Query 044786
Match_columns 340
No_of_seqs 389 out of 1250
Neff 11.5
Searched_HMMs 46136
Date Fri Mar 29 06:44:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044786.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044786hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 9.3E-60 2E-64 431.5 34.3 325 5-337 118-442 (697)
2 PLN03218 maturation of RBCL 1; 100.0 5.9E-59 1.3E-63 430.4 37.1 324 8-338 435-771 (1060)
3 PLN03218 maturation of RBCL 1; 100.0 9.7E-58 2.1E-62 422.3 36.9 327 1-332 463-800 (1060)
4 PLN03077 Protein ECB2; Provisi 100.0 7.3E-58 1.6E-62 428.3 33.3 327 1-337 279-605 (857)
5 PLN03077 Protein ECB2; Provisi 100.0 1.7E-57 3.7E-62 425.8 33.0 329 1-338 178-506 (857)
6 PLN03081 pentatricopeptide (PP 100.0 1.4E-55 3E-60 404.1 33.1 323 8-338 187-545 (697)
7 PRK11788 tetratricopeptide rep 99.9 6.6E-24 1.4E-28 183.3 30.3 302 19-337 44-363 (389)
8 TIGR02917 PEP_TPR_lipo putativ 99.9 1.3E-20 2.9E-25 179.7 35.7 313 11-337 568-887 (899)
9 TIGR02917 PEP_TPR_lipo putativ 99.9 6.8E-20 1.5E-24 174.9 36.4 316 7-336 462-819 (899)
10 PRK11788 tetratricopeptide rep 99.9 2.4E-19 5.3E-24 154.9 28.4 273 54-333 43-327 (389)
11 PRK15174 Vi polysaccharide exp 99.8 1E-16 2.3E-21 145.7 34.9 289 14-315 80-381 (656)
12 PRK15174 Vi polysaccharide exp 99.8 3.1E-16 6.7E-21 142.7 34.2 310 13-336 45-367 (656)
13 TIGR00990 3a0801s09 mitochondr 99.7 2.6E-14 5.6E-19 130.3 33.2 320 6-336 156-557 (615)
14 KOG4422 Uncharacterized conser 99.7 5.2E-14 1.1E-18 114.5 28.7 312 10-333 116-480 (625)
15 TIGR00990 3a0801s09 mitochondr 99.7 6.4E-14 1.4E-18 127.8 32.9 296 13-316 130-497 (615)
16 PRK11447 cellulose synthase su 99.7 5.8E-14 1.3E-18 136.3 33.6 62 253-314 636-699 (1157)
17 PRK11447 cellulose synthase su 99.7 1.1E-13 2.3E-18 134.4 35.1 220 83-314 467-739 (1157)
18 KOG4422 Uncharacterized conser 99.7 4.4E-13 9.5E-18 109.2 30.8 306 6-318 203-593 (625)
19 KOG4626 O-linked N-acetylgluco 99.7 1.3E-14 2.7E-19 123.2 21.1 293 8-315 114-451 (966)
20 PRK10049 pgaA outer membrane p 99.7 2.4E-12 5.2E-17 119.8 35.1 302 8-321 47-426 (765)
21 PRK10049 pgaA outer membrane p 99.6 4.9E-12 1.1E-16 117.8 35.7 316 7-335 12-407 (765)
22 KOG4626 O-linked N-acetylgluco 99.6 1.3E-13 2.8E-18 117.2 22.4 295 10-321 150-489 (966)
23 TIGR00540 hemY_coli hemY prote 99.6 6.1E-12 1.3E-16 108.9 32.1 279 21-312 95-396 (409)
24 PRK10747 putative protoheme IX 99.6 5.6E-12 1.2E-16 108.6 31.4 277 23-314 97-389 (398)
25 PF13429 TPR_15: Tetratricopep 99.6 7.2E-15 1.6E-19 120.8 12.0 250 51-313 13-275 (280)
26 PF13041 PPR_2: PPR repeat fam 99.6 2.8E-15 6E-20 88.0 6.5 50 284-333 1-50 (50)
27 PF13429 TPR_15: Tetratricopep 99.6 6.5E-15 1.4E-19 121.1 10.8 259 10-281 9-275 (280)
28 PRK09782 bacteriophage N4 rece 99.6 1.4E-11 3E-16 115.7 32.1 292 11-316 377-707 (987)
29 COG2956 Predicted N-acetylgluc 99.6 1.6E-11 3.6E-16 96.6 26.7 295 12-318 38-350 (389)
30 COG3071 HemY Uncharacterized e 99.6 5.1E-11 1.1E-15 96.6 29.7 284 23-320 97-395 (400)
31 PRK10747 putative protoheme IX 99.5 6.5E-11 1.4E-15 102.0 29.3 264 59-338 97-378 (398)
32 KOG4318 Bicoid mRNA stability 99.5 2.1E-12 4.5E-17 114.0 19.8 267 31-337 11-287 (1088)
33 PF13041 PPR_2: PPR repeat fam 99.5 4.1E-14 8.8E-19 83.0 5.9 50 181-230 1-50 (50)
34 PRK14574 hmsH outer membrane p 99.5 4.6E-10 1E-14 103.6 34.4 308 17-335 109-498 (822)
35 PRK09782 bacteriophage N4 rece 99.5 5.9E-11 1.3E-15 111.5 29.1 255 45-312 476-737 (987)
36 KOG2003 TPR repeat-containing 99.5 1.2E-11 2.7E-16 101.7 20.6 271 56-338 429-711 (840)
37 KOG1126 DNA-binding cell divis 99.5 1.9E-11 4.1E-16 105.0 22.4 282 24-321 333-626 (638)
38 PRK14574 hmsH outer membrane p 99.5 2.2E-10 4.8E-15 105.6 30.7 283 20-315 44-396 (822)
39 KOG4318 Bicoid mRNA stability 99.5 6.7E-12 1.5E-16 110.8 19.7 247 1-270 16-287 (1088)
40 KOG1155 Anaphase-promoting com 99.5 4.2E-10 9.1E-15 93.0 27.2 304 16-337 233-556 (559)
41 KOG2076 RNA polymerase III tra 99.5 3.9E-10 8.4E-15 100.2 28.8 296 10-315 139-478 (895)
42 TIGR00540 hemY_coli hemY prote 99.4 3.9E-10 8.4E-15 97.7 25.8 263 7-281 114-397 (409)
43 COG2956 Predicted N-acetylgluc 99.4 4.9E-10 1.1E-14 88.5 23.6 266 59-332 48-326 (389)
44 KOG1155 Anaphase-promoting com 99.4 7.8E-10 1.7E-14 91.4 25.2 288 4-315 256-553 (559)
45 TIGR02521 type_IV_pilW type IV 99.4 2.9E-10 6.4E-15 90.8 21.2 194 45-246 30-230 (234)
46 KOG1126 DNA-binding cell divis 99.3 2.7E-10 5.8E-15 98.1 19.9 261 11-282 354-619 (638)
47 TIGR02521 type_IV_pilW type IV 99.3 1E-09 2.2E-14 87.7 22.1 192 79-314 33-231 (234)
48 PRK12370 invasion protein regu 99.3 1.2E-09 2.5E-14 98.4 22.7 257 45-316 255-536 (553)
49 PRK12370 invasion protein regu 99.3 2.9E-09 6.2E-14 95.9 23.9 228 76-315 255-502 (553)
50 KOG2076 RNA polymerase III tra 99.3 3.7E-08 8E-13 88.0 28.9 298 7-313 170-510 (895)
51 KOG1840 Kinesin light chain [C 99.2 4.8E-09 1E-13 90.8 22.3 232 79-313 201-477 (508)
52 COG3071 HemY Uncharacterized e 99.2 3.3E-08 7.2E-13 80.6 25.5 273 51-337 87-377 (400)
53 KOG2002 TPR-containing nuclear 99.2 3.4E-08 7.3E-13 89.0 26.0 309 8-329 412-759 (1018)
54 KOG1840 Kinesin light chain [C 99.2 4.7E-09 1E-13 90.9 19.8 167 12-178 201-393 (508)
55 KOG2003 TPR repeat-containing 99.2 3.1E-08 6.6E-13 82.2 23.2 165 163-333 501-671 (840)
56 KOG1129 TPR repeat-containing 99.1 6.6E-09 1.4E-13 82.5 16.9 225 81-315 227-458 (478)
57 KOG1174 Anaphase-promoting com 99.1 5.3E-07 1.1E-11 74.1 27.6 303 3-315 187-500 (564)
58 KOG1915 Cell cycle control pro 99.1 5.5E-07 1.2E-11 75.3 28.0 99 216-316 435-537 (677)
59 KOG0495 HAT repeat protein [RN 99.1 8.8E-07 1.9E-11 77.0 29.8 310 11-335 517-865 (913)
60 KOG0547 Translocase of outer m 99.1 1.5E-07 3.3E-12 78.8 23.9 214 91-314 340-565 (606)
61 PF12569 NARP1: NMDA receptor- 99.1 8.7E-07 1.9E-11 77.9 29.5 280 17-312 11-331 (517)
62 KOG2002 TPR-containing nuclear 99.1 4.8E-07 1E-11 81.8 27.6 236 75-315 268-525 (1018)
63 KOG1129 TPR repeat-containing 99.1 2.1E-08 4.5E-13 79.7 16.7 225 49-282 226-457 (478)
64 KOG0495 HAT repeat protein [RN 99.0 2.2E-06 4.7E-11 74.6 29.1 289 10-315 584-880 (913)
65 cd05804 StaR_like StaR_like; a 99.0 2.6E-06 5.7E-11 72.8 30.4 295 11-315 7-336 (355)
66 KOG1173 Anaphase-promoting com 99.0 5.6E-07 1.2E-11 76.8 25.0 280 43-334 241-535 (611)
67 PRK11189 lipoprotein NlpI; Pro 99.0 1.2E-07 2.7E-12 78.3 21.2 216 23-249 39-266 (296)
68 PF12854 PPR_1: PPR repeat 99.0 5.5E-10 1.2E-14 58.9 4.2 33 41-73 2-34 (34)
69 PF12854 PPR_1: PPR repeat 99.0 4.5E-10 9.7E-15 59.2 3.8 32 249-280 2-33 (34)
70 PRK11189 lipoprotein NlpI; Pro 99.0 8.8E-07 1.9E-11 73.3 25.1 92 119-211 66-160 (296)
71 COG3063 PilF Tfp pilus assembl 99.0 3.3E-07 7.1E-12 69.5 20.1 199 80-289 38-243 (250)
72 COG3063 PilF Tfp pilus assembl 99.0 8.8E-07 1.9E-11 67.3 20.5 190 14-210 39-234 (250)
73 KOG1173 Anaphase-promoting com 98.9 2.9E-06 6.3E-11 72.5 24.7 279 6-296 240-532 (611)
74 PF04733 Coatomer_E: Coatomer 98.8 6.4E-07 1.4E-11 73.3 17.7 149 160-315 110-265 (290)
75 PF04733 Coatomer_E: Coatomer 98.8 2.9E-07 6.2E-12 75.3 15.6 251 17-282 8-264 (290)
76 KOG4340 Uncharacterized conser 98.8 2.3E-06 4.9E-11 67.6 18.8 305 1-312 1-372 (459)
77 KOG2047 mRNA splicing factor [ 98.8 4.1E-05 9E-10 66.8 27.1 300 17-318 109-509 (835)
78 cd05804 StaR_like StaR_like; a 98.8 2.2E-05 4.7E-10 67.2 26.2 253 19-281 52-334 (355)
79 PRK14720 transcript cleavage f 98.7 1.3E-05 2.7E-10 74.4 24.7 262 10-328 31-297 (906)
80 PF12569 NARP1: NMDA receptor- 98.7 2.3E-05 5E-10 69.1 24.4 256 53-319 11-295 (517)
81 KOG1174 Anaphase-promoting com 98.7 3.1E-05 6.6E-10 64.1 22.9 262 6-282 228-499 (564)
82 KOG0547 Translocase of outer m 98.7 4.2E-06 9.1E-11 70.5 18.3 217 56-281 336-564 (606)
83 TIGR00756 PPR pentatricopeptid 98.7 4.3E-08 9.3E-13 52.5 4.3 35 287-321 1-35 (35)
84 KOG1156 N-terminal acetyltrans 98.7 0.00017 3.7E-09 63.1 27.4 311 10-330 75-452 (700)
85 TIGR03302 OM_YfiO outer membra 98.6 5.1E-06 1.1E-10 66.6 17.1 177 9-212 32-232 (235)
86 PRK04841 transcriptional regul 98.6 0.00016 3.4E-09 70.0 30.1 301 15-316 414-761 (903)
87 KOG1128 Uncharacterized conser 98.6 7.9E-06 1.7E-10 72.1 18.6 232 43-297 395-634 (777)
88 KOG1070 rRNA processing protei 98.6 2.5E-05 5.5E-10 73.7 22.7 217 45-271 1457-1688(1710)
89 PF13812 PPR_3: Pentatricopept 98.6 8.6E-08 1.9E-12 50.9 4.1 33 287-319 2-34 (34)
90 PRK10370 formate-dependent nit 98.6 1.3E-05 2.8E-10 62.0 17.3 153 53-221 23-181 (198)
91 TIGR00756 PPR pentatricopeptid 98.6 8.7E-08 1.9E-12 51.2 3.9 35 184-218 1-35 (35)
92 KOG1070 rRNA processing protei 98.6 2.7E-05 5.8E-10 73.6 21.6 220 114-335 1455-1685(1710)
93 TIGR03302 OM_YfiO outer membra 98.5 1.8E-05 3.9E-10 63.4 18.1 185 45-248 32-232 (235)
94 KOG2047 mRNA splicing factor [ 98.5 0.00054 1.2E-08 60.2 29.8 166 154-322 389-585 (835)
95 KOG3785 Uncharacterized conser 98.5 0.00028 6.1E-09 57.5 23.5 89 225-315 400-490 (557)
96 KOG1128 Uncharacterized conser 98.5 2.1E-06 4.5E-11 75.6 12.4 187 12-211 426-615 (777)
97 PF13812 PPR_3: Pentatricopept 98.5 1.9E-07 4.1E-12 49.5 3.9 34 183-216 1-34 (34)
98 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 5.5E-06 1.2E-10 70.2 14.6 118 83-210 175-295 (395)
99 KOG1125 TPR repeat-containing 98.5 2.3E-05 5E-10 67.4 17.9 219 20-245 295-525 (579)
100 KOG4340 Uncharacterized conser 98.5 5.4E-05 1.2E-09 60.1 18.1 272 48-334 12-323 (459)
101 COG5010 TadD Flp pilus assembl 98.5 2.6E-05 5.6E-10 60.6 15.9 154 50-210 70-229 (257)
102 KOG3617 WD40 and TPR repeat-co 98.4 0.00016 3.4E-09 65.2 22.0 222 20-281 738-994 (1416)
103 PRK15359 type III secretion sy 98.4 8.1E-06 1.8E-10 59.7 12.2 11 196-206 105-115 (144)
104 COG5010 TadD Flp pilus assembl 98.4 3E-05 6.4E-10 60.3 15.5 159 14-181 70-231 (257)
105 KOG1915 Cell cycle control pro 98.4 0.0008 1.7E-08 57.1 27.1 295 22-330 85-409 (677)
106 KOG3785 Uncharacterized conser 98.4 0.00028 6.1E-09 57.5 21.0 84 17-101 29-115 (557)
107 PF01535 PPR: PPR repeat; Int 98.4 3.5E-07 7.7E-12 47.3 3.2 31 287-317 1-31 (31)
108 PLN02789 farnesyltranstransfer 98.4 0.00066 1.4E-08 56.6 24.0 221 83-312 43-299 (320)
109 KOG0985 Vesicle coat protein c 98.4 0.00067 1.5E-08 62.7 25.1 285 8-336 950-1264(1666)
110 PRK15359 type III secretion sy 98.4 1.8E-05 3.8E-10 57.9 13.0 91 51-147 29-122 (144)
111 KOG2376 Signal recognition par 98.4 0.0014 3E-08 57.1 28.8 109 224-336 382-507 (652)
112 PLN02789 farnesyltranstransfer 98.3 0.00072 1.6E-08 56.4 22.3 187 16-211 43-249 (320)
113 PRK15179 Vi polysaccharide bio 98.3 0.00019 4E-09 66.0 20.2 127 77-211 86-216 (694)
114 PRK15179 Vi polysaccharide bio 98.3 5.8E-05 1.2E-09 69.2 16.7 131 42-179 82-215 (694)
115 PF01535 PPR: PPR repeat; Int 98.3 9.8E-07 2.1E-11 45.6 3.3 31 184-214 1-31 (31)
116 KOG1125 TPR repeat-containing 98.3 0.00017 3.7E-09 62.3 18.2 216 87-312 295-524 (579)
117 PF09976 TPR_21: Tetratricopep 98.3 7.5E-05 1.6E-09 54.8 14.4 125 80-208 15-143 (145)
118 PRK10370 formate-dependent nit 98.3 5.3E-05 1.1E-09 58.6 14.0 145 16-180 22-172 (198)
119 KOG3081 Vesicle coat complex C 98.3 0.0009 2E-08 52.5 20.3 150 157-313 113-269 (299)
120 KOG1914 mRNA cleavage and poly 98.3 0.0021 4.6E-08 55.5 25.0 65 6-73 16-80 (656)
121 PRK04841 transcriptional regul 98.2 0.0012 2.5E-08 64.1 24.9 261 51-315 414-720 (903)
122 TIGR02552 LcrH_SycD type III s 98.2 7.3E-05 1.6E-09 54.1 12.5 102 117-221 17-121 (135)
123 KOG3616 Selective LIM binding 98.2 0.0004 8.7E-09 62.0 18.6 78 120-206 768-847 (1636)
124 COG4783 Putative Zn-dependent 98.2 0.00069 1.5E-08 57.6 19.1 133 58-212 318-454 (484)
