BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044786
(340 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9C6R9|PPR66_ARATH Pentatricopeptide repeat-containing protein At1g31790
OS=Arabidopsis thaliana GN=PCMP-A1 PE=2 SV=1
Length = 409
Score = 347 bits (889), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 166/331 (50%), Positives = 227/331 (68%), Gaps = 4/331 (1%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCG 60
MD+L LP D+Y+CL KE + D GA EL HI K +I+PT+ F+NRLLLMHVSCG
Sbjct: 79 MDSLSLPGNEDIYSCLAKESARENDQRGAHELQVHIMKS-SIRPTITFINRLLLMHVSCG 137
Query: 61 QLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWII 120
+LD RQ+FD MP RDF+SWA++ +G +++ DY++ LF M+K + + P+WI+
Sbjct: 138 RLDITRQMFDRMPHRDFHSWAIVFLGCIEMGDYEDAAFLFVSMLKHSQKGAFKI-PSWIL 196
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLG--SSRNISLTGSLINFYGKFRCLEDADFVFSQL 178
CVLKAC + ELGKQVH L KLG + L+GSLI FYG+FRCLEDA+ V QL
Sbjct: 197 GCVLKACAMIRDFELGKQVHALCHKLGFIDEEDSYLSGSLIRFYGEFRCLEDANLVLHQL 256
Query: 179 KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCG 238
NTV W AK+ N+ REG F +V DF EMG IKKN FS+VLKAC V D G G
Sbjct: 257 SNANTVAWAAKVTNDYREGEFQEVIRDFIEMGNHGIKKNVSVFSNVLKACSWVSDGGRSG 316
Query: 239 RQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIR 298
+Q+HAN +K+G ESD ++C L++MYGK ++DAE+VF+ D+ +++ WNAM+ Y++
Sbjct: 317 QQVHANAIKLGFESDCLIRCRLIEMYGKYGKVKDAEKVFKSSKDETSVSCWNAMVASYMQ 376
Query: 299 NGLYVEATKFLYLMKASGIQIQESLINDLRI 329
NG+Y+EA K LY MKA+GI+ ++L+N+ +
Sbjct: 377 NGIYIEAIKLLYQMKATGIKAHDTLLNEAHL 407
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 61/132 (46%), Gaps = 4/132 (3%)
Query: 206 FKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGL--ESDEYVQCGLVDM 263
K + K S+ VLKAC + D G+Q+HA K+G E D Y+ L+
Sbjct: 181 LKHSQKGAFKIPSWILGCVLKACAMIRD-FELGKQVHALCHKLGFIDEEDSYLSGSLIRF 239
Query: 264 YGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESL 323
YG+ R L DA V + + +A W A + R G + E + M GI+ S+
Sbjct: 240 YGEFRCLEDANLVLHQLSNANTVA-WAAKVTNDYREGEFQEVIRDFIEMGNHGIKKNVSV 298
Query: 324 INDLRIACSSIS 335
+++ ACS +S
Sbjct: 299 FSNVLKACSWVS 310
>sp|Q0WNP3|PP319_ARATH Pentatricopeptide repeat-containing protein At4g18520
OS=Arabidopsis thaliana GN=PCMP-A2 PE=2 SV=1
Length = 617
Score = 152 bits (385), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 98/319 (30%), Positives = 164/319 (51%), Gaps = 8/319 (2%)
Query: 16 LIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLR 75
++K C+ +K ++ + + KR+ IK + L+ M+ CG++ R++FD M R
Sbjct: 290 ILKACSEEKALRFGRQVHSLVVKRM-IKTDVFVGTSLMDMYAKCGEISDCRKVFDGMSNR 348
Query: 76 DFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMEL 135
+ +W +I + +E I+LF +MKR+ L+ +V +L+AC + L
Sbjct: 349 NTVTWTSIIAAHAREGFGEEAISLF-RIMKRRH----LIANNLTVVSILRACGSVGALLL 403
Query: 136 GKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCR 195
GK++H + K +N+ + +L+ Y K DA V QL + V WTA I
Sbjct: 404 GKELHAQIIKNSIEKNVYIGSTLVWLYCKCGESRDAFNVLQQLPSRDVVSWTAMISGCSS 463
Query: 196 EGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEY 255
GH + + KEM +E ++ N +T+SS LKAC + GR +H+ K S+ +
Sbjct: 464 LGHESEALDFLKEMIQEGVEPNPFTYSSALKACAN-SESLLIGRSIHSIAKKNHALSNVF 522
Query: 256 VQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKAS 315
V L+ MY KC + +A RVF+ + +KN+ SW AM++GY RNG EA K +Y M+A
Sbjct: 523 VGSALIHMYAKCGFVSEAFRVFDSM-PEKNLVSWKAMIMGYARNGFCREALKLMYRMEAE 581
Query: 316 GIQIQESLINDLRIACSSI 334
G ++ + + + C I
Sbjct: 582 GFEVDDYIFATILSTCGDI 600
Score = 132 bits (333), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 88/291 (30%), Positives = 141/291 (48%), Gaps = 7/291 (2%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
+ F N L+ V G L AR++FD MP ++ +W MI GY+ E LF + +K
Sbjct: 117 IYFGNNLISSCVRLGDLVYARKVFDSMPEKNTVTWTAMIDGYLKYGLEDEAFALFEDYVK 176
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
H + + VC+L C ELG+QVHG + K+G N+ + SL+ FY +
Sbjct: 177 ----HGIRFTNERMFVCLLNLCSRRAEFELGRQVHGNMVKVGVG-NLIVESSLVYFYAQC 231
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
L A F ++ + + WTA I R+GH + F M N +T S+L
Sbjct: 232 GELTSALRAFDMMEEKDVISWTAVISACSRKGHGIKAIGMFIGMLNHWFLPNEFTVCSIL 291
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
KAC + GRQ+H+ +VK +++D +V L+DMY KC + D +VF+ + + +N
Sbjct: 292 KACSE-EKALRFGRQVHSLVVKRMIKTDVFVGTSLMDMYAKCGEISDCRKVFDGMSN-RN 349
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+W +++ + R G EA +MK + + + AC S+ A
Sbjct: 350 TVTWTSIIAAHAREGFGEEAISLFRIMKRRHLIANNLTVVSILRACGSVGA 400
Score = 127 bits (318), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 97/328 (29%), Positives = 156/328 (47%), Gaps = 21/328 (6%)
Query: 12 MYTCLIKECTFQKDSAGAFELLNHIRK---RVNIKPTLLFLNRLLLMHVSCGQLDTARQL 68
M+ CL+ C+ + + FEL + +V + L+ + L+ + CG+L +A +
Sbjct: 186 MFVCLLNLCSRRAE----FELGRQVHGNMVKVGVG-NLIVESSLVYFYAQCGELTSALRA 240
Query: 69 FDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVC-VLKAC 127
FD M +D SW +I + I +F M+ H L P VC +LKAC
Sbjct: 241 FDMMEEKDVISWTAVISACSRKGHGIKAIGMFIGMLN----HWFL--PNEFTVCSILKAC 294
Query: 128 VCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWT 187
+ G+QVH L+ K ++ + SL++ Y K + D VF + NTV WT
Sbjct: 295 SEEKALRFGRQVHSLVVKRMIKTDVFVGTSLMDMYAKCGEISDCRKVFDGMSNRNTVTWT 354
Query: 188 AKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGN--CGRQMHANI 245
+ I + REG + + F+ M R + N+ T S+L+ACG V G G+++HA I
Sbjct: 355 SIIAAHAREGFGEEAISLFRIMKRRHLIANNLTVVSILRACGSV---GALLLGKELHAQI 411
Query: 246 VKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEA 305
+K +E + Y+ LV +Y KC RDA V + + +++ SW AM+ G G EA
Sbjct: 412 IKNSIEKNVYIGSTLVWLYCKCGESRDAFNVLQQL-PSRDVVSWTAMISGCSSLGHESEA 470
Query: 306 TKFLYLMKASGIQIQESLINDLRIACSS 333
FL M G++ + AC++
Sbjct: 471 LDFLKEMIQEGVEPNPFTYSSALKACAN 498
Score = 81.3 bits (199), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 89/201 (44%), Gaps = 11/201 (5%)
Query: 34 NHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADY 93
N I K V I TL++L + CG+ A + ++P RD SW MI G +
Sbjct: 414 NSIEKNVYIGSTLVWL------YCKCGESRDAFNVLQQLPSRDVVSWTAMISGCSSLGHE 467
Query: 94 QECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNIS 153
E + EM++ + + LKAC + ++ +G+ +H + K + N+
Sbjct: 468 SEALDFLKEMIQEGVEPNPFTYSS-----ALKACANSESLLIGRSIHSIAKKNHALSNVF 522
Query: 154 LTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRER 213
+ +LI+ Y K + +A VF + N V W A I+ R G + M E
Sbjct: 523 VGSALIHMYAKCGFVSEAFRVFDSMPEKNLVSWKAMIMGYARNGFCREALKLMYRMEAEG 582
Query: 214 IKKNSYTFSSVLKACGGVDDD 234
+ + Y F+++L CG ++ D
Sbjct: 583 FEVDDYIFATILSTCGDIELD 603
Score = 64.7 bits (156), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 85/174 (48%), Gaps = 4/174 (2%)
Query: 133 MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192
M L K++H + K + I +LI+ + L A VF + NTV WTA I
Sbjct: 98 MRLIKRIHAMALKCFDDQVIYFGNNLISSCVRLGDLVYARKVFDSMPEKNTVTWTAMIDG 157
Query: 193 NCREGHFHQVFNDFKEMGRERIK-KNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLE 251
+ G + F F++ + I+ N F +L C + GRQ+H N+VK+G+
Sbjct: 158 YLKYGLEDEAFALFEDYVKHGIRFTNERMFVCLLNLCSR-RAEFELGRQVHGNMVKVGV- 215
Query: 252 SDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEA 305
+ V+ LV Y +C L A R F+++ ++K++ SW A++ R G ++A
Sbjct: 216 GNLIVESSLVYFYAQCGELTSALRAFDMM-EEKDVISWTAVISACSRKGHGIKA 268
>sp|Q9LFI1|PP280_ARATH Pentatricopeptide repeat-containing protein At3g53360,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E86 PE=2
SV=1
Length = 768
Score = 145 bits (367), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 97/315 (30%), Positives = 150/315 (47%), Gaps = 9/315 (2%)
Query: 3 NLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQL 62
N I Y LI C+ + A ++ +HI N K + N +L M+ CG L
Sbjct: 60 NSSFKIRLRTYISLICACSSSRSLAQGRKIHDHILNS-NCKYDTILNNHILSMYGKCGSL 118
Query: 63 DTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVC 122
AR++FD MP R+ S+ +I GY E I L+ +M++ LV +
Sbjct: 119 RDAREVFDFMPERNLVSYTSVITGYSQNGQGAEAIRLYLKMLQED-----LVPDQFAFGS 173
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
++KAC + ++ LGKQ+H + KL SS ++ +LI Y +F + DA VF + +
Sbjct: 174 IIKACASSSDVGLGKQLHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASRVFYGIPMKD 233
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERI-KKNSYTFSSVLKACGGVDDDGNCGRQM 241
+ W++ I + G + + KEM + N Y F S LKAC + + G Q+
Sbjct: 234 LISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRP-DYGSQI 292
Query: 242 HANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGL 301
H +K L + C L DMY +C L A RVF+ I ++ + ASWN ++ G NG
Sbjct: 293 HGLCIKSELAGNAIAGCSLCDMYARCGFLNSARRVFDQI-ERPDTASWNVIIAGLANNGY 351
Query: 302 YVEATKFLYLMKASG 316
EA M++SG
Sbjct: 352 ADEAVSVFSQMRSSG 366
Score = 109 bits (272), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 74/281 (26%), Positives = 138/281 (49%), Gaps = 8/281 (2%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+ CG L++AR++FD++ D SW V+I G + E +++F++M R G +
Sbjct: 314 MYARCGFLNSARRVFDQIERPDTASWNVIIAGLANNGYADEAVSVFSQM--RSSG---FI 368
Query: 115 FPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFV 174
A + +L A M + G Q+H + K G ++++ SL+ Y L +
Sbjct: 369 PDAISLRSLLCAQTKPMALSQGMQIHSYIIKWGFLADLTVCNSLLTMYTFCSDLYCCFNL 428
Query: 175 FSQLKRH-NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDD 233
F + + ++V W + + ++ FK M + + T ++L+ C +
Sbjct: 429 FEDFRNNADSVSWNTILTACLQHEQPVEMLRLFKLMLVSECEPDHITMGNLLRGCVEISS 488
Query: 234 DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
G Q+H +K GL +++++ GL+DMY KC L A R+F+ + D +++ SW+ ++
Sbjct: 489 -LKLGSQVHCYSLKTGLAPEQFIKNGLIDMYAKCGSLGQARRIFDSM-DNRDVVSWSTLI 546
Query: 294 VGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
VGY ++G EA MK++GI+ + ACS +
Sbjct: 547 VGYAQSGFGEEALILFKEMKSAGIEPNHVTFVGVLTACSHV 587
Score = 99.0 bits (245), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 83/328 (25%), Positives = 141/328 (42%), Gaps = 8/328 (2%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
+ +IK C D +L + K + L+ N L+ M+V Q+ A ++F +
Sbjct: 171 FGSIIKACASSSDVGLGKQLHAQVIK-LESSSHLIAQNALIAMYVRFNQMSDASRVFYGI 229
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN 132
P++D SW+ +I G+ + E ++ EM+ H +I LKAC +
Sbjct: 230 PMKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHP----NEYIFGSSLKACSSLLR 285
Query: 133 MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192
+ G Q+HGL K + N SL + Y + L A VF Q++R +T W I
Sbjct: 286 PDYGSQIHGLCIKSELAGNAIAGCSLCDMYARCGFLNSARRVFDQIERPDTASWNVIIAG 345
Query: 193 NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDG-NCGRQMHANIVKIGLE 251
G+ + + F +M ++ + S+L C + G Q+H+ I+K G
Sbjct: 346 LANNGYADEAVSVFSQMRSSGFIPDAISLRSLL--CAQTKPMALSQGMQIHSYIIKWGFL 403
Query: 252 SDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYL 311
+D V L+ MY C L +FE + + SWN +L +++ VE + L
Sbjct: 404 ADLTVCNSLLTMYTFCSDLYCCFNLFEDFRNNADSVSWNTILTACLQHEQPVEMLRLFKL 463
Query: 312 MKASGIQIQESLINDLRIACSSISASKI 339
M S + + +L C IS+ K+
Sbjct: 464 MLVSECEPDHITMGNLLRGCVEISSLKL 491
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 105/215 (48%), Gaps = 3/215 (1%)
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
+ ++ AC + ++ G+++H + + L +++ YGK L DA VF +
Sbjct: 71 ISLICACSSSRSLAQGRKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFMPE 130
Query: 181 HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQ 240
N V +T+ I + G + + +M +E + + + F S++KAC D G G+Q
Sbjct: 131 RNLVSYTSVITGYSQNGQGAEAIRLYLKMLQEDLVPDQFAFGSIIKACASSSDVG-LGKQ 189
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
+HA ++K+ S Q L+ MY + + DA RVF I K++ SW++++ G+ + G
Sbjct: 190 LHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASRVFYGI-PMKDLISWSSIIAGFSQLG 248
Query: 301 LYVEATKFLYLMKASGI-QIQESLINDLRIACSSI 334
EA L M + G+ E + ACSS+
Sbjct: 249 FEFEALSHLKEMLSFGVFHPNEYIFGSSLKACSSL 283
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 111/251 (44%), Gaps = 18/251 (7%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLR-DFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
N LL M+ C L LF++ D SW ++ + E + LF M+ +
Sbjct: 410 NSLLTMYTFCSDLYCCFNLFEDFRNNADSVSWNTILTACLQHEQPVEMLRLFKLMLVSE- 468
Query: 109 GHMLLVFPAWIIVC-VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
P I + +L+ CV +++LG QVH K G + + LI+ Y K
Sbjct: 469 -----CEPDHITMGNLLRGCVEISSLKLGSQVHCYSLKTGLAPEQFIKNGLIDMYAKCGS 523
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
L A +F + + V W+ IV + G + FKEM I+ N TF VL A
Sbjct: 524 LGQARRIFDSMDNRDVVSWSTLIVGYAQSGFGEEALILFKEMKSAGIEPNHVTFVGVLTA 583
Query: 228 C---GGVDDDGNCGRQMHANI-VKIGL-ESDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282
C G V++ G +++A + + G+ + E+ C +VD+ + L +AER + +
Sbjct: 584 CSHVGLVEE----GLKLYATMQTEHGISPTKEHCSC-VVDLLARAGRLNEAERFIDEMKL 638
Query: 283 KKNIASWNAML 293
+ ++ W +L
Sbjct: 639 EPDVVVWKTLL 649
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 74/164 (45%), Gaps = 7/164 (4%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
+ + P N L+ M+ CG L AR++FD M RD SW+ +IVGY +E +
Sbjct: 501 KTGLAPEQFIKNGLIDMYAKCGSLGQARRIFDSMDNRDVVSWSTLIVGYAQSGFGEEALI 560
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLL-FKLGSSRNISLTGS 157
LF EM + F V VL AC +E G +++ + + G S
Sbjct: 561 LFKEMKSAGIEPNHVTF-----VGVLTACSHVGLVEEGLKLYATMQTEHGISPTKEHCSC 615
Query: 158 LINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCR-EGHFH 200
+++ + L +A+ ++K VV +++ C+ +G+ H
Sbjct: 616 VVDLLARAGRLNEAERFIDEMKLEPDVVVWKTLLSACKTQGNVH 659
Score = 55.5 bits (132), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 59/107 (55%), Gaps = 8/107 (7%)
Query: 220 TFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFEL 279
T+ S++ AC GR++H +I+ + D + ++ MYGKC LRDA VF+
Sbjct: 69 TYISLICACSSSRSLAQ-GRKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDF 127
Query: 280 IVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLIND 326
+ ++ N+ S+ +++ GY +NG EA + LYL +QE L+ D
Sbjct: 128 MPER-NLVSYTSVITGYSQNGQGAEAIR-LYLK-----MLQEDLVPD 167
>sp|O23169|PP353_ARATH Pentatricopeptide repeat-containing protein At4g37170
OS=Arabidopsis thaliana GN=PCMP-H5 PE=3 SV=1
Length = 691
Score = 145 bits (367), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 98/353 (27%), Positives = 170/353 (48%), Gaps = 32/353 (9%)
Query: 7 PITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTAR 66
P +T Y LI+ C+ + ++ HIR P ++ NRLL M+ CG L AR
Sbjct: 84 PAST--YCNLIQVCSQTRALEEGKKVHEHIRTS-GFVPGIVIWNRLLRMYAKCGSLVDAR 140
Query: 67 QLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR----------------KKGH 110
++FDEMP RD SW VM+ GY +V +E LF EM ++ +
Sbjct: 141 KVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDEMTEKDSYSWTAMVTGYVKKDQPEE 200
Query: 111 MLLVFPAWIIVCVLKACVCTMNMEL-----------GKQVHGLLFKLGSSRNISLTGSLI 159
L+++ V + + T+++ + GK++HG + + G + L SL+
Sbjct: 201 ALVLYSLMQRVPNSRPNIFTVSIAVAAAAAVKCIRRGKEIHGHIVRAGLDSDEVLWSSLM 260
Query: 160 NFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSY 219
+ YGK C+++A +F ++ + V WT+ I + + + F+ F E+ + N Y
Sbjct: 261 DMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSRWREGFSLFSELVGSCERPNEY 320
Query: 220 TFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFEL 279
TF+ VL AC + + G+Q+H + ++G + + LVDMY KC + A+ V +
Sbjct: 321 TFAGVLNACADLTTE-ELGKQVHGYMTRVGFDPYSFASSSLVDMYTKCGNIESAKHVVDG 379
Query: 280 IVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
K ++ SW +++ G +NG EA K+ L+ SG + ++ AC+
Sbjct: 380 -CPKPDLVSWTSLIGGCAQNGQPDEALKYFDLLLKSGTKPDHVTFVNVLSACT 431
Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/279 (26%), Positives = 119/279 (42%), Gaps = 34/279 (12%)
Query: 31 ELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDV 90
E+ HI R + + + L+ M+ CG +D AR +FD++ +D SW MI Y
Sbjct: 239 EIHGHI-VRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFKS 297
Query: 91 ADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSR 150
+ ++E +LF+E++ + F VL AC ELGKQVHG + ++G
Sbjct: 298 SRWREGFSLFSELVGSCERPNEYTFAG-----VLNACADLTTEELGKQVHGYMTRVGFDP 352
Query: 151 NISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMG 210
+ SL++ Y K +E A V + + V WT+ I + G + F +
Sbjct: 353 YSFASSSLVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEALKYFDLLL 412
Query: 211 RERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLE--------------SDEYV 256
+ K + TF +VL AC HA +V+ GLE SD Y
Sbjct: 413 KSGTKPDHVTFVNVLSAC------------THAGLVEKGLEFFYSITEKHRLSHTSDHYT 460
Query: 257 QCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
C LVD+ + + V + K + W ++L G
Sbjct: 461 -C-LVDLLARSGRFEQLKSVISEMPMKPSKFLWASVLGG 497
Score = 45.1 bits (105), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 3/101 (2%)
Query: 209 MGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCR 268
+GR + K + T+ ++++ C G+++H +I G + L+ MY KC
Sbjct: 77 LGRAK-KPPASTYCNLIQVCSQTRALEE-GKKVHEHIRTSGFVPGIVIWNRLLRMYAKCG 134
Query: 269 LLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFL 309
L DA +VF+ + + +++ SWN M+ GY GL EA K
Sbjct: 135 SLVDARKVFDEMPN-RDLCSWNVMVNGYAEVGLLEEARKLF 174
>sp|Q9CAA8|PP108_ARATH Putative pentatricopeptide repeat-containing protein At1g68930
OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1
Length = 743
Score = 144 bits (362), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 104/363 (28%), Positives = 161/363 (44%), Gaps = 42/363 (11%)
Query: 5 CLPIT-TDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLD 63
LP T +Y ++ K S A + + I + P L N LLL + G +
Sbjct: 35 ALPYPETFLYNNIVHAYALMKSSTYARRVFDRIPQ-----PNLFSWNNLLLAYSKAGLIS 89
Query: 64 TARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCV 123
F+++P RD +W V+I GY + + MM+ ++ V ++ +
Sbjct: 90 EMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRV----TLMTM 145
Query: 124 LKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNT 183
LK ++ LGKQ+HG + KLG + + L+ Y C+ DA VF L NT
Sbjct: 146 LKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNT 205
Query: 184 VV------------------------------WTAKIVNNCREGHFHQVFNDFKEMGRER 213
V+ W A I + G + F+EM +
Sbjct: 206 VMYNSLMGGLLACGMIEDALQLFRGMEKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQG 265
Query: 214 IKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDA 273
+K + Y F SVL ACGG+ N G+Q+HA I++ + YV L+DMY KC+ L A
Sbjct: 266 LKMDQYPFGSVLPACGGLGAI-NEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYA 324
Query: 274 ERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSS 333
+ VF+ + +KN+ SW AM+VGY + G EA K M+ SGI + AC++
Sbjct: 325 KTVFDRM-KQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACAN 383
Query: 334 ISA 336
+S+
Sbjct: 384 VSS 386
Score = 119 bits (298), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 86/283 (30%), Positives = 131/283 (46%), Gaps = 8/283 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ ++CG ++ A QLF M +D SWA MI G +E I F EM + +G
Sbjct: 209 NSLMGGLLACGMIEDALQLFRGME-KDSVSWAAMIKGLAQNGLAKEAIECFREM--KVQG 265
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ +P VL AC + GKQ+H + + +I + +LI+ Y K +CL
Sbjct: 266 LKMDQYP---FGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLH 322
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A VF ++K+ N V WTA +V + G + F +M R I + YT + AC
Sbjct: 323 YAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACA 382
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
V G Q H + GL V LV +YGKC + D+ R+F + + ++ SW
Sbjct: 383 NVSSLEE-GSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEM-NVRDAVSW 440
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
AM+ Y + G VE + M G++ + + ACS
Sbjct: 441 TAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACS 483
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/258 (22%), Positives = 117/258 (45%), Gaps = 11/258 (4%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R N + + + L+ M+ C L A+ +FD M ++ SW M+VGY +E +
Sbjct: 298 RTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVK 357
Query: 99 LFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGS 157
+F +M + + P + + + AC ++E G Q HG G ++++ S
Sbjct: 358 IFLDMQRSG------IDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNS 411
Query: 158 LINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKN 217
L+ YGK ++D+ +F+++ + V WTA + + G + F +M + +K +
Sbjct: 412 LVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPD 471
Query: 218 SYTFSSVLKAC--GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAER 275
T + V+ AC G+ + G ++ + I + S + C ++D++ + L +A R
Sbjct: 472 GVTLTGVISACSRAGLVEKGQRYFKLMTSEYGI-VPSIGHYSC-MIDLFSRSGRLEEAMR 529
Query: 276 VFELIVDKKNIASWNAML 293
+ + W +L
Sbjct: 530 FINGMPFPPDAIGWTTLL 547
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 239 RQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIR 298
+ +H NI++ + ++ +V Y + A RVF+ I + N+ SWN +L+ Y +
Sbjct: 26 KMIHGNIIRALPYPETFLYNNIVHAYALMKSSTYARRVFDRI-PQPNLFSWNNLLLAYSK 84
Query: 299 NGLYVE 304
GL E
Sbjct: 85 AGLISE 90
>sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protein At3g24000,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2
SV=1
Length = 633
Score = 143 bits (360), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 91/329 (27%), Positives = 161/329 (48%), Gaps = 12/329 (3%)
Query: 6 LPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTA 65
+P Y L+K+CT K + HI + + + ++ N LL M+ CG L+ A
Sbjct: 56 IPADRRFYNTLLKKCTVFKLLIQGRIVHAHILQSI-FRHDIVMGNTLLNMYAKCGSLEEA 114
Query: 66 RQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLK 125
R++F++MP RDF +W +I GY + + F +M++ G+ F + V+K
Sbjct: 115 RKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRF--GYSPNEF---TLSSVIK 169
Query: 126 ACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVV 185
A G Q+HG K G N+ + +L++ Y ++ ++DA VF L+ N V
Sbjct: 170 AAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVS 229
Query: 186 WTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDG--NCGRQMHA 243
W A I + R + F+ M R+ + + ++++S+ AC G G+ +HA
Sbjct: 230 WNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSST---GFLEQGKWVHA 286
Query: 244 NIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYV 303
++K G + + L+DMY K + DA ++F+ + K+++ SWN++L Y ++G
Sbjct: 287 YMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLA-KRDVVSWNSLLTAYAQHGFGK 345
Query: 304 EATKFLYLMKASGIQIQESLINDLRIACS 332
EA + M+ GI+ E + ACS
Sbjct: 346 EAVWWFEEMRRVGIRPNEISFLSVLTACS 374
Score = 92.4 bits (228), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 101/211 (47%), Gaps = 2/211 (0%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
+LK C + G+ VH + + +I + +L+N Y K LE+A VF ++ + +
Sbjct: 66 LLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRD 125
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
V WT I + F +M R N +T SSV+KA + G CG Q+H
Sbjct: 126 FVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAA-ERRGCCGHQLH 184
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
VK G +S+ +V L+D+Y + L+ DA+ VF+ + + +N SWNA++ G+ R
Sbjct: 185 GFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDAL-ESRNDVSWNALIAGHARRSGT 243
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIACSS 333
+A + M G + L ACSS
Sbjct: 244 EKALELFQGMLRDGFRPSHFSYASLFGACSS 274
Score = 85.1 bits (209), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 111/246 (45%), Gaps = 14/246 (5%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR--KKG 109
LL ++ G +D A+ +FD + R+ SW +I G+ + ++ + LF M++ +
Sbjct: 202 LLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPS 261
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
H + AC T +E GK VH + K G +L++ Y K +
Sbjct: 262 HF-------SYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIH 314
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
DA +F +L + + V W + + + G + F+EM R I+ N +F SVL AC
Sbjct: 315 DARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACS 374
Query: 230 --GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
G+ D+G + + K G+ + + +VD+ G+ L A R E + + A
Sbjct: 375 HSGLLDEG---WHYYELMKKDGIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAA 431
Query: 288 SWNAML 293
W A+L
Sbjct: 432 IWKALL 437
>sp|Q9LYU9|PP378_ARATH Pentatricopeptide repeat-containing protein At5g13270,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H90 PE=2
SV=1
Length = 752
Score = 140 bits (354), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 91/325 (28%), Positives = 157/325 (48%), Gaps = 9/325 (2%)
Query: 9 TTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQL 68
+ MYT L+K + ++ H+ R + ++ M+V CG L A+++
Sbjct: 183 PSSMYTTLLKSLVNPRALDFGRQIHAHV-IRAGLCSNTSIETGIVNMYVKCGWLVGAKRV 241
Query: 69 FDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACV 128
FD+M ++ + ++VGY ++ + LF +++ + + +++ VLKAC
Sbjct: 242 FDQMAVKKPVACTGLMVGYTQAGRARDALKLFVDLVTEG-----VEWDSFVFSVVLKACA 296
Query: 129 CTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTA 188
+ LGKQ+H + KLG +S+ L++FY K E A F +++ N V W+A
Sbjct: 297 SLEELNLGKQIHACVAKLGLESEVSVGTPLVDFYIKCSSFESACRAFQEIREPNDVSWSA 356
Query: 189 KIVNNCREGHFHQVFNDFKEMGRERIK-KNSYTFSSVLKACGGVDDDGNCGRQMHANIVK 247
I C+ F + FK + + NS+T++S+ +AC V D N G Q+HA+ +K
Sbjct: 357 IISGYCQMSQFEEAVKTFKSLRSKNASILNSFTYTSIFQAC-SVLADCNIGGQVHADAIK 415
Query: 248 IGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATK 307
L +Y + L+ MY KC L DA VFE + D +I +W A + G+ G EA +
Sbjct: 416 RSLIGSQYGESALITMYSKCGCLDDANEVFESM-DNPDIVAWTAFISGHAYYGNASEALR 474
Query: 308 FLYLMKASGIQIQESLINDLRIACS 332
M + G++ + ACS
Sbjct: 475 LFEKMVSCGMKPNSVTFIAVLTACS 499
Score = 135 bits (341), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 99/338 (29%), Positives = 164/338 (48%), Gaps = 13/338 (3%)
Query: 1 MDNLCLPITTDMYTCLIKEC-TFQKDSAGAFELLNHIRKRVNIK-PTLLFLNRLLLMHVS 58
MD + +++ Y CL + C + S G L H R R+ I+ P++L N +L M+
Sbjct: 74 MDKAGVSVSSYSYQCLFEACRELRSLSHGR---LLHDRMRMGIENPSVLLQNCVLQMYCE 130
Query: 59 CGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAW 118
C L+ A +LFDEM + S MI Y + + + LF+ M+ P+
Sbjct: 131 CRSLEDADKLFDEMSELNAVSRTTMISAYAEQGILDKAVGLFSGMLASGDKP-----PSS 185
Query: 119 IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL 178
+ +LK+ V ++ G+Q+H + + G N S+ ++N Y K L A VF Q+
Sbjct: 186 MYTTLLKSLVNPRALDFGRQIHAHVIRAGLCSNTSIETGIVNMYVKCGWLVGAKRVFDQM 245
Query: 179 KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCG 238
V T +V + G F ++ E ++ +S+ FS VLKAC + ++ N G
Sbjct: 246 AVKKPVACTGLMVGYTQAGRARDALKLFVDLVTEGVEWDSFVFSVVLKACASL-EELNLG 304
Query: 239 RQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIR 298
+Q+HA + K+GLES+ V LVD Y KC A R F+ I + ++ SW+A++ GY +
Sbjct: 305 KQIHACVAKLGLESEVSVGTPLVDFYIKCSSFESACRAFQEIREPNDV-SWSAIISGYCQ 363
Query: 299 NGLYVEATKFLYLMKASGIQIQESLI-NDLRIACSSIS 335
+ EA K +++ I S + ACS ++
Sbjct: 364 MSQFEEAVKTFKSLRSKNASILNSFTYTSIFQACSVLA 401
Score = 85.1 bits (209), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 115/250 (46%), Gaps = 16/250 (6%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ ++ C ++A + F E+ + SW+ +I GY ++ ++E + F + +
Sbjct: 326 LVDFYIKCSSFESACRAFQEIREPNDVSWSAIISGYCQMSQFEEAVKTFKSLRSKNAS-- 383
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFK---LGSSRNISLTGSLINFYGKFRCL 168
+ ++ + +AC + +G QVH K +GS S +LI Y K CL
Sbjct: 384 --ILNSFTYTSIFQACSVLADCNIGGQVHADAIKRSLIGSQYGES---ALITMYSKCGCL 438
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+DA+ VF + + V WTA I + G+ + F++M +K NS TF +VL AC
Sbjct: 439 DDANEVFESMDNPDIVAWTAFISGHAYYGNASEALRLFEKMVSCGMKPNSVTFIAVLTAC 498
