKNDRCSDAVELFGEMVWSG 197
Query: 108 KGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166
V P + CV+ AC + ++E G++VH ++ + G +++ +L++ Y K
Sbjct: 198 ------VRPNEFGFSCVVNACTGSRDLEAGRKVHAMVVRTGYDKDVFTANALVDMYSKLG 251
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
+ A VF ++ + + V W A I GH +M + N +T SS+LK
Sbjct: 252 DIHMAALVFGKVPKTDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILK 311
Query: 227 -ACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
G GRQ+H ++K +SD+Y+ LVDMY K LL DA +VFE I +K+
Sbjct: 312 ACAGAGAGAFALGRQIHGFMIKACADSDDYIGVALVDMYAKYGLLDDARKVFEWI-PRKD 370
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+ WNA++ G G + E+ M+ G I + + + + +S+ A
Sbjct: 371 LLLWNALISGCSHGGCHGESLSLFCRMRKEGSDINRTTLAAVLKSTASLEA 421
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 84/271 (30%), Positives = 125/271 (46%), Gaps = 11/271 (4%)
Query: 48 FLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRK 107
F N LL + C +AR++FDE P SW+ ++ Y + A +E + F M R
Sbjct: 39 FRNHLLSFYSKCRLPGSARRVFDETPDPCHVSWSSLVTAYSNNALPREALAAFRAMRARG 98
Query: 108 KGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
P VLK C + LG QVH + G S +I + +L+ YG F
Sbjct: 99 VRCNEFALP-----IVLK---CAPDAGLGVQVHAVAVSTGLSGDIFVANALVAMYGGFGF 150
Query: 168 LEDADFVFSQLKR-HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
+++A VF + R N V W + + F EM ++ N + FS V+
Sbjct: 151 VDEARRVFDEAARDRNAVSWNGMMSAFVKNDRCSDAVELFGEMVWSGVRPNEFGFSCVVN 210
Query: 227 ACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
AC G D GR++HA +V+ G + D + LVDMY K + A VF V K ++
Sbjct: 211 ACTG-SRDLEAGRKVHAMVVRTGYDKDVFTANALVDMYSKLGDIHMAALVFGK-VPKTDV 268
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGI 317
SWNA + G + +G A + L MK+SG+
Sbjct: 269 VSWNAFISGCVLHGHDQHALELLLQMKSSGL 299
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/249 (29%), Positives = 121/249 (48%), Gaps = 7/249 (2%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ G LD AR++F+ +P +D W +I G + E ++LF M RK+G
Sbjct: 346 LVDMYAKYGLLDDARKVFEWIPRKDLLLWNALISGCSHGGCHGESLSLFCRM--RKEGSD 403
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+ + VLK+ + QVH L K+G + + LI+ Y K CL A
Sbjct: 404 I---NRTTLAAVLKSTASLEAISDTTQVHALAEKIGFLSDSHVVNGLIDSYWKCNCLRYA 460
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
+ VF + N + +T+ I + H F EM R+ ++ + + SS+L AC +
Sbjct: 461 NKVFEEHSSDNIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLEPDPFVLSSLLNACASL 520
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
G+Q+HA+++K +D + LV Y KC + DA+ F + D K + SW+A
Sbjct: 521 SAYEQ-GKQVHAHLIKRKFMTDVFAGNALVYTYAKCGSIEDADLAFSGLPD-KGVVSWSA 578
Query: 292 MLVGYIRNG 300
M+ G ++G
Sbjct: 579 MIGGLAQHG 587
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 112/249 (44%), Gaps = 9/249 (3%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
+N L+ + C L A ++F+E + ++ MI ++ I LF EM+++
Sbjct: 444 VNGLIDSYWKCNCLRYANKVFEEHSSDNIIAFTSMITALSQCDHGEDAIKLFMEMLRKG- 502
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
L +++ +L AC E GKQVH L K ++ +L+ Y K +
Sbjct: 503 ----LEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRKFMTDVFAGNALVYTYAKCGSI 558
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
EDAD FS L V W+A I + GH + + F+ M ERI N T +SVL AC
Sbjct: 559 EDADLAFSGLPDKGVVSWSAMIGGLAQHGHGKRALDVFRRMVDERIAPNHITLTSVLCAC 618
Query: 229 --GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
G+ D+ + I ++E+ C ++D+ G+ L DA + + + N
Sbjct: 619 NHAGLVDEAKGYFSSMKEMFGID-RTEEHYSC-MIDLLGRAGKLDDAMELVNSMPFEANA 676
Query: 287 ASWNAMLVG 295
A W A+L
Sbjct: 677 AVWGALLAA 685
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 85/202 (42%), Gaps = 6/202 (2%)
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
I +L T ++ LG +H L K G + L++FY K R A VF +
Sbjct: 7 ISPLLTRYAATQSLFLGAHIHAHLLKSGLLH--AFRNHLLSFYSKCRLPGSARRVFDETP 64
Query: 180 RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGR 239
V W++ + + F+ M ++ N + VLK D G
Sbjct: 65 DPCHVSWSSLVTAYSNNALPREALAAFRAMRARGVRCNEFALPIVLKCA----PDAGLGV 120
Query: 240 QMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRN 299
Q+HA V GL D +V LV MYG + +A RVF+ +N SWN M+ +++N
Sbjct: 121 QVHAVAVSTGLSGDIFVANALVAMYGGFGFVDEARRVFDEAARDRNAVSWNGMMSAFVKN 180
Query: 300 GLYVEATKFLYLMKASGIQIQE 321
+A + M SG++ E
Sbjct: 181 DRCSDAVELFGEMVWSGVRPNE 202
>gi|356519999|ref|XP_003528655.1| PREDICTED: pentatricopeptide repeat-containing protein At2g36980,
mitochondrial-like [Glycine max]
Length = 629
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 87/314 (27%), Positives = 138/314 (43%), Gaps = 38/314 (12%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ + + +L A +LF MP R +W +MIVG+ + + C+ LF EM
Sbjct: 145 LMFAYANSCRLGVALELFRSMPERVVIAWNIMIVGHARRGEVEACLHLFKEMCGS----- 199
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
L W ++ AC +M M G VHG + K G S + + S+++FY K C +DA
Sbjct: 200 LCQPDQWTFSALINACAVSMEMLYGCMVHGFVIKSGWSSAMEVKNSMLSFYAKLECQDDA 259
Query: 172 DFVFSQL-------------------------------KRHNTVVWTAKIVNNCREGHFH 200
VF+ N V WT+ I R G+
Sbjct: 260 MKVFNSFGCFNQVSWNAIIDAHMKLGDTQKAFLAFQKAPERNIVSWTSMIAGYTRNGNGE 319
Query: 201 QVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGL 260
+ F ++ R ++ + +VL AC + + GR +H I++ GL+ YV L
Sbjct: 320 LALSMFLDLTRNSVQLDDLVAGAVLHACASLAILVH-GRMVHGCIIRHGLDKYLYVGNSL 378
Query: 261 VDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQ 320
V+MY KC ++ + F I+D K++ SWN+ML + +G EA M ASG++
Sbjct: 379 VNMYAKCGDIKGSRLAFHDILD-KDLISWNSMLFAFGLHGRANEAICLYREMVASGVKPD 437
Query: 321 ESLINDLRIACSSI 334
E L + CS +
Sbjct: 438 EVTFTGLLMTCSHL 451
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 86/339 (25%), Positives = 136/339 (40%), Gaps = 69/339 (20%)
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI 119
GQ+ AR+LFDE+P +D +W M+ Y V YQ+ ++LF M F A
Sbjct: 19 GQISDARKLFDEIPHKDSVAWNAMLTAYSHVGLYQQSLSLFGCMRISHSKPDNFSFSA-- 76
Query: 120 IVCVLKACVC--TMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQ 177
VL AC C + G +H L+ G ++ + SLI+ YGK +DA VF +
Sbjct: 77 ---VLNACACAGASYVRFGATLHALVVVSGYLSSLPVANSLIDMYGKCLLPDDARKVFDE 133
Query: 178 LKRHNTVVWTA-------------------------------KIVNNCREGHFHQVFNDF 206
N V W + IV + R G + F
Sbjct: 134 TSDSNEVTWCSLMFAYANSCRLGVALELFRSMPERVVIAWNIMIVGHARRGEVEACLHLF 193
Query: 207 KEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGK 266
KEM + + +TFS+++ AC V + G +H ++K G S V+ ++ Y K
Sbjct: 194 KEMCGSLCQPDQWTFSALINAC-AVSMEMLYGCMVHGFVIKSGWSSAMEVKNSMLSFYAK 252
Query: 267 CRLLRDAERVF-----------ELIVD-------------------KKNIASWNAMLVGY 296
DA +VF I+D ++NI SW +M+ GY
Sbjct: 253 LECQDDAMKVFNSFGCFNQVSWNAIIDAHMKLGDTQKAFLAFQKAPERNIVSWTSMIAGY 312
Query: 297 IRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
RNG A + + +Q+ + + + AC+S++
Sbjct: 313 TRNGNGELALSMFLDLTRNSVQLDDLVAGAVLHACASLA 351
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 103/232 (44%), Gaps = 11/232 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N ++ H+ G A F + P R+ SW MI GY + + +++F ++ +
Sbjct: 275 NAIIDAHMKLGDTQKAFLAFQKAPERNIVSWTSMIAGYTRNGNGELALSMFLDLTRNSVQ 334
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
LV A VL AC + G+ VHG + + G + + + SL+N Y K ++
Sbjct: 335 LDDLVAGA-----VLHACASLAILVHGRMVHGCIIRHGLDKYLYVGNSLVNMYAKCGDIK 389
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
+ F + + + W + + G ++ ++EM +K + TF+ +L C
Sbjct: 390 GSRLAFHDILDKDLISWNSMLFAFGLHGRANEAICLYREMVASGVKPDEVTFTGLLMTCS 449
Query: 230 --GVDDDGNCGRQMHANIVKIGLESD-EYVQCGLVDMYGKCRLLRDAERVFE 278
G+ +G Q + ++ GL ++V C +VDM G+ + +A + E
Sbjct: 450 HLGLISEGFAFFQ--SMCLEFGLSHGMDHVAC-MVDMLGRGGYVAEARSLAE 498
>gi|147771387|emb|CAN76239.1| hypothetical protein VITISV_016538 [Vitis vinifera]
Length = 503
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/252 (31%), Positives = 129/252 (51%), Gaps = 11/252 (4%)
Query: 83 MIVGYVDVADYQECITLFAEMMK--RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVH 140
M+ GY+ D ++ + LF+ + K K + L A KAC C + ++ GKQ+H
Sbjct: 1 MMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAA-------KACGCLVLLDQGKQIH 53
Query: 141 GLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFH 200
K G ++ + +++ Y K + +A VF+ + + V WT+ I G+
Sbjct: 54 AHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNED 113
Query: 201 QVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGL 260
Q + M + R+ + YTF++++KA V GRQ+HAN++K+ SD +V L
Sbjct: 114 QALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQ-GRQLHANVIKLDCVSDPFVGTSL 172
Query: 261 VDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQ 320
VDMY KC + DA R+F+ + + +NIA WNAMLVG ++G EA MK+ GI+
Sbjct: 173 VDMYAKCGNIEDAYRLFKKM-NVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPD 231
Query: 321 ESLINDLRIACS 332
+ ACS
Sbjct: 232 RVSFIGILSACS 243
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 123/258 (47%), Gaps = 10/258 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
+L M++ CG + A +F+ + D +W MI G VD + + + ++ M + +
Sbjct: 71 ILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSR---- 126
Query: 112 LLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
V P + ++KA C +E G+Q+H + KL + + SL++ Y K +ED
Sbjct: 127 --VMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIED 184
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
A +F ++ N +W A +V + G+ + N FK M I+ + +F +L AC
Sbjct: 185 AYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSH 244
Query: 231 VDDDGNCGRQMHANIVKIGLESD-EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+H+ G+E + E+ C LVD G+ L+++A++V E + K + AS
Sbjct: 245 AGLTSEAYEYLHSMPNDYGIEPEIEHYSC-LVDALGRAGLVQEADKVIETMPFKAS-ASI 302
Query: 290 NAMLVGYIRNGLYVEATK 307
N L+G R VE K
Sbjct: 303 NRALLGACRIQGDVEXGK 320
>gi|147846491|emb|CAN79511.1| hypothetical protein VITISV_014157 [Vitis vinifera]
Length = 1007
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 83/275 (30%), Positives = 137/275 (49%), Gaps = 12/275 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N LL M+ ++ A +LFDEM RD SW+VMI GYV + + LF EM
Sbjct: 189 NSLLSMYAD-NDMERAEELFDEMCERDVISWSVMIGGYVQTGEAXMALQLFLEMXS---- 243
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ + +V VLKAC T ++ +G+ VHG++ G ++ + S+I+ Y K E
Sbjct: 244 NAXIELDGITMVSVLKACANTGDISMGRSVHGVVICRGLDYDLFVGNSIIDMYSKXDDHE 303
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A F+++ NTV W + I R + + F MG+ + + T ++L++C
Sbjct: 304 SAFKAFNEMPCRNTVSWNSIISGLVRTEKHSEALSLFYSMGKAGFRADEVTLVNLLQSCK 363
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
D C + +H+ +++ G E +E+V L+D Y KC L+ A ++F+ + K+ SW
Sbjct: 364 YFVDPFQC-KFIHSIVIRWGYELNEFVINSLIDAYSKCDLIELAWKLFDRL-KTKDTVSW 421
Query: 290 NAMLVGYIRNGLYVEATKFLYLM-----KASGIQI 319
+AM+ G+ G EA M K +G+ I
Sbjct: 422 SAMIAGFNHCGKPDEAIALFQEMNQAQEKPNGVTI 456
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 83/285 (29%), Positives = 136/285 (47%), Gaps = 11/285 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N ++ M+ ++A + F+EMP R+ SW +I G V + E ++LF M G
Sbjct: 290 NSIIDMYSKXDDHESAFKAFNEMPCRNTVSWNSIISGLVRTEKHSEALSLFYSM-----G 344
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+V +L++C ++ K +H ++ + G N + SLI+ Y K +E
Sbjct: 345 KAGFRADEVTLVNLLQSCKYFVDPFQCKFIHSIVIRWGYELNEFVINSLIDAYSKCDLIE 404
Query: 170 DADFVFSQLKRHNTVVWTAKIV--NNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
A +F +LK +TV W+A I N+C G + F+EM + + K N T S+L+A
Sbjct: 405 LAWKLFDRLKTKDTVSWSAMIAGFNHC--GKPDEAIALFQEMNQAQEKPNGVTILSLLEA 462
Query: 228 CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
V D + H ++ GL ++ V ++DMY KC + + + F+ I + KNI
Sbjct: 463 F-SVSADLKRSKWAHGIXIRRGLAAEVAVGTAILDMYAKCGEIGLSRKAFDQIPE-KNIV 520
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
SW AM+ NGL +A L MK G++ + ACS
Sbjct: 521 SWGAMIAACGMNGLARDALALLSEMKLHGLKPNXVTTLSVLSACS 565
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 75/280 (26%), Positives = 128/280 (45%), Gaps = 15/280 (5%)
Query: 56 HVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVF 115
++ G LD+A +FD M RD SW +MI G++ + F ++ ++
Sbjct: 94 YMKTGALDSALFVFDSMRSRDSVSWNIMIHGHLSRGASDXGLWWF------RQARVIAFE 147
Query: 116 P-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFV 174
P +V + AC ME G ++HG + + G S+ SL++ Y +E A+ +
Sbjct: 148 PNVSTLVLAIHACRSLGAMEEGLKMHGYIIRSGFLDIPSVQNSLLSMYAD-NDMERAEEL 206
Query: 175 FSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEM-GRERIKKNSYTFSSVLKACGGVDD 233
F ++ + + W+ I + G F EM I+ + T SVLKAC D
Sbjct: 207 FDEMCERDVISWSVMIGGYVQTGEAXMALQLFLEMXSNAXIELDGITMVSVLKACANTGD 266
Query: 234 DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK--KNIASWNA 291
+ GR +H ++ GL+ D +V ++DMY K D E F+ + +N SWN+
Sbjct: 267 I-SMGRSVHGVVICRGLDYDLFVGNSIIDMYSK---XDDHESAFKAFNEMPCRNTVSWNS 322
Query: 292 MLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
++ G +R + EA Y M +G + E + +L +C
Sbjct: 323 IISGLVRTEKHSEALSLFYSMGKAGFRADEVTLVNLLQSC 362
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 64/251 (25%), Positives = 114/251 (45%), Gaps = 15/251 (5%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
+N L+ + C ++ A +LFD + +D SW+ MI G+ E I LF EM + ++
Sbjct: 390 INSLIDAYSKCDLIELAWKLFDRLKTKDTVSWSAMIAGFNHCGKPDEAIALFQEMNQAQE 449
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+ I+ +L+A + +++ K HG+ + G + +++ ++++ Y K +
Sbjct: 450 KPNGVT-----ILSLLEAFSVSADLKRSKWAHGIXIRRGLAAEVAVGTAILDMYAKCGEI 504
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+ F Q+ N V W A I G EM +K N T SVL AC
Sbjct: 505 GLSRKAFDQIPEKNIVSWGAMIAACGMNGLARDALALLSEMKLHGLKPNXVTTLSVLSAC 564
Query: 229 --GGVDDDGNCGRQMHANIVK-IGLESD-EYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
GG+ ++ G N+V+ G+E E+ C +VDM + L A + E + ++
Sbjct: 565 SHGGLVEE---GLSFFENMVQDHGVEPGLEHYSC-MVDMLXRAGKLNXAMNLIEKMPERM 620
Query: 285 NIAS--WNAML 293
+ W A+L
Sbjct: 621 RDGAGLWGALL 631
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 112/246 (45%), Gaps = 15/246 (6%)
Query: 92 DYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRN 151
D E + + +M KK L P ++ +LKAC ++ + GK +H L K G
Sbjct: 29 DSWEACSRYHQM---KKAGAQLTDPT-LVHSILKAC-SSLPVRHGKSIHASLLKQGFDSL 83
Query: 152 ISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGR 211
S S +FY K L+ A FVF ++ ++V W I + G F++
Sbjct: 84 TSTGNSXXDFYMKTGALDSALFVFDSMRSRDSVSWNIMIHGHLSRGASDXGLWWFRQARV 143
Query: 212 ERIKKNSYTFSSVLKAC---GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCR 268
+ N T + AC G +++ G +MH I++ G VQ L+ MY
Sbjct: 144 IAFEPNVSTLVLAIHACRSLGAMEE----GLKMHGYIIRSGFLDIPSVQNSLLSMYADND 199
Query: 269 LLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATK-FLYLMKASGIQIQESLINDL 327
+ R AE +F+ + + +++ SW+ M+ GY++ G A + FL + + I++ + +
Sbjct: 200 MER-AEELFDEMCE-RDVISWSVMIGGYVQTGEAXMALQLFLEMXSNAXIELDGITMVSV 257
Query: 328 RIACSS 333
AC++
Sbjct: 258 LKACAN 263
>gi|449439011|ref|XP_004137281.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39350-like [Cucumis sativus]
Length = 787
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 95/331 (28%), Positives = 156/331 (47%), Gaps = 25/331 (7%)
Query: 5 CLPITTDMYT--CLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFL-NRLLLMHVSCGQ 61
C P D YT +IK C+ S +L H R V+ + +F+ N LL M+++CG+
Sbjct: 180 CWP---DKYTFPLVIKACSVM--SMLNVGVLIHGRALVSGFSSNMFVQNSLLAMYMNCGK 234
Query: 62 LDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWII 120
+ ARQ+F+ M R SW MI G+ +E + +F MM + V P + I
Sbjct: 235 VGLARQVFNVMLKRSVVSWNTMISGWFQNGRPEEALAVFNSMMDAR------VEPDSATI 288
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
V L +C +ELG +VH L+ K I + +L++ Y + +++A VF++ K
Sbjct: 289 VSALPSCGHLKELELGIKVHKLVQKNHLQEKIEVRNALVDMYSRCGGMDEASLVFAETKE 348
Query: 181 HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC--- 237
+ + WT+ I G+ M + + N+ T +S+L AC + C
Sbjct: 349 KDVITWTSMINGYIMNGNAKSALALCPAMQLDGVVPNAVTLASLLSACASL-----CCLK 403
Query: 238 -GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGY 296
G+ +HA +++ L+SD V L+DMY KC + + +VF K+ + WNA+L G
Sbjct: 404 QGKSLHAWVMRKKLDSDVLVVTALIDMYAKCNAVSYSFQVFAKTSMKRTVP-WNALLSGL 462
Query: 297 IRNGLYVEATKFLYLMKASGIQIQESLINDL 327
I N L EA M ++ + N +
Sbjct: 463 IHNELAREAVGLFKSMLIEEVEANHATFNSV 493
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 80/300 (26%), Positives = 137/300 (45%), Gaps = 13/300 (4%)
Query: 34 NHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADY 93
NH+++++ ++ N L+ M+ CG +D A +F E +D +W MI GY+ +
Sbjct: 314 NHLQEKIEVR------NALVDMYSRCGGMDEASLVFAETKEKDVITWTSMINGYIMNGNA 367
Query: 94 QECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNIS 153
+ + L M +V A + +L AC ++ GK +H + + ++
Sbjct: 368 KSALALCPAMQLDG-----VVPNAVTLASLLSACASLCCLKQGKSLHAWVMRKKLDSDVL 422
Query: 154 LTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRER 213
+ +LI+ Y K + + VF++ TV W A + + FK M E
Sbjct: 423 VVTALIDMYAKCNAVSYSFQVFAKTSMKRTVPWNALLSGLIHNELAREAVGLFKSMLIEE 482
Query: 214 IKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDA 273
++ N TF+SV+ A + D +H+ +V+ G S V GL+DMY KC L A
Sbjct: 483 VEANHATFNSVIPAYAILADLKQV-MNLHSYLVRSGFISKIAVITGLIDMYSKCGSLDYA 541
Query: 274 ERVFELIVDK-KNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
++F+ I +K K+I W+ ++ GY +G A M SG+Q E + ACS
Sbjct: 542 HKIFDEIPNKEKDIIVWSVLIAGYGMHGHGETAVLLFNQMVHSGMQPNEITFTSVLHACS 601
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 77/294 (26%), Positives = 132/294 (44%), Gaps = 9/294 (3%)
Query: 43 KPTLLFL-NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFA 101
P + L + L + + CG + AR+LFD++ W +I YVD + + + +F
Sbjct: 113 SPNFIHLPSHLAVSYAFCGCVPLARKLFDDLSDPSLFLWNAIIKMYVDKGFHFDALRVFD 172
Query: 102 EMMKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLIN 160
M+ K +P + V+KAC + +G +HG G S N+ + SL+
Sbjct: 173 SMICSGK-----CWPDKYTFPLVIKACSVMSMLNVGVLIHGRALVSGFSSNMFVQNSLLA 227
Query: 161 FYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYT 220
Y + A VF+ + + + V W I + G + F M R++ +S T
Sbjct: 228 MYMNCGKVGLARQVFNVMLKRSVVSWNTMISGWFQNGRPEEALAVFNSMMDARVEPDSAT 287
Query: 221 FSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELI 280
S L +CG + + G ++H + K L+ V+ LVDMY +C + +A VF
Sbjct: 288 IVSALPSCGHLKEL-ELGIKVHKLVQKNHLQEKIEVRNALVDMYSRCGGMDEASLVFAE- 345
Query: 281 VDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
+K++ +W +M+ GYI NG A M+ G+ + L AC+S+
Sbjct: 346 TKEKDVITWTSMINGYIMNGNAKSALALCPAMQLDGVVPNAVTLASLLSACASL 399
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 117/264 (44%), Gaps = 21/264 (7%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R + +L + L+ M+ C + + Q+F + ++ W ++ G + +E +
Sbjct: 414 RKKLDSDVLVVTALIDMYAKCNAVSYSFQVFAKTSMKRTVPWNALLSGLIHNELAREAVG 473
Query: 99 LFAEMM--KRKKGHMLL--VFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISL 154
LF M+ + + H V PA+ I+ LK MN+ H L + G I++
Sbjct: 474 LFKSMLIEEVEANHATFNSVIPAYAILADLKQ---VMNL------HSYLVRSGFISKIAV 524
Query: 155 TGSLINFYGKFRCLEDADFVFSQL--KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRE 212
LI+ Y K L+ A +F ++ K + +VW+ I GH F +M
Sbjct: 525 ITGLIDMYSKCGSLDYAHKIFDEIPNKEKDIIVWSVLIAGYGMHGHGETAVLLFNQMVHS 584
Query: 213 RIKKNSYTFSSVLKAC---GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRL 269
++ N TF+SVL AC G VDD + M N L + + C +VD+ G+
Sbjct: 585 GMQPNEITFTSVLHACSHRGLVDDGLTLFKYMIENYPSSPLPN--HYTC-VVDLLGRAGR 641
Query: 270 LRDAERVFELIVDKKNIASWNAML 293
L +A + + + ++N + W A+L
Sbjct: 642 LDEAYDLIKSMPFQQNHSIWGALL 665
>gi|302804548|ref|XP_002984026.1| hypothetical protein SELMODRAFT_30095 [Selaginella moellendorffii]
gi|300148378|gb|EFJ15038.1| hypothetical protein SELMODRAFT_30095 [Selaginella moellendorffii]
Length = 745
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 79/288 (27%), Positives = 150/288 (52%), Gaps = 14/288 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N ++ M+ C + ARQ+FD + R+ SW++++ YV A YQE + ++ EM++++
Sbjct: 6 NMIIQMYGKCKSPEDARQVFDRIKQRNAFSWSILVECYVQNAMYQEALEVYKEMVRKE-- 63
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ A+ + VL AC +++E G+ V +LG +++ + SLI+ + K CLE
Sbjct: 64 ---ISIDAYTLSSVLAACTKLLDVEEGRMVQRKAEELGFEKDVVVATSLIHLFAKCGCLE 120
Query: 170 DADFVFSQLKRHNTVVW-TAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+A+ VF + ++ TA I R G + + +M + ++ +++T++++L AC
Sbjct: 121 EAESVFRSMGAMRDIISVTAMIGAYVRHGKNDLALDTYWKMRSQGLEPDAFTYAAILGAC 180
Query: 229 GGVD---DDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
D D G+ +H +I++ + V+ L+ MY KC L+D++ +F L +D K+
Sbjct: 181 SSPDFLLD----GKHIHKHILESKHFGNISVRNALITMYAKCGSLKDSKSLF-LTMDVKD 235
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSS 333
+ SWNAM+ Y G +A + M G + + AC+S
Sbjct: 236 VVSWNAMIAAYTLYGHDKDAFSLFHRMCTLGHTPDIYTFSSILGACAS 283
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 128/283 (45%), Gaps = 7/283 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ CG L ++ LF M ++D SW MI Y ++ +LF M G
Sbjct: 209 NALITMYAKCGSLKDSKSLFLTMDVKDVVSWNAMIAAYTLYGHDKDAFSLFHRMCTL--G 266
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
H ++ +L AC +E G+ +H + G R+ ++ +LI+ + + LE
Sbjct: 267 HTPDIY---TFSSILGACASPKRLEDGRMLHVRITARGFDRDFAMQNNLISMFTRCGSLE 323
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A F +++ W + + +K M E + +TFSSV+ +C
Sbjct: 324 SARRYFYSIEKKELGAWNTMLAAYAQFDKGKDALFLYKNMLLEGFTPDRFTFSSVVDSCA 383
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ G+ +H G E D + LV+MY KC L DA++ F+ I +K ++ SW
Sbjct: 384 SLGALRE-GKFIHECSTSCGFEKDVILGTALVNMYAKCGSLADAKKSFDGISNK-DVVSW 441
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+AM+ ++G EA + +LM GI E + + ACS
Sbjct: 442 SAMIAASAQHGHAEEALELSHLMNLQGIAQNEVTASSVLHACS 484
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 108/253 (42%), Gaps = 19/253 (7%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M CG L++AR+ F + ++ +W M+ Y ++ + L+ M+
Sbjct: 310 NNLISMFTRCGSLESARRYFYSIEKKELGAWNTMLAAYAQFDKGKDALFLYKNMLLEGFT 369
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
F + V+ +C + GK +H G +++ L +L+N Y K L
Sbjct: 370 PDRFTFSS-----VVDSCASLGALREGKFIHECSTSCGFEKDVILGTALVNMYAKCGSLA 424
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
DA F + + V W+A I + + GH + M + I +N T SSVL AC
Sbjct: 425 DAKKSFDGISNKDVVSWSAMIAASAQHGHAEEALELSHLMNLQGIAQNEVTASSVLHAC- 483
Query: 230 GVDDDGNCGRQMHANI-------VKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282
+ G +++ I G+E DE G +D+ G+ L++AE V +
Sbjct: 484 ------SHGGRLYEGIDYFMGLSQDFGIERDEENTVGFIDLLGRAGWLKEAEHVLHTMPF 537
Query: 283 KKNIASWNAMLVG 295
K + + +L G
Sbjct: 538 KVSFVALVTLLGG 550
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 89/180 (49%), Gaps = 1/180 (0%)
Query: 154 LTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRER 213
L +I YGK + EDA VF ++K+ N W+ + + + + +KEM R+
Sbjct: 4 LANMIIQMYGKCKSPEDARQVFDRIKQRNAFSWSILVECYVQNAMYQEALEVYKEMVRKE 63
Query: 214 IKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDA 273
I ++YT SSVL AC + D GR + ++G E D V L+ ++ KC L +A
Sbjct: 64 ISIDAYTLSSVLAACTKLLDVEE-GRMVQRKAEELGFEKDVVVATSLIHLFAKCGCLEEA 122
Query: 274 ERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSS 333
E VF + ++I S AM+ Y+R+G A + M++ G++ + ACSS
Sbjct: 123 ESVFRSMGAMRDIISVTAMIGAYVRHGKNDLALDTYWKMRSQGLEPDAFTYAAILGACSS 182
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 253 DEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLM 312
D ++ ++ MYGKC+ DA +VF+ I ++N SW+ ++ Y++N +Y EA + M
Sbjct: 1 DTFLANMIIQMYGKCKSPEDARQVFDRI-KQRNAFSWSILVECYVQNAMYQEALEVYKEM 59
Query: 313 KASGIQIQESLINDLRIACSSI 334
I I ++ + AC+ +
Sbjct: 60 VRKEISIDAYTLSSVLAACTKL 81
>gi|296082479|emb|CBI21484.3| unnamed protein product [Vitis vinifera]
Length = 590
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 93/321 (28%), Positives = 146/321 (45%), Gaps = 40/321 (12%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N +L + G+L+ A ++F+EMP D SW MIVGY + ++ I +F EM+
Sbjct: 83 NIILSGYAKGGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSDD-- 140
Query: 110 HMLLVFPA-WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK---- 164
V P + + VL +C + +G++VH + K G S IS+ SL+N Y K
Sbjct: 141 ----VPPTQFTLTNVLASCAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMYAKSGDP 196
Query: 165 -----------------FRCLED----------ADFVFSQLKRHNTVVWTAKIVNNCREG 197
F L D A +F L+ + V WTA IV + G
Sbjct: 197 VTAKIVFDRMKLKSTSTFTALLDGYVKLGDINPARRIFDSLRVRDVVAWTAMIVGYVQNG 256
Query: 198 HFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQ 257
F+ M +E K N+YT ++ + + + GRQ+HA+ + G S V
Sbjct: 257 FNQDAMELFRSMIKEGPKPNNYTLAT-MLSVSSSLASLDHGRQIHASATRSGNASSVSVS 315
Query: 258 CGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEA-TKFLYLMKASG 316
L+ MY K + DA VF LI K++ +W +M++ ++GL EA T F +++ +
Sbjct: 316 NALITMYAKSGSINDARWVFNLIHWKRDTITWTSMIIALAQHGLGEEALTLFERMLENAH 375
Query: 317 IQIQESLINDLRIACSSISAS 337
I+ I IA S+ AS
Sbjct: 376 AFIENMPIEPDVIAWGSLLAS 396
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 98/242 (40%), Gaps = 62/242 (25%)
Query: 136 GKQVHGLLFKLGSSRNISLTGSLINFYGKFRC---------------------------- 167
GK +H + K G + L +L+NFY K
Sbjct: 32 GKSIHARIIKAGLHLGVFLMNNLMNFYAKTGFIYDAHRVFDEMPVKSVFSWNIILSGYAK 91
Query: 168 ---LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
LE+A VF ++ ++V WTA IV + G F F+EM + + +T ++V
Sbjct: 92 GGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSDDVPPTQFTLTNV 151
Query: 225 LKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKC-----------RLLRDA 273
L +C V+ G GR++H+ +VK GL S V L++MY K R+ +
Sbjct: 152 LASCAAVECLG-IGRKVHSFVVKHGLSSYISVANSLLNMYAKSGDPVTAKIVFDRMKLKS 210
Query: 274 ERVFELIVDK-------------------KNIASWNAMLVGYIRNGLYVEATKFLYLMKA 314
F ++D +++ +W AM+VGY++NG +A + M
Sbjct: 211 TSTFTALLDGYVKLGDINPARRIFDSLRVRDVVAWTAMIVGYVQNGFNQDAMELFRSMIK 270
Query: 315 SG 316
G
Sbjct: 271 EG 272
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 234 DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
D G+ +HA I+K GL ++ L++ Y K + DA RVF+ + K++ SWN +L
Sbjct: 28 DPFTGKSIHARIIKAGLHLGVFLMNNLMNFYAKTGFIYDAHRVFDEM-PVKSVFSWNIIL 86
Query: 294 VGYIRNGLYVEATKFLYLMK 313
GY + G EA + M
Sbjct: 87 SGYAKGGRLEEAHRVFEEMP 106
>gi|115476154|ref|NP_001061673.1| Os08g0375800 [Oryza sativa Japonica Group]
gi|27260973|dbj|BAC45090.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|40253357|dbj|BAD05289.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|113623642|dbj|BAF23587.1| Os08g0375800 [Oryza sativa Japonica Group]
gi|215715200|dbj|BAG94951.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 696
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 81/274 (29%), Positives = 123/274 (44%), Gaps = 12/274 (4%)
Query: 62 LDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIV 121
L AR++FDE+P RD SW ++ + E L M + L + +
Sbjct: 43 LAAARRVFDEVPRRDEVSWNALLAAQAASGAHPEAWRLLRAMHAQG-----LASNTFALG 97
Query: 122 CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH 181
L++ +G Q+ L K G + N+ +L++ Y K + DA VF +
Sbjct: 98 SALRSAAVARRPAIGAQLQSLALKSGLANNVFAASALLDVYAKCGRVRDARQVFDGMPER 157
Query: 182 NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC--GR 239
NTV W A I G F EM RE + + TF+S+L A G +C
Sbjct: 158 NTVSWNALIAGYTESGDMASALELFLEMEREGLAPDEATFASLLTAVEGP----SCFLMH 213
Query: 240 QMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRN 299
Q+H IVK G V + Y +C L+D+ R+F+ I D +++ SWNAML Y N
Sbjct: 214 QLHGKIVKYGSALGLTVLNAAITAYSQCGSLKDSRRIFDGIGDIRDLISWNAMLGAYTHN 273
Query: 300 GLYVEATK-FLYLMKASGIQIQESLINDLRIACS 332
G+ EA K F+ +M+ SG+ + +CS
Sbjct: 274 GMDDEAMKFFVRMMQESGVHPDMYSFTSIISSCS 307
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 76/275 (27%), Positives = 131/275 (47%), Gaps = 12/275 (4%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL ++ CG++ ARQ+FD MP R+ SW +I GY + D + LF EM +
Sbjct: 134 LLDVYAKCGRVRDARQVFDGMPERNTVSWNALIAGYTESGDMASALELFLEMEREGLAPD 193
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
F + + +C L Q+HG + K GS+ +++ + I Y + L+D+
Sbjct: 194 EATFASLLTAVEGPSCF------LMHQLHGKIVKYGSALGLTVLNAAITAYSQCGSLKDS 247
Query: 172 DFVFSQLKR-HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRER-IKKNSYTFSSVLKACG 229
+F + + + W A + G + F M +E + + Y+F+S++ +C
Sbjct: 248 RRIFDGIGDIRDLISWNAMLGAYTHNGMDDEAMKFFVRMMQESGVHPDMYSFTSIISSCS 307
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCR---LLRDAERVFELIVDKKNI 286
D + GR +H ++K LE V L+ MY + ++ DA + F +V K +
Sbjct: 308 EHGHDDHQGRVIHGLVIKSALEGVTPVCNALIAMYTRYNENCMMEDAYKCFNSLVLKDTV 367
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQE 321
SWN+ML GY ++GL +A KF M + ++ E
Sbjct: 368 -SWNSMLTGYSQHGLSADALKFFRCMCSENVRTDE 401
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 70/260 (26%), Positives = 119/260 (45%), Gaps = 11/260 (4%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEM-PLRDFNSWAVMIVGYVDVADYQECITLFAEMM 104
L LN + + CG L +R++FD + +RD SW M+ Y E + F MM
Sbjct: 228 LTVLNAAITAYSQCGSLKDSRRIFDGIGDIRDLISWNAMLGAYTHNGMDDEAMKFFVRMM 287
Query: 105 KRKKGHM-LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYG 163
+ H + F + I C + G+ +HGL+ K + +LI Y
Sbjct: 288 QESGVHPDMYSFTSIISSCSEHG----HDDHQGRVIHGLVIKSALEGVTPVCNALIAMYT 343
Query: 164 KFR---CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYT 220
++ +EDA F+ L +TV W + + + G F+ M E ++ + Y
Sbjct: 344 RYNENCMMEDAYKCFNSLVLKDTVSWNSMLTGYSQHGLSADALKFFRCMCSENVRTDEYA 403
Query: 221 FSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELI 280
FS+ L++ + G+Q+H ++ G S+++V L+ MY K ++ DA + FE
Sbjct: 404 FSAALRSSSELAVL-QLGKQIHGLVIHSGFASNDFVSSSLIFMYSKSGIIDDARKSFEE- 461
Query: 281 VDKKNIASWNAMLVGYIRNG 300
DK + WNAM+ GY ++G
Sbjct: 462 ADKSSSVPWNAMIFGYAQHG 481
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 67/293 (22%), Positives = 126/293 (43%), Gaps = 14/293 (4%)
Query: 8 ITTDMY--TCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQ---L 62
+ DMY T +I C+ +++ + + ++ N L+ M+ + +
Sbjct: 292 VHPDMYSFTSIISSCSEHGHDDHQGRVIHGLVIKSALEGVTPVCNALIAMYTRYNENCMM 351
Query: 63 DTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVC 122
+ A + F+ + L+D SW M+ GY + + F M F A
Sbjct: 352 EDAYKCFNSLVLKDTVSWNSMLTGYSQHGLSADALKFFRCMCSENVRTDEYAFSA----- 406
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
L++ ++LGKQ+HGL+ G + N ++ SLI Y K ++DA F + + +
Sbjct: 407 ALRSSSELAVLQLGKQIHGLVIHSGFASNDFVSSSLIFMYSKSGIIDDARKSFEEADKSS 466
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--GGVDDDGNCGRQ 240
+V W A I + G V F EM + + + TF ++ +C G+ D+G+
Sbjct: 467 SVPWNAMIFGYAQHGQAENVDILFNEMLQRKAPLDHITFVGLITSCSHAGLVDEGSEILN 526
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
+ L + Y CG VD+YG+ L A+++ + + + + W +L
Sbjct: 527 TMETKYGVPLRMEHYA-CG-VDLYGRAGQLDKAKKLIDSMPFEPDAMVWMTLL 577
>gi|357493705|ref|XP_003617141.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355518476|gb|AET00100.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 684
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 91/291 (31%), Positives = 139/291 (47%), Gaps = 23/291 (7%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+ G A +FDEMP R+ +W I V + I F E + +
Sbjct: 152 MYCKTGFRGDACNMFDEMPQRNLATWNAYISNAVQDRRSLDAIVAFKEFLCVHGEPNSIT 211
Query: 115 FPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFV 174
F A+ L ACV + + LG+Q+H + + G ++S+ LI+FYGK + A+ V
Sbjct: 212 FCAF-----LNACVDMVRLNLGRQLHAFIVRCGYKEDVSVANGLIDFYGKCGDIVSAEMV 266
Query: 175 FSQL-KRHNTVVW---TAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC-- 228
F+++ R N V W A +V N E VF R+ ++ + SSVL AC
Sbjct: 267 FNRIGNRKNVVSWCSMLAALVQNHEEERACMVF----LQARKEVEPTDFMISSVLSACAE 322
Query: 229 -GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
GG++ GR +HA VK +E + +V LVDMYGKC + +AE+VF + ++N+
Sbjct: 323 LGGLE----LGRSVHALAVKACVEDNIFVGSALVDMYGKCGSIENAEQVFSEL-PERNLV 377
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRI--ACSSISA 336
+WNAM+ GY G A + M I+ S + + I CS + A
Sbjct: 378 TWNAMIGGYAHQGDIDMALRLFEEMTLGSHGIRPSYVTLISILSVCSRVGA 428
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 89/300 (29%), Positives = 136/300 (45%), Gaps = 10/300 (3%)
Query: 39 RVNIKPTLLFL-NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECI 97
R ++ P FL N L+ M+ L++A+ + LR +W +I G V + +
Sbjct: 34 RTHVTPLPSFLSNHLVNMYSKLDLLNSAQHVLSLTHLRTVVTWTSLISGCVHNRRFLPAL 93
Query: 98 TLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGS 157
F M + FP CV KA GKQ+HGL K G ++ + S
Sbjct: 94 LHFTNMRRDNVQPNDFTFP-----CVFKASAFVQIPMTGKQIHGLALKGGMIYDVFVGCS 148
Query: 158 LINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKN 217
+ Y K DA +F ++ + N W A I N ++ FKE + N
Sbjct: 149 CFDMYCKTGFRGDACNMFDEMPQRNLATWNAYISNAVQDRRSLDAIVAFKEFLCVHGEPN 208
Query: 218 SYTFSSVLKACGGVD-DDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERV 276
S TF + L AC VD N GRQ+HA IV+ G + D V GL+D YGKC + AE V
Sbjct: 209 SITFCAFLNAC--VDMVRLNLGRQLHAFIVRCGYKEDVSVANGLIDFYGKCGDIVSAEMV 266
Query: 277 FELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
F I ++KN+ SW +ML ++N E ++L ++ + +I+ + AC+ +
Sbjct: 267 FNRIGNRKNVVSWCSMLAALVQNH-EEERACMVFLQARKEVEPTDFMISSVLSACAELGG 325
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 73/263 (27%), Positives = 116/263 (44%), Gaps = 19/263 (7%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLR-DFNSWAVMIVGYVDVADYQECI 97
R K + N L+ + CG + +A +F+ + R + SW M+ V + +
Sbjct: 237 RCGYKEDVSVANGLIDFYGKCGDIVSAEMVFNRIGNRKNVVSWCSMLAALVQNHEEERAC 296
Query: 98 TLFAEMMKRKKGHMLLVFPA-WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTG 156
+F + K V P ++I VL AC +ELG+ VH L K NI +
Sbjct: 297 MVFLQARKE-------VEPTDFMISSVLSACAELGGLELGRSVHALAVKACVEDNIFVGS 349
Query: 157 SLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEM--GRERI 214
+L++ YGK +E+A+ VFS+L N V W A I +G F+EM G I
Sbjct: 350 ALVDMYGKCGSIENAEQVFSELPERNLVTWNAMIGGYAHQGDIDMALRLFEEMTLGSHGI 409
Query: 215 KKNSYTFSSVLKAC---GGVDDDGNCGRQMHANIVKIGLESD-EYVQCGLVDMYGKCRLL 270
+ + T S+L C G V+ M N G+E E+ C +VD+ G+ L+
Sbjct: 410 RPSYVTLISILSVCSRVGAVERGIQIFESMRLN---YGIEPGAEHFAC-VVDLLGRSGLV 465
Query: 271 RDAERVFELIVDKKNIASWNAML 293
A + + + I+ W A+L
Sbjct: 466 DRAYEFIQNMAIQPTISVWGALL 488
>gi|357464703|ref|XP_003602633.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491681|gb|AES72884.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 647
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 87/286 (30%), Positives = 136/286 (47%), Gaps = 40/286 (13%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N LL + G + A +LFDEMP R+ S+ +I G ++E + F EM G
Sbjct: 148 NTLLSFYSKKGVFNQAYKLFDEMPQRNLVSYNSLISGLTRHEFHKEAVKFFREMQNGVGG 207
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK----- 164
ML F +V ++ C C ++ +QVHG+ +G N+ L +LI+ YGK
Sbjct: 208 LMLDEF---TLVSLVSNCSCLDTVKWLRQVHGVATIVGFRTNLILNNALIDAYGKCGEPN 264
Query: 165 -----FRCL---------------------EDADFVFSQLKRHNTVVWTAKIVNNCREGH 198
FR + +DA VF+++ TV W A I + G
Sbjct: 265 SSFCLFRSMVEKDAVSWTSMVVTYTRASRIDDACKVFNEMPVKYTVSWAALISGFVKNGR 324
Query: 199 FHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDE---- 254
++ F +M +E + + TF SVL AC G G+Q+H I++ G SD
Sbjct: 325 CYEALEVFHQMIKEGVLPRAQTFVSVLDACASEALIGR-GKQVHCQIIR-GRSSDNLFNV 382
Query: 255 YVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
YV L+DMY KC ++ AE +FE+++ K++ SWN ++ G+ +NG
Sbjct: 383 YVFNALMDMYAKCGDMKSAENLFEMMIHVKDVVSWNTLITGFAQNG 428
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 72/265 (27%), Positives = 116/265 (43%), Gaps = 41/265 (15%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
+++ + ++D A ++F+EMP++ SWA +I G+V E + +F +M+K
Sbjct: 284 MVVTYTRASRIDDACKVFNEMPVKYTVSWAALISGFVKNGRCYEALEVFHQMIKEG---- 339
Query: 112 LLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSR---NISLTGSLINFYGKFRC 167
V P A V VL AC + GKQVH + + SS N+ + +L++ Y K
Sbjct: 340 --VLPRAQTFVSVLDACASEALIGRGKQVHCQIIRGRSSDNLFNVYVFNALMDMYAKCGD 397
Query: 168 LEDADFVFSQLKRHNTVV-WTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
++ A+ +F + VV W I + G F M I+ N TF VL
Sbjct: 398 MKSAENLFEMMIHVKDVVSWNTLITGFAQNGRGEDSLAVFDRMIESNIEPNHVTFLGVLS 457
Query: 227 ACGGVDDDGNCGRQMHANIVKIGLE--------------SDEYVQCGLVDMYGKCRLLRD 272
AC HA +V GLE S+ Y L+D+ G+ L +
Sbjct: 458 ACN------------HAGLVNAGLELLDSMERRYGVKPKSNHYAL--LIDLLGRKNRLEE 503
Query: 273 AERVFELIVDK--KNIASWNAMLVG 295
A + E + ++ +IA W A+L G
Sbjct: 504 AMCLIEKVPNEISNHIAMWGAVLGG 528
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 80/208 (38%), Gaps = 33/208 (15%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
++ CV +++ GK +H L K L LI+ Y K C E F L
Sbjct: 84 LISNCVSAKSLKHGKALHSQLIKTALFFETFLANGLIDLYSKCGCKESIHKAFDDLPNKT 143
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMG-RERIKKNSYT---------------FSSVLK 226
T W + ++G F+Q + F EM R + NS F +
Sbjct: 144 TRTWNTLLSFYSKKGVFNQAYKLFDEMPQRNLVSYNSLISGLTRHEFHKEAVKFFREMQN 203
Query: 227 ACGGVDDD--------GNCG--------RQMHANIVKIGLESDEYVQCGLVDMYGKCRLL 270
GG+ D NC RQ+H +G ++ + L+D YGKC
Sbjct: 204 GVGGLMLDEFTLVSLVSNCSCLDTVKWLRQVHGVATIVGFRTNLILNNALIDAYGKCGEP 263
Query: 271 RDAERVFELIVDKKNIASWNAMLVGYIR 298
+ +F +V+K + SW +M+V Y R
Sbjct: 264 NSSFCLFRSMVEKDAV-SWTSMVVTYTR 290
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 53/107 (49%), Gaps = 2/107 (1%)
Query: 221 FSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELI 280
FSS++ C + G+ +H+ ++K L + ++ GL+D+Y KC + F+ +
Sbjct: 81 FSSLISNCVSAKSLKH-GKALHSQLIKTALFFETFLANGLIDLYSKCGCKESIHKAFDDL 139
Query: 281 VDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDL 327
+K +WN +L Y + G++ +A K M + SLI+ L
Sbjct: 140 PNK-TTRTWNTLLSFYSKKGVFNQAYKLFDEMPQRNLVSYNSLISGL 185
>gi|15221304|ref|NP_177599.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169837|sp|Q9CA56.1|PP121_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g74600, chloroplastic; Flags: Precursor
gi|12324789|gb|AAG52351.1|AC011765_3 hypothetical protein; 84160-81473 [Arabidopsis thaliana]
gi|332197493|gb|AEE35614.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 895
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 79/283 (27%), Positives = 135/283 (47%), Gaps = 7/283 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+ L ++ CG L+ + +LF +P +D WA MI G+ + +E I LF+EM+
Sbjct: 489 SSLFTLYSKCGSLEESYKLFQGIPFKDNACWASMISGFNEYGYLREAIGLFSEMLDDGTS 548
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ VL C ++ GK++HG + G + + L +L+N Y K L+
Sbjct: 549 P-----DESTLAAVLTVCSSHPSLPRGKEIHGYTLRAGIDKGMDLGSALVNMYSKCGSLK 603
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A V+ +L + V ++ I + G F F++M +S+ SS+LKA
Sbjct: 604 LARQVYDRLPELDPVSCSSLISGYSQHGLIQDGFLLFRDMVMSGFTMDSFAISSILKA-A 662
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ D+ + G Q+HA I KIGL ++ V L+ MY K + D + F I + ++ +W
Sbjct: 663 ALSDESSLGAQVHAYITKIGLCTEPSVGSSLLTMYSKFGSIDDCCKAFSQI-NGPDLIAW 721
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
A++ Y ++G EA + LMK G + + + ACS
Sbjct: 722 TALIASYAQHGKANEALQVYNLMKEKGFKPDKVTFVGVLSACS 764
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 87/306 (28%), Positives = 136/306 (44%), Gaps = 12/306 (3%)
Query: 32 LLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVA 91
L H+ +R + + LL + + G + A +LFD +P D S +MI GY
Sbjct: 70 LQAHLLRRYLLPFDVFLTKSLLSWYSNSGSMADAAKLFDTIPQPDVVSCNIMISGYKQHR 129
Query: 92 DYQECITLFAEMMKRKKGHMLLVFPAWIIV--CVLKACVCTMNMELGKQVHGLLFKLGSS 149
++E + F++M L F A I V+ AC + V K+G
Sbjct: 130 LFEESLRFFSKMH-------FLGFEANEISYGSVISACSALQAPLFSELVCCHTIKMGYF 182
Query: 150 RNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEM 209
+ +LI+ + K EDA VF N W I R ++ VF+ F EM
Sbjct: 183 FYEVVESALIDVFSKNLRFEDAYKVFRDSLSANVYCWNTIIAGALRNQNYGAVFDLFHEM 242
Query: 210 GRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRL 269
K +SYT+SSVL AC ++ G+ + A ++K G E D +V +VD+Y KC
Sbjct: 243 CVGFQKPDSYTYSSVLAACASLEKL-RFGKVVQARVIKCGAE-DVFVCTAIVDLYAKCGH 300
Query: 270 LRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRI 329
+ +A VF I + ++ SW ML GY ++ A + M+ SG++I + +
Sbjct: 301 MAEAMEVFSRIPN-PSVVSWTVMLSGYTKSNDAFSALEIFKEMRHSGVEINNCTVTSVIS 359
Query: 330 ACSSIS 335
AC S
Sbjct: 360 ACGRPS 365
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 69/259 (26%), Positives = 116/259 (44%), Gaps = 9/259 (3%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R I + + L+ M+ CG L ARQ++D +P D S + +I GY Q+
Sbjct: 579 RAGIDKGMDLGSALVNMYSKCGSLKLARQVYDRLPELDPVSCSSLISGYSQHGLIQDGFL 638
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
LF +M+ ++ I +LKA + LG QVH + K+G S+ SL
Sbjct: 639 LFRDMVMSG-----FTMDSFAISSILKAAALSDESSLGAQVHAYITKIGLCTEPSVGSSL 693
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
+ Y KF ++D FSQ+ + + WTA I + + G ++ + M + K +
Sbjct: 694 LTMYSKFGSIDDCCKAFSQINGPDLIAWTALIASYAQHGKANEALQVYNLMKEKGFKPDK 753
Query: 219 YTFSSVLKAC--GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERV 276
TF VL AC GG+ ++ +++ + G+E + +VD G+ LR+AE
Sbjct: 754 VTFVGVLSACSHGGLVEESYF--HLNSMVKDYGIEPENRHYVCMVDALGRSGRLREAESF 811
Query: 277 FELIVDKKNIASWNAMLVG 295
+ K + W +L
Sbjct: 812 INNMHIKPDALVWGTLLAA 830
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/282 (24%), Positives = 129/282 (45%), Gaps = 11/282 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMP-LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGH 110
L+ M+ G +D + Q+F+++ ++ N VMI + + I LF M++ +G
Sbjct: 392 LISMYSKSGDIDLSEQVFEDLDDIQRQNIVNVMITSFSQSKKPGKAIRLFTRMLQ--EGL 449
Query: 111 MLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
F VC L + + +N LGKQVHG K G ++++ SL Y K LE+
Sbjct: 450 RTDEFS----VCSLLSVLDCLN--LGKQVHGYTLKSGLVLDLTVGSSLFTLYSKCGSLEE 503
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
+ +F + + W + I G+ + F EM + + T ++VL C
Sbjct: 504 SYKLFQGIPFKDNACWASMISGFNEYGYLREAIGLFSEMLDDGTSPDESTLAAVLTVCSS 563
Query: 231 VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWN 290
G+++H ++ G++ + LV+MY KC L+ A +V++ + + + S +
Sbjct: 564 HPSLPR-GKEIHGYTLRAGIDKGMDLGSALVNMYSKCGSLKLARQVYDRLPELDPV-SCS 621
Query: 291 AMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+++ GY ++GL + M SG + I+ + A +
Sbjct: 622 SLISGYSQHGLIQDGFLLFRDMVMSGFTMDSFAISSILKAAA 663
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/265 (24%), Positives = 117/265 (44%), Gaps = 15/265 (5%)
Query: 61 QLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEM-MKRKKGHMLLVFPAWI 119
+ + A ++F + + W +I G + +Y LF EM + +K ++
Sbjct: 200 RFEDAYKVFRDSLSANVYCWNTIIAGALRNQNYGAVFDLFHEMCVGFQKPD------SYT 253
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
VL AC + GK V + K G+ ++ + ++++ Y K + +A VFS++
Sbjct: 254 YSSVLAACASLEKLRFGKVVQARVIKCGA-EDVFVCTAIVDLYAKCGHMAEAMEVFSRIP 312
Query: 180 RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC-G 238
+ V WT + + FKEM ++ N+ T +SV+ ACG C
Sbjct: 313 NPSVVSWTVMLSGYTKSNDAFSALEIFKEMRHSGVEINNCTVTSVISACG--RPSMVCEA 370
Query: 239 RQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD--KKNIASWNAMLVGY 296
Q+HA + K G D V L+ MY K + +E+VFE + D ++NI N M+ +
Sbjct: 371 SQVHAWVFKSGFYLDSSVAAALISMYSKSGDIDLSEQVFEDLDDIQRQNIV--NVMITSF 428
Query: 297 IRNGLYVEATKFLYLMKASGIQIQE 321
++ +A + M G++ E
Sbjct: 429 SQSKKPGKAIRLFTRMLQEGLRTDE 453
>gi|413918610|gb|AFW58542.1| hypothetical protein ZEAMMB73_242801 [Zea mays]
Length = 941
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 87/289 (30%), Positives = 136/289 (47%), Gaps = 9/289 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+L+ M+ CG++D AR+LF+ MP R SW ++ Y+ E + ++ M R
Sbjct: 99 TKLVFMYGRCGRVDDARRLFNGMPARTVFSWNALVGAYLSSGSAGEAMRVYGAM--RASA 156
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ VLKAC + G +VHGL K+G ++ + +LI Y K L+
Sbjct: 157 APGSAPDGCTLASVLKACGAEGDGRCGGEVHGLAVKVGLDKSTLVANALIGMYAKCGLLD 216
Query: 170 DADFVFSQLKR--HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
A VF L++ + W + + + G + F+ M NSYT +VL+
Sbjct: 217 SALRVFEWLQQDARDVASWNSVVSGCVQNGRTLEALALFRGMQSAGFPMNSYTSVAVLQV 276
Query: 228 CGGVDDDGNCGRQMHANIVKIGLESDEYVQC-GLVDMYGKCRLLRDAERVFELIVDKKNI 286
C + + GR++HA ++K G E + +QC L+ MY K + A RVF I +K I
Sbjct: 277 CAELGLL-SLGRELHAALLKCGSELN--IQCNALLVMYAKYGRVDSALRVFGQIAEKDYI 333
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
SWN+ML Y++N Y EA F M G Q + + L A +S
Sbjct: 334 -SWNSMLSCYVQNSFYAEAIDFFGEMLQHGFQPDHACVVSLSSALGHLS 381
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 82/325 (25%), Positives = 151/325 (46%), Gaps = 15/325 (4%)
Query: 16 LIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFD--EMP 73
++K C + D E+ + + +V + + L N L+ M+ CG LD+A ++F+ +
Sbjct: 170 VLKACGAEGDGRCGGEV-HGLAVKVGLDKSTLVANALIGMYAKCGLLDSALRVFEWLQQD 228
Query: 74 LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP--AWIIVCVLKACVCTM 131
RD SW ++ G V E + LF +G FP ++ V VL+ C
Sbjct: 229 ARDVASWNSVVSGCVQNGRTLEALALF-------RGMQSAGFPMNSYTSVAVLQVCAELG 281
Query: 132 NMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIV 191
+ LG+++H L K GS NI L+ Y K+ ++ A VF Q+ + + W + +
Sbjct: 282 LLSLGRELHAALLKCGSELNIQCNALLV-MYAKYGRVDSALRVFGQIAEKDYISWNSMLS 340
Query: 192 NNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLE 251
+ + + + F EM + + + S+ A G + N GR+ HA +K L
Sbjct: 341 CYVQNSFYAEAIDFFGEMLQHGFQPDHACVVSLSSALGHLSRLNN-GREFHAYAIKQRLH 399
Query: 252 SDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYL 311
+D V L+DMY KC + + +VFE + + +I SW +L + ++ + EA + +
Sbjct: 400 TDLQVGNTLMDMYIKCGSIECSAKVFESMGIRDHI-SWTTILACFAQSSRHSEALEMILE 458
Query: 312 MKASGIQIQESLINDLRIACSSISA 336
++ GI + +I + C + +
Sbjct: 459 LQKEGIMVDSMMIGSILETCCGLKS 483
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 97/191 (50%), Gaps = 8/191 (4%)
Query: 136 GKQVHGLLFKLGS---SRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKI-- 190
G+QVH GS + L L+ YG+ ++DA +F+ + W A +
Sbjct: 76 GRQVHAHAVTTGSLNEDDDGFLATKLVFMYGRCGRVDDARRLFNGMPARTVFSWNALVGA 135
Query: 191 -VNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIG 249
+++ G +V+ + + T +SVLKACG + DG CG ++H VK+G
Sbjct: 136 YLSSGSAGEAMRVYGAMRASAAPGSAPDGCTLASVLKACG-AEGDGRCGGEVHGLAVKVG 194
Query: 250 LESDEYVQCGLVDMYGKCRLLRDAERVFE-LIVDKKNIASWNAMLVGYIRNGLYVEATKF 308
L+ V L+ MY KC LL A RVFE L D +++ASWN+++ G ++NG +EA
Sbjct: 195 LDKSTLVANALIGMYAKCGLLDSALRVFEWLQQDARDVASWNSVVSGCVQNGRTLEALAL 254
Query: 309 LYLMKASGIQI 319
M+++G +
Sbjct: 255 FRGMQSAGFPM 265
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/288 (23%), Positives = 135/288 (46%), Gaps = 10/288 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N LL+M+ G++D+A ++F ++ +D+ SW M+ YV + Y E I F EM++
Sbjct: 305 NALLVMYAKYGRVDSALRVFGQIAEKDYISWNSMLSCYVQNSFYAEAIDFFGEMLQHG-- 362
Query: 110 HMLLVFPAWIIVCVLKACVCTMN-MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
P V L + + ++ + G++ H K ++ + +L++ Y K +
Sbjct: 363 ----FQPDHACVVSLSSALGHLSRLNNGREFHAYAIKQRLHTDLQVGNTLMDMYIKCGSI 418
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
E + VF + + + WT + + + E+ +E I +S S+L+ C
Sbjct: 419 ECSAKVFESMGIRDHISWTTILACFAQSSRHSEALEMILELQKEGIMVDSMMIGSILETC 478
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
G+ + +Q+H ++ GL D ++ L+D+YG+C + +F+ V+KK+I S
Sbjct: 479 CGLKSI-SLLKQVHCYAIRNGL-LDLILENRLIDIYGECGEFDHSLNLFQR-VEKKDIVS 535
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
W +M+ NG A M+ + IQ + + +A + +S+
Sbjct: 536 WTSMINCCTNNGRLNGAVFLFTEMQKANIQPDSVALVSILVAIAGLSS 583
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 109/254 (42%), Gaps = 17/254 (6%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L+ NRL+ ++ CG+ D + LF + +D SW MI + + LF EM K
Sbjct: 502 LILENRLIDIYGECGEFDHSLNLFQRVEKKDIVSWTSMINCCTNNGRLNGAVFLFTEMQK 561
Query: 106 RKKGHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTG----SLIN 160
+ P + +V +L A ++ GKQVHG L + RN + G SL++
Sbjct: 562 AN------IQPDSVALVSILVAIAGLSSLTKGKQVHGFLIR----RNFPIEGPVVSSLVD 611
Query: 161 FYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYT 220
Y + A VF + K + V+WTA I GH Q + FK M + + + +
Sbjct: 612 MYSGCGSMNYAIRVFERAKCKDVVLWTAMINATGMHGHGKQAIDLFKRMLQTGLTPDHVS 671
Query: 221 FSSVLKACGGVDDDGNCGRQMHANIVKIGLES-DEYVQCGLVDMYGKCRLLRDAERVFEL 279
F ++L AC + + K L+ E+ C +VD+ G+ +A +
Sbjct: 672 FLALLYACSHSKLVEEGKHYLDIMVSKYRLKPWQEHYAC-VVDILGRSGQTEEAYEFIKT 730
Query: 280 IVDKKNIASWNAML 293
+ A W A+L
Sbjct: 731 MPMDPKSAVWCALL 744
>gi|224096620|ref|XP_002310674.1| predicted protein [Populus trichocarpa]
gi|222853577|gb|EEE91124.1| predicted protein [Populus trichocarpa]
Length = 908
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 84/274 (30%), Positives = 137/274 (50%), Gaps = 7/274 (2%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
+V + + L+ ++ + G A ++F EM ++ SW ++V YVD + +
Sbjct: 58 KVGLLSDVFVGTSLVHLYGNYGLAADAMKVFQEMIYKNVVSWTALMVAYVDYGEPSMVMN 117
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
++ M R +G + + V+ CV N LG QV G + K G N+S+ SL
Sbjct: 118 IYRRM--RSEG---MSCNDNTMSSVISTCVSLENELLGYQVLGHVIKYGLETNVSVANSL 172
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
I+ +G F +E+A +VFS + H+T+ W + I R G + F M R + NS
Sbjct: 173 ISMFGYFGSVEEACYVFSGMDEHDTISWNSMIAAYIRNGLCKESLRCFSWMFRVHKEINS 232
Query: 219 YTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE 278
T S++L CG VD+ GR +H+ ++K G S+ L+ MY DAE VF+
Sbjct: 233 TTLSTMLAGCGSVDNL-KWGRGIHSLVLKFGWNSNVCASNTLITMYSDAGRCEDAELVFQ 291
Query: 279 LIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLM 312
+V+K I SWN+M+ Y ++G ++A K L M
Sbjct: 292 GMVEKDMI-SWNSMMACYAQDGNCLDALKLLATM 324
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 81/272 (29%), Positives = 128/272 (47%), Gaps = 6/272 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ G+ + A +F M +D SW M+ Y + + + L A M ++G
Sbjct: 271 NTLITMYSDAGRCEDAELVFQGMVEKDMISWNSMMACYAQDGNCLDALKLLATMFYMRRG 330
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ F + L AC GK +H L+ +G N+ + +L+ Y K +
Sbjct: 331 ANYVTFTS-----ALAACSDPEFATEGKILHALVIHVGLHENVIVGNALVTLYAKSGLMI 385
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
+A VF + + + V W A I + + FK M E + N T S+VL AC
Sbjct: 386 EAKKVFQTMPKRDGVTWNALIGGHADSEEPDEALKAFKLMREEGVPINYITISNVLGACL 445
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+D G +HA I+ G +SDEYVQ L+ MY KC L + +F+ + KN ++W
Sbjct: 446 APNDLLEHGMPIHAFIILTGFQSDEYVQNSLITMYAKCGDLNSSNNIFDRLT-SKNASAW 504
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQE 321
NAM+ +G EA KFL M+ +G+ + E
Sbjct: 505 NAMMAANAHHGHMEEALKFLLEMRRAGVNVDE 536
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 79/318 (24%), Positives = 147/318 (46%), Gaps = 8/318 (2%)
Query: 14 TCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMP 73
+ +I C ++ +++L H+ K ++ + N L+ M G ++ A +F M
Sbjct: 135 SSVISTCVSLENELLGYQVLGHVIK-YGLETNVSVANSLISMFGYFGSVEEACYVFSGMD 193
Query: 74 LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNM 133
D SW MI Y+ +E + F+ M + K + + +L C N+
Sbjct: 194 EHDTISWNSMIAAYIRNGLCKESLRCFSWMFRVHK-----EINSTTLSTMLAGCGSVDNL 248
Query: 134 ELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNN 193
+ G+ +H L+ K G + N+ + +LI Y EDA+ VF + + + W + +
Sbjct: 249 KWGRGIHSLVLKFGWNSNVCASNTLITMYSDAGRCEDAELVFQGMVEKDMISWNSMMACY 308
Query: 194 CREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESD 253
++G+ M R N TF+S L AC + G+ +HA ++ +GL +
Sbjct: 309 AQDGNCLDALKLLATMFYMRRGANYVTFTSALAACSD-PEFATEGKILHALVIHVGLHEN 367
Query: 254 EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMK 313
V LV +Y K L+ +A++VF+ + K++ +WNA++ G+ + EA K LM+
Sbjct: 368 VIVGNALVTLYAKSGLMIEAKKVFQ-TMPKRDGVTWNALIGGHADSEEPDEALKAFKLMR 426
Query: 314 ASGIQIQESLINDLRIAC 331
G+ I I+++ AC
Sbjct: 427 EEGVPINYITISNVLGAC 444
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 78/251 (31%), Positives = 126/251 (50%), Gaps = 10/251 (3%)
Query: 86 GYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVL-KACVCTMNMEL-GKQVHGLL 143
G+V Y+E + F EM R G V P+ I V L AC + M + G QVHG +
Sbjct: 3 GFVRAGSYRESMRFFNEM--RDFG----VKPSGIAVASLVTACERSEWMLIEGVQVHGFI 56
Query: 144 FKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVF 203
K+G ++ + SL++ YG + DA VF ++ N V WTA +V G V
Sbjct: 57 VKVGLLSDVFVGTSLVHLYGNYGLAADAMKVFQEMIYKNVVSWTALMVAYVDYGEPSMVM 116
Query: 204 NDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDM 263
N ++ M E + N T SSV+ C ++++ G Q+ +++K GLE++ V L+ M
Sbjct: 117 NIYRRMRSEGMSCNDNTMSSVISTCVSLENE-LLGYQVLGHVIKYGLETNVSVANSLISM 175
Query: 264 YGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESL 323
+G + +A VF + D+ + SWN+M+ YIRNGL E+ + M +I +
Sbjct: 176 FGYFGSVEEACYVFSGM-DEHDTISWNSMIAAYIRNGLCKESLRCFSWMFRVHKEINSTT 234
Query: 324 INDLRIACSSI 334
++ + C S+
Sbjct: 235 LSTMLAGCGSV 245
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 81/321 (25%), Positives = 147/321 (45%), Gaps = 9/321 (2%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
+T + C+ + A ++L+ + V + ++ N L+ ++ G + A+++F M
Sbjct: 336 FTSALAACS-DPEFATEGKILHALVIHVGLHENVIVGNALVTLYAKSGLMIEAKKVFQTM 394
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN 132
P RD +W +I G+ D + E + F M R++G + I VL AC+ +
Sbjct: 395 PKRDGVTWNALIGGHADSEEPDEALKAFKLM--REEG---VPINYITISNVLGACLAPND 449
Query: 133 M-ELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIV 191
+ E G +H + G + + SLI Y K L ++ +F +L N W A +
Sbjct: 450 LLEHGMPIHAFIILTGFQSDEYVQNSLITMYAKCGDLNSSNNIFDRLTSKNASAWNAMMA 509
Query: 192 NNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLE 251
N GH + EM R + + ++FS L A + G+Q+H VK+G +
Sbjct: 510 ANAHHGHMEEALKFLLEMRRAGVNVDEFSFSECLAAAAKLAILEE-GQQLHGLAVKLGCD 568
Query: 252 SDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYL 311
S+ +V +DMYGKC + D R+ +++ + SWN + + R+G + +A + +
Sbjct: 569 SNPFVASATMDMYGKCGEIDDVLRIIPRPINRSRL-SWNILTSSFSRHGFFEKAKETFHE 627
Query: 312 MKASGIQIQESLINDLRIACS 332
M G++ L ACS
Sbjct: 628 MINLGVKPDHVTFVSLLSACS 648
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 87/188 (46%), Gaps = 7/188 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ CG L+++ +FD + ++ ++W M+ +E + EM R+ G
Sbjct: 474 NSLITMYAKCGDLNSSNNIFDRLTSKNASAWNAMMAANAHHGHMEEALKFLLEM--RRAG 531
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ F C+ A +E G+Q+HGL KLG N + + ++ YGK ++
Sbjct: 532 VNVDEFS--FSECLAAAAK-LAILEEGQQLHGLAVKLGCDSNPFVASATMDMYGKCGEID 588
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC- 228
D + + + + W + R G F + F EM +K + TF S+L AC
Sbjct: 589 DVLRIIPRPINRSRLSWNILTSSFSRHGFFEKAKETFHEMINLGVKPDHVTFVSLLSACS 648
Query: 229 -GGVDDDG 235
GG+ ++G
Sbjct: 649 HGGMVEEG 656
>gi|15240583|ref|NP_196827.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75181132|sp|Q9LYV3.1|PP377_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g13230, mitochondrial; Flags: Precursor
gi|7529278|emb|CAB86630.1| putative protein [Arabidopsis thaliana]
gi|332004486|gb|AED91869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 822
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 79/262 (30%), Positives = 130/262 (49%), Gaps = 7/262 (2%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL ++ G + A ++F+EMP D W+ MI + E + LF M +
Sbjct: 288 LLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNEAVDLFIRMRE-----A 342
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+V + + +L C LG+Q+HGL+ K+G +I ++ +LI+ Y K ++ A
Sbjct: 343 FVVPNEFTLSSILNGCAIGKCSGLGEQLHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTA 402
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
+F++L N V W IV G + F+ F+E R ++ TFSS L AC +
Sbjct: 403 VKLFAELSSKNEVSWNTVIVGYENLGEGGKAFSMFREALRNQVSVTEVTFSSALGACASL 462
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
+ G Q+H +K V L+DMY KC ++ A+ VF + + ++ASWNA
Sbjct: 463 -ASMDLGVQVHGLAIKTNNAKKVAVSNSLIDMYAKCGDIKFAQSVFNEM-ETIDVASWNA 520
Query: 292 MLVGYIRNGLYVEATKFLYLMK 313
++ GY +GL +A + L +MK
Sbjct: 521 LISGYSTHGLGRQALRILDIMK 542
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/290 (26%), Positives = 136/290 (46%), Gaps = 19/290 (6%)
Query: 8 ITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQ 67
+++ + C I +C+ G E L+ + +V + N L+ ++ C ++DTA +
Sbjct: 351 LSSILNGCAIGKCS------GLGEQLHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTAVK 404
Query: 68 LFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKAC 127
LF E+ ++ SW +IVGY ++ + + ++F E ++ + + F + L AC
Sbjct: 405 LFAELSSKNEVSWNTVIVGYENLGEGGKAFSMFREALRNQVSVTEVTFSS-----ALGAC 459
Query: 128 VCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWT 187
+M+LG QVHGL K +++ ++++ SLI+ Y K ++ A VF++++ + W
Sbjct: 460 ASLASMDLGVQVHGLAIKTNNAKKVAVSNSLIDMYAKCGDIKFAQSVFNEMETIDVASWN 519
Query: 188 AKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC---GGVDDDGNCGRQMHAN 244
A I G Q M K N TF VL C G +D C M
Sbjct: 520 ALISGYSTHGLGRQALRILDIMKDRDCKPNGLTFLGVLSGCSNAGLIDQGQECFESM--- 576
Query: 245 IVKIGLES-DEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
I G+E E+ C +V + G+ L A ++ E I + ++ W AML
Sbjct: 577 IRDHGIEPCLEHYTC-MVRLLGRSGQLDKAMKLIEGIPYEPSVMIWRAML 625
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 82/331 (24%), Positives = 141/331 (42%), Gaps = 12/331 (3%)
Query: 2 DNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQ 61
D++ + + Y +++ C + D A + I K+ + L N LL +V G
Sbjct: 41 DSIIPGLDSHAYGAMLRRCIQKNDPISAKAIHCDILKKGSCL-DLFATNILLNAYVKAGF 99
Query: 62 LDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIV 121
A LFDEMP R+ S+ + GY Q+ I L++ + ++GH L +
Sbjct: 100 DKDALNLFDEMPERNNVSFVTLAQGYA----CQDPIGLYSRL--HREGHEL---NPHVFT 150
Query: 122 CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH 181
LK V E+ +H + KLG N + +LIN Y ++ A VF +
Sbjct: 151 SFLKLFVSLDKAEICPWLHSPIVKLGYDSNAFVGAALINAYSVCGSVDSARTVFEGILCK 210
Query: 182 NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQM 241
+ VVW + G+F M N+YTF + LKA G+ + + +
Sbjct: 211 DIVVWAGIVSCYVENGYFEDSLKLLSCMRMAGFMPNNYTFDTALKASIGL-GAFDFAKGV 269
Query: 242 HANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGL 301
H I+K D V GL+ +Y + + DA +VF + K ++ W+ M+ + +NG
Sbjct: 270 HGQILKTCYVLDPRVGVGLLQLYTQLGDMSDAFKVFNEM-PKNDVVPWSFMIARFCQNGF 328
Query: 302 YVEATKFLYLMKASGIQIQESLINDLRIACS 332
EA M+ + + E ++ + C+
Sbjct: 329 CNEAVDLFIRMREAFVVPNEFTLSSILNGCA 359
>gi|356575510|ref|XP_003555883.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g04780-like [Glycine max]
Length = 618
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 79/282 (28%), Positives = 137/282 (48%), Gaps = 14/282 (4%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R+ ++ +L N L+ M+ C +D+AR+ F+EMP++ SW +I A+ +E +
Sbjct: 71 RIGLEMDILTSNMLINMYSKCSLVDSARKKFNEMPVKSLVSWNTVIGALTQNAEDREALK 130
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
L +M + F + I VL C + Q+H K N + +L
Sbjct: 131 LLIQMQREGTP-----FNEFTISSVLCNCAFKCAILECMQLHAFSIKAAIDSNCFVGTAL 185
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQ----VFNDFKEMGRERI 214
++ Y K ++DA +F + N V W++ + + G FH+ +F + + MG
Sbjct: 186 LHVYAKCSSIKDASQMFESMPEKNAVTWSSMMAGYVQNG-FHEEALLIFRNAQLMG---F 241
Query: 215 KKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAE 274
++ + SS + AC G+ G+Q+HA K G S+ YV L+DMY KC +R+A
Sbjct: 242 DQDPFMISSAVSACAGLATLIE-GKQVHAISHKSGFGSNIYVSSSLIDMYAKCGCIREAY 300
Query: 275 RVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASG 316
VF+ +++ ++I WNAM+ G+ R+ EA M+ G
Sbjct: 301 LVFQGVLEVRSIVLWNAMISGFARHARAPEAMILFEKMQQRG 342
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 102/213 (47%), Gaps = 2/213 (0%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
+L+ C T + G+ H + ++G +I + LIN Y K ++ A F+++ +
Sbjct: 49 LLQLCAKTRSSMGGRACHAQIIRIGLEMDILTSNMLINMYSKCSLVDSARKKFNEMPVKS 108
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
V W I + + +M RE N +T SSVL C C Q+H
Sbjct: 109 LVSWNTVIGALTQNAEDREALKLLIQMQREGTPFNEFTISSVLCNCAFKCAILEC-MQLH 167
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
A +K ++S+ +V L+ +Y KC ++DA ++FE + +K N +W++M+ GY++NG +
Sbjct: 168 AFSIKAAIDSNCFVGTALLHVYAKCSSIKDASQMFESMPEK-NAVTWSSMMAGYVQNGFH 226
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
EA + G +I+ AC+ ++
Sbjct: 227 EEALLIFRNAQLMGFDQDPFMISSAVSACAGLA 259
>gi|347954472|gb|AEP33736.1| chlororespiratory reduction 21, partial [Raphanus sativus]
Length = 806
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 110/199 (55%), Gaps = 5/199 (2%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGS--SRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
+L+ CV + G+Q+H + K G ++N + L+ FY K E A+ +FS+L+
Sbjct: 50 ILQGCVYERDFHTGRQIHARILKNGEFYAKNEYIETKLVIFYAKCDAHEIAETLFSKLRV 109
Query: 181 HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQ 240
N W A I CR G F EM ++ I +++ +V KACG + G GR
Sbjct: 110 RNVFSWAAIIGVKCRVGLAEGALMGFVEMLKDEIFPDNFVVPNVCKACGALQWSG-FGRG 168
Query: 241 MHANIVKIGLESD-EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRN 299
+H + K GL D +V L DMYGKC +L DA +VF+ I ++N+ +WNA++VGY++N
Sbjct: 169 IHGYVAKSGLYGDCVFVASSLADMYGKCGVLDDARKVFDEI-PERNVVAWNALMVGYVQN 227
Query: 300 GLYVEATKFLYLMKASGIQ 318
G+ EA + + M+ G++
Sbjct: 228 GMNEEAIRLMCDMREEGVE 246
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 80/264 (30%), Positives = 131/264 (49%), Gaps = 9/264 (3%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+ CG LD AR++FDE+P R+ +W ++VGYV +E I L +M R++G V
Sbjct: 192 MYGKCGVLDDARKVFDEIPERNVVAWNALMVGYVQNGMNEEAIRLMCDM--REEG----V 245
Query: 115 FPAWIIVCV-LKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADF 173
P + V L A + GKQ H + G + L S++NFY K +E A+
Sbjct: 246 EPTRVTVSTCLSASANMCGVGEGKQSHAVAVVNGLEMDNILGTSVLNFYCKVGLIEYAEM 305
Query: 174 VFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDD 233
VF ++ + V W I ++G K M E++K + T S+++ A +
Sbjct: 306 VFDRMIGKDVVTWNLLISGYVQQGLVEDAIRMCKLMRLEKLKFDCVTLSTLMSAAARTQN 365
Query: 234 DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
G+++ ++ ESD + ++DMY KC + DA+RVF+ V +K++ WN +L
Sbjct: 366 S-KLGKEVQCYCIRHSFESDIGLASTVIDMYAKCGSIVDAKRVFDSTV-QKDLILWNTLL 423
Query: 294 VGYIRNGLYVEATKFLYLMKASGI 317
Y +GL EA + Y M+ +
Sbjct: 424 AAYAESGLSGEALRLFYEMQLESV 447
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 87/342 (25%), Positives = 161/342 (47%), Gaps = 11/342 (3%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFL-NRLLLMHVSC 59
MD + I ++Y +++ C +++D ++ I K ++ +L++ + C
Sbjct: 35 MDFRNVRIGPEIYGEILQGCVYERDFHTGRQIHARILKNGEFYAKNEYIETKLVIFYAKC 94
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AW 118
+ A LF ++ +R+ SWA +I V + + F EM+K + +FP +
Sbjct: 95 DAHEIAETLFSKLRVRNVFSWAAIIGVKCRVGLAEGALMGFVEMLKDE------IFPDNF 148
Query: 119 IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRN-ISLTGSLINFYGKFRCLEDADFVFSQ 177
++ V KAC G+ +HG + K G + + + SL + YGK L+DA VF +
Sbjct: 149 VVPNVCKACGALQWSGFGRGIHGYVAKSGLYGDCVFVASSLADMYGKCGVLDDARKVFDE 208
Query: 178 LKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC 237
+ N V W A +V + G + +M E ++ T S+ L A + G
Sbjct: 209 IPERNVVAWNALMVGYVQNGMNEEAIRLMCDMREEGVEPTRVTVSTCLSASANMCGVGE- 267
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYI 297
G+Q HA V GLE D + +++ Y K L+ AE VF+ ++ K ++ +WN ++ GY+
Sbjct: 268 GKQSHAVAVVNGLEMDNILGTSVLNFYCKVGLIEYAEMVFDRMIGK-DVVTWNLLISGYV 326
Query: 298 RNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKI 339
+ GL +A + LM+ ++ ++ L A + SK+
Sbjct: 327 QQGLVEDAIRMCKLMRLEKLKFDCVTLSTLMSAAARTQNSKL 368
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/280 (22%), Positives = 117/280 (41%), Gaps = 44/280 (15%)
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI 119
G ++ A +FD M +D +W ++I GYV ++ I + ++M+ +K L F
Sbjct: 298 GLIEYAEMVFDRMIGKDVVTWNLLISGYVQQGLVEDAIRM-CKLMRLEK----LKFDCVT 352
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
+ ++ A T N +LGK+V + +I L ++I+ Y K + DA VF
Sbjct: 353 LSTLMSAAARTQNSKLGKEVQCYCIRHSFESDIGLASTVIDMYAKCGSIVDAKRVFDSTV 412
Query: 180 RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC---GGVDDDGN 236
+ + ++W + G + F EM E + N+ T++ ++ + G VD+
Sbjct: 413 QKDLILWNTLLAAYAESGLSGEALRLFYEMQLESVPPNAITWNLIILSLFRNGQVDEAKE 472
Query: 237 CGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGY 296
QM ++ G+V + SW M+ G
Sbjct: 473 MFLQMQSS--------------GIV----------------------PTLVSWTTMMNGL 496
Query: 297 IRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
++NG EA +L M+ SG++ I AC+++++
Sbjct: 497 VQNGCSEEAVHYLRKMQESGLRPNVFSITVALSACANLAS 536
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 93/199 (46%), Gaps = 12/199 (6%)
Query: 41 NIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMP----LRDFNSWAVMIVGYVDVADYQEC 96
++ P + N ++L GQ+D A+++F +M + SW M+ G V +E
Sbjct: 446 SVPPNAITWNLIILSLFRNGQVDEAKEMFLQMQSSGIVPTLVSWTTMMNGLVQNGCSEEA 505
Query: 97 ITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFK--LGSSRNISL 154
+ +M ++ G VF I L AC ++ LG+ VHG + + L SS ++S+
Sbjct: 506 VHYLRKM--QESGLRPNVFS---ITVALSACANLASLHLGRSVHGYIIRNQLHSS-SVSI 559
Query: 155 TGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERI 214
+LI+ Y K + A+ VF + ++ A I G+ + + ++ + I
Sbjct: 560 ETALIDMYAKCGDISKAEKVFKRKSYSELPLFNAMISAYALSGNVKEAIDLYRSLEDMGI 619
Query: 215 KKNSYTFSSVLKACGGVDD 233
K ++ TF++VL AC D
Sbjct: 620 KPDNITFTNVLSACNHAGD 638
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 61/283 (21%), Positives = 113/283 (39%), Gaps = 47/283 (16%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+ CG + A+++FD +D W ++ Y + E + LF EM + V
Sbjct: 394 MYAKCGSIVDAKRVFDSTVQKDLILWNTLLAAYAESGLSGEALRLFYEM------QLESV 447
Query: 115 FPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFV 174
P I T N+ + LF+ G +++A +
Sbjct: 448 PPNAI----------TWNLIILS-----LFRNGQ-------------------VDEAKEM 473
Query: 175 FSQLKRHNTVV----WTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
F Q++ V WT + + G + + ++M ++ N ++ + L AC
Sbjct: 474 FLQMQSSGIVPTLVSWTTMMNGLVQNGCSEEAVHYLRKMQESGLRPNVFSITVALSACAN 533
Query: 231 VDDDGNCGRQMHANIVKIGLESDEY-VQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ + GR +H I++ L S ++ L+DMY KC + AE+VF+ + +
Sbjct: 534 LASL-HLGRSVHGYIIRNQLHSSSVSIETALIDMYAKCGDISKAEKVFKR-KSYSELPLF 591
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
NAM+ Y +G EA ++ GI+ ++ AC+
Sbjct: 592 NAMISAYALSGNVKEAIDLYRSLEDMGIKPDNITFTNVLSACN 634
>gi|302812982|ref|XP_002988177.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
gi|300143909|gb|EFJ10596.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
Length = 742
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 79/297 (26%), Positives = 143/297 (48%), Gaps = 20/297 (6%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEM--PLRDFNSWAVMIVGYVDVADYQECITLFAEM 103
LL N ++ M+ CG ++ AR++FD M LRD SW +M+ YV ++ I L+ M
Sbjct: 195 LLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSTYVHNDRGKDAIQLYQRM 254
Query: 104 MKRKKGHMLLVFPAWII-VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFY 162
R P + V +L AC ++ LG+ +H + +N+ + +L++ Y
Sbjct: 255 QLR---------PDKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVGNALVSMY 305
Query: 163 GKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEM-------GRERIK 215
K +A VF ++++ + + WT I R + + F++M +R+K
Sbjct: 306 AKCGSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQRVK 365
Query: 216 KNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAER 275
++ F ++L AC V G+ + GL SD+ V +V++YGKC + +A R
Sbjct: 366 PDALAFVTILNACADVSALEQ-GKMVSEQAASCGLSSDKAVGTAVVNLYGKCGEIEEARR 424
Query: 276 VFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+F+ + + ++ WNAM+ Y + G EA K + M+ G++ + +ACS
Sbjct: 425 IFDAVCSRPDVQLWNAMIAVYAQFGQSHEALKLFWRMEMEGVRPDSFSFVSILLACS 481
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 76/288 (26%), Positives = 131/288 (45%), Gaps = 7/288 (2%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
Y L+ C+ +D G +L+ ++ ++ N L+ M+ CG AR +FD+M
Sbjct: 263 YVSLLSACSSAED-VGLGRVLHKQIVNDELEKNVIVGNALVSMYAKCGSHTEARAVFDKM 321
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMK-RKKGHMLLVFP-AWIIVCVLKACVCT 130
R SW +I YV E LF +M++ K G V P A V +L AC
Sbjct: 322 EQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQRVKPDALAFVTILNACADV 381
Query: 131 MNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL-KRHNTVVWTAK 189
+E GK V G S + ++ +++N YGK +E+A +F + R + +W A
Sbjct: 382 SALEQGKMVSEQAASCGLSSDKAVGTAVVNLYGKCGEIEEARRIFDAVCSRPDVQLWNAM 441
Query: 190 IVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG--GVDDDGNCGRQMHANIVK 247
I + G H+ F M E ++ +S++F S+L AC G++D G +
Sbjct: 442 IAVYAQFGQSHEALKLFWRMEMEGVRPDSFSFVSILLACSHTGLEDQGKSYFTSMTTEYR 501
Query: 248 IGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
+ ++ C + D+ G+ L++AE E + K + +W ++L
Sbjct: 502 NVTRTIQHFGC-VADLLGRGGRLKEAEEFLEKLPVKPDAVAWTSLLAA 548
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/265 (24%), Positives = 118/265 (44%), Gaps = 16/265 (6%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+ C A+ FD + R+ SW ++ + +E + M R+ G V
Sbjct: 1 MYAHCDSPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERM--RQDG----V 54
Query: 115 FP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADF 173
P A + L +C ++ G ++H ++ + ++ +L+N Y K L A
Sbjct: 55 RPDAVTFITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKR 114
Query: 174 VFSQLKR-HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG-- 230
VF++++R N + W+ + G+ + F+ M IK ++L AC
Sbjct: 115 VFAKMERTRNVISWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPA 174
Query: 231 -VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK-KNIAS 288
V D GR +H+ I G ES+ V ++ MYG+C + +A +VF+ + + +++ S
Sbjct: 175 LVQD----GRMIHSCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVS 230
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMK 313
WN ML Y+ N +A + M+
Sbjct: 231 WNIMLSTYVHNDRGKDAIQLYQRMQ 255
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 78/164 (47%), Gaps = 1/164 (0%)
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
DA F L++ N WT + G + + M ++ ++ ++ TF + L +CG
Sbjct: 10 DAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVTFITALGSCG 69
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ + G ++H +V LE D V L++MY KC L A+RVF + +N+ SW
Sbjct: 70 DPESLRD-GIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTRNVISW 128
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSS 333
+ M + +G EA + M GI+ +S + + ACSS
Sbjct: 129 SIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSS 172
>gi|147820082|emb|CAN67135.1| hypothetical protein VITISV_005195 [Vitis vinifera]
Length = 800
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 76/250 (30%), Positives = 123/250 (49%), Gaps = 6/250 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N ++ + CG++ A ++FDE RD SW MI G V+ +++ + F + MKR
Sbjct: 38 NNIISGYAKCGEIRIASKMFDETSQRDAVSWNTMIAGXVNFGNFETALE-FLKSMKRYG- 95
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ +LK C +E+G+QVH ++ K+G N+ +L++ Y K +E
Sbjct: 96 ---FAVDGYSFGSILKGVACVGYVEVGQQVHSMIVKIGYEGNVFAGSALLDMYAKCERVE 152
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
DA VF + N+V W A I G F M E ++ + TF+ +L
Sbjct: 153 DAFEVFKSINIRNSVTWNALISGYAHVGDRGTAFWLLDCMELEGVEIDDGTFAPLLTLLD 212
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
D Q+HA IVK GL SD V ++ Y +C + DAERVF+ ++ +++ +W
Sbjct: 213 DPDLH-KLTTQVHAKIVKHGLASDTTVCNAIITAYSECGSIEDAERVFDGAIETRDLVTW 271
Query: 290 NAMLVGYIRN 299
N+ML Y+ N
Sbjct: 272 NSMLAAYLVN 281
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 91/184 (49%), Gaps = 6/184 (3%)
Query: 140 HGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHF 199
H L K G++ +I ++I+ Y K + A +F + + + V W I G+F
Sbjct: 22 HCLAIKSGTTASIYTANNIISGYAKCGEIRIASKMFDETSQRDAVSWNTMIAGXVNFGNF 81
Query: 200 HQVFNDFKEMGRERIKKNSYTFSSVLK--ACGGVDDDGNCGRQMHANIVKIGLESDEYVQ 257
K M R + Y+F S+LK AC G + G+Q+H+ IVKIG E + +
Sbjct: 82 ETALEFLKSMKRYGFAVDGYSFGSILKGVACVGYVE---VGQQVHSMIVKIGYEGNVFAG 138
Query: 258 CGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGI 317
L+DMY KC + DA VF+ I + +N +WNA++ GY G A L M+ G+
Sbjct: 139 SALLDMYAKCERVEDAFEVFKSI-NIRNSVTWNALISGYAHVGDRGTAFWLLDCMELEGV 197
Query: 318 QIQE 321
+I +
Sbjct: 198 EIDD 201
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 70/291 (24%), Positives = 134/291 (46%), Gaps = 18/291 (6%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLF----AEMMKRK 107
LL M+ C +++ A ++F + +R+ +W +I GY V D L E ++
Sbjct: 141 LLDMYAKCERVEDAFEVFKSINIRNSVTWNALISGYAHVGDRGTAFWLLDCMELEGVEID 200
Query: 108 KGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
G +L +L QVH + K G + + ++ ++I Y +
Sbjct: 201 DG---------TFAPLLTLLDDPDLHKLTTQVHAKIVKHGLASDTTVCNAIITAYSECGS 251
Query: 168 LEDADFVF-SQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
+EDA+ VF ++ + V W + + + F F EM + + YT++SV+
Sbjct: 252 IEDAERVFDGAIETRDLVTWNSMLAAYLVNNQEEEAFELFLEMQVLGFEPDIYTYTSVIS 311
Query: 227 ACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKC--RLLRDAERVFELIVDKK 284
A G G+ +H ++K GLE + L+ MY K + + +A +FE + +K
Sbjct: 312 AAFEXAHQGQ-GKSLHGLVIKRGLEFLVPISNSLIAMYLKSHSKSMDEALNIFESLENKD 370
Query: 285 NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
++ SWN++L G+ ++GL +A KF M++ + I + + +CS ++
Sbjct: 371 HV-SWNSILTGFSQSGLSEDALKFFENMRSQYVVIDHYAFSAVLRSCSDLA 420
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 66/290 (22%), Positives = 127/290 (43%), Gaps = 36/290 (12%)
Query: 50 NRLLLMHVSCGQLDTARQLFD-EMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
N ++ + CG ++ A ++FD + RD +W M+ Y+ V + +E M+
Sbjct: 240 NAIITAYSECGSIEDAERVFDGAIETRDLVTWNSMLAAYL-VNNQEEEAFELFLEMQ--- 295
Query: 109 GHMLLVFPA--WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF- 165
+L F + V+ A + GK +HGL+ K G + ++ SLI Y K
Sbjct: 296 ---VLGFEPDIYTYTSVISAAFEXAHQGQGKSLHGLVIKRGLEFLVPISNSLIAMYLKSH 352
Query: 166 -RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
+ +++A +F L+ + V W + + + G F+ M + + + Y FS+V
Sbjct: 353 SKSMDEALNIFESLENKDHVSWNSILTGFSQSGLSEDALKFFENMRSQYVVIDHYAFSAV 412
Query: 225 LKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
L++C +++ + L +V CG+++ DA + F+
Sbjct: 413 LRSC--------------SDLATLQLGQQVHVLCGVIE---------DARKSFDATPKDS 449
Query: 285 NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
+IA WN+++ GY ++G A +LMK +++ + ACS I
Sbjct: 450 SIA-WNSLIFGYAQHGRGKIALDLFFLMKDRRVKLDHITFVAVLTACSHI 498
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/295 (20%), Positives = 121/295 (41%), Gaps = 38/295 (12%)
Query: 6 LPITTDMYT-CLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSC--GQL 62
L D+YT + F+ G + L+ + + ++ + N L+ M++ +
Sbjct: 297 LGFEPDIYTYTSVISAAFEXAHQGQGKSLHGLVIKRGLEFLVPISNSLIAMYLKSHSKSM 356
Query: 63 DTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVC 122
D A +F+ + +D SW ++ G+ ++ + F M + +V +
Sbjct: 357 DEALNIFESLENKDHVSWNSILTGFSQSGLSEDALKFFENMRSQ-----YVVIDHYAFSA 411
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
VL++C ++LG+QVH L +EDA F + +
Sbjct: 412 VLRSCSDLATLQLGQQVHVLC----------------------GVIEDARKSFDATPKDS 449
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC---GGVDDDGNCGR 239
++ W + I + G + F M R+K + TF +VL AC G V++ + +
Sbjct: 450 SIAWNSLIFGYAQHGRGKIALDLFFLMKDRRVKLDHITFVAVLTACSHIGLVEEGWSFLK 509
Query: 240 QMHANIVKIGLESD-EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
M ++ G+ E+ C ++D+ G+ L +A+ + E + + + W +L
Sbjct: 510 SMESD---YGIPPRMEHYAC-MIDLLGRAGRLDEAKALIEAMPFEPDAMVWKTLL 560
>gi|15232500|ref|NP_188131.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546753|sp|P0C898.1|PP232_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g15130
gi|332642102|gb|AEE75623.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 689
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 81/279 (29%), Positives = 141/279 (50%), Gaps = 13/279 (4%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L+ N L+ M+ C + A ++FD MP R+ SW+ ++ G+V D + ++LF+EM +
Sbjct: 41 LITSNYLIDMYCKCREPLMAYKVFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEMGR 100
Query: 106 RKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
+ ++P + LKAC +E G Q+HG K+G + + SL++ Y K
Sbjct: 101 QG------IYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSK 154
Query: 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKK--NSYTFS 222
+ +A+ VF ++ + + W A I G+ + + F M IK+ + +T +
Sbjct: 155 CGRINEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLT 214
Query: 223 SVLKACGGVDDDGNCGRQMHANIVKIGLE--SDEYVQCGLVDMYGKCRLLRDAERVFELI 280
S+LKAC G+Q+H +V+ G S + LVD+Y KC L A + F+ I
Sbjct: 215 SLLKACSSTGMI-YAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQI 273
Query: 281 VDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQI 319
+K I SW+++++GY + G +VEA ++ QI
Sbjct: 274 KEKTMI-SWSSLILGYAQEGEFVEAMGLFKRLQELNSQI 311
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 78/216 (36%), Positives = 112/216 (51%), Gaps = 4/216 (1%)
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
+V +L+ C + G QVH L K GS N+ + LI+ Y K R A VF +
Sbjct: 9 LVSILRVCTRKGLSDQGGQVHCYLLKSGSGLNLITSNYLIDMYCKCREPLMAYKVFDSMP 68
Query: 180 RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGR 239
N V W+A + + G + F EMGR+ I N +TFS+ LKACG ++ G
Sbjct: 69 ERNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNALEK-GL 127
Query: 240 QMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRN 299
Q+H +KIG E V LVDMY KC + +AE+VF IVD +++ SWNAM+ G++
Sbjct: 128 QIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVD-RSLISWNAMIAGFVHA 186
Query: 300 GLYVEATKFLYLMKASGIQ--IQESLINDLRIACSS 333
G +A +M+ + I+ E + L ACSS
Sbjct: 187 GYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSS 222
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 86/290 (29%), Positives = 144/290 (49%), Gaps = 17/290 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ CG+++ A ++F + R SW MI G+V + + F M ++
Sbjct: 146 NSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMM---QEA 202
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLG--SSRNISLTGSLINFYGKFRC 167
++ + + +LKAC T + GKQ+HG L + G + ++TGSL++ Y K
Sbjct: 203 NIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGY 262
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
L A F Q+K + W++ I+ +EG F + FK + + +S+ SS++
Sbjct: 263 LFSARKAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSSII-- 320
Query: 228 CGGVDDDGNC---GRQMHANIVKI--GLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282
GV D G+QM A VK+ GLE+ V +VDMY KC L+ +AE+ F +
Sbjct: 321 --GVFADFALLRQGKQMQALAVKLPSGLETS--VLNSVVDMYLKCGLVDEAEKCFAEM-Q 375
Query: 283 KKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
K++ SW ++ GY ++GL ++ + Y M I+ E + ACS
Sbjct: 376 LKDVISWTVVITGYGKHGLGKKSVRIFYEMLRHNIEPDEVCYLAVLSACS 425
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/263 (23%), Positives = 126/263 (47%), Gaps = 15/263 (5%)
Query: 36 IRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQE 95
+R + + L+ ++V CG L +AR+ FD++ + SW+ +I+GY ++ E
Sbjct: 237 VRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIKEKTMISWSSLILGYAQEGEFVE 296
Query: 96 CITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLT 155
+ LF + + + F I+ V + GKQ+ L KL S S+
Sbjct: 297 AMGLFKRLQELNS--QIDSFALSSIIGVFADFAL---LRQGKQMQALAVKLPSGLETSVL 351
Query: 156 GSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIK 215
S+++ Y K +++A+ F++++ + + WT I + G + F EM R I+
Sbjct: 352 NSVVDMYLKCGLVDEAEKCFAEMQLKDVISWTVVITGYGKHGLGKKSVRIFYEMLRHNIE 411
Query: 216 KNSYTFSSVLKAC---GGVDDDGNCGRQMHANIVKI-GLESD-EYVQCGLVDMYGKCRLL 270
+ + +VL AC G + + G ++ + +++ G++ E+ C +VD+ G+ L
Sbjct: 412 PDEVCYLAVLSACSHSGMIKE----GEELFSKLLETHGIKPRVEHYAC-VVDLLGRAGRL 466
Query: 271 RDAERVFELIVDKKNIASWNAML 293
++A+ + + + K N+ W +L
Sbjct: 467 KEAKHLIDTMPIKPNVGIWQTLL 489
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 81/167 (48%), Gaps = 17/167 (10%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
LN ++ M++ CG +D A + F EM L+D SW V+I GY ++ + +F EM++
Sbjct: 351 LNSVVDMYLKCGLVDEAEKCFAEMQLKDVISWTVVITGYGKHGLGKKSVRIFYEMLRHN- 409
Query: 109 GHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKL-GSSRNISLTGSLINFYGKFR 166
+ P + + VL AC + ++ G+++ L + G + +++ G+
Sbjct: 410 -----IEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETHGIKPRVEHYACVVDLLGRAG 464
Query: 167 CLEDADFVFSQLK-RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRE 212
L++A + + + N +W +++ CR V D E+G+E
Sbjct: 465 RLKEAKHLIDTMPIKPNVGIWQT-LLSLCR------VHGDI-ELGKE 503
Score = 45.4 bits (106), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 6/116 (5%)
Query: 223 SVLKACG--GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELI 280
S+L+ C G+ D G Q+H ++K G + L+DMY KCR A +VF+ +
Sbjct: 11 SILRVCTRKGLSDQGG---QVHCYLLKSGSGLNLITSNYLIDMYCKCREPLMAYKVFDSM 67
Query: 281 VDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
++ N+ SW+A++ G++ NG + M GI E + AC ++A
Sbjct: 68 PER-NVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNA 122
>gi|357130409|ref|XP_003566841.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Brachypodium distachyon]
Length = 815
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 83/308 (26%), Positives = 146/308 (47%), Gaps = 10/308 (3%)
Query: 12 MYTCLIKECTFQKDSAGAFELLNHIRK-RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFD 70
++ +++C ++ EL H R R + P L+ LL M+ CG+L AR++FD
Sbjct: 52 LHAAALQDCAVRRTLRRGQEL--HARLLRSALHPDTFLLDSLLNMYCKCGRLVDARRVFD 109
Query: 71 EMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCT 130
MP RD +W MI + D + + +FA M + + + + VLKAC
Sbjct: 110 GMPHRDIVAWTAMISAHTAAGDSDQALDMFARMNQEG-----IAPNGFTLASVLKACSGG 164
Query: 131 MNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKI 190
+ + QVHG + KL + + SL+ Y L+ A+ V L + V W A +
Sbjct: 165 SHSKFTHQVHGQVVKLNGLDDPYVGSSLVEAYTSCGELDAAETVLLGLPERSDVSWNALL 224
Query: 191 VNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGL 250
R G + +V +++ + + YT +VLK C + G+ +HA+++K GL
Sbjct: 225 NGYARHGDYRRVMIIIEKLVASGDEISKYTLPTVLKCCMEL-GLAKYGQSVHASVIKRGL 283
Query: 251 ESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLY 310
E+D + LV+MY +C +A VF + +D+ ++ +AM+ + R+ + EA
Sbjct: 284 ETDNVLNSCLVEMYSRCLSAEEAYEVF-IRIDEPDVVHCSAMISCFDRHDMAWEALDLFV 342
Query: 311 LMKASGIQ 318
M G++
Sbjct: 343 KMSGMGVK 350
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 71/253 (28%), Positives = 117/253 (46%), Gaps = 12/253 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+ +L M+V G + A FD + D SW ++ + ++ ++ + +F +M
Sbjct: 392 DAILNMYVKVGAVQDATVTFDLIHEPDTFSWNTILSAFYSGSNCEQGLRIFKQMACEG-- 449
Query: 110 HMLLVFPA--WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
F A + V VL+ C MN+ G QVH + K G + ++ L++ Y + C
Sbjct: 450 -----FSANKYTYVSVLRCCTSLMNLRFGTQVHACILKSGLQNDTDVSRMLVDMYAQSGC 504
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
A VF QLK + WT + + +V F+ M RE I+ + T + L
Sbjct: 505 FTSACLVFEQLKERDAFSWTVIMSGYAKTEEAEKVVEYFRSMLRENIRPSDATLAVSLSV 564
Query: 228 CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
C + G+ G Q+H+ +K G S V LVDMY KC + DAE +F + +A
Sbjct: 565 CSDMASLGS-GLQLHSWAIKSGWNS-SVVSGALVDMYVKCGNIADAEMLFHESETRDQVA 622
Query: 288 SWNAMLVGYIRNG 300
WN ++ GY ++G
Sbjct: 623 -WNTIICGYSQHG 634
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 101/216 (46%), Gaps = 2/216 (0%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
L+ C + G+++H L + + L SL+N Y K L DA VF + +
Sbjct: 56 ALQDCAVRRTLRRGQELHARLLRSALHPDTFLLDSLLNMYCKCGRLVDARRVFDGMPHRD 115
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
V WTA I + G Q + F M +E I N +T +SVLKAC G Q+H
Sbjct: 116 IVAWTAMISAHTAAGDSDQALDMFARMNQEGIAPNGFTLASVLKACSG-GSHSKFTHQVH 174
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
+VK+ D YV LV+ Y C L AE V + ++ ++ SWNA+L GY R+G Y
Sbjct: 175 GQVVKLNGLDDPYVGSSLVEAYTSCGELDAAETVLLGLPERSDV-SWNALLNGYARHGDY 233
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIACSSISASK 338
+ + ASG +I + + + C + +K
Sbjct: 234 RRVMIIIEKLVASGDEISKYTLPTVLKCCMELGLAK 269
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 107/247 (43%), Gaps = 7/247 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+ L+ + SCG+LD A + +P R SW ++ GY DY+ + + +++
Sbjct: 190 SSLVEAYTSCGELDAAETVLLGLPERSDVSWNALLNGYARHGDYRRVMIIIEKLVASGDE 249
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
P VLK C+ + G+ VH + K G + L L+ Y + E
Sbjct: 250 ISKYTLPT-----VLKCCMELGLAKYGQSVHASVIKRGLETDNVLNSCLVEMYSRCLSAE 304
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
+A VF ++ + V +A I R + + F +M +K N Y F +
Sbjct: 305 EAYEVFIRIDEPDVVHCSAMISCFDRHDMAWEALDLFVKMSGMGVKPNHYIFVGIAGVAS 364
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
D C R +HA IVK G + V +++MY K ++DA F+LI + + SW
Sbjct: 365 RTGDANLC-RSVHAYIVKSGFAMLKGVGDAILNMYVKVGAVQDATVTFDLI-HEPDTFSW 422
Query: 290 NAMLVGY 296
N +L +
Sbjct: 423 NTILSAF 429
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 60/249 (24%), Positives = 120/249 (48%), Gaps = 13/249 (5%)
Query: 49 LNRLLL-MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRK 107
++R+L+ M+ G +A +F+++ RD SW V++ GY + ++ + F M++
Sbjct: 491 VSRMLVDMYAQSGCFTSACLVFEQLKERDAFSWTVIMSGYAKTEEAEKVVEYFRSMLREN 550
Query: 108 KGHMLLVFPAWIIVCV-LKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166
+ P+ + V L C ++ G Q+H K G + ++ ++G+L++ Y K
Sbjct: 551 ------IRPSDATLAVSLSVCSDMASLGSGLQLHSWAIKSGWNSSV-VSGALVDMYVKCG 603
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
+ DA+ +F + + + V W I + GH ++ + FK+M E + + TF VL
Sbjct: 604 NIADAEMLFHESETRDQVAWNTIICGYSQHGHGYKALDAFKQMVDEGKRPDGITFVGVLS 663
Query: 227 AC--GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
AC G+ ++G + ++I I + Y C +VD+ K L +AE + +
Sbjct: 664 ACSHAGLLNEGRKYFKSLSSIYGITPTMEHYA-C-MVDILSKAGRLVEAESLINQMPLAP 721
Query: 285 NIASWNAML 293
+ + W +L
Sbjct: 722 DSSIWRTIL 730
>gi|302764952|ref|XP_002965897.1| hypothetical protein SELMODRAFT_85072 [Selaginella moellendorffii]
gi|300166711|gb|EFJ33317.1| hypothetical protein SELMODRAFT_85072 [Selaginella moellendorffii]
Length = 318
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 87/320 (27%), Positives = 150/320 (46%), Gaps = 11/320 (3%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
Y +++ C K ++ ++IR + +L N L+ M++ CG L A+++FDEM
Sbjct: 10 YARVLRVCAKNKALQQGKKIHSYIRDSGQEQDRILG-NHLIEMYLKCGSLRDAQRMFDEM 68
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN 132
RD W MI Y + Y+ + LF M + F V VL C
Sbjct: 69 VSRDAILWTSMISAYSERGHYKMALKLFQRMQGESVKPDNVTF-----VTVLNCCGKMSA 123
Query: 133 MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192
++ GK +H L G ++ + +L+N YGK L DA VF +++ + + W A +
Sbjct: 124 LQEGKLIHSQLTGNGFENDLIVKTALLNMYGKCGSLTDARKVFEEIQGKDIITWNAMLSV 183
Query: 193 NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLES 252
+ + + +++M + + TF +V+ AC G + GRQ+HA + GLE+
Sbjct: 184 YVQHSAYEEALELYRKM---ELTPSVSTFVTVINACAGATALED-GRQVHAVVTARGLET 239
Query: 253 DEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLM 312
++ V L++MYGKC L DA +VF + ++A W M+ Y + EA LM
Sbjct: 240 EDAVSSALLNMYGKCGSLEDAAKVFWKRREYDDVA-WAHMISFYTQWHRSKEALGLFRLM 298
Query: 313 KASGIQIQESLINDLRIACS 332
+ G+++ + AC+
Sbjct: 299 RLEGVRVDKFAFTTTLSACN 318
>gi|449507426|ref|XP_004163029.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Cucumis sativus]
Length = 619
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 86/293 (29%), Positives = 136/293 (46%), Gaps = 11/293 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR--K 107
+ L+ M+ CG++ AR++FDE+ +D SW MI GY + E + LF EMM+ +
Sbjct: 166 HSLITMYARCGKMGDARKVFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQ 225
Query: 108 KGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
M LV VL AC +++LG V + + + N + +LI+ YGK
Sbjct: 226 PNEMSLV-------SVLGACGELGDLKLGTWVEEFVVENKMTLNYFMGSALIHMYGKCGD 278
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
L A +F +K+ + V W A I + G + F++M + T +L A
Sbjct: 279 LVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSA 338
Query: 228 CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
C + + G+Q+ + G + D YV LVDMY KC L +A RVF + KKN
Sbjct: 339 CASIGAL-DLGKQVEIYASERGFQDDVYVGTALVDMYAKCGSLDNAFRVF-YGMPKKNEV 396
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKIN 340
SWNAM+ +G EA M G + + I + + + + A ++
Sbjct: 397 SWNAMISALAFHGQAQEALALFKSMMNEGGTVSPNDITFVGVLSACVHAGLVD 449
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 72/274 (26%), Positives = 123/274 (44%), Gaps = 13/274 (4%)
Query: 74 LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLK-------- 125
L+DF +V +D +Y + + K + L F + + LK
Sbjct: 73 LKDFAYASVFFSNILDPTEYSFNVMIRGLSTAWNKSSLALEFYSRMKFLGLKPNNLTYPF 132
Query: 126 ---ACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
AC + +E G+ H + + G + ++ SLI Y + + DA VF ++ + +
Sbjct: 133 LFIACSNLLAVENGRMGHCSVIRRGLDEDGHVSHSLITMYARCGKMGDARKVFDEISQKD 192
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
V W + I + H + F+EM + N + SVL ACG + D G +
Sbjct: 193 LVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDL-KLGTWVE 251
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
+V+ + + ++ L+ MYGKC L A R+F+ + KK+ +WNAM+ GY +NG+
Sbjct: 252 EFVVENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSM-KKKDKVTWNAMITGYAQNGMS 310
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
EA K M+ S + + + AC+SI A
Sbjct: 311 EEAIKLFQDMRMSSTAPDQITLIGILSACASIGA 344
>gi|410110035|gb|AFV61097.1| pentatricopeptide repeat-containing protein 81, partial [Lippia
rotundifolia]
Length = 362
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 75/274 (27%), Positives = 136/274 (49%), Gaps = 10/274 (3%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDE-MPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRK 107
LN + + CG ++ A+++FD RD +W M+ Y++ + +F EM+K++
Sbjct: 93 LNATITAYAECGCIEDAKRMFDSSQGYRDLVTWNSMLAAYLEHNXEEYGFNIFLEMVKQR 152
Query: 108 KGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF-- 165
L A+ + V+ AC LGK +H + K G + ++ +L++ Y K
Sbjct: 153 -----LEMDAYTLSSVISACFEDTQQSLGKSLHCFVIKKGLDQVTQISNALVSMYLKSNS 207
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
R +EDA +F + + V W + + G F+ + + + + YTF++VL
Sbjct: 208 RNVEDALNIFEHINVKDLVSWNTILTGLSQNGLSENALRLFQNIHLDHLVTDQYTFAAVL 267
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
++C + + GRQ+H +VK G E +EY+ L+ MY KC ++ DA FEL + K+
Sbjct: 268 RSCSDLAT-LHLGRQIHVLVVKSGFECNEYIASALIFMYSKCGIIEDARESFELSL-KET 325
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQI 319
+WN+++ Y ++G A YLM I++
Sbjct: 326 SVTWNSIIFAYAQHGQGKIALDLFYLMTERRIKL 359
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 74/254 (29%), Positives = 124/254 (48%), Gaps = 10/254 (3%)
Query: 59 CGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAW 118
C +++ A ++F M R+ SW +I GY ++ D + C+TLF M +G +
Sbjct: 2 CRRVEDANKVFKYMRERNAVSWNALIGGYAEMGDLERCVTLFVGM--EIEG---VRVDDA 56
Query: 119 IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVF-SQ 177
+L + +L +Q+HG + K G ++ + I Y + C+EDA +F S
Sbjct: 57 TFAPLLTLLNDAESYDLTRQLHGKIMKRGLEYENTVLNATITAYAECGCIEDAKRMFDSS 116
Query: 178 LKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC 237
+ V W + + FN F EM ++R++ ++YT SSV+ AC D +
Sbjct: 117 QGYRDLVTWNSMLAAYLEHNXEEYGFNIFLEMVKQRLEMDAYTLSSVISACFE-DTQQSL 175
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGK--CRLLRDAERVFELIVDKKNIASWNAMLVG 295
G+ +H ++K GL+ + LV MY K R + DA +FE I + K++ SWN +L G
Sbjct: 176 GKSLHCFVIKKGLDQVTQISNALVSMYLKSNSRNVEDALNIFEHI-NVKDLVSWNTILTG 234
Query: 296 YIRNGLYVEATKFL 309
+NGL A +
Sbjct: 235 LSQNGLSENALRLF 248
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 67/136 (49%), Gaps = 1/136 (0%)
Query: 164 KFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSS 223
K R +EDA+ VF ++ N V W A I G + F M E ++ + TF+
Sbjct: 1 KCRRVEDANKVFKYMRERNAVSWNALIGGYAEMGDLERCVTLFVGMEIEGVRVDDATFAP 60
Query: 224 VLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
+L + + RQ+H I+K GLE + V + Y +C + DA+R+F+
Sbjct: 61 LLTLLNDAES-YDLTRQLHGKIMKRGLEYENTVLNATITAYAECGCIEDAKRMFDSSQGY 119
Query: 284 KNIASWNAMLVGYIRN 299
+++ +WN+ML Y+ +
Sbjct: 120 RDLVTWNSMLAAYLEH 135
>gi|357468777|ref|XP_003604673.1| hypothetical protein MTR_4g015760 [Medicago truncatula]
gi|355505728|gb|AES86870.1| hypothetical protein MTR_4g015760 [Medicago truncatula]
Length = 838
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 81/282 (28%), Positives = 135/282 (47%), Gaps = 8/282 (2%)
Query: 38 KRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECI 97
K+V I + + L+ ++ CGQ++ A ++F E P D W +I GY + +
Sbjct: 269 KKVRIDGDMFVGSALIDLYTKCGQMNDAVKVFMEYPKPDVVLWTSIISGYEQSGSPELAL 328
Query: 98 TLFAEMMKRKKGHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTG 156
F+ M+ +K V P + +V V AC N +LG+ VHG + + G + L
Sbjct: 329 AFFSRMVVSEK-----VSPDPVTLVSVASACAQLSNFKLGRSVHGFVKRKGLDNKLCLAN 383
Query: 157 SLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKK 216
SL++ YGK +++A +F ++ + + W+ + G V + F EM +RIK
Sbjct: 384 SLLHLYGKTGSIKNASNLFREMSDKDIISWSTMVACYADNGAETDVLDLFNEMLDKRIKP 443
Query: 217 NSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERV 276
N T SVL+AC + + G ++H V G E + V L+DMY KC A +
Sbjct: 444 NWVTVVSVLRACACISNLEE-GMKIHELAVNYGFEMETTVSTALMDMYMKCFSPEKAVDL 502
Query: 277 FELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
F + KK++ +W + GY NG+ E+ M +SG +
Sbjct: 503 FNRM-PKKDVIAWAVLFSGYADNGMVHESMWVFRNMLSSGTR 543
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 72/278 (25%), Positives = 134/278 (48%), Gaps = 13/278 (4%)
Query: 38 KRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECI 97
KR + L N LL ++ G + A LF EM +D SW+ M+ Y D + +
Sbjct: 371 KRKGLDNKLCLANSLLHLYGKTGSIKNASNLFREMSDKDIISWSTMVACYADNGAETDVL 430
Query: 98 TLFAEMMKRKKGHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTG 156
LF EM+ ++ + P W+ +V VL+AC C N+E G ++H L G +++
Sbjct: 431 DLFNEMLDKR------IKPNWVTVVSVLRACACISNLEEGMKIHELAVNYGFEMETTVST 484
Query: 157 SLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKK 216
+L++ Y K E A +F+++ + + + W G H+ F+ M +
Sbjct: 485 ALMDMYMKCFSPEKAVDLFNRMPKKDVIAWAVLFSGYADNGMVHESMWVFRNMLSSGTRP 544
Query: 217 NSYTFSSVLKACG--GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAE 274
++ +L G+ C +HA ++K G E+++++ L+++Y KC + DA
Sbjct: 545 DAIALVKILTTISELGILQQAVC---LHAFVIKNGFENNQFIGASLIEVYAKCSSIEDAN 601
Query: 275 RVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLM 312
+VF+ + K++ +W++++ Y +G EA K Y M
Sbjct: 602 KVFKGMT-YKDVVTWSSIIAAYGFHGQGEEALKLFYQM 638
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 70/290 (24%), Positives = 129/290 (44%), Gaps = 3/290 (1%)
Query: 47 LFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR 106
+ +L +++ + A +LF E P R W ++ Y ++ E ++LF +M
Sbjct: 172 FIVTKLNVLYARYASIHHAHKLFQETPHRTVYLWNALLRSYCFEGEWVETLSLFRQMNNV 231
Query: 107 KKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166
+ + + LK+C + LGK +HG L K+ ++ + +LI+ Y K
Sbjct: 232 SSVSIEERPDNYSVSIALKSCAGLRKLLLGKVIHGFLKKVRIDGDMFVGSALIDLYTKCG 291
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEM-GRERIKKNSYTFSSVL 225
+ DA VF + + + V+WT+ I + G F M E++ + T SV
Sbjct: 292 QMNDAVKVFMEYPKPDVVLWTSIISGYEQSGSPELALAFFSRMVVSEKVSPDPVTLVSVA 351
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
AC + + GR +H + + GL++ + L+ +YGK +++A +F + D K+
Sbjct: 352 SACAQL-SNFKLGRSVHGFVKRKGLDNKLCLANSLLHLYGKTGSIKNASNLFREMSD-KD 409
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
I SW+ M+ Y NG + M I+ + + AC+ IS
Sbjct: 410 IISWSTMVACYADNGAETDVLDLFNEMLDKRIKPNWVTVVSVLRACACIS 459
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 67/249 (26%), Positives = 106/249 (42%), Gaps = 18/249 (7%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK---RKK 108
L+ M++ C + A LF+ MP +D +WAV+ GY D E + +F M+ R
Sbjct: 486 LMDMYMKCFSPEKAVDLFNRMPKKDVIAWAVLFSGYADNGMVHESMWVFRNMLSSGTRPD 545
Query: 109 GHMLLVFPAWII-VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
L+ I + +L+ VC +H + K G N + SLI Y K
Sbjct: 546 AIALVKILTTISELGILQQAVC---------LHAFVIKNGFENNQFIGASLIEVYAKCSS 596
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRER-IKKNSYTFSSVLK 226
+EDA+ VF + + V W++ I G + F +M K N+ TF S+L
Sbjct: 597 IEDANKVFKGMTYKDVVTWSSIIAAYGFHGQGEEALKLFYQMANHSDTKPNNVTFISILS 656
Query: 227 AC--GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
AC G+ +G + N K+ S+ Y +VD+ G+ L A V + +
Sbjct: 657 ACSHSGLIKEGINMFDIMVNKYKLKPNSEHYAI--MVDLLGRMGELDMALDVINNMPMQA 714
Query: 285 NIASWNAML 293
W A+L
Sbjct: 715 GPDIWGALL 723
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 57/242 (23%), Positives = 110/242 (45%), Gaps = 21/242 (8%)
Query: 112 LLVFPAWI------IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
LL F W+ +V +L+ C +++ Q+H K G + + L Y ++
Sbjct: 128 LLKFHEWLMERRNLLVKLLETCCSKLSIS---QLHSQCLKAGLVHDSFIVTKLNVLYARY 184
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMG-------RERIKKNS 218
+ A +F + +W A + + C EG + + + F++M ER ++
Sbjct: 185 ASIHHAHKLFQETPHRTVYLWNALLRSYCFEGEWVETLSLFRQMNNVSSVSIEER--PDN 242
Query: 219 YTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE 278
Y+ S LK+C G+ G+ +H + K+ ++ D +V L+D+Y KC + DA +VF
Sbjct: 243 YSVSIALKSCAGLRKL-LLGKVIHGFLKKVRIDGDMFVGSALIDLYTKCGQMNDAVKVF- 300
Query: 279 LIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKAS-GIQIQESLINDLRIACSSISAS 337
+ K ++ W +++ GY ++G A F M S + + + AC+ +S
Sbjct: 301 MEYPKPDVVLWTSIISGYEQSGSPELALAFFSRMVVSEKVSPDPVTLVSVASACAQLSNF 360
Query: 338 KI 339
K+
Sbjct: 361 KL 362
>gi|218546768|sp|Q8S9M4.2|PP198_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g41080
Length = 650
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 87/292 (29%), Positives = 136/292 (46%), Gaps = 10/292 (3%)
Query: 43 KPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAE 102
K + N L+ +V G L AR++FDEMP R +W MI G + +E ++LF E
Sbjct: 107 KKNYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFRE 166
Query: 103 MMKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINF 161
M H L P + + V ++ +G+Q+HG K G ++ + SL +
Sbjct: 167 M------HGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHM 220
Query: 162 YGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTF 221
Y + L+D + V + N V W I+ N + G V +K M + N TF
Sbjct: 221 YMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITF 280
Query: 222 SSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIV 281
+VL +C + G G+Q+HA +KIG S V L+ MY KC L DA + F
Sbjct: 281 VTVLSSCSDLAIRGQ-GQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSERE 339
Query: 282 DKKNIASWNAMLVGYIRNGLYVEATKFLYLM-KASGIQIQESLINDLRIACS 332
D+ + W++M+ Y +G EA + M + + ++I E +L ACS
Sbjct: 340 DEDEVM-WSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACS 390
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 103/244 (42%), Gaps = 35/244 (14%)
Query: 124 LKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNT 183
+++C ++ GKQ+H LL G S + + L++ Y K A V+ ++++ N
Sbjct: 51 IQSCTTRQSLPSGKQLHCLLVVSGFSSDKFICNHLMSMYSKLGDFPSAVAVYGRMRKKNY 110
Query: 184 VVWTAKIVNNCREGHF---HQVFND----------------------------FKEMGRE 212
+ I R G +VF++ F+EM
Sbjct: 111 MSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREMHGL 170
Query: 213 RIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRD 272
+ YT SV G+ + G+Q+H +K GLE D V L MY + L+D
Sbjct: 171 GFSPDEYTLGSVFSGSAGLRSV-SIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQD 229
Query: 273 AERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLY-LMKASGIQIQESLINDLRIAC 331
E V + +N+ +WN +++G +NG E +LY +MK SG + + + +C
Sbjct: 230 GEIVIRSM-PVRNLVAWNTLIMGNAQNGC-PETVLYLYKMMKISGCRPNKITFVTVLSSC 287
Query: 332 SSIS 335
S ++
Sbjct: 288 SDLA 291
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 112/252 (44%), Gaps = 12/252 (4%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L+ + L M++ G+L + MP+R+ +W +I+G + + L+ +MMK
Sbjct: 211 LVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLY-KMMK 269
Query: 106 RKKGHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
+ P I V VL +C G+Q+H K+G+S +++ SLI+ Y K
Sbjct: 270 -----ISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSK 324
Query: 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRE-RIKKNSYTFSS 223
CL DA FS+ + + V+W++ I G + F M + ++ N F +
Sbjct: 325 CGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLN 384
Query: 224 VLKACG--GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIV 281
+L AC G+ D G M + K G + +VD+ G+ L AE + +
Sbjct: 385 LLYACSHSGLKDKGLELFDMM--VEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMP 442
Query: 282 DKKNIASWNAML 293
K +I W +L
Sbjct: 443 IKTDIVIWKTLL 454
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 66/152 (43%), Gaps = 6/152 (3%)
Query: 176 SQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDG 235
S + R +V I C +G+ + F F R I N+ F+ +++C
Sbjct: 6 SSVVRPLSVDPATAIATLCSKGNLREAFQRF----RLNIFTNTSLFTPFIQSCT-TRQSL 60
Query: 236 NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
G+Q+H +V G SD+++ L+ MY K A V+ + KKN S N ++ G
Sbjct: 61 PSGKQLHCLLVVSGFSSDKFICNHLMSMYSKLGDFPSAVAVYGRM-RKKNYMSSNILING 119
Query: 296 YIRNGLYVEATKFLYLMKASGIQIQESLINDL 327
Y+R G V A K M + ++I L
Sbjct: 120 YVRAGDLVNARKVFDEMPDRKLTTWNAMIAGL 151
>gi|2911086|emb|CAA17548.1| putative protein [Arabidopsis thaliana]
Length = 434
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 84/313 (26%), Positives = 150/313 (47%), Gaps = 11/313 (3%)
Query: 4 LCLPITTDMYT--CLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQ 61
LC ++ D+ T CL+K C K+ G + L+ + + + L+ ++ G+
Sbjct: 130 LCFGVSPDVSTFPCLVKACVALKNFKG-IDFLSDTVSSLGMDCNEFVASSLIKAYLEYGK 188
Query: 62 LDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIV 121
+D +LFD + +D W VM+ GY I F+ M + + F
Sbjct: 189 IDVPSKLFDRVLQKDCVIWNVMLNGYAKCGALDSVIKGFSVMRMDQISPNAVTFD----- 243
Query: 122 CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH 181
CVL C + ++LG Q+HGL+ G S+ SL++ Y K +DA +F + R
Sbjct: 244 CVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIKNSLLSMYSKCGRFDDASKLFRMMSRA 303
Query: 182 NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQM 241
+TV W I + G + F EM + ++ TFSS+L + ++ C +Q+
Sbjct: 304 DTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDAITFSSLLPSVSKFENLEYC-KQI 362
Query: 242 HANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGL 301
H I++ + D ++ L+D Y KCR + A+ +F + ++ + AM+ GY+ NGL
Sbjct: 363 HCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQ-CNSVDVVVFTAMISGYLHNGL 421
Query: 302 YVEATK-FLYLMK 313
Y+++ + F +L+K
Sbjct: 422 YIDSLEMFRWLVK 434
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/272 (25%), Positives = 125/272 (45%), Gaps = 15/272 (5%)
Query: 51 RLLLMHVSCGQLDTARQLFDEMPLR--DFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
R+L M+ CG ++F + LR W +I +V + + + +M+
Sbjct: 75 RILGMYAMCGSFSDCGKMFYRLDLRRSSIRPWNSIISSFVRNGLLNQALAFYFKMLCFGV 134
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+ FP C++KACV N + + + LG N + SLI Y ++ +
Sbjct: 135 SPDVSTFP-----CLVKACVALKNFKGIDFLSDTVSSLGMDCNEFVASSLIKAYLEYGKI 189
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+ +F ++ + + V+W + + G V F M ++I N+ TF VL C
Sbjct: 190 DVPSKLFDRVLQKDCVIWNVMLNGYAKCGALDSVIKGFSVMRMDQISPNAVTFDCVLSVC 249
Query: 229 GG---VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
+D G Q+H +V G++ + ++ L+ MY KC DA ++F ++ + +
Sbjct: 250 ASKLLID----LGVQLHGLVVVSGVDFEGSIKNSLLSMYSKCGRFDDASKLFRMM-SRAD 304
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGI 317
+WN M+ GY+++GL E+ F Y M +SG+
Sbjct: 305 TVTWNCMISGYVQSGLMEESLTFFYEMISSGV 336
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVF-ELIVDKKNIASWNAMLVGY 296
G+Q+HA ++ + D Y ++ MY C D ++F L + + +I WN+++ +
Sbjct: 54 GKQVHAFLIVNSISGDSYTDERILGMYAMCGSFSDCGKMFYRLDLRRSSIRPWNSIISSF 113
Query: 297 IRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
+RNGL +A F + M G+ S L AC ++
Sbjct: 114 VRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVAL 151
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/213 (21%), Positives = 89/213 (41%), Gaps = 4/213 (1%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL--KR 180
+L+AC + GKQVH L S + ++ Y D +F +L +R
Sbjct: 41 LLQACSNPNLLRQGKQVHAFLIVNSISGDSYTDERILGMYAMCGSFSDCGKMFYRLDLRR 100
Query: 181 HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQ 240
+ W + I + R G +Q + +M + + TF ++KAC + +
Sbjct: 101 SSIRPWNSIISSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFKGIDF- 159
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
+ + +G++ +E+V L+ Y + + ++F+ ++ +K+ WN ML GY + G
Sbjct: 160 LSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVPSKLFDRVL-QKDCVIWNVMLNGYAKCG 218
Query: 301 LYVEATKFLYLMKASGIQIQESLINDLRIACSS 333
K +M+ I + + C+S
Sbjct: 219 ALDSVIKGFSVMRMDQISPNAVTFDCVLSVCAS 251
>gi|449516914|ref|XP_004165491.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At5g52630-like [Cucumis
sativus]
Length = 598
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 77/249 (30%), Positives = 125/249 (50%), Gaps = 12/249 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+ L+ M+ CG++ AR LFDEMP R+ SW+ MI GY + D E +TLF + +
Sbjct: 165 SSLVDMYAKCGEIGDARHLFDEMPERNVVSWSGMIYGYAQLDDGVEALTLFKQALIEDVD 224
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
F + V++ C + +ELGK +HGL K+ + + +LI+ Y K +E
Sbjct: 225 VNDFTFSS-----VIRVCSSSTFLELGKLIHGLCLKMSFDSSSFVGSALISLYSKCGVIE 279
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC- 228
A VF ++ N +W + ++ + H +VF F+EMG +K N F SVL AC
Sbjct: 280 GAYQVFDEIPTRNLGLWNSMLIACAQHAHTQRVFGLFEEMGNVGMKPNFIXFLSVLYACS 339
Query: 229 --GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
G V+ GR+ + + G+E + LVD+ G+ L++A V + + +
Sbjct: 340 HAGLVEK----GREYFSLMRDYGIEPETEHYASLVDLLGRAGKLQEAVSVIKQMPMRPTE 395
Query: 287 ASWNAMLVG 295
+ W A+L G
Sbjct: 396 SVWGALLTG 404
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 107/232 (46%), Gaps = 13/232 (5%)
Query: 67 QLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK---RKKGHMLLVFPAWIIVCV 123
Q+FDE P + +W+ +I + + F M+ R H ++P+
Sbjct: 81 QVFDETPKKSSTTWSSVISAFAQNEAPLLALQFFRRMLNDGVRPDDH---IYPS-----A 132
Query: 124 LKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNT 183
KAC ++GK VH L K G ++ + SL++ Y K + DA +F ++ N
Sbjct: 133 TKACGFLRRSDVGKSVHCLAVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMPERNV 192
Query: 184 VVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHA 243
V W+ I + + FK+ E + N +TFSSV++ C G+ +H
Sbjct: 193 VSWSGMIYGYAQLDDGVEALTLFKQALIEDVDVNDFTFSSVIRVCSS-STFLELGKLIHG 251
Query: 244 NIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
+K+ +S +V L+ +Y KC ++ A +VF+ I +N+ WN+ML+
Sbjct: 252 LCLKMSFDSSSFVGSALISLYSKCGVIEGAYQVFDEI-PTRNLGLWNSMLIA 302
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 94/204 (46%), Gaps = 2/204 (0%)
Query: 130 TMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAK 189
+ ++ G Q+H + K G ++ +LIN Y K + + VF + + ++ W++
Sbjct: 38 SRSLRQGLQLHAHILKFGLQTIPLVSHNLINLYSKTQLPLFSLQVFDETPKKSSTTWSSV 97
Query: 190 IVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIG 249
I + F+ M + ++ + + + S KACG + + G+ +H VK G
Sbjct: 98 ISAFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGFLRRS-DVGKSVHCLAVKTG 156
Query: 250 LESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFL 309
D +V LVDMY KC + DA +F+ + ++ N+ SW+ M+ GY + VEA
Sbjct: 157 YYCDVFVGSSLVDMYAKCGEIGDARHLFDEMPER-NVVSWSGMIYGYAQLDDGVEALTLF 215
Query: 310 YLMKASGIQIQESLINDLRIACSS 333
+ + + + + CSS
Sbjct: 216 KQALIEDVDVNDFTFSSVIRVCSS 239
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 64/145 (44%), Gaps = 7/145 (4%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ ++ CG ++ A Q+FDE+P R+ W M++ A Q LF EM
Sbjct: 268 LISLYSKCGVIEGAYQVFDEIPTRNLGLWNSMLIACAQHAHTQRVFGLFEEMGNVGMKPN 327
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+ F + VL AC +E G++ L+ G SL++ G+ L++A
Sbjct: 328 FIXF-----LSVLYACSHAGLVEKGREYFSLMRDYGIEPETEHYASLVDLLGRAGKLQEA 382
Query: 172 DFVFSQLK-RHNTVVWTAKIVNNCR 195
V Q+ R VW A ++ CR
Sbjct: 383 VSVIKQMPMRPTESVWGA-LLTGCR 406
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 54/103 (52%), Gaps = 1/103 (0%)
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYI 297
G Q+HA+I+K GL++ V L+++Y K +L + +VF+ KK+ +W++++ +
Sbjct: 44 GLQLHAHILKFGLQTIPLVSHNLINLYSKTQLPLFSLQVFDE-TPKKSSTTWSSVISAFA 102
Query: 298 RNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKIN 340
+N + A +F M G++ + + AC + S +
Sbjct: 103 QNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGFLRRSDVG 145
>gi|293333352|ref|NP_001168668.1| uncharacterized protein LOC100382456 [Zea mays]
gi|223950067|gb|ACN29117.1| unknown [Zea mays]
Length = 602
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 84/287 (29%), Positives = 138/287 (48%), Gaps = 7/287 (2%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
LL N +L M V GQLD+AR LFD + + +W+ M Y+ D+ E LF+ M +
Sbjct: 188 LLVSNSVLTMLVRGGQLDSARLLFDRVENKSVVTWSAMASAYLQTGDWMEVFALFSSMRE 247
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
++ +V I +L N + K VH L K+G R L SL+N Y K
Sbjct: 248 TEQPMDSVVLANLITAAMLFG-----NNLVAKGVHALAIKVGFDRQEDLAASLVNLYSKC 302
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
L A VF L+ + ++WT+ + G+ + F M +++ N T +VL
Sbjct: 303 GNLLAAREVFDSLQWKSVIMWTSMLNGYVECGYPDEALATFDAMLCAKVEPNKATVLAVL 362
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
A G N +++ ++ + L+SD V L+DMY KC ++ A ++F+ V ++
Sbjct: 363 SA-GANLGSANVAQKVEEHVKAMELQSDLQVCTRLIDMYCKCGSIQRARKIFD-SVPNRD 420
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+A W+AM+ G+ NG EA M++ G++ + + ACS
Sbjct: 421 LAIWSAMINGHACNGEGSEAVVLFNEMQSKGVRPDAIVFTHILTACS 467
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 123/258 (47%), Gaps = 12/258 (4%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPL--RDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
L+ M+ CG+L A +LFDE P R +W MI Y + +E + +F M + +
Sbjct: 90 LVDMYAKCGRLPDAHRLFDETPCSSRTLVAWNCMISAYGRSSQVEEAVGVFNAMRRAE-- 147
Query: 110 HMLLVFPAW-IIVCVLKACVCTMNMEL-GKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
V P+ +V +L C +++ G V+GL K G ++ ++ S++ +
Sbjct: 148 ----VRPSGSTVVGLLSGCADSVSARYPGVSVYGLTIKSGLDADLLVSNSVLTMLVRGGQ 203
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
L+ A +F +++ + V W+A + G + +VF F M +S ++++ A
Sbjct: 204 LDSARLLFDRVENKSVVTWSAMASAYLQTGDWMEVFALFSSMRETEQPMDSVVLANLITA 263
Query: 228 CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
+ + + +HA +K+G + E + LV++Y KC L A VF+ + K++
Sbjct: 264 -AMLFGNNLVAKGVHALAIKVGFDRQEDLAASLVNLYSKCGNLLAAREVFDSL-QWKSVI 321
Query: 288 SWNAMLVGYIRNGLYVEA 305
W +ML GY+ G EA
Sbjct: 322 MWTSMLNGYVECGYPDEA 339
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/242 (23%), Positives = 97/242 (40%), Gaps = 11/242 (4%)
Query: 77 FNSWAVMIVGYVDVADYQECITLFA-EMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMEL 135
N W I Y C+ L+A ++ FP+ + K+C L
Sbjct: 11 LNHWNRSIQLAAASGSYGHCLRLYAGPLLAAGLRGDASTFPS-----LAKSCAALRLPGL 65
Query: 136 GKQVHGLLFKLGS--SRNISLTGSLINFYGKFRCLEDADFVFSQLK--RHNTVVWTAKIV 191
G+ VH L F G+ SR+ + SL++ Y K L DA +F + V W I
Sbjct: 66 GRAVHALAFLSGAAVSRDAFVRTSLVDMYAKCGRLPDAHRLFDETPCSSRTLVAWNCMIS 125
Query: 192 NNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLE 251
R + F M R ++ + T +L C G ++ +K GL+
Sbjct: 126 AYGRSSQVEEAVGVFNAMRRAEVRPSGSTVVGLLSGCADSVSARYPGVSVYGLTIKSGLD 185
Query: 252 SDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYL 311
+D V ++ M + L A +F+ V+ K++ +W+AM Y++ G ++E