125 KOG3081 Vesicle coat complex C 98.1 0.0023 5E-08 50.2 22.6 261 3-282 3-270 (299)
126 COG4783 Putative Zn-dependent 98.1 0.00024 5.1E-09 60.3 15.4 136 20-181 316-454 (484)
127 TIGR02552 LcrH_SycD type III s 98.1 5.9E-05 1.3E-09 54.6 10.6 95 47-147 18-115 (135)
128 KOG4162 Predicted calmodulin-b 98.1 0.0073 1.6E-07 54.5 27.2 173 4-178 317-539 (799)
129 KOG0985 Vesicle coat protein c 98.1 0.0044 9.6E-08 57.6 23.5 230 16-281 1054-1306(1666)
130 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00015 3.2E-09 61.7 13.5 126 47-179 170-295 (395)
131 KOG0624 dsRNA-activated protei 98.1 0.0044 9.5E-08 50.6 24.0 285 22-315 50-370 (504)
132 PF09976 TPR_21: Tetratricopep 98.0 0.00015 3.2E-09 53.2 11.6 122 48-177 14-143 (145)
133 KOG2376 Signal recognition par 98.0 0.0078 1.7E-07 52.6 30.1 188 13-213 15-254 (652)
134 PF06239 ECSIT: Evolutionarily 98.0 0.00022 4.7E-09 54.3 11.9 117 114-247 44-167 (228)
135 KOG3616 Selective LIM binding 98.0 0.0034 7.4E-08 56.4 20.7 79 191-281 740-818 (1636)
136 KOG0548 Molecular co-chaperone 98.0 0.0089 1.9E-07 51.7 24.7 141 190-334 305-472 (539)
137 PF08579 RPM2: Mitochondrial r 98.0 8.5E-05 1.8E-09 50.0 8.1 89 119-230 27-116 (120)
138 PRK15363 pathogenicity island 97.9 0.00056 1.2E-08 49.7 12.7 103 69-178 26-129 (157)
139 KOG2053 Mitochondrial inherita 97.9 0.0056 1.2E-07 56.1 20.7 109 22-139 21-132 (932)
140 PF10037 MRP-S27: Mitochondria 97.9 0.00032 7E-09 60.0 12.6 120 215-334 63-186 (429)
141 PF08579 RPM2: Mitochondrial r 97.9 0.00014 3E-09 49.0 8.2 82 185-266 27-116 (120)
142 KOG3617 WD40 and TPR repeat-co 97.9 0.015 3.2E-07 53.2 23.0 188 9-210 756-994 (1416)
143 PF10037 MRP-S27: Mitochondria 97.9 0.00092 2E-08 57.4 14.9 85 152-236 66-156 (429)
144 KOG4162 Predicted calmodulin-b 97.9 0.016 3.4E-07 52.4 22.5 277 25-315 459-783 (799)
145 cd00189 TPR Tetratricopeptide 97.9 0.00034 7.4E-09 46.5 10.2 92 80-178 3-94 (100)
146 PRK14720 transcript cleavage f 97.9 0.0081 1.8E-07 56.5 21.6 233 41-332 25-268 (906)
147 KOG3060 Uncharacterized conser 97.8 0.0088 1.9E-07 46.8 18.7 184 22-212 24-220 (289)
148 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00076 1.6E-08 47.4 11.7 96 11-106 3-105 (119)
149 PF12895 Apc3: Anaphase-promot 97.8 8.9E-05 1.9E-09 48.6 6.3 82 90-177 2-83 (84)
150 KOG0624 dsRNA-activated protei 97.8 0.013 2.9E-07 47.9 22.6 263 7-282 66-369 (504)
151 KOG1156 N-terminal acetyltrans 97.8 0.023 5E-07 50.4 26.9 291 11-317 144-470 (700)
152 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00089 1.9E-08 47.0 11.3 24 83-106 8-31 (119)
153 PF12895 Apc3: Anaphase-promot 97.7 0.00014 3E-09 47.7 6.5 79 130-208 2-83 (84)
154 cd00189 TPR Tetratricopeptide 97.7 0.00032 6.8E-09 46.7 8.6 91 13-105 3-96 (100)
155 PF06239 ECSIT: Evolutionarily 97.7 0.0014 3E-08 50.1 11.7 98 172-269 34-153 (228)
156 PRK02603 photosystem I assembl 97.7 0.0021 4.6E-08 48.6 13.0 89 79-172 37-126 (172)
157 PF14938 SNAP: Soluble NSF att 97.7 0.0037 8E-08 51.5 15.0 88 123-211 120-224 (282)
158 PF05843 Suf: Suppressor of fo 97.6 0.003 6.5E-08 51.9 14.1 142 184-330 2-149 (280)
159 KOG2053 Mitochondrial inherita 97.6 0.053 1.2E-06 50.1 24.1 53 264-316 200-256 (932)
160 CHL00033 ycf3 photosystem I as 97.6 0.0026 5.6E-08 48.0 12.4 65 79-146 37-101 (168)
161 PF05843 Suf: Suppressor of fo 97.6 0.0024 5.2E-08 52.5 12.9 141 79-228 3-150 (280)
162 PLN03088 SGT1, suppressor of 97.6 0.0012 2.5E-08 56.3 11.1 101 17-126 9-112 (356)
163 PRK10866 outer membrane biogen 97.6 0.027 5.8E-07 45.2 18.2 55 53-107 39-99 (243)
164 KOG1127 TPR repeat-containing 97.6 0.076 1.6E-06 49.8 24.0 157 13-178 495-656 (1238)
165 CHL00033 ycf3 photosystem I as 97.5 0.0015 3.4E-08 49.2 10.4 110 26-141 15-137 (168)
166 PF14938 SNAP: Soluble NSF att 97.5 0.009 1.9E-07 49.3 15.5 130 81-211 39-183 (282)
167 PF14559 TPR_19: Tetratricopep 97.5 0.0005 1.1E-08 42.9 6.3 62 265-328 2-65 (68)
168 KOG1127 TPR repeat-containing 97.5 0.014 3E-07 54.4 17.3 97 10-106 526-625 (1238)
169 PRK10153 DNA-binding transcrip 97.5 0.007 1.5E-07 54.1 15.3 59 118-178 421-479 (517)
170 PLN03088 SGT1, suppressor of 97.4 0.0036 7.8E-08 53.3 12.6 87 55-147 11-100 (356)
171 PRK10153 DNA-binding transcrip 97.4 0.0097 2.1E-07 53.2 15.7 139 75-221 335-489 (517)
172 PF04840 Vps16_C: Vps16, C-ter 97.4 0.051 1.1E-06 45.4 23.2 105 186-308 180-284 (319)
173 PRK02603 photosystem I assembl 97.4 0.0038 8.2E-08 47.3 11.5 110 47-166 36-165 (172)
174 PRK15363 pathogenicity island 97.4 0.0039 8.5E-08 45.4 10.6 96 46-147 35-133 (157)
175 PF03704 BTAD: Bacterial trans 97.4 0.0016 3.4E-08 47.8 8.5 70 256-325 64-140 (146)
176 KOG2280 Vacuolar assembly/sort 97.4 0.096 2.1E-06 47.5 20.2 109 186-311 687-795 (829)
177 KOG3060 Uncharacterized conser 97.3 0.048 1.1E-06 42.8 20.1 71 165-236 99-172 (289)
178 PF13414 TPR_11: TPR repeat; P 97.3 0.0015 3.3E-08 40.8 7.0 64 77-146 3-67 (69)
179 PF13432 TPR_16: Tetratricopep 97.3 0.0019 4.1E-08 39.8 7.3 56 260-315 3-60 (65)
180 KOG1914 mRNA cleavage and poly 97.3 0.096 2.1E-06 45.8 26.1 116 220-337 368-488 (656)
181 PF14559 TPR_19: Tetratricopep 97.3 0.0015 3.3E-08 40.6 6.4 52 21-74 2-53 (68)
182 KOG2796 Uncharacterized conser 97.2 0.026 5.6E-07 44.5 13.8 140 80-226 180-327 (366)
183 PF12688 TPR_5: Tetratrico pep 97.2 0.02 4.4E-07 40.1 12.1 108 83-193 7-116 (120)
184 KOG1130 Predicted G-alpha GTPa 97.2 0.0082 1.8E-07 50.3 11.5 284 10-314 15-343 (639)
185 PF13414 TPR_11: TPR repeat; P 97.2 0.0034 7.3E-08 39.2 7.6 63 253-315 2-67 (69)
186 PRK10866 outer membrane biogen 97.2 0.082 1.8E-06 42.4 19.8 194 82-313 37-239 (243)
187 PF13432 TPR_16: Tetratricopep 97.2 0.002 4.4E-08 39.6 6.3 56 85-146 5-60 (65)
188 PF12688 TPR_5: Tetratrico pep 97.1 0.016 3.5E-07 40.5 10.9 104 122-229 6-117 (120)
189 PF13424 TPR_12: Tetratricopep 97.1 0.003 6.4E-08 40.6 6.4 67 79-145 7-74 (78)
190 PF04840 Vps16_C: Vps16, C-ter 97.1 0.15 3.2E-06 42.7 23.1 86 219-312 178-263 (319)
191 KOG2796 Uncharacterized conser 97.0 0.05 1.1E-06 43.0 13.6 131 184-315 178-315 (366)
192 PF13424 TPR_12: Tetratricopep 97.0 0.0043 9.2E-08 39.8 6.9 61 254-314 5-74 (78)
193 KOG2041 WD40 repeat protein [G 97.0 0.25 5.3E-06 44.8 23.8 125 7-140 689-819 (1189)
194 COG4700 Uncharacterized protei 97.0 0.062 1.3E-06 40.2 13.1 154 16-178 62-219 (251)
195 KOG0553 TPR repeat-containing 97.0 0.013 2.8E-07 47.1 10.3 99 126-227 90-191 (304)
196 PRK10803 tol-pal system protei 97.0 0.015 3.2E-07 47.1 10.9 83 130-212 156-246 (263)
197 PF03704 BTAD: Bacterial trans 97.0 0.0059 1.3E-07 44.8 8.1 71 79-155 64-139 (146)
198 PRK10803 tol-pal system protei 96.9 0.017 3.8E-07 46.7 10.8 97 80-179 146-244 (263)
199 KOG0553 TPR repeat-containing 96.8 0.015 3.3E-07 46.7 9.6 101 55-163 90-193 (304)
200 PF12921 ATP13: Mitochondrial 96.8 0.047 1E-06 38.6 10.8 48 284-331 50-98 (126)
201 PF12921 ATP13: Mitochondrial 96.7 0.029 6.3E-07 39.7 9.4 52 75-130 50-101 (126)
202 PF13371 TPR_9: Tetratricopept 96.7 0.014 3E-07 36.8 7.2 61 262-324 3-65 (73)
203 KOG0548 Molecular co-chaperone 96.7 0.39 8.4E-06 42.0 20.1 221 49-282 227-454 (539)
204 PF13525 YfiO: Outer membrane 96.7 0.21 4.5E-06 38.9 15.3 55 19-73 14-69 (203)
205 COG4235 Cytochrome c biogenesi 96.6 0.15 3.3E-06 41.2 13.8 99 114-213 153-257 (287)
206 KOG1130 Predicted G-alpha GTPa 96.6 0.047 1E-06 46.0 11.1 247 86-335 26-329 (639)
207 PF07079 DUF1347: Protein of u 96.6 0.42 9.2E-06 41.1 24.4 119 192-313 388-522 (549)
208 PF13371 TPR_9: Tetratricopept 96.5 0.013 2.9E-07 36.9 6.2 56 86-147 4-59 (73)
209 COG4700 Uncharacterized protei 96.5 0.25 5.4E-06 37.1 16.5 65 114-178 86-150 (251)
210 PF04053 Coatomer_WDAD: Coatom 96.4 0.078 1.7E-06 46.5 11.9 159 19-209 270-428 (443)
211 KOG1538 Uncharacterized conser 96.4 0.73 1.6E-05 41.6 18.7 22 294-315 825-846 (1081)
212 COG4235 Cytochrome c biogenesi 96.3 0.076 1.6E-06 42.9 10.4 101 43-149 153-259 (287)
213 PF13281 DUF4071: Domain of un 96.2 0.4 8.8E-06 40.7 14.6 161 45-212 140-334 (374)
214 KOG3941 Intermediate in Toll s 96.1 0.082 1.8E-06 42.3 9.4 90 180-269 64-173 (406)
215 PRK15331 chaperone protein Sic 96.1 0.07 1.5E-06 39.2 8.5 85 88-179 48-132 (165)
216 PF10300 DUF3808: Protein of u 96.0 0.32 6.9E-06 43.3 14.1 173 27-211 174-375 (468)
217 PF13281 DUF4071: Domain of un 96.0 0.88 1.9E-05 38.8 19.3 160 156-315 145-334 (374)
218 PF10300 DUF3808: Protein of u 95.9 0.45 9.8E-06 42.4 14.5 145 78-228 189-349 (468)
219 COG3629 DnrI DNA-binding trans 95.9 0.12 2.7E-06 41.8 10.0 76 255-330 154-236 (280)
220 PLN03098 LPA1 LOW PSII ACCUMUL 95.8 0.14 3.1E-06 44.1 10.3 65 7-74 72-140 (453)
221 KOG3941 Intermediate in Toll s 95.7 0.26 5.6E-06 39.6 10.8 115 116-246 66-186 (406)
222 PF04053 Coatomer_WDAD: Coatom 95.7 0.42 9E-06 42.0 13.3 161 85-281 269-429 (443)
223 PF13525 YfiO: Outer membrane 95.7 0.74 1.6E-05 35.9 19.1 178 84-306 12-198 (203)
224 smart00299 CLH Clathrin heavy 95.7 0.53 1.1E-05 34.1 13.2 126 186-332 10-136 (140)
225 PF09205 DUF1955: Domain of un 95.5 0.56 1.2E-05 33.1 11.7 117 21-147 13-150 (161)
226 PRK15331 chaperone protein Sic 95.5 0.19 4E-06 37.1 8.6 89 122-211 42-133 (165)
227 smart00299 CLH Clathrin heavy 95.4 0.67 1.4E-05 33.5 14.6 87 12-103 9-95 (140)
228 PLN03098 LPA1 LOW PSII ACCUMUL 95.4 0.19 4.2E-06 43.4 9.7 62 78-146 76-141 (453)
229 COG1729 Uncharacterized protei 95.3 0.26 5.7E-06 39.4 9.6 97 80-180 145-243 (262)
230 KOG2610 Uncharacterized conser 95.2 0.65 1.4E-05 38.4 11.7 148 22-177 115-272 (491)
231 COG1729 Uncharacterized protei 95.2 0.47 1E-05 38.0 10.7 64 80-146 181-244 (262)
232 PF08631 SPO22: Meiosis protei 95.2 1.5 3.3E-05 36.1 21.8 100 118-218 85-192 (278)
233 COG5107 RNA14 Pre-mRNA 3'-end 95.1 2 4.4E-05 37.2 16.0 142 79-229 399-546 (660)
234 KOG0543 FKBP-type peptidyl-pro 95.0 0.39 8.4E-06 40.7 10.1 105 53-164 215-337 (397)
235 COG3898 Uncharacterized membra 94.8 2.2 4.7E-05 36.3 24.6 239 60-313 98-390 (531)
236 KOG2280 Vacuolar assembly/sort 94.8 3.3 7.1E-05 38.3 17.0 119 147-281 679-797 (829)
237 KOG0550 Molecular chaperone (D 94.8 1.9 4E-05 36.9 13.5 153 160-315 177-350 (486)
238 PF13512 TPR_18: Tetratricopep 94.7 1.1 2.4E-05 32.3 10.5 79 12-91 13-96 (142)
239 KOG1464 COP9 signalosome, subu 94.6 1.9 4.2E-05 34.6 14.3 127 83-209 71-217 (440)
240 KOG1538 Uncharacterized conser 94.6 3.1 6.7E-05 37.9 14.9 188 2-213 627-847 (1081)
241 KOG1920 IkappaB kinase complex 94.6 4.2 9.1E-05 39.7 16.6 30 43-73 788-819 (1265)
242 PF09205 DUF1955: Domain of un 94.5 1.1 2.5E-05 31.6 11.6 63 256-318 88-152 (161)
243 KOG1585 Protein required for f 94.4 0.53 1.1E-05 37.1 8.9 165 26-206 74-250 (308)
244 PF13176 TPR_7: Tetratricopept 94.4 0.13 2.7E-06 27.1 4.2 26 288-313 1-26 (36)
245 PF09613 HrpB1_HrpK: Bacterial 94.4 1 2.2E-05 33.1 10.0 49 58-106 22-73 (160)
246 PF02259 FAT: FAT domain; Int 94.4 2.9 6.3E-05 35.6 16.4 63 252-314 144-212 (352)
247 PF13428 TPR_14: Tetratricopep 94.4 0.17 3.6E-06 28.1 4.8 28 79-106 3-30 (44)
248 COG3118 Thioredoxin domain-con 94.2 2.5 5.5E-05 34.5 14.3 19 88-106 145-163 (304)
249 PF13170 DUF4003: Protein of u 94.2 2.8 6E-05 34.8 16.4 127 132-260 77-223 (297)
250 COG3629 DnrI DNA-binding trans 94.2 0.56 1.2E-05 38.1 9.2 75 80-160 156-235 (280)
251 PF13428 TPR_14: Tetratricopep 94.1 0.24 5.1E-06 27.5 5.1 39 11-51 2-40 (44)
252 KOG0543 FKBP-type peptidyl-pro 94.1 1.6 3.4E-05 37.2 11.6 22 85-106 216-237 (397)
253 PF13170 DUF4003: Protein of u 93.9 2.1 4.5E-05 35.5 12.2 127 25-158 77-223 (297)
254 PF10602 RPN7: 26S proteasome 93.9 0.85 1.8E-05 34.6 9.2 63 79-144 38-100 (177)
255 KOG4555 TPR repeat-containing 93.5 1.7 3.6E-05 30.8 9.1 91 55-147 52-145 (175)