Query: 229 ---GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
G V+ +C M + D Y C ++D+Y + LL +A + + + + +
Sbjct: 499 SHAGLVEQGKHCLDTM-LRKYNVAPTIDHY-DC-MIDIYARSGLLDEALKFMKNMPFEPD 555
Query: 286 IASWNAMLVG 295
SW L G
Sbjct: 556 AMSWKCFLSG 565
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 71/139 (51%), Gaps = 4/139 (2%)
Query: 190 IVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIG 249
+V+ + ++ F +EM + + +SY++ + +AC + + GR +H + +++G
Sbjct: 55 LVSLSKHRKLNEAFEFLQEMDKAGVSVSSYSYQCLFEACRELRSLSH-GRLLH-DRMRMG 112
Query: 250 LESDEY-VQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKF 308
+E+ +Q ++ MY +CR L DA+++F+ + + N S M+ Y G+ +A
Sbjct: 113 IENPSVLLQNCVLQMYCECRSLEDADKLFDEM-SELNAVSRTTMISAYAEQGILDKAVGL 171
Query: 309 LYLMKASGIQIQESLINDL 327
M ASG + S+ L
Sbjct: 172 FSGMLASGDKPPSSMYTTL 190
>sp|Q9LIC3|PP227_ARATH Putative pentatricopeptide repeat-containing protein At3g13770,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H85 PE=3
SV=1
Length = 628
Score = 138 bits (348), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 87/270 (32%), Positives = 136/270 (50%), Gaps = 7/270 (2%)
Query: 44 PTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEM 103
P RLL+ + C L+ AR++ DEMP ++ SW MI Y E +T+FAEM
Sbjct: 85 PATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAEM 144
Query: 104 MKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYG 163
M+ F VL +C+ + LGKQ+HGL+ K +I + SL++ Y
Sbjct: 145 MRSDGKPNEFTF-----ATVLTSCIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYA 199
Query: 164 KFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSS 223
K +++A +F L + V TA I + G + F + E + N T++S
Sbjct: 200 KAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYAS 259
Query: 224 VLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
+L A G+ + G+Q H ++++ L +Q L+DMY KC L A R+F+ + ++
Sbjct: 260 LLTALSGLALLDH-GKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYARRLFDNMPER 318
Query: 284 KNIASWNAMLVGYIRNGLYVEATKFLYLMK 313
I SWNAMLVGY ++GL E + LM+
Sbjct: 319 TAI-SWNAMLVGYSKHGLGREVLELFRLMR 347
Score = 107 bits (267), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 106/214 (49%), Gaps = 2/214 (0%)
Query: 122 CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH 181
+L AC+ + G++VH + K L L+ FYGK CLEDA V ++
Sbjct: 57 ALLNACLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEK 116
Query: 182 NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQM 241
N V WTA I + GH + F EM R K N +TF++VL +C G G+Q+
Sbjct: 117 NVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLG-LGKQI 175
Query: 242 HANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGL 301
H IVK +S +V L+DMY K +++A +FE + + +++ S A++ GY + GL
Sbjct: 176 HGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPE-RDVVSCTAIIAGYAQLGL 234
Query: 302 YVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
EA + + + + G+ L A S ++
Sbjct: 235 DEEALEMFHRLHSEGMSPNYVTYASLLTALSGLA 268
Score = 68.9 bits (167), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 70/260 (26%), Positives = 114/260 (43%), Gaps = 18/260 (6%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL M+ GQ+ AR++F+ +P RD S +I GY + +E + +F + H
Sbjct: 194 LLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRL------HS 247
Query: 112 LLVFPAWIIVCVLKACVCTMNM-ELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
+ P ++ L + + + + GKQ H + + L SLI+ Y K L
Sbjct: 248 EGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSY 307
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRE-RIKKNSYTFSSVLKAC- 228
A +F + + W A +V + G +V F+ M E R+K ++ T +VL C
Sbjct: 308 ARRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCS 367
Query: 229 -GGVDDDG-NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELI--VDKK 284
G ++D G N M A ++ Y C +VDM G+ + +A FE I + K
Sbjct: 368 HGRMEDTGLNIFDGMVAGEYGTKPGTEHY-GC-IVDMLGRAGRIDEA---FEFIKRMPSK 422
Query: 285 NIASWNAMLVGYIRNGLYVE 304
A L+G R L V+
Sbjct: 423 PTAGVLGSLLGACRVHLSVD 442
Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 84/200 (42%), Gaps = 16/200 (8%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ CG L AR+LFD MP R SW M+VGY +E + LF M K+
Sbjct: 293 NSLIDMYSKCGNLSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKR- 351
Query: 110 HMLLVFP-AWIIVCVLKACVCTMNMELGKQV-HGLLF-KLGSSRNISLTGSLINFYGKFR 166
V P A ++ VL C + G + G++ + G+ G +++ G+
Sbjct: 352 ----VKPDAVTLLAVLSGCSHGRMEDTGLNIFDGMVAGEYGTKPGTEHYGCIVDMLGRAG 407
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIK-----KNSYTF 221
+++A ++ T ++ CR H + + +GR I+ +Y
Sbjct: 408 RIDEAFEFIKRMPSKPTAGVLGSLLGACR---VHLSVDIGESVGRRLIEIEPENAGNYVI 464
Query: 222 SSVLKACGGVDDDGNCGRQM 241
S L A G D N R M
Sbjct: 465 LSNLYASAGRWADVNNVRAM 484
>sp|O64705|PP184_ARATH Pentatricopeptide repeat-containing protein At2g34400
OS=Arabidopsis thaliana GN=PCMP-E23 PE=3 SV=2
Length = 621
Score = 138 bits (347), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 91/260 (35%), Positives = 139/260 (53%), Gaps = 15/260 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+ L++M+ CGQ+ AR+LFDE+ RD SW MI GY + ++ + LF +M +
Sbjct: 171 HSLIMMYAKCGQVGYARKLFDEITERDTVSWNSMISGYSEAGYAKDAMDLFRKMEEEG-- 228
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLT---GS-LINFYGKF 165
+V +L AC ++ G+ LL ++ ++ I L+ GS LI+ YGK
Sbjct: 229 ---FEPDERTLVSMLGACSHLGDLRTGR----LLEEMAITKKIGLSTFLGSKLISMYGKC 281
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
L+ A VF+Q+ + + V WTA I + G + F F EM + + ++ T S+VL
Sbjct: 282 GDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVL 341
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
ACG V G+Q+ + ++ L+ + YV GLVDMYGKC + +A RVFE + KN
Sbjct: 342 SACGSVGAL-ELGKQIETHASELSLQHNIYVATGLVDMYGKCGRVEEALRVFEAM-PVKN 399
Query: 286 IASWNAMLVGYIRNGLYVEA 305
A+WNAM+ Y G EA
Sbjct: 400 EATWNAMITAYAHQGHAKEA 419
Score = 103 bits (256), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 81/290 (27%), Positives = 133/290 (45%), Gaps = 12/290 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDV-ADYQECITLFAEMMKRKK 108
N L+ V G + + LF + S+ MI G + D++ ++L+ R+
Sbjct: 69 NFLIPKAVELGDFNYSSFLFSVTEEPNHYSFNYMIRGLTNTWNDHEAALSLY-----RRM 123
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
L + V AC + +G+ VH LFK+G R++ + SLI Y K +
Sbjct: 124 KFSGLKPDKFTYNFVFIACAKLEEIGVGRSVHSSLFKVGLERDVHINHSLIMMYAKCGQV 183
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
A +F ++ +TV W + I G+ + F++M E + + T S+L AC
Sbjct: 184 GYARKLFDEITERDTVSWNSMISGYSEAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGAC 243
Query: 229 GGVDD--DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
+ D G +M A KIGL + ++ L+ MYGKC L A RVF ++ K +
Sbjct: 244 SHLGDLRTGRLLEEM-AITKKIGLST--FLGSKLISMYGKCGDLDSARRVFNQMIKKDRV 300
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
A W AM+ Y +NG EA K + M+ +G+ ++ + AC S+ A
Sbjct: 301 A-WTAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGA 349
Score = 88.6 bits (218), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 70/239 (29%), Positives = 103/239 (43%), Gaps = 14/239 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
++L+ M+ CG LD+AR++F++M +D +W MI Y E LF EM K
Sbjct: 272 SKLISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEMEKTG-- 329
Query: 110 HMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
V P A + VL AC +ELGKQ+ +L NI + L++ YGK +
Sbjct: 330 ----VSPDAGTLSTVLSACGSVGALELGKQIETHASELSLQHNIYVATGLVDMYGKCGRV 385
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
E+A VF + N W A I +GH + F M + + TF VL AC
Sbjct: 386 EEALRVFEAMPVKNEATWNAMITAYAHQGHAKEALLLFDRMS---VPPSDITFIGVLSAC 442
Query: 229 --GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
G+ G C R H GL ++D+ + +L +A E K +
Sbjct: 443 VHAGLVHQG-C-RYFHEMSSMFGLVPKIEHYTNIIDLLSRAGMLDEAWEFMERFPGKPD 499
>sp|Q9SX45|PPR75_ARATH Pentatricopeptide repeat-containing protein At1g50270
OS=Arabidopsis thaliana GN=PCMP-E42 PE=2 SV=1
Length = 596
Score = 135 bits (340), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 95/315 (30%), Positives = 150/315 (47%), Gaps = 9/315 (2%)
Query: 19 ECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFN 78
+ F+ + F+ HI K + N L+ + S G D A +LFD +D
Sbjct: 112 KAVFKLRDSNPFQFHAHIVK-FGLDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVV 170
Query: 79 SWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQ 138
+W MI G+V E + F EM +K G + +V VLKA ++ G+
Sbjct: 171 TWTAMIDGFVRNGSASEAMVYFVEM--KKTG---VAANEMTVVSVLKAAGKVEDVRFGRS 225
Query: 139 VHGLLFKLGSSR-NISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREG 197
VHGL + G + ++ + SL++ YGK C +DA VF ++ N V WTA I +
Sbjct: 226 VHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSR 285
Query: 198 HFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQ 257
F + F+EM + + N T SSVL AC V + GR++H ++K +E +
Sbjct: 286 CFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGA-LHRGRRVHCYMIKNSIEINTTAG 344
Query: 258 CGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGI 317
L+D+Y KC L +A VFE + +KN+ +W AM+ G+ +G +A Y M +S +
Sbjct: 345 TTLIDLYVKCGCLEEAILVFERL-HEKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHV 403
Query: 318 QIQESLINDLRIACS 332
E + AC+
Sbjct: 404 SPNEVTFMAVLSACA 418
Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 72/247 (29%), Positives = 116/247 (46%), Gaps = 11/247 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+ L+ M+ C D A+++FDEMP R+ +W +I GYV + + + +F EM+K
Sbjct: 244 SSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSD-- 301
Query: 110 HMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
V P + VL AC + G++VH + K N + +LI+ Y K CL
Sbjct: 302 ----VAPNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCL 357
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
E+A VF +L N WTA I G+ F+ F M + N TF +VL AC
Sbjct: 358 EEAILVFERLHEKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSAC 417
Query: 229 --GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
GG+ ++G R + + +E +VD++G+ LL +A+ + E + +
Sbjct: 418 AHGGLVEEGR--RLFLSMKGRFNMEPKADHYACMVDLFGRKGLLEEAKALIERMPMEPTN 475
Query: 287 ASWNAML 293
W A+
Sbjct: 476 VVWGALF 482
Score = 95.9 bits (237), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 77/292 (26%), Positives = 128/292 (43%), Gaps = 8/292 (2%)
Query: 47 LFLNRLLLMHVSCG-QLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
LFL+RLL + Q AR+L ++ W +I + ++ A
Sbjct: 36 LFLSRLLRRCCTAATQFRYARRLLCQLQTLSIQLWDSLIGHFSGGITLNRRLSFLAYRHM 95
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
R+ G V P+ L V + Q H + K G + + SLI+ Y
Sbjct: 96 RRNG----VIPSRHTFPPLLKAVFKLRDSNPFQFHAHIVKFGLDSDPFVRNSLISGYSSS 151
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
+ A +F + + V WTA I R G + F EM + + N T SVL
Sbjct: 152 GLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEAMVYFVEMKKTGVAANEMTVVSVL 211
Query: 226 KACGGVDDDGNCGRQMHANIVKIG-LESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
KA G V +D GR +H ++ G ++ D ++ LVDMYGKC DA++VF+ + +
Sbjct: 212 KAAGKV-EDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEM-PSR 269
Query: 285 NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
N+ +W A++ GY+++ + + M S + E ++ + AC+ + A
Sbjct: 270 NVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGA 321
>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070
OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
Length = 741
Score = 135 bits (340), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 92/287 (32%), Positives = 144/287 (50%), Gaps = 17/287 (5%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ + S G ++ A++LFDE+P++D SW MI GY + +Y+E + LF +MMK
Sbjct: 206 LIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTN---- 261
Query: 112 LLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
V P +V V+ AC + ++ELG+QVH + G N+ + +LI+ Y K LE
Sbjct: 262 --VRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELET 319
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC-- 228
A +F +L + + W I + + F+EM R N T S+L AC
Sbjct: 320 ACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAH 379
Query: 229 -GGVDDDGNCGRQMHANIVK--IGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
G +D GR +H I K G+ + ++ L+DMY KC + A +VF I+ K+
Sbjct: 380 LGAID----IGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSIL-HKS 434
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
++SWNAM+ G+ +G + M+ GIQ + L ACS
Sbjct: 435 LSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACS 481
Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/294 (24%), Positives = 125/294 (42%), Gaps = 44/294 (14%)
Query: 80 WAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQV 139
W M G+ +D + L+ M+ + L+ ++ VLK+C + + G+Q+
Sbjct: 102 WNTMFRGHALSSDPVSALKLYVCMIS-----LGLLPNSYTFPFVLKSCAKSKAFKEGQQI 156
Query: 140 HGLLFKLGSSRNISLTGSLINFYGKFRCLEDA---------------------------- 171
HG + KLG ++ + SLI+ Y + LEDA
Sbjct: 157 HGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYI 216
Query: 172 ---DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+F ++ + V W A I G++ + FK+M + ++ + T +V+ AC
Sbjct: 217 ENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSAC 276
Query: 229 ---GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
G ++ GRQ+H I G S+ + L+D+Y KC L A +FE + K+
Sbjct: 277 AQSGSIE----LGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERL-PYKD 331
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKI 339
+ SWN ++ GY LY EA M SG + + + AC+ + A I
Sbjct: 332 VISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDI 385
Score = 82.4 bits (202), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 91/185 (49%), Gaps = 7/185 (3%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L +N L+ ++ CG+L+TA LF+ +P +D SW +I GY + Y+E + LF EM++
Sbjct: 301 LKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLR 360
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKL--GSSRNISLTGSLINFYG 163
+ + ++ +L AC +++G+ +H + K G + SL SLI+ Y
Sbjct: 361 SGETPNDVT-----MLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYA 415
Query: 164 KFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSS 223
K +E A VF+ + + W A I G F+ F M + I+ + TF
Sbjct: 416 KCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVG 475
Query: 224 VLKAC 228
+L AC
Sbjct: 476 LLSAC 480
Score = 69.3 bits (168), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 91/227 (40%), Gaps = 34/227 (14%)
Query: 139 VHGLLFKLGSSRNISLTGSLINF---YGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCR 195
+H + K+G LI F F L A VF ++ N ++W +
Sbjct: 52 IHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQEPNLLIWNTMFRGHAL 111
Query: 196 EGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEY 255
+ M + NSYTF VLK+C G+Q+H +++K+G + D Y
Sbjct: 112 SSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKE-GQQIHGHVLKLGCDLDLY 170
Query: 256 VQCGLVDMYGKCRLLRDAERVFE------------LI------------------VDKKN 285
V L+ MY + L DA +VF+ LI + K+
Sbjct: 171 VHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKD 230
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+ SWNAM+ GY G Y EA + M + ++ ES + + AC+
Sbjct: 231 VVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACA 277
Score = 31.6 bits (70), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 239 RQMHANIVKIGLESDEYVQCGLVD---MYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
R +HA ++KIGL + Y L++ + L A VF+ I + N+ WN M G
Sbjct: 50 RIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTI-QEPNLLIWNTMFRG 108
Query: 296 YIRNGLYVEATKFLYLMKASGI 317
+ + V A K M + G+
Sbjct: 109 HALSSDPVSALKLYVCMISLGL 130
>sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750
OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1
Length = 781
Score = 134 bits (336), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 86/283 (30%), Positives = 142/283 (50%), Gaps = 15/283 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N ++ + G++D ARQLFDE P++D +W M+ GY+ +E LF +M +R +
Sbjct: 254 NTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMPERNE- 312
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+W +L V ME+ K+ LF + RN+S ++I Y + +
Sbjct: 313 ------VSW--NAMLAGYVQGERMEMAKE----LFDVMPCRNVSTWNTMITGYAQCGKIS 360
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
+A +F ++ + + V W A I + GH + F +M RE + N +FSS L C
Sbjct: 361 EAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCA 420
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
V G+Q+H +VK G E+ +V L+ MY KC + +A +F+ + K+I SW
Sbjct: 421 DVVAL-ELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAG-KDIVSW 478
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
N M+ GY R+G A +F MK G++ ++ + + ACS
Sbjct: 479 NTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACS 521
Score = 105 bits (262), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 74/248 (29%), Positives = 116/248 (46%), Gaps = 13/248 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N ++ + CG++ A+ LFD+MP RD SWA MI GY E + LF +M +R+ G
Sbjct: 347 NTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQM-EREGG 405
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ L C + +ELGKQ+HG L K G + +L+ Y K +E
Sbjct: 406 RLNRS----SFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIE 461
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC- 228
+A+ +F ++ + V W I R G F+ M RE +K + T +VL AC
Sbjct: 462 EANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACS 521
Query: 229 --GGVDDDGNCGRQMHANIVK-IGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
G VD GRQ + + G+ + +VD+ G+ LL DA + + + + +
Sbjct: 522 HTGLVDK----GRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPD 577
Query: 286 IASWNAML 293
A W +L
Sbjct: 578 AAIWGTLL 585
Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 70/313 (22%), Positives = 117/313 (37%), Gaps = 72/313 (23%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N ++ ++ G+ + AR+LFDEMP RD SW VMI GYV
Sbjct: 99 NGMISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYV--------------------- 137
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
N LGK LF++ R++ ++++ Y + C++
Sbjct: 138 ---------------------RNRNLGKARE--LFEIMPERDVCSWNTMLSGYAQNGCVD 174
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYT--FSSVLKA 227
DA VF ++ N V W A + + + FK RE S+ +K
Sbjct: 175 DARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFK--SRENWALVSWNCLLGGFVKK 232
Query: 228 CGGVD-----DDGNCGRQMHANIVKIGLE-----------------SDEYVQCGLVDMYG 265
V+ D N + N + G D + +V Y
Sbjct: 233 KKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYI 292
Query: 266 KCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLIN 325
+ R++ +A +F+ + + +N SWNAML GY++ A + +M + ++I
Sbjct: 293 QNRMVEEARELFDKMPE-RNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMIT 351
Query: 326 DLRIACSSISASK 338
C IS +K
Sbjct: 352 GY-AQCGKISEAK 363
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/287 (19%), Positives = 128/287 (44%), Gaps = 23/287 (8%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N +L + G +D AR +FD MP ++ SW ++ YV + +E LF K ++
Sbjct: 161 NTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLF----KSREN 216
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
L+ + C+L V + +Q F + R++ ++I Y + ++
Sbjct: 217 WALVSWN-----CLLGGFVKKKKIVEARQ----FFDSMNVRDVVSWNTIITGYAQSGKID 267
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
+A +F + + WTA + + +++ + +E+ + ++N +++++L G
Sbjct: 268 EARQLFDESPVQDVFTWTAMVSGYIQ----NRMVEEARELFDKMPERNEVSWNAML--AG 321
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
V + +M + + + ++ Y +C + +A+ +F+ + K++ SW
Sbjct: 322 YVQGE---RMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKM-PKRDPVSW 377
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
AM+ GY ++G EA + M+ G ++ S + C+ + A
Sbjct: 378 AAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVA 424
>sp|P93005|PP181_ARATH Pentatricopeptide repeat-containing protein At2g33680
OS=Arabidopsis thaliana GN=PCMP-E19 PE=3 SV=1
Length = 727
Score = 133 bits (334), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 88/284 (30%), Positives = 136/284 (47%), Gaps = 9/284 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ C L+ A ++FD R+ +W+ M+ GY + E + LF+ M
Sbjct: 260 NALVTMYSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQNGESLEAVKLFSRMFSAG-- 317
Query: 110 HMLLVFPA-WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+ P+ + IV VL AC +E GKQ+H L KLG R++ T +L++ Y K CL
Sbjct: 318 ----IKPSEYTIVGVLNACSDICYLEEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCL 373
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
DA F L+ + +WT+ I + + ++ M I N T +SVLKAC
Sbjct: 374 ADARKGFDCLQERDVALWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKAC 433
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
+ G+Q+H + +K G + + L MY KC L D VF + K++ S
Sbjct: 434 SSLATL-ELGKQVHGHTIKHGFGLEVPIGSALSTMYSKCGSLEDGNLVFRRTPN-KDVVS 491
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
WNAM+ G NG EA + M A G++ + ++ ACS
Sbjct: 492 WNAMISGLSHNGQGDEALELFEEMLAEGMEPDDVTFVNIISACS 535
Score = 124 bits (310), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 77/288 (26%), Positives = 140/288 (48%), Gaps = 13/288 (4%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ G ++ ++F MP R+ +W+ M+ GY +E I +F ++ K+
Sbjct: 159 LVGMYCKAGLVEDGLKVFAYMPERNTYTWSTMVSGYATRGRVEEAIKVFNLFLREKEEGS 218
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
++ VL + T+ + LG+Q+H + K G ++L+ +L+ Y K L +A
Sbjct: 219 ---DSDYVFTAVLSSLAATIYVGLGRQIHCITIKNGLLGFVALSNALVTMYSKCESLNEA 275
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
+F N++ W+A + + G + F M IK + YT VL AC +
Sbjct: 276 CKMFDSSGDRNSITWSAMVTGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVLNACSDI 335
Query: 232 DDDGNC----GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
C G+Q+H+ ++K+G E + LVDMY K L DA + F+ + ++++A
Sbjct: 336 -----CYLEEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDCL-QERDVA 389
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
W +++ GY++N EA MK +GI + + + ACSS++
Sbjct: 390 LWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLA 437
Score = 120 bits (301), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 86/302 (28%), Positives = 141/302 (46%), Gaps = 14/302 (4%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVD---VADYQE 95
R + N L+ + CG+L A +F+ + +D SW +I GY ++
Sbjct: 42 RTGASTCIQHANVLVNFYAKCGKLAKAHSIFNAIICKDVVSWNSLITGYSQNGGISSSYT 101
Query: 96 CITLFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISL 154
+ LF EM + + P A+ + + KA + +G+Q H L+ K+ S +I +
Sbjct: 102 VMQLFREMRAQD------ILPNAYTLAGIFKAESSLQSSTVGRQAHALVVKMSSFGDIYV 155
Query: 155 TGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERI 214
SL+ Y K +ED VF+ + NT W+ + G + F RE+
Sbjct: 156 DTSLVGMYCKAGLVEDGLKVFAYMPERNTYTWSTMVSGYATRGRVEEAIKVFNLFLREKE 215
Query: 215 K--KNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRD 272
+ + Y F++VL + G GRQ+H +K GL + LV MY KC L +
Sbjct: 216 EGSDSDYVFTAVLSSLAATIYVG-LGRQIHCITIKNGLLGFVALSNALVTMYSKCESLNE 274
Query: 273 AERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
A ++F+ D+ +I +W+AM+ GY +NG +EA K M ++GI+ E I + ACS
Sbjct: 275 ACKMFDSSGDRNSI-TWSAMVTGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVLNACS 333
Query: 333 SI 334
I
Sbjct: 334 DI 335
Score = 90.5 bits (223), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 88/183 (48%), Gaps = 5/183 (2%)
Query: 132 NMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIV 191
N+ G+ VHG + + G+S I L+NFY K L A +F+ + + V W + I
Sbjct: 29 NLVAGRAVHGQIIRTGASTCIQHANVLVNFYAKCGKLAKAHSIFNAIICKDVVSWNSLIT 88
Query: 192 NNCREGHF---HQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKI 248
+ G + V F+EM + I N+YT + + KA + GRQ HA +VK+
Sbjct: 89 GYSQNGGISSSYTVMQLFREMRAQDILPNAYTLAGIFKAESSLQSS-TVGRQAHALVVKM 147
Query: 249 GLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKF 308
D YV LV MY K L+ D +VF + ++N +W+ M+ GY G EA K
Sbjct: 148 SSFGDIYVDTSLVGMYCKAGLVEDGLKVFAYM-PERNTYTWSTMVSGYATRGRVEEAIKV 206
Query: 309 LYL 311
L
Sbjct: 207 FNL 209
>sp|Q9M1V3|PP296_ARATH Pentatricopeptide repeat-containing protein At3g63370
OS=Arabidopsis thaliana GN=PCMP-H83 PE=2 SV=2
Length = 960
Score = 133 bits (334), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 86/287 (29%), Positives = 141/287 (49%), Gaps = 9/287 (3%)
Query: 51 RLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGH 110
+L+ M+ CG LD A ++FDEMP R +W MI YV + + L+ M
Sbjct: 121 KLVFMYGKCGSLDDAEKVFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPL 180
Query: 111 MLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
L FPA +LKAC ++ G ++H LL KLG + +L++ Y K L
Sbjct: 181 GLSSFPA-----LLKACAKLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSA 235
Query: 171 ADFVFSQLK-RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A +F + + + V+W + + + G + F+EM NSYT S L AC
Sbjct: 236 ARRLFDGFQEKGDAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACD 295
Query: 230 GVDDDGNCGRQMHANIVKIGLESDE-YVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
G G+++HA+++K S E YV L+ MY +C + AER+ + + ++ +
Sbjct: 296 GF-SYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQM-NNADVVT 353
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
WN+++ GY++N +Y EA +F M A+G + E + + A +S
Sbjct: 354 WNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLS 400
Score = 102 bits (254), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 83/334 (24%), Positives = 151/334 (45%), Gaps = 12/334 (3%)
Query: 6 LPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTA 65
+P+ + L+K C +D EL + + ++ T +N L+ M+ L A
Sbjct: 178 VPLGLSSFPALLKACAKLRDIRSGSEL-HSLLVKLGYHSTGFIVNALVSMYAKNDDLSAA 236
Query: 66 RQLFDEMPLR-DFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCV 123
R+LFD + D W ++ Y E + LF EM HM P ++ IV
Sbjct: 237 RRLFDGFQEKGDAVLWNSILSSYSTSGKSLETLELFREM------HMTGPAPNSYTIVSA 290
Query: 124 LKACVCTMNMELGKQVHGLLFKLGS-SRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
L AC +LGK++H + K + S + + +LI Y + + A+ + Q+ +
Sbjct: 291 LTACDGFSYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNAD 350
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
V W + I + + + F +M K + + +S++ A G + + G ++H
Sbjct: 351 VVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNL-LAGMELH 409
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
A ++K G +S+ V L+DMY KC L R F L + K++ SW ++ GY +N +
Sbjct: 410 AYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAF-LRMHDKDLISWTTVIAGYAQNDCH 468
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
VEA + + ++I E ++ + A S + +
Sbjct: 469 VEALELFRDVAKKRMEIDEMILGSILRASSVLKS 502
Score = 95.5 bits (236), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 73/288 (25%), Positives = 132/288 (45%), Gaps = 8/288 (2%)
Query: 31 ELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDV 90
E+ + K L N L+ M+ CG++ A ++ +M D +W +I GYV
Sbjct: 305 EIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQN 364
Query: 91 ADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSR 150
Y+E + F++M+ GH + ++ A N+ G ++H + K G
Sbjct: 365 LMYKEALEFFSDMI--AAGHK---SDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDS 419
Query: 151 NISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMG 210
N+ + +LI+ Y K F ++ + + WT I + + F+++
Sbjct: 420 NLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVA 479