Sbjct: 186 ADLLVSNSVLTMLVRGGQLDSARLLFDR-VENKSVVTWSAMASAYLQTGDWMEVFALFSS 244
Query: 312 MK 313
M+
Sbjct: 245 MR 246
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 64/127 (50%), Gaps = 5/127 (3%)
Query: 214 IKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIG--LESDEYVQCGLVDMYGKCRLLR 271
++ ++ TF S+ K+C + G GR +HA G + D +V+ LVDMY KC L
Sbjct: 43 LRGDASTFPSLAKSCAALRLPG-LGRAVHALAFLSGAAVSRDAFVRTSLVDMYAKCGRLP 101
Query: 272 DAERVF-ELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIA 330
DA R+F E + + +WN M+ Y R+ EA M+ + ++ S + L
Sbjct: 102 DAHRLFDETPCSSRTLVAWNCMISAYGRSSQVEEAVGVFNAMRRAEVRPSGSTVVGLLSG 161
Query: 331 CS-SISA 336
C+ S+SA
Sbjct: 162 CADSVSA 168
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%)
Query: 38 KRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECI 97
K + ++ L RL+ M+ CG + AR++FD +P RD W+ MI G+ + E +
Sbjct: 382 KAMELQSDLQVCTRLIDMYCKCGSIQRARKIFDSVPNRDLAIWSAMINGHACNGEGSEAV 441
Query: 98 TLFAEMMKRKKGHMLLVFPAWIIVC 122
LF EM + +VF + C
Sbjct: 442 VLFNEMQSKGVRPDAIVFTHILTAC 466
>gi|147773389|emb|CAN64573.1| hypothetical protein VITISV_010383 [Vitis vinifera]
Length = 672
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 85/286 (29%), Positives = 137/286 (47%), Gaps = 6/286 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N LL + +CG L A ++FDEMP +D SW MI + + E + LF EM R
Sbjct: 80 NTLLSFYGNCGGLRDAGRVFDEMPEKDLVSWNTMIGVFSVNGCWXEVLDLFGEMRLRSG- 138
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
L +V VL C + ++HG + K+G + + +L++ YGK +
Sbjct: 139 ---LRPNVVSVVSVLPVCAGVEDEVTASEIHGYVVKVGLEFQVIVGNALLDVYGKCGNVA 195
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
VF ++ N V W A I + +GH+ + F+ M E +K NS T SS L
Sbjct: 196 ALKQVFGEMVEKNLVSWNAIITSFGYKGHYRDALDMFRLMIDEGLKPNSITISSFLPVLV 255
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
++ GR++H + +++GLESD ++ L+DMY K +A VF +D KN+ SW
Sbjct: 256 ELEFF-KAGREVHGSSIRMGLESDIFIANSLIDMYAKSGHSTEASNVF-YKLDAKNVVSW 313
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
NAM+ + +N + A + M+ G ++ AC+ +
Sbjct: 314 NAMIANFAQNRFELVAVGLVRQMQDYGELPNSVTFTNVLPACARMG 359
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 123/243 (50%), Gaps = 15/243 (6%)
Query: 80 WAVMIVGYVDVADYQECITLFAEMMK---RKKGHMLLVFPAWIIVCVLKACVCTMNMELG 136
W +I GY +A + ++ +M++ R H FP VLKAC + G
Sbjct: 10 WNTLIRGY-SIAGVGGGLEVYNQMVRIGVRPDDH---TFP-----FVLKACADAFEVRKG 60
Query: 137 KQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCRE 196
++VHG + KLG ++ + +L++FYG L DA VF ++ + V W I
Sbjct: 61 REVHGXVVKLGFESDVFVGNTLLSFYGNCGGLRDAGRVFDEMPEKDLVSWNTMIGVFSVN 120
Query: 197 GHFHQVFNDFKEMG-RERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEY 255
G + +V + F EM R ++ N + SVL C GV+D+ ++H +VK+GLE
Sbjct: 121 GCWXEVLDLFGEMRLRSGLRPNVVSVVSVLPVCAGVEDE-VTASEIHGYVVKVGLEFQVI 179
Query: 256 VQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKAS 315
V L+D+YGKC + ++VF +V+ KN+ SWNA++ + G Y +A LM
Sbjct: 180 VGNALLDVYGKCGNVAALKQVFGEMVE-KNLVSWNAIITSFGYKGHYRDALDMFRLMIDE 238
Query: 316 GIQ 318
G++
Sbjct: 239 GLK 241
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 81/319 (25%), Positives = 143/319 (44%), Gaps = 9/319 (2%)
Query: 20 CTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNS 79
C +D A E+ ++ K V ++ ++ N LL ++ CG + +Q+F EM ++ S
Sbjct: 153 CAGVEDEVTASEIHGYVVK-VGLEFQVIVGNALLDVYGKCGNVAALKQVFGEMVEKNLVS 211
Query: 80 WAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQV 139
W +I + Y++ + +F M+ L + I L V + G++V
Sbjct: 212 WNAIITSFGYKGHYRDALDMFRLMIDEG-----LKPNSITISSFLPVLVELEFFKAGREV 266
Query: 140 HGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHF 199
HG ++G +I + SLI+ Y K +A VF +L N V W A I N +
Sbjct: 267 HGSSIRMGLESDIFIANSLIDMYAKSGHSTEASNVFYKLDAKNVVSWNAMIANFAQNRFE 326
Query: 200 HQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCG 259
++M NS TF++VL AC + G+++HA + +G D +V
Sbjct: 327 LVAVGLVRQMQDYGELPNSVTFTNVLPACARMGLV-RPGKEIHARSIHMGCAFDLFVSNA 385
Query: 260 LVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQI 319
L DMY K L+ A VF+ + ++ S+N ++VG + E+ M+ G++
Sbjct: 386 LTDMYAKSGHLKLARNVFDTSL--RDEVSYNILIVGXSQTSDCSESLSLFSEMQLMGLKQ 443
Query: 320 QESLINDLRIACSSISASK 338
AC++++A K
Sbjct: 444 DNVSFMGALSACANLTAIK 462
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 74/286 (25%), Positives = 123/286 (43%), Gaps = 42/286 (14%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEM-- 103
L N L M+ G L AR +FD LRD S+ ++IVG +D E ++LF+EM
Sbjct: 380 LFVSNALTDMYAKSGHLKLARNVFD-TSLRDEVSYNILIVGXSQTSDCSESLSLFSEMQL 438
Query: 104 MKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYG 163
M K+ ++ + L AC ++ GK++HG L + ++ + SL++FY
Sbjct: 439 MGLKQDNVSFM-------GALSACANLTAIKQGKEIHGFLLRKLFHIHLFVANSLLDFYT 491
Query: 164 KFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKE-MGRERIKK-NSYTF 221
K + A +F ++ + W I+ G + E M ++ ++ +S +F
Sbjct: 492 KCGRIGLARNIFDRMTNKDVASWNTMILGYGMLGELDTAIDLLTENMRKDDVESDDSVSF 551
Query: 222 SSVLKACGGVDDDGNCGRQMHANIVKIGLE--SDEYVQCGLVDMYGKCRLLRD------- 272
+VL AC G G A + GL D + L+ G CR+ +
Sbjct: 552 IAVLSAC----SHGRAGLMEEAAELIKGLPIVPDANIWGALL---GACRIYGNLELAAWA 604
Query: 273 AERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
AE +FEL + K G + EA + LMK+ G++
Sbjct: 605 AEHLFELKPEHK--------------TGRWDEANRIRELMKSRGVK 636
>gi|15232837|ref|NP_186850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75193830|sp|Q9S7F4.1|PP206_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At2g01510
gi|6091739|gb|AAF03451.1|AC010797_27 hypothetical protein [Arabidopsis thaliana]
gi|6513930|gb|AAF14834.1|AC011664_16 hypothetical protein [Arabidopsis thaliana]
gi|332640228|gb|AEE73749.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 825
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 85/283 (30%), Positives = 135/283 (47%), Gaps = 7/283 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N++L + ++ R LFDEMP DF S+ V+I Y Y+ + F EM + G
Sbjct: 289 NQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREM--QCMG 346
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
FP +L ++++G+Q+H + + + SL++ Y K E
Sbjct: 347 FDRRNFP---FATMLSIAANLSSLQMGRQLHCQALLATADSILHVGNSLVDMYAKCEMFE 403
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
+A+ +F L + TV WTA I ++G F +M ++ + TF++VLKA
Sbjct: 404 EAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASA 463
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
G+Q+HA I++ G + + GLVDMY KC ++DA +VFE + D +N SW
Sbjct: 464 SF-ASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPD-RNAVSW 521
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
NA++ + NG A M SG+Q I + ACS
Sbjct: 522 NALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACS 564
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/296 (27%), Positives = 142/296 (47%), Gaps = 7/296 (2%)
Query: 41 NIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLF 100
+ P L N LL + +LD A LF+E+P +D ++ +I GY Y E I LF
Sbjct: 179 DTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLF 238
Query: 101 AEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLIN 160
+M R+ GH F VLKA V + LG+Q+H L G SR+ S+ +++
Sbjct: 239 LKM--RQSGHQPSDF---TFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILD 293
Query: 161 FYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYT 220
FY K + + +F ++ + V + I + + + + F+EM + ++
Sbjct: 294 FYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFP 353
Query: 221 FSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELI 280
F+++L + GRQ+H + +S +V LVDMY KC + +AE +F+ +
Sbjct: 354 FATMLSIAANL-SSLQMGRQLHCQALLATADSILHVGNSLVDMYAKCEMFEEAELIFKSL 412
Query: 281 VDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+ + SW A++ GY++ GL+ K M+ S ++ +S + A +S ++
Sbjct: 413 PQRTTV-SWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFAS 467
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 122/270 (45%), Gaps = 9/270 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N ++ HV G + +AR LFD MP R +W +++ Y + + E LF +M +
Sbjct: 83 NTMISGHVKTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSS- 141
Query: 110 HMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGS--LINFYGKFR 166
P + +L C + QVH KLG N LT S L+ Y + R
Sbjct: 142 ---CTLPDHVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVR 198
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
L+ A +F ++ ++V + I ++G + + + F +M + + + +TFS VLK
Sbjct: 199 RLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLK 258
Query: 227 ACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
A G+ D G+Q+HA V G D V ++D Y K + + +F+ + + +
Sbjct: 259 AVVGLHDFA-LGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPE-LDF 316
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASG 316
S+N ++ Y + Y + F M+ G
Sbjct: 317 VSYNVVISSYSQADQYEASLHFFREMQCMG 346
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 110/246 (44%), Gaps = 9/246 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ C + A +F +P R SW +I GYV + + LF +M +G
Sbjct: 390 NSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKM----RG 445
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
L + VLKA ++ LGKQ+H + + G+ N+ L++ Y K ++
Sbjct: 446 SNLRADQS-TFATVLKASASFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIK 504
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
DA VF ++ N V W A I + G F +M ++ +S + VL AC
Sbjct: 505 DAVQVFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACS 564
Query: 230 --GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
G + G Q + I I + Y C ++D+ G+ +AE++ + + + +
Sbjct: 565 HCGFVEQGTEYFQAMSPIYGITPKKKHYA-C-MLDLLGRNGRFAEAEKLMDEMPFEPDEI 622
Query: 288 SWNAML 293
W+++L
Sbjct: 623 MWSSVL 628
>gi|357126882|ref|XP_003565116.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g13880-like [Brachypodium distachyon]
Length = 796
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 79/294 (26%), Positives = 146/294 (49%), Gaps = 15/294 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ CG + AR++FD RD SW ++ GY+ V ++E + +FA M + G
Sbjct: 153 NSLVSMYARCGDMGEARRVFDVTEERDDVSWNSLVSGYLRVGAHEEMLRVFALMRRCAMG 212
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELG--KQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
++ + V+K C G + VHG + K G ++ L ++++ Y K
Sbjct: 213 -----LNSFALGSVIKCCSGGDGSVRGIAEAVHGCVVKAGLDTDLFLASAMVDMYAKRGA 267
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCR-EGHFH-----QVFNDFKEMGRERIKKNSYTF 221
L +A +F + N VV+ A I CR E H + + + E+ ++ +TF
Sbjct: 268 LSEAVALFKSVLDPNVVVFNAMIAGLCRDEAAVHKEVVREALSLYSELQSRGMEPTEFTF 327
Query: 222 SSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIV 281
SSV++AC + D G+Q+H ++K + D+++ L+D+Y + D R F V
Sbjct: 328 SSVIRACN-LAGDIEFGKQIHGQVLKHCFQGDDFIGSALIDLYFNSACMEDGFRCFR-SV 385
Query: 282 DKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
K+++ +W AM+ G ++N L+ A + + G++ I+ + AC+S++
Sbjct: 386 PKQDVVTWTAMISGCVQNELFERALALFHELLGVGLKPDPFTISSVMNACASLA 439
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 82/308 (26%), Positives = 140/308 (45%), Gaps = 15/308 (4%)
Query: 34 NHIRKRVNIKPTLLFLNRLLLMHVSCGQLDT--ARQLFDEMPLRDFNSWAVMIVGYVDVA 91
HI R + P+L N LL + G DT AR+L DEMP R+ S+ ++I Y
Sbjct: 34 GHI-ARAHPSPSLFLRNTLLAAYCRLGAGDTHQARRLLDEMPRRNAVSFNLLIDAYSRAG 92
Query: 92 DYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRN 151
+E + F + + + + L AC ++ GK VH L G +
Sbjct: 93 QTEESLETFLHAHRAAE----VKADRFTYAAALAACSRAGRLKEGKVVHALAVLEGLAEG 148
Query: 152 ISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGR 211
+ ++ SL++ Y + + +A VF + + V W + + R G ++ F M R
Sbjct: 149 VFVSNSLVSMYARCGDMGEARRVFDVTEERDDVSWNSLVSGYLRVGAHEEMLRVFALMRR 208
Query: 212 ERIKKNSYTFSSVLKACGGVDDD-GNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLL 270
+ NS+ SV+K C G D +H +VK GL++D ++ +VDMY K L
Sbjct: 209 CAMGLNSFALGSVIKCCSGGDGSVRGIAEAVHGCVVKAGLDTDLFLASAMVDMYAKRGAL 268
Query: 271 RDAERVFELIVDKKNIASWNAMLVGYIRNGLYV------EATKFLYLMKASGIQIQESLI 324
+A +F+ ++D N+ +NAM+ G R+ V EA +++ G++ E
Sbjct: 269 SEAVALFKSVLD-PNVVVFNAMIAGLCRDEAAVHKEVVREALSLYSELQSRGMEPTEFTF 327
Query: 325 NDLRIACS 332
+ + AC+
Sbjct: 328 SSVIRACN 335
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 74/324 (22%), Positives = 138/324 (42%), Gaps = 14/324 (4%)
Query: 16 LIKECTFQKDSA-GAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL 74
+IK C+ S G E ++ + + L + ++ M+ G L A LF +
Sbjct: 221 VIKCCSGGDGSVRGIAEAVHGCVVKAGLDTDLFLASAMVDMYAKRGALSEAVALFKSVLD 280
Query: 75 RDFNSWAVMIVGY------VDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACV 128
+ + MI G V +E ++L++E+ R F + V++AC
Sbjct: 281 PNVVVFNAMIAGLCRDEAAVHKEVVREALSLYSELQSRGMEPTEFTFSS-----VIRACN 335
Query: 129 CTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTA 188
++E GKQ+HG + K + + +LI+ Y C+ED F + + + V WTA
Sbjct: 336 LAGDIEFGKQIHGQVLKHCFQGDDFIGSALIDLYFNSACMEDGFRCFRSVPKQDVVTWTA 395
Query: 189 KIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKI 248
I + F + F E+ +K + +T SSV+ AC + G QM K
Sbjct: 396 MISGCVQNELFERALALFHELLGVGLKPDPFTISSVMNACASLAVV-RTGEQMQCFATKS 454
Query: 249 GLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKF 308
G + + + MY + + A + F+ + + ++ SW+A++ + ++G +A +F
Sbjct: 455 GFDRFTAMGNSCIHMYARSGNVEAAIQRFQEM-ESHDVVSWSAIISSHAQHGCARQALQF 513
Query: 309 LYLMKASGIQIQESLINDLRIACS 332
M + + E + ACS
Sbjct: 514 FNEMVGAKVVPNEITFLGVLTACS 537
>gi|312190414|gb|ADQ43213.1| pentatricopeptide repeat protein [Eutrema parvulum]
Length = 577
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 74/279 (26%), Positives = 138/279 (49%), Gaps = 8/279 (2%)
Query: 57 VSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP 116
++ G L ARQ+FD MP RD SW +I GYV +Y E + LF+ M + +
Sbjct: 51 INSGNLRDARQVFDRMPHRDIFSWTAIIQGYVAATNYDEALILFSAMRFDPR----VSAD 106
Query: 117 AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFS 176
+++ LKAC + N+ G+ +H K ++ + +L++ Y + ++ + VFS
Sbjct: 107 TYVLSVALKACGQSSNISYGESLHAFAEKTSLLSSVFVGSALLDMYKRTGKIDKSCRVFS 166
Query: 177 QLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGN 236
++ N+V WT I + G + F +M + +++TF+ LKAC +
Sbjct: 167 EMPFRNSVTWTTIITALVQAGRHKEGLMYFSQMSKGL--SDTFTFAIALKACACL-RQVK 223
Query: 237 CGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGY 296
G+++H +++ G + +V L MY +C ++D R+FE + ++++ SW +++ Y
Sbjct: 224 YGKEIHTHVIVKGFGAILWVANSLFTMYTECGKMQDGLRLFESM-SERDVVSWTSLITAY 282
Query: 297 IRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
R G +A M+ S + E + AC+S+S
Sbjct: 283 SRIGQEEKAVNTFLHMRNSEVPSNEQTFASMFAACASLS 321
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 82/342 (23%), Positives = 140/342 (40%), Gaps = 54/342 (15%)
Query: 8 ITTDMY--TCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTA 65
++ D Y + +K C Q + E L+ ++ ++ ++ + LL M+ G++D +
Sbjct: 103 VSADTYVLSVALKACG-QSSNISYGESLHAFAEKTSLLSSVFVGSALLDMYKRTGKIDKS 161
Query: 66 RQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLK 125
++F EMP R+ +W +I V ++E + F++M K + + LK
Sbjct: 162 CRVFSEMPFRNSVTWTTIITALVQAGRHKEGLMYFSQMSKG-------LSDTFTFAIALK 214
Query: 126 ACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVV 185
AC C ++ GK++H + G + + SL Y + ++D +F + + V
Sbjct: 215 ACACLRQVKYGKEIHTHVIVKGFGAILWVANSLFTMYTECGKMQDGLRLFESMSERDVVS 274
Query: 186 WTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANI 245
WT+ I R G + N F M + N TF+S+ AC + G Q+H N+
Sbjct: 275 WTSLITAYSRIGQEEKAVNTFLHMRNSEVPSNEQTFASMFAACASLSRL-VWGEQLHGNV 333
Query: 246 VKIGLESDEYVQCGLVDMYG--KCR-----------------------LLR--------- 271
IGL V ++ MY +CR LL
Sbjct: 334 FSIGLGDSLSVSNSMMKMYSTMECRDIISWSTIIGKSGPKPTDFALASLLSVSGNMAVLE 393
Query: 272 --------DAERVFELIVDKKNIASWNAMLVGYIRNGLYVEA 305
A +VFE I D+ +I S AM+ GY +G EA
Sbjct: 394 QGRQNPTIRASKVFEEI-DRADIVSLTAMINGYAEHGESKEA 434
>gi|302809332|ref|XP_002986359.1| hypothetical protein SELMODRAFT_123910 [Selaginella moellendorffii]
gi|300145895|gb|EFJ12568.1| hypothetical protein SELMODRAFT_123910 [Selaginella moellendorffii]
Length = 516
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 93/358 (25%), Positives = 152/358 (42%), Gaps = 39/358 (10%)
Query: 8 ITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQ 67
+ D+ + +C D+ AFE L + + P ++ N L+ ++ CG++D AR
Sbjct: 60 VLGDILVQMYGKCRSLGDARDAFERLAYRDIYSGMTPDVVVHNSLVNLYAKCGRIDDARS 119
Query: 68 LFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKAC 127
LFD M +R SW MI GY + E LF + G +L F + +L AC
Sbjct: 120 LFDGMQVRSLASWNAMIAGYAHLDLGDEAFDLFRCIDLEGLGPDMLTF-----INLLGAC 174
Query: 128 VCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK----------------------- 164
++ G+ +H + LG N+ L +L++ Y K
Sbjct: 175 STPEFVDAGRNIHARVAALGLDSNLVLATALLDMYAKCGSIEGARSVFASMADNKNQNSI 234
Query: 165 ----FRC--LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
RC L++A F + R + V W + + + + M + I N+
Sbjct: 235 INMYARCGSLDEARACFDSMPRRSVVSWNVLMSGYVEQQQGEESLKLVRCMDWQGIHPNA 294
Query: 219 YTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE 278
+TFS V AC + D GR H+ IV G ++D V L+DMYG+C + A R F+
Sbjct: 295 FTFSCVATACSLLKDL-RAGRAAHSRIVASGFDTDRVVVTALMDMYGRCGSVEAARRTFD 353
Query: 279 LI----VDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+ + ++ SWNAM+ Y +G EA + M +G E + + AC+
Sbjct: 354 DMRRRCSTRVDVVSWNAMMGLYSHHGQPREALELFGEMGLAGEAGNEVSLTLVLHACT 411
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 108/254 (42%), Gaps = 21/254 (8%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N ++ M+ CG LD AR FD MP R SW V++ GYV+ +E + L M +
Sbjct: 232 NSIINMYARCGSLDEARACFDSMPRRSVVSWNVLMSGYVEQQQGEESLKLVRCMDWQG-- 289
Query: 110 HMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+ P A+ CV AC ++ G+ H + G + + +L++ YG+ +
Sbjct: 290 ----IHPNAFTFSCVATACSLLKDLRAGRAAHSRIVASGFDTDRVVVTALMDMYGRCGSV 345
Query: 169 EDADFVFSQLKRH-----NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSS 223
E A F ++R + V W A + G + F EMG N + +
Sbjct: 346 EAARRTFDDMRRRCSTRVDVVSWNAMMGLYSHHGQPREALELFGEMGLAGEAGNEVSLTL 405
Query: 224 VLKAC--GGVDDDG--NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFEL 279
VL AC G+ D R + A IV S E+ C +VD+ + L AE V
Sbjct: 406 VLHACTHAGLVADAVEALARGVEAGIVP----SREHYAC-VVDVLARAGKLEVAEEVMNN 460
Query: 280 IVDKKNIASWNAML 293
+ + I +W +L
Sbjct: 461 MPVEPGIGAWKCLL 474
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 63/152 (41%), Gaps = 39/152 (25%)
Query: 220 TFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFEL 279
T++S+L+ CG G+Q+H++++ GL+ D+ + LV MYGKCR L DA FE
Sbjct: 26 TYASLLRQCG-RSRALWAGKQVHSHMIARGLDRDKVLGDILVQMYGKCRSLGDARDAFER 84
Query: 280 IVDK--------------------------------------KNIASWNAMLVGYIRNGL 301
+ + +++ASWNAM+ GY L
Sbjct: 85 LAYRDIYSGMTPDVVVHNSLVNLYAKCGRIDDARSLFDGMQVRSLASWNAMIAGYAHLDL 144
Query: 302 YVEATKFLYLMKASGIQIQESLINDLRIACSS 333
EA + G+ +L ACS+
Sbjct: 145 GDEAFDLFRCIDLEGLGPDMLTFINLLGACST 176
>gi|356523677|ref|XP_003530462.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g02330-like [Glycine max]
Length = 852
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 81/306 (26%), Positives = 144/306 (47%), Gaps = 12/306 (3%)
Query: 29 AFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYV 88
AF++ + + R ++ N ++ + G + A+ LFD MP RD SW ++ Y+
Sbjct: 60 AFKVFDRMPHR-----DVISWNTMIFGYAEIGNMGFAQSLFDTMPERDVVSWNSLLSCYL 114
Query: 89 DVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGS 148
++ I +F M K H F VLKAC + LG QVH L ++G
Sbjct: 115 HNGVNRKSIEIFVRMRSLKIPHDYATFSV-----VLKACSGIEDYGLGLQVHCLAIQMGF 169
Query: 149 SRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKE 208
++ +L++ Y K + L+ A +F ++ N V W+A I + F + FK+
Sbjct: 170 ENDVVTGSALVDMYSKCKKLDGAFRIFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKD 229
Query: 209 MGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCR 268
M + + + T++SV ++C G+ G Q+H + +K D + +DMY KC
Sbjct: 230 MLKVGMGVSQSTYASVFRSCAGL-SAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCD 288
Query: 269 LLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLR 328
+ DA +VF + + S+NA++VGY R ++A + ++ + + E ++
Sbjct: 289 RMSDAWKVFNTLPNPPR-QSYNAIIVGYARQDQGLKALEIFQSLQRTYLSFDEISLSGAL 347
Query: 329 IACSSI 334
ACS I
Sbjct: 348 TACSVI 353
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 139/285 (48%), Gaps = 7/285 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N +L M+ CG L A +FD+M RD SW +I + + + ++LF M++
Sbjct: 379 NTILDMYGKCGALVEACTIFDDMERRDAVSWNAIIAAHEQNEEIVKTLSLFVSMLRSTME 438
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ + V+KAC + G ++HG + K G + + +L++ YGK L
Sbjct: 439 PDDFTYGS-----VVKACAGQQALNYGMEIHGRIVKSGMGLDWFVGSALVDMYGKCGMLM 493
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
+A+ + +L+ TV W + I + F +M + +++T+++VL C
Sbjct: 494 EAEKIHDRLEEKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGVIPDNFTYATVLDVCA 553
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ G+Q+HA I+K+ L SD Y+ LVDMY KC ++D+ +FE K++ +W
Sbjct: 554 NMATI-ELGKQIHAQILKLNLHSDVYIASTLVDMYSKCGNMQDSRLMFEK-TPKRDYVTW 611
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
+AM+ Y +G +A K M+ ++ ++ + AC+ +
Sbjct: 612 SAMICAYAYHGHGEQAIKLFEEMQLLNVKPNHTIFISVLRACAHM 656
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/265 (28%), Positives = 130/265 (49%), Gaps = 7/265 (2%)
Query: 53 LLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHML 112
L M+ C ++ A ++F+ +P S+ +IVGY + + +F + +
Sbjct: 281 LDMYAKCDRMSDAWKVFNTLPNPPRQSYNAIIVGYARQDQGLKALEIFQSLQRT-----Y 335
Query: 113 LVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDAD 172
L F + L AC G Q+HGL K G NI + ++++ YGK L +A
Sbjct: 336 LSFDEISLSGALTACSVIKGHLEGIQLHGLAVKCGLGFNICVANTILDMYGKCGALVEAC 395
Query: 173 FVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVD 232
+F ++R + V W A I + + + + F M R ++ + +T+ SV+KAC G
Sbjct: 396 TIFDDMERRDAVSWNAIIAAHEQNEEIVKTLSLFVSMLRSTMEPDDFTYGSVVKACAG-Q 454
Query: 233 DDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAM 292
N G ++H IVK G+ D +V LVDMYGKC +L +AE++ + + ++K SWN++
Sbjct: 455 QALNYGMEIHGRIVKSGMGLDWFVGSALVDMYGKCGMLMEAEKIHDRL-EEKTTVSWNSI 513
Query: 293 LVGYIRNGLYVEATKFLYLMKASGI 317
+ G+ A ++ M G+
Sbjct: 514 ISGFSSQKQSENAQRYFSQMLEMGV 538
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 81/336 (24%), Positives = 156/336 (46%), Gaps = 8/336 (2%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCG 60
M +L +P ++ ++K C+ +D ++ + + ++ + ++ + L+ M+ C
Sbjct: 129 MRSLKIPHDYATFSVVLKACSGIEDYGLGLQV-HCLAIQMGFENDVVTGSALVDMYSKCK 187
Query: 61 QLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWII 120
+LD A ++F EMP R+ W+ +I GYV + E + LF +M+K G + +
Sbjct: 188 KLDGAFRIFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYAS--- 244
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
V ++C +LG Q+HG K + + + + ++ Y K + DA VF+ L
Sbjct: 245 --VFRSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCDRMSDAWKVFNTLPN 302
Query: 181 HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQ 240
+ A IV R+ + F+ + R + + + S L AC + G Q
Sbjct: 303 PPRQSYNAIIVGYARQDQGLKALEIFQSLQRTYLSFDEISLSGALTACSVIKGHLE-GIQ 361
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
+H VK GL + V ++DMYGKC L +A +F+ + ++++ SWNA++ + +N
Sbjct: 362 LHGLAVKCGLGFNICVANTILDMYGKCGALVEACTIFDDM-ERRDAVSWNAIIAAHEQNE 420
Query: 301 LYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
V+ M S ++ + + AC+ A
Sbjct: 421 EIVKTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQA 456
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 108/248 (43%), Gaps = 33/248 (13%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
+L+ C + GKQ H + I + L+ FY K + A VF ++ +
Sbjct: 12 ILQKCSNLKALNPGKQAHAQMIVTSFVPTIYVANCLVQFYCKSSNMNYAFKVFDRMPHRD 71
Query: 183 TVVWTAKIVNNCREGH--FHQVFND-----------------------------FKEMGR 211
+ W I G+ F Q D F M
Sbjct: 72 VISWNTMIFGYAEIGNMGFAQSLFDTMPERDVVSWNSLLSCYLHNGVNRKSIEIFVRMRS 131
Query: 212 ERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLR 271
+I + TFS VLKAC G++D G G Q+H +++G E+D LVDMY KC+ L
Sbjct: 132 LKIPHDYATFSVVLKACSGIEDYG-LGLQVHCLAIQMGFENDVVTGSALVDMYSKCKKLD 190
Query: 272 DAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
A R+F + ++N+ W+A++ GY++N ++E K M G+ + +S + +C
Sbjct: 191 GAFRIFREM-PERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVFRSC 249
Query: 332 SSISASKI 339
+ +SA K+
Sbjct: 250 AGLSAFKL 257
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/285 (24%), Positives = 129/285 (45%), Gaps = 14/285 (4%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
Y ++K C Q+ E+ I K + + L+ M+ CG L A ++ D +
Sbjct: 444 YGSVVKACAGQQALNYGMEIHGRIVKS-GMGLDWFVGSALVDMYGKCGMLMEAEKIHDRL 502
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN 132
+ SW +I G+ + F++M++ M ++ + VL C
Sbjct: 503 EEKTTVSWNSIISGFSSQKQSENAQRYFSQMLE-----MGVIPDNFTYATVLDVCANMAT 557
Query: 133 MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192
+ELGKQ+H + KL ++ + +L++ Y K ++D+ +F + + + V W+A I
Sbjct: 558 IELGKQIHAQILKLNLHSDVYIASTLVDMYSKCGNMQDSRLMFEKTPKRDYVTWSAMICA 617
Query: 193 NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC---GGVDDDGNCGRQMHANIVKIG 249
GH Q F+EM +K N F SVL+AC G VD + + M ++ G
Sbjct: 618 YAYHGHGEQAIKLFEEMQLLNVKPNHTIFISVLRACAHMGYVDKGLHYFQIMQSH---YG 674
Query: 250 LESD-EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
L+ E+ C +VD+ G+ + +A ++ E + + + W +L
Sbjct: 675 LDPHMEHYSC-MVDLLGRSDQVNEALKLIESMHFEADDVIWRTLL 718
>gi|48475127|gb|AAT44196.1| hypothetical protein, contains pentatricopeptide (PPR) repeat
[Oryza sativa Japonica Group]
gi|51854327|gb|AAU10708.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 634
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 79/265 (29%), Positives = 122/265 (46%), Gaps = 6/265 (2%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
++ + T N L ++ C +D A M RD +W +I YV +E I
Sbjct: 151 KLGLDSTPYVANTLATLYARCSDVDRALAAVSRMGTRDVAAWTTVISAYVQTGRAKEAIE 210
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
F M+ R++ + + V+ AC + LG+Q+H + G + S+ SL
Sbjct: 211 AFVRML-REESSVAASPNEYTYAAVIAACADIAWVCLGEQLHAQAARKGFACARSVANSL 269
Query: 159 INFYGKFR-CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRER--IK 215
+ Y + CL AD VF + + V W+A I +EG F F+EM +
Sbjct: 270 VTLYTRAAGCLSAADAVFRESVVKDVVSWSAIISGYAQEGLAEDAFALFREMRHHSGCPR 329
Query: 216 KNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAER 275
N +T +S+L C + GRQ+H V GLE ++ L+DMYGK + DA+
Sbjct: 330 PNEFTLASLLSVCATAASL-DAGRQLHTLAVAAGLEHHAMIRSALIDMYGKSGSMLDADI 388
Query: 276 VFELIVDKKNIASWNAMLVGYIRNG 300
VF V K ++ SW AM+VGY +G
Sbjct: 389 VFSHRV-KDDVVSWTAMIVGYAEHG 412
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 70/260 (26%), Positives = 119/260 (45%), Gaps = 33/260 (12%)
Query: 50 NRLLLMHV-SCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
N L+ ++ + G L A +F E ++D SW+ +I GY ++ LF EM +
Sbjct: 267 NSLVTLYTRAAGCLSAADAVFRESVVKDVVSWSAIISGYAQEGLAEDAFALFREM----R 322
Query: 109 GHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
H P + + +L C +++ G+Q+H L G + + +LI+ YGK
Sbjct: 323 HHSGCPRPNEFTLASLLSVCATAASLDAGRQLHTLAVAAGLEHHAMIRSALIDMYGKSGS 382
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
+ DAD VFS + + V WTA IV GH + F+EM +K + TF VL A
Sbjct: 383 MLDADIVFSHRVKDDVVSWTAMIVGYAEHGHSKKALELFQEMCHVGLKPDHVTFIGVLNA 442
Query: 228 CGGVDDDGNCGRQMHANIVKIGL-------------ESDEYVQCGLVDMYGKCRLLRDAE 274
C C HA V++GL + E+ C +VD+ G+ + +AE
Sbjct: 443 C--------C----HAGEVELGLRYLNEMNQIYGLYPAKEHYGC-VVDLLGRAGRINEAE 489
Query: 275 RVF-ELIVDKKNIASWNAML 293
+ ++ ++++ W ++L
Sbjct: 490 ELIGKIAANERDGVVWTSLL 509
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 78/320 (24%), Positives = 129/320 (40%), Gaps = 26/320 (8%)
Query: 7 PITTDMYTCLIKECTFQKDSAGAFELLNHIRK------RVNIKPTLLFLNRLLLMHVSCG 60
P + + + K C D+ L H R + ++ L ++ G
Sbjct: 16 PADPFVLSLVFKSCAAAADA----RFLPHAASLHAFAVRSSAVSSVFVATALADVYAKAG 71
Query: 61 QLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWII 120
L A ++FDEMP ++ SW ++ E + F+EM R G + ++
Sbjct: 72 CLGLALKVFDEMPHKNVVSWTTLVASLTRAGRRHEALRRFSEM--RASG---VHCDSYAY 126
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
L AC + G++VH KLG + +L Y + ++ A S++
Sbjct: 127 AAALTACADAGLLSRGREVHAFCAKLGLDSTPYVANTLATLYARCSDVDRALAAVSRMGT 186
Query: 181 HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRER----IKKNSYTFSSVLKACGGVDDDGN 236
+ WT I + G + F M RE N YT+++V+ AC D
Sbjct: 187 RDVAAWTTVISAYVQTGRAKEAIEAFVRMLREESSVAASPNEYTYAAVIAAC--ADIAWV 244
Query: 237 C-GRQMHANIVKIGLESDEYVQCGLVDMYGKCR-LLRDAERVF-ELIVDKKNIASWNAML 293
C G Q+HA + G V LV +Y + L A+ VF E +V K++ SW+A++
Sbjct: 245 CLGEQLHAQAARKGFACARSVANSLVTLYTRAAGCLSAADAVFRESVV--KDVVSWSAII 302
Query: 294 VGYIRNGLYVEATKFLYLMK 313
GY + GL +A M+
Sbjct: 303 SGYAQEGLAEDAFALFREMR 322
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 97/221 (43%), Gaps = 11/221 (4%)
Query: 97 ITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMEL---GKQVHGLLFKLGSSRNIS 153
+ LF+ + R L +++ V K+C + +H + + ++
Sbjct: 1 MALFSRL--RASSPPLAPADPFVLSLVFKSCAAAADARFLPHAASLHAFAVRSSAVSSVF 58
Query: 154 LTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRER 213
+ +L + Y K CL A VF ++ N V WT + + R G H+ F EM
Sbjct: 59 VATALADVYAKAGCLGLALKVFDEMPHKNVVSWTTLVASLTRAGRRHEALRRFSEMRASG 118
Query: 214 IKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDA 273
+ +SY +++ L AC GR++HA K+GL+S YV L +Y +C D
Sbjct: 119 VHCDSYAYAAALTACADAGLLSR-GREVHAFCAKLGLDSTPYVANTLATLYARC---SDV 174
Query: 274 ERVFELI--VDKKNIASWNAMLVGYIRNGLYVEATKFLYLM 312
+R + + +++A+W ++ Y++ G EA + M
Sbjct: 175 DRALAAVSRMGTRDVAAWTTVISAYVQTGRAKEAIEAFVRM 215
Score = 45.1 bits (105), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 50/119 (42%), Gaps = 3/119 (2%)
Query: 202 VFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDG--NCGRQMHANIVKIGLESDEYVQCG 259
+F+ + + + S V K+C D +HA V+ S +V
Sbjct: 3 LFSRLRASSPPLAPADPFVLSLVFKSCAAAADARFLPHAASLHAFAVRSSAVSSVFVATA 62
Query: 260 LVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
L D+Y K L A +VF+ + KN+ SW ++ R G EA + M+ASG+
Sbjct: 63 LADVYAKAGCLGLALKVFDEM-PHKNVVSWTTLVASLTRAGRRHEALRRFSEMRASGVH 120
>gi|326490736|dbj|BAJ90035.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326511421|dbj|BAJ87724.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 801
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 86/314 (27%), Positives = 146/314 (46%), Gaps = 10/314 (3%)
Query: 8 ITTDMYTCL--IKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTA 65
+ +D+ T L + + +D +L ++ K ++ ++ N L++M+ CG + TA
Sbjct: 307 VPSDVVTFLSAVTAASQSQDVRLGQQLHGYLMKGMHSTLPVILGNALVVMYSRCGNVQTA 366
Query: 66 RQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLK 125
+LFD +P +D SW MI +V E + L +M K + + VL
Sbjct: 367 FELFDRLPEKDIVSWNTMITAFVQNDFDLEGLLLVYQMQKSG-----FIPDTVTLTAVLS 421
Query: 126 ACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR-HNTV 184
A T ++++GKQ HG L + G L LI+ Y K ++ A VF + V
Sbjct: 422 AASNTGDLQIGKQSHGYLIRHGIEGE-GLESYLIDMYSKSGRIDMAQRVFDGYGNDRDEV 480
Query: 185 VWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHAN 244
W A I + G Q F+ M ++ S T +SVL AC V G+Q+H+
Sbjct: 481 TWNAMIAGYTQSGQPEQAVLQFRAMIEAGVEPTSVTLASVLPACDPVGGGVCAGKQIHSF 540
Query: 245 IVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVE 304
++ L+++ +V LVDMY KC + AE VF + +K + ++ M+ G ++G
Sbjct: 541 ALRHSLDTNVFVGTALVDMYSKCGEISAAENVFGGMTEKSTV-TYTTMISGLGQHGFGER 599
Query: 305 ATKFLYLMKASGIQ 318
A Y M+ G++
Sbjct: 600 ALSLFYSMRDKGLK 613
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 81/315 (25%), Positives = 142/315 (45%), Gaps = 20/315 (6%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKP-TLLFLNRLLLMHVSC-----GQLDTAR 66
Y+C + C + + H+ +R P T + N LL ++ SC G +D R
Sbjct: 103 YSCALTACARSRRLRLGRSVHAHLLRRARSLPDTAVLRNSLLNLYASCARHRRGGVDVVR 162
Query: 67 QLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKA 126
+LFD MP ++ SW + YV E + +FA M++ V P + +
Sbjct: 163 RLFDAMPKKNVVSWNTLFGWYVKTGRPDEALEMFARMLEDG------VRPTPVSFVNVFP 216
Query: 127 CVCTMNMELGKQVHGLLFKLGSS--RNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTV 184
+ + ++GLL K G ++ + S I + + ++ A VF + + N
Sbjct: 217 AAGSGDPSWPFLLYGLLIKHGVEYVNDLFVVSSAIGMFSEISDVQSARMVFDRAGKKNIE 276
Query: 185 VWTAKIVNNCREGHFHQVFNDFKE-MGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHA 243
VW I + G F Q + F + +G + + + TF S + A D G+Q+H
Sbjct: 277 VWNTMITGYVQNGQFSQAMDLFIQILGSKEVPSDVVTFLSAVTAA-SQSQDVRLGQQLHG 335
Query: 244 NIVKIGLESDEYVQCG--LVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGL 301
++K G+ S V G LV MY +C ++ A +F+ + +K+I SWN M+ +++N
Sbjct: 336 YLMK-GMHSTLPVILGNALVVMYSRCGNVQTAFELFDRL-PEKDIVSWNTMITAFVQNDF 393
Query: 302 YVEATKFLYLMKASG 316
+E +Y M+ SG
Sbjct: 394 DLEGLLLVYQMQKSG 408
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 75/312 (24%), Positives = 145/312 (46%), Gaps = 33/312 (10%)
Query: 42 IKPTLLFLNRLLLMHVSCG------QLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQE 95
IK + ++N L ++ + G + +AR +FD ++ W MI GYV + +
Sbjct: 234 IKHGVEYVNDLFVVSSAIGMFSEISDVQSARMVFDRAGKKNIEVWNTMITGYVQNGQFSQ 293
Query: 96 CITLFAEMMKRKKGHMLLVFPAWII--VCVLKACVCTMNMELGKQVHGLLFK-LGSSRNI 152
+ LF +++ K+ P+ ++ + + A + ++ LG+Q+HG L K + S+ +
Sbjct: 294 AMDLFIQILGSKE------VPSDVVTFLSAVTAASQSQDVRLGQQLHGYLMKGMHSTLPV 347
Query: 153 SLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFK----- 207
L +L+ Y + ++ A +F +L + V W I F Q NDF
Sbjct: 348 ILGNALVVMYSRCGNVQTAFELFDRLPEKDIVSWNTMITA------FVQ--NDFDLEGLL 399
Query: 208 ---EMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMY 264
+M + ++ T ++VL A D G+Q H +++ G+E E ++ L+DMY
Sbjct: 400 LVYQMQKSGFIPDTVTLTAVLSAASNTGDL-QIGKQSHGYLIRHGIEG-EGLESYLIDMY 457
Query: 265 GKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLI 324
K + A+RVF+ + ++ +WNAM+ GY ++G +A M +G++ +
Sbjct: 458 SKSGRIDMAQRVFDGYGNDRDEVTWNAMIAGYTQSGQPEQAVLQFRAMIEAGVEPTSVTL 517
Query: 325 NDLRIACSSISA 336
+ AC +
Sbjct: 518 ASVLPACDPVGG 529
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 114/255 (44%), Gaps = 27/255 (10%)
Query: 52 LLLMHVSCGQLDTARQLFDEMP-LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGH 110
L+ M+ G++D A+++FD RD +W MI GY ++ + F M++
Sbjct: 453 LIDMYSKSGRIDMAQRVFDGYGNDRDEVTWNAMIAGYTQSGQPEQAVLQFRAMIEAG--- 509
Query: 111 MLLVFPAWI-IVCVLKAC------VCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYG 163
V P + + VL AC VC GKQ+H + N+ + +L++ Y
Sbjct: 510 ---VEPTSVTLASVLPACDPVGGGVCA-----GKQIHSFALRHSLDTNVFVGTALVDMYS 561
Query: 164 KFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSS 223
K + A+ VF + +TV +T I + G + + F M + +K ++ TF +
Sbjct: 562 KCGEISAAENVFGGMTEKSTVTYTTMISGLGQHGFGERALSLFYSMRDKGLKPDAVTFLA 621
Query: 224 VLKAC---GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELI 280
+ AC G VD+ G ++ ++ GL + C +VD+ K + +A E +
Sbjct: 622 AISACNYSGLVDE----GLSLYRSMETFGLAATPQHHCCIVDLLAKAGRVDEAYDFVESL 677
Query: 281 VDKKN-IASWNAMLV 294
+ N IA W ++L
Sbjct: 678 GEDGNFIAIWGSLLA 692
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 63/260 (24%), Positives = 111/260 (42%), Gaps = 22/260 (8%)
Query: 60 GQLDTARQLF-DEMPLRDFNSWA-VMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPA 117
G+L+ AR+L D +P V+++ YV A + L+A + H P
Sbjct: 43 GRLEHARRLLLDALPRPPPTLLCNVLLIAYVAGALPDHALRLYALL-----NHAARPAPR 97
Query: 118 ---WIIVCVLKACVCTMNMELGKQVHGLLFKLGSS--RNISLTGSLINFYG-----KFRC 167
+ C L AC + + LG+ VH L + S L SL+N Y +
Sbjct: 98 SDHYTYSCALTACARSRRLRLGRSVHAHLLRRARSLPDTAVLRNSLLNLYASCARHRRGG 157
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
++ +F + + N V W + G + F M + ++ +F +V A
Sbjct: 158 VDVVRRLFDAMPKKNVVSWNTLFGWYVKTGRPDEALEMFARMLEDGVRPTPVSFVNVFPA 217
Query: 228 CGGVDDDGNCGRQMHANIVKIGLE--SDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
G D + ++ ++K G+E +D +V + M+ + ++ A VF+ KKN
Sbjct: 218 AG--SGDPSWPFLLYGLLIKHGVEYVNDLFVVSSAIGMFSEISDVQSARMVFDR-AGKKN 274
Query: 286 IASWNAMLVGYIRNGLYVEA 305
I WN M+ GY++NG + +A
Sbjct: 275 IEVWNTMITGYVQNGQFSQA 294
Score = 38.9 bits (89), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 61/143 (42%), Gaps = 10/143 (6%)
Query: 198 HFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIG--LESDEY 255
H +++ R + + YT+S L AC R +HA++++ L
Sbjct: 80 HALRLYALLNHAARPAPRSDHYTYSCALTACARSRRLRLG-RSVHAHLLRRARSLPDTAV 138
Query: 256 VQCGLVDMYGKCRLLRDA-----ERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLY 310
++ L+++Y C R R+F+ + KKN+ SWN + Y++ G EA +
Sbjct: 139 LRNSLLNLYASCARHRRGGVDVVRRLFDAM-PKKNVVSWNTLFGWYVKTGRPDEALEMFA 197
Query: 311 LMKASGIQIQE-SLINDLRIACS 332
M G++ S +N A S
Sbjct: 198 RMLEDGVRPTPVSFVNVFPAAGS 220
>gi|413954823|gb|AFW87472.1| hypothetical protein ZEAMMB73_326917 [Zea mays]
Length = 610
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 81/273 (29%), Positives = 133/273 (48%), Gaps = 11/273 (4%)
Query: 43 KPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAE 102
+P L RL++M+ CG L+ A + D MP R+ SW MI GY E LF
Sbjct: 67 RPALYLATRLVIMYARCGALEDAHNVLDGMPERNVVSWTAMISGYSQNERPAEAWDLFIM 126
Query: 103 MMKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELG--KQVHGLLFKLGSSRNISLTGSLI 159
M++ P + + VL +C + + KQVH K ++ + SL+
Sbjct: 127 MLRAG------CEPNEFTLASVLTSCTGSQGIHQHQIKQVHAFAIKKNFELHMFVGSSLL 180
Query: 160 NFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSY 219
+ Y + +++A VF L + V +T + R G + N F+++ E ++ N
Sbjct: 181 DMYARSENIQEARRVFDMLPARDVVSYTTILSGYTRLGLDEEALNLFRQLYNEGMQCNQV 240
Query: 220 TFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFEL 279
TFS +L A G+ + G+Q+H I++ L +Q L+DMY KC L + RVF+
Sbjct: 241 TFSVLLNALSGL-SSMDYGKQVHGLILRRELPFFMALQNSLIDMYSKCGKLLYSRRVFDN 299
Query: 280 IVDKKNIASWNAMLVGYIRNGLYVEATKFLYLM 312
+ ++++ SWNAML+GY R+G+ E + M
Sbjct: 300 M-PERSVVSWNAMLMGYGRHGMAYEVVQLFRFM 331
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 100/216 (46%), Gaps = 2/216 (0%)
Query: 122 CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH 181
+ CV + G+QVH + G + L L+ Y + LEDA V +
Sbjct: 40 AAITECVGRRALREGRQVHARMVTAGYRPALYLATRLVIMYARCGALEDAHNVLDGMPER 99
Query: 182 NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDD-DGNCGRQ 240
N V WTA I + + ++ F M R + N +T +SVL +C G + +Q
Sbjct: 100 NVVSWTAMISGYSQNERPAEAWDLFIMMLRAGCEPNEFTLASVLTSCTGSQGIHQHQIKQ 159
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
+HA +K E +V L+DMY + +++A RVF+++ +++ S+ +L GY R G
Sbjct: 160 VHAFAIKKNFELHMFVGSSLLDMYARSENIQEARRVFDML-PARDVVSYTTILSGYTRLG 218
Query: 301 LYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
L EA + G+Q + + L A S +S+
Sbjct: 219 LDEEALNLFRQLYNEGMQCNQVTFSVLLNALSGLSS 254
Score = 42.4 bits (98), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
N L+ M+ CG+L +R++FD MP R SW M++GY E + LF M + K
Sbjct: 278 NSLIDMYSKCGKLLYSRRVFDNMPERSVVSWNAMLMGYGRHGMAYEVVQLFRFMCDKVK 336
>gi|297736926|emb|CBI26127.3| unnamed protein product [Vitis vinifera]
Length = 603
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 85/292 (29%), Positives = 133/292 (45%), Gaps = 18/292 (6%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL + S G D AR +FD MP + +W +MI GY D + C+ LF +M +
Sbjct: 143 LLFAYTSSGLFDVARVVFDGMPKKVEIAWNIMISGYGQCGDVELCLGLFKKMREDS---- 198
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGS-----------LIN 160
L W ++ A G +HG + K G + + S +I+
Sbjct: 199 -LQPDQWTFSALVNALCELQEPSYGYMMHGFIIKSGWDDVMKVFESIGILTQVSWNAMID 257
Query: 161 FYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYT 220
+ K +A VF N V WT+ I R GH Q + F +M I+ + +T
Sbjct: 258 AHMKIGDTHEAFLVFQLAPEKNVVSWTSMITGYARNGHGEQALSFFVKMMENHIQPDDFT 317
Query: 221 FSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELI 280
F +VL AC + G+ G+ +H +I+ G + V GLV+MY KC ++ + F+ I
Sbjct: 318 FGAVLHACSSLATLGH-GKMIHGSIIHYGFHAYVDVGNGLVNMYAKCGDIQGSNTAFKEI 376
Query: 281 VDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+ K++ SWNAML G +G +A + M ASG++ + L + CS
Sbjct: 377 LG-KDLVSWNAMLFGLGMHGHATQALELYEEMVASGMKPDKVTFIGLLMTCS 427
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 79/318 (24%), Positives = 133/318 (41%), Gaps = 49/318 (15%)
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI 119
G++ +AR+LFDEMP +D +W M+ Y + +Q+ + LF M F A
Sbjct: 19 GRITSARRLFDEMPHKDTVAWNAMLASYSQLGLHQQALCLFHHMRIANSRPDRFTFTA-- 76
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
L AC + G ++H + G ++ + SLI+ YGK A VF ++
Sbjct: 77 ---TLSACAGLGELRRGMKIHAQVVVSGCQSSLPVGNSLIDMYGKCLSATSARRVFEEMS 133
Query: 180 RHNTVVWTAKIVNNCREGHF---HQVFND----------------------------FKE 208
N V W + + G F VF+ FK+
Sbjct: 134 IMNEVSWCSLLFAYTSSGLFDVARVVFDGMPKKVEIAWNIMISGYGQCGDVELCLGLFKK 193
Query: 209 MGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLES-----------DEYVQ 257
M + ++ + +TFS+++ A + + + G MH I+K G + +
Sbjct: 194 MREDSLQPDQWTFSALVNALCELQEP-SYGYMMHGFIIKSGWDDVMKVFESIGILTQVSW 252
Query: 258 CGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGI 317
++D + K +A VF+L +KN+ SW +M+ GY RNG +A F M + I
Sbjct: 253 NAMIDAHMKIGDTHEAFLVFQL-APEKNVVSWTSMITGYARNGHGEQALSFFVKMMENHI 311
Query: 318 QIQESLINDLRIACSSIS 335
Q + + ACSS++
Sbjct: 312 QPDDFTFGAVLHACSSLA 329
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 99/231 (42%), Gaps = 9/231 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N ++ H+ G A +F P ++ SW MI GY ++ ++ F +MM+
Sbjct: 253 NAMIDAHMKIGDTHEAFLVFQLAPEKNVVSWTSMITGYARNGHGEQALSFFVKMMENHIQ 312
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
F A VL AC + GK +HG + G + + L+N Y K ++
Sbjct: 313 PDDFTFGA-----VLHACSSLATLGHGKMIHGSIIHYGFHAYVDVGNGLVNMYAKCGDIQ 367
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC- 228
++ F ++ + V W A + GH Q ++EM +K + TF +L C
Sbjct: 368 GSNTAFKEILGKDLVSWNAMLFGLGMHGHATQALELYEEMVASGMKPDKVTFIGLLMTCS 427
Query: 229 -GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE 278
G+ + G + ++ + E+ E+V C +VD+ G+ L A + +
Sbjct: 428 HSGLIEKGQALFESMVSVYGLSQET-EHVVC-MVDLLGRGGYLAQARELVD 476
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 71/148 (47%), Gaps = 2/148 (1%)
Query: 155 TGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERI 214
T S I K + A +F ++ +TV W A + + + G Q F M
Sbjct: 8 TTSKIVALAKLGRITSARRLFDEMPHKDTVAWNAMLASYSQLGLHQQALCLFHHMRIANS 67
Query: 215 KKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAE 274
+ + +TF++ L AC G+ + G ++HA +V G +S V L+DMYGKC A
Sbjct: 68 RPDRFTFTATLSACAGLGELRR-GMKIHAQVVVSGCQSSLPVGNSLIDMYGKCLSATSAR 126
Query: 275 RVFELIVDKKNIASWNAMLVGYIRNGLY 302
RVFE + N SW ++L Y +GL+
Sbjct: 127 RVFEEM-SIMNEVSWCSLLFAYTSSGLF 153
>gi|357441891|ref|XP_003591223.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355480271|gb|AES61474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 606
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 75/284 (26%), Positives = 138/284 (48%), Gaps = 9/284 (3%)
Query: 50 NRLLLMHVSC-GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
N L+ M+ +C +D AR +F+++ ++ SW +I GY D + +F +M +
Sbjct: 147 NALMDMYATCCDSMDNARLVFEDIGTKNAVSWTTLITGYTHRRDAFGGLRVFRQMFMEEG 206
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
F + AC + LGKQVH + G N+ + ++++ Y + RC
Sbjct: 207 ELSPFSFS-----IAVSACASIGSSNLGKQVHAAVINHGFESNLPVMNAILDMYCRCRCA 261
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+A +F ++ + +T+ W ++ ++ F +M E N +TF+SV+ AC
Sbjct: 262 SEAKQLFGEMTQKDTITWNT-LIAGFETLDSYESLCIFSQMVSEGFSPNCFTFTSVIAAC 320
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
+ CG+Q+H I+ GL+++ + L+DMY KC + D+ ++F + N+ S
Sbjct: 321 ANL-AILYCGQQLHGGIIHRGLDNNLELSNALIDMYAKCGNVADSHKIFSGM-RHTNLVS 378
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
W +M++GY +G EA M SGI+ + + + ACS
Sbjct: 379 WTSMMIGYGAHGHGKEAVDLFNEMVGSGIKPDKIVFMAVLSACS 422
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/240 (30%), Positives = 117/240 (48%), Gaps = 11/240 (4%)
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AW 118
G + A LFDEMP RD +W MI GY + +F M++ V P A+
Sbjct: 55 GSFEEAHTLFDEMPHRDVIAWTSMITGYTSCNHHSRAWNVFTNMLRDG------VKPNAF 108
Query: 119 IIVCVLKACVCTMNMELGKQVHGLLFKLGS-SRNISLTGSLINFYGK-FRCLEDADFVFS 176
+ VLKAC + GK VHGL K+G+ +I + +L++ Y +++A VF
Sbjct: 109 TVSAVLKACKSLKALLCGKLVHGLAIKIGTQGSSIYVDNALMDMYATCCDSMDNARLVFE 168
Query: 177 QLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGN 236
+ N V WT I F++M E + + ++FS + AC + N
Sbjct: 169 DIGTKNAVSWTTLITGYTHRRDAFGGLRVFRQMFMEEGELSPFSFSIAVSACASI-GSSN 227
Query: 237 CGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGY 296
G+Q+HA ++ G ES+ V ++DMY +CR +A+++F + K I +WN ++ G+
Sbjct: 228 LGKQVHAAVINHGFESNLPVMNAILDMYCRCRCASEAKQLFGEMTQKDTI-TWNTLIAGF 286
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 122/253 (48%), Gaps = 10/253 (3%)
Query: 43 KPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAE 102
+ L +N +L M+ C A+QLF EM +D +W +I G+ + D E + +F++
Sbjct: 242 ESNLPVMNAILDMYCRCRCASEAKQLFGEMTQKDTITWNTLIAGF-ETLDSYESLCIFSQ 300
Query: 103 MMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFY 162
M+ F + V+ AC + G+Q+HG + G N+ L+ +LI+ Y
Sbjct: 301 MVSEGFSPNCFTFTS-----VIAACANLAILYCGQQLHGGIIHRGLDNNLELSNALIDMY 355
Query: 163 GKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFS 222
K + D+ +FS ++ N V WT+ ++ GH + + F EM IK + F
Sbjct: 356 AKCGNVADSHKIFSGMRHTNLVSWTSMMIGYGAHGHGKEAVDLFNEMVGSGIKPDKIVFM 415
Query: 223 SVLKAC--GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELI 280
+VL AC G+ D+G ++ + + + D Y C +VD+ + +++A + E +
Sbjct: 416 AVLSACSHAGLVDEGLRYFRLMTSYYNVAPDRDIYA-C-VVDLLSRAGRVKEAYELIENM 473
Query: 281 VDKKNIASWNAML 293
K + + W A+L
Sbjct: 474 PFKPDESIWVALL 486
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 74/145 (51%), Gaps = 4/145 (2%)
Query: 154 LTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRER 213
LT LI Y E+A +F ++ + + WT+ I H + +N F M R+
Sbjct: 43 LTTDLIKSYFDKGSFEEAHTLFDEMPHRDVIAWTSMITGYTSCNHHSRAWNVFTNMLRDG 102
Query: 214 IKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLE-SDEYVQCGLVDMYGK-CRLLR 271
+K N++T S+VLKAC + CG+ +H +KIG + S YV L+DMY C +
Sbjct: 103 VKPNAFTVSAVLKACKSL-KALLCGKLVHGLAIKIGTQGSSIYVDNALMDMYATCCDSMD 161
Query: 272 DAERVFELIVDKKNIASWNAMLVGY 296
+A VFE I KN SW ++ GY
Sbjct: 162 NARLVFEDI-GTKNAVSWTTLITGY 185
>gi|125527050|gb|EAY75164.1| hypothetical protein OsI_03056 [Oryza sativa Indica Group]
Length = 669
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 89/295 (30%), Positives = 136/295 (46%), Gaps = 21/295 (7%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
+ I+ + N L+ M+ CG L A + F MP R SW +I G+V +++E +
Sbjct: 250 KFGIEADVDIRNALISMYTKCGCLSDALEAFQAMPARYTKSWNTLIDGFVQNHEHKEALR 309
Query: 99 LFAEMMKRKKGHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGS 157
+F EM+ V P I +V VL AC + G VH + G + LT S
Sbjct: 310 IFEEMLLHG------VTPDGITLVSVLSACAQLGELRKGMHVHSYIKDNGICCDNILTNS 363
Query: 158 LINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKN 217
LIN Y K + A+ VF + + + V WT + + F FN F+EM + +
Sbjct: 364 LINMYAKCGDMAAAERVFQTMTKKDVVSWTVMVCGYVKGHQFTMAFNLFEEMKIAEVVAH 423
Query: 218 SYTFSSVLKAC---GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAE 274
S+L AC G +D GR++H+ I ++ + D ++ LVDMY KC + A
Sbjct: 424 EMALVSLLSACSQLGALDK----GREIHSYIEEMNVAKDLCLESALVDMYAKCGCIDTAS 479
Query: 275 RVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLM------KASGIQIQESL 323
+F + K+ + SWNAM+ G NG EA + M K GI ++ L
Sbjct: 480 EIFRKMQHKQTL-SWNAMIGGLASNGYGKEAVELFDQMLELQDPKPDGITLKAVL 533
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 78/277 (28%), Positives = 137/277 (49%), Gaps = 18/277 (6%)
Query: 65 ARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPA-WIIVCV 123
AR++FD M + W MI GY ++ + +F EM R++G V P + + V
Sbjct: 71 ARKVFDGMAQPNAFVWNCMIRGYSSCEAPRDALAVFREM--RRRG----VSPDNYTMAAV 124
Query: 124 LKACVCTMNMEL---GKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
+ A ++ G +H L+ ++G + ++ + L+N+YG FR +++A VF ++
Sbjct: 125 VSASAAFAGLKWRSNGDAIHALVRRIGFTSDVFVMSGLVNYYGAFRSVKEASKVFEEMYE 184
Query: 181 HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG---GVDDDGNC 237
+ V WT+ I + GH+ +V EM E I N T S+L ACG VD+
Sbjct: 185 RDVVSWTSMISACAQCGHWDKVLKMLSEMQAEGIIPNKVTIISLLSACGQTQAVDE---- 240
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYI 297
GR ++ + K G+E+D ++ L+ MY KC L DA F+ + + SWN ++ G++
Sbjct: 241 GRWVYNQVGKFGIEADVDIRNALISMYTKCGCLSDALEAFQAM-PARYTKSWNTLIDGFV 299
Query: 298 RNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
+N + EA + M G+ + + AC+ +
Sbjct: 300 QNHEHKEALRIFEEMLLHGVTPDGITLVSVLSACAQL 336
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 76/300 (25%), Positives = 134/300 (44%), Gaps = 9/300 (3%)
Query: 38 KRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECI 97
+R+ + ++ L+ + + + A ++F+EM RD SW MI + + +
Sbjct: 148 RRIGFTSDVFVMSGLVNYYGAFRSVKEASKVFEEMYERDVVSWTSMISACAQCGHWDKVL 207
Query: 98 TLFAEMMKRKKGHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTG 156
+ +EM + P + I+ +L AC T ++ G+ V+ + K G ++ +
Sbjct: 208 KMLSEMQAEG------IIPNKVTIISLLSACGQTQAVDEGRWVYNQVGKFGIEADVDIRN 261
Query: 157 SLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKK 216
+LI+ Y K CL DA F + T W I + + F+EM +
Sbjct: 262 ALISMYTKCGCLSDALEAFQAMPARYTKSWNTLIDGFVQNHEHKEALRIFEEMLLHGVTP 321
Query: 217 NSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERV 276
+ T SVL AC + + G +H+ I G+ D + L++MY KC + AERV
Sbjct: 322 DGITLVSVLSACAQLGELRK-GMHVHSYIKDNGICCDNILTNSLINMYAKCGDMAAAERV 380
Query: 277 FELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
F+ + KK++ SW M+ GY++ + A MK + + E + L ACS + A
Sbjct: 381 FQTMT-KKDVVSWTVMVCGYVKGHQFTMAFNLFEEMKIAEVVAHEMALVSLLSACSQLGA 439
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 120/254 (47%), Gaps = 15/254 (5%)
Query: 47 LFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR 106
+ N L+ M+ CG + A ++F M +D SW VM+ GYV + LF EM
Sbjct: 359 ILTNSLINMYAKCGDMAAAERVFQTMTKKDVVSWTVMVCGYVKGHQFTMAFNLFEEMKIA 418
Query: 107 KKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166
+ +V +V +L AC ++ G+++H + ++ ++++ L +L++ Y K
Sbjct: 419 E-----VVAHEMALVSLLSACSQLGALDKGREIHSYIEEMNVAKDLCLESALVDMYAKCG 473
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGR-ERIKKNSYTFSSVL 225
C++ A +F +++ T+ W A I G+ + F +M + K + T +VL
Sbjct: 474 CIDTASEIFRKMQHKQTLSWNAMIGGLASNGYGKEAVELFDQMLELQDPKPDGITLKAVL 533
Query: 226 KAC---GGVDDDGNCGRQMHANIVKIGLESD-EYVQCGLVDMYGKCRLLRDAERVFELIV 281
AC G VD+ G + + +G+ D E+ C +VD+ G+ +L +A + +
Sbjct: 534 GACAHVGMVDE----GLRYFYLMSSLGVVPDTEHYGC-IVDLLGRAGMLDEAFHFIKKMP 588
Query: 282 DKKNIASWNAMLVG 295
+ N W ++L
Sbjct: 589 IEPNPVIWGSLLAA 602
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 74/163 (45%), Gaps = 8/163 (4%)
Query: 38 KRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECI 97
+ +N+ L + L+ M+ CG +DTA ++F +M + SW MI G +E +
Sbjct: 451 EEMNVAKDLCLESALVDMYAKCGCIDTASEIFRKMQHKQTLSWNAMIGGLASNGYGKEAV 510
Query: 98 TLFAEMMKRKKGHMLLVFPAWIIV-CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTG 156
LF +M++ + P I + VL AC ++ G + L+ LG + G
Sbjct: 511 ELFDQMLELQDPK-----PDGITLKAVLGACAHVGMVDEGLRYFYLMSSLGVVPDTEHYG 565
Query: 157 SLINFYGKFRCLEDA-DFVFSQLKRHNTVVWTAKIVNNCREGH 198
+++ G+ L++A F+ N V+W ++ CR H
Sbjct: 566 CIVDLLGRAGMLDEAFHFIKKMPIEPNPVIW-GSLLAACRVHH 607
>gi|297604972|ref|NP_001056430.2| Os05g0581300 [Oryza sativa Japonica Group]
gi|255676606|dbj|BAF18344.2| Os05g0581300 [Oryza sativa Japonica Group]
Length = 704
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 79/265 (29%), Positives = 122/265 (46%), Gaps = 6/265 (2%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
++ + T N L ++ C +D A M RD +W +I YV +E I
Sbjct: 202 KLGLDSTPYVANTLATLYARCSDVDRALAAVSRMGTRDVAAWTTVISAYVQTGRAKEAIE 261
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
F M+ R++ + + V+ AC + LG+Q+H + G + S+ SL
Sbjct: 262 AFVRML-REESSVAASPNEYTYAAVIAACADIAWVCLGEQLHAQAARKGFACARSVANSL 320
Query: 159 INFYGKFR-CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRER--IK 215
+ Y + CL AD VF + + V W+A I +EG F F+EM +
Sbjct: 321 VTLYTRAAGCLSAADAVFRESVVKDVVSWSAIISGYAQEGLAEDAFALFREMRHHSGCPR 380
Query: 216 KNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAER 275
N +T +S+L C + GRQ+H V GLE ++ L+DMYGK + DA+
Sbjct: 381 PNEFTLASLLSVCATAASL-DAGRQLHTLAVAAGLEHHAMIRSALIDMYGKSGSMLDADI 439
Query: 276 VFELIVDKKNIASWNAMLVGYIRNG 300
VF V K ++ SW AM+VGY +G
Sbjct: 440 VFSHRV-KDDVVSWTAMIVGYAEHG 463
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 65/257 (25%), Positives = 117/257 (45%), Gaps = 11/257 (4%)
Query: 61 QLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWII 120
+L A +LFD MP RD ++A ++ G+ D+ + LF+ + R L +++
Sbjct: 16 RLADAHRLFDGMPRRDEVAYATLLAGHAAAGDFPGAMALFSRL--RASSPPLAPADPFVL 73
Query: 121 VCVLKACVCTMNMEL---GKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQ 177
V K+C + +H + + ++ + +L + Y K CL A VF +
Sbjct: 74 SLVFKSCAAAADARFLPHAASLHAFAVRSSAVSSVFVATALADVYAKAGCLGLALKVFDE 133
Query: 178 LKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC 237
+ N V WT + + R G H+ F EM + +SY +++ L AC
Sbjct: 134 MPHKNVVSWTTLVASLTRAGRRHEALRRFSEMRASGVHCDSYAYAAALTACADAGLLSR- 192
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELI--VDKKNIASWNAMLVG 295
GR++HA K+GL+S YV L +Y +C D +R + + +++A+W ++
Sbjct: 193 GREVHAFCAKLGLDSTPYVANTLATLYARC---SDVDRALAAVSRMGTRDVAAWTTVISA 249
Query: 296 YIRNGLYVEATKFLYLM 312
Y++ G EA + M
Sbjct: 250 YVQTGRAKEAIEAFVRM 266
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 70/260 (26%), Positives = 119/260 (45%), Gaps = 33/260 (12%)
Query: 50 NRLLLMHV-SCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
N L+ ++ + G L A +F E ++D SW+ +I GY ++ LF EM +
Sbjct: 318 NSLVTLYTRAAGCLSAADAVFRESVVKDVVSWSAIISGYAQEGLAEDAFALFREM----R 373
Query: 109 GHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
H P + + +L C +++ G+Q+H L G + + +LI+ YGK
Sbjct: 374 HHSGCPRPNEFTLASLLSVCATAASLDAGRQLHTLAVAAGLEHHAMIRSALIDMYGKSGS 433
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
+ DAD VFS + + V WTA IV GH + F+EM +K + TF VL A
Sbjct: 434 MLDADIVFSHRVKDDVVSWTAMIVGYAEHGHSKKALELFQEMCHVGLKPDHVTFIGVLNA 493
Query: 228 CGGVDDDGNCGRQMHANIVKIGL-------------ESDEYVQCGLVDMYGKCRLLRDAE 274
C C HA V++GL + E+ C +VD+ G+ + +AE
Sbjct: 494 C--------C----HAGEVELGLRYLNEMNQIYGLYPAKEHYGC-VVDLLGRAGRINEAE 540
Query: 275 RVF-ELIVDKKNIASWNAML 293
+ ++ ++++ W ++L
Sbjct: 541 ELIGKIAANERDGVVWTSLL 560
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 72/282 (25%), Positives = 119/282 (42%), Gaps = 16/282 (5%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R + ++ L ++ G L A ++FDEMP ++ SW ++ E +
Sbjct: 101 RSSAVSSVFVATALADVYAKAGCLGLALKVFDEMPHKNVVSWTTLVASLTRAGRRHEALR 160
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
F+EM R G + ++ L AC + G++VH KLG + +L
Sbjct: 161 RFSEM--RASG---VHCDSYAYAAALTACADAGLLSRGREVHAFCAKLGLDSTPYVANTL 215
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRER----I 214
Y + ++ A S++ + WT I + G + F M RE
Sbjct: 216 ATLYARCSDVDRALAAVSRMGTRDVAAWTTVISAYVQTGRAKEAIEAFVRMLREESSVAA 275
Query: 215 KKNSYTFSSVLKACGGVDDDGNC-GRQMHANIVKIGLESDEYVQCGLVDMYGKCR-LLRD 272
N YT+++V+ AC D C G Q+HA + G V LV +Y + L
Sbjct: 276 SPNEYTYAAVIAAC--ADIAWVCLGEQLHAQAARKGFACARSVANSLVTLYTRAAGCLSA 333
Query: 273 AERVF-ELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMK 313
A+ VF E +V K++ SW+A++ GY + GL +A M+
Sbjct: 334 ADAVFRESVV--KDVVSWSAIISGYAQEGLAEDAFALFREMR 373
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 64/156 (41%), Gaps = 6/156 (3%)
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFH---QVFNDFKEMGRERIKKNSYTFSSV 224
L DA +F + R + V + + + G F +F+ + + + S V
Sbjct: 17 LADAHRLFDGMPRRDEVAYATLLAGHAAAGDFPGAMALFSRLRASSPPLAPADPFVLSLV 76
Query: 225 LKACGGVDDDG--NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282
K+C D +HA V+ S +V L D+Y K L A +VF+ +
Sbjct: 77 FKSCAAAADARFLPHAASLHAFAVRSSAVSSVFVATALADVYAKAGCLGLALKVFDEM-P 135
Query: 283 KKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
KN+ SW ++ R G EA + M+ASG+
Sbjct: 136 HKNVVSWTTLVASLTRAGRRHEALRRFSEMRASGVH 171
>gi|410109981|gb|AFV61070.1| pentatricopeptide repeat-containing protein 81, partial [Lantana
camara]
Length = 373
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 139/287 (48%), Gaps = 10/287 (3%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMP-LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRK 107
LN + + CG ++ A+++FD RD +W ++ Y++ + +F EM+K++
Sbjct: 94 LNASITAYAECGCIEDAKRVFDSSDGYRDLVTWNSILAAYLEHNLEEYGFNIFLEMVKQR 153
Query: 108 KGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF-- 165
L A+ + ++ AC LGK +HGL K G + ++ +L++ Y K
Sbjct: 154 -----LEMDAYTLSSIISACFEDTQQSLGKSLHGLAIKKGLDQVTQISNALVSMYLKSNN 208
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
R +EDA +F + + V W + + G F+ + + + + YTF++VL
Sbjct: 209 RNVEDALKIFEHINIKDLVSWNTILTGLSQNGLSENALRLFQNIHLDHLVTDQYTFAAVL 268
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
++C + + GRQ+H +VK G E +EYV L+ MY KC ++ DA FE + K+
Sbjct: 269 RSCSDLAT-LHLGRQIHVLVVKSGFEGNEYVASALIFMYSKCGIIEDARESFESSL-KET 326
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+WN+++ Y ++G A YLM I++ ACS
Sbjct: 327 SVTWNSIIFAYAQHGQGKIALDLFYLMTERRIKLDHVTFVAALTACS 373
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 126/255 (49%), Gaps = 12/255 (4%)
Query: 59 CGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEM-MKRKKGHMLLVFPA 117
C +++ A ++F M R+ SW +I GY ++ + + C+ LF M M+ + P
Sbjct: 3 CRRVEDANKVFKYMRERNAVSWNALIGGYAEMGNLERCVMLFVGMEMEGVRVDDATFAP- 61
Query: 118 WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVF-S 176
++ + A + +L +Q+HG + K G ++ + I Y + C+EDA VF S
Sbjct: 62 -LLTLLYDAEL----YDLMRQLHGKIMKRGLEHENTVLNASITAYAECGCIEDAKRVFDS 116
Query: 177 QLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGN 236
+ V W + + FN F EM ++R++ ++YT SS++ AC D +
Sbjct: 117 SDGYRDLVTWNSILAAYLEHNLEEYGFNIFLEMVKQRLEMDAYTLSSIISACFE-DTQQS 175
Query: 237 CGRQMHANIVKIGLESDEYVQCGLVDMYGKC--RLLRDAERVFELIVDKKNIASWNAMLV 294
G+ +H +K GL+ + LV MY K R + DA ++FE I + K++ SWN +L
Sbjct: 176 LGKSLHGLAIKKGLDQVTQISNALVSMYLKSNNRNVEDALKIFEHI-NIKDLVSWNTILT 234
Query: 295 GYIRNGLYVEATKFL 309
G +NGL A +
Sbjct: 235 GLSQNGLSENALRLF 249
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 69/139 (49%), Gaps = 1/139 (0%)
Query: 163 GKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFS 222
K R +EDA+ VF ++ N V W A I G+ + F M E ++ + TF+
Sbjct: 1 AKCRRVEDANKVFKYMRERNAVSWNALIGGYAEMGNLERCVMLFVGMEMEGVRVDDATFA 60
Query: 223 SVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282
+L + + RQ+H I+K GLE + V + Y +C + DA+RVF+
Sbjct: 61 PLLTLLYDAEL-YDLMRQLHGKIMKRGLEHENTVLNASITAYAECGCIEDAKRVFDSSDG 119
Query: 283 KKNIASWNAMLVGYIRNGL 301
+++ +WN++L Y+ + L
Sbjct: 120 YRDLVTWNSILAAYLEHNL 138
>gi|357143265|ref|XP_003572861.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g01580-like [Brachypodium distachyon]
Length = 697
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 85/297 (28%), Positives = 147/297 (49%), Gaps = 13/297 (4%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R N + L+ +N +L ++ G + AR+LF+ M +D +W+ M+ GYV D E +T
Sbjct: 230 RNNFEYDLVLVNAILGFYMRIGAVQAARRLFEGMTEKDVVTWSCMVTGYVQSGDICEALT 289
Query: 99 LFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGS 157
+ +M++ + P A +V V++AC ++E G++VH + K+G +++ +
Sbjct: 290 AYKKMVEAG------IKPNAVTVVSVVQACSLAPDIEEGRRVHDIAVKIGCELEMTVATA 343
Query: 158 LINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKN 217
L++ Y K C E+A +F ++ + + V W I + G + FK M +
Sbjct: 344 LVDMYMKCSCHEEAMQLFCRMSKKDAVAWAVVISGFTQNGLPDESMRVFKCMLFGGPFPD 403
Query: 218 SYTFSSVLKAC--GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAER 275
+ T VL AC GV C +H +V G +V LVD+Y KC L A R
Sbjct: 404 AVTMVKVLAACSESGVMRQAFC---LHGYLVITGFCDKIFVAAALVDLYSKCGNLGCAVR 460
Query: 276 VFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
VFE ++ K++ W++M+ GY +GL +A + +M AS ++ + ACS
Sbjct: 461 VFESAME-KDVVLWSSMISGYGVHGLGQQAVELFQMMVASSVKPNSLTFVSVLSACS 516
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 75/330 (22%), Positives = 135/330 (40%), Gaps = 8/330 (2%)
Query: 5 CLPITTDMYTC--LIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQL 62
CL + D +T L+K C A L + L+ M+ C +
Sbjct: 92 CLRVRPDAFTLSLLLKACAMLPALAHGRALHALAIRSCTAYTDAFVAAALVHMYAKCRGM 151
Query: 63 DTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVC 122
+ ++ D M+ GY E + F+ + G + P +V
Sbjct: 152 VGSINAYNAFSEPDMVLRTSMVTGYEQNRMAAEALEFFS---RHVVGQGFMPSPV-TLVS 207
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
V+ A ++ G+ H + + ++ L +++ FY + ++ A +F + +
Sbjct: 208 VISAAAQLKDVLNGQACHAFVIRNNFEYDLVLVNAILGFYMRIGAVQAARRLFEGMTEKD 267
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
V W+ + + G + +K+M IK N+ T SV++AC + D GR++H
Sbjct: 268 VVTWSCMVTGYVQSGDICEALTAYKKMVEAGIKPNAVTVVSVVQAC-SLAPDIEEGRRVH 326
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
VKIG E + V LVDMY KC +A ++F + KK+ +W ++ G+ +NGL
Sbjct: 327 DIAVKIGCELEMTVATALVDMYMKCSCHEEAMQLF-CRMSKKDAVAWAVVISGFTQNGLP 385
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIACS 332
E+ + M G + + ACS
Sbjct: 386 DESMRVFKCMLFGGPFPDAVTMVKVLAACS 415
>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 738
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 85/279 (30%), Positives = 135/279 (48%), Gaps = 18/279 (6%)
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AW 118
G LD AR+LF+E+P+RD SW MI GY ++E + F EM + V P
Sbjct: 212 GCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRAN------VAPNES 265
Query: 119 IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL 178
+V VL AC + ++ELG V + G N+ L +LI+ Y K L+ A +F +
Sbjct: 266 TMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGI 325
Query: 179 KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC---GGVDDDG 235
+ + W I + + F++M + ++ N TF S+L AC G +D
Sbjct: 326 CEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALD--- 382
Query: 236 NCGRQMHANIVK--IGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
G+ +HA I K +GL ++ + L+DMY KC + A++VF + K++ SWNAM+
Sbjct: 383 -LGKWIHAYIDKKFLGL-TNTSLWTSLIDMYAKCGNIEAAKQVFAGM-KPKSLGSWNAMI 439
Query: 294 VGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
G +G A + M+ G + + + ACS
Sbjct: 440 SGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACS 478
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 86/276 (31%), Positives = 136/276 (49%), Gaps = 19/276 (6%)
Query: 27 AGAFELLNHIRKRV---NIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVM 83
+G+ EL N +R + + L +N L+ M+ CG LD AR LF+ + +D SW VM
Sbjct: 277 SGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVM 336
Query: 84 IVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLL 143
I GY + Y+E + LF +M + + F V +L AC ++LGK +H +
Sbjct: 337 IGGYSHMNSYKEALALFRKMQQSNVEPNDVTF-----VSILPACAYLGALDLGKWIHAYI 391
Query: 144 FK--LGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQ 201
K LG + N SL SLI+ Y K +E A VF+ +K + W A I GH +
Sbjct: 392 DKKFLGLT-NTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANM 450
Query: 202 VFNDFKEMGRERIKKNSYTFSSVLKAC---GGVDDDGNCGRQMHANIVKIGLESDEYVQC 258
F++M E + + TF VL AC G V+ GRQ +++V+ S +
Sbjct: 451 ALELFRQMRDEGFEPDDITFVGVLSACSHAGLVE----LGRQCFSSMVEDYDISPKLQHY 506
Query: 259 G-LVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
G ++D+ G+ L +AE + + + K + A W ++L
Sbjct: 507 GCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLL 542
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 85/310 (27%), Positives = 124/310 (40%), Gaps = 42/310 (13%)
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI 119
G L A LF+ + + W MI G + I + M+ FP
Sbjct: 80 GNLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFP--- 136
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK--------------- 164
+LK+C + GKQ+HG + KLG + + SLIN Y +
Sbjct: 137 --FLLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSS 194
Query: 165 ----------------FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKE 208
CL+DA +F ++ + V W A I + G F + F+E
Sbjct: 195 LRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQE 254
Query: 209 MGRERIKKNSYTFSSVLKACG--GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGK 266
M R + N T +VL AC G + GN R I GL S+ + L+DMY K
Sbjct: 255 MKRANVAPNESTMVTVLSACAQSGSLELGNWVRSW---IEDHGLGSNLRLVNALIDMYSK 311
Query: 267 CRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLIND 326
C L A +FE I + K+I SWN M+ GY Y EA M+ S ++ +
Sbjct: 312 CGDLDKARDLFEGICE-KDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVS 370
Query: 327 LRIACSSISA 336
+ AC+ + A
Sbjct: 371 ILPACAYLGA 380
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 68/245 (27%), Positives = 105/245 (42%), Gaps = 38/245 (15%)
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINF--YGKFRCLEDADFVFSQL 178
+ +L C N+ KQ+H + K G LI F F L A +F +
Sbjct: 36 LTLLSTCKSFQNL---KQIHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESI 92
Query: 179 KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCG 238
++ N +W I N + + M ++ NSYTF +LK+C V G
Sbjct: 93 EQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQE-G 151
Query: 239 RQMHANIVKIGLESDEYVQCGLVDMY------GKCRL----------------------- 269
+Q+H +++K+GLESD +V L++MY G L
Sbjct: 152 KQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLR 211
Query: 270 --LRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDL 327
L DA R+FE I ++ SWNAM+ GY ++G + EA F MK + + ES + +
Sbjct: 212 GCLDDARRLFEEI-PVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTV 270
Query: 328 RIACS 332
AC+
Sbjct: 271 LSACA 275
>gi|125571373|gb|EAZ12888.1| hypothetical protein OsJ_02809 [Oryza sativa Japonica Group]
Length = 669
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 89/295 (30%), Positives = 136/295 (46%), Gaps = 21/295 (7%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
+ I+ + N L+ M+ CG L A + F MP R SW +I G+V +++E +
Sbjct: 250 KFGIEADVDIRNALISMYTKCGCLSDALEAFQAMPARYTKSWNTLIDGFVQNHEHKEALR 309
Query: 99 LFAEMMKRKKGHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGS 157
+F EM+ V P I +V VL AC + G VH + G + LT S
Sbjct: 310 IFEEMLLHG------VTPDGITLVSVLSACAQLGELRKGMHVHSYIKDNGICCDNILTNS 363
Query: 158 LINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKN 217
LIN Y K + A+ VF + + + V WT + + F FN F+EM + +
Sbjct: 364 LINMYAKCGDMAAAERVFQTMTKKDVVSWTVMVCGYVKGHQFTMAFNLFEEMKIAEVVAH 423
Query: 218 SYTFSSVLKAC---GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAE 274
S+L AC G +D GR++H+ I ++ + D ++ LVDMY KC + A
Sbjct: 424 EMALVSLLSACSQLGALDK----GREIHSYIEEMNVAKDLCLESALVDMYAKCGCIDTAS 479
Query: 275 RVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLM------KASGIQIQESL 323
+F + K+ + SWNAM+ G NG EA + M K GI ++ L
Sbjct: 480 EIFRKMQHKQTL-SWNAMIGGLASNGYGKEAVELFDQMLELQDPKPDGITLKAVL 533
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/277 (28%), Positives = 137/277 (49%), Gaps = 18/277 (6%)
Query: 65 ARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPA-WIIVCV 123
AR++FD M + W MI GY ++ + +F EM R++G V P + + V
Sbjct: 71 ARKVFDGMAQPNAFVWNCMIRGYSSCEAPRDALAVFREM--RRRG----VSPDNYTMAAV 124
Query: 124 LKACVCTMNMEL---GKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
+ A ++ G +H L+ ++G + ++ + L+N+YG FR +E+A VF ++
Sbjct: 125 VSASAAFAGLKWRSNGDAIHALVRRIGFTSDVFVMSGLVNYYGAFRSVEEASKVFEEMYE 184
Query: 181 HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG---GVDDDGNC 237
+ V WT+ I + GH+ +V EM E I N T S+L ACG VD+
Sbjct: 185 RDVVSWTSMISACAQCGHWDKVLKMLSEMQAEGIIPNKVTIISLLSACGQTQAVDE---- 240
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYI 297
GR ++ + K G+E+D ++ L+ MY KC L DA F+ + + SWN ++ G++
Sbjct: 241 GRWVYNQVGKFGIEADVDIRNALISMYTKCGCLSDALEAFQAM-PARYTKSWNTLIDGFV 299
Query: 298 RNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
+N + EA + M G+ + + AC+ +
Sbjct: 300 QNHEHKEALRIFEEMLLHGVTPDGITLVSVLSACAQL 336
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 76/300 (25%), Positives = 135/300 (45%), Gaps = 9/300 (3%)
Query: 38 KRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECI 97
+R+ + ++ L+ + + ++ A ++F+EM RD SW MI + + +
Sbjct: 148 RRIGFTSDVFVMSGLVNYYGAFRSVEEASKVFEEMYERDVVSWTSMISACAQCGHWDKVL 207
Query: 98 TLFAEMMKRKKGHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTG 156
+ +EM + P + I+ +L AC T ++ G+ V+ + K G ++ +
Sbjct: 208 KMLSEMQAEG------IIPNKVTIISLLSACGQTQAVDEGRWVYNQVGKFGIEADVDIRN 261
Query: 157 SLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKK 216
+LI+ Y K CL DA F + T W I + + F+EM +
Sbjct: 262 ALISMYTKCGCLSDALEAFQAMPARYTKSWNTLIDGFVQNHEHKEALRIFEEMLLHGVTP 321
Query: 217 NSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERV 276
+ T SVL AC + + G +H+ I G+ D + L++MY KC + AERV
Sbjct: 322 DGITLVSVLSACAQLGELRK-GMHVHSYIKDNGICCDNILTNSLINMYAKCGDMAAAERV 380
Query: 277 FELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
F+ + KK++ SW M+ GY++ + A MK + + E + L ACS + A
Sbjct: 381 FQTMT-KKDVVSWTVMVCGYVKGHQFTMAFNLFEEMKIAEVVAHEMALVSLLSACSQLGA 439
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 120/254 (47%), Gaps = 15/254 (5%)
Query: 47 LFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR 106
+ N L+ M+ CG + A ++F M +D SW VM+ GYV + LF EM
Sbjct: 359 ILTNSLINMYAKCGDMAAAERVFQTMTKKDVVSWTVMVCGYVKGHQFTMAFNLFEEMKIA 418
Query: 107 KKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166
+ +V +V +L AC ++ G+++H + ++ ++++ L +L++ Y K
Sbjct: 419 E-----VVAHEMALVSLLSACSQLGALDKGREIHSYIEEMNVAKDLCLESALVDMYAKCG 473
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGR-ERIKKNSYTFSSVL 225
C++ A +F +++ T+ W A I G+ + F +M + K + T +VL
Sbjct: 474 CIDTASEIFRKMQHKQTLSWNAMIGGLASNGYGKEAVELFDQMLELQDPKPDGITLKAVL 533
Query: 226 KAC---GGVDDDGNCGRQMHANIVKIGLESD-EYVQCGLVDMYGKCRLLRDAERVFELIV 281
AC G VD+ G + + +G+ D E+ C +VD+ G+ +L +A + +
Sbjct: 534 GACAHVGMVDE----GLRYFYLMSSLGVVPDTEHYGC-IVDLLGRAGMLDEAFHFIKKMP 588
Query: 282 DKKNIASWNAMLVG 295
+ N W ++L
Sbjct: 589 IEPNPVIWGSLLAA 602
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 74/163 (45%), Gaps = 8/163 (4%)
Query: 38 KRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECI 97
+ +N+ L + L+ M+ CG +DTA ++F +M + SW MI G +E +
Sbjct: 451 EEMNVAKDLCLESALVDMYAKCGCIDTASEIFRKMQHKQTLSWNAMIGGLASNGYGKEAV 510
Query: 98 TLFAEMMKRKKGHMLLVFPAWIIV-CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTG 156
LF +M++ + P I + VL AC ++ G + L+ LG + G
Sbjct: 511 ELFDQMLELQDPK-----PDGITLKAVLGACAHVGMVDEGLRYFYLMSSLGVVPDTEHYG 565
Query: 157 SLINFYGKFRCLEDA-DFVFSQLKRHNTVVWTAKIVNNCREGH 198
+++ G+ L++A F+ N V+W ++ CR H
Sbjct: 566 CIVDLLGRAGMLDEAFHFIKKMPIEPNPVIW-GSLLAACRVHH 607
>gi|193848497|gb|ACF22688.1| vegetative storage protein [Brachypodium distachyon]
Length = 587
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 85/297 (28%), Positives = 147/297 (49%), Gaps = 13/297 (4%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R N + L+ +N +L ++ G + AR+LF+ M +D +W+ M+ GYV D E +T
Sbjct: 120 RNNFEYDLVLVNAILGFYMRIGAVQAARRLFEGMTEKDVVTWSCMVTGYVQSGDICEALT 179
Query: 99 LFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGS 157
+ +M++ + P A +V V++AC ++E G++VH + K+G +++ +
Sbjct: 180 AYKKMVEAG------IKPNAVTVVSVVQACSLAPDIEEGRRVHDIAVKIGCELEMTVATA 233
Query: 158 LINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKN 217
L++ Y K C E+A +F ++ + + V W I + G + FK M +
Sbjct: 234 LVDMYMKCSCHEEAMQLFCRMSKKDAVAWAVVISGFTQNGLPDESMRVFKCMLFGGPFPD 293
Query: 218 SYTFSSVLKAC--GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAER 275
+ T VL AC GV C +H +V G +V LVD+Y KC L A R
Sbjct: 294 AVTMVKVLAACSESGVMRQAFC---LHGYLVITGFCDKIFVAAALVDLYSKCGNLGCAVR 350
Query: 276 VFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
VFE ++ K++ W++M+ GY +GL +A + +M AS ++ + ACS
Sbjct: 351 VFESAME-KDVVLWSSMISGYGVHGLGQQAVELFQMMVASSVKPNSLTFVSVLSACS 406
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/281 (23%), Positives = 122/281 (43%), Gaps = 6/281 (2%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ C + + ++ D M+ GY E + F+ + G
Sbjct: 31 LVHMYAKCRGMVGSINAYNAFSEPDMVLRTSMVTGYEQNRMAAEALEFFS---RHVVGQG 87
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+ P +V V+ A ++ G+ H + + ++ L +++ FY + ++ A
Sbjct: 88 FMPSPV-TLVSVISAAAQLKDVLNGQACHAFVIRNNFEYDLVLVNAILGFYMRIGAVQAA 146
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
+F + + V W+ + + G + +K+M IK N+ T SV++AC +
Sbjct: 147 RRLFEGMTEKDVVTWSCMVTGYVQSGDICEALTAYKKMVEAGIKPNAVTVVSVVQAC-SL 205
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
D GR++H VKIG E + V LVDMY KC +A ++F + KK+ +W
Sbjct: 206 APDIEEGRRVHDIAVKIGCELEMTVATALVDMYMKCSCHEEAMQLF-CRMSKKDAVAWAV 264
Query: 292 MLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
++ G+ +NGL E+ + M G + + ACS
Sbjct: 265 VISGFTQNGLPDESMRVFKCMLFGGPFPDAVTMVKVLAACS 305
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 70/285 (24%), Positives = 125/285 (43%), Gaps = 17/285 (5%)
Query: 16 LIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLR 75
+++ C+ D ++ I ++ + + L+ M++ C + A QLF M +
Sbjct: 199 VVQACSLAPDIEEG-RRVHDIAVKIGCELEMTVATALVDMYMKCSCHEEAMQLFCRMSKK 257
Query: 76 DFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTMNME 134
D +WAV+I G+ E + +F M+ FP A +V VL AC + M
Sbjct: 258 DAVAWAVVISGFTQNGLPDESMRVFKCMLFGGP------FPDAVTMVKVLAACSESGVMR 311
Query: 135 LGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNC 194
+HG L G I + +L++ Y K L A VF + V+W++ I
Sbjct: 312 QAFCLHGYLVITGFCDKIFVAAALVDLYSKCGNLGCAVRVFESAMEKDVVLWSSMISGYG 371
Query: 195 REGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC---GGVDDDGNCGRQMHANIVKI-GL 250
G Q F+ M +K NS TF SVL AC G V + G+++ ++ ++ G+
Sbjct: 372 VHGLGQQAVELFQMMVASSVKPNSLTFVSVLSACSHSGLVQE----GKRIFESMTQVYGV 427
Query: 251 ESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
+ +VD+ G+ L++A ++ + + +W A+L
Sbjct: 428 VPNAVHHSAMVDLLGRAGELQEAAKLLHG-NGRADAHTWCALLAA 471
>gi|11994503|dbj|BAB02568.1| unnamed protein product [Arabidopsis thaliana]
Length = 1161
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 83/284 (29%), Positives = 143/284 (50%), Gaps = 15/284 (5%)
Query: 43 KP--TLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLF 100
KP L+ N L+ M+ C + A ++FD MP R+ SW+ ++ G+V D + ++LF
Sbjct: 407 KPWLNLITSNYLIDMYCKCREPLMAYKVFDSMPERNVVSWSALMSGHVLNGDLKGSLSLF 466
Query: 101 AEMMKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLI 159
+EM ++ ++P + LKAC +E G Q+HG K+G + + SL+
Sbjct: 467 SEMGRQG------IYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLV 520
Query: 160 NFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKK--N 217
+ Y K + +A+ VF ++ + + W A I G+ + + F M IK+ +
Sbjct: 521 DMYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPD 580
Query: 218 SYTFSSVLKACGGVDDDGNCGRQMHANIVKIGL--ESDEYVQCGLVDMYGKCRLLRDAER 275
+T +S+LKAC G+Q+H +V+ G S + LVD+Y KC L A +
Sbjct: 581 EFTLTSLLKACSSTGMI-YAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSARK 639
Query: 276 VFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQI 319
F+ I +K I SW+++++GY + G +VEA ++ QI
Sbjct: 640 AFDQIKEKTMI-SWSSLILGYAQEGEFVEAMGLFKRLQELNSQI 682
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 86/290 (29%), Positives = 144/290 (49%), Gaps = 17/290 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ CG+++ A ++F + R SW MI G+V + + F M ++
Sbjct: 517 NSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMM---QEA 573
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLG--SSRNISLTGSLINFYGKFRC 167
++ + + +LKAC T + GKQ+HG L + G + ++TGSL++ Y K
Sbjct: 574 NIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGY 633
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
L A F Q+K + W++ I+ +EG F + FK + + +S+ SS++
Sbjct: 634 LFSARKAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSSII-- 691
Query: 228 CGGVDDDGNC---GRQMHANIVKI--GLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282
GV D G+QM A VK+ GLE+ V +VDMY KC L+ +AE+ F +
Sbjct: 692 --GVFADFALLRQGKQMQALAVKLPSGLETS--VLNSVVDMYLKCGLVDEAEKCFAEM-Q 746
Query: 283 KKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
K++ SW ++ GY ++GL ++ + Y M I+ E + ACS
Sbjct: 747 LKDVISWTVVITGYGKHGLGKKSVRIFYEMLRHNIEPDEVCYLAVLSACS 796
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 61/263 (23%), Positives = 127/263 (48%), Gaps = 15/263 (5%)
Query: 36 IRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQE 95
+R + + L+ ++V CG L +AR+ FD++ + SW+ +I+GY ++ E
Sbjct: 608 VRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIKEKTMISWSSLILGYAQEGEFVE 667
Query: 96 CITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLT 155
+ LF + ++ + F I+ V + GKQ+ L KL S S+
Sbjct: 668 AMGLFKRL--QELNSQIDSFALSSIIGVFADFAL---LRQGKQMQALAVKLPSGLETSVL 722
Query: 156 GSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIK 215
S+++ Y K +++A+ F++++ + + WT I + G + F EM R I+
Sbjct: 723 NSVVDMYLKCGLVDEAEKCFAEMQLKDVISWTVVITGYGKHGLGKKSVRIFYEMLRHNIE 782
Query: 216 KNSYTFSSVLKAC---GGVDDDGNCGRQMHANIVKI-GLESD-EYVQCGLVDMYGKCRLL 270
+ + +VL AC G + + G ++ + +++ G++ E+ C +VD+ G+ L
Sbjct: 783 PDEVCYLAVLSACSHSGMIKE----GEELFSKLLETHGIKPRVEHYAC-VVDLLGRAGRL 837
Query: 271 RDAERVFELIVDKKNIASWNAML 293
++A+ + + + K N+ W +L
Sbjct: 838 KEAKHLIDTMPIKPNVGIWQTLL 860
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 81/167 (48%), Gaps = 17/167 (10%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
LN ++ M++ CG +D A + F EM L+D SW V+I GY ++ + +F EM++
Sbjct: 722 LNSVVDMYLKCGLVDEAEKCFAEMQLKDVISWTVVITGYGKHGLGKKSVRIFYEMLRHN- 780
Query: 109 GHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKL-GSSRNISLTGSLINFYGKFR 166
+ P + + VL AC + ++ G+++ L + G + +++ G+
Sbjct: 781 -----IEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETHGIKPRVEHYACVVDLLGRAG 835
Query: 167 CLEDADFVFSQLK-RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRE 212
L++A + + + N +W +++ CR V D E+G+E
Sbjct: 836 RLKEAKHLIDTMPIKPNVGIWQT-LLSLCR------VHGDI-ELGKE 874
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 260 LVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQI 319
L+DMY KCR A +VF+ + ++ N+ SW+A++ G++ NG + M GI
Sbjct: 418 LIDMYCKCREPLMAYKVFDSMPER-NVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYP 476
Query: 320 QESLINDLRIACSSISA 336
E + AC ++A
Sbjct: 477 NEFTFSTNLKACGLLNA 493
>gi|357519251|ref|XP_003629914.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355523936|gb|AET04390.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 727
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 101/355 (28%), Positives = 160/355 (45%), Gaps = 40/355 (11%)
Query: 10 TDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLF 69
T + +IK D A +L + + +R +I T + L S G+++ A + F
Sbjct: 121 TISWNSVIKASIICNDFVTAVKLFDEMPQRNSISWTTIIHGFL-----STGRVNEAERFF 175
Query: 70 DEMPL--RDFNSWAVMIVGYVDVADYQECITLFAEMMKRK---------------KGHML 112
+ MP +D +W M+ GY + + + LF +M R K +
Sbjct: 176 NAMPYVDKDVATWNAMVNGYCNNGRVNDALRLFCQMPSRDVISWTSIIVGLDRNGKSYQA 235
Query: 113 LVF------------PAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNIS--LTGSL 158
L F + +VC L A ++ G Q+H +FK G + ++ SL
Sbjct: 236 LFFFKNMVGFSGVGISSTTLVCGLSAAAKILDFYAGIQIHCCMFKFGFCCGLDEFVSASL 295
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFH-QVFNDFKEMGRERIKKN 217
+ FY + + DA VF + N VVWTA ++ C H + F EM R + N
Sbjct: 296 VTFYASCKRMGDACKVFGETVCKNVVVWTA-LLTGCGLNDKHVEALEVFSEMMRFNVVPN 354
Query: 218 SYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVF 277
+F+S L +C G++D GR +HA +K+GLE+ Y LV MY KC + DA VF
Sbjct: 355 ESSFTSALNSCVGLEDLEK-GRVIHAAGIKMGLENAVYTGNSLVVMYSKCGFIGDALCVF 413
Query: 278 ELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+ I +K N+ SWN+++VG ++G A M G++ E + L ACS
Sbjct: 414 KGICEK-NVVSWNSVIVGCAQHGCGTWALVLFKEMLREGVESDEITLTGLLSACS 467
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 82/321 (25%), Positives = 127/321 (39%), Gaps = 51/321 (15%)
Query: 11 DMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFD 70
+YT L+ + A L N I N K T+ + N ++ + C TA +LFD
Sbjct: 89 SLYTKLLLAYAHNNNLHEAINLFNQIPS--NTKDTISW-NSVIKASIICNDFVTAVKLFD 145
Query: 71 EMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCT 130
EMP R+ SW +I G++ E F M K
Sbjct: 146 EMPQRNSISWTTIIHGFLSTGRVNEAERFFNAMPYVDK---------------------- 183
Query: 131 MNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKI 190
+++ +++N Y + DA +F Q+ + + WT+ I
Sbjct: 184 --------------------DVATWNAMVNGYCNNGRVNDALRLFCQMPSRDVISWTSII 223
Query: 191 VNNCREGHFHQVFNDFKEM-GRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIG 249
V R G +Q FK M G + +S T L A + D G Q+H + K G
Sbjct: 224 VGLDRNGKSYQALFFFKNMVGFSGVGISSTTLVCGLSAAAKI-LDFYAGIQIHCCMFKFG 282
Query: 250 L--ESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATK 307
DE+V LV Y C+ + DA +VF V KN+ W A+L G N +VEA +
Sbjct: 283 FCCGLDEFVSASLVTFYASCKRMGDACKVFGETV-CKNVVVWTALLTGCGLNDKHVEALE 341
Query: 308 -FLYLMKASGIQIQESLINDL 327
F +M+ + + + S + L
Sbjct: 342 VFSEMMRFNVVPNESSFTSAL 362
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 61/244 (25%), Positives = 106/244 (43%), Gaps = 9/244 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ + SC ++ A ++F E ++ W ++ G + E + +F+EMM+
Sbjct: 295 LVTFYASCKRMGDACKVFGETVCKNVVVWTALLTGCGLNDKHVEALEVFSEMMRFN---- 350
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+V L +CV ++E G+ +H K+G + SL+ Y K + DA
Sbjct: 351 -VVPNESSFTSALNSCVGLEDLEKGRVIHAAGIKMGLENAVYTGNSLVVMYSKCGFIGDA 409
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--G 229
VF + N V W + IV + G FKEM RE ++ + T + +L AC
Sbjct: 410 LCVFKGICEKNVVSWNSVIVGCAQHGCGTWALVLFKEMLREGVESDEITLTGLLSACSRS 469
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
G+ C A + L + Y C +VD+ G+C + +AE + + + N W
Sbjct: 470 GMLQKARCFFGYFARKRSMKLTVEHYA-C-MVDVLGRCGEVEEAEALATSMPVEANSMVW 527
Query: 290 NAML 293
+L
Sbjct: 528 LVLL 531
>gi|410109957|gb|AFV61058.1| pentatricopeptide repeat-containing protein 81, partial
[Acantholippia salsoloides]
Length = 402
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 79/290 (27%), Positives = 142/290 (48%), Gaps = 12/290 (4%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEM-PLRDFNSWAVMIVGYVDVADYQEC-ITLFAEMMKR 106
LN + + CG ++ ++++FD D +W M+ Y++ + +EC +F EM+++
Sbjct: 97 LNATITAYAECGCIEDSKRVFDSSNGYGDLVTWNSMLAAYIE-HNLEECGFNIFLEMVRQ 155
Query: 107 KKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF- 165
+ L A+ + ++ AC LGK +HGL+ K G + ++ +LI+ Y K
Sbjct: 156 R-----LEMDAYTLSSIISACFEDSQQSLGKSLHGLVIKKGLDQVTQISNALISMYLKSN 210
Query: 166 -RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
R +ED+ +F + + V W + + G F+ + + + + YTF++V
Sbjct: 211 SRNVEDSLKIFEHINVKDLVSWNXILTGLSQNGLSENALRLFQNIHLDHLVIDQYTFAAV 270
Query: 225 LKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
L++C + GRQ+H +VK G E +EYV L+ MY KC ++ DA+ FE K+
Sbjct: 271 LRSCSDLAT-LQLGRQIHVLVVKSGFEGNEYVASALIFMYSKCGIIEDAQESFE-SSHKE 328
Query: 285 NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
+WN+++ Y ++G A YLM I++ ACS I
Sbjct: 329 TSVTWNSIIFAYAQHGQGKVALDLFYLMTERHIKLDHVTFVAALTACSHI 378
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 77/286 (26%), Positives = 136/286 (47%), Gaps = 12/286 (4%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEM-MKRKKGHMLL 113
M+ C ++ A ++F M R+ SW +I GY ++ + Q CI LF M M+ K
Sbjct: 2 MYAKCRRVKDANKVFKYMQERNAVSWNALIGGYAEMGNLQRCIELFICMEMEGVKMDDAT 61
Query: 114 VFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADF 173
P +L + +L +Q+HG + K G ++ + I Y + C+ED+
Sbjct: 62 FAP------LLTLLHDAESYDLTRQLHGKIMKRGLEHENTVLNATITAYAECGCIEDSKR 115
Query: 174 VFSQLKRH-NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVD 232
VF + + V W + + FN F EM R+R++ ++YT SS++ AC D
Sbjct: 116 VFDSSNGYGDLVTWNSMLAAYIEHNLEECGFNIFLEMVRQRLEMDAYTLSSIISACFE-D 174
Query: 233 DDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGK--CRLLRDAERVFELIVDKKNIASWN 290
+ G+ +H ++K GL+ + L+ MY K R + D+ ++FE I + K++ SWN
Sbjct: 175 SQQSLGKSLHGLVIKKGLDQVTQISNALISMYLKSNSRNVEDSLKIFEHI-NVKDLVSWN 233
Query: 291 AMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+L G +NGL A + + + I + + +CS ++
Sbjct: 234 XILTGLSQNGLSENALRLFQNIHLDHLVIDQYTFAAVLRSCSDLAT 279
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 70/142 (49%), Gaps = 1/142 (0%)
Query: 160 NFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSY 219
+ Y K R ++DA+ VF ++ N V W A I G+ + F M E +K +
Sbjct: 1 DMYAKCRRVKDANKVFKYMQERNAVSWNALIGGYAEMGNLQRCIELFICMEMEGVKMDDA 60
Query: 220 TFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFEL 279
TF+ +L + + RQ+H I+K GLE + V + Y +C + D++RVF+
Sbjct: 61 TFAPLLTLLHDAES-YDLTRQLHGKIMKRGLEHENTVLNATITAYAECGCIEDSKRVFDS 119
Query: 280 IVDKKNIASWNAMLVGYIRNGL 301
++ +WN+ML YI + L
Sbjct: 120 SNGYGDLVTWNSMLAAYIEHNL 141
>gi|296085451|emb|CBI29183.3| unnamed protein product [Vitis vinifera]
Length = 285
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 58/92 (63%), Positives = 70/92 (76%), Gaps = 2/92 (2%)
Query: 215 KKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAE 274
K +T+SSVL+ACG + D G CGR +HA+ +K+GLESD YVQCGLVDMYGKC LL +A
Sbjct: 144 KYAPFTYSSVLRACGRMKDHGRCGRLIHASTIKLGLESDIYVQCGLVDMYGKCGLLVEAR 203
Query: 275 RVFELIVD--KKNIASWNAMLVGYIRNGLYVE 304
RVFE + D K NI WNAML GYIR+GL +E
Sbjct: 204 RVFETVSDTNKTNIVCWNAMLTGYIRHGLLME 235
>gi|222632692|gb|EEE64824.1| hypothetical protein OsJ_19680 [Oryza sativa Japonica Group]
Length = 688
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 79/265 (29%), Positives = 122/265 (46%), Gaps = 6/265 (2%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
++ + T N L ++ C +D A M RD +W +I YV +E I
Sbjct: 205 KLGLDSTPYVANTLATLYARCSDVDRALAAVSRMGTRDVAAWTTVISAYVQTGRAKEAIE 264
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
F M+ R++ + + V+ AC + LG+Q+H + G + S+ SL
Sbjct: 265 AFVRML-REESSVAASPNEYTYAAVIAACADIAWVCLGEQLHAQAARKGFACARSVANSL 323
Query: 159 INFYGKFR-CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRER--IK 215
+ Y + CL AD VF + + V W+A I +EG F F+EM +
Sbjct: 324 VTLYTRAAGCLSAADAVFRESVVKDVVSWSAIISGYAQEGLAEDAFALFREMRHHSGCPR 383
Query: 216 KNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAER 275
N +T +S+L C + GRQ+H V GLE ++ L+DMYGK + DA+
Sbjct: 384 PNEFTLASLLSVCATAASL-DAGRQLHTLAVAAGLEHHAMIRSALIDMYGKSGSMLDADI 442
Query: 276 VFELIVDKKNIASWNAMLVGYIRNG 300
VF V K ++ SW AM+VGY +G
Sbjct: 443 VFSHRV-KDDVVSWTAMIVGYAEHG 466
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 70/260 (26%), Positives = 119/260 (45%), Gaps = 33/260 (12%)
Query: 50 NRLLLMHV-SCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
N L+ ++ + G L A +F E ++D SW+ +I GY ++ LF EM +
Sbjct: 321 NSLVTLYTRAAGCLSAADAVFRESVVKDVVSWSAIISGYAQEGLAEDAFALFREM----R 376
Query: 109 GHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
H P + + +L C +++ G+Q+H L G + + +LI+ YGK
Sbjct: 377 HHSGCPRPNEFTLASLLSVCATAASLDAGRQLHTLAVAAGLEHHAMIRSALIDMYGKSGS 436
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
+ DAD VFS + + V WTA IV GH + F+EM +K + TF VL A
Sbjct: 437 MLDADIVFSHRVKDDVVSWTAMIVGYAEHGHSKKALELFQEMCHVGLKPDHVTFIGVLNA 496
Query: 228 CGGVDDDGNCGRQMHANIVKIGL-------------ESDEYVQCGLVDMYGKCRLLRDAE 274
C C HA V++GL + E+ C +VD+ G+ + +AE
Sbjct: 497 C--------C----HAGEVELGLRYLNEMNQIYGLYPAKEHYGC-VVDLLGRAGRINEAE 543
Query: 275 RVF-ELIVDKKNIASWNAML 293
+ ++ ++++ W ++L
Sbjct: 544 ELIGKIAANERDGVVWTSLL 563
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/276 (25%), Positives = 119/276 (43%), Gaps = 32/276 (11%)
Query: 43 KPTLLFLNRLLLMH--VSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLF 100
P L L+ L + +L A +LFD MP RD ++A ++ G+ D+ + LF
Sbjct: 20 PPPLSMLDHLARLKQLARSSRLADAHRLFDGMPRRDEVAYATLLAGHAAAGDFPGAMALF 79
Query: 101 AEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLIN 160
+ + R L +++ V K+C + +R + SL
Sbjct: 80 SRL--RASSPPLAPADPFVLSLVFKSCAAAAD----------------ARFLPHAASLHA 121
Query: 161 FYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYT 220
F CL A VF ++ N V WT + + R G H+ F EM + +SY
Sbjct: 122 FAAG--CLGLALKVFDEMPHKNVVSWTTLVASLTRAGRRHEALRRFSEMRASGVHCDSYA 179
Query: 221 FSSVLKACGGVDDDG--NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE 278
+++ L A D G + GR++HA K+GL+S YV L +Y +C D +R
Sbjct: 180 YAAALTA---CADAGLLSRGREVHAFCAKLGLDSTPYVANTLATLYARC---SDVDRALA 233
Query: 279 LI--VDKKNIASWNAMLVGYIRNGLYVEATKFLYLM 312
+ + +++A+W ++ Y++ G EA + M
Sbjct: 234 AVSRMGTRDVAAWTTVISAYVQTGRAKEAIEAFVRM 269
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 73/274 (26%), Positives = 117/274 (42%), Gaps = 17/274 (6%)
Query: 48 FLNRLLLMHV-SCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR 106
FL +H + G L A ++FDEMP ++ SW ++ E + F+EM R
Sbjct: 112 FLPHAASLHAFAAGCLGLALKVFDEMPHKNVVSWTTLVASLTRAGRRHEALRRFSEM--R 169
Query: 107 KKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166
G + ++ L AC + G++VH KLG + +L Y +
Sbjct: 170 ASG---VHCDSYAYAAALTACADAGLLSRGREVHAFCAKLGLDSTPYVANTLATLYARCS 226
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRER----IKKNSYTFS 222
++ A S++ + WT I + G + F M RE N YT++
Sbjct: 227 DVDRALAAVSRMGTRDVAAWTTVISAYVQTGRAKEAIEAFVRMLREESSVAASPNEYTYA 286
Query: 223 SVLKACGGVDDDGNC-GRQMHANIVKIGLESDEYVQCGLVDMYGKCR-LLRDAERVF-EL 279
+V+ AC D C G Q+HA + G V LV +Y + L A+ VF E
Sbjct: 287 AVIAAC--ADIAWVCLGEQLHAQAARKGFACARSVANSLVTLYTRAAGCLSAADAVFRES 344
Query: 280 IVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMK 313
+V K++ SW+A++ GY + GL +A M+
Sbjct: 345 VV--KDVVSWSAIISGYAQEGLAEDAFALFREMR 376
>gi|90399180|emb|CAJ86042.1| H0723C07.12 [Oryza sativa Indica Group]
Length = 886
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 83/281 (29%), Positives = 137/281 (48%), Gaps = 12/281 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ CG+L A ++FD MP R+ SW ++VG++ + +EC+ LF EM R G
Sbjct: 239 NNLIDMYAKCGKLHMAGEVFDGMPERNVVSWTALMVGFLHHGEARECLRLFGEM--RGSG 296
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
F + LKA C G Q+HG+ + G + + SL+ Y K R
Sbjct: 297 TSPNEF---TLSATLKA--CGGGTRAGVQIHGVCVRTGFEGHDVVANSLVVMYSKGRWTG 351
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKK-NSYTFSSVLKAC 228
DA VF + N W + I G F+EM R ++ + +TF+S+LKAC
Sbjct: 352 DARRVFDVIPSRNLATWNSMISGYAHAGQGRDSLLVFREMQRRHDEQPDEFTFASLLKAC 411
Query: 229 GGVDDDGNCGRQMHANIVKIGLE--SDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
G+ G Q+HA + G+ S+ + L+D+Y KC L A +VF+ + +++N
Sbjct: 412 SGL-GAAREGAQVHAAMAVRGVSPASNAILAGALLDVYVKCHRLPVAMQVFDGL-ERRNA 469
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDL 327
W ++VG+ + G EA +SG++ +++ +
Sbjct: 470 IQWTTVIVGHAQEGQVKEAMCLFRRFWSSGVRADGHVLSSV 510
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 86/288 (29%), Positives = 129/288 (44%), Gaps = 14/288 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L++M+ AR++FD +P R+ +W MI GY ++ + +F EM +R
Sbjct: 338 NSLVVMYSKGRWTGDARRVFDVIPSRNLATWNSMISGYAHAGQGRDSLLVFREMQRRHDE 397
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSS--RNISLTGSLINFYGKFRC 167
+ +LKAC G QVH + G S N L G+L++ Y K
Sbjct: 398 QP----DEFTFASLLKACSGLGAAREGAQVHAAMAVRGVSPASNAILAGALLDVYVKCHR 453
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
L A VF L+R N + WT IV + +EG + F+ ++ + + SSV+
Sbjct: 454 LPVAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEAMCLFRRFWSSGVRADGHVLSSVVAV 513
Query: 228 CGG---VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
V+ G+Q+H K D V LVDMY KC L +A R F + +
Sbjct: 514 FADFALVEQ----GKQVHCYTAKTPAGLDVSVANSLVDMYLKCGLTGEAGRRFREM-PAR 568
Query: 285 NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
N+ SW AM+ G ++G EA M+A G++ E L ACS
Sbjct: 569 NVVSWTAMINGVGKHGHGREAIDLFEEMQAEGVEADEVAYLALLSACS 616
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/221 (32%), Positives = 104/221 (47%), Gaps = 5/221 (2%)
Query: 119 IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL 178
+I +L+A ++ G Q+H L KLG + L +LI+ Y K L A VF +
Sbjct: 202 MIADLLRASARGSSLRGGVQLHAALMKLGFGSDTMLNNNLIDMYAKCGKLHMAGEVFDGM 261
Query: 179 KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCG 238
N V WTA +V G + F EM N +T S+ LKACGG G
Sbjct: 262 PERNVVSWTALMVGFLHHGEARECLRLFGEMRGSGTSPNEFTLSATLKACGG---GTRAG 318
Query: 239 RQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIR 298
Q+H V+ G E + V LV MY K R DA RVF+ ++ +N+A+WN+M+ GY
Sbjct: 319 VQIHGVCVRTGFEGHDVVANSLVVMYSKGRWTGDARRVFD-VIPSRNLATWNSMISGYAH 377
Query: 299 NGLYVEA-TKFLYLMKASGIQIQESLINDLRIACSSISASK 338
G ++ F + + Q E L ACS + A++
Sbjct: 378 AGQGRDSLLVFREMQRRHDEQPDEFTFASLLKACSGLGAAR 418
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/268 (26%), Positives = 120/268 (44%), Gaps = 29/268 (10%)
Query: 38 KRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECI 97
+ V+ + LL ++V C +L A Q+FD + R+ W +IVG+ +E +
Sbjct: 430 RGVSPASNAILAGALLDVYVKCHRLPVAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEAM 489
Query: 98 TLFAEMMK---RKKGHML----LVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSR 150
LF R GH+L VF + +V E GKQVH K +
Sbjct: 490 CLFRRFWSSGVRADGHVLSSVVAVFADFALV------------EQGKQVHCYTAKTPAGL 537
Query: 151 NISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMG 210
++S+ SL++ Y K +A F ++ N V WTA I + GH + + F+EM
Sbjct: 538 DVSVANSLVDMYLKCGLTGEAGRRFREMPARNVVSWTAMINGVGKHGHGREAIDLFEEMQ 597
Query: 211 RERIKKNSYTFSSVLKAC---GGVDDDGNCGRQMHANIV--KIGLESDEYVQCGLVDMYG 265
E ++ + + ++L AC G VD+ C R+ + I + E+ C +VD+ G
Sbjct: 598 AEGVEADEVAYLALLSACSHSGLVDE---C-RRYFSRICQDRRMRPKAEHYAC-MVDLLG 652
Query: 266 KCRLLRDAERVFELIVDKKNIASWNAML 293
+ LR+A+ + + + + W +L
Sbjct: 653 RAGELREAKELILSMPMEPTVGVWQTLL 680
>gi|15232648|ref|NP_190263.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207666|sp|Q9STF3.1|PP265_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g46790, chloroplastic; AltName: Full=Protein
CHLORORESPIRATORY REDUCTION 2; Flags: Precursor
gi|5541680|emb|CAB51186.1| putative protein [Arabidopsis thaliana]
gi|110741961|dbj|BAE98921.1| hypothetical protein [Arabidopsis thaliana]
gi|332644684|gb|AEE78205.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 657
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 92/330 (27%), Positives = 156/330 (47%), Gaps = 14/330 (4%)
Query: 9 TTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQL 68
+ Y LI C + + A + HI + + L +L+ M+ G +D AR++
Sbjct: 76 SQQTYELLILCCGHRSSLSDALRVHRHILDNGSDQDPFL-ATKLIGMYSDLGSVDYARKV 134
Query: 69 FDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACV 128
FD+ R W + +E + L+ +M + + + + VLKACV
Sbjct: 135 FDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNR-----IGVESDRFTYTYVLKACV 189
Query: 129 ---CTMNMEL-GKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTV 184
CT+N + GK++H L + G S ++ + +L++ Y +F C++ A +VF + N V
Sbjct: 190 ASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVV 249
Query: 185 VWTAKIVNNCREGHFHQVFNDFKEMGRER--IKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
W+A I + G + F+EM RE NS T SVL+AC + G+ +H
Sbjct: 250 SWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQ-GKLIH 308
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
I++ GL+S V LV MYG+C L +RVF+ + D+ ++ SWN+++ Y +G
Sbjct: 309 GYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDR-DVVSWNSLISSYGVHGYG 367
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIACS 332
+A + M A+G + ACS
Sbjct: 368 KKAIQIFEEMLANGASPTPVTFVSVLGACS 397
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/284 (26%), Positives = 126/284 (44%), Gaps = 13/284 (4%)
Query: 14 TCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMP 73
C+ ECT G E+ H+ +R + + L+ M+ G +D A +F MP
Sbjct: 187 ACVASECTVNHLMKGK-EIHAHLTRR-GYSSHVYIMTTLVDMYARFGCVDYASYVFGGMP 244
Query: 74 LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI-IVCVLKACVCTMN 132
+R+ SW+ MI Y E + F EMM+ K P + +V VL+AC
Sbjct: 245 VRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSS----PNSVTMVSVLQACASLAA 300
Query: 133 MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192
+E GK +HG + + G + + +L+ YG+ LE VF ++ + V W + I +
Sbjct: 301 LEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISS 360
Query: 193 NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG--GVDDDGNCGRQMHANIVKIGL 250
G+ + F+EM TF SVL AC G+ ++G R G+
Sbjct: 361 YGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGK--RLFETMWRDHGI 418
Query: 251 ESD-EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
+ E+ C +VD+ G+ L +A ++ + + + W ++L
Sbjct: 419 KPQIEHYAC-MVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLL 461
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 103/208 (49%), Gaps = 14/208 (6%)
Query: 138 QVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREG 197
+VH + GS ++ L LI Y ++ A VF + ++ VW A G
Sbjct: 98 RVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAG 157
Query: 198 HFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC---GRQMHANIVKIGLESDE 254
H +V + +M R ++ + +T++ VLKAC + N G+++HA++ + G S
Sbjct: 158 HGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHV 217
Query: 255 YVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATK-FLYLMK 313
Y+ LVDMY + + A VF + +N+ SW+AM+ Y +NG EA + F +M+
Sbjct: 218 YIMTTLVDMYARFGCVDYASYVFGGM-PVRNVVSWSAMIACYAKNGKAFEALRTFREMMR 276
Query: 314 ASGIQIQESLINDLRI-----ACSSISA 336
+ ++S N + + AC+S++A
Sbjct: 277 ----ETKDSSPNSVTMVSVLQACASLAA 300
>gi|357116286|ref|XP_003559913.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Brachypodium distachyon]
Length = 692
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 83/295 (28%), Positives = 141/295 (47%), Gaps = 18/295 (6%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVN-------IKPTLLFLNRLLLMHVSCGQLDTA 65
Y +IK C + G E +R+ V + P++ L+ M CG L A
Sbjct: 145 YPPVIKACA----ALGVVEQGRMVRENVEADVVRGVVAPSVFVQCALVDMFAKCGCLGEA 200
Query: 66 RQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLK 125
R +F+ M RD +W MI G V D+ + ++LF+ M R +G + + II V+
Sbjct: 201 RSVFESMLERDLAAWTAMIGGAVHAGDWLDAMSLFSRM--RSEG---FLADSVIIATVIP 255
Query: 126 ACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVV 185
AC + G +HG + G + ++ +L++ Y K CL AD VF + + V
Sbjct: 256 ACGRAKELRTGMVLHGCAVRCGVGDDTCVSNALVDMYCKCGCLGMADRVFWSIGFKDVVS 315
Query: 186 WTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANI 245
W+ I + G H N F EM +K NS T +S+L + + + G+++H
Sbjct: 316 WSTLIAGYSQNGKDHVSVNLFTEMVTAGLKPNSNTMASILPSLSEMKLFRH-GKEIHGFS 374
Query: 246 VKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
++ G + +++ +D Y + +R+AE V EL+ K+++ WN+M+ GY NG
Sbjct: 375 LRNGFDQSKFLGSAFIDFYSRQGSIREAEIVLELM-PKRDLVIWNSMVAGYAVNG 428
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/287 (24%), Positives = 130/287 (45%), Gaps = 15/287 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEM----MK 105
N L+ M+ CG L A ++F + +D SW+ +I GY + LF EM +K
Sbjct: 286 NALVDMYCKCGCLGMADRVFWSIGFKDVVSWSTLIAGYSQNGKDHVSVNLFTEMVTAGLK 345
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
M + P+ + + + GK++HG + G ++ L + I+FY +
Sbjct: 346 PNSNTMASILPSLSEMKLFRH---------GKEIHGFSLRNGFDQSKFLGSAFIDFYSRQ 396
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
+ +A+ V + + + V+W + + G+ F+ + + + + T SVL
Sbjct: 397 GSIREAEIVLELMPKRDLVIWNSMVAGYAVNGNTDSALCAFRALQKVGFRPDHVTVVSVL 456
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
C G+++HA +V+ + S V L+DMY KC L + +F+L+ D ++
Sbjct: 457 PVCNHHSRLIQ-GKELHAYVVRHYMSSVCSVSNALIDMYCKCCCLEKGKEIFQLVTD-RD 514
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
A++N ++ + ++G EA LMK GI + L +CS
Sbjct: 515 TATYNTLISSFGKHGHEDEAIMLFDLMKRDGIAPDKVTFVALLSSCS 561
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 97/201 (48%), Gaps = 6/201 (2%)
Query: 136 GKQVHGLLFKLGSSRNIS-LTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNC 194
+++H L G R + L L++ Y + A V + N+ W A I
Sbjct: 58 ARRLHAALLVGGHHRRGAVLAAQLVHAYARLGEAGRALSVLDGMPMRNSFAWNAAIKGLV 117
Query: 195 REGHFHQVFNDFKEMGRE-RIKKNSYTFSSVLKACG--GVDDDGNCGRQ-MHANIVKIGL 250
G F + + M R+ + + +T+ V+KAC GV + G R+ + A++V+ +
Sbjct: 118 DSGQFAEALETYWAMVRDGSVAADGFTYPPVIKACAALGVVEQGRMVRENVEADVVRGVV 177
Query: 251 ESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLY 310
+VQC LVDM+ KC L +A VFE ++++ ++A+W AM+ G + G +++A
Sbjct: 178 APSVFVQCALVDMFAKCGCLGEARSVFESMLER-DLAAWTAMIGGAVHAGDWLDAMSLFS 236
Query: 311 LMKASGIQIQESLINDLRIAC 331
M++ G +I + AC
Sbjct: 237 RMRSEGFLADSVIIATVIPAC 257
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/242 (23%), Positives = 97/242 (40%), Gaps = 35/242 (14%)
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR--KKGHMLLVFPA 117
G + A + + MP RD W M+ GY + + F + K + H+
Sbjct: 397 GSIREAEIVLELMPKRDLVIWNSMVAGYAVNGNTDSALCAFRALQKVGFRPDHV------ 450
Query: 118 WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQ 177
+V VL C + GK++H + + S S++ +LI+ Y K CLE +F
Sbjct: 451 -TVVSVLPVCNHHSRLIQGKELHAYVVRHYMSSVCSVSNALIDMYCKCCCLEKGKEIFQL 509
Query: 178 LKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC 237
+ +T + I + + GH + F M R+ I + TF ++L +C
Sbjct: 510 VTDRDTATYNTLISSFGKHGHEDEAIMLFDLMKRDGIAPDKVTFVALLSSCS-------- 561
Query: 238 GRQMHANIVKIGLE-------------SDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
HA +++ GL E+ C +VD+Y + L DA + + D+
Sbjct: 562 ----HAGLIEKGLHFYDIMLQDYNISPGKEHYSC-VVDLYSRSGKLDDAWKFVSSLQDEA 616
Query: 285 NI 286
I
Sbjct: 617 EI 618
>gi|30688521|ref|NP_850342.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|18491267|gb|AAL69458.1| At2g41080/T3K9.15 [Arabidopsis thaliana]
gi|330254831|gb|AEC09925.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 565
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 87/292 (29%), Positives = 136/292 (46%), Gaps = 10/292 (3%)
Query: 43 KPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAE 102
K + N L+ +V G L AR++FDEMP R +W MI G + +E ++LF E
Sbjct: 22 KKNYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFRE 81
Query: 103 MMKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINF 161
M H L P + + V ++ +G+Q+HG K G ++ + SL +
Sbjct: 82 M------HGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHM 135
Query: 162 YGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTF 221
Y + L+D + V + N V W I+ N + G V +K M + N TF
Sbjct: 136 YMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITF 195
Query: 222 SSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIV 281
+VL +C + G G+Q+HA +KIG S V L+ MY KC L DA + F
Sbjct: 196 VTVLSSCSDLAIRGQ-GQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSERE 254
Query: 282 DKKNIASWNAMLVGYIRNGLYVEATKFLYLM-KASGIQIQESLINDLRIACS 332
D+ + W++M+ Y +G EA + M + + ++I E +L ACS
Sbjct: 255 DEDEVM-WSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACS 305
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 85/187 (45%), Gaps = 4/187 (2%)
Query: 150 RNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEM 209
+N + LIN Y + L +A VF ++ W A I + + + F+EM
Sbjct: 23 KNYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREM 82
Query: 210 GRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRL 269
+ YT SV G+ + G+Q+H +K GLE D V L MY +
Sbjct: 83 HGLGFSPDEYTLGSVFSGSAGLRSV-SIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGK 141
Query: 270 LRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLY-LMKASGIQIQESLINDLR 328
L+D E V + +N+ +WN +++G +NG E +LY +MK SG + + +
Sbjct: 142 LQDGEIVIRSM-PVRNLVAWNTLIMGNAQNGC-PETVLYLYKMMKISGCRPNKITFVTVL 199
Query: 329 IACSSIS 335
+CS ++
Sbjct: 200 SSCSDLA 206
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 112/252 (44%), Gaps = 12/252 (4%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L+ + L M++ G+L + MP+R+ +W +I+G + + L+ +MMK
Sbjct: 126 LVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLY-KMMK 184
Query: 106 RKKGHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
+ P I V VL +C G+Q+H K+G+S +++ SLI+ Y K
Sbjct: 185 -----ISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSK 239
Query: 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRE-RIKKNSYTFSS 223
CL DA FS+ + + V+W++ I G + F M + ++ N F +
Sbjct: 240 CGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLN 299
Query: 224 VLKACG--GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIV 281
+L AC G+ D G M + K G + +VD+ G+ L AE + +
Sbjct: 300 LLYACSHSGLKDKGLELFDMM--VEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMP 357
Query: 282 DKKNIASWNAML 293
K +I W +L
Sbjct: 358 IKTDIVIWKTLL 369
>gi|356519224|ref|XP_003528273.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740,
chloroplastic-like [Glycine max]
Length = 805
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 91/341 (26%), Positives = 160/341 (46%), Gaps = 25/341 (7%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTL----LFLNRLLLMH 56
M +L L + +Y L++ C +++ A +L + KR PT +++L++++
Sbjct: 42 MHSLNLHVGPAIYGTLLQGCVYERALPLALQLHADVIKR---GPTFALNDFVISKLVILY 98
Query: 57 VSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP 116
CG + A +LF + P + SWA +I + +E LF + ++ G L
Sbjct: 99 AKCGASEPATRLFRDSPSPNVFSWAAIIGLHTRTGFCEE--ALFGYIKMQQDG---LPPD 153
Query: 117 AWIIVCVLKACVCTMNMELGKQVHGLLFK-LGSSRNISLTGSLINFYGKFRCLEDADFVF 175
+++ VLKAC + GK VH + K +G + + SL++ YGK +EDA VF
Sbjct: 154 NFVLPNVLKACGVLKWVRFGKGVHAFVVKTIGLKECVYVATSLVDMYGKCGAVEDAGKVF 213
Query: 176 SQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDG 235
++ N V W + +V + G + F+EM + ++ S AC + G
Sbjct: 214 DEMSERNDVTWNSMVVTYAQNGMNQEAIRVFREMRLQGVEVTLVALSGFFTACANSEAVG 273
Query: 236 NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
GRQ H V GLE D + +++ Y K L+ +AE VF + K++ +WN ++ G
Sbjct: 274 E-GRQGHGLAVVGGLELDNVLGSSIMNFYFKVGLIEEAEVVFRNMA-VKDVVTWNLVVAG 331
Query: 296 YIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
Y + G+ +A + +M+ G LR C ++SA
Sbjct: 332 YAQFGMVEKALEMCCVMREEG----------LRFDCVTLSA 362
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 83/282 (29%), Positives = 125/282 (44%), Gaps = 7/282 (2%)
Query: 36 IRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQE 95
+ K + +K + L+ M+ CG ++ A ++FDEM R+ +W M+V Y QE
Sbjct: 180 VVKTIGLKECVYVATSLVDMYGKCGAVEDAGKVFDEMSERNDVTWNSMVVTYAQNGMNQE 239
Query: 96 CITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLT 155
I +F EM + L+ + C V G+Q HGL G + L
Sbjct: 240 AIRVFREMRLQGVEVTLVALSGFFTACANSEAVGE-----GRQGHGLAVVGGLELDNVLG 294
Query: 156 GSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIK 215
S++NFY K +E+A+ VF + + V W + + G + M E ++
Sbjct: 295 SSIMNFYFKVGLIEEAEVVFRNMAVKDVVTWNLVVAGYAQFGMVEKALEMCCVMREEGLR 354
Query: 216 KNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAER 275
+ T S++L A D G + HA VK E D V G++DMY KC + A R
Sbjct: 355 FDCVTLSALL-AVAADTRDLVLGMKAHAYCVKNDFEGDVVVSSGIIDMYAKCGRMDCARR 413
Query: 276 VFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGI 317
VF V KK+I WN ML GL EA K + M+ +
Sbjct: 414 VFS-CVRKKDIVLWNTMLAACAEQGLSGEALKLFFQMQLESV 454
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 100/231 (43%), Gaps = 14/231 (6%)
Query: 12 MYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDE 71
++ ++ C Q S A +L ++ ++ P ++ N L+ GQ+ AR +F E
Sbjct: 425 LWNTMLAACAEQGLSGEALKLFFQMQLE-SVPPNVVSWNSLIFGFFKNGQVAEARNMFAE 483
Query: 72 M----PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCVLKA 126
M + + +W M+ G V + +F EM + + P + I L
Sbjct: 484 MCSSGVMPNLITWTTMMSGLVQNGFGSGAMMVFREMQD------VGIRPNSMSITSALSG 537
Query: 127 CVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVW 186
C ++ G+ +HG + + S++I + S+++ Y K L+ A VF V+
Sbjct: 538 CTSMALLKHGRAIHGYVMRRDLSQSIHIITSIMDMYAKCGSLDGAKCVFKMCSTKELYVY 597
Query: 187 TAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--GGVDDDG 235
A I G + FK+M +E I + T +SVL AC GG+ +G
Sbjct: 598 NAMISAYASHGQAREALVLFKQMEKEGIVPDHITLTSVLSACSHGGLMKEG 648
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/282 (22%), Positives = 109/282 (38%), Gaps = 46/282 (16%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+ CG++D AR++F + +D W M+ + E + LF +M V
Sbjct: 401 MYAKCGRMDCARRVFSCVRKKDIVLWNTMLAACAEQGLSGEALKLFFQMQLES------V 454
Query: 115 FPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFV 174
P N+ SLI + K + +A +
Sbjct: 455 PP----------------------------------NVVSWNSLIFGFFKNGQVAEARNM 480
Query: 175 FSQL----KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
F+++ N + WT + + G F+EM I+ NS + +S L C
Sbjct: 481 FAEMCSSGVMPNLITWTTMMSGLVQNGFGSGAMMVFREMQDVGIRPNSMSITSALSGCTS 540
Query: 231 VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWN 290
+ + GR +H +++ L ++ ++DMY KC L A+ VF++ K + +N
Sbjct: 541 MALLKH-GRAIHGYVMRRDLSQSIHIITSIMDMYAKCGSLDGAKCVFKM-CSTKELYVYN 598
Query: 291 AMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
AM+ Y +G EA M+ GI + + ACS
Sbjct: 599 AMISAYASHGQAREALVLFKQMEKEGIVPDHITLTSVLSACS 640
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/278 (19%), Positives = 109/278 (39%), Gaps = 42/278 (15%)
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI 119
G ++ A +F M ++D +W +++ GY ++ + + M R++G L F
Sbjct: 305 GLIEEAEVVFRNMAVKDVVTWNLVVAGYAQFGMVEKALEMCCVM--REEG---LRFDCVT 359
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
+ +L T ++ LG + H K ++ ++ +I+ Y K ++ A VFS ++
Sbjct: 360 LSALLAVAADTRDLVLGMKAHAYCVKNDFEGDVVVSSGIIDMYAKCGRMDCARRVFSCVR 419
Query: 180 RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC-- 237
+ + V+W + +G + F +M E + N +++S++ G +G
Sbjct: 420 KKDIVLWNTMLAACAEQGLSGEALKLFFQMQLESVPPNVVSWNSLIF---GFFKNGQVAE 476
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYI 297
R M A + G+ N+ +W M+ G +
Sbjct: 477 ARNMFAEMCSSGV--------------------------------MPNLITWTTMMSGLV 504
Query: 298 RNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
+NG A M+ GI+ I C+S++
Sbjct: 505 QNGFGSGAMMVFREMQDVGIRPNSMSITSALSGCTSMA 542
>gi|302799483|ref|XP_002981500.1| hypothetical protein SELMODRAFT_10313 [Selaginella moellendorffii]
gi|300150666|gb|EFJ17315.1| hypothetical protein SELMODRAFT_10313 [Selaginella moellendorffii]
Length = 296
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 80/295 (27%), Positives = 138/295 (46%), Gaps = 12/295 (4%)
Query: 41 NIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFN--SWAVMIVGYVDVADYQECIT 98
+++ ++ LL M+ CG ++ AR +FD++ +D + SW+ +I YV +E I
Sbjct: 8 DLRKSVFVGTALLNMYAKCGAIEQARAVFDQLTHKDKDVVSWSCIIAAYVQSGHCREAIN 67
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
LF + M K M +IV L AC ++ LG +H + +++ + +L
Sbjct: 68 LF-QRMDVKPNEM-------VIVSTLAACSGAKDLVLGMAIHARILSPDLRKSVFVGTAL 119
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
+N Y K +E A VF Q+ + V WTA I + G Q + M + R + N
Sbjct: 120 LNMYAKCGAIEQARAVFDQIPHKDVVSWTAMITAFAQRGDCGQALETLEGMIQARFQPNP 179
Query: 219 YTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE 278
TF + + AC + + GR++HA ++ +GL +Q LV MY K +A VF+
Sbjct: 180 VTFVAEITACSS-REFLDRGRKIHAAVIDLGLHGYITIQNALVSMYAKGGNAEEALSVFQ 238
Query: 279 LIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSS 333
+ D+ + SWN+M+ + + + M GI+ + + ACSS
Sbjct: 239 RMEDRNRV-SWNSMIAAFAASAQSCAVMGLFHGMNLEGIKPDDVSFLGVLSACSS 292
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 87/196 (44%), Gaps = 7/196 (3%)
Query: 140 HGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL--KRHNTVVWTAKIVNNCREG 197
H +F +++ + +L+N Y K +E A VF QL K + V W+ I + G