256 PF07035 Mic1: Colon cancer-as 93.5 2.4 5.1E-05 31.7 15.4 54 30-84 14-67 (167)
257 PF04184 ST7: ST7 protein; In 93.4 5.2 0.00011 35.3 15.0 55 157-211 264-323 (539)
258 PF10602 RPN7: 26S proteasome 93.4 1 2.2E-05 34.2 8.8 58 154-211 38-101 (177)
259 PF00637 Clathrin: Region in C 93.3 0.037 8E-07 40.3 1.0 90 13-106 10-99 (143)
260 PF13762 MNE1: Mitochondrial s 93.2 2.3 5E-05 30.8 10.0 93 243-335 26-129 (145)
261 PF13512 TPR_18: Tetratricopep 93.2 2.3 5.1E-05 30.7 10.0 75 87-164 20-94 (142)
262 COG3947 Response regulator con 93.2 4 8.6E-05 33.3 14.3 70 256-325 281-357 (361)
263 COG4105 ComL DNA uptake lipopr 93.1 3.7 8E-05 32.8 17.4 54 158-211 173-232 (254)
264 PF04184 ST7: ST7 protein; In 93.1 5.8 0.00013 35.0 13.9 79 258-336 263-346 (539)
265 KOG2066 Vacuolar assembly/sort 93.1 7.5 0.00016 36.3 19.7 155 17-183 363-536 (846)
266 PF08631 SPO22: Meiosis protei 93.0 4.5 9.7E-05 33.3 22.4 218 88-311 4-271 (278)
267 KOG4555 TPR repeat-containing 92.8 2.5 5.4E-05 29.9 9.3 55 86-146 52-106 (175)
268 PF13176 TPR_7: Tetratricopept 92.8 0.26 5.6E-06 25.9 3.6 25 80-104 2-26 (36)
269 COG3118 Thioredoxin domain-con 92.5 5.1 0.00011 32.8 14.3 119 125-247 142-265 (304)
270 PF00637 Clathrin: Region in C 92.1 0.1 2.2E-06 38.0 2.0 86 123-211 13-98 (143)
271 COG4105 ComL DNA uptake lipopr 91.6 6.1 0.00013 31.6 16.7 123 87-212 44-196 (254)
272 KOG2114 Vacuolar assembly/sort 91.5 13 0.00027 35.2 15.4 18 264-281 500-517 (933)
273 PF07079 DUF1347: Protein of u 91.5 9 0.00019 33.5 21.0 72 241-314 247-326 (549)
274 PF13374 TPR_10: Tetratricopep 91.1 0.74 1.6E-05 24.7 4.5 28 287-314 3-30 (42)
275 PF07035 Mic1: Colon cancer-as 91.1 5.1 0.00011 29.9 13.0 124 114-248 26-149 (167)
276 KOG2041 WD40 repeat protein [G 91.0 13 0.00028 34.5 18.3 142 43-208 689-847 (1189)
277 KOG1585 Protein required for f 91.0 6.8 0.00015 31.2 17.0 202 80-309 34-250 (308)
278 COG5107 RNA14 Pre-mRNA 3'-end 91.0 10 0.00022 33.2 22.9 143 182-329 396-543 (660)
279 KOG2610 Uncharacterized conser 90.8 8.9 0.00019 32.1 14.7 149 58-210 115-274 (491)
280 PF13929 mRNA_stabil: mRNA sta 90.5 8.6 0.00019 31.5 21.3 137 198-334 143-291 (292)
281 PRK11906 transcriptional regul 90.3 12 0.00026 32.9 13.9 139 61-207 273-431 (458)
282 COG4649 Uncharacterized protei 90.0 6.6 0.00014 29.5 10.0 128 153-282 60-195 (221)
283 KOG4570 Uncharacterized conser 89.9 0.97 2.1E-05 37.1 5.6 109 211-321 57-170 (418)
284 PRK09687 putative lyase; Provi 89.8 10 0.00022 31.3 25.2 141 180-333 139-279 (280)
285 PRK09687 putative lyase; Provi 89.7 10 0.00023 31.2 27.4 235 44-296 35-277 (280)
286 KOG1941 Acetylcholine receptor 89.6 12 0.00026 31.8 16.7 214 22-236 18-264 (518)
287 KOG1586 Protein required for f 89.5 9 0.0002 30.3 10.5 18 265-282 165-182 (288)
288 TIGR02561 HrpB1_HrpK type III 89.5 6.5 0.00014 28.6 9.4 19 88-106 55-73 (153)
289 KOG4570 Uncharacterized conser 89.5 2.7 5.9E-05 34.6 7.8 97 79-179 66-162 (418)
290 KOG0276 Vesicle coat complex C 89.4 5.7 0.00012 35.9 10.2 39 22-68 598-636 (794)
291 PF11848 DUF3368: Domain of un 89.3 2 4.4E-05 24.4 5.2 37 295-331 11-47 (48)
292 PF13431 TPR_17: Tetratricopep 89.2 0.58 1.3E-05 24.2 2.7 21 151-171 12-32 (34)
293 cd00923 Cyt_c_Oxidase_Va Cytoc 89.1 2 4.3E-05 28.5 5.5 61 25-86 22-85 (103)
294 PF00515 TPR_1: Tetratricopept 89.0 1.6 3.5E-05 22.2 4.5 29 287-315 2-30 (34)
295 PF00515 TPR_1: Tetratricopept 88.9 1.2 2.7E-05 22.6 4.0 28 79-106 3-30 (34)
296 PF10366 Vps39_1: Vacuolar sor 88.8 3.5 7.5E-05 28.3 7.0 27 288-314 41-67 (108)
297 PF02284 COX5A: Cytochrome c o 88.5 1.3 2.9E-05 29.6 4.5 76 11-87 9-89 (108)
298 PF07719 TPR_2: Tetratricopept 87.8 1.6 3.5E-05 22.1 4.0 27 80-106 4-30 (34)
299 PF13374 TPR_10: Tetratricopep 87.7 1.3 2.8E-05 23.7 3.8 28 184-211 3-30 (42)
300 COG3898 Uncharacterized membra 87.5 17 0.00038 31.2 23.5 247 23-284 133-393 (531)
301 PF02284 COX5A: Cytochrome c o 87.4 2.5 5.5E-05 28.3 5.3 57 238-294 29-87 (108)
302 PF13431 TPR_17: Tetratricopep 87.2 0.74 1.6E-05 23.8 2.3 24 114-137 10-33 (34)
303 TIGR03504 FimV_Cterm FimV C-te 87.2 2.3 5.1E-05 23.6 4.4 23 293-315 6-28 (44)
304 cd00923 Cyt_c_Oxidase_Va Cytoc 87.0 4.1 8.9E-05 27.1 6.0 56 238-293 26-83 (103)
305 PF13929 mRNA_stabil: mRNA sta 87.0 16 0.00034 30.0 12.4 95 114-208 161-263 (292)
306 PF07719 TPR_2: Tetratricopept 86.8 2.6 5.7E-05 21.2 4.5 28 288-315 3-30 (34)
307 COG0457 NrfG FOG: TPR repeat [ 86.8 13 0.00027 28.7 20.4 215 23-247 36-264 (291)
308 KOG0890 Protein kinase of the 86.5 52 0.0011 35.5 24.0 291 15-316 1388-1732(2382)
309 PF13174 TPR_6: Tetratricopept 86.2 1 2.2E-05 22.6 2.6 24 83-106 6-29 (33)
310 PF07163 Pex26: Pex26 protein; 85.9 11 0.00023 30.8 9.0 89 82-175 88-181 (309)
311 PRK11906 transcriptional regul 85.4 25 0.00055 31.0 14.8 161 11-178 252-433 (458)
312 COG3947 Response regulator con 85.4 9.2 0.0002 31.3 8.4 69 80-154 282-355 (361)
313 PF11207 DUF2989: Protein of u 85.3 6.4 0.00014 30.3 7.3 46 126-171 149-197 (203)
314 PF07721 TPR_4: Tetratricopept 85.3 1.6 3.4E-05 20.9 2.8 20 291-310 6-25 (26)
315 PF14689 SPOB_a: Sensor_kinase 84.7 4.5 9.8E-05 24.4 5.2 46 269-314 5-51 (62)
316 PF14669 Asp_Glu_race_2: Putat 84.3 16 0.00036 27.9 14.2 159 3-177 1-206 (233)
317 TIGR02508 type_III_yscG type I 84.1 10 0.00022 25.4 8.6 87 24-122 19-107 (115)
318 KOG1941 Acetylcholine receptor 83.8 26 0.00057 29.8 13.2 129 81-209 126-272 (518)
319 PF13181 TPR_8: Tetratricopept 83.5 4.2 9.1E-05 20.5 4.3 27 288-314 3-29 (34)
320 KOG1920 IkappaB kinase complex 83.1 53 0.0011 32.8 20.8 27 79-105 791-820 (1265)
321 PF11846 DUF3366: Domain of un 82.2 4.9 0.00011 30.9 5.9 33 74-106 141-173 (193)
322 TIGR02561 HrpB1_HrpK type III 81.8 18 0.00038 26.5 10.7 66 20-90 20-89 (153)
323 PRK15180 Vi polysaccharide bio 81.7 12 0.00026 33.0 8.3 123 17-147 296-421 (831)
324 PF13181 TPR_8: Tetratricopept 81.4 4 8.8E-05 20.6 3.7 28 79-106 3-30 (34)
325 COG4455 ImpE Protein of avirul 81.4 10 0.00023 29.6 7.0 52 124-176 8-59 (273)
326 cd08819 CARD_MDA5_2 Caspase ac 81.2 12 0.00027 24.3 6.8 67 28-97 20-86 (88)
327 KOG0550 Molecular chaperone (D 80.5 38 0.00083 29.4 19.0 244 44-308 166-436 (486)
328 TIGR03504 FimV_Cterm FimV C-te 79.7 4.3 9.3E-05 22.5 3.4 25 189-213 5-29 (44)
329 PF09613 HrpB1_HrpK: Bacterial 79.3 23 0.0005 26.2 11.9 16 195-210 56-71 (160)
330 PRK10564 maltose regulon perip 79.1 5 0.00011 33.0 5.0 43 287-329 258-300 (303)
331 KOG1464 COP9 signalosome, subu 78.8 34 0.00074 27.9 12.5 165 167-332 42-237 (440)
332 PF13762 MNE1: Mitochondrial s 78.0 24 0.00052 25.7 11.5 76 155-230 42-127 (145)
333 COG2976 Uncharacterized protei 77.7 30 0.00065 26.7 10.9 91 123-213 95-189 (207)
334 KOG4234 TPR repeat-containing 77.6 30 0.00064 26.9 8.3 20 192-211 177-196 (271)
335 KOG4648 Uncharacterized conser 77.6 16 0.00035 30.7 7.5 86 55-146 106-194 (536)
336 PF11846 DUF3366: Domain of un 77.4 18 0.00038 27.9 7.7 32 283-314 141-172 (193)
337 PF11207 DUF2989: Protein of u 76.0 26 0.00056 27.1 7.8 75 228-305 117-197 (203)
338 cd08819 CARD_MDA5_2 Caspase ac 75.9 19 0.00041 23.5 6.8 38 164-202 48-85 (88)
339 KOG2114 Vacuolar assembly/sort 75.8 77 0.0017 30.4 20.9 78 18-102 376-456 (933)
340 KOG0276 Vesicle coat complex C 75.6 38 0.00082 31.1 9.6 133 12-179 616-748 (794)
341 COG1747 Uncharacterized N-term 74.9 64 0.0014 29.1 20.6 181 78-296 67-249 (711)
342 COG5159 RPN6 26S proteasome re 73.8 50 0.0011 27.2 12.3 19 291-309 130-148 (421)
343 KOG2034 Vacuolar sorting prote 73.2 92 0.002 30.1 13.7 171 124-311 365-555 (911)
344 PF07575 Nucleopor_Nup85: Nup8 72.4 69 0.0015 29.7 11.2 129 182-329 404-538 (566)
345 PF07163 Pex26: Pex26 protein; 72.4 39 0.00085 27.7 8.2 86 13-100 86-181 (309)
346 PF14689 SPOB_a: Sensor_kinase 72.3 19 0.00041 21.7 5.6 24 120-143 26-49 (62)
347 COG4455 ImpE Protein of avirul 72.2 32 0.00069 27.1 7.4 56 82-143 6-61 (273)
348 COG0457 NrfG FOG: TPR repeat [ 71.4 43 0.00094 25.6 25.6 147 60-211 37-195 (291)
349 PF11663 Toxin_YhaV: Toxin wit 71.4 4.8 0.0001 28.6 2.7 34 297-332 106-139 (140)
350 PF11848 DUF3368: Domain of un 71.2 16 0.00035 20.6 4.6 37 18-55 10-46 (48)
351 PF11663 Toxin_YhaV: Toxin wit 71.2 5.6 0.00012 28.3 3.0 32 195-228 107-138 (140)
352 PF10579 Rapsyn_N: Rapsyn N-te 70.8 9.5 0.0002 24.3 3.7 17 187-203 47-63 (80)
353 KOG4648 Uncharacterized conser 70.8 12 0.00026 31.4 5.3 53 86-144 106-158 (536)
354 COG4649 Uncharacterized protei 70.5 44 0.00096 25.3 13.1 133 79-216 61-200 (221)
355 PF10579 Rapsyn_N: Rapsyn N-te 70.5 19 0.00041 23.0 5.0 47 89-139 18-65 (80)
356 smart00028 TPR Tetratricopepti 70.2 9 0.00019 18.0 3.2 27 288-314 3-29 (34)
357 KOG4567 GTPase-activating prot 69.1 42 0.00091 27.9 7.8 72 238-311 262-343 (370)
358 PF02259 FAT: FAT domain; Int 69.0 71 0.0015 27.1 23.2 185 16-212 4-213 (352)
359 PRK15180 Vi polysaccharide bio 68.5 88 0.0019 28.0 13.3 122 84-212 296-420 (831)
360 PF10366 Vps39_1: Vacuolar sor 68.4 35 0.00077 23.4 8.3 27 185-211 41-67 (108)
361 COG5187 RPN7 26S proteasome re 68.2 68 0.0015 26.5 12.8 98 79-179 117-219 (412)
362 KOG0991 Replication factor C, 68.0 61 0.0013 26.0 12.7 100 227-331 168-282 (333)
363 COG0735 Fur Fe2+/Zn2+ uptake r 67.9 16 0.00035 26.6 5.0 55 4-60 15-69 (145)
364 KOG4077 Cytochrome c oxidase, 67.6 21 0.00045 25.2 5.1 69 4-74 42-112 (149)
365 PF13934 ELYS: Nuclear pore co 67.0 63 0.0014 25.7 9.3 124 185-321 78-204 (226)
366 PRK10564 maltose regulon perip 66.1 13 0.00028 30.7 4.6 40 186-225 260-299 (303)
367 PHA02875 ankyrin repeat protei 65.9 93 0.002 27.3 12.9 212 17-254 6-230 (413)
368 COG5108 RPO41 Mitochondrial DN 65.9 46 0.00099 31.0 8.1 44 259-302 33-81 (1117)
369 PF10475 DUF2450: Protein of u 65.6 79 0.0017 26.3 10.2 52 158-211 104-155 (291)
370 KOG3677 RNA polymerase I-assoc 65.2 81 0.0017 27.6 9.0 61 119-179 237-299 (525)
371 KOG4507 Uncharacterized conser 65.2 63 0.0014 29.7 8.7 146 43-194 568-721 (886)
372 cd00280 TRFH Telomeric Repeat 63.8 21 0.00046 27.1 4.9 44 259-302 116-159 (200)
373 cd00280 TRFH Telomeric Repeat 62.7 60 0.0013 24.8 7.0 46 270-315 85-140 (200)
374 cd07153 Fur_like Ferric uptake 62.6 23 0.00049 24.5 4.9 45 292-336 6-50 (116)
375 PF02847 MA3: MA3 domain; Int 62.2 37 0.0008 23.2 5.9 21 189-209 8-28 (113)
376 PRK11639 zinc uptake transcrip 61.8 17 0.00038 27.3 4.4 57 36-94 17-77 (169)
377 PF01475 FUR: Ferric uptake re 61.5 19 0.00042 25.1 4.4 46 291-336 12-57 (120)
378 PF10475 DUF2450: Protein of u 61.3 96 0.0021 25.8 10.1 116 123-247 104-226 (291)
379 cd08326 CARD_CASP9 Caspase act 61.2 25 0.00055 22.8 4.5 63 29-96 18-80 (84)
380 TIGR02508 type_III_yscG type I 61.2 48 0.0011 22.4 8.7 84 238-326 24-107 (115)
381 PF12926 MOZART2: Mitotic-spin 61.2 43 0.00093 21.8 7.5 63 8-73 8-70 (88)
382 KOG1550 Extracellular protein 60.9 1.4E+02 0.003 27.6 20.3 179 26-214 228-428 (552)
383 COG0735 Fur Fe2+/Zn2+ uptake r 60.3 24 0.00053 25.7 4.8 43 293-335 27-69 (145)
384 KOG0686 COP9 signalosome, subu 60.3 1.2E+02 0.0026 26.6 12.6 55 155-209 153-213 (466)
385 PF10255 Paf67: RNA polymerase 59.9 60 0.0013 28.4 7.7 21 83-103 128-148 (404)
386 PRK14958 DNA polymerase III su 59.6 1.4E+02 0.0031 27.3 11.1 34 287-321 247-280 (509)
387 KOG2908 26S proteasome regulat 59.3 1.1E+02 0.0024 26.0 9.1 64 259-322 80-156 (380)
388 KOG0686 COP9 signalosome, subu 59.2 1.2E+02 0.0027 26.4 14.8 28 253-282 305-332 (466)
389 PRK09462 fur ferric uptake reg 58.4 33 0.00071 25.1 5.3 58 3-62 10-68 (148)
390 PF04097 Nic96: Nup93/Nic96; 58.4 1.6E+02 0.0036 27.6 16.6 49 9-59 110-158 (613)