Query: 211 RERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLL 270
++R++ + S+L+A V +++H +I++ GL D +Q LVD+YGKCR +
Sbjct: 480 KKRMEIDEMILGSILRA-SSVLKSMLIVKEIHCHILRKGL-LDTVIQNELVDVYGKCRNM 537
Query: 271 RDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
A RVFE I K++ SW +M+ NG EA + M +G+
Sbjct: 538 GYATRVFESI-KGKDVVSWTSMISSSALNGNESEAVELFRRMVETGLS 584
Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 97/225 (43%), Gaps = 2/225 (0%)
Query: 116 PAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNIS-LTGSLINFYGKFRCLEDADFV 174
P VL+ C + G+Q+H +FK S + L G L+ YGK L+DA+ V
Sbjct: 79 PVEAFAYVLELCGKRRAVSQGRQLHSRIFKTFPSFELDFLAGKLVFMYGKCGSLDDAEKV 138
Query: 175 FSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDD 234
F ++ W I G + M E + +F ++LKAC + D
Sbjct: 139 FDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDI 198
Query: 235 GNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLV 294
G ++H+ +VK+G S ++ LV MY K L A R+F+ +K + WN++L
Sbjct: 199 -RSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILS 257
Query: 295 GYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKI 339
Y +G +E + M +G I AC S +K+
Sbjct: 258 SYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKL 302
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/248 (21%), Positives = 110/248 (44%), Gaps = 9/248 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ ++ C + A ++F+ + +D SW MI + E + LF M++
Sbjct: 525 NELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRMVETG-- 582
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
L + ++C+L A + G+++H L + G S+ ++++ Y L+
Sbjct: 583 ---LSADSVALLCILSAAASLSALNKGREIHCYLLRKGFCLEGSIAVAVVDMYACCGDLQ 639
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC- 228
A VF +++R + +T+ I G F +M E + + +F ++L AC
Sbjct: 640 SAKAVFDRIERKGLLQYTSMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLALLYACS 699
Query: 229 -GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
G+ D+G ++ + ++ + YV C LVDM G+ + +A +++ +
Sbjct: 700 HAGLLDEGRGFLKIMEHEYELEPWPEHYV-C-LVDMLGRANCVVEAFEFVKMMKTEPTAE 757
Query: 288 SWNAMLVG 295
W A+L
Sbjct: 758 VWCALLAA 765
>sp|Q5G1T1|PP272_ARATH Pentatricopeptide repeat-containing protein At3g49170,
chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2
SV=1
Length = 850
Score = 132 bits (332), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 89/290 (30%), Positives = 144/290 (49%), Gaps = 16/290 (5%)
Query: 52 LLLMHVSC---GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADY-QECITLFAEMMKRK 107
L+ M+ C G +D R++FD M SW +I GY+ + E I LF+EM+
Sbjct: 308 LVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMIT-- 365
Query: 108 KGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166
+GH V P + KAC + +GKQV G FK G + N S+ S+I+ + K
Sbjct: 366 QGH---VEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSD 422
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
+EDA F L N V + + CR +F Q F E+ + +++TF+S+L
Sbjct: 423 RMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLL- 481
Query: 227 ACGGVDDDGNC--GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
GV + G+ G Q+H+ +VK+GL ++ V L+ MY KC + A RVF + + +
Sbjct: 482 --SGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFM-ENR 538
Query: 285 NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
N+ SW +M+ G+ ++G + + M G++ E + ACS +
Sbjct: 539 NVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHV 588
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 90/346 (26%), Positives = 162/346 (46%), Gaps = 26/346 (7%)
Query: 7 PITTDMYTCLIKECTFQKDSAGAFELLNHIRKRV---NIKPTLLFLNRLLLMHVSCGQLD 63
P+ + ++ L+K C +D F L + R+ +I+P + N L+ ++ G
Sbjct: 59 PMDSVTFSSLLKSCIRARD----FRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSA 114
Query: 64 TARQLFDEMPL---RDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWII 120
A +F+ M RD SW+ M+ Y + + I +F E ++ + LV +
Sbjct: 115 KAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLE-----LGLVPNDYCY 169
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLGS-SRNISLTGSLINFYGKFR-CLEDADFVFSQL 178
V++AC + + +G+ G L K G ++ + SLI+ + K E+A VF ++
Sbjct: 170 TAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKM 229
Query: 179 KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCG 238
N V WT I + G + F +M + + +T SSV AC + ++ + G
Sbjct: 230 SELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAEL-ENLSLG 288
Query: 239 RQMHANIVKIGLESDEYVQCGLVDMYGKCRL---LRDAERVFELIVDKKNIASWNAMLVG 295
+Q+H+ ++ GL D V+C LVDMY KC + D +VF+ + D ++ SW A++ G
Sbjct: 289 KQLHSWAIRSGLVDD--VECSLVDMYAKCSADGSVDDCRKVFDRMED-HSVMSWTALITG 345
Query: 296 YIRN-GLYVEATKFLYLMKASG-IQIQESLINDLRIACSSISASKI 339
Y++N L EA M G ++ + AC ++S ++
Sbjct: 346 YMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRV 391
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/282 (21%), Positives = 123/282 (43%), Gaps = 8/282 (2%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
++ K C D ++L KR + N ++ M V +++ A++ F+ +
Sbjct: 376 FSSAFKACGNLSDPRVGKQVLGQAFKR-GLASNSSVANSVISMFVKSDRMEDAQRAFESL 434
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN 132
++ S+ + G ++++ L +E+ +R+ G A+ +L +
Sbjct: 435 SEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELG-----VSAFTFASLLSGVANVGS 489
Query: 133 MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192
+ G+Q+H + KLG S N + +LI+ Y K ++ A VF+ ++ N + WT+ I
Sbjct: 490 IRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITG 549
Query: 193 NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLES 252
+ G +V F +M E +K N T+ ++L AC V R ++ ++
Sbjct: 550 FAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKP 609
Query: 253 D-EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
E+ C +VD+ + LL DA + + ++ W L
Sbjct: 610 KMEHYAC-MVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFL 650
>sp|Q9ZQ74|PP146_ARATH Pentatricopeptide repeat-containing protein At2g03380,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E47 PE=3
SV=1
Length = 689
Score = 131 bits (329), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 88/288 (30%), Positives = 146/288 (50%), Gaps = 8/288 (2%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
L LL M+ CG++ +A ++F+++ LR+ W MI GYV +E + LF M +
Sbjct: 179 LTGLLDMYAKCGEIKSAHKVFNDITLRNVVCWTSMIAGYVKNDLCEEGLVLFNRMRENN- 237
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
++ + ++ AC + GK HG L K G + L SL++ Y K +
Sbjct: 238 ----VLGNEYTYGTLIMACTKLSALHQGKWFHGCLVKSGIELSSCLVTSLLDMYVKCGDI 293
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+A VF++ + V+WTA IV G ++ + F++M IK N T +SVL C
Sbjct: 294 SNARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEALSLFQKMKGVEIKPNCVTIASVLSGC 353
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
G +++ GR +H +K+G+ D V LV MY KC RDA+ VFE+ +K+I +
Sbjct: 354 GLIENL-ELGRSVHGLSIKVGIW-DTNVANALVHMYAKCYQNRDAKYVFEM-ESEKDIVA 410
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
WN+++ G+ +NG EA + M + + + L AC+S+ +
Sbjct: 411 WNSIISGFSQNGSIHEALFLFHRMNSESVTPNGVTVASLFSACASLGS 458
Score = 129 bits (325), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 88/296 (29%), Positives = 139/296 (46%), Gaps = 12/296 (4%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
+ I+ + + LL M+V CG + AR++F+E D W MIVGY E ++
Sbjct: 270 KSGIELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEALS 329
Query: 99 LFAEMMKRKKGHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGS 157
LF +M KG + + P + I VL C N+ELG+ VHGL K+G + ++ +
Sbjct: 330 LFQKM----KG--VEIKPNCVTIASVLSGCGLIENLELGRSVHGLSIKVGI-WDTNVANA 382
Query: 158 LINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKN 217
L++ Y K DA +VF + V W + I + G H+ F M E + N
Sbjct: 383 LVHMYAKCYQNRDAKYVFEMESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNSESVTPN 442
Query: 218 SYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCG--LVDMYGKCRLLRDAER 275
T +S+ AC + G +HA VK+G + V G L+D Y KC + A
Sbjct: 443 GVTVASLFSACASLGSLA-VGSSLHAYSVKLGFLASSSVHVGTALLDFYAKCGDPQSARL 501
Query: 276 VFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
+F+ I ++KN +W+AM+ GY + G + + + M + ES + AC
Sbjct: 502 IFDTI-EEKNTITWSAMIGGYGKQGDTIGSLELFEEMLKKQQKPNESTFTSILSAC 556
Score = 108 bits (270), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 80/266 (30%), Positives = 127/266 (47%), Gaps = 10/266 (3%)
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI 119
G AR +FD++P DF W VM+ Y + E + L+ +MK + +VF
Sbjct: 90 GYTKDARLVFDQIPEPDFYLWKVMLRCYCLNKESVEVVKLYDLLMKHGFRYDDIVFSK-- 147
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
LKAC +++ GK++H L K+ S N+ LTG L++ Y K ++ A VF+ +
Sbjct: 148 ---ALKACTELQDLDNGKKIHCQLVKVPSFDNVVLTG-LLDMYAKCGEIKSAHKVFNDIT 203
Query: 180 RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGR 239
N V WT+ I + + F M + N YT+ +++ AC + G+
Sbjct: 204 LRNVVCWTSMIAGYVKNDLCEEGLVLFNRMRENNVLGNEYTYGTLIMACTKLSALHQ-GK 262
Query: 240 QMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRN 299
H +VK G+E + L+DMY KC + +A RVF ++ W AM+VGY N
Sbjct: 263 WFHGCLVKSGIELSSCLVTSLLDMYVKCGDISNARRVFNE-HSHVDLVMWTAMIVGYTHN 321
Query: 300 GLYVEATKFLYLMKASGIQIQESLIN 325
G EA MK G++I+ + +
Sbjct: 322 GSVNEALSLFQKMK--GVEIKPNCVT 345
Score = 95.5 bits (236), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 105/215 (48%), Gaps = 4/215 (1%)
Query: 122 CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH 181
C L CT N++ +Q HG+L G +IS+ L++ YG F +DA VF Q+
Sbjct: 47 CFLLLSKCT-NIDSLRQSHGVLTGNGLMGDISIATKLVSLYGFFGYTKDARLVFDQIPEP 105
Query: 182 NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQM 241
+ +W + C +V + + + + + FS LKAC + D N G+++
Sbjct: 106 DFYLWKVMLRCYCLNKESVEVVKLYDLLMKHGFRYDDIVFSKALKACTELQDLDN-GKKI 164
Query: 242 HANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGL 301
H +VK+ D V GL+DMY KC ++ A +VF I +N+ W +M+ GY++N L
Sbjct: 165 HCQLVKVP-SFDNVVLTGLLDMYAKCGEIKSAHKVFNDIT-LRNVVCWTSMIAGYVKNDL 222
Query: 302 YVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
E M+ + + E L +AC+ +SA
Sbjct: 223 CEEGLVLFNRMRENNVLGNEYTYGTLIMACTKLSA 257
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 116/251 (46%), Gaps = 13/251 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ C Q A+ +F+ +D +W +I G+ E + LF M
Sbjct: 381 NALVHMYAKCYQNRDAKYVFEMESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNSES-- 438
Query: 110 HMLLVFPAWIIVCVL-KACVCTMNMELGKQVHGLLFKLG--SSRNISLTGSLINFYGKFR 166
V P + V L AC ++ +G +H KLG +S ++ + +L++FY K
Sbjct: 439 ----VTPNGVTVASLFSACASLGSLAVGSSLHAYSVKLGFLASSSVHVGTALLDFYAKCG 494
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
+ A +F ++ NT+ W+A I ++G F+EM +++ K N TF+S+L
Sbjct: 495 DPQSARLIFDTIEEKNTITWSAMIGGYGKQGDTIGSLELFEEMLKKQQKPNESTFTSILS 554
Query: 227 ACGGVDDDGNCGRQMHANIVKIG--LESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
ACG N G++ +++ K S ++ C +VDM + L A + E + +
Sbjct: 555 ACGHTGMV-NEGKKYFSSMYKDYNFTPSTKHYTC-MVDMLARAGELEQALDIIEKMPIQP 612
Query: 285 NIASWNAMLVG 295
++ + A L G
Sbjct: 613 DVRCFGAFLHG 623
>sp|Q9LRV2|PP256_ARATH Pentatricopeptide repeat-containing protein At3g26540
OS=Arabidopsis thaliana GN=PCMP-A5 PE=2 SV=1
Length = 700
Score = 130 bits (328), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 100/359 (27%), Positives = 158/359 (44%), Gaps = 37/359 (10%)
Query: 7 PITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTAR 66
P++ +Y L + C+ + A ++ +H+ + P L LNR + + CG +D AR
Sbjct: 58 PVSYWLYERLFRSCSSKALVVQARKVQSHLVTFSPLPPIFL-LNRAIEAYGKCGCVDDAR 116
Query: 67 QLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKA 126
+LF+EMP RD SW +I E +F M + F VLK+
Sbjct: 117 ELFEEMPERDGGSWNAVITACAQNGVSDEVFRMFRRMNRDGVRATETSFAG-----VLKS 171
Query: 127 CVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVW 186
C +++ L +Q+H + K G S N+ L S+++ YGK R + DA VF ++ + V W
Sbjct: 172 CGLILDLRLLRQLHCAVVKYGYSGNVDLETSIVDVYGKCRVMSDARRVFDEIVNPSDVSW 231
Query: 187 TAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIV 246
+ G + F +M ++ ++T SSV+ AC G+ +HA V
Sbjct: 232 NVIVRRYLEMGFNDEAVVMFFKMLELNVRPLNHTVSSVMLACSR-SLALEVGKVIHAIAV 290
Query: 247 KIGLESDEYVQCGLVDMYGKCRLLRDAERVFEL--------------------------- 279
K+ + +D V + DMY KC L A RVF+
Sbjct: 291 KLSVVADTVVSTSVFDMYVKCDRLESARRVFDQTRSKDLKSWTSAMSGYAMSGLTREARE 350
Query: 280 ---IVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
++ ++NI SWNAML GY+ + EA FL LM+ I + + CS IS
Sbjct: 351 LFDLMPERNIVSWNAMLGGYVHAHEWDEALDFLTLMRQEIENIDNVTLVWILNVCSGIS 409
Score = 123 bits (308), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 76/260 (29%), Positives = 133/260 (51%), Gaps = 9/260 (3%)
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI 119
G AR+LFD MP R+ SW M+ GYV ++ E + F +M+++ ++ V WI
Sbjct: 343 GLTREARELFDLMPERNIVSWNAMLGGYVHAHEWDEALD-FLTLMRQEIENIDNVTLVWI 401
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
L C ++++GKQ HG +++ G N+ + +L++ YGK L+ A+ F Q+
Sbjct: 402 ----LNVCSGISDVQMGKQAHGFIYRHGYDTNVIVANALLDMYGKCGTLQSANIWFRQMS 457
Query: 180 R-HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCG 238
+ V W A + R G Q + F+ M E K + YT +++L C + N G
Sbjct: 458 ELRDEVSWNALLTGVARVGRSEQALSFFEGMQVE-AKPSKYTLATLLAGCANI-PALNLG 515
Query: 239 RQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIR 298
+ +H +++ G + D ++ +VDMY KCR A VF+ +++ WN+++ G R
Sbjct: 516 KAIHGFLIRDGYKIDVVIRGAMVDMYSKCRCFDYAIEVFKEAA-TRDLILWNSIIRGCCR 574
Query: 299 NGLYVEATKFLYLMKASGIQ 318
NG E + L++ G++
Sbjct: 575 NGRSKEVFELFMLLENEGVK 594
Score = 95.5 bits (236), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 79/312 (25%), Positives = 136/312 (43%), Gaps = 44/312 (14%)
Query: 59 CGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK---RKKGHMLLVF 115
C + AR++FDE+ SW V++ Y+++ E + +F +M++ R H
Sbjct: 210 CRVMSDARRVFDEIVNPSDVSWNVIVRRYLEMGFNDEAVVMFFKMLELNVRPLNH----- 264
Query: 116 PAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVF 175
+ V+ AC ++ +E+GK +H + KL + ++ S+ + Y K LE A VF
Sbjct: 265 ---TVSSVMLACSRSLALEVGKVIHAIAVKLSVVADTVVSTSVFDMYVKCDRLESARRVF 321
Query: 176 SQLKRHNTVVWTAKIVNNCREG----------------------------HFHQVFN--D 205
Q + + WT+ + G H H+ D
Sbjct: 322 DQTRSKDLKSWTSAMSGYAMSGLTREARELFDLMPERNIVSWNAMLGGYVHAHEWDEALD 381
Query: 206 FKEMGRERIKK-NSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMY 264
F + R+ I+ ++ T +L C G+ D G+Q H I + G +++ V L+DMY
Sbjct: 382 FLTLMRQEIENIDNVTLVWILNVCSGISDV-QMGKQAHGFIYRHGYDTNVIVANALLDMY 440
Query: 265 GKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLI 324
GKC L+ A F + + ++ SWNA+L G R G +A F M+ + +L
Sbjct: 441 GKCGTLQSANIWFRQMSELRDEVSWNALLTGVARVGRSEQALSFFEGMQVEAKPSKYTLA 500
Query: 325 NDLRIACSSISA 336
L C++I A
Sbjct: 501 T-LLAGCANIPA 511
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 88/184 (47%), Gaps = 7/184 (3%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMP-LRDFNSWAVMIVGYVDVADYQECITLFAEMM 104
++ N LL M+ CG L +A F +M LRD SW ++ G V ++ ++ F M
Sbjct: 430 VIVANALLDMYGKCGTLQSANIWFRQMSELRDEVSWNALLTGVARVGRSEQALSFFEGMQ 489
Query: 105 KRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
K + + +L C + LGK +HG L + G ++ + G++++ Y K
Sbjct: 490 VEAKP------SKYTLATLLAGCANIPALNLGKAIHGFLIRDGYKIDVVIRGAMVDMYSK 543
Query: 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
RC + A VF + + ++W + I CR G +VF F + E +K + TF +
Sbjct: 544 CRCFDYAIEVFKEAATRDLILWNSIIRGCCRNGRSKEVFELFMLLENEGVKPDHVTFLGI 603
Query: 225 LKAC 228
L+AC
Sbjct: 604 LQAC 607
>sp|Q9LR69|PPR8_ARATH Pentatricopeptide repeat-containing protein At1g03540
OS=Arabidopsis thaliana GN=PCMP-E4 PE=2 SV=1
Length = 609
Score = 129 bits (325), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 83/254 (32%), Positives = 129/254 (50%), Gaps = 10/254 (3%)
Query: 65 ARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVL 124
AR++FDEMP D W ++ + Y+E + LF M R KG LV VL
Sbjct: 217 ARRVFDEMPEPDVICWTAVLSAFSKNDLYEEALGLFY-AMHRGKG---LVPDGSTFGTVL 272
Query: 125 KACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTV 184
AC ++ GK++HG L G N+ + SL++ YGK + +A VF+ + + N+V
Sbjct: 273 TACGNLRRLKQGKEIHGKLITNGIGSNVVVESSLLDMYGKCGSVREARQVFNGMSKKNSV 332
Query: 185 VWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHAN 244
W+A + C+ G + F+EM +K+ Y F +VLKAC G+ G+++H
Sbjct: 333 SWSALLGGYCQNGEHEKAIEIFREME----EKDLYCFGTVLKACAGLAAV-RLGKEIHGQ 387
Query: 245 IVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVE 304
V+ G + V+ L+D+YGK + A RV+ + +N+ +WNAML +NG E
Sbjct: 388 YVRRGCFGNVIVESALIDLYGKSGCIDSASRVYSKM-SIRNMITWNAMLSALAQNGRGEE 446
Query: 305 ATKFLYLMKASGIQ 318
A F M GI+
Sbjct: 447 AVSFFNDMVKKGIK 460
Score = 118 bits (296), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 88/342 (25%), Positives = 165/342 (48%), Gaps = 24/342 (7%)
Query: 6 LPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNR-----LLLMHVSCG 60
+P T +Y L++ C F ++ I+ ++ + L +R LL ++ G
Sbjct: 57 IPATPKLYASLLQTCN------KVFSFIHGIQFHAHVVKSGLETDRNVGNSLLSLYFKLG 110
Query: 61 Q-LDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI 119
+ R++FD ++D SW M+ GYV ++ + + +F EM+ L +
Sbjct: 111 PGMRETRRVFDGRFVKDAISWTSMMSGYVTGKEHVKALEVFVEMVS-----FGLDANEFT 165
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
+ +KAC + LG+ HG++ G N ++ +L YG R DA VF ++
Sbjct: 166 LSSAVKACSELGEVRLGRCFHGVVITHGFEWNHFISSTLAYLYGVNREPVDARRVFDEMP 225
Query: 180 RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRER-IKKNSYTFSSVLKACGGVDDDGNCG 238
+ + WTA + + + + F M R + + + TF +VL ACG + G
Sbjct: 226 EPDVICWTAVLSAFSKNDLYEEALGLFYAMHRGKGLVPDGSTFGTVLTACGNLRRLKQ-G 284
Query: 239 RQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIR 298
+++H ++ G+ S+ V+ L+DMYGKC +R+A +VF + KKN SW+A+L GY +
Sbjct: 285 KEIHGKLITNGIGSNVVVESSLLDMYGKCGSVREARQVFNGM-SKKNSVSWSALLGGYCQ 343
Query: 299 NGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKIN 340
NG + +A + M+ + +++ AC+ ++A ++
Sbjct: 344 NGEHEKAIEIFREMEEKDLYCFGTVLK----ACAGLAAVRLG 381
Score = 110 bits (275), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 129/255 (50%), Gaps = 13/255 (5%)
Query: 41 NIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLF 100
I ++ + LL M+ CG + ARQ+F+ M ++ SW+ ++ GY ++++ I +F
Sbjct: 295 GIGSNVVVESSLLDMYGKCGSVREARQVFNGMSKKNSVSWSALLGGYCQNGEHEKAIEIF 354
Query: 101 AEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLIN 160
EM ++ L F VLKAC + LGK++HG + G N+ + +LI+
Sbjct: 355 REMEEKD----LYCFGT-----VLKACAGLAAVRLGKEIHGQYVRRGCFGNVIVESALID 405
Query: 161 FYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYT 220
YGK C++ A V+S++ N + W A + + G + + F +M ++ IK + +
Sbjct: 406 LYGKSGCIDSASRVYSKMSIRNMITWNAMLSALAQNGRGEEAVSFFNDMVKKGIKPDYIS 465
Query: 221 FSSVLKACG--GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE 278
F ++L ACG G+ D+G + A I ++ Y C ++D+ G+ L +AE + E
Sbjct: 466 FIAILTACGHTGMVDEGRNYFVLMAKSYGIKPGTEHY-SC-MIDLLGRAGLFEEAENLLE 523
Query: 279 LIVDKKNIASWNAML 293
+ + + W +L
Sbjct: 524 RAECRNDASLWGVLL 538
>sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290
OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1
Length = 809
Score = 129 bits (325), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 83/282 (29%), Positives = 145/282 (51%), Gaps = 9/282 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ CG L+TARQLFD M R+ SW MI YV + +E + +F +M+
Sbjct: 277 LVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEG---- 332
Query: 112 LLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
V P + ++ L AC ++E G+ +H L +LG RN+S+ SLI+ Y K + ++
Sbjct: 333 --VKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDT 390
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
A +F +L+ V W A I+ + G N F +M +K +++T+ SV+ A
Sbjct: 391 AASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAE 450
Query: 231 VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWN 290
+ + + +H +++ L+ + +V LVDMY KC + A +F+++ ++++ +WN
Sbjct: 451 LSITHH-AKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMM-SERHVTTWN 508
Query: 291 AMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
AM+ GY +G A + M+ I+ + ACS
Sbjct: 509 AMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACS 550
Score = 102 bits (253), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 72/288 (25%), Positives = 132/288 (45%), Gaps = 7/288 (2%)
Query: 47 LFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR 106
F +L+ + G +D A ++F+ + + + M+ G+ V+D + + F M
Sbjct: 70 FFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYD 129
Query: 107 KKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166
++ F +LK C + +GK++HGLL K G S ++ L N Y K R
Sbjct: 130 DVEPVVYNF-----TYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCR 184
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
+ +A VF ++ + V W + + G K M E +K + T SVL
Sbjct: 185 QVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLP 244
Query: 227 ACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
A + + G+++H ++ G +S + LVDMY KC L A ++F+ +++ +N+
Sbjct: 245 AVSALRLI-SVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLE-RNV 302
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
SWN+M+ Y++N EA M G++ + + AC+ +
Sbjct: 303 VSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADL 350
Score = 83.2 bits (204), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/249 (26%), Positives = 107/249 (42%), Gaps = 13/249 (5%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
+N L+ M+ C ++DTA +F ++ R SW MI+G+ + + F++M R
Sbjct: 375 VNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRT- 433
Query: 109 GHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167
V P + V V+ A K +HG++ + +N+ +T +L++ Y K
Sbjct: 434 -----VKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGA 488
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
+ A +F + + W A I G F+EM + IK N TF SV+ A
Sbjct: 489 IMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISA 548
Query: 228 C---GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK 284
C G V+ C M N I L D Y +VD+ G+ L +A + K
Sbjct: 549 CSHSGLVEAGLKCFYMMKENY-SIELSMDHY--GAMVDLLGRAGRLNEAWDFIMQMPVKP 605
Query: 285 NIASWNAML 293
+ + AML
Sbjct: 606 AVNVYGAML 614
Score = 75.1 bits (183), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 89/173 (51%), Gaps = 3/173 (1%)
Query: 129 CTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTA 188
C+ EL +Q+ L+FK G + L++ + ++ +++A VF + V++
Sbjct: 47 CSSLKEL-RQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHT 105
Query: 189 KIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKI 248
+ + + F M + ++ Y F+ +LK CG + + G+++H +VK
Sbjct: 106 MLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGD-EAELRVGKEIHGLLVKS 164
Query: 249 GLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGL 301
G D + GL +MY KCR + +A +VF+ + ++++ SWN ++ GY +NG+
Sbjct: 165 GFSLDLFAMTGLENMYAKCRQVNEARKVFDRM-PERDLVSWNTIVAGYSQNGM 216
>sp|Q9SS83|PP220_ARATH Pentatricopeptide repeat-containing protein At3g09040,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E88 PE=2
SV=1
Length = 1028
Score = 129 bits (324), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 97/326 (29%), Positives = 152/326 (46%), Gaps = 11/326 (3%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM 72
+T L+ C D + + I K+ + L N L+ M+ CG L+ ARQ+F+ M
Sbjct: 431 FTSLLSTCAASHDLEMGSQFHSIIIKK-KLAKNLFVGNALVDMYAKCGALEDARQIFERM 489
Query: 73 PLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN 132
RD +W +I YV + E LF M +V + LKAC
Sbjct: 490 CDRDNVTWNTIIGSYVQDENESEAFDLFKRM-----NLCGIVSDGACLASTLKACTHVHG 544
Query: 133 MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192
+ GKQVH L K G R++ SLI+ Y K ++DA VFS L + V A ++
Sbjct: 545 LYQGKQVHCLSVKCGLDRDLHTGSSLIDMYSKCGIIKDARKVFSSLPEWSVVSMNA-LIA 603
Query: 193 NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLES 252
+ + + F+EM + + TF+++++AC + G Q H I K G S
Sbjct: 604 GYSQNNLEEAVVLFQEMLTRGVNPSEITFATIVEACHK-PESLTLGTQFHGQITKRGFSS 662
Query: 253 D-EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYL 311
+ EY+ L+ MY R + +A +F + K+I W M+ G+ +NG Y EA KF
Sbjct: 663 EGEYLGISLLGMYMNSRGMTEACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALKFYKE 722
Query: 312 MKASGI-QIQESLINDLRIACSSISA 336
M+ G+ Q + + LR+ CS +S+
Sbjct: 723 MRHDGVLPDQATFVTVLRV-CSVLSS 747
Score = 126 bits (316), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 89/292 (30%), Positives = 131/292 (44%), Gaps = 7/292 (2%)
Query: 43 KPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAE 102
+P L ++ ++ G+L AR LF EM D +W VMI G+ I F
Sbjct: 258 RPDHLAFVTVINTYIRLGKLKDARLLFGEMSSPDVVAWNVMISGHGKRGCETVAIEYFFN 317
Query: 103 MMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFY 162
M K + VL A N++LG VH KLG + NI + SL++ Y
Sbjct: 318 MRKSSVKSTRSTLGS-----VLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMY 372
Query: 163 GKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFS 222
K +E A VF L+ N V W A I G H+V F +M + +TF+
Sbjct: 373 SKCEKMEAAAKVFEALEEKNDVFWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFT 432
Query: 223 SVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282
S+L C D G Q H+ I+K L + +V LVDMY KC L DA ++FE + D
Sbjct: 433 SLLSTCAA-SHDLEMGSQFHSIIIKKKLAKNLFVGNALVDMYAKCGALEDARQIFERMCD 491
Query: 283 KKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
+ N+ +WN ++ Y+++ EA M GI + + AC+ +
Sbjct: 492 RDNV-TWNTIIGSYVQDENESEAFDLFKRMNLCGIVSDGACLASTLKACTHV 542
Score = 125 bits (315), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 85/286 (29%), Positives = 142/286 (49%), Gaps = 11/286 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+ L+ M+ CG + AR++F +P S +I GY + +E + LF EM+ R
Sbjct: 568 SSLIDMYSKCGIIKDARKVFSSLPEWSVVSMNALIAGYSQ-NNLEEAVVLFQEMLTRG-- 624
Query: 110 HMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLG-SSRNISLTGSLINFYGKFRC 167
V P+ I +++AC ++ LG Q HG + K G SS L SL+ Y R
Sbjct: 625 ----VNPSEITFATIVEACHKPESLTLGTQFHGQITKRGFSSEGEYLGISLLGMYMNSRG 680
Query: 168 LEDADFVFSQLKRHNTVV-WTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
+ +A +FS+L ++V WT + + + G + + +KEM + + + TF +VL+
Sbjct: 681 MTEACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGVLPDQATFVTVLR 740
Query: 227 ACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
C V GR +H+ I + + DE L+DMY KC ++ + +VF+ + + N+
Sbjct: 741 VCS-VLSSLREGRAIHSLIFHLAHDLDELTSNTLIDMYAKCGDMKGSSQVFDEMRRRSNV 799
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
SWN+++ GY +NG +A K M+ S I E + ACS
Sbjct: 800 VSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLTACS 845
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 90/187 (48%), Gaps = 3/187 (1%)
Query: 130 TMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAK 189
+ + +GK VH LG L ++++ Y K + A+ F L++ + W +
Sbjct: 73 ALALRIGKAVHSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAEKQFDFLEK-DVTAWNSM 131
Query: 190 IVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIG 249
+ G +V F + +I N +TFS VL C + + GRQ+H +++K+G
Sbjct: 132 LSMYSSIGKPGKVLRSFVSLFENQIFPNKFTFSIVLSTCA-RETNVEFGRQIHCSMIKMG 190
Query: 250 LESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFL 309
LE + Y LVDMY KC + DA RVFE IVD N W + GY++ GL EA
Sbjct: 191 LERNSYCGGALVDMYAKCDRISDARRVFEWIVD-PNTVCWTCLFSGYVKAGLPEEAVLVF 249
Query: 310 YLMKASG 316
M+ G
Sbjct: 250 ERMRDEG 256
Score = 74.7 bits (182), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 118/250 (47%), Gaps = 19/250 (7%)
Query: 52 LLLMHVSCGQLDTARQLFDEMP-LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGH 110