Sbjct: 1 HARIFFPDLRKSVFVGTALLNMYAKCGAIEQARAVFDQLTHKDKDVVSWSCIIAAYVQSG 60
Query: 198 HFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQ 257
H + N F+ M +K N S L AC G D G +HA I+ L +V
Sbjct: 61 HCREAINLFQRMD---VKPNEMVIVSTLAACSGAKDL-VLGMAIHARILSPDLRKSVFVG 116
Query: 258 CGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGI 317
L++MY KC + A VF+ I K++ SW AM+ + + G +A + L M +
Sbjct: 117 TALLNMYAKCGAIEQARAVFDQI-PHKDVVSWTAMITAFAQRGDCGQALETLEGMIQARF 175
Query: 318 QIQESLINDLRIACSS 333
Q ACSS
Sbjct: 176 QPNPVTFVAEITACSS 191
>gi|302807243|ref|XP_002985334.1| hypothetical protein SELMODRAFT_21174 [Selaginella moellendorffii]
gi|300146797|gb|EFJ13464.1| hypothetical protein SELMODRAFT_21174 [Selaginella moellendorffii]
Length = 459
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 81/299 (27%), Positives = 133/299 (44%), Gaps = 7/299 (2%)
Query: 35 HIRKRVNI-KPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADY 93
H R R + L+ L+ M+ SCG + AR++F RD S + M+
Sbjct: 93 HARLRSGGHESNLVVATALINMYSSCGSIAEAREVFSRTNSRDVVSMSSMVAALAGSGHG 152
Query: 94 QECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNIS 153
E I LF M + F A ++ C C C ++ LGKQ+H + G N+
Sbjct: 153 GEAILLFRRMDLEGIASNEITFVAALVAC----CDCPGSLALGKQIHERIIAGGLGSNVF 208
Query: 154 LTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRER 213
L SL+ YG+ + A+ VF ++R + W + + + GH + M E
Sbjct: 209 LANSLVTMYGRSGEVAVAEAVFRSIRRRSLTSWNSMLAAYTQNGHSSVALDVHVRMDHEG 268
Query: 214 IKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDA 273
+ + +TF ++L AC + GRQ+H +GL ++ +V L+DMYGK L +A
Sbjct: 269 VASDEFTFVTLLDACA-MAGTLQLGRQIHDRTAAMGLMANGFVATALLDMYGKRGSLGEA 327
Query: 274 ERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
VF+ ++ +W AM+ Y ++G EA + M G+ ++ ACS
Sbjct: 328 RAVFDRHC-TGSVVAWTAMVASYAQHGRSAEALELYGCMALEGLAPNSVTFVNILSACS 385
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 80/283 (28%), Positives = 125/283 (44%), Gaps = 6/283 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ + CG LD+A +F + R+ SW +MIV V D + L EM
Sbjct: 8 NNLVEAYGRCGDLDSATAVFLTIQDRNVFSWTIMIVASVQNGDGVLALRLLREMDCEGVA 67
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ F + +L A ++ G+++H L G N+ + +LIN Y +
Sbjct: 68 PDEMTFSS-----ILGALSGKRDLRQGREIHARLRSGGHESNLVVATALINMYSSCGSIA 122
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
+A VFS+ + V ++ + GH + F+ M E I N TF + L AC
Sbjct: 123 EAREVFSRTNSRDVVSMSSMVAALAGSGHGGEAILLFRRMDLEGIASNEITFVAALVACC 182
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
G+Q+H I+ GL S+ ++ LV MYG+ + AE VF I ++++ SW
Sbjct: 183 DCPGSLALGKQIHERIIAGGLGSNVFLANSLVTMYGRSGEVAVAEAVFRSI-RRRSLTSW 241
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
N+ML Y +NG A M G+ E L AC+
Sbjct: 242 NSMLAAYTQNGHSSVALDVHVRMDHEGVASDEFTFVTLLDACA 284
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 91/216 (42%), Gaps = 10/216 (4%)
Query: 25 DSAGAFELLNHIRKRV---NIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWA 81
D G+ L I +R+ + + N L+ M+ G++ A +F + R SW
Sbjct: 183 DCPGSLALGKQIHERIIAGGLGSNVFLANSLVTMYGRSGEVAVAEAVFRSIRRRSLTSWN 242
Query: 82 VMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHG 141
M+ Y + + M H + + V +L AC ++LG+Q+H
Sbjct: 243 SMLAAYTQNGHSSVALDVHVRM-----DHEGVASDEFTFVTLLDACAMAGTLQLGRQIHD 297
Query: 142 LLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQ 201
+G N + +L++ YGK L +A VF + + V WTA + + + G +
Sbjct: 298 RTAAMGLMANGFVATALLDMYGKRGSLGEARAVFDRHCTGSVVAWTAMVASYAQHGRSAE 357
Query: 202 VFNDFKEMGRERIKKNSYTFSSVLKACG--GVDDDG 235
+ M E + NS TF ++L AC G+ D G
Sbjct: 358 ALELYGCMALEGLAPNSVTFVNILSACSYYGMVDQG 393
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 82/182 (45%), Gaps = 2/182 (1%)
Query: 150 RNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEM 209
R+ L +L+ YG+ L+ A VF ++ N WT IV + + G +EM
Sbjct: 2 RDRFLCNNLVEAYGRCGDLDSATAVFLTIQDRNVFSWTIMIVASVQNGDGVLALRLLREM 61
Query: 210 GRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRL 269
E + + TFSS+L A G D GR++HA + G ES+ V L++MY C
Sbjct: 62 DCEGVAPDEMTFSSILGALSG-KRDLRQGREIHARLRSGGHESNLVVATALINMYSSCGS 120
Query: 270 LRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRI 329
+ +A VF + +++ S ++M+ +G EA M GI E +
Sbjct: 121 IAEAREVFSR-TNSRDVVSMSSMVAALAGSGHGGEAILLFRRMDLEGIASNEITFVAALV 179
Query: 330 AC 331
AC
Sbjct: 180 AC 181
>gi|147798405|emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera]
Length = 748
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 85/279 (30%), Positives = 135/279 (48%), Gaps = 18/279 (6%)
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AW 118
G LD AR+LF+E+P+RD SW MI GY ++E + F EM + V P
Sbjct: 212 GCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRAN------VAPNES 265
Query: 119 IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL 178
+V VL AC + ++ELG V + G N+ L +LI+ Y K L+ A +F +
Sbjct: 266 TMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGI 325
Query: 179 KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC---GGVDDDG 235
+ + W I + + F++M + ++ N TF S+L AC G +D
Sbjct: 326 CEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALD--- 382
Query: 236 NCGRQMHANIVK--IGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
G+ +HA I K +GL ++ + L+DMY KC + A++VF + K++ SWNAM+
Sbjct: 383 -LGKWIHAYIDKKFLGL-TNTSLWTSLIDMYAKCGNIEAAKQVFAGM-KPKSLGSWNAMI 439
Query: 294 VGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
G +G A + M+ G + + + ACS
Sbjct: 440 SGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACS 478
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 86/276 (31%), Positives = 136/276 (49%), Gaps = 19/276 (6%)
Query: 27 AGAFELLNHIRKRV---NIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVM 83
+G+ EL N +R + + L +N L+ M+ CG LD AR LF+ + +D SW VM
Sbjct: 277 SGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVM 336
Query: 84 IVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLL 143
I GY + Y+E + LF +M + + F V +L AC ++LGK +H +
Sbjct: 337 IGGYSHMNSYKEALALFRKMQQSNVEPNDVTF-----VSILPACAYLGALDLGKWIHAYI 391
Query: 144 FK--LGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQ 201
K LG + N SL SLI+ Y K +E A VF+ +K + W A I GH +
Sbjct: 392 DKKFLGLT-NTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANM 450
Query: 202 VFNDFKEMGRERIKKNSYTFSSVLKAC---GGVDDDGNCGRQMHANIVKIGLESDEYVQC 258
F++M E + + TF VL AC G V+ GRQ +++V+ S +
Sbjct: 451 ALELFRQMRDEGFEPDDITFVGVLSACSHAGLVE----LGRQCFSSMVEDYDISPKLQHY 506
Query: 259 G-LVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
G ++D+ G+ L +AE + + + K + A W ++L
Sbjct: 507 GCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLL 542
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 86/310 (27%), Positives = 125/310 (40%), Gaps = 42/310 (13%)
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI 119
G L A LF+ + + W MI G + I + M+ FP
Sbjct: 80 GNLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFP--- 136
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK--------------- 164
+LK+C + GKQ+HG + KLG + + SLIN Y +
Sbjct: 137 --FLLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSS 194
Query: 165 ---------------FR-CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKE 208
R CL+DA +F ++ + V W A I + G F + F+E
Sbjct: 195 LRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQE 254
Query: 209 MGRERIKKNSYTFSSVLKACG--GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGK 266
M R + N T +VL AC G + GN R I GL S+ + L+DMY K
Sbjct: 255 MKRANVAPNESTMVTVLSACAQSGSLELGNWVRSW---IEDHGLGSNLRLVNALIDMYSK 311
Query: 267 CRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLIND 326
C L A +FE I + K+I SWN M+ GY Y EA M+ S ++ +
Sbjct: 312 CGDLDKARDLFEGICE-KDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVS 370
Query: 327 LRIACSSISA 336
+ AC+ + A
Sbjct: 371 ILPACAYLGA 380
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 68/245 (27%), Positives = 105/245 (42%), Gaps = 38/245 (15%)
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINF--YGKFRCLEDADFVFSQL 178
+ +L C N+ KQ+H + K G LI F F L A +F +
Sbjct: 36 LTLLSTCKSFQNL---KQIHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESI 92
Query: 179 KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCG 238
++ N +W I N + + M ++ NSYTF +LK+C V G
Sbjct: 93 EQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQE-G 151
Query: 239 RQMHANIVKIGLESDEYVQCGLVDMY------GKCRL----------------------- 269
+Q+H +++K+GLESD +V L++MY G L
Sbjct: 152 KQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLR 211
Query: 270 --LRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDL 327
L DA R+FE I ++ SWNAM+ GY ++G + EA F MK + + ES + +
Sbjct: 212 GCLDDARRLFEEI-PVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTV 270
Query: 328 RIACS 332
AC+
Sbjct: 271 LSACA 275
>gi|297742226|emb|CBI34375.3| unnamed protein product [Vitis vinifera]
Length = 814
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 80/272 (29%), Positives = 133/272 (48%), Gaps = 7/272 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ CG++ AR +FDEM D SW +I GY + ++ + +F++M
Sbjct: 356 NALIFMYGKCGEMVAARHIFDEMLCGDSVSWNSLIAGYAENGLMKQALKVFSQMRD---- 411
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
LL + + +L+ + E Q+H + KLG + S+ LI YGK +
Sbjct: 412 -YLLQPNKYTLASILEVAANSNFPEQAMQIHSYIVKLGFIVDDSMLSCLITAYGKCNMIC 470
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
++ V+S + + N + A G F+ R + + T S VLKACG
Sbjct: 471 ESKRVYSDISQINVLHLNAMAATLVHAGCHADALKLFQTGWRLHQEVDCITLSIVLKACG 530
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ D GR +H+ +K G+ D +V+ ++D+Y KC + +A + F + V K N+ +W
Sbjct: 531 ALTDL-EYGRNIHSMALKSGMSQDNFVESAVIDVYCKCGTVDEAAKTF-MNVSKNNLVAW 588
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQE 321
NAM++GY ++G Y E + M GIQ E
Sbjct: 589 NAMVMGYAQHGCYHEVFELFNKMLELGIQPDE 620
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/260 (27%), Positives = 120/260 (46%), Gaps = 10/260 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ CG A ++FDEM D SW I D E LF ++ G
Sbjct: 258 NALMNMYSRCGSKSDAIKMFDEMTEPDVVSWTERIGAAYDAI---EAFELFRLVLS---G 311
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+M + ++++ VL A ++ G+Q+ GL K G S+ +LI YGK +
Sbjct: 312 NMEV--NEYMLINVLSAMREPKLLKSGRQIQGLCQKAGYLLVASVNNALIFMYGKCGEMV 369
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A +F ++ ++V W + I G Q F +M ++ N YT +S+L+
Sbjct: 370 AARHIFDEMLCGDSVSWNSLIAGYAENGLMKQALKVFSQMRDYLLQPNKYTLASILEVAA 429
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ Q+H+ IVK+G D+ + L+ YGKC ++ +++RV+ I + N+
Sbjct: 430 NSNFPEQ-AMQIHSYIVKLGFIVDDSMLSCLITAYGKCNMICESKRVYSDI-SQINVLHL 487
Query: 290 NAMLVGYIRNGLYVEATKFL 309
NAM + G + +A K
Sbjct: 488 NAMAATLVHAGCHADALKLF 507
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 81/309 (26%), Positives = 139/309 (44%), Gaps = 23/309 (7%)
Query: 34 NHIRKRVNIKPTLL---FLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDV 90
N + V +K LL ++ LL + G +D+A + F E + D W M+ G+V
Sbjct: 137 NEVAHGVCLKMGLLNGFVVSGLLDGYAKLGDVDSAEKCFKEFYIADSVVWTAMVCGFVWN 196
Query: 91 ADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLG--S 148
++++ +F EM G L F ++ L ++ G+QV GL K+G
Sbjct: 197 GEFEKGREVFVEMRGLGLGLELNEFSLTSVLGALS------DVREGEQVFGLSVKMGLLC 250
Query: 149 SRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFH---QVFND 205
+I L +L+N Y + DA +F ++ + V WT +I G + + F
Sbjct: 251 GCSIHLNNALMNMYSRCGSKSDAIKMFDEMTEPDVVSWTERI------GAAYDAIEAFEL 304
Query: 206 FKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYG 265
F+ + ++ N Y +VL A GRQ+ K G V L+ MYG
Sbjct: 305 FRLVLSGNMEVNEYMLINVLSAMRE-PKLLKSGRQIQGLCQKAGYLLVASVNNALIFMYG 363
Query: 266 KCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQE-SLI 324
KC + A +F+ ++ ++ SWN+++ GY NGL +A K M+ +Q + +L
Sbjct: 364 KCGEMVAARHIFDEMLCGDSV-SWNSLIAGYAENGLMKQALKVFSQMRDYLLQPNKYTLA 422
Query: 325 NDLRIACSS 333
+ L +A +S
Sbjct: 423 SILEVAANS 431
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 91/179 (50%), Gaps = 12/179 (6%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
VLKAC ++E G+ +H + K G S++ + ++I+ Y K +++A F + ++N
Sbjct: 525 VLKACGALTDLEYGRNIHSMALKSGMSQDNFVESAVIDVYCKCGTVDEAAKTFMNVSKNN 584
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--GGVDDDG----N 236
V W A ++ + G +H+VF F +M I+ + T+ VL +C G+ ++ +
Sbjct: 585 LVAWNAMVMGYAQHGCYHEVFELFNKMLELGIQPDEITYLGVLNSCCHAGLVNEAHTYLS 644
Query: 237 CGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
++H + + E+ C ++D++G+ LL DA+R + + + W +L G
Sbjct: 645 SMLELHGVVPCL-----EHYAC-MIDLFGRVGLLEDAKRTIDQMPIMPDAQIWQILLSG 697
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/270 (23%), Positives = 123/270 (45%), Gaps = 23/270 (8%)
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI 119
G AR+ + P D SW +I GY LF + R+ G L +
Sbjct: 69 GDFARARRFLLDTPYPDTVSWNSLISGYARFRQPGPVFDLFNGL--RRSG---LSPDEFS 123
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
+ ++K C +E + HG+ K+G ++G L++ Y K ++ A+ F +
Sbjct: 124 LSSLVKGCGV---LEQNEVAHGVCLKMGLLNGFVVSG-LLDGYAKLGDVDSAEKCFKEFY 179
Query: 180 RHNTVVWTAKIVNNCREGHFH---QVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGN 236
++VVWTA + G F +VF + + +G ++ N ++ +SVL A V +
Sbjct: 180 IADSVVWTAMVCGFVWNGEFEKGREVFVEMRGLGL-GLELNEFSLTSVLGALSDVRE--- 235
Query: 237 CGRQMHANIVKIGL--ESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLV 294
G Q+ VK+GL ++ L++MY +C DA ++F+ + + ++ SW +
Sbjct: 236 -GEQVFGLSVKMGLLCGCSIHLNNALMNMYSRCGSKSDAIKMFDEMTE-PDVVSWTER-I 292
Query: 295 GYIRNGLYVEATKFLYLMKASGIQIQESLI 324
G + +EA + L+ + +++ E ++
Sbjct: 293 GAAYDA--IEAFELFRLVLSGNMEVNEYML 320
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 88/198 (44%), Gaps = 6/198 (3%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
L+A ++ L Q + L K G + + L+ ++N + A +
Sbjct: 26 ALRASASLLHPPLTDQSYALFLKSGFALDAFLSSFIVNRFAISGDFARARRFLLDTPYPD 85
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
TV W + I R VF+ F + R + + ++ SS++K CG ++ + H
Sbjct: 86 TVSWNSLISGYARFRQPGPVFDLFNGLRRSGLSPDEFSLSSLVKGCGVLEQN----EVAH 141
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
+K+GL + +V GL+D Y K + AE+ F+ ++ W AM+ G++ NG +
Sbjct: 142 GVCLKMGL-LNGFVVSGLLDGYAKLGDVDSAEKCFKEFYIADSVV-WTAMVCGFVWNGEF 199
Query: 303 VEATKFLYLMKASGIQIQ 320
+ + M+ G+ ++
Sbjct: 200 EKGREVFVEMRGLGLGLE 217
>gi|224092360|ref|XP_002309575.1| predicted protein [Populus trichocarpa]
gi|222855551|gb|EEE93098.1| predicted protein [Populus trichocarpa]
Length = 653
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 85/288 (29%), Positives = 145/288 (50%), Gaps = 15/288 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N ++ M+ CG+++ A +F+ MP+R+ SW MI GY ++ + LF +M ++ G
Sbjct: 112 NSIIDMYSKCGRINEAACMFEVMPVRNLISWNAMIAGYTVAGFCEKALVLFQKM--QEVG 169
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLG--SSRNISLTGSLINFYGKFRC 167
L F LKAC ++ G Q+H L G S N ++ G+LI+ Y K
Sbjct: 170 GFLDEFT---FTSTLKACSDLGAIKEGNQIHAFLITGGFLYSVNTAVAGALIDLYVKCGK 226
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
L A VFS ++ + + WTA I+ +EG+ + F+++ I+ + + SS++
Sbjct: 227 LFMARRVFSHIEEKHVISWTALILGYAQEGNLAESMELFRQLRESSIQVDGFILSSMM-- 284
Query: 228 CGGVDDDGNC---GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
GV D G+QMHA +K+ D V ++DMY KC ++ +AER+F + +
Sbjct: 285 --GVFADFALVQQGKQMHAFAIKVPSGVDISVCNSILDMYLKCGMINEAERLFSEM-PAR 341
Query: 285 NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
N+ SW M+ GY ++GL EA + M+ + + + + CS
Sbjct: 342 NVISWTVMITGYGKHGLGKEAIRLFDEMQLDSTEPDDVTYLAVLLGCS 389
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 79/286 (27%), Positives = 140/286 (48%), Gaps = 13/286 (4%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L+ N L++M+ CG+L A +FD M R+ SW ++ G++ + E + LF++M
Sbjct: 7 LMLSNDLIVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLLFSKM-- 64
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
G + + LKAC +++G+Q+H + K G + S+I+ Y K
Sbjct: 65 ---GLSGVKPNDFTFSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVVGNSIIDMYSKC 121
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
+ +A +F + N + W A I G + F++M + +TF+S L
Sbjct: 122 GRINEAACMFEVMPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEFTFTSTL 181
Query: 226 KACG--GVDDDGNCGRQMHANIVKIGL--ESDEYVQCGLVDMYGKCRLLRDAERVFELIV 281
KAC G +GN Q+HA ++ G + V L+D+Y KC L A RVF I
Sbjct: 182 KACSDLGAIKEGN---QIHAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMARRVFSHI- 237
Query: 282 DKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDL 327
++K++ SW A+++GY + G E+ + ++ S IQ+ +++ +
Sbjct: 238 EEKHVISWTALILGYAQEGNLAESMELFRQLRESSIQVDGFILSSM 283
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 99/196 (50%), Gaps = 8/196 (4%)
Query: 146 LGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFND 205
+G ++ L+ LI YGK L A VF ++ + N V WTA + + + G+ +
Sbjct: 1 MGFGFDLMLSNDLIVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLL 60
Query: 206 FKEMGRERIKKNSYTFSSVLKACG---GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVD 262
F +MG +K N +TFS+ LKACG G+D GRQ+H VK G + V ++D
Sbjct: 61 FSKMGLSGVKPNDFTFSTNLKACGLLNGLD----IGRQIHDICVKTGFDMVNVVGNSIID 116
Query: 263 MYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQES 322
MY KC + +A +FE ++ +N+ SWNAM+ GY G +A M+ G + E
Sbjct: 117 MYSKCGRINEAACMFE-VMPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEF 175
Query: 323 LINDLRIACSSISASK 338
ACS + A K
Sbjct: 176 TFTSTLKACSDLGAIK 191
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 57/255 (22%), Positives = 116/255 (45%), Gaps = 31/255 (12%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ ++V CG+L AR++F + + SW +I+GY + E + LF ++ +
Sbjct: 217 LIDLYVKCGKLFMARRVFSHIEEKHVISWTALILGYAQEGNLAESMELFRQLRESS---- 272
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+ +I+ ++ ++ GKQ+H K+ S +IS+ S+++ Y K + +A
Sbjct: 273 -IQVDGFILSSMMGVFADFALVQQGKQMHAFAIKVPSGVDISVCNSILDMYLKCGMINEA 331
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
+ +FS++ N + WT I + G + F EM + + + T+ +VL C
Sbjct: 332 ERLFSEMPARNVISWTVMITGYGKHGLGKEAIRLFDEMQLDSTEPDDVTYLAVLLGCS-- 389
Query: 232 DDDGNCGRQMHANIVKIGLE-------------SDEYVQCGLVDMYGKCRLLRDAERVFE 278
H+ +V+ G E E+ C +VD+ G+ L++A+ + +
Sbjct: 390 ----------HSGLVEKGQEYFSRLCSYHGIKARVEHYAC-MVDLLGRAGRLKEAKNLVD 438
Query: 279 LIVDKKNIASWNAML 293
+ + N+ W +L
Sbjct: 439 SMPLEANVGIWQTLL 453
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Query: 248 IGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATK 307
+G D + L+ MYGKC L A VF+ ++ K+N+ SW A++ G+I+NG +E+
Sbjct: 1 MGFGFDLMLSNDLIVMYGKCGRLGVACDVFDRML-KRNVVSWTALMCGHIQNGNPLESLL 59
Query: 308 FLYLMKASGIQIQESLINDLRIACSSISASKIN 340
M SG++ + + AC ++ I
Sbjct: 60 LFSKMGLSGVKPNDFTFSTNLKACGLLNGLDIG 92
>gi|449475140|ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
gi|449522468|ref|XP_004168248.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
Length = 574
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 94/323 (29%), Positives = 150/323 (46%), Gaps = 15/323 (4%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRK-RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDE 71
Y L++ C +K +L H R +V I L +L+ ++ C L A LFD
Sbjct: 4 YASLLQSCVVRKAIEPGKQL--HARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDR 61
Query: 72 MPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTM 131
+ R+ W VMI GY Y+ I+L+ +M R G LV + VLKAC
Sbjct: 62 ISKRNLFLWNVMIRGYAWNGPYELAISLYYQM--RDYG---LVPDKFTFPFVLKACSALS 116
Query: 132 NMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIV 191
ME GK++H + + G ++ + +LI+ Y K C+E A VF ++ + V W + +
Sbjct: 117 AMEEGKKIHKDVIRSGLESDVFVGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLA 176
Query: 192 NNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDG--NCGRQMHANIVKIG 249
+ G + + M +K TF + A D+G G+++H + G
Sbjct: 177 TYSQNGQPDESLALCRVMAFNGLKPTEGTFVISIAASA---DNGLLPQGKELHGYSWRHG 233
Query: 250 LESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFL 309
ES++ V+ L+DMY K + A +FEL+ ++K + SWNAM+ GY +G EA
Sbjct: 234 FESNDKVKTALMDMYAKSGSVNVARSLFELL-EEKRVVSWNAMITGYAMHGHANEALDLF 292
Query: 310 YLMKASGIQIQESLINDLRIACS 332
MK + + + L ACS
Sbjct: 293 KEMKGKVLPDHITFVGVL-AACS 314
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 114/261 (43%), Gaps = 18/261 (6%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R ++ + L+ M+ CG +++ARQ+FD++ RD W M+ Y E +
Sbjct: 130 RSGLESDVFVGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLATYSQNGQPDESLA 189
Query: 99 LFAEM----MKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISL 154
L M +K +G V + A + GK++HG ++ G N +
Sbjct: 190 LCRVMAFNGLKPTEG---------TFVISIAASADNGLLPQGKELHGYSWRHGFESNDKV 240
Query: 155 TGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERI 214
+L++ Y K + A +F L+ V W A I GH ++ + FKEM + ++
Sbjct: 241 KTALMDMYAKSGSVNVARSLFELLEEKRVVSWNAMITGYAMHGHANEALDLFKEM-KGKV 299
Query: 215 KKNSYTFSSVLKAC--GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRD 272
+ TF VL AC GG+ ++G + + I Y C ++D+ G C L +
Sbjct: 300 LPDHITFVGVLAACSHGGLLNEGKMHFRSMISDFNIWPTVQHYT-C-MIDLLGHCGRLEE 357
Query: 273 AERVFELIVDKKNIASWNAML 293
A ++ + + + W A+L
Sbjct: 358 AYKLIMEMRVEPDAGVWGALL 378
>gi|302803813|ref|XP_002983659.1| hypothetical protein SELMODRAFT_328 [Selaginella moellendorffii]
gi|300148496|gb|EFJ15155.1| hypothetical protein SELMODRAFT_328 [Selaginella moellendorffii]
Length = 917
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 79/270 (29%), Positives = 129/270 (47%), Gaps = 7/270 (2%)
Query: 47 LFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR 106
L N + M+ CG ++ A +F + SW ++ + +Q+ +F M +
Sbjct: 38 LVQNATIHMYGKCGCVEDAVSVFQSLDHPSQVSWNSLLAAFARDGQFQQAFQIFQRMKLQ 97
Query: 107 KKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166
+ F V VL C ++ GK +HG + + G RN+ + SLI YGK
Sbjct: 98 GLAPDRITF-----VTVLDGCSAIGDLSRGKLLHGFVLEAGLERNVMVGTSLIKMYGKCG 152
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
C+EDA VF +L + V WT+ I+ + + F M + N T+++ +
Sbjct: 153 CVEDARRVFDKLALQDVVSWTSMIMTYVQHDRCVEALELFHRMRPSGVLPNRITYATAIS 212
Query: 227 ACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
AC V+ + G+ +H+ +++ G ESD V C +V+MYGKC L DA VFE + N
Sbjct: 213 ACAHVESMAD-GKLIHSQVLEDGFESDVVVSCAIVNMYGKCGSLEDAREVFERM-PHPNT 270
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASG 316
SWNA++ ++G VEA + M+ G
Sbjct: 271 VSWNAIVAACTQHGCCVEALWYFQRMQLQG 300
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/308 (24%), Positives = 139/308 (45%), Gaps = 11/308 (3%)
Query: 31 ELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDV 90
ELL+ + L+ N ++ M+ SCG++D A F M RD SW +I G+
Sbjct: 326 ELLHECILQCGYDTHLIVGNCIMTMYSSCGRIDNAAAFFSTMVERDAISWNTIISGHAQA 385
Query: 91 ADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSR 150
E + LF M+ + + + ++ T M+ K + L+ + G
Sbjct: 386 GFCDEAVHLFRRMLAEG-----ITPDKFTFISIIDG---TARMQEAKILSELMVESGVEL 437
Query: 151 NISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMG 210
++ L +LIN + ++ + +A +F +K + V+WT+ I + + G + M
Sbjct: 438 DVFLVSALINMHSRYGNVREARSLFDDMKDRDIVMWTSIISSYVQHGSSDDALGCTRLMR 497
Query: 211 RERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLL 270
E + N +T + L AC + G+ +HA+ ++ G + V L++MY KC L
Sbjct: 498 LEGLMGNDFTLVTALNACASLTALSE-GKLIHAHAIERGFAASPAVGNALINMYAKCGCL 556
Query: 271 RDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIA 330
+A+RVF KN+ SWN + Y++ + EA + M+ G++ + +
Sbjct: 557 EEADRVFHQC--GKNLVSWNTIAAAYVQRDKWREALQLFQEMQLEGLKADKVSFVTVLNG 614
Query: 331 CSSISASK 338
CSS S +
Sbjct: 615 CSSASEGR 622
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 81/289 (28%), Positives = 136/289 (47%), Gaps = 10/289 (3%)
Query: 31 ELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDV 90
+LL+ ++ ++ L+ M+ CG ++ AR++FD++ L+D SW MI+ YV
Sbjct: 123 KLLHGFVLEAGLERNVMVGTSLIKMYGKCGCVEDARRVFDKLALQDVVSWTSMIMTYVQH 182
Query: 91 ADYQECITLFAEMMKRKKGHMLLVFPAWII-VCVLKACVCTMNMELGKQVHGLLFKLGSS 149
E + LF M R G V P I + AC +M GK +H + + G
Sbjct: 183 DRCVEALELFHRM--RPSG----VLPNRITYATAISACAHVESMADGKLIHSQVLEDGFE 236
Query: 150 RNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEM 209
++ ++ +++N YGK LEDA VF ++ NTV W A + + G + F+ M
Sbjct: 237 SDVVVSCAIVNMYGKCGSLEDAREVFERMPHPNTVSWNAIVAACTQHGCCVEALWYFQRM 296
Query: 210 GRE-RIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCR 268
+ I + TF ++L AC G +H I++ G ++ V ++ MY C
Sbjct: 297 QLQGGITPDKVTFITILNACSS-PATLTFGELLHECILQCGYDTHLIVGNCIMTMYSSCG 355
Query: 269 LLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGI 317
+ +A F +V++ I SWN ++ G+ + G EA M A GI
Sbjct: 356 RIDNAAAFFSTMVERDAI-SWNTIISGHAQAGFCDEAVHLFRRMLAEGI 403
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/284 (25%), Positives = 128/284 (45%), Gaps = 11/284 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ CG L+ A ++F + ++ SW + YV ++E + LF EM
Sbjct: 544 NALINMYAKCGCLEEADRVFHQCG-KNLVSWNTIAAAYVQRDKWREALQLFQEMQLEGLK 602
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ F V VL C G+++H +L + G + ++ +L+N Y + L+
Sbjct: 603 ADKVSF-----VTVLNGCSSASE---GRKIHNILLETGMESDHIVSTALLNMYTASKSLD 654
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
+A +FS+++ + V W A I G + F+ M E + + +F +VL A
Sbjct: 655 EASRIFSRMEFRDIVSWNAMIAGKAEHGLSREAIQMFQRMQLEGVAPDKISFVTVLNAFS 714
Query: 230 GVDDDG-NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
G R + I G E+D V +V M+G+ L +A R FE I +++ AS
Sbjct: 715 GSSPSSLKQARLVEKLISDQGYETDTIVGNAIVSMFGRSGRLAEARRAFERI-RERDAAS 773
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
WN ++ + ++G +A K M+ + + + ACS
Sbjct: 774 WNVIVTAHAQHGEVEQALKLFRRMQQESSRPDSITLVSVLSACS 817
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 105/204 (51%), Gaps = 7/204 (3%)
Query: 114 VFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADF 173
F A + +C K+ + G+ VH + R+ + + I+ YGK C+EDA
Sbjct: 4 TFLALLGLCAKKSAIAE-----GRFVHSRVEASEFRRDDLVQNATIHMYGKCGCVEDAVS 58
Query: 174 VFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDD 233
VF L + V W + + R+G F Q F F+ M + + + TF +VL C + D
Sbjct: 59 VFQSLDHPSQVSWNSLLAAFARDGQFQQAFQIFQRMKLQGLAPDRITFVTVLDGCSAIGD 118
Query: 234 DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
G+ +H +++ GLE + V L+ MYGKC + DA RVF+ + +++ SW +M+
Sbjct: 119 LSR-GKLLHGFVLEAGLERNVMVGTSLIKMYGKCGCVEDARRVFDKLA-LQDVVSWTSMI 176
Query: 294 VGYIRNGLYVEATKFLYLMKASGI 317
+ Y+++ VEA + + M+ SG+
Sbjct: 177 MTYVQHDRCVEALELFHRMRPSGV 200
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 58/283 (20%), Positives = 133/283 (46%), Gaps = 11/283 (3%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+ CG L+ AR++F+ MP + SW ++ E + F + M+ + G +
Sbjct: 248 MYGKCGSLEDAREVFERMPHPNTVSWNAIVAACTQHGCCVEALWYF-QRMQLQGG----I 302
Query: 115 FPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADF 173
P + + +L AC + G+ +H + + G ++ + ++ Y +++A
Sbjct: 303 TPDKVTFITILNACSSPATLTFGELLHECILQCGYDTHLIVGNCIMTMYSSCGRIDNAAA 362
Query: 174 VFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDD 233
FS + + + W I + + G + + F+ M E I + +TF S++ + +
Sbjct: 363 FFSTMVERDAISWNTIISGHAQAGFCDEAVHLFRRMLAEGITPDKFTFISIIDGTARMQE 422
Query: 234 DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
+ + +V+ G+E D ++ L++M+ + +R+A +F+ + D ++I W +++
Sbjct: 423 ----AKILSELMVESGVELDVFLVSALINMHSRYGNVREARSLFDDMKD-RDIVMWTSII 477
Query: 294 VGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
Y+++G +A LM+ G+ + + AC+S++A
Sbjct: 478 SSYVQHGSSDDALGCTRLMRLEGLMGNDFTLVTALNACASLTA 520
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 108/252 (42%), Gaps = 23/252 (9%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL M+ + LD A ++F M RD SW MI G + +E I +F M +
Sbjct: 643 LLNMYTASKSLDEASRIFSRMEFRDIVSWNAMIAGKAEHGLSREAIQMFQRM------QL 696
Query: 112 LLVFPAWI-IVCVLKA--CVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
V P I V VL A +++ + V L+ G + + ++++ +G+ L
Sbjct: 697 EGVAPDKISFVTVLNAFSGSSPSSLKQARLVEKLISDQGYETDTIVGNAIVSMFGRSGRL 756
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+A F +++ + W + + + G Q F+ M +E + +S T SVL AC
Sbjct: 757 AEARRAFERIRERDAASWNVIVTAHAQHGEVEQALKLFRRMQQESSRPDSITLVSVLSAC 816
Query: 229 --GGVDDDGNCGRQMHANIVKIGLE-----SDEYVQCGLVDMYGKCRLLRDAERVFELIV 281
GG+ ++G + + +G E S E+ C +VD+ + L AE + +
Sbjct: 817 SHGGLIEEG------YHHFTSMGREFGIAGSQEHYGC-VVDLLARAGRLDQAEELLRKMP 869
Query: 282 DKKNIASWNAML 293
+ W +L
Sbjct: 870 VPASYVLWMTLL 881
>gi|3402709|gb|AAD12003.1| hypothetical protein [Arabidopsis thaliana]
Length = 563
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 87/292 (29%), Positives = 136/292 (46%), Gaps = 10/292 (3%)
Query: 43 KPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAE 102
K + N L+ +V G L AR++FDEMP R +W MI G + +E ++LF E
Sbjct: 20 KKNYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFRE 79
Query: 103 MMKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINF 161
M H L P + + V ++ +G+Q+HG K G ++ + SL +
Sbjct: 80 M------HGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHM 133
Query: 162 YGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTF 221
Y + L+D + V + N V W I+ N + G V +K M + N TF
Sbjct: 134 YMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITF 193
Query: 222 SSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIV 281
+VL +C + G G+Q+HA +KIG S V L+ MY KC L DA + F
Sbjct: 194 VTVLSSCSDLAIRGQ-GQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSERE 252
Query: 282 DKKNIASWNAMLVGYIRNGLYVEATKFLYLM-KASGIQIQESLINDLRIACS 332
D+ + W++M+ Y +G EA + M + + ++I E +L ACS
Sbjct: 253 DEDEVM-WSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACS 303
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 85/187 (45%), Gaps = 4/187 (2%)
Query: 150 RNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEM 209
+N + LIN Y + L +A VF ++ W A I + + + F+EM
Sbjct: 21 KNYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREM 80
Query: 210 GRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRL 269
+ YT SV G+ + G+Q+H +K GLE D V L MY +
Sbjct: 81 HGLGFSPDEYTLGSVFSGSAGLRSV-SIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGK 139
Query: 270 LRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLY-LMKASGIQIQESLINDLR 328
L+D E V + +N+ +WN +++G +NG E +LY +MK SG + + +
Sbjct: 140 LQDGEIVIRSM-PVRNLVAWNTLIMGNAQNGC-PETVLYLYKMMKISGCRPNKITFVTVL 197
Query: 329 IACSSIS 335
+CS ++
Sbjct: 198 SSCSDLA 204
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 112/252 (44%), Gaps = 12/252 (4%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L+ + L M++ G+L + MP+R+ +W +I+G + + L+ +MMK
Sbjct: 124 LVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLY-KMMK 182
Query: 106 RKKGHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
+ P I V VL +C G+Q+H K+G+S +++ SLI+ Y K
Sbjct: 183 -----ISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSK 237
Query: 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRE-RIKKNSYTFSS 223
CL DA FS+ + + V+W++ I G + F M + ++ N F +
Sbjct: 238 CGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLN 297
Query: 224 VLKACG--GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIV 281
+L AC G+ D G M + K G + +VD+ G+ L AE + +
Sbjct: 298 LLYACSHSGLKDKGLELFDMM--VEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMP 355
Query: 282 DKKNIASWNAML 293
K +I W +L
Sbjct: 356 IKTDIVIWKTLL 367
>gi|225428280|ref|XP_002279627.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g17210-like [Vitis vinifera]
Length = 742
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 83/275 (30%), Positives = 137/275 (49%), Gaps = 12/275 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N LL M+ ++ A +LFDEM RD SW+VMI GYV + + + LF EM
Sbjct: 189 NSLLSMYAD-NDMERAEELFDEMCERDVISWSVMIGGYVQTGEAKMALQLFLEMTSNAS- 246
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ +V VLKAC T ++ +G+ VHG++ G ++ + S+I+ Y K E
Sbjct: 247 ---IELDGITMVSVLKACANTGDISMGRSVHGVVICRGLDYDLFVGNSIIDMYSKCDDHE 303
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A F+++ NTV W + I R + + F MG+ + + T ++L++C
Sbjct: 304 SAFKAFNEMPCRNTVSWNSIISGLVRTEKHSEALSLFYSMGKAGFRADEVTLVNLLQSCK 363
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
D C + +H+ +++ G E +E+V L+D Y KC L+ A ++F+ + K + SW
Sbjct: 364 YFVDPFQC-KFIHSIVIRWGYELNEFVINSLIDAYSKCDLIELAWKLFDRLKTKDTV-SW 421
Query: 290 NAMLVGYIRNGLYVEATKFLYLM-----KASGIQI 319
+AM+ G+ G EA M K +G+ I
Sbjct: 422 SAMIAGFNHCGKPDEAIALFQEMNQAQEKPNGVTI 456
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 85/289 (29%), Positives = 138/289 (47%), Gaps = 11/289 (3%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L N ++ M+ C ++A + F+EMP R+ SW +I G V + E ++LF M
Sbjct: 286 LFVGNSIIDMYSKCDDHESAFKAFNEMPCRNTVSWNSIISGLVRTEKHSEALSLFYSM-- 343
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
G +V +L++C ++ K +H ++ + G N + SLI+ Y K
Sbjct: 344 ---GKAGFRADEVTLVNLLQSCKYFVDPFQCKFIHSIVIRWGYELNEFVINSLIDAYSKC 400
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIV--NNCREGHFHQVFNDFKEMGRERIKKNSYTFSS 223
+E A +F +LK +TV W+A I N+C G + F+EM + + K N T S
Sbjct: 401 DLIELAWKLFDRLKTKDTVSWSAMIAGFNHC--GKPDEAIALFQEMNQAQEKPNGVTILS 458
Query: 224 VLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
+L+A V D + H ++ GL ++ V ++DMY KC + + + F+ I +
Sbjct: 459 LLEAF-SVSADLKRSKWAHGIAIRRGLAAEVAVGTAILDMYAKCGEIGLSRKAFDQI-PE 516
Query: 284 KNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
KNI SW AM+ NGL +A L MK G++ + ACS
Sbjct: 517 KNIVSWGAMIAACGMNGLARDALALLSEMKLHGLKPNVVTTLSVLSACS 565
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 78/286 (27%), Positives = 133/286 (46%), Gaps = 15/286 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N +L ++ G LD+A +FD M RD SW +MI G++ + + F ++
Sbjct: 88 NSVLDFYMKTGALDSALFVFDSMRSRDSVSWNIMIHGHLSRGASDKGLWWF------RQA 141
Query: 110 HMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
++ P +V + AC ME G ++HG + + G S+ SL++ Y +
Sbjct: 142 RVIAFEPNVSTLVLAIHACRSLGAMEEGLKMHGYIIRSGFLDIPSVQNSLLSMYAD-NDM 200
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEM-GRERIKKNSYTFSSVLKA 227
E A+ +F ++ + + W+ I + G F EM I+ + T SVLKA
Sbjct: 201 ERAEELFDEMCERDVISWSVMIGGYVQTGEAKMALQLFLEMTSNASIELDGITMVSVLKA 260
Query: 228 CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK--KN 285
C D + GR +H ++ GL+ D +V ++DMY KC D E F+ + +N
Sbjct: 261 CANTGDI-SMGRSVHGVVICRGLDYDLFVGNSIIDMYSKC---DDHESAFKAFNEMPCRN 316
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
SWN+++ G +R + EA Y M +G + E + +L +C
Sbjct: 317 TVSWNSIISGLVRTEKHSEALSLFYSMGKAGFRADEVTLVNLLQSC 362
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 72/311 (23%), Positives = 131/311 (42%), Gaps = 49/311 (15%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
+N L+ + C ++ A +LFD + +D SW+ MI G+ E I LF EM + ++
Sbjct: 390 INSLIDAYSKCDLIELAWKLFDRLKTKDTVSWSAMIAGFNHCGKPDEAIALFQEMNQAQE 449
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+ I+ +L+A + +++ K HG+ + G + +++ ++++ Y K +
Sbjct: 450 KPNGVT-----ILSLLEAFSVSADLKRSKWAHGIAIRRGLAAEVAVGTAILDMYAKCGEI 504
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+ F Q+ N V W A I G EM +K N T SVL AC
Sbjct: 505 GLSRKAFDQIPEKNIVSWGAMIAACGMNGLARDALALLSEMKLHGLKPNVVTTLSVLSAC 564
Query: 229 --GGVDDDGNCGRQMHANIVKI-GLESD-EYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
GG+ ++ G N+V+ G+E E+ C +VDM + L A + E + ++
Sbjct: 565 SHGGLVEE---GLSFFENMVQDHGVEPGLEHYSC-MVDMLSRAGKLNSAMNLIEKMPERM 620
Query: 285 NIAS--WNAMLVG----------------------------------YIRNGLYVEATKF 308
+ W A+L Y +GL+ +A +
Sbjct: 621 RDGAGLWGALLSACRSSGNSRLGAGAAFRVLELEPQSSAGYFLASSMYAASGLWADAARM 680
Query: 309 LYLMKASGIQI 319
+L+KA G+++
Sbjct: 681 RWLVKARGVRV 691
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/245 (25%), Positives = 114/245 (46%), Gaps = 15/245 (6%)
Query: 92 DYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRN 151
D E + + +M KK L P ++ +LKAC ++ + GK +H L K G
Sbjct: 29 DSWEACSRYHQM---KKAGAQLTDPT-LVHSILKAC-SSLPVRHGKSIHASLLKQGFDSL 83
Query: 152 ISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGR 211
S S+++FY K L+ A FVF ++ ++V W I + G + F++
Sbjct: 84 TSTGNSVLDFYMKTGALDSALFVFDSMRSRDSVSWNIMIHGHLSRGASDKGLWWFRQARV 143
Query: 212 ERIKKNSYTFSSVLKAC---GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCR 268
+ N T + AC G +++ G +MH I++ G VQ L+ MY
Sbjct: 144 IAFEPNVSTLVLAIHACRSLGAMEE----GLKMHGYIIRSGFLDIPSVQNSLLSMYADND 199
Query: 269 LLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATK-FLYLMKASGIQIQESLINDL 327
+ R AE +F+ + + +++ SW+ M+ GY++ G A + FL + + I++ + +
Sbjct: 200 MER-AEELFDEMCE-RDVISWSVMIGGYVQTGEAKMALQLFLEMTSNASIELDGITMVSV 257
Query: 328 RIACS 332
AC+
Sbjct: 258 LKACA 262
>gi|302790389|ref|XP_002976962.1| hypothetical protein SELMODRAFT_106096 [Selaginella moellendorffii]
gi|300155440|gb|EFJ22072.1| hypothetical protein SELMODRAFT_106096 [Selaginella moellendorffii]
Length = 1108
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 85/316 (26%), Positives = 147/316 (46%), Gaps = 22/316 (6%)
Query: 13 YTCLIKECTFQKDSAG---AFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLF 69
YT L++ C D A A EL+ + ++ L N L+ M+V CG L+ A +F
Sbjct: 28 YTALLQSCVDSNDLAKGKHAHELIAN----AGLEQHLFLGNCLINMYVRCGSLEEAHAIF 83
Query: 70 DEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVC 129
+M R+ SW +I + LF M+ ++ +V +L AC
Sbjct: 84 SKMEERNVVSWTALISANAQCGAFARAFALFRTMLLESSA----APNSYTLVAMLNACAN 139
Query: 130 TMNMELGKQVHGLLFKLG---SSRNISLTG-SLINFYGKFRCLEDADFVFSQLKRHNTVV 185
+ ++ +G+ +H ++++LG +S +L G ++IN Y K LEDA VF + + V
Sbjct: 140 SRDLAIGRSIHAMIWELGLERASTTATLVGNAMINMYAKCGSLEDAIAVFLAIPEKDVVS 199
Query: 186 WTAKIVNNCREGHFHQ-VFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHAN 244
WTA +E F+ F+EM + + N TF + L AC + D G +H+
Sbjct: 200 WTAMAGAYAQERRFYPDALRIFREMLLQPLAPNVITFITALGACTSLRD----GTWLHSL 255
Query: 245 IVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK--NIASWNAMLVGYIRNGLY 302
+ + L D L++MYGKC A VF+ + ++ ++ SWNAM+ + G +
Sbjct: 256 LHEASLGFDPLASNALINMYGKCGDWEGAYSVFKAMASRQELDLVSWNAMISASVEAGRH 315
Query: 303 VEATKFLYLMKASGIQ 318
+A ++ G++
Sbjct: 316 GDAMAIFRRLRLEGMR 331
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 82/285 (28%), Positives = 134/285 (47%), Gaps = 17/285 (5%)
Query: 37 RKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL--RDFNSWAVMIVGYVDVADYQ 94
R+R ++ ++ + L+ M+ CG + A +F EMPL R +W VM+ Y +
Sbjct: 466 RRRDYVESSVATM--LVSMYGKCGSISEAELVFKEMPLPSRSLVTWNVMLGAYAQNDRSK 523
Query: 95 ECITLFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNIS 153
E EM++ V P A VL +C C+ QV + R+
Sbjct: 524 EAFGALMEMLQGG------VLPDALSFTSVLSSCYCSQE----AQVLRMCILESGYRSAC 573
Query: 154 LTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRER 213
L +LI+ +G+ R LE A VF+++ + V WTA + F +V N F+ M E
Sbjct: 574 LETALISMHGRCRELEQARSVFNEMDHGDVVSWTAMVSATAENRDFKEVHNLFRRMQLEG 633
Query: 214 IKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDA 273
+ + +T ++ L C G G+ +HA + +IGLE+D V+ L++MY C R+A
Sbjct: 634 VIPDKFTLATTLDTCLASTTLG-LGKVIHACVTEIGLEADIAVENALLNMYSNCGDWREA 692
Query: 274 ERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
FE + +++ SWN M Y + GL EA M+ G++
Sbjct: 693 LSFFE-TMKARDLVSWNIMSAAYAQAGLAKEAVLLFRQMQLEGVK 736
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/284 (27%), Positives = 130/284 (45%), Gaps = 15/284 (5%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ MH C +L+ AR +F+EM D SW M+ + D++E LF M +
Sbjct: 578 LISMHGRCRELEQARSVFNEMDHGDVVSWTAMVSATAENRDFKEVHNLFRRM------QL 631
Query: 112 LLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
V P + + L C+ + + LGK +H + ++G +I++ +L+N Y +
Sbjct: 632 EGVIPDKFTLATTLDTCLASTTLGLGKVIHACVTEIGLEADIAVENALLNMYSNCGDWRE 691
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
A F +K + V W + G + F++M E +K + TFS+ L GG
Sbjct: 692 ALSFFETMKARDLVSWNIMSAAYAQAGLAKEAVLLFRQMQLEGVKPDKLTFSTTLNVSGG 751
Query: 231 ---VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
V D G+ HA + GL+SD V GLV +Y KC L +A +F D +
Sbjct: 752 SALVSD----GKLFHALAAESGLDSDVSVATGLVKLYAKCGKLDEAMSLFRGACD-WTVV 806
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
NA++ ++G EA K + M+ G++ + + + AC
Sbjct: 807 LLNAIIGALAQHGFSEEAVKMFWKMQQEGVRPDVATLVSIISAC 850
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 70/260 (26%), Positives = 110/260 (42%), Gaps = 13/260 (5%)
Query: 38 KRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVAD-YQEC 96
+R + TL+ N ++ M+ CG L+ A +F +P +D SW M Y Y +
Sbjct: 159 ERASTTATLVG-NAMINMYAKCGSLEDAIAVFLAIPEKDVVSWTAMAGAYAQERRFYPDA 217
Query: 97 ITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTG 156
+ +F EM+ + ++ F + L AC ++ G +H LL + + +
Sbjct: 218 LRIFREMLLQPLAPNVITF-----ITALGACT---SLRDGTWLHSLLHEASLGFDPLASN 269
Query: 157 SLINFYGKFRCLEDADFVFSQLKRH---NTVVWTAKIVNNCREGHFHQVFNDFKEMGRER 213
+LIN YGK E A VF + + V W A I + G F+ + E
Sbjct: 270 ALINMYGKCGDWEGAYSVFKAMASRQELDLVSWNAMISASVEAGRHGDAMAIFRRLRLEG 329
Query: 214 IKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDA 273
++ NS T ++L A D R H I + G D + ++ MY KC A
Sbjct: 330 MRPNSVTLITILNALAASGVDFGAARGFHGRIWESGYLRDVVIGNAIISMYAKCGFFSAA 389
Query: 274 ERVFELIVDKKNIASWNAML 293
VF I K ++ SWN ML
Sbjct: 390 WAVFRRIRWKCDVISWNTML 409
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/281 (23%), Positives = 124/281 (44%), Gaps = 33/281 (11%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLR-DFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
N ++ M+ CG A +F + + D SW M+ D + + + F
Sbjct: 374 NAIISMYAKCGFFSAAWAVFRRIRWKCDVISWNTMLGASEDRKSFGKVVNTFH------- 426
Query: 109 GHMLL--VFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNI---SLTGSLINFY 162
HMLL + P + + +L AC + ++ G+++H L+ L R+ S+ L++ Y
Sbjct: 427 -HMLLAGIDPNKVSFIAILNACSNSEALDFGRKIHSLI--LTRRRDYVESSVATMLVSMY 483
Query: 163 GKFRCLEDADFVFSQ--LKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYT 220
GK + +A+ VF + L + V W + + + F EM + + ++ +
Sbjct: 484 GKCGSISEAELVFKEMPLPSRSLVTWNVMLGAYAQNDRSKEAFGALMEMLQGGVLPDALS 543
Query: 221 FSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEY----VQCGLVDMYGKCRLLRDAERV 276
F+SVL +C C ++ A ++++ + Y ++ L+ M+G+CR L A V
Sbjct: 544 FTSVLSSC-------YCSQE--AQVLRMCILESGYRSACLETALISMHGRCRELEQARSV 594
Query: 277 FELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGI 317
F + D ++ SW AM+ N + E M+ G+
Sbjct: 595 FNEM-DHGDVVSWTAMVSATAENRDFKEVHNLFRRMQLEGV 634
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 72/305 (23%), Positives = 118/305 (38%), Gaps = 39/305 (12%)
Query: 2 DNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQ 61
D L T D TCL + G ++++ + ++ + N LL M+ +CG
Sbjct: 637 DKFTLATTLD--TCL------ASTTLGLGKVIHACVTEIGLEADIAVENALLNMYSNCGD 688
Query: 62 LDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIV 121
A F+ M RD SW +M Y +E + LF +M L F + V
Sbjct: 689 WREALSFFETMKARDLVSWNIMSAAYAQAGLAKEAVLLFRQMQLEGVKPDKLTFSTTLNV 748
Query: 122 CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH 181
A V GK H L + G ++S+ L+ Y K L++A +F
Sbjct: 749 SGGSALVSD-----GKLFHALAAESGLDSDVSVATGLVKLYAKCGKLDEAMSLFRGACDW 803
Query: 182 NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQM 241
V+ A I + G + F +M +E ++ + T S++ ACG
Sbjct: 804 TVVLLNAIIGALAQHGFSEEAVKMFWKMQQEGVRPDVATLVSIISACG------------ 851
Query: 242 HANIVKIGLESD-------------EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
HA +V+ G S E+ C VD+ G+ L AE++ + + N
Sbjct: 852 HAGMVEEGCSSFLTMKEYFGISPTLEHYAC-FVDLLGRAGQLEHAEQIIRKMPFEDNTLV 910
Query: 289 WNAML 293
W ++L
Sbjct: 911 WTSLL 915
>gi|357153150|ref|XP_003576355.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Brachypodium distachyon]
Length = 617
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 79/255 (30%), Positives = 124/255 (48%), Gaps = 9/255 (3%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
++ G + AR++F+ MP RD +W V++ + + C+ M+ + V
Sbjct: 173 LYSGLGLIGDARKVFEGMPERDLVAWNVLLDCGMRSGEAGSCLQDLVLMIGGR------V 226
Query: 115 FP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADF 173
P + V+ QVH ++ K G +++ L SL+N YG+ ++ A
Sbjct: 227 QPDEFTFATVVNGLAERFAGLEAMQVHSVILKSGHLKDLFLCNSLLNVYGRCGYVDLAKK 286
Query: 174 VFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDD 233
+F + + V WTA I GH F F M NS+TF SV+ +C V+D
Sbjct: 287 LFEAMPEKDVVSWTALISGLVASGHQADAFKTFCRMQGAATVPNSFTFGSVVSSCACVND 346
Query: 234 DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
G GRQ HA ++K GLES V L+DMY KC + DA R+F+ + +++I SWNAM+
Sbjct: 347 LGG-GRQCHALVIKHGLESIPTVASSLLDMYSKCAEMDDATRMFDAM-PRRDIVSWNAMI 404
Query: 294 VGYIRNGLYVEATKF 308
G +NG A +
Sbjct: 405 CGLAQNGRSARALEL 419
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/276 (26%), Positives = 122/276 (44%), Gaps = 10/276 (3%)
Query: 43 KPTLLFLNRLLLMHV-SCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFA 101
PTL+ N LL + S G L+ A L D MP RD SW V I G + + F
Sbjct: 57 SPTLVSYNTLLSGYAASSGLLEAALHLLDAMPERDAWSWNVAISGLARAGRLTDALRRFL 116
Query: 102 EMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINF 161
EM +G + + IV +E QVH K G+ + + +
Sbjct: 117 EM---TRGPVQPDAFTYSIVSPCCCGGAGGGLESAWQVHARALKAGAFADACVGTGFVRL 173
Query: 162 YGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTF 221
Y + DA VF + + V W + R G D M R++ + +TF
Sbjct: 174 YSGLGLIGDARKVFEGMPERDLVAWNVLLDCGMRSGEAGSCLQDLVLMIGGRVQPDEFTF 233
Query: 222 SSVLKACGGVDD--DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFEL 279
++V+ G+ + G Q+H+ I+K G D ++ L+++YG+C + A+++FE
Sbjct: 234 ATVVN---GLAERFAGLEAMQVHSVILKSGHLKDLFLCNSLLNVYGRCGYVDLAKKLFEA 290
Query: 280 IVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKAS 315
+ +K++ SW A++ G + +G +A K M+ +
Sbjct: 291 M-PEKDVVSWTALISGLVASGHQADAFKTFCRMQGA 325
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 118/260 (45%), Gaps = 18/260 (6%)
Query: 47 LFL-NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
LFL N LL ++ CG +D A++LF+ MP +D SW +I G V + F M
Sbjct: 265 LFLCNSLLNVYGRCGYVDLAKKLFEAMPEKDVVSWTALISGLVASGHQADAFKTFCRMQG 324
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
V ++ V+ +C C ++ G+Q H L+ K G ++ SL++ Y K
Sbjct: 325 AAT-----VPNSFTFGSVVSSCACVNDLGGGRQCHALVIKHGLESIPTVASSLLDMYSKC 379
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKI---VNNCREGHFHQVFNDFKEMGRERIKKNSYTFS 222
++DA +F + R + V W A I N R +++++ + +E I NS T
Sbjct: 380 AEMDDATRMFDAMPRRDIVSWNAMICGLAQNGRSARALELYDEMLRLHQESITPNSVTCV 439
Query: 223 SVLKACG--GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELI 280
VL AC G + G N I + Y C LVD++ + LL +AE +
Sbjct: 440 GVLSACSHVGAVEKGCIYFTQMVNDFHIEPVPEHY-SC-LVDLFARAGLLDEAEGIISNS 497
Query: 281 VDKKNIASWNAMLVGYIRNG 300
K +A+++G + NG
Sbjct: 498 PFKH-----DAIILGTLLNG 512
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 77/181 (42%), Gaps = 2/181 (1%)
Query: 142 LLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQ 201
LL + S +S L + LE A + + + W I R G
Sbjct: 51 LLDLMPSPTLVSYNTLLSGYAASSGLLEAALHLLDAMPERDAWSWNVAISGLARAGRLTD 110
Query: 202 VFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDG-NCGRQMHANIVKIGLESDEYVQCGL 260
F EM R ++ +++T+S V C G G Q+HA +K G +D V G
Sbjct: 111 ALRRFLEMTRGPVQPDAFTYSIVSPCCCGGAGGGLESAWQVHARALKAGAFADACVGTGF 170
Query: 261 VDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQ 320
V +Y L+ DA +VFE + ++++ +WN +L +R+G + L LM +Q
Sbjct: 171 VRLYSGLGLIGDARKVFEGM-PERDLVAWNVLLDCGMRSGEAGSCLQDLVLMIGGRVQPD 229
Query: 321 E 321
E
Sbjct: 230 E 230
>gi|326495056|dbj|BAJ85624.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 673
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 85/281 (30%), Positives = 142/281 (50%), Gaps = 10/281 (3%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
+N L+ M+ G L+ AR++FD + R+ SW M+ G + +E + LF EM + +
Sbjct: 160 MNCLVDMYAKAGDLENARKVFDRILGRNVVSWTSMLSGCLQNGFAEEGLALFNEMREER- 218
Query: 109 GHMLLVFPA-WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
V P+ + + VL AC ++ G+ VHG + K G N +T ++++ Y K
Sbjct: 219 -----VLPSEYTMASVLMACTMLGSLHQGRWVHGSVIKHGMVFNPFITAAVLDMYVKCGE 273
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
+EDA +F +L + V+WT IV + G F + I NS T ++VL A
Sbjct: 274 VEDARRLFDELGFVDLVLWTTMIVGYTQNGSPLDALLLFSDKKFVHIVPNSVTIATVLSA 333
Query: 228 CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
+ + + GR +HA VK+ + ++ V LVDMY KC+ L +A +F I K++
Sbjct: 334 SAQLRNL-SLGRLIHAMSVKLLVIENDVVMNALVDMYAKCKALSEANGIFGRI-SNKDVV 391
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQE-SLINDL 327
+WN+++ GY+ N + EA M+ G S++N L
Sbjct: 392 TWNSLIAGYVENDMGNEALMLFSQMRVQGSSPDAISIVNAL 432
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 79/283 (27%), Positives = 131/283 (46%), Gaps = 11/283 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
+L M+V CG+++ AR+LFDE+ D W MIVGY + + LF++ K +
Sbjct: 264 VLDMYVKCGEVEDARRLFDELGFVDLVLWTTMIVGYTQNGSPLDALLLFSD-----KKFV 318
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+V + I VL A N+ LG+ +H + KL N + +L++ Y K + L +A
Sbjct: 319 HIVPNSVTIATVLSASAQLRNLSLGRLIHAMSVKLLVIENDVVMNALVDMYAKCKALSEA 378
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
+ +F ++ + V W + I ++ F +M + ++ + + L AC +
Sbjct: 379 NGIFGRISNKDVVTWNSLIAGYVENDMGNEALMLFSQMRVQGSSPDAISIVNALSACVCL 438
Query: 232 DD--DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
D G C H VK S+ YV L+++Y KC L A+RVF + ++N +W
Sbjct: 439 GDLLIGKC---FHTYAVKRAFLSNVYVNTALLNLYNKCADLPSAQRVFSEM-SERNSVTW 494
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
AM+ GY G + L M IQ E + + CS
Sbjct: 495 GAMIGGYGMQGDSAGSIDLLNKMLKDNIQPNEVVFTSILSTCS 537
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 76/275 (27%), Positives = 138/275 (50%), Gaps = 18/275 (6%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR-KK 108
+LL + + G L +AR++ DE P D ++ V + + + + + L M +R +
Sbjct: 59 TKLLSCYAALGDLASARRVLDETPRPDPYTYRVALGWHAAAGRHADALALHRGMRRRCPE 118
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
H +V ++ LKA V + + G+++H K G + + L++ Y K L
Sbjct: 119 AHDDVV----LLSLALKASVRSADFRYGRRLHCNAVKAGGADGFVMN-CLVDMYAKAGDL 173
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
E+A VF ++ N V WT+ + + G + F EM ER+ + YT +SVL AC
Sbjct: 174 ENARKVFDRILGRNVVSWTSMLSGCLQNGFAEEGLALFNEMREERVLPSEYTMASVLMAC 233
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELI--VDKKNI 286
+ + GR +H +++K G+ + ++ ++DMY KC + DA R+F+ + VD +
Sbjct: 234 TMLGSL-HQGRWVHGSVIKHGMVFNPFITAAVLDMYVKCGEVEDARRLFDELGFVD---L 289
Query: 287 ASWNAMLVGYIRNGLYVEA------TKFLYLMKAS 315
W M+VGY +NG ++A KF++++ S
Sbjct: 290 VLWTTMIVGYTQNGSPLDALLLFSDKKFVHIVPNS 324
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 75/304 (24%), Positives = 129/304 (42%), Gaps = 35/304 (11%)
Query: 6 LPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTA 65
+P + + T L + S G L++ + ++ + + +N L+ M+ C L A
Sbjct: 321 VPNSVTIATVLSASAQLRNLSLG--RLIHAMSVKLLVIENDVVMNALVDMYAKCKALSEA 378
Query: 66 RQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI-IVCVL 124
+F + +D +W +I GYV+ E + LF++M R +G P I IV L
Sbjct: 379 NGIFGRISNKDVVTWNSLIAGYVENDMGNEALMLFSQM--RVQGSS----PDAISIVNAL 432
Query: 125 KACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTV 184
ACVC ++ +GK H K N+ + +L+N Y K L A VFS++ N+V
Sbjct: 433 SACVCLGDLLIGKCFHTYAVKRAFLSNVYVNTALLNLYNKCADLPSAQRVFSEMSERNSV 492
Query: 185 VWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHAN 244
W A I +G + +M ++ I+ N F+S+L C H
Sbjct: 493 TWGAMIGGYGMQGDSAGSIDLLNKMLKDNIQPNEVVFTSILSTCS------------HTG 540
Query: 245 IVKIG-------------LESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
+V +G S ++ C +VD+ + L +A + + +I+ W A
Sbjct: 541 MVSVGKMCFDSMAQYFNITPSMKHYAC-MVDVLARAGNLEEALEFIQKMPMPADISIWGA 599
Query: 292 MLVG 295
L G
Sbjct: 600 FLHG 603
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 90/216 (41%), Gaps = 8/216 (3%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
+L AC ++ + +H L G R + L++ Y L A V + R +
Sbjct: 29 LLPACATLPSL---RALHARLLAHGLLRALRARTKLLSCYAALGDLASARRVLDETPRPD 85
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGR--ERIKKNSYTFSSVLKACGGVDDDGNCGRQ 240
+ + + G + M R + S LKA D GR+
Sbjct: 86 PYTYRVALGWHAAAGRHADALALHRGMRRRCPEAHDDVVLLSLALKASV-RSADFRYGRR 144
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
+H N VK G +D +V LVDMY K L +A +VF+ I+ + N+ SW +ML G ++NG
Sbjct: 145 LHCNAVKAG-GADGFVMNCLVDMYAKAGDLENARKVFDRILGR-NVVSWTSMLSGCLQNG 202
Query: 301 LYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
E M+ + E + + +AC+ + +
Sbjct: 203 FAEEGLALFNEMREERVLPSEYTMASVLMACTMLGS 238
>gi|255542118|ref|XP_002512123.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549303|gb|EEF50792.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 456
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 86/287 (29%), Positives = 134/287 (46%), Gaps = 11/287 (3%)
Query: 48 FLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRK 107
+ LL M+V CG + AR +FDE+ D SW MIVGY + + LF + K+
Sbjct: 141 LMTALLDMYVKCGVIRDARSVFDELSSIDLVSWTAMIVGYTQSNLSYDALKLFLD--KKW 198
Query: 108 KGHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166
G + P + IV L AC N+ LG+ +HGL KLG + +L +L++ Y K
Sbjct: 199 AG----ILPNDVTIVSALAACARMGNLNLGRSIHGLAIKLGFAEP-TLMNALVHMYAKCH 253
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
DA ++F + V W + I + G ++ + F+ M +E + ++ T SV
Sbjct: 254 MNRDASYLFETASEKDVVSWNSIISGCSQMGSPYEALDLFQRMRKESVSPDAVTLVSVFS 313
Query: 227 ACGGVDDDGNCGRQMHANIVKIGL-ESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
AC + G +HA VK GL S+ YV L+ Y KC A +F+ + +KN
Sbjct: 314 ACASLGAL-QVGSSLHAYSVKEGLLSSNVYVSTALLTFYAKCGDAGSARTIFDGM-QEKN 371
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+W+AM+ GY G + M ++ E + + ACS
Sbjct: 372 TVTWSAMIGGYGVQGDAGGSLSIFNDMLRQELKPNEVIFTTILSACS 418
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 86/298 (28%), Positives = 135/298 (45%), Gaps = 8/298 (2%)
Query: 43 KPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAE 102
P L L + CG+++ +R FDE R+ SW MIVGYV E + LF
Sbjct: 35 PPDSFVLTGLTDFYAKCGEIECSRCAFDENLDRNVVSWTSMIVGYVQNDCPVEGLILFNR 94
Query: 103 MMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFY 162
M ++G L+ + + ++ AC + GK HG K G N L +L++ Y
Sbjct: 95 M---REG--LIEGNQFTLGILVTACTKLGALHQGKCFHGYAIKSGVQLNSYLMTALLDMY 149
Query: 163 GKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFS 222
K + DA VF +L + V WTA IV + + F + I N T
Sbjct: 150 VKCGVIRDARSVFDELSSIDLVSWTAMIVGYTQSNLSYDALKLFLDKKWAGILPNDVTIV 209
Query: 223 SVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282
S L AC + + N GR +H +K+G ++ + LV MY KC + RDA +FE
Sbjct: 210 SALAACARMGNL-NLGRSIHGLAIKLGF-AEPTLMNALVHMYAKCHMNRDASYLFE-TAS 266
Query: 283 KKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKIN 340
+K++ SWN+++ G + G EA M+ + + + AC+S+ A ++
Sbjct: 267 EKDVVSWNSIISGCSQMGSPYEALDLFQRMRKESVSPDAVTLVSVFSACASLGALQVG 324
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 108/216 (50%), Gaps = 17/216 (7%)
Query: 124 LKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNT 183
++AC +++ G+++H + K G + LTG L +FY K +E + F + N
Sbjct: 11 IRACSELRDIDEGRKLHCQIIKAGPPDSFVLTG-LTDFYAKCGEIECSRCAFDENLDRNV 69
Query: 184 VVWTAKIV----NNCR-EGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG--GVDDDGN 236
V WT+ IV N+C EG +FN +E I+ N +T ++ AC G G
Sbjct: 70 VSWTSMIVGYVQNDCPVEGLI--LFNRMRE---GLIEGNQFTLGILVTACTKLGALHQGK 124
Query: 237 CGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGY 296
C H +K G++ + Y+ L+DMY KC ++RDA VF+ + ++ SW AM+VGY
Sbjct: 125 C---FHGYAIKSGVQLNSYLMTALLDMYVKCGVIRDARSVFDEL-SSIDLVSWTAMIVGY 180
Query: 297 IRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
++ L +A K K +GI + I AC+
Sbjct: 181 TQSNLSYDALKLFLDKKWAGILPNDVTIVSALAACA 216
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 86/188 (45%), Gaps = 10/188 (5%)
Query: 43 KPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAE 102
+PTL+ N L+ M+ C A LF+ +D SW +I G + E + LF
Sbjct: 238 EPTLM--NALVHMYAKCHMNRDASYLFETASEKDVVSWNSIISGCSQMGSPYEALDLFQR 295
Query: 103 MMKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGS-SRNISLTGSLIN 160
M K V P A +V V AC +++G +H K G S N+ ++ +L+
Sbjct: 296 MRKES------VSPDAVTLVSVFSACASLGALQVGSSLHAYSVKEGLLSSNVYVSTALLT 349
Query: 161 FYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYT 220
FY K A +F ++ NTV W+A I +G + F +M R+ +K N
Sbjct: 350 FYAKCGDAGSARTIFDGMQEKNTVTWSAMIGGYGVQGDAGGSLSIFNDMLRQELKPNEVI 409
Query: 221 FSSVLKAC 228
F+++L AC
Sbjct: 410 FTTILSAC 417
>gi|222629201|gb|EEE61333.1| hypothetical protein OsJ_15451 [Oryza sativa Japonica Group]
Length = 1037
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 82/285 (28%), Positives = 140/285 (49%), Gaps = 8/285 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+ L+ ++ G ++++R++F ++ +I G+V + E I LF +++K
Sbjct: 576 SSLIDLYSKHGDVESSRKIFAQVDASSIVPINALIAGFVQNNNEDEAIQLFQQVLKDGLK 635
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTG-SLINFYGKFRCL 168
+ F + +L C ++N +GKQVH K G + +L G SL Y K + L
Sbjct: 636 PSSVTFSS-----ILSGCSGSLNSAIGKQVHCYTLKSGVLYDDTLLGVSLAGIYLKSKML 690
Query: 169 EDADFVFSQLKRH-NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
EDA+ + +++ H N WTA I + G+ F M ++ + TF+SVLKA
Sbjct: 691 EDANKLLTEMPDHKNLFEWTAIISGYAQNGYGDHSLVSFWRMRHCNVRSDEATFASVLKA 750
Query: 228 CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
C V + G+++H I K G S E L+DMY KC + + F+ + +K++I
Sbjct: 751 CSDVTAFAD-GKEIHGLITKSGFGSYETATSALIDMYSKCGDVISSFEAFKELKNKQDIM 809
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
WN+M+VG+ +NG EA M+ I+ E + IAC+
Sbjct: 810 PWNSMIVGFAKNGYADEALLLFQKMEELQIKPDEVTFLGVLIACT 854
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 80/294 (27%), Positives = 140/294 (47%), Gaps = 9/294 (3%)
Query: 45 TLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMM 104
+L N L M+ G + A+ LF +P +D SW + VG + +E + M+
Sbjct: 470 SLFVANATLDMYSKYGAIGDAKALFSLIPYKDSISWNALTVGLAQNLEEEEAVC----ML 525
Query: 105 KRKKGHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYG 163
KR + H + P + + AC E GKQ+H L K G N ++ SLI+ Y
Sbjct: 526 KRMRLHG--ITPDDVSFSTAINACSNIRATETGKQIHCLAIKYGICSNHAVGSSLIDLYS 583
Query: 164 KFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSS 223
K +E + +F+Q+ + V A I + + + F+++ ++ +K +S TFSS
Sbjct: 584 KHGDVESSRKIFAQVDASSIVPINALIAGFVQNNNEDEAIQLFQQVLKDGLKPSSVTFSS 643
Query: 224 VLKACGGVDDDGNCGRQMHANIVKIG-LESDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282
+L C G + G+Q+H +K G L D + L +Y K ++L DA ++ + D
Sbjct: 644 ILSGCSGSLNSA-IGKQVHCYTLKSGVLYDDTLLGVSLAGIYLKSKMLEDANKLLTEMPD 702
Query: 283 KKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
KN+ W A++ GY +NG + + M+ ++ E+ + ACS ++A
Sbjct: 703 HKNLFEWTAIISGYAQNGYGDHSLVSFWRMRHCNVRSDEATFASVLKACSDVTA 756
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 79/286 (27%), Positives = 130/286 (45%), Gaps = 44/286 (15%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ CG + AR++FD + D W+ MI Y V YQE + LF+ M
Sbjct: 209 LVDMYAKCGDVPNARRVFDGIACPDTICWSSMIACYHRVGCYQEALALFSRMD------- 261
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
K+GS+ + ++I+ L+ A
Sbjct: 262 ---------------------------------KMGSAPDQVTLVTIISTLASSGRLDHA 288
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
+ ++ +TV W A I + + G V +K+M + TF+S+L A +
Sbjct: 289 TALLKKMPTPSTVAWNAVISGHAQSGLEFNVLGLYKDMRSWGLWPTRSTFASMLSAAANM 348
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
G+QMHA V GL+++ +V L+++Y KC DA+ VF+L + KNI WNA
Sbjct: 349 KAFVE-GQQMHAAAVMHGLDANVFVGSSLINLYAKCGCPSDAKNVFDLSCE-KNIVMWNA 406
Query: 292 MLVGYIRNGLYVEATK-FLYLMKASGIQIQESLINDLRIACSSISA 336
ML G+++N L EA + F Y+M+ + +Q E + AC+ +S+
Sbjct: 407 MLTGFVQNELPEEAIRMFQYMMRYT-LQTDEFTFVSILGACTYLSS 451
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 91/341 (26%), Positives = 149/341 (43%), Gaps = 17/341 (4%)
Query: 2 DNLCLPIT---TDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVS 58
D + P T + M C + +Q+ A L + + K + P + L ++ S
Sbjct: 227 DGIACPDTICWSSMIACYHRVGCYQE----ALALFSRMDK-MGSAPDQVTLVTIISTLAS 281
Query: 59 CGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAW 118
G+LD A L +MP +W +I G+ + L+ +M R G ++P
Sbjct: 282 SGRLDHATALLKKMPTPSTVAWNAVISGHAQSGLEFNVLGLYKDM--RSWG----LWPTR 335
Query: 119 IIVCVLKACVCTMNMEL-GKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQ 177
+ + M + G+Q+H G N+ + SLIN Y K C DA VF
Sbjct: 336 STFASMLSAAANMKAFVEGQQMHAAAVMHGLDANVFVGSSLINLYAKCGCPSDAKNVFDL 395
Query: 178 LKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC 237
N V+W A + + + F+ M R ++ + +TF S+L AC +
Sbjct: 396 SCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYTLQTDEFTFVSILGACTYLSSF-YL 454
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYI 297
G+Q+H +K ++ +V +DMY K + DA+ +F LI K +I SWNA+ VG
Sbjct: 455 GKQVHCVTIKNCMDISLFVANATLDMYSKYGAIGDAKALFSLIPYKDSI-SWNALTVGLA 513
Query: 298 RNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASK 338
+N EA L M+ GI + + ACS+I A++
Sbjct: 514 QNLEEEEAVCMLKRMRLHGITPDDVSFSTAINACSNIRATE 554
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 69/291 (23%), Positives = 129/291 (44%), Gaps = 7/291 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+ L+ ++ CG A+ +FD ++ W M+ G+V +E I +F MM+
Sbjct: 374 SSLINLYAKCGCPSDAKNVFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMR---- 429
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
L + V +L AC + LGKQVH + K ++ + + ++ Y K+ +
Sbjct: 430 -YTLQTDEFTFVSILGACTYLSSFYLGKQVHCVTIKNCMDISLFVANATLDMYSKYGAIG 488
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
DA +FS + +++ W A V + + K M I + +FS+ + AC
Sbjct: 489 DAKALFSLIPYKDSISWNALTVGLAQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINACS 548
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ G+Q+H +K G+ S+ V L+D+Y K + + ++F VD +I
Sbjct: 549 NIRAT-ETGKQIHCLAIKYGICSNHAVGSSLIDLYSKHGDVESSRKIFAQ-VDASSIVPI 606
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKIN 340
NA++ G+++N EA + + G++ + + CS S I
Sbjct: 607 NALIAGFVQNNNEDEAIQLFQQVLKDGLKPSSVTFSSILSGCSGSLNSAIG 657
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 79/185 (42%), Gaps = 11/185 (5%)
Query: 137 KQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCRE 196
+ +HG + + GS L SL+ Y K + A + ++ + + R
Sbjct: 86 RALHGRILRGGSPLLGRLGDSLVELYCKSGRVGYAWSALGYAGERASGAASSLLSCHARS 145
Query: 197 GHFHQVFNDFKEM-----GRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLE 251
G V F+ + GR + + + VL AC V GRQ+H ++VK G
Sbjct: 146 GSPGDVLGAFRYIRCTAGGR----PDQFGLAVVLSACSRVGVLAY-GRQVHCDVVKSGFS 200
Query: 252 SDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYL 311
S + + LVDMY KC + +A RVF+ I I W++M+ Y R G Y EA
Sbjct: 201 SSVFCEAALVDMYAKCGDVPNARRVFDGIACPDTIC-WSSMIACYHRVGCYQEALALFSR 259
Query: 312 MKASG 316
M G
Sbjct: 260 MDKMG 264
Score = 41.6 bits (96), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 3/116 (2%)
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
+ VL AC + G+QVH + K G S ++ +L++ Y K + +A VF +
Sbjct: 171 LAVVLSACSRVGVLAYGRQVHCDVVKSGFSSSVFCEAALVDMYAKCGDVPNARRVFDGIA 230
Query: 180 RHNTVVWTAKIVNNCREGHFHQ---VFNDFKEMGRERIKKNSYTFSSVLKACGGVD 232
+T+ W++ I R G + + +F+ +MG + T S L + G +D
Sbjct: 231 CPDTICWSSMIACYHRVGCYQEALALFSRMDKMGSAPDQVTLVTIISTLASSGRLD 286
>gi|302793632|ref|XP_002978581.1| hypothetical protein SELMODRAFT_109016 [Selaginella moellendorffii]
gi|300153930|gb|EFJ20567.1| hypothetical protein SELMODRAFT_109016 [Selaginella moellendorffii]
Length = 785
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 79/285 (27%), Positives = 140/285 (49%), Gaps = 8/285 (2%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ C L+ R LF++MP R+ SW VM+ Y ++ + + E M+
Sbjct: 303 LVAMYSKCESLEDTRWLFEKMPQRNVISWNVMVTAYAKHGLGRKAVQI-TEYMQLDG--- 358
Query: 112 LLVFPAWII-VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
V P + V +L C + +++LG++VHG + + ++ L SL+N YG+ +E
Sbjct: 359 --VKPDNVTCVGLLNVCTGSADLKLGRKVHGWIAEGRCEADLILWNSLLNMYGRCGEVEQ 416
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
A+ VF + + N + WTA + R+ F + +K TF L AC G
Sbjct: 417 AEMVFDGILQRNVISWTAMLTAYSRQNRQDMALLLFHAIHLSGVKPTCITFLEALDACVG 476
Query: 231 VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWN 290
+ GR +H+ V+ G + D + LV MYG+C +RDA+ F+ +KN +W+
Sbjct: 477 AEALDK-GRLVHSCAVQSGNDIDVSLGSALVAMYGRCGSIRDAKACFDDTEVRKNHVTWS 535
Query: 291 AMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
AM+ ++++G E + L M+ G+ + + ACS+++
Sbjct: 536 AMIAAFVQHGQDREGLQHLRFMQQQGLDMSPATFASTLSACSNLA 580
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 77/278 (27%), Positives = 135/278 (48%), Gaps = 8/278 (2%)
Query: 41 NIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLF 100
+KP + L L M+ SCG +D A+++FD MP R+ +W MI G V ++ +F
Sbjct: 91 GVKPDNITLLAALTMYGSCGSVDDAKRVFDAMPARNVITWTAMI-GAHAVTSLEQAFKVF 149
Query: 101 AEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLIN 160
M + + V +++AC +E+G +H + S+ L +LI
Sbjct: 150 RLMELEGFKSNFVTY-----VTLVQACSKPEFLEVGIILHMRSVESSSAMETPLCNALIT 204
Query: 161 FYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYT 220
YG+ LEDA +FS + + + W A I + GH + ++ M +E K + T
Sbjct: 205 MYGRCGRLEDARAIFSSMVERDIIAWNALITEYGQHGHVEEAVLLYQLMLQEGCKPDKVT 264
Query: 221 FSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELI 280
F ++L G + + +H++IV+ G+ + + LV MY KC L D +FE +
Sbjct: 265 FVALLTMSNGPEALTEV-KLVHSHIVESGVSINIALGTALVAMYSKCESLEDTRWLFEKM 323
Query: 281 VDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
++N+ SWN M+ Y ++GL +A + M+ G++
Sbjct: 324 -PQRNVISWNVMVTAYAKHGLGRKAVQITEYMQLDGVK 360
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 127/269 (47%), Gaps = 7/269 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ CG+L+ AR +F M RD +W +I Y +E + L+ M++
Sbjct: 200 NALITMYGRCGRLEDARAIFSSMVERDIIAWNALITEYGQHGHVEEAVLLYQLMLQEGCK 259
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ F A + + + + K VH + + G S NI+L +L+ Y K LE
Sbjct: 260 PDKVTFVALLTMSNGPEALTEV-----KLVHSHIVESGVSINIALGTALVAMYSKCESLE 314
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
D ++F ++ + N + W + + G + + M + +K ++ T +L C
Sbjct: 315 DTRWLFEKMPQRNVISWNVMVTAYAKHGLGRKAVQITEYMQLDGVKPDNVTCVGLLNVCT 374
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
G D GR++H I + E+D + L++MYG+C + AE VF+ I+ ++N+ SW
Sbjct: 375 G-SADLKLGRKVHGWIAEGRCEADLILWNSLLNMYGRCGEVEQAEMVFDGIL-QRNVISW 432
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
AML Y R A + + SG++
Sbjct: 433 TAMLTAYSRQNRQDMALLLFHAIHLSGVK 461
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 75/275 (27%), Positives = 130/275 (47%), Gaps = 11/275 (4%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L+ N LL M+ CG+++ A +FD + R+ SW M+ Y + LF +
Sbjct: 398 LILWNSLLNMYGRCGEVEQAEMVFDGILQRNVISWTAMLTAYSRQNRQDMALLLFHAI-- 455
Query: 106 RKKGHMLLVFPAWIIVC-VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
H+ V P I L ACV ++ G+ VH + G+ ++SL +L+ YG+
Sbjct: 456 ----HLSGVKPTCITFLEALDACVGAEALDKGRLVHSCAVQSGNDIDVSLGSALVAMYGR 511
Query: 165 FRCLEDADFVFSQLK-RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSS 223
+ DA F + R N V W+A I + G + + M ++ + + TF+S
Sbjct: 512 CGSIRDAKACFDDTEVRKNHVTWSAMIAAFVQHGQDREGLQHLRFMQQQGLDMSPATFAS 571
Query: 224 VLKACGGVDDDGNCGRQMHANIVKIGLESD-EYVQCGLVDMYGKCRLLRDAERVFELIVD 282
L AC + D G+++H+ + + +++ V LV MYGKC L A VFE
Sbjct: 572 TLSACSNLADLRE-GKRIHSYVRERRFDTEAATVTNSLVTMYGKCGSLDCAREVFE-TSR 629
Query: 283 KKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGI 317
+++ WNA++ GY ++ +A + + M+ G+
Sbjct: 630 RQDTICWNAIISGYAQHSQTRDAVELFHRMQQEGV 664
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 61/246 (24%), Positives = 115/246 (46%), Gaps = 12/246 (4%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLR-DFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGH 110
L+ M+ CG + A+ FD+ +R + +W+ MI +V +E + M ++
Sbjct: 505 LVAMYGRCGSIRDAKACFDDTEVRKNHVTWSAMIAAFVQHGQDREGLQHLRFMQQQG--- 561
Query: 111 MLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLG-SSRNISLTGSLINFYGKFRCLE 169
L + PA L AC ++ GK++H + + + ++T SL+ YGK L+
Sbjct: 562 -LDMSPA-TFASTLSACSNLADLREGKRIHSYVRERRFDTEAATVTNSLVTMYGKCGSLD 619
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC- 228
A VF +R +T+ W A I + F M +E + + TF +L C
Sbjct: 620 CAREVFETSRRQDTICWNAIISGYAQHSQTRDAVELFHRMQQEGVAPDPVTFVCILSVCS 679
Query: 229 -GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
GG+ D+G +A++V++GLE + ++D+ G+ L++AE + + + I
Sbjct: 680 HGGLLDEGVYA---YASMVELGLEPTQDNYACVIDLLGRAGKLQEAEEFIQSLGTRPAIE 736
Query: 288 SWNAML 293
+ ++L
Sbjct: 737 TLTSLL 742
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 86/211 (40%), Gaps = 40/211 (18%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
+L+AC +++ +++H + + + L LI+ YGK L+DA F ++ N
Sbjct: 1 LLQACPKVKALDVARRLHSQIVRASLDNRVFLGNHLIHTYGKCHSLDDAWETFERMSYKN 60
Query: 183 TVVWTAKIVNNCREGHFHQV-FNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQM 241
WTA I+ C + H H + ++M E +K ++ T + L
Sbjct: 61 VYTWTA-IIGVCAQHHCHSLAIILLRQMLLEGVKPDNITLLAALT--------------- 104
Query: 242 HANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGL 301
MYG C + DA+RVF+ + +N+ +W AM+ + L
Sbjct: 105 ---------------------MYGSCGSVDDAKRVFDAM-PARNVITWTAMIGAHAVTSL 142
Query: 302 YVEATKFLYLMKASGIQIQESLINDLRIACS 332
+A K LM+ G + L ACS
Sbjct: 143 E-QAFKVFRLMELEGFKSNFVTYVTLVQACS 172
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/195 (19%), Positives = 79/195 (40%), Gaps = 5/195 (2%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCG 60
M L ++ + + C+ D + +++R+R N L+ M+ CG
Sbjct: 557 MQQQGLDMSPATFASTLSACSNLADLREGKRIHSYVRERRFDTEAATVTNSLVTMYGKCG 616
Query: 61 QLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWII 120
LD AR++F+ +D W +I GY + ++ + LF M + + F
Sbjct: 617 SLDCAREVFETSRRQDTICWNAIISGYAQHSQTRDAVELFHRMQQEGVAPDPVTF----- 671
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
VC+L C ++ G + + +LG +I+ G+ L++A+ L
Sbjct: 672 VCILSVCSHGGLLDEGVYAYASMVELGLEPTQDNYACVIDLLGRAGKLQEAEEFIQSLGT 731
Query: 181 HNTVVWTAKIVNNCR 195
+ ++++C+
Sbjct: 732 RPAIETLTSLLSSCK 746
>gi|297804786|ref|XP_002870277.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
lyrata]
gi|297316113|gb|EFH46536.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
lyrata]
Length = 684
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 81/304 (26%), Positives = 135/304 (44%), Gaps = 13/304 (4%)
Query: 36 IRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQE 95
I K ++ P N L+ M+ ++AR + P R+ SW ++ G +
Sbjct: 32 IVKTLDSPPPPFLANYLINMYSKLDHPESARLVLRLTPARNVVSWTSLVSGLAQNGHFST 91
Query: 96 CITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLT 155
+ F EM + FP CV KA GKQ+H L K G ++ +
Sbjct: 92 ALFEFFEMRREGVAPNDFTFP-----CVFKAVASLRLPVTGKQIHALAVKCGRILDVFVG 146
Query: 156 GSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIK 215
S + Y K R +DA +F ++ N W A I N+ +G + F E R +
Sbjct: 147 CSAFDMYCKTRLRDDARKLFDEIPERNLETWNAYISNSVTDGRPKEAIEAFIEFRRIGGQ 206
Query: 216 KNSYTFSSVLKACGGVDDDG---NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRD 272
NS TF L AC DG + G QMH + + G ++D V GL+D YGKC+ +R
Sbjct: 207 PNSITFCGFLNAC----SDGLLLDLGMQMHGLVFRSGFDTDVSVYNGLIDFYGKCKQIRS 262
Query: 273 AERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+E +F + KN SW +++ Y++N +A+ + ++ + +I+ + AC+
Sbjct: 263 SEIIFAEM-GMKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKEIVETSDFMISSVLSACA 321
Query: 333 SISA 336
++
Sbjct: 322 GMAG 325
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 97/211 (45%), Gaps = 3/211 (1%)
Query: 123 VLKACVCTMNMELGKQVHGLLFK-LGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH 181
+LK + T +M LG+ VH + K L S L LIN Y K E A V
Sbjct: 12 LLKNAISTSSMRLGRVVHARIVKTLDSPPPPFLANYLINMYSKLDHPESARLVLRLTPAR 71
Query: 182 NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQM 241
N V WT+ + + GHF +F EM RE + N +TF V KA + G+Q+
Sbjct: 72 NVVSWTSLVSGLAQNGHFSTALFEFFEMRREGVAPNDFTFPCVFKAVASLRLPVT-GKQI 130
Query: 242 HANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGL 301
HA VK G D +V C DMY K RL DA ++F+ I + +N+ +WNA + + +G
Sbjct: 131 HALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPE-RNLETWNAYISNSVTDGR 189
Query: 302 YVEATKFLYLMKASGIQIQESLINDLRIACS 332
EA + + G Q ACS
Sbjct: 190 PKEAIEAFIEFRRIGGQPNSITFCGFLNACS 220
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 112/246 (45%), Gaps = 9/246 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ + C Q+ ++ +F EM +++ SW ++ YV + ++ L+ + RK+
Sbjct: 248 NGLIDFYGKCKQIRSSEIIFAEMGMKNAVSWCSLVAAYVQNHEDEKASVLY--LRSRKE- 304
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
++ ++I VL AC +ELG+ +H K RNI + +L++ YGK C+E
Sbjct: 305 --IVETSDFMISSVLSACAGMAGLELGRSIHAHAVKACVERNIFVGSALVDMYGKCGCIE 362
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRE--RIKKNSYTFSSVLKA 227
D++ F ++ N V + I +G F++M N TF S+L A
Sbjct: 363 DSEQAFDEMPEKNLVTLNSLIGGYAHQGQVDMALALFEDMAPRGCGPAPNYMTFVSLLSA 422
Query: 228 CGGVDDDGNCGRQMHANIVKIGLESD-EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
C N + + G+E E+ C +VDM G+ ++ A + + K I
Sbjct: 423 CSRAGAVENGMKIFDSMKSTYGIEPGAEHYSC-IVDMLGRAGMVEQAFEFIKKMPIKPTI 481
Query: 287 ASWNAM 292
+ W A+
Sbjct: 482 SVWGAL 487
>gi|15226463|ref|NP_179705.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206523|sp|Q9SKQ4.1|PP167_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g21090
gi|4803934|gb|AAD29807.1| unknown protein [Arabidopsis thaliana]
gi|330252028|gb|AEC07122.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 597
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 86/314 (27%), Positives = 144/314 (45%), Gaps = 37/314 (11%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N ++ +V G L AR +FD MP RD SW M++GY + E + + E R+ G
Sbjct: 117 NNMVSGYVKSGMLVRARVVFDSMPERDVVSWNTMVIGYAQDGNLHEALWFYKEF--RRSG 174
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK----- 164
+ F + +L ACV + ++L +Q HG + G N+ L+ S+I+ Y K
Sbjct: 175 ---IKFNEFSFAGLLTACVKSRQLQLNRQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQME 231
Query: 165 --FRC------------------------LEDADFVFSQLKRHNTVVWTAKIVNNCREGH 198
RC +E A+ +F ++ N V WTA I R+G
Sbjct: 232 SAKRCFDEMTVKDIHIWTTLISGYAKLGDMEAAEKLFCEMPEKNPVSWTALIAGYVRQGS 291
Query: 199 FHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQC 258
++ + F++M +K +TFSS L A + + G+++H +++ + + V
Sbjct: 292 GNRALDLFRKMIALGVKPEQFTFSSCLCASASIASLRH-GKEIHGYMIRTNVRPNAIVIS 350
Query: 259 GLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
L+DMY K L +ERVF + DK + WN M+ ++GL +A + L M +Q
Sbjct: 351 SLIDMYSKSGSLEASERVFRICDDKHDCVFWNTMISALAQHGLGHKALRMLDDMIKFRVQ 410
Query: 319 IQESLINDLRIACS 332
+ + + ACS
Sbjct: 411 PNRTTLVVILNACS 424
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/267 (24%), Positives = 119/267 (44%), Gaps = 31/267 (11%)
Query: 56 HVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK------- 108
+ CGQ+++A++ FDEM ++D + W +I GY + D + LF EM ++
Sbjct: 224 YAKCGQMESAKRCFDEMTVKDIHIWTTLISGYAKLGDMEAAEKLFCEMPEKNPVSWTALI 283
Query: 109 ---------GHMLLVFPAWIIVCV------LKACVCT----MNMELGKQVHGLLFKLGSS 149
L +F I + V +C+C ++ GK++HG + +
Sbjct: 284 AGYVRQGSGNRALDLFRKMIALGVKPEQFTFSSCLCASASIASLRHGKEIHGYMIRTNVR 343
Query: 150 RNISLTGSLINFYGKFRCLEDADFVFSQL-KRHNTVVWTAKIVNNCREGHFHQVFNDFKE 208
N + SLI+ Y K LE ++ VF +H+ V W I + G H+ +
Sbjct: 344 PNAIVISSLIDMYSKSGSLEASERVFRICDDKHDCVFWNTMISALAQHGLGHKALRMLDD 403
Query: 209 MGRERIKKNSYTFSSVLKAC--GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGK 266
M + R++ N T +L AC G+ ++G R + V+ G+ D+ L+D+ G+
Sbjct: 404 MIKFRVQPNRTTLVVILNACSHSGLVEEGL--RWFESMTVQHGIVPDQEHYACLIDLLGR 461
Query: 267 CRLLRDAERVFELIVDKKNIASWNAML 293
++ R E + + + WNA+L
Sbjct: 462 AGCFKELMRKIEEMPFEPDKHIWNAIL 488
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 99/237 (41%), Gaps = 32/237 (13%)
Query: 131 MNMELGKQVHGL-LFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAK 189
M M+ GK + +F RN+ ++++ Y K L A VF + + V W
Sbjct: 91 MYMKCGKPIDACKVFDQMHLRNLYSWNNMVSGYVKSGMLVRARVVFDSMPERDVVSWNTM 150
Query: 190 IVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIG 249
++ ++G+ H+ +KE R IK N ++F+ +L AC RQ H ++ G
Sbjct: 151 VIGYAQDGNLHEALWFYKEFRRSGIKFNEFSFAGLLTACVK-SRQLQLNRQAHGQVLVAG 209
Query: 250 LESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK-------------------------- 283
S+ + C ++D Y KC + A+R F+ + K
Sbjct: 210 FLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKDIHIWTTLISGYAKLGDMEAAEKLFC 269
Query: 284 ----KNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
KN SW A++ GY+R G A M A G++ ++ + A +SI++
Sbjct: 270 EMPEKNPVSWTALIAGYVRQGSGNRALDLFRKMIALGVKPEQFTFSSCLCASASIAS 326
>gi|297822535|ref|XP_002879150.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297324989|gb|EFH55409.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 872
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 83/280 (29%), Positives = 136/280 (48%), Gaps = 11/280 (3%)
Query: 57 VSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP 116
S +L A LFD+ P RD S+ ++ G+ QE LF + H+ +
Sbjct: 42 ASSSRLYYAHNLFDKSPDRDRESYTSLLFGFSRDGRTQEATRLFLNIQ-----HLGMEMD 96
Query: 117 AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFS 176
I VLK + G+Q+H K G ++S+ SL++ Y K +D VF
Sbjct: 97 CSIFSSVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFD 156
Query: 177 QLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGN 236
++K N V WT I R +V F M E + NS+TF++ L G + ++G
Sbjct: 157 EMKERNVVTWTTLISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAAL---GVLAEEGV 213
Query: 237 CGR--QMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLV 294
GR Q+H +VK GL+ V L+++Y KC +R A +F+ + K++ +WN+M+
Sbjct: 214 GGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDK-TEVKSVVTWNSMIS 272
Query: 295 GYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
GY NGL +EA Y M+ + +++ ES + C+++
Sbjct: 273 GYAANGLDLEALGMFYSMRLNHVRLSESSFASIIKLCANL 312
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 75/282 (26%), Positives = 132/282 (46%), Gaps = 11/282 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMP-LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGH 110
L++ + C + A +LF E L + SW MI G++ +E + LF+EM ++KG
Sbjct: 340 LMVAYSKCMAMLDALRLFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEM--KRKGV 397
Query: 111 MLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
F +I+ L + +VH + K R+ ++ +L++ Y K +++
Sbjct: 398 RPNEFTYSVILTALPVISPS-------EVHAQVVKTNYERSSTVGTALLDAYVKLGKVDE 450
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
A VFS + + V W+A + + G F E+ + +K N +TFSS+L C
Sbjct: 451 AAKVFSGIDNKDIVAWSAMLAGYAQAGETEAAIKIFSELTKGGVKPNEFTFSSILNVCAA 510
Query: 231 VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWN 290
G+Q H +K L+S V L+ MY K + AE VF+ +K++ SWN
Sbjct: 511 TTASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGHIESAEEVFKR-QREKDLVSWN 569
Query: 291 AMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+M+ GY ++G ++A MK +++ + AC+
Sbjct: 570 SMISGYAQHGQAMKALDVFKEMKKRKVKMDSVTFIGVFAACT 611
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/276 (26%), Positives = 126/276 (45%), Gaps = 6/276 (2%)
Query: 65 ARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVL 124
R +FDEM R+ +W +I GY + +E +TLF M F A + V
Sbjct: 151 GRNVFDEMKERNVVTWTTLISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAE 210
Query: 125 KACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTV 184
+ G QVH ++ K G + I ++ SLIN Y K + A +F + + + V
Sbjct: 211 EGVGGR-----GLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVV 265
Query: 185 VWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHAN 244
W + I G + F M ++ + +F+S++K C + + Q+H +
Sbjct: 266 TWNSMISGYAANGLDLEALGMFYSMRLNHVRLSESSFASIIKLCANLKEL-RFTEQLHCS 324
Query: 245 IVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVE 304
+VK G D+ ++ L+ Y KC + DA R+F+ N+ SW AM+ G+++N E
Sbjct: 325 VVKYGFVFDQNIRTALMVAYSKCMAMLDALRLFKETGFLGNVVSWTAMISGFLQNDGKEE 384
Query: 305 ATKFLYLMKASGIQIQESLINDLRIACSSISASKIN 340
A MK G++ E + + A IS S+++
Sbjct: 385 AVGLFSEMKRKGVRPNEFTYSVILTALPVISPSEVH 420
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 78/294 (26%), Positives = 136/294 (46%), Gaps = 12/294 (4%)
Query: 45 TLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMM 104
T+ N L+ +++ CG + AR LFD+ ++ +W MI GY E + +F M
Sbjct: 232 TIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSM- 290
Query: 105 KRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
+ H+ L ++ ++K C + +Q+H + K G + ++ +L+ Y K
Sbjct: 291 --RLNHVRLSESSF--ASIIKLCANLKELRFTEQLHCSVVKYGFVFDQNIRTALMVAYSK 346
Query: 165 FRCLEDADFVFSQLK-RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSS 223
+ DA +F + N V WTA I + + F EM R+ ++ N +T+S
Sbjct: 347 CMAMLDALRLFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVRPNEFTYSV 406
Query: 224 VLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
+L A + ++HA +VK E V L+D Y K + +A +VF I D
Sbjct: 407 ILTALPVISPS-----EVHAQVVKTNYERSSTVGTALLDAYVKLGKVDEAAKVFSGI-DN 460
Query: 284 KNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISAS 337
K+I +W+AML GY + G A K + G++ E + + C++ +AS
Sbjct: 461 KDIVAWSAMLAGYAQAGETEAAIKIFSELTKGGVKPNEFTFSSILNVCAATTAS 514
Score = 44.3 bits (103), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 57/133 (42%), Gaps = 5/133 (3%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
++ ++ C S G + + + + +L + LL M+ G +++A ++F
Sbjct: 501 FSSILNVCAATTASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGHIESAEEVFKRQ 560
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN 132
+D SW MI GY + + +F EM KRK + F + V AC
Sbjct: 561 REKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDSVTF-----IGVFAACTHAGL 615
Query: 133 MELGKQVHGLLFK 145
+E G++ ++ +
Sbjct: 616 VEEGEKYFDIMVR 628
>gi|357457477|ref|XP_003599019.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355488067|gb|AES69270.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 944
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 79/271 (29%), Positives = 127/271 (46%), Gaps = 14/271 (5%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEM----MKRK 107
++ M+ CG+L AR+LF + RD +W+ + V+ +E +++F M +K
Sbjct: 340 IVCMYAKCGELKKARELFLSLEGRDLVAWSAFLSALVETGYPREVLSIFQVMQYEGLKPD 399
Query: 108 KGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
K I+ ++ C N+ LGK +H K +IS+ +L++ Y +F
Sbjct: 400 KA---------ILSILVSGCTEISNIGLGKIMHCYAIKADMESDISMVTTLVSMYIRFEL 450
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
A +F++++ + VVW I + G H F + I +S T + A
Sbjct: 451 FTYAMTLFNRMQIKDIVVWNTLINGFTKYGDPHLALEMFNRLQLSGILPDSGTMVGLFSA 510
Query: 228 CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
C + DD + G +H I K G ESD +V+ L+DMY KC L ER+F L K+
Sbjct: 511 CA-IMDDLDLGTCLHGGIEKSGFESDIHVKVALMDMYAKCGSLCSVERLFLLTKHVKDEV 569
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
SWN M+ GY+ NG EA MK ++
Sbjct: 570 SWNVMIAGYLHNGYSNEAISTFRRMKLENVR 600
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/283 (26%), Positives = 136/283 (48%), Gaps = 7/283 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ CG + +A+++FD M +RD SWA M+ GYV Y E + L +M ++G
Sbjct: 237 NSLIDMYCKCGDVHSAQRVFDRMGVRDDVSWATMMAGYVKNGCYFEGLQLLHKM---RRG 293
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
++ + +V L ++E GK+++ ++G +I + ++ Y K L+
Sbjct: 294 NVKM--NKVAVVNALLVVAEMRDLEKGKEIYNYALQMGLMSDIVVATPIVCMYAKCGELK 351
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A +F L+ + V W+A + G+ +V + F+ M E +K + S ++ C
Sbjct: 352 KARELFLSLEGRDLVAWSAFLSALVETGYPREVLSIFQVMQYEGLKPDKAILSILVSGCT 411
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ + G G+ MH +K +ESD + LV MY + L A +F + K+I W
Sbjct: 412 EISNIG-LGKIMHCYAIKADMESDISMVTTLVSMYIRFELFTYAMTLFNRM-QIKDIVVW 469
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
N ++ G+ + G A + ++ SGI + L AC+
Sbjct: 470 NTLINGFTKYGDPHLALEMFNRLQLSGILPDSGTMVGLFSACA 512
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/309 (23%), Positives = 142/309 (45%), Gaps = 13/309 (4%)
Query: 14 TCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMP 73
+ L+ CT + + G ++++ + +++ + + L+ M++ A LF+ M
Sbjct: 404 SILVSGCT-EISNIGLGKIMHCYAIKADMESDISMVTTLVSMYIRFELFTYAMTLFNRMQ 462
Query: 74 LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTMN 132
++D W +I G+ D + +F + + + P + +V + AC +
Sbjct: 463 IKDIVVWNTLINGFTKYGDPHLALEMFNRL------QLSGILPDSGTMVGLFSACAIMDD 516
Query: 133 MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH--NTVVWTAKI 190
++LG +HG + K G +I + +L++ Y K L + +F L +H + V W I
Sbjct: 517 LDLGTCLHGGIEKSGFESDIHVKVALMDMYAKCGSLCSVERLF-LLTKHVKDEVSWNVMI 575
Query: 191 VNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGL 250
G+ ++ + F+ M E ++ N TF ++L A + H I+++G
Sbjct: 576 AGYLHNGYSNEAISTFRRMKLENVRPNLVTFVTILPAVSYLSILRE-AMAFHTCIIRMGF 634
Query: 251 ESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLY 310
S + L+DMY KC LR +E+ F + +K I SWNAML Y +G A
Sbjct: 635 LSCTLIGNSLIDMYAKCGQLRYSEKCFHEMENKDTI-SWNAMLSAYAMHGQGELAVALFS 693
Query: 311 LMKASGIQI 319
+M+ S +++
Sbjct: 694 VMQESNVRV 702
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 68/288 (23%), Positives = 131/288 (45%), Gaps = 22/288 (7%)
Query: 34 NHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADY 93
NH K +N + ++N LL +H Q+ + +NS+ I Y +
Sbjct: 34 NHYLKLIN---SCKYINPLLQIHTHFLQIKNPSLIL-------YNSF---IKAYSKFHHF 80
Query: 94 QECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNIS 153
+ I L+ ++K + L + VLKAC ++ G ++ + G ++
Sbjct: 81 HKAINLYHTILK-----IGLKPDKFTFNFVLKACTSALDFHEGVNIYKDIVFNGLECDVY 135
Query: 154 LTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRER 213
+ SLI+ + K CL++A VF ++ + V W A I + + + F M E
Sbjct: 136 IGTSLIDMFCKMGCLDNARNVFDKMPVKDGVCWNAMISGLSQSLNPCEALEMFWRMQMEG 195
Query: 214 IKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDA 273
+ + + ++ A + D G C + +H +V+ + V L+DMY KC + A
Sbjct: 196 FEVDKVSILNLAPAVSRLGDVG-CCKSIHGYVVRRSICG--VVSNSLIDMYCKCGDVHSA 252
Query: 274 ERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQE 321
+RVF+ + + ++ SW M+ GY++NG Y E + L+ M+ +++ +
Sbjct: 253 QRVFDRMGVRDDV-SWATMMAGYVKNGCYFEGLQLLHKMRRGNVKMNK 299
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 83/160 (51%), Gaps = 2/160 (1%)
Query: 175 FSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDD 234
F Q+K + +++ + I + HFH+ N + + + +K + +TF+ VLKAC D
Sbjct: 56 FLQIKNPSLILYNSFIKAYSKFHHFHKAINLYHTILKIGLKPDKFTFNFVLKACTSALDF 115
Query: 235 GNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLV 294
G ++ +IV GLE D Y+ L+DM+ K L +A VF+ + K + WNAM+
Sbjct: 116 HE-GVNIYKDIVFNGLECDVYIGTSLIDMFCKMGCLDNARNVFDKMPVKDGVC-WNAMIS 173
Query: 295 GYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
G ++ EA + + M+ G ++ + I +L A S +
Sbjct: 174 GLSQSLNPCEALEMFWRMQMEGFEVDKVSILNLAPAVSRL 213
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 58/252 (23%), Positives = 98/252 (38%), Gaps = 20/252 (7%)
Query: 52 LLLMHVSCGQLDTARQLFD-EMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGH 110
L+ M+ CG L + +LF ++D SW VMI GY+ E I+ F M
Sbjct: 542 LMDMYAKCGSLCSVERLFLLTKHVKDEVSWNVMIAGYLHNGYSNEAISTFRRMKLENVRP 601
Query: 111 MLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
L+ F V +L A + H + ++G + SLI+ Y K L
Sbjct: 602 NLVTF-----VTILPAVSYLSILREAMAFHTCIIRMGFLSCTLIGNSLIDMYAKCGQLRY 656
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC-- 228
++ F +++ +T+ W A + G F M ++ +S ++ SVL AC
Sbjct: 657 SEKCFHEMENKDTISWNAMLSAYAMHGQGELAVALFSVMQESNVRVDSVSYISVLSACRH 716
Query: 229 -----GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
G D + + H S E+ C +VD+ G L + + + +
Sbjct: 717 SGLIQEGWDIFASMCEKHHVE------PSMEHYAC-MVDLLGCAGLFDEVLSLLNKMTTE 769
Query: 284 KNIASWNAMLVG 295
+ W A+L
Sbjct: 770 PDARVWGALLAA 781
>gi|242076488|ref|XP_002448180.1| hypothetical protein SORBIDRAFT_06g022530 [Sorghum bicolor]
gi|241939363|gb|EES12508.1| hypothetical protein SORBIDRAFT_06g022530 [Sorghum bicolor]
Length = 1029
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 81/293 (27%), Positives = 140/293 (47%), Gaps = 9/293 (3%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L N +L M+ G +D A+ LF +P +D SW +IVG + +E + M+K
Sbjct: 463 LFVANAMLDMYSKLGAIDVAKALFSLIPGKDSVSWNALIVGLAHNEEEEEAVY----MLK 518
Query: 106 RKKGHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
R K + + P + + AC E GKQ+H K N ++ SLI+ Y K
Sbjct: 519 RMKCYG--IAPDEVSFATAINACSNIRATETGKQIHCASIKYNVCSNHAVGSSLIDLYSK 576
Query: 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
F +E + V + + + V A I + + F+++ ++ K +++TF+S+
Sbjct: 577 FGDVESSRKVLAHVDASSMVPINALITGLVQNNREDEAIELFQQVLKDGFKPSNFTFASI 636
Query: 225 LKACGGVDDDGNCGRQMHANIVKIGL-ESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
L C G G+Q+H+ +K L D + LV +Y KC+LL DA ++ + D
Sbjct: 637 LSGCTG-PVSSVIGKQVHSYTLKSALLNQDTSLGISLVGIYLKCKLLEDANKLLAEVPDH 695
Query: 284 KNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
KN+ W A + GY +NG ++ + M++ ++ E+ + ACS I+A
Sbjct: 696 KNLVEWTATISGYAQNGYSDQSLVMFWRMRSHDVRSDEATFASVLKACSEIAA 748
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 82/285 (28%), Positives = 141/285 (49%), Gaps = 8/285 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+ L+ ++ G ++++R++ + +I G V E I LF +++K
Sbjct: 568 SSLIDLYSKFGDVESSRKVLAHVDASSMVPINALITGLVQNNREDEAIELFQQVLKDGFK 627
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGS-SRNISLTGSLINFYGKFRCL 168
F + +L C ++ +GKQVH K +++ SL SL+ Y K + L
Sbjct: 628 PSNFTFAS-----ILSGCTGPVSSVIGKQVHSYTLKSALLNQDTSLGISLVGIYLKCKLL 682
Query: 169 EDADFVFSQLKRH-NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
EDA+ + +++ H N V WTA I + G+ Q F M ++ + TF+SVLKA
Sbjct: 683 EDANKLLAEVPDHKNLVEWTATISGYAQNGYSDQSLVMFWRMRSHDVRSDEATFASVLKA 742
Query: 228 CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
C + + G+++H I+K G S E L+DMY KC + + +F+ + +K+NI
Sbjct: 743 CSEIAALTD-GKEIHGLIIKSGFVSYETAASALMDMYSKCGDVISSFEIFKELKNKQNIM 801
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
WN+M+VG+ +NG EA M+ S ++ E + + IACS
Sbjct: 802 PWNSMIVGFAKNGYANEALLLFQKMQESQLKPDEVTLLGVLIACS 846
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 84/282 (29%), Positives = 131/282 (46%), Gaps = 7/282 (2%)
Query: 57 VSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP 116
S G+L AR L + + +W +I Y E L+ +M +++G L+
Sbjct: 272 ASMGRLSDARTLLKRIQMPSTVAWNAVISSYSQSGLESEVFGLYKDM--KRQG---LMPT 326
Query: 117 AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFS 176
+L A + G+Q+H K G N+ + SLIN Y K C+ DA VF
Sbjct: 327 RSTFASMLSAAASMTAFDEGQQIHAAAVKHGLDANVFVGSSLINLYVKHGCISDAKKVFD 386
Query: 177 QLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGN 236
N V+W A + + + F+ M R ++ + +TF SVL AC +D +
Sbjct: 387 FSTEKNIVMWNAMLYGFVQNDLQEETIQMFQYMRRADLEADDFTFVSVLGACINLDSL-D 445
Query: 237 CGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGY 296
GRQ+H +K +++D +V ++DMY K + A+ +F LI K ++ SWNA++VG
Sbjct: 446 IGRQVHCITIKNSMDADLFVANAMLDMYSKLGAIDVAKALFSLIPGKDSV-SWNALIVGL 504
Query: 297 IRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASK 338
N EA L MK GI E ACS+I A++
Sbjct: 505 AHNEEEEEAVYMLKRMKCYGIAPDEVSFATAINACSNIRATE 546
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/272 (26%), Positives = 128/272 (47%), Gaps = 46/272 (16%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ C ++ AR++FD + D WA MI GY V YQ+ + LF+ M K
Sbjct: 201 LVDMYAKCVEVKDARRVFDGIACPDTICWASMIAGYHRVGRYQQALALFSRMEK------ 254
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+GS+ + ++I+ L DA
Sbjct: 255 ----------------------------------MGSAPDQVTYVTIISTLASMGRLSDA 280
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
+ +++ +TV W A I + + G +VF +K+M R+ + TF+S+L A +
Sbjct: 281 RTLLKRIQMPSTVAWNAVISSYSQSGLESEVFGLYKDMKRQGLMPTRSTFASMLSAAASM 340
Query: 232 D--DDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
D+ G+Q+HA VK GL+++ +V L+++Y K + DA++VF+ + KNI W
Sbjct: 341 TAFDE---GQQIHAAAVKHGLDANVFVGSSLINLYVKHGCISDAKKVFDFSTE-KNIVMW 396
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQE 321
NAML G+++N L E + M+ + ++ +
Sbjct: 397 NAMLYGFVQNDLQEETIQMFQYMRRADLEADD 428
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 65/291 (22%), Positives = 131/291 (45%), Gaps = 7/291 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+ L+ ++V G + A+++FD ++ W M+ G+V +E I +F + M+R
Sbjct: 366 SSLINLYVKHGCISDAKKVFDFSTEKNIVMWNAMLYGFVQNDLQEETIQMF-QYMRRAD- 423
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
L + V VL AC+ ++++G+QVH + K ++ + ++++ Y K ++
Sbjct: 424 ---LEADDFTFVSVLGACINLDSLDIGRQVHCITIKNSMDADLFVANAMLDMYSKLGAID 480
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A +FS + ++V W A IV + K M I + +F++ + AC
Sbjct: 481 VAKALFSLIPGKDSVSWNALIVGLAHNEEEEEAVYMLKRMKCYGIAPDEVSFATAINACS 540
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ G+Q+H +K + S+ V L+D+Y K + + +V VD ++
Sbjct: 541 NIRAT-ETGKQIHCASIKYNVCSNHAVGSSLIDLYSKFGDVESSRKVLAH-VDASSMVPI 598
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKIN 340
NA++ G ++N EA + + G + + C+ +S I
Sbjct: 599 NALITGLVQNNREDEAIELFQQVLKDGFKPSNFTFASILSGCTGPVSSVIG 649
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 65/129 (50%), Gaps = 11/129 (8%)
Query: 193 NCREGHFHQVFNDFKEMGRERI--KKNSYTFSSVLKAC---GGVDDDGNCGRQMHANIVK 247
+ R G V + F+ + R I + + + VL AC G ++ GRQ+H +++K
Sbjct: 134 HARSGSPRDVLDAFQRL-RCSIGGTPDQFGLAVVLSACSRLGALEQ----GRQVHCDVLK 188
Query: 248 IGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATK 307
G S + Q GLVDMY KC ++DA RVF+ I I W +M+ GY R G Y +A
Sbjct: 189 SGFCSSAFCQAGLVDMYAKCVEVKDARRVFDGIACPDTIC-WASMIAGYHRVGRYQQALA 247
Query: 308 FLYLMKASG 316
M+ G
Sbjct: 248 LFSRMEKMG 256
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 78/217 (35%), Gaps = 37/217 (17%)
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
+ VL AC +E G+QVH + K G + L++ Y K ++DA VF +
Sbjct: 163 LAVVLSACSRLGALEQGRQVHCDVLKSGFCSSAFCQAGLVDMYAKCVEVKDARRVFDGIA 222
Query: 180 RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGR 239
+T+ W + I R G + Q F M
Sbjct: 223 CPDTICWASMIAGYHRVGRYQQALALFSRME----------------------------- 253
Query: 240 QMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRN 299
K+G D+ ++ L DA + + I +A WNA++ Y ++
Sbjct: 254 -------KMGSAPDQVTYVTIISTLASMGRLSDARTLLKRIQMPSTVA-WNAVISSYSQS 305
Query: 300 GLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
GL E MK G+ S + A +S++A
Sbjct: 306 GLESEVFGLYKDMKRQGLMPTRSTFASMLSAAASMTA 342
>gi|115459414|ref|NP_001053307.1| Os04g0514500 [Oryza sativa Japonica Group]
gi|32482936|emb|CAE02340.1| OSJNBb0072M01.1 [Oryza sativa Japonica Group]
gi|38345689|emb|CAD41109.2| OSJNBb0070J16.5 [Oryza sativa Japonica Group]
gi|113564878|dbj|BAF15221.1| Os04g0514500 [Oryza sativa Japonica Group]
gi|215768472|dbj|BAH00701.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218195211|gb|EEC77638.1| hypothetical protein OsI_16630 [Oryza sativa Indica Group]
Length = 1027
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 82/285 (28%), Positives = 140/285 (49%), Gaps = 8/285 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+ L+ ++ G ++++R++F ++ +I G+V + E I LF +++K
Sbjct: 566 SSLIDLYSKHGDVESSRKIFAQVDASSIVPINALIAGFVQNNNEDEAIQLFQQVLKDGLK 625
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTG-SLINFYGKFRCL 168
+ F + +L C ++N +GKQVH K G + +L G SL Y K + L
Sbjct: 626 PSSVTFSS-----ILSGCSGSLNSAIGKQVHCYTLKSGVLYDDTLLGVSLAGIYLKSKML 680
Query: 169 EDADFVFSQLKRH-NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
EDA+ + +++ H N WTA I + G+ F M ++ + TF+SVLKA
Sbjct: 681 EDANKLLTEMPDHKNLFEWTAIISGYAQNGYGDHSLVSFWRMRHCNVRSDEATFASVLKA 740
Query: 228 CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
C V + G+++H I K G S E L+DMY KC + + F+ + +K++I
Sbjct: 741 CSDVTAFAD-GKEIHGLITKSGFGSYETATSALIDMYSKCGDVISSFEAFKELKNKQDIM 799
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
WN+M+VG+ +NG EA M+ I+ E + IAC+
Sbjct: 800 PWNSMIVGFAKNGYADEALLLFQKMEELQIKPDEVTFLGVLIACT 844
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 80/294 (27%), Positives = 140/294 (47%), Gaps = 9/294 (3%)
Query: 45 TLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMM 104
+L N L M+ G + A+ LF +P +D SW + VG + +E + M+
Sbjct: 460 SLFVANATLDMYSKYGAIGDAKALFSLIPYKDSISWNALTVGLAQNLEEEEAVC----ML 515
Query: 105 KRKKGHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYG 163
KR + H + P + + AC E GKQ+H L K G N ++ SLI+ Y
Sbjct: 516 KRMRLHG--ITPDDVSFSTAINACSNIRATETGKQIHCLAIKYGICSNHAVGSSLIDLYS 573
Query: 164 KFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSS 223
K +E + +F+Q+ + V A I + + + F+++ ++ +K +S TFSS
Sbjct: 574 KHGDVESSRKIFAQVDASSIVPINALIAGFVQNNNEDEAIQLFQQVLKDGLKPSSVTFSS 633
Query: 224 VLKACGGVDDDGNCGRQMHANIVKIG-LESDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282
+L C G + G+Q+H +K G L D + L +Y K ++L DA ++ + D
Sbjct: 634 ILSGCSGSLNSA-IGKQVHCYTLKSGVLYDDTLLGVSLAGIYLKSKMLEDANKLLTEMPD 692
Query: 283 KKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
KN+ W A++ GY +NG + + M+ ++ E+ + ACS ++A
Sbjct: 693 HKNLFEWTAIISGYAQNGYGDHSLVSFWRMRHCNVRSDEATFASVLKACSDVTA 746
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 79/286 (27%), Positives = 130/286 (45%), Gaps = 44/286 (15%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ CG + AR++FD + D W+ MI Y V YQE + LF+ M
Sbjct: 199 LVDMYAKCGDVPNARRVFDGIACPDTICWSSMIACYHRVGCYQEALALFSRMD------- 251
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
K+GS+ + ++I+ L+ A
Sbjct: 252 ---------------------------------KMGSAPDQVTLVTIISTLASSGRLDHA 278
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
+ ++ +TV W A I + + G V +K+M + TF+S+L A +
Sbjct: 279 TALLKKMPTPSTVAWNAVISGHAQSGLEFNVLGLYKDMRSWGLWPTRSTFASMLSAAANM 338
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
G+QMHA V GL+++ +V L+++Y KC DA+ VF+L + KNI WNA
Sbjct: 339 KAFVE-GQQMHAAAVMHGLDANVFVGSSLINLYAKCGCPSDAKNVFDLSCE-KNIVMWNA 396
Query: 292 MLVGYIRNGLYVEATK-FLYLMKASGIQIQESLINDLRIACSSISA 336
ML G+++N L EA + F Y+M+ + +Q E + AC+ +S+
Sbjct: 397 MLTGFVQNELPEEAIRMFQYMMRYT-LQTDEFTFVSILGACTYLSS 441
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 91/341 (26%), Positives = 149/341 (43%), Gaps = 17/341 (4%)
Query: 2 DNLCLPIT---TDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVS 58
D + P T + M C + +Q+ A L + + K + P + L ++ S
Sbjct: 217 DGIACPDTICWSSMIACYHRVGCYQE----ALALFSRMDK-MGSAPDQVTLVTIISTLAS 271
Query: 59 CGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAW 118
G+LD A L +MP +W +I G+ + L+ +M R G ++P
Sbjct: 272 SGRLDHATALLKKMPTPSTVAWNAVISGHAQSGLEFNVLGLYKDM--RSWG----LWPTR 325
Query: 119 IIVCVLKACVCTMNMEL-GKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQ 177
+ + M + G+Q+H G N+ + SLIN Y K C DA VF
Sbjct: 326 STFASMLSAAANMKAFVEGQQMHAAAVMHGLDANVFVGSSLINLYAKCGCPSDAKNVFDL 385
Query: 178 LKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC 237
N V+W A + + + F+ M R ++ + +TF S+L AC +
Sbjct: 386 SCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYTLQTDEFTFVSILGACTYLSSF-YL 444
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYI 297
G+Q+H +K ++ +V +DMY K + DA+ +F LI K +I SWNA+ VG
Sbjct: 445 GKQVHCVTIKNCMDISLFVANATLDMYSKYGAIGDAKALFSLIPYKDSI-SWNALTVGLA 503
Query: 298 RNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASK 338
+N EA L M+ GI + + ACS+I A++
Sbjct: 504 QNLEEEEAVCMLKRMRLHGITPDDVSFSTAINACSNIRATE 544
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 69/291 (23%), Positives = 129/291 (44%), Gaps = 7/291 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+ L+ ++ CG A+ +FD ++ W M+ G+V +E I +F MM+
Sbjct: 364 SSLINLYAKCGCPSDAKNVFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMR---- 419
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
L + V +L AC + LGKQVH + K ++ + + ++ Y K+ +
Sbjct: 420 -YTLQTDEFTFVSILGACTYLSSFYLGKQVHCVTIKNCMDISLFVANATLDMYSKYGAIG 478
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
DA +FS + +++ W A V + + K M I + +FS+ + AC
Sbjct: 479 DAKALFSLIPYKDSISWNALTVGLAQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINACS 538
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ G+Q+H +K G+ S+ V L+D+Y K + + ++F VD +I
Sbjct: 539 NIRAT-ETGKQIHCLAIKYGICSNHAVGSSLIDLYSKHGDVESSRKIFAQ-VDASSIVPI 596
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKIN 340
NA++ G+++N EA + + G++ + + CS S I
Sbjct: 597 NALIAGFVQNNNEDEAIQLFQQVLKDGLKPSSVTFSSILSGCSGSLNSAIG 647
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 79/185 (42%), Gaps = 11/185 (5%)
Query: 137 KQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCRE 196
+ +HG + + GS L SL+ Y K + A + ++ + + R
Sbjct: 76 RALHGRILRGGSPLLGRLGDSLVELYCKSGRVGYAWSALGYAGERASGAASSLLSCHARS 135
Query: 197 GHFHQVFNDFKEM-----GRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLE 251
G V F+ + GR + + + VL AC V GRQ+H ++VK G
Sbjct: 136 GSPGDVLGAFRYIRCTAGGR----PDQFGLAVVLSACSRVGVLAY-GRQVHCDVVKSGFS 190
Query: 252 SDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYL 311
S + + LVDMY KC + +A RVF+ I I W++M+ Y R G Y EA
Sbjct: 191 SSVFCEAALVDMYAKCGDVPNARRVFDGIACPDTIC-WSSMIACYHRVGCYQEALALFSR 249
Query: 312 MKASG 316
M G
Sbjct: 250 MDKMG 254
Score = 41.2 bits (95), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 3/116 (2%)
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
+ VL AC + G+QVH + K G S ++ +L++ Y K + +A VF +
Sbjct: 161 LAVVLSACSRVGVLAYGRQVHCDVVKSGFSSSVFCEAALVDMYAKCGDVPNARRVFDGIA 220
Query: 180 RHNTVVWTAKIVNNCREGHFHQ---VFNDFKEMGRERIKKNSYTFSSVLKACGGVD 232
+T+ W++ I R G + + +F+ +MG + T S L + G +D
Sbjct: 221 CPDTICWSSMIACYHRVGCYQEALALFSRMDKMGSAPDQVTLVTIISTLASSGRLD 276
>gi|326511827|dbj|BAJ92058.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 581
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 86/286 (30%), Positives = 136/286 (47%), Gaps = 9/286 (3%)
Query: 33 LNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMP--LRDFNSWAVMIVGYVDV 90
L+ + ++ + LN L+ M+ SC TAR + D P D SW +I GY+
Sbjct: 115 LHALSVKLGLSSDTFVLNTLINMYSSCSYPSTARSVLDSAPKGASDTVSWNTIIAGYIHA 174
Query: 91 ADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSR 150
+ + F++M KG ++L ++ L AC T M++GK H LL G
Sbjct: 175 GLPNKALQAFSQM---AKGQVML--DDVTLLNALVACARTCMMKVGKLCHALLVTNGFEI 229
Query: 151 NISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMG 210
N + SLI+ Y K +EDA +F + N V WT+ I + G + F++M
Sbjct: 230 NCYMGSSLISMYAKCGQVEDARRIFDGMPDRNAVCWTSMISGYTQLGQSKEAIKLFRDMQ 289
Query: 211 RERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLL 270
+K + T S+V+ +CG + + GR +HA GL D V+ L+DMY KC +
Sbjct: 290 IAGVKVDDATISTVVSSCGQMGAL-DLGRYVHAYCDIHGLGKDISVKNSLIDMYSKCGDI 348
Query: 271 RDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASG 316
+ A +F +V + N SW +++G+ NGL EA M+ G
Sbjct: 349 KKAYDIFCGMVKRDNF-SWTVIIMGFAANGLSGEALDLFAQMEEEG 393
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 119/249 (47%), Gaps = 14/249 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+ L+ M+ CGQ++ AR++FD MP R+ W MI GY + +E I LF +M
Sbjct: 235 SSLISMYAKCGQVEDARRIFDGMPDRNAVCWTSMISGYTQLGQSKEAIKLFRDMQIAG-- 292
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ I V+ +C ++LG+ VH G ++IS+ SLI+ Y K ++
Sbjct: 293 ---VKVDDATISTVVSSCGQMGALDLGRYVHAYCDIHGLGKDISVKNSLIDMYSKCGDIK 349
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRER-IKKNSYTFSSVLKAC 228
A +F + + + WT I+ G + + F +M E + N TF VL +C
Sbjct: 350 KAYDIFCGMVKRDNFSWTVIIMGFAANGLSGEALDLFAQMEEEGGVMPNEITFLGVLTSC 409
Query: 229 --GGVDDDGNCGRQMH--ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
GG+ + G R H ++I I + Y C +VD+ G+ +LL +AE+ + +
Sbjct: 410 SHGGLVEQGY--RHFHRMSSIYGIAPRIEHY-GC-MVDLLGRAKLLAEAEQFIKEMPIAP 465
Query: 285 NIASWNAML 293
+ W ++L
Sbjct: 466 DAVMWRSLL 474
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 96/208 (46%), Gaps = 12/208 (5%)
Query: 135 LGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR--HNTVVWTAKIVN 192
+G Q+H L KLG S + + +LIN Y A V + +TV W I
Sbjct: 111 VGAQLHALSVKLGLSSDTFVLNTLINMYSSCSYPSTARSVLDSAPKGASDTVSWNTIIAG 170
Query: 193 NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC----GRQMHANIVKI 248
G ++ F +M + ++ + T + L AC C G+ HA +V
Sbjct: 171 YIHAGLPNKALQAFSQMAKGQVMLDDVTLLNALVACAR-----TCMMKVGKLCHALLVTN 225
Query: 249 GLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKF 308
G E + Y+ L+ MY KC + DA R+F+ + D+ N W +M+ GY + G EA K
Sbjct: 226 GFEINCYMGSSLISMYAKCGQVEDARRIFDGMPDR-NAVCWTSMISGYTQLGQSKEAIKL 284
Query: 309 LYLMKASGIQIQESLINDLRIACSSISA 336
M+ +G+++ ++ I+ + +C + A
Sbjct: 285 FRDMQIAGVKVDDATISTVVSSCGQMGA 312
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 1/104 (0%)
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIV-DKKNIASWNAMLVGY 296
G Q+HA VK+GL SD +V L++MY C A V + + SWN ++ GY
Sbjct: 112 GAQLHALSVKLGLSSDTFVLNTLINMYSSCSYPSTARSVLDSAPKGASDTVSWNTIIAGY 171
Query: 297 IRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKIN 340
I GL +A + M + + + + + +AC+ K+
Sbjct: 172 IHAGLPNKALQAFSQMAKGQVMLDDVTLLNALVACARTCMMKVG 215
>gi|410110027|gb|AFV61093.1| pentatricopeptide repeat-containing protein 81, partial [Lippia
micromera]
Length = 354
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 79/289 (27%), Positives = 137/289 (47%), Gaps = 10/289 (3%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMP-LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRK 107
LN + + CG + A+++FD RD +W M+ Y++ + + +F +M+K++
Sbjct: 73 LNATITAYAECGCXEDAKRVFDSSDGYRDLVTWNSMLAAYLEHSLEEYGFNIFLDMVKQR 132
Query: 108 KGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF-- 165
L A+ + V+ AC LGK +HG + K G + ++ +L++ Y K
Sbjct: 133 -----LEMDAYTLSSVISACFEDTQQSLGKSLHGFVIKKGLDQVTQISNALVSMYLKSNS 187
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
R +EDA +F + + V W + + G F+ + + + YTF++VL
Sbjct: 188 RNVEDALKIFXXINVKDLVSWNTILTGLSQNGLSENALRLFQNVHLNHLVTDQYTFAAVL 247
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
++C + GRQ+H +VK G E +EYV L+ MY KC ++ DA FE K+
Sbjct: 248 RSCSDLAX-LQLGRQIHVLVVKSGFEGNEYVASALIFMYSKCGIIEDAWESFE-SSHKET 305
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
+WN+++ Y ++G A YLM I++ ACS I
Sbjct: 306 SVTWNSIIFAYAQHGQGKIALDLFYLMTERXIKLDHVTFVAALTACSHI 354
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/235 (29%), Positives = 114/235 (48%), Gaps = 12/235 (5%)
Query: 79 SWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVF-PAWIIVCVLKACVCTMNMELGK 137
SW +I GY ++ + Z CITLF M G F P ++C ++ +L +
Sbjct: 2 SWNALIGGYAEMGNLZRCITLFVGMEMEGXGVDDATFAPLLTLLCDAES------YDLTR 55
Query: 138 QVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVF-SQLKRHNTVVWTAKIVNNCRE 196
Q+HG + K G ++ + I Y + C EDA VF S + V W + +
Sbjct: 56 QLHGKIMKRGLEHENTVLNATITAYAECGCXEDAKRVFDSSDGYRDLVTWNSMLAAYLEH 115
Query: 197 GHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYV 256
FN F +M ++R++ ++YT SSV+ AC D + G+ +H ++K GL+ +
Sbjct: 116 SLEEYGFNIFLDMVKQRLEMDAYTLSSVISACFE-DTQQSLGKSLHGFVIKKGLDQVTQI 174
Query: 257 QCGLVDMYGK--CRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFL 309
LV MY K R + DA ++F I + K++ SWN +L G +NGL A +
Sbjct: 175 SNALVSMYLKSNSRNVEDALKIFXXI-NVKDLVSWNTILTGLSQNGLSENALRLF 228
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 3/119 (2%)
Query: 184 VVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA-CGGVDDDGNCGRQMH 242
V W A I G+ + F M E + TF+ +L C D RQ+H
Sbjct: 1 VSWNALIGGYAEMGNLZRCITLFVGMEMEGXGVDDATFAPLLTLLCDAESYD--LTRQLH 58
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGL 301
I+K GLE + V + Y +C DA+RVF+ +++ +WN+ML Y+ + L
Sbjct: 59 GKIMKRGLEHENTVLNATITAYAECGCXEDAKRVFDSSDGYRDLVTWNSMLAAYLEHSL 117
>gi|15233590|ref|NP_193861.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207660|sp|Q9STE1.1|PP333_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21300
gi|3402749|emb|CAA20195.1| putative protein [Arabidopsis thaliana]
gi|7268926|emb|CAB79129.1| putative protein [Arabidopsis thaliana]
gi|332659037|gb|AEE84437.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 857
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 84/313 (26%), Positives = 150/313 (47%), Gaps = 11/313 (3%)
Query: 4 LCLPITTDMYT--CLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQ 61
LC ++ D+ T CL+K C K+ G + L+ + + + L+ ++ G+
Sbjct: 130 LCFGVSPDVSTFPCLVKACVALKNFKG-IDFLSDTVSSLGMDCNEFVASSLIKAYLEYGK 188
Query: 62 LDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIV 121
+D +LFD + +D W VM+ GY I F+ M + + F
Sbjct: 189 IDVPSKLFDRVLQKDCVIWNVMLNGYAKCGALDSVIKGFSVMRMDQISPNAVTFD----- 243
Query: 122 CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH 181
CVL C + ++LG Q+HGL+ G S+ SL++ Y K +DA +F + R
Sbjct: 244 CVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIKNSLLSMYSKCGRFDDASKLFRMMSRA 303
Query: 182 NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQM 241
+TV W I + G + F EM + ++ TFSS+L + ++ C +Q+
Sbjct: 304 DTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDAITFSSLLPSVSKFENLEYC-KQI 362
Query: 242 HANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGL 301
H I++ + D ++ L+D Y KCR + A+ +F + ++ + AM+ GY+ NGL
Sbjct: 363 HCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQ-CNSVDVVVFTAMISGYLHNGL 421
Query: 302 YVEATK-FLYLMK 313
Y+++ + F +L+K
Sbjct: 422 YIDSLEMFRWLVK 434
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 85/269 (31%), Positives = 127/269 (47%), Gaps = 9/269 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N LL M+ CG+ D A +LF M D +W MI GYV +E +T F EM+
Sbjct: 278 NSLLSMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSG-- 335
Query: 110 HMLLVFPAWIIVCVLKACVCTM-NMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
V P I L V N+E KQ+H + + S +I LT +LI+ Y K R +
Sbjct: 336 ----VLPDAITFSSLLPSVSKFENLEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGV 391
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
A +FSQ + VV+TA I G + F+ + + +I N T S+L
Sbjct: 392 SMAQNIFSQCNSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSILPVI 451
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
G+ GR++H I+K G ++ + C ++DMY KC + A +FE + K++I S
Sbjct: 452 -GILLALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFERL-SKRDIVS 509
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGI 317
WN+M+ ++ A M SGI
Sbjct: 510 WNSMITRCAQSDNPSAAIDIFRQMGVSGI 538
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 68/272 (25%), Positives = 125/272 (45%), Gaps = 15/272 (5%)
Query: 51 RLLLMHVSCGQLDTARQLFDEMPLR--DFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
R+L M+ CG ++F + LR W +I +V + + + +M+
Sbjct: 75 RILGMYAMCGSFSDCGKMFYRLDLRRSSIRPWNSIISSFVRNGLLNQALAFYFKMLCFGV 134
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+ FP C++KACV N + + + LG N + SLI Y ++ +
Sbjct: 135 SPDVSTFP-----CLVKACVALKNFKGIDFLSDTVSSLGMDCNEFVASSLIKAYLEYGKI 189
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+ +F ++ + + V+W + + G V F M ++I N+ TF VL C
Sbjct: 190 DVPSKLFDRVLQKDCVIWNVMLNGYAKCGALDSVIKGFSVMRMDQISPNAVTFDCVLSVC 249
Query: 229 GG---VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
+D G Q+H +V G++ + ++ L+ MY KC DA ++F ++ + +
Sbjct: 250 ASKLLID----LGVQLHGLVVVSGVDFEGSIKNSLLSMYSKCGRFDDASKLFRMM-SRAD 304
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGI 317