391 PF07575 Nucleopor_Nup85: Nup8 58.4 25 0.00054 32.5 5.6 23 197-219 509-531 (566)
392 PF06552 TOM20_plant: Plant sp 57.3 84 0.0018 24.0 9.6 110 26-150 7-140 (186)
393 cd08326 CARD_CASP9 Caspase act 57.2 51 0.0011 21.4 6.7 62 137-202 19-80 (84)
394 COG2976 Uncharacterized protei 57.2 90 0.0019 24.2 13.8 52 126-179 135-186 (207)
395 PF13934 ELYS: Nuclear pore co 56.0 1E+02 0.0022 24.5 9.9 106 41-163 74-183 (226)
396 PRK08691 DNA polymerase III su 55.9 1.7E+02 0.0037 27.9 10.3 32 289-321 249-280 (709)
397 PF10255 Paf67: RNA polymerase 55.9 1.2E+02 0.0026 26.6 8.9 60 47-106 123-193 (404)
398 PF09454 Vps23_core: Vps23 cor 55.9 36 0.00078 20.8 4.2 53 6-60 4-56 (65)
399 COG2405 Predicted nucleic acid 55.6 31 0.00067 24.8 4.3 59 271-331 96-154 (157)
400 COG5187 RPN7 26S proteasome re 55.6 1.2E+02 0.0026 25.2 8.7 96 218-315 115-221 (412)
401 PF14853 Fis1_TPR_C: Fis1 C-te 54.5 41 0.0009 19.5 5.0 24 83-106 7-30 (53)
402 PF02607 B12-binding_2: B12 bi 54.3 34 0.00074 21.5 4.3 38 298-335 13-50 (79)
403 PF02847 MA3: MA3 domain; Int 54.1 68 0.0015 21.9 7.0 21 83-103 8-28 (113)
404 PF08314 Sec39: Secretory path 53.8 62 0.0013 31.0 7.6 162 114-283 429-625 (715)
405 PF08424 NRDE-2: NRDE-2, neces 53.2 1.4E+02 0.003 25.3 12.6 114 94-214 48-185 (321)
406 TIGR02270 conserved hypothetic 53.0 1.6E+02 0.0035 26.0 23.6 39 272-312 240-278 (410)
407 PF11817 Foie-gras_1: Foie gra 52.9 54 0.0012 26.5 6.2 57 257-313 181-245 (247)
408 KOG4507 Uncharacterized conser 52.1 96 0.0021 28.6 7.7 98 59-163 620-721 (886)
409 PF08311 Mad3_BUB1_I: Mad3/BUB 51.9 83 0.0018 22.3 8.2 43 95-141 81-123 (126)
410 PF04190 DUF410: Protein of un 51.8 1.3E+02 0.0029 24.5 12.8 63 253-315 89-170 (260)
411 KOG2066 Vacuolar assembly/sort 51.5 2.3E+02 0.005 27.2 20.8 74 11-89 393-467 (846)
412 KOG4567 GTPase-activating prot 50.4 1E+02 0.0022 25.8 7.0 70 30-101 263-342 (370)
413 PF12862 Apc5: Anaphase-promot 50.3 72 0.0016 21.0 6.2 56 88-145 9-69 (94)
414 COG1747 Uncharacterized N-term 50.0 2E+02 0.0044 26.2 20.0 158 151-315 65-234 (711)
415 PF11768 DUF3312: Protein of u 50.0 70 0.0015 29.0 6.6 117 189-322 414-530 (545)
416 PRK14963 DNA polymerase III su 49.9 2.1E+02 0.0045 26.2 10.4 73 245-320 188-275 (504)
417 PF11838 ERAP1_C: ERAP1-like C 49.3 1.6E+02 0.0034 24.7 16.0 61 254-314 169-229 (324)
418 KOG4077 Cytochrome c oxidase, 49.2 94 0.002 22.1 8.6 46 238-283 68-113 (149)
419 PRK11639 zinc uptake transcrip 48.9 39 0.00086 25.4 4.5 41 241-282 13-53 (169)
420 KOG4234 TPR repeat-containing 48.8 1.3E+02 0.0028 23.6 8.8 85 57-147 106-198 (271)
421 smart00544 MA3 Domain in DAP-5 48.4 86 0.0019 21.4 9.1 22 189-210 8-29 (113)
422 PF10155 DUF2363: Uncharacteri 48.2 98 0.0021 22.0 11.9 111 169-281 6-125 (126)
423 PRK13342 recombination factor 48.1 2E+02 0.0043 25.5 15.2 70 186-255 230-306 (413)
424 PHA02875 ankyrin repeat protei 48.0 1.5E+02 0.0033 26.0 8.7 201 97-322 15-231 (413)
425 PF11123 DNA_Packaging_2: DNA 47.9 68 0.0015 20.1 4.8 31 269-299 12-44 (82)
426 smart00386 HAT HAT (Half-A-TPR 47.5 34 0.00073 16.5 3.9 29 24-54 1-29 (33)
427 KOG1258 mRNA processing protei 47.3 2.3E+02 0.0051 26.1 22.2 273 21-306 90-420 (577)
428 KOG2063 Vacuolar assembly/sort 47.3 2.9E+02 0.0063 27.2 19.3 36 129-164 603-638 (877)
429 PF12069 DUF3549: Protein of u 47.2 1.8E+02 0.004 24.8 15.8 184 109-297 118-309 (340)
430 PF14561 TPR_20: Tetratricopep 46.7 82 0.0018 20.7 7.6 29 253-281 21-49 (90)
431 PF04190 DUF410: Protein of un 46.3 1.6E+02 0.0035 24.0 15.2 28 151-178 89-116 (260)
432 COG4785 NlpI Lipoprotein NlpI, 46.1 1.5E+02 0.0033 23.6 16.5 28 184-211 238-265 (297)
433 PF07218 RAP1: Rhoptry-associa 46.0 2.4E+02 0.0052 25.8 11.8 135 161-315 587-758 (782)
434 KOG1586 Protein required for f 46.0 1.6E+02 0.0034 23.8 11.6 21 160-180 162-182 (288)
435 PRK14956 DNA polymerase III su 45.6 2.4E+02 0.0051 25.6 11.0 35 288-322 250-284 (484)
436 KOG4279 Serine/threonine prote 45.4 2.6E+02 0.0056 26.9 9.4 172 26-212 179-395 (1226)
437 PF13646 HEAT_2: HEAT repeats; 45.3 79 0.0017 20.1 6.6 60 44-104 12-71 (88)
438 cd07153 Fur_like Ferric uptake 45.1 76 0.0017 21.8 5.2 49 15-64 5-53 (116)
439 KOG2297 Predicted translation 44.7 1.9E+02 0.0041 24.3 19.4 74 192-274 264-341 (412)
440 smart00638 LPD_N Lipoprotein N 44.6 2.6E+02 0.0057 26.0 22.5 61 44-106 308-369 (574)
441 TIGR02270 conserved hypothetic 43.7 2.3E+02 0.0051 25.1 24.0 236 17-282 45-280 (410)
442 PF01475 FUR: Ferric uptake re 43.6 74 0.0016 22.1 5.0 50 14-64 11-60 (120)
443 KOG0545 Aryl-hydrocarbon recep 43.2 1.8E+02 0.0039 23.6 8.0 88 54-147 186-294 (329)
444 PF11817 Foie-gras_1: Foie gra 42.9 1.4E+02 0.003 24.1 7.1 57 154-210 180-245 (247)
445 PF02184 HAT: HAT (Half-A-TPR) 42.6 33 0.00071 17.5 2.1 20 270-289 3-23 (32)
446 PRK13800 putative oxidoreducta 42.4 3.6E+02 0.0079 26.9 23.2 127 179-313 752-879 (897)
447 PRK14951 DNA polymerase III su 41.9 3.1E+02 0.0067 25.9 10.5 32 289-321 254-285 (618)
448 KOG1258 mRNA processing protei 41.7 2.9E+02 0.0063 25.6 25.8 326 5-335 108-489 (577)
449 COG5108 RPO41 Mitochondrial DN 41.3 1.7E+02 0.0037 27.6 7.7 91 51-145 33-131 (1117)
450 TIGR01503 MthylAspMut_E methyl 40.7 1.9E+02 0.0042 25.8 7.7 123 131-260 68-217 (480)
451 PF09670 Cas_Cas02710: CRISPR- 40.7 2.5E+02 0.0054 24.5 9.8 119 17-145 138-269 (379)
452 PF09477 Type_III_YscG: Bacter 40.3 1.2E+02 0.0026 20.9 9.7 81 23-107 19-99 (116)
453 PF09454 Vps23_core: Vps23 cor 39.8 89 0.0019 19.1 5.0 50 114-164 5-54 (65)
454 PF12862 Apc5: Anaphase-promot 39.5 1.1E+02 0.0024 20.1 6.5 66 265-330 9-86 (94)
455 PRK09462 fur ferric uptake reg 38.7 86 0.0019 22.9 4.9 37 245-282 8-45 (148)
456 cd08332 CARD_CASP2 Caspase act 37.6 1.2E+02 0.0026 20.0 7.2 58 137-198 23-80 (90)
457 PF10155 DUF2363: Uncharacteri 37.2 1.5E+02 0.0033 21.0 12.3 94 80-179 21-125 (126)
458 KOG0687 26S proteasome regulat 36.9 2.7E+02 0.0058 23.8 10.5 142 31-179 55-208 (393)
459 PF09868 DUF2095: Uncharacteri 36.8 1.4E+02 0.0031 20.7 5.2 25 15-39 66-90 (128)
460 COG2178 Predicted RNA-binding 36.8 2E+02 0.0042 22.4 6.3 18 265-282 132-149 (204)
461 TIGR01529 argR_whole arginine 36.2 82 0.0018 23.0 4.3 40 292-331 6-45 (146)
462 PF04034 DUF367: Domain of unk 36.2 1.6E+02 0.0034 21.0 6.5 58 255-312 67-125 (127)
463 PRK14971 DNA polymerase III su 36.1 3.8E+02 0.0082 25.3 10.6 30 291-321 253-282 (614)
464 KOG2908 26S proteasome regulat 35.8 2.8E+02 0.0061 23.7 9.7 90 80-171 78-176 (380)
465 PF08311 Mad3_BUB1_I: Mad3/BUB 35.3 1.6E+02 0.0035 20.8 11.0 43 135-177 81-124 (126)
466 TIGR01914 cas_Csa4 CRISPR-asso 35.2 2.1E+02 0.0045 24.3 6.8 27 238-264 325-351 (354)
467 PF09986 DUF2225: Uncharacteri 34.9 1.7E+02 0.0036 23.1 6.1 30 119-148 167-196 (214)
468 KOG0991 Replication factor C, 34.8 2.5E+02 0.0053 22.8 10.0 78 138-218 180-273 (333)
469 PRK11619 lytic murein transgly 34.3 4.2E+02 0.0091 25.3 24.7 115 196-313 254-373 (644)
470 PRK13800 putative oxidoreducta 34.0 4.9E+02 0.011 26.0 24.1 224 65-312 623-846 (897)
471 TIGR02397 dnaX_nterm DNA polym 33.5 3E+02 0.0066 23.4 11.5 19 300-318 257-275 (355)
472 PF04034 DUF367: Domain of unk 32.4 1.9E+02 0.004 20.6 5.8 80 24-103 29-125 (127)
473 PF04762 IKI3: IKI3 family; I 31.9 5.4E+02 0.012 25.9 12.2 200 51-268 699-928 (928)
474 PRK06645 DNA polymerase III su 31.8 4.1E+02 0.0089 24.4 10.2 31 291-322 263-293 (507)
475 PF00382 TFIIB: Transcription 31.7 1.3E+02 0.0028 18.5 4.3 35 303-337 16-54 (71)
476 cd08315 Death_TRAILR_DR4_DR5 D 31.4 1.6E+02 0.0035 19.7 5.6 48 270-317 47-95 (96)
477 smart00544 MA3 Domain in DAP-5 30.4 1.8E+02 0.0039 19.8 9.6 13 224-236 8-20 (113)
478 PRK11619 lytic murein transgly 30.3 4.9E+02 0.011 24.8 18.9 116 23-144 254-373 (644)
479 PF14162 YozD: YozD-like prote 30.2 1.1E+02 0.0025 17.5 3.7 29 304-332 13-49 (57)
480 PF02607 B12-binding_2: B12 bi 30.0 1.2E+02 0.0027 18.9 4.0 39 129-167 13-51 (79)
481 PF04090 RNA_pol_I_TF: RNA pol 29.7 2.7E+02 0.0059 21.7 9.4 28 12-39 43-70 (199)
482 PF14669 Asp_Glu_race_2: Putat 29.1 2.8E+02 0.006 21.6 15.9 172 114-311 5-206 (233)
483 cd08810 CARD_BCL10 Caspase act 28.8 1.6E+02 0.0036 19.1 4.3 57 29-91 18-74 (84)
484 PF08542 Rep_fac_C: Replicatio 28.8 1.6E+02 0.0036 18.9 4.6 28 255-283 6-33 (89)
485 KOG4279 Serine/threonine prote 28.6 5.6E+02 0.012 24.9 12.4 48 97-146 183-230 (1226)
486 smart00804 TAP_C C-terminal do 28.4 77 0.0017 19.2 2.6 18 301-318 40-57 (63)
487 PRK14953 DNA polymerase III su 28.3 4.6E+02 0.01 23.9 10.9 22 299-320 258-279 (486)
488 COG2405 Predicted nucleic acid 28.1 1.6E+02 0.0034 21.4 4.3 39 16-55 115-153 (157)
489 KOG2659 LisH motif-containing 28.1 3.1E+02 0.0068 21.9 8.9 21 53-73 71-91 (228)
490 PF09477 Type_III_YscG: Bacter 28.1 2.1E+02 0.0045 19.8 9.2 74 238-316 25-99 (116)
491 TIGR03184 DNA_S_dndE DNA sulfu 27.8 2E+02 0.0044 19.6 6.1 93 27-131 5-98 (105)
492 PF01347 Vitellogenin_N: Lipop 27.6 5.2E+02 0.011 24.3 16.4 202 135-337 322-554 (618)
493 PF15297 CKAP2_C: Cytoskeleton 27.3 4E+02 0.0088 22.9 9.2 65 92-163 118-186 (353)
494 PF09868 DUF2095: Uncharacteri 27.3 2.2E+02 0.0047 19.8 5.3 22 261-282 68-89 (128)
495 PRK09169 hypothetical protein; 27.2 9.3E+02 0.02 27.1 28.9 328 8-336 160-555 (2316)
496 PRK10941 hypothetical protein; 27.2 3.6E+02 0.0078 22.3 9.5 57 121-178 185-241 (269)
497 KOG4414 COP9 signalosome, subu 27.2 2.5E+02 0.0054 20.4 6.5 30 150-179 37-66 (197)
498 PF11838 ERAP1_C: ERAP1-like C 27.0 3.7E+02 0.0081 22.4 16.2 59 154-212 171-230 (324)
499 KOG0890 Protein kinase of the 26.6 9.6E+02 0.021 27.0 14.2 115 82-209 1388-1509(2382)
500 PF12554 MOZART1: Mitotic-spin 26.4 1.3E+02 0.0029 17.1 3.2 26 295-320 13-38 (48)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=9.3e-60 Score=431.54 Aligned_cols=325 Identities=29% Similarity=0.492 Sum_probs=318.2
Q ss_pred CCCCCcchhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCcCCcccHHHHH
Q 044786 5 CLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMI 84 (340)
Q Consensus 5 g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li 84 (340)
+..||..+|+.++.+|++.++++.+.+++..|.+. |+.||..+||.++.+|++.|++++|.++|++|.+||..+||.+|
T Consensus 118 ~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~-g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li 196 (697)
T PLN03081 118 PFTLPASTYDALVEACIALKSIRCVKAVYWHVESS-GFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTII 196 (697)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh-CCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHH
Confidence 57899999999999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 044786 85 VGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164 (340)
Q Consensus 85 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 164 (340)
.+|++.|++++|+++|++|.+. |+ .|+..+|+.++.+|++.|..+.+.+++..+.+.|+.||..+|++|+++|++
T Consensus 197 ~~~~~~g~~~~A~~lf~~M~~~--g~---~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k 271 (697)
T PLN03081 197 GGLVDAGNYREAFALFREMWED--GS---DAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSK 271 (697)
T ss_pred HHHHHCcCHHHHHHHHHHHHHh--CC---CCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHH
Confidence 9999999999999999999988 55 899999999999999999999999999999999999999999999999999
Q ss_pred hcCHHHHHHHHHHcccCChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCChhhHHHHHHhcccCCchhchHHHHHHH
Q 044786 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHAN 244 (340)
Q Consensus 165 ~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~ 244 (340)
.|++++|.++|++|.++|+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++ +..++..