LL M+++ + A LF E+ + W M+ G+ Y+E + + EM R G
Sbjct: 671 LLGMYMNSRGMTEACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALKFYKEM--RHDG- 727
Query: 111 MLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
V P V VL+ C ++ G+ +H L+F L + + +LI+ Y K ++
Sbjct: 728 ---VLPDQATFVTVLRVCSVLSSLREGRAIHSLIFHLAHDLDELTSNTLIDMYAKCGDMK 784
Query: 170 DADFVFSQLKRHNTVV-WTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+ VF +++R + VV W + I + G+ F M + I + TF VL AC
Sbjct: 785 GSSQVFDEMRRRSNVVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLTAC 844
Query: 229 ---GGVDDDGNCGRQMHANIV-KIGLESD-EYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
G V D GR++ ++ + G+E+ ++V C +VD+ G+ L++A+ E K
Sbjct: 845 SHAGKVSD----GRKIFEMMIGQYGIEARVDHVAC-MVDLLGRWGYLQEADDFIEAQNLK 899
Query: 284 KNIASWNAML 293
+ W+++L
Sbjct: 900 PDARLWSSLL 909
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/279 (21%), Positives = 114/279 (40%), Gaps = 45/279 (16%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N ++ ++ C Q+ A + FD + +D +W M+ Y + + + F + + +
Sbjct: 99 NAIVDLYAKCAQVSYAEKQFDFLE-KDVTAWNSMLSMYSSIGKPGKVLRSFVSLFENQ-- 155
Query: 110 HMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+FP + VL C N+E G+Q+H + K+G RN G+L++ Y K +
Sbjct: 156 ----IFPNKFTFSIVLSTCARETNVEFGRQIHCSMIKMGLERNSYCGGALVDMYAKCDRI 211
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
DA VF + NTV WT + G + F+ M E + + F +V+
Sbjct: 212 SDARRVFEWIVDPNTVCWTCLFSGYVKAGLPEEAVLVFERMRDEGHRPDHLAFVTVI--- 268
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
+ Y++ G L+DA +F + ++ +
Sbjct: 269 ------------------------NTYIRLG---------KLKDARLLFGEM-SSPDVVA 294
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDL 327
WN M+ G+ + G A ++ + M+ S ++ S + +
Sbjct: 295 WNVMISGHGKRGCETVAIEYFFNMRKSSVKSTRSTLGSV 333
Score = 48.1 bits (113), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 76/150 (50%), Gaps = 11/150 (7%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLR-DFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
N L+ M+ CG + + Q+FDEM R + SW +I GY ++ + +F M ++
Sbjct: 771 NTLIDMYAKCGDMKGSSQVFDEMRRRSNVVSWNSLINGYAKNGYAEDALKIFDSM---RQ 827
Query: 109 GHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLF-KLGSSRNISLTGSLINFYGKFR 166
H++ P I + VL AC + G+++ ++ + G + +++ G++
Sbjct: 828 SHIM---PDEITFLGVLTACSHAGKVSDGRKIFEMMIGQYGIEARVDHVACMVDLLGRWG 884
Query: 167 CLEDA-DFVFSQLKRHNTVVWTAKIVNNCR 195
L++A DF+ +Q + + +W++ ++ CR
Sbjct: 885 YLQEADDFIEAQNLKPDARLWSS-LLGACR 913
>sp|Q9STS9|PP268_ARATH Putative pentatricopeptide repeat-containing protein At3g47840
OS=Arabidopsis thaliana GN=PCMP-E43 PE=3 SV=1
Length = 706
Score = 128 bits (321), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 83/280 (29%), Positives = 139/280 (49%), Gaps = 7/280 (2%)
Query: 57 VSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP 116
++ G L ARQ+FD+MP D SW +I YV + E + LF+ M R H V P
Sbjct: 51 INAGNLRAARQVFDKMPHGDIVSWTSIIKRYVTANNSDEALILFSAM--RVVDHA--VSP 106
Query: 117 -AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVF 175
++ VLKAC + N+ G+ +H K ++ + SL++ Y + ++ + VF
Sbjct: 107 DTSVLSVVLKACGQSSNIAYGESLHAYAVKTSLLSSVYVGSSLLDMYKRVGKIDKSCRVF 166
Query: 176 SQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDG 235
S++ N V WTA I G + + F EM R ++YTF+ LKAC G+
Sbjct: 167 SEMPFRNAVTWTAIITGLVHAGRYKEGLTYFSEMSRSEELSDTYTFAIALKACAGLRQV- 225
Query: 236 NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
G+ +H +++ G + V L MY +C ++D +FE + ++++ SW +++V
Sbjct: 226 KYGKAIHTHVIVRGFVTTLCVANSLATMYTECGEMQDGLCLFENM-SERDVVSWTSLIVA 284
Query: 296 YIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
Y R G V+A + M+ S + E + AC+S+S
Sbjct: 285 YKRIGQEVKAVETFIKMRNSQVPPNEQTFASMFSACASLS 324
Score = 117 bits (294), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/309 (25%), Positives = 145/309 (46%), Gaps = 8/309 (2%)
Query: 10 TDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLF 69
T + + ++K C Q + E L+ + ++ ++ + LL M+ G++D + ++F
Sbjct: 108 TSVLSVVLKACG-QSSNIAYGESLHAYAVKTSLLSSVYVGSSLLDMYKRVGKIDKSCRVF 166
Query: 70 DEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVC 129
EMP R+ +W +I G V Y+E +T F+EM + ++ + + LKAC
Sbjct: 167 SEMPFRNAVTWTAIITGLVHAGRYKEGLTYFSEMSRSEE-----LSDTYTFAIALKACAG 221
Query: 130 TMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAK 189
++ GK +H + G + + SL Y + ++D +F + + V WT+
Sbjct: 222 LRQVKYGKAIHTHVIVRGFVTTLCVANSLATMYTECGEMQDGLCLFENMSERDVVSWTSL 281
Query: 190 IVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIG 249
IV R G + F +M ++ N TF+S+ AC + G Q+H N++ +G
Sbjct: 282 IVAYKRIGQEVKAVETFIKMRNSQVPPNEQTFASMFSACASLSRL-VWGEQLHCNVLSLG 340
Query: 250 LESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFL 309
L V ++ MY C L A +F+ + ++I SW+ ++ GY + G E K+
Sbjct: 341 LNDSLSVSNSMMKMYSTCGNLVSASVLFQGM-RCRDIISWSTIIGGYCQAGFGEEGFKYF 399
Query: 310 YLMKASGIQ 318
M+ SG +
Sbjct: 400 SWMRQSGTK 408
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/299 (26%), Positives = 134/299 (44%), Gaps = 12/299 (4%)
Query: 10 TDMYTCLI--KECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQ 67
+D YT I K C + + H+ R TL N L M+ CG++
Sbjct: 207 SDTYTFAIALKACAGLRQVKYGKAIHTHVIVR-GFVTTLCVANSLATMYTECGEMQDGLC 265
Query: 68 LFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKAC 127
LF+ M RD SW +IV Y + + + F +M + F + + AC
Sbjct: 266 LFENMSERDVVSWTSLIVAYKRIGQEVKAVETFIKMRNSQVPPNEQTFAS-----MFSAC 320
Query: 128 VCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWT 187
+ G+Q+H + LG + ++S++ S++ Y L A +F ++ + + W+
Sbjct: 321 ASLSRLVWGEQLHCNVLSLGLNDSLSVSNSMMKMYSTCGNLVSASVLFQGMRCRDIISWS 380
Query: 188 AKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDD-DGNCGRQMHANIV 246
I C+ G + F F M + K + +S+L G + +G GRQ+HA +
Sbjct: 381 TIIGGYCQAGFGEEGFKYFSWMRQSGTKPTDFALASLLSVSGNMAVIEG--GRQVHALAL 438
Query: 247 KIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEA 305
GLE + V+ L++MY KC +++A +F D+ +I S AM+ GY +G EA
Sbjct: 439 CFGLEQNSTVRSSLINMYSKCGSIKEASMIFGE-TDRDDIVSLTAMINGYAEHGKSKEA 496
Score = 85.9 bits (211), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 71/258 (27%), Positives = 116/258 (44%), Gaps = 9/258 (3%)
Query: 40 VNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITL 99
+ + +L N ++ M+ +CG L +A LF M RD SW+ +I GY +E
Sbjct: 339 LGLNDSLSVSNSMMKMYSTCGNLVSASVLFQGMRCRDIISWSTIIGGYCQAGFGEEGFKY 398
Query: 100 FAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLI 159
F+ M R+ G F + +L +E G+QVH L G +N ++ SLI
Sbjct: 399 FSWM--RQSGTKPTDFA---LASLLSVSGNMAVIEGGRQVHALALCFGLEQNSTVRSSLI 453
Query: 160 NFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSY 219
N Y K +++A +F + R + V TA I G + + F++ + + +S
Sbjct: 454 NMYSKCGSIKEASMIFGETDRDDIVSLTAMINGYAEHGKSKEAIDLFEKSLKVGFRPDSV 513
Query: 220 TFSSVLKAC--GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVF 277
TF SVL AC G D G M + + E+ C +VD+ + L DAE++
Sbjct: 514 TFISVLTACTHSGQLDLGFHYFNMMQETYNM-RPAKEHYGC-MVDLLCRAGRLSDAEKMI 571
Query: 278 ELIVDKKNIASWNAMLVG 295
+ KK+ W +L+
Sbjct: 572 NEMSWKKDDVVWTTLLIA 589
>sp|Q9SVA5|PP357_ARATH Pentatricopeptide repeat-containing protein At4g39530
OS=Arabidopsis thaliana GN=PCMP-E52 PE=1 SV=1
Length = 834
Score = 128 bits (321), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 88/330 (26%), Positives = 156/330 (47%), Gaps = 13/330 (3%)
Query: 8 ITTDMYTC--LIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTA 65
+ DMY C ++ C + G ++ + N+ N L+ M+ C L A
Sbjct: 346 LKPDMYACSSILTSCA-SLHALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDA 404
Query: 66 RQLFDEMPLRDFNSWAVMIVGYVDVA---DYQECITLFAEMMKRKKGHMLLVFPAWIIVC 122
R++FD D + MI GY + + E + +F +M R LL F V
Sbjct: 405 RKVFDIFAAADVVLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTF-----VS 459
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
+L+A ++ L KQ+HGL+FK G + +I +LI+ Y CL+D+ VF ++K +
Sbjct: 460 LLRASASLTSLGLSKQIHGLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKD 519
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
V+W + ++ + N F E+ R + + +TF++++ A G + G++ H
Sbjct: 520 LVIWNSMFAGYVQQSENEEALNLFLELQLSRERPDEFTFANMVTAAGNLASV-QLGQEFH 578
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
++K GLE + Y+ L+DMY KC DA + F+ +++ WN+++ Y +G
Sbjct: 579 CQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDSAA-SRDVVCWNSVISSYANHGEG 637
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIACS 332
+A + L M + GI+ + ACS
Sbjct: 638 KKALQMLEKMMSEGIEPNYITFVGVLSACS 667
Score = 120 bits (301), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 88/337 (26%), Positives = 155/337 (45%), Gaps = 13/337 (3%)
Query: 8 ITTDMY--TCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTA 65
+ D Y + ++ C+ G ++ HI R ++ +N L+ +V CG++ A
Sbjct: 245 VVPDGYILSTVLSACSILPFLEGGKQIHAHIL-RYGLEMDASLMNVLIDSYVKCGRVIAA 303
Query: 66 RQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLK 125
+LF+ MP ++ SW ++ GY A ++E + LF M K L + +L
Sbjct: 304 HKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSK-----FGLKPDMYACSSILT 358
Query: 126 ACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVV 185
+C + G QVH K + +T SLI+ Y K CL DA VF + V+
Sbjct: 359 SCASLHALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVL 418
Query: 186 WTAKIVNNCREG---HFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
+ A I R G H+ N F++M I+ + TF S+L+A + G +Q+H
Sbjct: 419 FNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLG-LSKQIH 477
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
+ K GL D + L+D+Y C L+D+ VF+ + K++ WN+M GY++
Sbjct: 478 GLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEM-KVKDLVIWNSMFAGYVQQSEN 536
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIACSSISASKI 339
EA ++ S + E ++ A ++++ ++
Sbjct: 537 EEALNLFLELQLSRERPDEFTFANMVTAAGNLASVQL 573
Score = 115 bits (288), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 76/249 (30%), Positives = 122/249 (48%), Gaps = 7/249 (2%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ ++ G +D AR +FD +P + +W MI G V + + LF ++M+
Sbjct: 189 LIDFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDN---- 244
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+V +I+ VL AC +E GKQ+H + + G + SL LI+ Y K + A
Sbjct: 245 -VVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAA 303
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
+F+ + N + WT + + + F M + +K + Y SS+L +C +
Sbjct: 304 HKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASL 363
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
G G Q+HA +K L +D YV L+DMY KC L DA +VF+ I ++ +NA
Sbjct: 364 HALG-FGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFD-IFAAADVVLFNA 421
Query: 292 MLVGYIRNG 300
M+ GY R G
Sbjct: 422 MIEGYSRLG 430
Score = 115 bits (287), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 81/290 (27%), Positives = 143/290 (49%), Gaps = 10/290 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ ++ G + AR++F++MP R+ SW+ M+ Y+E + +F E + +K
Sbjct: 83 NILINLYSRAGGMVYARKVFEKMPERNLVSWSTMVSACNHHGIYEESLVVFLEFWRTRKD 142
Query: 110 HMLLVFP-AWIIVCVLKAC--VCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166
P +I+ ++AC + + Q+ L K G R++ + LI+FY K
Sbjct: 143 S-----PNEYILSSFIQACSGLDGRGRWMVFQLQSFLVKSGFDRDVYVGTLLIDFYLKDG 197
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
++ A VF L +TV WT I + G + F ++ + + + Y S+VL
Sbjct: 198 NIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYILSTVLS 257
Query: 227 ACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
AC + G+Q+HA+I++ GLE D + L+D Y KC + A ++F + + KNI
Sbjct: 258 AC-SILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMPN-KNI 315
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
SW +L GY +N L+ EA + M G++ + + +C+S+ A
Sbjct: 316 ISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHA 365
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 88/196 (44%), Gaps = 3/196 (1%)
Query: 139 VHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGH 198
VHG + G + L+ LIN Y + + A VF ++ N V W+ + G
Sbjct: 66 VHGQIIVWGLELDTYLSNILINLYSRAGGMVYARKVFEKMPERNLVSWSTMVSACNHHGI 125
Query: 199 FHQVFNDFKEMGRERI-KKNSYTFSSVLKACGGVDDDGNCGR-QMHANIVKIGLESDEYV 256
+ + F E R R N Y SS ++AC G+D G Q+ + +VK G + D YV
Sbjct: 126 YEESLVVFLEFWRTRKDSPNEYILSSFIQACSGLDGRGRWMVFQLQSFLVKSGFDRDVYV 185
Query: 257 QCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASG 316
L+D Y K + A VF+ + +K + +W M+ G ++ G + + Y +
Sbjct: 186 GTLLIDFYLKDGNIDYARLVFDALPEKSTV-TWTTMISGCVKMGRSYVSLQLFYQLMEDN 244
Query: 317 IQIQESLINDLRIACS 332
+ +++ + ACS
Sbjct: 245 VVPDGYILSTVLSACS 260
>sp|O82363|PP203_ARATH Pentatricopeptide repeat-containing protein At2g46050,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E39 PE=3
SV=1
Length = 590
Score = 127 bits (319), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 147/308 (47%), Gaps = 30/308 (9%)
Query: 42 IKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFA 101
I +L N+LL + + D A +LFDEMPLR+ +W ++I G +
Sbjct: 67 IYNSLFLQNKLLQAYTKIREFDDADKLFDEMPLRNIVTWNILIHGVIQ-----------R 115
Query: 102 EMMKRKKGHMLLVFPAWIIVC-----------VLKACVCTMNMELGKQVHGLLFKLGSSR 150
+ + H+ + + I+ +++ C + NM+ G Q+H L+ K G
Sbjct: 116 DGDTNHRAHLGFCYLSRILFTDVSLDHVSFMGLIRLCTDSTNMKAGIQLHCLMVKQGLES 175
Query: 151 NISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMG 210
+ + SL++FYGK + +A VF + + V+W A + + G + F K MG
Sbjct: 176 SCFPSTSLVHFYGKCGLIVEARRVFEAVLDRDLVLWNALVSSYVLNGMIDEAFGLLKLMG 235
Query: 211 --RERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCR 268
+ R + + +TFSS+L AC G+Q+HA + K+ + D V L++MY K
Sbjct: 236 SDKNRFRGDYFTFSSLLSAC-----RIEQGKQIHAILFKVSYQFDIPVATALLNMYAKSN 290
Query: 269 LLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLR 328
L DA FE +V +N+ SWNAM+VG+ +NG EA + M +Q E +
Sbjct: 291 HLSDARECFESMV-VRNVVSWNAMIVGFAQNGEGREAMRLFGQMLLENLQPDELTFASVL 349
Query: 329 IACSSISA 336
+C+ SA
Sbjct: 350 SSCAKFSA 357
Score = 85.5 bits (210), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 92/183 (50%), Gaps = 11/183 (6%)
Query: 137 KQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNC-R 195
KQ HG + K G ++ L L+ Y K R +DAD +F ++ N V W I R
Sbjct: 56 KQEHGFMVKQGIYNSLFLQNKLLQAYTKIREFDDADKLFDEMPLRNIVTWNILIHGVIQR 115
Query: 196 EGHF-HQVFNDFKEMGR---ERIKKNSYTFSSVLKACGGVDDDGN--CGRQMHANIVKIG 249
+G H+ F + R + + +F +++ C D N G Q+H +VK G
Sbjct: 116 DGDTNHRAHLGFCYLSRILFTDVSLDHVSFMGLIRLC---TDSTNMKAGIQLHCLMVKQG 172
Query: 250 LESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFL 309
LES + LV YGKC L+ +A RVFE ++D +++ WNA++ Y+ NG+ EA L
Sbjct: 173 LESSCFPSTSLVHFYGKCGLIVEARRVFEAVLD-RDLVLWNALVSSYVLNGMIDEAFGLL 231
Query: 310 YLM 312
LM
Sbjct: 232 KLM 234
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 107/254 (42%), Gaps = 9/254 (3%)
Query: 59 CGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAW 118
CG + AR++F+ + RD W ++ YV E L M K F
Sbjct: 190 CGLIVEARRVFEAVLDRDLVLWNALVSSYVLNGMIDEAFGLLKLMGSDKNRFRGDYF--- 246
Query: 119 IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL 178
+L AC +E GKQ+H +LFK+ +I + +L+N Y K L DA F +
Sbjct: 247 TFSSLLSAC----RIEQGKQIHAILFKVSYQFDIPVATALLNMYAKSNHLSDARECFESM 302
Query: 179 KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCG 238
N V W A IV + G + F +M E ++ + TF+SVL +C
Sbjct: 303 VVRNVVSWNAMIVGFAQNGEGREAMRLFGQMLLENLQPDELTFASVLSSCAKFSAIWEI- 361
Query: 239 RQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIR 298
+Q+ A + K G V L+ Y + L +A F I + ++ SW +++
Sbjct: 362 KQVQAMVTKKGSADFLSVANSLISSYSRNGNLSEALLCFHSIRE-PDLVSWTSVIGALAS 420
Query: 299 NGLYVEATKFLYLM 312
+G E+ + M
Sbjct: 421 HGFAEESLQMFESM 434
>sp|Q9FM64|PP431_ARATH Pentatricopeptide repeat-containing protein At5g55740,
chloroplastic OS=Arabidopsis thaliana GN=CRR21 PE=2 SV=1
Length = 830
Score = 127 bits (318), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 81/230 (35%), Positives = 120/230 (52%), Gaps = 9/230 (3%)
Query: 91 ADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGS-- 148
+ +E ++L EM R L + P I +L+ CV ++ GKQ+H + K G
Sbjct: 49 GEIKEALSLVTEMDFRN----LRIGPE-IYGEILQGCVYERDLSTGKQIHARILKNGDFY 103
Query: 149 SRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKE 208
+RN + L+ FY K LE A+ +FS+L+ N W A I CR G F E
Sbjct: 104 ARNEYIETKLVIFYAKCDALEIAEVLFSKLRVRNVFSWAAIIGVKCRIGLCEGALMGFVE 163
Query: 209 MGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCR 268
M I +++ +V KACG + GR +H +VK GLE +V L DMYGKC
Sbjct: 164 MLENEIFPDNFVVPNVCKACGALKWS-RFGRGVHGYVVKSGLEDCVFVASSLADMYGKCG 222
Query: 269 LLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
+L DA +VF+ I D+ N +WNA++VGY++NG EA + M+ G++
Sbjct: 223 VLDDASKVFDEIPDR-NAVAWNALMVGYVQNGKNEEAIRLFSDMRKQGVE 271
Score = 124 bits (312), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 81/264 (30%), Positives = 135/264 (51%), Gaps = 9/264 (3%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+ CG LD A ++FDE+P R+ +W ++VGYV +E I LF++M RK+G V
Sbjct: 217 MYGKCGVLDDASKVFDEIPDRNAVAWNALMVGYVQNGKNEEAIRLFSDM--RKQG----V 270
Query: 115 FPAWIIVCV-LKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADF 173
P + V L A +E GKQ H + G + L SL+NFY K +E A+
Sbjct: 271 EPTRVTVSTCLSASANMGGVEEGKQSHAIAIVNGMELDNILGTSLLNFYCKVGLIEYAEM 330
Query: 174 VFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDD 233
VF ++ + V W I ++G + M E++K + T ++++ A ++
Sbjct: 331 VFDRMFEKDVVTWNLIISGYVQQGLVEDAIYMCQLMRLEKLKYDCVTLATLMSAAARTEN 390
Query: 234 DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
G+++ ++ ESD + ++DMY KC + DA++VF+ V+ K++ WN +L
Sbjct: 391 L-KLGKEVQCYCIRHSFESDIVLASTVMDMYAKCGSIVDAKKVFDSTVE-KDLILWNTLL 448
Query: 294 VGYIRNGLYVEATKFLYLMKASGI 317
Y +GL EA + Y M+ G+
Sbjct: 449 AAYAESGLSGEALRLFYGMQLEGV 472
Score = 122 bits (306), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 85/318 (26%), Positives = 157/318 (49%), Gaps = 16/318 (5%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFL-NRLLLMHVSC 59
MD L I ++Y +++ C +++D + ++ I K + ++ +L++ + C
Sbjct: 61 MDFRNLRIGPEIYGEILQGCVYERDLSTGKQIHARILKNGDFYARNEYIETKLVIFYAKC 120
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AW 118
L+ A LF ++ +R+ SWA +I + + + F EM++ + +FP +
Sbjct: 121 DALEIAEVLFSKLRVRNVFSWAAIIGVKCRIGLCEGALMGFVEMLENE------IFPDNF 174
Query: 119 IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL 178
++ V KAC G+ VHG + K G + + SL + YGK L+DA VF ++
Sbjct: 175 VVPNVCKACGALKWSRFGRGVHGYVVKSGLEDCVFVASSLADMYGKCGVLDDASKVFDEI 234
Query: 179 KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC---GGVDDDG 235
N V W A +V + G + F +M ++ ++ T S+ L A GGV++
Sbjct: 235 PDRNAVAWNALMVGYVQNGKNEEAIRLFSDMRKQGVEPTRVTVSTCLSASANMGGVEE-- 292
Query: 236 NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
G+Q HA + G+E D + L++ Y K L+ AE VF+ + + K++ +WN ++ G
Sbjct: 293 --GKQSHAIAIVNGMELDNILGTSLLNFYCKVGLIEYAEMVFDRMFE-KDVVTWNLIISG 349
Query: 296 YIRNGLYVEATKFLYLMK 313
Y++ GL +A LM+
Sbjct: 350 YVQQGLVEDAIYMCQLMR 367
Score = 65.5 bits (158), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 63/291 (21%), Positives = 120/291 (41%), Gaps = 44/291 (15%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL + G ++ A +FD M +D +W ++I GYV ++ I + ++M+ +K
Sbjct: 315 LLNFYCKVGLIEYAEMVFDRMFEKDVVTWNLIISGYVQQGLVEDAIYM-CQLMRLEK--- 370
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
L + + ++ A T N++LGK+V + +I L ++++ Y K + DA
Sbjct: 371 -LKYDCVTLATLMSAAARTENLKLGKEVQCYCIRHSFESDIVLASTVMDMYAKCGSIVDA 429
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--- 228
VF + ++W + G + F M E + N T++ ++ +
Sbjct: 430 KKVFDSTVEKDLILWNTLLAAYAESGLSGEALRLFYGMQLEGVPPNVITWNLIILSLLRN 489
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
G VD+ + QM ++ G++ N+ S
Sbjct: 490 GQVDEAKDMFLQMQSS--------------GII----------------------PNLIS 513
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKI 339
W M+ G ++NG EA FL M+ SG++ I AC+ +++ I
Sbjct: 514 WTTMMNGMVQNGCSEEAILFLRKMQESGLRPNAFSITVALSACAHLASLHI 564
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 93/202 (46%), Gaps = 20/202 (9%)
Query: 42 IKPTLLFLNRLLLMHVSCGQLDTARQLFDEMP----LRDFNSWAVMIVGYVDVADYQECI 97
+ P ++ N ++L + GQ+D A+ +F +M + + SW M+ G V +E I
Sbjct: 472 VPPNVITWNLIILSLLRNGQVDEAKDMFLQMQSSGIIPNLISWTTMMNGMVQNGCSEEAI 531
Query: 98 TLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFK-LGSSRNISLTG 156
+M + L A+ I L AC ++ +G+ +HG + + L S +S+
Sbjct: 532 LFLRKMQESG-----LRPNAFSITVALSACAHLASLHIGRTIHGYIIRNLQHSSLVSIET 586
Query: 157 SLINFYGKFRCLEDADFVF-----SQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGR 211
SL++ Y K + A+ VF S+L N ++ + N +E ++ + +G
Sbjct: 587 SLVDMYAKCGDINKAEKVFGSKLYSELPLSNAMISAYALYGNLKEA--IALYRSLEGVG- 643
Query: 212 ERIKKNSYTFSSVLKACGGVDD 233
+K ++ T ++VL AC D
Sbjct: 644 --LKPDNITITNVLSACNHAGD 663
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 59/295 (20%), Positives = 115/295 (38%), Gaps = 39/295 (13%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R + + ++ + ++ M+ CG + A+++FD +D W ++ Y + E +
Sbjct: 403 RHSFESDIVLASTVMDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAYAESGLSGEALR 462
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
LF G L P +I L N ++ + + ++ SS I
Sbjct: 463 LF-------YGMQLEGVPPNVITWNLIILSLLRNGQV-DEAKDMFLQMQSSGIIP----- 509
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
N + WT + + G + ++M ++ N+
Sbjct: 510 -----------------------NLISWTTMMNGMVQNGCSEEAILFLRKMQESGLRPNA 546
Query: 219 YTFSSVLKACGGVDDDGNCGRQMHANIVK-IGLESDEYVQCGLVDMYGKCRLLRDAERVF 277
++ + L AC + + GR +H I++ + S ++ LVDMY KC + AE+VF
Sbjct: 547 FSITVALSACAHLASL-HIGRTIHGYIIRNLQHSSLVSIETSLVDMYAKCGDINKAEKVF 605
Query: 278 ELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+ + S NAM+ Y G EA ++ G++ I ++ AC+
Sbjct: 606 GSKLYSELPLS-NAMISAYALYGNLKEAIALYRSLEGVGLKPDNITITNVLSACN 659
>sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770
OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1
Length = 694
Score = 126 bits (316), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 76/297 (25%), Positives = 142/297 (47%), Gaps = 11/297 (3%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL--RDFNSWAVMIVGYVDVADYQEC 96
R+ + N L+ ++ C +L +AR +F+ +PL R SW ++ Y + E
Sbjct: 147 RLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEA 206
Query: 97 ITLFAEMMKRKKGHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLT 155
+ +F++M K + V P W+ +V VL A C +++ G+ +H + K+G L
Sbjct: 207 LEIFSQMRK------MDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLL 260
Query: 156 GSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIK 215
SL Y K + A +F ++K N ++W A I + G+ + + F EM + ++
Sbjct: 261 ISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVR 320
Query: 216 KNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAER 275
++ + +S + AC V R M+ + + D ++ L+DM+ KC + A
Sbjct: 321 PDTISITSAISACAQVGSLEQ-ARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARL 379
Query: 276 VFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
VF+ +D +++ W+AM+VGY +G EA M+ G+ + L +AC+
Sbjct: 380 VFDRTLD-RDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACN 435
Score = 121 bits (303), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 87/317 (27%), Positives = 145/317 (45%), Gaps = 12/317 (3%)
Query: 25 DSAGAFELLNHIRKRV---NIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWA 81
DSA L I R+ ++ + + +L+ S G + ARQ+FD++P W
Sbjct: 29 DSATHKAQLKQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWN 88
Query: 82 VMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHG 141
+I GY +Q+ + +++ M + FP +LKAC ++++G+ VH
Sbjct: 89 AIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPH-----LLKACSGLSHLQMGRFVHA 143
Query: 142 LLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFS--QLKRHNTVVWTAKIVNNCREGHF 199
+F+LG ++ + LI Y K R L A VF L V WTA + + G
Sbjct: 144 QVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEP 203
Query: 200 HQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCG 259
+ F +M + +K + SVL A + D GR +HA++VK+GLE + +
Sbjct: 204 MEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQ-GRSIHASVVKMGLEIEPDLLIS 262
Query: 260 LVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQI 319
L MY KC + A+ +F+ + N+ WNAM+ GY +NG EA + M ++
Sbjct: 263 LNTMYAKCGQVATAKILFDKM-KSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRP 321
Query: 320 QESLINDLRIACSSISA 336
I AC+ + +
Sbjct: 322 DTISITSAISACAQVGS 338
Score = 84.7 bits (208), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 69/261 (26%), Positives = 120/261 (45%), Gaps = 14/261 (5%)
Query: 36 IRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQE 95
++ + I+P LL L M+ CGQ+ TA+ LFD+M + W MI GY +E
Sbjct: 249 VKMGLEIEPDLLI--SLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYARE 306
Query: 96 CITLFAEMMKRKKGHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISL 154
I +F EM+ + V P I I + AC ++E + ++ + + ++ +
Sbjct: 307 AIDMFHEMINKD------VRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFI 360
Query: 155 TGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERI 214
+ +LI+ + K +E A VF + + VVW+A IV G + + ++ M R +
Sbjct: 361 SSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGV 420
Query: 215 KKNSYTFSSVLKAC--GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRD 272
N TF +L AC G+ +G A+ KI + Y C ++D+ G+ L
Sbjct: 421 HPNDVTFLGLLMACNHSGMVREGWWFFNRMAD-HKINPQQQHYA-C-VIDLLGRAGHLDQ 477
Query: 273 AERVFELIVDKKNIASWNAML 293
A V + + + + W A+L
Sbjct: 478 AYEVIKCMPVQPGVTVWGALL 498
>sp|Q9M9E2|PPR45_ARATH Pentatricopeptide repeat-containing protein At1g15510,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H73 PE=2
SV=1
Length = 866
Score = 126 bits (316), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 93/311 (29%), Positives = 153/311 (49%), Gaps = 12/311 (3%)
Query: 8 ITTDMYT--CLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTA 65
+ D+YT C+++ C D A E+ H+ R + + +N L+ M+V CG + +A
Sbjct: 192 VKPDVYTFPCVLRTCGGIPDLARGKEVHVHV-VRYGYELDIDVVNALITMYVKCGDVKSA 250
Query: 66 RQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI-IVCVL 124
R LFD MP RD SW MI GY + E + LF M +G L V P + + V+
Sbjct: 251 RLLFDRMPRRDIISWNAMISGYFENGMCHEGLELFFAM----RG--LSVDPDLMTLTSVI 304
Query: 125 KACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTV 184
AC + LG+ +H + G + +IS+ SL Y +A+ +FS+++R + V
Sbjct: 305 SACELLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIV 364
Query: 185 VWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHAN 244
WT I + + ++ M ++ +K + T ++VL AC + D + G ++H
Sbjct: 365 SWTTMISGYEYNFLPDKAIDTYRMMDQDSVKPDEITVAAVLSACATL-GDLDTGVELHKL 423
Query: 245 IVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVE 304
+K L S V L++MY KC+ + A +F I +KN+ SW +++ G N E
Sbjct: 424 AIKARLISYVIVANNLINMYSKCKCIDKALDIFHNI-PRKNVISWTSIIAGLRLNNRCFE 482
Query: 305 ATKFLYLMKAS 315
A FL MK +
Sbjct: 483 ALIFLRQMKMT 493
Score = 109 bits (272), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 84/338 (24%), Positives = 151/338 (44%), Gaps = 15/338 (4%)
Query: 1 MDNLCLPITTDMYTCLIKECTF---QKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHV 57
M L + + D++ L++ C + Q++ + + + + ++ N L M V
Sbjct: 85 MQELRVAVDEDVFVALVRLCEWKRAQEEGSKVYSIALSSMSSLGVE----LGNAFLAMFV 140
Query: 58 SCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM-LLVFP 116
G L A +F +M R+ SW V++ GY + E + L+ M+ + FP
Sbjct: 141 RFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLWVGGVKPDVYTFP 200
Query: 117 AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFS 176
CVL+ C ++ GK+VH + + G +I + +LI Y K ++ A +F
Sbjct: 201 -----CVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFD 255
Query: 177 QLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGN 236
++ R + + W A I G H+ F M + + T +SV+ AC + D
Sbjct: 256 RMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISACELLGDR-R 314
Query: 237 CGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGY 296
GR +HA ++ G D V L MY R+AE++F + ++K+I SW M+ GY
Sbjct: 315 LGRDIHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRM-ERKDIVSWTTMISGY 373
Query: 297 IRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
N L +A +M ++ E + + AC+++
Sbjct: 374 EYNFLPDKAIDTYRMMDQDSVKPDEITVAAVLSACATL 411
Score = 98.2 bits (243), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 111/222 (50%), Gaps = 9/222 (4%)
Query: 119 IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL 178
+ V +++ C E G +V+ + SS + L + + + +F L DA +VF ++
Sbjct: 96 VFVALVRLCEWKRAQEEGSKVYSIALSSMSSLGVELGNAFLAMFVRFGNLVDAWYVFGKM 155
Query: 179 KRHNTVVWTAKIVNNCREGHFHQVFNDFKEM-GRERIKKNSYTFSSVLKACGGVDDDGNC 237
N W + ++G+F + + M +K + YTF VL+ CGG+ D
Sbjct: 156 SERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLWVGGVKPDVYTFPCVLRTCGGIPDLAR- 214
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYI 297
G+++H ++V+ G E D V L+ MY KC ++ A +F+ + +++I SWNAM+ GY
Sbjct: 215 GKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRM-PRRDIISWNAMISGYF 273
Query: 298 RNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKI 339
NG+ E + + M+ G+ + DL S ISA ++
Sbjct: 274 ENGMCHEGLELFFAMR--GLSVDP----DLMTLTSVISACEL 309
Score = 92.4 bits (228), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 77/289 (26%), Positives = 125/289 (43%), Gaps = 21/289 (7%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L M+++ G A +LF M +D SW MI GY + I + MM +
Sbjct: 336 NSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTMISGYEYNFLPDKAIDTY-RMMDQDS- 393
Query: 110 HMLLVFPAWIIVC-VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
V P I V VL AC +++ G ++H L K + + +LIN Y K +C+
Sbjct: 394 ----VKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISYVIVANNLINMYSKCKCI 449
Query: 169 EDADFVFSQLKRHNTVVWTAKIV-----NNCREGHFHQVFNDFKEMGRERIKKNSYTFSS 223
+ A +F + R N + WT+ I N C E +F +M + +
Sbjct: 450 DKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEA---LIFLRQMKMTLQPNAITLTAALA 506
Query: 224 VLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
G + CG+++HA++++ G+ D+++ L+DMY +C + A F K
Sbjct: 507 ACARIGAL----MCGKEIHAHVLRTGVGLDDFLPNALLDMYVRCGRMNTAWSQFN--SQK 560
Query: 284 KNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
K++ SWN +L GY G + M S ++ E L CS
Sbjct: 561 KDVTSWNILLTGYSERGQGSMVVELFDRMVKSRVRPDEITFISLLCGCS 609
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/248 (19%), Positives = 100/248 (40%), Gaps = 8/248 (3%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
++ N L+ M+ C +D A +F +P ++ SW +I G E + +M
Sbjct: 433 VIVANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEALIFLRQMKM 492
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
+ + + + A + A +C GK++H + + G + L +L++ Y +
Sbjct: 493 TLQPNAITLTAALAACARIGALMC------GKEIHAHVLRTGVGLDDFLPNALLDMYVRC 546
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
+ A F+ K+ + W + G V F M + R++ + TF S+L
Sbjct: 547 GRMNTAWSQFNSQKK-DVTSWNILLTGYSERGQGSMVVELFDRMVKSRVRPDEITFISLL 605
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
C G + + G+ + +VD+ G+ L++A + + + +
Sbjct: 606 CGCSK-SQMVRQGLMYFSKMEDYGVTPNLKHYACVVDLLGRAGELQEAHKFIQKMPVTPD 664
Query: 286 IASWNAML 293
A W A+L
Sbjct: 665 PAVWGALL 672
>sp|Q9SS97|PP205_ARATH Putative pentatricopeptide repeat-containing protein At3g01580
OS=Arabidopsis thaliana GN=PCMP-E87 PE=3 SV=2
Length = 660
Score = 125 bits (315), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 87/304 (28%), Positives = 144/304 (47%), Gaps = 21/304 (6%)
Query: 2 DNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQ 61
DN LP+ +K C ++ + ++K V + L + L+ M++ CG+
Sbjct: 59 DNFTLPVA-------LKACGELREVNYGEMIHGFVKKDVTLGSDLYVGSSLIYMYIKCGR 111
Query: 62 LDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI-I 120
+ A ++FDE+ D +W+ M+ G+ + + F M+ V P + +
Sbjct: 112 MIEALRMFDELEKPDIVTWSSMVSGFEKNGSPYQAVEFFRRMVMASD-----VTPDRVTL 166
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
+ ++ AC N LG+ VHG + + G S ++SL SL+N Y K R ++A +F +
Sbjct: 167 ITLVSACTKLSNSRLGRCVHGFVIRRGFSNDLSLVNSLLNCYAKSRAFKEAVNLFKMIAE 226
Query: 181 HNTVVWTAKI---VNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC 237
+ + W+ I V N VFND + G E N T VL+AC D
Sbjct: 227 KDVISWSTVIACYVQNGAAAEALLVFNDMMDDGTE---PNVATVLCVLQACAAAHDLEQ- 282
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYI 297
GR+ H ++ GLE++ V LVDMY KC +A VF I +K++ SW A++ G+
Sbjct: 283 GRKTHELAIRKGLETEVKVSTALVDMYMKCFSPEEAYAVFSRI-PRKDVVSWVALISGFT 341
Query: 298 RNGL 301
NG+
Sbjct: 342 LNGM 345
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/294 (26%), Positives = 138/294 (46%), Gaps = 19/294 (6%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L +N LL + A LF + +D SW+ +I YV E + +F +MM
Sbjct: 198 LSLVNSLLNCYAKSRAFKEAVNLFKMIAEKDVISWSTVIACYVQNGAAAEALLVFNDMMD 257
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
+ ++CVL+AC ++E G++ H L + G + ++ +L++ Y K
Sbjct: 258 DGTEPNVAT-----VLCVLQACAAAHDLEQGRKTHELAIRKGLETEVKVSTALVDMYMKC 312
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRE-RIKKNSYTFSSV 224
E+A VFS++ R + V W A I G H+ +F M E + ++ V
Sbjct: 313 FSPEEAYAVFSRIPRKDVVSWVALISGFTLNGMAHRSIEEFSIMLLENNTRPDAILMVKV 372
Query: 225 LKACG--GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282
L +C G + C H+ ++K G +S+ ++ LV++Y +C L +A +VF I
Sbjct: 373 LGSCSELGFLEQAKC---FHSYVIKYGFDSNPFIGASLVELYSRCGSLGNASKVFNGIAL 429
Query: 283 KKNIASWNAMLVGYIRNGLYVEATK----FLYLMKASGIQIQESLINDLRIACS 332
K + W +++ GY G++ + TK F +++K+S ++ E + ACS
Sbjct: 430 KDTVV-WTSLITGY---GIHGKGTKALETFNHMVKSSEVKPNEVTFLSILSACS 479
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/245 (24%), Positives = 118/245 (48%), Gaps = 13/245 (5%)
Query: 65 ARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVL 124
ARQ+F EM R W ++ ++E + F+ M + ++ P L
Sbjct: 13 ARQMFGEMTKRSLYQWNTLLKSLSREKQWEEVLYHFSHMFRDEEKPDNFTLPV-----AL 67
Query: 125 KACVCTMNMELGKQVHGLLFK---LGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH 181
KAC + G+ +HG + K LGS ++ + SLI Y K + +A +F +L++
Sbjct: 68 KACGELREVNYGEMIHGFVKKDVTLGS--DLYVGSSLIYMYIKCGRMIEALRMFDELEKP 125
Query: 182 NTVVWTAKIVNNCREGHFHQVFNDFKEM-GRERIKKNSYTFSSVLKACGGVDDDGNCGRQ 240
+ V W++ + + G +Q F+ M + + T +++ AC + + GR
Sbjct: 126 DIVTWSSMVSGFEKNGSPYQAVEFFRRMVMASDVTPDRVTLITLVSACTKLSNS-RLGRC 184
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
+H +++ G +D + L++ Y K R ++A +F++I +K ++ SW+ ++ Y++NG
Sbjct: 185 VHGFVIRRGFSNDLSLVNSLLNCYAKSRAFKEAVNLFKMIAEK-DVISWSTVIACYVQNG 243
Query: 301 LYVEA 305
EA
Sbjct: 244 AAAEA 248
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 95/183 (51%), Gaps = 4/183 (2%)
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
+ F KF DA +F ++ + + W + + RE + +V F M R+ K ++
Sbjct: 1 MGFCRKFSSSVDARQMFGEMTKRSLYQWNTLLKSLSREKQWEEVLYHFSHMFRDEEKPDN 60
Query: 219 YTFSSVLKACGGVDDDGNCGRQMHANIVK-IGLESDEYVQCGLVDMYGKCRLLRDAERVF 277
+T LKACG + + N G +H + K + L SD YV L+ MY KC + +A R+F
Sbjct: 61 FTLPVALKACGELREV-NYGEMIHGFVKKDVTLGSDLYVGSSLIYMYIKCGRMIEALRMF 119
Query: 278 ELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLM-KASGIQIQESLINDLRIACSSISA 336
+ + +K +I +W++M+ G+ +NG +A +F M AS + + L AC+ +S
Sbjct: 120 DEL-EKPDIVTWSSMVSGFEKNGSPYQAVEFFRRMVMASDVTPDRVTLITLVSACTKLSN 178
Query: 337 SKI 339
S++
Sbjct: 179 SRL 181
>sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330
OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1
Length = 715
Score = 125 bits (315), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 72/276 (26%), Positives = 143/276 (51%), Gaps = 13/276 (4%)
Query: 62 LDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIV 121
+D+ R++F+ MP +D S+ +I GY Y++ + + EM G L ++ +
Sbjct: 192 IDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREM-----GTTDLKPDSFTLS 246
Query: 122 CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH 181
VL +++ GK++HG + + G ++ + SL++ Y K +ED++ VFS+L
Sbjct: 247 SVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCR 306
Query: 182 NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQM 241
+ + W + + + G +++ F++M ++K + FSSV+ AC + + G+Q+
Sbjct: 307 DGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATL-HLGKQL 365
Query: 242 HANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI---ASWNAMLVGYIR 298
H +++ G S+ ++ LVDMY KC ++ A ++F D+ N+ SW A+++G+
Sbjct: 366 HGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIF----DRMNVLDEVSWTAIIMGHAL 421
Query: 299 NGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
+G EA MK G++ + + ACS +
Sbjct: 422 HGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHV 457
Score = 107 bits (267), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/293 (25%), Positives = 129/293 (44%), Gaps = 43/293 (14%)
Query: 79 SWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQ 138
+W +I + D + + + + F EM + VFP+ VLK+C M++ G+
Sbjct: 72 AWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPS-----VLKSCTMMMDLRFGES 126
Query: 139 VHGLLFKLGSSRNISLTGSLINFYGKF------------------RCLEDAD-------- 172
VHG + +LG ++ +L+N Y K R D
Sbjct: 127 VHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETC 186
Query: 173 ----------FVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFS 222
VF + R + V + I + G + +EMG +K +S+T S
Sbjct: 187 IMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLS 246
Query: 223 SVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282
SVL D G+++H +++ G++SD Y+ LVDMY K + D+ERVF +
Sbjct: 247 SVLPIFSEYVDVIK-GKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYC 305
Query: 283 KKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
+ I SWN+++ GY++NG Y EA + M + ++ + + AC+ ++
Sbjct: 306 RDGI-SWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLA 357
Score = 104 bits (260), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 82/314 (26%), Positives = 140/314 (44%), Gaps = 39/314 (12%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R I + + L+ M+ +++ + ++F + RD SW ++ GYV Y E +
Sbjct: 270 RKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALR 329
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
LF +M+ K + F + V+ AC + LGKQ+HG + + G NI + +L
Sbjct: 330 LFRQMVTAKVKPGAVAFSS-----VIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASAL 384
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
++ Y K ++ A +F ++ + V WTA I+ + GH H+ + F+EM R+ +K N
Sbjct: 385 VDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQ 444
Query: 219 YTFSSVLKAC---GGVDDD---------------------------GNCGR--QMHANIV 246
F +VL AC G VD+ G G+ + + I
Sbjct: 445 VAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFIS 504
Query: 247 KIGLESDEYVQCGLVDMYGKCRLLRDAERVFELI--VDKKNIASWNAMLVGYIRNGLYVE 304
K+ +E V L+ + L AE+V E I VD +N+ ++ M Y NG + E
Sbjct: 505 KMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVLMCNMYASNGRWKE 564
Query: 305 ATKFLYLMKASGIQ 318
K M+ G++
Sbjct: 565 MAKLRLRMRKKGLR 578
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 92/219 (42%), Gaps = 39/219 (17%)
Query: 136 GKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCR 195
KQ+H + S + S + +I+ Y + L +A +F LK + W + I
Sbjct: 24 AKQLHAQFIRTQSLSHTSAS-IVISIYTNLKLLHEALLLFKTLKSPPVLAWKSVIRCFTD 82
Query: 196 EGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEY 255
+ F + F EM + F SVLK+C + D G +H IV++G++ D Y
Sbjct: 83 QSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDL-RFGESVHGFIVRLGMDCDLY 141
Query: 256 VQCGLVDMYGK---------------------------------CRL---LRDAERVFEL 279
L++MY K C + + RVFE
Sbjct: 142 TGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIMPFGIDSVRRVFE- 200
Query: 280 IVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
++ +K++ S+N ++ GY ++G+Y +A + + M + ++
Sbjct: 201 VMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLK 239
>sp|Q9FWA6|PP207_ARATH Pentatricopeptide repeat-containing protein At3g02330
OS=Arabidopsis thaliana GN=PCMP-E90 PE=2 SV=2
Length = 903
Score = 125 bits (314), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 87/358 (24%), Positives = 159/358 (44%), Gaps = 27/358 (7%)
Query: 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCG 60
M + ++ +Y +++ C + +L H K + + L M+ C
Sbjct: 272 MQKVNAGVSQSIYASVLRSCAALSELRLGGQLHAHALKS-DFAADGIVRTATLDMYAKCD 330
Query: 61 QLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWII 120
+ A+ LFD + S+ MI GY + + LF +M G F +
Sbjct: 331 NMQDAQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLG-----FDEISL 385
Query: 121 VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR 180
V +AC + G Q++GL K S ++ + + I+ YGK + L +A VF +++R
Sbjct: 386 SGVFRACALVKGLSEGLQIYGLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRR 445
Query: 181 HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQ 240
+ V W A I + + G ++ F M R RI+ + +TF S+LKAC G G +
Sbjct: 446 RDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSILKACTG--GSLGYGME 503
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA------------- 287
+H++IVK G+ S+ V C L+DMY KC ++ +AE++ + N++
Sbjct: 504 IHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRANVSGTMEELEKMHNKR 563
Query: 288 ------SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASKI 339
SWN+++ GY+ +A M GI + + C++++++ +
Sbjct: 564 LQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGL 621
Score = 122 bits (305), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 92/354 (25%), Positives = 160/354 (45%), Gaps = 35/354 (9%)
Query: 8 ITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNI---KPTLLFLNRLLLMHVSCGQLDT 64
++T ++ + KEC Q GA EL + I +PT LN LL ++ + +
Sbjct: 46 VSTTNFSFVFKECAKQ----GALELGKQAHAHMIISGFRPTTFVLNCLLQVYTNSRDFVS 101
Query: 65 ARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR-------------KKGHM 111
A +FD+MPLRD SW MI GY D + + F M R + G
Sbjct: 102 ASMVFDKMPLRDVVSWNKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGES 161
Query: 112 L-------------LVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
L + F +LK C + LG Q+HG++ ++G ++ +L
Sbjct: 162 LKSIEVFVDMGREGIEFDGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASAL 221
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
++ Y K + ++ VF + N+V W+A I + FKEM + +
Sbjct: 222 LDMYAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQ 281
Query: 219 YTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE 278
++SVL++C + + G Q+HA+ +K +D V+ +DMY KC ++DA+ +F+
Sbjct: 282 SIYASVLRSCAAL-SELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFD 340
Query: 279 LIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+ N S+NAM+ GY + +A + + +SG+ E ++ + AC+
Sbjct: 341 -NSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACA 393
Score = 108 bits (270), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 90/307 (29%), Positives = 144/307 (46%), Gaps = 36/307 (11%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N + M+ C L A ++FDEM RD SW +I + E + LF M++ +
Sbjct: 421 NAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIE 480
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
F + +LKAC ++ G ++H + K G + N S+ SLI+ Y K +E
Sbjct: 481 PDEFTFGS-----ILKACTGG-SLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIE 534
Query: 170 DADFVFSQL--------------KRHNT------VVWTAKI---VNNCREGHFHQVFNDF 206
+A+ + S+ K HN V W + I V + +F
Sbjct: 535 EAEKIHSRFFQRANVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRM 594
Query: 207 KEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGK 266
EMG I + +T+++VL C + G G+Q+HA ++K L+SD Y+ LVDMY K
Sbjct: 595 MEMG---ITPDKFTYATVLDTCANLASAG-LGKQIHAQVIKKELQSDVYICSTLVDMYSK 650
Query: 267 CRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQE-SLIN 325
C L D+ +FE + +++ +WNAM+ GY +G EA + M I+ + I+
Sbjct: 651 CGDLHDSRLMFEKSL-RRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFIS 709
Query: 326 DLRIACS 332
LR AC+
Sbjct: 710 ILR-ACA 715
Score = 88.2 bits (217), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 122/247 (49%), Gaps = 10/247 (4%)
Query: 93 YQECITLFA-EMMKRKKGHMLLV---FPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGS 148
++EC A E+ K+ HM++ +++ C+L+ + + V F
Sbjct: 55 FKECAKQGALELGKQAHAHMIISGFRPTTFVLNCLLQVYTNSRDFVSASMV----FDKMP 110
Query: 149 SRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKE 208
R++ +IN Y K + A+ F+ + + V W + + + G + F +
Sbjct: 111 LRDVVSWNKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVD 170
Query: 209 MGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCR 268
MGRE I+ + TF+ +LK C ++D + G Q+H +V++G ++D L+DMY K +
Sbjct: 171 MGREGIEFDGRTFAIILKVCSFLEDT-SLGMQIHGIVVRVGCDTDVVAASALLDMYAKGK 229
Query: 269 LLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLR 328
++ RVF+ I +K N SW+A++ G ++N L A KF M+ + +S+ +
Sbjct: 230 RFVESLRVFQGIPEK-NSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVL 288
Query: 329 IACSSIS 335
+C+++S
Sbjct: 289 RSCAALS 295
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 71/159 (44%), Gaps = 7/159 (4%)
Query: 79 SWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQ 138
SW +I GYV ++ LF MM+ M + + VL C + LGKQ
Sbjct: 570 SWNSIISGYVMKEQSEDAQMLFTRMME-----MGITPDKFTYATVLDTCANLASAGLGKQ 624
Query: 139 VHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGH 198
+H + K ++ + +L++ Y K L D+ +F + R + V W A I G
Sbjct: 625 IHAQVIKKELQSDVYICSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGK 684
Query: 199 FHQVFNDFKEMGRERIKKNSYTFSSVLKACG--GVDDDG 235
+ F+ M E IK N TF S+L+AC G+ D G
Sbjct: 685 GEEAIQLFERMILENIKPNHVTFISILRACAHMGLIDKG 723
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 57/127 (44%), Gaps = 12/127 (9%)
Query: 6 LPITTD--MYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLD 63
+ IT D Y ++ C SAG + ++ + ++ + + L+ M+ CG L
Sbjct: 597 MGITPDKFTYATVLDTCA-NLASAGLGKQIHAQVIKKELQSDVYICSTLVDMYSKCGDLH 655
Query: 64 TARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR--KKGHMLLVFPAWIIV 121
+R +F++ RDF +W MI GY +E I LF M+ K H+ +
Sbjct: 656 DSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHV-------TFI 708
Query: 122 CVLKACV 128
+L+AC
Sbjct: 709 SILRACA 715
>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2
SV=1
Length = 871
Score = 125 bits (314), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 89/289 (30%), Positives = 139/289 (48%), Gaps = 14/289 (4%)
Query: 48 FLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRK 107
F N LL M+ CG LD+A+ +F EM R S+ MI GY E + LF EM +
Sbjct: 333 FCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEG 392
Query: 108 KGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166
+ P + + VL C ++ GK+VH + + +I ++ +L++ Y K
Sbjct: 393 ------ISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCG 446
Query: 167 CLEDADFVFSQLKRHNTVVWTAKI---VNNCREGHFHQVFNDFKEMGRERIKKNSYTFSS 223
+++A+ VFS+++ + + W I NC +FN E +R + T +
Sbjct: 447 SMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLE--EKRFSPDERTVAC 504
Query: 224 VLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
VL AC + + GR++H I++ G SD +V LVDMY KC L A +F+ I
Sbjct: 505 VLPACASL-SAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIA-S 562
Query: 284 KNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
K++ SW M+ GY +G EA M+ +GI+ E L ACS
Sbjct: 563 KDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACS 611
Score = 120 bits (300), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 90/292 (30%), Positives = 148/292 (50%), Gaps = 16/292 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ ++ ++D+AR++FDEM RD SW +I GYV ++ +++F +M+
Sbjct: 234 NSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSG-- 291
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ IV V C + + LG+ VH + K SR +L++ Y K L+
Sbjct: 292 ---IEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLD 348
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A VF ++ + V +T+ I REG + F+EM E I + YT ++VL C
Sbjct: 349 SAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCA 408
Query: 230 G---VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVF-ELIVDKKN 285
+D+ G+++H I + L D +V L+DMY KC +++AE VF E+ V K+
Sbjct: 409 RYRLLDE----GKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRV--KD 462
Query: 286 IASWNAMLVGYIRNGLYVEA-TKFLYLMKASGIQIQESLINDLRIACSSISA 336
I SWN ++ GY +N EA + F L++ E + + AC+S+SA
Sbjct: 463 IISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSA 514
Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/272 (27%), Positives = 127/272 (46%), Gaps = 13/272 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
++L LM+ +CG L A ++FDE+ + W +++ D+ I LF +MM
Sbjct: 133 SKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSG-- 190
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ ++ CV K+ ++ G+Q+HG + K G S+ SL+ FY K + ++
Sbjct: 191 ---VEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVD 247
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A VF ++ + + W + I G + + F +M I+ + T SV C
Sbjct: 248 SARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCA 307
Query: 230 GVDDDG---NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
D + GR +H+ VK ++ L+DMY KC L A+ VF + D +++
Sbjct: 308 ----DSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSD-RSV 362
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
S+ +M+ GY R GL EA K M+ GI
Sbjct: 363 VSYTSMIAGYAREGLAGEAVKLFEEMEEEGIS 394
Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 110/248 (44%), Gaps = 8/248 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ CG + A +F EM ++D SW +I GY E ++LF +++ K+
Sbjct: 436 NALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKR- 494
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ CVL AC + G+++HG + + G + + SL++ Y K L
Sbjct: 495 ---FSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALL 551
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC- 228
A +F + + V WT I G + F +M + I+ + +F S+L AC
Sbjct: 552 LAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACS 611
Query: 229 -GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
G+ D+G + + KI + Y C +VDM + L A R E + +
Sbjct: 612 HSGLVDEGWRFFNIMRHECKIEPTVEHYA-C-IVDMLARTGDLIKAYRFIENMPIPPDAT 669
Query: 288 SWNAMLVG 295
W A+L G
Sbjct: 670 IWGALLCG 677
Score = 75.5 bits (184), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 100/210 (47%), Gaps = 2/210 (0%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
VL+ C + +++ GK+V + G + +L L Y L++A VF ++K
Sbjct: 100 VLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEK 159
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
+ W + + G F FK+M ++ +SYTFS V K+ + + G Q+H
Sbjct: 160 ALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSV-HGGEQLH 218
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
I+K G V LV Y K + + A +VF+ + + +++ SWN+++ GY+ NGL
Sbjct: 219 GFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTE-RDVISWNSIINGYVSNGLA 277
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIACS 332
+ M SGI+I + I + C+
Sbjct: 278 EKGLSVFVQMLVSGIEIDLATIVSVFAGCA 307
>sp|Q9LRV9|PP228_ARATH Pentatricopeptide repeat-containing protein At3g13880
OS=Arabidopsis thaliana GN=PCMP-E89 PE=2 SV=1
Length = 748
Score = 124 bits (312), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 92/314 (29%), Positives = 152/314 (48%), Gaps = 15/314 (4%)
Query: 31 ELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDV 90
ELL+ + + + +N L+ M+ CG+LD A LFD RD SW +I GYV V
Sbjct: 168 ELLHGLVVVNGLSQQVFLINVLIDMYSKCGKLDQAMSLFDRCDERDQVSWNSLISGYVRV 227
Query: 91 ADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN---MELGKQVHGLLFKLG 147
+E + L A+M + L + + VLKAC +N +E G +H KLG
Sbjct: 228 GAAEEPLNLLAKMHRDG-----LNLTTYALGSVLKACCINLNEGFIEKGMAIHCYTAKLG 282
Query: 148 SSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKI-----VNNCREGHFHQV 202
+I + +L++ Y K L++A +FS + N V + A I ++ + +
Sbjct: 283 MEFDIVVRTALLDMYAKNGSLKEAIKLFSLMPSKNVVTYNAMISGFLQMDEITDEASSEA 342
Query: 203 FNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVD 262
F F +M R ++ + TFS VLKAC GRQ+HA I K +SDE++ L++
Sbjct: 343 FKLFMDMQRRGLEPSPSTFSVVLKACSAAKTL-EYGRQIHALICKNNFQSDEFIGSALIE 401
Query: 263 MYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQES 322
+Y D + F K++IASW +M+ +++N A + +S I+ +E
Sbjct: 402 LYALMGSTEDGMQCFA-STSKQDIASWTSMIDCHVQNEQLESAFDLFRQLFSSHIRPEEY 460
Query: 323 LINDLRIACSSISA 336
++ + AC+ +A
Sbjct: 461 TVSLMMSACADFAA 474
Score = 120 bits (300), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 86/286 (30%), Positives = 140/286 (48%), Gaps = 13/286 (4%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+ C +L ARQLFD MP R+ S+ +I GY + Y++ + LF E + L
Sbjct: 91 MYCKCRELGFARQLFDRMPERNIISFNSLISGYTQMGFYEQAMELFLEAREAN-----LK 145
Query: 115 FPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFV 174
+ L C +++LG+ +HGL+ G S+ + L LI+ Y K L+ A +
Sbjct: 146 LDKFTYAGALGFCGERCDLDLGELLHGLVVVNGLSQQVFLINVLIDMYSKCGKLDQAMSL 205
Query: 175 FSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDD 234
F + + V W + I R G + N +M R+ + +Y SVLKAC ++
Sbjct: 206 FDRCDERDQVSWNSLISGYVRVGAAEEPLNLLAKMHRDGLNLTTYALGSVLKACCINLNE 265
Query: 235 G--NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAM 292
G G +H K+G+E D V+ L+DMY K L++A ++F L+ KN+ ++NAM
Sbjct: 266 GFIEKGMAIHCYTAKLGMEFDIVVRTALLDMYAKNGSLKEAIKLFSLM-PSKNVVTYNAM 324
Query: 293 LVGY-----IRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSS 333
+ G+ I + EA K M+ G++ S + + ACS+
Sbjct: 325 ISGFLQMDEITDEASSEAFKLFMDMQRRGLEPSPSTFSVVLKACSA 370
Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/285 (25%), Positives = 129/285 (45%), Gaps = 12/285 (4%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADY-----QECITLFAEMMKR 106
LL M+ G L A +LF MP ++ ++ MI G++ + + E LF +M +R
Sbjct: 293 LLDMYAKNGSLKEAIKLFSLMPSKNVVTYNAMISGFLQMDEITDEASSEAFKLFMDMQRR 352
Query: 107 KKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166
L P+ V VLKAC +E G+Q+H L+ K + + +LI Y
Sbjct: 353 G----LEPSPSTFSV-VLKACSAAKTLEYGRQIHALICKNNFQSDEFIGSALIELYALMG 407
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
ED F+ + + WT+ I + + F+ F+++ I+ YT S ++
Sbjct: 408 STEDGMQCFASTSKQDIASWTSMIDCHVQNEQLESAFDLFRQLFSSHIRPEEYTVSLMMS 467
Query: 227 ACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
AC + G Q+ +K G+++ V+ + MY K + A +VF + V ++
Sbjct: 468 ACADFAALSS-GEQIQGYAIKSGIDAFTSVKTSSISMYAKSGNMPLANQVF-IEVQNPDV 525
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
A+++AM+ ++G EA MK GI+ + + IAC
Sbjct: 526 ATYSAMISSLAQHGSANEALNIFESMKTHGIKPNQQAFLGVLIAC 570
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 92/197 (46%), Gaps = 2/197 (1%)
Query: 135 LGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNC 194
LGK HG + K + + L +L+N Y K R L A +F ++ N + + + I
Sbjct: 65 LGKLAHGHMIKSSLNPCLYLLNNLLNMYCKCRELGFARQLFDRMPERNIISFNSLISGYT 124
Query: 195 REGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDE 254
+ G + Q F E +K + +T++ L CG D + G +H +V GL
Sbjct: 125 QMGFYEQAMELFLEAREANLKLDKFTYAGALGFCGE-RCDLDLGELLHGLVVVNGLSQQV 183
Query: 255 YVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKA 314