+WN M+ GY+++GL E+ F Y M +SG+
Sbjct: 305 TVTWNCMISGYVQSGLMEESLTFFYEMISSGV 336
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/277 (24%), Positives = 133/277 (48%), Gaps = 15/277 (5%)
Query: 26 SAGAFELLNHIRK------RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNS 79
S FE L + ++ R +I + + L+ + C + A+ +F + D
Sbjct: 349 SVSKFENLEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSVDVVV 408
Query: 80 WAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI-IVCVLKACVCTMNMELGKQ 138
+ MI GY+ Y + + +F ++K K + P I +V +L + ++LG++
Sbjct: 409 FTAMISGYLHNGLYIDSLEMFRWLVKVK------ISPNEITLVSILPVIGILLALKLGRE 462
Query: 139 VHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGH 198
+HG + K G ++ ++I+ Y K + A +F +L + + V W + I + +
Sbjct: 463 LHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFERLSKRDIVSWNSMITRCAQSDN 522
Query: 199 FHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQC 258
+ F++MG I + + S+ L AC + + + G+ +H ++K L SD Y +
Sbjct: 523 PSAAIDIFRQMGVSGICYDCVSISAALSACANLPSE-SFGKAIHGFMIKHSLASDVYSES 581
Query: 259 GLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
L+DMY KC L+ A VF+ + +KNI SWN+++
Sbjct: 582 TLIDMYAKCGNLKAAMNVFK-TMKEKNIVSWNSIIAA 617
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 99/240 (41%), Gaps = 6/240 (2%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+ CG+++ A ++F+ + RD SW MI + I +F +M G +
Sbjct: 485 MYAKCGRMNLAYEIFERLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQM-----GVSGIC 539
Query: 115 FPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFV 174
+ I L AC + GK +HG + K + ++ +LI+ Y K L+ A V
Sbjct: 540 YDCVSISAALSACANLPSESFGKAIHGFMIKHSLASDVYSESTLIDMYAKCGNLKAAMNV 599
Query: 175 FSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEM-GRERIKKNSYTFSSVLKACGGVDD 233
F +K N V W + I G F EM + I+ + TF ++ +C V D
Sbjct: 600 FKTMKEKNIVSWNSIIAACGNHGKLKDSLCLFHEMVEKSGIRPDQITFLEIISSCCHVGD 659
Query: 234 DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
R + G++ + +VD++G+ L +A + + + W +L
Sbjct: 660 VDEGVRFFRSMTEDYGIQPQQEHYACVVDLFGRAGRLTEAYETVKSMPFPPDAGVWGTLL 719
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVF-ELIVDKKNIASWNAMLVGY 296
G+Q+HA ++ + D Y ++ MY C D ++F L + + +I WN+++ +
Sbjct: 54 GKQVHAFLIVNSISGDSYTDERILGMYAMCGSFSDCGKMFYRLDLRRSSIRPWNSIISSF 113
Query: 297 IRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
+RNGL +A F + M G+ S L AC ++
Sbjct: 114 VRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVAL 151
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/213 (21%), Positives = 89/213 (41%), Gaps = 4/213 (1%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL--KR 180
+L+AC + GKQVH L S + ++ Y D +F +L +R
Sbjct: 41 LLQACSNPNLLRQGKQVHAFLIVNSISGDSYTDERILGMYAMCGSFSDCGKMFYRLDLRR 100
Query: 181 HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQ 240
+ W + I + R G +Q + +M + + TF ++KAC + +
Sbjct: 101 SSIRPWNSIISSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFKGIDF- 159
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
+ + +G++ +E+V L+ Y + + ++F+ ++ +K+ WN ML GY + G
Sbjct: 160 LSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVPSKLFDRVL-QKDCVIWNVMLNGYAKCG 218
Query: 301 LYVEATKFLYLMKASGIQIQESLINDLRIACSS 333
K +M+ I + + C+S
Sbjct: 219 ALDSVIKGFSVMRMDQISPNAVTFDCVLSVCAS 251
>gi|302785461|ref|XP_002974502.1| hypothetical protein SELMODRAFT_101093 [Selaginella moellendorffii]
gi|300158100|gb|EFJ24724.1| hypothetical protein SELMODRAFT_101093 [Selaginella moellendorffii]
Length = 615
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 82/273 (30%), Positives = 135/273 (49%), Gaps = 10/273 (3%)
Query: 48 FLNRLLL-MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR 106
FL+ LL+ M+ CG L A+++FD M ++ SW +++ G+V E I LF M +
Sbjct: 77 FLSNLLVDMYGKCGSLVEAKRVFDAMQHKNVFSWTMLMAGFVQSGRGVEAIQLFHRMCQE 136
Query: 107 KKGHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
+ P + ++ + +C + G+++H G ++ ++IN YGK
Sbjct: 137 GE------LPDRVALLKFIDSCGAAKALSQGREIHSAAASCGMDSDLVTANAIINMYGKC 190
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
+ +A VF+++ N + W+ I C+ + FK M +E ++ + T+ SVL
Sbjct: 191 GSIGEAFAVFTRMPEKNVISWSTMIAAFCQNELADEALLFFKLMQQEGMELDRITYVSVL 250
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
A V G+ +H IV GL++ V LV+MYGKC DA VF+ +V+ KN
Sbjct: 251 DAYTSVGAL-ELGKALHVRIVYAGLDTSIVVGNTLVNMYGKCGSPDDARDVFDSMVE-KN 308
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
+ SWNAML Y +NG EA M G++
Sbjct: 309 VVSWNAMLAAYGQNGRSREALALFDSMDLEGVR 341
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 70/278 (25%), Positives = 121/278 (43%), Gaps = 17/278 (6%)
Query: 25 DSAGAFELLNHIRK------RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFN 78
DS GA + L+ R+ + L+ N ++ M+ CG + A +F MP ++
Sbjct: 150 DSCGAAKALSQGREIHSAAASCGMDSDLVTANAIINMYGKCGSIGEAFAVFTRMPEKNVI 209
Query: 79 SWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQ 138
SW+ MI + E + LF ++M+++ + + V VL A +ELGK
Sbjct: 210 SWSTMIAAFCQNELADEAL-LFFKLMQQEGMELDRI----TYVSVLDAYTSVGALELGKA 264
Query: 139 VHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGH 198
+H + G +I + +L+N YGK +DA VF + N V W A + + G
Sbjct: 265 LHVRIVYAGLDTSIVVGNTLVNMYGKCGSPDDARDVFDSMVEKNVVSWNAMLAAYGQNGR 324
Query: 199 FHQVFNDFKEMGRERIKKNSYTFSSVLKAC---GGVDDDGNCGRQMHANIVKIGLESDEY 255
+ F M E ++ N TF ++L C G D + +M + G+ E
Sbjct: 325 SREALALFDSMDLEGVRPNDITFVTILYCCSHSGKFKDAVSHFVEMRQD---FGITPREV 381
Query: 256 VQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
L+DM G+ L +AE + + + + W ++L
Sbjct: 382 HFGCLIDMLGRSGKLEEAEELIQAMPVPADAVLWTSLL 419
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 98/214 (45%), Gaps = 2/214 (0%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
+++ C +E G+++H + R L+ L++ YGK L +A VF ++ N
Sbjct: 47 LIRRCAGAKALEEGRRIHRWMDSGTLDRPRFLSNLLVDMYGKCGSLVEAKRVFDAMQHKN 106
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
WT + + G + F M +E + + +CG GR++H
Sbjct: 107 VFSWTMLMAGFVQSGRGVEAIQLFHRMCQEGELPDRVALLKFIDSCGAAKALSQ-GREIH 165
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
+ G++SD +++MYGKC + +A VF + +K N+ SW+ M+ + +N L
Sbjct: 166 SAAASCGMDSDLVTANAIINMYGKCGSIGEAFAVFTRMPEK-NVISWSTMIAAFCQNELA 224
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
EA F LM+ G+++ + A +S+ A
Sbjct: 225 DEALLFFKLMQQEGMELDRITYVSVLDAYTSVGA 258
>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Glycine max]
Length = 736
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 86/289 (29%), Positives = 137/289 (47%), Gaps = 19/289 (6%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ +VS G +D AR+LFDE+P +D SW MI GYV ++E + F M +
Sbjct: 199 LITGYVSEGHVDDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEAD---- 254
Query: 112 LLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
V P +V VL AC ++ELGK + + G +N+ L +L++ Y K +
Sbjct: 255 --VSPNQSTMVSVLSACGHLRSLELGKWIGSWVRDRGFGKNLQLVNALVDMYSKCGEIGT 312
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC-- 228
A +F ++ + ++W I C + + F+ M RE + N TF +VL AC
Sbjct: 313 ARKLFDGMEDKDVILWNTMIGGYCHLSLYEEALVLFEVMLRENVTPNDVTFLAVLPACAS 372
Query: 229 -GGVDDDGNCGRQMHA----NIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
G +D G+ +HA N+ G ++ + ++ MY KC + AE+VF +
Sbjct: 373 LGALD----LGKWVHAYIDKNLKGTGNVNNVSLWTSIIVMYAKCGCVEVAEQVFRSM-GS 427
Query: 284 KNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+++ASWNAM+ G NG A M G Q + + AC+
Sbjct: 428 RSLASWNAMISGLAMNGHAERALGLFEEMINEGFQPDDITFVGVLSACT 476
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 92/187 (49%), Gaps = 9/187 (4%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L +N L+ M+ CG++ TAR+LFD M +D W MI GY ++ Y+E + LF M++
Sbjct: 294 LQLVNALVDMYSKCGEIGTARKLFDGMEDKDVILWNTMIGGYCHLSLYEEALVLFEVMLR 353
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFK----LGSSRNISLTGSLINF 161
+ F + VL AC ++LGK VH + K G+ N+SL S+I
Sbjct: 354 ENVTPNDVTF-----LAVLPACASLGALDLGKWVHAYIDKNLKGTGNVNNVSLWTSIIVM 408
Query: 162 YGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTF 221
Y K C+E A+ VF + + W A I GH + F+EM E + + TF
Sbjct: 409 YAKCGCVEVAEQVFRSMGSRSLASWNAMISGLAMNGHAERALGLFEEMINEGFQPDDITF 468
Query: 222 SSVLKAC 228
VL AC
Sbjct: 469 VGVLSAC 475
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/288 (22%), Positives = 111/288 (38%), Gaps = 38/288 (13%)
Query: 80 WAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQV 139
W +I + + LF++M+ FP+ + K+C + KQ+
Sbjct: 95 WNTLIRAHSLTPTPTSSLHLFSQMLHSGLYPNSHTFPS-----LFKSCAKSKATHEAKQL 149
Query: 140 HGLLFKLGSSRNISLTGSLINFY---GKFRC----------------------------L 168
H KL + + SLI+ Y G+ R +
Sbjct: 150 HAHALKLALHLHPHVHTSLIHMYSQVGELRHARLVFDKSTLRDAVSFTALITGYVSEGHV 209
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+DA +F ++ + V W A I + G F + F M + N T SVL AC
Sbjct: 210 DDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQSTMVSVLSAC 269
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
G + G+ + + + G + + LVDMY KC + A ++F+ + D K++
Sbjct: 270 GHLRSL-ELGKWIGSWVRDRGFGKNLQLVNALVDMYSKCGEIGTARKLFDGMED-KDVIL 327
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
WN M+ GY LY EA +M + + + AC+S+ A
Sbjct: 328 WNTMIGGYCHLSLYEEALVLFEVMLRENVTPNDVTFLAVLPACASLGA 375
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 95/235 (40%), Gaps = 37/235 (15%)
Query: 137 KQVHGLLFKLGSSRNISLTGSLINF--YGKFRCLEDADFVFSQLKRH--NTVVWTAKIVN 192
KQ+H L+ K G + LI F R L A +F + N +W I
Sbjct: 42 KQIHSLIIKSGLHNTLFAQSKLIEFCALSPSRDLSYALSLFHSIHHQPPNIFIWNTLIRA 101
Query: 193 NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLES 252
+ + F +M + NS+TF S+ K+C + +Q+HA+ +K+ L
Sbjct: 102 HSLTPTPTSSLHLFSQMLHSGLYPNSHTFPSLFKSCAK-SKATHEAKQLHAHALKLALHL 160
Query: 253 DEYVQCGLVDMYGKCRLLR-------------------------------DAERVFELIV 281
+V L+ MY + LR DA R+F+ I
Sbjct: 161 HPHVHTSLIHMYSQVGELRHARLVFDKSTLRDAVSFTALITGYVSEGHVDDARRLFDEI- 219
Query: 282 DKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
K++ SWNAM+ GY+++G + EA M+ + + +S + + AC + +
Sbjct: 220 PAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQSTMVSVLSACGHLRS 274
>gi|116310835|emb|CAH67622.1| OSIGBa0140J09.3 [Oryza sativa Indica Group]
Length = 1027
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 82/285 (28%), Positives = 140/285 (49%), Gaps = 8/285 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+ L+ ++ G ++++R++F ++ +I G+V + E I LF +++K
Sbjct: 566 SSLIDLYSKHGDVESSRKIFAQVDASSIVPINALIAGFVQNNNEDEAIQLFQQVLKDGLK 625
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTG-SLINFYGKFRCL 168
+ F + +L C ++N +GKQVH K G + +L G SL Y K + L
Sbjct: 626 PSSVTFSS-----ILSGCSGSLNSAIGKQVHCYTLKSGVLYDDTLLGVSLAGIYLKSKML 680
Query: 169 EDADFVFSQLKRH-NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
EDA+ + +++ H N WTA I + G+ F M ++ + TF+SVLKA
Sbjct: 681 EDANKLLTEMPDHKNLFEWTAIISGYAQNGYGDHSLVSFWRMRHCNVRSDEATFASVLKA 740
Query: 228 CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
C V + G+++H I K G S E L+DMY KC + + F+ + +K++I
Sbjct: 741 CSDVTAFAD-GKEIHGLITKSGFGSYETATSALIDMYSKCGDVISSFEAFKELKNKQDIM 799
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
WN+M+VG+ +NG EA M+ I+ E + IAC+
Sbjct: 800 PWNSMIVGFAKNGYADEALLLFQKMEELQIKPDEVTFLGVLIACT 844
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 80/294 (27%), Positives = 140/294 (47%), Gaps = 9/294 (3%)
Query: 45 TLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMM 104
+L N L M+ G + A+ LF +P +D SW + VG + +E + M+
Sbjct: 460 SLFVANATLDMYSKYGAIGDAKALFSLIPYKDSISWNALTVGLAQNLEEEEAVC----ML 515
Query: 105 KRKKGHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYG 163
KR + H + P + + AC E GKQ+H L K G N ++ SLI+ Y
Sbjct: 516 KRMRLHG--ITPDDVSFSTAINACSNIRATETGKQIHCLAIKYGICSNHAVGSSLIDLYS 573
Query: 164 KFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSS 223
K +E + +F+Q+ + V A I + + + F+++ ++ +K +S TFSS
Sbjct: 574 KHGDVESSRKIFAQVDASSIVPINALIAGFVQNNNEDEAIQLFQQVLKDGLKPSSVTFSS 633
Query: 224 VLKACGGVDDDGNCGRQMHANIVKIG-LESDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282
+L C G + G+Q+H +K G L D + L +Y K ++L DA ++ + D
Sbjct: 634 ILSGCSGSLNSA-IGKQVHCYTLKSGVLYDDTLLGVSLAGIYLKSKMLEDANKLLTEMPD 692
Query: 283 KKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
KN+ W A++ GY +NG + + M+ ++ E+ + ACS ++A
Sbjct: 693 HKNLFEWTAIISGYAQNGYGDHSLVSFWRMRHCNVRSDEATFASVLKACSDVTA 746
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 79/286 (27%), Positives = 130/286 (45%), Gaps = 44/286 (15%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ CG + AR++FD + D W+ MI Y V YQE + LF+ M
Sbjct: 199 LVDMYAKCGDVPNARRVFDGIACPDTICWSSMIACYHRVGCYQEALALFSRMD------- 251
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
K+GS+ + ++I+ L+ A
Sbjct: 252 ---------------------------------KMGSAPDQVTLVTIISTLASSGRLDHA 278
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
+ ++ +TV W A I + + G V +K+M + TF+S+L A +
Sbjct: 279 TALLKKMPTPSTVAWNAVISGHAQSGLEFNVLGLYKDMRSWGLWPTRSTFASMLSAAANM 338
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
G+QMHA V GL+++ +V L+++Y KC DA+ VF+L + KNI WNA
Sbjct: 339 KAFVE-GQQMHAAAVMHGLDANVFVGSSLINLYAKCGCPSDAKNVFDLSCE-KNIVMWNA 396
Query: 292 MLVGYIRNGLYVEATK-FLYLMKASGIQIQESLINDLRIACSSISA 336
ML G+++N L EA + F Y+M+ + +Q E + AC+ +S+
Sbjct: 397 MLTGFVQNELPEEAIRMFQYMMRYT-LQTDEFTFVSILGACTYLSS 441
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 91/341 (26%), Positives = 149/341 (43%), Gaps = 17/341 (4%)
Query: 2 DNLCLPIT---TDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVS 58
D + P T + M C + +Q+ A L + + K + P + L ++ S
Sbjct: 217 DGIACPDTICWSSMIACYHRVGCYQE----ALALFSRMDK-MGSAPDQVTLVTIISTLAS 271
Query: 59 CGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAW 118
G+LD A L +MP +W +I G+ + L+ +M R G ++P
Sbjct: 272 SGRLDHATALLKKMPTPSTVAWNAVISGHAQSGLEFNVLGLYKDM--RSWG----LWPTR 325
Query: 119 IIVCVLKACVCTMNMEL-GKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQ 177
+ + M + G+Q+H G N+ + SLIN Y K C DA VF
Sbjct: 326 STFASMLSAAANMKAFVEGQQMHAAAVMHGLDANVFVGSSLINLYAKCGCPSDAKNVFDL 385
Query: 178 LKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC 237
N V+W A + + + F+ M R ++ + +TF S+L AC +
Sbjct: 386 SCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYTLQTDEFTFVSILGACTYLSSF-YL 444
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYI 297
G+Q+H +K ++ +V +DMY K + DA+ +F LI K +I SWNA+ VG
Sbjct: 445 GKQVHCVTIKNCMDISLFVANATLDMYSKYGAIGDAKALFSLIPYKDSI-SWNALTVGLA 503
Query: 298 RNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASK 338
+N EA L M+ GI + + ACS+I A++
Sbjct: 504 QNLEEEEAVCMLKRMRLHGITPDDVSFSTAINACSNIRATE 544
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 69/291 (23%), Positives = 129/291 (44%), Gaps = 7/291 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+ L+ ++ CG A+ +FD ++ W M+ G+V +E I +F MM+
Sbjct: 364 SSLINLYAKCGCPSDAKNVFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMR---- 419
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
L + V +L AC + LGKQVH + K ++ + + ++ Y K+ +
Sbjct: 420 -YTLQTDEFTFVSILGACTYLSSFYLGKQVHCVTIKNCMDISLFVANATLDMYSKYGAIG 478
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
DA +FS + +++ W A V + + K M I + +FS+ + AC
Sbjct: 479 DAKALFSLIPYKDSISWNALTVGLAQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINACS 538
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ G+Q+H +K G+ S+ V L+D+Y K + + ++F VD +I
Sbjct: 539 NIRAT-ETGKQIHCLAIKYGICSNHAVGSSLIDLYSKHGDVESSRKIFAQ-VDASSIVPI 596
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKIN 340
NA++ G+++N EA + + G++ + + CS S I
Sbjct: 597 NALIAGFVQNNNEDEAIQLFQQVLKDGLKPSSVTFSSILSGCSGSLNSAIG 647
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 79/185 (42%), Gaps = 11/185 (5%)
Query: 137 KQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCRE 196
+ +HG + + GS L SL+ Y K + A + ++ + + R
Sbjct: 76 RALHGRILRGGSPLLGRLGDSLVELYCKSGRVGYAWSALGYAGERASGAASSLLSCHARS 135
Query: 197 GHFHQVFNDFKEM-----GRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLE 251
G V F+ + GR + + + VL AC V GRQ+H ++VK G
Sbjct: 136 GSPGDVLGAFRYIRCTAGGR----PDQFGLAVVLSACSRVGVLAY-GRQVHCDVVKSGFS 190
Query: 252 SDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYL 311
S + + LVDMY KC + +A RVF+ I I W++M+ Y R G Y EA
Sbjct: 191 SSVFCEAALVDMYAKCGDVPNARRVFDGIACPDTIC-WSSMIACYHRVGCYQEALALFSR 249
Query: 312 MKASG 316
M G
Sbjct: 250 MDKMG 254
Score = 41.2 bits (95), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 3/116 (2%)
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
+ VL AC + G+QVH + K G S ++ +L++ Y K + +A VF +
Sbjct: 161 LAVVLSACSRVGVLAYGRQVHCDVVKSGFSSSVFCEAALVDMYAKCGDVPNARRVFDGIA 220
Query: 180 RHNTVVWTAKIVNNCREGHFHQ---VFNDFKEMGRERIKKNSYTFSSVLKACGGVD 232
+T+ W++ I R G + + +F+ +MG + T S L + G +D
Sbjct: 221 CPDTICWSSMIACYHRVGCYQEALALFSRMDKMGSAPDQVTLVTIISTLASSGRLD 276
>gi|334185633|ref|NP_189226.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546761|sp|Q9LU94.2|PP255_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g25970
gi|332643575|gb|AEE77096.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 701
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 80/307 (26%), Positives = 143/307 (46%), Gaps = 12/307 (3%)
Query: 32 LLNHIRKRV---NIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMP-LRDFNSWAVMIVGY 87
LL + +V ++ + N ++ + CG + A+++FD + +D SW MI G+
Sbjct: 221 LLKQVHAKVLKLGLQHEITICNAMISSYADCGSVSDAKRVFDGLGGSKDLISWNSMIAGF 280
Query: 88 VDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLG 147
+ LF +M + + + +L AC + GK +HG++ K G
Sbjct: 281 SKHELKESAFELFIQMQRHWVETDIYTYTG-----LLSACSGEEHQIFGKSLHGMVIKKG 335
Query: 148 SSRNISLTGSLINFYGKFRC--LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFND 205
+ S T +LI+ Y +F +EDA +F LK + + W + I ++G
Sbjct: 336 LEQVTSATNALISMYIQFPTGTMEDALSLFESLKSKDLISWNSIITGFAQKGLSEDAVKF 395
Query: 206 FKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYG 265
F + IK + Y FS++L++C + G+Q+HA K G S+E+V L+ MY
Sbjct: 396 FSYLRSSEIKVDDYAFSALLRSCSDLAT-LQLGQQIHALATKSGFVSNEFVISSLIVMYS 454
Query: 266 KCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLIN 325
KC ++ A + F+ I K + +WNAM++GY ++GL + M +++
Sbjct: 455 KCGIIESARKCFQQISSKHSTVAWNAMILGYAQHGLGQVSLDLFSQMCNQNVKLDHVTFT 514
Query: 326 DLRIACS 332
+ ACS
Sbjct: 515 AILTACS 521
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 85/287 (29%), Positives = 137/287 (47%), Gaps = 13/287 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
NR+L ++ G L A LFDEMP RD SW MI GY ++ LF MKR
Sbjct: 39 NRILDSYIKFGFLGYANMLFDEMPKRDSVSWNTMISGYTSCGKLEDAWCLFT-CMKRSGS 97
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ + +LK +LG+QVHGL+ K G N+ + SL++ Y K +E
Sbjct: 98 DV----DGYSFSRLLKGIASVKRFDLGEQVHGLVIKGGYECNVYVGSSLVDMYAKCERVE 153
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFN--DFKEMGRERIKKNSYTFSSVLKA 227
DA F ++ N+V W A I + F EM + + ++ TF+ +L
Sbjct: 154 DAFEAFKEISEPNSVSWNALIAGFVQVRDIKTAFWLLGLMEM-KAAVTMDAGTFAPLLTL 212
Query: 228 CGGVDDDGNCG--RQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
+DD C +Q+HA ++K+GL+ + + ++ Y C + DA+RVF+ + K+
Sbjct: 213 ---LDDPMFCNLLKQVHAKVLKLGLQHEITICNAMISSYADCGSVSDAKRVFDGLGGSKD 269
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+ SWN+M+ G+ ++ L A + M+ ++ L ACS
Sbjct: 270 LISWNSMIAGFSKHELKESAFELFIQMQRHWVETDIYTYTGLLSACS 316
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 75/289 (25%), Positives = 138/289 (47%), Gaps = 9/289 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+ L+ M+ C +++ A + F E+ + SW +I G+V V D + L +M+ K
Sbjct: 140 SSLVDMYAKCERVEDAFEAFKEISEPNSVSWNALIAGFVQVRDIKTAFWLLG-LMEMKAA 198
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ A +L M L KQVH + KLG I++ ++I+ Y +
Sbjct: 199 ---VTMDAGTFAPLLTLLDDPMFCNLLKQVHAKVLKLGLQHEITICNAMISSYADCGSVS 255
Query: 170 DADFVFSQLK-RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
DA VF L + + W + I + F F +M R ++ + YT++ +L AC
Sbjct: 256 DAKRVFDGLGGSKDLISWNSMIAGFSKHELKESAFELFIQMQRHWVETDIYTYTGLLSAC 315
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGK--CRLLRDAERVFELIVDKKNI 286
G ++ G+ +H ++K GLE L+ MY + + DA +FE + K++
Sbjct: 316 SG-EEHQIFGKSLHGMVIKKGLEQVTSATNALISMYIQFPTGTMEDALSLFESL-KSKDL 373
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
SWN+++ G+ + GL +A KF +++S I++ + + L +CS ++
Sbjct: 374 ISWNSIITGFAQKGLSEDAVKFFSYLRSSEIKVDDYAFSALLRSCSDLA 422
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 79/160 (49%), Gaps = 2/160 (1%)
Query: 139 VHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGH 198
H K GS +I ++ +++ Y KF L A+ +F ++ + ++V W I G
Sbjct: 22 THCYAIKCGSISDIYVSNRILDSYIKFGFLGYANMLFDEMPKRDSVSWNTMISGYTSCGK 81
Query: 199 FHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQC 258
+ F M R + Y+FS +LK V + G Q+H ++K G E + YV
Sbjct: 82 LEDAWCLFTCMKRSGSDVDGYSFSRLLKGIASV-KRFDLGEQVHGLVIKGGYECNVYVGS 140
Query: 259 GLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIR 298
LVDMY KC + DA F+ I + N SWNA++ G+++
Sbjct: 141 SLVDMYAKCERVEDAFEAFKEI-SEPNSVSWNALIAGFVQ 179
>gi|449439723|ref|XP_004137635.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Cucumis sativus]
Length = 769
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 86/328 (26%), Positives = 155/328 (47%), Gaps = 12/328 (3%)
Query: 11 DMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKP-TLLFLNRLLLMHVSCGQLDTARQLF 69
D Y ++ C DS + H + P +L F N +L +V CG+L QLF
Sbjct: 216 DFYVSFLQRCVLTSDSRHGSAI--HAKFLKGFLPFSLFFHNHVLNFYVKCGRLSYGLQLF 273
Query: 70 DEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCVLKACV 128
DEMP R+ SW+ +I G+V E ++LF M + P + +V L AC
Sbjct: 274 DEMPERNVVSWSAIIAGFVQHGRPNEALSLFGRMHCDGT-----IMPNEFTLVSALHACS 328
Query: 129 CTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTA 188
T + Q++ + +LG N+ L + + + L +A VF +TV W A
Sbjct: 329 LTQRLICSYQIYAFIVRLGYGSNVFLMNAFLTALIRHEKLLEALEVFESCLSKDTVSWNA 388
Query: 189 KIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKI 248
+ + +F ++ ++ M E +K +++TF+S+L + + G Q+H +VK
Sbjct: 389 MMAGYLQLAYF-ELPKFWRRMNLESVKPDNFTFASILTGLAAL-SEFRLGLQVHGQLVKS 446
Query: 249 GLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKF 308
G +D V L DMY K + L D + F+ + ++ SW M G ++ G ++A +
Sbjct: 447 GYGNDICVGNSLCDMYVKNQKLLDGFKAFDEM-SSSDVCSWTQMAAGCLQCGEPMKALEV 505
Query: 309 LYLMKASGIQIQESLINDLRIACSSISA 336
+Y MK G+++ + + +C+++++
Sbjct: 506 IYEMKNVGVRLNKFTLATALNSCANLAS 533
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/276 (25%), Positives = 120/276 (43%), Gaps = 10/276 (3%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R+ + +N L + +L A ++F+ +D SW M+ GY+ +A Y E
Sbjct: 345 RLGYGSNVFLMNAFLTALIRHEKLLEALEVFESCLSKDTVSWNAMMAGYLQLA-YFELPK 403
Query: 99 LFAEMMKRKKGHMLLVFPA-WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGS 157
+ M ++ V P + +L LG QVHG L K G +I + S
Sbjct: 404 FWRRM------NLESVKPDNFTFASILTGLAALSEFRLGLQVHGQLVKSGYGNDICVGNS 457
Query: 158 LINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKN 217
L + Y K + L D F ++ + WT + G + EM ++ N
Sbjct: 458 LCDMYVKNQKLLDGFKAFDEMSSSDVCSWTQMAAGCLQCGEPMKALEVIYEMKNVGVRLN 517
Query: 218 SYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVF 277
+T ++ L +C + G++ H +K+G + D V L+DMY KC + A VF
Sbjct: 518 KFTLATALNSCANLASIEE-GKKFHGLRIKLGTDVDVCVDNALLDMYAKCGCMTSANVVF 576
Query: 278 ELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMK 313
+ D++++ SW M++G+ NG EA + M+
Sbjct: 577 RSM-DERSVVSWTTMIMGFAHNGQTKEALQIFDEMR 611
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 113/254 (44%), Gaps = 11/254 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L M+V +L + FDEM D SW M G + + + + + EM + G
Sbjct: 456 NSLCDMYVKNQKLLDGFKAFDEMSSSDVCSWTQMAAGCLQCGEPMKALEVIYEM--KNVG 513
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
L F + L +C ++E GK+ HGL KLG+ ++ + +L++ Y K C+
Sbjct: 514 VRLNKF---TLATALNSCANLASIEEGKKFHGLRIKLGTDVDVCVDNALLDMYAKCGCMT 570
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC- 228
A+ VF + + V WT I+ G + F EM + + N TF VL AC
Sbjct: 571 SANVVFRSMDERSVVSWTTMIMGFAHNGQTKEALQIFDEMRKGEAEPNHITFICVLNACS 630
Query: 229 --GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
G +D+ M A+ I D YV C +V++ G+ +++AE + + +
Sbjct: 631 QGGFIDEAWKYFSSMSAD-HGIAPSEDHYV-C-MVNLLGRAGCIKEAEDLILQMPFQPGS 687
Query: 287 ASWNAMLVGYIRNG 300
W +L + +G
Sbjct: 688 LVWQTLLGACLVHG 701
>gi|225462250|ref|XP_002263297.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
[Vitis vinifera]
gi|297736133|emb|CBI24171.3| unnamed protein product [Vitis vinifera]
Length = 687
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 89/330 (26%), Positives = 148/330 (44%), Gaps = 46/330 (13%)
Query: 44 PTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEM 103
P L L + + ++ + G L AR LFD++P D +W ++I E I + +
Sbjct: 10 PPHLAL-KFIKVYSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDF 68
Query: 104 MKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFY 162
H V P +++ V KAC ++ K+VH + G ++ L +LI+ Y
Sbjct: 69 R-----HKNCVEPDKLLLLSVAKACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMY 123
Query: 163 GKFRCLEDADFVFSQLKRHNTVVWT--AKIVNNCREGHFHQVFNDFKEMGRERIKKNSYT 220
GK RC E A VF + + + WT A NC G + F++MG + NS T
Sbjct: 124 GKCRCSEGARLVFEGMPFRDVISWTSMASCYVNC--GLLREALGAFRKMGLNGERPNSVT 181
Query: 221 FSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELI 280
SS+L AC + D GR++H +V+ G+ + +V LV+MY C +R A+ VF+ +
Sbjct: 182 VSSILPACTDLKDL-KSGREVHGFVVRNGMGGNVFVSSALVNMYASCLSIRQAQLVFDSM 240
Query: 281 VDKK----------------------------------NIASWNAMLVGYIRNGLYVEAT 306
+ N ASWNA++ G ++NG +A
Sbjct: 241 SRRDTVSWNVLITAYFLNKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTEKAL 300
Query: 307 KFLYLMKASGIQIQESLINDLRIACSSISA 336
+ L M+ SG + + I + AC+++ +
Sbjct: 301 EVLSRMQNSGFKPNQITITSVLPACTNLES 330
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 80/322 (24%), Positives = 128/322 (39%), Gaps = 42/322 (13%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
+L N L+ M+ C + AR +F+ MP RD SW M YV+ +E + F
Sbjct: 113 VLLGNALIDMYGKCRCSEGARLVFEGMPFRDVISWTSMASCYVNCGLLREALGAF----- 167
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
RK G + + +L AC +++ G++VHG + + G N+ ++ +L+N Y
Sbjct: 168 RKMGLNGERPNSVTVSSILPACTDLKDLKSGREVHGFVVRNGMGGNVFVSSALVNMYASC 227
Query: 166 RCLEDADFVFSQLKRHNTVVWTA----------------------------------KIV 191
+ A VF + R +TV W ++
Sbjct: 228 LSIRQAQLVFDSMSRRDTVSWNVLITAYFLNKECEKGLSVFGRMMSEGVGLNYASWNAVI 287
Query: 192 NNC-REGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGL 250
C + G + M K N T +SVL AC ++ G+Q+H I +
Sbjct: 288 GGCMQNGRTEKALEVLSRMQNSGFKPNQITITSVLPACTNLESL-RGGKQIHGYIFRHWF 346
Query: 251 ESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLY 310
D LV MY KC L + RVF ++ K++ SWN M++ +G EA
Sbjct: 347 FQDLTTTTALVFMYAKCGDLELSRRVFSMMT-KRDTVSWNTMIIATSMHGNGEEALLLFR 405
Query: 311 LMKASGIQIQESLINDLRIACS 332
M SG++ + CS
Sbjct: 406 EMVDSGVRPNSVTFTGVLSGCS 427
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 76/327 (23%), Positives = 131/327 (40%), Gaps = 61/327 (18%)
Query: 14 TCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMP 73
+ ++ CT KD E+ + R + + + L+ M+ SC + A+ +FD M
Sbjct: 183 SSILPACTDLKDLKSGREVHGFV-VRNGMGGNVFVSSALVNMYASCLSIRQAQLVFDSMS 241
Query: 74 LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAW--------------- 118
RD SW V+I Y + ++ +++F MM G L + +W
Sbjct: 242 RRDTVSWNVLITAYFLNKECEKGLSVFGRMMSEGVG---LNYASWNAVIGGCMQNGRTEK 298
Query: 119 ------------------IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLIN 160
I VL AC ++ GKQ+HG +F+ ++++ T +L+
Sbjct: 299 ALEVLSRMQNSGFKPNQITITSVLPACTNLESLRGGKQIHGYIFRHWFFQDLTTTTALVF 358
Query: 161 FYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYT 220
Y K LE + VFS + + +TV W I+ G+ + F+EM ++ NS T
Sbjct: 359 MYAKCGDLELSRRVFSMMTKRDTVSWNTMIIATSMHGNGEEALLLFREMVDSGVRPNSVT 418
Query: 221 FSSVLKACGGVDDDGNCGRQMHANIVKIGL------------ESDEYVQCGLVDMYGKCR 268
F+ VL C H+ +V GL E D +VD+ +
Sbjct: 419 FTGVLSGCS------------HSRLVDEGLLIFDSMSRDHSVEPDADHHSCMVDVLSRAG 466
Query: 269 LLRDAERVFELIVDKKNIASWNAMLVG 295
L +A + + + +W A+L G
Sbjct: 467 RLEEAYEFIKKMPIEPTAGAWGALLGG 493
>gi|302804119|ref|XP_002983812.1| hypothetical protein SELMODRAFT_299 [Selaginella moellendorffii]
gi|300148649|gb|EFJ15308.1| hypothetical protein SELMODRAFT_299 [Selaginella moellendorffii]
Length = 911
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 80/285 (28%), Positives = 136/285 (47%), Gaps = 15/285 (5%)
Query: 36 IRKRVNIKPTLLFLNRLLL-MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQ 94
+R + T +F+ L++ + CG LD AR F+ + L++ +W M+ D ++Q
Sbjct: 24 LRGSPGLLETNVFIGNLIVGAYRKCGSLDEARAAFESLKLKNVITWNAMLATLADHGEFQ 83
Query: 95 ECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISL 154
+ F+ M+ ++ F + VL AC + G +VH L +LG ++ +
Sbjct: 84 ATLHAFSRMLHEGTVPSVVTF-----ISVLGACA---DWSSGNRVHSLATELGFHTDLVV 135
Query: 155 TGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERI 214
L+NFYGK L A VFS + +T WT+ N GHF + + F+ M + +
Sbjct: 136 GNVLVNFYGKCGDLPQAKMVFSGISYKSTASWTSMAAANAENGHFFEALHLFRGMLLDGL 195
Query: 215 KKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGL-ESDEYVQCGLVDMYGKCRLLRDA 273
+ N +F + L AC + + ++H + + GL SD + LV YGK + A
Sbjct: 196 RHNIPSFLTALHACCSLRE----ADEIHRQVCESGLVSSDVSIGNALVKTYGKLGEVERA 251
Query: 274 ERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
VFE + ++++SWNA++ Y +NG EA F M G+
Sbjct: 252 MEVFETMA-VRDLSSWNAVVASYAQNGCSEEAIAFFCRMLLEGVS 295
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 112/248 (45%), Gaps = 18/248 (7%)
Query: 79 SWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI-IVCVLKACVCTMNMELGK 137
+W MI G VD ++E + M R +G V P + +L AC +N + GK
Sbjct: 569 AWTSMITGLVDKGLHEEALKFLPVM--RVEG----VRPDGVAFAAMLGACAGALNSDQGK 622
Query: 138 QVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN---------TVVWTA 188
++H + + G + ++ SL+ Y + L A + + +++ + V W
Sbjct: 623 KIHSQVLESGLESDSAVASSLVAMYARCGNLVTAYKMLTSIEQEHRLEDHRKVLVVSWNN 682
Query: 189 KIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKI 248
I + G F+ M E I N +F +VL AC ++ G +H+ +
Sbjct: 683 FIGACIQHGQHATAVTMFRRMLLEGITPNKVSFITVLAACR-MESTSRVGHLVHSACREC 741
Query: 249 GLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKF 308
GL D +V+ L DMYGK L A ++ V K++ SWN+++ + ++G EA F
Sbjct: 742 GLFEDAFVKTSLGDMYGKLGNLATARQILR-AVPVKSLVSWNSLVSAFAQHGRGEEAVVF 800
Query: 309 LYLMKASG 316
L+ ++ G
Sbjct: 801 LWELQQDG 808
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 61/271 (22%), Positives = 122/271 (45%), Gaps = 20/271 (7%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ + G+++ A ++F+ M +RD +SW ++ Y +E I F M+
Sbjct: 236 NALVKTYGKLGEVERAMEVFETMAVRDLSSWNAVVASYAQNGCSEEAIAFFCRMLLEGVS 295
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
F ++ C + V G + + G +++++ +LI FY + R +E
Sbjct: 296 PNGNSFAGGVLSC-------DCGEKFSSLVRGCVEEGGFDADVAVSNALITFYSRSREVE 348
Query: 170 DADFVFSQLKRHNTVVW----TAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
A VF +L R N + W +A + N+C + F++M + + +T +S+L
Sbjct: 349 KASEVFLRLDRPNLLSWNSIISACVQNDCAD----SAVLLFRKMQLQGFAADKFTLTSLL 404
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
AC + G + +K+ L+ D + +++M+ KC A +F+ + + N
Sbjct: 405 DACRCL-SLGTKILEWTNTELKLQLQHDSLLGIAMLNMFAKCGCPARAREIFDDTITRTN 463
Query: 286 ----IASWNAMLVGYIRNGLYVEATKFLYLM 312
+ WN ++ Y+ NG + EA + +M
Sbjct: 464 SSFDVVLWNELIRSYVDNGCFDEAMQSFRMM 494
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 72/303 (23%), Positives = 125/303 (41%), Gaps = 23/303 (7%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNS-----WAVMIVGYVDVADYQECITLFAEMMKR 106
+L M CG AR++FD+ R +S W +I YVD + E + F M+
Sbjct: 438 MLNMFAKCGCPARAREIFDDTITRTNSSFDVVLWNELIRSYVDNGCFDEAMQSFRMMLLE 497
Query: 107 KKGHMLLVFPAWIIVC-VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
P + + VL AC + V L+ + G + ++ +L++ +
Sbjct: 498 AAAS-----PNSVTLSRVLAAC---EDEPCRAMVESLVMESGWGSDAQVSNALVSMLARS 549
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
+E A K +N V WT+ I +G + M E ++ + F+++L
Sbjct: 550 GFVEQALERVILHKHNNVVAWTSMITGLVDKGLHEEALKFLPVMRVEGVRPDGVAFAAML 609
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
AC G + G+++H+ +++ GLESD V LV MY +C L A ++ I +
Sbjct: 610 GACAGALNSDQ-GKKIHSQVLESGLESDSAVASSLVAMYARCGNLVTAYKMLTSIEQEHR 668
Query: 286 --------IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISAS 337
+ SWN + I++G + A M GI + + AC S S
Sbjct: 669 LEDHRKVLVVSWNNFIGACIQHGQHATAVTMFRRMLLEGITPNKVSFITVLAACRMESTS 728
Query: 338 KIN 340
++
Sbjct: 729 RVG 731
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 70/298 (23%), Positives = 127/298 (42%), Gaps = 27/298 (9%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L+ N L+ + CG L A+ +F + + SW M + + E + LF M+
Sbjct: 133 LVVGNVLVNFYGKCGDLPQAKMVFSGISYKSTASWTSMAAANAENGHFFEALHLFRGMLL 192
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNM--ELGKQV--HGLLFKLGSSRNISLTGSLINF 161
H + F + L AC C++ E+ +QV GL+ S ++S+ +L+
Sbjct: 193 DGLRHNIPSF-----LTALHAC-CSLREADEIHRQVCESGLV-----SSDVSIGNALVKT 241
Query: 162 YGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTF 221
YGK +E A VF + + W A + + + G + F M E + N +F
Sbjct: 242 YGKLGEVERAMEVFETMAVRDLSSWNAVVASYAQNGCSEEAIAFFCRMLLEGVSPNGNSF 301
Query: 222 SSVLKACGGVDDDGNCGRQ----MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVF 277
+ + +C +CG + + + + G ++D V L+ Y + R + A VF
Sbjct: 302 AGGVLSC-------DCGEKFSSLVRGCVEEGGFDADVAVSNALITFYSRSREVEKASEVF 354
Query: 278 ELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
L +D+ N+ SWN+++ ++N A M+ G + + L AC +S
Sbjct: 355 -LRLDRPNLLSWNSIISACVQNDCADSAVLLFRKMQLQGFAADKFTLTSLLDACRCLS 411
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 75/283 (26%), Positives = 125/283 (44%), Gaps = 32/283 (11%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYV--DVADYQECITLFAEMMKRK 107
N L+ + +++ A ++F + + SW +I V D AD + LF +M
Sbjct: 335 NALITFYSRSREVEKASEVFLRLDRPNLLSWNSIISACVQNDCAD--SAVLLFRKMQ--- 389
Query: 108 KGHMLLVFPA--WIIVCVLKACVCTMNMELGKQV---HGLLFKLGSSRNISLTGSLINFY 162
L F A + + +L AC C + LG ++ KL + L +++N +
Sbjct: 390 ----LQGFAADKFTLTSLLDACRC---LSLGTKILEWTNTELKLQLQHDSLLGIAMLNMF 442
Query: 163 GKFRCLEDADFVFSQ-LKRHNT----VVWTAKIVNNCREGHFHQVFNDFKEMGRERI-KK 216
K C A +F + R N+ V+W I + G F + F+ M E
Sbjct: 443 AKCGCPARAREIFDDTITRTNSSFDVVLWNELIRSYVDNGCFDEAMQSFRMMLLEAAASP 502
Query: 217 NSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDA-ER 275
NS T S VL AC +D C + + +++ G SD V LV M + + A ER
Sbjct: 503 NSVTLSRVLAAC----EDEPCRAMVESLVMESGWGSDAQVSNALVSMLARSGFVEQALER 558
Query: 276 VFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
V ++ N+ +W +M+ G + GL+ EA KFL +M+ G++
Sbjct: 559 V--ILHKHNNVVAWTSMITGLVDKGLHEEALKFLPVMRVEGVR 599
Score = 45.1 bits (105), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 58/267 (21%), Positives = 103/267 (38%), Gaps = 31/267 (11%)
Query: 50 NRLLLMHVSCGQLDTARQLF----DEMPLRDFN-----SWAVMIVGYVDVADYQECITLF 100
+ L+ M+ CG L TA ++ E L D SW I + + +T+F
Sbjct: 641 SSLVAMYARCGNLVTAYKMLTSIEQEHRLEDHRKVLVVSWNNFIGACIQHGQHATAVTMF 700
Query: 101 AEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLIN 160
M+ + F + VL AC +G VH + G + + SL +
Sbjct: 701 RRMLLEGITPNKVSF-----ITVLAACRMESTSRVGHLVHSACRECGLFEDAFVKTSLGD 755
Query: 161 FYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYT 220
YGK L A + + + V W + + + G + E+ ++ K N+ T
Sbjct: 756 MYGKLGNLATARQILRAVPVKSLVSWNSLVSAFAQHGRGEEAVVFLWELQQDGSKPNATT 815
Query: 221 FSSVLKACGGVDDDGNCG-------RQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDA 273
F+S++ NC R + + + GL G+V++ G+ L +A
Sbjct: 816 FASII----------NCSVEATEVYRWIESMLCDHGLVPGVEHLRGVVEILGRQGKLGEA 865
Query: 274 ERVFELIVDKKNIASWNAMLVGYIRNG 300
ER+ + + A W ++L R+G
Sbjct: 866 ERIISKMAMEFRGAMWLSLLGWCRRHG 892
>gi|410109979|gb|AFV61069.1| pentatricopeptide repeat-containing protein 81, partial [Junellia
succulentifolia]
Length = 406
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 90/351 (25%), Positives = 164/351 (46%), Gaps = 25/351 (7%)
Query: 1 MDNL--CLPI--TTDMYTCLIKECTFQK-----DSAGAFELLNHIRKRV---NIKPTLLF 48
MDNL C+ + DM + + TF A ++E+ + ++ ++
Sbjct: 37 MDNLQRCIELFMYMDMEGVRVDDATFAPLLSLLYEAESYEVTKQLHGKIMKRGLEHENTV 96
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMP-LRDFNSWAVMIVGYVDVADYQEC-ITLFAEMMKR 106
+N + + CG + A+++FD RD +W M+ Y++ + +EC +F EM+++
Sbjct: 97 INATITAYAECGCIQDAKRVFDNADGYRDLVTWNSMLAAYLE-HNLEECGFNIFLEMVRQ 155
Query: 107 KKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF- 165
+ L A+ + ++ AC LGK +HGL+ K G ++ +LI+ Y K
Sbjct: 156 R-----LEVDAYTLSSIISACFGDSQQSLGKSLHGLVIKKGLEHVTQISNALISMYLKSN 210
Query: 166 --RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSS 223
+ +EDA +F ++ + V W + + G F+ + + + + YTF++
Sbjct: 211 SQKNVEDALKIFEHIEVKDLVSWNTILTGLSQNGLSESALKLFQHIHLDHLVIDQYTFAA 270
Query: 224 VLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
VL++C + GRQ+H +VK G E +EYV L+ MY KC ++ DA FE K
Sbjct: 271 VLRSCSDLAT-LQLGRQIHVLVVKSGFEGNEYVCSALIFMYSKCGIIEDARESFE-SSPK 328
Query: 284 KNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
+ +WN+++ Y ++G A + Y M I++ ACS I
Sbjct: 329 NSSVTWNSIIFAYAQHGQGKIALELFYSMTERNIKLDHVTFVAALTACSHI 379
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 80/286 (27%), Positives = 138/286 (48%), Gaps = 13/286 (4%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEM-MKRKKGHMLL 113
M+ C +++ A ++F M R+ SW +I GY ++ + Q CI LF M M+ +
Sbjct: 2 MYAKCKRVEDADKVFKYMQERNTVSWNALIGGYAEMDNLQRCIELFMYMDMEGVRVDDAT 61
Query: 114 VFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADF 173
P +L + E+ KQ+HG + K G ++ + I Y + C++DA
Sbjct: 62 FAP------LLSLLYEAESYEVTKQLHGKIMKRGLEHENTVINATITAYAECGCIQDAKR 115
Query: 174 VFSQLKRH-NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVD 232
VF + + V W + + FN F EM R+R++ ++YT SS++ AC G D
Sbjct: 116 VFDNADGYRDLVTWNSMLAAYLEHNLEECGFNIFLEMVRQRLEVDAYTLSSIISACFG-D 174
Query: 233 DDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKC---RLLRDAERVFELIVDKKNIASW 289
+ G+ +H ++K GLE + L+ MY K + + DA ++FE I + K++ SW
Sbjct: 175 SQQSLGKSLHGLVIKKGLEHVTQISNALISMYLKSNSQKNVEDALKIFEHI-EVKDLVSW 233
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
N +L G +NGL A K + + I + + +CS ++
Sbjct: 234 NTILTGLSQNGLSESALKLFQHIHLDHLVIDQYTFAAVLRSCSDLA 279
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 71/142 (50%), Gaps = 1/142 (0%)
Query: 160 NFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSY 219
+ Y K + +EDAD VF ++ NTV W A I + + F M E ++ +
Sbjct: 1 DMYAKCKRVEDADKVFKYMQERNTVSWNALIGGYAEMDNLQRCIELFMYMDMEGVRVDDA 60
Query: 220 TFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFEL 279
TF+ +L + +Q+H I+K GLE + V + Y +C ++DA+RVF+
Sbjct: 61 TFAPLLSLLYEAES-YEVTKQLHGKIMKRGLEHENTVINATITAYAECGCIQDAKRVFDN 119
Query: 280 IVDKKNIASWNAMLVGYIRNGL 301
+++ +WN+ML Y+ + L
Sbjct: 120 ADGYRDLVTWNSMLAAYLEHNL 141
>gi|302810986|ref|XP_002987183.1| hypothetical protein SELMODRAFT_21339 [Selaginella moellendorffii]
gi|300145080|gb|EFJ11759.1| hypothetical protein SELMODRAFT_21339 [Selaginella moellendorffii]
Length = 475
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 81/299 (27%), Positives = 134/299 (44%), Gaps = 7/299 (2%)
Query: 35 HIRKRVNIKPT-LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADY 93
H R R + L+ L+ M+ SCG + AR++F + RD S + M+
Sbjct: 103 HARLRSGGHESNLVVATALINMYSSCGSIAEAREVFSKTNSRDVVSMSSMVAALAGSGHG 162
Query: 94 QECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNIS 153
E I LF M + F A ++ C C C ++ LGKQ+H + G N+
Sbjct: 163 GEAILLFRRMDLEGIASNEITFVAALVAC----CDCPGSLALGKQIHERIIAGGLGSNVF 218
Query: 154 LTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRER 213
L SL+ YG+ + +A+ VF + R + W + + + GH + M E
Sbjct: 219 LANSLVTMYGRSSEVAEAEAVFRSILRRSLTSWNSMLAAYAQNGHSSVALDVHVRMDHEG 278
Query: 214 IKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDA 273
+ + +TF ++L AC + GRQ+H +GL ++ +V L+DMYGK L +A
Sbjct: 279 VASDEFTFVTLLDACA-MAGTLQLGRQIHDRTDAMGLMTNGFVATALLDMYGKRGSLGEA 337
Query: 274 ERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
VF+ ++ +W AM+ Y ++G EA + M G+ ++ ACS
Sbjct: 338 RAVFDRHC-TGSVVAWTAMIASYAQHGRSAEALELYGGMALEGLAPNSVTFVNILSACS 395
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 80/283 (28%), Positives = 127/283 (44%), Gaps = 6/283 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ + CG LD+A +F + R+ SW +MIV V D + L EM
Sbjct: 18 NNLVEAYGRCGDLDSATAVFLTIQDRNVYSWTIMIVASVQNGDGVLALRLLREMDCEGVA 77
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ F + +L A ++ G+++H L G N+ + +LIN Y +
Sbjct: 78 PDEMTFSS-----ILGALSGKRDLRQGREIHARLRSGGHESNLVVATALINMYSSCGSIA 132
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
+A VFS+ + V ++ + GH + F+ M E I N TF + L AC
Sbjct: 133 EAREVFSKTNSRDVVSMSSMVAALAGSGHGGEAILLFRRMDLEGIASNEITFVAALVACC 192
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
G+Q+H I+ GL S+ ++ LV MYG+ + +AE VF I+ ++++ SW
Sbjct: 193 DCPGSLALGKQIHERIIAGGLGSNVFLANSLVTMYGRSSEVAEAEAVFRSIL-RRSLTSW 251
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
N+ML Y +NG A M G+ E L AC+
Sbjct: 252 NSMLAAYAQNGHSSVALDVHVRMDHEGVASDEFTFVTLLDACA 294
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 90/216 (41%), Gaps = 10/216 (4%)
Query: 25 DSAGAFELLNHIRKRV---NIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWA 81
D G+ L I +R+ + + N L+ M+ ++ A +F + R SW
Sbjct: 193 DCPGSLALGKQIHERIIAGGLGSNVFLANSLVTMYGRSSEVAEAEAVFRSILRRSLTSWN 252
Query: 82 VMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHG 141
M+ Y + + M H + + V +L AC ++LG+Q+H
Sbjct: 253 SMLAAYAQNGHSSVALDVHVRM-----DHEGVASDEFTFVTLLDACAMAGTLQLGRQIHD 307
Query: 142 LLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQ 201
+G N + +L++ YGK L +A VF + + V WTA I + + G +
Sbjct: 308 RTDAMGLMTNGFVATALLDMYGKRGSLGEARAVFDRHCTGSVVAWTAMIASYAQHGRSAE 367
Query: 202 VFNDFKEMGRERIKKNSYTFSSVLKACG--GVDDDG 235
+ M E + NS TF ++L AC G+ D G
Sbjct: 368 ALELYGGMALEGLAPNSVTFVNILSACSYYGMVDQG 403
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 86/193 (44%), Gaps = 2/193 (1%)
Query: 139 VHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGH 198
+H + G R+ L +L+ YG+ L+ A VF ++ N WT IV + + G
Sbjct: 1 IHARMVSSGIHRDRFLCNNLVEAYGRCGDLDSATAVFLTIQDRNVYSWTIMIVASVQNGD 60
Query: 199 FHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQC 258
+EM E + + TFSS+L A G D GR++HA + G ES+ V
Sbjct: 61 GVLALRLLREMDCEGVAPDEMTFSSILGALSG-KRDLRQGREIHARLRSGGHESNLVVAT 119
Query: 259 GLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
L++MY C + +A VF + +++ S ++M+ +G EA M GI
Sbjct: 120 ALINMYSSCGSIAEAREVFS-KTNSRDVVSMSSMVAALAGSGHGGEAILLFRRMDLEGIA 178
Query: 319 IQESLINDLRIAC 331
E +AC
Sbjct: 179 SNEITFVAALVAC 191
>gi|334187432|ref|NP_196098.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635619|sp|Q9LZ19.2|PP364_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g04780
gi|332003400|gb|AED90783.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 635
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 83/293 (28%), Positives = 142/293 (48%), Gaps = 7/293 (2%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R++++ + LN L+ + CG ++ ARQ+FD M R SW MI Y E +
Sbjct: 89 RIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALD 148
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
+F EM R +G F + I VL AC + K++H L K N+ + +L
Sbjct: 149 IFLEM--RNEG---FKFSEFTISSVLSACGVNCDALECKKLHCLSVKTCIDLNLYVGTAL 203
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
++ Y K ++DA VF ++ ++V W++ + + ++ + ++ R +++N
Sbjct: 204 LDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQ 263
Query: 219 YTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE 278
+T SSV+ AC + G+QMHA I K G S+ +V VDMY KC LR++ +F
Sbjct: 264 FTLSSVICACSNLAALIE-GKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFS 322
Query: 279 LIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
V +KN+ WN ++ G+ ++ E M+ G+ E + L C
Sbjct: 323 E-VQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVC 374
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 110/214 (51%), Gaps = 2/214 (0%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
+L+ C + K HG + ++ +++L LIN Y K +E A VF + +
Sbjct: 67 ILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERS 126
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
V W I R + + F EM E K + +T SSVL ACG D C +++H
Sbjct: 127 LVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALEC-KKLH 185
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
VK ++ + YV L+D+Y KC +++DA +VFE + DK ++ +W++M+ GY++N Y
Sbjct: 186 CLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSV-TWSSMVAGYVQNKNY 244
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
EA + ++ + ++ + ACS+++A
Sbjct: 245 EEALLLYRRAQRMSLEQNQFTLSSVICACSNLAA 278
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 116/246 (47%), Gaps = 9/246 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL ++ CG + A Q+F+ M + +W+ M+ GYV +Y+E + L+ R+ M
Sbjct: 203 LLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALLLY-----RRAQRM 257
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
L + + V+ AC + GKQ+H ++ K G N+ + S ++ Y K L ++
Sbjct: 258 SLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRES 317
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG-- 229
+FS+++ N +W I + +V F++M ++ + N TFSS+L CG
Sbjct: 318 YIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHT 377
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
G+ ++G R GL + +VD+ G+ LL +A + + I + W
Sbjct: 378 GLVEEGR--RFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFDPTASIW 435
Query: 290 NAMLVG 295
++L
Sbjct: 436 GSLLAS 441
>gi|297819542|ref|XP_002877654.1| hypothetical protein ARALYDRAFT_323502 [Arabidopsis lyrata subsp.
lyrata]
gi|297323492|gb|EFH53913.1| hypothetical protein ARALYDRAFT_323502 [Arabidopsis lyrata subsp.
lyrata]
Length = 1112
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 89/290 (30%), Positives = 143/290 (49%), Gaps = 16/290 (5%)
Query: 52 LLLMHVSC---GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADY-QECITLFAEMMKRK 107
L+ M+ C G +D R++FD M SW +I GY+ + E I LF+EM+
Sbjct: 308 LVDMYAKCSADGSVDDCRKVFDRMQDHSVMSWTALITGYMQNCNLATEAINLFSEMIT-- 365
Query: 108 KGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166
+GH V P + KAC + +GKQV G FK G + N S++ S+I+ + K
Sbjct: 366 QGH---VEPNHFTFSSAFKACGNVSDPRVGKQVLGHAFKRGLASNSSVSNSVISMFVKCD 422
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
+EDA F L N V + + CR F F E+ + +++TF+S+L
Sbjct: 423 RMEDARTAFESLSEKNLVSYNTFLDGTCRNLDFEHAFELLSEIAERELGVSAFTFASLLS 482
Query: 227 ACGGVDDDGNC--GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
GV + G+ G Q+H+ ++K+GL ++ V L+ MY KC + A RVF L+ D +
Sbjct: 483 ---GVANVGSLRKGEQIHSQVLKLGLSCNQPVCNALISMYSKCGSIDTASRVFSLM-DNR 538
Query: 285 NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
N+ SW +M+ G+ ++G + M G++ E + ACS +
Sbjct: 539 NVISWTSMITGFAKHGFAERVLETFNQMTKEGVKPNEVTYVAILSACSHV 588
Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 93/346 (26%), Positives = 163/346 (47%), Gaps = 26/346 (7%)
Query: 7 PITTDMYTCLIKECTFQKDSAGAFELLNHIRKRV---NIKPTLLFLNRLLLMHVSCGQLD 63
P+ + ++ L+K C A F L + R+ I+P + N L+ ++ G L
Sbjct: 59 PMDSVTFSSLLKSCI----RARHFRLGKLVHARLIEFEIEPDSVLYNSLISLYSKSGDLT 114
Query: 64 TARQLFDEMPL---RDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWII 120
A+ +F+ M RD SW+ M+ + + + I LF E ++ M LV +
Sbjct: 115 KAKDVFETMGRFGKRDVVSWSAMMACFGNNGREFDAIKLFVEFLE-----MGLVPNDYCY 169
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLGS-SRNISLTGSLINFYGKFR-CLEDADFVFSQL 178
V++AC + + +G+ + G L K G ++ + SLI+ + K E+A VF ++
Sbjct: 170 TAVIRACSNSDFVGVGRVILGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKM 229
Query: 179 KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCG 238
N V WT I + G + F +M + + +T SSV AC + ++ + G
Sbjct: 230 SELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAEL-ENLSLG 288
Query: 239 RQMHANIVKIGLESDEYVQCGLVDMYGKCRL---LRDAERVFELIVDKKNIASWNAMLVG 295
RQ+H+ ++ GL D V+C LVDMY KC + D +VF+ + D ++ SW A++ G
Sbjct: 289 RQLHSWAIRSGLADD--VECSLVDMYAKCSADGSVDDCRKVFDRMQD-HSVMSWTALITG 345
Query: 296 YIRN-GLYVEATKFLYLMKASG-IQIQESLINDLRIACSSISASKI 339
Y++N L EA M G ++ + AC ++S ++
Sbjct: 346 YMQNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNVSDPRV 391
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 66/282 (23%), Positives = 123/282 (43%), Gaps = 8/282 (2%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
++ K C D ++L H KR + N ++ M V C +++ AR F+ +
Sbjct: 376 FSSAFKACGNVSDPRVGKQVLGHAFKR-GLASNSSVSNSVISMFVKCDRMEDARTAFESL 434
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN 132
++ S+ + G D++ L +E+ +R+ G A+ +L +
Sbjct: 435 SEKNLVSYNTFLDGTCRNLDFEHAFELLSEIAERELG-----VSAFTFASLLSGVANVGS 489
Query: 133 MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192
+ G+Q+H + KLG S N + +LI+ Y K ++ A VFS + N + WT+ I
Sbjct: 490 LRKGEQIHSQVLKLGLSCNQPVCNALISMYSKCGSIDTASRVFSLMDNRNVISWTSMITG 549
Query: 193 NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLES 252
+ G +V F +M +E +K N T+ ++L AC V R ++ ++
Sbjct: 550 FAKHGFAERVLETFNQMTKEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKP 609
Query: 253 D-EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
E+ C +VD+ + LL DA + + ++ W L
Sbjct: 610 KMEHYAC-MVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFL 650
>gi|357143522|ref|XP_003572950.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Brachypodium distachyon]
Length = 874
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 78/271 (28%), Positives = 128/271 (47%), Gaps = 8/271 (2%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M++ CG ++ R +F+ MP R+ +W ++ GYV + + LF M R +G
Sbjct: 141 LVDMYMKCGGVEDGRVVFEGMPKRNVVTWTSLLTGYVQGRACSDVMALFFRM--RAEG-- 196
Query: 112 LLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
V+P + VL A ++LG++VH K G + + SLIN Y K +E+
Sbjct: 197 --VWPNPFTFTSVLSAVASQGAVDLGRRVHAQSVKFGCRSTVFVCNSLINMYSKCGLVEE 254
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
A VF Q++ + V W + H + F + K + T+S+V+K C
Sbjct: 255 AKAVFRQMETRDMVSWNTLMAGLLLNEHQLEALQLFHDSRASMAKLSQSTYSTVIKLCAN 314
Query: 231 VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWN 290
+ RQ+H+ ++K G SD V ++D Y KC L DA +F L+ +N+ SW
Sbjct: 315 LKQLA-LARQLHSCVLKHGFHSDGNVMTAIMDAYSKCGELDDAFNIFLLMPGSQNVVSWT 373
Query: 291 AMLVGYIRNGLYVEATKFLYLMKASGIQIQE 321
AM+ G I+N A M+ ++ E
Sbjct: 374 AMIGGCIQNADIPLAAALFSRMREDNVKPNE 404
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 86/327 (26%), Positives = 142/327 (43%), Gaps = 14/327 (4%)
Query: 8 ITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQ 67
++ Y+ +IK C K A A +L + + K + ++ + CG+LD A
Sbjct: 300 LSQSTYSTVIKLCANLKQLALARQLHSCVLKH-GFHSDGNVMTAIMDAYSKCGELDDAFN 358
Query: 68 LFDEMP-LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCVLK 125
+F MP ++ SW MI G + AD LF+ M + V P + VL
Sbjct: 359 IFLLMPGSQNVVSWTAMIGGCIQNADIPLAAALFSRMREDN------VKPNEFTYSTVLT 412
Query: 126 ACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVV 185
A + L Q+H + K S+ +L+ Y K E+A +F + + V
Sbjct: 413 ASIPI----LLPQIHAQIIKTNYQHAPSVGTALLASYSKLGNTEEALSIFKMIDHKDVVA 468
Query: 186 WTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANI 245
W+A + + G N F +M + +K N +T SS + AC + GRQ HA
Sbjct: 469 WSAMLSCYSQAGDCDGATNVFIKMSMQGMKPNEFTISSAIDACASPTAGIDQGRQFHAIS 528
Query: 246 VKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEA 305
+K + V LV MY + + A VFE D +++ SWN+M+ GY ++G EA
Sbjct: 529 IKYRYQDAICVGSALVTMYARKGSIDSARIVFERQTD-RDLVSWNSMISGYAQHGYSKEA 587
Query: 306 TKFLYLMKASGIQIQESLINDLRIACS 332
M+ GI++ + + + C+
Sbjct: 588 LDTFRQMETVGIEMDGATFLAVIVGCT 614
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/281 (29%), Positives = 135/281 (48%), Gaps = 24/281 (8%)
Query: 65 ARQLFDEMPLRDF----NSWAVMIVGYVDVADYQ-ECITLFAEMMK--RKKGHMLLVFPA 117
ARQ D MP RD +S V IV Y + E + F ++ + R +G
Sbjct: 48 ARQALDGMPSRDAAAGSSSNPVAIVDYGRRGKGRGEALDHFVDVHRCGRVQGAA------ 101
Query: 118 WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSR-NISLTGSLINFYGKFRCLEDADFVFS 176
+ VLK C + G+Q+H L K G R + + +L++ Y K +ED VF
Sbjct: 102 --VSRVLKVCGLIPDRVSGEQLHCLCVKCGFDRAEVGVGTALVDMYMKCGGVEDGRVVFE 159
Query: 177 QLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC---GGVDD 233
+ + N V WT+ + + V F M E + N +TF+SVL A G VD
Sbjct: 160 GMPKRNVVTWTSLLTGYVQGRACSDVMALFFRMRAEGVWPNPFTFTSVLSAVASQGAVD- 218
Query: 234 DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
GR++HA VK G S +V L++MY KC L+ +A+ VF + + +++ SWN ++
Sbjct: 219 ---LGRRVHAQSVKFGCRSTVFVCNSLINMYSKCGLVEEAKAVFRQM-ETRDMVSWNTLM 274
Query: 294 VGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
G + N +EA + + +AS ++ +S + + C+++
Sbjct: 275 AGLLLNEHQLEALQLFHDSRASMAKLSQSTYSTVIKLCANL 315
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 83/319 (26%), Positives = 140/319 (43%), Gaps = 23/319 (7%)
Query: 26 SAGAFELLNHIRK---RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAV 82
S GA +L + + + T+ N L+ M+ CG ++ A+ +F +M RD SW
Sbjct: 213 SQGAVDLGRRVHAQSVKFGCRSTVFVCNSLINMYSKCGLVEEAKAVFRQMETRDMVSWNT 272
Query: 83 MIVGYVDVADYQECITLF----AEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQ 138
++ G + E + LF A M K + V+K C + L +Q
Sbjct: 273 LMAGLLLNEHQLEALQLFHDSRASMAKLSQS---------TYSTVIKLCANLKQLALARQ 323
Query: 139 VHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK-RHNTVVWTAKIVNNCREG 197
+H + K G + ++ ++++ Y K L+DA +F + N V WTA I +
Sbjct: 324 LHSCVLKHGFHSDGNVMTAIMDAYSKCGELDDAFNIFLLMPGSQNVVSWTAMIGGCIQNA 383
Query: 198 HFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQ 257
F M + +K N +T+S+VL A + Q+HA I+K + V
Sbjct: 384 DIPLAAALFSRMREDNVKPNEFTYSTVLTASIPI-----LLPQIHAQIIKTNYQHAPSVG 438
Query: 258 CGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGI 317
L+ Y K +A +F++I D K++ +W+AML Y + G AT M G+
Sbjct: 439 TALLASYSKLGNTEEALSIFKMI-DHKDVVAWSAMLSCYSQAGDCDGATNVFIKMSMQGM 497
Query: 318 QIQESLINDLRIACSSISA 336
+ E I+ AC+S +A
Sbjct: 498 KPNEFTISSAIDACASPTA 516
>gi|297818116|ref|XP_002876941.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297322779|gb|EFH53200.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 652
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 73/265 (27%), Positives = 131/265 (49%), Gaps = 9/265 (3%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMP-LRDFNSWAVMIVGYVDVADYQECI 97
++ ++ + N ++ + +CG + A+++FD + +D SW MI G +
Sbjct: 177 KLGLEHEITICNAMISSYANCGLVSDAKRVFDGLGGSKDLISWNSMIAGLSKHEQKESAF 236
Query: 98 TLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGS 157
LF EM + + + ++ AC + GK +HGL+ K G + S++ +
Sbjct: 237 ELFTEMHRN-----WIETDIYTYTGIVSACSGEEHQSFGKSLHGLVIKKGLEQVTSVSNA 291
Query: 158 LINFYGKFRC--LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIK 215
LI+ Y +F ++DA +F LK + V W + + + G F+ + I+
Sbjct: 292 LISMYIQFPTGVMKDALSLFESLKPKDLVSWNSIMTGFSQNGLSEDAVKFFRYLRSSNIE 351
Query: 216 KNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAER 275
+ Y FS+VL++C + G+Q HA K ES+E+V L+ MY KC ++ +A +
Sbjct: 352 VDDYAFSAVLRSCSDLATL-QLGQQTHALATKSSFESNEFVTSSLILMYSKCGVIENARK 410
Query: 276 VFELIVDKKNIASWNAMLVGYIRNG 300
FE I K N +WNAM++GY ++G
Sbjct: 411 CFEQISSKHNTIAWNAMILGYAQHG 435
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/290 (26%), Positives = 141/290 (48%), Gaps = 9/290 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+ L+ M+ C +++ A F E+ + SW +I G+V V D + L M +
Sbjct: 86 SSLVDMYAKCERVEDAFGAFMEILEPNSVSWNALIAGFVQVRDTKTAFWLLGLMEMKAAV 145
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
M A ++ + C L KQVH + KLG I++ ++I+ Y +
Sbjct: 146 TMDDGTFAPLLTLLDDPMFCN----LLKQVHAKVLKLGLEHEITICNAMISSYANCGLVS 201
Query: 170 DADFVFSQLK-RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
DA VF L + + W + I + F F EM R I+ + YT++ ++ AC
Sbjct: 202 DAKRVFDGLGGSKDLISWNSMIAGLSKHEQKESAFELFTEMHRNWIETDIYTYTGIVSAC 261
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGK--CRLLRDAERVFELIVDKKNI 286
G ++ + G+ +H ++K GLE V L+ MY + +++DA +FE + K++
Sbjct: 262 SG-EEHQSFGKSLHGLVIKKGLEQVTSVSNALISMYIQFPTGVMKDALSLFESL-KPKDL 319
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
SWN+++ G+ +NGL +A KF +++S I++ + + + +CS ++
Sbjct: 320 VSWNSIMTGFSQNGLSEDAVKFFRYLRSSNIEVDDYAFSAVLRSCSDLAT 369
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 80/270 (29%), Positives = 128/270 (47%), Gaps = 13/270 (4%)
Query: 67 QLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKA 126
+LFDEMP RD SW MI GY + LF +M KR ++ + +LK
Sbjct: 2 RLFDEMPQRDSVSWNTMISGYTSCGKLENSWCLFTDM-KRCGCYV----DGYSFSRLLKG 56
Query: 127 CVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVW 186
+LG+QVHGL+ K G N+ + SL++ Y K +EDA F ++ N+V W
Sbjct: 57 IASAKRFDLGEQVHGLVVKGGYECNVYVGSSLVDMYAKCERVEDAFGAFMEILEPNSVSW 116
Query: 187 TAKIVN--NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCG--RQMH 242
A I R+ EM + + + TF+ +L +DD C +Q+H
Sbjct: 117 NALIAGFVQVRDTKTAFWLLGLMEM-KAAVTMDDGTFAPLLTL---LDDPMFCNLLKQVH 172
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
A ++K+GLE + + ++ Y C L+ DA+RVF+ + K++ SWN+M+ G ++
Sbjct: 173 AKVLKLGLEHEITICNAMISSYANCGLVSDAKRVFDGLGGSKDLISWNSMIAGLSKHEQK 232
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIACS 332
A + M + I+ + ACS
Sbjct: 233 ESAFELFTEMHRNWIETDIYTYTGIVSACS 262
>gi|302814959|ref|XP_002989162.1| hypothetical protein SELMODRAFT_129336 [Selaginella moellendorffii]
gi|300143062|gb|EFJ09756.1| hypothetical protein SELMODRAFT_129336 [Selaginella moellendorffii]
Length = 674
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 89/297 (29%), Positives = 140/297 (47%), Gaps = 16/297 (5%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L++ + CG ARQ+F EM +D SW MI AD EC+ LF +M+
Sbjct: 188 LIVTYGRCGSSPLARQVFSEMVRKDVVSWTSMI----KAADADECLLLFRQMLLEGVAPN 243
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
L + C L A LG+ VH +LG ++ + SLIN Y K L A
Sbjct: 244 ELTLAEALHSCSL-APDLPATFALGQCVHACARELGYETDVVVGTSLINMYAKCAALPQA 302
Query: 172 DFVFSQL---KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+ +F L R N V WTA I N + G + Q +++M + I N +F + L AC
Sbjct: 303 EAIFHLLATNARTNCVCWTAMITANAKAGEWKQAIRLYRQMQLQGIAPNRVSFIAALSAC 362
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
+ G+ +H+ V+ GLESD V +V MYGKC DA ++F+ + +++ +
Sbjct: 363 STPEFLAT-GKLVHSCTVERGLESDTMVANAVVSMYGKCGSTEDARKMFDGM-KRRDSVT 420
Query: 289 WNAM-----LVGYIRNGLYVEATKFLYL-MKASGIQIQESLINDLRIACSSISASKI 339
W+AM L G + + E L+ M+ G++ + + L CS ++A ++
Sbjct: 421 WSAMLAAIALAGELDSRARNEQALLLFASMQLEGVKPTKVTLVSLLNCCSDLAAGRM 477
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/331 (21%), Positives = 131/331 (39%), Gaps = 26/331 (7%)
Query: 17 IKECTFQKDSAGAFEL---LNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMP 73
+ C+ D F L ++ + + + ++ L+ M+ C L A +F +
Sbjct: 251 LHSCSLAPDLPATFALGQCVHACARELGYETDVVVGTSLINMYAKCAALPQAEAIFHLLA 310
Query: 74 LRDFNS---WAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCT 130
+ W MI ++++ I L+ +M + + F + L AC
Sbjct: 311 TNARTNCVCWTAMITANAKAGEWKQAIRLYRQMQLQGIAPNRVSF-----IAALSACSTP 365
Query: 131 MNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKI 190
+ GK VH + G + + ++++ YGK EDA +F +KR ++V W+A +
Sbjct: 366 EFLATGKLVHSCTVERGLESDTMVANAVVSMYGKCGSTEDARKMFDGMKRRDSVTWSAML 425
Query: 191 VNNCREGHF------HQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHAN 244
G Q F M E +K T S+L C D GR +H+
Sbjct: 426 AAIALAGELDSRARNEQALLLFASMQLEGVKPTKVTLVSLLNCC----SDLAAGRMIHSR 481
Query: 245 IV----KIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
++ G E + + +V+MY +C L A R F ++ SWN M+ ++
Sbjct: 482 VLLDRRPDGGELEVALWNAVVNMYARCGSLDSAAREFH-GAQARDFISWNGMITASAQHS 540
Query: 301 LYVEATKFLYLMKASGIQIQESLINDLRIAC 331
+ +A + M+ G+ E + L AC
Sbjct: 541 RWSDAVAYFQEMQQEGVDPDEVTMVTLLFAC 571
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 82/329 (24%), Positives = 141/329 (42%), Gaps = 21/329 (6%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
+ ++K C + A L +R + + L+ M+ SCG AR++FD +
Sbjct: 49 FGSILKACKDVEAGARIHRFLLQVRHGQILYHDVYVATALVGMYGSCGHSAAAREVFDAI 108
Query: 73 P--LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCT 130
P ++ +W+ M+ V Q+ + LF + + V + + VL C
Sbjct: 109 PSATKNIVTWSAMLGTNASVW-RQQGMELFWSFLNDGSLRVDKV----VFITVLGLC--- 160
Query: 131 MNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKI 190
N+ G H + G + + ++ +LI YG+ A VFS++ R + V WT+ I
Sbjct: 161 SNLTQGCFCHSCALEAGFAADPAVCHALIVTYGRCGSSPLARQVFSEMVRKDVVSWTSMI 220
Query: 191 VNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC---GRQMHANIVK 247
+ + F++M E + N T + L +C D G+ +HA +
Sbjct: 221 ----KAADADECLLLFRQMLLEGVAPNELTLAEALHSCSLAPDLPATFALGQCVHACARE 276
Query: 248 IGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD--KKNIASWNAMLVGYIRNGLYVEA 305
+G E+D V L++MY KC L AE +F L+ + N W AM+ + G + +A
Sbjct: 277 LGYETDVVVGTSLINMYAKCAALPQAEAIFHLLATNARTNCVCWTAMITANAKAGEWKQA 336
Query: 306 TKFLYLMKASGIQIQE-SLINDLRIACSS 333
+ M+ GI S I L ACS+
Sbjct: 337 IRLYRQMQLQGIAPNRVSFIAALS-ACST 364
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 59/117 (50%), Gaps = 9/117 (7%)
Query: 182 NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQM 241
+ V WT+ I + G + Q M +E + NS+TF S+LKAC V+ G ++
Sbjct: 10 DVVSWTSLIWGYSQRGQWDQAMALLGRMQQEGVAPNSFTFGSILKACKDVE----AGARI 65
Query: 242 HANIVKIG----LESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK-KNIASWNAML 293
H ++++ L D YV LV MYG C A VF+ I KNI +W+AML
Sbjct: 66 HRFLLQVRHGQILYHDVYVATALVGMYGSCGHSAAAREVFDAIPSATKNIVTWSAML 122
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 95/228 (41%), Gaps = 23/228 (10%)
Query: 74 LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNM 133
+ D SW +I GY + + + L M + F + +LKAC ++
Sbjct: 8 IPDVVSWTSLIWGYSQRGQWDQAMALLGRMQQEGVAPNSFTFGS-----ILKAC---KDV 59
Query: 134 ELGKQVHGLLFKLGSSR----NISLTGSLINFYGKFRCLEDADFVFSQLKR--HNTVVWT 187
E G ++H L ++ + ++ + +L+ YG A VF + N V W+
Sbjct: 60 EAGARIHRFLLQVRHGQILYHDVYVATALVGMYGSCGHSAAAREVFDAIPSATKNIVTWS 119
Query: 188 AKIVNNCR--EGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANI 245
A + N ++F F G R+ K F +VL C + C H+
Sbjct: 120 AMLGTNASVWRQQGMELFWSFLNDGSLRVDK--VVFITVLGLCSNLTQGCFC----HSCA 173
Query: 246 VKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
++ G +D V L+ YG+C A +VF +V +K++ SW +M+
Sbjct: 174 LEAGFAADPAVCHALIVTYGRCGSSPLARQVFSEMV-RKDVVSWTSMI 220
>gi|255591025|ref|XP_002535423.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223523164|gb|EEF26960.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 563
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 94/311 (30%), Positives = 155/311 (49%), Gaps = 17/311 (5%)
Query: 8 ITTDMYT--CLIKECTFQKDSAGAFELLNHIRKRV---NIKPTLLFLNRLLLMHVSCGQL 62
+ D YT +I C + G FE+ N ++ V L N L+ M+ G L
Sbjct: 29 VKPDTYTFPSVINACA----ALGDFEIGNVVQNHVLEIGFGFDLYIGNALVDMYARFGDL 84
Query: 63 DTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVC 122
AR +F+EM RD SW +I GY + E + ++ E+ R G L + +
Sbjct: 85 VKARNVFEEMTHRDIVSWNSLISGYSANGYWDEALEIYYEL--RIAG---LKPDNFTLSS 139
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
VL AC + ++ G+ +HGL+ KLG + ++ ++ L++ Y KF L DA VF+++ +
Sbjct: 140 VLPACGGLLAVKEGEVIHGLVEKLGMNIDVIMSNGLLSMYFKFGRLMDAQRVFNKMVVKD 199
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
V W I C+ F + F+EM + R + + T +SVL+ACG + D G+ +H
Sbjct: 200 YVSWNTLICGYCQMELFEESIQLFREMVK-RFRPDLLTITSVLRACGLL-RDLEFGKFVH 257
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
I++ G+E D ++D Y KC L + + F+ I + ++ SWN ++ GYI++ Y
Sbjct: 258 DYILRSGIEFDVTASNIVIDTYAKCGDLLASRKAFDRIKCRDSV-SWNTLINGYIQSRSY 316
Query: 303 VEATKFLYLMK 313
E K MK
Sbjct: 317 GEGVKLFKKMK 327
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 75/268 (27%), Positives = 147/268 (54%), Gaps = 9/268 (3%)
Query: 31 ELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDV 90
E+++ + +++ + ++ N LL M+ G+L A+++F++M ++D+ SW +I GY +
Sbjct: 154 EVIHGLVEKLGMNIDVIMSNGLLSMYFKFGRLMDAQRVFNKMVVKDYVSWNTLICGYCQM 213
Query: 91 ADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSR 150
++E I LF EM+KR + +L I VL+AC ++E GK VH + + G
Sbjct: 214 ELFEESIQLFREMVKRFRPDLL------TITSVLRACGLLRDLEFGKFVHDYILRSGIEF 267
Query: 151 NISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMG 210
+++ + +I+ Y K L + F ++K ++V W I + + + FK+M
Sbjct: 268 DVTASNIVIDTYAKCGDLLASRKAFDRIKCRDSVSWNTLINGYIQSRSYGEGVKLFKKM- 326
Query: 211 RERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLL 270
+ +K +S TF ++L + D G+++H ++ K+G +SD V LVDMY KC +
Sbjct: 327 KMDLKPDSITFVTLLSISTRLADT-ELGKEIHCDLAKLGFDSDLVVSNALVDMYSKCGNV 385
Query: 271 RDAERVFELIVDKKNIASWNAMLVGYIR 298
+D+ +VFE + ++I +WN ++ ++
Sbjct: 386 KDSLKVFENM-KVRDIVTWNTIIAACVQ 412
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 82/286 (28%), Positives = 130/286 (45%), Gaps = 14/286 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N ++ + CG L +R+ FD + RD SW +I GY+ Y E + LF KK
Sbjct: 273 NIVIDTYAKCGDLLASRKAFDRIKCRDSVSWNTLINGYIQSRSYGEGVKLF------KKM 326
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
M L + V +L + ELGK++H L KLG ++ ++ +L++ Y K ++
Sbjct: 327 KMDLKPDSITFVTLLSISTRLADTELGKEIHCDLAKLGFDSDLVVSNALVDMYSKCGNVK 386
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
D+ VF +K + V W I + F +M E + + T +L C
Sbjct: 387 DSLKVFENMKVRDIVTWNTIIAACVQAEDCTLAFRMISQMRNEELIPDMGTLLGILPICS 446
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ G+++HA K G ES V L++MY KC L+ RVFE + K++ +W
Sbjct: 447 LIAAKRQ-GKEVHACTFKFGFESTVPVGNALIEMYSKCSNLKYCIRVFE-DMKTKDVVTW 504
Query: 290 NAMLVGYIRNGLYVEATKFLYL---MKASGIQIQESLINDLRIACS 332
A++ Y G+Y E K L M+ +GI + ACS
Sbjct: 505 TALVSAY---GMYGEGKKALRAFAEMEEAGIIPDHIAFVAIIYACS 547
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 79/153 (51%), Gaps = 2/153 (1%)
Query: 186 WTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANI 245
W + I G F + + + +M +K ++YTF SV+ AC + D G + ++
Sbjct: 1 WNSVIRALTHNGLFSKALDLYFKMKDFNVKPDTYTFPSVINACAALGD-FEIGNVVQNHV 59
Query: 246 VKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEA 305
++IG D Y+ LVDMY + L A VFE + ++I SWN+++ GY NG + EA
Sbjct: 60 LEIGFGFDLYIGNALVDMYARFGDLVKARNVFEEMT-HRDIVSWNSLISGYSANGYWDEA 118
Query: 306 TKFLYLMKASGIQIQESLINDLRIACSSISASK 338
+ Y ++ +G++ ++ + AC + A K
Sbjct: 119 LEIYYELRIAGLKPDNFTLSSVLPACGGLLAVK 151
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 85/206 (41%), Gaps = 8/206 (3%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
++ L+ N L+ M+ CG + + ++F+ M +RD +W +I V D
Sbjct: 362 KLGFDSDLVVSNALVDMYSKCGNVKDSLKVFENMKVRDIVTWNTIIAACVQAEDCTLAFR 421
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
+ ++M + L+ ++ +L C GK+VH FK G + + +L
Sbjct: 422 MISQMRNEE-----LIPDMGTLLGILPICSLIAAKRQGKEVHACTFKFGFESTVPVGNAL 476
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
I Y K L+ VF +K + V WTA + G + F EM I +
Sbjct: 477 IEMYSKCSNLKYCIRVFEDMKTKDVVTWTALVSAYGMYGEGKKALRAFAEMEEAGIIPDH 536
Query: 219 YTFSSVLKAC---GGVDDDGNCGRQM 241
F +++ AC G V++ C M
Sbjct: 537 IAFVAIIYACSHSGSVEEGLACFDHM 562
>gi|347954462|gb|AEP33731.1| chlororespiratory reduction 21, partial [Crucihimalaya wallichii]
Length = 830
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 85/318 (26%), Positives = 156/318 (49%), Gaps = 16/318 (5%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFL-NRLLLMHVSC 59
MD L I ++Y +++ C +++D ++ I K + ++ +L++ + C
Sbjct: 61 MDFRNLRIGPEIYGEILQGCVYERDLCTGKQIHARILKNGDFYAGNEYIETKLVIFYAKC 120
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AW 118
L+ A+ LF ++ +R+ SWA +I + + + F EM++ + +FP +
Sbjct: 121 DALEIAQVLFSKLRVRNVFSWAAIIGVKCRIGLCEGALMGFVEMLENE------IFPDNF 174
Query: 119 IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL 178
++ V KAC G+ VHG + K G + + SL + YGK L+DA VF ++
Sbjct: 175 VVPNVCKACGALQWSRFGRGVHGYVVKAGLEDCVFVASSLADMYGKCGVLDDARKVFDEI 234
Query: 179 KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC---GGVDDDG 235
N V W A +V + G + +M ++ ++ + T S+ L A GGV +
Sbjct: 235 PERNVVAWNALLVGYVQNGMNEEAIRLLSDMRKDGVEPSRVTVSTCLSASANMGGVAE-- 292
Query: 236 NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
G+Q HA + GLE D + L++ Y K L+ AE +F+ + D K++ +WN ++ G
Sbjct: 293 --GKQSHAIAILNGLELDNILGTSLLNFYCKVGLIEYAEMIFDRMFD-KDVVTWNLLISG 349
Query: 296 YIRNGLYVEATKFLYLMK 313
Y++ GL +A LM+
Sbjct: 350 YVQQGLVEDAIYMCQLMR 367
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/264 (30%), Positives = 131/264 (49%), Gaps = 9/264 (3%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+ CG LD AR++FDE+P R+ +W ++VGYV +E I L ++M RK G V
Sbjct: 217 MYGKCGVLDDARKVFDEIPERNVVAWNALLVGYVQNGMNEEAIRLLSDM--RKDG----V 270
Query: 115 FPAWIIVCV-LKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADF 173
P+ + V L A + GKQ H + G + L SL+NFY K +E A+
Sbjct: 271 EPSRVTVSTCLSASANMGGVAEGKQSHAIAILNGLELDNILGTSLLNFYCKVGLIEYAEM 330
Query: 174 VFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDD 233
+F ++ + V W I ++G + M E +K + T S+++ A +
Sbjct: 331 IFDRMFDKDVVTWNLLISGYVQQGLVEDAIYMCQLMRLENLKYDCVTLSTLMSAAARTKN 390
Query: 234 DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
G+++ ++ LESD + +DMY KC + DA++VF+ V+ K++ WN +L
Sbjct: 391 L-KFGKEVQCYCIRHSLESDIVLASITMDMYAKCGSIVDAKKVFDSTVE-KDLILWNTLL 448
Query: 294 VGYIRNGLYVEATKFLYLMKASGI 317
Y +GL EA + Y M+ +
Sbjct: 449 AAYAESGLSGEALRLFYEMQLESV 472
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 95/203 (46%), Gaps = 20/203 (9%)
Query: 41 NIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFN----SWAVMIVGYVDVADYQEC 96
++ P ++ N ++L + G+++ A+++F +M + SW M+ G V +E
Sbjct: 471 SVPPNVITWNLIILSLLRNGEVNEAKEMFLQMQSSGISPNLISWTTMMNGMVQNGCSEEA 530
Query: 97 ITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFK-LGSSRNISLT 155
I +M L A+ I L A ++ G+ +HG + + L S ++S+
Sbjct: 531 ILFLRKMQDSG-----LRPNAFSITVALSASANLASLHFGRSIHGYIVRNLQHSSSVSIE 585
Query: 156 GSLINFYGKFRCLEDADFVF-----SQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMG 210
SL++ Y K + A+ VF S+L +N ++ + N +E ++ ++MG
Sbjct: 586 TSLVDMYAKCGDINKAERVFGSKLYSELPLYNAMISAYALYGNVKEAI--TLYRSLEDMG 643
Query: 211 RERIKKNSYTFSSVLKACGGVDD 233
K ++ TF+S+L AC V D
Sbjct: 644 N---KPDNITFTSLLSACNHVGD 663
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 56/270 (20%), Positives = 106/270 (39%), Gaps = 44/270 (16%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL + G ++ A +FD M +D +W ++I GYV ++ I + ++M+ +
Sbjct: 315 LLNFYCKVGLIEYAEMIFDRMFDKDVVTWNLLISGYVQQGLVEDAIYM-CQLMRLEN--- 370
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
L + + ++ A T N++ GK+V + +I L ++ Y K + DA
Sbjct: 371 -LKYDCVTLSTLMSAAARTKNLKFGKEVQCYCIRHSLESDIVLASITMDMYAKCGSIVDA 429
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--- 228
VF + ++W + G + F EM E + N T++ ++ +
Sbjct: 430 KKVFDSTVEKDLILWNTLLAAYAESGLSGEALRLFYEMQLESVPPNVITWNLIILSLLRN 489
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
G V++ QM ++ + N+ S
Sbjct: 490 GEVNEAKEMFLQMQSSGI------------------------------------SPNLIS 513
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
W M+ G ++NG EA FL M+ SG++
Sbjct: 514 WTTMMNGMVQNGCSEEAILFLRKMQDSGLR 543
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/297 (20%), Positives = 112/297 (37%), Gaps = 39/297 (13%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R +++ ++ + + M+ CG + A+++FD +D W ++ Y + E +
Sbjct: 403 RHSLESDIVLASITMDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAYAESGLSGEALR 462
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
LF EM L P +I L N E+ + +F S IS
Sbjct: 463 LFYEMQ-------LESVPPNVITWNLIILSLLRNGEVNEAKE--MFLQMQSSGIS----- 508
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
N + WT + + G + ++M ++ N+
Sbjct: 509 ----------------------PNLISWTTMMNGMVQNGCSEEAILFLRKMQDSGLRPNA 546
Query: 219 YTFSSVLKACGGVDDDGNCGRQMHANIVK-IGLESDEYVQCGLVDMYGKCRLLRDAERVF 277
++ + L A + + GR +H IV+ + S ++ LVDMY KC + AERVF
Sbjct: 547 FSITVALSASANLASL-HFGRSIHGYIVRNLQHSSSVSIETSLVDMYAKCGDINKAERVF 605
Query: 278 ELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
+ + +NAM+ Y G EA ++ G + L AC+ +
Sbjct: 606 GSKL-YSELPLYNAMISAYALYGNVKEAITLYRSLEDMGNKPDNITFTSLLSACNHV 661
>gi|359490688|ref|XP_003634143.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like [Vitis vinifera]
Length = 631
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 82/265 (30%), Positives = 138/265 (52%), Gaps = 11/265 (4%)
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI 119
G L +A ++FD+MP R+ +W +MI + + ++ I LF +M G++ F
Sbjct: 228 GDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDM--ELSGYVPDRF---T 282
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC---LEDADFVFS 176
VL AC + LGKQ+H + +LG + ++ + SL++ Y K ++D+ VF
Sbjct: 283 YSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFE 342
Query: 177 QLKRHNTVVWTAKIVNNCREGHF-HQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDG 235
++ HN + WTA I + G + F +M I N ++FSSVLKACG + D
Sbjct: 343 RMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIWPNHFSFSSVLKACGNLSDP- 401
Query: 236 NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
G Q+++ VK+G+ S V L+ MY + + DA + F+++ + KN+ S+NA++ G
Sbjct: 402 YTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFE-KNLVSYNAIVDG 460
Query: 296 YIRNGLYVEATKFLYLMKASGIQIQ 320
Y +N EA + +GI I
Sbjct: 461 YAKNLKSEEAFLLFNEIADTGIGIS 485
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 81/304 (26%), Positives = 150/304 (49%), Gaps = 22/304 (7%)
Query: 7 PITTDMYTCLIKECTFQKDSAGAFELLNHIRKRV---NIKPTLLFLNRLLLMHVSCGQLD 63
P Y+ L+K C ++ F+L + +++ ++ + LN L+ ++ CG +
Sbjct: 72 PPDLTTYSILLKSCIRFRN----FQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGDTE 127
Query: 64 TARQLFDEMP-LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIV 121
TAR +F+ M RD SW+ M+ + + + + I F +M++ L +P +
Sbjct: 128 TARLIFEGMGNKRDLVSWSAMVSCFANNSMELQAIWTFLDMLE------LGFYPNEYCFA 181
Query: 122 CVLKACVCTMNMELGKQVHGLLFKLGS-SRNISLTGSLINFYGKFRC-LEDADFVFSQLK 179
V++AC + +G+ ++G + K G ++ + LI+ + K L A VF ++
Sbjct: 182 AVIRACSNANHAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMP 241
Query: 180 RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGR 239
N V WT I + G + F +M + +T+SSVL AC + G+
Sbjct: 242 ERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLA-LGK 300
Query: 240 QMHANIVKIGLESDEYVQCGLVDMYGKCRL---LRDAERVFELIVDKKNIASWNAMLVGY 296
Q+H+ ++++GL D V C LVDMY KC + D+ +VFE + + N+ SW A++ Y
Sbjct: 301 QLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFERM-PEHNVMSWTAIITAY 359
Query: 297 IRNG 300
+++G
Sbjct: 360 VQSG 363
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 87/183 (47%), Gaps = 11/183 (6%)
Query: 52 LLLMHVSC---GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVAD-YQECITLFAEMMKRK 107
L+ M+ C G +D +R++F+ MP + SW +I YV + +E I LF +M+
Sbjct: 321 LVDMYAKCAADGSVDDSRKVFERMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMIS-- 378
Query: 108 KGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166
GH ++P + VLKAC + G+QV+ KLG + + SLI+ Y +
Sbjct: 379 -GH---IWPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSG 434
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
+EDA F L N V + A + + + F F E+ I +++TF+S+L
Sbjct: 435 RMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLS 494
Query: 227 ACG 229
Sbjct: 495 GAA 497
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 71/157 (45%), Gaps = 1/157 (0%)
Query: 177 QLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGN 236
LK N +++ G H F+ M ++ + T+S +LK+C +
Sbjct: 34 SLKNPNFEPLKNRLIRQLDVGRLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNF-Q 92
Query: 237 CGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGY 296
G+ +H +++ GLE D V L+ +Y KC A +FE + +K+++ SW+AM+ +
Sbjct: 93 LGKLVHRKLMQSGLELDSVVLNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCF 152
Query: 297 IRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSS 333
N + ++A M G E + ACS+
Sbjct: 153 ANNSMELQAIWTFLDMLELGFYPNEYCFAAVIRACSN 189
>gi|302814049|ref|XP_002988709.1| hypothetical protein SELMODRAFT_128498 [Selaginella moellendorffii]
gi|300143530|gb|EFJ10220.1| hypothetical protein SELMODRAFT_128498 [Selaginella moellendorffii]
Length = 573
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 91/350 (26%), Positives = 151/350 (43%), Gaps = 52/350 (14%)
Query: 26 SAGAFELLNHIRKRV---NIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAV 82
+ G + I +R+ + P ++ N L+ ++ CG++D AR LFD M ++ SW
Sbjct: 22 AVGDLQRGQEIHRRIVDSGMTPDVVVHNSLVNLYAKCGRIDDARSLFDGMQVKSLASWNA 81
Query: 83 MIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGL 142
MI GY + E LF + G +L F + +L AC ++ G+ +H
Sbjct: 82 MIAGYAHLDLGDEAFDLFRCIDLEGLGPDMLTF-----INLLGACSTPEFVDAGRNIHAR 136
Query: 143 LFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH-NTVVWTAKIVNNCREGHFHQ 201
+ LG N+ L +L++ Y K +E A VF+ + + N V W A I GH +
Sbjct: 137 VAALGLDSNLVLATALLDMYAKCGSIEGARSVFASMADNKNQVSWNAMIAARVEYGHPDE 196
Query: 202 VFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLV 261
+ +M + +K N++T +SVL AC V+ G Q+H+ + G E D V+ LV
Sbjct: 197 AMYLYHQMHLQGLKPNAFTSASVLGACVCVEQ----GMQIHSWAMSCGFEDDPVVRTALV 252
Query: 262 DMYGKCRLLRDAERVF--------------ELIV-------------------------D 282
+MY K L +A +VF + IV
Sbjct: 253 NMYSKFGRLEEAAKVFADGQGFQNDPVAGHDSIVLQNSIINMYARCGSLDEARACFDSMP 312
Query: 283 KKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
++++ SWN ++ GY+ E+ K + M GI + + ACS
Sbjct: 313 RRSVVSWNVLMSGYVEQQQGEESLKLVRCMDWQGIHPNAFTFSCVATACS 362
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 91/339 (26%), Positives = 143/339 (42%), Gaps = 56/339 (16%)
Query: 40 VNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL-RDFNSWAVMIVGYVDVADYQECIT 98
+ + L+ LL M+ CG ++ AR +F M ++ SW MI V+ E +
Sbjct: 140 LGLDSNLVLATALLDMYAKCGSIEGARSVFASMADNKNQVSWNAMIAARVEYGHPDEAMY 199
Query: 99 LFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGS 157
L+ +M H+ + P A+ VL ACVC +E G Q+H G + + +
Sbjct: 200 LYHQM------HLQGLKPNAFTSASVLGACVC---VEQGMQIHSWAMSCGFEDDPVVRTA 250
Query: 158 LINFYGKFRCLEDADFVFS--------QLKRHNTVVWTAKIVN-NCREGHFHQVFNDFKE 208
L+N Y KF LE+A VF+ + H+++V I+N R G + F
Sbjct: 251 LVNMYSKFGRLEEAAKVFADGQGFQNDPVAGHDSIVLQNSIINMYARCGSLDEARACFDS 310
Query: 209 MGR-------------------------------ERIKKNSYTFSSVLKACGGVDDDGNC 237
M R + I N++TFS V AC + D
Sbjct: 311 MPRRSVVSWNVLMSGYVEQQQGEESLKLVRCMDWQGIHPNAFTFSCVATACSLLKDL-RA 369
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELI----VDKKNIASWNAML 293
GR H+ IV G ++D V L+DMYG+C + A R F+ + + ++ SWNAM+
Sbjct: 370 GRAAHSRIVASGFDTDRVVVTALMDMYGRCGSVEAARRTFDDMRRRCSTRVDVVSWNAMM 429
Query: 294 VGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
Y +G EA + M +G E + + AC+
Sbjct: 430 GLYSHHGQPREALELFGEMGLAGEAGNEVSLTLVLHACT 468
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 98/201 (48%), Gaps = 1/201 (0%)
Query: 118 WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQ 177
++ V+ A +++ G+++H + G + ++ + SL+N Y K ++DA +F
Sbjct: 11 FVYSSVVGAYCAVGDLQRGQEIHRRIVDSGMTPDVVVHNSLVNLYAKCGRIDDARSLFDG 70
Query: 178 LKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC 237
++ + W A I + F+ F+ + E + + TF ++L AC + +
Sbjct: 71 MQVKSLASWNAMIAGYAHLDLGDEAFDLFRCIDLEGLGPDMLTFINLLGACS-TPEFVDA 129
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYI 297
GR +HA + +GL+S+ + L+DMY KC + A VF + D KN SWNAM+ +
Sbjct: 130 GRNIHARVAALGLDSNLVLATALLDMYAKCGSIEGARSVFASMADNKNQVSWNAMIAARV 189
Query: 298 RNGLYVEATKFLYLMKASGIQ 318
G EA + M G++
Sbjct: 190 EYGHPDEAMYLYHQMHLQGLK 210
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/259 (26%), Positives = 111/259 (42%), Gaps = 21/259 (8%)
Query: 45 TLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMM 104
+++ N ++ M+ CG LD AR FD MP R SW V++ GYV+ +E + L M
Sbjct: 284 SIVLQNSIINMYARCGSLDEARACFDSMPRRSVVSWNVLMSGYVEQQQGEESLKLVRCMD 343
Query: 105 KRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYG 163
+ + P A+ CV AC ++ G+ H + G + + +L++ YG
Sbjct: 344 WQG------IHPNAFTFSCVATACSLLKDLRAGRAAHSRIVASGFDTDRVVVTALMDMYG 397
Query: 164 KFRCLEDADFVFSQLKRH-----NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
+ +E A F ++R + V W A + G + F EMG N
Sbjct: 398 RCGSVEAARRTFDDMRRRCSTRVDVVSWNAMMGLYSHHGQPREALELFGEMGLAGEAGNE 457
Query: 219 YTFSSVLKAC--GGVDDDG--NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAE 274
+ + VL AC G+ D R + A IV S E+ C +VD+ + L AE
Sbjct: 458 VSLTLVLHACTHAGLVADAVEALARGVEAGIVP----SREHYAC-VVDVLARAGKLEVAE 512
Query: 275 RVFELIVDKKNIASWNAML 293
V + + I +W +L
Sbjct: 513 EVMNNMPVEPGIGAWKCLL 531
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 63/125 (50%), Gaps = 2/125 (1%)
Query: 209 MGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCR 268
M E ++ + + +SSV+ A V D G+++H IV G+ D V LV++Y KC
Sbjct: 1 MQEEGVQPDMFVYSSVVGAYCAVGDLQR-GQEIHRRIVDSGMTPDVVVHNSLVNLYAKCG 59
Query: 269 LLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLR 328
+ DA +F+ + K++ASWNAM+ GY L EA + G+ +L
Sbjct: 60 RIDDARSLFDGM-QVKSLASWNAMIAGYAHLDLGDEAFDLFRCIDLEGLGPDMLTFINLL 118
Query: 329 IACSS 333
ACS+
Sbjct: 119 GACST 123
>gi|28392910|gb|AAO41891.1| putative selenium-binding protein [Arabidopsis thaliana]
Length = 630
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 87/290 (30%), Positives = 138/290 (47%), Gaps = 12/290 (4%)
Query: 43 KPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAE 102
+P + +N L+ M+V L+ A QLFD+MP R+ SW MI Y +Q+ + L
Sbjct: 93 RPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVL 152
Query: 103 MMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFY 162
M++ + + + VL++C M + +H + K G ++ + +LI+ +
Sbjct: 153 MLRDNVRPNVYTYSS-----VLRSC---NGMSDVRMLHCGIIKEGLESDVFVRSALIDVF 204
Query: 163 GKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFS 222
K EDA VF ++ + +VW + I + FK M R T +
Sbjct: 205 AKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLT 264
Query: 223 SVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282
SVL+AC G+ G Q H +IVK + D + LVDMY KC L DA RVF +
Sbjct: 265 SVLRACTGL-ALLELGMQAHVHIVK--YDQDLILNNALVDMYCKCGSLEDALRVFNQM-K 320
Query: 283 KKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
++++ +W+ M+ G +NG EA K MK+SG + I + ACS
Sbjct: 321 ERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACS 370
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 106/213 (49%), Gaps = 5/213 (2%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
++K C+ + G + L+ G + L LIN Y KF L DA +F Q+ + N
Sbjct: 67 LIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRN 126
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
+ WT I + + M R+ ++ N YT+SSVL++C G+ D R +H
Sbjct: 127 VISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSD----VRMLH 182
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
I+K GLESD +V+ L+D++ K DA VF+ +V I WN+++ G+ +N
Sbjct: 183 CGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIV-WNSIIGGFAQNSRS 241
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
A + MK +G +++ + + AC+ ++
Sbjct: 242 DVALELFKRMKRAGFIAEQATLTSVLRACTGLA 274
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 106/236 (44%), Gaps = 11/236 (4%)
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI 119
G+ + A +FDEM D W +I G+ + + LF M ++ G +
Sbjct: 208 GEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRM--KRAG---FIAEQAT 262
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
+ VL+AC +ELG Q H + K +++ L +L++ Y K LEDA VF+Q+K
Sbjct: 263 LTSVLRACTGLALLELGMQAHVHIVKY--DQDLILNNALVDMYCKCGSLEDALRVFNQMK 320
Query: 180 RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--GGVDDDGNC 237
+ + W+ I + G+ + F+ M K N T VL AC G+ +DG
Sbjct: 321 ERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWY 380
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
+ + I + Y C ++D+ GK L DA ++ + + + +W +L
Sbjct: 381 YFRSMKKLYGIDPVREHY-GC-MIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLL 434
>gi|255585273|ref|XP_002533336.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526827|gb|EEF29045.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 708
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 82/277 (29%), Positives = 127/277 (45%), Gaps = 10/277 (3%)
Query: 58 SCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPA 117
S G L A LFDEM RD +W MI GYV+ L+ M L+ A
Sbjct: 48 SSGGLTFACNLFDEMSHRDTVTWNTMISGYVNSGSLGSAWELYKSMKS-----FGLMPDA 102
Query: 118 WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQ 177
+ +LK C +++G+QVH L+ K+G ++ +L++ Y K + DA VF
Sbjct: 103 YTFGSILKGVACACRLDVGQQVHSLIVKMGYEEHVYAGSALLDMYAKCERVRDAFMVFKC 162
Query: 178 LKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDG-- 235
+ R N+V W A I EG F + M E ++ + TFS +L +D+
Sbjct: 163 IPRRNSVSWNALIAGFVLEGDHDTAFWLLRCMEEEGVRLDDGTFSPLLTL---LDEKKFY 219
Query: 236 NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
Q+H I+K G++ D V + Y +C L DAERVF+ V +++ +WN+ML
Sbjct: 220 KLTMQLHCKIIKHGVQFDNTVCNATITSYSQCGSLEDAERVFDGAVGSRDLVTWNSMLAA 279
Query: 296 YIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
++ + A K M+ G + + ACS
Sbjct: 280 FLAHDRKETAFKLFLDMQQFGFEPDIYTYTTIISACS 316
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/285 (23%), Positives = 123/285 (43%), Gaps = 15/285 (5%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHV--SCGQLDTARQLFD 70
YT +I C+ KD+ + L R + P N ++ M++ S ++ A +F
Sbjct: 308 YTTIISACS-HKDNGKSLHGLVIKRGLEQLVP---ICNAVIAMYLESSSNSMEDALNVFH 363
Query: 71 EMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCT 130
M +D SW ++ G+ + + LF M ++ + VL++C
Sbjct: 364 SMESKDRVSWNSILTGFSQTGHSENALKLFVHMR-----FAVVDIDHYAFSAVLRSCSDL 418
Query: 131 MNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKI 190
++LG+Q+H L K G N + SLI Y K +EDA F + + +++ W + +
Sbjct: 419 ATLQLGQQIHVLTVKSGFESNDFVASSLIFMYSKCGMIEDARKSFEKTAKDSSITWNSIM 478
Query: 191 VNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG--GVDDDGNCGRQMHANIVKI 248
+ G F +M +++K + TF + L AC G+ + G + A+ I
Sbjct: 479 FAYAQHGQGDVALGLFFQMRDKKVKMDHITFVAALTACSHIGLVEQGRYLLKSMASDYGI 538
Query: 249 GLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
+ Y C VD++G+ L +A+ + E + + W +L
Sbjct: 539 SPRMEHYA-CA-VDLFGRAGYLDEAKALIESMPFDPDAMVWKTLL 581
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 69/290 (23%), Positives = 127/290 (43%), Gaps = 19/290 (6%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL M+ C ++ A +F +P R+ SW +I G+V D+ L M ++G
Sbjct: 143 LLDMYAKCERVRDAFMVFKCIPRRNSVSWNALIAGFVLEGDHDTAFWLLRCM--EEEGVR 200
Query: 112 L---LVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
L P ++ K TM Q+H + K G + ++ + I Y + L
Sbjct: 201 LDDGTFSPLLTLLDEKKFYKLTM------QLHCKIIKHGVQFDNTVCNATITSYSQCGSL 254
Query: 169 EDADFVF-SQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
EDA+ VF + + V W + + F F +M + + + YT+++++ A
Sbjct: 255 EDAERVFDGAVGSRDLVTWNSMLAAFLAHDRKETAFKLFLDMQQFGFEPDIYTYTTIISA 314
Query: 228 CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMY--GKCRLLRDAERVFELIVDKKN 285
C D+ G+ +H ++K GLE + ++ MY + DA VF + + K+
Sbjct: 315 CSHKDN----GKSLHGLVIKRGLEQLVPICNAVIAMYLESSSNSMEDALNVFHSM-ESKD 369
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
SWN++L G+ + G A K M+ + + I + + +CS ++
Sbjct: 370 RVSWNSILTGFSQTGHSENALKLFVHMRFAVVDIDHYAFSAVLRSCSDLA 419
>gi|242077664|ref|XP_002448768.1| hypothetical protein SORBIDRAFT_06g032835 [Sorghum bicolor]
gi|241939951|gb|EES13096.1| hypothetical protein SORBIDRAFT_06g032835 [Sorghum bicolor]
Length = 598
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 87/331 (26%), Positives = 147/331 (44%), Gaps = 15/331 (4%)
Query: 5 CLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDT 64
C P + + L +F G L + R+ ++ N L GQL+
Sbjct: 139 CPPNEFALASAL-NASSFAPAGTGCARQLYALSVRLGFDSSVFLTNAFLAAMARHGQLED 197
Query: 65 ARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK---RKKGHMLLVFPAWIIV 121
A +LF+ +RD SW ++ G+ Q I L+ M++ R G +
Sbjct: 198 AVRLFNGSSVRDIVSWNTLLAGFARHWSVQGWI-LWRRMVREAVRADG--------FSFS 248
Query: 122 CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH 181
VL + ++ G QVH L K G ++ + SL+ Y K +CL D F++++
Sbjct: 249 TVLSGLAASTSLASGLQVHAQLVKSGFGDDVYVGNSLVEMYMKSKCLADGTMAFAEIRCK 308
Query: 182 NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQM 241
+ V WT G + +M + + NSYTF++ AC + D + GR++
Sbjct: 309 DVVSWTGMAAGCLHCGEPSKAIGILSQMMLDGVMPNSYTFATSANACASLTDL-DEGRKV 367
Query: 242 HANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGL 301
H ++K+G +SD V L+DMY KC + A +VF+ + ++ + SW AM++G+ NG
Sbjct: 368 HGYVIKLGDDSDIGVNNALIDMYAKCGSVACAHKVFQSM-QQRPVISWTAMIMGFAHNGR 426
Query: 302 YVEATKFLYLMKASGIQIQESLINDLRIACS 332
EA + M G+ + + ACS
Sbjct: 427 AQEAVEVFDDMLLKGVAPNRVTMICILYACS 457
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 88/336 (26%), Positives = 140/336 (41%), Gaps = 21/336 (6%)
Query: 7 PITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLL----FL-NRLLLMHVSCGQ 61
P+ + Y L+ Q+ A A L +KP +L FL N LL+ + C
Sbjct: 38 PLPSYHYAALL-----QRSGATADPRLAAALHAALLKPGVLACHVFLHNHLLIAYFKCRL 92
Query: 62 LDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIV 121
++ DEMP R+ SW+ I G ++ + LF M R G F +
Sbjct: 93 HRRGLRVLDEMPHRNAVSWSAAIAGLAQGGRPRDALALFIRM--RLAGCPPNEF---ALA 147
Query: 122 CVLKA-CVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
L A +Q++ L +LG ++ LT + + + LEDA +F+
Sbjct: 148 SALNASSFAPAGTGCARQLYALSVRLGFDSSVFLTNAFLAAMARHGQLEDAVRLFNGSSV 207
Query: 181 HNTVVWTAKIVNNCREGHFH-QVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGR 239
+ V W + R H+ Q + ++ M RE ++ + ++FS+VL + G
Sbjct: 208 RDIVSWNTLLAGFAR--HWSVQGWILWRRMVREAVRADGFSFSTVLSGLAASTSLAS-GL 264
Query: 240 QMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRN 299
Q+HA +VK G D YV LV+MY K + L D F I K++ SW M G +
Sbjct: 265 QVHAQLVKSGFGDDVYVGNSLVEMYMKSKCLADGTMAFAEI-RCKDVVSWTGMAAGCLHC 323
Query: 300 GLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
G +A L M G+ AC+S++
Sbjct: 324 GEPSKAIGILSQMMLDGVMPNSYTFATSANACASLT 359
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 64/254 (25%), Positives = 112/254 (44%), Gaps = 11/254 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M++ L F E+ +D SW M G + + + I + ++MM
Sbjct: 283 NSLVEMYMKSKCLADGTMAFAEIRCKDVVSWTGMAAGCLHCGEPSKAIGILSQMM----- 337
Query: 110 HMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+ V P ++ AC +++ G++VHG + KLG +I + +LI+ Y K +
Sbjct: 338 -LDGVMPNSYTFATSANACASLTDLDEGRKVHGYVIKLGDDSDIGVNNALIDMYAKCGSV 396
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
A VF +++ + WTA I+ G + F +M + + N T +L AC
Sbjct: 397 ACAHKVFQSMQQRPVISWTAMIMGFAHNGRAQEAVEVFDDMLLKGVAPNRVTMICILYAC 456
Query: 229 --GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
GG D+G +A K G++ E +VD+ GK + +AE + + +
Sbjct: 457 SQGGFVDEGWI--YFNAMEDKFGIQPGEDHYACMVDLLGKAGHIEEAEELISRMPFPPGV 514
Query: 287 ASWNAMLVGYIRNG 300
W A+L R+G
Sbjct: 515 LVWQALLGACHRHG 528
>gi|255559012|ref|XP_002520529.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540371|gb|EEF41942.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 606
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 85/289 (29%), Positives = 139/289 (48%), Gaps = 14/289 (4%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ C +D + ++FD M ++ +W M+ Y E + L EMM+
Sbjct: 200 LIDMYSKCDGVDDSWRVFDYMVDKNVVTWTAMVTAYAQNEQPDEAMILVREMMRLGIKAN 259
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK-FRCLED 170
+ + + +L + M+ KQVH + + G N+ + +L+ Y K LED
Sbjct: 260 YVTYNS-----LLSSFSGPKYMQYCKQVHCSIIRCGLECNLYIAATLVTVYSKCTNNLED 314
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG- 229
+ + S ++ + + W A I G F EM IK + YTF+S+L A G
Sbjct: 315 FNKISSGVQLSDQISWNAVIAGYSNLGLGEDALKCFCEMRHANIKMDFYTFTSLLGAIGA 374
Query: 230 --GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
+++ GR+MHA IVK G S YVQ GLV MY +C + D++RVF L+ D ++
Sbjct: 375 FLAIEE----GREMHALIVKTGYASSVYVQNGLVSMYARCGAIDDSKRVFWLMED-HDVV 429
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
SWNA+L G +G EA + M+ + I+ + + ACS + +
Sbjct: 430 SWNALLTGCAHHGFGNEAVELFEQMRKTKIKPNSTTFLAVLSACSHVGS 478
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 77/268 (28%), Positives = 126/268 (47%), Gaps = 23/268 (8%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADY--QECITLFAEMMKRKKGHML 112
M+ C ++ +A ++F+EMP R+ +W +I GY++V +T F+
Sbjct: 113 MYAKCSEIQSAHEVFNEMPERNDVTWNSLIFGYLNVMPTCAMRGVTSFS----------- 161
Query: 113 LVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDAD 172
+ L C G QVHGL KLG N+ + +LI+ Y K ++D+
Sbjct: 162 -------VSTCLVVCSQLEVRNFGAQVHGLSLKLGFDNNVFVGTALIDMYSKCDGVDDSW 214
Query: 173 FVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVD 232
VF + N V WTA + + + +EM R IK N T++S+L + G
Sbjct: 215 RVFDYMVDKNVVTWTAMVTAYAQNEQPDEAMILVREMMRLGIKANYVTYNSLLSSFSGPK 274
Query: 233 DDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKC-RLLRDAERVFELIVDKKNIASWNA 291
C +Q+H +I++ GLE + Y+ LV +Y KC L D ++ + I SWNA
Sbjct: 275 YMQYC-KQVHCSIIRCGLECNLYIAATLVTVYSKCTNNLEDFNKISSGVQLSDQI-SWNA 332
Query: 292 MLVGYIRNGLYVEATKFLYLMKASGIQI 319
++ GY GL +A K M+ + I++
Sbjct: 333 VIAGYSNLGLGEDALKCFCEMRHANIKM 360
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 105/217 (48%), Gaps = 18/217 (8%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
V+ C + +LG Q+H + ++G + N+ + ++++ Y K ++ A VF+++ N
Sbjct: 75 VVSFCAKFASYDLGIQLHSTIIRMGFTSNVHICSAVVDMYAKCSEIQSAHEVFNEMPERN 134
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKK-NSYTFSSVLKACGGVDDDGNCGRQM 241
V W + I F M ++ S++ S+ L C ++ N G Q+
Sbjct: 135 DVTWNSLI------------FGYLNVMPTCAMRGVTSFSVSTCLVVCSQLEVR-NFGAQV 181
Query: 242 HANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGL 301
H +K+G +++ +V L+DMY KC + D+ RVF+ +VD KN+ +W AM+ Y +N
Sbjct: 182 HGLSLKLGFDNNVFVGTALIDMYSKCDGVDDSWRVFDYMVD-KNVVTWTAMVTAYAQNEQ 240
Query: 302 YVEATKFLYLMKASGIQIQESLINDLRIACSSISASK 338
EA + M GI+ N L SS S K
Sbjct: 241 PDEAMILVREMMRLGIKANYVTYNSL---LSSFSGPK 274
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/266 (23%), Positives = 122/266 (45%), Gaps = 11/266 (4%)
Query: 39 RVNIKPTLLFLNRLLLMHVSC-GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECI 97
R ++ L L+ ++ C L+ ++ + L D SW +I GY ++ ++ +
Sbjct: 288 RCGLECNLYIAATLVTVYSKCTNNLEDFNKISSGVQLSDQISWNAVIAGYSNLGLGEDAL 347
Query: 98 TLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGS 157
F EM H + + +L A + +E G+++H L+ K G + ++ +
Sbjct: 348 KCFCEMR-----HANIKMDFYTFTSLLGAIGAFLAIEEGREMHALIVKTGYASSVYVQNG 402
Query: 158 LINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKN 217
L++ Y + ++D+ VF ++ H+ V W A + G ++ F++M + +IK N
Sbjct: 403 LVSMYARCGAIDDSKRVFWLMEDHDVVSWNALLTGCAHHGFGNEAVELFEQMRKTKIKPN 462
Query: 218 SYTFSSVLKAC---GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAE 274
S TF +VL AC G VD M ++I L + Y +VD++G+ L +AE
Sbjct: 463 STTFLAVLSACSHVGSVDKGLEYFDFMRSDISLEPLRVEHYAS--VVDIFGRAGYLSEAE 520
Query: 275 RVFELIVDKKNIASWNAMLVGYIRNG 300
+ + + + A+L + +G
Sbjct: 521 AIINCMPMDPGPSVYKALLSACLVHG 546
>gi|357449183|ref|XP_003594868.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355483916|gb|AES65119.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 874
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 91/329 (27%), Positives = 155/329 (47%), Gaps = 12/329 (3%)
Query: 6 LPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTA 65
+P + ++K +D +L H+ K PT + N L+ M+ CG +D A
Sbjct: 81 VPPDNFAFPAVLKATAGIQDLNLGKQLHAHVFKFGQALPTAV-PNSLVNMYGKCGDIDAA 139
Query: 66 RQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLK 125
R++FDE+ RD SW MI +++ + LF M+ G ++ +V V
Sbjct: 140 RRVFDEITNRDDVSWNSMINAACRFEEWELAVHLFRLMLLENVGPT-----SFTLVSVAH 194
Query: 126 ACVCTMN-MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTV 184
AC +N + LGKQVH + + G R + +L+ Y K + +A +F + V
Sbjct: 195 ACSNLINGLLLGKQVHAFVLRNGDWRTFT-NNALVTMYAKLGRVYEAKTLFDVFDDKDLV 253
Query: 185 VWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHAN 244
W I + + F + M + ++ N T +SVL AC ++ G CG+++HA
Sbjct: 254 SWNTIISSLSQNDRFEEALLYLHVMLQSGVRPNGVTLASVLPACSHLEMLG-CGKEIHAF 312
Query: 245 IV-KIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYV 303
++ L + +V C LVDMY C+ VF+ + ++ IA WNAM+ GY+RN
Sbjct: 313 VLMNNDLIENSFVGCALVDMYCNCKQPEKGRLVFDGMF-RRTIAVWNAMIAGYVRNEFDY 371
Query: 304 EATK-FLYLMKASGIQIQESLINDLRIAC 331
EA + F+ ++ G+ ++ + AC
Sbjct: 372 EAIELFVEMVFELGLSPNSVTLSSVLPAC 400
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 121/244 (49%), Gaps = 7/244 (2%)
Query: 91 ADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSR 150
+ + + I+ + M+ FPA VLKA ++ LGKQ+H +FK G +
Sbjct: 64 STFHQAISTYTNMVTAGVPPDNFAFPA-----VLKATAGIQDLNLGKQLHAHVFKFGQAL 118
Query: 151 NISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMG 210
++ SL+N YGK ++ A VF ++ + V W + I CR + + F+ M
Sbjct: 119 PTAVPNSLVNMYGKCGDIDAARRVFDEITNRDDVSWNSMINAACRFEEWELAVHLFRLML 178
Query: 211 RERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLL 270
E + S+T SV AC + + G+Q+HA +++ G + + LV MY K +
Sbjct: 179 LENVGPTSFTLVSVAHACSNLINGLLLGKQVHAFVLRNG-DWRTFTNNALVTMYAKLGRV 237
Query: 271 RDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIA 330
+A+ +F+ + D K++ SWN ++ +N + EA +L++M SG++ + + A
Sbjct: 238 YEAKTLFD-VFDDKDLVSWNTIISSLSQNDRFEEALLYLHVMLQSGVRPNGVTLASVLPA 296
Query: 331 CSSI 334
CS +
Sbjct: 297 CSHL 300
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 82/294 (27%), Positives = 132/294 (44%), Gaps = 24/294 (8%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ +C Q + R +FD M R W MI GYV E I LF EM+ +
Sbjct: 329 LVDMYCNCKQPEKGRLVFDGMFRRTIAVWNAMIAGYVRNEFDYEAIELFVEMVFE----L 384
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
L + + VL ACV + + +H + K G ++ + +L++ Y + +E A
Sbjct: 385 GLSPNSVTLSSVLPACVRCESFLDKEGIHSCVVKWGFEKDKYVQNALMDMYSRMGRIEIA 444
Query: 172 DFVFSQLKRHNTVVWTAKI---------------VNNCREG---HFHQVFNDFKEMGRER 213
+F + R + V W I +++ + G H F+D+++
Sbjct: 445 RSIFGSMNRKDIVSWNTMITGYVVCGRHDDALNLLHDMQRGQAEHRINTFDDYEDNKNFP 504
Query: 214 IKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDA 273
+K NS T +VL C + G G+++HA VK L D V LVDMY KC L +
Sbjct: 505 LKPNSVTLMTVLPGCAALAALGK-GKEIHAYAVKQMLSKDVAVGSALVDMYAKCGCLNLS 563
Query: 274 ERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDL 327
VFE + +N+ +WN +++ Y +G EA K M G +E N++
Sbjct: 564 RTVFEQM-SVRNVITWNVLIMAYGMHGKGEEALKLFRRMVEEGDNNREIRPNEV 616
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 78/271 (28%), Positives = 124/271 (45%), Gaps = 19/271 (7%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ G++ A+ LFD +D SW +I ++E + M++
Sbjct: 225 NALVTMYAKLGRVYEAKTLFDVFDDKDLVSWNTIISSLSQNDRFEEALLYLHVMLQSG-- 282
Query: 110 HMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTG-SLINFYGKFRC 167
V P + + VL AC + GK++H + S G +L++ Y +
Sbjct: 283 ----VRPNGVTLASVLPACSHLEMLGCGKEIHAFVLMNNDLIENSFVGCALVDMYCNCKQ 338
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRE-RIKKNSYTFSSVLK 226
E VF + R VW A I R ++ F EM E + NS T SSVL
Sbjct: 339 PEKGRLVFDGMFRRTIAVWNAMIAGYVRNEFDYEAIELFVEMVFELGLSPNSVTLSSVLP 398
Query: 227 AC----GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282
AC +D +G +H+ +VK G E D+YVQ L+DMY + + A +F + +
Sbjct: 399 ACVRCESFLDKEG-----IHSCVVKWGFEKDKYVQNALMDMYSRMGRIEIARSIFGSM-N 452
Query: 283 KKNIASWNAMLVGYIRNGLYVEATKFLYLMK 313
+K+I SWN M+ GY+ G + +A L+ M+
Sbjct: 453 RKDIVSWNTMITGYVVCGRHDDALNLLHDMQ 483
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 120/268 (44%), Gaps = 29/268 (10%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ G+++ AR +F M +D SW MI GYV + + + L +M + +
Sbjct: 429 NALMDMYSRMGRIEIARSIFGSMNRKDIVSWNTMITGYVVCGRHDDALNLLHDMQRGQAE 488
Query: 110 HMLLVFPAW-------------IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTG 156
H + F + ++ VL C + GK++H K S+++++
Sbjct: 489 HRINTFDDYEDNKNFPLKPNSVTLMTVLPGCAALAALGKGKEIHAYAVKQMLSKDVAVGS 548
Query: 157 SLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRE---- 212
+L++ Y K CL + VF Q+ N + W I+ G + F+ M E
Sbjct: 549 ALVDMYAKCGCLNLSRTVFEQMSVRNVITWNVLIMAYGMHGKGEEALKLFRRMVEEGDNN 608
Query: 213 -RIKKNSYTFSSV---LKACGGVDDDGNCGRQMHANIVKIGLE--SDEYVQCGLVDMYGK 266
I+ N T+ ++ L G VD+ N M A K G+E SD Y C LVD+ G+
Sbjct: 609 REIRPNEVTYIAIFASLSHSGMVDEGLNLFYTMKA---KHGIEPTSDHYA-C-LVDLLGR 663
Query: 267 CRLLRDAERVFELIVDK-KNIASWNAML 293
+ +A + + + K + +W+++L
Sbjct: 664 SGQIEEAYNLIKTMPSNMKKVDAWSSLL 691
>gi|302822082|ref|XP_002992701.1| hypothetical protein SELMODRAFT_135788 [Selaginella moellendorffii]
gi|300139547|gb|EFJ06286.1| hypothetical protein SELMODRAFT_135788 [Selaginella moellendorffii]
Length = 941
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 76/250 (30%), Positives = 123/250 (49%), Gaps = 7/250 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ CG LD AR F + R+ SW ++I V + E + L M
Sbjct: 460 NLLVQMYGRCGSLDDARAAFQGIHQRNVFSWTILISLLVQNGEASEGLELLKSMDLEGTE 519
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ F + +L AC T ++ LGK +H + G +I + +L+N Y L+
Sbjct: 520 ANKITF-----ISLLGACSVTGDLSLGKTIHERIRTKGLESDIITSNALLNMYTTCESLD 574
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
+A VF ++ + V WT I G+ + ++ M +E + ++ T SVL+AC
Sbjct: 575 EARLVFERMVFRDVVSWTIIISAYAHAGYPLEALQLYRRMEQEFSRPDAVTLISVLEACA 634
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ G+ +H IV G+E+D +V +V YGKC + DA +VF+ I+D K+I W
Sbjct: 635 SLRALVE-GKAIHERIVASGVETDVFVGTAVVSFYGKCEAVEDARQVFDRILD-KDIVCW 692
Query: 290 NAMLVGYIRN 299
NAM+ Y +N
Sbjct: 693 NAMIGAYAQN 702
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 78/295 (26%), Positives = 132/295 (44%), Gaps = 9/295 (3%)
Query: 42 IKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFA 101
+ ++L N L+ M+ CG ++ AR FD MP RD SW MI Y ++ I L+A
Sbjct: 41 LGASVLLSNSLVYMYGKCGSVEEARNAFDRMPERDLISWNAMITVYAQHECGKQAIQLYA 100
Query: 102 EMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINF 161
+ F + +L AC + +++ G+ +H + + LI+
Sbjct: 101 YSRLEGTKPDEVTFAS-----LLNACFASGDLKFGRMLHEHFLGTSFVSDQIVCNGLISM 155
Query: 162 YGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTF 221
Y L+DA VF R + WT I R G F + +M +E ++ N TF
Sbjct: 156 YSDCGSLDDATAVFEWSFRPDVCTWTTVIAAYTRHGKLECAFATWSKMHQEGLRSNEITF 215
Query: 222 SSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIV 281
+VL C ++ G+ +H + GL+ ++ L+ MYGKC D R L +
Sbjct: 216 LTVLDTCSSLEVL-ETGKHVHRLALGSGLDFSLRMENSLISMYGKCSRHPDEAREVFLRI 274
Query: 282 DKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+ ++ SW+A + Y G + EA K LM G++ + + + AC+++ A
Sbjct: 275 SRPSVISWSAFIAAY---GQHWEAIKTFELMNLEGVKPNATTLTSVLRACATVGA 326
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 84/315 (26%), Positives = 140/315 (44%), Gaps = 27/315 (8%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
+ L+ C+ D + + IR + ++ ++ N LL M+ +C LD AR +F+ M
Sbjct: 525 FISLLGACSVTGDLSLGKTIHERIRTK-GLESDIITSNALLNMYTTCESLDEARLVFERM 583
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTM 131
RD SW ++I Y E + L+ M + P A ++ VL+AC
Sbjct: 584 VFRDVVSWTIIISAYAHAGYPLEALQLYRRMEQE------FSRPDAVTLISVLEACASLR 637
Query: 132 NMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKI- 190
+ GK +H + G ++ + ++++FYGK +EDA VF ++ + V W A I
Sbjct: 638 ALVEGKAIHERIVASGVETDVFVGTAVVSFYGKCEAVEDARQVFDRILDKDIVCWNAMIG 697
Query: 191 ---VNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC----GRQMHA 243
N+C E + F + EM ++ N T ++L +C C G +H
Sbjct: 698 AYAQNHCEE----KAFALYLEMVENQMPPNDVTLITLLDSC-----SSTCKMERGSSLHR 748
Query: 244 NIVKIGLESDEYVQCGLVDMYGK-CRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
G S V L++MY K C L A+ FE + KN+ SW++++ Y RNG
Sbjct: 749 EAAARGYLSHTSVVNALINMYAKCCGNLEAAQTAFESVA-SKNVVSWSSIVAAYARNGEE 807
Query: 303 VEATKFLYLMKASGI 317
A + M G+
Sbjct: 808 DRARNLFWTMNQDGV 822
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/268 (28%), Positives = 122/268 (45%), Gaps = 11/268 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ CG LD A +F+ D +W +I Y + +++M +
Sbjct: 150 NGLISMYSDCGSLDDATAVFEWSFRPDVCTWTTVIAAYTRHGKLECAFATWSKMHQEGLR 209
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK-FRCL 168
+ F + VL C +E GK VH L G ++ + SLI+ YGK R
Sbjct: 210 SNEITF-----LTVLDTCSSLEVLETGKHVHRLALGSGLDFSLRMENSLISMYGKCSRHP 264
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
++A VF ++ R + + W+A I G + F+ M E +K N+ T +SVL+AC
Sbjct: 265 DEAREVFLRISRPSVISWSAFIA---AYGQHWEAIKTFELMNLEGVKPNATTLTSVLRAC 321
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
V GR++HA ++ + V +Y KC + DA RVF I K+ S
Sbjct: 322 ATVGAHEQ-GRRIHALVLAGPYTQNTTVLNAAASLYAKCSRVADASRVFSSI-PCKDAVS 379
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASG 316
WNA++ Y + GL+ +A M+ G
Sbjct: 380 WNAIVSAYAKQGLFRDAIFLSRQMQVEG 407
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 82/298 (27%), Positives = 136/298 (45%), Gaps = 20/298 (6%)
Query: 45 TLLFLNRLLLMHVSCGQ-LDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEM 103
+L N L+ M+ C + D AR++F + SW+ I Y + E I F E+
Sbjct: 246 SLRMENSLISMYGKCSRHPDEAREVFLRISRPSVISWSAFIAAY---GQHWEAIKTF-EL 301
Query: 104 MKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFY 162
M + V P A + VL+AC E G+++H L+ ++N ++ + + Y
Sbjct: 302 MNLEG-----VKPNATTLTSVLRACATVGAHEQGRRIHALVLAGPYTQNTTVLNAAASLY 356
Query: 163 GKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFS 222
K + DA VFS + + V W A + ++G F ++M E + TF
Sbjct: 357 AKCSRVADASRVFSSIPCKDAVSWNAIVSAYAKQGLFRDAIFLSRQMQVEGFVPDDITFI 416
Query: 223 SVLKACGG---VDDDGNC-----GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAE 274
++L +C + GN GRQ+H+ ++ GL+ D Y+ LV MYG+C L DA
Sbjct: 417 TILYSCSQSALLKQYGNSKSLTDGRQVHSQMISNGLDGDTYLGNLLVQMYGRCGSLDDAR 476
Query: 275 RVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
F+ I ++N+ SW ++ ++NG E + L M G + + L ACS
Sbjct: 477 AAFQGI-HQRNVFSWTILISLLVQNGEASEGLELLKSMDLEGTEANKITFISLLGACS 533
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 84/330 (25%), Positives = 140/330 (42%), Gaps = 13/330 (3%)
Query: 14 TCLIKECTFQKDSAGAFELLNHIRKRVNIKP---TLLFLNRLLLMHVSCGQLDTARQLFD 70
T +++ C + GA E I V P LN ++ C ++ A ++F
Sbjct: 315 TSVLRACA----TVGAHEQGRRIHALVLAGPYTQNTTVLNAAASLYAKCSRVADASRVFS 370
Query: 71 EMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVC----VLKA 126
+P +D SW ++ Y +++ I L +M + F + C +LK
Sbjct: 371 SIPCKDAVSWNAIVSAYAKQGLFRDAIFLSRQMQVEGFVPDDITFITILYSCSQSALLKQ 430
Query: 127 CVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVW 186
+ ++ G+QVH + G + L L+ YG+ L+DA F + + N W
Sbjct: 431 YGNSKSLTDGRQVHSQMISNGLDGDTYLGNLLVQMYGRCGSLDDARAAFQGIHQRNVFSW 490
Query: 187 TAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIV 246
T I + G + K M E + N TF S+L AC V D + G+ +H I
Sbjct: 491 TILISLLVQNGEASEGLELLKSMDLEGTEANKITFISLLGAC-SVTGDLSLGKTIHERIR 549
Query: 247 KIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEAT 306
GLESD L++MY C L +A VFE +V +++ SW ++ Y G +EA
Sbjct: 550 TKGLESDIITSNALLNMYTTCESLDEARLVFERMV-FRDVVSWTIIISAYAHAGYPLEAL 608
Query: 307 KFLYLMKASGIQIQESLINDLRIACSSISA 336
+ M+ + + + AC+S+ A
Sbjct: 609 QLYRRMEQEFSRPDAVTLISVLEACASLRA 638
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 92/212 (43%), Gaps = 2/212 (0%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
+ AC + GKQ+H + G ++ L+ SL+ YGK +E+A F ++ +
Sbjct: 16 AVSACAALGDSLQGKQIHARILSSGLGASVLLSNSLVYMYGKCGSVEEARNAFDRMPERD 75
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
+ W A I + Q + E K + TF+S+L AC D GR +H
Sbjct: 76 LISWNAMITVYAQHECGKQAIQLYAYSRLEGTKPDEVTFASLLNACFA-SGDLKFGRMLH 134
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
+ + SD+ V GL+ MY C L DA VFE + ++ +W ++ Y R+G
Sbjct: 135 EHFLGTSFVSDQIVCNGLISMYSDCGSLDDATAVFEWSF-RPDVCTWTTVIAAYTRHGKL 193
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIACSSI 334
A M G++ E + CSS+
Sbjct: 194 ECAFATWSKMHQEGLRSNEITFLTVLDTCSSL 225
>gi|15227724|ref|NP_178481.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206038|sp|Q9SI53.1|PP147_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g03880, mitochondrial; Flags: Precursor
gi|4582435|gb|AAD24821.1| putative selenium-binding protein [Arabidopsis thaliana]
gi|330250668|gb|AEC05762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 630
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 87/290 (30%), Positives = 138/290 (47%), Gaps = 12/290 (4%)
Query: 43 KPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAE 102
+P + +N L+ M+V L+ A QLFD+MP R+ SW MI Y +Q+ + L
Sbjct: 93 RPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVL 152
Query: 103 MMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFY 162
M++ + + + VL++C M + +H + K G ++ + +LI+ +
Sbjct: 153 MLRDNVRPNVYTYSS-----VLRSC---NGMSDVRMLHCGIIKEGLESDVFVRSALIDVF 204
Query: 163 GKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFS 222
K EDA VF ++ + +VW + I + FK M R T +
Sbjct: 205 AKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLT 264
Query: 223 SVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282
SVL+AC G+ G Q H +IVK + D + LVDMY KC L DA RVF +
Sbjct: 265 SVLRACTGL-ALLELGMQAHVHIVK--YDQDLILNNALVDMYCKCGSLEDALRVFNQM-K 320
Query: 283 KKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
++++ +W+ M+ G +NG EA K MK+SG + I + ACS
Sbjct: 321 ERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACS 370
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 106/213 (49%), Gaps = 5/213 (2%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
++K C+ + G + L+ G + L LIN Y KF L DA +F Q+ + N
Sbjct: 67 LIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRN 126
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
+ WT I + + M R+ ++ N YT+SSVL++C G+ D R +H
Sbjct: 127 VISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSD----VRMLH 182
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
I+K GLESD +V+ L+D++ K DA VF+ +V I WN+++ G+ +N
Sbjct: 183 CGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIV-WNSIIGGFAQNSRS 241
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
A + MK +G +++ + + AC+ ++
Sbjct: 242 DVALELFKRMKRAGFIAEQATLTSVLRACTGLA 274
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 106/236 (44%), Gaps = 11/236 (4%)
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI 119
G+ + A +FDEM D W +I G+ + + LF M ++ G +
Sbjct: 208 GEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRM--KRAG---FIAEQAT 262
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
+ VL+AC +ELG Q H + K +++ L +L++ Y K LEDA VF+Q+K
Sbjct: 263 LTSVLRACTGLALLELGMQAHVHIVKY--DQDLILNNALVDMYCKCGSLEDALRVFNQMK 320
Query: 180 RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--GGVDDDGNC 237
+ + W+ I + G+ + F+ M K N T VL AC G+ +DG
Sbjct: 321 ERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWY 380
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
+ + I + Y C ++D+ GK L DA ++ + + + +W +L
Sbjct: 381 YFRSMKKLYGIDPVREHY-GC-MIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLL 434
>gi|297834380|ref|XP_002885072.1| hypothetical protein ARALYDRAFT_318289 [Arabidopsis lyrata subsp.
lyrata]
gi|297330912|gb|EFH61331.1| hypothetical protein ARALYDRAFT_318289 [Arabidopsis lyrata subsp.