T Consensus 272 ~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~-a~~i~~~ 350 (697)
T PLN03081 272 CGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEH-AKQAHAG 350 (697)
T ss_pred CCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHH-HHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999977 9999999
Q ss_pred HHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhcCCcHHHHHHHHHHHHHcCchHHHHHHHHHHHHcCCccchhHH
Q 044786 245 IVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLI 324 (340)
Q Consensus 245 ~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~ 324 (340)
+.+.|+.||..+|++||++|+++|++++|.++|++|. +||+.+||+||.+|++.|+.++|+++|++|.+.|+.||..||
T Consensus 351 m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~ 429 (697)
T PLN03081 351 LIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTF 429 (697)
T ss_pred HHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHH
Confidence 9999999999999999999999999999999999997 689999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCcc
Q 044786 325 NDLRIACSSISAS 337 (340)
Q Consensus 325 ~~ll~a~~~~g~~ 337 (340)
+.+|.+|++.|..
T Consensus 430 ~~ll~a~~~~g~~ 442 (697)
T PLN03081 430 LAVLSACRYSGLS 442 (697)
T ss_pred HHHHHHHhcCCcH
Confidence 9999999999865
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=5.9e-59 Score=430.37 Aligned_cols=324 Identities=15% Similarity=0.235 Sum_probs=309.9
Q ss_pred CCcchhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcC----cCCcccHHHH
Q 044786 8 ITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMP----LRDFNSWAVM 83 (340)
Q Consensus 8 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l 83 (340)
||..+|+.+|.+|++.|+++.|.++|+.|.+. |+.||..+|+.||.+|++.|++++|.++|++|. .||..+|+.+
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~-Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaL 513 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEA-GLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGAL 513 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 89999999999999999999999999999999 999999999999999999999999999999998 5799999999
Q ss_pred HHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHH--cCCCCchhHHHHHHHH
Q 044786 84 IVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFK--LGSSRNISLTGSLINF 161 (340)
Q Consensus 84 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~ 161 (340)
|.+|++.|++++|.++|++|.+. |+ .||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|++++.+
T Consensus 514 I~gy~k~G~~eeAl~lf~~M~~~--Gv---~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~a 588 (1060)
T PLN03218 514 IDGCARAGQVAKAFGAYGIMRSK--NV---KPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKA 588 (1060)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHc--CC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Confidence 99999999999999999999988 55 89999999999999999999999999999986 6889999999999999
Q ss_pred HHhhcCHHHHHHHHHHcccC----ChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCChhhHHHHHHhcccCCchhch
Q 044786 162 YGKFRCLEDADFVFSQLKRH----NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC 237 (340)
Q Consensus 162 ~~~~~~~~~a~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~ 237 (340)
|++.|++++|.++|++|.+. +..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++
T Consensus 589 y~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~ee- 667 (1060)
T PLN03218 589 CANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDK- 667 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHH-
Confidence 99999999999999999854 6689999999999999999999999999999999999999999999999999977
Q ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhc---CCcHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Q 044786 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD---KKNIASWNAMLVGYIRNGLYVEATKFLYLMKA 314 (340)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 314 (340)
+..+++.|.+.|+.|+..+|++||.+|+++|++++|.++|++|.. .||..+||.||.+|++.|++++|+++|++|..
T Consensus 668 A~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~ 747 (1060)
T PLN03218 668 AFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKR 747 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999975 58999999999999999999999999999999
Q ss_pred cCCccchhHHHHHHHHhhhcCccc
Q 044786 315 SGIQIQESLINDLRIACSSISASK 338 (340)
Q Consensus 315 ~g~~~~~~t~~~ll~a~~~~g~~~ 338 (340)
.|+.||..||+.+|.+|++.|..+
T Consensus 748 ~Gi~Pd~~Ty~sLL~a~~k~G~le 771 (1060)
T PLN03218 748 LGLCPNTITYSILLVASERKDDAD 771 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHHCCCHH
Confidence 999999999999999999998643
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=9.7e-58 Score=422.31 Aligned_cols=327 Identities=16% Similarity=0.205 Sum_probs=315.1
Q ss_pred CCCCCCCCCcchhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcC----cCC
Q 044786 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMP----LRD 76 (340)
Q Consensus 1 M~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~----~~~ 76 (340)
|.+.|+.||..+|+.+|.+|++.|+++.|.++|+.|.+. |+.||..+|+.+|.+|++.|++++|.++|+.|. .||
T Consensus 463 M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~-Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD 541 (1060)
T PLN03218 463 VQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNA-GVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPD 541 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCC
Confidence 567899999999999999999999999999999999999 999999999999999999999999999999996 578
Q ss_pred cccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHH
Q 044786 77 FNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTG 156 (340)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 156 (340)
..+|+.+|.+|++.|++++|.++|++|...+.|+ .||..+|+.++.+|++.|++++|.++|+.|.+.|+.|+..+|+
T Consensus 542 ~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi---~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tyn 618 (1060)
T PLN03218 542 RVVFNALISACGQSGAVDRAFDVLAEMKAETHPI---DPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYT 618 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCC---CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHH
Confidence 9999999999999999999999999998764466 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCHHHHHHHHHHcc----cCChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCChhhHHHHHHhcccCC
Q 044786 157 SLINFYGKFRCLEDADFVFSQLK----RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVD 232 (340)
Q Consensus 157 ~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~ 232 (340)
.+|.+|++.|++++|.++|++|. .||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|
T Consensus 619 sLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G 698 (1060)
T PLN03218 619 IAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAK 698 (1060)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence 99999999999999999999997 46899999999999999999999999999999999999999999999999999
Q ss_pred chhchHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhc---CCcHHHHHHHHHHHHHcCchHHHHHHH
Q 044786 233 DDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD---KKNIASWNAMLVGYIRNGLYVEATKFL 309 (340)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~ 309 (340)
++++ |..+++.|...|+.||..+|+.||.+|++.|++++|.++|++|.. .||..+|+.+|.+|++.|++++|.+++
T Consensus 699 ~~ee-A~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~ 777 (1060)
T PLN03218 699 NWKK-ALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLL 777 (1060)
T ss_pred CHHH-HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9977 999999999999999999999999999999999999999999986 499999999999999999999999999
Q ss_pred HHHHHcCCccchhHHHHHHHHhh
Q 044786 310 YLMKASGIQIQESLINDLRIACS 332 (340)
Q Consensus 310 ~~m~~~g~~~~~~t~~~ll~a~~ 332 (340)
++|.+.|+.||..+|++++..|.
T Consensus 778 ~~M~k~Gi~pd~~tynsLIglc~ 800 (1060)
T PLN03218 778 SQAKEDGIKPNLVMCRCITGLCL 800 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999997764
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=7.3e-58 Score=428.26 Aligned_cols=327 Identities=25% Similarity=0.420 Sum_probs=318.3
Q ss_pred CCCCCCCCCcchhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCcCCcccH
Q 044786 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSW 80 (340)
Q Consensus 1 M~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 80 (340)
|.+.|+.||..+|+.+|.+|++.|+.+.|.+++..|.+. |+.||..+||.||.+|++.|++++|.++|++|..||..+|
T Consensus 279 M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~-g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~ 357 (857)
T PLN03077 279 MRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKT-GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSW 357 (857)
T ss_pred HHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHh-CCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeH
Confidence 567899999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHH
Q 044786 81 AVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLIN 160 (340)
Q Consensus 81 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 160 (340)
|.+|.+|++.|++++|+++|++|.+. |+ .||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..+|+.|++
T Consensus 358 n~li~~~~~~g~~~~A~~lf~~M~~~--g~---~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~ 432 (857)
T PLN03077 358 TAMISGYEKNGLPDKALETYALMEQD--NV---SPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIE 432 (857)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHh--CC---CCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 99999999999999999999999988 55 89999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCHHHHHHHHHHcccCChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCChhhHHHHHHhcccCCchhchHHH
Q 044786 161 FYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQ 240 (340)
Q Consensus 161 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~ 240 (340)
+|++.|++++|.++|++|.++|.++||.+|.+|++.|+.++|+.+|++|.. +++||..||+.+|.+|++.|.++. +..
T Consensus 433 ~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~-~~~ 510 (857)
T PLN03077 433 MYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMC-GKE 510 (857)
T ss_pred HHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHH-hHH
Confidence 999999999999999999999999999999999999999999999999986 599999999999999999999966 999
Q ss_pred HHHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhcCCcHHHHHHHHHHHHHcCchHHHHHHHHHHHHcCCccc
Q 044786 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQ 320 (340)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~ 320 (340)
++..+.+.|+.++..++|+||++|+++|++++|+++|+++ .||..+||+||.+|++.|+.++|+++|++|.+.|+.||
T Consensus 511 i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd 588 (857)
T PLN03077 511 IHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD 588 (857)
T ss_pred HHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Confidence 9999999999999999999999999999999999999999 89999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhhhcCcc
Q 044786 321 ESLINDLRIACSSISAS 337 (340)
Q Consensus 321 ~~t~~~ll~a~~~~g~~ 337 (340)
..||+.+|.+|++.|..
T Consensus 589 ~~T~~~ll~a~~~~g~v 605 (857)
T PLN03077 589 EVTFISLLCACSRSGMV 605 (857)
T ss_pred cccHHHHHHHHhhcChH
Confidence 99999999999999864
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.7e-57 Score=425.79 Aligned_cols=329 Identities=28% Similarity=0.441 Sum_probs=308.6
Q ss_pred CCCCCCCCCcchhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCcCCcccH
Q 044786 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSW 80 (340)
Q Consensus 1 M~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 80 (340)
|.+.|++||..+|+.++++|+..+++..+.+++..|.+. |+.||..++|.||.+|++.|++++|.++|++|..+|..+|
T Consensus 178 M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~ 256 (857)
T PLN03077 178 MLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRF-GFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISW 256 (857)
T ss_pred HHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHc-CCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchh
Confidence 345577777777777777777777777777777777777 7777788889999999999999999999999999999999
Q ss_pred HHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHH
Q 044786 81 AVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLIN 160 (340)
Q Consensus 81 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 160 (340)
|++|.+|++.|++++|+++|++|... |+ .||..||+.++.+|++.|+++.+.+++..+.+.|+.||..+|++|+.
T Consensus 257 n~li~~~~~~g~~~eAl~lf~~M~~~--g~---~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~ 331 (857)
T PLN03077 257 NAMISGYFENGECLEGLELFFTMREL--SV---DPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQ 331 (857)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHc--CC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHH
Confidence 99999999999999999999999988 56 99999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCHHHHHHHHHHcccCChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCChhhHHHHHHhcccCCchhchHHH
Q 044786 161 FYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQ 240 (340)
Q Consensus 161 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~ 240 (340)
+|++.|++++|.++|++|.++|..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++ +..
T Consensus 332 ~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~-a~~ 410 (857)
T PLN03077 332 MYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDV-GVK 410 (857)
T ss_pred HHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHH-HHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999976 999
Q ss_pred HHHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhcCCcHHHHHHHHHHHHHcCchHHHHHHHHHHHHcCCccc
Q 044786 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQ 320 (340)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~ 320 (340)
+++.+.+.|+.|+..+|++||++|+++|++++|.++|++|. ++|+.+||.+|.+|++.|++++|+++|++|.. ++.||
T Consensus 411 l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd 488 (857)
T PLN03077 411 LHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP-EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPN 488 (857)
T ss_pred HHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCC
Confidence 99999999999999999999999999999999999999997 68999999999999999999999999999985 69999
Q ss_pred hhHHHHHHHHhhhcCccc
Q 044786 321 ESLINDLRIACSSISASK 338 (340)
Q Consensus 321 ~~t~~~ll~a~~~~g~~~ 338 (340)
..||+.+|.+|++.|+.+
T Consensus 489 ~~t~~~lL~a~~~~g~l~ 506 (857)
T PLN03077 489 SVTLIAALSACARIGALM 506 (857)
T ss_pred HhHHHHHHHHHhhhchHH
Confidence 999999999999998653
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.4e-55 Score=404.06 Aligned_cols=323 Identities=20% Similarity=0.288 Sum_probs=296.7
Q ss_pred CCcchhHHHHHHhhhccchhhHHHHHHHHHhh----------------------------------cCCCCCHHHHHHHH
Q 044786 8 ITTDMYTCLIKECTFQKDSAGAFELLNHIRKR----------------------------------VNIKPTLLFLNRLL 53 (340)
Q Consensus 8 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----------------------------------~g~~~~~~~~~~li 53 (340)
||..+||.+|.+|++.|++++|.++|++|.+. .|+.||..+||.||
T Consensus 187 ~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li 266 (697)
T PLN03081 187 RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALI 266 (697)
T ss_pred CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHH
Confidence 56666677777766666666676666666554 04455566678899
Q ss_pred HHHHhcCChhHHHHHHhhcCcCCcccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccch
Q 044786 54 LMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNM 133 (340)
Q Consensus 54 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 133 (340)
++|+++|++++|.++|+.|.++|..+||.+|.+|++.|++++|.++|++|.+. |+ .||..||+.++.+|++.|++
T Consensus 267 ~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~--g~---~pd~~t~~~ll~a~~~~g~~ 341 (697)
T PLN03081 267 DMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDS--GV---SIDQFTFSIMIRIFSRLALL 341 (697)
T ss_pred HHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc--CC---CCCHHHHHHHHHHHHhccch
Confidence 99999999999999999999999999999999999999999999999999988 56 89999999999999999999
Q ss_pred hhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHcccCChhhHHHHHHHHhccCchhHHHHHHHHHhhcc
Q 044786 134 ELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRER 213 (340)
Q Consensus 134 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 213 (340)
++|.+++..|.+.|+.||..+|++|+++|+++|++++|.++|++|.++|+.+||+||.+|++.|+.++|+++|++|.+.|
T Consensus 342 ~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g 421 (697)
T PLN03081 342 EHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEG 421 (697)
T ss_pred HHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCChhhHHHHHHhcccCCchhchHHHHHHHHHH-hCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhcCCcHHHHHHH
Q 044786 214 IKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVK-IGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAM 292 (340)
Q Consensus 214 ~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l 292 (340)
+.||..||+.++.+|++.|..++ +..+++.|.+ .|+.|+..+|+.++++|++.|++++|.++++++..+|+..+|++|
T Consensus 422 ~~Pd~~T~~~ll~a~~~~g~~~~-a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~L 500 (697)
T PLN03081 422 VAPNHVTFLAVLSACRYSGLSEQ-GWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAAL 500 (697)
T ss_pred CCCCHHHHHHHHHHHhcCCcHHH-HHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHH
Confidence 99999999999999999999977 8999999875 699999999999999999999999999999999888999999999
Q ss_pred HHHHHHcCchHHHHHHHHHHHHcCCccc-hhHHHHHHHHhhhcCccc
Q 044786 293 LVGYIRNGLYVEATKFLYLMKASGIQIQ-ESLINDLRIACSSISASK 338 (340)
Q Consensus 293 i~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~t~~~ll~a~~~~g~~~ 338 (340)
+.+|...|+++.|..+++++. ++.|+ ..+|..+++.|++.|..+
T Consensus 501 l~a~~~~g~~~~a~~~~~~l~--~~~p~~~~~y~~L~~~y~~~G~~~ 545 (697)
T PLN03081 501 LTACRIHKNLELGRLAAEKLY--GMGPEKLNNYVVLLNLYNSSGRQA 545 (697)
T ss_pred HHHHHHcCCcHHHHHHHHHHh--CCCCCCCcchHHHHHHHHhCCCHH
Confidence 999999999999999999996 45664 679999999999999753
No 7
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.94 E-value=6.6e-24 Score=183.29 Aligned_cols=302 Identities=11% Similarity=0.085 Sum_probs=251.8
Q ss_pred HhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCcCC-------cccHHHHHHHHHccc
Q 044786 19 ECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRD-------FNSWAVMIVGYVDVA 91 (340)
Q Consensus 19 ~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~li~~~~~~g 91 (340)
.+...|++++|.+.|+.+.+. -+.+..++..+...+.+.|++++|.++++.+.... ...+..+...|.+.|
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKV--DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 456779999999999999976 34466789999999999999999999999887432 135778899999999
Q ss_pred ChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCch----hHHHHHHHHHHhhcC
Q 044786 92 DYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNI----SLTGSLINFYGKFRC 167 (340)
Q Consensus 92 ~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~ 167 (340)
++++|.++|+++.+.. +++..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+.|+
T Consensus 122 ~~~~A~~~~~~~l~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 195 (389)
T PRK11788 122 LLDRAEELFLQLVDEG------DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGD 195 (389)
T ss_pred CHHHHHHHHHHHHcCC------cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCC
Confidence 9999999999998763 567789999999999999999999999999887654322 245667888899999
Q ss_pred HHHHHHHHHHcccC---ChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCChhhHHHHHHhcccCCchhchHHHHHHH
Q 044786 168 LEDADFVFSQLKRH---NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHAN 244 (340)
Q Consensus 168 ~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~ 244 (340)
+++|...|+++.+. +...+..+...+.+.|++++|.++|+++.+.+......++..+..+|...|+.++ +...++.