++ L+DMY KC L A +F+ D+++ SWN+++ GY+R G E L M
Sbjct: 184 FLINVLIDMYSKCGKLDQAMSLFDR-CDERDQVSWNSLISGYVRVGAAEEPLNLLAKMHR 242
Query: 315 SGIQIQESLINDLRIAC 331
G+ + + + AC
Sbjct: 243 DGLNLTTYALGSVLKAC 259
>sp|Q9FK33|PP427_ARATH Pentatricopeptide repeat-containing protein At5g50390,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H58 PE=2
SV=1
Length = 701
Score = 124 bits (311), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 82/275 (29%), Positives = 132/275 (48%), Gaps = 7/275 (2%)
Query: 43 KPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAE 102
+P +NR+LLMHV CG + AR+LFDE+P R+ S+ +I G+V+ +Y E LF
Sbjct: 155 EPEQYMMNRILLMHVKCGMIIDARRLFDEIPERNLYSYYSIISGFVNFGNYVEAFELFKM 214
Query: 103 MMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFY 162
M + F +L+A ++ +GKQ+H KLG N ++ LI+ Y
Sbjct: 215 MWEELSDCETHTF-----AVMLRASAGLGSIYVGKQLHVCALKLGVVDNTFVSCGLIDMY 269
Query: 163 GKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFS 222
K +EDA F + TV W I G+ + +M + + +T S
Sbjct: 270 SKCGDIEDARCAFECMPEKTTVAWNNVIAGYALHGYSEEALCLLYDMRDSGVSIDQFTLS 329
Query: 223 SVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282
+++ + +Q HA++++ G ES+ LVD Y K + A VF+ +
Sbjct: 330 IMIRISTKLAKL-ELTKQAHASLIRNGFESEIVANTALVDFYSKWGRVDTARYVFDKL-P 387
Query: 283 KKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGI 317
+KNI SWNA++ GY +G +A K M A+ +
Sbjct: 388 RKNIISWNALMGGYANHGRGTDAVKLFEKMIAANV 422
Score = 89.4 bits (220), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 102/199 (51%), Gaps = 2/199 (1%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
+++AC+ ++ K+V+G + G + ++ + K + DA +F ++ N
Sbjct: 129 LVEACIRLKSIRCVKRVYGFMMSNGFEPEQYMMNRILLMHVKCGMIIDARRLFDEIPERN 188
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
+ + I G++ + F FK M E ++TF+ +L+A G+ G+Q+H
Sbjct: 189 LYSYYSIISGFVNFGNYVEAFELFKMMWEELSDCETHTFAVMLRASAGLGSI-YVGKQLH 247
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
+K+G+ + +V CGL+DMY KC + DA FE + +K +A WN ++ GY +G
Sbjct: 248 VCALKLGVVDNTFVSCGLIDMYSKCGDIEDARCAFECMPEKTTVA-WNNVIAGYALHGYS 306
Query: 303 VEATKFLYLMKASGIQIQE 321
EA LY M+ SG+ I +
Sbjct: 307 EEALCLLYDMRDSGVSIDQ 325
Score = 75.9 bits (185), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 61/245 (24%), Positives = 110/245 (44%), Gaps = 11/245 (4%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ CG ++ AR F+ MP + +W +I GY +E + L +M R G
Sbjct: 265 LIDMYSKCGDIEDARCAFECMPEKTTVAWNNVIAGYALHGYSEEALCLLYDM--RDSGVS 322
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+ F I++ + +EL KQ H L + G I +L++FY K+ ++ A
Sbjct: 323 IDQFTLSIMI---RISTKLAKLELTKQAHASLIRNGFESEIVANTALVDFYSKWGRVDTA 379
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG-- 229
+VF +L R N + W A + G F++M + N TF +VL AC
Sbjct: 380 RYVFDKLPRKNIISWNALMGGYANHGRGTDAVKLFEKMIAANVAPNHVTFLAVLSACAYS 439
Query: 230 GVDDDGNCGRQMHANIVKI-GLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
G+ + G ++ ++ ++ G++ ++++ G+ LL +A K +
Sbjct: 440 GLSEQ---GWEIFLSMSEVHGIKPRAMHYACMIELLGRDGLLDEAIAFIRRAPLKTTVNM 496
Query: 289 WNAML 293
W A+L
Sbjct: 497 WAALL 501
>sp|Q9LND4|PPR14_ARATH Pentatricopeptide repeat-containing protein At1g06140,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E61 PE=2
SV=1
Length = 558
Score = 124 bits (310), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 81/282 (28%), Positives = 147/282 (52%), Gaps = 8/282 (2%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+ G +++A+++FDE+P+R+ W V++ GY+ + E LF M R G
Sbjct: 150 LVEMYAQLGTMESAQKVFDEIPVRNSVLWGVLMKGYLKYSKDPEVFRLFCLM--RDTG-- 205
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLG-SSRNISLTGSLINFYGKFRCLED 170
L A ++C++KAC ++GK VHG+ + ++ L S+I+ Y K R L++
Sbjct: 206 -LALDALTLICLVKACGNVFAGKVGKCVHGVSIRRSFIDQSDYLQASIIDMYVKCRLLDN 264
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
A +F N V+WT I + + F+ F++M RE I N T +++L +C
Sbjct: 265 ARKLFETSVDRNVVMWTTLISGFAKCERAVEAFDLFRQMLRESILPNQCTLAAILVSCSS 324
Query: 231 VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWN 290
+ + G+ +H +++ G+E D +DMY +C ++ A VF+++ ++N+ SW+
Sbjct: 325 LGSLRH-GKSVHGYMIRNGIEMDAVNFTSFIDMYARCGNIQMARTVFDMM-PERNVISWS 382
Query: 291 AMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+M+ + NGL+ EA + MK+ + L ACS
Sbjct: 383 SMINAFGINGLFEEALDCFHKMKSQNVVPNSVTFVSLLSACS 424
Score = 106 bits (264), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 76/286 (26%), Positives = 139/286 (48%), Gaps = 12/286 (4%)
Query: 56 HVSCGQLDTARQLFDEMPL--RDFNSWAVMIVGYVDVAD--YQECITLFAEMMKRKKGHM 111
++ +LD A F+ +P R+ +SW ++ GY Y + + L+ M + G
Sbjct: 49 YIQSNRLDFATSSFNRIPCWKRNRHSWNTILSGYSKSKTCCYSDVLLLYNRMRRHCDG-- 106
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
++ +V +KACV +E G +HGL K G ++ + SL+ Y + +E A
Sbjct: 107 ---VDSFNLVFAIKACVGLGLLENGILIHGLAMKNGLDKDDYVAPSLVEMYAQLGTMESA 163
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
VF ++ N+V+W + + +VF F M + ++ T ++KACG V
Sbjct: 164 QKVFDEIPVRNSVLWGVLMKGYLKYSKDPEVFRLFCLMRDTGLALDALTLICLVKACGNV 223
Query: 232 DDDGNCGRQMHA-NIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWN 290
G G+ +H +I + ++ +Y+Q ++DMY KCRLL +A ++FE VD +N+ W
Sbjct: 224 -FAGKVGKCVHGVSIRRSFIDQSDYLQASIIDMYVKCRLLDNARKLFETSVD-RNVVMWT 281
Query: 291 AMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
++ G+ + VEA M I + + + ++CSS+ +
Sbjct: 282 TLISGFAKCERAVEAFDLFRQMLRESILPNQCTLAAILVSCSSLGS 327
Score = 85.1 bits (209), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 106/240 (44%), Gaps = 7/240 (2%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+V C LD AR+LF+ R+ W +I G+ E LF +M++ +
Sbjct: 255 MYVKCRLLDNARKLFETSVDRNVVMWTTLISGFAKCERAVEAFDLFRQMLRES------I 308
Query: 115 FPAW-IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADF 173
P + +L +C ++ GK VHG + + G + S I+ Y + ++ A
Sbjct: 309 LPNQCTLAAILVSCSSLGSLRHGKSVHGYMIRNGIEMDAVNFTSFIDMYARCGNIQMART 368
Query: 174 VFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDD 233
VF + N + W++ I G F + + F +M + + NS TF S+L AC +
Sbjct: 369 VFDMMPERNVISWSSMINAFGINGLFEEALDCFHKMKSQNVVPNSVTFVSLLSACSHSGN 428
Query: 234 DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
+Q + G+ +E +VD+ G+ + +A+ + + K ++W A+L
Sbjct: 429 VKEGWKQFESMTRDYGVVPEEEHYACMVDLLGRAGEIGEAKSFIDNMPVKPMASAWGALL 488
Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 93/207 (44%), Gaps = 6/207 (2%)
Query: 137 KQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK--RHNTVVWTAKIVNNC 194
+QVH + G + L SL N Y + L+ A F+++ + N W +
Sbjct: 24 QQVHAKVIIHGFEDEVVLGSSLTNAYIQSNRLDFATSSFNRIPCWKRNRHSWNTILSGYS 83
Query: 195 REGH--FHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLES 252
+ + V + M R +S+ +KAC G+ N G +H +K GL+
Sbjct: 84 KSKTCCYSDVLLLYNRMRRHCDGVDSFNLVFAIKACVGLGLLEN-GILIHGLAMKNGLDK 142
Query: 253 DEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLM 312
D+YV LV+MY + + A++VF+ I +N W ++ GY++ E + LM
Sbjct: 143 DDYVAPSLVEMYAQLGTMESAQKVFDEI-PVRNSVLWGVLMKGYLKYSKDPEVFRLFCLM 201
Query: 313 KASGIQIQESLINDLRIACSSISASKI 339
+ +G+ + + L AC ++ A K+
Sbjct: 202 RDTGLALDALTLICLVKACGNVFAGKV 228
>sp|Q9LSL8|PP446_ARATH Pentatricopeptide repeat-containing protein At5g65570
OS=Arabidopsis thaliana GN=PCMP-H47 PE=2 SV=1
Length = 738
Score = 123 bits (308), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 84/294 (28%), Positives = 151/294 (51%), Gaps = 12/294 (4%)
Query: 9 TTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQL 68
TT ++ L+++C ++ +G + H+ K + P + ++L+ + CG +D ARQ+
Sbjct: 64 TTHNFSQLLRQCIDERSISGIKTIQAHMLK--SGFPAEISGSKLVDASLKCGDIDYARQV 121
Query: 69 FDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCVLKAC 127
FD M R +W +I + +E + ++ M+ V P + + V KA
Sbjct: 122 FDGMSERHIVTWNSLIAYLIKHRRSKEAVEMYRLMITNN------VLPDEYTLSSVFKAF 175
Query: 128 VCTMNMELGKQVHGLLFKLG-SSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVW 186
+ ++ HGL LG N+ + +L++ Y KF +A V +++ + V+
Sbjct: 176 SDLSLEKEAQRSHGLAVILGLEVSNVFVGSALVDMYVKFGKTREAKLVLDRVEEKDVVLI 235
Query: 187 TAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIV 246
TA IV ++G + F+ M E+++ N YT++SVL +CG + D GN G+ +H +V
Sbjct: 236 TALIVGYSQKGEDTEAVKAFQSMLVEKVQPNEYTYASVLISCGNLKDIGN-GKLIHGLMV 294
Query: 247 KIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
K G ES Q L+ MY +C L+ D+ RVF+ I + N SW +++ G ++NG
Sbjct: 295 KSGFESALASQTSLLTMYLRCSLVDDSLRVFKCI-EYPNQVSWTSLISGLVQNG 347
Score = 118 bits (296), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 82/283 (28%), Positives = 137/283 (48%), Gaps = 9/283 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ M+V G+ A+ + D + +D +IVGY + E + F M+ K
Sbjct: 207 LVDMYVKFGKTREAKLVLDRVEEKDVVLITALIVGYSQKGEDTEAVKAFQSMLVEK---- 262
Query: 112 LLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
V P + VL +C ++ GK +HGL+ K G ++ SL+ Y + ++D
Sbjct: 263 --VQPNEYTYASVLISCGNLKDIGNGKLIHGLMVKSGFESALASQTSLLTMYLRCSLVDD 320
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
+ VF ++ N V WT+ I + G +F++M R+ IK NS+T SS L+ C
Sbjct: 321 SLRVFKCIEYPNQVSWTSLISGLVQNGREEMALIEFRKMMRDSIKPNSFTLSSALRGCSN 380
Query: 231 VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWN 290
+ GRQ+H + K G + D+Y GL+D+YGKC A VF+ + + ++ S N
Sbjct: 381 LAMFEE-GRQIHGIVTKYGFDRDKYAGSGLIDLYGKCGCSDMARLVFDTL-SEVDVISLN 438
Query: 291 AMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSS 333
M+ Y +NG EA M G+Q + + + +AC++
Sbjct: 439 TMIYSYAQNGFGREALDLFERMINLGLQPNDVTVLSVLLACNN 481
>sp|Q9FXA9|PPR83_ARATH Putative pentatricopeptide repeat-containing protein At1g56570
OS=Arabidopsis thaliana GN=PCMP-E64 PE=3 SV=1
Length = 611
Score = 122 bits (307), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 73/301 (24%), Positives = 151/301 (50%), Gaps = 8/301 (2%)
Query: 32 LLNHIRKRVNIKPTLLFLNRLLLMHVSCG-QLDTARQLFDEMPLRDFNSWAVMIVGYVDV 90
L++ + ++ ++ +L N ++ M+ +C ++ A +F ++ +++ +W +I G+ +
Sbjct: 132 LVHGVVVKLGMEGSLYVDNAMMNMYATCSVTMEAACLIFRDIKVKNDVTWTTLITGFTHL 191
Query: 91 ADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSR 150
D + ++ +M+ V P I + V +A ++ GKQ+H + K G
Sbjct: 192 GDGIGGLKMYKQMLLENAE----VTPYCITIAV-RASASIDSVTTGKQIHASVIKRGFQS 246
Query: 151 NISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMG 210
N+ + S+++ Y + L +A F +++ + + W +++ + F+
Sbjct: 247 NLPVMNSILDLYCRCGYLSEAKHYFHEMEDKDLITWNT-LISELERSDSSEALLMFQRFE 305
Query: 211 RERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLL 270
+ N YTF+S++ AC + NCG+Q+H I + G + + L+DMY KC +
Sbjct: 306 SQGFVPNCYTFTSLVAACANIAAL-NCGQQLHGRIFRRGFNKNVELANALIDMYAKCGNI 364
Query: 271 RDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIA 330
D++RVF IVD++N+ SW +M++GY +G EA + M +SGI+ + + A
Sbjct: 365 PDSQRVFGEIVDRRNLVSWTSMMIGYGSHGYGAEAVELFDKMVSSGIRPDRIVFMAVLSA 424
Query: 331 C 331
C
Sbjct: 425 C 425
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/291 (26%), Positives = 132/291 (45%), Gaps = 9/291 (3%)
Query: 47 LFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR 106
+ L++ + G ++ AR LFDEMP RD +W MI GY F EM+K+
Sbjct: 46 ILATNLIVSYFEKGLVEEARSLFDEMPDRDVVAWTAMITGYASSNYNARAWECFHEMVKQ 105
Query: 107 KKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166
+ + VLK+C + G VHG++ KLG ++ + +++N Y
Sbjct: 106 GTSP-----NEFTLSSVLKSCRNMKVLAYGALVHGVVVKLGMEGSLYVDNAMMNMYATCS 160
Query: 167 -CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
+E A +F +K N V WT I G +K+M E + Y + +
Sbjct: 161 VTMEAACLIFRDIKVKNDVTWTTLITGFTHLGDGIGGLKMYKQMLLENAEVTPYCITIAV 220
Query: 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
+A +D G+Q+HA+++K G +S+ V ++D+Y +C L +A+ F + D K+
Sbjct: 221 RASASIDSV-TTGKQIHASVIKRGFQSNLPVMNSILDLYCRCGYLSEAKHYFHEMED-KD 278
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+ +WN L+ + EA ++ G L AC++I+A
Sbjct: 279 LITWNT-LISELERSDSSEALLMFQRFESQGFVPNCYTFTSLVAACANIAA 328
Score = 89.4 bits (220), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 120/254 (47%), Gaps = 11/254 (4%)
Query: 43 KPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAE 102
+ L +N +L ++ CG L A+ F EM +D +W +I ++ +D E + +F
Sbjct: 245 QSNLPVMNSILDLYCRCGYLSEAKHYFHEMEDKDLITWNTLI-SELERSDSSEALLMFQR 303
Query: 103 MMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFY 162
+ V + ++ AC + G+Q+HG +F+ G ++N+ L +LI+ Y
Sbjct: 304 FESQG-----FVPNCYTFTSLVAACANIAALNCGQQLHGRIFRRGFNKNVELANALIDMY 358
Query: 163 GKFRCLEDADFVFSQL-KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTF 221
K + D+ VF ++ R N V WT+ ++ G+ + F +M I+ + F
Sbjct: 359 AKCGNIPDSQRVFGEIVDRRNLVSWTSMMIGYGSHGYGAEAVELFDKMVSSGIRPDRIVF 418
Query: 222 SSVLKAC--GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFEL 279
+VL AC G+ + G + + + G+ D + +VD+ G+ + +A + E
Sbjct: 419 MAVLSACRHAGLVEKGL--KYFNVMESEYGINPDRDIYNCVVDLLGRAGKIGEAYELVER 476
Query: 280 IVDKKNIASWNAML 293
+ K + ++W A+L
Sbjct: 477 MPFKPDESTWGAIL 490
>sp|Q9C507|PP111_ARATH Putative pentatricopeptide repeat-containing protein At1g69350,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E66 PE=3
SV=1
Length = 787
Score = 122 bits (307), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 89/303 (29%), Positives = 150/303 (49%), Gaps = 15/303 (4%)
Query: 37 RKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQEC 96
RK ++ TL N LL M+ CG L ++ ++F+++ ++ SW MI Y ++
Sbjct: 230 RKMFDLDETLC--NSLLTMYSKCGDLLSSERIFEKIAKKNAVSWTAMISSYNRGEFSEKA 287
Query: 97 ITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNI-SLT 155
+ F+EM+K L+ + VL +C + GK VHG + N SL+
Sbjct: 288 LRSFSEMIKSGIEPNLVT-----LYSVLSSCGLIGLIREGKSVHGFAVRRELDPNYESLS 342
Query: 156 GSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIK 215
+L+ Y + L D + V + N V W + I G Q F++M +RIK
Sbjct: 343 LALVELYAECGKLSDCETVLRVVSDRNIVAWNSLISLYAHRGMVIQALGLFRQMVTQRIK 402
Query: 216 KNSYTFSSVLKACGGVDDDG--NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDA 273
+++T +S + AC ++ G G+Q+H ++++ + SDE+VQ L+DMY K + A
Sbjct: 403 PDAFTLASSISAC---ENAGLVPLGKQIHGHVIRTDV-SDEFVQNSLIDMYSKSGSVDSA 458
Query: 274 ERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSS 333
VF I +++ +WN+ML G+ +NG VEA M S +++ E + ACSS
Sbjct: 459 STVFNQI-KHRSVVTWNSMLCGFSQNGNSVEAISLFDYMYHSYLEMNEVTFLAVIQACSS 517
Query: 334 ISA 336
I +
Sbjct: 518 IGS 520
Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/289 (26%), Positives = 139/289 (48%), Gaps = 20/289 (6%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL M+ G L A ++FD MP+RD +W+ ++ ++ + + + +F M+
Sbjct: 142 LLCMYGQTGNLSDAEKVFDGMPVRDLVAWSTLVSSCLENGEVVKALRMFKCMVDDG---- 197
Query: 112 LLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
V P A ++ V++ C + + + VHG + + + +L SL+ Y K L
Sbjct: 198 --VEPDAVTMISVVEGCAELGCLRIARSVHGQITRKMFDLDETLCNSLLTMYSKCGDLLS 255
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG- 229
++ +F ++ + N V WTA I + R + F EM + I+ N T SVL +CG
Sbjct: 256 SERIFEKIAKKNAVSWTAMISSYNRGEFSEKALRSFSEMIKSGIEPNLVTLYSVLSSCGL 315
Query: 230 -GVDDDGNCGRQMHANIVKIGLESD-EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
G+ + G+ +H V+ L+ + E + LV++Y +C L D E V ++ D +NI
Sbjct: 316 IGLIRE---GKSVHGFAVRRELDPNYESLSLALVELYAECGKLSDCETVLRVVSD-RNIV 371
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+WN+++ Y G+ ++A M + + + D SSISA
Sbjct: 372 AWNSLISLYAHRGMVIQALGLFRQM------VTQRIKPDAFTLASSISA 414
Score = 85.5 bits (210), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 69/281 (24%), Positives = 130/281 (46%), Gaps = 11/281 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
L+ ++ CG+L + + R+ +W +I Y + + LF +M+ ++
Sbjct: 345 LVELYAECGKLSDCETVLRVVSDRNIVAWNSLISLYAHRGMVIQALGLFRQMVTQR---- 400
Query: 112 LLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
+ P A+ + + AC + LGKQ+HG + + S + SLI+ Y K ++
Sbjct: 401 --IKPDAFTLASSISACENAGLVPLGKQIHGHVIRTDVSDEF-VQNSLIDMYSKSGSVDS 457
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
A VF+Q+K + V W + + + G+ + + F M ++ N TF +V++AC
Sbjct: 458 ASTVFNQIKHRSVVTWNSMLCGFSQNGNSVEAISLFDYMYHSYLEMNEVTFLAVIQACSS 517
Query: 231 VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWN 290
+ G+ +H ++ GL+ D + L+DMY KC L AE VF + + ++ +
Sbjct: 518 IGSLEK-GKWVHHKLIISGLK-DLFTDTALIDMYAKCGDLNAAETVFRAMSSRSIVSW-S 574
Query: 291 AMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
+M+ Y +G A M SG + E + ++ AC
Sbjct: 575 SMINAYGMHGRIGSAISTFNQMVESGTKPNEVVFMNVLSAC 615
Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 115/250 (46%), Gaps = 15/250 (6%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ G +D+A +F+++ R +W M+ G+ + E I+LF M
Sbjct: 443 NSLIDMYSKSGSVDSASTVFNQIKHRSVVTWNSMLCGFSQNGNSVEAISLFDYMY----- 497
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
H L + V++AC ++E GK VH L G +++ +LI+ Y K L
Sbjct: 498 HSYLEMNEVTFLAVIQACSSIGSLEKGKWVHHKLIISGL-KDLFTDTALIDMYAKCGDLN 556
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A+ VF + + V W++ I G + F +M K N F +VL ACG
Sbjct: 557 AAETVFRAMSSRSIVSWSSMINAYGMHGRIGSAISTFNQMVESGTKPNEVVFMNVLSACG 616
Query: 230 --GVDDDGNCGRQMHANIVK-IGLESD-EYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
G ++G + + N++K G+ + E+ C +D+ + L++A R + + +
Sbjct: 617 HSGSVEEG----KYYFNLMKSFGVSPNSEHFAC-FIDLLSRSGDLKEAYRTIKEMPFLAD 671
Query: 286 IASWNAMLVG 295
+ W +++ G
Sbjct: 672 ASVWGSLVNG 681
Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 88/188 (46%), Gaps = 2/188 (1%)
Query: 132 NMELGKQVHGLLFKLGSSRNISLTGS-LINFYGKFRCLEDADFVFSQLKRHNTVVWTAKI 190
++ L Q+H L G R L + LI Y + + VF ++ ++ I
Sbjct: 13 SLRLVSQLHAHLLVTGRLRRDPLPVTKLIESYAFMGSPDSSRLVFEAFPYPDSFMYGVLI 72
Query: 191 VNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGL 250
N + + + E + + + F SVL+AC G + + G ++H I+K G+
Sbjct: 73 KCNVWCHLLDAAIDLYHRLVSETTQISKFVFPSVLRACAGSREHLSVGGKVHGRIIKGGV 132
Query: 251 ESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLY 310
+ D ++ L+ MYG+ L DAE+VF+ + +++ +W+ ++ + NG V+A +
Sbjct: 133 DDDAVIETSLLCMYGQTGNLSDAEKVFDGM-PVRDLVAWSTLVSSCLENGEVVKALRMFK 191
Query: 311 LMKASGIQ 318
M G++
Sbjct: 192 CMVDDGVE 199
>sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650
OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2
Length = 1064
Score = 122 bits (305), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 80/274 (29%), Positives = 142/274 (51%), Gaps = 16/274 (5%)
Query: 29 AFELLNHIRKRV---NIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIV 85
AF+++ I R+ ++ + + N L+ ++ G +D AR++FD + L+D +SW MI
Sbjct: 202 AFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMIS 261
Query: 86 GYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLF 144
G E I LF +M ++L + P + VL AC ++E+G+Q+HGL+
Sbjct: 262 GLSKNECEAEAIRLFCDM------YVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVL 315
Query: 145 KLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFN 204
KLG S + + +L++ Y L A+ +FS + + + V + I + G+ +
Sbjct: 316 KLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAME 375
Query: 205 DFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC--GRQMHANIVKIGLESDEYVQCGLVD 262
FK M + ++ +S T +S++ AC DG G+Q+HA K+G S+ ++ L++
Sbjct: 376 LFKRMHLDGLEPDSNTLASLVVACSA---DGTLFRGQQLHAYTTKLGFASNNKIEGALLN 432
Query: 263 MYGKCRLLRDAERVFELIVDKKNIASWNAMLVGY 296
+Y KC + A F L + +N+ WN MLV Y
Sbjct: 433 LYAKCADIETALDYF-LETEVENVVLWNVMLVAY 465
Score = 121 bits (304), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 88/325 (27%), Positives = 144/325 (44%), Gaps = 14/325 (4%)
Query: 13 YTCLIKECTFQKDSAGAFELLNHIRKRV---NIKPTLLFLNRLLLMHVSCGQLDTARQLF 69
Y ++K C G EL I ++ N + + L+ M+ G+LDTA +
Sbjct: 493 YPSILKTCI----RLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDIL 548
Query: 70 DEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVC 129
+D SW MI GY + +T F +M+ R + + + AC
Sbjct: 549 IRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRG-----IRSDEVGLTNAVSACAG 603
Query: 130 TMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAK 189
++ G+Q+H G S ++ +L+ Y + +E++ F Q + + + W A
Sbjct: 604 LQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNAL 663
Query: 190 IVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIG 249
+ + G+ + F M RE I N++TF S +KA + G+Q+HA I K G
Sbjct: 664 VSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQ-GKQVHAVITKTG 722
Query: 250 LESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFL 309
+S+ V L+ MY KC + DAE+ F L V KN SWNA++ Y ++G EA
Sbjct: 723 YDSETEVCNALISMYAKCGSISDAEKQF-LEVSTKNEVSWNAIINAYSKHGFGSEALDSF 781
Query: 310 YLMKASGIQIQESLINDLRIACSSI 334
M S ++ + + ACS I
Sbjct: 782 DQMIHSNVRPNHVTLVGVLSACSHI 806
Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 79/290 (27%), Positives = 131/290 (45%), Gaps = 9/290 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ ++ G L +A +F M RD ++ +I G ++ + LF M
Sbjct: 327 NALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRM------ 380
Query: 110 HMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
H+ + P + + ++ AC + G+Q+H KLG + N + G+L+N Y K +
Sbjct: 381 HLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADI 440
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
E A F + + N V+W +V F F++M E I N YT+ S+LK C
Sbjct: 441 ETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTC 500
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
+ D G Q+H+ I+K + + YV L+DMY K L A + + K++ S
Sbjct: 501 IRLGD-LELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDIL-IRFAGKDVVS 558
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASK 338
W M+ GY + +A M GI+ E + + AC+ + A K
Sbjct: 559 WTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALK 608
Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/266 (25%), Positives = 119/266 (44%), Gaps = 7/266 (2%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL ++ C ++TA F E + + W VM+V Y + D + +F +M +
Sbjct: 430 LLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPN 489
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+P+ +LK C+ ++ELG+Q+H + K N + LI+ Y K L+ A
Sbjct: 490 QYTYPS-----ILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTA 544
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
+ + + V WT I + + F++M I+ + ++ + AC G+
Sbjct: 545 WDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGL 604
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
G+Q+HA G SD Q LV +Y +C + ++ FE NIA WNA
Sbjct: 605 QALKE-GQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIA-WNA 662
Query: 292 MLVGYIRNGLYVEATKFLYLMKASGI 317
++ G+ ++G EA + M GI
Sbjct: 663 LVSGFQQSGNNEEALRVFVRMNREGI 688
Score = 87.8 bits (216), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 112/250 (44%), Gaps = 9/250 (3%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L F N L+ ++ CG+++ + F++ D +W ++ G+ + +E + +F M +
Sbjct: 626 LPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNR 685
Query: 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165
+ F + +KA T NM+ GKQVH ++ K G + +LI+ Y K
Sbjct: 686 EGIDNNNFTFGS-----AVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKC 740
Query: 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225
+ DA+ F ++ N V W A I + G + + F +M ++ N T VL
Sbjct: 741 GSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVL 800
Query: 226 KACG--GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
AC G+ D G + + + + + YV C +VDM + LL A+ + + K
Sbjct: 801 SACSHIGLVDKGIAYFESMNSEYGLSPKPEHYV-C-VVDMLTRAGLLSRAKEFIQEMPIK 858
Query: 284 KNIASWNAML 293
+ W +L
Sbjct: 859 PDALVWRTLL 868
Score = 82.4 bits (202), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 75/279 (26%), Positives = 123/279 (44%), Gaps = 16/279 (5%)
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI 119
G L A ++FDEMP R +W MI E LF M+ F
Sbjct: 134 GDLYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSG-- 191
Query: 120 IVCVLKACV-CTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL 178
VL+AC ++ ++ +Q+H + G + + LI+ Y + ++ A VF L
Sbjct: 192 ---VLEACRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGL 248
Query: 179 KRHNTVVWTAKIV----NNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDD 234
+ + W A I N C E ++F D +G I Y FSSVL AC + +
Sbjct: 249 RLKDHSSWVAMISGLSKNEC-EAEAIRLFCDMYVLG---IMPTPYAFSSVLSACKKI-ES 303
Query: 235 GNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLV 294
G Q+H ++K+G SD YV LV +Y L AE +F + +++ ++N ++
Sbjct: 304 LEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNM-SQRDAVTYNTLIN 362
Query: 295 GYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSS 333
G + G +A + M G++ + + L +ACS+
Sbjct: 363 GLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSA 401
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 98/218 (44%), Gaps = 2/218 (0%)
Query: 123 VLKACVCTM-NMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH 181
+L+ C+ T +++ G+++H + KLG N L+ L +FY L A VF ++
Sbjct: 90 LLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPER 149
Query: 182 NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQM 241
W I +VF F M E + N TFS VL+AC G + Q+
Sbjct: 150 TIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQI 209
Query: 242 HANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGL 301
HA I+ GL V L+D+Y + + A RVF+ + K+ +SW AM+ G +N
Sbjct: 210 HARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGL-RLKDHSSWVAMISGLSKNEC 268
Query: 302 YVEATKFLYLMKASGIQIQESLINDLRIACSSISASKI 339
EA + M GI + + AC I + +I
Sbjct: 269 EAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEI 306
Score = 40.4 bits (93), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 214 IKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDA 273
I+ N T +L+ C + + GR++H+ I+K+GL+S+ + L D Y L A
Sbjct: 80 IRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGA 139
Query: 274 ERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
+VF+ + + + I +WN M+ L E M + + E + + AC
Sbjct: 140 FKVFDEMPE-RTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEAC 196
>sp|Q9CA56|PP121_ARATH Pentatricopeptide repeat-containing protein At1g74600,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-E69 PE=2
SV=1
Length = 895
Score = 122 bits (305), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 79/283 (27%), Positives = 135/283 (47%), Gaps = 7/283 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+ L ++ CG L+ + +LF +P +D WA MI G+ + +E I LF+EM+
Sbjct: 489 SSLFTLYSKCGSLEESYKLFQGIPFKDNACWASMISGFNEYGYLREAIGLFSEMLDDGTS 548
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ VL C ++ GK++HG + G + + L +L+N Y K L+
Sbjct: 549 P-----DESTLAAVLTVCSSHPSLPRGKEIHGYTLRAGIDKGMDLGSALVNMYSKCGSLK 603
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
A V+ +L + V ++ I + G F F++M +S+ SS+LKA
Sbjct: 604 LARQVYDRLPELDPVSCSSLISGYSQHGLIQDGFLLFRDMVMSGFTMDSFAISSILKA-A 662
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
+ D+ + G Q+HA I KIGL ++ V L+ MY K + D + F I + ++ +W
Sbjct: 663 ALSDESSLGAQVHAYITKIGLCTEPSVGSSLLTMYSKFGSIDDCCKAFSQI-NGPDLIAW 721
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
A++ Y ++G EA + LMK G + + + ACS
Sbjct: 722 TALIASYAQHGKANEALQVYNLMKEKGFKPDKVTFVGVLSACS 764
Score = 105 bits (262), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 87/306 (28%), Positives = 136/306 (44%), Gaps = 12/306 (3%)
Query: 32 LLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVA 91
L H+ +R + + LL + + G + A +LFD +P D S +MI GY
Sbjct: 70 LQAHLLRRYLLPFDVFLTKSLLSWYSNSGSMADAAKLFDTIPQPDVVSCNIMISGYKQHR 129
Query: 92 DYQECITLFAEMMKRKKGHMLLVFPAWIIV--CVLKACVCTMNMELGKQVHGLLFKLGSS 149
++E + F++M L F A I V+ AC + V K+G