lyrata]
Length = 1134
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 89/288 (30%), Positives = 137/288 (47%), Gaps = 13/288 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ CG+++ A ++F M R SW MI GYV + F M + K
Sbjct: 509 NSLVDMYSKCGRINEAEKVFRWMVGRSLISWNAMIAGYVHAGYGSRALATFGMMQEAKIK 568
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLG--SSRNISLTGSLINFYGKFRC 167
F + +LKAC T + GKQ+HG L + G + ++TGSL++ Y K
Sbjct: 569 ERPDEF---TLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGN 625
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
L A F Q+K + W++ I+ +EG F + FK + + +S+ SS++
Sbjct: 626 LFSARKAFDQIKEKTMISWSSLILGYAQEGDFVEAMGLFKRLQELSSQIDSFVLSSII-- 683
Query: 228 CGGVDDDG---NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
GV D G+QM A +VK+ + V LVDMY KC L+ +AE+ F + K
Sbjct: 684 --GVFADFALLQQGKQMQALVVKLPSGLETSVSNSLVDMYLKCGLVDEAEKCFAEM-QLK 740
Query: 285 NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
++ SW M+ GY ++GL +A M I+ E + ACS
Sbjct: 741 DVISWTVMITGYGKHGLGKKAVSIFNKMLRHNIEPDEVCYLAVLSACS 788
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 81/287 (28%), Positives = 141/287 (49%), Gaps = 13/287 (4%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L+ N L+ M+ C + A ++FD MP R+ SW ++ G+V D ++LF EM +
Sbjct: 404 LITSNYLIDMYCKCREQLIAYKVFDSMPERNVVSWTALMSGHVLNGDLNGSLSLFTEMGR 463
Query: 106 RKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
+ ++P + LKAC +E G Q+HG K+G + + SL++ Y K
Sbjct: 464 QG------IYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSK 517
Query: 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKK--NSYTFS 222
+ +A+ VF + + + W A I G+ + F M +IK+ + +T +
Sbjct: 518 CGRINEAEKVFRWMVGRSLISWNAMIAGYVHAGYGSRALATFGMMQEAKIKERPDEFTLT 577
Query: 223 SVLKACGGVDDDGNCGRQMHANIVKIGL--ESDEYVQCGLVDMYGKCRLLRDAERVFELI 280
S+LKAC G+Q+H +V+ G S + LVD+Y KC L A + F+ I
Sbjct: 578 SLLKACSSTGMI-YAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGNLFSARKAFDQI 636
Query: 281 VDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDL 327
+K I SW+++++GY + G +VEA ++ QI +++ +
Sbjct: 637 KEKTMI-SWSSLILGYAQEGDFVEAMGLFKRLQELSSQIDSFVLSSI 682
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 71/193 (36%), Positives = 101/193 (52%), Gaps = 5/193 (2%)
Query: 144 FKL-GSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQV 202
F+L GS N+ + LI+ Y K R A VF + N V WTA + + G +
Sbjct: 395 FRLSGSGLNLITSNYLIDMYCKCREQLIAYKVFDSMPERNVVSWTALMSGHVLNGDLNGS 454
Query: 203 FNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVD 262
+ F EMGR+ I N +TFS+ LKACG ++ G Q+H +KIG E V LVD
Sbjct: 455 LSLFTEMGRQGIYPNEFTFSTNLKACGLLNALEK-GLQIHGFCLKIGFEMMVEVGNSLVD 513
Query: 263 MYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQ--IQ 320
MY KC + +AE+VF +V +++ SWNAM+ GY+ G A +M+ + I+
Sbjct: 514 MYSKCGRINEAEKVFRWMVG-RSLISWNAMIAGYVHAGYGSRALATFGMMQEAKIKERPD 572
Query: 321 ESLINDLRIACSS 333
E + L ACSS
Sbjct: 573 EFTLTSLLKACSS 585
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/263 (22%), Positives = 132/263 (50%), Gaps = 15/263 (5%)
Query: 36 IRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQE 95
+R + + L+ ++V CG L +AR+ FD++ + SW+ +I+GY D+ E
Sbjct: 600 VRSGFHCPSSATITGSLVDLYVKCGNLFSARKAFDQIKEKTMISWSSLILGYAQEGDFVE 659
Query: 96 CITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLT 155
+ LF + + + ++++ ++ ++ GKQ+ L+ KL S S++
Sbjct: 660 AMGLFKRLQE-----LSSQIDSFVLSSIIGVFADFALLQQGKQMQALVVKLPSGLETSVS 714
Query: 156 GSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIK 215
SL++ Y K +++A+ F++++ + + WT I + G + + F +M R I+
Sbjct: 715 NSLVDMYLKCGLVDEAEKCFAEMQLKDVISWTVMITGYGKHGLGKKAVSIFNKMLRHNIE 774
Query: 216 KNSYTFSSVLKAC---GGVDDDGNCGRQMHANIVKI-GLESD-EYVQCGLVDMYGKCRLL 270
+ + +VL AC G + + G ++ + +++ G++ E+ C +VD+ G+ L
Sbjct: 775 PDEVCYLAVLSACSHSGMIKE----GEELFSKLLETQGIKPRVEHYAC-VVDLLGRAGRL 829
Query: 271 RDAERVFELIVDKKNIASWNAML 293
++A+ + + + K N+ W +L
Sbjct: 830 KEAKHLVDTMPIKPNVGIWQTLL 852
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 81/166 (48%), Gaps = 17/166 (10%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M++ CG +D A + F EM L+D SW VMI GY ++ +++F +M++
Sbjct: 715 NSLVDMYLKCGLVDEAEKCFAEMQLKDVISWTVMITGYGKHGLGKKAVSIFNKMLRHN-- 772
Query: 110 HMLLVFPAWI-IVCVLKACVCTMNMELGKQVHG-LLFKLGSSRNISLTGSLINFYGKFRC 167
+ P + + VL AC + ++ G+++ LL G + +++ G+
Sbjct: 773 ----IEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETQGIKPRVEHYACVVDLLGRAGR 828
Query: 168 LEDADFVFSQLK-RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRE 212
L++A + + + N +W +++ CR V D E+G+E
Sbjct: 829 LKEAKHLVDTMPIKPNVGIWQT-LLSLCR------VHGDI-ELGKE 866
>gi|147834283|emb|CAN67492.1| hypothetical protein VITISV_035978 [Vitis vinifera]
Length = 814
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 87/303 (28%), Positives = 143/303 (47%), Gaps = 11/303 (3%)
Query: 16 LIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQL-DTARQLFDEMPL 74
L KE QK GA +L H K + ++ L M++ C L D + QLF+ +P
Sbjct: 219 LFKE--MQKAGVGALQLHGHALK-TDFGTDVVIGTATLDMYMKCNNLSDCSNQLFNSLPN 275
Query: 75 RDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNME 134
+ S+ +IVGY E + +F + K G + +AC
Sbjct: 276 HNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLG-----LDEVSLSGAXRACAVIKGDL 330
Query: 135 LGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNC 194
G QVHGL K NI + ++++ YGK L +A VF ++ + V W A I +
Sbjct: 331 EGLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHE 390
Query: 195 REGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDE 254
+ G+ + + F M + ++ + +T+ SVLKAC G NCG ++H I+K + D
Sbjct: 391 QNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQAL-NCGMEIHNRIIKSRMGLDS 449
Query: 255 YVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKA 314
+V L+DMY KC ++ AE++ + + + + + SWNA++ G+ EA K M
Sbjct: 450 FVGIALIDMYSKCGMMEKAEKLHDRLAE-QTVVSWNAIISGFSLQKQSEEAQKTFSKMLE 508
Query: 315 SGI 317
G+
Sbjct: 509 MGV 511
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 136/285 (47%), Gaps = 7/285 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N +L M+ CG L A +F+EM RD SW +I + + ++ ++LF M++
Sbjct: 352 NAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGME 411
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ + VLKAC + G ++H + K + + +LI+ Y K +E
Sbjct: 412 PDEFTYGS-----VLKACAGWQALNCGMEIHNRIIKSRMGLDSFVGIALIDMYSKCGMME 466
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A+ + +L V W A I + + F +M + +++T++++L C
Sbjct: 467 KAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCA 526
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ G+Q+HA I+K L+SD Y+ LVDMY KC ++D + +FE ++ +W
Sbjct: 527 NLVTV-ELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEK-APNRDFVTW 584
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
NAM+ GY ++GL EA K M+ ++ + + AC +
Sbjct: 585 NAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHM 629
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 96/395 (24%), Positives = 155/395 (39%), Gaps = 69/395 (17%)
Query: 7 PITTDMYTCLIKECTFQKDSAGAFELLNHIRK-RVNIKPTLLFLNRLLLMHVSCGQLDTA 65
P ++ + +EC+ +K + H R KPT+ N L+ M++ C L A
Sbjct: 39 PTKKKTFSHIFQECSDRKALCPGKQA--HARMILTEFKPTVFVTNCLIQMYIKCSDLGFA 96
Query: 66 RQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLF----------AEMMKRKKGHMLLVF 115
++FD MP RD SW M+ GY D LF E+ + G M VF
Sbjct: 97 FKVFDGMPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPGTGCGVVELFDFRMGRMGTVF 156
Query: 116 PAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK----------- 164
VLK+C + G Q+HGL K+G ++ +L++ Y K
Sbjct: 157 DRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCCVQNDDLRGG 216
Query: 165 ---FRCLEDA--------------DF--------------------------VFSQLKRH 181
F+ ++ A DF +F+ L H
Sbjct: 217 LELFKEMQKAGVGALQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDCSNQLFNSLPNH 276
Query: 182 NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQM 241
N + A IV R + F+ + + + + + S +AC + D G Q+
Sbjct: 277 NLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAXRACAVIKGDLE-GLQV 335
Query: 242 HANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGL 301
H +K +S+ V ++DMYGKC L +A VFE +V + + SWNA++ + +NG
Sbjct: 336 HGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAV-SWNAIIAAHEQNGN 394
Query: 302 YVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+ M SG++ E + AC+ A
Sbjct: 395 EEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQA 429
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 110/243 (45%), Gaps = 7/243 (2%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ CG ++ A +L D + + SW +I G+ +E F++M++ M
Sbjct: 455 LIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLE-----M 509
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+ + +L C + +ELGKQ+H + K + ++ +L++ Y K ++D
Sbjct: 510 GVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDF 569
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
+F + + V W A + + G + F+ M E +K N TF +VL+ACG +
Sbjct: 570 QLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHM 629
Query: 232 DDDGNCGRQMHANIVKIGLESD-EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWN 290
H+ + GL+ E+ C +VD+ G+ + A + E + + + W
Sbjct: 630 GLVEKGLHYFHSMLSNYGLDPQLEHYSC-VVDIMGRSGQVSKALELIEGMPFEADAVIWR 688
Query: 291 AML 293
+L
Sbjct: 689 TLL 691
>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Cucumis sativus]
Length = 688
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 89/331 (26%), Positives = 155/331 (46%), Gaps = 10/331 (3%)
Query: 9 TTDMYTCLIKECTFQKDSAGAFELLNHIRKRV---NIKPTLLFLNRLLLMHVSCGQLDTA 65
T+ +++ ++ + + F L HI R+ ++ LN +L + G + +
Sbjct: 8 TSPVFSKALEIKNYLSNGLNFFNQLKHIHARLLRLHLDQDNYLLNLILCCALDFGSTNYS 67
Query: 66 RQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLK 125
+ +F ++ + W MI G V + + I L+ M R G + F I VLK
Sbjct: 68 KLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSM--RGGGFLPNNF---TIPFVLK 122
Query: 126 ACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVV 185
AC +++ LG ++H LL K G ++ + SL++ Y K +DA VF + N V
Sbjct: 123 ACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVS 182
Query: 186 WTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANI 245
WTA I GHF + FK++ +K +S++ VL AC + D G + I
Sbjct: 183 WTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARL-GDCTSGEWIDRYI 241
Query: 246 VKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEA 305
G+ + +V L+DMY KC L A +F + +K+I SW+ M+ GY NGL +A
Sbjct: 242 SDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAM-PEKDIVSWSTMIQGYAFNGLPQQA 300
Query: 306 TKFLYLMKASGIQIQESLINDLRIACSSISA 336
+ M++ ++ + + AC+++ A
Sbjct: 301 LDLFFQMQSENLKPDCYTMVGVLSACATLGA 331
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 79/284 (27%), Positives = 133/284 (46%), Gaps = 13/284 (4%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL ++V C D A ++FD++P ++ SW +I GY+ ++E I F ++++ M
Sbjct: 155 LLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLE-----M 209
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
L ++ +V VL AC + G+ + + G RN+ + SL++ Y K LE A
Sbjct: 210 GLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERA 269
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--- 228
+ +FS + + V W+ I G Q + F +M E +K + YT VL AC
Sbjct: 270 NLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATL 329
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
G +D G + + + S+ + L+DMY KC + A +F + +K+
Sbjct: 330 GALD----LGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAM-KRKDRVV 384
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
WNAM+VG NG L++ GI+ E+ L C+
Sbjct: 385 WNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCT 428
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 77/248 (31%), Positives = 119/248 (47%), Gaps = 13/248 (5%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL M+V CG L+ A +F MP +D SW+ MI GY Q+ + LF +M
Sbjct: 256 LLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSEN---- 311
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
L + +V VL AC ++LG L+ + N L +LI+ Y K + A
Sbjct: 312 -LKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQA 370
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--G 229
+F+ +KR + VVW A +V GH VF+ F + + I+ + TF +L C G
Sbjct: 371 WEIFTAMKRKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHG 430
Query: 230 GVDDDGNCGRQMHANIVKIG--LESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
G ++ GRQ N+ ++ S E+ C +VD+ G+ LL +A ++ + K N
Sbjct: 431 GFVNE---GRQFFNNMKRVFSLTPSIEHYGC-MVDLLGRAGLLNEAHQLINNMPMKPNAV 486
Query: 288 SWNAMLVG 295
W A+L G
Sbjct: 487 VWGALLGG 494
>gi|410110041|gb|AFV61100.1| pentatricopeptide repeat-containing protein 81, partial [Lippia
turbinata]
Length = 391
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 80/290 (27%), Positives = 140/290 (48%), Gaps = 12/290 (4%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMP-LRDFNSWAVMIVGYVDVADYQEC-ITLFAEMMKR 106
LN + + CG ++ A+++FD RD +W M+ Y++ + +EC +F EM+++
Sbjct: 97 LNATITAYAECGCIEDAKRVFDSSDGYRDLVTWNSMLAAYLEHS-LEECGFNIFLEMVRQ 155
Query: 107 KKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF- 165
+ L A+ + V+ AC LGK +HG + K G + ++ +L++ Y K
Sbjct: 156 R-----LEMDAYTLSSVISACFEDTKQSLGKSLHGFVIKKGLDQVTQISNALVSMYLKSN 210
Query: 166 -RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
R +EDA +F + + V W + + G F+ + + + + YTF++V
Sbjct: 211 SRNVEDAFEIFEHINDKDLVSWNTILTGLSQNGLSENALRLFQNIHLDHLVTDQYTFAAV 270
Query: 225 LKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
L +C + GRQ+H +VK G E +EYV L+ MY KC ++ A FE + K+
Sbjct: 271 LXSCSDLAT-LQLGRQIHVLVVKSGFEDNEYVASALIFMYSKCGIIEYAWEXFESSL-KE 328
Query: 285 NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
+WN+++ Y ++G A YLM I++ ACS I
Sbjct: 329 TSVTWNSIIFAYAQHGQGKIALDLFYLMTERSIKLDHVTFVAAJTACSHI 378
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 79/259 (30%), Positives = 129/259 (49%), Gaps = 12/259 (4%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEM-MKRKKGHMLL 113
M+ C +++ A ++F M R+ SW +I GY ++ + Z CITLF M M+ +
Sbjct: 2 MYAKCRRVEDANKVFKYMGERNAVSWNALIGGYAEMGNLZRCITLFVGMEMEGVRVDDAT 61
Query: 114 VFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADF 173
P ++ + A + +L +Q+HG J K G ++ + I Y + C+EDA
Sbjct: 62 FAP--LLTLLYDAEL----YDLTRQLHGKJMKRGLEYENTVLNATITAYAECGCIEDAKR 115
Query: 174 VF-SQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVD 232
VF S + V W + + FN F EM R+R++ ++YT SSV+ AC D
Sbjct: 116 VFDSSDGYRDLVTWNSMLAAYLEHSLEECGFNIFLEMVRQRLEMDAYTLSSVISACFE-D 174
Query: 233 DDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGK--CRLLRDAERVFELIVDKKNIASWN 290
+ G+ +H ++K GL+ + LV MY K R + DA +FE I D K++ SWN
Sbjct: 175 TKQSLGKSLHGFVIKKGLDQVTQISNALVSMYLKSNSRNVEDAFEIFEHIND-KDLVSWN 233
Query: 291 AMLVGYIRNGLYVEATKFL 309
+L G +NGL A +
Sbjct: 234 TILTGLSQNGLSENALRLF 252
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 70/142 (49%), Gaps = 1/142 (0%)
Query: 160 NFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSY 219
+ Y K R +EDA+ VF + N V W A I G+ + F M E ++ +
Sbjct: 1 DMYAKCRRVEDANKVFKYMGERNAVSWNALIGGYAEMGNLZRCITLFVGMEMEGVRVDDA 60
Query: 220 TFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFEL 279
TF+ +L + + RQ+H J+K GLE + V + Y +C + DA+RVF+
Sbjct: 61 TFAPLLTLLYDAEL-YDLTRQLHGKJMKRGLEYENTVLNATITAYAECGCIEDAKRVFDS 119
Query: 280 IVDKKNIASWNAMLVGYIRNGL 301
+++ +WN+ML Y+ + L
Sbjct: 120 SDGYRDLVTWNSMLAAYLEHSL 141
>gi|297797117|ref|XP_002866443.1| hypothetical protein ARALYDRAFT_919404 [Arabidopsis lyrata subsp.
lyrata]
gi|297312278|gb|EFH42702.1| hypothetical protein ARALYDRAFT_919404 [Arabidopsis lyrata subsp.
lyrata]
Length = 749
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 82/295 (27%), Positives = 143/295 (48%), Gaps = 13/295 (4%)
Query: 43 KPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAE 102
K + LN+L++ + C +ARQ+FDE+P + SW V++VG + Y++ I F E
Sbjct: 95 KSLTVMLNQLVIAYSKCSDFGSARQVFDEIPQKSVFSWTVLMVGATENGFYRDGIDYFVE 154
Query: 103 MMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFY 162
++ +V + + ++AC+ ++ +G+ VH + G S + SL+ Y
Sbjct: 155 ILGCD-----IVPDEYALSAAIQACIGVDSIVVGEMVHAQVITRGFSSRTFVNTSLLGMY 209
Query: 163 GKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFS 222
K + D+ VF+ L+ N V W A I G + + +N F M E I+ N F
Sbjct: 210 AKLGRIGDSCKVFNSLENRNQVSWNAMISGFVSNGLYAEAYNSFLRMLGEEIRPNVACFI 269
Query: 223 SVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282
SV KA G + D GR ++ +IG++S+ +V L+DM+ KC + ++ VF
Sbjct: 270 SVSKAIGQLGDVEK-GRYINRIAFEIGMQSNIHVGTALIDMFAKCGCVTESWSVFVSNFS 328
Query: 283 KKNI-ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+ WNAM+ G+ +G EA M Q ++ D+ CS++++
Sbjct: 329 GCGVNLPWNAMISGFTISGHGEEAMLLFLRM------CQNNIKRDVYTYCSTLNS 377
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 74/291 (25%), Positives = 134/291 (46%), Gaps = 26/291 (8%)
Query: 33 LNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFN------SWAVMIVG 86
+N I + ++ + L+ M CG + + +F + +F+ W MI G
Sbjct: 287 INRIAFEIGMQSNIHVGTALIDMFAKCGCVTESWSVF----VSNFSGCGVNLPWNAMISG 342
Query: 87 YVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKL 146
+ +E + LF M + + + + L + ++E KQ+HG+++K
Sbjct: 343 FTISGHGEEAMLLFLRMCQNNIKRDVYTYCS-----TLNSIADMRSLEYVKQLHGMIWKS 397
Query: 147 GSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDF 206
GS +SL +L++ Y K L+ +F + N + WT + + + + F
Sbjct: 398 GSI-GVSLCNALMDAYAKCGELDAMRKLFDTWEESNQISWTTLVTAYSQSSEWEDALSVF 456
Query: 207 KEMGRERIKKNSYTFSSVLKACGGVDDDGNC----GRQMHANIVKIGLESDEYVQCGLVD 262
+M + N TFS VL +C + C G+Q+H+ K G D+ V+ L+D
Sbjct: 457 SQMREMGFQPNQVTFSGVLASCASL-----CSLEYGQQVHSLTCKTGFARDKCVESVLID 511
Query: 263 MYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMK 313
MY KC +RDA +VFE + D ++ SW AM+ GY ++G+ +A + M+
Sbjct: 512 MYAKCGSVRDAIKVFESLKD-PDVISWTAMISGYAQHGMAKDALELFRKME 561
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 118/247 (47%), Gaps = 11/247 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ + CG+LD R+LFD + SW ++ Y +++++ +++F++M +
Sbjct: 406 NALMDAYAKCGELDAMRKLFDTWEESNQISWTTLVTAYSQSSEWEDALSVFSQMREMGFQ 465
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ F VL +C ++E G+QVH L K G +R+ + LI+ Y K +
Sbjct: 466 PNQVTFSG-----VLASCASLCSLEYGQQVHSLTCKTGFARDKCVESVLIDMYAKCGSVR 520
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC- 228
DA VF LK + + WTA I + G F++M NS TF +L AC
Sbjct: 521 DAIKVFESLKDPDVISWTAMISGYAQHGMAKDALELFRKMELVLPNPNSATFLCLLFACS 580
Query: 229 -GGVDDDGNCGRQMHANIVKIGLESD-EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
GG+ D+G R H + GL + E+ C +VD+ G+ L +A + + + +
Sbjct: 581 HGGLVDEGL--RYFHLMEERYGLVPEIEHYAC-VVDILGRVGRLTEAWKFIMKMPIEPDE 637
Query: 287 ASWNAML 293
W+ +L
Sbjct: 638 KVWSTLL 644
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 72/291 (24%), Positives = 131/291 (45%), Gaps = 13/291 (4%)
Query: 48 FLNRLLL-MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR 106
F+N LL M+ G++ + ++F+ + R+ SW MI G+V Y E F M+
Sbjct: 200 FVNTSLLGMYAKLGRIGDSCKVFNSLENRNQVSWNAMISGFVSNGLYAEAYNSFLRMLGE 259
Query: 107 KKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166
+ + F + V KA ++E G+ ++ + F++G NI + +LI+ + K
Sbjct: 260 EIRPNVACF-----ISVSKAIGQLGDVEKGRYINRIAFEIGMQSNIHVGTALIDMFAKCG 314
Query: 167 CLEDADFVF-SQLKRHNT-VVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
C+ ++ VF S + W A I GH + F M + IK++ YT+ S
Sbjct: 315 CVTESWSVFVSNFSGCGVNLPWNAMISGFTISGHGEEAMLLFLRMCQNNIKRDVYTYCST 374
Query: 225 LKACGGVDDDGNCGRQMHANIVKIGLESDEYVQC-GLVDMYGKCRLLRDAERVFELIVDK 283
L + + +Q+H I K G S C L+D Y KC L ++F+ ++
Sbjct: 375 LNSIADMRSLEYV-KQLHGMIWKSG--SIGVSLCNALMDAYAKCGELDAMRKLFD-TWEE 430
Query: 284 KNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
N SW ++ Y ++ + +A M+ G Q + + + +C+S+
Sbjct: 431 SNQISWTTLVTAYSQSSEWEDALSVFSQMREMGFQPNQVTFSGVLASCASL 481
>gi|297844454|ref|XP_002890108.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297335950|gb|EFH66367.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 866
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 91/311 (29%), Positives = 150/311 (48%), Gaps = 12/311 (3%)
Query: 8 ITTDMYT--CLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTA 65
+ D+YT C+++ C D A E+ H+ R + + +N L+ M+V CG + +A
Sbjct: 192 VKPDVYTFPCVLRTCGGIPDLARGREVHVHV-VRYGYELDIDVVNALITMYVKCGDVKSA 250
Query: 66 RQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI-IVCVL 124
R LFD MP RD SW MI GY + E + LF M +G L V P + + V+
Sbjct: 251 RLLFDRMPRRDIISWNAMISGYFENGMGHEGLKLFFAM----RG--LSVDPDLMTLTSVI 304
Query: 125 KACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTV 184
AC + LG+ +H + G + +IS+ SL Y +A+ +FS++ + V
Sbjct: 305 SACELLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLYAGSWREAEKLFSRMDCKDIV 364
Query: 185 VWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHAN 244
WT I + + ++ M ++ +K + T ++VL AC + D + G ++H
Sbjct: 365 SWTTMISGYEYNFLPEKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDL-DTGVELHKL 423
Query: 245 IVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVE 304
+K L S V L++MY KC+ + A +F I +KN+ SW +++ G N E
Sbjct: 424 AIKARLISYVIVANNLINMYSKCKCIDKALDIFHNI-PRKNVISWTSIIAGLRLNNRCFE 482
Query: 305 ATKFLYLMKAS 315
A F MK +
Sbjct: 483 ALIFFRQMKMT 493
Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 85/335 (25%), Positives = 150/335 (44%), Gaps = 9/335 (2%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCG 60
M L + + D++ L++ C +++ ++ + +N ++ N L M V G
Sbjct: 85 MQELRVAVDEDVFVALVRLCEWKRAHEEGSKVYSVALSSMN-SLSVELGNAFLAMFVRFG 143
Query: 61 QLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWI 119
L A +F +M R+ SW V++ GY + E I L+ M+ V P +
Sbjct: 144 NLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAICLYHRMLWVGG-----VKPDVYT 198
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
CVL+ C ++ G++VH + + G +I + +LI Y K ++ A +F ++
Sbjct: 199 FPCVLRTCGGIPDLARGREVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRMP 258
Query: 180 RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGR 239
R + + W A I G H+ F M + + T +SV+ AC + D GR
Sbjct: 259 RRDIISWNAMISGYFENGMGHEGLKLFFAMRGLSVDPDLMTLTSVISACELLGDR-RLGR 317
Query: 240 QMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRN 299
+HA ++ G D V L MY R+AE++F + D K+I SW M+ GY N
Sbjct: 318 DIHAYVITTGFAVDISVCNSLTQMYLYAGSWREAEKLFSRM-DCKDIVSWTTMISGYEYN 376
Query: 300 GLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
L +A +M ++ E + + AC+++
Sbjct: 377 FLPEKAIDTYRMMDQDSVKPDEITVAAVLSACATL 411
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 112/222 (50%), Gaps = 9/222 (4%)
Query: 119 IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL 178
+ V +++ C E G +V+ + +S ++ L + + + +F L DA +VF ++
Sbjct: 96 VFVALVRLCEWKRAHEEGSKVYSVALSSMNSLSVELGNAFLAMFVRFGNLVDAWYVFGKM 155
Query: 179 KRHNTVVWTAKIVNNCREGHFHQVFNDFKEM-GRERIKKNSYTFSSVLKACGGVDDDGNC 237
N W + ++G+F + + M +K + YTF VL+ CGG+ D
Sbjct: 156 SERNLFSWNVLVGGYAKQGYFDEAICLYHRMLWVGGVKPDVYTFPCVLRTCGGIPDLAR- 214
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYI 297
GR++H ++V+ G E D V L+ MY KC ++ A +F+ + +++I SWNAM+ GY
Sbjct: 215 GREVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRM-PRRDIISWNAMISGYF 273
Query: 298 RNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKI 339
NG+ E K + M+ G+ + DL S ISA ++
Sbjct: 274 ENGMGHEGLKLFFAMR--GLSVDP----DLMTLTSVISACEL 309
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 117/257 (45%), Gaps = 21/257 (8%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L M++ G A +LF M +D SW MI GY ++ I + MM +
Sbjct: 336 NSLTQMYLYAGSWREAEKLFSRMDCKDIVSWTTMISGYEYNFLPEKAIDTY-RMMDQDS- 393
Query: 110 HMLLVFPAWIIVC-VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
V P I V VL AC +++ G ++H L K + + +LIN Y K +C+
Sbjct: 394 ----VKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISYVIVANNLINMYSKCKCI 449
Query: 169 EDADFVFSQLKRHNTVVWTAKIV-----NNCREGHFHQVFNDFKEMGRERIKKNSYTFSS 223
+ A +F + R N + WT+ I N C E +F +M + +
Sbjct: 450 DKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEA---LIFFRQMKMTLQPNAITLTAALA 506
Query: 224 VLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
G + CG+++HA++++ G+ D+++ L+DMY +C + A F K
Sbjct: 507 ACARIGAL----MCGKEIHAHVLRTGVGLDDFLPNALLDMYVRCGRMNIAWNQFN--SQK 560
Query: 284 KNIASWNAMLVGYIRNG 300
K+++SWN +L GY G
Sbjct: 561 KDVSSWNILLTGYSERG 577
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/248 (20%), Positives = 103/248 (41%), Gaps = 8/248 (3%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
++ N L+ M+ C +D A +F +P ++ SW +I G E + F +M
Sbjct: 433 VIVANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEALIFFRQMKM 492
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
+ + + + A + A +C GK++H + + G + L +L++ Y +
Sbjct: 493 TLQPNAITLTAALAACARIGALMC------GKEIHAHVLRTGVGLDDFLPNALLDMYVRC 546
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
+ A F+ K+ + W + G V F M + R++ + TF S+L
Sbjct: 547 GRMNIAWNQFNSQKK-DVSSWNILLTGYSERGQGSVVVELFDRMVKARVRPDEITFISLL 605
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
CG G + + + G+ + +VD+ G+ L++A + + + +
Sbjct: 606 CGCGK-SQMVRQGLMYFSKMEEYGVTPNLKHYACVVDLLGRAGELQEAHKFIQKMPVTPD 664
Query: 286 IASWNAML 293
A W A+L
Sbjct: 665 PAVWGALL 672
Score = 44.7 bits (104), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 95/226 (42%), Gaps = 27/226 (11%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N LL M+V CG+++ A F+ +D +SW +++ GY + + LF M+K +
Sbjct: 537 NALLDMYVRCGRMNIAWNQFNSQK-KDVSSWNILLTGYSERGQGSVVVELFDRMVKAR-- 593
Query: 110 HMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
V P I + +L C + + G + + G + N+ +++ G+ L
Sbjct: 594 ----VRPDEITFISLLCGCGKSQMVRQGLMYFSKMEEYGVTPNLKHYACVVDLLGRAGEL 649
Query: 169 EDA-DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERI---KKNSYTFSSV 224
++A F+ + VW A ++N CR H D E+ +RI K S + +
Sbjct: 650 QEAHKFIQKMPVTPDPAVWGA-LLNACRIHH----NIDLGELSAQRIFELDKGSVGYYIL 704
Query: 225 L----KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGK 266
L CG + R M N GL D C V++ GK
Sbjct: 705 LCNLYADCGKWREVAKVRRMMKEN----GLTVD--AGCSWVEVKGK 744
>gi|449493401|ref|XP_004159278.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g25970-like [Cucumis
sativus]
Length = 704
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 86/290 (29%), Positives = 137/290 (47%), Gaps = 11/290 (3%)
Query: 32 LLNH-IRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDV 90
LLNH + ++ + N +L + C +L +A LFDEMP+RD SW MI G+++
Sbjct: 18 LLNHSLAVKLGTIADVYTCNNILNGYWKCKELRSADVLFDEMPMRDSVSWNTMIAGHINC 77
Query: 91 ADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSR 150
+ + + M R G L + +LK LG+QVH ++ K+G +
Sbjct: 78 GNLEASWDVLRCM--RSCGFEL---DRYTFGSMLKGIAFAGMFHLGQQVHSIIIKMGYAE 132
Query: 151 NISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMG 210
N+ +L++ Y K LEDA F + +HNTV W A I + G F M
Sbjct: 133 NVYAGSALLDMYAKCEKLEDAYLSFLSISKHNTVSWNAMINGYAQAGDRETAFWLLDCME 192
Query: 211 RERIKKNSYTFSSVLKACGGVDDDGNCG--RQMHANIVKIGLESDEYVQCGLVDMYGKCR 268
+E K + T++ +L +DD C Q+H I+K GLE + L+ Y KC
Sbjct: 193 QEGEKVDDGTYAPLLPL---LDDADFCNLTSQLHGKIIKHGLELVNTMCNALITSYSKCG 249
Query: 269 LLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
L DA+R+F+ +++ +WN++L Y+ A K L M+ G +
Sbjct: 250 SLDDAKRIFDSSAGIRDLVTWNSLLAAYLLRSQEDLAFKLLIDMQEHGFE 299
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 76/288 (26%), Positives = 140/288 (48%), Gaps = 10/288 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMP-LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
N L+ + CG LD A+++FD +RD +W ++ Y+ + L +M +
Sbjct: 239 NALITSYSKCGSLDDAKRIFDSSAGIRDLVTWNSLLAAYLLRSQEDLAFKLLIDMQEHGF 298
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK--FR 166
L + + ++ AC G+ +HGL+ K G +++ ++ +LI+ Y K +
Sbjct: 299 EPDLYSYTS-----IISACFNENISNNGRSLHGLVIKRGFEQSVPISNALISMYLKSDYG 353
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
+++A +F L+ + V W + + + G F M + + Y+FS+VL+
Sbjct: 354 SMKEALCIFESLEFKDRVSWNSILTGLSQTGSSEDAVKSFLHMRSAAMDIDHYSFSAVLR 413
Query: 227 ACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
+C + G+Q+H +K GLES+E+V L+ MY KC ++ DA R FE +I
Sbjct: 414 SCSDLAT-FQLGQQIHVLALKYGLESNEFVSSSLIFMYSKCGIIEDARRSFEEASKNSSI 472
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
+WNA++ GY ++G A +LM+ +++ + ACS I
Sbjct: 473 -TWNALMFGYAQHGQCNVALDLFFLMEXKKVKMDHITFVAVLTACSHI 519
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 93/184 (50%), Gaps = 6/184 (3%)
Query: 140 HGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHF 199
H L KLG+ ++ +++N Y K + L AD +F ++ ++V W I + G+
Sbjct: 21 HSLAVKLGTIADVYTCNNILNGYWKCKELRSADVLFDEMPMRDSVSWNTMIAGHINCGNL 80
Query: 200 HQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDG--NCGRQMHANIVKIGLESDEYVQ 257
++ + M + + YTF S+LK G+ G + G+Q+H+ I+K+G + Y
Sbjct: 81 EASWDVLRCMRSCGFELDRYTFGSMLK---GIAFAGMFHLGQQVHSIIIKMGYAENVYAG 137
Query: 258 CGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGI 317
L+DMY KC L DA F L + K N SWNAM+ GY + G A L M+ G
Sbjct: 138 SALLDMYAKCEKLEDAYLSF-LSISKHNTVSWNAMINGYAQAGDRETAFWLLDCMEQEGE 196
Query: 318 QIQE 321
++ +
Sbjct: 197 KVDD 200
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 72/296 (24%), Positives = 125/296 (42%), Gaps = 34/296 (11%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSC--GQLDTARQLFD 70
YT +I C + S L + KR + ++ N L+ M++ G + A +F+
Sbjct: 305 YTSIISACFNENISNNGRSLHGLVIKR-GFEQSVPISNALISMYLKSDYGSMKEALCIFE 363
Query: 71 EMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCT 130
+ +D SW ++ G ++ + F M F A VL++C
Sbjct: 364 SLEFKDRVSWNSILTGLSQTGSSEDAVKSFLHMRSAAMDIDHYSFSA-----VLRSCSDL 418
Query: 131 MNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKI 190
+LG+Q+H L K G N ++ SLI Y K +EDA F + +++++ W A +
Sbjct: 419 ATFQLGQQIHVLALKYGLESNEFVSSSLIFMYSKCGIIEDARRSFEEASKNSSITWNALM 478
Query: 191 VNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIG- 249
+ G + + F M +++K + TF +VL AC H +V+ G
Sbjct: 479 FGYAQHGQCNVALDLFFLMEXKKVKMDHITFVAVLTACS------------HIGLVEQGC 526
Query: 250 -----LESD-------EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
+ESD E+ C VD+YG+ L +A+ + E + K + W L
Sbjct: 527 KFLRCMESDYGVPPRMEHYACA-VDLYGRSGRLEEAKALIEEMPFKPDTTVWKTFL 581
>gi|225454363|ref|XP_002276073.1| PREDICTED: pentatricopeptide repeat-containing protein At2g46050,
mitochondrial [Vitis vinifera]
Length = 673
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 87/314 (27%), Positives = 159/314 (50%), Gaps = 10/314 (3%)
Query: 28 GAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGY 87
G +L H+ K N L N++L ++V C + + ++FDEMPL++ SW +I G
Sbjct: 91 GGKQLHAHVIKLGNCN-LLSLQNQVLHVYVKCKEFNDVCKMFDEMPLKNVVSWNTLICGV 149
Query: 88 VDVADYQECITLFAEMMKRKKGHMLLVFPAWIIV-CVLKACVCTMNMELGKQVHGLLFKL 146
V+ + L ++ M+ P I + +L+A + ++ + +Q+H + K
Sbjct: 150 VEGNCKFALVRLGFHYFRQMVLEMMA--PNCITLNGLLRASIELNDVGICRQLHCFILKS 207
Query: 147 GSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDF 206
G N + +L++ Y KF +++A F ++ + V+W + G + F F
Sbjct: 208 GFDSNCFVGSALVDSYAKFGLVDEAQSAFDEVSSRDLVLWNVMVSCYALNGVQGKAFGVF 267
Query: 207 KEMGRERIKKNSYTFSSVLKACGGVDDDGNC--GRQMHANIVKIGLESDEYVQCGLVDMY 264
K M E +K +++TF+S++ +CG + G+C G+Q+H I+++ + D V LVDMY
Sbjct: 268 KLMRLEGVKGDNFTFTSMINSCGVL---GSCGLGKQVHGLIIRLSFDLDVLVASALVDMY 324
Query: 265 GKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLI 324
K + DA + F+ ++ KNI SW M+VGY ++G EA + L M E +
Sbjct: 325 SKNENIEDARKAFDGMI-VKNIVSWTTMIVGYGQHGDGKEAMRLLQEMIRVYTYPDELAL 383
Query: 325 NDLRIACSSISASK 338
+ +C ++SA+
Sbjct: 384 ASILSSCGNLSATS 397
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 76/275 (27%), Positives = 124/275 (45%), Gaps = 11/275 (4%)
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEM-MKRKKGHMLLVFPAW 118
G +D A+ FDE+ RD W VM+ Y + +F M ++ KG F +
Sbjct: 227 GLVDEAQSAFDEVSSRDLVLWNVMVSCYALNGVQGKAFGVFKLMRLEGVKGDNF-TFTSM 285
Query: 119 IIVC-VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQ 177
I C VL +C LGKQVHGL+ +L ++ + +L++ Y K +EDA F
Sbjct: 286 INSCGVLGSC------GLGKQVHGLIIRLSFDLDVLVASALVDMYSKNENIEDARKAFDG 339
Query: 178 LKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC 237
+ N V WT IV + G + +EM R + +S+L +CG +
Sbjct: 340 MIVKNIVSWTTMIVGYGQHGDGKEAMRLLQEMIRVYTYPDELALASILSSCGNLSATSEV 399
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYI 297
Q+HA +V+ G E+ + LV Y KC + A + F + + +I SW +++ Y
Sbjct: 400 -VQVHAYVVENGFEAFLSIANALVSAYSKCGSIGSAFQSFSSVAE-PDIISWTSLMGAYA 457
Query: 298 RNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+GL E + M S ++ + + AC+
Sbjct: 458 FHGLSKEGVEVFEKMLFSNVRPDKVAFLGVLSACA 492
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 62/264 (23%), Positives = 120/264 (45%), Gaps = 12/264 (4%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
+T +I C S G + ++ + R++ +L + L+ M+ ++ AR+ FD M
Sbjct: 282 FTSMINSCGVL-GSCGLGKQVHGLIIRLSFDLDVLVASALVDMYSKNENIEDARKAFDGM 340
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI-IVCVLKACVCTM 131
+++ SW MIVGY D +E + L EM++ + +P + + +L +C
Sbjct: 341 IVKNIVSWTTMIVGYGQHGDGKEAMRLLQEMIR------VYTYPDELALASILSSCGNLS 394
Query: 132 NMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIV 191
QVH + + G +S+ +L++ Y K + A FS + + + WT+ +
Sbjct: 395 ATSEVVQVHAYVVENGFEAFLSIANALVSAYSKCGSIGSAFQSFSSVAEPDIISWTSLMG 454
Query: 192 NNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--GGVDDDGNCGRQMHANIVKIG 249
G + F++M ++ + F VL AC GG +G + N+ +I
Sbjct: 455 AYAFHGLSKEGVEVFEKMLFSNVRPDKVAFLGVLSACAHGGFVLEGLHYFNLMINVYQIM 514
Query: 250 LESDEYVQCGLVDMYGKCRLLRDA 273
+S+ Y C ++D+ G+ L +A
Sbjct: 515 PDSEHYT-C-IIDLLGRAGFLDEA 536
>gi|449442142|ref|XP_004138841.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g25970-like [Cucumis sativus]
Length = 704
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 86/290 (29%), Positives = 137/290 (47%), Gaps = 11/290 (3%)
Query: 32 LLNH-IRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDV 90
LLNH + ++ + N +L + C +L +A LFDEMP+RD SW MI G+++
Sbjct: 18 LLNHSLAVKLGTIADVYTCNNILNGYWKCKELRSADVLFDEMPMRDSVSWNTMIAGHINC 77
Query: 91 ADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSR 150
+ + + M R G L + +LK LG+QVH ++ K+G +
Sbjct: 78 GNLEASWDVLRCM--RSCGFEL---DRYTFGSMLKGIAFAGMFHLGQQVHSIIIKMGYAE 132
Query: 151 NISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMG 210
N+ +L++ Y K LEDA F + +HNTV W A I + G F M
Sbjct: 133 NVYAGSALLDMYAKCEKLEDAYLSFLSISKHNTVSWNAMINGYAQAGDRETAFWLLDCME 192
Query: 211 RERIKKNSYTFSSVLKACGGVDDDGNCG--RQMHANIVKIGLESDEYVQCGLVDMYGKCR 268
+E K + T++ +L +DD C Q+H I+K GLE + L+ Y KC
Sbjct: 193 QEGEKVDDGTYAPLLPL---LDDADFCNLTSQLHGKIIKHGLELVNTMCNALITSYSKCG 249
Query: 269 LLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
L DA+R+F+ +++ +WN++L Y+ A K L M+ G +
Sbjct: 250 SLDDAKRIFDSSAGIRDLVTWNSLLAAYLLRSQEDLAFKLLIDMQEHGFE 299
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 76/288 (26%), Positives = 140/288 (48%), Gaps = 10/288 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMP-LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
N L+ + CG LD A+++FD +RD +W ++ Y+ + L +M +
Sbjct: 239 NALITSYSKCGSLDDAKRIFDSSAGIRDLVTWNSLLAAYLLRSQEDLAFKLLIDMQEHGF 298
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK--FR 166
L + + ++ AC G+ +HGL+ K G +++ ++ +LI+ Y K +
Sbjct: 299 EPDLYSYTS-----IISACFNENISNNGRSLHGLVIKRGFEQSVPISNALISMYLKSDYG 353
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
+++A +F L+ + V W + + + G F M + + Y+FS+VL+
Sbjct: 354 SMKEALCIFESLEFKDRVSWNSILTGLSQTGSSEDAVKSFLHMRSAAMDIDHYSFSAVLR 413
Query: 227 ACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
+C + G+Q+H +K GLES+E+V L+ MY KC ++ DA R FE +I
Sbjct: 414 SCSDLAT-FQLGQQIHVLALKYGLESNEFVSSSLIFMYSKCGIIEDARRSFEEASKNSSI 472
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
+WNA++ GY ++G A +LM+ +++ + ACS I
Sbjct: 473 -TWNALMFGYAQHGQCNVALDLFFLMEEKKVKMDHITFVAVLTACSHI 519
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 93/184 (50%), Gaps = 6/184 (3%)
Query: 140 HGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHF 199
H L KLG+ ++ +++N Y K + L AD +F ++ ++V W I + G+
Sbjct: 21 HSLAVKLGTIADVYTCNNILNGYWKCKELRSADVLFDEMPMRDSVSWNTMIAGHINCGNL 80
Query: 200 HQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDG--NCGRQMHANIVKIGLESDEYVQ 257
++ + M + + YTF S+LK G+ G + G+Q+H+ I+K+G + Y
Sbjct: 81 EASWDVLRCMRSCGFELDRYTFGSMLK---GIAFAGMFHLGQQVHSIIIKMGYAENVYAG 137
Query: 258 CGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGI 317
L+DMY KC L DA F L + K N SWNAM+ GY + G A L M+ G
Sbjct: 138 SALLDMYAKCEKLEDAYLSF-LSISKHNTVSWNAMINGYAQAGDRETAFWLLDCMEQEGE 196
Query: 318 QIQE 321
++ +
Sbjct: 197 KVDD 200
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/296 (24%), Positives = 125/296 (42%), Gaps = 34/296 (11%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSC--GQLDTARQLFD 70
YT +I C + S L + KR + ++ N L+ M++ G + A +F+
Sbjct: 305 YTSIISACFNENISNNGRSLHGLVIKR-GFEQSVPISNALISMYLKSDYGSMKEALCIFE 363
Query: 71 EMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCT 130
+ +D SW ++ G ++ + F M F A VL++C
Sbjct: 364 SLEFKDRVSWNSILTGLSQTGSSEDAVKSFLHMRSAAMDIDHYSFSA-----VLRSCSDL 418
Query: 131 MNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKI 190
+LG+Q+H L K G N ++ SLI Y K +EDA F + +++++ W A +
Sbjct: 419 ATFQLGQQIHVLALKYGLESNEFVSSSLIFMYSKCGIIEDARRSFEEASKNSSITWNALM 478
Query: 191 VNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIG- 249
+ G + + F M +++K + TF +VL AC H +V+ G
Sbjct: 479 FGYAQHGQCNVALDLFFLMEEKKVKMDHITFVAVLTACS------------HIGLVEQGC 526
Query: 250 -----LESD-------EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
+ESD E+ C VD+YG+ L +A+ + E + K + W L
Sbjct: 527 KFLRCMESDYGVPPRMEHYACA-VDLYGRSGRLEEAKALIEEMPFKPDTTVWKTFL 581
>gi|218195864|gb|EEC78291.1| hypothetical protein OsI_18005 [Oryza sativa Indica Group]
Length = 690
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 83/281 (29%), Positives = 137/281 (48%), Gaps = 12/281 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ CG+L A ++FD MP R+ SW ++VG++ + +EC+ LF EM R G
Sbjct: 43 NNLIDMYAKCGKLHMAGEVFDGMPERNVVSWTALMVGFLHHGEARECLRLFGEM--RGSG 100
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
F + LKA C G Q+HG+ + G + + SL+ Y K R
Sbjct: 101 TSPNEF---TLSATLKA--CGGGTRAGVQIHGVCVRTGFEGHDVVANSLVVMYSKGRWTG 155
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKK-NSYTFSSVLKAC 228
DA VF + N W + I G F+EM R ++ + +TF+S+LKAC
Sbjct: 156 DARRVFDVIPSRNLATWNSMISGYAHAGQGRDSLLVFREMQRRHDEQPDEFTFASLLKAC 215
Query: 229 GGVDDDGNCGRQMHANIVKIGLE--SDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
G+ G Q+HA + G+ S+ + L+D+Y KC L A +VF+ + +++N
Sbjct: 216 SGL-GAAREGAQVHAAMAVRGVSPASNAILAGALLDVYVKCHRLPVAMQVFDGL-ERRNA 273
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDL 327
W ++VG+ + G EA +SG++ +++ +
Sbjct: 274 IQWTTVIVGHAQEGQVKEAMCLFRRFWSSGVRADGHVLSSV 314
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 87/299 (29%), Positives = 132/299 (44%), Gaps = 14/299 (4%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R + + N L++M+ AR++FD +P R+ +W MI GY ++ +
Sbjct: 131 RTGFEGHDVVANSLVVMYSKGRWTGDARRVFDVIPSRNLATWNSMISGYAHAGQGRDSLL 190
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSS--RNISLTG 156
+F EM +R + +LKAC G QVH + G S N L G
Sbjct: 191 VFREMQRRHDEQP----DEFTFASLLKACSGLGAAREGAQVHAAMAVRGVSPASNAILAG 246
Query: 157 SLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKK 216
+L++ Y K L A VF L+R N + WT IV + +EG + F+ ++
Sbjct: 247 ALLDVYVKCHRLPVAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEAMCLFRRFWSSGVRA 306
Query: 217 NSYTFSSVLKACGG---VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDA 273
+ + SSV+ V+ G+Q+H K D V LVDMY KC L +A
Sbjct: 307 DGHVLSSVVAVFADFALVEQ----GKQVHCYTAKTPAGLDVSVANSLVDMYLKCGLTGEA 362
Query: 274 ERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
R F + +N+ SW AM+ G ++G EA M+A G++ E L ACS
Sbjct: 363 GRRFREM-PARNVVSWTAMINGVGKHGHGREAIDLFEEMQAEGVEADEVAYLALLSACS 420
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 72/221 (32%), Positives = 104/221 (47%), Gaps = 5/221 (2%)
Query: 119 IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL 178
+I +L+A ++ G Q+H L KLG + L +LI+ Y K L A VF +
Sbjct: 6 MIADLLRASARGSSLRGGVQLHAALMKLGFGSDTMLNNNLIDMYAKCGKLHMAGEVFDGM 65
Query: 179 KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCG 238
N V WTA +V G + F EM N +T S+ LKACGG G
Sbjct: 66 PERNVVSWTALMVGFLHHGEARECLRLFGEMRGSGTSPNEFTLSATLKACGG---GTRAG 122
Query: 239 RQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIR 298
Q+H V+ G E + V LV MY K R DA RVF+ ++ +N+A+WN+M+ GY
Sbjct: 123 VQIHGVCVRTGFEGHDVVANSLVVMYSKGRWTGDARRVFD-VIPSRNLATWNSMISGYAH 181
Query: 299 NGLYVEA-TKFLYLMKASGIQIQESLINDLRIACSSISASK 338
G ++ F + + Q E L ACS + A++
Sbjct: 182 AGQGRDSLLVFREMQRRHDEQPDEFTFASLLKACSGLGAAR 222
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 119/266 (44%), Gaps = 29/266 (10%)
Query: 40 VNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITL 99
V+ + LL ++V C +L A Q+FD + R+ W +IVG+ +E + L
Sbjct: 236 VSPASNAILAGALLDVYVKCHRLPVAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEAMCL 295
Query: 100 FAEMMK---RKKGHML----LVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNI 152
F R GH+L VF + +V E GKQVH K + ++
Sbjct: 296 FRRFWSSGVRADGHVLSSVVAVFADFALV------------EQGKQVHCYTAKTPAGLDV 343
Query: 153 SLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRE 212
S+ SL++ Y K +A F ++ N V WTA I + GH + + F+EM E
Sbjct: 344 SVANSLVDMYLKCGLTGEAGRRFREMPARNVVSWTAMINGVGKHGHGREAIDLFEEMQAE 403
Query: 213 RIKKNSYTFSSVLKAC---GGVDDDGNCGRQMHANIV--KIGLESDEYVQCGLVDMYGKC 267
++ + + ++L AC G VD+ C R+ + I + E+ C +VD+ G+
Sbjct: 404 GVEADEVAYLALLSACSHSGLVDE---C-RRYFSRICQDRRMRPKAEHYAC-MVDLLGRA 458
Query: 268 RLLRDAERVFELIVDKKNIASWNAML 293
LR+A+ + + + + W +L
Sbjct: 459 GELREAKELILSMPMEPTVGVWQTLL 484
>gi|347954466|gb|AEP33733.1| chlororespiratory reduction 21, partial [Lepidium sativum]
Length = 805
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/259 (31%), Positives = 129/259 (49%), Gaps = 9/259 (3%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+ CG LD AR +FDE+P R+ +W ++VGYV +E I L ++M RK+G +
Sbjct: 195 MYGKCGVLDDARMVFDEIPERNVVAWNALMVGYVQNGMNEEAIRLLSDM--RKEG----I 248
Query: 115 FPAWIIVCV-LKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADF 173
P + V L A +E GKQ H + G + L S++NFY K +E A+
Sbjct: 249 EPTRVTVSTCLSASANMGGIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIEYAEM 308
Query: 174 VFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDD 233
+F ++ + V W I ++G K M E ++ +S T S+++ A +
Sbjct: 309 IFDRIIGKDIVTWNLLISGYVQQGLVDDAMYMCKLMRLENLRYDSVTLSTLMSAAARTQN 368
Query: 234 DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
N G+++ ++ ES+ + VDMY KC + DA++VFE + K++ WN +L
Sbjct: 369 L-NLGKEVQCYSIRHSFESEIVLASSTVDMYAKCGSIVDAKKVFESTAE-KDLILWNTLL 426
Query: 294 VGYIRNGLYVEATKFLYLM 312
Y +GL EA K Y M
Sbjct: 427 AAYADSGLSGEALKLFYDM 445
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 88/337 (26%), Positives = 159/337 (47%), Gaps = 16/337 (4%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFL-NRLLLMHVSC 59
MD + I ++Y +++ C +++D ++ I K ++ +LL+ + C
Sbjct: 39 MDFRNVRIGPEIYGEILQGCVYERDLCTGQQIHARILKNGAFYARNEYIETKLLIFYAKC 98
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AW 118
L+ A+ LF + +R+ SWA +I + + + F EM++ V P +
Sbjct: 99 DALEVAQDLFSRLRVRNVFSWAAIIGLKCRIGLCEGALLGFVEMLENG------VLPDNY 152
Query: 119 IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL 178
++ V KAC G+ VHG + K G + + SL + YGK L+DA VF ++
Sbjct: 153 VVPNVCKACGALHWSWFGRGVHGYVLKAGLHDCVFVASSLADMYGKCGVLDDARMVFDEI 212
Query: 179 KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC---GGVDDDG 235
N V W A +V + G + +M +E I+ T S+ L A GG+++
Sbjct: 213 PERNVVAWNALMVGYVQNGMNEEAIRLLSDMRKEGIEPTRVTVSTCLSASANMGGIEE-- 270
Query: 236 NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
G+Q HA + GLE D + +++ Y K L+ AE +F+ I+ K+I +WN ++ G
Sbjct: 271 --GKQSHAIAIVNGLELDNILGTSILNFYCKVGLIEYAEMIFDRIIG-KDIVTWNLLISG 327
Query: 296 YIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
Y++ GL +A LM+ ++ ++ L A +
Sbjct: 328 YVQQGLVDDAMYMCKLMRLENLRYDSVTLSTLMSAAA 364
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 93/203 (45%), Gaps = 20/203 (9%)
Query: 41 NIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMP----LRDFNSWAVMIVGYVDVADYQEC 96
++ P ++ N ++L + GQ+D A+++F +M + SW M+ G+V +E
Sbjct: 449 SVPPNIITWNSIILSFLRNGQVDEAKEMFLQMQSSGIFPNLISWTTMMNGWVQNGCSEEA 508
Query: 97 ITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFK-LGSSRNISLT 155
I +M + L A+ I L AC +++ G+ +HG + + S ++S
Sbjct: 509 IIFLRKMQESG-----LRPNAFTISVALSACTHLVSLNFGRSIHGYIIRNFQHSSSVSFE 563
Query: 156 GSLINFYGKFRCLEDADFVFS-----QLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMG 210
SL++ Y K + A+ VF +L HN ++ + N +E ++ +
Sbjct: 564 TSLVDLYAKCGDINQAEKVFGNKLYDELPLHNAMISAYALYGNVKES-----ITLYRRLE 618
Query: 211 RERIKKNSYTFSSVLKACGGVDD 233
+K ++ TF+S+L AC D
Sbjct: 619 DMAMKPDNITFTSLLYACTHAGD 641
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/283 (20%), Positives = 116/283 (40%), Gaps = 38/283 (13%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
+L + G ++ A +FD + +D +W ++I GYV + + + ++M+ +
Sbjct: 293 ILNFYCKVGLIEYAEMIFDRIIGKDIVTWNLLISGYVQQGLVDDAMYM-CKLMRLEN--- 348
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
L + + + ++ A T N+ LGK+V + I L S ++ Y K + DA
Sbjct: 349 -LRYDSVTLSTLMSAAARTQNLNLGKEVQCYSIRHSFESEIVLASSTVDMYAKCGSIVDA 407
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
VF + ++W + G + F +M E + N T++S++ +
Sbjct: 408 KKVFESTAEKDLILWNTLLAAYADSGLSGEALKLFYDMLLESVPPNIITWNSIILS---- 463
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
+++ G VD + L + +F N+ SW
Sbjct: 464 -----------------------FLRNGQVDEAKEMFLQMQSSGIF------PNLISWTT 494
Query: 292 MLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
M+ G+++NG EA FL M+ SG++ I+ AC+ +
Sbjct: 495 MMNGWVQNGCSEEAIIFLRKMQESGLRPNAFTISVALSACTHL 537
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 50/244 (20%), Positives = 95/244 (38%), Gaps = 46/244 (18%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R + + ++ + + M+ CG + A+++F+ +D W ++ Y D E +
Sbjct: 381 RHSFESEIVLASSTVDMYAKCGSIVDAKKVFESTAEKDLILWNTLLAAYADSGLSGEALK 440
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
LF +M+ V P NI S+
Sbjct: 441 LFYDMLLES------VPP----------------------------------NIITWNSI 460
Query: 159 INFYGKFRCLEDADFVFSQLKRH----NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERI 214
I + + +++A +F Q++ N + WT + + G + ++M +
Sbjct: 461 ILSFLRNGQVDEAKEMFLQMQSSGIFPNLISWTTMMNGWVQNGCSEEAIIFLRKMQESGL 520
Query: 215 KKNSYTFSSVLKACGGVDDDGNCGRQMHANIVK-IGLESDEYVQCGLVDMYGKCRLLRDA 273
+ N++T S L AC + N GR +H I++ S + LVD+Y KC + A
Sbjct: 521 RPNAFTISVALSACTHLVSL-NFGRSIHGYIIRNFQHSSSVSFETSLVDLYAKCGDINQA 579
Query: 274 ERVF 277
E+VF
Sbjct: 580 EKVF 583
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 70/151 (46%), Gaps = 4/151 (2%)
Query: 189 KIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKI 248
+I + C+ G + KEM ++ + +L+ C + D G+Q+HA I+K
Sbjct: 19 QISSLCKHGEIREALRLVKEMDFRNVRIGPEIYGEILQGC-VYERDLCTGQQIHARILKN 77
Query: 249 G--LESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEAT 306
G +EY++ L+ Y KC L A+ +F + +N+ SW A++ R GL A
Sbjct: 78 GAFYARNEYIETKLLIFYAKCDALEVAQDLFSRL-RVRNVFSWAAIIGLKCRIGLCEGAL 136
Query: 307 KFLYLMKASGIQIQESLINDLRIACSSISAS 337
M +G+ ++ ++ AC ++ S
Sbjct: 137 LGFVEMLENGVLPDNYVVPNVCKACGALHWS 167
>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 766
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 83/283 (29%), Positives = 137/283 (48%), Gaps = 15/283 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N ++ + G+L A++LF+E P+RD +W M+ GYV E +F M ++
Sbjct: 239 NTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNS- 297
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+W ++ V M+ ++ LF+ +N+S ++I Y + +
Sbjct: 298 ------VSW--NAIIAGYVQCKRMDQARE----LFEAMPCQNVSSWNTMITGYAQNGDIA 345
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A F ++ + +++ W A I + G+ + + F EM R+ + N TF+S L C
Sbjct: 346 QARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCA 405
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ G+Q+H +VK GLES YV L+ MY KC + DA VFE I ++K + SW
Sbjct: 406 EIAAL-ELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGI-EEKEVVSW 463
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
N M+ GY R+G EA MK +GI + + + ACS
Sbjct: 464 NTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACS 506
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 108/246 (43%), Gaps = 9/246 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N ++ + G + AR FD MP RD SWA +I GY +E + LF EM ++ G
Sbjct: 332 NTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEM--KRDG 389
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
L L C +ELGKQVHG + K G + +L+ Y K ++
Sbjct: 390 ERLNRS---TFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNID 446
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
DA VF ++ V W I R G + F+ M + I + T VL AC
Sbjct: 447 DAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACS 506
Query: 230 --GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
G+ D G ++ G+ ++ ++D+ G+ L DA+ + + + + + A
Sbjct: 507 HTGLVDKGT--EYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAA 564
Query: 288 SWNAML 293
+W A+L
Sbjct: 565 TWGALL 570
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 57/252 (22%), Positives = 106/252 (42%), Gaps = 23/252 (9%)
Query: 56 HVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVF 115
H+ GQ D+A +LF+ MP R SW MI G + + LF +M R
Sbjct: 59 HMRNGQCDSALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQLFEKMPTRD-------L 111
Query: 116 PAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVF 175
+W + ++ CV N+ + LLF R++ ++++ Y + +++A +F
Sbjct: 112 VSWNV--MISGCVRYRNLRAAR----LLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIF 165
Query: 176 SQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDG 235
++ N++ W + + G F+ + + +K VD G
Sbjct: 166 DEMPCKNSISWNGMLAAYVQNGRIEDARRLFESKADWELISWNCMMGGYVKRNRLVDARG 225
Query: 236 NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
R E DE ++ Y + L +A+R+FE +++ +W AM+ G
Sbjct: 226 IFDRM---------PERDEVSWNTMISGYAQNGELLEAQRLFEE-SPVRDVFTWTAMVSG 275
Query: 296 YIRNGLYVEATK 307
Y++NG+ EA +
Sbjct: 276 YVQNGMLDEARR 287
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 63/253 (24%), Positives = 108/253 (42%), Gaps = 25/253 (9%)
Query: 62 LDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIV 121
L AR LFD+MP RD SW M+ GY +E +F EM + +W
Sbjct: 127 LRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNS-------ISW--N 177
Query: 122 CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH 181
+L A V +E ++ LF+ + + ++ Y K L DA +F ++
Sbjct: 178 GMLAAYVQNGRIEDARR----LFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPER 233
Query: 182 NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQM 241
+ V W I + G + F+ E ++ +T+++++ G V + G
Sbjct: 234 DEVSWNTMISGYAQNGELLEAQRLFE----ESPVRDVFTWTAMV--SGYVQN----GMLD 283
Query: 242 HANIVKIGLESDEYVQC-GLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
A V G+ V ++ Y +C+ + A +FE + +N++SWN M+ GY +NG
Sbjct: 284 EARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAM-PCQNVSSWNTMITGYAQNG 342
Query: 301 LYVEATKFLYLMK 313
+A F M
Sbjct: 343 DIAQARNFFDRMP 355
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 66/327 (20%), Positives = 133/327 (40%), Gaps = 34/327 (10%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
+ +I C ++ A L + + +R ++ N +L + G + A+++FDEM
Sbjct: 114 WNVMISGCVRYRNLRAARLLFDQMPER-----DVVSWNAMLSGYAQNGYVKEAKEIFDEM 168
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN 132
P ++ SW M+ YV ++ LF K L+ +W C++ V
Sbjct: 169 PCKNSISWNGMLAAYVQNGRIEDARRLF-----ESKADWELI--SW--NCMMGGYVKRNR 219
Query: 133 MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192
+ G+ ++ +S ++I+ Y + L +A +F + + WTA +
Sbjct: 220 L---VDARGIFDRMPERDEVSWN-TMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSG 275
Query: 193 NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA---CGGVDDDGNCGRQMHANIVKIG 249
+ G + F M +KNS ++++++ C +D R++ +
Sbjct: 276 YVQNGMLDEARRVFDGM----PEKNSVSWNAIIAGYVQCKRMDQ----ARELFEAMPCQN 327
Query: 250 LESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFL 309
+ S + G Y + + A F+ + + +I SW A++ GY ++G EA
Sbjct: 328 VSSWNTMITG----YAQNGDIAQARNFFDRMPQRDSI-SWAAIIAGYAQSGYGEEALHLF 382
Query: 310 YLMKASGIQIQESLINDLRIACSSISA 336
MK G ++ S C+ I+A
Sbjct: 383 VEMKRDGERLNRSTFTSTLSTCAEIAA 409
>gi|255569403|ref|XP_002525669.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535105|gb|EEF36787.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 494
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 85/284 (29%), Positives = 134/284 (47%), Gaps = 9/284 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N LL M+V GQ+ AR LFD M + SW +I GYVD + +E +LF +M +
Sbjct: 187 NALLNMYVKHGQVHEARTLFDMMHEKSLISWTTVIGGYVDFGNVREAFSLFNQM----RI 242
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
M L F + + ++ C N+ L VH LL K G + L+ Y K L
Sbjct: 243 SMRLDF--IVFITLISGCAREGNLLLASSVHSLLVKYGCDDKDPIDNLLVTMYSKCGDLI 300
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A F + + +WT+ I G+ Q F + IK N T +++L AC
Sbjct: 301 SAQRAFDIAREKSLYLWTSMIAAYTHLGYPVQALRLFNTLLGTAIKPNEATLATILSACA 360
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ + G ++ I+ GL S VQ L+ M+ +C L A+ VFE + K++A+W
Sbjct: 361 DLGSL-SMGEEIEEYILANGLHSSVQVQTSLIHMFCRCGSLEKAKAVFERLA-TKDLAAW 418
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKA-SGIQIQESLINDLRIACS 332
++M+ GY +G+ EA + M+ GI+ + + +ACS
Sbjct: 419 SSMINGYAIHGMAEEAFSLFHKMQTVEGIKPDAVIYTSILLACS 462
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 76/290 (26%), Positives = 135/290 (46%), Gaps = 14/290 (4%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
+ LL M+ C L ++R++FDEMP+R SW +I Y E I++ +M R
Sbjct: 87 MTTLLDMYSKCYDLASSRKVFDEMPMRSTVSWNSIISAYCRFFLVDEAISMLQKM--RLI 144
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
G V + +C L +C + L Q F L +I LT +L+N Y K +
Sbjct: 145 G---FVPTSTTFLCFLP--ICLLQHGLSIQCCAFKFGLLEGSDIPLTNALLNMYVKHGQV 199
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+A +F + + + WT I G+ + F+ F +M R ++ + F +++ C
Sbjct: 200 HEARTLFDMMHEKSLISWTTVIGGYVDFGNVREAFSLFNQM-RISMRLDFIVFITLISGC 258
Query: 229 GGVDDDGN--CGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
+GN +H+ +VK G + + + LV MY KC L A+R F+ I +K++
Sbjct: 259 A---REGNLLLASSVHSLLVKYGCDDKDPIDNLLVTMYSKCGDLISAQRAFD-IAREKSL 314
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
W +M+ Y G V+A + + + I+ E+ + + AC+ + +
Sbjct: 315 YLWTSMIAAYTHLGYPVQALRLFNTLLGTAIKPNEATLATILSACADLGS 364
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 70/132 (53%), Gaps = 3/132 (2%)
Query: 185 VWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHAN 244
+W I ++ + G F Q + + M + + N +TF +LKAC + + G ++H++
Sbjct: 17 LWNLMIRSSTKAGLFFQALDIYSSMLQSGVHGNGFTFPLLLKACSNTNSIRD-GTKIHSH 75
Query: 245 IVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVE 304
++++G + +V L+DMY KC L + +VF+ + + + SWN+++ Y R L E
Sbjct: 76 LIQLGFQ-HVFVMTTLLDMYSKCYDLASSRKVFDEMPMRSTV-SWNSIISAYCRFFLVDE 133
Query: 305 ATKFLYLMKASG 316
A L M+ G
Sbjct: 134 AISMLQKMRLIG 145
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 58/243 (23%), Positives = 103/243 (42%), Gaps = 14/243 (5%)
Query: 75 RDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNME 134
R W +MI + + + +++ M++ FP +LKAC T ++
Sbjct: 13 RPLYLWNLMIRSSTKAGLFFQALDIYSSMLQSGVHGNGFTFP-----LLLKACSNTNSIR 67
Query: 135 LGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNC 194
G ++H L +LG +T +L++ Y K L + VF ++ +TV W + I C
Sbjct: 68 DGTKIHSHLIQLGFQHVFVMT-TLLDMYSKCYDLASSRKVFDEMPMRSTVSWNSIISAYC 126
Query: 195 REGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGL--ES 252
R + + ++M S TF L C G + K GL S
Sbjct: 127 RFFLVDEAISMLQKMRLIGFVPTSTTFLCFLPIC-----LLQHGLSIQCCAFKFGLLEGS 181
Query: 253 DEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLM 312
D + L++MY K + +A +F+++ +K++ SW ++ GY+ G EA M
Sbjct: 182 DIPLTNALLNMYVKHGQVHEARTLFDMM-HEKSLISWTTVIGGYVDFGNVREAFSLFNQM 240
Query: 313 KAS 315
+ S
Sbjct: 241 RIS 243
>gi|115461454|ref|NP_001054327.1| Os04g0686500 [Oryza sativa Japonica Group]
gi|38345824|emb|CAE01858.2| OSJNBa0070M12.7 [Oryza sativa Japonica Group]
gi|113565898|dbj|BAF16241.1| Os04g0686500 [Oryza sativa Japonica Group]
gi|215766744|dbj|BAG98972.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222629815|gb|EEE61947.1| hypothetical protein OsJ_16704 [Oryza sativa Japonica Group]
Length = 690
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 83/281 (29%), Positives = 137/281 (48%), Gaps = 12/281 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ CG+L A ++FD MP R+ SW ++VG++ + +EC+ LF EM R G
Sbjct: 43 NNLIDMYAKCGKLHMAGEVFDGMPERNVVSWTALMVGFLHHGEARECLRLFGEM--RGSG 100
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
F + LKA C G Q+HG+ + G + + SL+ Y K R
Sbjct: 101 TSPNEF---TLSATLKA--CGGGTRAGVQIHGVCVRTGFEGHDVVANSLVVMYSKGRWTG 155
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKK-NSYTFSSVLKAC 228
DA VF + N W + I G F+EM R ++ + +TF+S+LKAC
Sbjct: 156 DARRVFDVIPSRNLATWNSMISGYAHAGQGRDSLLVFREMQRRHDEQPDEFTFASLLKAC 215
Query: 229 GGVDDDGNCGRQMHANIVKIGLE--SDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
G+ G Q+HA + G+ S+ + L+D+Y KC L A +VF+ + +++N
Sbjct: 216 SGL-GAAREGAQVHAAMAVRGVSPASNAILAGALLDVYVKCHRLPVAMQVFDGL-ERRNA 273
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDL 327
W ++VG+ + G EA +SG++ +++ +
Sbjct: 274 IQWTTVIVGHAQEGQVKEAMCLFRRFWSSGVRADGHVLSSV 314
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 86/299 (28%), Positives = 131/299 (43%), Gaps = 14/299 (4%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R + + N L++M+ AR++FD +P R+ +W MI GY ++ +
Sbjct: 131 RTGFEGHDVVANSLVVMYSKGRWTGDARRVFDVIPSRNLATWNSMISGYAHAGQGRDSLL 190
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSS--RNISLTG 156
+F EM +R + +LKAC G QVH + G S N L G
Sbjct: 191 VFREMQRRHDEQP----DEFTFASLLKACSGLGAAREGAQVHAAMAVRGVSPASNAILAG 246
Query: 157 SLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKK 216
+L++ Y K L A VF L+R N + WT IV + +EG + F+ ++
Sbjct: 247 ALLDVYVKCHRLPVAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEAMCLFRRFWSSGVRA 306
Query: 217 NSYTFSSVLKACGG---VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDA 273
+ + SSV+ V+ G+Q+H K D V LVDMY KC L +A
Sbjct: 307 DGHVLSSVVAVFADFALVEQ----GKQVHCYTAKTPAGLDVSVANSLVDMYLKCGLTGEA 362
Query: 274 ERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
R F + +N+ SW AM+ G ++G EA M+ G++ E L ACS
Sbjct: 363 GRRFREM-PARNVVSWTAMINGVGKHGHGREAIDLFEEMQEEGVEADEVAYLALLSACS 420
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 72/221 (32%), Positives = 104/221 (47%), Gaps = 5/221 (2%)
Query: 119 IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL 178
+I +L+A ++ G Q+H L KLG + L +LI+ Y K L A VF +
Sbjct: 6 MIADLLRASARGSSLRGGVQLHAALMKLGFGSDTMLNNNLIDMYAKCGKLHMAGEVFDGM 65
Query: 179 KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCG 238
N V WTA +V G + F EM N +T S+ LKACGG G
Sbjct: 66 PERNVVSWTALMVGFLHHGEARECLRLFGEMRGSGTSPNEFTLSATLKACGG---GTRAG 122
Query: 239 RQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIR 298
Q+H V+ G E + V LV MY K R DA RVF+ ++ +N+A+WN+M+ GY
Sbjct: 123 VQIHGVCVRTGFEGHDVVANSLVVMYSKGRWTGDARRVFD-VIPSRNLATWNSMISGYAH 181
Query: 299 NGLYVEA-TKFLYLMKASGIQIQESLINDLRIACSSISASK 338
G ++ F + + Q E L ACS + A++
Sbjct: 182 AGQGRDSLLVFREMQRRHDEQPDEFTFASLLKACSGLGAAR 222
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 119/266 (44%), Gaps = 29/266 (10%)
Query: 40 VNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITL 99
V+ + LL ++V C +L A Q+FD + R+ W +IVG+ +E + L
Sbjct: 236 VSPASNAILAGALLDVYVKCHRLPVAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEAMCL 295
Query: 100 FAEMMK---RKKGHML----LVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNI 152
F R GH+L VF + +V E GKQVH K + ++
Sbjct: 296 FRRFWSSGVRADGHVLSSVVAVFADFALV------------EQGKQVHCYTAKTPAGLDV 343
Query: 153 SLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRE 212
S+ SL++ Y K +A F ++ N V WTA I + GH + + F+EM E
Sbjct: 344 SVANSLVDMYLKCGLTGEAGRRFREMPARNVVSWTAMINGVGKHGHGREAIDLFEEMQEE 403
Query: 213 RIKKNSYTFSSVLKAC---GGVDDDGNCGRQMHANIV--KIGLESDEYVQCGLVDMYGKC 267
++ + + ++L AC G VD+ C R+ + I + E+ C +VD+ G+
Sbjct: 404 GVEADEVAYLALLSACSHSGLVDE---C-RRYFSRICQDRRMRPKAEHYAC-MVDLLGRA 458
Query: 268 RLLRDAERVFELIVDKKNIASWNAML 293
LR+A+ + + + + W +L
Sbjct: 459 GELREAKELILSMPMEPTVGVWQTLL 484
>gi|357130605|ref|XP_003566938.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Brachypodium distachyon]
Length = 670
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 82/269 (30%), Positives = 131/269 (48%), Gaps = 16/269 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+V CG + A + F MP+R+ SW +I G+V ++E +T+F EM+
Sbjct: 262 NALIGMYVKCGCMSDAWKTFKGMPIRNTKSWNTLIDGFVQNGKHKEALTMFEEMLSDG-- 319
Query: 110 HMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
V P I +V VL +++ G+ +H + +I L SLIN Y K +
Sbjct: 320 ----VIPDVITLVSVLSTYAQLGDLQQGRYLHNYIKDHEIHCDIILQNSLINMYAKCGDM 375
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
A+ +F + R + V WTA + + F FN F +M + + S+L AC
Sbjct: 376 AAAEIIFENMARRDIVSWTAMVCGYVKGLQFRTAFNLFDDMKVRDVMASEMALVSLLSAC 435
Query: 229 ---GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
G +D GR++H+ I + + +D +++ LVDMY KC + A +F + K+
Sbjct: 436 SQLGALDK----GREIHSYIKEKSVRTDMWLESALVDMYAKCGCIDAAAEIFSRMRHKQT 491
Query: 286 IASWNAMLVGYIRNGLYVEATK-FLYLMK 313
+A WNAM+ G G EA F L+K
Sbjct: 492 LA-WNAMIGGLASQGQGKEAVALFEQLLK 519
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 78/266 (29%), Positives = 124/266 (46%), Gaps = 4/266 (1%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL VS + AR++FD M W MI GY + + LF M R+ G
Sbjct: 59 LLASPVSRHDMPYARKVFDRMAQPTAIVWNCMIRGYNSCHAPMDALELFRAM--RRSGVS 116
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+ + A G VH L+ ++G + ++ + LINFYG + +EDA
Sbjct: 117 PDNYTMAAVAQSSAAFASWKGRATGDAVHALVQRIGFASDLFVMSGLINFYGASKSVEDA 176
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
VF ++ + V WT I + G + V EM E K N T S+L ACG V
Sbjct: 177 RKVFEEMHERDVVSWTLMISAFAQCGQWDNVLRSLDEMQSEGTKPNKITIISLLSACGQV 236
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
+ G ++A + + G+E+D ++ L+ MY KC + DA + F+ + +N SWN
Sbjct: 237 -RAVDKGLWVYARVDEYGIEADVDIRNALIGMYVKCGCMSDAWKTFKGM-PIRNTKSWNT 294
Query: 292 MLVGYIRNGLYVEATKFLYLMKASGI 317
++ G+++NG + EA M + G+
Sbjct: 295 LIDGFVQNGKHKEALTMFEEMLSDGV 320
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 75/299 (25%), Positives = 130/299 (43%), Gaps = 7/299 (2%)
Query: 38 KRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECI 97
+R+ L ++ L+ + + ++ AR++F+EM RD SW +MI + + +
Sbjct: 149 QRIGFASDLFVMSGLINFYGASKSVEDARKVFEEMHERDVVSWTLMISAFAQCGQWDNVL 208
Query: 98 TLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGS 157
EM + I+ +L AC ++ G V+ + + G ++ + +
Sbjct: 209 RSLDEMQSEGTKPNKIT-----IISLLSACGQVRAVDKGLWVYARVDEYGIEADVDIRNA 263
Query: 158 LINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKN 217
LI Y K C+ DA F + NT W I + G + F+EM + + +
Sbjct: 264 LIGMYVKCGCMSDAWKTFKGMPIRNTKSWNTLIDGFVQNGKHKEALTMFEEMLSDGVIPD 323
Query: 218 SYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVF 277
T SVL + D GR +H I + D +Q L++MY KC + AE +F
Sbjct: 324 VITLVSVLSTYAQLGDLQQ-GRYLHNYIKDHEIHCDIILQNSLINMYAKCGDMAAAEIIF 382
Query: 278 ELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
E + +++I SW AM+ GY++ + A MK + E + L ACS + A
Sbjct: 383 ENMA-RRDIVSWTAMVCGYVKGLQFRTAFNLFDDMKVRDVMASEMALVSLLSACSQLGA 440
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 127/269 (47%), Gaps = 16/269 (5%)
Query: 32 LLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVA 91
L N+I+ I ++ N L+ M+ CG + A +F+ M RD SW M+ GYV
Sbjct: 346 LHNYIKDH-EIHCDIILQNSLINMYAKCGDMAAAEIIFENMARRDIVSWTAMVCGYVKGL 404
Query: 92 DYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRN 151
++ LF +M R ++ +V +L AC ++ G+++H + + +
Sbjct: 405 QFRTAFNLFDDMKVRD-----VMASEMALVSLLSACSQLGALDKGREIHSYIKEKSVRTD 459
Query: 152 ISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGR 211
+ L +L++ Y K C++ A +FS+++ T+ W A I +G + F+++ +
Sbjct: 460 MWLESALVDMYAKCGCIDAAAEIFSRMRHKQTLAWNAMIGGLASQGQGKEAVALFEQLLK 519
Query: 212 ER-IKKNSYTFSSVLKAC---GGVDDDGNCGRQMHANIVKIGLESD-EYVQCGLVDMYGK 266
R K ++ T VL AC G VD+ G ++ +G+ D E+ C +VD+ G+
Sbjct: 520 LRDPKPDAITLKVVLCACTHVGMVDE----GLHYFNLMLTLGIVPDNEHYGC-IVDLLGR 574
Query: 267 CRLLRDAERVFELIVDKKNIASWNAMLVG 295
LL +A + + + N W ++L
Sbjct: 575 AGLLDEAYNFIQKMPIQPNPVIWGSLLAA 603
>gi|347954484|gb|AEP33742.1| chlororespiratory reduction 21 [Barbarea verna]
Length = 607
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 84/318 (26%), Positives = 153/318 (48%), Gaps = 16/318 (5%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFL-NRLLLMHVSC 59
MD L I ++Y +++ C +++D ++ I K + ++ +L++ + C
Sbjct: 55 MDFRNLRIGPEIYGEILQGCVYERDLCTGKQIHARILKNGDFYARNEYIETKLVIFYSKC 114
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AW 118
+ A LF ++ +R+ SWA +I + + + F EM + +FP +
Sbjct: 115 DSFEVAEVLFSKLRVRNVYSWAAIIGLKCRIGLCEGALMGFVEMFEDG------IFPDNF 168
Query: 119 IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL 178
++ V KAC G+ VHG + K G + + SL + YGK L+DA VF ++
Sbjct: 169 VVPNVXKACGALQWSRFGRGVHGYVVKSGXDDCVFVASSLADMYGKCGVLDDARKVFDEI 228
Query: 179 KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC---GGVDDDG 235
N V W A +V + G + F +M E I+ T S+ L A GG+++
Sbjct: 229 PERNVVAWNALMVGYVQNGMNEEAIRLFFDMREEGIEPTRVTVSTCLSASANMGGIEE-- 286
Query: 236 NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
G+Q HA + GLE D + +++ Y K L+ AE +F+ +++ K++ +WN ++ G
Sbjct: 287 --GKQSHAIAIVHGLELDNILGTSILNFYCKVGLIEYAEMIFDRMIE-KDVVTWNLLISG 343
Query: 296 YIRNGLYVEATKFLYLMK 313
Y++ GL +A LM+
Sbjct: 344 YVQQGLVEDAIHMCQLMR 361
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/264 (29%), Positives = 131/264 (49%), Gaps = 9/264 (3%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+ CG LD AR++FDE+P R+ +W ++VGYV +E I LF +M R++G +
Sbjct: 211 MYGKCGVLDDARKVFDEIPERNVVAWNALMVGYVQNGMNEEAIRLFFDM--REEG----I 264
Query: 115 FPAWIIVCV-LKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADF 173
P + V L A +E GKQ H + G + L S++NFY K +E A+
Sbjct: 265 EPTRVTVSTCLSASANMGGIEEGKQSHAIAIVHGLELDNILGTSILNFYCKVGLIEYAEM 324
Query: 174 VFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDD 233
+F ++ + V W I ++G + + M E +K + T ++++ A +
Sbjct: 325 IFDRMIEKDVVTWNLLISGYVQQGLVEDAIHMCQLMRLENLKYDCVTLATLMSAAARTQN 384
Query: 234 DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
G+++ ++ LESD + +DMY KC + DA + F+ IV+ K++ WN +L
Sbjct: 385 L-KLGKEVQCYCIRHSLESDIVLASTAIDMYAKCGSIVDARKAFDSIVE-KDLILWNTLL 442
Query: 294 VGYIRNGLYVEATKFLYLMKASGI 317
Y GL EA + Y M+ +
Sbjct: 443 AAYAEPGLSGEALRLFYEMQLESV 466
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/285 (21%), Positives = 116/285 (40%), Gaps = 38/285 (13%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
+L + G ++ A +FD M +D +W ++I GYV ++ I + ++M+ +
Sbjct: 309 ILNFYCKVGLIEYAEMIFDRMIEKDVVTWNLLISGYVQQGLVEDAIHM-CQLMRLEN--- 364
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
L + + ++ A T N++LGK+V + +I L + I+ Y K + DA
Sbjct: 365 -LKYDCVTLATLMSAAARTQNLKLGKEVQCYCIRHSLESDIVLASTAIDMYAKCGSIVDA 423
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
F + + ++W + G + F EM E + N T++ ++ +
Sbjct: 424 RKAFDSIVEKDLILWNTLLAAYAEPGLSGEALRLFYEMQLESVPPNVITWNLIILS---- 479
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
++ G V+ + L + VF N+ SW
Sbjct: 480 -----------------------FLGNGQVNEAKEMFLQMQSSGVF------PNLVSWTT 510
Query: 292 MLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
M+ G ++NG EA FL M+ SG++ I AC+ +++
Sbjct: 511 MMNGLVQNGCSEEAILFLRKMQESGLRPNAISITVALSACAHLAS 555
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 66/140 (47%), Gaps = 10/140 (7%)
Query: 41 NIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMP----LRDFNSWAVMIVGYVDVADYQEC 96
++ P ++ N ++L + GQ++ A+++F +M + SW M+ G V +E
Sbjct: 465 SVPPNVITWNLIILSFLGNGQVNEAKEMFLQMQSSGVFPNLVSWTTMMNGLVQNGCSEEA 524
Query: 97 ITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFK-LGSSRNISLT 155
I +M + L A I L AC ++ LG+ +HG + + S ++S+
Sbjct: 525 ILFLRKMQESG-----LRPNAISITVALSACAHLASLHLGRSIHGYIIRNQHHSSSVSIE 579
Query: 156 GSLINFYGKFRCLEDADFVF 175
SL++ Y K L A+ +F
Sbjct: 580 TSLVDMYAKCGDLNKAEMIF 599
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/244 (21%), Positives = 97/244 (39%), Gaps = 46/244 (18%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R +++ ++ + + M+ CG + AR+ FD + +D W ++ Y + E +
Sbjct: 397 RHSLESDIVLASTAIDMYAKCGSIVDARKAFDSIVEKDLILWNTLLAAYAEPGLSGEALR 456
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
LF EM L P +I T N+ +
Sbjct: 457 LFYEMQ-------LESVPPNVI---------TWNL-----------------------II 477
Query: 159 INFYGKFRCLEDADFVFSQLKRH----NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERI 214
++F G + + +A +F Q++ N V WT + + G + ++M +
Sbjct: 478 LSFLGNGQ-VNEAKEMFLQMQSSGVFPNLVSWTTMMNGLVQNGCSEEAILFLRKMQESGL 536
Query: 215 KKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEY-VQCGLVDMYGKCRLLRDA 273
+ N+ + + L AC + + GR +H I++ S ++ LVDMY KC L A
Sbjct: 537 RPNAISITVALSACAHLASL-HLGRSIHGYIIRNQHHSSSVSIETSLVDMYAKCGDLNKA 595
Query: 274 ERVF 277
E +F
Sbjct: 596 EMIF 599
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 73/164 (44%), Gaps = 4/164 (2%)
Query: 177 QLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGN 236
Q ++ + ++ + C+ G + + EM ++ + +L+ C + D
Sbjct: 23 QAHSPSSTSYFHRVSSLCKNGEIREALSLVTEMDFRNLRIGPEIYGEILQGCV-YERDLC 81
Query: 237 CGRQMHANIVKIG--LESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLV 294
G+Q+HA I+K G +EY++ LV Y KC AE +F + +N+ SW A++
Sbjct: 82 TGKQIHARILKNGDFYARNEYIETKLVIFYSKCDSFEVAEVLFSKL-RVRNVYSWAAIIG 140
Query: 295 GYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASK 338
R GL A M GI ++ ++ AC ++ S+
Sbjct: 141 LKCRIGLCEGALMGFVEMFEDGIFPDNFVVPNVXKACGALQWSR 184
>gi|115458508|ref|NP_001052854.1| Os04g0436800 [Oryza sativa Japonica Group]
gi|38344064|emb|CAD40816.2| OSJNBa0006B20.8 [Oryza sativa Japonica Group]
gi|113564425|dbj|BAF14768.1| Os04g0436800 [Oryza sativa Japonica Group]
gi|116310780|emb|CAH67572.1| H0315A08.2 [Oryza sativa Indica Group]
gi|215704891|dbj|BAG94919.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218194892|gb|EEC77319.1| hypothetical protein OsI_15984 [Oryza sativa Indica Group]
Length = 717
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 98/370 (26%), Positives = 153/370 (41%), Gaps = 55/370 (14%)
Query: 8 ITTDMYTCLIKECTFQKDSAGAFELLNHIRKRV--------NIKPTLLFLNRLLLMHVSC 59
+ + +Y L++ T + A A + H+ T LF NR + +C
Sbjct: 42 VPSAVYASLLRLATSHRSLAAARRIATHLASSTAPSTSHSFTATSTFLF-NRAVESLAAC 100
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK---RKKGHMLLVFP 116
G L AR+LFD MP RD SW +I Y + E I+LF+ M R K L
Sbjct: 101 GSLTDARKLFDAMPRRDGGSWNAIISAYSRGEEPTEAISLFSAMNSCGVRPKDVTL---- 156
Query: 117 AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFS 176
VL C +++ +Q+HG + K N+ L +L++ YGK L +A F
Sbjct: 157 ----ASVLGCCAECLDLHGARQLHGHIAKRDFQSNVILGTALVDVYGKCFALSEARRAFD 212
Query: 177 QLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGN 236
+ + N + W I G + F M + YT S L AC D+G
Sbjct: 213 GIPKPNDISWNVIIRRYLLAGMGDMAIDMFFRMVWAGVSPLVYTVSQALLAC---RDNGA 269
Query: 237 C--GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFEL--------------- 279
GR++H +++ G E +V+ +VDMY KC + A+R+F+L
Sbjct: 270 LEEGRRIHTFVLRHGYEQHVHVRSSVVDMYAKCGAIDLAQRLFDLAPVKDIVMSTSIVSG 329
Query: 280 ------IVDKK---------NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLI 324
I D K N+ SWNAML GY+R+ A + M+ ++ +
Sbjct: 330 LASCGRITDAKRVFEGMEEHNLVSWNAMLTGYVRSMDLTSALQLFQQMRQETKELDAVTL 389
Query: 325 NDLRIACSSI 334
+ AC+ +
Sbjct: 390 GCVLNACTGL 399
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 79/263 (30%), Positives = 121/263 (46%), Gaps = 10/263 (3%)
Query: 57 VSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP 116
SCG++ A+++F+ M + SW M+ GYV D + LF +M + K
Sbjct: 331 ASCGRITDAKRVFEGMEEHNLVSWNAMLTGYVRSMDLTSALQLFQQMRQETK-----ELD 385
Query: 117 AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDAD--FV 174
A + CVL AC +++ G++VH FK G L +L+ Y K CL A+ +
Sbjct: 386 AVTLGCVLNACTGLLDLGKGEEVHTFAFKSGFIGYPFLKNALLRMYSKCGCLRSAERLLL 445
Query: 175 FSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDD 234
F ++ W + I R EM E N TFSS L AC +
Sbjct: 446 FEMGSERDSYSWNSLISGYERHSMSEAALLALSEMHYE-ATPNQSTFSSALAACANIFLL 504
Query: 235 GNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLV 294
N G+Q+HA +++ G D+ +Q L+DMY KCRL + R+FE +++ WN+M+
Sbjct: 505 -NHGKQIHAYMIRNGYVIDDILQSALIDMYSKCRLFDYSMRIFE-AGPSQDVILWNSMIF 562
Query: 295 GYIRNGLYVEATKFLYLMKASGI 317
G NG + + M GI
Sbjct: 563 GCAYNGKGEYGLELFFEMSKQGI 585
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 88/343 (25%), Positives = 150/343 (43%), Gaps = 42/343 (12%)
Query: 25 DSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMI 84
D GA +L HI KR + + ++ L+ ++ C L AR+ FD +P + SW V+I
Sbjct: 168 DLHGARQLHGHIAKR-DFQSNVILGTALVDVYGKCFALSEARRAFDGIPKPNDISWNVII 226
Query: 85 VGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLF 144
Y+ I +F M+ G LV+ + L AC +E G+++H +
Sbjct: 227 RRYLLAGMGDMAIDMFFRMVW--AGVSPLVY---TVSQALLACRDNGALEEGRRIHTFVL 281
Query: 145 KLGSSRNISLTGSLINFYGKFRCLE-------------------------------DADF 173
+ G +++ + S+++ Y K ++ DA
Sbjct: 282 RHGYEQHVHVRSSVVDMYAKCGAIDLAQRLFDLAPVKDIVMSTSIVSGLASCGRITDAKR 341
Query: 174 VFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDD 233
VF ++ HN V W A + R F++M +E + ++ T VL AC G+ D
Sbjct: 342 VFEGMEEHNLVSWNAMLTGYVRSMDLTSALQLFQQMRQETKELDAVTLGCVLNACTGLLD 401
Query: 234 DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAER--VFELIVDKKNIASWNA 291
G G ++H K G +++ L+ MY KC LR AER +FE+ ++ + SWN+
Sbjct: 402 LGK-GEEVHTFAFKSGFIGYPFLKNALLRMYSKCGCLRSAERLLLFEMGSERDSY-SWNS 459
Query: 292 MLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
++ GY R+ + A L M Q + + L AC++I
Sbjct: 460 LISGYERHSMSEAALLALSEMHYEATPNQSTFSSAL-AACANI 501
>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Cucumis sativus]
Length = 688
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 88/310 (28%), Positives = 146/310 (47%), Gaps = 10/310 (3%)
Query: 30 FELLNHIRKRV---NIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVG 86
F L HI R+ ++ LN +L + G + ++ +F ++ + W MI G
Sbjct: 29 FNQLKHIHARLLRLHLDQDNYLLNLILCCALDFGSTNYSKLVFSQVKEPNIFLWNTMIRG 88
Query: 87 YVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKL 146
V + + I L+ M R G + F I VLKAC +++ LG ++H LL K
Sbjct: 89 LVSKDCFDDAIHLYGSM--RGGGFLPNNF---TIPFVLKACARKLDVRLGLKIHSLLVKA 143
Query: 147 GSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDF 206
G ++ + SL++ Y K +DA VF + N V WTA I GHF + F
Sbjct: 144 GYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAF 203
Query: 207 KEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGK 266
K++ +K +S++ VL AC + D G + I G+ + +V L+DMY K
Sbjct: 204 KKLLEMGLKPDSFSLVKVLAACARL-GDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVK 262
Query: 267 CRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLIND 326
C L A +F + +K+I SW+ M+ GY NGL +A + M++ ++ +
Sbjct: 263 CGNLERANLIFSAM-PEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVG 321
Query: 327 LRIACSSISA 336
+ AC+++ A
Sbjct: 322 VLSACATLGA 331
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 80/284 (28%), Positives = 133/284 (46%), Gaps = 13/284 (4%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL ++V C D A ++FD++P ++ SW +I GY+ ++E I F ++++ M
Sbjct: 155 LLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLE-----M 209
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
L ++ +V VL AC + G+ + + G RN+ + SL++ Y K LE A
Sbjct: 210 GLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERA 269
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--- 228
+ +FS + + V W+ I G Q + F +M E +K + YT VL AC
Sbjct: 270 NLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATL 329
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
G +D G + + + S+ + L+DMY KC + A +F + KK+
Sbjct: 330 GALD----LGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAM-KKKDRVV 384
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
WNAM+VG NG L++ GI+ E+ L C+
Sbjct: 385 WNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCT 428
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 76/248 (30%), Positives = 119/248 (47%), Gaps = 13/248 (5%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL M+V CG L+ A +F MP +D SW+ MI GY Q+ + LF +M
Sbjct: 256 LLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSEN---- 311
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
L + +V VL AC ++LG L+ + N L +LI+ Y K + A
Sbjct: 312 -LKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQA 370
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--G 229
+F+ +K+ + VVW A +V GH VF+ F + + I+ + TF +L C G
Sbjct: 371 WEIFTAMKKKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHG 430
Query: 230 GVDDDGNCGRQMHANIVKIG--LESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
G ++ GRQ N+ ++ S E+ C +VD+ G+ LL +A ++ + K N
Sbjct: 431 GFVNE---GRQFFNNMKRVFSLTPSIEHYGC-MVDLLGRAGLLNEAHQLINNMPMKPNAV 486
Query: 288 SWNAMLVG 295
W A+L G
Sbjct: 487 VWGALLGG 494
>gi|449445027|ref|XP_004140275.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
Length = 833
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/269 (29%), Positives = 139/269 (51%), Gaps = 10/269 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDV-ADYQECITLFAEMMKRKK 108
N LL+++ +CG L+ AR+LFDEMP RD SW I+G + V DY E + M+ R
Sbjct: 198 NTLLMLYGNCGFLNDARRLFDEMPERDVVSWNT-IIGLLSVNGDYTEARNYYFWMILRS- 255
Query: 109 GHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
++ P + ++ +L + E+ +++H K+G ++ +L++ YGK
Sbjct: 256 ----VIKPNLVSVISLLPISAALEDEEMTRRIHCYSVKVGLDSQVTTCNALVDAYGKCGS 311
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
++ VF++ N V W + I +G N F+ M + NS T SS+L
Sbjct: 312 VKALWQVFNETVEKNEVSWNSIINGLACKGRCWDALNAFRMMIDAGAQPNSVTISSILPV 371
Query: 228 CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
+ + G+++H +++G E+D ++ L+DMY K +A +F + D++NI
Sbjct: 372 LVEL-ECFKAGKEIHGFSMRMGTETDIFIANSLIDMYAKSGHSTEASTIFHNL-DRRNIV 429
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASG 316
SWNAM+ Y N L +EA +F+ M+ +G
Sbjct: 430 SWNAMIANYALNRLPLEAIRFVIQMQETG 458
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 78/300 (26%), Positives = 134/300 (44%), Gaps = 8/300 (2%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
+V + + N L+ + CG + Q+F+E ++ SW +I G + +
Sbjct: 289 KVGLDSQVTTCNALVDAYGKCGSVKALWQVFNETVEKNEVSWNSIINGLACKGRCWDALN 348
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
F M+ + + + V V C + GK++HG ++G+ +I + SL
Sbjct: 349 AFRMMIDAGAQPNSVTISSILPVLVELEC-----FKAGKEIHGFSMRMGTETDIFIANSL 403
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
I+ Y K +A +F L R N V W A I N + +M N+
Sbjct: 404 IDMYAKSGHSTEASTIFHNLDRRNIVSWNAMIANYALNRLPLEAIRFVIQMQETGECPNA 463
Query: 219 YTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE 278
TF++VL AC + G G+++HA V+IGL SD +V L+DMY KC L A VF
Sbjct: 464 VTFTNVLPACARLGFLGP-GKEIHAMGVRIGLTSDLFVSNSLIDMYAKCGCLHSARNVFN 522
Query: 279 LIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASK 338
+K+ S+N +++GY +++ M+ G + + AC++++A K
Sbjct: 523 --TSRKDEVSYNILIIGYSETDDCLQSLNLFSEMRLLGKKPDVVSFVGVISACANLAALK 580
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/280 (26%), Positives = 122/280 (43%), Gaps = 8/280 (2%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R+ + + N L+ M+ G A +F + R+ SW MI Y E I
Sbjct: 390 RMGTETDIFIANSLIDMYAKSGHSTEASTIFHNLDRRNIVSWNAMIANYALNRLPLEAIR 449
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
+M + + + F VL AC + GK++H + ++G + ++ ++ SL
Sbjct: 450 FVIQMQETGECPNAVTFTN-----VLPACARLGFLGPGKEIHAMGVRIGLTSDLFVSNSL 504
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
I+ Y K CL A VF+ R + V + I+ Q N F EM K +
Sbjct: 505 IDMYAKCGCLHSARNVFNT-SRKDEVSYNILIIGYSETDDCLQSLNLFSEMRLLGKKPDV 563
Query: 219 YTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE 278
+F V+ AC + G+++H ++ L S +V L+D Y KC + A R+F
Sbjct: 564 VSFVGVISACANLAALKQ-GKEVHGVALRNHLYSHLFVSNSLLDFYTKCGRIDIACRLFN 622
Query: 279 LIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
I+ K++ASWN M++GY G A M+ +Q
Sbjct: 623 QIL-FKDVASWNTMILGYGMIGELETAISMFEAMRDDTVQ 661
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 125/257 (48%), Gaps = 11/257 (4%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R+ + L N L+ M+ CG L +AR +F+ +D S+ ++I+GY + D + +
Sbjct: 491 RIGLTSDLFVSNSLIDMYAKCGCLHSARNVFN-TSRKDEVSYNILIIGYSETDDCLQSLN 549
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
LF+EM K ++ F V V+ AC ++ GK+VHG+ + ++ ++ SL
Sbjct: 550 LFSEMRLLGKKPDVVSF-----VGVISACANLAALKQGKEVHGVALRNHLYSHLFVSNSL 604
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
++FY K ++ A +F+Q+ + W I+ G + F+ M + ++ +
Sbjct: 605 LDFYTKCGRIDIACRLFNQILFKDVASWNTMILGYGMIGELETAISMFEAMRDDTVQYDL 664
Query: 219 YTFSSVLKAC--GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERV 276
++ +VL AC GG+ + G Q + ++ LE E +VD+ G+ + +A ++
Sbjct: 665 VSYIAVLSACSHGGLVER---GWQYFSEMLAQRLEPTEMHYTCMVDLLGRAGFVEEAAKL 721
Query: 277 FELIVDKKNIASWNAML 293
+ + + W A+L
Sbjct: 722 IQQLPIAPDANIWGALL 738
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 100/206 (48%), Gaps = 3/206 (1%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
VLK C + ++ G +VHG++FKLG ++ + +L+ YG L DA +F ++ +
Sbjct: 165 VLKLCSDSFDICKGMEVHGVVFKLGFDTDVYVGNTLLMLYGNCGFLNDARRLFDEMPERD 224
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEM-GRERIKKNSYTFSSVLKACGGVDDDGNCGRQM 241
V W I G + + N + M R IK N + S+L ++D+ R++
Sbjct: 225 VVSWNTIIGLLSVNGDYTEARNYYFWMILRSVIKPNLVSVISLLPISAALEDE-EMTRRI 283
Query: 242 HANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGL 301
H VK+GL+S LVD YGKC ++ +VF V+K + SWN+++ G G
Sbjct: 284 HCYSVKVGLDSQVTTCNALVDAYGKCGSVKALWQVFNETVEKNEV-SWNSIINGLACKGR 342
Query: 302 YVEATKFLYLMKASGIQIQESLINDL 327
+A +M +G Q I+ +
Sbjct: 343 CWDALNAFRMMIDAGAQPNSVTISSI 368
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 99/210 (47%), Gaps = 28/210 (13%)
Query: 118 WIIVCVLKACVCTMNMELGKQVHGLLFKLGS-SRNISLTGSLINFYGKFRCLED------ 170
+I + +L C ++ KQVH L G R++SL SLI Y KF+
Sbjct: 55 YIHINLLTLCSKVQSLLQTKQVHALGILNGFLPRSVSLCASLILNYAKFQHPGSFCSLFN 114
Query: 171 -------ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSS 223
F+++ L R +++ W N +G F + M R ++ + +TF
Sbjct: 115 QTFQNCRTAFLWNTLIRAHSIAW-----NGTFDG-----FETYNRMVRRGVQLDDHTFPF 164
Query: 224 VLKACGGVDDDGNC-GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282
VLK C D C G ++H + K+G ++D YV L+ +YG C L DA R+F+ +
Sbjct: 165 VLKLCS--DSFDICKGMEVHGVVFKLGFDTDVYVGNTLLMLYGNCGFLNDARRLFDEM-P 221
Query: 283 KKNIASWNAMLVGYIRNGLYVEATKFLYLM 312
++++ SWN ++ NG Y EA + + M
Sbjct: 222 ERDVVSWNTIIGLLSVNGDYTEARNYYFWM 251
>gi|356543252|ref|XP_003540076.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Glycine max]
Length = 934
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/279 (26%), Positives = 142/279 (50%), Gaps = 6/279 (2%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+ G ++ A+ +FD+MP R+ SW ++ G+V V YQ+ + F M++ V
Sbjct: 1 MYSKFGSIEHAQHVFDKMPERNEASWNNLMSGFVRVGWYQKAMQFFCHMLEHGVRPSSYV 60
Query: 115 FPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFV 174
+ + C C+ E QVH + K G + ++ + SL++FYG F + + D V
Sbjct: 61 AASLVTACDRSGCM----TEGAFQVHAHVIKCGLACDVFVGTSLLHFYGTFGWVAEVDMV 116
Query: 175 FSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDD 234
F +++ N V WT+ +V G +V + ++ + R+ + N ++V+++C GV D
Sbjct: 117 FKEIEEPNIVSWTSLMVGYAYNGCVKEVMSVYRRLRRDGVYCNENAMATVIRSC-GVLVD 175
Query: 235 GNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLV 294
G Q+ +++K GL++ V L+ M+G C + +A VF+ + ++ I SWN+++
Sbjct: 176 KMLGYQVLGSVIKSGLDTTVSVANSLISMFGNCDSIEEASCVFDDMKERDTI-SWNSIIT 234
Query: 295 GYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSS 333
+ NG ++ ++ M+ + + I+ L C S
Sbjct: 235 ASVHNGHCEKSLEYFSQMRYTHAKTDYITISALLPVCGS 273
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/272 (29%), Positives = 127/272 (46%), Gaps = 9/272 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N LL M+ G+ + A +F +M RD SW M+ +VD +Y + L EM++ +K
Sbjct: 300 NSLLSMYSQAGKSEDAEFVFHKMRERDLISWNSMMASHVDNGNYPRALELLIEMLQTRKA 359
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ F L AC N+E K VH + LG N+ + +L+ YGKF +
Sbjct: 360 TNYVTF-----TTALSAC---YNLETLKIVHAFVILLGLHHNLIIGNALVTMYGKFGSMA 411
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A V + + V W A I + + F + E + N T ++L A
Sbjct: 412 AAQRVCKIMPDRDEVTWNALIGGHADNKEPNAAIEAFNLLREEGVPVNYITIVNLLSAFL 471
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
DD + G +HA+IV G E + +VQ L+ MY +C L + +F+++ + KN ++W
Sbjct: 472 SPDDLLDHGMPIHAHIVVAGFELETFVQSSLITMYAQCGDLNTSNYIFDVLAN-KNSSTW 530
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQE 321
NA+L G EA K + M+ GI + +
Sbjct: 531 NAILSANAHYGPGEEALKLIIKMRNDGIHLDQ 562
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 139/287 (48%), Gaps = 8/287 (2%)
Query: 26 SAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIV 85
+ GAF++ H+ K + + LL + + G + +F E+ + SW ++V
Sbjct: 75 TEGAFQVHAHVIK-CGLACDVFVGTSLLHFYGTFGWVAEVDMVFKEIEEPNIVSWTSLMV 133
Query: 86 GYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFK 145
GY +E ++++ + R+ G + + V+++C ++ LG QV G + K
Sbjct: 134 GYAYNGCVKEVMSVYRRL--RRDG---VYCNENAMATVIRSCGVLVDKMLGYQVLGSVIK 188
Query: 146 LGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFND 205
G +S+ SLI+ +G +E+A VF +K +T+ W + I + GH +
Sbjct: 189 SGLDTTVSVANSLISMFGNCDSIEEASCVFDDMKERDTISWNSIITASVHNGHCEKSLEY 248
Query: 206 FKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYG 265
F +M K + T S++L CG + GR +H +VK GLES+ V L+ MY
Sbjct: 249 FSQMRYTHAKTDYITISALLPVCGSAQNL-RWGRGLHGMVVKSGLESNVCVCNSLLSMYS 307
Query: 266 KCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLM 312
+ DAE VF + ++++ SWN+M+ ++ NG Y A + L M
Sbjct: 308 QAGKSEDAEFVFHKM-RERDLISWNSMMASHVDNGNYPRALELLIEM 353
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 73/290 (25%), Positives = 130/290 (44%), Gaps = 12/290 (4%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L+ N L+ M+ G + A+++ MP RD +W +I G+ D + I F +
Sbjct: 394 LIIGNALVTMYGKFGSMAAAQRVCKIMPDRDEVTWNALIGGHADNKEPNAAIEAFN--LL 451
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNM-ELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
R++G + IV +L A + ++ + G +H + G + SLI Y +
Sbjct: 452 REEG---VPVNYITIVNLLSAFLSPDDLLDHGMPIHAHIVVAGFELETFVQSSLITMYAQ 508
Query: 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
L ++++F L N+ W A + N G + +M + I + ++FS
Sbjct: 509 CGDLNTSNYIFDVLANKNSSTWNAILSANAHYGPGEEALKLIIKMRNDGIHLDQFSFSVA 568
Query: 225 LKACGGVD--DDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282
G + D+ G+Q+H+ I+K G ES++YV +DMYGKC + D R+
Sbjct: 569 HAIIGNLTLLDE---GQQLHSLIIKHGFESNDYVLNATMDMYGKCGEIDDVFRILPQPRS 625
Query: 283 KKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+ SWN ++ R+G + +A + + M G++ L ACS
Sbjct: 626 RSQ-RSWNILISALARHGFFQQAREAFHEMLDLGLRPDHVTFVSLLSACS 674
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 110/250 (44%), Gaps = 13/250 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+ L+ M+ CG L+T+ +FD + ++ ++W ++ +E + L +M R G
Sbjct: 500 SSLITMYAQCGDLNTSNYIFDVLANKNSSTWNAILSANAHYGPGEEALKLIIKM--RNDG 557
Query: 110 HMLLVFPAWIIVCVLKACVCTMNM-ELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
L F V A + + + + G+Q+H L+ K G N + + ++ YGK +
Sbjct: 558 IHLDQFS----FSVAHAIIGNLTLLDEGQQLHSLIIKHGFESNDYVLNATMDMYGKCGEI 613
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+D + Q + + W I R G F Q F EM ++ + TF S+L AC
Sbjct: 614 DDVFRILPQPRSRSQRSWNILISALARHGFFQQAREAFHEMLDLGLRPDHVTFVSLLSAC 673
Query: 229 --GGVDDDGNCGRQMHANIVKIGLESD-EYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
GG+ D+G + K G+ + E+ C ++D+ G+ L +AE +
Sbjct: 674 SHGGLVDEGLA--YFSSMSTKFGVPTGIEHCVC-IIDLLGRAGKLTEAENFINKMPVPPT 730
Query: 286 IASWNAMLVG 295
W ++L
Sbjct: 731 DLVWRSLLAA 740
>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
Length = 685
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 83/283 (29%), Positives = 137/283 (48%), Gaps = 15/283 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N ++ + G+L A++LF+E P+RD +W M+ GYV E +F M ++
Sbjct: 158 NTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNS- 216
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+W ++ V M+ ++ LF+ +N+S ++I Y + +
Sbjct: 217 ------VSW--NAIIAGYVQCKRMDQARE----LFEAMPCQNVSSWNTMITGYAQNGDIA 264
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A F ++ + +++ W A I + G+ + + F EM R+ + N TF+S L C
Sbjct: 265 QARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCA 324
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ G+Q+H +VK GLES YV L+ MY KC + DA VFE I ++K + SW
Sbjct: 325 EIAAL-ELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGI-EEKEVVSW 382
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
N M+ GY R+G EA MK +GI + + + ACS
Sbjct: 383 NTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACS 425
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 108/246 (43%), Gaps = 9/246 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N ++ + G + AR FD MP RD SWA +I GY +E + LF EM ++ G
Sbjct: 251 NTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEM--KRDG 308
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
L L C +ELGKQVHG + K G + +L+ Y K ++
Sbjct: 309 ERLNRS---TFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNID 365
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
DA VF ++ V W I R G + F+ M + I + T VL AC
Sbjct: 366 DAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACS 425
Query: 230 --GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
G+ D G ++ G+ ++ ++D+ G+ L DA+ + + + + + A
Sbjct: 426 HTGLVDKGT--EYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAA 483
Query: 288 SWNAML 293
+W A+L
Sbjct: 484 TWGALL 489
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 69/277 (24%), Positives = 117/277 (42%), Gaps = 26/277 (9%)
Query: 39 RVNIKPTLLFLNRLLLMH-VSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECI 97
+++ P FL R L V L AR LFD+MP RD SW M+ GY +E
Sbjct: 22 QLHASPEFDFLERHDLRGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAK 81
Query: 98 TLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGS 157
+F EM + +W +L A V +E ++ LF+ + +
Sbjct: 82 EIFDEMPCKNS-------ISW--NGMLAAYVQNGRIEDARR----LFESKADWELISWNC 128
Query: 158 LINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKN 217
++ Y K L DA +F ++ + V W I + G + F+ E ++
Sbjct: 129 MMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFE----ESPVRD 184
Query: 218 SYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQC-GLVDMYGKCRLLRDAERV 276
+T+++++ G V + G A V G+ V ++ Y +C+ + A +
Sbjct: 185 VFTWTAMV--SGYVQN----GMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQAREL 238
Query: 277 FELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMK 313
FE + +N++SWN M+ GY +NG +A F M
Sbjct: 239 FEAM-PCQNVSSWNTMITGYAQNGDIAQARNFFDRMP 274
>gi|115474729|ref|NP_001060961.1| Os08g0138600 [Oryza sativa Japonica Group]
gi|38636769|dbj|BAD03012.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113622930|dbj|BAF22875.1| Os08g0138600 [Oryza sativa Japonica Group]
Length = 690
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 84/313 (26%), Positives = 150/313 (47%), Gaps = 11/313 (3%)
Query: 7 PITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTAR 66
P+ Y L+ ++ A +L H+ + +P NR+L M ++CG L AR
Sbjct: 112 PLPASTYDALVASAAALREPGFAAAVLWHV-ESSGFEPGQRAWNRVLRMQLACGMLAEAR 170
Query: 67 QLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKA 126
Q+FD MP R +W M+ G +D + + LF E+ + G ++V ++A
Sbjct: 171 QVFDGMPARSEATWGTMMGGLIDAGRPRGALALFRELWEEVGGDAAPR----VVVVAVRA 226
Query: 127 CVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVW 186
+ G+Q+H + K G + L+ +LI+ Y K L++A VF + + + V W
Sbjct: 227 VTALGSARAGQQLHCCVAKTGMYEDQYLSCALIDMYNKCGKLDEARRVFDGVPQKSVVAW 286
Query: 187 TAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG--GVDDDGNCGRQMHAN 244
+ + + G + + + M + + +TFS++L+ G+ + +Q HA
Sbjct: 287 NSMLASYSLHGCSEEALDLYHSMCEGGVDIDQFTFSTMLRVFSRLGLLEH---AKQAHAG 343
Query: 245 IVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVE 304
+++ GL D LVD+Y K L+ DA VFE + +N+ SWNA++ GY +G+ +
Sbjct: 344 LIQTGLPLDIVGNTALVDLYCKWGLMEDARNVFERM-PIRNLISWNALIAGYGYHGMGQK 402
Query: 305 ATKFLYLMKASGI 317
A + + A GI
Sbjct: 403 AIEMFEELIAEGI 415
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 81/177 (45%), Gaps = 5/177 (2%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ CG+LD AR++FD +P + +W M+ Y +E + L+ M +
Sbjct: 258 LIDMYNKCGKLDEARRVFDGVPQKSVVAWNSMLASYSLHGCSEEALDLYHSMCEGG---- 313
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+ + +L+ +E KQ H L + G +I +L++ Y K+ +EDA
Sbjct: 314 -VDIDQFTFSTMLRVFSRLGLLEHAKQAHAGLIQTGLPLDIVGNTALVDLYCKWGLMEDA 372
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
VF ++ N + W A I G + F+E+ E I N TF +VL AC
Sbjct: 373 RNVFERMPIRNLISWNALIAGYGYHGMGQKAIEMFEELIAEGIAPNHVTFLAVLNAC 429
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 67/154 (43%), Gaps = 1/154 (0%)
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
L +A VF + + W + G F+E+ E + V
Sbjct: 166 LAEARQVFDGMPARSEATWGTMMGGLIDAGRPRGALALFRELWEEVGGDAAPRVVVVAVR 225
Query: 228 CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
G+Q+H + K G+ D+Y+ C L+DMY KC L +A RVF+ V +K++
Sbjct: 226 AVTALGSARAGQQLHCCVAKTGMYEDQYLSCALIDMYNKCGKLDEARRVFD-GVPQKSVV 284
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQE 321
+WN+ML Y +G EA + M G+ I +
Sbjct: 285 AWNSMLASYSLHGCSEEALDLYHSMCEGGVDIDQ 318
>gi|242088973|ref|XP_002440319.1| hypothetical protein SORBIDRAFT_09g029650 [Sorghum bicolor]
gi|241945604|gb|EES18749.1| hypothetical protein SORBIDRAFT_09g029650 [Sorghum bicolor]
Length = 671
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/297 (27%), Positives = 127/297 (42%), Gaps = 7/297 (2%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
++ + N L ++ CG +D A M RD +W +I YV +E I
Sbjct: 190 KLGLDAVPFVANALAALYARCGDVDRALAAVGRMGTRDVAAWTTLIASYVQTGRAEEAIE 249
Query: 99 LFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGS 157
F M++ + + P + V+ AC LG+Q+H + G S S+ S
Sbjct: 250 AFVRMLRNESSNS--ASPNEYTFSAVIAACPNIERAYLGEQLHAQAARRGLSHTRSVANS 307
Query: 158 LINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRER--IK 215
L+ Y + L AD +F + + V W+ I +EG + F F EM +
Sbjct: 308 LVKLYARRGRLSAADAIFRENAVKDVVSWSTIISGYAQEGLVEESFALFSEMRHHSSCPR 367
Query: 216 KNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAER 275
N +T +S+ C GRQ+HA V GLE V+ LV+MYGK + DA
Sbjct: 368 PNEFTLASLFSVCASAASL-YAGRQLHALAVAAGLEHHAMVRSALVNMYGKSGSMTDANV 426
Query: 276 VFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+F + ++ SW AM+VG+ +G EA + M G++ + ACS
Sbjct: 427 IFSSRT-RDDVISWTAMIVGHAEHGHSKEAFQLFEEMCRVGLKPDHVTFIGVLTACS 482
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 73/278 (26%), Positives = 122/278 (43%), Gaps = 32/278 (11%)
Query: 31 ELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDV 90
E L+ R + T N L+ ++ G+L A +F E ++D SW+ +I GY
Sbjct: 287 EQLHAQAARRGLSHTRSVANSLVKLYARRGRLSAADAIFRENAVKDVVSWSTIISGYAQE 346
Query: 91 ADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSS 149
+E LF+EM + H P + + + C ++ G+Q+H L G
Sbjct: 347 GLVEESFALFSEM----RHHSSCPRPNEFTLASLFSVCASAASLYAGRQLHALAVAAGLE 402
Query: 150 RNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEM 209
+ + +L+N YGK + DA+ +FS R + + WTA IV + GH + F F+EM
Sbjct: 403 HHAMVRSALVNMYGKSGSMTDANVIFSSRTRDDVISWTAMIVGHAEHGHSKEAFQLFEEM 462
Query: 210 GRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGL-------------ESDEYV 256
R +K + TF VL AC HA V++GL E+
Sbjct: 463 CRVGLKPDHVTFIGVLTACS------------HAGEVELGLRYLNAMNKCYVVEPEKEHY 510
Query: 257 QCGLVDMYGKCRLLRDAERVF-ELIVDKKNIASWNAML 293
C +VD+ + + +AE + + D ++ W ++L
Sbjct: 511 GC-VVDLLARAGRIHEAEELIGRIAADGRDGVVWTSLL 547
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/268 (25%), Positives = 108/268 (40%), Gaps = 23/268 (8%)
Query: 56 HVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG-----H 110
+ G L+ A Q+ DE P ++ SW ++ + + FAEM R G H
Sbjct: 106 YAKAGSLELALQVLDETPCKNVVSWTTLVASLARGGRRHDALRRFAEM--RASGVDCDSH 163
Query: 111 MLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
L+A G++VH L KLG + +L Y + ++
Sbjct: 164 ACAAALTACAGAGLRA--------RGREVHALCAKLGLDAVPFVANALAALYARCGDVDR 215
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRER----IKKNSYTFSSVLK 226
A ++ + WT I + + G + F M R N YTFS+V+
Sbjct: 216 ALAAVGRMGTRDVAAWTTLIASYVQTGRAEEAIEAFVRMLRNESSNSASPNEYTFSAVIA 275
Query: 227 ACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVF-ELIVDKKN 285
AC + + G Q+HA + GL V LV +Y + L A+ +F E V K+
Sbjct: 276 ACPNI-ERAYLGEQLHAQAARRGLSHTRSVANSLVKLYARRGRLSAADAIFRENAV--KD 332
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMK 313
+ SW+ ++ GY + GL E+ M+
Sbjct: 333 VVSWSTIISGYAQEGLVEESFALFSEMR 360
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 60/260 (23%), Positives = 105/260 (40%), Gaps = 25/260 (9%)
Query: 72 MPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTM 131
MP RD ++A ++ GY AD+ + LF+ H +I+ VLKAC
Sbjct: 1 MPHRDEVAYATLLSGYAMAADFPGAMALFSRFRASYPPHA--AADPFILSPVLKACASAS 58
Query: 132 NMELGKQVHGL-----------------LFKLGSSRNISLTGSLINFYGKFRCLEDADFV 174
+ + ++ ++ +L + Y K LE A V
Sbjct: 59 ASAAAGAGASVGLLHLPQAAAAAALHAFAVHSSAVSSVFVSTALADAYAKAGSLELALQV 118
Query: 175 FSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDD 234
+ N V WT + + R G H F EM + +S+ ++ L AC G
Sbjct: 119 LDETPCKNVVSWTTLVASLARGGRRHDALRRFAEMRASGVDCDSHACAAALTACAGAGLR 178
Query: 235 GNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELI--VDKKNIASWNAM 292
GR++HA K+GL++ +V L +Y +C D +R + + +++A+W +
Sbjct: 179 AR-GREVHALCAKLGLDAVPFVANALAALYARC---GDVDRALAAVGRMGTRDVAAWTTL 234
Query: 293 LVGYIRNGLYVEATKFLYLM 312
+ Y++ G EA + M
Sbjct: 235 IASYVQTGRAEEAIEAFVRM 254
>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 999
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/288 (27%), Positives = 134/288 (46%), Gaps = 22/288 (7%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL ++V C + TA + F + Y + + + +F +M
Sbjct: 393 LLDLYVKCSDIKTAHEFF---------------LCYGQLDNLNKSFQIFTQMQIEGIVPN 437
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+P+ +LK C +LG+Q+H + K G N+ ++ LI+ Y K L+ A
Sbjct: 438 QFTYPS-----ILKTCTTLGATDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHA 492
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
+F +LK ++ V WTA I + F + N FKEM + IK ++ F+S + AC G+
Sbjct: 493 LKIFRRLKENDVVSWTAMIAGYTQHDKFTEALNLFKEMQDQGIKSDNIGFASAISACAGI 552
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
GRQ+HA G D + LV +Y +C +R+A F+ I K N+ SWN+
Sbjct: 553 QALDQ-GRQIHAQSCLSGYSDDLSIGNALVSLYARCGKVREAYAAFDQIYAKDNV-SWNS 610
Query: 292 MLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKI 339
++ G+ ++G + EA M +G++I A ++I+ +I
Sbjct: 611 LVSGFAQSGYFEEALNIFAQMNKAGLEINSFTFGSAVSAAANIANVRI 658
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 84/325 (25%), Positives = 145/325 (44%), Gaps = 27/325 (8%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRV---NIKPTLLFLNRLLLMHVSCGQLDTARQLF 69
Y ++K CT + GA +L I +V + + + L+ M+ G+LD A ++F
Sbjct: 441 YPSILKTCT----TLGATDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIF 496
Query: 70 DEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVC 129
+ D SW MI GY + E + LF EM + + F + I AC
Sbjct: 497 RRLKENDVVSWTAMIAGYTQHDKFTEALNLFKEMQDQGIKSDNIGFASAI-----SACAG 551
Query: 130 TMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAK 189
++ G+Q+H G S ++S+ +L++ Y + + +A F Q+ + V W +
Sbjct: 552 IQALDQGRQIHAQSCLSGYSDDLSIGNALVSLYARCGKVREAYAAFDQIYAKDNVSWNSL 611
Query: 190 IVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIG 249
+ + G+F + N F +M + ++ NS+TF S + A + + G+Q+H I K G
Sbjct: 612 VSGFAQSGYFEEALNIFAQMNKAGLEINSFTFGSAVSAAANIAN-VRIGKQIHGMIRKTG 670
Query: 250 LESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFL 309
+S+ V L+ +Y KC + D SWN+M+ GY ++G EA K
Sbjct: 671 YDSETEVSNALITLYAKCGTIDDI--------------SWNSMITGYSQHGCGFEALKLF 716
Query: 310 YLMKASGIQIQESLINDLRIACSSI 334
MK + + ACS +
Sbjct: 717 EDMKQLDVLPNHVTFVGVLSACSHV 741
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 125/269 (46%), Gaps = 26/269 (9%)
Query: 12 MYTCLIKECTFQKDSAGAFELLNHIRKRV---NIKPTLLFLNRLLLMHVSCGQLDTARQL 68
++ +++ C+ +A +F + I + + + N L+ ++ G L +A+++
Sbjct: 165 IFAVVLRGCS---GNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKV 221
Query: 69 FDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACV 128
F+ + RD SW MI G +E + LF ++ VL AC
Sbjct: 222 FENLKARDSVSWVAMISGLSQNGYEEEAMLLFCQI-------------------VLSACT 262
Query: 129 CTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTA 188
E GKQ+HGL+ K G S + +L+ Y + L A+ +F + + + V + +
Sbjct: 263 KVEFFEFGKQLHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNS 322
Query: 189 KIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKI 248
I ++G+ ++ FK+M + K + T +S+L AC V N G+Q H+ +K
Sbjct: 323 LISGLAQQGYINRALALFKKMNLDCQKPDCVTVASLLSACASVGALPN-GKQFHSYAIKA 381
Query: 249 GLESDEYVQCGLVDMYGKCRLLRDAERVF 277
G+ SD V+ L+D+Y KC ++ A F
Sbjct: 382 GMTSDIVVEGSLLDLYVKCSDIKTAHEFF 410
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/249 (24%), Positives = 111/249 (44%), Gaps = 28/249 (11%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ ++ CG++ A FD++ +D SW ++ G+ ++E + +FA+M K
Sbjct: 578 NALVSLYARCGKVREAYAAFDQIYAKDNVSWNSLVSGFAQSGYFEEALNIFAQMNKAG-- 635
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
L ++ + A N+ +GKQ+HG++ K G ++ +LI Y K ++
Sbjct: 636 ---LEINSFTFGSAVSAAANIANVRIGKQIHGMIRKTGYDSETEVSNALITLYAKCGTID 692
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC- 228
D + W + I + G + F++M + + N TF VL AC
Sbjct: 693 D-------------ISWNSMITGYSQHGCGFEALKLFEDMKQLDVLPNHVTFVGVLSACS 739
Query: 229 --GGVDDDGNCGRQMHA--NIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
G VD+ + R M N+V E+ C +VD+ G+ LL A+R E + +
Sbjct: 740 HVGLVDEGISYFRSMSEAHNLVP----KPEHYAC-VVDLLGRSGLLSRAKRFVEEMPIQP 794
Query: 285 NIASWNAML 293
+ W +L
Sbjct: 795 DAMVWRTLL 803
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 72/290 (24%), Positives = 125/290 (43%), Gaps = 28/290 (9%)
Query: 51 RLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGH 110
+L+ +++ G L+ A +FDEMP+R + W + ++ LF M+ +
Sbjct: 102 KLIDFYLAFGDLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKN--- 158
Query: 111 MLLVFPAWIIVCVLKACVC-TMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ F I VL+ C ++ +Q+H G + + LI+ Y K L
Sbjct: 159 --VEFDERIFAVVLRGCSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLS 216
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A VF LK ++V W A I + G+ + F ++ VL AC
Sbjct: 217 SAKKVFENLKARDSVSWVAMISGLSQNGYEEEAMLLFCQI--------------VLSACT 262
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
V + G+Q+H ++K G S+ YV LV +Y + L AE++F + + + S+
Sbjct: 263 KV-EFFEFGKQLHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRV-SY 320
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQES---LINDLRIACSSISA 336
N+++ G + G A L L K + Q+ + L AC+S+ A
Sbjct: 321 NSLISGLAQQGYINRA---LALFKKMNLDCQKPDCVTVASLLSACASVGA 367
>gi|255542944|ref|XP_002512535.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548496|gb|EEF49987.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 387
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/277 (28%), Positives = 136/277 (49%), Gaps = 9/277 (3%)
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI 119
G + AR +FDEM RD +W VMI GY ++ ++F +M+ + A+
Sbjct: 8 GLVREARNVFDEMLERDVVAWTVMIAGYASCNEHAYAWSMFCDMVASEMNP-----NAFT 62
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK-FRCLEDADFVFSQL 178
I VLKAC ++ G VHG K G +I + +L++ Y + +A VF +
Sbjct: 63 ISSVLKACKGMKSLSCGTLVHGFAIKHGIEGSIFVDNALMDAYATCCVSMREACLVFCGI 122
Query: 179 KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCG 238
+ N V WT I +G H F++M E + N Y+FS ++AC + N G
Sbjct: 123 EVKNAVSWTTLIAGYTHKGDGHLGLQIFRQMLLEEEECNPYSFSIAVRACASIGSH-NFG 181
Query: 239 RQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIR 298
+Q+HA ++K G E V ++DMY +C L +A + F + ++++ +WN ++ GY R
Sbjct: 182 KQIHAAVIKHGCEFSLPVMNSILDMYCRCGRLPEANQYFHEMT-RRDLITWNTIIAGYER 240
Query: 299 NGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
+ +EA MK +G + + AC++++
Sbjct: 241 SD-SIEALFIFSEMKLNGFDPDCNTFTSVTAACANLA 276
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 74/293 (25%), Positives = 137/293 (46%), Gaps = 9/293 (3%)
Query: 41 NIKPTLLFLNRLLLMHVSCG-QLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITL 99
I+ ++ N L+ + +C + A +F + +++ SW +I GY D + +
Sbjct: 90 GIEGSIFVDNALMDAYATCCVSMREACLVFCGIEVKNAVSWTTLIAGYTHKGDGHLGLQI 149
Query: 100 FAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLI 159
F +M+ ++ F ++AC + GKQ+H + K G ++ + S++
Sbjct: 150 FRQMLLEEEECNPYSFSI-----AVRACASIGSHNFGKQIHAAVIKHGCEFSLPVMNSIL 204
Query: 160 NFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSY 219
+ Y + L +A+ F ++ R + + W I R +F F EM +
Sbjct: 205 DMYCRCGRLPEANQYFHEMTRRDLITWNTIIAGYERSDSIEALF-IFSEMKLNGFDPDCN 263
Query: 220 TFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFEL 279
TF+SV AC + +CG+Q+H I++ GL+ D + L+DMY KC ++ D+ ++F
Sbjct: 264 TFTSVTAACANLAVL-SCGQQVHGGIIQKGLDKDLILANALIDMYAKCGIITDSRKIFSE 322
Query: 280 IVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+ KN+ SW +M++GY +G E + M SGI+ + ACS
Sbjct: 323 L-SCKNLVSWTSMMIGYGAHGFGREVVELFDEMVESGIKPDHIAFMAVLSACS 374
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 94/193 (48%), Gaps = 8/193 (4%)
Query: 45 TLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMM 104
+L +N +L M+ CG+L A Q F EM RD +W +I GY + +D E + +F+EM
Sbjct: 196 SLPVMNSILDMYCRCGRLPEANQYFHEMTRRDLITWNTIIAGY-ERSDSIEALFIFSEMK 254
Query: 105 KRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
F + V AC + G+QVHG + + G +++ L +LI+ Y K
Sbjct: 255 LNGFDPDCNTFTS-----VTAACANLAVLSCGQQVHGGIIQKGLDKDLILANALIDMYAK 309
Query: 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
+ D+ +FS+L N V WT+ ++ G +V F EM IK + F +V
Sbjct: 310 CGIITDSRKIFSELSCKNLVSWTSMMIGYGAHGFGREVVELFDEMVESGIKPDHIAFMAV 369
Query: 225 LKAC--GGVDDDG 235
L AC G+ D G
Sbjct: 370 LSACSHAGLVDQG 382
>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
Length = 723
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 82/287 (28%), Positives = 142/287 (49%), Gaps = 11/287 (3%)
Query: 52 LLLMHVSC---GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVAD-YQECITLFAEMMKRK 107
L+ M+ C G +D AR++FD MP+ + SW +I GYV +E I LF EM++ +
Sbjct: 186 LVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQGQ 245
Query: 108 KGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
F + VLKAC ++ LG+QV+ L+ K+ + + SLI+ Y +
Sbjct: 246 VKPNHFTFSS-----VLKACANLSDIWLGEQVYALVVKMRLASINCVGNSLISMYSRCGN 300
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
+E+A F L N V + + + + + F F E+ N++TF+S+L
Sbjct: 301 MENARKAFDVLFEKNLVSYNTIVNAYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSG 360
Query: 228 CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
+ G G Q+H+ I+K G +S+ ++ L+ MY +C + A +VF + D N+
Sbjct: 361 ASSIGAIGK-GEQIHSRILKSGFKSNLHICNALISMYSRCGNIEAAFQVFNEMGD-GNVI 418
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
SW +M+ G+ ++G A + + M +G+ E + ACS +
Sbjct: 419 SWTSMITGFAKHGFATRALETFHKMLEAGVSPNEVTYIAVLSACSHV 465
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 82/281 (29%), Positives = 143/281 (50%), Gaps = 11/281 (3%)
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI 119
G L++A ++FD MP R+ +W +MI + + ++ + LF +M+ V +
Sbjct: 93 GDLESAYKVFDRMPDRNVVTWTLMITRFQQLGFSRDAVDLFLDMVLSG-----YVPDRFT 147
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF---RCLEDADFVFS 176
+ V+ AC + LG+Q H L+ K G ++ + SL++ Y K ++DA VF
Sbjct: 148 LSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVDDARKVFD 207
Query: 177 QLKRHNTVVWTAKIVNNCREGHF-HQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDG 235
++ HN + WTA I + G + F EM + ++K N +TFSSVLKAC + D
Sbjct: 208 RMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSSVLKACANLSDIW 267
Query: 236 NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
G Q++A +VK+ L S V L+ MY +C + +A + F+++ + KN+ S+N ++
Sbjct: 268 -LGEQVYALVVKMRLASINCVGNSLISMYSRCGNMENARKAFDVLFE-KNLVSYNTIVNA 325
Query: 296 YIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
Y ++ EA + ++ +G + L SSI A
Sbjct: 326 YAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGASSIGA 366
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 78/270 (28%), Positives = 127/270 (47%), Gaps = 19/270 (7%)
Query: 75 RDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTMNM 133
RD SW+ +I Y + E I+ F +M++ +P + V +AC N+
Sbjct: 5 RDLVSWSALISCYANNEKAFEAISAFFDMLE------CGFYPNEYCFTGVFRACSNKENI 58
Query: 134 ELGKQVHGLLFKLGS-SRNISLTGSLINFYGKFRC-LEDADFVFSQLKRHNTVVWTAKIV 191
LGK + G L K G ++ + +LI+ + K LE A VF ++ N V WT I
Sbjct: 59 SLGKIIFGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMIT 118
Query: 192 NNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDG--NCGRQMHANIVKIG 249
+ G + F +M + +T S V+ AC + G + GRQ H ++K G
Sbjct: 119 RFQQLGFSRDAVDLFLDMVLSGYVPDRFTLSGVVSACA---EMGLLSLGRQFHCLVMKSG 175
Query: 250 LESDEYVQCGLVDMYGKCRL---LRDAERVFELIVDKKNIASWNAMLVGYIRN-GLYVEA 305
L+ D V C LVDMY KC + DA +VF+ + N+ SW A++ GY+++ G EA
Sbjct: 176 LDLDVCVGCSLVDMYAKCVADGSVDDARKVFDRM-PVHNVMSWTAIITGYVQSGGCDREA 234
Query: 306 TKFLYLMKASGIQIQESLINDLRIACSSIS 335
+ M ++ + + AC+++S
Sbjct: 235 IELFLEMVQGQVKPNHFTFSSVLKACANLS 264
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 100/225 (44%), Gaps = 7/225 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ CG ++ AR+ FD + ++ S+ ++ Y + +E LF E+ G
Sbjct: 289 NSLISMYSRCGNMENARKAFDVLFEKNLVSYNTIVNAYAKSLNSEEAFELFNEIEGAGTG 348
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
A+ +L + G+Q+H + K G N+ + +LI+ Y + +E
Sbjct: 349 -----VNAFTFASLLSGASSIGAIGKGEQIHSRILKSGFKSNLHICNALISMYSRCGNIE 403
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A VF+++ N + WT+ I + G + F +M + N T+ +VL AC
Sbjct: 404 AAFQVFNEMGDGNVISWTSMITGFAKHGFATRALETFHKMLEAGVSPNEVTYIAVLSACS 463
Query: 230 GVDDDGNCGRQMHANIVKIGLESD-EYVQCGLVDMYGKCRLLRDA 273
V + + V+ G+ E+ C +VD+ G+ L +A
Sbjct: 464 HVGLISEGLKHFKSMKVEHGIVPRMEHYAC-VVDLLGRSGHLEEA 507
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 45/106 (42%), Gaps = 10/106 (9%)
Query: 26 SAGAFELLNHIRKRV---NIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAV 82
S GA I R+ K L N L+ M+ CG ++ A Q+F+EM + SW
Sbjct: 363 SIGAIGKGEQIHSRILKSGFKSNLHICNALISMYSRCGNIEAAFQVFNEMGDGNVISWTS 422
Query: 83 MIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWII-VCVLKAC 127
MI G+ + F +M++ V P + + VL AC
Sbjct: 423 MITGFAKHGFATRALETFHKMLEAG------VSPNEVTYIAVLSAC 462
>gi|297804022|ref|XP_002869895.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297315731|gb|EFH46154.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 853
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 87/313 (27%), Positives = 151/313 (48%), Gaps = 11/313 (3%)
Query: 4 LCLPITTDMYT--CLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQ 61
LC ++ D+ T CL+K C K+ G E L+ + + + L+ ++ G+
Sbjct: 126 LCFGVSPDVSTFPCLVKACVALKNFKG-IEFLSDTVSSLGMDCNEFVASSLIKAYLEYGK 184
Query: 62 LDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIV 121
+D A +LFD + +D W VM+ GY I F+ M + + F
Sbjct: 185 IDVAGKLFDRVLQKDCVIWNVMLNGYAKCGASDSVIKGFSLMRMDQISPNAVTFD----- 239
Query: 122 CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH 181
CVL C + ++LG Q+HGL+ G S+ SL++ Y K +DA +F + R
Sbjct: 240 CVLSVCASKLLIDLGVQLHGLVVVSGLDFEGSIKNSLLSMYSKCGRFDDAIKLFRMMSRA 299
