BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044786
         (340 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4DJ2|A Chain A, Unwinding The Differences Of The Mammalian Period Clock
           Proteins From Crystal Structure To Cellular Function
 pdb|4DJ2|B Chain B, Unwinding The Differences Of The Mammalian Period Clock
           Proteins From Crystal Structure To Cellular Function
 pdb|4DJ2|C Chain C, Unwinding The Differences Of The Mammalian Period Clock
           Proteins From Crystal Structure To Cellular Function
 pdb|4DJ2|D Chain D, Unwinding The Differences Of The Mammalian Period Clock
           Proteins From Crystal Structure To Cellular Function
          Length = 320

 Score = 30.0 bits (66), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 18  KECTFQKDSAGAFELLNHIRKRVNIKPTLLFL---NRLLLMHVSCGQLDTARQLFDEMPL 74
             C FQ     A  LL ++ + +   P LLFL   +R L++ +    L  A Q FD  P+
Sbjct: 184 PSCLFQDVDERAAPLLGYLPQDLLGAPVLLFLHPEDRPLMLAIHKKILQLAGQPFDHSPI 243

Query: 75  R 75
           R
Sbjct: 244 R 244


>pdb|1DMT|A Chain A, Structure Of Human Neutral Endopeptidase Complexed With
           Phosphoramidon
 pdb|1R1H|A Chain A, Structural Analysis Of Neprilysin With Various Specific
           And Potent Inhibitors
 pdb|1R1I|A Chain A, Structural Analysis Of Neprilysin With Various Specific
           And Potent Inhibitors
 pdb|1R1J|A Chain A, Structural Analysis Of Neprilysin With Various Specific
           And Potent Inhibitors
 pdb|1Y8J|A Chain A, Crystal Structure Of Human Nep Complexed With An
           Imidazo[4,5- C]pyridine Inhibitor
 pdb|2QPJ|A Chain A, Human Nep Complexed With A Bifunctional NepDPP IV
           INHIBITOR
 pdb|2YB9|A Chain A, Crystal Structure Of Human Neutral Endopeptidase Complexed
           With A Heteroarylalanine Diacid
          Length = 696

 Score = 28.9 bits (63), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 13/68 (19%)

Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQC---------GLVD-MYGKCRLLRDAERVFEL 279
           G DD  +    +H +  ++GL S +Y +C           VD M    RL+R  ER   L
Sbjct: 152 GTDDKNSVNHVIHIDQPRLGLPSRDYYECTGIYKEACTAYVDFMISVARLIRQEER---L 208

Query: 280 IVDKKNIA 287
            +D+  +A
Sbjct: 209 PIDENQLA 216


>pdb|2K5C|A Chain A, Nmr Structure For Pf0385
          Length = 95

 Score = 28.5 bits (62), Expect = 5.8,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 258 CGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
           CG  + YGK    R+AE+VFEL+ D K    W
Sbjct: 57  CG-EEFYGKTLPRREAEKVFELLNDFKGGIDW 87


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.327    0.140    0.430 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,658,995
Number of Sequences: 62578
Number of extensions: 377493
Number of successful extensions: 804
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 802
Number of HSP's gapped (non-prelim): 4
length of query: 340
length of database: 14,973,337
effective HSP length: 99
effective length of query: 241
effective length of database: 8,778,115
effective search space: 2115525715
effective search space used: 2115525715
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.6 bits)