T Consensus 196 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~-A~~~l~~ 274 (389)
T PRK11788 196 LDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAE-GLEFLRR 274 (389)
T ss_pred HHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHH-HHHHHHH
Confidence 99999999998643 4567888899999999999999999999876432234668889999999999977 7777777
Q ss_pred HHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhc-CCcHHHHHHHHHHHHH---cCchHHHHHHHHHHHHcCCccc
Q 044786 245 IVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD-KKNIASWNAMLVGYIR---NGLYVEATKFLYLMKASGIQIQ 320 (340)
Q Consensus 245 ~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~g~~~~ 320 (340)
+.+. .|+...+..+...+.+.|++++|.++++++.. .|+..+++.++..+.. .|+.++++.++++|..++++|+
T Consensus 275 ~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 352 (389)
T PRK11788 275 ALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRK 352 (389)
T ss_pred HHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCC
Confidence 7665 46666778999999999999999999998765 5888899999988775 5689999999999999999988
Q ss_pred hhHHHHHHHHhhhcCcc
Q 044786 321 ESLINDLRIACSSISAS 337 (340)
Q Consensus 321 ~~t~~~ll~a~~~~g~~ 337 (340)
+. ..|.+.|..
T Consensus 353 p~------~~c~~cg~~ 363 (389)
T PRK11788 353 PR------YRCRNCGFT 363 (389)
T ss_pred CC------EECCCCCCC
Confidence 87 447777654
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.91 E-value=1.3e-20 Score=179.73 Aligned_cols=313 Identities=11% Similarity=0.018 Sum_probs=186.3
Q ss_pred chhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCc---CCcccHHHHHHHH
Q 044786 11 DMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL---RDFNSWAVMIVGY 87 (340)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~ 87 (340)
..+..+...+.+.|++++|.++++.+... .+.+...|..+...+.+.|++++|.+.|+.+.+ .+...+..+...+
T Consensus 568 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 645 (899)
T TIGR02917 568 EPALALAQYYLGKGQLKKALAILNEAADA--APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAY 645 (899)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 33444445555555555555555555433 233445555555555555555555555555432 1333455555555
Q ss_pred HcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcC
Q 044786 88 VDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167 (340)
Q Consensus 88 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 167 (340)
...|++++|...|+++.+.. +.+..++..+...+...|++++|.++++.+.+... .+...+..+...+...|+
T Consensus 646 ~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~ 718 (899)
T TIGR02917 646 AVMKNYAKAITSLKRALELK------PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKD 718 (899)
T ss_pred HHcCCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCC
Confidence 55555555555555555442 23344555555555555555555555555555442 244455555566666666
Q ss_pred HHHHHHHHHHccc--CChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCChhhHHHHHHhcccCCchhchHHHHHHHH
Q 044786 168 LEDADFVFSQLKR--HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANI 245 (340)
Q Consensus 168 ~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~ 245 (340)
+++|.+.|+.+.+ |+..++..+..++.+.|++++|...++++.+.. +.+...+..+...|...|+.++ +...++.+
T Consensus 719 ~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~-A~~~~~~~ 796 (899)
T TIGR02917 719 YPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDK-AIKHYRTV 796 (899)
T ss_pred HHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH-HHHHHHHH
Confidence 6666666665542 333445556666666666666666666665542 2344555666666666676655 55666655
Q ss_pred HHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhc--CCcHHHHHHHHHHHHHcCchHHHHHHHHHHHHcCCccchhH
Q 044786 246 VKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD--KKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESL 323 (340)
Q Consensus 246 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t 323 (340)
.+.. +.++.+++.+...+.+.|+ .+|..++++... +.+..++..+...+...|++++|.+.|+++.+.+.. +..+
T Consensus 797 ~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~ 873 (899)
T TIGR02917 797 VKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAI 873 (899)
T ss_pred HHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHH
Confidence 5543 3466666777777777777 667777766654 235566777788888899999999999999887754 8888
Q ss_pred HHHHHHHhhhcCcc
Q 044786 324 INDLRIACSSISAS 337 (340)
Q Consensus 324 ~~~ll~a~~~~g~~ 337 (340)
+..+..++...|..
T Consensus 874 ~~~l~~~~~~~g~~ 887 (899)
T TIGR02917 874 RYHLALALLATGRK 887 (899)
T ss_pred HHHHHHHHHHcCCH
Confidence 88888888888764
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.90 E-value=6.8e-20 Score=174.87 Aligned_cols=316 Identities=12% Similarity=0.026 Sum_probs=176.0
Q ss_pred CCCcchhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCc---CCcccHHH-
Q 044786 7 PITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL---RDFNSWAV- 82 (340)
Q Consensus 7 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~- 82 (340)
+.++..+..+...+...|++++|.+.|+.+.+. .+.+...+..+...+...|++++|.+.|+.+.. .+..++..
T Consensus 462 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 539 (899)
T TIGR02917 462 PDNASLHNLLGAIYLGKGDLAKAREAFEKALSI--EPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILAL 539 (899)
T ss_pred CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHH
Confidence 445556666666666666666666666665543 222344444555555555555555555555432 12233444
Q ss_pred ---------------------------------HHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhh
Q 044786 83 ---------------------------------MIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVC 129 (340)
Q Consensus 83 ---------------------------------li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~ 129 (340)
+...+...|++++|.++++++.... +.+..+|..+...+..
T Consensus 540 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~ 613 (899)
T TIGR02917 540 AGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA------PDSPEAWLMLGRAQLA 613 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC------CCCHHHHHHHHHHHHH
Confidence 4444444444444444444444331 3344455555555555
Q ss_pred ccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHcccC---ChhhHHHHHHHHhccCchhHHHHHH
Q 044786 130 TMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH---NTVVWTAKIVNNCREGHFHQVFNDF 206 (340)
Q Consensus 130 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~ 206 (340)
.|++++|...++.+.+... .+...+..+...|.+.|++++|...|+++.+. +..++..+...+...|++++|..++
T Consensus 614 ~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 692 (899)
T TIGR02917 614 AGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIA 692 (899)
T ss_pred cCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5556666555555554432 23444555555555556666666655554322 3445555556666666666666666
Q ss_pred HHHhhcccCCChhhHHHHHHhcccCCchhchHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhc--CC
Q 044786 207 KEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD--KK 284 (340)
Q Consensus 207 ~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~ 284 (340)
+.+.+.+ +++...+..+...+...|++++ +...+..+...+ |+..++..+..++.+.|++++|.+.++.+.. +.
T Consensus 693 ~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~-A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 768 (899)
T TIGR02917 693 KSLQKQH-PKAALGFELEGDLYLRQKDYPA-AIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPN 768 (899)
T ss_pred HHHHhhC-cCChHHHHHHHHHHHHCCCHHH-HHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 6665543 2334455555566666666655 555555544432 3335555666667777777777777766654 23
Q ss_pred cHHHHHHHHHHHHHcCchHHHHHHHHHHHHcCCccchhHHHHHHHHhhhcCc
Q 044786 285 NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336 (340)
Q Consensus 285 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~a~~~~g~ 336 (340)
+...+..+...|...|++++|.+.|+++.+.. +.+...+..+...+...|.
T Consensus 769 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 819 (899)
T TIGR02917 769 DAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD 819 (899)
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc
Confidence 56667777777777777777777777776654 3455566666666655554
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.87 E-value=2.4e-19 Score=154.88 Aligned_cols=273 Identities=10% Similarity=-0.042 Sum_probs=223.2
Q ss_pred HHHHhcCChhHHHHHHhhcCcC---CcccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhc
Q 044786 54 LMHVSCGQLDTARQLFDEMPLR---DFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCT 130 (340)
Q Consensus 54 ~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~ 130 (340)
..+...|++++|.+.|+++.+. +..++..+...+...|++++|..+++.+.... .. .......++..+...+.+.
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-~~-~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRP-DL-TREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC-CC-CHHHHHHHHHHHHHHHHHC
Confidence 3456789999999999999843 34468889999999999999999999998752 11 0011235788899999999
Q ss_pred cchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHcccCC--------hhhHHHHHHHHhccCchhHH
Q 044786 131 MNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN--------TVVWTAKIVNNCREGHFHQV 202 (340)
Q Consensus 131 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~li~~~~~~~~~~~a 202 (340)
|+++.|..+|+.+.+.. ..+..++..++..+.+.|++++|.+.++.+.+.+ ...+..+...+.+.|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 99999999999998764 3467789999999999999999999999986532 12356677888899999999
Q ss_pred HHHHHHHhhcccCCChhhHHHHHHhcccCCchhchHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhc
Q 044786 203 FNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282 (340)
Q Consensus 203 ~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 282 (340)
...|+++.+.. +.+...+..+...+.+.|++++ +..+++.+...+......+++.++.+|.+.|++++|.+.++++..
T Consensus 200 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~-A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 200 RALLKKALAAD-PQCVRASILLGDLALAQGDYAA-AIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHH-HHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999998753 2235567778888999999977 778888877654333456788999999999999999999999876
Q ss_pred -CCcHHHHHHHHHHHHHcCchHHHHHHHHHHHHcCCccchhHHHHHHHHhhh
Q 044786 283 -KKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSS 333 (340)
Q Consensus 283 -~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~a~~~ 333 (340)
.|+...+..+...+.+.|++++|.++++++... .|+..++..++..+..
T Consensus 278 ~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~ 327 (389)
T PRK11788 278 EYPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLA 327 (389)
T ss_pred hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhh
Confidence 577777789999999999999999999998876 6999999988877654
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.83 E-value=1e-16 Score=145.72 Aligned_cols=289 Identities=8% Similarity=-0.012 Sum_probs=135.8
Q ss_pred HHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCc--C-CcccHHHHHHHHHcc
Q 044786 14 TCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL--R-DFNSWAVMIVGYVDV 90 (340)
Q Consensus 14 ~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~ 90 (340)
..++.+....|+++.|.+.++.+... -+.+...+..+...+.+.|++++|...+++... | +...+..+...+...
T Consensus 80 ~~l~~~~l~~g~~~~A~~~l~~~l~~--~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~ 157 (656)
T PRK15174 80 RRWVISPLASSQPDAVLQVVNKLLAV--NVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLM 157 (656)
T ss_pred HHHhhhHhhcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence 33334444455555555555555543 222334444455555555555555555555442 2 233444555555555
Q ss_pred cChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHH
Q 044786 91 ADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170 (340)
Q Consensus 91 g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 170 (340)
|++++|...++.+.... +.+...+..+ ..+...|++++|...++.+.+....++...+..+...+...|++++
T Consensus 158 g~~~eA~~~~~~~~~~~------P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~e 230 (656)
T PRK15174 158 DKELQAISLARTQAQEV------PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQE 230 (656)
T ss_pred CChHHHHHHHHHHHHhC------CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHH
Confidence 55555555555554441 1111122111 2244455555555555555444322233333334445555555555
Q ss_pred HHHHHHHcccC---ChhhHHHHHHHHhccCchhH----HHHHHHHHhhcccCCC-hhhHHHHHHhcccCCchhchHHHHH
Q 044786 171 ADFVFSQLKRH---NTVVWTAKIVNNCREGHFHQ----VFNDFKEMGRERIKKN-SYTFSSVLKACGGVDDDGNCGRQMH 242 (340)
Q Consensus 171 a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~----a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~~~~~~~ 242 (340)
|...+++..+. +...+..+...+...|++++ |...|++..+. .|+ ...+..+...+...|++++ +...+
T Consensus 231 A~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~e-A~~~l 307 (656)
T PRK15174 231 AIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEK-AIPLL 307 (656)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHH-HHHHH
Confidence 55555554321 33444555555555555553 45555555542 232 3344455555555555544 44444
Q ss_pred HHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhc-CCcHHH-HHHHHHHHHHcCchHHHHHHHHHHHHc
Q 044786 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD-KKNIAS-WNAMLVGYIRNGLYVEATKFLYLMKAS 315 (340)
Q Consensus 243 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-~~~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~ 315 (340)
+...... +.+...+..+...|.+.|++++|.+.++.+.. .|+... +..+..++...|++++|.+.|++..+.
T Consensus 308 ~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 308 QQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4444322 22334444555555555555555555555543 233222 222344455555566665555555444
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.81 E-value=3.1e-16 Score=142.69 Aligned_cols=310 Identities=9% Similarity=-0.020 Sum_probs=243.6
Q ss_pred hHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCc--C-CcccHHHHHHHHHc
Q 044786 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL--R-DFNSWAVMIVGYVD 89 (340)
Q Consensus 13 ~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~ 89 (340)
...++..+.+.|+++.|..+++..... .+-+......+..+....|++++|.+.|+++.. | +...+..+...+..
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~--~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~ 122 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLT--AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLK 122 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHh--CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 345677788999999999999999987 444556666777777889999999999999873 3 45578888899999
Q ss_pred ccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHH
Q 044786 90 VADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169 (340)
Q Consensus 90 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 169 (340)
.|++++|...+++..... +.+...+..+...+...|++++|...++.+......+.. .+..+ ..+...|+++
T Consensus 123 ~g~~~~Ai~~l~~Al~l~------P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~-a~~~~-~~l~~~g~~~ 194 (656)
T PRK15174 123 SKQYATVADLAEQAWLAF------SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGD-MIATC-LSFLNKSRLP 194 (656)
T ss_pred cCCHHHHHHHHHHHHHhC------CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHH-HHHHH-HHHHHcCCHH
Confidence 999999999999999873 445678888999999999999999999988777654333 33333 3478899999
Q ss_pred HHHHHHHHcccC----ChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCChhhHHHHHHhcccCCchhch---HHHHH
Q 044786 170 DADFVFSQLKRH----NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC---GRQMH 242 (340)
Q Consensus 170 ~a~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~---~~~~~ 242 (340)
+|...++.+.+. +...+..+..++...|++++|+..+++..+.. +.+...+..+-..+...|+++++ +...+
T Consensus 195 eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~ 273 (656)
T PRK15174 195 EDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHW 273 (656)
T ss_pred HHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHH
Confidence 999999997654 23344556778889999999999999998753 22455677788888999998652 67777
Q ss_pred HHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhc-CC-cHHHHHHHHHHHHHcCchHHHHHHHHHHHHcCCccc
Q 044786 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD-KK-NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQ 320 (340)
Q Consensus 243 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~ 320 (340)
+...... +.+...+..+...+.+.|++++|...+++... .| +...+..+...|.+.|++++|++.|+++... .|+
T Consensus 274 ~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~ 350 (656)
T PRK15174 274 RHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGV 350 (656)
T ss_pred HHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--Ccc
Confidence 7776653 34678899999999999999999999999876 34 5667888899999999999999999999876 355
Q ss_pred hhHH-HHHHHHhhhcCc
Q 044786 321 ESLI-NDLRIACSSISA 336 (340)
Q Consensus 321 ~~t~-~~ll~a~~~~g~ 336 (340)
...+ ..+-.++...|.