Query: 182 NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQM 241
+TV W I + G + F EM + ++ TFSS+L + ++ C RQ+
Sbjct: 300 DTVTWNCMISGYVQSGLMEESLIFFYEMISSGVLPDAITFSSLLPSVSKFENLEYC-RQI 358
Query: 242 HANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGL 301
H I++ + D ++ L+D Y KCR + A+++F + ++ + AM+ GY+ NGL
Sbjct: 359 HCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQKIFSQ-CNSVDVVVFTAMISGYLHNGL 417
Query: 302 YVEATK-FLYLMK 313
++A + F +L+K
Sbjct: 418 NIDALEMFRWLVK 430
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 86/288 (29%), Positives = 133/288 (46%), Gaps = 9/288 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N LL M+ CG+ D A +LF M D +W MI GYV +E + F EM+
Sbjct: 274 NSLLSMYSKCGRFDDAIKLFRMMSRADTVTWNCMISGYVQSGLMEESLIFFYEMISSG-- 331
Query: 110 HMLLVFPAWIIVCVLKACVCTM-NMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
V P I L V N+E +Q+H + + S +I LT +LI+ Y K R +
Sbjct: 332 ----VLPDAITFSSLLPSVSKFENLEYCRQIHCYIMRHSISLDIFLTSALIDAYFKCRGV 387
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
A +FSQ + VV+TA I G F+ + + +I N T S+L
Sbjct: 388 SMAQKIFSQCNSVDVVVFTAMISGYLHNGLNIDALEMFRWLVKVKISPNEITLVSILPVI 447
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
GG+ GR++H I+K G ++ + C ++DMY KC + A +F + K++I S
Sbjct: 448 GGLLAL-KLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFGRL-SKRDIVS 505
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
WN+M+ ++ A M SGI I+ AC+++ +
Sbjct: 506 WNSMITRCAQSDNPSAAIDIFRQMGVSGICFDCVSISAALSACANLPS 553
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 70/282 (24%), Positives = 135/282 (47%), Gaps = 15/282 (5%)
Query: 26 SAGAFELLNHIRK------RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNS 79
S FE L + R+ R +I + + L+ + C + A+++F + D
Sbjct: 345 SVSKFENLEYCRQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQKIFSQCNSVDVVV 404
Query: 80 WAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI-IVCVLKACVCTMNMELGKQ 138
+ MI GY+ + + +F ++K K + P I +V +L + ++LG++
Sbjct: 405 FTAMISGYLHNGLNIDALEMFRWLVKVK------ISPNEITLVSILPVIGGLLALKLGRE 458
Query: 139 VHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGH 198
+HG + K G ++ ++I+ Y K + A +F +L + + V W + I + +
Sbjct: 459 LHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFGRLSKRDIVSWNSMITRCAQSDN 518
Query: 199 FHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQC 258
+ F++MG I + + S+ L AC + + + G+ +H ++K L D Y +
Sbjct: 519 PSAAIDIFRQMGVSGICFDCVSISAALSACANLPSE-SFGKAIHGFMIKHSLALDVYSES 577
Query: 259 GLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
L+DMY KC L+ A VF+ + +KNI SWN+++ Y +G
Sbjct: 578 TLIDMYAKCGNLKAAMNVFD-TMKEKNIVSWNSIIAAYGNHG 618
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 96/240 (40%), Gaps = 6/240 (2%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+ CG+++ A ++F + RD SW MI + I +F +M G +
Sbjct: 481 MYAKCGRMNLAYEIFGRLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQM-----GVSGIC 535
Query: 115 FPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFV 174
F I L AC + GK +HG + K + ++ +LI+ Y K L+ A V
Sbjct: 536 FDCVSISAALSACANLPSESFGKAIHGFMIKHSLALDVYSESTLIDMYAKCGNLKAAMNV 595
Query: 175 FSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEM-GRERIKKNSYTFSSVLKACGGVDD 233
F +K N V W + I G F EM + + + TF ++ C V D
Sbjct: 596 FDTMKEKNIVSWNSIIAAYGNHGKLKDSLCLFHEMVEKSGNRPDQITFLEIISLCCHVGD 655
Query: 234 DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
R + G++ + +VD++G+ L +A + + + W +L
Sbjct: 656 VDEGVRFFRSMTQDYGIQPQQEHYACVVDLFGRAGRLSEAYETVKSMPFPPDAGVWGTLL 715
Score = 42.0 bits (97), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK-KNIASWNAMLVGY 296
G+Q+HA ++ + D Y ++ MY C + ++F + + +I WN+++ +
Sbjct: 50 GKQVHAFVIVNRISGDSYTDERILGMYAMCGSFSNCGKMFYRLDSRLSSIRPWNSIISSF 109
Query: 297 IRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
+R GL +A F + M G+ S L AC ++
Sbjct: 110 VRMGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVAL 147
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 43/213 (20%), Positives = 88/213 (41%), Gaps = 4/213 (1%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
+L+ C + GKQVH + S + ++ Y + +F +L
Sbjct: 37 LLQDCSNLTLLRQGKQVHAFVIVNRISGDSYTDERILGMYAMCGSFSNCGKMFYRLDSRL 96
Query: 183 TVV--WTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQ 240
+ + W + I + R G +Q + +M + + TF ++KAC + +
Sbjct: 97 SSIRPWNSIISSFVRMGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFKGI-EF 155
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
+ + +G++ +E+V L+ Y + + A ++F+ ++ +K+ WN ML GY + G
Sbjct: 156 LSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVAGKLFDRVL-QKDCVIWNVMLNGYAKCG 214
Query: 301 LYVEATKFLYLMKASGIQIQESLINDLRIACSS 333
K LM+ I + + C+S
Sbjct: 215 ASDSVIKGFSLMRMDQISPNAVTFDCVLSVCAS 247
>gi|356510758|ref|XP_003524101.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
mitochondrial-like [Glycine max]
Length = 854
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 85/289 (29%), Positives = 138/289 (47%), Gaps = 12/289 (4%)
Query: 44 PTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEM 103
P N L+ M+V L+ A+ LFD+MP R+ SW MI Y + + L A M
Sbjct: 318 PKTFLTNILINMYVKFNLLEEAQVLFDKMPERNVVSWTTMISAYSNAQLNDRAMRLLAFM 377
Query: 104 MKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYG 163
+ + F + VL+AC ++ KQ+H + K+G ++ + +LI+ Y
Sbjct: 378 FRDGVMPNMFTFSS-----VLRACERLYDL---KQLHSWIMKVGLESDVFVRSALIDVYS 429
Query: 164 KFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSS 223
K L +A VF ++ ++VVW + I + + + +K M R + T +S
Sbjct: 430 KMGELLEALKVFREMMTGDSVVWNSIIAAFAQHSDGDEALHLYKSMRRVGFPADQSTLTS 489
Query: 224 VLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
VL+AC + GRQ H +++K + D + L+DMY KC L DA+ +F + K
Sbjct: 490 VLRACTSL-SLLELGRQAHVHVLK--FDQDLILNNALLDMYCKCGSLEDAKFIFNRMA-K 545
Query: 284 KNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
K++ SW+ M+ G +NG +EA MK G + I + ACS
Sbjct: 546 KDVISWSTMIAGLAQNGFSMEALNLFESMKVQGPKPNHITILGVLFACS 594
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 109/213 (51%), Gaps = 5/213 (2%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
++K C+ + GK+VH +F G LT LIN Y KF LE+A +F ++ N
Sbjct: 291 LIKCCLAHGAVREGKRVHRHIFSNGYHPKTFLTNILINMYVKFNLLEEAQVLFDKMPERN 350
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
V WT I + M R+ + N +TFSSVL+AC + D +Q+H
Sbjct: 351 VVSWTTMISAYSNAQLNDRAMRLLAFMFRDGVMPNMFTFSSVLRACERLYD----LKQLH 406
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
+ I+K+GLESD +V+ L+D+Y K L +A +VF ++ ++ WN+++ + ++
Sbjct: 407 SWIMKVGLESDVFVRSALIDVYSKMGELLEALKVFREMMTGDSVV-WNSIIAAFAQHSDG 465
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
EA M+ G +S + + AC+S+S
Sbjct: 466 DEALHLYKSMRRVGFPADQSTLTSVLRACTSLS 498
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 123/259 (47%), Gaps = 15/259 (5%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
+V ++ + + L+ ++ G+L A ++F EM D W +I + +D E +
Sbjct: 411 KVGLESDVFVRSALIDVYSKMGELLEALKVFREMMTGDSVVWNSIIAAFAQHSDGDEALH 470
Query: 99 LFAEMMKRKKGHMLLVFPA--WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTG 156
L+ M R+ G FPA + VL+AC +ELG+Q H + K +++ L
Sbjct: 471 LYKSM--RRVG-----FPADQSTLTSVLRACTSLSLLELGRQAHVHVLKF--DQDLILNN 521
Query: 157 SLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKK 216
+L++ Y K LEDA F+F+++ + + + W+ I + G + N F+ M + K
Sbjct: 522 ALLDMYCKCGSLEDAKFIFNRMAKKDVISWSTMIAGLAQNGFSMEALNLFESMKVQGPKP 581
Query: 217 NSYTFSSVLKAC--GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAE 274
N T VL AC G+ ++G + N+ I E+ C ++D+ G+ L D
Sbjct: 582 NHITILGVLFACSHAGLVNEGWYYFRSMNNLYGID-PGREHYGC-MLDLLGRAEKLDDMV 639
Query: 275 RVFELIVDKKNIASWNAML 293
++ + + ++ +W +L
Sbjct: 640 KLIHEMNCEPDVVTWRTLL 658
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 71/162 (43%), Gaps = 8/162 (4%)
Query: 176 SQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC---GGVD 232
S + H T ++N+C + M R + +S T+S ++K C G V
Sbjct: 243 SLVSPHYVPPETESLLNHCYRRDLPSAMHVLDSMERRGVWADSITYSELIKCCLAHGAVR 302
Query: 233 DDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAM 292
+ G+++H +I G ++ L++MY K LL +A+ +F+ + + +N+ SW M
Sbjct: 303 E----GKRVHRHIFSNGYHPKTFLTNILINMYVKFNLLEEAQVLFDKMPE-RNVVSWTTM 357
Query: 293 LVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
+ Y L A + L M G+ + + AC +
Sbjct: 358 ISAYSNAQLNDRAMRLLAFMFRDGVMPNMFTFSSVLRACERL 399
>gi|225433487|ref|XP_002264838.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06140,
mitochondrial [Vitis vinifera]
gi|298205230|emb|CBI17289.3| unnamed protein product [Vitis vinifera]
Length = 688
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/264 (30%), Positives = 137/264 (51%), Gaps = 8/264 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ ++ G L+ A ++F+E+PL++ W VMI G+++ ++ LF+ M R+ G
Sbjct: 154 LMNVYTELGSLEEAHKVFEEVPLKNSVIWGVMIKGHLNFSEEFGVFELFSRM--RRSGFE 211
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGS-SRNISLTGSLINFYGKFRCLED 170
L F ++ +++AC + GK HGL K N L SL++ Y K L+
Sbjct: 212 LDPF---VVEGLIQACGNVYAGKEGKTFHGLCIKKNFIDSNFFLQTSLVDMYMKCGFLDF 268
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
A +F ++ + VVW+A I R G + + F++M + + NS TF+S++ AC
Sbjct: 269 ALKLFEEISYRDVVVWSAIIAGFARNGRALESISMFRQMLADSVTPNSVTFASIVLACSS 328
Query: 231 VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWN 290
+ GR +H +++ G+E D +DMY KC + A RVF + +KN+ SW+
Sbjct: 329 LGSLKQ-GRSVHGYMIRNGVELDVKNYTSFIDMYAKCGCIVTAYRVF-CQIPEKNVFSWS 386
Query: 291 AMLVGYIRNGLYVEATKFLYLMKA 314
M+ G+ +GL EA Y M++
Sbjct: 387 TMINGFGMHGLCAEALNLFYEMRS 410
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 76/295 (25%), Positives = 138/295 (46%), Gaps = 8/295 (2%)
Query: 45 TLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMM 104
+LLF + ++ G L A + F+ + + +SW ++ + + + + LF M+
Sbjct: 46 SLLFGPMIFGAYIQLGSLHVASKAFNHITFENLHSWNTILASHSKNKCFYDVLQLFKRML 105
Query: 105 KRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
K K + ++ +V +KAC + K H L KL + + +L+N Y +
Sbjct: 106 KEGK-----LVDSFNLVFAVKACFGLSLFQGAKLFHSLAIKLRLEGDPYVAPALMNVYTE 160
Query: 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
LE+A VF ++ N+V+W I + VF F M R + + + +
Sbjct: 161 LGSLEEAHKVFEEVPLKNSVIWGVMIKGHLNFSEEFGVFELFSRMRRSGFELDPFVVEGL 220
Query: 225 LKACGGVDDDGNCGRQMHANIVKIG-LESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
++ACG V G G+ H +K ++S+ ++Q LVDMY KC L A ++FE I
Sbjct: 221 IQACGNV-YAGKEGKTFHGLCIKKNFIDSNFFLQTSLVDMYMKCGFLDFALKLFEEI-SY 278
Query: 284 KNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASK 338
+++ W+A++ G+ RNG +E+ M A + + +ACSS+ + K
Sbjct: 279 RDVVVWSAIIAGFARNGRALESISMFRQMLADSVTPNSVTFASIVLACSSLGSLK 333
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 116/259 (44%), Gaps = 11/259 (4%)
Query: 38 KRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECI 97
K+ I L+ M++ CG LD A +LF+E+ RD W+ +I G+ E I
Sbjct: 242 KKNFIDSNFFLQTSLVDMYMKCGFLDFALKLFEEISYRDVVVWSAIIAGFARNGRALESI 301
Query: 98 TLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGS 157
++F +M+ + F + ++ AC +++ G+ VHG + + G ++ S
Sbjct: 302 SMFRQMLADSVTPNSVTFASIVL-----ACSSLGSLKQGRSVHGYMIRNGVELDVKNYTS 356
Query: 158 LINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKN 217
I+ Y K C+ A VF Q+ N W+ I G + N F EM N
Sbjct: 357 FIDMYAKCGCIVTAYRVFCQIPEKNVFSWSTMINGFGMHGLCAEALNLFYEMRSVNQLPN 416
Query: 218 SYTFSSVLKAC---GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAE 274
S TF SVL AC G +++ + + M + +E E+ C +VD+ G+ + +A
Sbjct: 417 SVTFVSVLSACSHSGRIEEGWSHFKSMSRDYGITPVE--EHYAC-MVDLLGRAGKIDEAL 473
Query: 275 RVFELIVDKKNIASWNAML 293
+ + ++W A+L
Sbjct: 474 SFINNMPTEPGASAWGALL 492
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 83/189 (43%), Gaps = 2/189 (1%)
Query: 150 RNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEM 209
R++ + Y + L A F+ + N W + ++ + F+ V FK M
Sbjct: 45 RSLLFGPMIFGAYIQLGSLHVASKAFNHITFENLHSWNTILASHSKNKCFYDVLQLFKRM 104
Query: 210 GRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRL 269
+E +S+ +KAC G+ + H+ +K+ LE D YV L+++Y +
Sbjct: 105 LKEGKLVDSFNLVFAVKACFGL-SLFQGAKLFHSLAIKLRLEGDPYVAPALMNVYTELGS 163
Query: 270 LRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRI 329
L +A +VFE V KN W M+ G++ + M+ SG ++ ++ L
Sbjct: 164 LEEAHKVFEE-VPLKNSVIWGVMIKGHLNFSEEFGVFELFSRMRRSGFELDPFVVEGLIQ 222
Query: 330 ACSSISASK 338
AC ++ A K
Sbjct: 223 ACGNVYAGK 231
>gi|297741128|emb|CBI31859.3| unnamed protein product [Vitis vinifera]
Length = 514
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 82/297 (27%), Positives = 137/297 (46%), Gaps = 13/297 (4%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
++ + L N L+ M+ CGQL A+++FD M RD SW +I GY Y+E +
Sbjct: 52 KLGFESYLFVSNALIHMYAMCGQLGFAQKMFDGMLDRDLVSWNTLICGYSQYNKYKEVLR 111
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
LF M + A +V ++ AC + E + + + ++ L +L
Sbjct: 112 LFDAMTAAN-----IKADAVTMVKIILACSHLGDWEFADSMVKYIKENNLEIDVYLGNTL 166
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
I+ YG+ L A +F + + + + WT+ I + F F+EM ++K +
Sbjct: 167 IDMYGRLGNLTAARKLFDNMPKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAKVKPDK 226
Query: 219 YTFSSVLKAC---GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAER 275
T +SVL AC G +D G +H I + G+++D YV L+DMY KC ++ A
Sbjct: 227 VTVASVLSACAHLGKLD----VGWAVHHYIRRHGVQADIYVGNSLIDMYCKCGMVEKALE 282
Query: 276 VFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
VF + DK ++ SW +++ G NG A M G+Q + +AC+
Sbjct: 283 VFHRMKDKDSV-SWTSVISGLAVNGFANSALDLFSQMLREGVQPTHGTFVGILLACA 338
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 78/249 (31%), Positives = 119/249 (47%), Gaps = 22/249 (8%)
Query: 16 LIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLR 75
+I C+ D A ++ +I++ N++ + N L+ M+ G L AR+LFD MP R
Sbjct: 131 IILACSHLGDWEFADSMVKYIKEN-NLEIDVYLGNTLIDMYGRLGNLTAARKLFDNMPKR 189
Query: 76 DFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVC-VLKACVCTMNME 134
D SW MI GY + + + + LF EMM K V P + V VL AC ++
Sbjct: 190 DVISWTSMITGYSQASQFSDAVKLFQEMMAAK------VKPDKVTVASVLSACAHLGKLD 243
Query: 135 LGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNC 194
+G VH + + G +I + SLI+ Y K +E A VF ++K ++V WT+ I
Sbjct: 244 VGWAVHHYIRRHGVQADIYVGNSLIDMYCKCGMVEKALEVFHRMKDKDSVSWTSVISGLA 303
Query: 195 REGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDE 254
G + + F +M RE ++ TF +L AC HA +V GLE E
Sbjct: 304 VNGFANSALDLFSQMLREGVQPTHGTFVGILLACA------------HAGLVNKGLEYFE 351
Query: 255 YVQC--GLV 261
++ GLV
Sbjct: 352 SMESVHGLV 360
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 104/241 (43%), Gaps = 7/241 (2%)
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMEL-----GKQVHGLLFKLGSSRNIS 153
+++ +R+K H L + A A V + + +H KLG +
Sbjct: 1 MYSPCDRRQKSHFLFIIVALSSTIAPAALVVALTTNINASTISSSIHVHALKLGFESYLF 60
Query: 154 LTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRER 213
++ +LI+ Y L A +F + + V W I + + +V F M
Sbjct: 61 VSNALIHMYAMCGQLGFAQKMFDGMLDRDLVSWNTLICGYSQYNKYKEVLRLFDAMTAAN 120
Query: 214 IKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDA 273
IK ++ T ++ AC + D M I + LE D Y+ L+DMYG+ L A
Sbjct: 121 IKADAVTMVKIILACSHL-GDWEFADSMVKYIKENNLEIDVYLGNTLIDMYGRLGNLTAA 179
Query: 274 ERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSS 333
++F+ + K+++ SW +M+ GY + + +A K M A+ ++ + + + AC+
Sbjct: 180 RKLFDNM-PKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAKVKPDKVTVASVLSACAH 238
Query: 334 I 334
+
Sbjct: 239 L 239
>gi|255587181|ref|XP_002534168.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223525755|gb|EEF28217.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 513
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/275 (28%), Positives = 138/275 (50%), Gaps = 15/275 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N ++ + G+L+ AR+LF+E P +D +W M+ GYV E ++F +M ++
Sbjct: 247 NTMITGYAQNGELEEARKLFEESPTQDVFTWTAMVSGYVQNGMVDEARSIFDKMPEKNS- 305
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+W ++ V M++ K+ LF+ RNIS ++I Y + +
Sbjct: 306 ------VSW--NAMIAGYVQCKRMDMAKE----LFEAMPFRNISSWNTMITGYAQSGNVP 353
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A +F ++ + +++ W+A I + G + + + EM R+ N +F+SVL AC
Sbjct: 354 HARNLFDRMPQRDSISWSAMIAGYVQNGCNEEAVHLYVEMKRDGESLNRSSFTSVLTACA 413
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ + G+Q H +VK+G ++ YV L+ MY KC + +A+ F I D K++ SW
Sbjct: 414 DI-AALDLGKQFHGWLVKVGYQTGCYVGNALLAMYCKCGSIDEADDAFHEITD-KDLISW 471
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLI 324
N M+ GY R+G EA MK G++ E+ +
Sbjct: 472 NTMIYGYARHGFGKEALIVFESMKTVGVKPDEATM 506
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 79/175 (45%), Gaps = 5/175 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N ++ + G + AR LFD MP RD SW+ MI GYV +E + L+ EM + +
Sbjct: 340 NTMITGYAQSGNVPHARNLFDRMPQRDSISWSAMIAGYVQNGCNEEAVHLYVEMKRDGES 399
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
F VL AC ++LGKQ HG L K+G + +L+ Y K ++
Sbjct: 400 LNRSSF-----TSVLTACADIAALDLGKQFHGWLVKVGYQTGCYVGNALLAMYCKCGSID 454
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
+AD F ++ + + W I R G + F+ M +K + T +V
Sbjct: 455 EADDAFHEITDKDLISWNTMIYGYARHGFGKEALIVFESMKTVGVKPDEATMVTV 509
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 80/352 (22%), Positives = 143/352 (40%), Gaps = 54/352 (15%)
Query: 29 AFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYV 88
A ++ N + +R + N ++ ++S G+ D AR++FD+MP RD +W VM+ GYV
Sbjct: 76 ALQVFNTMPRRSTVT-----YNAMISGYLSNGRFDLAREMFDKMPERDLFTWNVMLSGYV 130
Query: 89 DVADYQECITLFAEMMKR---KKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLL-- 143
+ + LF M +R ML + + + M ++ +GLL
Sbjct: 131 RNKNLTDARGLFERMPRRDVVSWNAMLSGYAQNGFIAEAREIFDEMPVKNSISWNGLLAA 190
Query: 144 -------------FKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKI 190
F+ ++ L+ + K + L DA VF ++ + V W I
Sbjct: 191 YVQNGRIEDARRLFESKMDWDVVSWNCLMGGFVKKKRLVDARRVFDRIPVRDEVSWNTMI 250
Query: 191 VNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC---GGVDDDGNCGRQM-HANIV 246
+ G + F+E + + +T+++++ G VD+ + +M N V
Sbjct: 251 TGYAQNGELEEARKLFEESPTQDV----FTWTAMVSGYVQNGMVDEARSIFDKMPEKNSV 306
Query: 247 KIGLESDEYVQCGLVDM----------------------YGKCRLLRDAERVFELIVDKK 284
YVQC +DM Y + + A +F+ + +
Sbjct: 307 SWNAMIAGYVQCKRMDMAKELFEAMPFRNISSWNTMITGYAQSGNVPHARNLFDRMPQRD 366
Query: 285 NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+I SW+AM+ GY++NG EA MK G + S + AC+ I+A
Sbjct: 367 SI-SWSAMIAGYVQNGCNEEAVHLYVEMKRDGESLNRSSFTSVLTACADIAA 417
Score = 45.1 bits (105), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 14/128 (10%)
Query: 184 VVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDG--NCGRQM 241
V W I + R G H F M R +++ T+++++ G +G + R+M
Sbjct: 58 VNWNMAITTHMRNGQCHSALQVFNTMPR----RSTVTYNAMI---SGYLSNGRFDLAREM 110
Query: 242 HANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGL 301
+ E D + ++ Y + + L DA +FE + ++++ SWNAML GY +NG
Sbjct: 111 FDKMP----ERDLFTWNVMLSGYVRNKNLTDARGLFERM-PRRDVVSWNAMLSGYAQNGF 165
Query: 302 YVEATKFL 309
EA +
Sbjct: 166 IAEAREIF 173
>gi|357129947|ref|XP_003566620.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
mitochondrial-like [Brachypodium distachyon]
Length = 902
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 88/300 (29%), Positives = 144/300 (48%), Gaps = 15/300 (5%)
Query: 42 IKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFA 101
+ +L N L MH G +D A+ LF+ + +D SW ++VG + +E I +
Sbjct: 332 MDASLFVANATLDMHSKFGAIDDAKTLFNLITYKDTVSWNALLVGLTHNEEDEEAIHMLK 391
Query: 102 EMMKRKKGHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLIN 160
M ++ V P + V+ AC E GKQ+H L K N ++ SLI+
Sbjct: 392 GM------NLDGVTPDEVSFATVINACSNIRATETGKQIHCLAMKHSICSNHAVGSSLID 445
Query: 161 FYGKFRCLEDADFVFSQLKRHNTV---VWTAKIVNNCREGHFHQVFNDFKEMGRERIKKN 217
FY K +E V +Q+ + V V A +V N RE + + F+++ R+ +K +
Sbjct: 446 FYSKHGDVESCRKVLAQVDASSIVPRNVLIAGLVQNNRE---DEAIDLFQQVLRDGLKPS 502
Query: 218 SYTFSSVLKACGGVDDDGNCGRQMHANIVKIG-LESDEYVQCGLVDMYGKCRLLRDAERV 276
S+TFSS+L C G+ G+Q+H +K G L D V LV Y K R+ DA ++
Sbjct: 503 SFTFSSILSGCTGLLSS-IIGKQVHCYTLKSGFLNDDTSVGVSLVGTYLKARMPEDANKL 561
Query: 277 FELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+ D KN+ W A++ GY +NG ++ + M++ + E + ACS ++A
Sbjct: 562 LIEMPDHKNLVEWTAIVSGYAQNGYSYQSLLSFWRMRSYDVHPDEVTFASILKACSEMTA 621
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/275 (27%), Positives = 131/275 (47%), Gaps = 8/275 (2%)
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI 119
G +++ R++ ++ V+I G V E I LF ++++ F +
Sbjct: 451 GDVESCRKVLAQVDASSIVPRNVLIAGLVQNNREDEAIDLFQQVLRDGLKPSSFTFSS-- 508
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTG-SLINFYGKFRCLEDADFVFSQL 178
+L C ++ +GKQVH K G + + G SL+ Y K R EDA+ + ++
Sbjct: 509 ---ILSGCTGLLSSIIGKQVHCYTLKSGFLNDDTSVGVSLVGTYLKARMPEDANKLLIEM 565
Query: 179 KRH-NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC 237
H N V WTA + + G+ +Q F M + + TF+S+LKAC + +
Sbjct: 566 PDHKNLVEWTAIVSGYAQNGYSYQSLLSFWRMRSYDVHPDEVTFASILKACSEMTALSD- 624
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYI 297
G+++H I+K G S + ++DMY KC + + F+ + K++I WN+M++G+
Sbjct: 625 GKEIHGLIIKSGFGSYKTATSAIIDMYSKCGDIISSFEAFKELKSKQDITLWNSMILGFA 684
Query: 298 RNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+NG EA M+ S I+ E + IAC+
Sbjct: 685 KNGYADEALLLFQKMQDSQIKSDEVTFLGVLIACA 719
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 85/283 (30%), Positives = 130/283 (45%), Gaps = 13/283 (4%)
Query: 60 GQLDTARQLFDEMPLRDFN-SWAVMIVGYVDVADYQ-ECITLFAEMMKRKKGHMLLVFPA 117
G+L+ AR L MP +W +I GY + + E L+ +M R G ++P
Sbjct: 146 GRLEDARTLLHRMPAPSSTVAWNAVISGYAQQSGIEHEVFGLYKDM--RCWG----LWPT 199
Query: 118 -WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFS 176
+L A G+QVH + G N+ + SLIN Y K C+ DA VF
Sbjct: 200 RSTFASMLSAAANATAFIEGRQVHAAAVRHGLDANVFVGSSLINLYAKCGCIGDAILVFD 259
Query: 177 QLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGN 236
N V+W A + R + + F M R ++ + +T+ SVL AC +D +
Sbjct: 260 CSGEKNVVMWNAMLNGLVRNEYQVEAIQMFLYMKRLGLEADEFTYVSVLGACAHLDS--H 317
Query: 237 C-GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
C GRQ+ +K +++ +V +DM+ K + DA+ +F LI K + SWNA+LVG
Sbjct: 318 CLGRQVQCVTIKNCMDASLFVANATLDMHSKFGAIDDAKTLFNLITYKDTV-SWNALLVG 376
Query: 296 YIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASK 338
N EA L M G+ E + ACS+I A++
Sbjct: 377 LTHNEEDEEAIHMLKGMNLDGVTPDEVSFATVINACSNIRATE 419
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 84/287 (29%), Positives = 129/287 (44%), Gaps = 44/287 (15%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ CG++ AR++F + L D WA MI GY +QE + LF M K
Sbjct: 72 LVNMYARCGRVGDARRVFGGISLPDTVCWASMISGYHRAGRFQEAVCLFTRMEKMGSSPD 131
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+ A +VC L A LG+ LEDA
Sbjct: 132 RVTCVA--VVCALTA--------LGR------------------------------LEDA 151
Query: 172 DFVFSQLK-RHNTVVWTAKIVNNCRE-GHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
+ ++ +TV W A I ++ G H+VF +K+M + TF+S+L A
Sbjct: 152 RTLLHRMPAPSSTVAWNAVISGYAQQSGIEHEVFGLYKDMRCWGLWPTRSTFASMLSAAA 211
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
GRQ+HA V+ GL+++ +V L+++Y KC + DA VF+ +KN+ W
Sbjct: 212 NATAFIE-GRQVHAAAVRHGLDANVFVGSSLINLYAKCGCIGDAILVFD-CSGEKNVVMW 269
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
NAML G +RN VEA + MK G++ E + AC+ + +
Sbjct: 270 NAMLNGLVRNEYQVEAIQMFLYMKRLGLEADEFTYVSVLGACAHLDS 316
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 67/302 (22%), Positives = 129/302 (42%), Gaps = 7/302 (2%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R + + + L+ ++ CG + A +FD ++ W M+ G V E I
Sbjct: 228 RHGLDANVFVGSSLINLYAKCGCIGDAILVFDCSGEKNVVMWNAMLNGLVRNEYQVEAIQ 287
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
+F MKR + L + V VL AC + LG+QV + K ++ + +
Sbjct: 288 MFL-YMKR----LGLEADEFTYVSVLGACAHLDSHCLGRQVQCVTIKNCMDASLFVANAT 342
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
++ + KF ++DA +F+ + +TV W A +V + + K M + + +
Sbjct: 343 LDMHSKFGAIDDAKTLFNLITYKDTVSWNALLVGLTHNEEDEEAIHMLKGMNLDGVTPDE 402
Query: 219 YTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE 278
+F++V+ AC + G+Q+H +K + S+ V L+D Y K + +V
Sbjct: 403 VSFATVINACSNIRAT-ETGKQIHCLAMKHSICSNHAVGSSLIDFYSKHGDVESCRKVLA 461
Query: 279 LIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASK 338
VD +I N ++ G ++N EA + G++ + + C+ + +S
Sbjct: 462 Q-VDASSIVPRNVLIAGLVQNNREDEAIDLFQQVLRDGLKPSSFTFSSILSGCTGLLSSI 520
Query: 339 IN 340
I
Sbjct: 521 IG 522
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 2/103 (1%)
Query: 214 IKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDA 273
++ + + ++ L AC + + G+Q H + K GL S + LV+MY +C + DA
Sbjct: 27 VRPDQFDLAATLSACSRLGALVS-GKQAHCDAEKRGLGSGAFCAAALVNMYARCGRVGDA 85
Query: 274 ERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASG 316
RVF I + W +M+ GY R G + EA M+ G
Sbjct: 86 RRVFGGI-SLPDTVCWASMISGYHRAGRFQEAVCLFTRMEKMG 127
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 46/117 (39%), Gaps = 3/117 (2%)
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
+ L AC + GKQ H K G +L+N Y + + DA VF +
Sbjct: 34 LAATLSACSRLGALVSGKQAHCDAEKRGLGSGAFCAAALVNMYARCGRVGDARRVFGGIS 93
Query: 180 RHNTVVWTAKIVNNCREGHFHQ---VFNDFKEMGRERIKKNSYTFSSVLKACGGVDD 233
+TV W + I R G F + +F ++MG + L A G ++D
Sbjct: 94 LPDTVCWASMISGYHRAGRFQEAVCLFTRMEKMGSSPDRVTCVAVVCALTALGRLED 150
>gi|347954476|gb|AEP33738.1| chlororespiratory reduction 21, partial [Matthiola incana]
Length = 784
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 87/344 (25%), Positives = 163/344 (47%), Gaps = 16/344 (4%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFL-NRLLLMHVSC 59
MD + I ++Y +++ C +++D ++ I K+ + ++ +L++ + C
Sbjct: 38 MDYRNIRIGPEIYGEILQGCVYERDLCTGQQIHAQILKKGDFYARNEYIETKLVIFYAKC 97
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AW 118
L+ A+ LF ++ +R+ SWA +I + + + F EM++ +FP +
Sbjct: 98 DALEIAQVLFSKLRVRNVFSWAAIIGVKCRIGLGEGALMGFVEMLENG------IFPDNF 151
Query: 119 IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL 178
++ V KAC G+ VHG + K G + + SL + YGK L+DA VF +
Sbjct: 152 VVPNVCKACGALQWSRFGRGVHGYVAKAGLHHCVFVASSLADMYGKCGVLDDARKVFDYI 211
Query: 179 KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC---GGVDDDG 235
N V W A +V + G + EM +E I+ T S+ L A GG+++
Sbjct: 212 PDRNAVAWNALMVGYVQNGMNEEAIRLLSEMRKEGIEPTRVTVSTCLSASANMGGIEE-- 269
Query: 236 NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
G+Q HA + GL D + +++ Y L+ AE +F+ +++K + +WN ++ G
Sbjct: 270 --GKQSHAXXIVNGLXLDNILGTSILNFYCXVGLIEYAEMIFDGMIEKXXV-TWNLLISG 326
Query: 296 YIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKI 339
Y++ GL EA LM+ ++ ++ L A +S K+
Sbjct: 327 YVQQGLVEEAIHMCQLMRRENLKFDCVTLSTLMSAATSTQNLKL 370
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 80/264 (30%), Positives = 131/264 (49%), Gaps = 9/264 (3%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+ CG LD AR++FD +P R+ +W ++VGYV +E I L +EM RK+G +
Sbjct: 194 MYGKCGVLDDARKVFDYIPDRNAVAWNALMVGYVQNGMNEEAIRLLSEM--RKEG----I 247
Query: 115 FPAWIIVCV-LKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADF 173
P + V L A +E GKQ H G + L S++NFY +E A+
Sbjct: 248 EPTRVTVSTCLSASANMGGIEEGKQSHAXXIVNGLXLDNILGTSILNFYCXVGLIEYAEM 307
Query: 174 VFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDD 233
+F + V W I ++G + + + M RE +K + T S+++ A +
Sbjct: 308 IFDGMIEKXXVTWNLLISGYVQQGLVEEAIHMCQLMRRENLKFDCVTLSTLMSAATSTQN 367
Query: 234 DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
G+++ ++ GLESD + VDMY KC + +A++VF+ V +K++ WN +L
Sbjct: 368 L-KLGKEIQCYCIRHGLESDIVLASTAVDMYAKCGSIVNAKKVFDSTV-QKDLILWNTLL 425
Query: 294 VGYIRNGLYVEATKFLYLMKASGI 317
Y +GL EA + Y M+ +
Sbjct: 426 SAYADSGLSGEALRLFYEMQLESV 449
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 62/285 (21%), Positives = 120/285 (42%), Gaps = 38/285 (13%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
+L + G ++ A +FD M + +W ++I GYV +E I + ++M+R+
Sbjct: 292 ILNFYCXVGLIEYAEMIFDGMIEKXXVTWNLLISGYVQQGLVEEAIHM-CQLMRREN--- 347
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
L F + ++ A T N++LGK++ + G +I L + ++ Y K + +A
Sbjct: 348 -LKFDCVTLSTLMSAATSTQNLKLGKEIQCYCIRHGLESDIVLASTAVDMYAKCGSIVNA 406
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
VF + + ++W + G + F EM E + N T+
Sbjct: 407 KKVFDSTVQKDLILWNTLLSAYADSGLSGEALRLFYEMQLESVPPNVITW---------- 456
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
N++ + L ++ G V+ + L + +F N+ SW
Sbjct: 457 ------------NLIILSL-----LRNGQVNEAKEMFLQMQSSGIF------PNLISWTT 493
Query: 292 MLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
M+ G ++NG EA FL M+ SG++ I AC+++++
Sbjct: 494 MMNGLVQNGCSEEAILFLRKMQESGLRPNAFTITVALSACANLAS 538
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 67/299 (22%), Positives = 118/299 (39%), Gaps = 47/299 (15%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R ++ ++ + + M+ CG + A+++FD +D W ++ Y D E +
Sbjct: 380 RHGLESDIVLASTAVDMYAKCGSIVNAKKVFDSTVQKDLILWNTLLSAYADSGLSGEALR 439
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
LF EM L P +I T N L L RN +
Sbjct: 440 LFYEMQ-------LESVPPNVI---------TWN----------LIILSLLRNGQVN--- 470
Query: 159 INFYGKFRCLEDADFVFSQLKRH----NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERI 214
+A +F Q++ N + WT + + G + ++M +
Sbjct: 471 -----------EAKEMFLQMQSSGIFPNLISWTTMMNGLVQNGCSEEAILFLRKMQESGL 519
Query: 215 KKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLES-DEYVQCGLVDMYGKCRLLRDA 273
+ N++T + L AC + + GR +H I++ S +++ LVDMY KC + A
Sbjct: 520 RPNAFTITVALSACANLASL-HFGRSIHGYIIRNQQYSFSAWIETSLVDMYAKCGDINKA 578
Query: 274 ERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
ERVF + + + +NAM+ Y G EA ++ G++ I L AC+
Sbjct: 579 ERVFGSKLCSE-LPLYNAMISAYALYGKVREAITLYRSLEDGGVKPDNITITSLLSACN 636
>gi|357512007|ref|XP_003626292.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355501307|gb|AES82510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 650
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/286 (27%), Positives = 138/286 (48%), Gaps = 10/286 (3%)
Query: 45 TLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMM 104
L N LL M+ CG+ A +FD MP+RD SW MI G++ D+ F +M
Sbjct: 76 ALFIWNSLLSMYSKCGEFRNAGNVFDYMPVRDTVSWNTMISGFLRNGDFDTSFKFFKQMT 135
Query: 105 KRKKGHMLLVFPAWIIVCVLKAC---VCTMNMELGKQVHGLLFKLGSSRNISLTGSLINF 161
+ + + F + +L C ++ + + +HGL+F G R I++ +LI
Sbjct: 136 ESNR--VCCRFDKATLTTMLSGCDGLRLGISTSVTQMIHGLVFVGGFEREITVGNALITS 193
Query: 162 YGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGR--ERIKKNSY 219
Y K C VF ++ N V WTA I + + F +M R + N
Sbjct: 194 YFKCECFSQGRKVFDEMIERNVVTWTAVISGLAQNEFYEDSLRLFAQM-RCCGSVSPNVL 252
Query: 220 TFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFEL 279
T+ S L AC G+ + G+++H + K+G++SD ++ L+D+Y KC L A ++FE
Sbjct: 253 TYLSSLMACSGLQVLRD-GQKIHGLLWKLGMQSDLCIESALMDLYSKCGSLDAAWQIFE- 310
Query: 280 IVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLIN 325
++ + S +LV + +NG EA + M A G+++ ++++
Sbjct: 311 SAEELDGVSLTVILVAFAQNGFEEEAIQIFTKMVALGMEVDANMVS 356
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 81/284 (28%), Positives = 138/284 (48%), Gaps = 8/284 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ + C R++FDEM R+ +W +I G Y++ + LFA+M R G
Sbjct: 188 NALITSYFKCECFSQGRKVFDEMIERNVVTWTAVISGLAQNEFYEDSLRLFAQM--RCCG 245
Query: 110 HMLLVFPAWII-VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
V P + + L AC + G+++HGLL+KLG ++ + +L++ Y K L
Sbjct: 246 S---VSPNVLTYLSSLMACSGLQVLRDGQKIHGLLWKLGMQSDLCIESALMDLYSKCGSL 302
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+ A +F + + V T +V + G + F +M ++ ++ S+VL
Sbjct: 303 DAAWQIFESAEELDGVSLTVILVAFAQNGFEEEAIQIFTKMVALGMEVDANMVSAVLGVF 362
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
GV G+Q+H+ I+K + +V GLV+MY KC L D+ VF + +KN S
Sbjct: 363 -GVGTYLALGKQIHSLIIKKNFCENPFVGNGLVNMYSKCGDLSDSLLVFYQMT-QKNSVS 420
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
WN+++ + R+G +A +F M+ G+ + L ACS
Sbjct: 421 WNSVIAAFARHGDGFKALQFYEEMRVEGVAPTDVTFLSLLHACS 464
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 69/268 (25%), Positives = 118/268 (44%), Gaps = 31/268 (11%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
++ ++ L + L+ ++ CG LD A Q+F+ D S V++V + +E I
Sbjct: 279 KLGMQSDLCIESALMDLYSKCGSLDAAWQIFESAEELDGVSLTVILVAFAQNGFEEEAIQ 338
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
+F +M+ + + A ++ VL + LGKQ+H L+ K N + L
Sbjct: 339 IFTKMVA-----LGMEVDANMVSAVLGVFGVGTYLALGKQIHSLIIKKNFCENPFVGNGL 393
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
+N Y K L D+ VF Q+ + N+V W + I R G + ++EM E +
Sbjct: 394 VNMYSKCGDLSDSLLVFYQMTQKNSVSWNSVIAAFARHGDGFKALQFYEEMRVEGVAPTD 453
Query: 219 YTFSSVLKACGGVDDDGNCGRQMHANIVKIGLE-------------SDEYVQCGLVDMYG 265
TF S+L AC HA +V+ G+E E+ C +VDM G
Sbjct: 454 VTFLSLLHACS------------HAGLVEKGMELLESMTNDHGISPRSEHYAC-VVDMLG 500
Query: 266 KCRLLRDAERVFELIVDKKNIASWNAML 293
+ L +A++ E + + + W A+L
Sbjct: 501 RAGHLNEAKKFIEGLPEHGGVLVWQALL 528
>gi|449524410|ref|XP_004169216.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
Length = 684
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/269 (29%), Positives = 139/269 (51%), Gaps = 10/269 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDV-ADYQECITLFAEMMKRKK 108
N LL+++ +CG L+ AR+LFDEMP RD SW I+G + V DY E + M+ R
Sbjct: 49 NTLLMLYGNCGFLNDARRLFDEMPERDVVSWNT-IIGLLSVNGDYTEARNYYFWMILRS- 106
Query: 109 GHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
++ P + ++ +L + E+ +++H K+G ++ +L++ YGK
Sbjct: 107 ----VIKPNLVSVISLLPISAALEDEEMTRRIHCYSVKVGLDSQVTTCNALVDAYGKCGS 162
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
++ VF++ N V W + I +G N F+ M + NS T SS+L
Sbjct: 163 VKALWQVFNETVEKNEVSWNSIINGLACKGRCWDALNAFRMMIDAGAQPNSVTISSILPV 222
Query: 228 CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
+ + G+++H +++G E+D ++ L+DMY K +A +F + D++NI
Sbjct: 223 LVEL-ECFKAGKEIHGFSMRMGTETDIFIANSLIDMYAKSGHSTEASTIFHNL-DRRNIV 280
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASG 316
SWNAM+ Y N L +EA +F+ M+ +G
Sbjct: 281 SWNAMIANYALNRLPLEAIRFVIQMQETG 309
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 78/300 (26%), Positives = 134/300 (44%), Gaps = 8/300 (2%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
+V + + N L+ + CG + Q+F+E ++ SW +I G + +
Sbjct: 140 KVGLDSQVTTCNALVDAYGKCGSVKALWQVFNETVEKNEVSWNSIINGLACKGRCWDALN 199
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
F M+ + + + V V C + GK++HG ++G+ +I + SL
Sbjct: 200 AFRMMIDAGAQPNSVTISSILPVLVELEC-----FKAGKEIHGFSMRMGTETDIFIANSL 254
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
I+ Y K +A +F L R N V W A I N + +M N+
Sbjct: 255 IDMYAKSGHSTEASTIFHNLDRRNIVSWNAMIANYALNRLPLEAIRFVIQMQETGECPNA 314
Query: 219 YTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE 278
TF++VL AC + G G+++HA V+IGL SD +V L+DMY KC L A VF
Sbjct: 315 VTFTNVLPACARLGFLGP-GKEIHAMGVRIGLTSDLFVSNSLIDMYAKCGCLHSARNVFN 373
Query: 279 LIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASK 338
+K+ S+N +++GY +++ M+ G + + AC++++A K
Sbjct: 374 --TSRKDEVSYNILIIGYSETDDCLQSLNLFSEMRLLGKKPDVVSFVGVISACANLAALK 431
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 74/280 (26%), Positives = 122/280 (43%), Gaps = 8/280 (2%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R+ + + N L+ M+ G A +F + R+ SW MI Y E I
Sbjct: 241 RMGTETDIFIANSLIDMYAKSGHSTEASTIFHNLDRRNIVSWNAMIANYALNRLPLEAIR 300
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
+M + + + F VL AC + GK++H + ++G + ++ ++ SL
Sbjct: 301 FVIQMQETGECPNAVTFTN-----VLPACARLGFLGPGKEIHAMGVRIGLTSDLFVSNSL 355
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
I+ Y K CL A VF+ R + V + I+ Q N F EM K +
Sbjct: 356 IDMYAKCGCLHSARNVFNT-SRKDEVSYNILIIGYSETDDCLQSLNLFSEMRLLGKKPDV 414
Query: 219 YTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE 278
+F V+ AC + G+++H ++ L S +V L+D Y KC + A R+F
Sbjct: 415 VSFVGVISACANLAALKQ-GKEVHGVALRNHLYSHLFVSNSLLDFYTKCGRIDIACRLFN 473
Query: 279 LIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
I+ K++ASWN M++GY G A M+ +Q
Sbjct: 474 QIL-FKDVASWNTMILGYGMIGELETAISMFEAMRDDTVQ 512
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 125/257 (48%), Gaps = 11/257 (4%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R+ + L N L+ M+ CG L +AR +F+ +D S+ ++I+GY + D + +
Sbjct: 342 RIGLTSDLFVSNSLIDMYAKCGCLHSARNVFN-TSRKDEVSYNILIIGYSETDDCLQSLN 400
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
LF+EM K ++ F V V+ AC ++ GK+VHG+ + ++ ++ SL
Sbjct: 401 LFSEMRLLGKKPDVVSF-----VGVISACANLAALKQGKEVHGVALRNHLYSHLFVSNSL 455
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
++FY K ++ A +F+Q+ + W I+ G + F+ M + ++ +
Sbjct: 456 LDFYTKCGRIDIACRLFNQILFKDVASWNTMILGYGMIGELETAISMFEAMRDDTVQYDL 515
Query: 219 YTFSSVLKAC--GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERV 276
++ +VL AC GG+ + G Q + ++ LE E +VD+ G+ + +A ++
Sbjct: 516 VSYIAVLSACSHGGLVER---GWQYFSEMLAQRLEPTEMHYTCMVDLLGRAGFVEEAAKL 572
Query: 277 FELIVDKKNIASWNAML 293
+ + + W A+L
Sbjct: 573 IQQLPIAPDANIWGALL 589
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 100/206 (48%), Gaps = 3/206 (1%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
VLK C + ++ G +VHG++FKLG ++ + +L+ YG L DA +F ++ +
Sbjct: 16 VLKLCSDSFDICKGMEVHGVVFKLGFDTDVYVGNTLLMLYGNCGFLNDARRLFDEMPERD 75
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEM-GRERIKKNSYTFSSVLKACGGVDDDGNCGRQM 241
V W I G + + N + M R IK N + S+L ++D+ R++
Sbjct: 76 VVSWNTIIGLLSVNGDYTEARNYYFWMILRSVIKPNLVSVISLLPISAALEDE-EMTRRI 134
Query: 242 HANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGL 301
H VK+GL+S LVD YGKC ++ +VF V+K + SWN+++ G G
Sbjct: 135 HCYSVKVGLDSQVTTCNALVDAYGKCGSVKALWQVFNETVEKNEV-SWNSIINGLACKGR 193
Query: 302 YVEATKFLYLMKASGIQIQESLINDL 327
+A +M +G Q I+ +
Sbjct: 194 CWDALNAFRMMIDAGAQPNSVTISSI 219
>gi|410110045|gb|AFV61102.1| pentatricopeptide repeat-containing protein 81, partial [Nashia
inaguensis]
Length = 405
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/290 (27%), Positives = 137/290 (47%), Gaps = 12/290 (4%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMP-LRDFNSWAVMIVGYVDVADYQEC-ITLFAEMMKR 106
LN + CG ++ A+++FD RD +W M+ Y++ + +EC +F EM+++
Sbjct: 97 LNATXTAYAECGCIEDAKRVFDSSDGYRDLVTWNSMLAAYLE-HNLKECGFNIFLEMVRQ 155
Query: 107 KKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF- 165
+ L A+ + V+ AC LG +H + K G ++ +L++ Y K
Sbjct: 156 R-----LEMDAYTLSSVISACFEDTQQSLGXSLHXXVIKKGLDZXTQISNALVSMYLKSN 210
Query: 166 -RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
R +EDA +F + + V W + + G F+ + + + + YTF++V
Sbjct: 211 SRNVEDAXXIFEHINXKDLVSWNTILTGLSQNGLSENALRLFQNIHLDHLVTDQYTFAAV 270
Query: 225 LKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
L++C + GRQ+H +VK G E +EYV L+ MY KC ++ DA FE K+
Sbjct: 271 LRSCSDLAT-LQLGRQIHVLVVKSGFEGNEYVASALIFMYSKCGIIEDAWESFE-SSXKE 328
Query: 285 NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
+WN+++ Y ++G A YLM I++ ACS I
Sbjct: 329 TSVTWNSIIFAYAQHGQGKIALDLFYLMTERXIKLDHVTFVAALTACSHI 378
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 76/259 (29%), Positives = 127/259 (49%), Gaps = 12/259 (4%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEM-MKRKKGHMLL 113
M+ C +++ A ++F M R+ SW +I GY ++ B + C+TLF M M+ +
Sbjct: 2 MYAKCRRVEDANKVFKYMRERNAVSWNALIGGYAEMGBLERCVTLFVGMEMEGVRXDDAT 61
Query: 114 VFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADF 173
P ++ + A + +L +Q+HG + K G ++ + Y + C+EDA
Sbjct: 62 FAP--LLTLLXDAEL----YDLXRQLHGKIMKRGLEYENTVLNATXTAYAECGCIEDAKR 115
Query: 174 VF-SQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVD 232
VF S + V W + + FN F EM R+R++ ++YT SSV+ AC D
Sbjct: 116 VFDSSDGYRDLVTWNSMLAAYLEHNLKECGFNIFLEMVRQRLEMDAYTLSSVISACFE-D 174
Query: 233 DDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGK--CRLLRDAERVFELIVDKKNIASWN 290
+ G +H ++K GL+ + LV MY K R + DA +FE I + K++ SWN
Sbjct: 175 TQQSLGXSLHXXVIKKGLDZXTQISNALVSMYLKSNSRNVEDAXXIFEHI-NXKDLVSWN 233
Query: 291 AMLVGYIRNGLYVEATKFL 309
+L G +NGL A +
Sbjct: 234 TILTGLSQNGLSENALRLF 252
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 69/142 (48%), Gaps = 1/142 (0%)
Query: 160 NFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSY 219
+ Y K R +EDA+ VF ++ N V W A I G + F M E ++ +
Sbjct: 1 DMYAKCRRVEDANKVFKYMRERNAVSWNALIGGYAEMGBLERCVTLFVGMEMEGVRXDDA 60
Query: 220 TFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFEL 279
TF+ +L + + RQ+H I+K GLE + V Y +C + DA+RVF+
Sbjct: 61 TFAPLLTLLXDAEL-YDLXRQLHGKIMKRGLEYENTVLNATXTAYAECGCIEDAKRVFDS 119
Query: 280 IVDKKNIASWNAMLVGYIRNGL 301
+++ +WN+ML Y+ + L
Sbjct: 120 SDGYRDLVTWNSMLAAYLEHNL 141
>gi|410110003|gb|AFV61081.1| pentatricopeptide repeat-containing protein 81, partial [Lippia
alba]
Length = 358
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 74/267 (27%), Positives = 131/267 (49%), Gaps = 10/267 (3%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMP-LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRK 107
LN ++ + CG ++ A+++FD RD +W M+ Y+ + +F EM++R+
Sbjct: 97 LNAMITAYAECGCIEDAKRVFDSSDGYRDLVTWNSMLAAYLGHNLEEYGFNIFLEMVRRR 156
Query: 108 KGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF-- 165
L A+ + ++ AC LGK +HG + K G + ++ +L++ Y K
Sbjct: 157 -----LEMDAYTLSSIISACFEDTQQSLGKSLHGFVIKKGLDQVTQISNALVSMYLKSNS 211
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
R +EDA +F + + V W + + G F+ + + + + YTF++VL
Sbjct: 212 RNVEDALKIFEHINVKDLVSWNTILTGLSQNGLSENALRLFQNIHLDHLVTDQYTFAAVL 271
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
++C + GRQ+H +VK G E +EYV L+ MY KC ++ DA FE K+
Sbjct: 272 RSCSDLAT-LQLGRQIHVLVVKSGFEGNEYVASALIFMYSKCGIIEDAWESFE-SSHKET 329
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLM 312
+WN+++ Y ++G A YLM
Sbjct: 330 SVTWNSIIFAYAQHGQGKIALDLFYLM 356
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 76/259 (29%), Positives = 127/259 (49%), Gaps = 12/259 (4%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEM-MKRKKGHMLL 113
M+ C ++ A ++F M R+ SW +I GY ++ + + C TLF M M+ +
Sbjct: 2 MYAKCRRVXDANKVFKYMGERNAVSWNALIGGYAEMGNLERCXTLFVGMEMEGVRVDDAT 61
Query: 114 VFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADF 173
P ++C + +L +Q+HG + K G ++ ++I Y + C+EDA
Sbjct: 62 FAPLLTLLCDAEL------YDLTRQLHGKIMKRGLEYENTVLNAMITAYAECGCIEDAKR 115
Query: 174 VF-SQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVD 232
VF S + V W + + FN F EM R R++ ++YT SS++ AC D
Sbjct: 116 VFDSSDGYRDLVTWNSMLAAYLGHNLEEYGFNIFLEMVRRRLEMDAYTLSSIISACFE-D 174
Query: 233 DDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGK--CRLLRDAERVFELIVDKKNIASWN 290
+ G+ +H ++K GL+ + LV MY K R + DA ++FE I + K++ SWN
Sbjct: 175 TQQSLGKSLHGFVIKKGLDQVTQISNALVSMYLKSNSRNVEDALKIFEHI-NVKDLVSWN 233
Query: 291 AMLVGYIRNGLYVEATKFL 309
+L G +NGL A +
Sbjct: 234 TILTGLSQNGLSENALRLF 252
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 70/143 (48%), Gaps = 3/143 (2%)
Query: 160 NFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSY 219
+ Y K R + DA+ VF + N V W A I G+ + F M E ++ +
Sbjct: 1 DMYAKCRRVXDANKVFKYMGERNAVSWNALIGGYAEMGNLERCXTLFVGMEMEGVRVDDA 60
Query: 220 TFSSVLKA-CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE 278
TF+ +L C D RQ+H I+K GLE + V ++ Y +C + DA+RVF+
Sbjct: 61 TFAPLLTLLCDAELYD--LTRQLHGKIMKRGLEYENTVLNAMITAYAECGCIEDAKRVFD 118
Query: 279 LIVDKKNIASWNAMLVGYIRNGL 301
+++ +WN+ML Y+ + L
Sbjct: 119 SSDGYRDLVTWNSMLAAYLGHNL 141
>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Vitis vinifera]
Length = 686
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 87/291 (29%), Positives = 137/291 (47%), Gaps = 11/291 (3%)
Query: 48 FLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRK 107
LN +L + R LF ++ + W MI G V + + I + M R
Sbjct: 48 LLNMILRCSFDFSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLM--RS 105
Query: 108 KGHML--LVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
+G + FP VLKAC ++++LG ++H L+ K G ++ + SL+ Y K
Sbjct: 106 EGFLPNNFTFPF-----VLKACARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKC 160
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
LEDA VF + N V WTA I G F + + F+ + + +S+T VL
Sbjct: 161 GYLEDAHKVFDDIPDKNVVSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVL 220
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
AC + D N G +H I+++G+ + +V LVDMY KC + A VF+ + +K+
Sbjct: 221 SACTQLGDL-NSGEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGM-PEKD 278
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
I SW AM+ GY NGL EA M+ ++ + + AC+ + A
Sbjct: 279 IVSWGAMIQGYALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSACARLGA 329
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 117/246 (47%), Gaps = 13/246 (5%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ CG ++ AR +FD MP +D SW MI GY +E I LF +M +
Sbjct: 254 LVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQREN---- 309
Query: 112 LLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
V P + +V VL AC +ELG+ V GL+ + N L +LI+ Y K +
Sbjct: 310 --VKPDCYTVVGVLSACARLGALELGEWVSGLVDRNEFLYNPVLGTALIDLYAKCGSMSR 367
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC-- 228
A VF +K + VVW A I G+ F F ++ + IK + TF +L C
Sbjct: 368 AWEVFKGMKEKDRVVWNAIISGLAMNGYVKISFGLFGQVEKLGIKPDGNTFIGLLCGCTH 427
Query: 229 GGVDDDGNCGRQMHANIVKIGL-ESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
G+ D+G R ++ L S E+ C +VD+ G+ LL +A ++ + + N
Sbjct: 428 AGLVDEGR--RYFNSMYRFFSLTPSIEHYGC-MVDLLGRAGLLDEAHQLIRNMPMEANAI 484
Query: 288 SWNAML 293
W A+L
Sbjct: 485 VWGALL 490
>gi|110736949|dbj|BAF00431.1| hypothetical protein [Arabidopsis thaliana]
Length = 659
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 92/339 (27%), Positives = 166/339 (48%), Gaps = 13/339 (3%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNR-LLLMHVSC 59
M L L T + C IK C+ D + H + V + +F++ L++M+ +C
Sbjct: 67 MRKLSLYPTRSSFPCAIKACSSLFDIFSGKQ--THQQAFVFGYQSDIFVSSALIVMYSTC 124
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVF-PAW 118
G+L+ AR++FDE+P RD SW MI GY + + ++LF +++ + +F +
Sbjct: 125 GKLEDARKVFDEIPKRDIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSM 184
Query: 119 IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF--RCLEDADFVFS 176
+V V+ AC L + +H + K G R +S+ +L++ Y K + A +F
Sbjct: 185 GLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFD 244
Query: 177 QLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKK-NSYTFSSVLKACGGVDDDG 235
Q+ + V + + + + G ++ F F+ + + ++ N+ T S+VL A V G
Sbjct: 245 QIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLA---VSHSG 301
Query: 236 --NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
G+ +H ++++GLE D V ++DMY KC + A + F+ + KN+ SW AM+
Sbjct: 302 ALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRM-KNKNVRSWTAMI 360
Query: 294 VGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
GY +G +A + M SG++ + ACS
Sbjct: 361 AGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACS 399
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 108/237 (45%), Gaps = 6/237 (2%)
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI 119
G + AR++FD++ +D S+ ++ Y E +F ++K K ++ F A
Sbjct: 234 GGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNK----VVTFNAIT 289
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
+ VL A + + +GK +H + ++G ++ + S+I+ Y K +E A F ++K
Sbjct: 290 LSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMK 349
Query: 180 RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGR 239
N WTA I GH + F M ++ N TF SVL AC R
Sbjct: 350 NKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWR 409
Query: 240 QMHANIVKIGLESD-EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
+A + G+E E+ C +VD+ G+ L+ A + + + K + W+++L
Sbjct: 410 WFNAMKGRFGVEPGLEHYGC-MVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAA 465
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 59/124 (47%), Gaps = 2/124 (1%)
Query: 186 WTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANI 245
W + I + R G + F M + + +F +KAC + D + G+Q H
Sbjct: 44 WNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIFS-GKQTHQQA 102
Query: 246 VKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEA 305
G +SD +V L+ MY C L DA +VF+ I K++I SW +M+ GY NG ++A
Sbjct: 103 FVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEI-PKRDIVSWTSMIRGYDLNGNALDA 161
Query: 306 TKFL 309
Sbjct: 162 VSLF 165
>gi|293331543|ref|NP_001169748.1| uncharacterized protein LOC100383629 [Zea mays]
gi|224031397|gb|ACN34774.1| unknown [Zea mays]
Length = 546
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 84/275 (30%), Positives = 127/275 (46%), Gaps = 13/275 (4%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+ CG A ++FDEM LRD SW ++ D + L M+ G
Sbjct: 1 MYGRCGCRGDAVRVFDEMALRDSVSWNSLLSASASATD---ALALLRRMLSAAPGAAACD 57
Query: 115 FPAWIIVCVLKACV----CTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
+ VL AC T + L VHGL G +S+ +LI Y +
Sbjct: 58 HA--TLTTVLSACARAGGGTGSASL-PAVHGLAASCGLDAEVSVGNALITAYFECSSPGS 114
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
A+ VF + N + WTA + R + + + F++M R + N ++SS L AC G
Sbjct: 115 AERVFDGMADRNVITWTAMVSGMARAERYSESLSLFRQM-RRAVDANRASYSSSLLACAG 173
Query: 231 VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWN 290
G+Q+H VK GLE+D +V+ L+DMY KC L+ DA RVF D + S
Sbjct: 174 -SRAAREGQQIHGLAVKAGLETDLHVESELMDMYSKCGLMEDALRVFRSGQDPDEV-SLT 231
Query: 291 AMLVGYIRNGLYVEATKFLYLMKASGIQIQESLIN 325
+L G+ +NGL EA + M GI++ ++++
Sbjct: 232 VILAGFAQNGLEEEAFRLFAEMVGKGIRVDANMVS 266
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 78/289 (26%), Positives = 133/289 (46%), Gaps = 8/289 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ + C +A ++FD M R+ +W M+ G Y E ++LF +M +
Sbjct: 100 NALITAYFECSSPGSAERVFDGMADRNVITWTAMVSGMARAERYSESLSLFRQMRRAVDA 159
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ + L AC + G+Q+HGL K G ++ + L++ Y K +E
Sbjct: 160 NRASYSSS------LLACAGSRAAREGQQIHGLAVKAGLETDLHVESELMDMYSKCGLME 213
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
DA VF + + V T + + G + F F EM + I+ ++ S+VL A
Sbjct: 214 DALRVFRSGQDPDEVSLTVILAGFAQNGLEEEAFRLFAEMVGKGIRVDANMVSAVLGAF- 272
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
G G+Q+HA +K + YV GL++MY KC L+++ RVF+ KN +W
Sbjct: 273 GASAPFALGKQIHALAIKRCFGGNTYVCNGLINMYSKCGELQESIRVFD-GTPSKNTVTW 331
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASK 338
N+++ Y R+G E M+A G++ + L CS + + +
Sbjct: 332 NSIIAAYARHGHGWEVFGLFESMEADGVKPTDVTFLSLLHGCSHVGSPR 380
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 112/256 (43%), Gaps = 7/256 (2%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
+ ++ L + L+ M+ CG ++ A ++F D S V++ G+ +E
Sbjct: 189 KAGLETDLHVESELMDMYSKCGLMEDALRVFRSGQDPDEVSLTVILAGFAQNGLEEEAFR 248
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
LFAEM+ + + A ++ VL A + LGKQ+H L K N + L
Sbjct: 249 LFAEMVGKG-----IRVDANMVSAVLGAFGASAPFALGKQIHALAIKRCFGGNTYVCNGL 303
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
IN Y K L+++ VF NTV W + I R GH +VF F+ M + +K
Sbjct: 304 INMYSKCGELQESIRVFDGTPSKNTVTWNSIIAAYARHGHGWEVFGLFESMEADGVKPTD 363
Query: 219 YTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESD-EYVQCGLVDMYGKCRLLRDAERVF 277
TF S+L C V + + K G+ E+ C +VDM G+ L DA+
Sbjct: 364 VTFLSLLHGCSHVGSPRKGLEILDSMPSKYGIHPKVEHYAC-VVDMLGRASQLDDAKAFI 422
Query: 278 ELIVDKKNIASWNAML 293
E K + W +++
Sbjct: 423 EDGPFKDSALLWQSLM 438
>gi|449461217|ref|XP_004148338.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Cucumis sativus]
Length = 619
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 85/293 (29%), Positives = 136/293 (46%), Gaps = 11/293 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR--K 107
+ L+ M+ CG++ AR++FDE+ +D SW MI GY + E + LF EMM+ +
Sbjct: 166 HSLITMYARCGKMGDARKVFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQ 225
Query: 108 KGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
M LV VL AC +++LG V + + + N + +LI+ YGK
Sbjct: 226 PNEMSLV-------SVLGACGELGDLKLGTWVEEFVVENKMTLNYFMGSALIHMYGKCGD 278
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
L A +F +K+ + V W A I + G + F++M + T +L A
Sbjct: 279 LVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSA 338
Query: 228 CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
C + + G+Q+ + G + D YV LVDMY KC L +A RVF + + KN
Sbjct: 339 CASIGAL-DLGKQVEIYASERGFQDDVYVGTALVDMYAKCGSLDNAFRVFYGMPN-KNEV 396
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKIN 340
SWNAM+ +G EA M G + + I + + + + A ++
Sbjct: 397 SWNAMISALAFHGQAQEALALFKSMMNEGGTVSPNDITFVGVLSACVHAGLVD 449
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 72/274 (26%), Positives = 123/274 (44%), Gaps = 13/274 (4%)
Query: 74 LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLK-------- 125
L+DF +V +D +Y + + K + L F + + LK
Sbjct: 73 LKDFAYASVFFSNILDPTEYSFNVMIRGLSTAWNKSSLALEFYSRMKFLGLKPNNLTYPF 132
Query: 126 ---ACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
AC + +E G+ H + + G + ++ SLI Y + + DA VF ++ + +
Sbjct: 133 LFIACSNLLAVENGRMGHCSVIRRGLDEDGHVSHSLITMYARCGKMGDARKVFDEISQKD 192
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
V W + I + H + F+EM + N + SVL ACG + D G +
Sbjct: 193 LVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDL-KLGTWVE 251
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
+V+ + + ++ L+ MYGKC L A R+F+ + KK+ +WNAM+ GY +NG+
Sbjct: 252 EFVVENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSM-KKKDKVTWNAMITGYAQNGMS 310
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
EA K M+ S + + + AC+SI A
Sbjct: 311 EEAIKLFQDMRMSSTAPDQITLIGILSACASIGA 344
>gi|7413540|emb|CAB86020.1| putative protein [Arabidopsis thaliana]
gi|9758453|dbj|BAB08982.1| selenium-binding protein-like [Arabidopsis thaliana]
Length = 864
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 83/293 (28%), Positives = 142/293 (48%), Gaps = 7/293 (2%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R++++ + LN L+ + CG ++ ARQ+FD M R SW MI Y E +
Sbjct: 81 RIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALD 140
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
+F EM R +G F + I VL AC + K++H L K N+ + +L
Sbjct: 141 IFLEM--RNEG---FKFSEFTISSVLSACGVNCDALECKKLHCLSVKTCIDLNLYVGTAL 195
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
++ Y K ++DA VF ++ ++V W++ + + ++ + ++ R +++N
Sbjct: 196 LDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQ 255
Query: 219 YTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE 278
+T SSV+ AC + G+QMHA I K G S+ +V VDMY KC LR++ +F
Sbjct: 256 FTLSSVICACSNLAALIE-GKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFS 314
Query: 279 LIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
V +KN+ WN ++ G+ ++ E M+ G+ E + L C
Sbjct: 315 E-VQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVC 366
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 116/246 (47%), Gaps = 9/246 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL ++ CG + A Q+F+ M + +W+ M+ GYV +Y+E + L+ R+ M
Sbjct: 195 LLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALLLY-----RRAQRM 249
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
L + + V+ AC + GKQ+H ++ K G N+ + S ++ Y K L ++
Sbjct: 250 SLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRES 309
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG-- 229
+FS+++ N +W I + +V F++M ++ + N TFSS+L CG
Sbjct: 310 YIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHT 369
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
G+ ++G R GL + +VD+ G+ LL +A + + I + W
Sbjct: 370 GLVEEGR--RFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFDPTASIW 427
Query: 290 NAMLVG 295
++L
Sbjct: 428 GSLLAS 433
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 110/214 (51%), Gaps = 2/214 (0%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
+L+ C + K HG + ++ +++L LIN Y K +E A VF + +
Sbjct: 59 ILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERS 118
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
V W I R + + F EM E K + +T SSVL ACG D C +++H
Sbjct: 119 LVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALEC-KKLH 177
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
VK ++ + YV L+D+Y KC +++DA +VFE + DK ++ +W++M+ GY++N Y
Sbjct: 178 CLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSV-TWSSMVAGYVQNKNY 236
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
EA + ++ + ++ + ACS+++A
Sbjct: 237 EEALLLYRRAQRMSLEQNQFTLSSVICACSNLAA 270
>gi|413932901|gb|AFW67452.1| hypothetical protein ZEAMMB73_642603 [Zea mays]
Length = 853
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/298 (26%), Positives = 147/298 (49%), Gaps = 11/298 (3%)
Query: 36 IRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQE 95
+R VN+ + ++ L+ ++ C + A+ L+D D + MI GYV +E
Sbjct: 370 VRNCVNMD--VFLVSALVDIYFKCRDVRMAQNLYDAARAIDVVIGSTMISGYVLNGMSEE 427
Query: 96 CITLFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISL 154
+ +F ++++ + P A I VL C + LG+Q+HG + + R +
Sbjct: 428 ALQMFRYLLEQ------CIKPNAVTIASVLPGCASMAALPLGQQIHGYVLRNAYERKCYV 481
Query: 155 TGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERI 214
+L++ Y K L+ + ++F ++ + + V W + I + + G + + F++M E I
Sbjct: 482 ESALMDMYAKCGRLDLSHYIFLKMSQKDEVTWNSMISSFSQNGKPQEALDLFRQMCMEGI 541
Query: 215 KKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAE 274
K N+ T S+ L AC + G+++H +K +++D + + L+DMY KC L A
Sbjct: 542 KYNNITISAALSACASLPAI-YYGKEIHGVTIKGPIKADIFAESALIDMYAKCGNLELAL 600
Query: 275 RVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
RVFE + DK + SWN+++ Y +GL E+ L+ M+ G + L AC+
Sbjct: 601 RVFEFMPDKNEV-SWNSIISAYGAHGLVKESVSLLHGMQEEGYKPDHVTFLALISACA 657
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 81/287 (28%), Positives = 136/287 (47%), Gaps = 11/287 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ G L AR FD +P RD W VM+ G + D + LF M R G
Sbjct: 182 LVKMYADAGLLGNARDAFDGIPERDCVLWNVMMDGCIKAGDVDGAVRLFRNM--RASG-- 237
Query: 112 LLVFPAW-IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
P + + C L C ++ G Q+H L K G +++ +L+ Y K +CL+D
Sbjct: 238 --CEPNFATLACFLSVCATDADLLSGAQLHSLAVKCGLEPEVAVANTLLAMYAKCQCLDD 295
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
A +F + + + V W I + G F + F F +M R + +S T S+L A
Sbjct: 296 AWRLFELMPQDDLVTWNGMISGCVQNGLFVEAFGLFYDMQRSGARPDSITLVSLLPAL-- 353
Query: 231 VDDDG-NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
D +G G+++H IV+ + D ++ LVD+Y KCR +R A+ +++ ++
Sbjct: 354 TDLNGLKQGKEVHGYIVRNCVNMDVFLVSALVDIYFKCRDVRMAQNLYD-AARAIDVVIG 412
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+ M+ GY+ NG+ EA + + I+ I + C+S++A
Sbjct: 413 STMISGYVLNGMSEEALQMFRYLLEQCIKPNAVTIASVLPGCASMAA 459
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 85/324 (26%), Positives = 149/324 (45%), Gaps = 10/324 (3%)
Query: 14 TCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMP 73
C + C D +L + + + ++P + N LL M+ C LD A +LF+ MP
Sbjct: 246 ACFLSVCATDADLLSGAQL-HSLAVKCGLEPEVAVANTLLAMYAKCQCLDDAWRLFELMP 304
Query: 74 LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN- 132
D +W MI G V + E LF +M + P I + L + +N
Sbjct: 305 QDDLVTWNGMISGCVQNGLFVEAFGLFYDMQRSG------ARPDSITLVSLLPALTDLNG 358
Query: 133 MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192
++ GK+VHG + + + ++ L +L++ Y K R + A ++ + + V+ + I
Sbjct: 359 LKQGKEVHGYIVRNCVNMDVFLVSALVDIYFKCRDVRMAQNLYDAARAIDVVIGSTMISG 418
Query: 193 NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLES 252
G + F+ + + IK N+ T +SVL C + G+Q+H +++ E
Sbjct: 419 YVLNGMSEEALQMFRYLLEQCIKPNAVTIASVLPGCASMAAL-PLGQQIHGYVLRNAYER 477
Query: 253 DEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLM 312
YV+ L+DMY KC L + +F L + +K+ +WN+M+ + +NG EA M
Sbjct: 478 KCYVESALMDMYAKCGRLDLSHYIF-LKMSQKDEVTWNSMISSFSQNGKPQEALDLFRQM 536
Query: 313 KASGIQIQESLINDLRIACSSISA 336
GI+ I+ AC+S+ A
Sbjct: 537 CMEGIKYNNITISAALSACASLPA 560
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 80/297 (26%), Positives = 131/297 (44%), Gaps = 10/297 (3%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNS---WAVMIVGYVDVADYQECITLFAE 102
L RLL M+V + A +F +P S W +I G+ + + + +
Sbjct: 70 LALHTRLLGMYVLARRFRDAVAVFSALPRAAAASSLPWNWLIRGFTAAGQHHLAVLFYVK 129
Query: 103 MMKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINF 161
M H P A + V+K+C M LG+ VH +G + ++ + +L+
Sbjct: 130 MWS----HPAAPSPDAHTLPYVVKSCAALGAMSLGRLVHRTARAIGLANDVYVGSALVKM 185
Query: 162 YGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTF 221
Y L +A F + + V+W + + G F+ M + N T
Sbjct: 186 YADAGLLGNARDAFDGIPERDCVLWNVMMDGCIKAGDVDGAVRLFRNMRASGCEPNFATL 245
Query: 222 SSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIV 281
+ L C D D G Q+H+ VK GLE + V L+ MY KC+ L DA R+FEL+
Sbjct: 246 ACFLSVC-ATDADLLSGAQLHSLAVKCGLEPEVAVANTLLAMYAKCQCLDDAWRLFELM- 303
Query: 282 DKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASK 338
+ ++ +WN M+ G ++NGL+VEA Y M+ SG + + L A + ++ K
Sbjct: 304 PQDDLVTWNGMISGCVQNGLFVEAFGLFYDMQRSGARPDSITLVSLLPALTDLNGLK 360
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 92/207 (44%), Gaps = 10/207 (4%)
Query: 120 IVCVLKACVCTMNMELGKQVHGLLF---KLGSSRNISLTGSLINFYGKFRCLEDADFVFS 176
++ VL+ CV ++ LG Q+H L +++L L+ Y R DA VFS
Sbjct: 35 LLAVLRGCVSAPHLPLGLQIHARAVVSGALSDHNHLALHTRLLGMYVLARRFRDAVAVFS 94
Query: 177 QLKR---HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERI--KKNSYTFSSVLKACGGV 231
L R +++ W I G H + +M +++T V+K+C +
Sbjct: 95 ALPRAAAASSLPWNWLIRGFTAAGQHHLAVLFYVKMWSHPAAPSPDAHTLPYVVKSCAAL 154
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
+ GR +H IGL +D YV LV MY LL +A F+ I ++ + WN
Sbjct: 155 -GAMSLGRLVHRTARAIGLANDVYVGSALVKMYADAGLLGNARDAFDGIPERDCVL-WNV 212
Query: 292 MLVGYIRNGLYVEATKFLYLMKASGIQ 318
M+ G I+ G A + M+ASG +
Sbjct: 213 MMDGCIKAGDVDGAVRLFRNMRASGCE 239
>gi|302814822|ref|XP_002989094.1| hypothetical protein SELMODRAFT_129209 [Selaginella moellendorffii]
gi|300143195|gb|EFJ09888.1| hypothetical protein SELMODRAFT_129209 [Selaginella moellendorffii]
Length = 972
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/285 (27%), Positives = 137/285 (48%), Gaps = 15/285 (5%)
Query: 36 IRKRVNIKPTLLFLNRLLL-MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQ 94
+R + T +F+ L++ + CG LD AR F+ + L++ +W M+ D ++Q
Sbjct: 68 LRGSPGLLETNVFIGNLIVGAYRKCGSLDEARAAFESLKLKNVITWNAMLATLADHGEFQ 127
Query: 95 ECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISL 154
+ F+ M+ ++ F + VL AC + G +VH L +LG ++ +
Sbjct: 128 ATLHAFSRMLHEGTVPSVVTF-----ISVLGACAAWSS---GNRVHSLATELGFHTDLVV 179
Query: 155 TGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERI 214
L+NFYGK L A VF+ ++ +T WT+ N GHF + F+ M + +
Sbjct: 180 GNVLVNFYGKCGDLPQAKIVFAGIRNKSTASWTSMAAANAENGHFSGALHLFRGMLLDGL 239
Query: 215 KKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGL-ESDEYVQCGLVDMYGKCRLLRDA 273
+ N +F ++L AC + + ++H + + GL SD + LV YGK + A
Sbjct: 240 RHNIPSFLTMLHACCSLRE----ADEIHRQVCESGLVSSDVSIGNALVKTYGKLGEVERA 295
Query: 274 ERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
VFE + ++++SWNA++ Y +NG EA F M G+
Sbjct: 296 MEVFETMA-VRDLSSWNAVVASYAQNGCSEEAIAFFCRMLLEGVS 339
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 62/271 (22%), Positives = 124/271 (45%), Gaps = 20/271 (7%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ + G+++ A ++F+ M +RD +SW ++ Y +E I F M+
Sbjct: 280 NALVKTYGKLGEVERAMEVFETMAVRDLSSWNAVVASYAQNGCSEEAIAFFCRMLLEGVS 339
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
F ++ +CVC + V G + + G + +++ +LI FY + R +E
Sbjct: 340 PNGNSFAGGVL-----SCVC--GEKFSSLVRGCVEEGGFDADAAVSNALITFYSRSREVE 392
Query: 170 DADFVFSQLKRHNTVVW----TAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
A VF +L R N + W +A + N+C + F++M + + +T +S+L
Sbjct: 393 KASEVFQRLDRPNLLSWNSIISACVQNDCAD----SAVLLFRKMQLQGFAADKFTLTSLL 448
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
AC + ++ + K+ L+ D + +++M+ KC A +F+ + + N
Sbjct: 449 DACRCLSLGTKILEWINTEL-KLQLQHDSLLGIAMLNMFAKCGCPARAGEIFDDTITRTN 507
Query: 286 ----IASWNAMLVGYIRNGLYVEATKFLYLM 312
+ WN ++ Y+ NG + EA + +M
Sbjct: 508 SSCDVVLWNELIRSYVDNGCFYEAMQSFRMM 538
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 111/248 (44%), Gaps = 18/248 (7%)
Query: 79 SWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI-IVCVLKACVCTMNMELGK 137
+W +I G VD ++E + M R +G V P + +L AC +N + GK
Sbjct: 613 AWTSIITGLVDKGLHEEALKFLPVM--RVEG----VRPDGVAFAAMLGACAGALNSDQGK 666
Query: 138 QVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN---------TVVWTA 188
++H + + G + ++ SL+ Y + L A + + +++ + V W
Sbjct: 667 KIHSQVLESGLESDSAVASSLVAMYARCGNLVTAYKMLTSIEQEHRLEDHPKVLVVSWNN 726
Query: 189 KIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKI 248
I + G F+ M E I N +F +VL AC ++ G +H+ +
Sbjct: 727 FIGACIQHGQHATAVTMFRRMLLEGIAPNKVSFITVLAACR-MESTSRLGHLVHSACEEC 785
Query: 249 GLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKF 308
GL D +V+ L DMYGK L A ++ V K++ SWN+++ + ++G E F
Sbjct: 786 GLFEDAFVKTSLGDMYGKLGNLATARQILR-AVPVKSLVSWNSLVSAFAQHGRGEETVVF 844
Query: 309 LYLMKASG 316
L+ M+ G
Sbjct: 845 LWEMQQDG 852
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 71/303 (23%), Positives = 124/303 (40%), Gaps = 23/303 (7%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNS-----WAVMIVGYVDVADYQECITLFAEMMKR 106
+L M CG A ++FD+ R +S W +I YVD + E + F M+
Sbjct: 482 MLNMFAKCGCPARAGEIFDDTITRTNSSCDVVLWNELIRSYVDNGCFYEAMQSFRMMLLE 541
Query: 107 KKGHMLLVFPAWIIVC-VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
P + + VL AC + V L+ + G + ++ +L++ +
Sbjct: 542 AAAS-----PNSVTLSRVLAAC---EDEPCRAMVESLVMESGWGSDAQVSNALVSMLARS 593
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
+E A K +N V WT+ I +G + M E ++ + F+++L
Sbjct: 594 GFVEQALERVILHKHNNVVAWTSIITGLVDKGLHEEALKFLPVMRVEGVRPDGVAFAAML 653
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
AC G + G+++H+ +++ GLESD V LV MY +C L A ++ I +
Sbjct: 654 GACAGALNSDQ-GKKIHSQVLESGLESDSAVASSLVAMYARCGNLVTAYKMLTSIEQEHR 712
Query: 286 --------IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISAS 337
+ SWN + I++G + A M GI + + AC S S
Sbjct: 713 LEDHPKVLVVSWNNFIGACIQHGQHATAVTMFRRMLLEGIAPNKVSFITVLAACRMESTS 772
Query: 338 KIN 340
++
Sbjct: 773 RLG 775
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 68/298 (22%), Positives = 126/298 (42%), Gaps = 27/298 (9%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L+ N L+ + CG L A+ +F + + SW M + + + LF M+
Sbjct: 177 LVVGNVLVNFYGKCGDLPQAKIVFAGIRNKSTASWTSMAAANAENGHFSGALHLFRGMLL 236
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNM--ELGKQV--HGLLFKLGSSRNISLTGSLINF 161
H + F + +L AC C++ E+ +QV GL+ S ++S+ +L+
Sbjct: 237 DGLRHNIPSF-----LTMLHAC-CSLREADEIHRQVCESGLV-----SSDVSIGNALVKT 285
Query: 162 YGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTF 221
YGK +E A VF + + W A + + + G + F M E + N +F
Sbjct: 286 YGKLGEVERAMEVFETMAVRDLSSWNAVVASYAQNGCSEEAIAFFCRMLLEGVSPNGNSF 345
Query: 222 SSVLKACGGVDDDGNCGRQ----MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVF 277
+ + +C CG + + + + G ++D V L+ Y + R + A VF
Sbjct: 346 AGGVLSC-------VCGEKFSSLVRGCVEEGGFDADAAVSNALITFYSRSREVEKASEVF 398
Query: 278 ELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
+ + D+ N+ SWN+++ ++N A M+ G + + L AC +S
Sbjct: 399 QRL-DRPNLLSWNSIISACVQNDCADSAVLLFRKMQLQGFAADKFTLTSLLDACRCLS 455
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 72/284 (25%), Positives = 123/284 (43%), Gaps = 51/284 (17%)
Query: 43 KPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAE 102
+P LL N ++ V D+A LF +M L+ F + + +D C++L +
Sbjct: 403 RPNLLSWNSIISACVQNDCADSAVLLFRKMQLQGFAADKFTLTSLLDAC---RCLSLGTK 459
Query: 103 MMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTG-SLINF 161
+++ WI N EL Q+ ++ SL G +++N
Sbjct: 460 ILE------------WI------------NTELKLQL----------QHDSLLGIAMLNM 485
Query: 162 YGKFRCLEDADFVFSQ-LKRHNT----VVWTAKIVNNCREGHFHQVFNDFKEMGRE-RIK 215
+ K C A +F + R N+ V+W I + G F++ F+ M E
Sbjct: 486 FAKCGCPARAGEIFDDTITRTNSSCDVVLWNELIRSYVDNGCFYEAMQSFRMMLLEAAAS 545
Query: 216 KNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDA-E 274
NS T S VL AC +D C + + +++ G SD V LV M + + A E
Sbjct: 546 PNSVTLSRVLAAC----EDEPCRAMVESLVMESGWGSDAQVSNALVSMLARSGFVEQALE 601
Query: 275 RVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
RV ++ N+ +W +++ G + GL+ EA KFL +M+ G++
Sbjct: 602 RV--ILHKHNNVVAWTSIITGLVDKGLHEEALKFLPVMRVEGVR 643
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 63/270 (23%), Positives = 107/270 (39%), Gaps = 37/270 (13%)
Query: 50 NRLLLMHVSCGQLDTARQLF----DEMPLRDFN-----SWAVMIVGYVDVADYQECITLF 100
+ L+ M+ CG L TA ++ E L D SW I + + +T+F
Sbjct: 685 SSLVAMYARCGNLVTAYKMLTSIEQEHRLEDHPKVLVVSWNNFIGACIQHGQHATAVTMF 744
Query: 101 AEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLIN 160
M+ + F + VL AC LG VH + G + + SL +
Sbjct: 745 RRMLLEGIAPNKVSF-----ITVLAACRMESTSRLGHLVHSACEECGLFEDAFVKTSLGD 799
Query: 161 FYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYT 220
YGK L A + + + V W + + + G + EM ++ K N+ T
Sbjct: 800 MYGKLGNLATARQILRAVPVKSLVSWNSLVSAFAQHGRGEETVVFLWEMQQDGSKPNATT 859
Query: 221 FSSVLKACGGVDDDGNCGRQMHANIVKIGLES----------DEYVQCGLVDMYGKCRLL 270
F+SV+ NC + A V +ES E+++ G+V++ G+ L
Sbjct: 860 FASVI----------NC--SVEATEVYRWIESMRCDHGLVPGVEHLR-GVVEILGRQGKL 906
Query: 271 RDAERVFELIVDKKNIASWNAMLVGYIRNG 300
+AER+ + + A W ++L R+G
Sbjct: 907 GEAERIISKMAMEFRGAMWLSLLGWCRRHG 936
>gi|449445041|ref|XP_004140282.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27110-like [Cucumis sativus]
gi|449481162|ref|XP_004156100.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27110-like [Cucumis sativus]
Length = 693
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/284 (26%), Positives = 139/284 (48%), Gaps = 7/284 (2%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
L+ L+ M+ CG L+ A+++F+++P ++ +W MI GY D + CI L M
Sbjct: 245 LSALVDMYGKCGCLEMAKEVFEKIPRKNAITWNAMITGYSLKGDSRSCIELLMRMNDEGT 304
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
L+ + ++ A ++ + GK +HG + + +I + SLI+FY K +
Sbjct: 305 KPTLMTLTS-----IIYASSRSVQLRHGKFIHGYILRNRIDVDIFIDVSLIDFYFKCGYV 359
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
A+ +F + ++ V W I + G+ Q + + M +K ++ TFSS L AC
Sbjct: 360 SSAETIFRTISKNEVVSWNVMISGHVMVGNHIQALHIYDNMKEHHVKPDALTFSSTLSAC 419
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
+ GR++H I+ LE++E V L+DMY KC + +A ++F + K+++ S
Sbjct: 420 SQLAALDK-GRELHYCIINHKLEANEIVMGALLDMYAKCGDVDEARKLFHQL-PKRDLVS 477
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
W +M+ Y +G EA + M+ ++ + ACS
Sbjct: 478 WTSMIFAYGSHGQASEALRLFDEMQKLNVRADSVTFLAVLSACS 521
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/287 (26%), Positives = 127/287 (44%), Gaps = 7/287 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+ L+ M+ C Q A +LFDE P RD W +I Y + + F +M +
Sbjct: 145 SSLMNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVISCYFKDGKAEMALKTFDKMKELGFE 204
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ F V+ +C +N+E GK+VH L + + + +L++ YGK CLE
Sbjct: 205 PNSVTF-----TVVVSSCTRLLNLERGKEVHRELIERRILLDAFVLSALVDMYGKCGCLE 259
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A VF ++ R N + W A I +G M E K T +S++ A
Sbjct: 260 MAKEVFEKIPRKNAITWNAMITGYSLKGDSRSCIELLMRMNDEGTKPTLMTLTSIIYA-S 318
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
G+ +H I++ ++ D ++ L+D Y KC + AE +F I K + SW
Sbjct: 319 SRSVQLRHGKFIHGYILRNRIDVDIFIDVSLIDFYFKCGYVSSAETIFRTI-SKNEVVSW 377
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
N M+ G++ G +++A MK ++ + ACS ++A
Sbjct: 378 NVMISGHVMVGNHIQALHIYDNMKEHHVKPDALTFSSTLSACSQLAA 424
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 74/269 (27%), Positives = 127/269 (47%), Gaps = 9/269 (3%)
Query: 52 LLLMHVSCGQLDTARQLF--DEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
L+ + SC +A +F ++ PL D + W ++ Y + + E + LF ++
Sbjct: 44 LIGFYFSCHDYASAELVFQTNDCPL-DVSLWNALLSAYTNNFRFVEALQLFDQL--NCNS 100
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
++ F + +V LKAC + G+++H L K G ++ + SL+N Y K
Sbjct: 101 YVRPDFYTYPVV--LKACGGLGRVIYGRRIHNHLLKTGLIWDVFVGSSLMNMYAKCDQFV 158
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
DA +F + + + W A I ++G F +M + NS TF+ V+ +C
Sbjct: 159 DAIKLFDEFPQRDVGCWNAVISCYFKDGKAEMALKTFDKMKELGFEPNSVTFTVVVSSCT 218
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ + G+++H +++ + D +V LVDMYGKC L A+ VFE I +KN +W
Sbjct: 219 RLLNLER-GKEVHRELIERRILLDAFVLSALVDMYGKCGCLEMAKEVFEKI-PRKNAITW 276
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
NAM+ GY G + L M G +
Sbjct: 277 NAMITGYSLKGDSRSCIELLMRMNDEGTK 305
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 99/203 (48%), Gaps = 8/203 (3%)
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
++ L+ C + ++ GK +H +F G NI L+ SLI FY A+ VF
Sbjct: 6 LLSALRTCTSSKLLKQGKLIHQRIFSCGFQSNIVLSKSLIGFYFSCHDYASAELVFQTND 65
Query: 180 -RHNTVVWTAKIVNNCREGHFHQVFNDFKEMG-RERIKKNSYTFSSVLKACGGVDDDGNC 237
+ +W A + F + F ++ ++ + YT+ VLKACGG+ G
Sbjct: 66 CPLDVSLWNALLSAYTNNFRFVEALQLFDQLNCNSYVRPDFYTYPVVLKACGGL---GRV 122
Query: 238 --GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
GR++H +++K GL D +V L++MY KC DA ++F+ ++++ WNA++
Sbjct: 123 IYGRRIHNHLLKTGLIWDVFVGSSLMNMYAKCDQFVDAIKLFDEF-PQRDVGCWNAVISC 181
Query: 296 YIRNGLYVEATKFLYLMKASGIQ 318
Y ++G A K MK G +
Sbjct: 182 YFKDGKAEMALKTFDKMKELGFE 204
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/249 (24%), Positives = 121/249 (48%), Gaps = 19/249 (7%)
Query: 36 IRKRVNIKPTLLFLN-RLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQ 94
+R R+++ +F++ L+ + CG + +A +F + + SW VMI G+V V ++
Sbjct: 335 LRNRIDVD---IFIDVSLIDFYFKCGYVSSAETIFRTISKNEVVSWNVMISGHVMVGNHI 391
Query: 95 ECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISL 154
+ + ++ M + L F + L AC ++ G+++H + N +
Sbjct: 392 QALHIYDNMKEHHVKPDALTFSS-----TLSACSQLAALDKGRELHYCIINHKLEANEIV 446
Query: 155 TGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERI 214
G+L++ Y K +++A +F QL + + V WT+ I G + F EM + +
Sbjct: 447 MGALLDMYAKCGDVDEARKLFHQLPKRDLVSWTSMIFAYGSHGQASEALRLFDEMQKLNV 506
Query: 215 KKNSYTFSSVLKAC--GGVDDDGNCGRQMHAN--IVKIGLESD-EYVQCGLVDMYGKCRL 269
+ +S TF +VL AC G+ D+G M+ N +V+ ++ E+ C L+D+ G+
Sbjct: 507 RADSVTFLAVLSACSHAGLVDEG----YMYFNEMVVQYDIKPGIEHYSC-LIDLLGRAGR 561
Query: 270 LRDAERVFE 278
L +A + +
Sbjct: 562 LHEAYEILQ 570
>gi|15226737|ref|NP_181604.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75276036|sp|Q7XJN6.1|PP197_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g40720
gi|330254774|gb|AEC09868.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 860
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 88/294 (29%), Positives = 139/294 (47%), Gaps = 20/294 (6%)
Query: 52 LLLMHVSCGQLDTARQLFDE-------MPLRDFNSWAVMIVGYVDVADYQECITLFAEMM 104
L+ M+V CG LD A Q+FD + RD W MI GY ++E + F M+
Sbjct: 101 LVNMYVKCGFLDYAVQVFDGWSQSQSGVSARDVTVWNSMIDGYFKFRRFKEGVGCFRRML 160
Query: 105 KRKKGHMLLVFPAWIIVCVLKACVC---TMNMELGKQVHGLLFKLGSSRNISLTGSLINF 161
+ V P + ++ + +C E GKQ+HG + + + L +LI+
Sbjct: 161 ------VFGVRPDAFSLSIVVSVMCKEGNFRREEGKQIHGFMLRNSLDTDSFLKTALIDM 214
Query: 162 YGKFRCLEDADFVFSQLK-RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYT 220
Y KF DA VF +++ + N V+W IV G + + +K S +
Sbjct: 215 YFKFGLSIDAWRVFVEIEDKSNVVLWNVMIVGFGGSGICESSLDLYMLAKNNSVKLVSTS 274
Query: 221 FSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELI 280
F+ L AC ++ G GRQ+H ++VK+GL +D YV L+ MY KC ++ +AE VF +
Sbjct: 275 FTGALGACSQSENSG-FGRQIHCDVVKMGLHNDPYVCTSLLSMYSKCGMVGEAETVFSCV 333
Query: 281 VDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
VDK+ + WNAM+ Y N A M+ + + +S I+C S+
Sbjct: 334 VDKR-LEIWNAMVAAYAENDYGYSALDLFGFMRQKSV-LPDSFTLSNVISCCSV 385
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 80/289 (27%), Positives = 133/289 (46%), Gaps = 13/289 (4%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL M+ CG + A +F + + W M+ Y + + LF M ++
Sbjct: 313 LLSMYSKCGMVGEAETVFSCVVDKRLEIWNAMVAAYAENDYGYSALDLFGFMRQKS---- 368
Query: 112 LLVFPAWIIVCVLKACVCTMNM-ELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
V P + + +C + + GK VH LFK ++ +L+ Y K C D
Sbjct: 369 --VLPDSFTLSNVISCCSVLGLYNYGKSVHAELFKRPIQSTSTIESALLTLYSKCGCDPD 426
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQ---VFNDFKEMGRERIKKNSYTFSSVLKA 227
A VF ++ + V W + I C+ G F + VF D K+ + +K +S +SV A
Sbjct: 427 AYLVFKSMEEKDMVAWGSLISGLCKNGKFKEALKVFGDMKD-DDDSLKPDSDIMTSVTNA 485
Query: 228 CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
C G++ G Q+H +++K GL + +V L+D+Y KC L A +VF + +N+
Sbjct: 486 CAGLEAL-RFGLQVHGSMIKTGLVLNVFVGSSLIDLYSKCGLPEMALKVFTSM-STENMV 543
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+WN+M+ Y RN L + LM + GI I + +A SS ++
Sbjct: 544 AWNSMISCYSRNNLPELSIDLFNLMLSQGIFPDSVSITSVLVAISSTAS 592
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 80/290 (27%), Positives = 130/290 (44%), Gaps = 5/290 (1%)
Query: 42 IKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFA 101
I+ T + LL ++ CG A +F M +D +W +I G ++E + +F
Sbjct: 404 IQSTSTIESALLTLYSKCGCDPDAYLVFKSMEEKDMVAWGSLISGLCKNGKFKEALKVFG 463
Query: 102 EMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINF 161
+M K L + I+ V AC + G QVHG + K G N+ + SLI+
Sbjct: 464 DM---KDDDDSLKPDSDIMTSVTNACAGLEALRFGLQVHGSMIKTGLVLNVFVGSSLIDL 520
Query: 162 YGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTF 221
Y K E A VF+ + N V W + I R + F M + I +S +
Sbjct: 521 YSKCGLPEMALKVFTSMSTENMVAWNSMISCYSRNNLPELSIDLFNLMLSQGIFPDSVSI 580
Query: 222 SSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIV 281
+SVL A G+ +H +++G+ SD +++ L+DMY KC + AE +F+ +
Sbjct: 581 TSVLVAISSTASLLK-GKSLHGYTLRLGIPSDTHLKNALIDMYVKCGFSKYAENIFKKM- 638
Query: 282 DKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
K++ +WN M+ GY +G + A MK +G + L AC
Sbjct: 639 QHKSLITWNLMIYGYGSHGDCITALSLFDEMKKAGESPDDVTFLSLISAC 688
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 108/229 (47%), Gaps = 12/229 (5%)
Query: 116 PAWIIV----CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
P W V +LKAC N+ GK +HG + LG + + SL+N Y K L+ A
Sbjct: 55 PFWTSVFTFPSLLKACSALTNLSYGKTIHGSVVVLGWRYDPFIATSLVNMYVKCGFLDYA 114
Query: 172 DFVF-------SQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
VF S + + VW + I + F + F+ M ++ ++++ S V
Sbjct: 115 VQVFDGWSQSQSGVSARDVTVWNSMIDGYFKFRRFKEGVGCFRRMLVFGVRPDAFSLSIV 174
Query: 225 LKA-CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
+ C + G+Q+H +++ L++D +++ L+DMY K L DA RVF I DK
Sbjct: 175 VSVMCKEGNFRREEGKQIHGFMLRNSLDTDSFLKTALIDMYFKFGLSIDAWRVFVEIEDK 234
Query: 284 KNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
N+ WN M+VG+ +G+ + L K + +++ + ACS
Sbjct: 235 SNVVLWNVMIVGFGGSGICESSLDLYMLAKNNSVKLVSTSFTGALGACS 283
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 83/363 (22%), Positives = 141/363 (38%), Gaps = 58/363 (15%)
Query: 2 DNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLN-----RLLLMH 56
D+ L +D+ T + C AG L ++ ++ T L LN L+ ++
Sbjct: 468 DDDSLKPDSDIMTSVTNAC------AGLEALRFGLQVHGSMIKTGLVLNVFVGSSLIDLY 521
Query: 57 VSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP 116
CG + A ++F M + +W MI Y + I LF M+ + +FP
Sbjct: 522 SKCGLPEMALKVFTSMSTENMVAWNSMISCYSRNNLPELSIDLFNLMLSQG------IFP 575
Query: 117 AWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVF 175
+ I VL A T ++ GK +HG +LG + L +LI+ Y K + A+ +F
Sbjct: 576 DSVSITSVLVAISSTASLLKGKSLHGYTLRLGIPSDTHLKNALIDMYVKCGFSKYAENIF 635
Query: 176 SQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC---GGVD 232
+++ + + W I G + F EM + + TF S++ AC G V+
Sbjct: 636 KKMQHKSLITWNLMIYGYGSHGDCITALSLFDEMKKAGESPDDVTFLSLISACNHSGFVE 695
Query: 233 DDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAM 292
+ N M + G+E + +VD+ G+ LL +A + + + + + W +
Sbjct: 696 EGKNIFEFMKQD---YGIEPNMEHYANMVDLLGRAGLLEEAYSFIKAMPIEADSSIWLCL 752
Query: 293 LVG----------------------------------YIRNGLYVEATKFLYLMKASGIQ 318
L Y+ GL EA K L LMK G+
Sbjct: 753 LSASRTHHNVELGILSAEKLLRMEPERGSTYVQLINLYMEAGLKNEAAKLLGLMKEKGLH 812
Query: 319 IQE 321
Q
Sbjct: 813 KQP 815
>gi|302816284|ref|XP_002989821.1| hypothetical protein SELMODRAFT_130453 [Selaginella moellendorffii]
gi|300142387|gb|EFJ09088.1| hypothetical protein SELMODRAFT_130453 [Selaginella moellendorffii]
Length = 941
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/284 (27%), Positives = 130/284 (45%), Gaps = 7/284 (2%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+ C ++ A +FD + ++ SW +M+ Y Y+E + LF M +V
Sbjct: 1 MYGKCARVTDALMVFDGISAKNVFSWTMMMAAYSQNGHYREALELFTRMQWEGTRPDKVV 60
Query: 115 FPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFV 174
F V L AC + ++ G+Q+H + G + NI ++ SL+N YGK + + A+ V
Sbjct: 61 F-----VIALDACAASGELDHGRQIHSSVVGSGLTSNIIISNSLVNMYGKCQDVPCAEKV 115
Query: 175 FSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDD 234
F + + V WTA + + G + Q M E +K N TF +++ C +
Sbjct: 116 FDGMLLRDVVSWTAMLAVYAQNGCWSQALECLSRMDAEGVKPNQVTFVTIVDVCAKLRLL 175
Query: 235 GNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLV 294
+ GR++H I+ GLE D + LV MYG C D + VF + + ++ W M+
Sbjct: 176 -DLGRKIHHRIINEGLEPDGILGNALVHMYGSCGSFDDMKSVFSRM-GQSSVLLWTTMIA 233
Query: 295 GYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASK 338
G +NG Y E M G++ E + C ++ A K
Sbjct: 234 GCSQNGQYEEGLLVFRKMDLEGVKANEVTYMSMVEVCRNLDAVK 277
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 130/271 (47%), Gaps = 11/271 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N ++ M+ CGQ + A +F+ MP +D SW +I V + +Q+ + LF M
Sbjct: 401 NSVITMYGKCGQTEAAMSVFEAMPRKDDVSWNAVINASVGNSKFQDALELFHGMELEG-- 458
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTG-SLINFYGKFRCL 168
L + ++ +L+AC +++L +Q+H G N + G S++N Y + L
Sbjct: 459 ---LRSNEFTLLSLLEACGGLEDLKLARQIHARAAAGGFGGNSTAVGNSVVNMYARCGSL 515
Query: 169 EDADFVFSQLKRHNTVVWTAKIVN--NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
DA F L+ V W+ + ++G + F F+EM E IK TF S L
Sbjct: 516 LDAKKAFDSLEEKGLVAWSIILAAYAQSKDGPGRRAFKFFQEMEAEGIKPGEVTFVSALD 575
Query: 227 ACGGVDDDGNCGRQMHANIVKIG-LESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
AC + + GR MH G +E+ + +++MYGKC DA+ VF+ + +K
Sbjct: 576 ACAAMATLEH-GRSMHRRAAASGFVETSLVLGNTIINMYGKCGSPSDAKLVFDQMPEKCL 634
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASG 316
I SWN+++V Y NG +EA L M G
Sbjct: 635 I-SWNSLIVAYAHNGHALEALSSLQEMLLQG 664
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 83/295 (28%), Positives = 137/295 (46%), Gaps = 11/295 (3%)
Query: 45 TLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMM 104
+ L L+ ++ CG LD A+ L + M RD +W M+ D E I L M
Sbjct: 294 STLLATSLISLYGQCGILDRAKGLLEHMYQRDVVAWNAMVTACAQNGDNWEAIHLLRRMD 353
Query: 105 KRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGS-SRNISLTGSLINFYG 163
G + + + VL+AC + G+++H + G R +++ S+I YG
Sbjct: 354 MEGFGANKVTY-----LSVLEACANLEALSQGREIHARVLLCGLLQREVAVGNSVITMYG 408
Query: 164 KFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSS 223
K E A VF + R + V W A I + F F M E ++ N +T S
Sbjct: 409 KCGQTEAAMSVFEAMPRKDDVSWNAVINASVGNSKFQDALELFHGMELEGLRSNEFTLLS 468
Query: 224 VLKACGGVDDDGNCGRQMHANIVKIGLESDEY-VQCGLVDMYGKCRLLRDAERVFELIVD 282
+L+ACGG++D RQ+HA G + V +V+MY +C L DA++ F+ + +
Sbjct: 469 LLEACGGLEDL-KLARQIHARAAAGGFGGNSTAVGNSVVNMYARCGSLLDAKKAFDSL-E 526
Query: 283 KKNIASWNAMLVGYI--RNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
+K + +W+ +L Y ++G A KF M+A GI+ E AC++++
Sbjct: 527 EKGLVAWSIILAAYAQSKDGPGRRAFKFFQEMEAEGIKPGEVTFVSALDACAAMA 581
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/318 (23%), Positives = 144/318 (45%), Gaps = 13/318 (4%)
Query: 25 DSAGAFELLNHIRK------RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFN 78
D+ A L+H R+ + ++ N L+ M+ C + A ++FD M LRD
Sbjct: 66 DACAASGELDHGRQIHSSVVGSGLTSNIIISNSLVNMYGKCQDVPCAEKVFDGMLLRDVV 125
Query: 79 SWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQ 138
SW M+ Y + + + + M + F V ++ C ++LG++
Sbjct: 126 SWTAMLAVYAQNGCWSQALECLSRMDAEGVKPNQVTF-----VTIVDVCAKLRLLDLGRK 180
Query: 139 VHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGH 198
+H + G + L +L++ YG +D VFS++ + + ++WT I + G
Sbjct: 181 IHHRIINEGLEPDGILGNALVHMYGSCGSFDDMKSVFSRMGQSSVLLWTTMIAGCSQNGQ 240
Query: 199 FHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQC 258
+ + F++M E +K N T+ S+++ C +D G + A I++ S +
Sbjct: 241 YEEGLLVFRKMDLEGVKANEVTYMSMVEVCRNLDAVKE-GEMIDARILESPFCSSTLLAT 299
Query: 259 GLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
L+ +YG+C +L A+ + E + ++++ +WNAM+ +NG EA L M G
Sbjct: 300 SLISLYGQCGILDRAKGLLEHMY-QRDVVAWNAMVTACAQNGDNWEAIHLLRRMDMEGFG 358
Query: 319 IQESLINDLRIACSSISA 336
+ + AC+++ A
Sbjct: 359 ANKVTYLSVLEACANLEA 376
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 74/300 (24%), Positives = 133/300 (44%), Gaps = 8/300 (2%)
Query: 41 NIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLF 100
++P + N L+ M+ SCG D + +F M W MI G Y+E + +F
Sbjct: 189 GLEPDGILGNALVHMYGSCGSFDDMKSVFSRMGQSSVLLWTTMIAGCSQNGQYEEGLLVF 248
Query: 101 AEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLIN 160
+M + + + + VC V + G+ + + + + L SLI+
Sbjct: 249 RKMDLEGVKANEVTYMSMVEVCRNLDAV-----KEGEMIDARILESPFCSSTLLATSLIS 303
Query: 161 FYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYT 220
YG+ L+ A + + + + V W A + + G + + + M E N T
Sbjct: 304 LYGQCGILDRAKGLLEHMYQRDVVAWNAMVTACAQNGDNWEAIHLLRRMDMEGFGANKVT 363
Query: 221 FSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEY-VQCGLVDMYGKCRLLRDAERVFEL 279
+ SVL+AC ++ GR++HA ++ GL E V ++ MYGKC A VFE
Sbjct: 364 YLSVLEACANLEALSQ-GREIHARVLLCGLLQREVAVGNSVITMYGKCGQTEAAMSVFEA 422
Query: 280 IVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKI 339
+ K ++ SWNA++ + N + +A + + M+ G++ E + L AC + K+
Sbjct: 423 MPRKDDV-SWNAVINASVGNSKFQDALELFHGMELEGLRSNEFTLLSLLEACGGLEDLKL 481
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 99/237 (41%), Gaps = 20/237 (8%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADY--QECITLFAEMMKR- 106
N ++ M+ CG L A++ FD + + +W++++ Y D + F EM
Sbjct: 503 NSVVNMYARCGSLLDAKKAFDSLEEKGLVAWSIILAAYAQSKDGPGRRAFKFFQEMEAEG 562
Query: 107 -KKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLG-SSRNISLTGSLINFYGK 164
K G + V L AC +E G+ +H G ++ L ++IN YGK
Sbjct: 563 IKPGEV-------TFVSALDACAAMATLEHGRSMHRRAAASGFVETSLVLGNTIINMYGK 615
Query: 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
DA VF Q+ + W + IV GH + + +EM + +S T S+
Sbjct: 616 CGSPSDAKLVFDQMPEKCLISWNSLIVAYAHNGHALEALSSLQEMLLQGFDPDSGTSVSI 675
Query: 225 LKACGGVDDDGNCGR---QMHANIVKIGLE-SDEYVQCGLVDMYGKCRLLRDAERVF 277
L G+ G R ++I GLE S ++C LVD+ + L AE +
Sbjct: 676 LY---GLSHAGLLERGVEHFRSSIQDHGLEPSSGQLKC-LVDLLARKGFLDAAEELI 728
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 9/95 (9%)
Query: 19 ECTFQK--DSAGAFELLNHIR---KRVN----IKPTLLFLNRLLLMHVSCGQLDTARQLF 69
E TF D+ A L H R +R ++ +L+ N ++ M+ CG A+ +F
Sbjct: 567 EVTFVSALDACAAMATLEHGRSMHRRAAASGFVETSLVLGNTIINMYGKCGSPSDAKLVF 626
Query: 70 DEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMM 104
D+MP + SW +IV Y E ++ EM+
Sbjct: 627 DQMPEKCLISWNSLIVAYAHNGHALEALSSLQEML 661
>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 908
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 90/311 (28%), Positives = 150/311 (48%), Gaps = 13/311 (4%)
Query: 26 SAGAFELLNHIRK---RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAV 82
S GA+E + + K V + L + + M++ CG +D A+ +FD++ +R+ +W
Sbjct: 347 STGAWEWVKEVHKHAVEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRNVTTWNA 406
Query: 83 MIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHG 141
MI G +E ++LF +M R++G FP A V +L A V +E K+VH
Sbjct: 407 MIGGVAQQKCGREALSLFLQM--RREG----FFPDATTFVNILSANVGEEALEWVKEVHS 460
Query: 142 LLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQ 201
G ++ + +L++ Y K A VF + N WT I + G H+
Sbjct: 461 YAIDAGLV-DLRVGNALVHMYAKCGNTMYAKQVFDDMVERNVTTWTVMISGLAQHGCGHE 519
Query: 202 VFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLV 261
F+ F +M RE I ++ T+ S+L AC +++H++ V GL SD V LV
Sbjct: 520 AFSLFLQMLREGIVPDATTYVSILSACASTGAL-EWVKEVHSHAVNAGLVSDLRVGNALV 578
Query: 262 DMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQE 321
MY KC + DA RVF+ +++ +++ SW M+ G ++G ++A MK G +
Sbjct: 579 HMYAKCGSVDDARRVFDDMLE-RDVYSWTVMIGGLAQHGRGLDALDLFVKMKLEGFKPNG 637
Query: 322 SLINDLRIACS 332
+ ACS
Sbjct: 638 YSFVAVLSACS 648
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 87/312 (27%), Positives = 144/312 (46%), Gaps = 30/312 (9%)
Query: 26 SAGAFELLNHIRKRV---NIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAV 82
SAGA E + + + L N L+ M+ G +D AR +FD M RD SW V
Sbjct: 143 SAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMVERDIFSWTV 202
Query: 83 MIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGL 142
MI G QE +LF +M ++G L ++ + A T +E K+VH
Sbjct: 203 MIGGLAQHGRGQEAFSLFLQM---ERGGCLPNLTTYLSILNASAITSTGALEWVKEVHKH 259
Query: 143 LFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQV 202
K G ++ + +LI+ Y K ++DA VF + + + W A I + G H+
Sbjct: 260 AGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMIGGLAQNGCGHEA 319
Query: 203 FNDFKEMGRERIKKNSYTFSSVLK---ACGGVDDDGNCGRQMHANIVKIGLESDEYVQCG 259
F F +M +E +S T+ S+L + G + +++H + V++GL SD V
Sbjct: 320 FTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWE----WVKEVHKHAVEVGLVSDLRVGSA 375
Query: 260 LVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYI----------------RNGLYV 303
V MY +C + DA+ +F+ + +N+ +WNAM+ G R G +
Sbjct: 376 FVHMYIRCGSIDDAQLIFDKLA-VRNVTTWNAMIGGVAQQKCGREALSLFLQMRREGFFP 434
Query: 304 EATKFLYLMKAS 315
+AT F+ ++ A+
Sbjct: 435 DATTFVNILSAN 446
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 78/267 (29%), Positives = 125/267 (46%), Gaps = 9/267 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+V CG +D A+ +FD+M R+ SW VMI G QE F +M +
Sbjct: 71 LVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFLQMQREG---- 126
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+ ++ V +L A +E K+VH G + ++ + +L++ Y K ++DA
Sbjct: 127 -FIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDA 185
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
VF + + WT I + G + F+ F +M R N T+ S+L A +
Sbjct: 186 RVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILNAS-AI 244
Query: 232 DDDGNCG--RQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
G +++H + K G SD V L+ MY KC + DA VF+ + D +++ SW
Sbjct: 245 TSTGALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCD-RDVISW 303
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASG 316
NAM+ G +NG EA M+ G
Sbjct: 304 NAMIGGLAQNGCGHEAFTIFLKMQQEG 330
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 89/335 (26%), Positives = 147/335 (43%), Gaps = 14/335 (4%)
Query: 5 CLPITTDMYTCLIKECTFQKDSAGAFELLNHIRK---RVNIKPTLLFLNRLLLMHVSCGQ 61
CLP T + L S GA E + + K + L N L+ M+ CG
Sbjct: 228 CLPNLTTYLSILNASAI---TSTGALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGS 284
Query: 62 LDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIV 121
+D AR +FD M RD SW MI G E T+F +M + V + +
Sbjct: 285 IDDARLVFDGMCDRDVISWNAMIGGLAQNGCGHEAFTIFLKMQQEG-----FVPDSTTYL 339
Query: 122 CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH 181
+L V T E K+VH ++G ++ + + ++ Y + ++DA +F +L
Sbjct: 340 SLLNTHVSTGAWEWVKEVHKHAVEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVR 399
Query: 182 NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQM 241
N W A I ++ + + F +M RE ++ TF ++L A G ++ +++
Sbjct: 400 NVTTWNAMIGGVAQQKCGREALSLFLQMRREGFFPDATTFVNILSANVG-EEALEWVKEV 458
Query: 242 HANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGL 301
H+ + GL D V LV MY KC A++VF+ +V++ N+ +W M+ G ++G
Sbjct: 459 HSYAIDAGL-VDLRVGNALVHMYAKCGNTMYAKQVFDDMVER-NVTTWTVMISGLAQHGC 516
Query: 302 YVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
EA M GI + + AC+S A
Sbjct: 517 GHEAFSLFLQMLREGIVPDATTYVSILSACASTGA 551
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/240 (28%), Positives = 121/240 (50%), Gaps = 19/240 (7%)
Query: 83 MIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWII-VCVLKACVCTMNMELGKQVHG 141
MI GY + ++ + ++++M +R+ G P I + +LKAC ++++ GK++H
Sbjct: 1 MIGGYAEYGYAEDAMKVYSQM-RREGGQ-----PNEITYLSILKACCSPVSLKWGKKIHA 54
Query: 142 LLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQ 201
+ + G ++ + +L+N Y K ++DA +F ++ N + WT I G +
Sbjct: 55 HIIQSGFQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQE 114
Query: 202 VFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCG-----RQMHANIVKIGLESDEYV 256
F+ F +M RE NSYT+ S+L A + + G +++H++ V GL D V
Sbjct: 115 AFHRFLQMQREGFIPNSYTYVSILNA------NASAGALEWVKEVHSHAVNAGLALDLRV 168
Query: 257 QCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASG 316
LV MY K + DA VF+ +V+ ++I SW M+ G ++G EA M+ G
Sbjct: 169 GNALVHMYAKSGSIDDARVVFDGMVE-RDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGG 227
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 72/247 (29%), Positives = 115/247 (46%), Gaps = 11/247 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ CG A+Q+FD+M R+ +W VMI G E +LF +M++
Sbjct: 474 NALVHMYAKCGNTMYAKQVFDDMVERNVTTWTVMISGLAQHGCGHEAFSLFLQMLREG-- 531
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+V A V +L AC T +E K+VH G ++ + +L++ Y K ++
Sbjct: 532 ---IVPDATTYVSILSACASTGALEWVKEVHSHAVNAGLVSDLRVGNALVHMYAKCGSVD 588
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC- 228
DA VF + + WT I + G + F +M E K N Y+F +VL AC
Sbjct: 589 DARRVFDDMLERDVYSWTVMIGGLAQHGRGLDALDLFVKMKLEGFKPNGYSFVAVLSACS 648
Query: 229 -GGVDDDGNCGRQMHANIVKIGLESD-EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
G+ D+G RQ + G+E E+ C +VD+ G+ L +A+ + +
Sbjct: 649 HAGLVDEGR--RQFLSLTQDYGIEPTMEHYTC-MVDLLGRAGQLEEAKHFILNMPIEPGD 705
Query: 287 ASWNAML 293
A W A+L
Sbjct: 706 APWGALL 712
>gi|347954474|gb|AEP33737.1| chlororespiratory reduction 21 [Nasturtium officinale]
Length = 826
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/315 (26%), Positives = 152/315 (48%), Gaps = 10/315 (3%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFL-NRLLLMHVSC 59
MD L I ++Y +++ C +++D ++ I K + ++ +L++ + C
Sbjct: 59 MDFRKLRIGPEIYGEILQGCVYERDLCTGKQIHARILKNGDFYAKNEYIETKLVIFYAKC 118
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AW 118
+ + LF ++ +R+ SWA +I + +E + F EM++ + +FP +
Sbjct: 119 DAFEASEVLFSKLRVRNVYSWAAIIGVKCRIGLCEEALMGFVEMLQNE------IFPDNF 172
Query: 119 IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL 178
++ V KAC G+ VHG + K G + + SL + YGK L+DA VF ++
Sbjct: 173 VVPNVCKACGALQWSRFGRGVHGYVVKSGLHDCVFVASSLADMYGKCGVLDDARKVFDEI 232
Query: 179 KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCG 238
N V W A +V + G + +M +E I+ T S+ L A +D G
Sbjct: 233 PERNVVAWNALMVGYVQNGMNEEAIRLLSDMRKEGIEPTRVTVSTCLSASANMDGIEE-G 291
Query: 239 RQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIR 298
+Q HA + GLE D + ++ Y K L+ AE +F+ +++ K++ +WN ++ GY++
Sbjct: 292 KQSHAIAIVNGLELDNILGTSNLNFYCKVGLIEYAEMIFDRMIE-KDVVTWNLLISGYVQ 350
Query: 299 NGLYVEATKFLYLMK 313
GL +A LM+
Sbjct: 351 QGLVEDAIHMCQLMR 365
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 75/264 (28%), Positives = 130/264 (49%), Gaps = 9/264 (3%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+ CG LD AR++FDE+P R+ +W ++VGYV +E I L ++M RK+G +
Sbjct: 215 MYGKCGVLDDARKVFDEIPERNVVAWNALMVGYVQNGMNEEAIRLLSDM--RKEG----I 268
Query: 115 FPAWIIVCVLKACVCTMN-MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADF 173
P + V + M+ +E GKQ H + G + L S +NFY K +E A+
Sbjct: 269 EPTRVTVSTCLSASANMDGIEEGKQSHAIAIVNGLELDNILGTSNLNFYCKVGLIEYAEM 328
Query: 174 VFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDD 233
+F ++ + V W I ++G + + M E +K + T S+++ A +
Sbjct: 329 IFDRMIEKDVVTWNLLISGYVQQGLVEDAIHMCQLMRLENLKYDCVTLSTLMSAAARTQN 388
Query: 234 DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
G+++ ++ SD + VDMY C + DA++VF+ ++ K++ WN +L
Sbjct: 389 -LKLGKEVQCYCIRHSFASDIVLASTAVDMYANCGSIIDAKKVFDSVL-AKDLILWNTLL 446
Query: 294 VGYIRNGLYVEATKFLYLMKASGI 317
Y +GL EA + Y M+ +
Sbjct: 447 SVYAESGLSGEAFRLFYEMQLESV 470
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/280 (21%), Positives = 119/280 (42%), Gaps = 44/280 (15%)
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI 119
G ++ A +FD M +D +W ++I GYV ++ I + ++M+ + L +
Sbjct: 321 GLIEYAEMIFDRMIEKDVVTWNLLISGYVQQGLVEDAIHM-CQLMRLEN----LKYDCVT 375
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
+ ++ A T N++LGK+V + + +I L + ++ Y + DA VF +
Sbjct: 376 LSTLMSAAARTQNLKLGKEVQCYCIRHSFASDIVLASTAVDMYANCGSIIDAKKVFDSVL 435
Query: 180 RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGR 239
+ ++W + G + F F EM E + N+ T++ ++ +
Sbjct: 436 AKDLILWNTLLSVYAESGLSGEAFRLFYEMQLESVPPNAITWNLIILS------------ 483
Query: 240 QMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK---KNIASWNAMLVGY 296
+++ G V+ +A+ +F + N+ SW M+ G
Sbjct: 484 ---------------FLRNGQVN---------EAKEIFSQMQSSGIFPNLVSWTTMMNGL 519
Query: 297 IRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
++NG EA FL M+ SG++ I ACS++++
Sbjct: 520 VQNGCSEEAILFLRKMQESGLRPNAFSITVALSACSNLAS 559
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 93/213 (43%), Gaps = 11/213 (5%)
Query: 26 SAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMP----LRDFNSWA 81
S AF L ++ ++ P + N ++L + GQ++ A+++F +M + SW
Sbjct: 455 SGEAFRLFYEMQLE-SVPPNAITWNLIILSFLRNGQVNEAKEIFSQMQSSGIFPNLVSWT 513
Query: 82 VMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHG 141
M+ G V +E I +M + L A+ I L AC ++ G+ VHG
Sbjct: 514 TMMNGLVQNGCSEEAILFLRKMQESG-----LRPNAFSITVALSACSNLASLHFGRSVHG 568
Query: 142 LLFK-LGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFH 200
+ + S ++ + SL++ Y K + A+ VF + ++ A I G+
Sbjct: 569 YIIRNQQHSSSVLIETSLVDMYAKCGDINKAEMVFRSKLCSDLPLYNAMISAYALNGNVK 628
Query: 201 QVFNDFKEMGRERIKKNSYTFSSVLKACGGVDD 233
+ + + IK ++ TF+S+L AC D
Sbjct: 629 EAIALCRRLEDTGIKPDNITFTSLLSACNHAGD 661
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 69/285 (24%), Positives = 115/285 (40%), Gaps = 51/285 (17%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+ +CG + A+++FD + +D W ++ Y + E LF EM + V
Sbjct: 417 MYANCGSIIDAKKVFDSVLAKDLILWNTLLSVYAESGLSGEAFRLFYEM------QLESV 470
Query: 115 FPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFV 174
P I T N L L RN G+ + +A +
Sbjct: 471 PPNAI----------TWN----------LIILSFLRN-----------GQ---VNEAKEI 496
Query: 175 FSQLKRH----NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
FSQ++ N V WT + + G + ++M ++ N+++ + L AC
Sbjct: 497 FSQMQSSGIFPNLVSWTTMMNGLVQNGCSEEAILFLRKMQESGLRPNAFSITVALSACSN 556
Query: 231 VDDDGNCGRQMHANIVKIGLESDEY-VQCGLVDMYGKCRLLRDAERVF--ELIVDKKNIA 287
+ + GR +H I++ S ++ LVDMY KC + AE VF +L D +
Sbjct: 557 LAS-LHFGRSVHGYIIRNQQHSSSVLIETSLVDMYAKCGDINKAEMVFRSKLCSD---LP 612
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+NAM+ Y NG EA ++ +GI+ L AC+
Sbjct: 613 LYNAMISAYALNGNVKEAIALCRRLEDTGIKPDNITFTSLLSACN 657
>gi|255554336|ref|XP_002518208.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223542804|gb|EEF44341.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 506
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/272 (30%), Positives = 130/272 (47%), Gaps = 19/272 (6%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADY---QECITLFAEMMKR 106
N L+ M+ CG+ A +LFDEMP R SW V+I GY D D Q+ + L +M
Sbjct: 167 NSLMSMYCKCGEFSEALKLFDEMPERSVGSWNVVIAGYSDSGDRNLNQQIVDLVKDMQID 226
Query: 107 KKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFK-------LGSSRNISLTGSLI 159
+ +++C ++ G+++HG + + LGS ++ L LI
Sbjct: 227 GFKPNAFTVSSLLVLCDGD----IEKLDYGRELHGFIVRNELDLGCLGS--DVHLGSCLI 280
Query: 160 NFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEM-GRERIKKNS 218
+ Y + +E +F Q+KR N VWTA I + G + F EM ++ ++ N
Sbjct: 281 DMYSRINRVEKCMQLFDQMKRRNVYVWTAMINGYVQNGALEEALTLFHEMQAKDGVEPNR 340
Query: 219 YTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE 278
T SVL C + G+Q+H ++ L D + L+DMY KC L A RVF+
Sbjct: 341 VTLVSVLPICSSLAGLPG-GKQIHGYAIRKRLNFDASLSNALIDMYSKCGSLNYARRVFD 399
Query: 279 LIVDKKNIASWNAMLVGYIRNGLYVEATKFLY 310
+++ SW++++ GY +G EA FLY
Sbjct: 400 NGTFRRDAISWSSIISGYGLHGKGEEAV-FLY 430
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 73/296 (24%), Positives = 139/296 (46%), Gaps = 17/296 (5%)
Query: 51 RLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGH 110
+L+ + CG ++ +F+ + ++ W +I GYV + E +LF +M
Sbjct: 67 KLISAYAICGVPTASKLVFNSLEVKSVPLWNSLISGYVKNQENTESFSLFCQMCS----- 121
Query: 111 MLLVFPA-WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
V P + + + K C ++ GK +HGL K+G + + SL++ Y K
Sbjct: 122 -FGVLPDDYTLATLSKVCGEIGHLIAGKIIHGLSLKIGFVLDTVVANSLMSMYCKCGEFS 180
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHF---HQVFNDFKEMGRERIKKNSYTFSSVLK 226
+A +F ++ + W I G Q+ + K+M + K N++T SS+L
Sbjct: 181 EALKLFDEMPERSVGSWNVVIAGYSDSGDRNLNQQIVDLVKDMQIDGFKPNAFTVSSLLV 240
Query: 227 ACGGVDDDGNCGRQMHANIVKIGLE-----SDEYVQCGLVDMYGKCRLLRDAERVFELIV 281
C G + + GR++H IV+ L+ SD ++ L+DMY + + ++F+ +
Sbjct: 241 LCDGDIEKLDYGRELHGFIVRNELDLGCLGSDVHLGSCLIDMYSRINRVEKCMQLFDQM- 299
Query: 282 DKKNIASWNAMLVGYIRNGLYVEATKFLYLMKA-SGIQIQESLINDLRIACSSISA 336
++N+ W AM+ GY++NG EA + M+A G++ + + CSS++
Sbjct: 300 KRRNVYVWTAMINGYVQNGALEEALTLFHEMQAKDGVEPNRVTLVSVLPICSSLAG 355
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 97/208 (46%), Gaps = 6/208 (2%)
Query: 95 ECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISL 154
I FA + R L+ P ++ +L+ + + L +Q H +F + S+N +
Sbjct: 5 SAIKAFAPITSRYYHSATLLSPFQNLLNLLELSITNNCLTLTQQCHAQIFSMDFSQNPFI 64
Query: 155 TGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERI 214
LI+ Y + VF+ L+ + +W + I + + F+ F +M +
Sbjct: 65 ATKLISAYAICGVPTASKLVFNSLEVKSVPLWNSLISGYVKNQENTESFSLFCQMCSFGV 124
Query: 215 KKNSYTFSSVLKACGGVDDDGN--CGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRD 272
+ YT +++ K CG + G+ G+ +H +KIG D V L+ MY KC +
Sbjct: 125 LPDDYTLATLSKVCGEI---GHLIAGKIIHGLSLKIGFVLDTVVANSLMSMYCKCGEFSE 181
Query: 273 AERVFELIVDKKNIASWNAMLVGYIRNG 300
A ++F+ + ++++ SWN ++ GY +G
Sbjct: 182 ALKLFDEM-PERSVGSWNVVIAGYSDSG 208
Score = 44.3 bits (103), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 36 IRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLR-DFNSWAVMIVGYVDVADYQ 94
IRKR+N +L N L+ M+ CG L+ AR++FD R D SW+ +I GY +
Sbjct: 367 IRKRLNFDASLS--NALIDMYSKCGSLNYARRVFDNGTFRRDAISWSSIISGYGLHGKGE 424
Query: 95 ECITLFAEMMK 105
E + L+ +M++
Sbjct: 425 EAVFLYDKMLQ 435
>gi|410109997|gb|AFV61078.1| pentatricopeptide repeat-containing protein 81, partial [Lantana
montevidensis]
Length = 402
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/289 (27%), Positives = 136/289 (47%), Gaps = 10/289 (3%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMP-LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRK 107
LN + + CG + A+++FD RD +W M+ Y++ + +F EM++++
Sbjct: 94 LNATITAYAECGCIXDAKRVFDSSDGYRDLVTWNSMLAAYLEHNLEEYGFNIFLEMVRQR 153
Query: 108 KGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF-- 165
L A+ + V+ AC LGK H L+ K G ++ +L++ Y K
Sbjct: 154 -----LEMDAYTLSSVISACFEDTQQSLGKSXHALVIKKGLDEVTQISNALVSMYLKSNS 208
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
R +EDA +F ++ + V W + + G F+ + + + + YTF++VL
Sbjct: 209 RNVEDALKIFERINVKDLVSWNTILTGLSQNGLSENALRLFQNIXLDHLVTDQYTFAAVL 268
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
++C + GRQ+H +VK G E +EYV L+ MY KC ++ DA FE K+
Sbjct: 269 RSCSDLAT-LQLGRQIHVLVVKSGFEGNEYVASALIFMYSKCGIIEDAWESFE-SSHKET 326
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
+WN+++ Y ++G A YLM I++ ACS I
Sbjct: 327 SVTWNSIIFAYAQHGQGKIALDLFYLMTERRIKLDHVTFVAALTACSHI 375
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 76/255 (29%), Positives = 124/255 (48%), Gaps = 12/255 (4%)
Query: 59 CGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEM-MKRKKGHMLLVFPA 117
C +++ A ++F M R+ SW +I GY ++ + + C+TLF M M + P
Sbjct: 3 CRRVEDANKVFKYMRERNAVSWNALIGGYAEMGNLERCVTLFVGMEMDGVRVDDATFAP- 61
Query: 118 WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVF-S 176
+L + +L +Q+HG + K G ++ + I Y + C+ DA VF S
Sbjct: 62 -----LLTLLXDAESYDLXRQLHGKIMKXGLEYENTVLNATITAYAECGCIXDAKRVFDS 116
Query: 177 QLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGN 236
+ V W + + FN F EM R+R++ ++YT SSV+ AC D +
Sbjct: 117 SDGYRDLVTWNSMLAAYLEHNLEEYGFNIFLEMVRQRLEMDAYTLSSVISACFE-DTQQS 175
Query: 237 CGRQMHANIVKIGLESDEYVQCGLVDMYGK--CRLLRDAERVFELIVDKKNIASWNAMLV 294
G+ HA ++K GL+ + LV MY K R + DA ++FE I + K++ SWN +L
Sbjct: 176 LGKSXHALVIKKGLDEVTQISNALVSMYLKSNSRNVEDALKIFERI-NVKDLVSWNTILT 234
Query: 295 GYIRNGLYVEATKFL 309
G +NGL A +
Sbjct: 235 GLSQNGLSENALRLF 249
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 69/139 (49%), Gaps = 1/139 (0%)
Query: 163 GKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFS 222
K R +EDA+ VF ++ N V W A I G+ + F M + ++ + TF+
Sbjct: 1 AKCRRVEDANKVFKYMRERNAVSWNALIGGYAEMGNLERCVTLFVGMEMDGVRVDDATFA 60
Query: 223 SVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282
+L + + RQ+H I+K GLE + V + Y +C + DA+RVF+
Sbjct: 61 PLLTLLXDAES-YDLXRQLHGKIMKXGLEYENTVLNATITAYAECGCIXDAKRVFDSSDG 119
Query: 283 KKNIASWNAMLVGYIRNGL 301
+++ +WN+ML Y+ + L
Sbjct: 120 YRDLVTWNSMLAAYLEHNL 138
>gi|357164322|ref|XP_003580018.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Brachypodium distachyon]
Length = 593
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 88/285 (30%), Positives = 134/285 (47%), Gaps = 11/285 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ ++ CG+ AR++FDEM RD SW ++ +V + E + L G
Sbjct: 152 NALVTLYGVCGECGDARRVFDEMASRDVVSWTALVSAFVRGGRFAEALVLV--------G 203
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
M +V + CVL AC GK VHG + S + + ++++ Y K L+
Sbjct: 204 QMDVVPNEGTLACVLVACGRLGAARAGKAVHGWYLRRESDLKLIVGNAVLDMYVKCEKLD 263
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A VF +L + + WT I + + F EM + R+K + S+VL AC
Sbjct: 264 LARRVFDRLLVRDVISWTIMISGLVQCKLPSKALEVFNEMQKSRVKPDKVVLSTVLSACT 323
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ GR +H I + G+E D +V LVDMY KC L + +F + KN++SW
Sbjct: 324 SLGAL-ESGRWVHEYIERKGIEWDVHVGTSLVDMYAKCGCLETSLSIFRKM-PLKNLSSW 381
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQE-SLINDLRIACSS 333
NA++ G+ +G EA + M ASG+ E S I L C S
Sbjct: 382 NALINGFALHGHGREALEHFDRMVASGLAPNEVSFIIVLGACCHS 426
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 73/262 (27%), Positives = 126/262 (48%), Gaps = 13/262 (4%)
Query: 35 HIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQ 94
++R+ ++K L+ N +L M+V C +LD AR++FD + +RD SW +MI G V
Sbjct: 237 YLRRESDLK--LIVGNAVLDMYVKCEKLDLARRVFDRLLVRDVISWTIMISGLVQCKLPS 294
Query: 95 ECITLFAEMMKRKKGHMLLVFPAWIIVC-VLKACVCTMNMELGKQVHGLLFKLGSSRNIS 153
+ + +F EM K + V P +++ VL AC +E G+ VH + + G ++
Sbjct: 295 KALEVFNEMQKSR------VKPDKVVLSTVLSACTSLGALESGRWVHEYIERKGIEWDVH 348
Query: 154 LTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRER 213
+ SL++ Y K CLE + +F ++ N W A I GH + F M
Sbjct: 349 VGTSLVDMYAKCGCLETSLSIFRKMPLKNLSSWNALINGFALHGHGREALEHFDRMVASG 408
Query: 214 IKKNSYTFSSVLKAC--GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLR 271
+ N +F VL AC G+ +G + N K+ + Y +VD+ G+ L+
Sbjct: 409 LAPNEVSFIIVLGACCHSGLVQEGLQLFESMKNSYKLSPWEEHY--GSVVDLLGRAGLIH 466
Query: 272 DAERVFELIVDKKNIASWNAML 293
+A V + + + + +W A+L
Sbjct: 467 EAYSVTKAMPMRPAVFTWGALL 488
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 105/228 (46%), Gaps = 15/228 (6%)
Query: 117 AWIIVCVLKACVCTMNMEL------GKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
+ + LKAC G+QVH + K G + + +L+ YG D
Sbjct: 107 GYTLPATLKACARLGAGGDDGGLREGRQVHAVAEKGGFLGRLPVRNALVTLYGVCGECGD 166
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
A VF ++ + V WTA + R G F + +M + N T + VL ACG
Sbjct: 167 ARRVFDEMASRDVVSWTALVSAFVRGGRFAEALVLVGQMD---VVPNEGTLACVLVACGR 223
Query: 231 VDDDGNCGRQMHANIVKIGLESDEYVQCG--LVDMYGKCRLLRDAERVFELIVDKKNIAS 288
+ G+ +H ++ ESD + G ++DMY KC L A RVF+ ++ +++ S
Sbjct: 224 L-GAARAGKAVHGWYLR--RESDLKLIVGNAVLDMYVKCEKLDLARRVFDRLL-VRDVIS 279
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
W M+ G ++ L +A + M+ S ++ + +++ + AC+S+ A
Sbjct: 280 WTIMISGLVQCKLPSKALEVFNEMQKSRVKPDKVVLSTVLSACTSLGA 327
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 83/179 (46%), Gaps = 14/179 (7%)
Query: 170 DADFVFSQLK-RHNTVVWTAKIVNNCREGHFHQVFNDFKEM---GR-ERIKKNSYTFSSV 224
AD V + L+ R + + A I + G F F + GR E + + YT +
Sbjct: 54 PADAVHALLRLRASAHPFNALISHLTLSGEPSSAFRTFAALLAAGRGEPRRPDGYTLPAT 113
Query: 225 LKACGGVDDDGNC-----GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFEL 279
LKAC + G+ GRQ+HA K G V+ LV +YG C DA RVF+
Sbjct: 114 LKACARLGAGGDDGGLREGRQVHAVAEKGGFLGRLPVRNALVTLYGVCGECGDARRVFDE 173
Query: 280 IVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASK 338
+ +++ SW A++ ++R G + EA L L+ + E + + +AC + A++
Sbjct: 174 MAS-RDVVSWTALVSAFVRGGRFAEA---LVLVGQMDVVPNEGTLACVLVACGRLGAAR 228
>gi|302758830|ref|XP_002962838.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
gi|300169699|gb|EFJ36301.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
Length = 652
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 74/290 (25%), Positives = 133/290 (45%), Gaps = 9/290 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ ++ C + D A +F + ++ SW +M+ + + D+ C F M+ +
Sbjct: 14 NLLIDLYTKCDRFDDALAVFHGIQSKNVFSWTMMLAAFAENRDFDRCWLFFRGMLLQG-- 71
Query: 110 HMLLVFPAWIIVCV-LKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+ P + + + L AC + +G+ + + G + +L++ YGK
Sbjct: 72 ----INPGEVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSLYGKLGHC 127
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
DA VF ++ + V W+A + R GH + F++M + + N T S L AC
Sbjct: 128 TDAASVFLRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDAC 187
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
+ D G MH + G++S V LV++YGKC + A F IV+ KN+ +
Sbjct: 188 ASLGDL-RSGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAAEAFGQIVE-KNVVA 245
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASK 338
W+A+ Y RN +A + L+ M G+ + + AC++I+A K
Sbjct: 246 WSAISAAYARNDRNRDAIRVLHRMDLEGLAPNSTTFVSVLDACAAIAALK 295
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 79/284 (27%), Positives = 123/284 (43%), Gaps = 11/284 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ ++ G A +F M RD +W+ M+ Y +E + LF +M +
Sbjct: 117 LVSLYGKLGHCTDAASVFLRMSHRDVVAWSAMVAAYARNGHPREALGLFRQM------DL 170
Query: 112 LLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
V P + +V L AC ++ G +H + G + + +L+N YGK +E
Sbjct: 171 DGVAPNKVTLVSGLDACASLGDLRSGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEA 230
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
A F Q+ N V W+A R M E + NS TF SVL AC
Sbjct: 231 AAEAFGQIVEKNVVAWSAISAAYARNDRNRDAIRVLHRMDLEGLAPNSTTFVSVLDACAA 290
Query: 231 VDDDGNCGRQMHANI--VKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
+ GR++H I + GLESD YV LV+MY KC L A +F+ I ++
Sbjct: 291 IAALKQ-GRRIHERIHVLGGGLESDVYVLTALVNMYSKCGNLALAGNMFDKIA-HLDLVL 348
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
WN+++ ++G +A + M+ G+Q + ACS
Sbjct: 349 WNSLIATNAQHGQTEKALELFERMRLEGLQPTIITFTSVLFACS 392
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 87/192 (45%), Gaps = 4/192 (2%)
Query: 145 KLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFN 204
+LG RN L LI+ Y K +DA VF ++ N WT + F + +
Sbjct: 3 ELGWIRNRFLCNLLIDLYTKCDRFDDALAVFHGIQSKNVFSWTMMLAAFAENRDFDRCWL 62
Query: 205 DFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMY 264
F+ M + I S L AC + GR + I+ G+E + VQ LV +Y
Sbjct: 63 FFRGMLLQGINPGEVGISIFLSACTDAREI-TIGRSIQLAILGTGIEEESIVQTALVSLY 121
Query: 265 GKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQE-SL 323
GK DA VF L + +++ +W+AM+ Y RNG EA M G+ + +L
Sbjct: 122 GKLGHCTDAASVF-LRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTL 180
Query: 324 INDLRIACSSIS 335
++ L AC+S+
Sbjct: 181 VSGLD-ACASLG 191
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/258 (22%), Positives = 117/258 (45%), Gaps = 13/258 (5%)
Query: 41 NIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLF 100
I+ ++ L+ ++ CG+++ A + F ++ ++ +W+ + Y ++ I +
Sbjct: 207 GIQSGVVVGTALVNLYGKCGRIEAAAEAFGQIVEKNVVAWSAISAAYARNDRNRDAIRVL 266
Query: 101 AEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSS--RNISLTGSL 158
M L + V VL AC ++ G+++H + LG ++ + +L
Sbjct: 267 HRMDLEG-----LAPNSTTFVSVLDACAAIAALKQGRRIHERIHVLGGGLESDVYVLTAL 321