Sbjct: 130 LFEESLRFFSKMH-------FLGFEANEISYGSVISACSALQAPLFSELVCCHTIKMGYF 182
Query: 150 RNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEM 209
+ +LI+ + K EDA VF N W I R ++ VF+ F EM
Sbjct: 183 FYEVVESALIDVFSKNLRFEDAYKVFRDSLSANVYCWNTIIAGALRNQNYGAVFDLFHEM 242
Query: 210 GRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRL 269
K +SYT+SSVL AC ++ G+ + A ++K G E D +V +VD+Y KC
Sbjct: 243 CVGFQKPDSYTYSSVLAACASLEKL-RFGKVVQARVIKCGAE-DVFVCTAIVDLYAKCGH 300
Query: 270 LRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRI 329
+ +A VF I + ++ SW ML GY ++ A + M+ SG++I + +
Sbjct: 301 MAEAMEVFSRIPN-PSVVSWTVMLSGYTKSNDAFSALEIFKEMRHSGVEINNCTVTSVIS 359
Query: 330 ACSSIS 335
AC S
Sbjct: 360 ACGRPS 365
Score = 98.2 bits (243), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 69/259 (26%), Positives = 116/259 (44%), Gaps = 9/259 (3%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R I + + L+ M+ CG L ARQ++D +P D S + +I GY Q+
Sbjct: 579 RAGIDKGMDLGSALVNMYSKCGSLKLARQVYDRLPELDPVSCSSLISGYSQHGLIQDGFL 638
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
LF +M+ ++ I +LKA + LG QVH + K+G S+ SL
Sbjct: 639 LFRDMVMSG-----FTMDSFAISSILKAAALSDESSLGAQVHAYITKIGLCTEPSVGSSL 693
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
+ Y KF ++D FSQ+ + + WTA I + + G ++ + M + K +
Sbjct: 694 LTMYSKFGSIDDCCKAFSQINGPDLIAWTALIASYAQHGKANEALQVYNLMKEKGFKPDK 753
Query: 219 YTFSSVLKAC--GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERV 276
TF VL AC GG+ ++ +++ + G+E + +VD G+ LR+AE
Sbjct: 754 VTFVGVLSACSHGGLVEESYF--HLNSMVKDYGIEPENRHYVCMVDALGRSGRLREAESF 811
Query: 277 FELIVDKKNIASWNAMLVG 295
+ K + W +L
Sbjct: 812 INNMHIKPDALVWGTLLAA 830
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/282 (24%), Positives = 129/282 (45%), Gaps = 11/282 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMP-LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGH 110
L+ M+ G +D + Q+F+++ ++ N VMI + + I LF M++ +G
Sbjct: 392 LISMYSKSGDIDLSEQVFEDLDDIQRQNIVNVMITSFSQSKKPGKAIRLFTRMLQ--EGL 449
Query: 111 MLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
F VC L + + +N LGKQVHG K G ++++ SL Y K LE+
Sbjct: 450 RTDEFS----VCSLLSVLDCLN--LGKQVHGYTLKSGLVLDLTVGSSLFTLYSKCGSLEE 503
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230
+ +F + + W + I G+ + F EM + + T ++VL C
Sbjct: 504 SYKLFQGIPFKDNACWASMISGFNEYGYLREAIGLFSEMLDDGTSPDESTLAAVLTVCSS 563
Query: 231 VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWN 290
G+++H ++ G++ + LV+MY KC L+ A +V++ + + + S +
Sbjct: 564 HPSLPR-GKEIHGYTLRAGIDKGMDLGSALVNMYSKCGSLKLARQVYDRLPELDPV-SCS 621
Query: 291 AMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+++ GY ++GL + M SG + I+ + A +
Sbjct: 622 SLISGYSQHGLIQDGFLLFRDMVMSGFTMDSFAISSILKAAA 663
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/265 (24%), Positives = 117/265 (44%), Gaps = 15/265 (5%)
Query: 61 QLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEM-MKRKKGHMLLVFPAWI 119
+ + A ++F + + W +I G + +Y LF EM + +K ++
Sbjct: 200 RFEDAYKVFRDSLSANVYCWNTIIAGALRNQNYGAVFDLFHEMCVGFQKPD------SYT 253
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
VL AC + GK V + K G+ ++ + ++++ Y K + +A VFS++
Sbjct: 254 YSSVLAACASLEKLRFGKVVQARVIKCGA-EDVFVCTAIVDLYAKCGHMAEAMEVFSRIP 312
Query: 180 RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC-G 238
+ V WT + + FKEM ++ N+ T +SV+ ACG C
Sbjct: 313 NPSVVSWTVMLSGYTKSNDAFSALEIFKEMRHSGVEINNCTVTSVISACG--RPSMVCEA 370
Query: 239 RQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD--KKNIASWNAMLVGY 296
Q+HA + K G D V L+ MY K + +E+VFE + D ++NI N M+ +
Sbjct: 371 SQVHAWVFKSGFYLDSSVAAALISMYSKSGDIDLSEQVFEDLDDIQRQNIV--NVMITSF 428
Query: 297 IRNGLYVEATKFLYLMKASGIQIQE 321
++ +A + M G++ E
Sbjct: 429 SQSKKPGKAIRLFTRMLQEGLRTDE 453
Score = 37.0 bits (84), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 250 LESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFL 309
L D ++ L+ Y + DA ++F+ I + ++ S N M+ GY ++ L+ E+ +F
Sbjct: 80 LPFDVFLTKSLLSWYSNSGSMADAAKLFDTI-PQPDVVSCNIMISGYKQHRLFEESLRFF 138
Query: 310 YLMKASGIQIQESLINDLRIACSSISA 336
M G + E + ACS++ A
Sbjct: 139 SKMHFLGFEANEISYGSVISACSALQA 165
>sp|Q9LYV3|PP377_ARATH Putative pentatricopeptide repeat-containing protein At5g13230,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H89 PE=3
SV=1
Length = 822
Score = 122 bits (305), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 79/262 (30%), Positives = 130/262 (49%), Gaps = 7/262 (2%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL ++ G + A ++F+EMP D W+ MI + E + LF M +
Sbjct: 288 LLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNEAVDLFIRMRE-----A 342
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
+V + + +L C LG+Q+HGL+ K+G +I ++ +LI+ Y K ++ A
Sbjct: 343 FVVPNEFTLSSILNGCAIGKCSGLGEQLHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTA 402
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231
+F++L N V W IV G + F+ F+E R ++ TFSS L AC +
Sbjct: 403 VKLFAELSSKNEVSWNTVIVGYENLGEGGKAFSMFREALRNQVSVTEVTFSSALGACASL 462
Query: 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNA 291
+ G Q+H +K V L+DMY KC ++ A+ VF + + ++ASWNA
Sbjct: 463 -ASMDLGVQVHGLAIKTNNAKKVAVSNSLIDMYAKCGDIKFAQSVFNEM-ETIDVASWNA 520
Query: 292 MLVGYIRNGLYVEATKFLYLMK 313
++ GY +GL +A + L +MK
Sbjct: 521 LISGYSTHGLGRQALRILDIMK 542
Score = 99.4 bits (246), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 77/290 (26%), Positives = 136/290 (46%), Gaps = 19/290 (6%)
Query: 8 ITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQ 67
+++ + C I +C+ G E L+ + +V + N L+ ++ C ++DTA +
Sbjct: 351 LSSILNGCAIGKCS------GLGEQLHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTAVK 404
Query: 68 LFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKAC 127
LF E+ ++ SW +IVGY ++ + + ++F E ++ + + F + L AC
Sbjct: 405 LFAELSSKNEVSWNTVIVGYENLGEGGKAFSMFREALRNQVSVTEVTFSS-----ALGAC 459
Query: 128 VCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWT 187
+M+LG QVHGL K +++ ++++ SLI+ Y K ++ A VF++++ + W
Sbjct: 460 ASLASMDLGVQVHGLAIKTNNAKKVAVSNSLIDMYAKCGDIKFAQSVFNEMETIDVASWN 519
Query: 188 AKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC---GGVDDDGNCGRQMHAN 244
A I G Q M K N TF VL C G +D C M
Sbjct: 520 ALISGYSTHGLGRQALRILDIMKDRDCKPNGLTFLGVLSGCSNAGLIDQGQECFESM--- 576
Query: 245 IVKIGLES-DEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
I G+E E+ C +V + G+ L A ++ E I + ++ W AML
Sbjct: 577 IRDHGIEPCLEHYTC-MVRLLGRSGQLDKAMKLIEGIPYEPSVMIWRAML 625
Score = 88.2 bits (217), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 82/331 (24%), Positives = 141/331 (42%), Gaps = 12/331 (3%)
Query: 2 DNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQ 61
D++ + + Y +++ C + D A + I K+ + L N LL +V G
Sbjct: 41 DSIIPGLDSHAYGAMLRRCIQKNDPISAKAIHCDILKKGSCL-DLFATNILLNAYVKAGF 99
Query: 62 LDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIV 121
A LFDEMP R+ S+ + GY Q+ I L++ + ++GH L +
Sbjct: 100 DKDALNLFDEMPERNNVSFVTLAQGYA----CQDPIGLYSRL--HREGHEL---NPHVFT 150
Query: 122 CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH 181
LK V E+ +H + KLG N + +LIN Y ++ A VF +
Sbjct: 151 SFLKLFVSLDKAEICPWLHSPIVKLGYDSNAFVGAALINAYSVCGSVDSARTVFEGILCK 210
Query: 182 NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQM 241
+ VVW + G+F M N+YTF + LKA G+ + + +
Sbjct: 211 DIVVWAGIVSCYVENGYFEDSLKLLSCMRMAGFMPNNYTFDTALKASIGL-GAFDFAKGV 269
Query: 242 HANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGL 301
H I+K D V GL+ +Y + + DA +VF + K ++ W+ M+ + +NG
Sbjct: 270 HGQILKTCYVLDPRVGVGLLQLYTQLGDMSDAFKVFNEM-PKNDVVPWSFMIARFCQNGF 328
Query: 302 YVEATKFLYLMKASGIQIQESLINDLRIACS 332
EA M+ + + E ++ + C+
Sbjct: 329 CNEAVDLFIRMREAFVVPNEFTLSSILNGCA 359
>sp|P0C898|PP232_ARATH Putative pentatricopeptide repeat-containing protein At3g15130
OS=Arabidopsis thaliana GN=PCMP-H86 PE=3 SV=1
Length = 689
Score = 121 bits (304), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 81/279 (29%), Positives = 141/279 (50%), Gaps = 13/279 (4%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L+ N L+ M+ C + A ++FD MP R+ SW+ ++ G+V D + ++LF+EM +
Sbjct: 41 LITSNYLIDMYCKCREPLMAYKVFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEMGR 100
Query: 106 RKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
+ ++P + LKAC +E G Q+HG K+G + + SL++ Y K
Sbjct: 101 QG------IYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSK 154
Query: 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKK--NSYTFS 222
+ +A+ VF ++ + + W A I G+ + + F M IK+ + +T +
Sbjct: 155 CGRINEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLT 214
Query: 223 SVLKACGGVDDDGNCGRQMHANIVKIGLE--SDEYVQCGLVDMYGKCRLLRDAERVFELI 280
S+LKAC G+Q+H +V+ G S + LVD+Y KC L A + F+ I
Sbjct: 215 SLLKACSSTGMI-YAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQI 273
Query: 281 VDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQI 319
+K I SW+++++GY + G +VEA ++ QI
Sbjct: 274 KEKTMI-SWSSLILGYAQEGEFVEAMGLFKRLQELNSQI 311
Score = 114 bits (286), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 78/216 (36%), Positives = 112/216 (51%), Gaps = 4/216 (1%)
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
+V +L+ C + G QVH L K GS N+ + LI+ Y K R A VF +
Sbjct: 9 LVSILRVCTRKGLSDQGGQVHCYLLKSGSGLNLITSNYLIDMYCKCREPLMAYKVFDSMP 68
Query: 180 RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGR 239
N V W+A + + G + F EMGR+ I N +TFS+ LKACG ++ G
Sbjct: 69 ERNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNALEK-GL 127
Query: 240 QMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRN 299
Q+H +KIG E V LVDMY KC + +AE+VF IVD +++ SWNAM+ G++
Sbjct: 128 QIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVD-RSLISWNAMIAGFVHA 186
Query: 300 GLYVEATKFLYLMKASGIQ--IQESLINDLRIACSS 333
G +A +M+ + I+ E + L ACSS
Sbjct: 187 GYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSS 222
Score = 114 bits (286), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 86/290 (29%), Positives = 144/290 (49%), Gaps = 17/290 (5%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ CG+++ A ++F + R SW MI G+V + + F M ++
Sbjct: 146 NSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMM---QEA 202
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLG--SSRNISLTGSLINFYGKFRC 167
++ + + +LKAC T + GKQ+HG L + G + ++TGSL++ Y K
Sbjct: 203 NIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGY 262
Query: 168 LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227
L A F Q+K + W++ I+ +EG F + FK + + +S+ SS++
Sbjct: 263 LFSARKAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSSII-- 320
Query: 228 CGGVDDDGNC---GRQMHANIVKI--GLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282
GV D G+QM A VK+ GLE+ V +VDMY KC L+ +AE+ F +
Sbjct: 321 --GVFADFALLRQGKQMQALAVKLPSGLETS--VLNSVVDMYLKCGLVDEAEKCFAEM-Q 375
Query: 283 KKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
K++ SW ++ GY ++GL ++ + Y M I+ E + ACS
Sbjct: 376 LKDVISWTVVITGYGKHGLGKKSVRIFYEMLRHNIEPDEVCYLAVLSACS 425
Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 61/263 (23%), Positives = 126/263 (47%), Gaps = 15/263 (5%)
Query: 36 IRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQE 95
+R + + L+ ++V CG L +AR+ FD++ + SW+ +I+GY ++ E
Sbjct: 237 VRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIKEKTMISWSSLILGYAQEGEFVE 296
Query: 96 CITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLT 155
+ LF + + + F I+ V + GKQ+ L KL S S+
Sbjct: 297 AMGLFKRLQELNS--QIDSFALSSIIGVFADFAL---LRQGKQMQALAVKLPSGLETSVL 351
Query: 156 GSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIK 215
S+++ Y K +++A+ F++++ + + WT I + G + F EM R I+
Sbjct: 352 NSVVDMYLKCGLVDEAEKCFAEMQLKDVISWTVVITGYGKHGLGKKSVRIFYEMLRHNIE 411
Query: 216 KNSYTFSSVLKAC---GGVDDDGNCGRQMHANIVKI-GLESD-EYVQCGLVDMYGKCRLL 270
+ + +VL AC G + + G ++ + +++ G++ E+ C +VD+ G+ L
Sbjct: 412 PDEVCYLAVLSACSHSGMIKE----GEELFSKLLETHGIKPRVEHYAC-VVDLLGRAGRL 466
Query: 271 RDAERVFELIVDKKNIASWNAML 293
++A+ + + + K N+ W +L
Sbjct: 467 KEAKHLIDTMPIKPNVGIWQTLL 489
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 81/167 (48%), Gaps = 17/167 (10%)
Query: 49 LNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
LN ++ M++ CG +D A + F EM L+D SW V+I GY ++ + +F EM++
Sbjct: 351 LNSVVDMYLKCGLVDEAEKCFAEMQLKDVISWTVVITGYGKHGLGKKSVRIFYEMLRHN- 409
Query: 109 GHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKL-GSSRNISLTGSLINFYGKFR 166
+ P + + VL AC + ++ G+++ L + G + +++ G+
Sbjct: 410 -----IEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETHGIKPRVEHYACVVDLLGRAG 464
Query: 167 CLEDADFVFSQLK-RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRE 212
L++A + + + N +W +++ CR V D E+G+E
Sbjct: 465 RLKEAKHLIDTMPIKPNVGIWQT-LLSLCR------VHGDI-ELGKE 503
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 6/116 (5%)
Query: 223 SVLKACG--GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELI 280
S+L+ C G+ D G Q+H ++K G + L+DMY KCR A +VF+ +
Sbjct: 11 SILRVCTRKGLSDQGG---QVHCYLLKSGSGLNLITSNYLIDMYCKCREPLMAYKVFDSM 67
Query: 281 VDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
++ N+ SW+A++ G++ NG + M GI E + AC ++A
Sbjct: 68 PER-NVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNA 122
>sp|Q8S9M4|PP198_ARATH Pentatricopeptide repeat-containing protein At2g41080
OS=Arabidopsis thaliana GN=PCMP-H29 PE=2 SV=2
Length = 650
Score = 121 bits (304), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 87/292 (29%), Positives = 136/292 (46%), Gaps = 10/292 (3%)
Query: 43 KPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAE 102
K + N L+ +V G L AR++FDEMP R +W MI G + +E ++LF E
Sbjct: 107 KKNYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFRE 166
Query: 103 MMKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINF 161
M H L P + + V ++ +G+Q+HG K G ++ + SL +
Sbjct: 167 M------HGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHM 220
Query: 162 YGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTF 221
Y + L+D + V + N V W I+ N + G V +K M + N TF
Sbjct: 221 YMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITF 280
Query: 222 SSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIV 281
+VL +C + G G+Q+HA +KIG S V L+ MY KC L DA + F
Sbjct: 281 VTVLSSCSDLAIRGQ-GQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSERE 339
Query: 282 DKKNIASWNAMLVGYIRNGLYVEATKFLYLM-KASGIQIQESLINDLRIACS 332
D+ + W++M+ Y +G EA + M + + ++I E +L ACS
Sbjct: 340 DEDEVM-WSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACS 390
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 103/244 (42%), Gaps = 35/244 (14%)
Query: 124 LKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNT 183
+++C ++ GKQ+H LL G S + + L++ Y K A V+ ++++ N
Sbjct: 51 IQSCTTRQSLPSGKQLHCLLVVSGFSSDKFICNHLMSMYSKLGDFPSAVAVYGRMRKKNY 110
Query: 184 VVWTAKIVNNCREGHF---HQVFND----------------------------FKEMGRE 212
+ I R G +VF++ F+EM
Sbjct: 111 MSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREMHGL 170
Query: 213 RIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRD 272
+ YT SV G+ + G+Q+H +K GLE D V L MY + L+D
Sbjct: 171 GFSPDEYTLGSVFSGSAGLRSV-SIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQD 229
Query: 273 AERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLY-LMKASGIQIQESLINDLRIAC 331
E V + +N+ +WN +++G +NG E +LY +MK SG + + + +C
Sbjct: 230 GEIVIRSM-PVRNLVAWNTLIMGNAQNGC-PETVLYLYKMMKISGCRPNKITFVTVLSSC 287
Query: 332 SSIS 335
S ++
Sbjct: 288 SDLA 291
Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 112/252 (44%), Gaps = 12/252 (4%)
Query: 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105
L+ + L M++ G+L + MP+R+ +W +I+G + + L+ +MMK
Sbjct: 211 LVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLY-KMMK 269
Query: 106 RKKGHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164
+ P I V VL +C G+Q+H K+G+S +++ SLI+ Y K
Sbjct: 270 -----ISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSK 324
Query: 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRE-RIKKNSYTFSS 223
CL DA FS+ + + V+W++ I G + F M + ++ N F +
Sbjct: 325 CGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLN 384
Query: 224 VLKACG--GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIV 281
+L AC G+ D G M + K G + +VD+ G+ L AE + +
Sbjct: 385 LLYACSHSGLKDKGLELFDMM--VEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMP 442
Query: 282 DKKNIASWNAML 293
K +I W +L
Sbjct: 443 IKTDIVIWKTLL 454
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 66/152 (43%), Gaps = 6/152 (3%)
Query: 176 SQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDG 235
S + R +V I C +G+ + F F R I N+ F+ +++C
Sbjct: 6 SSVVRPLSVDPATAIATLCSKGNLREAFQRF----RLNIFTNTSLFTPFIQSCT-TRQSL 60
Query: 236 NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
G+Q+H +V G SD+++ L+ MY K A V+ + KKN S N ++ G
Sbjct: 61 PSGKQLHCLLVVSGFSSDKFICNHLMSMYSKLGDFPSAVAVYGRM-RKKNYMSSNILING 119
Query: 296 YIRNGLYVEATKFLYLMKASGIQIQESLINDL 327
Y+R G V A K M + ++I L
Sbjct: 120 YVRAGDLVNARKVFDEMPDRKLTTWNAMIAGL 151
>sp|Q9S7F4|PP206_ARATH Putative pentatricopeptide repeat-containing protein At2g01510
OS=Arabidopsis thaliana GN=PCMP-H36 PE=3 SV=1
Length = 825
Score = 121 bits (304), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 85/283 (30%), Positives = 135/283 (47%), Gaps = 7/283 (2%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N++L + ++ R LFDEMP DF S+ V+I Y Y+ + F EM + G
Sbjct: 289 NQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREM--QCMG 346
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
FP +L ++++G+Q+H + + + SL++ Y K E
Sbjct: 347 FDRRNFP---FATMLSIAANLSSLQMGRQLHCQALLATADSILHVGNSLVDMYAKCEMFE 403
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
+A+ +F L + TV WTA I ++G F +M ++ + TF++VLKA
Sbjct: 404 EAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASA 463
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
G+Q+HA I++ G + + GLVDMY KC ++DA +VFE + D +N SW
Sbjct: 464 SF-ASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPD-RNAVSW 521
Query: 290 NAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
NA++ + NG A M SG+Q I + ACS
Sbjct: 522 NALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACS 564
Score = 119 bits (299), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/296 (27%), Positives = 142/296 (47%), Gaps = 7/296 (2%)
Query: 41 NIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLF 100
+ P L N LL + +LD A LF+E+P +D ++ +I GY Y E I LF
Sbjct: 179 DTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLF 238
Query: 101 AEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLIN 160
+M R+ GH F VLKA V + LG+Q+H L G SR+ S+ +++
Sbjct: 239 LKM--RQSGHQPSDF---TFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILD 293
Query: 161 FYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYT 220
FY K + + +F ++ + V + I + + + + F+EM + ++
Sbjct: 294 FYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFP 353
Query: 221 FSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELI 280
F+++L + GRQ+H + +S +V LVDMY KC + +AE +F+ +
Sbjct: 354 FATMLSIAANL-SSLQMGRQLHCQALLATADSILHVGNSLVDMYAKCEMFEEAELIFKSL 412
Query: 281 VDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+ + SW A++ GY++ GL+ K M+ S ++ +S + A +S ++
Sbjct: 413 PQRTTV-SWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFAS 467
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 122/270 (45%), Gaps = 9/270 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N ++ HV G + +AR LFD MP R +W +++ Y + + E LF +M +
Sbjct: 83 NTMISGHVKTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSS- 141
Query: 110 HMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGS--LINFYGKFR 166
P + +L C + QVH KLG N LT S L+ Y + R
Sbjct: 142 ---CTLPDHVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVR 198
Query: 167 CLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226
L+ A +F ++ ++V + I ++G + + + F +M + + + +TFS VLK
Sbjct: 199 RLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLK 258
Query: 227 ACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNI 286
A G+ D G+Q+HA V G D V ++D Y K + + +F+ + + +
Sbjct: 259 AVVGLHDFA-LGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPE-LDF 316
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASG 316
S+N ++ Y + Y + F M+ G
Sbjct: 317 VSYNVVISSYSQADQYEASLHFFREMQCMG 346
Score = 84.0 bits (206), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 110/246 (44%), Gaps = 9/246 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N L+ M+ C + A +F +P R SW +I GYV + + LF +M +G
Sbjct: 390 NSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKM----RG 445
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
L + VLKA ++ LGKQ+H + + G+ N+ L++ Y K ++
Sbjct: 446 SNLRADQS-TFATVLKASASFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIK 504
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229
DA VF ++ N V W A I + G F +M ++ +S + VL AC
Sbjct: 505 DAVQVFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACS 564
Query: 230 --GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
G + G Q + I I + Y C ++D+ G+ +AE++ + + + +
Sbjct: 565 HCGFVEQGTEYFQAMSPIYGITPKKKHYA-C-MLDLLGRNGRFAEAEKLMDEMPFEPDEI 622
Query: 288 SWNAML 293
W+++L
Sbjct: 623 MWSSVL 628
>sp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protein At3g46790,
chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1
Length = 657
Score = 121 bits (303), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 92/330 (27%), Positives = 156/330 (47%), Gaps = 14/330 (4%)
Query: 9 TTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQL 68
+ Y LI C + + A + HI + + L +L+ M+ G +D AR++
Sbjct: 76 SQQTYELLILCCGHRSSLSDALRVHRHILDNGSDQDPFL-ATKLIGMYSDLGSVDYARKV 134
Query: 69 FDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACV 128
FD+ R W + +E + L+ +M + + + + VLKACV
Sbjct: 135 FDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNR-----IGVESDRFTYTYVLKACV 189
Query: 129 ---CTMNMEL-GKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTV 184
CT+N + GK++H L + G S ++ + +L++ Y +F C++ A +VF + N V
Sbjct: 190 ASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVV 249
Query: 185 VWTAKIVNNCREGHFHQVFNDFKEMGRER--IKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
W+A I + G + F+EM RE NS T SVL+AC + G+ +H
Sbjct: 250 SWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQ-GKLIH 308
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
I++ GL+S V LV MYG+C L +RVF+ + D+ ++ SWN+++ Y +G
Sbjct: 309 GYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDR-DVVSWNSLISSYGVHGYG 367
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIACS 332
+A + M A+G + ACS
Sbjct: 368 KKAIQIFEEMLANGASPTPVTFVSVLGACS 397
Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/284 (26%), Positives = 126/284 (44%), Gaps = 13/284 (4%)
Query: 14 TCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMP 73
C+ ECT G E+ H+ +R + + L+ M+ G +D A +F MP
Sbjct: 187 ACVASECTVNHLMKGK-EIHAHLTRR-GYSSHVYIMTTLVDMYARFGCVDYASYVFGGMP 244
Query: 74 LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI-IVCVLKACVCTMN 132
+R+ SW+ MI Y E + F EMM+ K P + +V VL+AC
Sbjct: 245 VRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSS----PNSVTMVSVLQACASLAA 300
Query: 133 MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192
+E GK +HG + + G + + +L+ YG+ LE VF ++ + V W + I +
Sbjct: 301 LEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISS 360
Query: 193 NCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG--GVDDDGNCGRQMHANIVKIGL 250
G+ + F+EM TF SVL AC G+ ++G R G+
Sbjct: 361 YGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGK--RLFETMWRDHGI 418
Query: 251 ESD-EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
+ E+ C +VD+ G+ L +A ++ + + + W ++L
Sbjct: 419 KPQIEHYAC-MVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLL 461
Score = 79.3 bits (194), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 103/208 (49%), Gaps = 14/208 (6%)
Query: 138 QVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREG 197
+VH + GS ++ L LI Y ++ A VF + ++ VW A G
Sbjct: 98 RVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAG 157
Query: 198 HFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC---GRQMHANIVKIGLESDE 254
H +V + +M R ++ + +T++ VLKAC + N G+++HA++ + G S
Sbjct: 158 HGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHV 217
Query: 255 YVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATK-FLYLMK 313
Y+ LVDMY + + A VF + +N+ SW+AM+ Y +NG EA + F +M+
Sbjct: 218 YIMTTLVDMYARFGCVDYASYVFGGM-PVRNVVSWSAMIACYAKNGKAFEALRTFREMMR 276
Query: 314 ASGIQIQESLINDLRI-----ACSSISA 336
+ ++S N + + AC+S++A
Sbjct: 277 ----ETKDSSPNSVTMVSVLQACASLAA 300
>sp|Q9SKQ4|PP167_ARATH Pentatricopeptide repeat-containing protein At2g21090
OS=Arabidopsis thaliana GN=PCMP-E48 PE=2 SV=1
Length = 597
Score = 121 bits (303), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 86/314 (27%), Positives = 144/314 (45%), Gaps = 37/314 (11%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N ++ +V G L AR +FD MP RD SW M++GY + E + + E R+ G
Sbjct: 117 NNMVSGYVKSGMLVRARVVFDSMPERDVVSWNTMVIGYAQDGNLHEALWFYKEF--RRSG 174
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK----- 164
+ F + +L ACV + ++L +Q HG + G N+ L+ S+I+ Y K
Sbjct: 175 ---IKFNEFSFAGLLTACVKSRQLQLNRQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQME 231
Query: 165 --FRC------------------------LEDADFVFSQLKRHNTVVWTAKIVNNCREGH 198
RC +E A+ +F ++ N V WTA I R+G
Sbjct: 232 SAKRCFDEMTVKDIHIWTTLISGYAKLGDMEAAEKLFCEMPEKNPVSWTALIAGYVRQGS 291
Query: 199 FHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQC 258
++ + F++M +K +TFSS L A + + G+++H +++ + + V
Sbjct: 292 GNRALDLFRKMIALGVKPEQFTFSSCLCASASIASLRH-GKEIHGYMIRTNVRPNAIVIS 350
Query: 259 GLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318
L+DMY K L +ERVF + DK + WN M+ ++GL +A + L M +Q
Sbjct: 351 SLIDMYSKSGSLEASERVFRICDDKHDCVFWNTMISALAQHGLGHKALRMLDDMIKFRVQ 410
Query: 319 IQESLINDLRIACS 332
+ + + ACS
Sbjct: 411 PNRTTLVVILNACS 424
Score = 89.4 bits (220), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 66/267 (24%), Positives = 119/267 (44%), Gaps = 31/267 (11%)
Query: 56 HVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKK------- 108
+ CGQ+++A++ FDEM ++D + W +I GY + D + LF EM ++
Sbjct: 224 YAKCGQMESAKRCFDEMTVKDIHIWTTLISGYAKLGDMEAAEKLFCEMPEKNPVSWTALI 283
Query: 109 ---------GHMLLVFPAWIIVCV------LKACVCT----MNMELGKQVHGLLFKLGSS 149
L +F I + V +C+C ++ GK++HG + +
Sbjct: 284 AGYVRQGSGNRALDLFRKMIALGVKPEQFTFSSCLCASASIASLRHGKEIHGYMIRTNVR 343
Query: 150 RNISLTGSLINFYGKFRCLEDADFVFSQL-KRHNTVVWTAKIVNNCREGHFHQVFNDFKE 208
N + SLI+ Y K LE ++ VF +H+ V W I + G H+ +
Sbjct: 344 PNAIVISSLIDMYSKSGSLEASERVFRICDDKHDCVFWNTMISALAQHGLGHKALRMLDD 403
Query: 209 MGRERIKKNSYTFSSVLKAC--GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGK 266
M + R++ N T +L AC G+ ++G R + V+ G+ D+ L+D+ G+
Sbjct: 404 MIKFRVQPNRTTLVVILNACSHSGLVEEGL--RWFESMTVQHGIVPDQEHYACLIDLLGR 461
Query: 267 CRLLRDAERVFELIVDKKNIASWNAML 293
++ R E + + + WNA+L
Sbjct: 462 AGCFKELMRKIEEMPFEPDKHIWNAIL 488
Score = 78.2 bits (191), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 99/237 (41%), Gaps = 32/237 (13%)
Query: 131 MNMELGKQVHGL-LFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAK 189
M M+ GK + +F RN+ ++++ Y K L A VF + + V W
Sbjct: 91 MYMKCGKPIDACKVFDQMHLRNLYSWNNMVSGYVKSGMLVRARVVFDSMPERDVVSWNTM 150