T Consensus 351 ~~~~~~~~a~al~~~G~ 367 (656)
T PRK15174 351 TSKWNRYAAAALLQAGK 367 (656)
T ss_pred chHHHHHHHHHHHHCCC
Confidence 4332 223345555554
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.74 E-value=2.6e-14 Score=130.30 Aligned_cols=320 Identities=9% Similarity=-0.074 Sum_probs=171.7
Q ss_pred CCCCcchhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCc-----------
Q 044786 6 LPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL----------- 74 (340)
Q Consensus 6 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----------- 74 (340)
+.|++..|..+..+|.+.|++++|++.++...+. -+.+...+..+..+|...|++++|+.-|.....
T Consensus 156 ~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~ 233 (615)
T TIGR00990 156 CKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQ 233 (615)
T ss_pred cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHH
Confidence 3456666667777777777777777777777654 223455666667777777777776543322110
Q ss_pred ----------------------CCcccHHHHHHH--------------------------H----------HcccChhHH
Q 044786 75 ----------------------RDFNSWAVMIVG--------------------------Y----------VDVADYQEC 96 (340)
Q Consensus 75 ----------------------~~~~~~~~li~~--------------------------~----------~~~g~~~~a 96 (340)
++...+..+... + ...+++++|
T Consensus 234 ~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A 313 (615)
T TIGR00990 234 AVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEA 313 (615)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHH
Confidence 000000000000 0 011345566
Q ss_pred HHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHH
Q 044786 97 ITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFS 176 (340)
Q Consensus 97 ~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 176 (340)
.+.|++..+.+ .. .+.....+..+...+...|++++|...++...+.... ....|..+...+...|++++|...|+
T Consensus 314 ~~~~~~al~~~-~~--~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~ 389 (615)
T TIGR00990 314 ARAFEKALDLG-KL--GEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQSYIKRASMNLELGDPDKAEEDFD 389 (615)
T ss_pred HHHHHHHHhcC-CC--ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 66666665542 11 0223445666666666677777777777766665422 34456666666667777777777776
Q ss_pred HcccC---ChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCC-hhhHHHHHHhcccCCchhchHHHHHHHHHHhCCCc
Q 044786 177 QLKRH---NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKN-SYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLES 252 (340)
Q Consensus 177 ~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (340)
+..+. +...|..+...+...|++++|...|++..+. .|+ ...+..+...+.+.|++++ +...++...+. .+.
T Consensus 390 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~e-A~~~~~~al~~-~P~ 465 (615)
T TIGR00990 390 KALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKEGSIAS-SMATFRRCKKN-FPE 465 (615)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHHCCCHHH-HHHHHHHHHHh-CCC
Confidence 65422 4556666666666677777777777666653 233 3445555556666666655 55555544432 233
Q ss_pred cHHHHHHHHHHHhccCCHHHHHHHHHHhhc-CCc-HH-------HHHHHHHHHHHcCchHHHHHHHHHHHHcCCccchhH
Q 044786 253 DEYVQCGLVDMYGKCRLLRDAERVFELIVD-KKN-IA-------SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESL 323 (340)
Q Consensus 253 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-~~~-~~-------~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t 323 (340)
++..++.+...+...|++++|.+.|+.... .|+ .. .++.....+...|++++|.+++++..... ..+...
T Consensus 466 ~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a 544 (615)
T TIGR00990 466 APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIA 544 (615)
T ss_pred ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHH
Confidence 455666666666666666666666666543 121 00 11111122233466666666666654442 112234
Q ss_pred HHHHHHHhhhcCc
Q 044786 324 INDLRIACSSISA 336 (340)
Q Consensus 324 ~~~ll~a~~~~g~ 336 (340)
+..+-..+...|.
T Consensus 545 ~~~la~~~~~~g~ 557 (615)
T TIGR00990 545 VATMAQLLLQQGD 557 (615)
T ss_pred HHHHHHHHHHccC
Confidence 4445555555443
No 14
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.72 E-value=5.2e-14 Score=114.50 Aligned_cols=312 Identities=14% Similarity=0.149 Sum_probs=195.7
Q ss_pred cchhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcC--ChhH-HHH-------------------
Q 044786 10 TDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCG--QLDT-ARQ------------------- 67 (340)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~--~~~~-a~~------------------- 67 (340)
+++=|.+++. ...|.++.+.-+|+.|.+. |.+.+...-..|+..-+-.+ ++-- -++
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e-~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G 193 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSE-NVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSG 193 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhc-CCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccc
Confidence 3444556554 4678999999999999999 99888887777776544322 1111 112
Q ss_pred ----HHhhcCcCCcccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHH
Q 044786 68 ----LFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLL 143 (340)
Q Consensus 68 ----~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 143 (340)
++-+...+...+|.+||.++++-...+.|.+++++-.... . +.+..+||.+|.+-.-. ...+++.+|
T Consensus 194 ~vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k--~---kv~~~aFN~lI~~~S~~----~~K~Lv~EM 264 (625)
T KOG4422|consen 194 AVADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAK--G---KVYREAFNGLIGASSYS----VGKKLVAEM 264 (625)
T ss_pred cHHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhh--h---eeeHHhhhhhhhHHHhh----ccHHHHHHH
Confidence 3333333456678888888888888888888888877663 2 67778888887765433 226777888
Q ss_pred HHcCCCCchhHHHHHHHHHHhhcCHHHHH----HHHHHcc----cCChhhHHHHHHHHhccCchhH-HHHHHHHHh----
Q 044786 144 FKLGSSRNISLTGSLINFYGKFRCLEDAD----FVFSQLK----RHNTVVWTAKIVNNCREGHFHQ-VFNDFKEMG---- 210 (340)
Q Consensus 144 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~----~~~~~~~----~~~~~~~~~li~~~~~~~~~~~-a~~~~~~m~---- 210 (340)
.+..+.||..|+|+++.+..+.|+++.|. +++.+|+ +|...+|..+|..+++.+++.+ |..++.++.
T Consensus 265 isqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~lt 344 (625)
T KOG4422|consen 265 ISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLT 344 (625)
T ss_pred HHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhc
Confidence 88888888888888888888888766543 4444454 4566677777777777666543 333333332
Q ss_pred hcccCC----ChhhHHHHHHhcccCCchhchHHHHHHHHHHh----CCCcc---HHHHHHHHHHHhccCCHHHHHHHHHH
Q 044786 211 RERIKK----NSYTFSSVLKACGGVDDDGNCGRQMHANIVKI----GLESD---EYVQCGLVDMYGKCRLLRDAERVFEL 279 (340)
Q Consensus 211 ~~~~~p----~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~----~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~ 279 (340)
.+.++| |..-|...+..|.+..+. +.|..+...+... -+.|+ ..-|..+....|+...++.-...++.
T Consensus 345 GK~fkp~~p~d~~FF~~AM~Ic~~l~d~-~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~ 423 (625)
T KOG4422|consen 345 GKTFKPITPTDNKFFQSAMSICSSLRDL-ELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYED 423 (625)
T ss_pred cCcccCCCCchhHHHHHHHHHHHHhhhH-HHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223333 223345556666666654 4466666655432 12222 22345556666666667777777776
Q ss_pred hhcC---CcHHHHHHHHHHHHHcCchHHHHHHHHHHHHcCCccchhHHHHHHHHhhh
Q 044786 280 IVDK---KNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSS 333 (340)
Q Consensus 280 ~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~a~~~ 333 (340)
|..+ |+..+...++++.--.+.++-.-+++.+|+..|..-+...-..++.-.++
T Consensus 424 lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~ 480 (625)
T KOG4422|consen 424 LVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLAR 480 (625)
T ss_pred hccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhc
Confidence 6542 56666666777777777777777777777777765555555444444443
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.72 E-value=6.4e-14 Score=127.76 Aligned_cols=296 Identities=10% Similarity=-0.044 Sum_probs=227.6
Q ss_pred hHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCcC---CcccHHHHHHHHHc
Q 044786 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLR---DFNSWAVMIVGYVD 89 (340)
Q Consensus 13 ~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~ 89 (340)
+......+.+.|+++.|++.|+.... +.|+...|..+..+|.+.|++++|++.++...+. +...|..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~---~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIE---CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 44566778889999999999999885 4688889999999999999999999999988743 44478888999999
Q ss_pred ccChhHHHHHHHHHHHhhcCC----------------------------ccccchHHHHHHHHH----------------
Q 044786 90 VADYQECITLFAEMMKRKKGH----------------------------MLLVFPAWIIVCVLK---------------- 125 (340)
Q Consensus 90 ~g~~~~a~~~~~~m~~~~~~~----------------------------~~~~~~~~~~~~ll~---------------- 125 (340)
.|++++|+.-|......+ +. +...|..........
T Consensus 207 lg~~~eA~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 207 LGKYADALLDLTASCIID-GFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred cCCHHHHHHHHHHHHHhC-CCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 999999987765543321 00 000000000000000
Q ss_pred -------Hh----------hhccchhhHHHHHHHHHHcC-CCC-chhHHHHHHHHHHhhcCHHHHHHHHHHcccC---Ch
Q 044786 126 -------AC----------VCTMNMELGKQVHGLLFKLG-SSR-NISLTGSLINFYGKFRCLEDADFVFSQLKRH---NT 183 (340)
Q Consensus 126 -------~~----------~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~ 183 (340)
++ ...+++++|.+.|+...+.+ ..| ....+..+...+...|++++|...|++..+. ..
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~ 365 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVT 365 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 00 11246888999999888765 233 4557888888999999999999999997643 35
Q ss_pred hhHHHHHHHHhccCchhHHHHHHHHHhhcccCC-ChhhHHHHHHhcccCCchhchHHHHHHHHHHhCCCccHHHHHHHHH
Q 044786 184 VVWTAKIVNNCREGHFHQVFNDFKEMGRERIKK-NSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVD 262 (340)
Q Consensus 184 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 262 (340)
..|..+...+...|++++|...|++..+. .| +...|..+...+...|++++ +...++...... +.+...+..+..
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~-A~~~~~kal~l~-P~~~~~~~~la~ 441 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKL--NSEDPDIYYHRAQLHFIKGEFAQ-AGKDYQKSIDLD-PDFIFSHIQLGV 441 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHcC-ccCHHHHHHHHH
Confidence 57888889999999999999999999875 34 46778888888999999977 777777766643 336777888899
Q ss_pred HHhccCCHHHHHHHHHHhhc-CC-cHHHHHHHHHHHHHcCchHHHHHHHHHHHHcC
Q 044786 263 MYGKCRLLRDAERVFELIVD-KK-NIASWNAMLVGYIRNGLYVEATKFLYLMKASG 316 (340)
Q Consensus 263 ~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 316 (340)
.+.+.|++++|...|++... .| +...|+.+...+...|++++|++.|++.....
T Consensus 442 ~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~ 497 (615)
T TIGR00990 442 TQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELE 497 (615)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 99999999999999998875 34 67889999999999999999999999987653
No 16
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.72 E-value=5.8e-14 Score=136.27 Aligned_cols=62 Identities=10% Similarity=0.082 Sum_probs=30.9
Q ss_pred cHHHHHHHHHHHhccCCHHHHHHHHHHhhcC--CcHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Q 044786 253 DEYVQCGLVDMYGKCRLLRDAERVFELIVDK--KNIASWNAMLVGYIRNGLYVEATKFLYLMKA 314 (340)
Q Consensus 253 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 314 (340)
+...+..+...|...|++++|.+.++.+... .+...+..+..++...|++++|.++++++..
T Consensus 636 ~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 699 (1157)
T PRK11447 636 NADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIP 699 (1157)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 3444455555555555555555555544431 2333444444555555555555555555544
No 17
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.71 E-value=1.1e-13 Score=134.40 Aligned_cols=220 Identities=9% Similarity=-0.006 Sum_probs=149.8
Q ss_pred HHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHH----
Q 044786 83 MIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL---- 158 (340)
Q Consensus 83 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---- 158 (340)
+...+...|++++|++.|++..+.. +-+...+..+...+.+.|++++|...++.+.+.... +...+..+
T Consensus 467 ~a~~~~~~g~~~eA~~~~~~Al~~~------P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l 539 (1157)
T PRK11447 467 QAEALENQGKWAQAAELQRQRLALD------PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYL 539 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHH
Confidence 3445556788888888888888773 334556777778888888888888888887765432 22222222
Q ss_pred ----------------------------------------HHHHHhhcCHHHHHHHHHHcccCChhhHHHHHHHHhccCc
Q 044786 159 ----------------------------------------INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGH 198 (340)
Q Consensus 159 ----------------------------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~ 198 (340)
.+.+...|+.++|.++++. ...+...+..+...+.+.|+
T Consensus 540 ~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-~p~~~~~~~~La~~~~~~g~ 618 (1157)
T PRK11447 540 SGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-QPPSTRIDLTLADWAQQRGD 618 (1157)
T ss_pred HhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-CCCCchHHHHHHHHHHHcCC
Confidence 2233344445555554442 11234456667778888899
Q ss_pred hhHHHHHHHHHhhcccCC-ChhhHHHHHHhcccCCchhchHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHH
Q 044786 199 FHQVFNDFKEMGRERIKK-NSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVF 277 (340)
Q Consensus 199 ~~~a~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 277 (340)
+++|+..|++..+. .| +...+..+...+...|+.++ +...++...... +.+..++..+..++.+.|++++|.+++
T Consensus 619 ~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~e-A~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~ 694 (1157)
T PRK11447 619 YAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAA-ARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTF 694 (1157)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHH-HHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHH
Confidence 99999999988875 34 45677788888888899877 767776655431 234556667778888899999999999
Q ss_pred HHhhcC-C-------cHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Q 044786 278 ELIVDK-K-------NIASWNAMLVGYIRNGLYVEATKFLYLMKA 314 (340)
Q Consensus 278 ~~~~~~-~-------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 314 (340)
+.+... | +...+..+...+...|++++|++.|++...
T Consensus 695 ~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 695 NRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 988652 1 223555667778889999999999988864
No 18
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.70 E-value=4.4e-13 Score=109.22 Aligned_cols=306 Identities=12% Similarity=0.048 Sum_probs=193.0
Q ss_pred CCCCcchhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCcCCcccHHHHHH
Q 044786 6 LPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIV 85 (340)
Q Consensus 6 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~ 85 (340)
.|-+..+|..+|.+.|+-...++|.+++..-... ..+.+..+||.+|.+-.-..+-+..-++...=..||..|+|++++
T Consensus 203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~-k~kv~~~aFN~lI~~~S~~~~K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGLCKFSSLERARELYKEHRAA-KGKVYREAFNGLIGASSYSVGKKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHh-hheeeHHhhhhhhhHHHhhccHHHHHHHHHhhcCCchHhHHHHHH
Confidence 4667889999999999999999999999999888 788899999999987665544333333333334789999999999
Q ss_pred HHHcccChhH----HHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhh-HHHHHHHHHHc----CCCC----ch
Q 044786 86 GYVDVADYQE----CITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMEL-GKQVHGLLFKL----GSSR----NI 152 (340)
Q Consensus 86 ~~~~~g~~~~----a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~----~~~~----~~ 152 (340)
+..+.|+++. |.+++.+|++. |+ .|.-.+|..+|..+.+.++..+ +..+..++... .++| +.
T Consensus 282 c~akfg~F~~ar~aalqil~EmKei--GV---ePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~ 356 (625)
T KOG4422|consen 282 CAAKFGKFEDARKAALQILGEMKEI--GV---EPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDN 356 (625)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHh--CC---CcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchh
Confidence 9999998765 56777888888 66 8999999999999988887644 44444444332 2332 34
Q ss_pred hHHHHHHHHHHhhcCHHHHHHHHHHcccC-----------ChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCChhhH
Q 044786 153 SLTGSLINFYGKFRCLEDADFVFSQLKRH-----------NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTF 221 (340)
Q Consensus 153 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~ 221 (340)
..|.+.+..|.+..+.+-|.++-.-.... ...-|..+....|+....+.-+..|+.|+-.-.-|+..+-
T Consensus 357 ~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m 436 (625)
T KOG4422|consen 357 KFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTM 436 (625)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhH
Confidence 45667777788888888887775544321 1112344445555555555555555555544444555555
Q ss_pred HHHHHhcccCCchhchHHHHHHHHHHhCCC--------------------------------------------------
Q 044786 222 SSVLKACGGVDDDGNCGRQMHANIVKIGLE-------------------------------------------------- 251 (340)
Q Consensus 222 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------------- 251 (340)
..++.+....+.+ +....++..++..|..