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
+N Y K L A +F ++ + V+W + I N + G + F+ M E ++
Sbjct: 322 VNMYSKCGNLALAGNMFDKIAHLDLVLWNSLIATNAQHGQTEKALELFERMRLEGLQPTI 381
Query: 219 YTFSSVLKAC--GGVDDDGNCGRQMHANIVKIGLESD-EYVQCGLVDMYGKCRLLRDAER 275
TF+SVL AC G+ D G + + I G+ + E+ C +VD+ G+ + D+E
Sbjct: 382 ITFTSVLFACSHAGMLDQGR--KHFVSFIGDHGIFPEAEHFGC-MVDLLGRAGWIVDSED 438
Query: 276 VFELIVDKKNIASWNAML 293
+ + + + +W A L
Sbjct: 439 LLLHMPFEPHPVAWMAFL 456
>gi|255559826|ref|XP_002520932.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539898|gb|EEF41477.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 757
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 86/284 (30%), Positives = 138/284 (48%), Gaps = 9/284 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L M+ +D AR LFDEMP +D SW+ MI GYV + Q + +F +M+ +
Sbjct: 204 NSFLCMYADV-DMDCARILFDEMPEKDVISWSAMIGGYVQYLEDQIGLQIFQKMLSTSR- 261
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ I+V VLKAC ++N+ +G+ VHGL G ++ + SLI+ Y K +
Sbjct: 262 ---ITPDGVILVSVLKACANSVNITMGRLVHGLTICRGLDSDLFVKNSLIDMYSKCKDAG 318
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A VFS++ R N V W + + + + M E I+ + T + L+ C
Sbjct: 319 SAFEVFSEMPRRNNVSWNSLLSGLILNKKYSEALLLVYSMRTEGIEADEVTLVNCLQICK 378
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+C + +H ++ G ES+E V L+D Y KC L+ A VF ++++ W
Sbjct: 379 YFAHPYHC-KAVHCATIRRGCESNEIVLNSLIDAYAKCNLIELAWEVFSR-TRRRDVVLW 436
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESL-INDLRIACS 332
+ M+ G+ G EA M GI++ ++ I +L ACS
Sbjct: 437 STMIAGFAHCGKPDEAIAVFQKMN-EGIEVPNAVTIINLLQACS 479
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 91/290 (31%), Positives = 143/290 (49%), Gaps = 26/290 (8%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N +L ++ CG+LDTA +FD M RD SW V+I G +D E + F + R G
Sbjct: 103 NSILNFYIKCGELDTAVSVFDSMRSRDSVSWNVLIHGCLDYGALVEGLWQF--INARVAG 160
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ +V +++AC + G Q+HG L + G + S+ S + Y ++
Sbjct: 161 FEPNIS---TLVLLVQACRSLRAKQEGLQLHGYLIQSGLWASWSVQNSFLCMYADVD-MD 216
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFND------FKEM-GRERIKKNSYTFS 222
A +F ++ + + W+A I G + Q D F++M RI +
Sbjct: 217 CARILFDEMPEKDVISWSAMI------GGYVQYLEDQIGLQIFQKMLSTSRITPDGVILV 270
Query: 223 SVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282
SVLKAC + GR +H + GL+SD +V+ L+DMY KC +DA FE+ +
Sbjct: 271 SVLKACAN-SVNITMGRLVHGLTICRGLDSDLFVKNSLIDMYSKC---KDAGSAFEVFSE 326
Query: 283 --KKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQE-SLINDLRI 329
++N SWN++L G I N Y EA +Y M+ GI+ E +L+N L+I
Sbjct: 327 MPRRNNVSWNSLLSGLILNKKYSEALLLVYSMRTEGIEADEVTLVNCLQI 376
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 81/287 (28%), Positives = 128/287 (44%), Gaps = 7/287 (2%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L N L+ M+ C +A ++F EMP R+ SW ++ G + Y E + L M
Sbjct: 301 LFVKNSLIDMYSKCKDAGSAFEVFSEMPRRNNVSWNSLLSGLILNKKYSEALLLVYSM-- 358
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
R +G + +V L+ C + K VH + G N + SLI+ Y K
Sbjct: 359 RTEG---IEADEVTLVNCLQICKYFAHPYHCKAVHCATIRRGCESNEIVLNSLIDAYAKC 415
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
+E A VFS+ +R + V+W+ I G + F++M N+ T ++L
Sbjct: 416 NLIELAWEVFSRTRRRDVVLWSTMIAGFAHCGKPDEAIAVFQKMNEGIEVPNAVTIINLL 475
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
+AC V + H ++ GL ++ V +VDMY KC + + + F I +KN
Sbjct: 476 QAC-SVSAELKRSMWAHGAAIRRGLAAEVAVGTAIVDMYSKCGEIEASRKAFNQI-PQKN 533
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
I +W+ M+ Y NGL EA L MK+ I+ + ACS
Sbjct: 534 IITWSTMIAAYGMNGLAHEALALLAQMKSHEIKPNALTYLSVLTACS 580
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 117/253 (46%), Gaps = 15/253 (5%)
Query: 47 LFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR 106
+ LN L+ + C ++ A ++F RD W+ MI G+ E I +F +M
Sbjct: 403 IVLNSLIDAYAKCNLIELAWEVFSRTRRRDVVLWSTMIAGFAHCGKPDEAIAVFQKM--- 459
Query: 107 KKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166
+ V A I+ +L+AC + ++ HG + G + +++ ++++ Y K
Sbjct: 460 --NEGIEVPNAVTIINLLQACSVSAELKRSMWAHGAAIRRGLAAEVAVGTAIVDMYSKCG 517
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
+E + F+Q+ + N + W+ I G H+ +M IK N+ T+ SVL
Sbjct: 518 EIEASRKAFNQIPQKNIITWSTMIAAYGMNGLAHEALALLAQMKSHEIKPNALTYLSVLT 577
Query: 227 AC--GGVDDDG-NCGRQMHANIVKIGLESD-EYVQCGLVDMYGKCRLLRDAERVFELIVD 282
AC GG+ + G + + M I G++ + E+ C +VDM + L DA + ++ +
Sbjct: 578 ACSHGGLVEMGLSVFKSM---IQDHGVDPEFEHYSC-MVDMLSRAGKLDDAMELIRMMPE 633
Query: 283 --KKNIASWNAML 293
+ + W A+L
Sbjct: 634 TFRAGASVWGALL 646
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 109/254 (42%), Gaps = 23/254 (9%)
Query: 79 SWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLL---VFPAWIIVCVLKACVCTMNMEL 135
SW + I + E I+ + E+ H LL +FP VLKAC ++
Sbjct: 29 SWTLRIKELSSNEKWHEVISQYYEITNAGISHHLLDVTLFPP-----VLKACSYLSYID- 82
Query: 136 GKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCR 195
GK +H L K S+ S++NFY K L+ A VF ++ ++V W I
Sbjct: 83 GKCLHACLIKTAFDSFTSIGNSILNFYIKCGELDTAVSVFDSMRSRDSVSWNVLIHGCLD 142
Query: 196 EGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEY 255
G + F + N T +++AC + G Q+H +++ GL +
Sbjct: 143 YGALVEGLWQFINARVAGFEPNISTLVLLVQACRSLRAKQE-GLQLHGYLIQSGLWASWS 201
Query: 256 VQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKAS 315
VQ + MY + D R+ + +K++ SW+AM+ GY++ YL
Sbjct: 202 VQNSFLCMYADVDM--DCARILFDEMPEKDVISWSAMIGGYVQ-----------YLEDQI 248
Query: 316 GIQIQESLINDLRI 329
G+QI + +++ RI
Sbjct: 249 GLQIFQKMLSTSRI 262
>gi|410110009|gb|AFV61084.1| pentatricopeptide repeat-containing protein 81, partial [Lippia
diamantinensis]
Length = 372
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/274 (27%), Positives = 135/274 (49%), Gaps = 10/274 (3%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDE-MPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRK 107
LN + + CG ++ A+++FD RD +W M+ Y++ + +F EM+K++
Sbjct: 94 LNATITAYAECGCIEDAKRVFDSSHGYRDLVTWNSMLAAYLEHNLEEYGFNIFLEMVKQR 153
Query: 108 KGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF-- 165
L A+ + V+ AC LGK +HG + K G ++ +L++ Y K
Sbjct: 154 -----LEIDAYTLSSVISACXEDTQQSLGKSLHGFVIKXGLDHVTQISNALVSMYLKSNS 208
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
R +EDA +F + + V W + + G F+ + + + + YTF++VL
Sbjct: 209 RNVEDALKIFEHINIKDLVSWNTILTGLSQNGLSENALRLFQNIHLDHLLTDQYTFAAVL 268
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
++C + + GRQ+H +VK G E +EYV L+ MY KC ++ DA FE + K+
Sbjct: 269 RSCSDLXT-LHLGRQIHVLVVKSGFEGNEYVASALIFMYSKCGIIEDAWESFESSL-KET 326
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQI 319
+WN+++ Y ++G A +LM I++
Sbjct: 327 SVTWNSIIFAYAQHGQGKIALDLFHLMTERRIKL 360
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/255 (29%), Positives = 127/255 (49%), Gaps = 12/255 (4%)
Query: 59 CGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEM-MKRKKGHMLLVFPA 117
C +++ A ++F M R+ SW +I GY ++ D + C+TLF M M+ + P
Sbjct: 3 CRRVEDANKVFKYMXERNAVSWNALIGGYAEMGDLERCVTLFVGMEMEGVRVDDATFAPL 62
Query: 118 WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVF-S 176
++ K+ +L +Q+HG + + G ++ + I Y + C+EDA VF S
Sbjct: 63 LPLLNDAKS------YDLTRQLHGKIMRRGLEYENTVLNATITAYAECGCIEDAKRVFDS 116
Query: 177 QLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGN 236
+ V W + + FN F EM ++R++ ++YT SSV+ AC D +
Sbjct: 117 SHGYRDLVTWNSMLAAYLEHNLEEYGFNIFLEMVKQRLEIDAYTLSSVISACXE-DTQQS 175
Query: 237 CGRQMHANIVKIGLESDEYVQCGLVDMYGK--CRLLRDAERVFELIVDKKNIASWNAMLV 294
G+ +H ++K GL+ + LV MY K R + DA ++FE I + K++ SWN +L
Sbjct: 176 LGKSLHGFVIKXGLDHVTQISNALVSMYLKSNSRNVEDALKIFEHI-NIKDLVSWNTILT 234
Query: 295 GYIRNGLYVEATKFL 309
G +NGL A +
Sbjct: 235 GLSQNGLSENALRLF 249
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 66/139 (47%), Gaps = 1/139 (0%)
Query: 163 GKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFS 222
K R +EDA+ VF + N V W A I G + F M E ++ + TF+
Sbjct: 1 AKCRRVEDANKVFKYMXERNAVSWNALIGGYAEMGDLERCVTLFVGMEMEGVRVDDATFA 60
Query: 223 SVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282
+L + RQ+H I++ GLE + V + Y +C + DA+RVF+
Sbjct: 61 PLLPLLNDAKS-YDLTRQLHGKIMRRGLEYENTVLNATITAYAECGCIEDAKRVFDSSHG 119
Query: 283 KKNIASWNAMLVGYIRNGL 301
+++ +WN+ML Y+ + L
Sbjct: 120 YRDLVTWNSMLAAYLEHNL 138
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 80/181 (44%), Gaps = 7/181 (3%)
Query: 50 NRLLLMHVSCGQ--LDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRK 107
N L+ M++ ++ A ++F+ + ++D SW ++ G + + LF +
Sbjct: 197 NALVSMYLKSNSRNVEDALKIFEHINIKDLVSWNTILTGLSQNGLSENALRLFQNI---H 253
Query: 108 KGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
H+L + VL++C + LG+Q+H L+ K G N + +LI Y K
Sbjct: 254 LDHLLT--DQYTFAAVLRSCSDLXTLHLGRQIHVLVVKSGFEGNEYVASALIFMYSKCGI 311
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
+EDA F + +V W + I + G + F M RIK + TF + L A
Sbjct: 312 IEDAWESFESSLKETSVTWNSIIFAYAQHGQGKIALDLFHLMTERRIKLDHVTFVAALTA 371
Query: 228 C 228
C
Sbjct: 372 C 372
>gi|302797883|ref|XP_002980702.1| hypothetical protein SELMODRAFT_113181 [Selaginella moellendorffii]
gi|300151708|gb|EFJ18353.1| hypothetical protein SELMODRAFT_113181 [Selaginella moellendorffii]
Length = 1108
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/316 (26%), Positives = 146/316 (46%), Gaps = 22/316 (6%)
Query: 13 YTCLIKECTFQKDSAG---AFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLF 69
YT L++ C D A A EL+ + ++ L N L+ M+V CG L+ A +F
Sbjct: 28 YTALLQSCVDSNDLAKGKRAHELIAN----AGLEQHLFLGNCLINMYVRCGSLEEAHAIF 83
Query: 70 DEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVC 129
+M R+ SW +I + LF M+ ++ +V +L AC
Sbjct: 84 SKMEERNVVSWTALISANAQSGAFARAFALFRTMLLESSA----APNSYTLVAMLNACAN 139
Query: 130 TMNMELGKQVHGLLFKLG---SSRNISLTG-SLINFYGKFRCLEDADFVFSQLKRHNTVV 185
+ ++ +G+ +H ++++LG S +L G ++IN Y K EDA VF + + V
Sbjct: 140 SRDLAIGRSIHAMIWELGLERESTTATLVGNAMINMYAKCGSPEDAIAVFLTIPEKDVVS 199
Query: 186 WTAKIVNNCREGHFHQ-VFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHAN 244
WTA +E F+ F+EM + + N TF + L AC + D G +H+
Sbjct: 200 WTAMAGAYAQERRFYPDALRIFREMLLQPLAPNVITFITALGACTSLRD----GTWLHSL 255
Query: 245 IVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK--NIASWNAMLVGYIRNGLY 302
+ + GL D L++MYGKC A VF+ + ++ ++ SWNAM+ + G +
Sbjct: 256 LHEAGLGFDPLAGNALINMYGKCGDWEGAYGVFKAMASRQELDLVSWNAMISASVEAGRH 315
Query: 303 VEATKFLYLMKASGIQ 318
+A ++ G++
Sbjct: 316 GDAMAIFRRLRLEGMR 331
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 78/289 (26%), Positives = 128/289 (44%), Gaps = 25/289 (8%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ MH C +L+ AR +FDEM D SW M+ + D++E LF M +
Sbjct: 578 LISMHGRCRELEQARSVFDEMDHGDVVSWTAMVSATAENRDFKEVHHLFRRM------QL 631
Query: 112 LLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
V P + + L C+ + + LGK +H + ++G +I++ +L+N Y +
Sbjct: 632 EGVIPDKFTLATTLDTCLDSTTLGLGKIIHACVTEIGLEADIAVENALLNMYSNCGDWRE 691
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
A F +K + V W + G + F+ M E +K + TFS+ L GG
Sbjct: 692 ALSFFETMKARDLVSWNIMSAAYAQAGLAKEAVLLFRHMQLEGVKPDKLTFSTTLNVSGG 751
Query: 231 ---VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
V D G+ H + GL+SD V GLV +Y KC L +A +F +
Sbjct: 752 SALVSD----GKLFHGLAAESGLDSDVSVATGLVKLYAKCGKLDEAISLF------RGAC 801
Query: 288 SW-----NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
W NA++ ++G EA K + M+ G++ + + + AC
Sbjct: 802 QWTVVLLNAIIGALAQHGFSEEAVKMFWKMQQEGVRPDVATLVSIISAC 850
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 104/248 (41%), Gaps = 12/248 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVAD-YQECITLFAEMMKRKK 108
N ++ M+ CG + A +F +P +D SW M Y Y + + +F EM+ +
Sbjct: 170 NAMINMYAKCGSPEDAIAVFLTIPEKDVVSWTAMAGAYAQERRFYPDALRIFREMLLQPL 229
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
++ F + L AC ++ G +H LL + G + +LIN YGK
Sbjct: 230 APNVITF-----ITALGACT---SLRDGTWLHSLLHEAGLGFDPLAGNALINMYGKCGDW 281
Query: 169 EDADFVFSQLKRH---NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
E A VF + + V W A I + G F+ + E ++ NS T ++L
Sbjct: 282 EGAYGVFKAMASRQELDLVSWNAMISASVEAGRHGDAMAIFRRLRLEGMRPNSVTLITIL 341
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
A D R+ H I + G D V ++ MY KC A VF I K +
Sbjct: 342 NALAASGVDFGAARKFHGRIWESGYLRDVVVGNAIISMYAKCGFFSAAWTVFRRIRWKCD 401
Query: 286 IASWNAML 293
+ SWN ML
Sbjct: 402 VISWNTML 409
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 81/327 (24%), Positives = 148/327 (45%), Gaps = 27/327 (8%)
Query: 4 LCLPITTDMYTCL--IKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQ 61
L P+ ++ T + + CT +D LL+ + P L N L+ M+ CG
Sbjct: 225 LLQPLAPNVITFITALGACTSLRDGTWLHSLLHE--AGLGFDP--LAGNALINMYGKCGD 280
Query: 62 LDTARQLFDEMPLR---DFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAW 118
+ A +F M R D SW MI V+ + + + +F + R +G + P
Sbjct: 281 WEGAYGVFKAMASRQELDLVSWNAMISASVEAGRHGDAMAIFRRL--RLEG----MRPNS 334
Query: 119 IIVCVLKACVCTMNMELG--KQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFS 176
+ + + + ++ G ++ HG +++ G R++ + ++I+ Y K A VF
Sbjct: 335 VTLITILNALAASGVDFGAARKFHGRIWESGYLRDVVVGNAIISMYAKCGFFSAAWTVFR 394
Query: 177 QLK-RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDG 235
+++ + + + W + + F +V N F M I N +F ++L AC +
Sbjct: 395 RIRWKCDVISWNTMLGASEDRKSFGKVVNTFHHMLLAGIDPNKVSFIAILNACSN-SEAL 453
Query: 236 NCGRQMHANIVKIGLESDEYVQCG----LVDMYGKCRLLRDAERVF-ELIVDKKNIASWN 290
+ GR++H+ I+ +YV+ LV MYGKC + +AE VF E+ + +++ +WN
Sbjct: 454 DFGRKIHSLILT---RRRDYVESSVATMLVSMYGKCGSIAEAELVFKEMPLPSRSLVTWN 510
Query: 291 AMLVGYIRNGLYVEATKFLYLMKASGI 317
ML Y +N EA L M G+
Sbjct: 511 VMLGAYAQNDRSKEAFGALMEMLQGGV 537
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 65/281 (23%), Positives = 125/281 (44%), Gaps = 33/281 (11%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLR-DFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
N ++ M+ CG A +F + + D SW M+ D + + + F
Sbjct: 374 NAIISMYAKCGFFSAAWTVFRRIRWKCDVISWNTMLGASEDRKSFGKVVNTFH------- 426
Query: 109 GHMLL--VFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNI---SLTGSLINFY 162
HMLL + P + + +L AC + ++ G+++H L+ L R+ S+ L++ Y
Sbjct: 427 -HMLLAGIDPNKVSFIAILNACSNSEALDFGRKIHSLI--LTRRRDYVESSVATMLVSMY 483
Query: 163 GKFRCLEDADFVFSQ--LKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYT 220
GK + +A+ VF + L + V W + + + F EM + + ++ +
Sbjct: 484 GKCGSIAEAELVFKEMPLPSRSLVTWNVMLGAYAQNDRSKEAFGALMEMLQGGVLPDALS 543
Query: 221 FSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEY----VQCGLVDMYGKCRLLRDAERV 276
F+SVL +C C ++ A ++++ + Y ++ L+ M+G+CR L A V
Sbjct: 544 FTSVLSSC-------YCSQE--AQVLRMCILESGYRSACLETALISMHGRCRELEQARSV 594
Query: 277 FELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGI 317
F+ + D ++ SW AM+ N + E M+ G+
Sbjct: 595 FDEM-DHGDVVSWTAMVSATAENRDFKEVHHLFRRMQLEGV 634
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 73/305 (23%), Positives = 119/305 (39%), Gaps = 39/305 (12%)
Query: 2 DNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQ 61
D L T D TCL + G ++++ + ++ + N LL M+ +CG
Sbjct: 637 DKFTLATTLD--TCL------DSTTLGLGKIIHACVTEIGLEADIAVENALLNMYSNCGD 688
Query: 62 LDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIV 121
A F+ M RD SW +M Y +E + LF M L F + V
Sbjct: 689 WREALSFFETMKARDLVSWNIMSAAYAQAGLAKEAVLLFRHMQLEGVKPDKLTFSTTLNV 748
Query: 122 CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH 181
A V GK HGL + G ++S+ L+ Y K L++A +F +
Sbjct: 749 SGGSALVSD-----GKLFHGLAAESGLDSDVSVATGLVKLYAKCGKLDEAISLFRGACQW 803
Query: 182 NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQM 241
V+ A I + G + F +M +E ++ + T S++ ACG
Sbjct: 804 TVVLLNAIIGALAQHGFSEEAVKMFWKMQQEGVRPDVATLVSIISACG------------ 851
Query: 242 HANIVKIGLESD-------------EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
HA +V+ G S E+ C VD+ G+ L AE++ + + N
Sbjct: 852 HAGMVEEGCSSFLTMKEYFGISPTLEHYAC-FVDLLGRAGQLEHAEQIIRKMPFEDNTLV 910
Query: 289 WNAML 293
W ++L
Sbjct: 911 WTSLL 915
>gi|302142722|emb|CBI19925.3| unnamed protein product [Vitis vinifera]
Length = 581
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/314 (27%), Positives = 151/314 (48%), Gaps = 18/314 (5%)
Query: 28 GAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGY 87
G + NH+ + +P L+ L+ + SCG+++ AR++F W MI GY
Sbjct: 258 GDIDSANHVLNLMK-EPDAFSLSALISGYASCGRMNDARRIFCLKSNACVVLWNSMISGY 316
Query: 88 VDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLG 147
V + E + LF M ++ F + VL AC ++ G QVH ++K+G
Sbjct: 317 VANNEALEALELFNNMRRKGVQEDYSTFAS-----VLSACSTLGIIDQGIQVHAHVYKVG 371
Query: 148 SSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVV----------WTAKIVNNCREG 197
+ +I + +L++ Y K R +DA +FS L+ ++T++ W + IV +
Sbjct: 372 FTNDIIIDSALVDMYSKCRRPDDACKLFSDLQAYDTILLNSMITVLISWNSMIVGFSQNA 431
Query: 198 HFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQ 257
+ + F EM + ++ + ++ + V+ AC + G Q+ A IGLE D+ +
Sbjct: 432 CPIEALDLFCEMNKLGLRMDKFSLAGVISACASISSL-ELGEQIFARATIIGLEFDQIIS 490
Query: 258 CGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGI 317
LVD Y KC L+ ++F+ ++ K + WN+ML+GY NG +EA M++ G+
Sbjct: 491 TSLVDFYCKCGLVEHGRKLFDRMM-KSDEVPWNSMLMGYATNGHGIEALNVFDQMRSVGV 549
Query: 318 QIQESLINDLRIAC 331
Q + + AC
Sbjct: 550 QPTDITFVGVLSAC 563
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 86/323 (26%), Positives = 146/323 (45%), Gaps = 55/323 (17%)
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEM----MKRKKGHMLLVF 115
G L+ AR+LF+EMP ++ +W MI GY +E + LF ++ ++R G
Sbjct: 154 GNLEVARRLFNEMPWKNGIAWNSMIHGYACNGRPKEAVGLFKDLSLNPLERFCGD----- 208
Query: 116 PAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVF 175
+++ V+ AC ++ GKQ+H + + L SL+N YGK ++ A+ V
Sbjct: 209 -TFVLATVVGACTNLGALDCGKQIHARIVVDEVEFDSVLGSSLVNLYGKCGDIDSANHVL 267
Query: 176 SQLKRHNT-------------------------------VVWTAKIVNNCREGHFHQVFN 204
+ +K + V+W + I +
Sbjct: 268 NLMKEPDAFSLSALISGYASCGRMNDARRIFCLKSNACVVLWNSMISGYVANNEALEALE 327
Query: 205 DFKEMGRERIKKNSYTFSSVLKACG--GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVD 262
F M R+ ++++ TF+SVL AC G+ D G Q+HA++ K+G +D + LVD
Sbjct: 328 LFNNMRRKGVQEDYSTFASVLSACSTLGIIDQG---IQVHAHVYKVGFTNDIIIDSALVD 384
Query: 263 MYGKCRLLRDAERVFELIVDKKNI---------ASWNAMLVGYIRNGLYVEATKFLYLMK 313
MY KCR DA ++F + I SWN+M+VG+ +N +EA M
Sbjct: 385 MYSKCRRPDDACKLFSDLQAYDTILLNSMITVLISWNSMIVGFSQNACPIEALDLFCEMN 444
Query: 314 ASGIQIQESLINDLRIACSSISA 336
G+++ + + + AC+SIS+
Sbjct: 445 KLGLRMDKFSLAGVISACASISS 467
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 80/321 (24%), Positives = 127/321 (39%), Gaps = 84/321 (26%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
NRLL M+ C + A+QLF+EMP R+ SW MI GY+ + + LF M +
Sbjct: 82 NRLLQMYSRCNSMREAQQLFEEMPKRNCFSWNTMIEGYLKSGSKGKSLELFDSMPHKD-- 139
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
S N+ ++G + K LE
Sbjct: 140 -------------------------------------AFSWNVVISG-----FAKEGNLE 157
Query: 170 DADFVFSQLKRHNTVVWTAKIVN---NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
A +F+++ N + W + I N R +F D ER +++ ++V+
Sbjct: 158 VARRLFNEMPWKNGIAWNSMIHGYACNGRPKEAVGLFKDLSLNPLERFCGDTFVLATVVG 217
Query: 227 AC---GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD- 282
AC G +D CG+Q+HA IV +E D + LV++YGKC + A V L+ +
Sbjct: 218 ACTNLGALD----CGKQIHARIVVDEVEFDSVLGSSLVNLYGKCGDIDSANHVLNLMKEP 273
Query: 283 ---------------------------KKN--IASWNAMLVGYIRNGLYVEATKFLYLMK 313
K N + WN+M+ GY+ N +EA + M+
Sbjct: 274 DAFSLSALISGYASCGRMNDARRIFCLKSNACVVLWNSMISGYVANNEALEALELFNNMR 333
Query: 314 ASGIQIQESLINDLRIACSSI 334
G+Q S + ACS++
Sbjct: 334 RKGVQEDYSTFASVLSACSTL 354
Score = 44.3 bits (103), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 238 GRQMHANIVKIG-LESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGY 296
GR +H +K G L S + L+ MY +C +R+A+++FE + K+N SWN M+ GY
Sbjct: 61 GRLLHILFLKSGVLHSVLSIGNRLLQMYSRCNSMREAQQLFEEM-PKRNCFSWNTMIEGY 119
Query: 297 IRNG 300
+++G
Sbjct: 120 LKSG 123
>gi|125534384|gb|EAY80932.1| hypothetical protein OsI_36110 [Oryza sativa Indica Group]
Length = 770
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/294 (27%), Positives = 144/294 (48%), Gaps = 13/294 (4%)
Query: 8 ITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQ 67
+ + MY L+ C + S GA ++ + + L+ ++ CG AR+
Sbjct: 76 VQSAMYVPLLHRCV-EMGSLGAARAVHGHMAKTGAGADMFVATSLVNAYMRCGAARDARR 134
Query: 68 LFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPA-WIIVCVLKA 126
LFD MP R+ +W ++ GY + + +F EM++ + +P+ + + L A
Sbjct: 135 LFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGR------YPSHYTLGATLNA 188
Query: 127 CVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVW 186
C+ + +++LGKQVHG K G+ S+ SL + Y K L+ A F ++ N + W
Sbjct: 189 CLASCDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITW 248
Query: 187 TAKIVNNCREGH--FHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHAN 244
T +++ C E + F +M + + N +T +SV+ C G D N G+Q+ A
Sbjct: 249 TT-MISACAEDEECVELGLSLFIDMLMDGVMPNEFTLTSVMSLC-GTRLDLNLGKQVQAF 306
Query: 245 IVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIR 298
KIG E++ V+ + +Y + +A R+FE + D +I +WNAM+ GY +
Sbjct: 307 SFKIGCETNLPVKNSTMYLYLRKGETDEAMRLFEQMED-ASIITWNAMISGYAQ 359
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 82/299 (27%), Positives = 146/299 (48%), Gaps = 27/299 (9%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECI----TLFAEMMK 105
N L ++ G LD+A + F +P ++ +W MI A+ +EC+ +LF +M+
Sbjct: 218 NSLCSLYAKLGSLDSALRAFWRIPEKNVITWTTMISA---CAEDEECVELGLSLFIDML- 273
Query: 106 RKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
M V P + + V+ C +++ LGKQV FK+G N+ + S + Y +
Sbjct: 274 -----MDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFKIGCETNLPVKNSTMYLYLR 328
Query: 165 FRCLEDADFVFSQLKRHNTVVWTA------KIVNNCRE-----GHFHQVFNDFKEMGRER 213
++A +F Q++ + + W A +I+++ ++ Q F+++ R
Sbjct: 329 KGETDEAMRLFEQMEDASIITWNAMISGYAQIMDSAKDDLQARSRGFQALTIFRDLKRSV 388
Query: 214 IKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDA 273
+K + +TFSS+L C + G Q+HA +K G SD V LV+MY KC ++DA
Sbjct: 389 MKPDLFTFSSILSVCSAMMALEQ-GEQIHAQTIKSGFLSDVVVNSALVNMYNKCGCIQDA 447
Query: 274 ERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+ F L + + +W +M+ GY ++G EA + M+ +G++ E L ACS
Sbjct: 448 NKAF-LEMPTRTFVTWTSMISGYSQHGQPQEAIQLFEEMRLAGVRPNEITFVSLLSACS 505
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 74/304 (24%), Positives = 133/304 (43%), Gaps = 25/304 (8%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQ---- 94
++ + L N + +++ G+ D A +LF++M +W MI GY + D
Sbjct: 309 KIGCETNLPVKNSTMYLYLRKGETDEAMRLFEQMEDASIITWNAMISGYAQIMDSAKDDL 368
Query: 95 -------ECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLG 147
+ +T+F ++ + L F + +L C M +E G+Q+H K G
Sbjct: 369 QARSRGFQALTIFRDLKRSVMKPDLFTFSS-----ILSVCSAMMALEQGEQIHAQTIKSG 423
Query: 148 SSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFK 207
++ + +L+N Y K C++DA+ F ++ V WT+ I + G + F+
Sbjct: 424 FLSDVVVNSALVNMYNKCGCIQDANKAFLEMPTRTFVTWTSMISGYSQHGQPQEAIQLFE 483
Query: 208 EMGRERIKKNSYTFSSVLKAC--GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYG 265
EM ++ N TF S+L AC G+ ++ M I D Y C ++DM+
Sbjct: 484 EMRLAGVRPNEITFVSLLSACSYAGLVEEAEHYFDMMKKEYCIEPVVDHY-GC-MIDMFV 541
Query: 266 KCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG----LYVEATKFLYLMKASGIQIQE 321
+ + DA + + N A W++++ G +G + A K L L K GI+
Sbjct: 542 RLGRVEDAFSFIKRTGFEPNEAIWSSLVAGCRSHGNMELAFYAADKLLEL-KPKGIETYI 600
Query: 322 SLIN 325
L+N
Sbjct: 601 LLLN 604
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 236 NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
R +H ++ K G +D +V LV+ Y +C RDA R+F+ + ++ N+ +W A++ G
Sbjct: 95 GAARAVHGHMAKTGAGADMFVATSLVNAYMRCGAARDARRLFDGMPER-NVVTWTALVTG 153
Query: 296 YIRN 299
Y N
Sbjct: 154 YTLN 157
>gi|356518183|ref|XP_003527761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
[Glycine max]
Length = 1582
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/281 (27%), Positives = 136/281 (48%), Gaps = 7/281 (2%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ ++ G+++ A LF D SW M+ GY+ D+ + + L+ M + +
Sbjct: 1049 LIDVYSKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQESGERAN 1108
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+ + KA + ++ GKQ+ ++ K G + ++ + +++ Y K +E A
Sbjct: 1109 QIT-----LANAAKAAGGLVGLKQGKQIQAVVVKRGFNLDLFVISGVLDMYLKCGEMESA 1163
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
+F+++ + V WT I G + M +++ + YTF++++KAC +
Sbjct: 1164 RRIFNEIPSPDDVAWTTMISGCVENGQEEHALFTYHHMRLSKVQPDEYTFATLVKACSLL 1223
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
GRQ+HAN VK+ D +V LVDMY KC + DA +F+ + IASWNA
Sbjct: 1224 TALEQ-GRQIHANTVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKR-TNTSRIASWNA 1281
Query: 292 MLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
M+VG ++G EA +F MK+ G+ + ACS
Sbjct: 1282 MIVGLAQHGNAEEALQFFEEMKSRGVTPDRVTFIGVLSACS 1322
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 81/289 (28%), Positives = 134/289 (46%), Gaps = 10/289 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQEC-ITLFAEMMKRKK 108
N L+ M+V G + AR +F +M D SW MI G ++ +EC + +F ++++
Sbjct: 945 NCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCA-LSGLEECSVGMFVDLLRGG- 1002
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNM-ELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
L+ + + VL+AC L Q+H K G + ++ +LI+ Y K
Sbjct: 1003 ----LLPDQFTVASVLRACSSLGGGCHLATQIHACAMKAGVVLDSFVSTTLIDVYSKSGK 1058
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
+E+A+F+F + W A + G F + + M + N T ++ KA
Sbjct: 1059 MEEAEFLFVNQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQESGERANQITLANAAKA 1118
Query: 228 CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
GG+ G+Q+ A +VK G D +V G++DMY KC + A R+F I ++A
Sbjct: 1119 AGGLVGLKQ-GKQIQAVVVKRGFNLDLFVISGVLDMYLKCGEMESARRIFNEIPSPDDVA 1177
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
W M+ G + NG A + M+ S +Q E L ACS ++A
Sbjct: 1178 -WTTMISGCVENGQEEHALFTYHHMRLSKVQPDEYTFATLVKACSLLTA 1225
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/257 (28%), Positives = 127/257 (49%), Gaps = 9/257 (3%)
Query: 76 DFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN-ME 134
D +W + ++ + E + F +M+ + L F V+ + V +N +E
Sbjct: 870 DVIAWNKTLSWFLQRGETWEAVDCFVDMINSRVACDGLTF------VVMLSVVAGLNCLE 923
Query: 135 LGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNC 194
LGKQ+HG++ + G + +S+ LIN Y K + A VF Q+ + V W I
Sbjct: 924 LGKQIHGIVVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCA 983
Query: 195 REGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDE 254
G F ++ R + + +T +SVL+AC + + Q+HA +K G+ D
Sbjct: 984 LSGLEECSVGMFVDLLRGGLLPDQFTVASVLRACSSLGGGCHLATQIHACAMKAGVVLDS 1043
Query: 255 YVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKA 314
+V L+D+Y K + +AE +F + D ++ASWNAM+ GYI +G + +A + LM+
Sbjct: 1044 FVSTTLIDVYSKSGKMEEAEFLF-VNQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQE 1102
Query: 315 SGIQI-QESLINDLRIA 330
SG + Q +L N + A
Sbjct: 1103 SGERANQITLANAAKAA 1119
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 62/233 (26%), Positives = 109/233 (46%), Gaps = 9/233 (3%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L ++ +L M++ CG++++AR++F+E+P D +W MI G V+ + + + M
Sbjct: 1144 LFVISGVLDMYLKCGEMESARRIFNEIPSPDDVAWTTMISGCVENGQEEHALFTYHHMRL 1203
Query: 106 RKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
K V P + ++KAC +E G+Q+H KL + + + SL++ Y K
Sbjct: 1204 SK------VQPDEYTFATLVKACSLLTALEQGRQIHANTVKLNCAFDPFVMTSLVDMYAK 1257
Query: 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
+EDA +F + W A IV + G+ + F+EM + + TF V
Sbjct: 1258 CGNIEDARGLFKRTNTSRIASWNAMIVGLAQHGNAEEALQFFEEMKSRGVTPDRVTFIGV 1317
Query: 225 LKACGGVDDDGNCGRQMHANIVKIGLESD-EYVQCGLVDMYGKCRLLRDAERV 276
L AC ++ G+E + E+ C LVD + +R+AE+V
Sbjct: 1318 LSACSHSGLVSEAYENFYSMQKIYGIEPEIEHYSC-LVDALSRAGRIREAEKV 1369
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 92/204 (45%), Gaps = 14/204 (6%)
Query: 107 KKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166
H++ P W +L+ + ++ LGK+ H + G + LT +LI Y K
Sbjct: 618 PPAHLIHSIPQWF--SILRHAIAASDLPLGKRAHARILTSGHHPDRFLTNNLITMYSKCG 675
Query: 167 CLEDADFVFSQLK--RHNTVVWTAKI---VNNCREGHFHQVFNDFKEMGRERIKKNSYTF 221
L A +F + V W A + + R+G F+ F+ + R + +T
Sbjct: 676 SLSSARKLFDTTPDTSRDLVTWNAILSAHADKARDG-----FHLFRLLRRSFVSATRHTL 730
Query: 222 SSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIV 281
+ V K C + + +H VKIGL+ D +V LV++Y K +R+A +F+ +
Sbjct: 731 APVFKMC-LLSASPSAAESLHGYAVKIGLQWDVFVAGALVNIYAKFGRIREARVLFDGM- 788
Query: 282 DKKNIASWNAMLVGYIRNGLYVEA 305
+++ WN M+ Y+ GL EA
Sbjct: 789 GLRDVVLWNVMMKAYVDTGLEYEA 812
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 84/185 (45%), Gaps = 9/185 (4%)
Query: 44 PTLLFLNRLLLMHVSCGQLDTARQLFDEMP--LRDFNSWAVMIVGYVDVADYQECITLFA 101
P N L+ M+ CG L +AR+LFD P RD +W ++ + D A ++ LF
Sbjct: 659 PDRFLTNNLITMYSKCGSLSSARKLFDTTPDTSRDLVTWNAILSAHADKA--RDGFHLF- 715
Query: 102 EMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINF 161
+++R + + V K C+ + + + +HG K+G ++ + G+L+N
Sbjct: 716 RLLRRS----FVSATRHTLAPVFKMCLLSASPSAAESLHGYAVKIGLQWDVFVAGALVNI 771
Query: 162 YGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTF 221
Y KF + +A +F + + V+W + G ++ F E R ++ + T
Sbjct: 772 YAKFGRIREARVLFDGMGLRDVVLWNVMMKAYVDTGLEYEALLLFSEFNRTGLRPDDVTL 831
Query: 222 SSVLK 226
++ +
Sbjct: 832 CTLAR 836
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 77/315 (24%), Positives = 134/315 (42%), Gaps = 42/315 (13%)
Query: 26 SAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIV 85
S A E L+ ++ ++ + L+ ++ G++ AR LFD M LRD W VM+
Sbjct: 742 SPSAAESLHGYAVKIGLQWDVFVAGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMMK 801
Query: 86 GYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFK 145
YVD E + LF+E + + P + +C L V + L Q+
Sbjct: 802 AYVDTGLEYEALLLFSEFNRTG------LRPDDVTLCTLARVVKSKQNVLEWQL------ 849
Query: 146 LGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFND 205
+ + G+ + Y D + W + + G + +
Sbjct: 850 ----KQLKAYGTKLFMYDDDDDGSD------------VIAWNKTLSWFLQRGETWEAVDC 893
Query: 206 FKEMGRERIKKNSYTFSSVLKACGGVDDDGNC---GRQMHANIVKIGLESDEYVQCG--L 260
F +M R+ + TF +L G+ NC G+Q+H +V+ GL D+ V G L
Sbjct: 894 FVDMINSRVACDGLTFVVMLSVVAGL----NCLELGKQIHGIVVRSGL--DQVVSVGNCL 947
Query: 261 VDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGL-YVEATKFLYLMKASGIQI 319
++MY K + A VF +++ ++ SWN M+ G +GL F+ L++ +
Sbjct: 948 INMYVKTGSVSRARTVF-WQMNEVDLVSWNTMISGCALSGLEECSVGMFVDLLRGGLLPD 1006
Query: 320 QESLINDLRIACSSI 334
Q ++ + LR ACSS+
Sbjct: 1007 QFTVASVLR-ACSSL 1020
>gi|302760085|ref|XP_002963465.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
gi|300168733|gb|EFJ35336.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
Length = 829
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/296 (26%), Positives = 139/296 (46%), Gaps = 18/296 (6%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEM--PLRDFNSWAVMIVGYVDVADYQECITLFAEM 103
LL N ++ M+ CG ++ AR++FD M LRD SW +M+ YV ++ I L+ M
Sbjct: 282 LLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSAYVHNDRGKDAIQLYQRM 341
Query: 104 MKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYG 163
R V +L AC ++ LG+ +H + +N+ + +L++ Y
Sbjct: 342 QLRAD--------KVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVGNALVSMYA 393
Query: 164 KFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREG------H-FHQVFNDFKEMGRERIKK 216
K +A VF ++++ + + WT I R H F Q+ K +R+K
Sbjct: 394 KCGSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQRVKP 453
Query: 217 NSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERV 276
++ F ++L AC V G+ + GL SD+ V +V++YGKC + + R+
Sbjct: 454 DALAFVTILNACADVSALEQ-GKMVSEQAASCGLSSDKAVGTAVVNLYGKCGEIEEGRRI 512
Query: 277 FELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
F+ + + ++ WNAM+ Y + G EA K + M+ G++ + +ACS
Sbjct: 513 FDGVCSRPDVQLWNAMIAVYAQFGQSHEALKLFWRMEMEGVRPDSFSFVSILLACS 568
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 75/288 (26%), Positives = 130/288 (45%), Gaps = 7/288 (2%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
Y L+ C+ +D G +L+ ++ ++ N L+ M+ CG AR +FD+M
Sbjct: 350 YVSLLSACSSAED-VGLGRVLHKQIVNDELEKNVIVGNALVSMYAKCGSHTEARAVFDKM 408
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMK-RKKGHMLLVFP-AWIIVCVLKACVCT 130
R SW +I YV E LF +M++ K G V P A V +L AC
Sbjct: 409 EQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQRVKPDALAFVTILNACADV 468
Query: 131 MNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL-KRHNTVVWTAK 189
+E GK V G S + ++ +++N YGK +E+ +F + R + +W A
Sbjct: 469 SALEQGKMVSEQAASCGLSSDKAVGTAVVNLYGKCGEIEEGRRIFDGVCSRPDVQLWNAM 528
Query: 190 IVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG--GVDDDGNCGRQMHANIVK 247
I + G H+ F M E ++ +S++F S+L AC G++D G +
Sbjct: 529 IAVYAQFGQSHEALKLFWRMEMEGVRPDSFSFVSILLACSHTGLEDQGKSYFTSMTTEYR 588
Query: 248 IGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
+ ++ C + D+ G+ L++AE E + K + +W ++L
Sbjct: 589 NVTRTIQHFGC-VADLLGRGGRLKEAEEFLEKLPVKPDAVAWTSLLAA 635
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 69/280 (24%), Positives = 126/280 (45%), Gaps = 17/280 (6%)
Query: 41 NIKPTLLFL-NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITL 99
N+ P L L N ++ M+ C A+ FD + R+ SW ++ + +E +
Sbjct: 73 NLLPGNLILGNHIVSMYAHCDSPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRA 132
Query: 100 FAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
M R+ G V P A + L +C ++ G ++H ++ + ++ +L
Sbjct: 133 LERM--RQDG----VRPDAVTFITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSNAL 186
Query: 159 INFYGKFRCLEDADFVFSQLKR-HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKN 217
+N Y K L A VF++++R N + W+ + G+ + F+ M IK
Sbjct: 187 LNMYKKCGSLSHAKRVFAKMERTRNVISWSIMAGAHALHGNVWEALRHFRFMLLLGIKAT 246
Query: 218 SYTFSSVLKACGG---VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAE 274
++L AC V D GR +H+ I G ES+ V ++ MYG+C + +A
Sbjct: 247 KSAMVTILSACSSPALVQD----GRLIHSCIALSGFESELLVANAVMTMYGRCGAVEEAR 302
Query: 275 RVFELIVDK-KNIASWNAMLVGYIRNGLYVEATKFLYLMK 313
+VF+ + + +++ SWN ML Y+ N +A + M+
Sbjct: 303 KVFDAMDEALRDVVSWNIMLSAYVHNDRGKDAIQLYQRMQ 342
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 97/212 (45%), Gaps = 2/212 (0%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGS-SRNISLTGSLINFYGKFRCLEDADFVFSQLKRH 181
+L+ C + G+++H L K N+ L +++ Y DA F L++
Sbjct: 49 LLQRCARAQALPEGRKIHSLAVKHNLLPGNLILGNHIVSMYAHCDSPGDAKAAFDALEQR 108
Query: 182 NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQM 241
N WT + G + + M ++ ++ ++ TF + L +CG + + G ++
Sbjct: 109 NLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVTFITALGSCGDPESLRD-GIRI 167
Query: 242 HANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGL 301
H +V LE D V L++MY KC L A+RVF + +N+ SW+ M + +G
Sbjct: 168 HQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTRNVISWSIMAGAHALHGN 227
Query: 302 YVEATKFLYLMKASGIQIQESLINDLRIACSS 333
EA + M GI+ +S + + ACSS
Sbjct: 228 VWEALRHFRFMLLLGIKATKSAMVTILSACSS 259
>gi|302768409|ref|XP_002967624.1| hypothetical protein SELMODRAFT_169299 [Selaginella moellendorffii]
gi|300164362|gb|EFJ30971.1| hypothetical protein SELMODRAFT_169299 [Selaginella moellendorffii]
Length = 795
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/282 (28%), Positives = 142/282 (50%), Gaps = 9/282 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ ++ CG L+ A +F ++ +D SW+ MI + + I L M+ +G
Sbjct: 260 LINLYGKCGALEEAFGVFVQIDNKDIVSWSSMIAAFAQSGQAKSAIQLL--MLMDLEG-- 315
Query: 112 LLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
V P + V VL+A + GK++H + + G S ++ LT +L+ Y + +E
Sbjct: 316 --VRPNNVTFVNVLEAVTSLKAFQYGKEIHARIVQAGYSDDVCLTSALVKMYCNWGWVET 373
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
A +F + + V W++ I + + + F+EM + ++ NS TF S + AC G
Sbjct: 374 ARSIFESSRERDVVSWSSMIAGYSQNESPARALSLFREMEVDGVQPNSVTFVSAIDACAG 433
Query: 231 VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWN 290
V G Q+H + +GL+ D V LV++YGKC L +AE VF L + KKN+ +W
Sbjct: 434 VGALRR-GTQLHERVRCLGLDKDVPVATALVNLYGKCGRLEEAEAVF-LGMKKKNLLTWT 491
Query: 291 AMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
++ + Y +NG + K L+ M+ G++ + + ++C+
Sbjct: 492 SIAMAYGQNGHGSRSLKLLHGMELQGMKPDGIVFVAILVSCN 533
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 78/290 (26%), Positives = 136/290 (46%), Gaps = 5/290 (1%)
Query: 47 LFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR 106
L N ++ M++ CG D A +FD M ++ +W +I + + + + LF +M+
Sbjct: 51 LLENIVIQMYLRCGCTDLALDVFDRMKDQNVVAWTSLISAFTFAGHFGDAMVLFRKMLLS 110
Query: 107 KKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166
+ F + +LK N++ GK+VH + + G + + ++ YGK
Sbjct: 111 GVSPDRITFTS----ILLKWSGRERNLDEGKRVHSHIMQTGYEGDRMVMNLVVEMYGKCG 166
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
+E A VF ++ N WT I + GH +V M + +K + YTF++VL
Sbjct: 167 DVEQAGNVFDSIQDPNVFSWTIIIAAYAQNGHCMEVLRLLSRMNQAGVKPDGYTFTTVLG 226
Query: 227 ACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
AC V A I GL+ D V L+++YGKC L +A VF + +D K+I
Sbjct: 227 ACTAVGALEEAKILHAATISSTGLDRDAAVGTALINLYGKCGALEEAFGVF-VQIDNKDI 285
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
SW++M+ + ++G A + L LM G++ ++ A +S+ A
Sbjct: 286 VSWSSMIAAFAQSGQAKSAIQLLMLMDLEGVRPNNVTFVNVLEAVTSLKA 335
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/292 (26%), Positives = 130/292 (44%), Gaps = 10/292 (3%)
Query: 47 LFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR 106
+ +N ++ M+ CG ++ A +FD + + SW ++I Y E + L + M +
Sbjct: 153 MVMNLVVEMYGKCGDVEQAGNVFDSIQDPNVFSWTIIIAAYAQNGHCMEVLRLLSRMNQA 212
Query: 107 KKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHG-LLFKLGSSRNISLTGSLINFYGK 164
V P + VL AC +E K +H + G R+ ++ +LIN YGK
Sbjct: 213 G------VKPDGYTFTTVLGACTAVGALEEAKILHAATISSTGLDRDAAVGTALINLYGK 266
Query: 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
LE+A VF Q+ + V W++ I + G M E ++ N+ TF +V
Sbjct: 267 CGALEEAFGVFVQIDNKDIVSWSSMIAAFAQSGQAKSAIQLLMLMDLEGVRPNNVTFVNV 326
Query: 225 LKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
L+A + G+++HA IV+ G D + LV MY + A +FE ++
Sbjct: 327 LEAVTSLKAF-QYGKEIHARIVQAGYSDDVCLTSALVKMYCNWGWVETARSIFE-SSRER 384
Query: 285 NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
++ SW++M+ GY +N A M+ G+Q AC+ + A
Sbjct: 385 DVVSWSSMIAGYSQNESPARALSLFREMEVDGVQPNSVTFVSAIDACAGVGA 436
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 109/221 (49%), Gaps = 6/221 (2%)
Query: 121 VCVLKACVCTMNMELGKQVHGLLFK---LGSSRNIS--LTGSLINFYGKFRCLEDADFVF 175
+L AC + GK+VHGL+ + L R L +I Y + C + A VF
Sbjct: 14 AAILTACSDLRALPEGKRVHGLVMRESLLQDERPDESLLENIVIQMYLRCGCTDLALDVF 73
Query: 176 SQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDG 235
++K N V WT+ I GHF F++M + + TF+S+L G + +
Sbjct: 74 DRMKDQNVVAWTSLISAFTFAGHFGDAMVLFRKMLLSGVSPDRITFTSILLKWSGRERNL 133
Query: 236 NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
+ G+++H++I++ G E D V +V+MYGKC + A VF+ I D N+ SW ++
Sbjct: 134 DEGKRVHSHIMQTGYEGDRMVMNLVVEMYGKCGDVEQAGNVFDSIQD-PNVFSWTIIIAA 192
Query: 296 YIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
Y +NG +E + L M +G++ + AC+++ A
Sbjct: 193 YAQNGHCMEVLRLLSRMNQAGVKPDGYTFTTVLGACTAVGA 233
>gi|15237442|ref|NP_199458.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170604|sp|Q9FHF9.1|PP419_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g46460, mitochondrial; Flags: Precursor
gi|10177583|dbj|BAB10814.1| unnamed protein product [Arabidopsis thaliana]
gi|332008005|gb|AED95388.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 697
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/267 (29%), Positives = 125/267 (46%), Gaps = 28/267 (10%)
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR------------- 106
G++D A +LF +MP++D +W M+ GY+ + + LF +M +
Sbjct: 142 GKVDQAERLFYQMPVKDTAAWNSMVHGYLQFGKVDDALKLFKQMPGKNVISWTTMICGLD 201
Query: 107 ---KKGHMLLVFPAWI----------IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNIS 153
+ G L +F + CV+ AC +G QVHGL+ KLG
Sbjct: 202 QNERSGEALDLFKNMLRCCIKSTSRPFTCVITACANAPAFHMGIQVHGLIIKLGFLYEEY 261
Query: 154 LTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRER 213
++ SLI FY + + D+ VF + VWTA + + F M R
Sbjct: 262 VSASLITFYANCKRIGDSRKVFDEKVHEQVAVWTALLSGYSLNKKHEDALSIFSGMLRNS 321
Query: 214 IKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDA 273
I N TF+S L +C + + G++MH VK+GLE+D +V LV MY + DA
Sbjct: 322 ILPNQSTFASGLNSCSALGTL-DWGKEMHGVAVKLGLETDAFVGNSLVVMYSDSGNVNDA 380
Query: 274 ERVFELIVDKKNIASWNAMLVGYIRNG 300
VF + + KK+I SWN+++VG ++G
Sbjct: 381 VSVF-IKIFKKSIVSWNSIIVGCAQHG 406
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 82/294 (27%), Positives = 137/294 (46%), Gaps = 21/294 (7%)
Query: 44 PTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEM 103
P + +++ + +L A LFDEMP+RD SW MI G V+ D + LF EM
Sbjct: 64 PHVSLYTKMITGYTRSNRLVDALNLFDEMPVRDVVSWNSMISGCVECGDMNTAVKLFDEM 123
Query: 104 MKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYG 163
+R ++ + A + C V Q L +++ ++ + S+++ Y
Sbjct: 124 PERS----VVSWTAMVNGCFRSGKV--------DQAERLFYQM-PVKDTAAWNSMVHGYL 170
Query: 164 KFRCLEDADFVFSQLKRHNTVVWTAKIV---NNCREGHFHQVFNDFKEMGRERIKKNSYT 220
+F ++DA +F Q+ N + WT I N R G + + FK M R IK S
Sbjct: 171 QFGKVDDALKLFKQMPGKNVISWTTMICGLDQNERSG---EALDLFKNMLRCCIKSTSRP 227
Query: 221 FSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELI 280
F+ V+ AC + G Q+H I+K+G +EYV L+ Y C+ + D+ +VF+
Sbjct: 228 FTCVITACANA-PAFHMGIQVHGLIIKLGFLYEEYVSASLITFYANCKRIGDSRKVFDEK 286
Query: 281 VDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
V ++ +A W A+L GY N + +A M + I +S +CS++
Sbjct: 287 VHEQ-VAVWTALLSGYSLNKKHEDALSIFSGMLRNSILPNQSTFASGLNSCSAL 339
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 74/297 (24%), Positives = 136/297 (45%), Gaps = 21/297 (7%)
Query: 5 CLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLN----RLLLMHVSCG 60
C+ T+ +TC+I C +A AF + + + IK L+ L+ + +C
Sbjct: 220 CIKSTSRPFTCVITACA----NAPAFHMGIQVHGLI-IKLGFLYEEYVSASLITFYANCK 274
Query: 61 QLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWI 119
++ +R++FDE W ++ GY +++ +++F+ M++ + P
Sbjct: 275 RIGDSRKVFDEKVHEQVAVWTALLSGYSLNKKHEDALSIFSGMLRNS------ILPNQST 328
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
L +C ++ GK++HG+ KLG + + SL+ Y + DA VF ++
Sbjct: 329 FASGLNSCSALGTLDWGKEMHGVAVKLGLETDAFVGNSLVVMYSDSGNVNDAVSVFIKIF 388
Query: 180 RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA---CGGVDDDGN 236
+ + V W + IV + G F F +M R + + TF+ +L A CG ++
Sbjct: 389 KKSIVSWNSIIVGCAQHGRGKWAFVIFGQMIRLNKEPDEITFTGLLSACSHCGFLEKGRK 448
Query: 237 CGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
M + I I + Y C +VD+ G+C L++AE + E +V K N W A+L
Sbjct: 449 LFYYMSSGINHIDRKIQHYT-C-MVDILGRCGKLKEAEELIERMVVKPNEMVWLALL 503
>gi|410109969|gb|AFV61064.1| pentatricopeptide repeat-containing protein 81, partial [Aloysia
macrostachya]
Length = 385
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/289 (27%), Positives = 137/289 (47%), Gaps = 10/289 (3%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMP-LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRK 107
LN + + CG ++ A++ F+ D +W M+ Y++ Q +F EM++++
Sbjct: 101 LNATITAYAECGCIEDAKRAFNSSDGYXDLVTWNSMLAAYLEHNLEQCGFDIFLEMVRQR 160
Query: 108 KGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF-- 165
L A+ + ++ AC LGK +HGL+ K G + ++ +LI+ Y K
Sbjct: 161 -----LEMDAYTLSSIISACFEDSQQSLGKSLHGLVIKKGFDQVTQISNALISMYLKSNS 215
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
R +EDA +F + + V W + + G FK + + + + YTF+++L
Sbjct: 216 RNVEDALKIFEHINIKDLVSWNTILTGLSQNGLSENALRLFKNIHLDHLVIDQYTFAAIL 275
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
++C + GRQ+H +VK G E +EYV L+ MY KC ++ DA FE K+
Sbjct: 276 RSCSDLAT-LQLGRQIHVLVVKSGFEGNEYVSSALIFMYSKCGIIEDAWESFE-SSHKET 333
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
+WN+M+ Y ++G A YLM I++ ACS +
Sbjct: 334 SVTWNSMIFAYAQHGQGKIALDLFYLMTERHIKLDHVTFVAALTACSHV 382
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 78/292 (26%), Positives = 140/292 (47%), Gaps = 12/292 (4%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEM-MKRKKGH 110
L M+ C +++ A LF M R+ SW +I GY ++ + + CI LF M M+ K
Sbjct: 3 LFDMYAKCRKVEDANYLFKYMQERNTVSWNALIGGYAEMGNLERCIELFMCMEMEGVKID 62
Query: 111 MLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
P +L + +L +Q+HG + K G ++ + I Y + C+ED
Sbjct: 63 DATFAP------LLTLLYDAESYDLTRQLHGKIMKCGLEHENTVLNATITAYAECGCIED 116
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQV-FNDFKEMGRERIKKNSYTFSSVLKACG 229
A F+ + +V ++ E + Q F+ F EM R+R++ ++YT SS++ AC
Sbjct: 117 AKRAFNSSDGYXDLVTWNSMLAAYLEHNLEQCGFDIFLEMVRQRLEMDAYTLSSIISACF 176
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGK--CRLLRDAERVFELIVDKKNIA 287
D + G+ +H ++K G + + L+ MY K R + DA ++FE I + K++
Sbjct: 177 E-DSQQSLGKSLHGLVIKKGFDQVTQISNALISMYLKSNSRNVEDALKIFEHI-NIKDLV 234
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKI 339
SWN +L G +NGL A + + + I + + +CS ++ ++
Sbjct: 235 SWNTILTGLSQNGLSENALRLFKNIHLDHLVIDQYTFAAILRSCSDLATLQL 286
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 72/146 (49%), Gaps = 1/146 (0%)
Query: 156 GSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIK 215
+L + Y K R +EDA+++F ++ NTV W A I G+ + F M E +K
Sbjct: 1 SALFDMYAKCRKVEDANYLFKYMQERNTVSWNALIGGYAEMGNLERCIELFMCMEMEGVK 60
Query: 216 KNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAER 275
+ TF+ +L + + RQ+H I+K GLE + V + Y +C + DA+R
Sbjct: 61 IDDATFAPLLTLLYDAES-YDLTRQLHGKIMKCGLEHENTVLNATITAYAECGCIEDAKR 119
Query: 276 VFELIVDKKNIASWNAMLVGYIRNGL 301
F ++ +WN+ML Y+ + L
Sbjct: 120 AFNSSDGYXDLVTWNSMLAAYLEHNL 145
>gi|357160830|ref|XP_003578890.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g04780-like [Brachypodium distachyon]
Length = 631
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/275 (28%), Positives = 131/275 (47%), Gaps = 7/275 (2%)
Query: 47 LFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR 106
L N L+ ++ CG+ D AR +FD M +R SW MI GY + + + LF+ M R
Sbjct: 93 LTCNILINLYTKCGRNDCARLVFDIMHVRSIVSWNTMIAGYTHSGEDVQALKLFSRM-HR 151
Query: 107 KKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166
+ HM + + + AC + KQ+H + KL N + ++++ Y K
Sbjct: 152 EGTHM----SEFTLSSTICACAAKYAINECKQLHTIALKLALDSNSFVGTAILDVYAKCN 207
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
++DA +VF ++ V W++ + G + + F+ RE ++ +T S++L
Sbjct: 208 MIKDACWVFEKMPERTLVTWSSLFAGYVQNGLHEEALHLFRCAQREGVELTEFTLSAILS 267
Query: 227 ACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
AC + G Q+HA I+K G + +V LVD+Y +C + A +F + + KN+
Sbjct: 268 ACASLALKIE-GIQLHAVILKCGFHGNFFVAASLVDVYARCGQIEKAYALFAYM-EHKNV 325
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQE 321
WNAM+ + R+ EA M+ GI E
Sbjct: 326 VIWNAMIASFSRHAHSWEAMILFEKMQQLGIFPNE 360
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 104/212 (49%), Gaps = 2/212 (0%)
Query: 124 LKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNT 183
L+ C ++ +GK HGL G + LIN Y K + A VF + +
Sbjct: 64 LQLCAKRKSLLVGKSCHGLAIHFGLVTDTLTCNILINLYTKCGRNDCARLVFDIMHVRSI 123
Query: 184 VVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHA 243
V W I G Q F M RE + +T SS + AC C +Q+H
Sbjct: 124 VSWNTMIAGYTHSGEDVQALKLFSRMHREGTHMSEFTLSSTICACAAKYAINEC-KQLHT 182
Query: 244 NIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYV 303
+K+ L+S+ +V ++D+Y KC +++DA VFE + ++ + +W+++ GY++NGL+
Sbjct: 183 IALKLALDSNSFVGTAILDVYAKCNMIKDACWVFEKM-PERTLVTWSSLFAGYVQNGLHE 241
Query: 304 EATKFLYLMKASGIQIQESLINDLRIACSSIS 335
EA + G+++ E ++ + AC+S++
Sbjct: 242 EALHLFRCAQREGVELTEFTLSAILSACASLA 273
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 65/260 (25%), Positives = 115/260 (44%), Gaps = 30/260 (11%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
+L ++ C + A +F++MP R +W+ + GYV ++E + LF +++G
Sbjct: 199 ILDVYAKCNMIKDACWVFEKMPERTLVTWSSLFAGYVQNGLHEEALHLF--RCAQREGVE 256
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
L F + +L AC G Q+H ++ K G N + SL++ Y + +E A
Sbjct: 257 LTEFT---LSAILSACASLALKIEGIQLHAVILKCGFHGNFFVAASLVDVYARCGQIEKA 313
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
+F+ ++ N V+W A I + R H + F++M + I N T+ SVL C
Sbjct: 314 YALFAYMEHKNVVIWNAMIASFSRHAHSWEAMILFEKMQQLGIFPNEVTYLSVLSVCS-- 371
Query: 232 DDDGNCGRQMHANIVKIG------LESDEYVQCG------LVDMYGKCRLLRDAERVFEL 279
HA +V+ G L SD V+ +VD+ G+ +A +
Sbjct: 372 ----------HAGLVEKGRHYFSLLMSDRTVEPNVLHYSCMVDVLGRSGKTDEAWELLNK 421
Query: 280 IVDKKNIASWNAMLVGYIRN 299
+ + + W ++L G RN
Sbjct: 422 MPFEPTASMWGSLL-GSCRN 440
>gi|357138408|ref|XP_003570784.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Brachypodium distachyon]
Length = 750
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 92/340 (27%), Positives = 155/340 (45%), Gaps = 42/340 (12%)
Query: 32 LLNHIRKRVNIKP--TLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVD 89
LL H R+ + P L+ N LL G + +LF +P RD S+ ++ G+
Sbjct: 61 LLPHARRVFDAMPGRNLVTGNSLLSALARAGLVRDMERLFTSLPQRDAVSYNALLAGFSR 120
Query: 90 VADYQECITLFAEMMKRKKGHMLLVFPAWIIVC-VLKACVCTMNMELGKQVHGLLFKLGS 148
+ + +++ + G V P+ I + V+ + LG+QVH + +LG
Sbjct: 121 AGAHARAAGAYVALLRDEAG----VRPSRITMSGVVMVASALGDRALGRQVHCQILRLGF 176
Query: 149 SRNISLTGS-LINFYGKFRCLEDADFVFSQLKRHN------------------------- 182
+ TGS L++ Y K + DA VF +++ N
Sbjct: 177 G-AYAFTGSPLVDMYAKVGPIGDARRVFDEMEGKNVVMCNTMITGLLRCKMVAEARALFE 235
Query: 183 ------TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGN 236
++ WT + + G + + F+ M E + + YTF S+L ACG +
Sbjct: 236 AIEERDSITWTTMVTGLTQNGLESEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEE 295
Query: 237 CGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGY 296
G+Q+HA I + E + +V LVDMY KCR +R AE VF ++ KNI SW AM+VGY
Sbjct: 296 -GKQIHAYITRTCYEDNVFVGSALVDMYSKCRSVRLAEAVFRRMM-WKNIISWTAMIVGY 353
Query: 297 IRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+NG EA + M+ GI+ + + + +C+++++
Sbjct: 354 GQNGCGEEAVRVFSEMQRDGIKPDDFTLGSVISSCANLAS 393
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/283 (27%), Positives = 126/283 (44%), Gaps = 7/283 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N ++ + C + AR LF+ + RD +W M+ G E + +F M G
Sbjct: 215 NTMITGLLRCKMVAEARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRRMRAEGVG 274
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
F + +L AC +E GKQ+H + + N+ + +L++ Y K R +
Sbjct: 275 IDQYTFGS-----ILTACGALAALEEGKQIHAYITRTCYEDNVFVGSALVDMYSKCRSVR 329
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A+ VF ++ N + WTA IV + G + F EM R+ IK + +T SV+ +C
Sbjct: 330 LAEAVFRRMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRDGIKPDDFTLGSVISSCA 389
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ G Q H + GL V LV +YGKC + DA R+F+ + + SW
Sbjct: 390 NLASLEE-GAQFHCLALVSGLRPYVTVSNALVTLYGKCGSIEDAHRLFDEMSFHDQV-SW 447
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
A+++GY + G E M + G++ + ACS
Sbjct: 448 TALVMGYAQFGKAKETIDLFEKMLSKGVKPDGVTFIGVLSACS 490
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 70/159 (44%), Gaps = 12/159 (7%)
Query: 41 NIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLF 100
++P + N L+ ++ CG ++ A +LFDEM D SW +++GY +E I LF
Sbjct: 408 GLRPYVTVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVMGYAQFGKAKETIDLF 467
Query: 101 AEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGS--- 157
+M+ + + F + VL AC + ++ G+ + +I
Sbjct: 468 EKMLSKGVKPDGVTF-----IGVLSACSRSGLVDKGRS---YFHSMQQDHDIVPLDDHYT 519
Query: 158 -LINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCR 195
+I+ Y + L+ A+ Q+ R A +++ CR
Sbjct: 520 CMIDLYSRSGWLKQAEEFIKQMPRCPDAFGWATLLSACR 558
>gi|302788029|ref|XP_002975784.1| hypothetical protein SELMODRAFT_150748 [Selaginella moellendorffii]
gi|300156785|gb|EFJ23413.1| hypothetical protein SELMODRAFT_150748 [Selaginella moellendorffii]
Length = 590
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 84/318 (26%), Positives = 145/318 (45%), Gaps = 44/318 (13%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ CG L+ AR++F+ + +D SW+ MI Y + E I ++ M
Sbjct: 82 LVNMYAKCGNLEGARKVFNRLERKDVISWSTMISAYNQSGRHSEAIEIYRLMESETS--- 138
Query: 112 LLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
V P A V V+ AC ++ G+QVHG L LG ++++ +L+ Y K LED
Sbjct: 139 --VEPNAVTFVGVIGACTGCGDVIRGRQVHGRLVSLGLETDVAVGSALVQLYVKCGNLED 196
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
A F ++++ + + W + G QV + M ++ N+ T+++VL AC
Sbjct: 197 AKKAFDRVEKRDVLCWNFMLSAYSERGSPQQVIEAYDAMD---VEPNAVTYTNVLIACSA 253
Query: 231 VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE--------LIVD 282
++D G+++H+ IV GLE+D ++ L+ +Y KCR L+ A +VFE ++ D
Sbjct: 254 MEDLAQ-GQKVHSRIVSSGLETDMTMETSLLSLYIKCRSLKSACQVFEAMGKKDTDVVTD 312
Query: 283 --------------------------KKNIASWNAMLVGYIRNGLYVEATKFLYLMKASG 316
++++ W AM+ Y + G EA M +
Sbjct: 313 TALLNMYAACGNLEAAKRVFGSRRDERRDVVFWTAMIASYAQAGRGEEALALYKTMLSEE 372
Query: 317 IQIQESLINDLRIACSSI 334
I+ + ACSS+
Sbjct: 373 IKPNSVTYTSVLSACSSL 390
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 81/265 (30%), Positives = 126/265 (47%), Gaps = 13/265 (4%)
Query: 72 MPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCT 130
M ++ SW++MI Y E LF M + P A + VL AC C
Sbjct: 1 MQQKNVYSWSMMIGAYAQNGRRNEAFLLFERMESEG------IRPNAVTCLHVLGACSCQ 54
Query: 131 MNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKI 190
+ GK+VH + +ISL SL+N Y K LE A VF++L+R + + W+ I
Sbjct: 55 NELPFGKKVHAYISASEFKWDISLQTSLVNMYAKCGNLEGARKVFNRLERKDVISWSTMI 114
Query: 191 VNNCREGHFHQVFNDFKEMGRE-RIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIG 249
+ G + ++ M E ++ N+ TF V+ AC G D GRQ+H +V +G
Sbjct: 115 SAYNQSGRHSEAIEIYRLMESETSVEPNAVTFVGVIGACTGCGDVIR-GRQVHGRLVSLG 173
Query: 250 LESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFL 309
LE+D V LV +Y KC L DA++ F+ V+K+++ WN ML Y G + +
Sbjct: 174 LETDVAVGSALVQLYVKCGNLEDAKKAFDR-VEKRDVLCWNFMLSAYSERG---SPQQVI 229
Query: 310 YLMKASGIQIQESLINDLRIACSSI 334
A ++ ++ IACS++
Sbjct: 230 EAYDAMDVEPNAVTYTNVLIACSAM 254
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 71/303 (23%), Positives = 132/303 (43%), Gaps = 29/303 (9%)
Query: 6 LPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTA 65
+ + T + + IK C K + FE + +K ++ LN M+ +CG L+ A
Sbjct: 276 MTMETSLLSLYIK-CRSLKSACQVFEAMG--KKDTDVVTDTALLN----MYAACGNLEAA 328
Query: 66 RQLF----DEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIV 121
+++F DE RD W MI Y +E + L+ M+ + + + +
Sbjct: 329 KRVFGSRRDER--RDVVFWTAMIASYAQAGRGEEALALYKTMLSEEIKPNSVTYTS---- 382
Query: 122 CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH 181
VL AC N+ G+++H L ++++ SL++ Y + L DA F+++
Sbjct: 383 -VLSACSSLGNILEGRKIHSSLEGKAEELDVAVQNSLLSLYARCGSLRDAWSCFAKIHNR 441
Query: 182 NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQM 241
+ WT + GH + +EM + ++ TF SVL AC +G+ R
Sbjct: 442 DVFSWTGMVAAFAHHGHSARALELVREMELCGVSPDAVTFQSVLHAC---SHEGSLERGW 498
Query: 242 HANIVKIGLE-----SDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGY 296
A+ V + ++ S ++ C +VD+ + L +A V + + ++ W ML+G
Sbjct: 499 -ASFVSMAVDYAVEPSKDHYLC-MVDLLARAGRLAEAREVIQFVGLERESMGW-MMLLGA 555
Query: 297 IRN 299
R
Sbjct: 556 SRT 558
>gi|222628911|gb|EEE61043.1| hypothetical protein OsJ_14892 [Oryza sativa Japonica Group]
Length = 717
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 98/370 (26%), Positives = 153/370 (41%), Gaps = 55/370 (14%)
Query: 8 ITTDMYTCLIKECTFQKDSAGAFELLNHIRKRV--------NIKPTLLFLNRLLLMHVSC 59
+ + +Y L++ T + A A + H+ T LF NR + +C
Sbjct: 42 VPSAVYASLLRLATSHRSLAAARRIATHLASSTAPSTSHSFTATSTFLF-NRAVESLAAC 100
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK---RKKGHMLLVFP 116
G L AR+LFD MP RD SW +I Y + E I+LF+ M R K L
Sbjct: 101 GSLTDARKLFDAMPRRDGGSWNAIISAYSRGEEPTEAISLFSAMNSCGVRPKDVTL---- 156
Query: 117 AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFS 176
VL C +++ +Q+HG + K N+ L +L++ YGK L +A F
Sbjct: 157 ----ASVLGCCAECLDLHGARQLHGHIAKRDFQSNVILGTALVDVYGKCFALSEARRAFD 212
Query: 177 QLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGN 236
+ + N + W I G + F M + YT S L AC D+G
Sbjct: 213 GIPKPNDISWNVIIRRYLLAGMGDLAIDMFFRMVWAGVSPLVYTVSQALLAC---RDNGA 269
Query: 237 C--GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFEL--------------- 279
GR++H +++ G E +V+ +VDMY KC + A+R+F+L
Sbjct: 270 LEEGRRIHTFVLRHGYEQHVHVRSSVVDMYAKCGAIDLAQRLFDLAPVKDIVMSTSIVSG 329
Query: 280 ------IVDKK---------NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLI 324
I D K N+ SWNAML GY+R+ A + M+ ++ +
Sbjct: 330 LASCGRITDAKRVFEGMEEHNLVSWNAMLTGYVRSMDLTSALQLFQQMRQETKELDAVTL 389
Query: 325 NDLRIACSSI 334
+ AC+ +
Sbjct: 390 GCVLNACTGL 399
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 79/263 (30%), Positives = 121/263 (46%), Gaps = 10/263 (3%)
Query: 57 VSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP 116
SCG++ A+++F+ M + SW M+ GYV D + LF +M + K
Sbjct: 331 ASCGRITDAKRVFEGMEEHNLVSWNAMLTGYVRSMDLTSALQLFQQMRQETK-----ELD 385
Query: 117 AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDAD--FV 174
A + CVL AC +++ G++VH FK G L +L+ Y K CL A+ +
Sbjct: 386 AVTLGCVLNACTGLLDLGKGEEVHTFAFKSGFIGYPFLKNALLRMYSKCGCLRSAERLLL 445
Query: 175 FSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDD 234
F ++ W + I R EM E N TFSS L AC +
Sbjct: 446 FEMGSERDSYSWNSLISGYERHSMSEAALLALSEMHYE-ATPNQSTFSSALAACANIFLL 504
Query: 235 GNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLV 294
N G+Q+HA +++ G D+ +Q L+DMY KCRL + R+FE +++ WN+M+
Sbjct: 505 -NHGKQIHAYMIRNGYVIDDILQSALIDMYSKCRLFDYSMRIFE-AGPSQDVILWNSMIF 562
Query: 295 GYIRNGLYVEATKFLYLMKASGI 317
G NG + + M GI
Sbjct: 563 GCAYNGKGEYGLELFFEMSKQGI 585
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 88/343 (25%), Positives = 150/343 (43%), Gaps = 42/343 (12%)
Query: 25 DSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMI 84
D GA +L HI KR + + ++ L+ ++ C L AR+ FD +P + SW V+I
Sbjct: 168 DLHGARQLHGHIAKR-DFQSNVILGTALVDVYGKCFALSEARRAFDGIPKPNDISWNVII 226
Query: 85 VGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLF 144
Y+ I +F M+ G LV+ + L AC +E G+++H +
Sbjct: 227 RRYLLAGMGDLAIDMFFRMVW--AGVSPLVY---TVSQALLACRDNGALEEGRRIHTFVL 281
Query: 145 KLGSSRNISLTGSLINFYGKFRCLE-------------------------------DADF 173
+ G +++ + S+++ Y K ++ DA
Sbjct: 282 RHGYEQHVHVRSSVVDMYAKCGAIDLAQRLFDLAPVKDIVMSTSIVSGLASCGRITDAKR 341
Query: 174 VFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDD 233
VF ++ HN V W A + R F++M +E + ++ T VL AC G+ D
Sbjct: 342 VFEGMEEHNLVSWNAMLTGYVRSMDLTSALQLFQQMRQETKELDAVTLGCVLNACTGLLD 401
Query: 234 DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAER--VFELIVDKKNIASWNA 291
G G ++H K G +++ L+ MY KC LR AER +FE+ ++ + SWN+
Sbjct: 402 LGK-GEEVHTFAFKSGFIGYPFLKNALLRMYSKCGCLRSAERLLLFEMGSERDSY-SWNS 459
Query: 292 MLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
++ GY R+ + A L M Q + + L AC++I
Sbjct: 460 LISGYERHSMSEAALLALSEMHYEATPNQSTFSSAL-AACANI 501
>gi|410109973|gb|AFV61066.1| pentatricopeptide repeat-containing protein 81, partial
[Citharexylum montevidense]
Length = 366
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 90/345 (26%), Positives = 160/345 (46%), Gaps = 25/345 (7%)
Query: 4 LCLPITTDMYT--CLIKECTFQK-----DSAGAFELLNHIRKRV---NIKPTLLFLNRLL 53
JC+ + DM + + TF D ++EL + ++ ++ LN +
Sbjct: 25 JCIDLFLDMEMEGVEVDDATFAPILALLDDDESYELXRQLHGKIMKCGLELENTVLNATI 84
Query: 54 LMHVSCGQLDTARQLFDEMP-LRDFNSWAVMIVGYVDVADYQEC-ITLFAEMMKRKKGHM 111
+ CG + A+++FD RD +W M+ Y++ D +EC +F EM++++
Sbjct: 85 AAYSECGCITDAKRVFDSADGFRDLVTWNSMLAAYLE-HDLEECGFDIFLEMVRKR---- 139
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC--LE 169
L A+ + ++ AC + GK +HGL+ K+G + + +L + Y K ++
Sbjct: 140 -LELDAYTLTSIISACFGDAH---GKSLHGLVIKMGLEQVTQICNALTSMYLKSNSQNID 195
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
DA F Q+ + V W + G F++M + + + YTF++VL++C
Sbjct: 196 DALKXFQQMDLKDLVSWNTILTGLSXNGLSENALRLFQQMHLDYLVLDQYTFAAVLRSCS 255
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ GRQ+H VK G E +EYV L+ MY KC ++ DA FE K++ +W
Sbjct: 256 DLAT-LQLGRQIHVLAVKSGFEGNEYVASALIFMYSKCGIIEDAWDSFE-DSQKESXVTW 313
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
N+++ Y ++G A YLM I+I + ACS I
Sbjct: 314 NSIIFAYAQHGQGKIALDLFYLMXEKQIKIDHVTLVAALTACSHI 358
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/265 (26%), Positives = 124/265 (46%), Gaps = 15/265 (5%)
Query: 79 SWAVMIVGYVDVADYQECITLFAEM-MKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGK 137
SW +I GY ++ + + CI LF +M M+ + P +L + EL +
Sbjct: 9 SWNALIGGYAEMGNLKJCIDLFLDMEMEGVEVDDATFAP------ILALLDDDESYELXR 62
Query: 138 QVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR-HNTVVWTAKIVNNCRE 196
Q+HG + K G ++ + I Y + C+ DA VF + V W + +
Sbjct: 63 QLHGKIMKCGLELENTVLNATIAAYSECGCITDAKRVFDSADGFRDLVTWNSMLAAYLEH 122
Query: 197 GHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYV 256
F+ F EM R+R++ ++YT +S++ AC G D + G+ +H ++K+GLE +
Sbjct: 123 DLEECGFDIFLEMVRKRLELDAYTLTSIISACFG---DAH-GKSLHGLVIKMGLEQVTQI 178
Query: 257 QCGLVDMYGKC--RLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKA 314
L MY K + + DA + F+ + D K++ SWN +L G NGL A + M
Sbjct: 179 CNALTSMYLKSNSQNIDDALKXFQQM-DLKDLVSWNTILTGLSXNGLSENALRLFQQMHL 237
Query: 315 SGIQIQESLINDLRIACSSISASKI 339
+ + + + +CS ++ ++
Sbjct: 238 DYLVLDQYTFAAVLRSCSDLATLQL 262
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 65/126 (51%), Gaps = 5/126 (3%)
Query: 178 LKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGN- 236
++ NTV W A I G+ + F +M E ++ + TF+ +L +DDD +
Sbjct: 2 MQEPNTVSWNALIGGYAEMGNLKJCIDLFLDMEMEGVEVDDATFAPILAL---LDDDESY 58
Query: 237 -CGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
RQ+H I+K GLE + V + Y +C + DA+RVF+ +++ +WN+ML
Sbjct: 59 ELXRQLHGKIMKCGLELENTVLNATIAAYSECGCITDAKRVFDSADGFRDLVTWNSMLAA 118
Query: 296 YIRNGL 301
Y+ + L
Sbjct: 119 YLEHDL 124
>gi|302768953|ref|XP_002967896.1| hypothetical protein SELMODRAFT_89004 [Selaginella moellendorffii]
gi|300164634|gb|EFJ31243.1| hypothetical protein SELMODRAFT_89004 [Selaginella moellendorffii]
Length = 471
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 89/297 (29%), Positives = 136/297 (45%), Gaps = 14/297 (4%)
Query: 12 MYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDE 71
MY L++ C ++ + HI R + L N L+ M+ CG + AR +FD
Sbjct: 1 MYEFLMRFCGSRQLLGEGKRIHQHIVDRGHGDDRFL-ANLLVQMYGQCGAAEIARAVFDR 59
Query: 72 MPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTM 131
+ R+ SW +MI Y + LF EM + PA IV V VC
Sbjct: 60 IADRNVFSWTLMIAAYAQNGHDAAALRLFREMDLHGE-------PADRIVLVEILGVCA- 111
Query: 132 NMEL---GKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTA 188
+EL G+ +H + LG + ++ N Y + L A +F +L+ + V W A
Sbjct: 112 RLELLAQGQTIHARIVALGFDADTVAATAIFNMYARCGFLRRARELFDRLEEKSVVSWNA 171
Query: 189 KIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKI 248
I R G Q + F+ + +E I+ + ++S +L A + + GR +HA I
Sbjct: 172 MITAYARTGQARQALDIFRRLDQEGIEADEMSYSGLLAAF-AMRQSLDKGRILHARIKAC 230
Query: 249 GLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEA 305
G E+ V L++MYGKC + +A R+F+ V KNI SWN +L Y NG EA
Sbjct: 231 GFEAMLQVANPLINMYGKCGCVEEARRIFD-AVPSKNIVSWNTILAAYAGNGRVTEA 286
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 83/186 (44%), Gaps = 2/186 (1%)
Query: 136 GKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCR 195
GK++H + G + L L+ YG+ E A VF ++ N WT I +
Sbjct: 18 GKRIHQHIVDRGHGDDRFLANLLVQMYGQCGAAEIARAVFDRIADRNVFSWTLMIAAYAQ 77
Query: 196 EGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEY 255
GH F+EM + +L C ++ G+ +HA IV +G ++D
Sbjct: 78 NGHDAAALRLFREMDLHGEPADRIVLVEILGVCARLELLAQ-GQTIHARIVALGFDADTV 136
Query: 256 VQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKAS 315
+ +MY +C LR A +F+ + ++K++ SWNAM+ Y R G +A +
Sbjct: 137 AATAIFNMYARCGFLRRARELFDRL-EEKSVVSWNAMITAYARTGQARQALDIFRRLDQE 195
Query: 316 GIQIQE 321
GI+ E
Sbjct: 196 GIEADE 201
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/242 (22%), Positives = 105/242 (43%), Gaps = 14/242 (5%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+ CG L AR+LFD + + SW MI Y ++ + +F + + +
Sbjct: 144 MYARCGFLRRARELFDRLEEKSVVSWNAMITAYARTGQARQALDIFRRLDQEGIEADEMS 203
Query: 115 FPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFV 174
+ +L A +++ G+ +H + G + + LIN YGK C+E+A +
Sbjct: 204 YSG-----LLAAFAMRQSLDKGRILHARIKACGFEAMLQVANPLINMYGKCGCVEEARRI 258
Query: 175 FSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC---GGV 231
F + N V W + G + + F ++ + + +F VL+AC G V
Sbjct: 259 FDAVPSKNIVSWNTILAAYAGNGRVTEALDLFAKIA---MPPDWISFCVVLQACSHAGLV 315
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
D+ + M + + G+E +V+++GK L +AER+ + + + W +
Sbjct: 316 DEAWDFLLSMRS---QHGIEPRRAHYSAMVEIFGKAGKLEEAERLIAAMPVEPDAVIWRS 372
Query: 292 ML 293
+L
Sbjct: 373 LL 374
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 71/159 (44%), Gaps = 19/159 (11%)
Query: 35 HIR-KRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADY 93
H R K + L N L+ M+ CG ++ AR++FD +P ++ SW ++ Y
Sbjct: 224 HARIKACGFEAMLQVANPLINMYGKCGCVEEARRIFDAVPSKNIVSWNTILAAYAGNGRV 283
Query: 94 QECITLFAEMMKRKKGHMLLVFPAWIIVC-VLKACVCTMNMELGKQVHGLLFKLGSSRNI 152
E + LFA+ + + P WI C VL+AC + L + L + S I
Sbjct: 284 TEALDLFAK---------IAMPPDWISFCVVLQACS---HAGLVDEAWDFLLSMRSQHGI 331
Query: 153 SLT----GSLINFYGKFRCLEDADFVFSQLK-RHNTVVW 186
+++ +GK LE+A+ + + + + V+W
Sbjct: 332 EPRRAHYSAMVEIFGKAGKLEEAERLIAAMPVEPDAVIW 370
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
Query: 221 FSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELI 280
+ +++ CG G G+++H +IV G D ++ LV MYG+C A VF+ I
Sbjct: 2 YEFLMRFCGSRQLLGE-GKRIHQHIVDRGHGDDRFLANLLVQMYGQCGAAEIARAVFDRI 60
Query: 281 VDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASG 316
D+ N+ SW M+ Y +NG A + M G
Sbjct: 61 ADR-NVFSWTLMIAAYAQNGHDAAALRLFREMDLHG 95
>gi|357514793|ref|XP_003627685.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|358344437|ref|XP_003636296.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|358345563|ref|XP_003636846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355502231|gb|AES83434.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355502781|gb|AES83984.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355521707|gb|AET02161.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 791
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 87/267 (32%), Positives = 137/267 (51%), Gaps = 16/267 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQ--ECITLFAEMMKRK 107
N L+ M+ G LD A ++F+EM +RD SW M+ GY + E + LF M++
Sbjct: 226 NALVTMYSRWGGLDEAGRVFNEMTIRDLVSWNAMLSGYAQEGECYGLEAVLLFGNMVREG 285
Query: 108 KGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
MLL + + + AC T N+E GKQ+HGL KLG ++++ LI+ Y K +
Sbjct: 286 ---MLLDHVS--LTGAISACGYTKNLEFGKQIHGLAQKLGYGTHVAVCNVLISTYSKCKV 340
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
L DA VF + N V WT I + E + +FN + G + N TF +L A
Sbjct: 341 LRDAKAVFQDMSARNVVSWTTLI--SIDEENVVSLFNAMRVDG---VYPNDVTFIGLLHA 395
Query: 228 CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
+ + G +H +K L S++ V L+ MY K +++++++FE + + +
Sbjct: 396 I-TIRNMVKEGLMVHGLCLKSCLSSEQNVSNSLITMYAKFESIQESKKIFEEL-NYQGTI 453
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKA 314
SWNA++ GY +NGL EA FL + A
Sbjct: 454 SWNALISGYAQNGLCKEA--FLTFLSA 478
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 86/265 (32%), Positives = 131/265 (49%), Gaps = 20/265 (7%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ + C L A+ +F +M R+ SW +I D + ++LF M R G
Sbjct: 329 NVLISTYSKCKVLRDAKAVFQDMSARNVVSWTTLIS-----IDEENVVSLFNAM--RVDG 381
Query: 110 HMLLVFPAWIIVCVLKACVCTMNM-ELGKQVHGLLFK--LGSSRNISLTGSLINFYGKFR 166
V+P + L + NM + G VHGL K L S +N+S SLI Y KF
Sbjct: 382 ----VYPNDVTFIGLLHAITIRNMVKEGLMVHGLCLKSCLSSEQNVS--NSLITMYAKFE 435
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
++++ +F +L T+ W A I + G + F F +E IK N YTF SVL
Sbjct: 436 SIQESKKIFEELNYQGTISWNALISGYAQNGLCKEAFLTFLSAIKE-IKPNQYTFGSVLN 494
Query: 227 ACGGVDDDG-NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
A +D G++ H++++K+GL +D +V L+DMYGK + +++RVF +K
Sbjct: 495 AIAAAEDISLKHGQRCHSHLIKLGLNTDPFVAGALLDMYGKRGNINESQRVFNETPEKTQ 554
Query: 286 IASWNAMLVGYIRNGLYVEATKFLY 310
SW M+ Y R+G Y E+ LY
Sbjct: 555 F-SWTGMISAYARHGDY-ESVMSLY 577
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 111/248 (44%), Gaps = 12/248 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ + ++++F+E+ + SW +I GY +E F +K K
Sbjct: 425 NSLITMYAKFESIQESKKIFEELNYQGTISWNALISGYAQNGLCKEAFLTFLSAIKEIKP 484
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMEL--GKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
+ + VL A ++ L G++ H L KLG + + + G+L++ YGK
Sbjct: 485 NQ------YTFGSVLNAIAAAEDISLKHGQRCHSHLIKLGLNTDPFVAGALLDMYGKRGN 538
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
+ ++ VF++ WT I R G + V + +KE+ RE +S TF SVL A
Sbjct: 539 INESQRVFNETPEKTQFSWTGMISAYARHGDYESVMSLYKEIEREGSNLDSITFLSVLAA 598
Query: 228 C--GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
C G+ D G+ + + K +E +VDM G+ L +AE + I
Sbjct: 599 CCRKGMVDVGHI--IFDSMVKKHSIEPTPEHYSIMVDMLGRVGRLDEAEELMHQIPGGPG 656
Query: 286 IASWNAML 293
++ ++L
Sbjct: 657 LSVLQSLL 664
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 73/298 (24%), Positives = 131/298 (43%), Gaps = 36/298 (12%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ G+ + A +F+ + D SW ++ G+ D FA M
Sbjct: 123 NSLMKMYCKAGRFELALCVFEGLSCPDIVSWNTILSGFEKSVDALN----FACFMHLNG- 177
Query: 110 HMLLVFPAWIIVCVLKACVC-----TMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
+VF L C G Q+H L+ K G + + +L+ Y +
Sbjct: 178 ---VVFDPVTYTTALSFCWDRDYWDDHGFLFGLQLHSLVVKCGFGCEVFIGNALVTMYSR 234
Query: 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFH--QVFNDFKEMGRERIKKNSYTFS 222
+ L++A VF+++ + V W A + +EG + + F M RE + + + +
Sbjct: 235 WGGLDEAGRVFNEMTIRDLVSWNAMLSGYAQEGECYGLEAVLLFGNMVREGMLLDHVSLT 294
Query: 223 SVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE---- 278
+ AC G + G+Q+H K+G + V L+ Y KC++LRDA+ VF+
Sbjct: 295 GAISAC-GYTKNLEFGKQIHGLAQKLGYGTHVAVCNVLISTYSKCKVLRDAKAVFQDMSA 353
Query: 279 ---------LIVDKKNIAS-WNAMLVGYIRNGLYVEATKFLYLMKASGIQ--IQESLI 324
+ +D++N+ S +NAM V +G+Y F+ L+ A I+ ++E L+
Sbjct: 354 RNVVSWTTLISIDEENVVSLFNAMRV----DGVYPNDVTFIGLLHAITIRNMVKEGLM 407
>gi|347954452|gb|AEP33726.1| chlororespiratory reduction 21, partial [Aethionema cordifolium]
Length = 618
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/264 (30%), Positives = 125/264 (47%), Gaps = 9/264 (3%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+ CG LD AR++FD MP R+ +W ++VGYV +E I L ++MM +
Sbjct: 2 MYGKCGILDDARKVFDRMPERNVVAWNSLMVGYVQNGMNEEAIRLLSDMMNEG------I 55
Query: 115 FPAWIIVCV-LKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADF 173
P + V L A +E GKQ H + G + L S++NFY K +E A+
Sbjct: 56 EPTRVTVSTCLSASAHMGGIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIECAEM 115
Query: 174 VFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDD 233
+F ++ + V W I ++G K M E +K + T S+++ A
Sbjct: 116 IFDKMIEKDVVTWNLLISGYVQQGLIEDAIYKCKLMRLENLKFDCVTISTLMSAAAHT-Q 174
Query: 234 DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
D N G+Q+ ++ LESD VDMY KC + DA++VF+ V K++ WN +L
Sbjct: 175 DLNLGKQLQCYCLRNSLESDIVSASTTVDMYAKCGRILDAKKVFDSTV-HKDLMLWNTLL 233
Query: 294 VGYIRNGLYVEATKFLYLMKASGI 317
Y + EA + Y M+ +
Sbjct: 234 AAYAESSHSGEALRLFYEMQLESV 257
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 89/180 (49%), Gaps = 18/180 (10%)
Query: 160 NFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSY 219
+ YGK L+DA VF ++ N V W + +V + G + +M E I+
Sbjct: 1 DMYGKCGILDDARKVFDRMPERNVVAWNSLMVGYVQNGMNEEAIRLLSDMMNEGIEPTRV 60
Query: 220 TFSSVLKAC---GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERV 276
T S+ L A GG+++ G+Q HA + GLE D + +++ Y K L+ AE +
Sbjct: 61 TVSTCLSASAHMGGIEE----GKQSHAIAIVNGLELDNILGTSILNFYCKVGLIECAEMI 116
Query: 277 FELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
F+ +++ K++ +WN ++ GY++ GL +A LM+ + +L+ C +IS
Sbjct: 117 FDKMIE-KDVVTWNLLISGYVQQGLIEDAIYKCKLMR----------LENLKFDCVTIST 165
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 64/284 (22%), Positives = 112/284 (39%), Gaps = 49/284 (17%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+ CG++ A+++FD +D W ++ Y + + E + LF EM + V
Sbjct: 204 MYAKCGRILDAKKVFDSTVHKDLMLWNTLLAAYAESSHSGEALRLFYEM------QLESV 257
Query: 115 FP---AW--IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
P +W II+ +L+ T + Q+ S IS
Sbjct: 258 TPNVISWNLIILSLLRXGQVTEAKXMFLQIQ--------STGIS---------------- 293
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
N + WT + + G+ + FK+M ++ N ++ + L AC
Sbjct: 294 -----------PNLISWTTLMNGLVQNGYSEEAIMYFKKMQESGLRPNPFSXTVALSACS 342
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEY-VQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
+ + GR +H I++ S ++ L+DMY KC + AERVF + +
Sbjct: 343 NL-ASLHFGRSIHGYIIRNQWHSGSVSLETSLLDMYAKCGDINKAERVFGNKL-YSELPL 400
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+NAM+ Y G EA ++A I+ +L AC+
Sbjct: 401 YNAMISAYGLYGKVEEAITLYRDLEALDIKPDNITFTNLLSACN 444
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 55/280 (19%), Positives = 108/280 (38%), Gaps = 44/280 (15%)
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI 119
G ++ A +FD+M +D +W ++I GYV ++ I ++M+ + L F
Sbjct: 108 GLIECAEMIFDKMIEKDVVTWNLLISGYVQQGLIEDAI-YKCKLMRLEN----LKFDCVT 162
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
I ++ A T ++ LGKQ+ + +I + ++ Y K + DA VF
Sbjct: 163 ISTLMSAAAHTQDLNLGKQLQCYCLRNSLESDIVSASTTVDMYAKCGRILDAKKVFDSTV 222
Query: 180 RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC---GGVDDDGN 236
+ ++W + H + F EM E + N +++ ++ + G V +
Sbjct: 223 HKDLMLWNTLLAAYAESSHSGEALRLFYEMQLESVTPNVISWNLIILSLLRXGQVTE--- 279
Query: 237 CGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGY 296
+ M I G+ N+ SW ++ G
Sbjct: 280 -AKXMFLQIQSTGI--------------------------------SPNLISWTTLMNGL 306
Query: 297 IRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
++NG EA + M+ SG++ ACS++++
Sbjct: 307 VQNGYSEEAIMYFKKMQESGLRPNPFSXTVALSACSNLAS 346
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 85/193 (44%), Gaps = 10/193 (5%)
Query: 41 NIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFN----SWAVMIVGYVDVADYQEC 96
++ P ++ N ++L + GQ+ A+ +F ++ + SW ++ G V +E
Sbjct: 256 SVTPNVISWNLIILSLLRXGQVTEAKXMFLQIQSTGISPNLISWTTLMNGLVQNGYSEEA 315
Query: 97 ITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFK-LGSSRNISLT 155
I F +M + L + L AC ++ G+ +HG + + S ++SL
Sbjct: 316 IMYFKKMQESG-----LRPNPFSXTVALSACSNLASLHFGRSIHGYIIRNQWHSGSVSLE 370
Query: 156 GSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIK 215
SL++ Y K + A+ VF ++ A I G + ++++ IK
Sbjct: 371 TSLLDMYAKCGDINKAERVFGNKLYSELPLYNAMISAYGLYGKVEEAITLYRDLEALDIK 430
Query: 216 KNSYTFSSVLKAC 228
++ TF+++L AC
Sbjct: 431 PDNITFTNLLSAC 443
>gi|410109985|gb|AFV61072.1| pentatricopeptide repeat-containing protein 81, partial [Lantana
cujabensis]
Length = 357
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 74/267 (27%), Positives = 133/267 (49%), Gaps = 10/267 (3%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMP-LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRK 107
LN + + CG ++ A+++FD RD +W ++ Y++ + +F EM+K++
Sbjct: 93 LNASITAYAECGCIEDAKRVFDSSDGYRDLVTWNSILAAYLEHNLEEYGFNIFLEMVKQR 152
Query: 108 KGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF-- 165
L A+ + ++ AC LGK +HGL K G + ++ +L++ Y K
Sbjct: 153 -----LEMDAYTLSSIISACFEDTQQSLGKSLHGLAIKKGLDQVTQISNALVSMYLKSNN 207
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
R +EDA +F + + V W + + G F+ + + + + YTF++VL
Sbjct: 208 RNVEDALKIFEHINIKDLVSWNTILTGLSQNGLSENALRLFQNIHLDHLVTDQYTFAAVL 267
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
++C + + GRQ+H +VK G E +EYV L+ MY KC ++ DA FE + K+
Sbjct: 268 RSCSDLAT-LHLGRQIHVLVVKSGFEGNEYVASALIFMYSKCGIIEDARESFESSL-KET 325
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLM 312
+WN+++ Y ++G A YLM
Sbjct: 326 SVTWNSIIFAYAQHGQGKIALDLFYLM 352
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 125/255 (49%), Gaps = 12/255 (4%)
Query: 59 CGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEM-MKRKKGHMLLVFPA 117
C ++ A ++F M R+ SW +I GY ++ + + C+ LF M M+ + P
Sbjct: 2 CRXVEDANKVFKYMRERNAVSWNALIGGYAEMGNLEXCVMLFVGMEMEGVRVDDATFAP- 60
Query: 118 WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVF-S 176
++ + A + +L +Q+HG + K G ++ + I Y + C+EDA VF S
Sbjct: 61 -LLTLLYDAEL----YDLMRQLHGKIMKRGLEHENTVLNASITAYAECGCIEDAKRVFDS 115
Query: 177 QLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGN 236
+ V W + + FN F EM ++R++ ++YT SS++ AC D +
Sbjct: 116 SDGYRDLVTWNSILAAYLEHNLEEYGFNIFLEMVKQRLEMDAYTLSSIISACFE-DTQQS 174
Query: 237 CGRQMHANIVKIGLESDEYVQCGLVDMYGKC--RLLRDAERVFELIVDKKNIASWNAMLV 294
G+ +H +K GL+ + LV MY K R + DA ++FE I + K++ SWN +L
Sbjct: 175 LGKSLHGLAIKKGLDQVTQISNALVSMYLKSNNRNVEDALKIFEHI-NIKDLVSWNTILT 233
Query: 295 GYIRNGLYVEATKFL 309
G +NGL A +
Sbjct: 234 GLSQNGLSENALRLF 248
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 68/138 (49%), Gaps = 1/138 (0%)
Query: 164 KFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSS 223
K R +EDA+ VF ++ N V W A I G+ F M E ++ + TF+
Sbjct: 1 KCRXVEDANKVFKYMRERNAVSWNALIGGYAEMGNLEXCVMLFVGMEMEGVRVDDATFAP 60
Query: 224 VLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
+L + + RQ+H I+K GLE + V + Y +C + DA+RVF+
Sbjct: 61 LLTLLYDAEL-YDLMRQLHGKIMKRGLEHENTVLNASITAYAECGCIEDAKRVFDSSDGY 119
Query: 284 KNIASWNAMLVGYIRNGL 301
+++ +WN++L Y+ + L
Sbjct: 120 RDLVTWNSILAAYLEHNL 137
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 73/168 (43%), Gaps = 9/168 (5%)
Query: 50 NRLLLMHVSCGQ--LDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRK 107
N L+ M++ ++ A ++F+ + ++D SW ++ G + + LF +
Sbjct: 196 NALVSMYLKSNNRNVEDALKIFEHINIKDLVSWNTILTGLSQNGLSENALRLFQNI---- 251
Query: 108 KGHM-LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166
H+ LV + VL++C + LG+Q+H L+ K G N + +LI Y K
Sbjct: 252 --HLDHLVTDQYTFAAVLRSCSDLATLHLGRQIHVLVVKSGFEGNEYVASALIFMYSKCG 309
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERI 214
+EDA F + +V W + I + G + F M RI
Sbjct: 310 IIEDARESFESSLKETSVTWNSIIFAYAQHGQGKIALDLFYLMTERRI 357
>gi|7523419|emb|CAB86438.1| putative protein [Arabidopsis thaliana]
Length = 1017
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/281 (29%), Positives = 134/281 (47%), Gaps = 11/281 (3%)
Query: 59 CGQLDTARQ--LFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP 116
CG+ Q +FDEMP R +W MI YV + + L+ M L FP
Sbjct: 90 CGKRRAVSQEKVFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFP 149
Query: 117 AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFS 176
A +LKAC ++ G ++H LL KLG + +L++ Y K L A +F
Sbjct: 150 A-----LLKACAKLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFD 204
Query: 177 QLK-RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDG 235
+ + + V+W + + + G + F+EM NSYT S L AC G
Sbjct: 205 GFQEKGDAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGF-SYA 263
Query: 236 NCGRQMHANIVKIGLESDE-YVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLV 294
G+++HA+++K S E YV L+ MY +C + AER+ + + ++ +WN+++
Sbjct: 264 KLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQM-NNADVVTWNSLIK 322
Query: 295 GYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
GY++N +Y EA +F M A+G + E + + A +S
Sbjct: 323 GYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLS 363
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 83/330 (25%), Positives = 149/330 (45%), Gaps = 12/330 (3%)
Query: 6 LPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTA 65
+P+ + L+K C +D EL + + ++ T +N L+ M+ L A
Sbjct: 141 VPLGLSSFPALLKACAKLRDIRSGSEL-HSLLVKLGYHSTGFIVNALVSMYAKNDDLSAA 199
Query: 66 RQLFDEMPLR-DFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCV 123
R+LFD + D W ++ Y E + LF EM HM P ++ IV
Sbjct: 200 RRLFDGFQEKGDAVLWNSILSSYSTSGKSLETLELFREM------HMTGPAPNSYTIVSA 253
Query: 124 LKACVCTMNMELGKQVHGLLFKLGS-SRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
L AC +LGK++H + K + S + + +LI Y + + A+ + Q+ +
Sbjct: 254 LTACDGFSYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNAD 313
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
V W + I + + + F +M K + + +S++ A G + + G ++H
Sbjct: 314 VVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNL-LAGMELH 372
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
A ++K G +S+ V L+DMY KC L R F L + K++ SW ++ GY +N +
Sbjct: 373 AYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAF-LRMHDKDLISWTTVIAGYAQNDCH 431
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIACS 332
VEA + + ++I E ++ + A S
Sbjct: 432 VEALELFRDVAKKRMEIDEMILGSILRASS 461
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 71/272 (26%), Positives = 128/272 (47%), Gaps = 8/272 (2%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L N L+ M+ CG++ A ++ +M D +W +I GYV Y+E + F++M+
Sbjct: 283 LYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMI- 341
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
GH + ++ A N+ G ++H + K G N+ + +LI+ Y K
Sbjct: 342 -AAGHKSDEVS---MTSIIAASGRLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKC 397
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
F ++ + + WT I + + F+++ ++R++ + S+L
Sbjct: 398 NLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSIL 457
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
+A V +++H +I++ GL D +Q LVD+YGKCR + A RVFE I K+
Sbjct: 458 RA-SSVLKSMLIVKEIHCHILRKGL-LDTVIQNELVDVYGKCRNMGYATRVFESI-KGKD 514
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGI 317
+ SW +M+ NG EA + M +G+
Sbjct: 515 VVSWTSMISSSALNGNESEAVELFRRMVETGL 546
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 74/177 (41%), Gaps = 2/177 (1%)
Query: 163 GKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFS 222
GK R + + VF ++ W I G + M E + +F
Sbjct: 91 GKRRAVSQ-EKVFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFP 149
Query: 223 SVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282
++LKAC + D G ++H+ +VK+G S ++ LV MY K L A R+F+ +
Sbjct: 150 ALLKACAKLRDI-RSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQE 208
Query: 283 KKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKI 339
K + WN++L Y +G +E + M +G I AC S +K+
Sbjct: 209 KGDAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKL 265
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 54/248 (21%), Positives = 110/248 (44%), Gaps = 9/248 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ ++ C + A ++F+ + +D SW MI + E + LF M++
Sbjct: 488 NELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRMVETG-- 545
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
L + ++C+L A + G+++H L + G S+ ++++ Y L+
Sbjct: 546 ---LSADSVALLCILSAAASLSALNKGREIHCYLLRKGFCLEGSIAVAVVDMYACCGDLQ 602
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC- 228
A VF +++R + +T+ I G F +M E + + +F ++L AC
Sbjct: 603 SAKAVFDRIERKGLLQYTSMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLALLYACS 662
Query: 229 -GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
G+ D+G ++ + ++ + YV C LVDM G+ + +A +++ +
Sbjct: 663 HAGLLDEGRGFLKIMEHEYELEPWPEHYV-C-LVDMLGRANCVVEAFEFVKMMKTEPTAE 720
Query: 288 SWNAMLVG 295
W A+L
Sbjct: 721 VWCALLAA 728
>gi|357437223|ref|XP_003588887.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355477935|gb|AES59138.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 697
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 84/282 (29%), Positives = 134/282 (47%), Gaps = 9/282 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ CGQL+ A ++F++MP + +W MI GY D CI LF M
Sbjct: 248 LVDMYGKCGQLEMAIEVFEQMPNKTVVAWNSMINGYGFKGDGISCIQLFKRMYSEG---- 303
Query: 112 LLVFPAWIIVCVLK-ACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
V P + AC + + GK VHG + + +I L SL++ Y K +E
Sbjct: 304 --VKPTLTTLTSTLMACSQSAQLLEGKFVHGYIIRNRIQPDIFLNSSLMDLYFKCGKVES 361
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
A+ +F + + TV W I EG F EM + ++ ++ TF+SVL AC
Sbjct: 362 AETIFKLMPKTTTVSWNVMISGYVTEGKLFDALRLFGEMSKSFVEPDAITFTSVLAACSQ 421
Query: 231 VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWN 290
+ GR++H IV+ L ++E V L+DMY KC + +A VF+ + ++++ SW
Sbjct: 422 LAALEK-GREIHNLIVERNLGNNEVVMGALLDMYAKCGAVEEAFGVFKCL-PERDLVSWT 479
Query: 291 AMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+M+ Y +G EA + M S ++ + ACS
Sbjct: 480 SMITAYGSHGRVYEALELFAEMLQSNVKPDRVTFLAILSACS 521
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/287 (26%), Positives = 133/287 (46%), Gaps = 7/287 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+ L+ M+ C + + A +LFDEMP +D W +I Y ++E + F MM+R
Sbjct: 145 SSLVGMYAKCNEFECAVKLFDEMPDKDVACWNTVISCYYQSGKFEEALRYFG-MMRR--- 200
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ I + +C ++++ G+++H L G + ++ +L++ YGK LE
Sbjct: 201 -FGFEPDSVTITTAISSCARLLDLDRGREIHKELVNSGFRMDSFVSAALVDMYGKCGQLE 259
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A VF Q+ V W + I +G FK M E +K T +S L AC
Sbjct: 260 MAIEVFEQMPNKTVVAWNSMINGYGFKGDGISCIQLFKRMYSEGVKPTLTTLTSTLMACS 319
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
G+ +H I++ ++ D ++ L+D+Y KC + AE +F+L+ K SW
Sbjct: 320 QSAQLLE-GKFVHGYIIRNRIQPDIFLNSSLMDLYFKCGKVESAETIFKLM-PKTTTVSW 377
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
N M+ GY+ G +A + M S ++ + ACS ++A
Sbjct: 378 NVMISGYVTEGKLFDALRLFGEMSKSFVEPDAITFTSVLAACSQLAA 424
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 80/283 (28%), Positives = 132/283 (46%), Gaps = 9/283 (3%)
Query: 52 LLLMHVSCGQLDTARQLFD--EMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
L+ ++VSC D A+ +FD E P + + ++ GY Y E + LF ++M
Sbjct: 44 LISLYVSCNLFDYAKNVFDVIENPF-EISLCNGLMAGYTRNCMYDEALGLFDKLM----C 98
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ L ++ VLKAC + LG+ +H L K G +I + SL+ Y K E
Sbjct: 99 YPCLKPDSYTYPSVLKACGGLRRVVLGQMIHTCLVKEGLMVDIVVGSSLVGMYAKCNEFE 158
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A +F ++ + W I + G F + F M R + +S T ++ + +C
Sbjct: 159 CAVKLFDEMPDKDVACWNTVISCYYQSGKFEEALRYFGMMRRFGFEPDSVTITTAISSCA 218
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ D GR++H +V G D +V LVDMYGKC L A VFE + + K + +W
Sbjct: 219 RLLDLDR-GREIHKELVNSGFRMDSFVSAALVDMYGKCGQLEMAIEVFEQMPN-KTVVAW 276
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
N+M+ GY G + + M + G++ + + +ACS
Sbjct: 277 NSMINGYGFKGDGISCIQLFKRMYSEGVKPTLTTLTSTLMACS 319
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 72/246 (29%), Positives = 116/246 (47%), Gaps = 13/246 (5%)
Query: 36 IRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQE 95
IR R I+P + + L+ ++ CG++++A +F MP SW VMI GYV +
Sbjct: 335 IRNR--IQPDIFLNSSLMDLYFKCGKVESAETIFKLMPKTTTVSWNVMISGYVTEGKLFD 392
Query: 96 CITLFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISL 154
+ LF EM K V P A VL AC +E G+++H L+ + N +
Sbjct: 393 ALRLFGEMSKS------FVEPDAITFTSVLAACSQLAALEKGREIHNLIVERNLGNNEVV 446
Query: 155 TGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERI 214
G+L++ Y K +E+A VF L + V WT+ I G ++ F EM + +
Sbjct: 447 MGALLDMYAKCGAVEEAFGVFKCLPERDLVSWTSMITAYGSHGRVYEALELFAEMLQSNV 506
Query: 215 KKNSYTFSSVLKAC--GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRD 272
K + TF ++L AC G+ DDG N+ I + E+ C L+ + G+ L +
Sbjct: 507 KPDRVTFLAILSACSHAGLVDDGLYHFNQMINVYGI-IPRIEHYSC-LITLLGRAGRLHE 564
Query: 273 AERVFE 278
A + +
Sbjct: 565 AYEILQ 570
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 41/68 (60%)
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYI 297
G+ +H +V +GL++D YV L+ +Y C L A+ VF++I + I+ N ++ GY
Sbjct: 22 GKVLHQKVVTLGLQNDVYVCKNLISLYVSCNLFDYAKNVFDVIENPFEISLCNGLMAGYT 81
Query: 298 RNGLYVEA 305
RN +Y EA
Sbjct: 82 RNCMYDEA 89
>gi|255541017|ref|XP_002511573.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550688|gb|EEF52175.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 954
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/283 (27%), Positives = 134/283 (47%), Gaps = 7/283 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+ L M+ CG + + ++F+++P++D SW MI G+ + + L +M+ +
Sbjct: 490 SSLFTMYSKCGSIGDSYKVFEQIPVKDNISWTSMISGFTEHGHAYQAFELLRKMLTERSK 549
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
F A +L A +++ GK++HG ++ + G+L+N Y K LE
Sbjct: 550 PDQTTFSA-----ILSAASSIHSLQKGKEIHGYAYRARLGDEALVGGALVNMYSKCGALE 604
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A +F L + V ++ + + G + F EM +S+ SSVL A
Sbjct: 605 SARKMFDLLAVKDQVSCSSLVSGYAQNGWLEEALLLFHEMLISNFTIDSFAVSSVLGAIA 664
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
G++ + G Q+HA++VK+GL+SD V LV +Y KC + D + F I D ++ SW
Sbjct: 665 GLNRL-DFGTQLHAHLVKLGLDSDVSVGSSLVTVYSKCGSIEDCWKAFNQI-DDADLISW 722
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
M+ ++G VEA K M+ GI+ + ACS
Sbjct: 723 TTMIASCAQHGKGVEALKIYEQMRREGIRPDSVTFVGVLSACS 765
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 81/300 (27%), Positives = 136/300 (45%), Gaps = 10/300 (3%)
Query: 34 NHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADY 93
H+ K + N LL + G L A ++FD +P ++ SW V+I GY + +
Sbjct: 73 THLIKTALFNSNTVVANSLLDWYCKSGALFYALKVFDTIPNKNVISWNVIISGYNRNSLF 132
Query: 94 QECITLFAEMMKRKKGHMLLVFPAWIIV-CVLKACVCTMNMELGKQVHGLLFKLGSSRNI 152
++ F+ M H P I CVL AC LG+QV+ L K G N
Sbjct: 133 EDSWRFFSMM------HFSGFDPNDITYGCVLSACAALETPNLGEQVYSLATKNGFYSNG 186
Query: 153 SLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRE 212
+ +I+ + DA VF + N V W + I + G + + F +M R
Sbjct: 187 HVRAGMIDLLARNGRFGDALRVFYDVSCENVVCWNSIISGAVKSGEYWIALDIFYQMSRR 246
Query: 213 RIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRD 272
+ NS+TFSS+L AC + ++ G+ + ++K D +V +V+MY KC + D
Sbjct: 247 FVVPNSFTFSSILTACASL-EEVELGKGIQGWVIKC-CAKDIFVGTAIVNMYAKCGDIVD 304
Query: 273 AERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
A + F + +N+ SW A++ G+I+ + A KF M+ + + + + AC+
Sbjct: 305 AVKEFSRM-PVRNVVSWTAIVSGFIKRDDSISALKFFKEMRKMKEETNKFTVTTVISACA 363
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/277 (24%), Positives = 127/277 (45%), Gaps = 11/277 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMP-LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGH 110
L+ M+ + ++ +F EM +++ W +MI + D Q I L +++++
Sbjct: 393 LINMYAKLHAISSSEMVFREMEGVKNPGIWTIMISSFAKNQDSQSAIDLLLKLLQQGLRP 452
Query: 111 MLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
C+ ++ LG+++H + K G ++S+ SL Y K + D
Sbjct: 453 DKF--------CLSSVLSVIDSLYLGREIHCYILKTGFVLDLSVGSSLFTMYSKCGSIGD 504
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
+ VF Q+ + + WT+ I GH +Q F ++M ER K + TFS++L A
Sbjct: 505 SYKVFEQIPVKDNISWTSMISGFTEHGHAYQAFELLRKMLTERSKPDQTTFSAILSAASS 564
Query: 231 VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWN 290
+ G+++H + L + V LV+MY KC L A ++F+L+ K + S +
Sbjct: 565 IHSLQK-GKEIHGYAYRARLGDEALVGGALVNMYSKCGALESARKMFDLLAVKDQV-SCS 622
Query: 291 AMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDL 327
+++ GY +NG EA + M S I ++ +
Sbjct: 623 SLVSGYAQNGWLEEALLLFHEMLISNFTIDSFAVSSV 659
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 100/211 (47%), Gaps = 17/211 (8%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R + L L+ M+ CG L++AR++FD + ++D S + ++ GY +E +
Sbjct: 580 RARLGDEALVGGALVNMYSKCGALESARKMFDLLAVKDQVSCSSLVSGYAQNGWLEEALL 639
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
LF EM+ ++ + VL A ++ G Q+H L KLG ++S+ SL
Sbjct: 640 LFHEMLISN-----FTIDSFAVSSVLGAIAGLNRLDFGTQLHAHLVKLGLDSDVSVGSSL 694
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
+ Y K +ED F+Q+ + + WT I + + G + +++M RE I+ +S
Sbjct: 695 VTVYSKCGSIEDCWKAFNQIDDADLISWTTMIASCAQHGKGVEALKIYEQMRREGIRPDS 754
Query: 219 YTFSSVLKACGGVDDDGNCGRQMHANIVKIG 249
TF VL AC HAN+V+ G
Sbjct: 755 VTFVGVLSACS------------HANLVEEG 773
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/240 (25%), Positives = 110/240 (45%), Gaps = 7/240 (2%)
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI 119
G+ A ++F ++ + W +I G V +Y + +F +M +R +V ++
Sbjct: 200 GRFGDALRVFYDVSCENVVCWNSIISGAVKSGEYWIALDIFYQMSRR-----FVVPNSFT 254
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
+L AC +ELGK + G + K +++I + +++N Y K + DA FS++
Sbjct: 255 FSSILTACASLEEVELGKGIQGWVIKC-CAKDIFVGTAIVNMYAKCGDIVDAVKEFSRMP 313
Query: 180 RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGR 239
N V WTA + + FKEM + + + N +T ++V+ AC
Sbjct: 314 VRNVVSWTAIVSGFIKRDDSISALKFFKEMRKMKEETNKFTVTTVISACAKPHFIKE-AI 372
Query: 240 QMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRN 299
Q+H I+K G D V L++MY K + +E VF + KN W M+ + +N
Sbjct: 373 QIHCWILKTGYYLDPVVGAALINMYAKLHAISSSEMVFREMEGVKNPGIWTIMISSFAKN 432
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 54/102 (52%), Gaps = 2/102 (1%)
Query: 239 RQMHANIVKIGL-ESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYI 297
+ +H +++K L S+ V L+D Y K L A +VF+ I +K N+ SWN ++ GY
Sbjct: 69 KVIHTHLIKTALFNSNTVVANSLLDWYCKSGALFYALKVFDTIPNK-NVISWNVIISGYN 127
Query: 298 RNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKI 339
RN L+ ++ +F +M SG + + AC+++ +
Sbjct: 128 RNSLFEDSWRFFSMMHFSGFDPNDITYGCVLSACAALETPNL 169
>gi|242056803|ref|XP_002457547.1| hypothetical protein SORBIDRAFT_03g009160 [Sorghum bicolor]
gi|241929522|gb|EES02667.1| hypothetical protein SORBIDRAFT_03g009160 [Sorghum bicolor]
Length = 762
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/290 (27%), Positives = 143/290 (49%), Gaps = 15/290 (5%)
Query: 33 LNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVAD 92
L+ + ++ +++ N LL + G + AR++F EMP RD ++ MI+G
Sbjct: 155 LHPVVTKLGFGASVVVCNTLLDAYCKQGFIAAARRVFLEMPHRDSITYNAMIMGCSRQGR 214
Query: 93 YQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNI 152
+ E + LFA M + F + +L +++ LG+Q+HGL + S N+
Sbjct: 215 HGEALELFAAMRREGVDTSHFTFSS-----LLTVATGMVDLHLGRQIHGLFVRANPSCNV 269
Query: 153 SLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIV----NNCREGHFHQVFNDFKE 208
+ +L++FY K L D +F ++ + V + I N C G Q+F D +
Sbjct: 270 FVNNALLDFYSKCDSLGDLKQLFDEMSERDNVSYNVMISACSWNRC-GGMALQLFRDMQT 328
Query: 209 MGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCR 268
+G +R + ++S+L G + GRQ+HA ++ GL +++V L+DMY KC
Sbjct: 329 LGFDR---RTLPYASLLSVAGALPHI-KIGRQIHAQLILHGLTLEDFVGNALIDMYSKCG 384
Query: 269 LLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
+L A+ +F DK I SW A++ G ++NG EA + M+ +G+
Sbjct: 385 MLDAAKTIFAYKSDKTAI-SWTALITGCVQNGQNEEALQLFCDMRRAGLS 433
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/283 (27%), Positives = 124/283 (43%), Gaps = 15/283 (5%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQEC-- 96
R N + N LL + C L +QLFDEM RD S+ VMI + C
Sbjct: 262 RANPSCNVFVNNALLDFYSKCDSLGDLKQLFDEMSERDNVSYNVMI----SACSWNRCGG 317
Query: 97 --ITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISL 154
+ LF +M L + + +L ++++G+Q+H L G + +
Sbjct: 318 MALQLFRDMQTLGFDRRTLPYAS-----LLSVAGALPHIKIGRQIHAQLILHGLTLEDFV 372
Query: 155 TGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERI 214
+LI+ Y K L+ A +F+ + WTA I + G + F +M R +
Sbjct: 373 GNALIDMYSKCGMLDAAKTIFAYKSDKTAISWTALITGCVQNGQNEEALQLFCDMRRAGL 432
Query: 215 KKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAE 274
+ T SS++K+ + G GRQ+HA + K G + L+DMY KC L +A
Sbjct: 433 SPDRATCSSIMKSSSSLAVIG-IGRQLHAYLTKSGHMPSVFSGSALLDMYAKCGCLDEAI 491
Query: 275 RVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGI 317
R F + +K +I +WNA++ Y + G A + M G+
Sbjct: 492 RTFNEMPEKNSI-TWNAVISAYAQYGQAKNAIRMFDSMLHCGL 533
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/267 (25%), Positives = 129/267 (48%), Gaps = 13/267 (4%)
Query: 27 AGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVG 86
A A ++L+ + ++ + L FLNR+LL L A+ LF R+ +W +M+
Sbjct: 54 AAARKVLDQVPEKSTL--YLRFLNRILLGCSRSCDLSAAKALFSAAARRNAKTWTIMMRM 111
Query: 87 YVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKL 146
+ ++LF +M++ + V I VL C + +H ++ KL
Sbjct: 112 LPADGRGSDAVSLFRDMLREGEASPDDV----TITTVLNVPGCDVG-----TLHPVVTKL 162
Query: 147 GSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDF 206
G ++ + +L++ Y K + A VF ++ +++ + A I+ R+G + F
Sbjct: 163 GFGASVVVCNTLLDAYCKQGFIAAARRVFLEMPHRDSITYNAMIMGCSRQGRHGEALELF 222
Query: 207 KEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGK 266
M RE + + +TFSS+L G+ D + GRQ+H V+ + +V L+D Y K
Sbjct: 223 AAMRREGVDTSHFTFSSLLTVATGM-VDLHLGRQIHGLFVRANPSCNVFVNNALLDFYSK 281
Query: 267 CRLLRDAERVFELIVDKKNIASWNAML 293
C L D +++F+ + ++ N+ S+N M+
Sbjct: 282 CDSLGDLKQLFDEMSERDNV-SYNVMI 307
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 82/181 (45%), Gaps = 7/181 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ CG LD A+ +F + SW +I G V +E + LF +M R+ G
Sbjct: 374 NALIDMYSKCGMLDAAKTIFAYKSDKTAISWTALITGCVQNGQNEEALQLFCDM--RRAG 431
Query: 110 HMLLVFPAWIIVCVLKACVCTMN-MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+ P + ++ + +G+Q+H L K G ++ +L++ Y K CL
Sbjct: 432 ----LSPDRATCSSIMKSSSSLAVIGIGRQLHAYLTKSGHMPSVFSGSALLDMYAKCGCL 487
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
++A F+++ N++ W A I + G F M + + TF SVL AC
Sbjct: 488 DEAIRTFNEMPEKNSITWNAVISAYAQYGQAKNAIRMFDSMLHCGLCPDPVTFLSVLAAC 547
Query: 229 G 229
G
Sbjct: 548 G 548
>gi|115485519|ref|NP_001067903.1| Os11g0482400 [Oryza sativa Japonica Group]
gi|77550880|gb|ABA93677.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
gi|113645125|dbj|BAF28266.1| Os11g0482400 [Oryza sativa Japonica Group]
Length = 770
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/299 (27%), Positives = 146/299 (48%), Gaps = 27/299 (9%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECI----TLFAEMMK 105
N L ++ G LD+A + F +P ++ +W MI A+ +EC+ +LF +M+
Sbjct: 218 NSLCSLYAKLGSLDSALRAFWRIPEKNVITWTTMISA---CAEDEECVELGMSLFIDML- 273
Query: 106 RKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
M V P + + V+ C +++ LGKQV FK+G N+ + S + Y +
Sbjct: 274 -----MDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFKIGCETNLPVKNSTMYLYLR 328
Query: 165 FRCLEDADFVFSQLKRHNTVVWTA------KIVNNCRE-----GHFHQVFNDFKEMGRER 213
++A +F Q++ + + W A +I+++ ++ Q F+++ R
Sbjct: 329 KGETDEAMRLFEQMEDASIITWNAMISGYAQIMDSAKDDLQARSRGFQALTIFRDLKRSV 388
Query: 214 IKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDA 273
+K + +TFSS+L C + G Q+HA +K G SD V LV+MY KC ++DA
Sbjct: 389 MKPDLFTFSSILSVCSAMMALEQ-GEQIHAQTIKSGFLSDVVVNSALVNMYNKCGCIQDA 447
Query: 274 ERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+ F L + + +W +M+ GY ++G EA + M+ +G++ E L ACS
Sbjct: 448 NKAF-LEMPTRTFVTWTSMISGYSQHGQPQEAIQLFEEMRLAGVRPNEITFVSLLSACS 505
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 80/294 (27%), Positives = 143/294 (48%), Gaps = 13/294 (4%)
Query: 8 ITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQ 67
+ + MY L+ C + S GA ++ + + L+ ++ C AR+
Sbjct: 76 VQSAMYVPLLHRCV-ETGSLGAARAVHGHMAKTGASADMFVATSLVNAYMRCSAARDARR 134
Query: 68 LFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPA-WIIVCVLKA 126
LFD MP R+ +W ++ GY + + +F EM++ + +P+ + + L A
Sbjct: 135 LFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGR------YPSHYTLGATLNA 188
Query: 127 CVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVW 186
C+ + +++LGKQVHG K G+ S+ SL + Y K L+ A F ++ N + W
Sbjct: 189 CLASCDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITW 248
Query: 187 TAKIVNNCREGH--FHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHAN 244
T +++ C E + F +M + + N +T +SV+ C G D N G+Q+ A
Sbjct: 249 TT-MISACAEDEECVELGMSLFIDMLMDGVMPNEFTLTSVMSLC-GTRLDLNLGKQVQAF 306
Query: 245 IVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIR 298
KIG E++ V+ + +Y + +A R+FE + D +I +WNAM+ GY +
Sbjct: 307 SFKIGCETNLPVKNSTMYLYLRKGETDEAMRLFEQMED-ASIITWNAMISGYAQ 359
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/304 (24%), Positives = 133/304 (43%), Gaps = 25/304 (8%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQ---- 94
++ + L N + +++ G+ D A +LF++M +W MI GY + D
Sbjct: 309 KIGCETNLPVKNSTMYLYLRKGETDEAMRLFEQMEDASIITWNAMISGYAQIMDSAKDDL 368
Query: 95 -------ECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLG 147
+ +T+F ++ + L F + +L C M +E G+Q+H K G
Sbjct: 369 QARSRGFQALTIFRDLKRSVMKPDLFTFSS-----ILSVCSAMMALEQGEQIHAQTIKSG 423
Query: 148 SSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFK 207
++ + +L+N Y K C++DA+ F ++ V WT+ I + G + F+
Sbjct: 424 FLSDVVVNSALVNMYNKCGCIQDANKAFLEMPTRTFVTWTSMISGYSQHGQPQEAIQLFE 483
Query: 208 EMGRERIKKNSYTFSSVLKAC--GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYG 265
EM ++ N TF S+L AC G+ ++ M I D Y C ++DM+
Sbjct: 484 EMRLAGVRPNEITFVSLLSACSYAGLVEEAEHYFDMMKKEYCIEPVVDHY-GC-MIDMFV 541
Query: 266 KCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG----LYVEATKFLYLMKASGIQIQE 321
+ + DA + + N A W++++ G +G + A K L L K GI+
Sbjct: 542 RLGRVEDAFSFIKRTGFEPNEAIWSSLVAGCRSHGNMELAFYAADKLLEL-KPKGIETYI 600
Query: 322 SLIN 325
L+N
Sbjct: 601 LLLN 604
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 236 NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
R +H ++ K G +D +V LV+ Y +C RDA R+F+ + ++ N+ +W A++ G
Sbjct: 95 GAARAVHGHMAKTGASADMFVATSLVNAYMRCSAARDARRLFDGMPER-NVVTWTALVTG 153
Query: 296 YIRN 299
Y N
Sbjct: 154 YTLN 157
>gi|356519887|ref|XP_003528600.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Glycine max]
Length = 813
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 84/288 (29%), Positives = 140/288 (48%), Gaps = 10/288 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVAD-YQECITLFAEMMKRKK 108
N LL + +CG A ++FDEMP RD SW ++G + Y+E + F M+ K
Sbjct: 176 NTLLAFYGNCGLFGDAMKVFDEMPERDKVSWNT-VIGLCSLHGFYEEALGFFRVMVAAKP 234
Query: 109 GHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGS-SRNISLTGSLINFYGKFR 166
G + P + +V VL C T + + + VH K+G ++ + +L++ YGK
Sbjct: 235 G----IQPDLVTVVSVLPVCAETEDKVMARIVHCYALKVGLLGGHVKVGNALVDVYGKCG 290
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
+ + VF ++ N + W A I + G + + F+ M E ++ NS T SS+L
Sbjct: 291 SEKASKKVFDEIDERNVISWNAIITSFSFRGKYMDALDVFRLMIDEGMRPNSVTISSMLP 350
Query: 227 ACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
G + G ++H +K+ +ESD ++ L+DMY K R A +F + +NI
Sbjct: 351 VLGEL-GLFKLGMEVHGFSLKMAIESDVFISNSLIDMYAKSGSSRIASTIFNKM-GVRNI 408
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
SWNAM+ + RN L EA + + M+A G ++ AC+ +
Sbjct: 409 VSWNAMIANFARNRLEYEAVELVRQMQAKGETPNNVTFTNVLPACARL 456
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 134/270 (49%), Gaps = 10/270 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ ++ CG ++++FDE+ R+ SW +I + Y + + +F M+
Sbjct: 280 NALVDVYGKCGSEKASKKVFDEIDERNVISWNAIITSFSFRGKYMDALDVFRLMIDEG-- 337
Query: 110 HMLLVFPAWIIVCVLKACVCTMNM-ELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+ P + + + + + + +LG +VHG K+ ++ ++ SLI+ Y K
Sbjct: 338 ----MRPNSVTISSMLPVLGELGLFKLGMEVHGFSLKMAIESDVFISNSLIDMYAKSGSS 393
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
A +F+++ N V W A I N R ++ ++M + N+ TF++VL AC
Sbjct: 394 RIASTIFNKMGVRNIVSWNAMIANFARNRLEYEAVELVRQMQAKGETPNNVTFTNVLPAC 453
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
+ N G+++HA I+++G D +V L DMY KC L A+ VF + V ++ S
Sbjct: 454 ARLGFL-NVGKEIHARIIRVGSSLDLFVSNALTDMYSKCGCLNLAQNVFNISV--RDEVS 510
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
+N +++GY R +E+ + M+ G++
Sbjct: 511 YNILIIGYSRTNDSLESLRLFSEMRLLGMR 540
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 73/294 (24%), Positives = 134/294 (45%), Gaps = 8/294 (2%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
++ I+ + N L+ M+ G A +F++M +R+ SW MI + E +
Sbjct: 370 KMAIESDVFISNSLIDMYAKSGSSRIASTIFNKMGVRNIVSWNAMIANFARNRLEYEAVE 429
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
L +M + + + F VL AC + +GK++H + ++GSS ++ ++ +L
Sbjct: 430 LVRQMQAKGETPNNVTF-----TNVLPACARLGFLNVGKEIHARIIRVGSSLDLFVSNAL 484
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
+ Y K CL A VF+ + + V + I+ R + F EM ++ +
Sbjct: 485 TDMYSKCGCLNLAQNVFN-ISVRDEVSYNILIIGYSRTNDSLESLRLFSEMRLLGMRPDI 543
Query: 219 YTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE 278
+F V+ AC + G+++H +V+ + +V L+D+Y +C + A +VF
Sbjct: 544 VSFMGVVSACANLAFIRQ-GKEIHGLLVRKLFHTHLFVANSLLDLYTRCGRIDLATKVFY 602
Query: 279 LIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
I K++ASWN M++GY G A MK G++ + ACS
Sbjct: 603 CI-QNKDVASWNTMILGYGMRGELDTAINLFEAMKEDGVEYDSVSFVAVLSACS 655
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 106/209 (50%), Gaps = 7/209 (3%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
VLK C + + G++VHG+ FKLG ++ + +L+ FYG DA VF ++ +
Sbjct: 143 VLKVCSDFVEVRKGREVHGVAFKLGFDGDVFVGNTLLAFYGNCGLFGDAMKVFDEMPERD 202
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEM--GRERIKKNSYTFSSVLKACGGVDDDGNCGRQ 240
V W I G + + F+ M + I+ + T SVL C +D R
Sbjct: 203 KVSWNTVIGLCSLHGFYEEALGFFRVMVAAKPGIQPDLVTVVSVLPVCAETEDK-VMARI 261
Query: 241 MHANIVKIGLESDEYVQCG--LVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIR 298
+H +K+GL +V+ G LVD+YGKC + +++VF+ I D++N+ SWNA++ +
Sbjct: 262 VHCYALKVGLLGG-HVKVGNALVDVYGKCGSEKASKKVFDEI-DERNVISWNAIITSFSF 319
Query: 299 NGLYVEATKFLYLMKASGIQIQESLINDL 327
G Y++A LM G++ I+ +
Sbjct: 320 RGKYMDALDVFRLMIDEGMRPNSVTISSM 348
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 75/286 (26%), Positives = 134/286 (46%), Gaps = 24/286 (8%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
RV L N L M+ CG L+ A+ +F+ + +RD S+ ++I+GY D E +
Sbjct: 471 RVGSSLDLFVSNALTDMYSKCGCLNLAQNVFN-ISVRDEVSYNILIIGYSRTNDSLESLR 529
Query: 99 LFAEMMKRKKGHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGS 157
LF+EM +L + P + + V+ AC + GK++HGLL + ++ + S
Sbjct: 530 LFSEM------RLLGMRPDIVSFMGVVSACANLAFIRQGKEIHGLLVRKLFHTHLFVANS 583
Query: 158 LINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKN 217
L++ Y + ++ A VF ++ + W I+ G N F+ M + ++ +
Sbjct: 584 LLDLYTRCGRIDLATKVFYCIQNKDVASWNTMILGYGMRGELDTAINLFEAMKEDGVEYD 643
Query: 218 SYTFSSVLKAC--GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAER 275
S +F +VL AC GG+ + GR+ + + +E +VD+ G+ L+ +A
Sbjct: 644 SVSFVAVLSACSHGGLIEK---GRKYFKMMCDLNIEPTHTHYACMVDLLGRAGLMEEAAD 700
Query: 276 VFE--LIVDKKNIASWNAMLV-----GYIRNGLYVEATKFLYLMKA 314
+ I+ NI W A+L G I GL+ A + L+ +K
Sbjct: 701 LIRGLSIIPDTNI--WGALLGACRIHGNIELGLW--AAEHLFELKP 742
>gi|308080264|ref|NP_001183681.1| uncharacterized protein LOC100502275 [Zea mays]
gi|238013832|gb|ACR37951.1| unknown [Zea mays]
gi|413938826|gb|AFW73377.1| hypothetical protein ZEAMMB73_579690 [Zea mays]
Length = 745
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 88/338 (26%), Positives = 142/338 (42%), Gaps = 42/338 (12%)
Query: 35 HIRKR----VNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDV 90
H R R P L N LL LD LF M RD S+ +I G+
Sbjct: 57 HARARRVFDATPHPNLFTYNALLSTLAHARLLDDMDSLFASMAQRDTVSYNAVIAGFSGG 116
Query: 91 ADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTM-NMELGKQVHGLLFKLGSS 149
+ + L+ +++ V P+ I + + + + LG+Q H + +LG
Sbjct: 117 GAHARAVRLYHTLLRAGSS----VRPSRITMSAMVMAASALGDRALGRQFHCQILRLGFG 172
Query: 150 RNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVV------------------------ 185
N + L+ Y K + DA VF ++ N V+
Sbjct: 173 VNAFVGSPLVGMYAKMGLIGDAKRVFDEMDGKNVVMYNTMITGLLRCKMVEEARRLFEVM 232
Query: 186 -------WTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCG 238
WT + + G Q N F+ M + I + YTF S+L ACG + G
Sbjct: 233 TDRDCITWTTMVTGFTQNGLESQALNFFRRMRFQGIAIDQYTFGSILTACGALSALEQ-G 291
Query: 239 RQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIR 298
+Q+HA I++ + + +V LVDMY KCR ++ AE F + KNI SW A++VGY +
Sbjct: 292 KQIHAYIIRTHYDDNVFVGSALVDMYSKCRSIKPAETAFRRM-SCKNIISWTALIVGYGQ 350
Query: 299 NGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
NG EA + M+ GI + + + +C+++++
Sbjct: 351 NGCSEEAVRVFSEMQRDGIDPDDFTLGSVISSCANLAS 388
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 130/287 (45%), Gaps = 7/287 (2%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
++ N ++ + C ++ AR+LF+ M RD +W M+ G+ + + F M
Sbjct: 206 VVMYNTMITGLLRCKMVEEARRLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRM-- 263
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
R +G + + +L AC +E GKQ+H + + N+ + +L++ Y K
Sbjct: 264 RFQG---IAIDQYTFGSILTACGALSALEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKC 320
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
R ++ A+ F ++ N + WTA IV + G + F EM R+ I + +T SV+
Sbjct: 321 RSIKPAETAFRRMSCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDFTLGSVI 380
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
+C + G Q H + GL V LV +YGKC + DA R+F+ ++
Sbjct: 381 SSCANLASLEE-GAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMLFHDQ 439
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+ SW A++ GY + G E M A ++ + ACS
Sbjct: 440 V-SWTALVTGYAQFGRAKETIDLFEKMLAKDVKPDGVTFIGVLSACS 485
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 114/248 (45%), Gaps = 17/248 (6%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ C + A F M ++ SW +IVGY +E + +F+EM +
Sbjct: 313 LVDMYSKCRSIKPAETAFRRMSCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDG---- 368
Query: 112 LLVFPA-WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
+ P + + V+ +C ++E G Q H L G I+++ +L+ YGK +ED
Sbjct: 369 --IDPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIED 426
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC-- 228
A +F ++ H+ V WTA + + G + + F++M + +K + TF VL AC
Sbjct: 427 AHRLFDEMLFHDQVSWTALVTGYAQFGRAKETIDLFEKMLAKDVKPDGVTFIGVLSACSR 486
Query: 229 GGVDDDGNC---GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
G + G Q IV I D++ C ++D+Y + L++AE + + +
Sbjct: 487 AGFVEKGCSYFHSMQKDHGIVPI----DDHYTC-MIDLYSRSGRLKEAEEFIKQMPMHPD 541
Query: 286 IASWNAML 293
W +L
Sbjct: 542 AIGWGTLL 549
>gi|15242550|ref|NP_196557.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170796|sp|Q9FIB2.1|PP373_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g09950
gi|9758973|dbj|BAB09416.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332004087|gb|AED91470.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 995
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 87/317 (27%), Positives = 151/317 (47%), Gaps = 25/317 (7%)
Query: 5 CLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVN-IKPTLLFLNRLLLMHVSCGQLD 63
C+P++ ++ C + +A F H R N + + N L+ ++ G
Sbjct: 4 CVPLS------FVQSCVGHRGAARFF----HSRLYKNRLDKDVYLCNNLINAYLETGDSV 53
Query: 64 TARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCV 123
+AR++FDEMPLR+ SWA ++ GY +++E + +M+K + + V V
Sbjct: 54 SARKVFDEMPLRNCVSWACIVSGYSRNGEHKEALVFLRDMVKEG-----IFSNQYAFVSV 108
Query: 124 LKAC--VCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADF---VFSQL 178
L+AC + ++ + G+Q+HGL+FKL + + ++ LI+ Y ++C+ + F +
Sbjct: 109 LRACQEIGSVGILFGRQIHGLMFKLSYAVDAVVSNVLISMY--WKCIGSVGYALCAFGDI 166
Query: 179 KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSS-VLKACGGVDDDGNC 237
+ N+V W + I + G F F M + + YTF S V AC + D
Sbjct: 167 EVKNSVSWNSIISVYSQAGDQRSAFRIFSSMQYDGSRPTEYTFGSLVTTACSLTEPDVRL 226
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYI 297
Q+ I K GL +D +V GLV + K L A +VF + + +N + N ++VG +
Sbjct: 227 LEQIMCTIQKSGLLTDLFVGSGLVSAFAKSGSLSYARKVFNQM-ETRNAVTLNGLMVGLV 285
Query: 298 RNGLYVEATKFLYLMKA 314
R EATK M +
Sbjct: 286 RQKWGEEATKLFMDMNS 302
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 80/287 (27%), Positives = 137/287 (47%), Gaps = 7/287 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ CG + AR++F M +D SW MI G D C E K +
Sbjct: 353 NGLVNMYAKCGSIADARRVFYFMTDKDSVSWNSMITGL----DQNGCFIEAVERYKSMRR 408
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
H +L ++ ++ L +C +LG+Q+HG KLG N+S++ +L+ Y + L
Sbjct: 409 HDILP-GSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLN 467
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCR-EGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+ +FS + H+ V W + I R E + F R K N TFSSVL A
Sbjct: 468 ECRKIFSSMPEHDQVSWNSIIGALARSERSLPEAVVCFLNAQRAGQKLNRITFSSVLSAV 527
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
G G+Q+H +K + + + L+ YGKC + E++F + ++++ +
Sbjct: 528 S-SLSFGELGKQIHGLALKNNIADEATTENALIACYGKCGEMDGCEKIFSRMAERRDNVT 586
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