Query: 190 IVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIG 249
++ ++G+ H+ +KE R IK N ++F+ +L AC RQ H ++ G
Sbjct: 151 VIGYAQDGNLHEALWFYKEFRRSGIKFNEFSFAGLLTACVK-SRQLQLNRQAHGQVLVAG 209
Query: 250 LESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK-------------------------- 283
S+ + C ++D Y KC + A+R F+ + K
Sbjct: 210 FLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKDIHIWTTLISGYAKLGDMEAAEKLFC 269
Query: 284 ----KNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
KN SW A++ GY+R G A M A G++ ++ + A +SI++
Sbjct: 270 EMPEKNPVSWTALIAGYVRQGSGNRALDLFRKMIALGVKPEQFTFSSCLCASASIAS 326
>sp|Q9STE1|PP333_ARATH Pentatricopeptide repeat-containing protein At4g21300
OS=Arabidopsis thaliana GN=PCMP-E36 PE=3 SV=1
Length = 857
Score = 120 bits (302), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 84/313 (26%), Positives = 150/313 (47%), Gaps = 11/313 (3%)
Query: 4 LCLPITTDMYT--CLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQ 61
LC ++ D+ T CL+K C K+ G + L+ + + + L+ ++ G+
Sbjct: 130 LCFGVSPDVSTFPCLVKACVALKNFKG-IDFLSDTVSSLGMDCNEFVASSLIKAYLEYGK 188
Query: 62 LDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIV 121
+D +LFD + +D W VM+ GY I F+ M + + F
Sbjct: 189 IDVPSKLFDRVLQKDCVIWNVMLNGYAKCGALDSVIKGFSVMRMDQISPNAVTFD----- 243
Query: 122 CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH 181
CVL C + ++LG Q+HGL+ G S+ SL++ Y K +DA +F + R
Sbjct: 244 CVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIKNSLLSMYSKCGRFDDASKLFRMMSRA 303
Query: 182 NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQM 241
+TV W I + G + F EM + ++ TFSS+L + ++ C +Q+
Sbjct: 304 DTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDAITFSSLLPSVSKFENLEYC-KQI 362
Query: 242 HANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGL 301
H I++ + D ++ L+D Y KCR + A+ +F + ++ + AM+ GY+ NGL
Sbjct: 363 HCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQ-CNSVDVVVFTAMISGYLHNGL 421
Query: 302 YVEATK-FLYLMK 313
Y+++ + F +L+K
Sbjct: 422 YIDSLEMFRWLVK 434
Score = 117 bits (294), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 85/269 (31%), Positives = 127/269 (47%), Gaps = 9/269 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
N LL M+ CG+ D A +LF M D +W MI GYV +E +T F EM+
Sbjct: 278 NSLLSMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSG-- 335
Query: 110 HMLLVFPAWIIVCVLKACVCTM-NMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
V P I L V N+E KQ+H + + S +I LT +LI+ Y K R +
Sbjct: 336 ----VLPDAITFSSLLPSVSKFENLEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGV 391
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
A +FSQ + VV+TA I G + F+ + + +I N T S+L
Sbjct: 392 SMAQNIFSQCNSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSILPVI 451
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288
G+ GR++H I+K G ++ + C ++DMY KC + A +FE + K++I S
Sbjct: 452 -GILLALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFERL-SKRDIVS 509
Query: 289 WNAMLVGYIRNGLYVEATKFLYLMKASGI 317
WN+M+ ++ A M SGI
Sbjct: 510 WNSMITRCAQSDNPSAAIDIFRQMGVSGI 538
Score = 99.0 bits (245), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 68/272 (25%), Positives = 125/272 (45%), Gaps = 15/272 (5%)
Query: 51 RLLLMHVSCGQLDTARQLFDEMPLR--DFNSWAVMIVGYVDVADYQECITLFAEMMKRKK 108
R+L M+ CG ++F + LR W +I +V + + + +M+
Sbjct: 75 RILGMYAMCGSFSDCGKMFYRLDLRRSSIRPWNSIISSFVRNGLLNQALAFYFKMLCFGV 134
Query: 109 GHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168
+ FP C++KACV N + + + LG N + SLI Y ++ +
Sbjct: 135 SPDVSTFP-----CLVKACVALKNFKGIDFLSDTVSSLGMDCNEFVASSLIKAYLEYGKI 189
Query: 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
+ +F ++ + + V+W + + G V F M ++I N+ TF VL C
Sbjct: 190 DVPSKLFDRVLQKDCVIWNVMLNGYAKCGALDSVIKGFSVMRMDQISPNAVTFDCVLSVC 249
Query: 229 GG---VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
+D G Q+H +V G++ + ++ L+ MY KC DA ++F ++ + +
Sbjct: 250 ASKLLID----LGVQLHGLVVVSGVDFEGSIKNSLLSMYSKCGRFDDASKLFRMM-SRAD 304
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGI 317
+WN M+ GY+++GL E+ F Y M +SG+
Sbjct: 305 TVTWNCMISGYVQSGLMEESLTFFYEMISSGV 336
Score = 95.9 bits (237), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 69/277 (24%), Positives = 133/277 (48%), Gaps = 15/277 (5%)
Query: 26 SAGAFELLNHIRK------RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNS 79
S FE L + ++ R +I + + L+ + C + A+ +F + D
Sbjct: 349 SVSKFENLEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSVDVVV 408
Query: 80 WAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI-IVCVLKACVCTMNMELGKQ 138
+ MI GY+ Y + + +F ++K K + P I +V +L + ++LG++
Sbjct: 409 FTAMISGYLHNGLYIDSLEMFRWLVKVK------ISPNEITLVSILPVIGILLALKLGRE 462
Query: 139 VHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGH 198
+HG + K G ++ ++I+ Y K + A +F +L + + V W + I + +
Sbjct: 463 LHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFERLSKRDIVSWNSMITRCAQSDN 522
Query: 199 FHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQC 258
+ F++MG I + + S+ L AC + + + G+ +H ++K L SD Y +
Sbjct: 523 PSAAIDIFRQMGVSGICYDCVSISAALSACANLPSE-SFGKAIHGFMIKHSLASDVYSES 581
Query: 259 GLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG 295
L+DMY KC L+ A VF+ + +KNI SWN+++
Sbjct: 582 TLIDMYAKCGNLKAAMNVFK-TMKEKNIVSWNSIIAA 617
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 99/240 (41%), Gaps = 6/240 (2%)
Query: 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114
M+ CG+++ A ++F+ + RD SW MI + I +F +M G +
Sbjct: 485 MYAKCGRMNLAYEIFERLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQM-----GVSGIC 539
Query: 115 FPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFV 174
+ I L AC + GK +HG + K + ++ +LI+ Y K L+ A V
Sbjct: 540 YDCVSISAALSACANLPSESFGKAIHGFMIKHSLASDVYSESTLIDMYAKCGNLKAAMNV 599
Query: 175 FSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEM-GRERIKKNSYTFSSVLKACGGVDD 233
F +K N V W + I G F EM + I+ + TF ++ +C V D
Sbjct: 600 FKTMKEKNIVSWNSIIAACGNHGKLKDSLCLFHEMVEKSGIRPDQITFLEIISSCCHVGD 659
Query: 234 DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
R + G++ + +VD++G+ L +A + + + W +L
Sbjct: 660 VDEGVRFFRSMTEDYGIQPQQEHYACVVDLFGRAGRLTEAYETVKSMPFPPDAGVWGTLL 719
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVF-ELIVDKKNIASWNAMLVGY 296
G+Q+HA ++ + D Y ++ MY C D ++F L + + +I WN+++ +
Sbjct: 54 GKQVHAFLIVNSISGDSYTDERILGMYAMCGSFSDCGKMFYRLDLRRSSIRPWNSIISSF 113
Query: 297 IRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
+RNGL +A F + M G+ S L AC ++
Sbjct: 114 VRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVAL 151
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/213 (21%), Positives = 89/213 (41%), Gaps = 4/213 (1%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL--KR 180
+L+AC + GKQVH L S + ++ Y D +F +L +R
Sbjct: 41 LLQACSNPNLLRQGKQVHAFLIVNSISGDSYTDERILGMYAMCGSFSDCGKMFYRLDLRR 100
Query: 181 HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQ 240
+ W + I + R G +Q + +M + + TF ++KAC + +
Sbjct: 101 SSIRPWNSIISSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFKGIDF- 159
Query: 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNG 300
+ + +G++ +E+V L+ Y + + ++F+ ++ +K+ WN ML GY + G
Sbjct: 160 LSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVPSKLFDRVL-QKDCVIWNVMLNGYAKCG 218
Query: 301 LYVEATKFLYLMKASGIQIQESLINDLRIACSS 333
K +M+ I + + C+S
Sbjct: 219 ALDSVIKGFSVMRMDQISPNAVTFDCVLSVCAS 251
>sp|Q9LU94|PP255_ARATH Putative pentatricopeptide repeat-containing protein At3g25970
OS=Arabidopsis thaliana GN=PCMP-E46 PE=3 SV=2
Length = 701
Score = 120 bits (302), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 80/307 (26%), Positives = 143/307 (46%), Gaps = 12/307 (3%)
Query: 32 LLNHIRKRV---NIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMP-LRDFNSWAVMIVGY 87
LL + +V ++ + N ++ + CG + A+++FD + +D SW MI G+
Sbjct: 221 LLKQVHAKVLKLGLQHEITICNAMISSYADCGSVSDAKRVFDGLGGSKDLISWNSMIAGF 280
Query: 88 VDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLG 147
+ LF +M + + + +L AC + GK +HG++ K G
Sbjct: 281 SKHELKESAFELFIQMQRHWVETDIYTYTG-----LLSACSGEEHQIFGKSLHGMVIKKG 335
Query: 148 SSRNISLTGSLINFYGKFRC--LEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFND 205
+ S T +LI+ Y +F +EDA +F LK + + W + I ++G
Sbjct: 336 LEQVTSATNALISMYIQFPTGTMEDALSLFESLKSKDLISWNSIITGFAQKGLSEDAVKF 395
Query: 206 FKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYG 265
F + IK + Y FS++L++C + G+Q+HA K G S+E+V L+ MY
Sbjct: 396 FSYLRSSEIKVDDYAFSALLRSCSDLAT-LQLGQQIHALATKSGFVSNEFVISSLIVMYS 454
Query: 266 KCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLIN 325
KC ++ A + F+ I K + +WNAM++GY ++GL + M +++
Sbjct: 455 KCGIIESARKCFQQISSKHSTVAWNAMILGYAQHGLGQVSLDLFSQMCNQNVKLDHVTFT 514
Query: 326 DLRIACS 332
+ ACS
Sbjct: 515 AILTACS 521
Score = 120 bits (301), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 85/287 (29%), Positives = 137/287 (47%), Gaps = 13/287 (4%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
NR+L ++ G L A LFDEMP RD SW MI GY ++ LF MKR
Sbjct: 39 NRILDSYIKFGFLGYANMLFDEMPKRDSVSWNTMISGYTSCGKLEDAWCLFT-CMKRSGS 97
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ + +LK +LG+QVHGL+ K G N+ + SL++ Y K +E
Sbjct: 98 DV----DGYSFSRLLKGIASVKRFDLGEQVHGLVIKGGYECNVYVGSSLVDMYAKCERVE 153
Query: 170 DADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFN--DFKEMGRERIKKNSYTFSSVLKA 227
DA F ++ N+V W A I + F EM + + ++ TF+ +L
Sbjct: 154 DAFEAFKEISEPNSVSWNALIAGFVQVRDIKTAFWLLGLMEM-KAAVTMDAGTFAPLLTL 212
Query: 228 CGGVDDDGNCG--RQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN 285
+DD C +Q+HA ++K+GL+ + + ++ Y C + DA+RVF+ + K+
Sbjct: 213 ---LDDPMFCNLLKQVHAKVLKLGLQHEITICNAMISSYADCGSVSDAKRVFDGLGGSKD 269
Query: 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
+ SWN+M+ G+ ++ L A + M+ ++ L ACS
Sbjct: 270 LISWNSMIAGFSKHELKESAFELFIQMQRHWVETDIYTYTGLLSACS 316
Score = 104 bits (260), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 75/289 (25%), Positives = 138/289 (47%), Gaps = 9/289 (3%)
Query: 50 NRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKG 109
+ L+ M+ C +++ A + F E+ + SW +I G+V V D + L +M+ K
Sbjct: 140 SSLVDMYAKCERVEDAFEAFKEISEPNSVSWNALIAGFVQVRDIKTAFWLLG-LMEMKAA 198
Query: 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169
+ A +L M L KQVH + KLG I++ ++I+ Y +
Sbjct: 199 ---VTMDAGTFAPLLTLLDDPMFCNLLKQVHAKVLKLGLQHEITICNAMISSYADCGSVS 255
Query: 170 DADFVFSQLK-RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228
DA VF L + + W + I + F F +M R ++ + YT++ +L AC
Sbjct: 256 DAKRVFDGLGGSKDLISWNSMIAGFSKHELKESAFELFIQMQRHWVETDIYTYTGLLSAC 315
Query: 229 GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGK--CRLLRDAERVFELIVDKKNI 286
G ++ G+ +H ++K GLE L+ MY + + DA +FE + K++
Sbjct: 316 SG-EEHQIFGKSLHGMVIKKGLEQVTSATNALISMYIQFPTGTMEDALSLFESL-KSKDL 373
Query: 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
SWN+++ G+ + GL +A KF +++S I++ + + L +CS ++
Sbjct: 374 ISWNSIITGFAQKGLSEDAVKFFSYLRSSEIKVDDYAFSALLRSCSDLA 422
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 79/160 (49%), Gaps = 2/160 (1%)
Query: 139 VHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGH 198
H K GS +I ++ +++ Y KF L A+ +F ++ + ++V W I G
Sbjct: 22 THCYAIKCGSISDIYVSNRILDSYIKFGFLGYANMLFDEMPKRDSVSWNTMISGYTSCGK 81
Query: 199 FHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQC 258
+ F M R + Y+FS +LK V + G Q+H ++K G E + YV
Sbjct: 82 LEDAWCLFTCMKRSGSDVDGYSFSRLLKGIASV-KRFDLGEQVHGLVIKGGYECNVYVGS 140
Query: 259 GLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIR 298
LVDMY KC + DA F+ I + N SWNA++ G+++
Sbjct: 141 SLVDMYAKCERVEDAFEAFKEI-SEPNSVSWNALIAGFVQ 179
>sp|Q9LZ19|PP364_ARATH Pentatricopeptide repeat-containing protein At5g04780
OS=Arabidopsis thaliana GN=PCMP-H16 PE=2 SV=2
Length = 635
Score = 120 bits (302), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 83/293 (28%), Positives = 142/293 (48%), Gaps = 7/293 (2%)
Query: 39 RVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98
R++++ + LN L+ + CG ++ ARQ+FD M R SW MI Y E +
Sbjct: 89 RIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALD 148
Query: 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158
+F EM R +G F + I VL AC + K++H L K N+ + +L
Sbjct: 149 IFLEM--RNEG---FKFSEFTISSVLSACGVNCDALECKKLHCLSVKTCIDLNLYVGTAL 203
Query: 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218
++ Y K ++DA VF ++ ++V W++ + + ++ + ++ R +++N
Sbjct: 204 LDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQ 263
Query: 219 YTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE 278
+T SSV+ AC + G+QMHA I K G S+ +V VDMY KC LR++ +F
Sbjct: 264 FTLSSVICACSNLAALIE-GKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFS 322
Query: 279 LIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
V +KN+ WN ++ G+ ++ E M+ G+ E + L C
Sbjct: 323 E-VQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVC 374
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 110/214 (51%), Gaps = 2/214 (0%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
+L+ C + K HG + ++ +++L LIN Y K +E A VF + +
Sbjct: 67 ILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERS 126
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
V W I R + + F EM E K + +T SSVL ACG D C +++H
Sbjct: 127 LVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALEC-KKLH 185
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
VK ++ + YV L+D+Y KC +++DA +VFE + DK ++ +W++M+ GY++N Y
Sbjct: 186 CLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSV-TWSSMVAGYVQNKNY 244
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
EA + ++ + ++ + ACS+++A
Sbjct: 245 EEALLLYRRAQRMSLEQNQFTLSSVICACSNLAA 278
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 116/246 (47%), Gaps = 9/246 (3%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL ++ CG + A Q+F+ M + +W+ M+ GYV +Y+E + L+ R+ M
Sbjct: 203 LLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALLLY-----RRAQRM 257
Query: 112 LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
L + + V+ AC + GKQ+H ++ K G N+ + S ++ Y K L ++
Sbjct: 258 SLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRES 317
Query: 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG-- 229
+FS+++ N +W I + +V F++M ++ + N TFSS+L CG
Sbjct: 318 YIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHT 377
Query: 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASW 289
G+ ++G R GL + +VD+ G+ LL +A + + I + W
Sbjct: 378 GLVEEGR--RFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFDPTASIW 435
Query: 290 NAMLVG 295
++L
Sbjct: 436 GSLLAS 441
>sp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protein At2g03880,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2
SV=1
Length = 630
Score = 120 bits (301), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 87/290 (30%), Positives = 138/290 (47%), Gaps = 12/290 (4%)
Query: 43 KPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAE 102
+P + +N L+ M+V L+ A QLFD+MP R+ SW MI Y +Q+ + L
Sbjct: 93 RPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVL 152
Query: 103 MMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFY 162
M++ + + + VL++C M + +H + K G ++ + +LI+ +
Sbjct: 153 MLRDNVRPNVYTYSS-----VLRSC---NGMSDVRMLHCGIIKEGLESDVFVRSALIDVF 204
Query: 163 GKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFS 222
K EDA VF ++ + +VW + I + FK M R T +
Sbjct: 205 AKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLT 264
Query: 223 SVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282
SVL+AC G+ G Q H +IVK + D + LVDMY KC L DA RVF +
Sbjct: 265 SVLRACTGL-ALLELGMQAHVHIVK--YDQDLILNNALVDMYCKCGSLEDALRVFNQM-K 320
Query: 283 KKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
++++ +W+ M+ G +NG EA K MK+SG + I + ACS
Sbjct: 321 ERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACS 370
Score = 98.6 bits (244), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 106/213 (49%), Gaps = 5/213 (2%)
Query: 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182
++K C+ + G + L+ G + L LIN Y KF L DA +F Q+ + N
Sbjct: 67 LIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRN 126
Query: 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMH 242
+ WT I + + M R+ ++ N YT+SSVL++C G+ D R +H
Sbjct: 127 VISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSD----VRMLH 182
Query: 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302
I+K GLESD +V+ L+D++ K DA VF+ +V I WN+++ G+ +N
Sbjct: 183 CGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIV-WNSIIGGFAQNSRS 241
Query: 303 VEATKFLYLMKASGIQIQESLINDLRIACSSIS 335
A + MK +G +++ + + AC+ ++
Sbjct: 242 DVALELFKRMKRAGFIAEQATLTSVLRACTGLA 274
Score = 75.5 bits (184), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 106/236 (44%), Gaps = 11/236 (4%)
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI 119
G+ + A +FDEM D W +I G+ + + LF M ++ G +
Sbjct: 208 GEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRM--KRAG---FIAEQAT 262
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
+ VL+AC +ELG Q H + K +++ L +L++ Y K LEDA VF+Q+K
Sbjct: 263 LTSVLRACTGLALLELGMQAHVHIVKY--DQDLILNNALVDMYCKCGSLEDALRVFNQMK 320
Query: 180 RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC--GGVDDDGNC 237
+ + W+ I + G+ + F+ M K N T VL AC G+ +DG
Sbjct: 321 ERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWY 380
Query: 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
+ + I + Y C ++D+ GK L DA ++ + + + +W +L
Sbjct: 381 YFRSMKKLYGIDPVREHY-GC-MIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLL 434
>sp|Q7XJN6|PP197_ARATH Pentatricopeptide repeat-containing protein At2g40720
OS=Arabidopsis thaliana GN=PCMP-E26 PE=3 SV=1
Length = 860
Score = 119 bits (299), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 88/294 (29%), Positives = 139/294 (47%), Gaps = 20/294 (6%)
Query: 52 LLLMHVSCGQLDTARQLFDE-------MPLRDFNSWAVMIVGYVDVADYQECITLFAEMM 104
L+ M+V CG LD A Q+FD + RD W MI GY ++E + F M+
Sbjct: 101 LVNMYVKCGFLDYAVQVFDGWSQSQSGVSARDVTVWNSMIDGYFKFRRFKEGVGCFRRML 160
Query: 105 KRKKGHMLLVFPAWIIVCVLKACVC---TMNMELGKQVHGLLFKLGSSRNISLTGSLINF 161
+ V P + ++ + +C E GKQ+HG + + + L +LI+
Sbjct: 161 ------VFGVRPDAFSLSIVVSVMCKEGNFRREEGKQIHGFMLRNSLDTDSFLKTALIDM 214
Query: 162 YGKFRCLEDADFVFSQLK-RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYT 220
Y KF DA VF +++ + N V+W IV G + + +K S +
Sbjct: 215 YFKFGLSIDAWRVFVEIEDKSNVVLWNVMIVGFGGSGICESSLDLYMLAKNNSVKLVSTS 274
Query: 221 FSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELI 280
F+ L AC ++ G GRQ+H ++VK+GL +D YV L+ MY KC ++ +AE VF +
Sbjct: 275 FTGALGACSQSENSG-FGRQIHCDVVKMGLHNDPYVCTSLLSMYSKCGMVGEAETVFSCV 333
Query: 281 VDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
VDK+ + WNAM+ Y N A M+ + + +S I+C S+
Sbjct: 334 VDKR-LEIWNAMVAAYAENDYGYSALDLFGFMRQKSV-LPDSFTLSNVISCCSV 385
Score = 111 bits (278), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 80/289 (27%), Positives = 133/289 (46%), Gaps = 13/289 (4%)
Query: 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM 111
LL M+ CG + A +F + + W M+ Y + + LF M ++
Sbjct: 313 LLSMYSKCGMVGEAETVFSCVVDKRLEIWNAMVAAYAENDYGYSALDLFGFMRQKS---- 368
Query: 112 LLVFPAWIIVCVLKACVCTMNM-ELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170
V P + + +C + + GK VH LFK ++ +L+ Y K C D
Sbjct: 369 --VLPDSFTLSNVISCCSVLGLYNYGKSVHAELFKRPIQSTSTIESALLTLYSKCGCDPD 426
Query: 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQ---VFNDFKEMGRERIKKNSYTFSSVLKA 227
A VF ++ + V W + I C+ G F + VF D K+ + +K +S +SV A
Sbjct: 427 AYLVFKSMEEKDMVAWGSLISGLCKNGKFKEALKVFGDMKD-DDDSLKPDSDIMTSVTNA 485
Query: 228 CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA 287
C G++ G Q+H +++K GL + +V L+D+Y KC L A +VF + +N+
Sbjct: 486 CAGLEAL-RFGLQVHGSMIKTGLVLNVFVGSSLIDLYSKCGLPEMALKVFTSM-STENMV 543
Query: 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336
+WN+M+ Y RN L + LM + GI I + +A SS ++
Sbjct: 544 AWNSMISCYSRNNLPELSIDLFNLMLSQGIFPDSVSITSVLVAISSTAS 592
Score = 104 bits (260), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 80/290 (27%), Positives = 130/290 (44%), Gaps = 5/290 (1%)
Query: 42 IKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFA 101
I+ T + LL ++ CG A +F M +D +W +I G ++E + +F
Sbjct: 404 IQSTSTIESALLTLYSKCGCDPDAYLVFKSMEEKDMVAWGSLISGLCKNGKFKEALKVFG 463
Query: 102 EMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINF 161
+M K L + I+ V AC + G QVHG + K G N+ + SLI+
Sbjct: 464 DM---KDDDDSLKPDSDIMTSVTNACAGLEALRFGLQVHGSMIKTGLVLNVFVGSSLIDL 520
Query: 162 YGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTF 221
Y K E A VF+ + N V W + I R + F M + I +S +
Sbjct: 521 YSKCGLPEMALKVFTSMSTENMVAWNSMISCYSRNNLPELSIDLFNLMLSQGIFPDSVSI 580
Query: 222 SSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIV 281
+SVL A G+ +H +++G+ SD +++ L+DMY KC + AE +F+ +
Sbjct: 581 TSVLVAISSTASLLK-GKSLHGYTLRLGIPSDTHLKNALIDMYVKCGFSKYAENIFKKM- 638
Query: 282 DKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331
K++ +WN M+ GY +G + A MK +G + L AC
Sbjct: 639 QHKSLITWNLMIYGYGSHGDCITALSLFDEMKKAGESPDDVTFLSLISAC 688
Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 108/229 (47%), Gaps = 12/229 (5%)
Query: 116 PAWIIV----CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171
P W V +LKAC N+ GK +HG + LG + + SL+N Y K L+ A
Sbjct: 55 PFWTSVFTFPSLLKACSALTNLSYGKTIHGSVVVLGWRYDPFIATSLVNMYVKCGFLDYA 114
Query: 172 DFVF-------SQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224
VF S + + VW + I + F + F+ M ++ ++++ S V
Sbjct: 115 VQVFDGWSQSQSGVSARDVTVWNSMIDGYFKFRRFKEGVGCFRRMLVFGVRPDAFSLSIV 174
Query: 225 LKA-CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283
+ C + G+Q+H +++ L++D +++ L+DMY K L DA RVF I DK
Sbjct: 175 VSVMCKEGNFRREEGKQIHGFMLRNSLDTDSFLKTALIDMYFKFGLSIDAWRVFVEIEDK 234
Query: 284 KNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332
N+ WN M+VG+ +G+ + L K + +++ + ACS
Sbjct: 235 SNVVLWNVMIVGFGGSGICESSLDLYMLAKNNSVKLVSTSFTGALGACS 283
Score = 69.3 bits (168), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 83/363 (22%), Positives = 141/363 (38%), Gaps = 58/363 (15%)
Query: 2 DNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLN-----RLLLMH 56
D+ L +D+ T + C AG L ++ ++ T L LN L+ ++
Sbjct: 468 DDDSLKPDSDIMTSVTNAC------AGLEALRFGLQVHGSMIKTGLVLNVFVGSSLIDLY 521
Query: 57 VSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP 116
CG + A ++F M + +W MI Y + I LF M+ + +FP
Sbjct: 522 SKCGLPEMALKVFTSMSTENMVAWNSMISCYSRNNLPELSIDLFNLMLSQG------IFP 575
Query: 117 AWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVF 175
+ I VL A T ++ GK +HG +LG + L +LI+ Y K + A+ +F
Sbjct: 576 DSVSITSVLVAISSTASLLKGKSLHGYTLRLGIPSDTHLKNALIDMYVKCGFSKYAENIF 635
Query: 176 SQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC---GGVD 232
+++ + + W I G + F EM + + TF S++ AC G V+
Sbjct: 636 KKMQHKSLITWNLMIYGYGSHGDCITALSLFDEMKKAGESPDDVTFLSLISACNHSGFVE 695
Query: 233 DDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAM 292
+ N M + G+E + +VD+ G+ LL +A + + + + + W +
Sbjct: 696 EGKNIFEFMKQD---YGIEPNMEHYANMVDLLGRAGLLEEAYSFIKAMPIEADSSIWLCL 752
Query: 293 LVG----------------------------------YIRNGLYVEATKFLYLMKASGIQ 318
L Y+ GL EA K L LMK G+
Sbjct: 753 LSASRTHHNVELGILSAEKLLRMEPERGSTYVQLINLYMEAGLKNEAAKLLGLMKEKGLH 812
Query: 319 IQE 321
Q
Sbjct: 813 KQP 815
>sp|Q9FHF9|PP419_ARATH Pentatricopeptide repeat-containing protein At5g46460,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H49 PE=2
SV=1
Length = 697
Score = 119 bits (298), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 80/267 (29%), Positives = 125/267 (46%), Gaps = 28/267 (10%)
Query: 60 GQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR------------- 106
G++D A +LF +MP++D +W M+ GY+ + + LF +M +
Sbjct: 142 GKVDQAERLFYQMPVKDTAAWNSMVHGYLQFGKVDDALKLFKQMPGKNVISWTTMICGLD 201
Query: 107 ---KKGHMLLVFPAWI----------IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNIS 153
+ G L +F + CV+ AC +G QVHGL+ KLG
Sbjct: 202 QNERSGEALDLFKNMLRCCIKSTSRPFTCVITACANAPAFHMGIQVHGLIIKLGFLYEEY 261
Query: 154 LTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRER 213
++ SLI FY + + D+ VF + VWTA + + F M R
Sbjct: 262 VSASLITFYANCKRIGDSRKVFDEKVHEQVAVWTALLSGYSLNKKHEDALSIFSGMLRNS 321
Query: 214 IKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDA 273
I N TF+S L +C + + G++MH VK+GLE+D +V LV MY + DA
Sbjct: 322 ILPNQSTFASGLNSCSALGTL-DWGKEMHGVAVKLGLETDAFVGNSLVVMYSDSGNVNDA 380
Query: 274 ERVFELIVDKKNIASWNAMLVGYIRNG 300
VF + + KK+I SWN+++VG ++G
Sbjct: 381 VSVF-IKIFKKSIVSWNSIIVGCAQHG 406
Score = 107 bits (268), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 82/294 (27%), Positives = 137/294 (46%), Gaps = 21/294 (7%)
Query: 44 PTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEM 103
P + +++ + +L A LFDEMP+RD SW MI G V+ D + LF EM
Sbjct: 64 PHVSLYTKMITGYTRSNRLVDALNLFDEMPVRDVVSWNSMISGCVECGDMNTAVKLFDEM 123
Query: 104 MKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYG 163
+R ++ + A + C V Q L +++ ++ + S+++ Y
Sbjct: 124 PERS----VVSWTAMVNGCFRSGKV--------DQAERLFYQM-PVKDTAAWNSMVHGYL 170
Query: 164 KFRCLEDADFVFSQLKRHNTVVWTAKIV---NNCREGHFHQVFNDFKEMGRERIKKNSYT 220
+F ++DA +F Q+ N + WT I N R G + + FK M R IK S
Sbjct: 171 QFGKVDDALKLFKQMPGKNVISWTTMICGLDQNERSG---EALDLFKNMLRCCIKSTSRP 227
Query: 221 FSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELI 280
F+ V+ AC + G Q+H I+K+G +EYV L+ Y C+ + D+ +VF+
Sbjct: 228 FTCVITACANA-PAFHMGIQVHGLIIKLGFLYEEYVSASLITFYANCKRIGDSRKVFDEK 286
Query: 281 VDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334
V ++ +A W A+L GY N + +A M + I +S +CS++
Sbjct: 287 VHEQ-VAVWTALLSGYSLNKKHEDALSIFSGMLRNSILPNQSTFASGLNSCSAL 339
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 74/297 (24%), Positives = 136/297 (45%), Gaps = 21/297 (7%)
Query: 5 CLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLN----RLLLMHVSCG 60
C+ T+ +TC+I C +A AF + + + IK L+ L+ + +C
Sbjct: 220 CIKSTSRPFTCVITACA----NAPAFHMGIQVHGLI-IKLGFLYEEYVSASLITFYANCK 274
Query: 61 QLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWI 119
++ +R++FDE W ++ GY +++ +++F+ M++ + P
Sbjct: 275 RIGDSRKVFDEKVHEQVAVWTALLSGYSLNKKHEDALSIFSGMLRNS------ILPNQST 328
Query: 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179
L +C ++ GK++HG+ KLG + + SL+ Y + DA VF ++
Sbjct: 329 FASGLNSCSALGTLDWGKEMHGVAVKLGLETDAFVGNSLVVMYSDSGNVNDAVSVFIKIF 388
Query: 180 RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA---CGGVDDDGN 236
+ + V W + IV + G F F +M R + + TF+ +L A CG ++
Sbjct: 389 KKSIVSWNSIIVGCAQHGRGKWAFVIFGQMIRLNKEPDEITFTGLLSACSHCGFLEKGRK 448
Query: 237 CGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML 293
M + I I + Y C +VD+ G+C L++AE + E +V K N W A+L
Sbjct: 449 LFYYMSSGINHIDRKIQHYT-C-MVDILGRCGKLKEAEELIERMVVKPNEMVWLALL 503
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.327 0.140 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 120,303,830
Number of Sequences: 539616
Number of extensions: 4793440
Number of successful extensions: 16138
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 131
Number of HSP's that attempted gapping in prelim test: 12503
Number of HSP's gapped (non-prelim): 1547
length of query: 340
length of database: 191,569,459
effective HSP length: 118
effective length of query: 222
effective length of database: 127,894,771
effective search space: 28392639162
effective search space used: 28392639162
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 61 (28.1 bits)