WN+M+ GYI N L +A ++ M +G ++ + + A +S++
Sbjct: 587 WNSMISGYIHNELLAKALDLVWFMLQTGQRLDSFMYATVLSAFASVA 633
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 80/270 (29%), Positives = 125/270 (46%), Gaps = 11/270 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVAD--YQECITLFAEMMKRK 107
N L+ ++ G L+ R++F MP D SW I+G + ++ E + F +
Sbjct: 454 NALMTLYAETGYLNECRKIFSSMPEHDQVSWNS-IIGALARSERSLPEAVVCFLNAQRAG 512
Query: 108 KGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
+ + F + VL A ELGKQ+HGL K + + +LI YGK
Sbjct: 513 QKLNRITFSS-----VLSAVSSLSFGELGKQIHGLALKNNIADEATTENALIACYGKCGE 567
Query: 168 LEDADFVFSQL-KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
++ + +FS++ +R + V W + I + + M + + +S+ +++VL
Sbjct: 568 MDGCEKIFSRMAERRDNVTWNSMISGYIHNELLAKALDLVWFMLQTGQRLDSFMYATVLS 627
Query: 227 ACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
A V G ++HA V+ LESD V LVDMY KC L A R F + +N
Sbjct: 628 AFASVATLER-GMEVHACSVRACLESDVVVGSALVDMYSKCGRLDYALRFFN-TMPVRNS 685
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASG 316
SWN+M+ GY R+G EA K MK G
Sbjct: 686 YSWNSMISGYARHGQGEEALKLFETMKLDG 715
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/245 (24%), Positives = 113/245 (46%), Gaps = 12/245 (4%)
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI 119
G L AR++F++M R+ + ++VG V +E LF +M M+ V P
Sbjct: 257 GSLSYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDM-----NSMIDVSPESY 311
Query: 120 IVCVLKACVCTMNMELG----KQVHGLLFKLG-SSRNISLTGSLINFYGKFRCLEDADFV 174
++ + ++ E+G ++VHG + G + + L+N Y K + DA V
Sbjct: 312 VILLSSFPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRV 371
Query: 175 FSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDD 234
F + ++V W + I + G F + +K M R I S+T S L +C +
Sbjct: 372 FYFMTDKDSVSWNSMITGLDQNGCFIEAVERYKSMRRHDILPGSFTLISSLSSCASL-KW 430
Query: 235 GNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLV 294
G+Q+H +K+G++ + V L+ +Y + L + ++F + + + SWN+++
Sbjct: 431 AKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQV-SWNSIIG 489
Query: 295 GYIRN 299
R+
Sbjct: 490 ALARS 494
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 69/162 (42%), Gaps = 12/162 (7%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R ++ ++ + L+ M+ CG+LD A + F+ MP+R+ SW MI GY +E +
Sbjct: 647 RACLESDVVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALK 706
Query: 99 LFAEMM---KRKKGHMLLVFPAWIIVCVLKACVCTMNMELG-KQVHGLLFKLGSSRNISL 154
LF M + H+ V VL AC +E G K + G + I
Sbjct: 707 LFETMKLDGQTPPDHV-------TFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEH 759
Query: 155 TGSLINFYGKFRCLED-ADFVFSQLKRHNTVVWTAKIVNNCR 195
+ + G+ L+ DF+ + N ++W + CR
Sbjct: 760 FSCMADVLGRAGELDKLEDFIEKMPMKPNVLIWRTVLGACCR 801
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Query: 237 CGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGY 296
R H+ + K L+ D Y+ L++ Y + A +VF+ + +N SW ++ GY
Sbjct: 19 AARFFHSRLYKNRLDKDVYLCNNLINAYLETGDSVSARKVFDEM-PLRNCVSWACIVSGY 77
Query: 297 IRNGLYVEATKFLYLMKASGI-QIQESLINDLRIACSSISASKI 339
RNG + EA FL M GI Q + ++ LR AC I + I
Sbjct: 78 SRNGEHKEALVFLRDMVKEGIFSNQYAFVSVLR-ACQEIGSVGI 120
>gi|125577145|gb|EAZ18367.1| hypothetical protein OsJ_33897 [Oryza sativa Japonica Group]
Length = 730
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/299 (27%), Positives = 146/299 (48%), Gaps = 27/299 (9%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECI----TLFAEMMK 105
N L ++ G LD+A + F +P ++ +W MI A+ +EC+ +LF +M+
Sbjct: 178 NSLCSLYAKLGSLDSALRAFWRIPEKNVITWTTMISA---CAEDEECVELGMSLFIDML- 233
Query: 106 RKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
M V P + + V+ C +++ LGKQV FK+G N+ + S + Y +
Sbjct: 234 -----MDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFKIGCETNLPVKNSTMYLYLR 288
Query: 165 FRCLEDADFVFSQLKRHNTVVWTA------KIVNNCRE-----GHFHQVFNDFKEMGRER 213
++A +F Q++ + + W A +I+++ ++ Q F+++ R
Sbjct: 289 KGETDEAMRLFEQMEDASIITWNAMISGYAQIMDSAKDDLQARSRGFQALTIFRDLKRSV 348
Query: 214 IKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDA 273
+K + +TFSS+L C + G Q+HA +K G SD V LV+MY KC ++DA
Sbjct: 349 MKPDLFTFSSILSVCSAMMALEQ-GEQIHAQTIKSGFLSDVVVNSALVNMYNKCGCIQDA 407
Query: 274 ERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+ F L + + +W +M+ GY ++G EA + M+ +G++ E L ACS
Sbjct: 408 NKAF-LEMPTRTFVTWTSMISGYSQHGQPQEAIQLFEEMRLAGVRPNEITFVSLLSACS 465
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 71/237 (29%), Positives = 123/237 (51%), Gaps = 12/237 (5%)
Query: 65 ARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPA-WIIVCV 123
AR+LFD MP R+ +W ++ GY + + +F EM++ + +P+ + +
Sbjct: 92 ARRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGR------YPSHYTLGAT 145
Query: 124 LKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNT 183
L AC+ + +++LGKQVHG K G+ S+ SL + Y K L+ A F ++ N
Sbjct: 146 LNACLASCDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNV 205
Query: 184 VVWTAKIVNNCREGH--FHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQM 241
+ WT +++ C E + F +M + + N +T +SV+ C G D N G+Q+
Sbjct: 206 ITWTT-MISACAEDEECVELGMSLFIDMLMDGVMPNEFTLTSVMSLC-GTRLDLNLGKQV 263
Query: 242 HANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIR 298
A KIG E++ V+ + +Y + +A R+FE + D +I +WNAM+ GY +
Sbjct: 264 QAFSFKIGCETNLPVKNSTMYLYLRKGETDEAMRLFEQMED-ASIITWNAMISGYAQ 319
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 74/304 (24%), Positives = 133/304 (43%), Gaps = 25/304 (8%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQ---- 94
++ + L N + +++ G+ D A +LF++M +W MI GY + D
Sbjct: 269 KIGCETNLPVKNSTMYLYLRKGETDEAMRLFEQMEDASIITWNAMISGYAQIMDSAKDDL 328
Query: 95 -------ECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLG 147
+ +T+F ++ + L F + +L C M +E G+Q+H K G
Sbjct: 329 QARSRGFQALTIFRDLKRSVMKPDLFTFSS-----ILSVCSAMMALEQGEQIHAQTIKSG 383
Query: 148 SSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFK 207
++ + +L+N Y K C++DA+ F ++ V WT+ I + G + F+
Sbjct: 384 FLSDVVVNSALVNMYNKCGCIQDANKAFLEMPTRTFVTWTSMISGYSQHGQPQEAIQLFE 443
Query: 208 EMGRERIKKNSYTFSSVLKAC--GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYG 265
EM ++ N TF S+L AC G+ ++ M I D Y C ++DM+
Sbjct: 444 EMRLAGVRPNEITFVSLLSACSYAGLVEEAEHYFDMMKKEYCIEPVVDHY-GC-MIDMFV 501
Query: 266 KCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG----LYVEATKFLYLMKASGIQIQE 321
+ + DA + + N A W++++ G +G + A K L L K GI+
Sbjct: 502 RLGRVEDAFSFIKRTGFEPNEAIWSSLVAGCRSHGNMELAFYAADKLLEL-KPKGIETYI 560
Query: 322 SLIN 325
L+N
Sbjct: 561 LLLN 564
>gi|297814916|ref|XP_002875341.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297321179|gb|EFH51600.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 659
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 91/339 (26%), Positives = 165/339 (48%), Gaps = 13/339 (3%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNR-LLLMHVSC 59
M L L T + C IK C+ D + H + V + +F++ L++M+ +C
Sbjct: 67 MRKLSLYPTRSSFPCAIKACSSLLDIFSGKQ--THQQAFVFGYQSDIFVSSALIVMYSTC 124
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMM-KRKKGHMLLVFPAW 118
G+L+ AR++FDE+P R+ SW MI GY + + ++LF +++ + + +
Sbjct: 125 GKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLIEENDDDATMFLDSM 184
Query: 119 IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF--RCLEDADFVFS 176
+V V+ AC L + +H + K G R +S+ +L++ Y K + A +F
Sbjct: 185 GMVSVISACSRVAAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFD 244
Query: 177 QLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKK-NSYTFSSVLKACGGVDDDG 235
Q+ + V + + + + G ++ F+ F+ + +E++ N T S+VL A V G
Sbjct: 245 QIVDKDRVSYNSIMSVYAQSGMSNEAFDVFRRLIKEKVVTFNCITLSTVLLA---VSHSG 301
Query: 236 --NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
G+ +H ++++GLE D V ++DMY KC + A F+ + KN+ SW AM+
Sbjct: 302 ALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARLAFDRM-KNKNVRSWTAMI 360
Query: 294 VGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
GY +G +A + M SG++ + ACS
Sbjct: 361 AGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACS 399
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 107/238 (44%), Gaps = 15/238 (6%)
Query: 76 DFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMEL 135
D SW +I D E + F+ M K FP C +KAC +++
Sbjct: 40 DVFSWNSVIADLARSGDSAEALRAFSSMRKLSLYPTRSSFP-----CAIKACSSLLDIFS 94
Query: 136 GKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCR 195
GKQ H F G +I ++ +LI Y LEDA VF ++ + N V WT+ I
Sbjct: 95 GKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDL 154
Query: 196 EGHFHQVFNDFKEMGRERIKKNSYTF------SSVLKACGGVDDDGNCGRQMHANIVKIG 249
G+ + FK++ E ++ F SV+ AC V G +H+ ++K G
Sbjct: 155 NGNALDAVSLFKDLLIEENDDDATMFLDSMGMVSVISACSRVAAKG-LTESIHSFVIKRG 213
Query: 250 LESDEYVQCGLVDMYGKCRL--LRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEA 305
+ V L+D Y K + A ++F+ IVDK + S+N+++ Y ++G+ EA
Sbjct: 214 FDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRV-SYNSIMSVYAQSGMSNEA 270
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 110/239 (46%), Gaps = 10/239 (4%)
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI 119
G + AR++FD++ +D S+ ++ Y E +F ++K K ++ F
Sbjct: 234 GGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFDVFRRLIKEK----VVTFNCIT 289
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
+ VL A + + +GK +H + ++G ++ + S+I+ Y K +E A F ++K
Sbjct: 290 LSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARLAFDRMK 349
Query: 180 RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--GGVDDDGNC 237
N WTA I GH + F M ++ N TF SVL AC G+ D G
Sbjct: 350 NKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHDVG-- 407
Query: 238 GRQMHANIVKIGLESD-EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
+A + G+E E+ C +VD+ G+ L+ A + + + + + W+++L
Sbjct: 408 WHWFNAMKGRFGVEPGLEHYGC-MVDLLGRAGFLQKAYDLIQKMKMEPDSIIWSSLLAA 465
>gi|302787545|ref|XP_002975542.1| hypothetical protein SELMODRAFT_103455 [Selaginella moellendorffii]
gi|300156543|gb|EFJ23171.1| hypothetical protein SELMODRAFT_103455 [Selaginella moellendorffii]
Length = 678
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 86/321 (26%), Positives = 152/321 (47%), Gaps = 16/321 (4%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCG 60
++N C+ I+ Y LIK Q S + ++H + ++++ L + LL M++ CG
Sbjct: 4 LENHCVGISR--YVRLIKHYA-QSKSLAEGKCIHHQVRTLDLEGNLSIGSSLLKMYLQCG 60
Query: 61 QLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWII 120
LD AR F M L + SW I + Y E + +F M + + V P I
Sbjct: 61 SLDGARVAFSRMDLTEPESWNAAIAAFAQEGHYSEAMKVFERMKE-----LGSVAPNSIT 115
Query: 121 VC----VLKACVCTM-NMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVF 175
+ VLK ++ + +++H + + + SL+ YG+F CL +A+ +F
Sbjct: 116 IVTVLNVLKLLPLDFKSLAIAREIHTTIVAKKKEMDACVATSLMGLYGRFGCLPEAESIF 175
Query: 176 SQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDG 235
L + V W+ I G F+EM E +K N F +VL A G D
Sbjct: 176 QSLGFKDRVSWSVMISAYAHNGRKDLALGFFREMQFEGMKPNQIVFVNVLNALGSPGDLL 235
Query: 236 NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
+ G ++H+ +++ G+++ + L+ MYG+C + RVF + K++ SWN+M+
Sbjct: 236 D-GERIHSLVIQAGMQNKVILATALITMYGRCGSPSASIRVFRR-TNPKDLISWNSMIGA 293
Query: 296 YIRNGLYVEATK-FLYLMKAS 315
Y NG + ++ + F L+KA+
Sbjct: 294 YAHNGEFEKSMRIFHQLLKAT 314
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/259 (24%), Positives = 111/259 (42%), Gaps = 7/259 (2%)
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI 119
G L A +F + +D SW+VMI Y + F EM +VF
Sbjct: 166 GCLPEAESIFQSLGFKDRVSWSVMISAYAHNGRKDLALGFFREMQFEGMKPNQIVF---- 221
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
V VL A ++ G+++H L+ + G + L +LI YG+ + VF +
Sbjct: 222 -VNVLNALGSPGDLLDGERIHSLVIQAGMQNKVILATALITMYGRCGSPSASIRVFRRTN 280
Query: 180 RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRER-IKKNSYTFSSVLKACGGVDDDGNCG 238
+ + W + I G F + F ++ + + N TF ++L G +++
Sbjct: 281 PKDLISWNSMIGAYAHNGEFEKSMRIFHQLLKATYVAPNRVTFLTLLGGLGTSNENARHA 340
Query: 239 RQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIR 298
+ + I GL +D V L+ YGKC +A R+F+ I + +N+ SWN+M+ Y
Sbjct: 341 KVVEREITSRGLGTDAVVATALMSAYGKCGHAGEAHRIFDGI-EPRNVVSWNSMISAYAH 399
Query: 299 NGLYVEATKFLYLMKASGI 317
+ + A + M G+
Sbjct: 400 SHRHELALDLYHRMLHEGV 418
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 68/288 (23%), Positives = 127/288 (44%), Gaps = 17/288 (5%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
+ ++ ++ L+ M+ CG + ++F +D SW MI Y ++++ +
Sbjct: 246 QAGMQNKVILATALITMYGRCGSPSASIRVFRRTNPKDLISWNSMIGAYAHNGEFEKSMR 305
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN--MELGKQVHGLLFKLGSSRNISLTG 156
+F +++K V P + L + T N K V + G + +
Sbjct: 306 IFHQLLK-----ATYVAPNRVTFLTLLGGLGTSNENARHAKVVEREITSRGLGTDAVVAT 360
Query: 157 SLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFND-FKEMGRERIK 215
+L++ YGK +A +F ++ N V W + +++ H H++ D + M E +
Sbjct: 361 ALMSAYGKCGHAGEAHRIFDGIEPRNVVSWNS-MISAYAHSHRHELALDLYHRMLHEGVN 419
Query: 216 KNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAER 275
TF + L AC + D G+ + + + GLE D + +VDMYGKC LR A
Sbjct: 420 PTMVTFVAALGACSELADVAEGGKIL-SCVTDSGLELDHVLGTAVVDMYGKCGNLRRARE 478
Query: 276 VFELIVDKKNIASWNAMLVGYIRNG-----LYVEATKFLYLMKASGIQ 318
+F+ + KK++ W+A+ Y G L+ A K + M+ G+
Sbjct: 479 IFDGM-KKKDVVVWSALAAAYSHRGNDRSQLHT-ALKVFHWMQQEGVH 524
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 94/207 (45%), Gaps = 9/207 (4%)
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
V ++K + ++ GK +H + L N+S+ SL+ Y + L+ A FS++
Sbjct: 15 VRLIKHYAQSKSLAEGKCIHHQVRTLDLEGNLSIGSSLLKMYLQCGSLDGARVAFSRMDL 74
Query: 181 HNTVVWTAKIVNNCREGHFHQ---VFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC 237
W A I +EGH+ + VF KE+G + NS T +VL + D
Sbjct: 75 TEPESWNAAIAAFAQEGHYSEAMKVFERMKELGS--VAPNSITIVTVLNVLKLLPLDFKS 132
Query: 238 ---GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLV 294
R++H IV E D V L+ +YG+ L +AE +F+ + K + SW+ M+
Sbjct: 133 LAIAREIHTTIVAKKKEMDACVATSLMGLYGRFGCLPEAESIFQSLGFKDRV-SWSVMIS 191
Query: 295 GYIRNGLYVEATKFLYLMKASGIQIQE 321
Y NG A F M+ G++ +
Sbjct: 192 AYAHNGRKDLALGFFREMQFEGMKPNQ 218
>gi|449449950|ref|XP_004142727.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g47840-like [Cucumis sativus]
Length = 712
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/268 (29%), Positives = 125/268 (46%), Gaps = 14/268 (5%)
Query: 35 HIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQ 94
H +V++ N L + V L AR LFD++P RD SW +I GYV+ +D
Sbjct: 42 HFSNKVDLAEA----NNQLKILVKTNHLKDARDLFDQLPQRDEVSWTNIISGYVNSSDSS 97
Query: 95 ECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISL 154
E + LF++M + + L +++ LK C +N G +HG K G ++ +
Sbjct: 98 EALRLFSKMRLQSE----LRIDPFLLSLGLKTCGLGLNYLYGTNLHGFSVKTGLVNSVFV 153
Query: 155 TGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERI 214
+L++ Y K + + VF ++ N V WTA I R G+ F MGR ++
Sbjct: 154 GSALLDMYMKIGEIGRSCKVFDEMPTRNAVTWTAVITGLVRAGYSEAGLAYFSGMGRSKV 213
Query: 215 KKNSYTFSSVLKACGGVDDDG--NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRD 272
+ +SY ++ LKA D G N GR +H +K G + + +V L MY KC L
Sbjct: 214 EYDSYAYAIALKASA---DSGALNHGRSIHTQTLKKGFDENSFVANSLTTMYNKCGKLDY 270
Query: 273 AERVFELIVDKKNIASWNAMLVGYIRNG 300
F + ++ SW ++ YI+ G
Sbjct: 271 GLHTFRKM-RTLDVVSWTTIVTAYIQMG 297
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 74/284 (26%), Positives = 125/284 (44%), Gaps = 9/284 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L M+ CG+LD F +M D SW ++ Y+ + + F M
Sbjct: 256 NSLTTMYNKCGKLDYGLHTFRKMRTLDVVSWTTIVTAYIQMGKEDCGLQAFKRMRASN-- 313
Query: 110 HMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
V P + V+ C ++ G+Q+H + +G +S+ S++ Y K L
Sbjct: 314 ----VIPNEYTFSAVISCCANFARLKWGEQLHAHVLCVGFVNALSVANSIMTLYSKCGEL 369
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
VF +K + + W+ I + G+ + F M E K N + +SVL C
Sbjct: 370 ASVSKVFCSMKFRDIITWSTIIAAYSQVGYGEEAFEYLSRMRSEGPKPNEFALASVLSVC 429
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
G + G+Q+HA+++ +GLE V L+ MY KC + +A ++F + K +I S
Sbjct: 430 GSMAILEQ-GKQLHAHVLSVGLEQTSMVCSALIIMYAKCGSIAEASKIF-MDSWKDDIIS 487
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
W AM+ GY +G EA + ++ G++ + ACS
Sbjct: 488 WTAMISGYAEHGHSQEAIELFENIQKVGLRPDSVTFIGVLTACS 531
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 60/257 (23%), Positives = 108/257 (42%), Gaps = 31/257 (12%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N ++ ++ CG+L + ++F M RD +W+ +I Y V +E + M R +G
Sbjct: 357 NSIMTLYSKCGELASVSKVFCSMKFRDIITWSTIIAAYSQVGYGEEAFEYLSRM--RSEG 414
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
F + VL C +E GKQ+H + +G + + +LI Y K +
Sbjct: 415 PKPNEFA---LASVLSVCGSMAILEQGKQLHAHVLSVGLEQTSMVCSALIIMYAKCGSIA 471
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
+A +F + + + WTA I GH + F+ + + ++ +S TF VL AC
Sbjct: 472 EASKIFMDSWKDDIISWTAMISGYAEHGHSQEAIELFENIQKVGLRPDSVTFIGVLTACS 531
Query: 230 GVDDDGNCGRQMHANIVKIGL-------------ESDEYVQCGLVDMYGKCRLLRDAERV 276
HA +V +G S E+ C ++D+ + L DAE +
Sbjct: 532 ------------HAGMVDLGFYYFNSMSKDYHITPSKEHYGC-MIDLLCRAGRLHDAETL 578
Query: 277 FELIVDKKNIASWNAML 293
+ + + W+ +L
Sbjct: 579 IRSMPIQWDDVVWSTLL 595
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 86/209 (41%), Gaps = 39/209 (18%)
Query: 40 VNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITL 99
V ++ T + + L++M+ CG + A ++F + D SW MI GY + QE I L
Sbjct: 448 VGLEQTSMVCSALIIMYAKCGSIAEASKIFMDSWKDDIISWTAMISGYAEHGHSQEAIEL 507
Query: 100 FAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLI 159
F + K + L + + VL AC ++LG
Sbjct: 508 FENIQK-----VGLRPDSVTFIGVLTACSHAGMVDLG----------------------- 539
Query: 160 NFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSY 219
FY F + D+ + K H + I CR G H + M I+ +
Sbjct: 540 -FY-YFNSMSK-DYHITPSKEH----YGCMIDLLCRAGRLHDAETLIRSM---PIQWDDV 589
Query: 220 TFSSVLKACGGVDDDGNCGRQMHANIVKI 248
+S++L+AC + D +CG++ A ++K+
Sbjct: 590 VWSTLLRAC-RIHGDVDCGQRAAAEVLKL 617
>gi|302783475|ref|XP_002973510.1| hypothetical protein SELMODRAFT_99647 [Selaginella moellendorffii]
gi|300158548|gb|EFJ25170.1| hypothetical protein SELMODRAFT_99647 [Selaginella moellendorffii]
Length = 675
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 87/321 (27%), Positives = 151/321 (47%), Gaps = 16/321 (4%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCG 60
++N C+ I+ Y LIK C K A + +R ++++ L + LL M++ CG
Sbjct: 4 LENQCVGISR--YVSLIKHCAQSKSLAEGKCIHQQVRT-LDLEGNLSIGSSLLKMYLQCG 60
Query: 61 QLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI- 119
LD AR F M L + SW I + Y E + +F M + + V P I
Sbjct: 61 SLDGARVAFTRMDLTEPESWNAAIAAFAQEGHYSEAMKVFERMKE-----LGSVAPNSIT 115
Query: 120 IVCVLKACVCTM----NMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVF 175
IV VL ++ + +++H + + + SL++ YG+F CL +A+ +F
Sbjct: 116 IVTVLNVLKLLPLDFKSLAIAREIHTTILAKKKEMDACVATSLMSLYGRFGCLPEAESIF 175
Query: 176 SQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDG 235
L + V W+ I G F+EM E +K N F +VL A G D
Sbjct: 176 QSLGFKDRVSWSVMISAYAHNGRKDLALGFFREMQFEGMKPNQIVFVNVLNALGSPGDLL 235
Query: 236 NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
+ G ++H+ +++ G+++ + L+ MYG+C + RVF + K++ WN+M+
Sbjct: 236 D-GERIHSLVIQAGMQNKVILATALITMYGRCGSPAASIRVFRR-TNPKDLILWNSMIGA 293
Query: 296 YIRNGLYVEATK-FLYLMKAS 315
Y NG + ++ + F L+KA+
Sbjct: 294 YAHNGEFEKSMRIFHQLLKAA 314
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 115/266 (43%), Gaps = 8/266 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ ++ G L A +F + +D SW+VMI Y + F EM
Sbjct: 158 LMSLYGRFGCLPEAESIFQSLGFKDRVSWSVMISAYAHNGRKDLALGFFREMQFEGMKPN 217
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+VF V VL A ++ G+++H L+ + G + L +LI YG+ +
Sbjct: 218 QIVF-----VNVLNALGSPGDLLDGERIHSLVIQAGMQNKVILATALITMYGRCGSPAAS 272
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
VF + + ++W + I G F + F ++ + N TF ++L G
Sbjct: 273 IRVFRRTNPKDLILWNSMIGAYAHNGEFEKSMRIFHQL--LKAAPNRVTFLTLLGGLGTS 330
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
+++ + + I GL +D V LV YGKC +A R+F+ I + +N+ SWN+
Sbjct: 331 NENARHAKVVEREITSRGLGTDAVVATALVSAYGKCGHAGEARRIFDGI-EPRNVVSWNS 389
Query: 292 MLVGYIRNGLYVEATKFLYLMKASGI 317
M+ Y + + A + M G+
Sbjct: 390 MISAYAHSHRHELALDLYHRMLHEGV 415
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/295 (22%), Positives = 128/295 (43%), Gaps = 18/295 (6%)
Query: 31 ELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDV 90
E ++ + + ++ ++ L+ M+ CG + ++F +D W MI Y
Sbjct: 238 ERIHSLVIQAGMQNKVILATALITMYGRCGSPAASIRVFRRTNPKDLILWNSMIGAYAHN 297
Query: 91 ADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN--MELGKQVHGLLFKLGS 148
++++ + +F +++K P + L + T N K V + G
Sbjct: 298 GEFEKSMRIFHQLLK--------AAPNRVTFLTLLGGLGTSNENARHAKVVEREITSRGL 349
Query: 149 SRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFND-FK 207
+ + +L++ YGK +A +F ++ N V W + +++ H H++ D +
Sbjct: 350 GTDAVVATALVSAYGKCGHAGEARRIFDGIEPRNVVSWNS-MISAYAHSHRHELALDLYH 408
Query: 208 EMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKC 267
M E + TF + L AC + D G+ + + + G E D + +VDMYGKC
Sbjct: 409 RMLHEGVNPTVVTFVAALGACSELADVAEGGKII-SCVTDSGFELDHVLGTAVVDMYGKC 467
Query: 268 RLLRDAERVFELIVDKKNIASWNAMLVGYIRNGL----YVEATKFLYLMKASGIQ 318
LR A +F+ + KK++ W+A+ Y +G A K + M+ G++
Sbjct: 468 GNLRRAREIFDGM-KKKDVVVWSALAAAYSHHGTDRSQLHTALKVFHWMQQEGVR 521
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 95/207 (45%), Gaps = 9/207 (4%)
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
V ++K C + ++ GK +H + L N+S+ SL+ Y + L+ A F+++
Sbjct: 15 VSLIKHCAQSKSLAEGKCIHQQVRTLDLEGNLSIGSSLLKMYLQCGSLDGARVAFTRMDL 74
Query: 181 HNTVVWTAKIVNNCREGHFHQ---VFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC 237
W A I +EGH+ + VF KE+G + NS T +VL + D
Sbjct: 75 TEPESWNAAIAAFAQEGHYSEAMKVFERMKELGS--VAPNSITIVTVLNVLKLLPLDFKS 132
Query: 238 ---GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLV 294
R++H I+ E D V L+ +YG+ L +AE +F+ + K + SW+ M+
Sbjct: 133 LAIAREIHTTILAKKKEMDACVATSLMSLYGRFGCLPEAESIFQSLGFKDRV-SWSVMIS 191
Query: 295 GYIRNGLYVEATKFLYLMKASGIQIQE 321
Y NG A F M+ G++ +
Sbjct: 192 AYAHNGRKDLALGFFREMQFEGMKPNQ 218
>gi|449502685|ref|XP_004161713.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g47840-like [Cucumis
sativus]
Length = 712
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/268 (29%), Positives = 125/268 (46%), Gaps = 14/268 (5%)
Query: 35 HIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQ 94
H +V++ N L + V L AR LFD++P RD SW +I GYV+ +D
Sbjct: 42 HFSNKVDLAEA----NNQLKILVKTNHLKDARDLFDQLPQRDEVSWTNIISGYVNSSDSS 97
Query: 95 ECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISL 154
E + LF++M + + L +++ LK C +N G +HG K G ++ +
Sbjct: 98 EALRLFSKMRLQSE----LRIDPFLLSLGLKTCGLGLNYLYGTNLHGFSVKXGLVNSVFV 153
Query: 155 TGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERI 214
+L++ Y K + + VF ++ N V WTA I R G+ F MGR ++
Sbjct: 154 GSALLDMYMKIGEIGRSCKVFDEMPTRNAVTWTAVITGLVRAGYSEAGLAYFSGMGRSKV 213
Query: 215 KKNSYTFSSVLKACGGVDDDG--NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRD 272
+ +SY ++ LKA D G N GR +H +K G + + +V L MY KC L
Sbjct: 214 EYDSYAYAIALKASA---DSGALNHGRSIHTQTLKKGFDENSFVANSLTTMYNKCGKLDY 270
Query: 273 AERVFELIVDKKNIASWNAMLVGYIRNG 300
F + ++ SW ++ YI+ G
Sbjct: 271 GLHTFRKM-RTLDVVSWTTIVTAYIQMG 297
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 74/284 (26%), Positives = 125/284 (44%), Gaps = 9/284 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L M+ CG+LD F +M D SW ++ Y+ + + F M
Sbjct: 256 NSLTTMYNKCGKLDYGLHTFRKMRTLDVVSWTTIVTAYIQMGKEDCGLQAFKRMRASN-- 313
Query: 110 HMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
V P + V+ C ++ G+Q+H + +G +S+ S++ Y K L
Sbjct: 314 ----VIPNEYTFSAVISCCANFARLKWGEQLHAHVLCVGFVNALSVANSIMTLYSKCGEL 369
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
VF +K + + W+ I + G+ + F M E K N + +SVL C
Sbjct: 370 ASVSKVFCSMKFRDIITWSTIIAAYSQVGYGEEAFEYLSRMRSEGPKPNEFALASVLSVC 429
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
G + G+Q+HA+++ +GLE V L+ MY KC + +A ++F + K +I S
Sbjct: 430 GSMAILEQ-GKQLHAHVLSVGLEQTSMVCSALIIMYAKCGSIAEASKIF-MDSWKDDIIS 487
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
W AM+ GY +G EA + ++ G++ + ACS
Sbjct: 488 WTAMISGYAEHGHSQEAIELFENIQKVGLRPDSVTFIGVLTACS 531
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 60/257 (23%), Positives = 108/257 (42%), Gaps = 31/257 (12%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N ++ ++ CG+L + ++F M RD +W+ +I Y V +E + M R +G
Sbjct: 357 NSIMTLYSKCGELASVSKVFCSMKFRDIITWSTIIAAYSQVGYGEEAFEYLSRM--RSEG 414
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
F + VL C +E GKQ+H + +G + + +LI Y K +
Sbjct: 415 PKPNEFA---LASVLSVCGSMAILEQGKQLHAHVLSVGLEQTSMVCSALIIMYAKCGSIA 471
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
+A +F + + + WTA I GH + F+ + + ++ +S TF VL AC
Sbjct: 472 EASKIFMDSWKDDIISWTAMISGYAEHGHSQEAIELFENIQKVGLRPDSVTFIGVLTACS 531
Query: 230 GVDDDGNCGRQMHANIVKIGL-------------ESDEYVQCGLVDMYGKCRLLRDAERV 276
HA +V +G S E+ C ++D+ + L DAE +
Sbjct: 532 ------------HAGMVDLGFYYFNSMSKDYHITPSKEHYGC-MIDLLCRAGRLHDAETL 578
Query: 277 FELIVDKKNIASWNAML 293
+ + + W+ +L
Sbjct: 579 IRSMPIQWDDVVWSTLL 595
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 86/209 (41%), Gaps = 39/209 (18%)
Query: 40 VNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITL 99
V ++ T + + L++M+ CG + A ++F + D SW MI GY + QE I L
Sbjct: 448 VGLEQTSMVCSALIIMYAKCGSIAEASKIFMDSWKDDIISWTAMISGYAEHGHSQEAIEL 507
Query: 100 FAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLI 159
F + K + L + + VL AC ++LG
Sbjct: 508 FENIQK-----VGLRPDSVTFIGVLTACSHAGMVDLG----------------------- 539
Query: 160 NFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSY 219
FY F + D+ + K H + I CR G H + M I+ +
Sbjct: 540 -FY-YFNSMSK-DYHITPSKEH----YGCMIDLLCRAGRLHDAETLIRSM---PIQWDDV 589
Query: 220 TFSSVLKACGGVDDDGNCGRQMHANIVKI 248
+S++L+AC + D +CG++ A ++K+
Sbjct: 590 VWSTLLRAC-RIHGDVDCGQRAAAEVLKL 617
>gi|147804706|emb|CAN64870.1| hypothetical protein VITISV_041329 [Vitis vinifera]
Length = 629
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/268 (29%), Positives = 135/268 (50%), Gaps = 16/268 (5%)
Query: 73 PLRDFNSWA--VMIVGYVDVADYQECITLFAEMMKRKKGHML--LVFPAWIIVCVLKACV 128
P + N +A +I G++ +E + +M R +G M FP C +KAC+
Sbjct: 98 PTHEINVFAFNAIISGFITNGFPEEGFEFYQKM--RNEGVMPDKFTFP-----CAIKACL 150
Query: 129 CTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTA 188
+ + K++HGLLFK G ++ + +L+N Y KF +E A F +L + V+W A
Sbjct: 151 DVLEI---KKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNA 207
Query: 189 KIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKI 248
+ + G F V F+ M E + + +T + L V D N GR +H +K+
Sbjct: 208 MVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGXLSVF-AVMGDLNNGRIIHGFAMKM 266
Query: 249 GLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKF 308
G +S V L+DMYGKC+ + DA +FE++ +K+I SWN+++ + + G + +
Sbjct: 267 GYDSGVAVSNSLIDMYGKCKCIEDALEIFEMM-REKDIFSWNSIVSVHEQCGDHDGTLRL 325
Query: 309 LYLMKASGIQIQESLINDLRIACSSISA 336
L M +GIQ + + ACS ++A
Sbjct: 326 LDRMLGAGIQPDLVTVTTVLPACSHLAA 353
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 75/280 (26%), Positives = 133/280 (47%), Gaps = 15/280 (5%)
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI 119
G ++ A+ F+E+P+RD W M+ GY + ++ + F M V P+
Sbjct: 185 GLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDES------VVPSRF 238
Query: 120 IVCVLKACVCTM-NMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL 178
V + M ++ G+ +HG K+G ++++ SLI+ YGK +C+EDA +F +
Sbjct: 239 TVTGXLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMM 298
Query: 179 KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCG 238
+ + W + + + + G M I+ + T ++VL AC + + G
Sbjct: 299 REKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMH-G 357
Query: 239 RQMHANIVKIGLESDE------YVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAM 292
R++H ++ GL D ++ ++DMY KC +RDA VFE + K++ASWN M
Sbjct: 358 REIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERM-SNKDVASWNIM 416
Query: 293 LVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
++GY +G EA + M ++ E + ACS
Sbjct: 417 IMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACS 456
Score = 44.3 bits (103), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 75/165 (45%), Gaps = 15/165 (9%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
+L N ++ M+ CG + A +F+ M +D SW +MI+GY E + +F+ M +
Sbjct: 379 VLLKNAVIDMYAKCGSMRDAHLVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCE 438
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLT----GSLINF 161
+ + F V VL AC + G+ L ++ S +++ T +I+
Sbjct: 439 VQLKPDEVTF-----VGVLSACSHAGFVSQGRN---FLVQMKSKYDVAPTIEHYTCVIDM 490
Query: 162 YGKFRCLEDA-DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFND 205
G+ L++A + + N VVW A ++ CR H H V +
Sbjct: 491 LGRAGQLDEAYELALTMPIEANPVVWRA-LLAACRL-HKHAVLAE 533
>gi|147842436|emb|CAN71830.1| hypothetical protein VITISV_033606 [Vitis vinifera]
Length = 799
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 84/317 (26%), Positives = 148/317 (46%), Gaps = 12/317 (3%)
Query: 8 ITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQ 67
++++ Y LI+ C K + E+ H+ +P+L+ LN +++M+ G +
Sbjct: 52 LSSETYLSLIRSCIKFKAFSQGREIHKHMVN-AGFEPSLVLLNNIMIMYSKFGDFGETFK 110
Query: 68 LFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKAC 127
+F+ M R+ SW VMI D ++ I L+ +M+ ++P VLK+C
Sbjct: 111 VFEGMDERNLFSWTVMIGACSKNGDAEKAIELYGKMISSGVKADCFLYP-----LVLKSC 165
Query: 128 VCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWT 187
++ G+ VHG + G ++ + SLI+ Y K + D++ VF ++ + + WT
Sbjct: 166 GAVKDLRRGQCVHGEVLITGLLGDVVVMNSLIDMYMKCEMVGDSERVFDEMDVRDVITWT 225
Query: 188 AKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDG--NCGRQMHANI 245
IV + G + KEM +++ +S T + VL D G +Q+H
Sbjct: 226 TMIVGYMQMGRGLEGLELLKEMLSSQVRPSSATLAGVLPL---FSDLGYLKLAKQIHGLA 282
Query: 246 VKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEA 305
G E +++V LVD+Y C L VF+ V +K+++ WN M+ Y++ L EA
Sbjct: 283 AVTGFEYEKHVGTALVDVYANCGGLYFGRLVFDR-VKEKDVSCWNTMIKSYVQANLSDEA 341
Query: 306 TKFLYLMKASGIQIQES 322
L M GI +S
Sbjct: 342 ISLLKFMHLDGIHPVKS 358
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 71/316 (22%), Positives = 121/316 (38%), Gaps = 47/316 (14%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEM----MKRK 107
L+ ++ +CG L R +FD + +D + W MI YV E I+L M +
Sbjct: 297 LVDVYANCGGLYFGRLVFDRVKEKDVSCWNTMIKSYVQANLSDEAISLLKFMHLDGIHPV 356
Query: 108 KGHMLLVFPAW------------IIVCVLKACVCT---------------MNMELGKQVH 140
K FP + +I C+ A V N+ K++H
Sbjct: 357 KSTWYCFFPHYSKSKFSIHKFLKLIKCLEHAGVKPGVVPDTLLDQMXENVENVGQVKELH 416
Query: 141 GLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFH 200
+ G N S+ SL Y KF LE A +FS L W + + G+ +
Sbjct: 417 LFFKRSGGISNSSVGSSLXRMYSKFAVLEPAQEIFSCLGVKELDXWNSILACYAHNGYAN 476
Query: 201 QVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLES-DEYVQCG 259
+ F +M + I+ N ++++++ V D + LE+ E
Sbjct: 477 KASELFNKMRKTGIEPNVRSWNTLIAGFVDVGD------------FEAALETFSEMKWTN 524
Query: 260 LVDMYGKCRLLRDAERVF---ELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASG 316
Y K L +A R+F E+ + N +W ++ GY + GL E+ K ++ G
Sbjct: 525 QRPNYWKGGFLXEASRIFHEMEVAGIEGNTITWTTLVAGYAQXGLXDESLKHFRELQLKG 584
Query: 317 IQIQESLINDLRIACS 332
++ I + AC+
Sbjct: 585 LKPNSITIASILPACA 600
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 75/351 (21%), Positives = 129/351 (36%), Gaps = 81/351 (23%)
Query: 29 AFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL-------------- 74
A EL N +RK I+P + N L+ V G + A + F EM
Sbjct: 478 ASELFNKMRK-TGIEPNVRSWNTLIAGFVDVGDFEAALETFSEMKWTNQRPNYWKGGFLX 536
Query: 75 ---RDFN------------SWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI 119
R F+ +W ++ GY E + F E+ + KG L +
Sbjct: 537 EASRIFHEMEVAGIEGNTITWTTLVAGYAQXGLXDESLKHFREL--QLKG---LKPNSIT 591
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
I +L AC + + GK +HG+L S G + + F + D +
Sbjct: 592 IASILPACAQSATLSHGKSIHGVL------SACSQAGMVNEGWEHFNNM-DPKYGLIPTG 644
Query: 180 RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGR 239
+H T + ++ R G F N +M ++ + + ++L AC
Sbjct: 645 KHYTCI--VDLLG--RAGLFEDARNFIFQMS---LQPTASLWGALLSAC----------- 686
Query: 240 QMHANIVKIGLESDEYVQCG---------LVDMYGKCRLLRDAERVFELIVD----KKNI 286
+MH N+ L + ++ L D+Y K R D R+ +++ D K
Sbjct: 687 KMHRNVEMAELAASHLLELQPENSENYMILSDIYAKARRCDDFNRINKMMEDHEARKLPG 746
Query: 287 ASW----NAMLVGYIRN----GLYVEATKFLYLMKASGIQIQESLINDLRI 329
SW N++ N + E L L+K S I ++E ++++ I
Sbjct: 747 CSWIEIGNSVYSFTPENLLNRDIKEEVITMLLLLKKSMIMVEEGYVSEVNI 797
>gi|255545144|ref|XP_002513633.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223547541|gb|EEF49036.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 777
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/261 (27%), Positives = 130/261 (49%), Gaps = 10/261 (3%)
Query: 59 CGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-A 117
C ++ ARQ FDEMP RD SW ++ ++ ++E + +F M+ +P A
Sbjct: 67 CFSVEHARQFFDEMPCRDVVSWTGILSAHIKNERHEEALDIFDFMVLSGP------YPNA 120
Query: 118 WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQ 177
+ +L++C + GK++H K G N L SLI+ Y +F EDA +FS
Sbjct: 121 FTFSSILRSCFALGDFSYGKRIHASSIKHGFESNQILGSSLIDLYSRFDSTEDACKLFSY 180
Query: 178 LKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC 237
+ +TV WT I + + G + EM ++ N +TF +L A +
Sbjct: 181 MDSGDTVSWTTVIASCVQAGKCSHALRIYMEMLEAQVSSNEFTFVRLLAASSFI--GLQY 238
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYI 297
G+ +HA+ + +G++ + ++ LV+MY +C+ + DA +V +L + ++ W A++ G
Sbjct: 239 GKLIHAHAIVLGVKLNLVLKTALVNMYSRCQRIEDAIKVSKL-TPEYDVILWTAIISGLA 297
Query: 298 RNGLYVEATKFLYLMKASGIQ 318
+N + EA + M+ SG+
Sbjct: 298 QNMKFQEAVAAFHKMEISGVS 318
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 69/275 (25%), Positives = 126/275 (45%), Gaps = 9/275 (3%)
Query: 63 DTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVC 122
+ A +LF M D SW +I V + ++ EM++ + F
Sbjct: 172 EDACKLFSYMDSGDTVSWTTVIASCVQAGKCSHALRIYMEMLEAQVSSNEFTF------V 225
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
L A + ++ GK +H LG N+ L +L+N Y + + +EDA V ++
Sbjct: 226 RLLAASSFIGLQYGKLIHAHAIVLGVKLNLVLKTALVNMYSRCQRIEDAIKVSKLTPEYD 285
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
++WTA I + F + F +M + +++T+ S+L C + + GRQ+H
Sbjct: 286 VILWTAIISGLAQNMKFQEAVAAFHKMEISGVSASNFTYLSMLSVCISILS-LDLGRQIH 344
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCR-LLRDAERVFELIVDKKNIASWNAMLVGYIRNGL 301
+ +++ GLE D V LVDMY KC ++ R+F I N+ SW +++ G+ +G
Sbjct: 345 SRVIRTGLEDDVPVGNALVDMYMKCSCIVEHGLRMFRGI-KSPNVISWTSLIAGFAEHGF 403
Query: 302 YVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
++ M+ G+Q ++ + CS+I +
Sbjct: 404 QQDSLNLFMEMRTVGVQPNSFTLSIVLRVCSAIKS 438
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 112/248 (45%), Gaps = 7/248 (2%)
Query: 40 VNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITL 99
+ +K L+ L+ M+ C +++ A ++ P D W +I G +QE +
Sbjct: 249 LGVKLNLVLKTALVNMYSRCQRIEDAIKVSKLTPEYDVILWTAIISGLAQNMKFQEAVAA 308
Query: 100 FAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLI 159
F +M + + + +L C+ ++++LG+Q+H + + G ++ + +L+
Sbjct: 309 FHKMEISG-----VSASNFTYLSMLSVCISILSLDLGRQIHSRVIRTGLEDDVPVGNALV 363
Query: 160 NFYGKFRCL-EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
+ Y K C+ E +F +K N + WT+ I G N F EM ++ NS
Sbjct: 364 DMYMKCSCIVEHGLRMFRGIKSPNVISWTSLIAGFAEHGFQQDSLNLFMEMRTVGVQPNS 423
Query: 219 YTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE 278
+T S VL+ C + ++H +I+K + D V LVD Y + DA RV +
Sbjct: 424 FTLSIVLRVCSAIKSPYQT-LKLHGHIIKTKADYDVVVGNALVDAYAGSGRVDDAWRVVK 482
Query: 279 LIVDKKNI 286
+ + +I
Sbjct: 483 DMNQRDSI 490
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 64/282 (22%), Positives = 127/282 (45%), Gaps = 10/282 (3%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCG-QLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECI 97
R ++ + N L+ M++ C ++ ++F + + SW +I G+ + Q+ +
Sbjct: 349 RTGLEDDVPVGNALVDMYMKCSCIVEHGLRMFRGIKSPNVISWTSLIAGFAEHGFQQDSL 408
Query: 98 TLFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTG 156
LF EM R G V P ++ + VL+ C + ++HG + K + ++ +
Sbjct: 409 NLFMEM--RTVG----VQPNSFTLSIVLRVCSAIKSPYQTLKLHGHIIKTKADYDVVVGN 462
Query: 157 SLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKK 216
+L++ Y ++DA V + + +++ +T+ + G+ + M +K
Sbjct: 463 ALVDAYAGSGRVDDAWRVVKDMNQRDSITYTSLATRLNQMGYHELALSVISHMFNADVKI 522
Query: 217 NSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERV 276
+ ++ + A + G+Q+H +K GL V GL+D+YGK L+ +A R
Sbjct: 523 DGFSLTCFFSASASLGRI-ETGKQLHCYSLKSGLSCCLSVANGLIDLYGKYGLVHEARRA 581
Query: 277 FELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
F I + ++ SWN ++ G NG A M+ GIQ
Sbjct: 582 FTEITEP-DVVSWNGLISGLASNGHISSALSAFDDMRLRGIQ 622
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 67/288 (23%), Positives = 126/288 (43%), Gaps = 18/288 (6%)
Query: 14 TCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMP 73
+ +++ C+ K +L HI K ++ N L+ + G++D A ++ +M
Sbjct: 427 SIVLRVCSAIKSPYQTLKLHGHIIK-TKADYDVVVGNALVDAYAGSGRVDDAWRVVKDMN 485
Query: 74 LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNM 133
RD ++ + + ++ +++ + M + + + C A +
Sbjct: 486 QRDSITYTSLATRLNQMGYHELALSVISHMFNAD-----VKIDGFSLTCFFSASASLGRI 540
Query: 134 ELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNN 193
E GKQ+H K G S +S+ LI+ YGK+ + +A F+++ + V W I
Sbjct: 541 ETGKQLHCYSLKSGLSCCLSVANGLIDLYGKYGLVHEARRAFTEITEPDVVSWNGLISGL 600
Query: 194 CREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--GGVDDDG----NCGRQMHANIVK 247
GH + F +M I+ +S TF VL C GG+ D G + R+MH
Sbjct: 601 ASNGHISSALSAFDDMRLRGIQPDSITFLLVLSTCSHGGLVDMGLQYFHSMREMH----D 656
Query: 248 IGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
+ +SD YV C LVD+ G+ L +A + E + + + + + +L
Sbjct: 657 VEPQSDHYV-C-LVDILGRAGRLEEAMNIIETMPLEPDASIYKTLLAA 702
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 92/181 (50%), Gaps = 3/181 (1%)
Query: 121 VCVLKACVCTM-NMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
VC +C + +++ G +H + KLG ++ L +L++ Y K +E A F ++
Sbjct: 22 VCSKVVSLCNLKSLKEGVCIHSPIIKLGLQDHLYLNNNLLSLYSKCFSVEHARQFFDEMP 81
Query: 180 RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGR 239
+ V WT + + + + + F M N++TFSS+L++C + D + G+
Sbjct: 82 CRDVVSWTGILSAHIKNERHEEALDIFDFMVLSGPYPNAFTFSSILRSCFAL-GDFSYGK 140
Query: 240 QMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRN 299
++HA+ +K G ES++ + L+D+Y + DA ++F + D + SW ++ ++
Sbjct: 141 RIHASSIKHGFESNQILGSSLIDLYSRFDSTEDACKLFSYM-DSGDTVSWTTVIASCVQA 199
Query: 300 G 300
G
Sbjct: 200 G 200
>gi|449463559|ref|XP_004149501.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g14730-like [Cucumis sativus]
gi|449511944|ref|XP_004164096.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g14730-like [Cucumis sativus]
Length = 566
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 86/291 (29%), Positives = 144/291 (49%), Gaps = 15/291 (5%)
Query: 49 LNRLLLMHVSCGQLDTARQLF-DEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRK 107
+ L+ M+ C Q++ A +F D R+ ++ +I G+V + + M R
Sbjct: 13 ITSLINMYSRCNQMEEAVLVFRDPYHERNVFAYNAIIAGFVANGLAADGFQFYKRM--RS 70
Query: 108 KGHML--LVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
G M FP CV++AC M + +++HG LFK+G N+ + +L+N Y K
Sbjct: 71 VGVMPDKFTFP-----CVVRACCEFMEV---RKIHGCLFKMGLELNVFVGSALVNTYLKV 122
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
EDA+ VF +L + V+W A I + GH ++ FK MG E I + +T +S+L
Sbjct: 123 DGTEDAEKVFEELPERDVVLWNAMINGYTKIGHLNKAVVVFKRMGEEGISLSRFTTTSIL 182
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
+ D N GR +H + K+G S V L+DMYGKC+ DA +FE+I ++K+
Sbjct: 183 SILTSMGDINN-GRAIHGIVTKMGYSSCVAVSNALIDMYGKCKHTEDALMIFEMI-NEKD 240
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+ SWN+++ + + + + M S + I + ACS ++A
Sbjct: 241 LFSWNSIISAHEQCDDHDGTLRLFGKMLGSRVLPDVITITAVLPACSHLAA 291
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 73/275 (26%), Positives = 139/275 (50%), Gaps = 12/275 (4%)
Query: 63 DTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVC 122
+ A ++F+E+P RD W MI GY + + + +F M ++G L F I+
Sbjct: 126 EDAEKVFEELPERDVVLWNAMINGYTKIGHLNKAVVVFKRM--GEEGISLSRFTTTSILS 183
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
+L + ++ G+ +HG++ K+G S ++++ +LI+ YGK + EDA +F + +
Sbjct: 184 ILTS---MGDINNGRAIHGIVTKMGYSSCVAVSNALIDMYGKCKHTEDALMIFEMINEKD 240
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
W + I + + F +M R+ + T ++VL AC + + GR++H
Sbjct: 241 LFSWNSIISAHEQCDDHDGTLRLFGKMLGSRVLPDVITITAVLPACSHLAALMH-GREIH 299
Query: 243 ANIVKIGLESDE-----YVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYI 297
++ GL +E + ++DMY KC +++A+ +F+L+ +K ++ASWN M++GY
Sbjct: 300 GYMIVNGLGKNENGDDVLLNNAIMDMYAKCGCMKNADIIFDLMRNK-DVASWNIMIMGYA 358
Query: 298 RNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+G EA + M + I+ + ACS
Sbjct: 359 MHGYGTEALDMFHRMCEAQIKPDVVTFVGVLSACS 393
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 115/255 (45%), Gaps = 22/255 (8%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ C + A +F+ + +D SW +I + D+ + LF +M+ +
Sbjct: 214 NALIDMYGKCKHTEDALMIFEMINEKDLFSWNSIISAHEQCDDHDGTLRLFGKMLGSR-- 271
Query: 110 HMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRN-----ISLTGSLINFYG 163
V P I I VL AC + G+++HG + G +N + L ++++ Y
Sbjct: 272 ----VLPDVITITAVLPACSHLAALMHGREIHGYMIVNGLGKNENGDDVLLNNAIMDMYA 327
Query: 164 KFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSS 223
K C+++AD +F ++ + W I+ G+ + + F M +IK + TF
Sbjct: 328 KCGCMKNADIIFDLMRNKDVASWNIMIMGYAMHGYGTEALDMFHRMCEAQIKPDVVTFVG 387
Query: 224 VLKACGGVDDDGNCGRQMHANIVKIGLE-----SDEYVQCGLVDMYGKCRLLRDAERVFE 278
VL AC Q + + ++ LE + E+ C ++DM G+ L +A + +
Sbjct: 388 VLSAC----SHAGFVHQGRSFLTRMELEFGVIPTIEHYTC-IIDMLGRAGHLGEAYDLAQ 442
Query: 279 LIVDKKNIASWNAML 293
I + N+ W A+L
Sbjct: 443 RIPLEDNLILWMALL 457
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 73/169 (43%), Gaps = 9/169 (5%)
Query: 29 AFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYV 88
+ ++N + K N LL N ++ M+ CG + A +FD M +D SW +MI+GY
Sbjct: 300 GYMIVNGLGKNENGDDVLLN-NAIMDMYAKCGCMKNADIIFDLMRNKDVASWNIMIMGYA 358
Query: 89 DVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQ-VHGLLFKLG 147
E + +F M + + ++ F V VL AC + G+ + + + G
Sbjct: 359 MHGYGTEALDMFHRMCEAQIKPDVVTF-----VGVLSACSHAGFVHQGRSFLTRMELEFG 413
Query: 148 SSRNISLTGSLINFYGKFRCLEDA-DFVFSQLKRHNTVVWTAKIVNNCR 195
I +I+ G+ L +A D N ++W A ++ CR
Sbjct: 414 VIPTIEHYTCIIDMLGRAGHLGEAYDLAQRIPLEDNLILWMA-LLGACR 461
>gi|356557279|ref|XP_003546945.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Glycine max]
Length = 631
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 111/220 (50%), Gaps = 7/220 (3%)
Query: 110 HMLLVFPA-----WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
H + FP+ + +L++C+ +E GKQ+H L +LG + N+ L L+NFY
Sbjct: 46 HKVDSFPSSPSNHYYYASLLESCISAKALEPGKQLHARLCQLGIAYNLDLATKLVNFYSV 105
Query: 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
L +A +F ++ + N +W I G + + +M +K +++T V
Sbjct: 106 CNSLRNAHHLFDKIPKGNLFLWNVLIRAYAWNGPHETAISLYHQMLEYGLKPDNFTLPFV 165
Query: 225 LKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
LKAC + G GR +H +++ G E D +V LVDMY KC + DA VF+ IVD+
Sbjct: 166 LKACSALSTIGE-GRVIHERVIRSGWERDVFVGAALVDMYAKCGCVVDARHVFDKIVDRD 224
Query: 285 NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLI 324
+ WN+ML Y +NG E+ M A G++ E+ +
Sbjct: 225 AVL-WNSMLAAYAQNGHPDESLSLCCEMAAKGVRPTEATL 263
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 82/307 (26%), Positives = 146/307 (47%), Gaps = 24/307 (7%)
Query: 7 PITTDMYTCLIKECTFQKDSAGAFELLNHIRKRV---NIKPTLLFLNRLLLMHVSCGQLD 63
P Y L++ C SA A E + R+ I L +L+ + C L
Sbjct: 55 PSNHYYYASLLESCI----SAKALEPGKQLHARLCQLGIAYNLDLATKLVNFYSVCNSLR 110
Query: 64 TARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR--KKGHMLLVFPAWIIV 121
A LFD++P + W V+I Y ++ I+L+ +M++ K + L F
Sbjct: 111 NAHHLFDKIPKGNLFLWNVLIRAYAWNGPHETAISLYHQMLEYGLKPDNFTLPF------ 164
Query: 122 CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH 181
VLKAC + G+ +H + + G R++ + +L++ Y K C+ DA VF ++
Sbjct: 165 -VLKACSALSTIGEGRVIHERVIRSGWERDVFVGAALVDMYAKCGCVVDARHVFDKIVDR 223
Query: 182 NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC---G 238
+ V+W + + + GH + + EM + ++ T +V+ + D C G
Sbjct: 224 DAVLWNSMLAAYAQNGHPDESLSLCCEMAAKGVRPTEATLVTVISSSA----DIACLPHG 279
Query: 239 RQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIR 298
R++H + G + ++ V+ L+DMY KC ++ A +FE + +K+ + SWNA++ GY
Sbjct: 280 REIHGFGWRHGFQYNDKVKTALIDMYAKCGSVKVACVLFERLREKR-VVSWNAIITGYAM 338
Query: 299 NGLYVEA 305
+GL VEA
Sbjct: 339 HGLAVEA 345
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/245 (24%), Positives = 106/245 (43%), Gaps = 12/245 (4%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ CG + AR +FD++ RD W M+ Y E ++L EM +
Sbjct: 200 LVDMYAKCGCVVDARHVFDKIVDRDAVLWNSMLAAYAQNGHPDESLSLCCEMAAKG---- 255
Query: 112 LLVFPA-WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
V P +V V+ + + G+++HG ++ G N + +LI+ Y K ++
Sbjct: 256 --VRPTEATLVTVISSSADIACLPHGREIHGFGWRHGFQYNDKVKTALIDMYAKCGSVKV 313
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC-- 228
A +F +L+ V W A I G + + F+ M +E + + TF L AC
Sbjct: 314 ACVLFERLREKRVVSWNAIITGYAMHGLAVEALDLFERMMKE-AQPDHITFVGALAACSR 372
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
G + D+G + +I + Y C +VD+ G C L +A + + +
Sbjct: 373 GRLLDEGRALYNLMVRDCRINPTVEHYT-C-MVDLLGHCGQLDEAYDLIRQMDVMPDSGV 430
Query: 289 WNAML 293
W A+L
Sbjct: 431 WGALL 435
>gi|356524187|ref|XP_003530713.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27110-like [Glycine max]
Length = 705
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 80/283 (28%), Positives = 135/283 (47%), Gaps = 9/283 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLR-DFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGH 110
L+ +++SC D A+ +FD M + + W ++ GY Y E + LF +++ H
Sbjct: 44 LINLYLSCHLYDHAKCVFDNMENPCEISLWNGLMAGYTKNYMYVEALELFEKLL-----H 98
Query: 111 MLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ P ++ VLKAC LGK +H L K G +I + SL+ Y K E
Sbjct: 99 YPYLKPDSYTYPSVLKACGGLYKYVLGKMIHTCLVKTGLMMDIVVGSSLVGMYAKCNAFE 158
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A ++F+++ + W I + G+F + F M R + NS T ++ + +C
Sbjct: 159 KAIWLFNEMPEKDVACWNTVISCYYQSGNFKEALEYFGLMRRFGFEPNSVTITTAISSCA 218
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ D N G ++H ++ G D ++ LVDMYGKC L A VFE + KK + +W
Sbjct: 219 RL-LDLNRGMEIHEELINSGFLLDSFISSALVDMYGKCGHLEMAIEVFEQM-PKKTVVAW 276
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
N+M+ GY G + + M G++ + ++ L + CS
Sbjct: 277 NSMISGYGLKGDSISCIQLFKRMYNEGVKPTLTTLSSLIMVCS 319
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 76/265 (28%), Positives = 130/265 (49%), Gaps = 8/265 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ CG L+ A ++F++MP + +W MI GY D CI LF M
Sbjct: 248 LVDMYGKCGHLEMAIEVFEQMPKKTVVAWNSMISGYGLKGDSISCIQLFKRMYNEGVKPT 307
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
L + I+VC A + GK VHG + ++ + SL++ Y K +E A
Sbjct: 308 LTTLSSLIMVCSRSARLLE-----GKFVHGYTIRNRIQSDVFINSSLMDLYFKCGKVELA 362
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
+ +F + + V W I EG + F EM + ++ ++ TF+SVL AC +
Sbjct: 363 ENIFKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRKSYVEPDAITFTSVLTACSQL 422
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
G ++H I++ L+++E V L+DMY KC + +A VF+ + K+++ SW +
Sbjct: 423 AALEK-GEEIHNLIIEKKLDNNEVVMGALLDMYAKCGAVDEAFSVFKCL-PKRDLVSWTS 480
Query: 292 MLVGYIRNG-LYVEATKFLYLMKAS 315
M+ Y +G YV F +++++
Sbjct: 481 MITAYGSHGQAYVALELFAEMLQSN 505
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/287 (26%), Positives = 132/287 (45%), Gaps = 7/287 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+ L+ M+ C + A LF+EMP +D W +I Y +++E + F M R+ G
Sbjct: 145 SSLVGMYAKCNAFEKAIWLFNEMPEKDVACWNTVISCYYQSGNFKEALEYFGLM--RRFG 202
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ I + +C +++ G ++H L G + ++ +L++ YGK LE
Sbjct: 203 ---FEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLDSFISSALVDMYGKCGHLE 259
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A VF Q+ + V W + I +G FK M E +K T SS++ C
Sbjct: 260 MAIEVFEQMPKKTVVAWNSMISGYGLKGDSISCIQLFKRMYNEGVKPTLTTLSSLIMVCS 319
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
G+ +H ++ ++SD ++ L+D+Y KC + AE +F+LI K + SW
Sbjct: 320 RSARLLE-GKFVHGYTIRNRIQSDVFINSSLMDLYFKCGKVELAENIFKLI-PKSKVVSW 377
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
N M+ GY+ G EA M+ S ++ + ACS ++A
Sbjct: 378 NVMISGYVAEGKLFEALGLFSEMRKSYVEPDAITFTSVLTACSQLAA 424
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/246 (28%), Positives = 119/246 (48%), Gaps = 13/246 (5%)
Query: 36 IRKRVNIKPTLLFLNRLLL-MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQ 94
IR R+ + +F+N L+ ++ CG+++ A +F +P SW VMI GYV
Sbjct: 335 IRNRIQ---SDVFINSSLMDLYFKCGKVELAENIFKLIPKSKVVSWNVMISGYVAEGKLF 391
Query: 95 ECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISL 154
E + LF+EM K + F + VL AC +E G+++H L+ + N +
Sbjct: 392 EALGLFSEMRKSYVEPDAITFTS-----VLTACSQLAALEKGEEIHNLIIEKKLDNNEVV 446
Query: 155 TGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERI 214
G+L++ Y K +++A VF L + + V WT+ I G + F EM + +
Sbjct: 447 MGALLDMYAKCGAVDEAFSVFKCLPKRDLVSWTSMITAYGSHGQAYVALELFAEMLQSNM 506
Query: 215 KKNSYTFSSVLKACG--GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRD 272
K + TF ++L ACG G+ D+G N+ I + E+ C L+D+ G+ L +
Sbjct: 507 KPDRVTFLAILSACGHAGLVDEGCYYFNQMVNVYGI-IPRVEHYSC-LIDLLGRAGRLHE 564
Query: 273 AERVFE 278
A + +
Sbjct: 565 AYEILQ 570
>gi|242064134|ref|XP_002453356.1| hypothetical protein SORBIDRAFT_04g004500 [Sorghum bicolor]
gi|241933187|gb|EES06332.1| hypothetical protein SORBIDRAFT_04g004500 [Sorghum bicolor]
Length = 807
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 84/300 (28%), Positives = 133/300 (44%), Gaps = 13/300 (4%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R +P + N + G L AR L MP R+ SW +I E +
Sbjct: 69 RALPRPNVYSYNAAISAACRAGDLAAARDLLGRMPDRNAVSWNTVIAAVARSDSPGEALE 128
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
++ M++ L + + VL AC ++ G++ HGL K+G N + L
Sbjct: 129 MYRGMLQEG-----LAPTNFTLASVLSACGAVAALDDGRRCHGLAVKVGLDGNQFVENGL 183
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
+ Y K + DA +F + N V +TA + + G F M R I+ +
Sbjct: 184 LGMYTKCGSVADAVRLFDWMSSPNEVSFTAMMGGLAQSGAVDDALRLFARMSRSAIRVDP 243
Query: 219 YTFSSVLKACG-GVDDDGNCGR------QMHANIVKIGLESDEYVQCGLVDMYGKCRLLR 271
SSVL AC D N R +HA +V+ G +SD++V L+DMY K +
Sbjct: 244 VAVSSVLGACAQACAGDYNVARAIRLAQSIHALVVRKGFDSDQHVGNSLIDMYAKGMKMD 303
Query: 272 DAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
+A +VFE + +I SWN ++ GY + G Y A + L LM+ SG + E +++ +C
Sbjct: 304 EAMKVFESM-SSVSIVSWNILVTGYGQLGCYERALEVLDLMQESGFEPNEVTYSNMLASC 362
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/284 (26%), Positives = 133/284 (46%), Gaps = 8/284 (2%)
Query: 29 AFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYV 88
A E+L+ + + +P + + +L + + +AR +FD++ +W ++ GY
Sbjct: 336 ALEVLD-LMQESGFEPNEVTYSNMLASCIKARDVPSARAMFDKISKPSVTTWNTLLSGYG 394
Query: 89 DVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGS 148
+Q+ I LF R+ H + + +L C +ELGKQVH KL
Sbjct: 395 QEELHQDTIELF-----RRMQHQNVQPDRTTLAVILSTCSRLGILELGKQVHSASVKLLL 449
Query: 149 SRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKE 208
++ + LI+ Y K + A +F+ + + V W + I + F+ FK+
Sbjct: 450 HNDMFVASGLIDMYSKCGQVGIAQIIFNMMTERDVVCWNSMISGLAIHSLNEEAFDFFKQ 509
Query: 209 MGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCR 268
M + +++S++ +C + GRQ+HA ++K G + + YV L+DMY KC
Sbjct: 510 MRENGMFPTESSYASMINSCARLSSIPQ-GRQIHAQVLKDGYDQNVYVGSSLIDMYAKCG 568
Query: 269 LLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLM 312
+ DA F ++ KNI +WN M+ GY +NG +A + M
Sbjct: 569 NMDDARLFFNCMI-VKNIVAWNEMIHGYAQNGFGEKAVELFEYM 611
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 86/175 (49%), Gaps = 6/175 (3%)
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
L A + ++ N V W I R + ++ M +E + ++T +SVL A
Sbjct: 92 LAAARDLLGRMPDRNAVSWNTVIAAVARSDSPGEALEMYRGMLQEGLAPTNFTLASVLSA 151
Query: 228 CGGVD--DDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
CG V DDG R+ H VK+GL+ +++V+ GL+ MY KC + DA R+F+ + N
Sbjct: 152 CGAVAALDDG---RRCHGLAVKVGLDGNQFVENGLLGMYTKCGSVADAVRLFDWM-SSPN 207
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKIN 340
S+ AM+ G ++G +A + M S I++ ++ + AC+ A N
Sbjct: 208 EVSFTAMMGGLAQSGAVDDALRLFARMSRSAIRVDPVAVSSVLGACAQACAGDYN 262
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 108/248 (43%), Gaps = 13/248 (5%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ CGQ+ A+ +F+ M RD W MI G + +E F +M R+ G
Sbjct: 459 LIDMYSKCGQVGIAQIIFNMMTERDVVCWNSMISGLAIHSLNEEAFDFFKQM--RENG-- 514
Query: 112 LLVFPA-WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
+FP ++ +C ++ G+Q+H + K G +N+ + SLI+ Y K ++D
Sbjct: 515 --MFPTESSYASMINSCARLSSIPQGRQIHAQVLKDGYDQNVYVGSSLIDMYAKCGNMDD 572
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC-- 228
A F+ + N V W I + G + F+ M + K +S TF +VL C
Sbjct: 573 ARLFFNCMIVKNIVAWNEMIHGYAQNGFGEKAVELFEYMLTTKQKPDSVTFIAVLTGCSH 632
Query: 229 -GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
G VD+ M +N L E+ C L+D G+ + V + + K +
Sbjct: 633 SGLVDEAIAYFNSMESNYGIRPLV--EHYTC-LIDALGRAGRFAEVVAVIDKMPYKDDAI 689
Query: 288 SWNAMLVG 295
W +L
Sbjct: 690 LWEVLLAA 697
>gi|225425182|ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
[Vitis vinifera]
Length = 684
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 92/348 (26%), Positives = 149/348 (42%), Gaps = 47/348 (13%)
Query: 25 DSAGAFELLNHIRKRVNIKP--TLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAV 82
D G + L+ RK + P N L+ + G LD A +LF MP D SW
Sbjct: 58 DVYGKCDCLDDARKLFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNS 117
Query: 83 MIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGL 142
M+ G+ ++E + F +M + + + L AC M++ +G QVH L
Sbjct: 118 MVSGFAQHDRFEESLEYFVKMHRED-----FLLNEYSFGSALSACAGLMDLNMGTQVHAL 172
Query: 143 LFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQV 202
+ K S ++ + +LI+ Y K + A+ VFS + N V W + I + G +
Sbjct: 173 VSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEA 232
Query: 203 FNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC----GRQMHANIVKIGLESDEYV-Q 257
F M ++ + T +SV+ AC + C G Q+HA +VK D+ V
Sbjct: 233 LEVFVRMMDSGLEPDEVTLASVVSACASL-----CALKEGLQIHARVVKTNKFRDDLVLG 287
Query: 258 CGLVDMYGKCRLLRDAERVFELI------------------------------VDKKNIA 287
LVDMY KC + +A RVF+ + + ++N+
Sbjct: 288 NALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVV 347
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
SWNA++ GY +NG EA + L+K I +L AC++++
Sbjct: 348 SWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNLLSACANLA 395
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 87/319 (27%), Positives = 140/319 (43%), Gaps = 45/319 (14%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ CG + A ++F M R+ +W +I Y E + +F MM
Sbjct: 188 LIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSG---- 243
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFK---------LGSS------------- 149
L + V+ AC ++ G Q+H + K LG++
Sbjct: 244 -LEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNE 302
Query: 150 ----------RNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHF 199
RN+ S+++ Y + ++ A F+FS++ + N V W A I + G
Sbjct: 303 ARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGEN 362
Query: 200 HQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGL------ESD 253
+ F+ + RE I YTF ++L AC + D GRQ H +++K G ESD
Sbjct: 363 EEALRLFRLLKRESIWPTHYTFGNLLSACANLADL-LLGRQAHTHVLKQGFEFQSGAESD 421
Query: 254 EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMK 313
+V L+DMY KC + D RVFE + +++ SWNA++VGY +NG EA + M
Sbjct: 422 IFVGNSLIDMYMKCGSIEDGSRVFEKM-KERDCVSWNAIIVGYAQNGYGAEALQIFRKML 480
Query: 314 ASGIQIQESLINDLRIACS 332
G + + + ACS
Sbjct: 481 VCGEKPDHVTMIGVLCACS 499
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 113/247 (45%), Gaps = 33/247 (13%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
+L +C+ + + + VH + S I + LI+ YGK CL+DA +F ++ + N
Sbjct: 21 LLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKLFDRMPQRN 80
Query: 183 TVVWTAKIVNNCREG-------------------------------HFHQVFNDFKEMGR 211
T W + I + G F + F +M R
Sbjct: 81 TFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMHR 140
Query: 212 ERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLR 271
E N Y+F S L AC G+ D N G Q+HA + K +D Y+ L+DMY KC +
Sbjct: 141 EDFLLNEYSFGSALSACAGLMDL-NMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVA 199
Query: 272 DAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
AE VF ++++ N+ +WN+++ Y +NG EA + M SG++ E + + AC
Sbjct: 200 CAEEVFSGMIER-NLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSAC 258
Query: 332 SSISASK 338
+S+ A K
Sbjct: 259 ASLCALK 265
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 117/251 (46%), Gaps = 22/251 (8%)
Query: 56 HVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVF 115
+ + AR +F +M R+ SW +I GY + +E + LF ++KR+ ++
Sbjct: 325 YARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLF-RLLKRES-----IW 378
Query: 116 PA-WIIVCVLKACVCTMNMELGKQVH------GLLFKLGSSRNISLTGSLINFYGKFRCL 168
P + +L AC ++ LG+Q H G F+ G+ +I + SLI+ Y K +
Sbjct: 379 PTHYTFGNLLSACANLADLLLGRQAHTHVLKQGFEFQSGAESDIFVGNSLIDMYMKCGSI 438
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
ED VF ++K + V W A IV + G+ + F++M K + T VL AC
Sbjct: 439 EDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCAC 498
Query: 229 ---GGVDDDGNCGRQMHANIVKIGL-ESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
G V++ GR ++ + GL ++ C +VD+ G+ L +A+ + E +
Sbjct: 499 SHAGLVEE----GRHYFFSMEEHGLIPLKDHYTC-MVDLLGRAGCLNEAKNLIEAMPVNP 553
Query: 285 NIASWNAMLVG 295
+ W ++L
Sbjct: 554 DAVVWGSLLAA 564
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 52/103 (50%), Gaps = 2/103 (1%)
Query: 211 RERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLL 270
R+ NS F+ +L +C R +HA I+ + ++Q L+D+YGKC L
Sbjct: 8 RDLYLPNSSPFAKLLDSCLR-SRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCL 66
Query: 271 RDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMK 313
DA ++F+ + ++N +WN+++ ++G EA + M
Sbjct: 67 DDARKLFDRM-PQRNTFTWNSLISVLTKSGFLDEAARLFGSMP 108
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 64/143 (44%), Gaps = 16/143 (11%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMM--KRK 107
N L+ M++ CG ++ ++F++M RD SW +IVGY E + +F +M+ K
Sbjct: 426 NSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEALQIFRKMLVCGEK 485
Query: 108 KGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGS---LINFYGK 164
H+ ++ VL AC +E G+ F + I L +++ G+
Sbjct: 486 PDHV-------TMIGVLCACSHAGLVEEGRH---YFFSMEEHGLIPLKDHYTCMVDLLGR 535
Query: 165 FRCLEDADFVFSQLK-RHNTVVW 186
CL +A + + + VVW
Sbjct: 536 AGCLNEAKNLIEAMPVNPDAVVW 558
>gi|449450898|ref|XP_004143199.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g15720-like [Cucumis sativus]
Length = 603
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 83/287 (28%), Positives = 134/287 (46%), Gaps = 12/287 (4%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
+N L+ +V + TA QLFDEMP + SW ++ GYVD + LF EM++
Sbjct: 62 VNHLINCYVRFRSIATAHQLFDEMPNPNVVSWTSLMAGYVDNGQPSTALFLFGEMLRSP- 120
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+V + +KAC N+ G+ H + G NI + SLI+ YGK +
Sbjct: 121 ----VVPNDFTFATAIKACSILSNLRHGEMFHAHVEIFGYGGNIVVCSSLIDMYGKCNDV 176
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQ---VFNDFKEMGRERIKKNSYTFSSVL 225
A VF+ + N V WT+ I + H + VF +F + E N Y +SV+
Sbjct: 177 VKARGVFNSMSCKNIVSWTSMIAAYAQNAHGDEALKVFREFTSLSSEH--PNPYMLASVI 234
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
AC + + G+ MH + +G +S E V LVDMY KC L +++VF I + +
Sbjct: 235 SACASLGRLVS-GKVMHGAAISLGCDSSEVVASVLVDMYAKCGSLDYSDKVFNRISN-PS 292
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+ + +M+V + G ++ + M G++ + + ACS
Sbjct: 293 VIPYTSMIVSTAKYGFGRKSLQLFEEMVRKGLKPNHITLVGVLHACS 339
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 88/198 (44%), Gaps = 3/198 (1%)
Query: 138 QVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREG 197
H + KLG N LIN Y +FR + A +F ++ N V WT+ + G
Sbjct: 45 STHSIALKLGFLNNTVNVNHLINCYVRFRSIATAHQLFDEMPNPNVVSWTSLMAGYVDNG 104
Query: 198 HFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQ 257
F EM R + N +TF++ +KAC + + G HA++ G + V
Sbjct: 105 QPSTALFLFGEMLRSPVVPNDFTFATAIKAC-SILSNLRHGEMFHAHVEIFGYGGNIVVC 163
Query: 258 CGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATK-FLYLMKASG 316
L+DMYGKC + A VF + KNI SW +M+ Y +N EA K F S
Sbjct: 164 SSLIDMYGKCNDVVKARGVFNSM-SCKNIVSWTSMIAAYAQNAHGDEALKVFREFTSLSS 222
Query: 317 IQIQESLINDLRIACSSI 334
++ + AC+S+
Sbjct: 223 EHPNPYMLASVISACASL 240
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 87/186 (46%), Gaps = 6/186 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ C + AR +F+ M ++ SW MI Y A E + +F E H
Sbjct: 166 LIDMYGKCNDVVKARGVFNSMSCKNIVSWTSMIAAYAQNAHGDEALKVFREFTSLSSEHP 225
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+++ V+ AC + GK +HG LG + + L++ Y K L+ +
Sbjct: 226 ----NPYMLASVISACASLGRLVSGKVMHGAAISLGCDSSEVVASVLVDMYAKCGSLDYS 281
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--G 229
D VF+++ + + +T+ IV+ + G + F+EM R+ +K N T VL AC
Sbjct: 282 DKVFNRISNPSVIPYTSMIVSTAKYGFGRKSLQLFEEMVRKGLKPNHITLVGVLHACSHS 341
Query: 230 GVDDDG 235
G+ ++G
Sbjct: 342 GLPNEG 347
>gi|297806459|ref|XP_002871113.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297316950|gb|EFH47372.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 637
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 83/293 (28%), Positives = 139/293 (47%), Gaps = 7/293 (2%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R+ ++ + N L+ + CG ++ ARQ+FD M R SW MI Y E +
Sbjct: 91 RMELQGDVTLSNVLINAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALD 150
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
+F EM R +G F + I VL AC + K++H L K N+ + +L
Sbjct: 151 IFWEM--RNEG---FKFSEFTISSVLSACGANCDALECKKLHCLSMKTSLDLNLYVGTAL 205
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
++ Y K + DA VF ++ ++V W++ + + ++ + ++ R +++N
Sbjct: 206 LDLYAKCGMINDAVQVFESMQDKSSVTWSSMVAGYVQSKNYEEALLLYRRAQRMSLEQNQ 265
Query: 219 YTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE 278
+T SSV+ AC + G+QMHA I K G S+ +V VDMY KC LR++ +F
Sbjct: 266 FTLSSVICACSNLAALIE-GKQMHAVIRKSGFGSNVFVASSAVDMYAKCGSLRESYIIFS 324
Query: 279 LIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
V +KNI WN ++ G+ ++ E M+ G+ E + L C
Sbjct: 325 E-VQEKNIELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVC 376
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 118/246 (47%), Gaps = 9/246 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL ++ CG ++ A Q+F+ M + +W+ M+ GYV +Y+E + L+ R+ M
Sbjct: 205 LLDLYAKCGMINDAVQVFESMQDKSSVTWSSMVAGYVQSKNYEEALLLY-----RRAQRM 259
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
L + + V+ AC + GKQ+H ++ K G N+ + S ++ Y K L ++
Sbjct: 260 SLEQNQFTLSSVICACSNLAALIEGKQMHAVIRKSGFGSNVFVASSAVDMYAKCGSLRES 319
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG-- 229
+FS+++ N +W I + +V F++M ++ + N TFSS+L CG
Sbjct: 320 YIIFSEVQEKNIELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHT 379
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
G+ ++G R GL + +VD+ G+ LL +A + + I + + W
Sbjct: 380 GLVEEGR--RFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFEPTASIW 437
Query: 290 NAMLVG 295
++L
Sbjct: 438 GSLLAS 443
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 109/214 (50%), Gaps = 2/214 (0%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
+L+ C + K HG ++ +++L+ LIN Y K +E A VF + +
Sbjct: 69 ILQLCARNGAVMEAKACHGKTMRMELQGDVTLSNVLINAYSKCGFVELARQVFDGMLERS 128
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
V W I R + + F EM E K + +T SSVL ACG D C +++H
Sbjct: 129 LVSWNTMIGLYTRNRMESEALDIFWEMRNEGFKFSEFTISSVLSACGANCDALEC-KKLH 187
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
+K L+ + YV L+D+Y KC ++ DA +VFE + DK ++ +W++M+ GY+++ Y
Sbjct: 188 CLSMKTSLDLNLYVGTALLDLYAKCGMINDAVQVFESMQDKSSV-TWSSMVAGYVQSKNY 246
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
EA + ++ + ++ + ACS+++A
Sbjct: 247 EEALLLYRRAQRMSLEQNQFTLSSVICACSNLAA 280
>gi|302811297|ref|XP_002987338.1| hypothetical protein SELMODRAFT_10449 [Selaginella moellendorffii]
gi|300144973|gb|EFJ11653.1| hypothetical protein SELMODRAFT_10449 [Selaginella moellendorffii]
Length = 591
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 87/291 (29%), Positives = 137/291 (47%), Gaps = 16/291 (5%)
Query: 58 SCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPA 117
+CG ARQ+F EM +D SW MI AD EC+ LF +M+ L
Sbjct: 117 TCGSSPLARQVFSEMVRKDVVSWTSMI----KAADADECLLLFRQMLLEGVAPNELTLAE 172
Query: 118 WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQ 177
+ C L A +G+ VH +LG ++ + SLIN Y K L A+ +F
Sbjct: 173 ALHSCSL-APDLPATFAVGQCVHACARELGYETDVVVGTSLINMYAKCAALPQAEAIFHL 231
Query: 178 L---KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDD 234
L R N V WTA I N + G + Q +++M + I N +F + L AC +
Sbjct: 232 LATNARTNCVCWTAMITANAKAGEWKQAIRLYRQMQLQGIAPNRVSFVAALSACSTPEFL 291
Query: 235 GNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAM-- 292
G +H+ V+ GLESD V +V MYGKC + DA ++F+ + +++ +W+AM
Sbjct: 292 AT-GELVHSCTVERGLESDTMVANAVVSMYGKCGSVEDARKMFDGM-KRRDSVTWSAMLA 349
Query: 293 ---LVGYIRNGLYVEATKFLYL-MKASGIQIQESLINDLRIACSSISASKI 339
L G + + E L+ M+ G++ + + L CS ++A ++
Sbjct: 350 AIALAGELDSRARNEQALLLFARMQLEGVKPTKVTLVSLLNCCSDLAAGRM 400
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/331 (21%), Positives = 132/331 (39%), Gaps = 26/331 (7%)
Query: 17 IKECTFQKDSAGAFEL---LNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMP 73
+ C+ D F + ++ + + + ++ L+ M+ C L A +F +
Sbjct: 174 LHSCSLAPDLPATFAVGQCVHACARELGYETDVVVGTSLINMYAKCAALPQAEAIFHLLA 233
Query: 74 LRDFNS---WAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCT 130
+ W MI ++++ I L+ +M + + F V L AC
Sbjct: 234 TNARTNCVCWTAMITANAKAGEWKQAIRLYRQMQLQGIAPNRVSF-----VAALSACSTP 288
Query: 131 MNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKI 190
+ G+ VH + G + + ++++ YGK +EDA +F +KR ++V W+A +
Sbjct: 289 EFLATGELVHSCTVERGLESDTMVANAVVSMYGKCGSVEDARKMFDGMKRRDSVTWSAML 348
Query: 191 VNNCREGHF------HQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHAN 244
G Q F M E +K T S+L C D GR +H+
Sbjct: 349 AAIALAGELDSRARNEQALLLFARMQLEGVKPTKVTLVSLLNCC----SDLAAGRMIHSR 404
Query: 245 IV----KIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
++ G E + + +V+MY +C L A R F ++ SWN M+ ++
Sbjct: 405 VLLDRRHDGGELEVALWNAVVNMYARCGSLDSAAREFH-GAQARDFVSWNGMITASAQHS 463
Query: 301 LYVEATKFLYLMKASGIQIQESLINDLRIAC 331
+ +A + M+ G+ E + L AC
Sbjct: 464 RWSDAVAYFQEMQQEGVDPDEVTMVTLLFAC 494
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/279 (22%), Positives = 110/279 (39%), Gaps = 43/279 (15%)
Query: 74 LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNM 133
+ D SW +I GY + + + L M + F + +LKAC ++
Sbjct: 1 IPDVVSWTSLIWGYSQRGQWDQAMALLGRMQQEGVAPNSFTFGS-----ILKAC---KDV 52
Query: 134 ELGKQVHGLLFKLGSSR----NISLTGSLINFYGKFRCLEDADFVFSQLKR--HNTVVWT 187
E G ++H L ++ + ++ + +L+ YG A VF + N V W+
Sbjct: 53 EAGARIHRFLLQVRHGQILYHDVYVATALVGMYGSCGHSAAAREVFDAIPSATKNIVTWS 112
Query: 188 AKIVNNCREGHFHQVFND------------------------FKEMGRERIKKNSYTFSS 223
A + QVF++ F++M E + N T +
Sbjct: 113 AMLGTCGSSPLARQVFSEMVRKDVVSWTSMIKAADADECLLLFRQMLLEGVAPNELTLAE 172
Query: 224 VLKACGGVDD---DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELI 280
L +C D G+ +HA ++G E+D V L++MY KC L AE +F L+
Sbjct: 173 ALHSCSLAPDLPATFAVGQCVHACARELGYETDVVVGTSLINMYAKCAALPQAEAIFHLL 232
Query: 281 VD--KKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGI 317
+ N W AM+ + G + +A + M+ GI
Sbjct: 233 ATNARTNCVCWTAMITANAKAGEWKQAIRLYRQMQLQGI 271
Score = 40.8 bits (94), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 66/148 (44%), Gaps = 9/148 (6%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N ++ M+ CG LD+A + F RDF SW MI + + + + F EM +
Sbjct: 422 NAVVNMYARCGSLDSAAREFHGAQARDFVSWNGMITASAQHSRWSDAVAYFQEMQQEG-- 479
Query: 110 HMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFK-LGSSRNISLTGSLINFYGKFRC 167
V P + +V +L AC +E G + + G S + + +++ G+
Sbjct: 480 ----VDPDEVTMVTLLFACNHAGFVEQGCDYFASMSRDYGLSPRLEHSACVLDMLGRSGH 535
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCR 195
+E A + + V+WT+ ++ +CR
Sbjct: 536 VEVAQEMLKDSACSDPVLWTS-LLGSCR 562
>gi|449517497|ref|XP_004165782.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g15720-like [Cucumis sativus]
Length = 603
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 83/287 (28%), Positives = 134/287 (46%), Gaps = 12/287 (4%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
+N L+ +V + TA QLFDEMP + SW ++ GYVD + LF EM++
Sbjct: 62 VNHLINCYVRFRSIATAHQLFDEMPNPNVVSWTSLMAGYVDNGQPSTALFLFGEMLRSP- 120
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+V + +KAC N+ G+ H + G NI + SLI+ YGK +
Sbjct: 121 ----VVPNDFTFATAIKACSILSNLRHGEMFHAHVEIFGYGGNIVVCSSLIDMYGKCNDV 176
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQ---VFNDFKEMGRERIKKNSYTFSSVL 225
A VF+ + N V WT+ I + H + VF +F + E N Y +SV+
Sbjct: 177 VKARGVFNSMSCKNIVSWTSMIAAYAQNAHGDEALKVFREFTSLSSEH--PNPYMLASVI 234
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
AC + + G+ MH + +G +S E V LVDMY KC L +++VF I + +
Sbjct: 235 SACASLGRLVS-GKVMHGAAISLGCDSSEVVASVLVDMYAKCGSLDYSDKVFNRISN-PS 292
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+ + +M+V + G ++ + M G++ + + ACS
Sbjct: 293 VIPYTSMIVSTAKYGFGRKSLQLFEEMVRKGLKPNHITLVGVLHACS 339
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 88/198 (44%), Gaps = 3/198 (1%)
Query: 138 QVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREG 197
H + KLG N LIN Y +FR + A +F ++ N V WT+ + G
Sbjct: 45 STHSIALKLGFLNNTVNVNHLINCYVRFRSIATAHQLFDEMPNPNVVSWTSLMAGYVDNG 104
Query: 198 HFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQ 257
F EM R + N +TF++ +KAC + + G HA++ G + V
Sbjct: 105 QPSTALFLFGEMLRSPVVPNDFTFATAIKAC-SILSNLRHGEMFHAHVEIFGYGGNIVVC 163
Query: 258 CGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATK-FLYLMKASG 316
L+DMYGKC + A VF + KNI SW +M+ Y +N EA K F S
Sbjct: 164 SSLIDMYGKCNDVVKARGVFNSM-SCKNIVSWTSMIAAYAQNAHGDEALKVFREFTSLSS 222
Query: 317 IQIQESLINDLRIACSSI 334
++ + AC+S+
Sbjct: 223 EHPNPYMLASVISACASL 240
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 87/186 (46%), Gaps = 6/186 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ C + AR +F+ M ++ SW MI Y A E + +F E H
Sbjct: 166 LIDMYGKCNDVVKARGVFNSMSCKNIVSWTSMIAAYAQNAHGDEALKVFREFTSLSSEHP 225
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+++ V+ AC + GK +HG LG + + L++ Y K L+ +
Sbjct: 226 ----NPYMLASVISACASLGRLVSGKVMHGAAISLGCDSSEVVASVLVDMYAKCGSLDYS 281
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--G 229
D VF+++ + + +T+ IV+ + G + F+EM R+ +K N T VL AC
Sbjct: 282 DKVFNRISNPSVIPYTSMIVSTAKYGFGRKSLQLFEEMVRKGLKPNHITLVGVLHACSHS 341
Query: 230 GVDDDG 235
G+ ++G
Sbjct: 342 GLPNEG 347
>gi|302800503|ref|XP_002982009.1| hypothetical protein SELMODRAFT_115259 [Selaginella moellendorffii]
gi|300150451|gb|EFJ17102.1| hypothetical protein SELMODRAFT_115259 [Selaginella moellendorffii]
Length = 604
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 137/287 (47%), Gaps = 9/287 (3%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
+ N +L+M+ CG ++ + F EM R+ SW +I Y + I +F M+
Sbjct: 68 MFLANHILIMYGKCGGMEDLSRAFSEMKRRNIVSWNAVISAYAQNDRSSDAIVIFLRML- 126
Query: 106 RKKGHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
+ + P+++ VL A K VH L ++G + + +L+N Y K
Sbjct: 127 -----LDGIQPSYVTFTSVLNAFAGPELHRWAKLVHDLALEVGFGSHPVVATALLNMYSK 181
Query: 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
++ A VF +L + V W+ I + GH + F M E I+ N TF +V
Sbjct: 182 VGSIDRARQVFDELAIKDVVSWSNMIAAYAQTGHGTEALEMFHRMDAEGIQANVITFVAV 241
Query: 225 LKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
+ AC V + R +H I++ GLES+ + L++MYGKC L +A+++F+ + + +
Sbjct: 242 VHACVLVARITDA-RTIHRRIIEAGLESNTVLGTALLNMYGKCGGLPEAKKIFDKLTE-R 299
Query: 285 NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
++ W+A+L Y R+G A K LM+ G++ + + AC
Sbjct: 300 DVVVWSAILEAYARHGHPRVALKLFTLMQQEGVRPNDVTFVGVLEAC 346
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 73/246 (29%), Positives = 116/246 (47%), Gaps = 13/246 (5%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL M+ G +D ARQ+FDE+ ++D SW+ MI Y E + +F M
Sbjct: 175 LLNMYSKVGSIDRARQVFDELAIKDVVSWSNMIAAYAQTGHGTEALEMFHRMDAEGIQAN 234
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
++ F V V+ ACV + + +H + + G N L +L+N YGK L +A
Sbjct: 235 VITF-----VAVVHACVLVARITDARTIHRRIIEAGLESNTVLGTALLNMYGKCGGLPEA 289
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--G 229
+F +L + VVW+A + R GH F M +E ++ N TF VL+AC G
Sbjct: 290 KKIFDKLTERDVVVWSAILEAYARHGHPRVALKLFTLMQQEGVRPNDVTFVGVLEACCHG 349
Query: 230 GVDDDGNCGRQMHANIVKIG--LESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
G + GR A++V+ + +V C ++DM G+ L +AE + K+
Sbjct: 350 GFVPE---GRFHFASLVRDHELRPTAHHVHC-MLDMLGRAGKLEEAESFIARMPVKEEAI 405
Query: 288 SWNAML 293
+W+ L
Sbjct: 406 TWSIFL 411
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 94/197 (47%), Gaps = 4/197 (2%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
+L AC + N+ G+++H + G + L ++ YGK +ED FS++KR N
Sbjct: 39 LLLACGRSRNLGNGRRLHARIVATGHQDVMFLANHILIMYGKCGGMEDLSRAFSEMKRRN 98
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
V W A I + F M + I+ + TF+SVL A G + + +H
Sbjct: 99 IVSWNAVISAYAQNDRSSDAIVIFLRMLLDGIQPSYVTFTSVLNAFAGPELH-RWAKLVH 157
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVF-ELIVDKKNIASWNAMLVGYIRNGL 301
+++G S V L++MY K + A +VF EL + K++ SW+ M+ Y + G
Sbjct: 158 DLALEVGFGSHPVVATALLNMYSKVGSIDRARQVFDELAI--KDVVSWSNMIAAYAQTGH 215
Query: 302 YVEATKFLYLMKASGIQ 318
EA + + M A GIQ
Sbjct: 216 GTEALEMFHRMDAEGIQ 232
>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
Length = 711
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 86/287 (29%), Positives = 141/287 (49%), Gaps = 15/287 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ +CG L +AR++FD+M + SWA MI Y E I LF M
Sbjct: 176 NTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRM------ 229
Query: 110 HMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+ V P I +V VL AC + ++E KQVH + + G + LT +L++ Y K C
Sbjct: 230 EIASVKPNEITLVNVLTACARSRDLETAKQVHKYIDETGIGFHTVLTSALMDVYCKCGCY 289
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
A +F+++ N W I + + + + + F EM +K + T +S+L AC
Sbjct: 290 PLARDLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIAC 349
Query: 229 ---GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
G ++ G+ +H I K +E D + LVDMY KC + A RVF+ + +K+
Sbjct: 350 THLGALE----LGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEM-PEKD 404
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+ +W A++VG G ++A + + M+ S ++ + ACS
Sbjct: 405 VMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACS 451
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 73/277 (26%), Positives = 122/277 (44%), Gaps = 10/277 (3%)
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI 119
G L AR +F+++P + +I GY + ++ I + MM + FP+
Sbjct: 88 GSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLF 147
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
C +C GKQ+H KLG + + + +L+N Y CL A VF ++
Sbjct: 148 KSC---GVLCE-----GKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMV 199
Query: 180 RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGR 239
+ V W I + H+ F+ M +K N T +VL AC D +
Sbjct: 200 NKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASVKPNEITLVNVLTACAR-SRDLETAK 258
Query: 240 QMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRN 299
Q+H I + G+ + L+D+Y KC A +F + +KN+ WN M+ G++ +
Sbjct: 259 QVHKYIDETGIGFHTVLTSALMDVYCKCGCYPLARDLFNKM-PEKNLFCWNIMINGHVED 317
Query: 300 GLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
Y EA M+ SG++ + + L IAC+ + A
Sbjct: 318 SDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGA 354
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 100/213 (46%), Gaps = 8/213 (3%)
Query: 122 CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYG--KFRCLEDADFVFSQLK 179
C+L CT +L KQ+H + + + ++ F L A VF+Q+
Sbjct: 43 CLLSLEKCTTMSQL-KQIHAQMLRTCLFVDPFSASKIVAFCALHDSGSLPYARLVFNQIP 101
Query: 180 RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGR 239
T + I + Q ++ M + + + +TF S+ K+CG + + G+
Sbjct: 102 NPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSCGVLCE----GK 157
Query: 240 QMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRN 299
Q+H + K+G SD Y+Q L++MY C L A +VF+ +V+ K++ SW M+ Y +
Sbjct: 158 QLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVN-KSVVSWATMIGAYAQW 216
Query: 300 GLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
L EA K M+ + ++ E + ++ AC+
Sbjct: 217 DLPHEAIKLFRRMEIASVKPNEITLVNVLTACA 249
>gi|302144099|emb|CBI23204.3| unnamed protein product [Vitis vinifera]
Length = 907
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 84/284 (29%), Positives = 139/284 (48%), Gaps = 13/284 (4%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYV--DVADYQECITLFAEMMKRKKG 109
L+ M++ CG +++A ++F+ M +D SW MI G V D AD +T+F M+K +
Sbjct: 288 LIGMYLKCGNVNSAFRIFEGMMHKDVISWTAMISGLVQNDCADM--AVTVFRRMLKSR-- 343
Query: 110 HMLLVFPAW-IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
V P+ I VL AC + LG VHG + + +I SL+ Y K L
Sbjct: 344 ----VMPSTATIASVLAACAELGSFPLGTSVHGYILRQRIKLDIPSQNSLVTMYAKCGHL 399
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
E + VF ++ R + V W A + + + GH + F EM + R + +S T S+L+AC
Sbjct: 400 EQSCSVFDRMSRRDIVSWNAIVSGHAQNGHLCKALLLFNEMRKARQRPDSITVVSLLQAC 459
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
+ G+ +H + K L + LVDMY KC L A++ F+ + ++++ S
Sbjct: 460 ASIGALHQ-GKWIHNFVTKSCLGPCILIDTALVDMYSKCGDLGSAQKCFDRM-PQQDLVS 517
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
W++++ GY +G A + +GIQ + + ACS
Sbjct: 518 WSSIIAGYGSHGKGETALRMYSDFLHTGIQPNHVIYLSILSACS 561
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 134/287 (46%), Gaps = 7/287 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N +L ++ CG+++ A+ LF+ M RD SW ++ GY + + +E + L M
Sbjct: 185 NSMLNVYCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIE 244
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
F + + +++ + +GK VHG + + G ++ + SLI Y K +
Sbjct: 245 PDQQTFGSLVSAAAMQS-----KLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKCGNVN 299
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A +F + + + WTA I + F+ M + R+ ++ T +SVL AC
Sbjct: 300 SAFRIFEGMMHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASVLAACA 359
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ G +H I++ ++ D Q LV MY KC L + VF+ + +++I SW
Sbjct: 360 EL-GSFPLGTSVHGYILRQRIKLDIPSQNSLVTMYAKCGHLEQSCSVFDRM-SRRDIVSW 417
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
NA++ G+ +NG +A M+ + + + L AC+SI A
Sbjct: 418 NAIVSGHAQNGHLCKALLLFNEMRKARQRPDSITVVSLLQACASIGA 464
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/336 (22%), Positives = 152/336 (45%), Gaps = 23/336 (6%)
Query: 7 PITTDMYTCLIKECTFQKDSAGAFELLNH---IRKRVNI---KPTLLFLNRLLLMHVSCG 60
P + L+K CT + +L +H +RV + L+ + G
Sbjct: 45 PPDAHTFPSLVKACT-------SLDLFSHGLSFHQRVIVDGYSSDSYIATSLINFYSKFG 97
Query: 61 QLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWII 120
+AR++FD M R+ W MI Y ++ +++ M R++G + P+ +
Sbjct: 98 HNQSARKVFDTMDDRNVVPWTTMIGCYTRAGEHDVAFSMYNIM--RRQG----IQPSSVT 151
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
+ L + V + + + +H + + G +++L S++N Y K +EDA +F +
Sbjct: 152 MLGLLSGV--LELVHLQCLHACVIQYGFGSDVALANSMLNVYCKCGRVEDAQALFELMDA 209
Query: 181 HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQ 240
+ + W + + + G+ +V M + I+ + TF S++ A G G+
Sbjct: 210 RDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQQTFGSLVSAAAMQSKLG-VGKM 268
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
+H +I++ GLE D +++ L+ MY KC + A R+FE ++ K++ SW AM+ G ++N
Sbjct: 269 VHGHILRAGLEQDSHIETSLIGMYLKCGNVNSAFRIFEGMM-HKDVISWTAMISGLVQND 327
Query: 301 LYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
A M S + + I + AC+ + +
Sbjct: 328 CADMAVTVFRRMLKSRVMPSTATIASVLAACAELGS 363
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/265 (23%), Positives = 112/265 (42%), Gaps = 14/265 (5%)
Query: 28 GAFELLNHIRK---RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMI 84
G+F L + R IK + N L+ M+ CG L+ + +FD M RD SW ++
Sbjct: 362 GSFPLGTSVHGYILRQRIKLDIPSQNSLVTMYAKCGHLEQSCSVFDRMSRRDIVSWNAIV 421
Query: 85 VGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLL 143
G+ + + LF EM K ++ P I +V +L+AC + GK +H +
Sbjct: 422 SGHAQNGHLCKALLLFNEMRKARQR------PDSITVVSLLQACASIGALHQGKWIHNFV 475
Query: 144 FKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVF 203
K I + +L++ Y K L A F ++ + + V W++ I G
Sbjct: 476 TKSCLGPCILIDTALVDMYSKCGDLGSAQKCFDRMPQQDLVSWSSIIAGYGSHGKGETAL 535
Query: 204 NDFKEMGRERIKKNSYTFSSVLKACG--GVDDDGNCGRQMHANIVKIGLESDEYVQCGLV 261
+ + I+ N + S+L AC G+ D G H+ G+E + +V
Sbjct: 536 RMYSDFLHTGIQPNHVIYLSILSACSHNGLVDQGLSF--FHSMTKDFGIEPRLEHRACIV 593
Query: 262 DMYGKCRLLRDAERVFELIVDKKNI 286
D+ + + +A ++ + K ++
Sbjct: 594 DLLSRAGRVEEAYSFYKRMFPKPSM 618
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 2/122 (1%)
Query: 197 GHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYV 256
G F V + M +++TF S++KAC +D + G H ++ G SD Y+
Sbjct: 27 GAFCDVLLTYSSMLSTDTPPDAHTFPSLVKACTSLDLFSH-GLSFHQRVIVDGYSSDSYI 85
Query: 257 QCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASG 316
L++ Y K + A +VF+ +D +N+ W M+ Y R G + A +M+ G
Sbjct: 86 ATSLINFYSKFGHNQSARKVFD-TMDDRNVVPWTTMIGCYTRAGEHDVAFSMYNIMRRQG 144
Query: 317 IQ 318
IQ
Sbjct: 145 IQ 146
>gi|347954468|gb|AEP33734.1| chlororespiratory reduction 21, partial [Lepidium virginicum]
Length = 788
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 84/330 (25%), Positives = 157/330 (47%), Gaps = 16/330 (4%)
Query: 8 ITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFL-NRLLLMHVSCGQLDTAR 66
I ++Y +++ C +++D ++ I K + ++ +LL+ + C ++ A+
Sbjct: 28 IGPEIYGEILQGCVYERDLCTGQQIHARILKNGDFYARNQYIETKLLIFYAKCDAIEVAQ 87
Query: 67 QLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCVLK 125
LF + +R+ SWA +I + + +T F EM++ V P +++ V K
Sbjct: 88 NLFSRLRVRNVFSWAAIIGLKCRIGLCEGALTGFVEMIENG------VLPDNYVVPNVCK 141
Query: 126 ACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVV 185
AC G+ VHG L K G + + SL + YGK L DA VF ++ N V
Sbjct: 142 ACGALQWTWFGRGVHGYLVKAGLHDCVFVASSLADMYGKCGVLNDARKVFDKIPERNVVA 201
Query: 186 WTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG---GVDDDGNCGRQMH 242
W A +V + G + +M +E I+ T S+ L A G+++ G+Q H
Sbjct: 202 WNALMVGYVQNGMNEEAIRLLSDMRKEGIEPTRVTVSTCLSASANIRGIEE----GKQSH 257
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
A + GLE D + +++ Y K L+ AE +F+ +++ K++ +WN ++ GY++ GL
Sbjct: 258 AIAIVNGLEMDNILGTSILNFYCKVGLVEYAEMIFDRMIE-KDVVTWNLLISGYVQQGLV 316
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIACS 332
+A LM+ ++ ++ L A +
Sbjct: 317 DDAIHMCKLMRLENLRYDSVTLSTLMSAAA 346
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/264 (29%), Positives = 133/264 (50%), Gaps = 9/264 (3%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+ CG L+ AR++FD++P R+ +W ++VGYV +E I L ++M RK+G +
Sbjct: 177 MYGKCGVLNDARKVFDKIPERNVVAWNALMVGYVQNGMNEEAIRLLSDM--RKEG----I 230
Query: 115 FPAWIIVCV-LKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADF 173
P + V L A +E GKQ H + G + L S++NFY K +E A+
Sbjct: 231 EPTRVTVSTCLSASANIRGIEEGKQSHAIAIVNGLEMDNILGTSILNFYCKVGLVEYAEM 290
Query: 174 VFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDD 233
+F ++ + V W I ++G + K M E ++ +S T S+++ A +
Sbjct: 291 IFDRMIEKDVVTWNLLISGYVQQGLVDDAIHMCKLMRLENLRYDSVTLSTLMSAAARTHN 350
Query: 234 DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
G+++ ++ ES+ + VDMY KC + DA++VF+ V+ K++ WN +L
Sbjct: 351 L-KLGKEVQCYCIRHCFESEIVLASTAVDMYAKCGSIVDAKKVFDSTVE-KDLILWNTLL 408
Query: 294 VGYIRNGLYVEATKFLYLMKASGI 317
Y +GL EA + Y M+ +
Sbjct: 409 AAYADSGLSGEALRLFYDMQLESV 432
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 88/198 (44%), Gaps = 10/198 (5%)
Query: 41 NIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMP----LRDFNSWAVMIVGYVDVADYQEC 96
++ P ++ N ++L + GQ+D A+++F +M + SW M+ G V +E
Sbjct: 431 SVPPNMITWNSIILSLLRNGQVDEAKEMFLQMQSSGIFPNLISWTTMMNGLVQNGCSEEA 490
Query: 97 ITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFK-LGSSRNISLT 155
I +M + L ++ I L AC ++ G+ +HG + + L S ++S
Sbjct: 491 INFLRKMQESG-----LRPNSFSITVALSACAHLASLNFGRSIHGYIIRNLQHSSSVSFV 545
Query: 156 GSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIK 215
SL++ Y K + A+ F ++ A I G+ + ++ + IK
Sbjct: 546 TSLVDMYAKCGDINQAEKAFGSKLYDELPLYNAMISAYALYGNMKEAIALYRRLEDMAIK 605
Query: 216 KNSYTFSSVLKACGGVDD 233
+S TF+S+L AC D
Sbjct: 606 PDSITFTSLLSACSHAGD 623
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 60/285 (21%), Positives = 116/285 (40%), Gaps = 38/285 (13%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
+L + G ++ A +FD M +D +W ++I GYV + I + ++M+ +
Sbjct: 275 ILNFYCKVGLVEYAEMIFDRMIEKDVVTWNLLISGYVQQGLVDDAIHM-CKLMRLEN--- 330
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
L + + + ++ A T N++LGK+V + I L + ++ Y K + DA
Sbjct: 331 -LRYDSVTLSTLMSAAARTHNLKLGKEVQCYCIRHCFESEIVLASTAVDMYAKCGSIVDA 389
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
VF + ++W + G + F +M E + N T++S++ +
Sbjct: 390 KKVFDSTVEKDLILWNTLLAAYADSGLSGEALRLFYDMQLESVPPNMITWNSIILS---- 445
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
++ G VD + L + +F N+ SW
Sbjct: 446 -----------------------LLRNGQVDEAKEMFLQMQSSGIF------PNLISWTT 476
Query: 292 MLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
M+ G ++NG EA FL M+ SG++ I AC+ +++
Sbjct: 477 MMNGLVQNGCSEEAINFLRKMQESGLRPNSFSITVALSACAHLAS 521
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 63/285 (22%), Positives = 111/285 (38%), Gaps = 51/285 (17%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+ CG + A+++FD +D W ++ Y D E + LF +M ++
Sbjct: 379 MYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAYADSGLSGEALRLFYDMQLESVPPNMIT 438
Query: 115 FPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFV 174
+ + II+ +L+ QV ++A +
Sbjct: 439 WNS-IILSLLR----------NGQV-----------------------------DEAKEM 458
Query: 175 FSQLKRH----NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
F Q++ N + WT + + G + N ++M ++ NS++ + L AC
Sbjct: 459 FLQMQSSGIFPNLISWTTMMNGLVQNGCSEEAINFLRKMQESGLRPNSFSITVALSACAH 518
Query: 231 VDDDGNCGRQMHANIVKIGLESDEYVQ--CGLVDMYGKCRLLRDAERVF-ELIVDKKNIA 287
+ N GR +H I++ L+ V LVDMY KC + AE+ F + D+ +
Sbjct: 519 LASL-NFGRSIHGYIIR-NLQHSSSVSFVTSLVDMYAKCGDINQAEKAFGSKLYDE--LP 574
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+NAM+ Y G EA ++ I+ L ACS
Sbjct: 575 LYNAMISAYALYGNMKEAIALYRRLEDMAIKPDSITFTSLLSACS 619
Score = 45.1 bits (105), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 66/143 (46%), Gaps = 4/143 (2%)
Query: 194 CREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIG--LE 251
C+ G + KEM ++ + +L+ C + D G+Q+HA I+K G
Sbjct: 6 CKHGEIREALRLVKEMEFRNVRIGPEIYGEILQGC-VYERDLCTGQQIHARILKNGDFYA 64
Query: 252 SDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYL 311
++Y++ L+ Y KC + A+ +F + +N+ SW A++ R GL A
Sbjct: 65 RNQYIETKLLIFYAKCDAIEVAQNLFSRL-RVRNVFSWAAIIGLKCRIGLCEGALTGFVE 123
Query: 312 MKASGIQIQESLINDLRIACSSI 334
M +G+ ++ ++ AC ++
Sbjct: 124 MIENGVLPDNYVVPNVCKACGAL 146
>gi|115480209|ref|NP_001063698.1| Os09g0520300 [Oryza sativa Japonica Group]
gi|113631931|dbj|BAF25612.1| Os09g0520300 [Oryza sativa Japonica Group]
Length = 657
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 83/293 (28%), Positives = 133/293 (45%), Gaps = 19/293 (6%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL V G ++ A +LFDEMP + +W +++G+ + ++C+ LF +M
Sbjct: 196 LLHAFVVSGHMELAHELFDEMPSKSNVAWNTLLMGHSRSGNAKQCLALFNQMWMSG---- 251
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLG-----------SSRNISLTGSLIN 160
L + ++ AC + G +H ++ + G +R + SLI+
Sbjct: 252 -LTCDDATLCILVDACAELPDPSTGFAIHKVVVQSGWNGIPEIFESMKTRTTASWNSLID 310
Query: 161 FYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDF-KEMGRERIKKNSY 219
+ +F +E A +F N + WTA I R + F K + +E I+ + +
Sbjct: 311 AHARFGYIEQAALLFESAPETNIISWTAMIGGFARNSLTSEALAHFVKMLTQEYIQPDDF 370
Query: 220 TFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFEL 279
TF +VL AC + GR +H+ + G S YV LVDMY KC + A VF+
Sbjct: 371 TFGAVLHACASAPCLAS-GRMVHSCAFQGGFASYLYVANNLVDMYAKCGDVEGANNVFDA 429
Query: 280 IVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
I +K++ SWN ML G+ NGL EA + +M + E L ACS
Sbjct: 430 I-HQKDLVSWNTMLFGFAINGLPKEALEVYEIMTYHNVSPDEVTFTGLLTACS 481
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/267 (22%), Positives = 114/267 (42%), Gaps = 19/267 (7%)
Query: 17 IKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRD 76
I + Q G E+ ++ R T N L+ H G ++ A LF+ P +
Sbjct: 278 IHKVVVQSGWNGIPEIFESMKTR-----TTASWNSLIDAHARFGYIEQAALLFESAPETN 332
Query: 77 FNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPA-WIIVCVLKACVCTMNMEL 135
SW MI G+ + E + F +M+ ++ + P + VL AC +
Sbjct: 333 IISWTAMIGGFARNSLTSEALAHFVKMLTQE-----YIQPDDFTFGAVLHACASAPCLAS 387
Query: 136 GKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCR 195
G+ VH F+ G + + + +L++ Y K +E A+ VF + + + V W +
Sbjct: 388 GRMVHSCAFQGGFASYLYVANNLVDMYAKCGDVEGANNVFDAIHQKDLVSWNTMLFGFAI 447
Query: 196 EGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--GGVDDDGNCGRQMHANIVKI-GLES 252
G + ++ M + + TF+ +L AC G+ + GR +++ + G++
Sbjct: 448 NGLPKEALEVYEIMTYHNVSPDEVTFTGLLTACSHSGLLEQ---GRAFFESMMSVHGVQP 504
Query: 253 -DEYVQCGLVDMYGKCRLLRDAERVFE 278
E++ C ++DMY + + A + E
Sbjct: 505 KPEHLSC-VLDMYARSGNIAKAIEMME 530
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 68/309 (22%), Positives = 116/309 (37%), Gaps = 54/309 (17%)
Query: 68 LFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKAC 127
+FD MP RD +W M+ Y A + + LFA M + L A
Sbjct: 84 VFDAMPRRDAVAWNAMLTAYARAARPRAALALFARMRAPDAF---------SLTAALAAA 134
Query: 128 VCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC-------------------- 167
+ G Q+HG L +LG + + +L++ Y K
Sbjct: 135 AALRSPAAGAQLHGRLLRLGLRAPLPVGNALVSMYAKCARAADAARAFREMPERNALSWC 194
Query: 168 -----------LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKK 216
+E A +F ++ + V W ++ + R G+ Q F +M +
Sbjct: 195 SLLHAFVVSGHMELAHELFDEMPSKSNVAWNTLLMGHSRSGNAKQCLALFNQMWMSGLTC 254
Query: 217 NSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLES-DEYVQC----------GLVDMYG 265
+ T ++ AC + D + G +H +V+ G E + L+D +
Sbjct: 255 DDATLCILVDACAELPDP-STGFAIHKVVVQSGWNGIPEIFESMKTRTTASWNSLIDAHA 313
Query: 266 KCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEA-TKFLYLMKASGIQIQESLI 324
+ + A +FE + NI SW AM+ G+ RN L EA F+ ++ IQ +
Sbjct: 314 RFGYIEQAALLFE-SAPETNIISWTAMIGGFARNSLTSEALAHFVKMLTQEYIQPDDFTF 372
Query: 325 NDLRIACSS 333
+ AC+S
Sbjct: 373 GAVLHACAS 381
>gi|410109983|gb|AFV61071.1| pentatricopeptide repeat-containing protein 81, partial [Lantana
canescens]
Length = 391
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 80/290 (27%), Positives = 140/290 (48%), Gaps = 12/290 (4%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMP-LRDFNSWAVMIVGYVDVADYQEC-ITLFAEMMKR 106
LN + + C ++ A+++FD RD +W M+ Y++ + +EC + +F EM+++
Sbjct: 97 LNATITAYAECRCIEDAKRVFDSSDGYRDLVTWNSMLAAYLE-HNLEECGVNIFLEMVRQ 155
Query: 107 KKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF- 165
+ L A+ + V+ AC LGK +H L+ K G ++ +L++ Y K
Sbjct: 156 R-----LEMDAYTLSSVISACFEDTQQSLGKSLHALVIKKGLDEVTQISNALVSMYLKSN 210
Query: 166 -RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
R +EDA +F + + V W + + G F+ + + + + YTF++V
Sbjct: 211 SRNVEDALKIFERXNVKDLVSWNTILTGLSQNGLSENALRLFQNIHVDHLVIDQYTFAAV 270
Query: 225 LKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
L++C + GRQ+H +VK G E +EYV L+ MY KC ++ DA FE K+
Sbjct: 271 LRSCSDLAT-LQLGRQIHVLVVKSGFEGNEYVASALIFMYSKCGIIEDAWESFE-SSHKE 328
Query: 285 NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
+WN+++ Y ++G A YLM I++ ACS I
Sbjct: 329 TSVTWNSIIFAYAQHGQGKIALDLFYLMTERHIKLDHVTFVAALTACSHI 378
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 77/288 (26%), Positives = 137/288 (47%), Gaps = 10/288 (3%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+ C +++ A +F M R+ SW +I GY ++ + + C++LF M + +
Sbjct: 2 MYAKCRRVEDASXVFKYMRERNAVSWNALIGGYAEMGNLERCVSLFVGMERDG-----VR 56
Query: 115 FPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFV 174
+L + +L +Q+HG + K G ++ + I Y + RC+EDA V
Sbjct: 57 VDDATFAPLLTLLNDAESYDLTRQLHGKIMKHGLEYENTVLNATITAYAECRCIEDAKRV 116
Query: 175 F-SQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDD 233
F S + V W + + N F EM R+R++ ++YT SSV+ AC D
Sbjct: 117 FDSSDGYRDLVTWNSMLAAYLEHNLEECGVNIFLEMVRQRLEMDAYTLSSVISACFE-DT 175
Query: 234 DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGK--CRLLRDAERVFELIVDKKNIASWNA 291
+ G+ +HA ++K GL+ + LV MY K R + DA ++FE + K++ SWN
Sbjct: 176 QQSLGKSLHALVIKKGLDEVTQISNALVSMYLKSNSRNVEDALKIFER-XNVKDLVSWNT 234
Query: 292 MLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKI 339
+L G +NGL A + + + I + + +CS ++ ++
Sbjct: 235 ILTGLSQNGLSENALRLFQNIHVDHLVIDQYTFAAVLRSCSDLATLQL 282
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 73/142 (51%), Gaps = 1/142 (0%)
Query: 160 NFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSY 219
+ Y K R +EDA VF ++ N V W A I G+ + + F M R+ ++ +
Sbjct: 1 DMYAKCRRVEDASXVFKYMRERNAVSWNALIGGYAEMGNLERCVSLFVGMERDGVRVDDA 60
Query: 220 TFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFEL 279
TF+ +L + + RQ+H I+K GLE + V + Y +CR + DA+RVF+
Sbjct: 61 TFAPLLTLLNDAES-YDLTRQLHGKIMKHGLEYENTVLNATITAYAECRCIEDAKRVFDS 119
Query: 280 IVDKKNIASWNAMLVGYIRNGL 301
+++ +WN+ML Y+ + L
Sbjct: 120 SDGYRDLVTWNSMLAAYLEHNL 141
>gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
[Cucumis sativus]
Length = 1573
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 81/290 (27%), Positives = 145/290 (50%), Gaps = 25/290 (8%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ ++ G++D A L D SW ++ GY+ ++ + F+ M + M
Sbjct: 1039 LIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHE-----M 1093
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+ + +KA C +N++ GKQ+ KLG + ++ ++ +++ Y K + +A
Sbjct: 1094 GIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNA 1153
Query: 172 DFVFSQLKRHNTVVWTAKI---VNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+F ++ R + V WT I + N E H V++ + G ++ + YTF++++KA
Sbjct: 1154 LELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSG---VQPDEYTFATLIKAS 1210
Query: 229 GGVDDDGNC------GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282
+C G+Q+HAN+VK+ D +V LVDMY KC ++DA RVF + D
Sbjct: 1211 -------SCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKM-D 1262
Query: 283 KKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+ + WNAML+G ++G EA M+++GIQ + + ACS
Sbjct: 1263 VRKVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACS 1312
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 80/301 (26%), Positives = 132/301 (43%), Gaps = 10/301 (3%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
+ + P + N L+ M+ G + A + F P D SW MI Y E I
Sbjct: 922 KSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAIC 981
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNME---LGKQVHGLLFKLGSSRNISLT 155
F ++++ L + + VL+AC E LG QVH K G + ++
Sbjct: 982 TFRDLLRDG-----LKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSFVS 1036
Query: 156 GSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIK 215
+LI+ Y K +++A+F+ + W A + + + F M I
Sbjct: 1037 TALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIP 1096
Query: 216 KNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAER 275
+ T ++ +KA G + + G+Q+ A +K+G +D +V G++DMY KC + +A
Sbjct: 1097 IDEITLATAIKASGCLINLKQ-GKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALE 1155
Query: 276 VFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
+F I +A W M+ GYI NG A +LM+ SG+Q E L A S ++
Sbjct: 1156 LFGEISRPDEVA-WTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLT 1214
Query: 336 A 336
A
Sbjct: 1215 A 1215
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 120/246 (48%), Gaps = 10/246 (4%)
Query: 79 SWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQ 138
+W + ++ I F +++ GH + +V +L A V +++LG+Q
Sbjct: 861 AWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGH-----DSVTLVIILSAAVGADDLDLGEQ 915
Query: 139 VHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGH 198
+H L+ K + + ++ SL+N Y K + A+ F + + W I + +
Sbjct: 916 IHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNL 975
Query: 199 FHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDG---NCGRQMHANIVKIGLESDEY 255
+ F+++ R+ +K + +T +SVL+AC D+G G Q+H +K G+ +D +
Sbjct: 976 EMEAICTFRDLLRDGLKPDQFTLASVLRAC-STGDEGEYFTLGSQVHVYAIKCGIINDSF 1034
Query: 256 VQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKAS 315
V L+D+Y K + +AE + D ++ASWNA++ GYI++ +A + LM
Sbjct: 1035 VSTALIDLYSKGGKMDEAEFLLHGKYD-FDLASWNAIMFGYIKSNKSRKALEHFSLMHEM 1093
Query: 316 GIQIQE 321
GI I E
Sbjct: 1094 GIPIDE 1099
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 68/244 (27%), Positives = 115/244 (47%), Gaps = 9/244 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
+L M++ CG + A +LF E+ D +W MI GY++ D ++++ M R G
Sbjct: 1140 VLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLM--RVSG-- 1195
Query: 112 LLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
V P + ++KA C +E GKQ+H + KL S + + SL++ Y K ++D
Sbjct: 1196 --VQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQD 1253
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
A VF ++ V W A ++ + GH + N F+ M I+ + TF VL AC
Sbjct: 1254 AYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSH 1313
Query: 231 VDDDGNCGRQMHANIVKIGLESD-EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ A G+ + E+ C LVD G+ +++AE V + K + + +
Sbjct: 1314 SGLFSEAYKYFDAMFKTYGITPEIEHYSC-LVDALGRAGRIQEAENVIASMPFKASASMY 1372
Query: 290 NAML 293
A+L
Sbjct: 1373 RALL 1376
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 98/212 (46%), Gaps = 19/212 (8%)
Query: 44 PTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQ-----ECIT 98
P N L+ M+ CG L +ARQ+FD+ RD +W ++ Y AD E
Sbjct: 644 PDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYAQFADSSYENVLEGFR 703
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
LF + R+ G + + +LK C+ + +++ + VHG K+G ++ ++G+L
Sbjct: 704 LFG--LLREFGFSITRL---TLAPLLKLCLLSGFVQVSETVHGYAVKIGFELDLFVSGAL 758
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKI---VNNCREGHFHQVFNDFKEMGRERIK 215
+N Y K+ + A +F ++ + V+W + V N + + F+ F G
Sbjct: 759 VNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFFP-- 816
Query: 216 KNSYTFSSVLKACGGVDDDGNCGRQMHANIVK 247
FS++ GGV+ D + R+ HA VK
Sbjct: 817 ----DFSNLHCVIGGVNSDVSNNRKRHAEQVK 844
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 83/196 (42%), Gaps = 5/196 (2%)
Query: 125 KACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTV 184
++ + +++LGK+ H + G + LT +LI Y K L A VF + + V
Sbjct: 619 RSAIAMADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLV 678
Query: 185 VWTAKIVNNCR--EGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDG--NCGRQ 240
W + + + + + V F+ G R S T ++ G
Sbjct: 679 TWNSILAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSET 738
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
+H VKIG E D +V LV++Y K L+ A +F+ + ++ + WN ML Y+ N
Sbjct: 739 VHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVL-WNVMLKAYVENS 797
Query: 301 LYVEATKFLYLMKASG 316
EA +F SG
Sbjct: 798 FQDEALRFFSAFHRSG 813
>gi|225446273|ref|XP_002266689.1| PREDICTED: pentatricopeptide repeat-containing protein At2g34400
[Vitis vinifera]
gi|296090299|emb|CBI40118.3| unnamed protein product [Vitis vinifera]
Length = 618
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 84/291 (28%), Positives = 135/291 (46%), Gaps = 7/291 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+ L+ M+ CG+L AR++FDE+ +D SW MI GY + + + LF EM R G
Sbjct: 165 HSLITMYSRCGELGCARRVFDEISEKDLVSWNSMISGYSRMGYAGDAVGLFGEM--RDAG 222
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+V +L AC ++ LG + G + + N + +LI YGK L
Sbjct: 223 ---FEPDEMTLVSILGACGDLGDLGLGSWIEGFVVENEMDLNSFVGSALIGMYGKCGDLS 279
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A VF ++ + + V W A I + G + F M + + T VL AC
Sbjct: 280 SARRVFDRMVKKDVVTWNAMITGYAQNGVSDEAIILFSGMRESGVNPDKITLVGVLSACA 339
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ + G+ + + GL++D YV L+DMY KC L DA RVFE + +KN SW
Sbjct: 340 SIGAL-DFGKWLDTYASERGLQNDIYVSTALIDMYAKCGSLDDALRVFE-DMPQKNEVSW 397
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKIN 340
NAM+ +G E+ M G ++ + I+ + + + + A ++
Sbjct: 398 NAMISALAFHGRPQESLSLFKRMSKEGGAVRPNDISFIGVLSACVHAGLVD 448
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 91/332 (27%), Positives = 145/332 (43%), Gaps = 24/332 (7%)
Query: 10 TDMYTCLIKECTFQKDSAGAFELLNHIRKRVNI----KPTLLFLNRLLLMHVSCGQLDTA 65
TD L+K+CT K L I ++ I KP N LL + + A
Sbjct: 31 TDKLLSLLKQCTSTKS-------LQQIHTQMIINAIHKP-----NFLLHRFIDLKDFNNA 78
Query: 66 RQLFDEMPLRDFNSWAVMIVGYVDV-ADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVL 124
LF ++P + ++ +MI G + I + +M +P V
Sbjct: 79 SLLFSQIPYPNEYAFNIMIRGLTTTWQKFNLTIEFYYQMKDFGIRPNNFTYP-----FVF 133
Query: 125 KACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTV 184
AC + + G+ H + K G + + SLI Y + L A VF ++ + V
Sbjct: 134 IACANLLVLNHGQCAHSGVLKSGLCADGHVRHSLITMYSRCGELGCARRVFDEISEKDLV 193
Query: 185 VWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHAN 244
W + I R G+ F EM + + T S+L ACG + D G G +
Sbjct: 194 SWNSMISGYSRMGYAGDAVGLFGEMRDAGFEPDEMTLVSILGACGDLGDLG-LGSWIEGF 252
Query: 245 IVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVE 304
+V+ ++ + +V L+ MYGKC L A RVF+ +V KK++ +WNAM+ GY +NG+ E
Sbjct: 253 VVENEMDLNSFVGSALIGMYGKCGDLSSARRVFDRMV-KKDVVTWNAMITGYAQNGVSDE 311
Query: 305 ATKFLYLMKASGIQIQESLINDLRIACSSISA 336
A M+ SG+ + + + AC+SI A
Sbjct: 312 AIILFSGMRESGVNPDKITLVGVLSACASIGA 343
>gi|413944893|gb|AFW77542.1| putative pentatricopeptide repeat family protein [Zea mays]
Length = 829
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 85/258 (32%), Positives = 126/258 (48%), Gaps = 14/258 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMP--LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRK 107
N LL ++ C + AR +FD MP LRD SW M E + LF E ++
Sbjct: 88 NSLLTLYSKCSAVAAARSVFDGMPVGLRDLVSWTAMASCLSRNGAEAEALRLFGETLEEG 147
Query: 108 KGHMLLVFPAWIIVCVLKACVCTMNMEL-GKQVHGLLFKLGS-SRNISLTGSLINFYGKF 165
L+ A+ + +AC + L G V GL+FKLG ++S+ +LI+ + K
Sbjct: 148 -----LLPNAFTLCAATQACFASELFHLAGGAVLGLVFKLGFWGTDVSVGCALIDMFAKN 202
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
L VF L VVWT I + G+ + F +M + + YT SS+L
Sbjct: 203 GDLVAMRRVFDGLFERTVVVWTLLITRYAQSGYSDEAVELFLDMLENGFQPDQYTLSSML 262
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKC---RLLRDAERVFELIVD 282
AC + G+Q+H+ +++GLESD V CGLVDMY K + L +A VF +
Sbjct: 263 SACTELGS-FRLGQQLHSLALRLGLESDSCVSCGLVDMYAKSHNGQSLHNAREVFNRM-P 320
Query: 283 KKNIASWNAMLVGYIRNG 300
K N+ +W A+L GY++ G
Sbjct: 321 KHNVMAWTALLSGYVQRG 338
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 75/290 (25%), Positives = 136/290 (46%), Gaps = 27/290 (9%)
Query: 57 VSCGQLD------------TARQLFDEMPLRDFNSWAVMIVGYVDVADY-QECITLFAEM 103
VSCG +D AR++F+ MP + +W ++ GYV + + LF +M
Sbjct: 292 VSCGLVDMYAKSHNGQSLHNAREVFNRMPKHNVMAWTALLSGYVQRGSQDNQVMILFCKM 351
Query: 104 MKRKKGHMLLVFPAWIIVC-VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFY 162
+ + P I +LKAC + + G+Q+H K + + +L++ Y
Sbjct: 352 LNEG------IRPNHITYSSMLKACANLGDQDSGRQIHTHCVKSNLADLNVVGNALVSMY 405
Query: 163 GKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFS 222
+ +E+A F QL N V ++ + + R + D+ ++ R + +++TF
Sbjct: 406 AESGSIEEARHAFDQLYEKNMVSFSGNLDGDGRS----NTYQDY-QIERMELGISTFTFG 460
Query: 223 SVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282
S++ A V G+++HA +K G SD + LV MY +C L DA +VF+ + D
Sbjct: 461 SLISAAASVGMLTK-GQRLHALSLKAGFGSDRAIGNSLVSMYSRCGYLVDACQVFDEMND 519
Query: 283 KKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
N+ SW +M+ G ++G A + + M A+G++ + + ACS
Sbjct: 520 -HNVISWTSMISGLAKHGYAARALELFHDMIAAGVKPNDVTYIAVLSACS 568
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/274 (23%), Positives = 116/274 (42%), Gaps = 37/274 (13%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
Y+ ++K C D ++ H K N+ + N L+ M+ G ++ AR FD++
Sbjct: 363 YSSMLKACANLGDQDSGRQIHTHCVKS-NLADLNVVGNALVSMYAESGSIEEARHAFDQL 421
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN 132
++ S++ + G YQ+ ++R M L + ++ A
Sbjct: 422 YEKNMVSFSGNLDGDGRSNTYQD------YQIER----MELGISTFTFGSLISAAASVGM 471
Query: 133 MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192
+ G+++H L K G + ++ SL++ Y + L DA VF ++ HN + WT+ I
Sbjct: 472 LTKGQRLHALSLKAGFGSDRAIGNSLVSMYSRCGYLVDACQVFDEMNDHNVISWTSMISG 531
Query: 193 NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLES 252
+ G+ + F +M +K N T+ +VL AC HA +VK G E
Sbjct: 532 LAKHGYAARALELFHDMIAAGVKPNDVTYIAVLSACS------------HAGLVKEGKEH 579
Query: 253 -------------DEYVQCGLVDMYGKCRLLRDA 273
E+ C +VD+ G+ L+ DA
Sbjct: 580 FRMMQKHHGLIPRMEHYAC-MVDLLGRSGLVEDA 612
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 94/214 (43%), Gaps = 6/214 (2%)
Query: 132 NMELGKQVHGLLFKLGS--SRNISLTGSLINFYGKFRCLEDADFVFSQLK--RHNTVVWT 187
++ LG+ + G L + GS + + SL+ Y K + A VF + + V WT
Sbjct: 62 DIHLGRALQGHLLRTGSLLETDAVVANSLLTLYSKCSAVAAARSVFDGMPVGLRDLVSWT 121
Query: 188 AKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVK 247
A R G + F E E + N++T + +AC + G + + K
Sbjct: 122 AMASCLSRNGAEAEALRLFGETLEEGLLPNAFTLCAATQACFASELFHLAGGAVLGLVFK 181
Query: 248 IGL-ESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEAT 306
+G +D V C L+DM+ K L RVF+ + ++ + W ++ Y ++G EA
Sbjct: 182 LGFWGTDVSVGCALIDMFAKNGDLVAMRRVFDGLFER-TVVVWTLLITRYAQSGYSDEAV 240
Query: 307 KFLYLMKASGIQIQESLINDLRIACSSISASKIN 340
+ M +G Q + ++ + AC+ + + ++
Sbjct: 241 ELFLDMLENGFQPDQYTLSSMLSACTELGSFRLG 274
>gi|359483391|ref|XP_003632946.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g04370-like [Vitis vinifera]
Length = 732
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 84/284 (29%), Positives = 140/284 (49%), Gaps = 13/284 (4%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYV--DVADYQECITLFAEMMKRKKG 109
L+ M++ CG +++A ++F+ M +D SW MI G V D AD +T+F M+K +
Sbjct: 288 LIGMYLKCGNVNSAFRIFEGMMHKDVISWTAMISGLVQNDCADM--AVTVFRRMLKSR-- 343
Query: 110 HMLLVFPAW-IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
V P+ I VL AC + LG VHG + + +I SL+ Y K L
Sbjct: 344 ----VMPSTATIASVLAACAELGSFPLGTSVHGYILRQRIKLDIPSQNSLVTMYAKCGHL 399
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
E + VF ++ R + V W A + + + GH + F EM + R + +S T S+L+AC
Sbjct: 400 EQSCSVFDRMSRRDIVSWNAIVSGHAQNGHLCKALLLFNEMRKARQRPDSITVVSLLQAC 459
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
+ + G+ +H + K L + LVDMY KC L A++ F+ + ++++ S
Sbjct: 460 ASIGAL-HQGKWIHNFVTKSCLGPCILIDTALVDMYSKCGDLGSAQKCFDRM-PQQDLVS 517
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
W++++ GY +G A + +GIQ + + ACS
Sbjct: 518 WSSIIAGYGSHGKGETALRMYSDFLHTGIQPNHVIYLSILSACS 561
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 134/287 (46%), Gaps = 7/287 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N +L ++ CG+++ A+ LF+ M RD SW ++ GY + + +E + L M
Sbjct: 185 NSMLNVYCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIE 244
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
F + + +++ + +GK VHG + + G ++ + SLI Y K +
Sbjct: 245 PDQQTFGSLVSAAAMQS-----KLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKCGNVN 299
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A +F + + + WTA I + F+ M + R+ ++ T +SVL AC
Sbjct: 300 SAFRIFEGMMHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASVLAACA 359
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ G +H I++ ++ D Q LV MY KC L + VF+ + +++I SW
Sbjct: 360 EL-GSFPLGTSVHGYILRQRIKLDIPSQNSLVTMYAKCGHLEQSCSVFDRM-SRRDIVSW 417
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
NA++ G+ +NG +A M+ + + + L AC+SI A
Sbjct: 418 NAIVSGHAQNGHLCKALLLFNEMRKARQRPDSITVVSLLQACASIGA 464
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 77/336 (22%), Positives = 152/336 (45%), Gaps = 23/336 (6%)
Query: 7 PITTDMYTCLIKECTFQKDSAGAFELLNH---IRKRVNI---KPTLLFLNRLLLMHVSCG 60
P + L+K CT + +L +H +RV + L+ + G
Sbjct: 45 PPDAHTFPSLVKACT-------SLDLFSHGLSFHQRVIVDGYSSDSYIATSLINFYSKFG 97
Query: 61 QLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWII 120
+AR++FD M R+ W MI Y ++ +++ M R++G + P+ +
Sbjct: 98 HNQSARKVFDTMDDRNVVPWTTMIGCYTRAGEHDVAFSMYNIM--RRQG----IQPSSVT 151
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
+ L + V + + + +H + + G +++L S++N Y K +EDA +F +
Sbjct: 152 MLGLLSGV--LELVHLQCLHACVIQYGFGSDVALANSMLNVYCKCGRVEDAQALFELMDA 209
Query: 181 HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQ 240
+ + W + + + G+ +V M + I+ + TF S++ A G G+
Sbjct: 210 RDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQQTFGSLVSAAAMQSKLG-VGKM 268
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
+H +I++ GLE D +++ L+ MY KC + A R+FE ++ K++ SW AM+ G ++N
Sbjct: 269 VHGHILRAGLEQDSHIETSLIGMYLKCGNVNSAFRIFEGMM-HKDVISWTAMISGLVQND 327
Query: 301 LYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
A M S + + I + AC+ + +
Sbjct: 328 CADMAVTVFRRMLKSRVMPSTATIASVLAACAELGS 363
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/265 (23%), Positives = 112/265 (42%), Gaps = 14/265 (5%)
Query: 28 GAFELLNHIRK---RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMI 84
G+F L + R IK + N L+ M+ CG L+ + +FD M RD SW ++
Sbjct: 362 GSFPLGTSVHGYILRQRIKLDIPSQNSLVTMYAKCGHLEQSCSVFDRMSRRDIVSWNAIV 421
Query: 85 VGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLL 143
G+ + + LF EM K ++ P I +V +L+AC + GK +H +
Sbjct: 422 SGHAQNGHLCKALLLFNEMRKARQR------PDSITVVSLLQACASIGALHQGKWIHNFV 475
Query: 144 FKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVF 203
K I + +L++ Y K L A F ++ + + V W++ I G
Sbjct: 476 TKSCLGPCILIDTALVDMYSKCGDLGSAQKCFDRMPQQDLVSWSSIIAGYGSHGKGETAL 535
Query: 204 NDFKEMGRERIKKNSYTFSSVLKACG--GVDDDGNCGRQMHANIVKIGLESDEYVQCGLV 261
+ + I+ N + S+L AC G+ D G H+ G+E + +V
Sbjct: 536 RMYSDFLHTGIQPNHVIYLSILSACSHNGLVDQGL--SFFHSMTKDFGIEPRLEHRACIV 593
Query: 262 DMYGKCRLLRDAERVFELIVDKKNI 286
D+ + + +A ++ + K ++
Sbjct: 594 DLLSRAGRVEEAYSFYKRMFPKPSM 618
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 2/122 (1%)
Query: 197 GHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYV 256
G F V + M +++TF S++KAC +D + G H ++ G SD Y+
Sbjct: 27 GAFCDVLLTYSSMLSTDTPPDAHTFPSLVKACTSLDLFSH-GLSFHQRVIVDGYSSDSYI 85
Query: 257 QCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASG 316
L++ Y K + A +VF+ +D +N+ W M+ Y R G + A +M+ G
Sbjct: 86 ATSLINFYSKFGHNQSARKVFD-TMDDRNVVPWTTMIGCYTRAGEHDVAFSMYNIMRRQG 144
Query: 317 IQ 318
IQ
Sbjct: 145 IQ 146
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.327 0.140 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,035,188,120
Number of Sequences: 23463169
Number of extensions: 198618114
Number of successful extensions: 586265
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 5363
Number of HSP's successfully gapped in prelim test: 2217
Number of HSP's that attempted gapping in prelim test: 501239
Number of HSP's gapped (non-prelim): 37648
length of query: 340
length of database: 8,064,228,071
effective HSP length: 143
effective length of query: 197
effective length of database: 9,003,962,200
effective search space: 1773780553400
effective search space used: 1773780553400
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 77 (34.3 bits)