T Consensus 437 ~~~lrA~~v~~~~-e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~ 515 (625)
T KOG4422|consen 437 IHLLRALDVANRL-EVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQ 515 (625)
T ss_pred HHHHHHHhhcCcc-hhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 5555555444444 2233333333333322
Q ss_pred ----ccHHHHHHHHHHHhccCCHHHHHHHHHHhhcC----CcHHHHH---HHHHHHHHcCchHHHHHHHHHHHHcCCc
Q 044786 252 ----SDEYVQCGLVDMYGKCRLLRDAERVFELIVDK----KNIASWN---AMLVGYIRNGLYVEATKFLYLMKASGIQ 318 (340)
Q Consensus 252 ----~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~---~li~~~~~~~~~~~a~~~~~~m~~~g~~ 318 (340)
..+...+.+.-.+.+.|+.++|+++|..+..+ |-....| -++.+-.+.+....|+.+++-|...++.
T Consensus 516 r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 516 RAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLP 593 (625)
T ss_pred HhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCch
Confidence 22233444555556667777777776666332 2222233 3344445556666666666666555443
No 19
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.68 E-value=1.3e-14 Score=123.19 Aligned_cols=293 Identities=13% Similarity=0.023 Sum_probs=169.2
Q ss_pred CCcchhHHHHHHhhhccchhhHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhcCChhHHHHHHhhcCcCCcccH---HHH
Q 044786 8 ITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKP-TLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSW---AVM 83 (340)
Q Consensus 8 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~l 83 (340)
.-.++|..+.+.+-..|++++|+.+++.+.+. +| ....|..+..++...|+.+.|.+.|.+..+-|+..| +.+
T Consensus 114 q~ae~ysn~aN~~kerg~~~~al~~y~~aiel---~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~l 190 (966)
T KOG4626|consen 114 QGAEAYSNLANILKERGQLQDALALYRAAIEL---KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDL 190 (966)
T ss_pred hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhc---CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcch
Confidence 34578888999999999999999999999865 44 567888888888888998888888877664333211 112
Q ss_pred HHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 044786 84 IVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYG 163 (340)
Q Consensus 84 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 163 (340)
-..+...|+.++|...|.+..+.. +--...|+.|...+-..|+...|++.|++.++.... -...|-.|...|.
T Consensus 191 gnLlka~Grl~ea~~cYlkAi~~q------p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~k 263 (966)
T KOG4626|consen 191 GNLLKAEGRLEEAKACYLKAIETQ------PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYK 263 (966)
T ss_pred hHHHHhhcccchhHHHHHHHHhhC------CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHH
Confidence 222333455555555555555442 222334444444444555555555555554444322 2233444444444
Q ss_pred h----------------------------------hcCHHHHHHHHHHcccC--C-hhhHHHHHHHHhccCchhHHHHHH
Q 044786 164 K----------------------------------FRCLEDADFVFSQLKRH--N-TVVWTAKIVNNCREGHFHQVFNDF 206 (340)
Q Consensus 164 ~----------------------------------~~~~~~a~~~~~~~~~~--~-~~~~~~li~~~~~~~~~~~a~~~~ 206 (340)
. .|.++-|...|++..+. + ...|+.|..++-..|++.+|.+.|
T Consensus 264 e~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cY 343 (966)
T KOG4626|consen 264 EARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCY 343 (966)
T ss_pred HHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHH
Confidence 4 44555555555444322 1 234666666666666666666666
Q ss_pred HHHhhcccCCC-hhhHHHHHHhcccCCchhchHHHHHHHHHHhCCCc-cHHHHHHHHHHHhccCCHHHHHHHHHHhhc-C
Q 044786 207 KEMGRERIKKN-SYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLES-DEYVQCGLVDMYGKCRLLRDAERVFELIVD-K 283 (340)
Q Consensus 207 ~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-~ 283 (340)
.+.... .|+ ....+.+-..+...|.+++ +..++...... .| -....+.|...|-++|++++|..-+++... +
T Consensus 344 nkaL~l--~p~hadam~NLgni~~E~~~~e~-A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~ 418 (966)
T KOG4626|consen 344 NKALRL--CPNHADAMNNLGNIYREQGKIEE-ATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIK 418 (966)
T ss_pred HHHHHh--CCccHHHHHHHHHHHHHhccchH-HHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC
Confidence 655542 343 2344555566666666644 44444443332 22 234556666666666666666666666554 3
Q ss_pred Cc-HHHHHHHHHHHHHcCchHHHHHHHHHHHHc
Q 044786 284 KN-IASWNAMLVGYIRNGLYVEATKFLYLMKAS 315 (340)
Q Consensus 284 ~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 315 (340)
|+ ...|+.+.+.|-..|+.+.|++.+.+.+.-
T Consensus 419 P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~ 451 (966)
T KOG4626|consen 419 PTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI 451 (966)
T ss_pred chHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc
Confidence 43 346666666677777777777666665543
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.66 E-value=2.4e-12 Score=119.85 Aligned_cols=302 Identities=10% Similarity=-0.060 Sum_probs=204.8
Q ss_pred CCcchhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCc--C-CcccHHHHH
Q 044786 8 ITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL--R-DFNSWAVMI 84 (340)
Q Consensus 8 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li 84 (340)
.+...+..+...+...|++++|.++|+...+. -+.+...+..+...+...|++++|...+++..+ | +.. +..+.
T Consensus 47 ~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la 123 (765)
T PRK10049 47 LPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALA 123 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHH
Confidence 33445788888889999999999999998866 344567777888888999999999999988763 2 445 77788
Q ss_pred HHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhh-----------------------------
Q 044786 85 VGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMEL----------------------------- 135 (340)
Q Consensus 85 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~----------------------------- 135 (340)
..+...|+.++|+..++++.+.. +-+...+..+..++...+..+.
T Consensus 124 ~~l~~~g~~~~Al~~l~~al~~~------P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~ 197 (765)
T PRK10049 124 YVYKRAGRHWDELRAMTQALPRA------PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRL 197 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh
Confidence 88889999999999999998873 2233344444444444444433
Q ss_pred -----------------HHHHHHHHHHc-CCCCchh-HHH----HHHHHHHhhcCHHHHHHHHHHcccCC---h-hhHHH
Q 044786 136 -----------------GKQVHGLLFKL-GSSRNIS-LTG----SLINFYGKFRCLEDADFVFSQLKRHN---T-VVWTA 188 (340)
Q Consensus 136 -----------------a~~~~~~~~~~-~~~~~~~-~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~---~-~~~~~ 188 (340)
|.+.++.+.+. ...|+.. .+. ..+..+...|++++|...|+.+.+.+ . ..-..
T Consensus 198 ~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~ 277 (765)
T PRK10049 198 SFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRW 277 (765)
T ss_pred hcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHH
Confidence 33444444432 1222221 111 11234456688999999999887542 1 11222
Q ss_pred HHHHHhccCchhHHHHHHHHHhhcccCC---ChhhHHHHHHhcccCCchhchHHHHHHHHHHhCC-----------Ccc-
Q 044786 189 KIVNNCREGHFHQVFNDFKEMGRERIKK---NSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGL-----------ESD- 253 (340)
Q Consensus 189 li~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~- 253 (340)
+...|...|++++|+..|+++.+..... .......+..++...|++++ +...++.+..... .|+
T Consensus 278 la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~e-A~~~l~~~~~~~P~~~~~~~~~~~~p~~ 356 (765)
T PRK10049 278 VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPG-ALTVTAHTINNSPPFLRLYGSPTSIPND 356 (765)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHH-HHHHHHHHhhcCCceEeecCCCCCCCCc
Confidence 4668888999999999999887642111 12345566667788888877 6666666655421 122
Q ss_pred --HHHHHHHHHHHhccCCHHHHHHHHHHhhc--CCcHHHHHHHHHHHHHcCchHHHHHHHHHHHHcCCccch
Q 044786 254 --EYVQCGLVDMYGKCRLLRDAERVFELIVD--KKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQE 321 (340)
Q Consensus 254 --~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 321 (340)
...+..+...+...|++++|+++++++.. +.+...+..+...+...|++++|++.+++.... .|+.
T Consensus 357 ~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~ 426 (765)
T PRK10049 357 DWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRN 426 (765)
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCC
Confidence 23455677788888999999999988776 346778888888888899999999999887765 4554
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.64 E-value=4.9e-12 Score=117.77 Aligned_cols=316 Identities=8% Similarity=-0.013 Sum_probs=213.1
Q ss_pred CCCcchhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcC---cCCcccHHHH
Q 044786 7 PITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMP---LRDFNSWAVM 83 (340)
Q Consensus 7 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l 83 (340)
+.++....-.+......|+.++|++++...... -+.+...+..+...+.+.|++++|.++|++.. ..+...+..+
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~--~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~l 89 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVH--MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGL 89 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 455666677788888999999999999999864 25566678999999999999999999999965 3345567788
Q ss_pred HHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 044786 84 IVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYG 163 (340)
Q Consensus 84 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 163 (340)
...+...|++++|+..+++..+.. +.+.. +..+..++...|+.++|...++++.+..+. +...+..+..++.
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~------P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~ 161 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGA------PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALR 161 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC------CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 889999999999999999999883 44555 888889999999999999999999988655 4455555666776
Q ss_pred hhcCHHHHHHHHHHccc-------------------------------------------------CChhh---H----H
Q 044786 164 KFRCLEDADFVFSQLKR-------------------------------------------------HNTVV---W----T 187 (340)
Q Consensus 164 ~~~~~~~a~~~~~~~~~-------------------------------------------------~~~~~---~----~ 187 (340)
..+..++|.+.++.... .++.. + .
T Consensus 162 ~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~ 241 (765)
T PRK10049 162 NNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARI 241 (765)
T ss_pred HCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHH
Confidence 66766666655553322 01000 0 0
Q ss_pred HHHHHHhccCchhHHHHHHHHHhhcccC-CChhhHHHHHHhcccCCchhchHHHHHHHHHHhCCCc---cHHHHHHHHHH
Q 044786 188 AKIVNNCREGHFHQVFNDFKEMGRERIK-KNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLES---DEYVQCGLVDM 263 (340)
Q Consensus 188 ~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~li~~ 263 (340)
..+.++...|++++|+..|+++.+.+.. |+. .-..+..++...|++++ |...++.+....... .......+..+
T Consensus 242 d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~-A~~~l~~~l~~~p~~~~~~~~~~~~L~~a 319 (765)
T PRK10049 242 DRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEK-AQSILTELFYHPETIADLSDEELADLFYS 319 (765)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHH-HHHHHHHHhhcCCCCCCCChHHHHHHHHH
Confidence 0122344567778888888887765422 322 11223556777777766 666666555432111 12345556667
Q ss_pred HhccCCHHHHHHHHHHhhcC-C-------------c---HHHHHHHHHHHHHcCchHHHHHHHHHHHHcCCccchhHHHH
Q 044786 264 YGKCRLLRDAERVFELIVDK-K-------------N---IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLIND 326 (340)
Q Consensus 264 ~~~~~~~~~A~~~~~~~~~~-~-------------~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ 326 (340)
+.+.|++++|.++++.+... | + ...+..+...+...|+.++|+++++++.... +-+...+..
T Consensus 320 ~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~ 398 (765)
T PRK10049 320 LLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRID 398 (765)
T ss_pred HHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 77788888888887777652 2 1 1234456667777888888888888876552 223344444
Q ss_pred HHHHhhhcC
Q 044786 327 LRIACSSIS 335 (340)
Q Consensus 327 ll~a~~~~g 335 (340)
+...+...|
T Consensus 399 lA~l~~~~g 407 (765)
T PRK10049 399 YASVLQARG 407 (765)
T ss_pred HHHHHHhcC
Confidence 444444444
No 22
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.64 E-value=1.3e-13 Score=117.21 Aligned_cols=295 Identities=10% Similarity=0.031 Sum_probs=221.0
Q ss_pred cchhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCH-----------------------------------HHHHHHHH
Q 044786 10 TDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTL-----------------------------------LFLNRLLL 54 (340)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~-----------------------------------~~~~~li~ 54 (340)
.+.|..+..++...|+.+.|.+.|....+. .|+. ..|+.|..
T Consensus 150 ida~inla~al~~~~~~~~a~~~~~~alql---nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~ 226 (966)
T KOG4626|consen 150 IDAYINLAAALVTQGDLELAVQCFFEALQL---NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGC 226 (966)
T ss_pred hHHHhhHHHHHHhcCCCcccHHHHHHHHhc---CcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcch
Confidence 445556666666666666666666555533 3332 33444444
Q ss_pred HHHhcCChhHHHHHHhhcCcCCc---ccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhcc
Q 044786 55 MHVSCGQLDTARQLFDEMPLRDF---NSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTM 131 (340)
Q Consensus 55 ~~~~~~~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 131 (340)
.+-..|+...|++.|++...-|+ ..|-.|...|...+.+++|+..|.+..... +.....+..+...|...|
T Consensus 227 ~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr------pn~A~a~gNla~iYyeqG 300 (966)
T KOG4626|consen 227 VFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR------PNHAVAHGNLACIYYEQG 300 (966)
T ss_pred HHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC------CcchhhccceEEEEeccc
Confidence 55555666666666666553332 256667777777777788887777777663 345567788888888889
Q ss_pred chhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHccc--C-ChhhHHHHHHHHhccCchhHHHHHHHH
Q 044786 132 NMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR--H-NTVVWTAKIVNNCREGHFHQVFNDFKE 208 (340)
Q Consensus 132 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~ 208 (340)
.++.|+..|++..+.... -...|+.|..++-..|++.+|+..|++... + ...+.+.|...|...|.+++|..+|..
T Consensus 301 ~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~ 379 (966)
T KOG4626|consen 301 LLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLK 379 (966)
T ss_pred cHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 999999999988877533 467899999999999999999999999763 3 456789999999999999999999999
Q ss_pred HhhcccCCC-hhhHHHHHHhcccCCchhchHHHHHHHHHHhCCCcc-HHHHHHHHHHHhccCCHHHHHHHHHHhhc-CCc
Q 044786 209 MGRERIKKN-SYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESD-EYVQCGLVDMYGKCRLLRDAERVFELIVD-KKN 285 (340)
Q Consensus 209 m~~~~~~p~-~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~~~~-~~~ 285 (340)
..+ +.|. ....+.+...|-+.|++++ +...+++..+ ++|+ ...|+.+-..|-..|+++.|.+.+.+... +|.
T Consensus 380 al~--v~p~~aaa~nNLa~i~kqqgnl~~-Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt 454 (966)
T KOG4626|consen 380 ALE--VFPEFAAAHNNLASIYKQQGNLDD-AIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPT 454 (966)
T ss_pred HHh--hChhhhhhhhhHHHHHHhcccHHH-HHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcH
Confidence 877 4565 4567888899999999987 6666665554 6775 46888999999999999999999998875 453
Q ss_pred -HHHHHHHHHHHHHcCchHHHHHHHHHHHHcCCccch
Q 044786 286 -IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQE 321 (340)
Q Consensus 286 -~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 321 (340)
....+.|...|-..|+..+|+..|++... ++||.
T Consensus 455 ~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDf 489 (966)
T KOG4626|consen 455 FAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDF 489 (966)
T ss_pred HHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCC
Confidence 45788899999999999999999999864 46664
No 23
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.62 E-value=6.1e-12 Score=108.86 Aligned_cols=279 Identities=10% Similarity=-0.025 Sum_probs=201.0
Q ss_pred hhccchhhHHHHHHHHHhhcCCCCCHHH-HHHHHHHHHhcCChhHHHHHHhhcCc--CCcc--cHHHHHHHHHcccChhH
Q 044786 21 TFQKDSAGAFELLNHIRKRVNIKPTLLF-LNRLLLMHVSCGQLDTARQLFDEMPL--RDFN--SWAVMIVGYVDVADYQE 95 (340)
Q Consensus 21 ~~~~~~~~a~~~~~~m~~~~g~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~--~~~~li~~~~~~g~~~~ 95 (340)
...|+++.|.+.+....+. .|+... +-....+..+.|+.+.|.+.+++..+ |+.. ..-.....+...|+++.
T Consensus 95 ~~~g~~~~A~~~l~~~~~~---~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH---AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHH
Confidence 3578999999999887654 455433 34445777888999999999998753 3432 23335777888999999
Q ss_pred HHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHH---Hhh----cCH
Q 044786 96 CITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFY---GKF----RCL 168 (340)
Q Consensus 96 a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~----~~~ 168 (340)
|.+.++.+.+.. +-+..++..+...+.+.|+++.+.+.+..+.+.+..+.......-..++ ... ...
T Consensus 172 Al~~l~~l~~~~------P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~ 245 (409)
T TIGR00540 172 ARHGVDKLLEMA------PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGI 245 (409)
T ss_pred HHHHHHHHHHhC------CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 999999999984 4466788999999999999999999999999997553332211111111 222 223
Q ss_pred HHHHHHHHHccc---CChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCChhhHH-HHHHh--cccCCchhchHHHHH
Q 044786 169 EDADFVFSQLKR---HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFS-SVLKA--CGGVDDDGNCGRQMH 242 (340)
Q Consensus 169 ~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~-~ll~~--~~~~~~~~~~~~~~~ 242 (340)
+...+.++...+ .+...+..+...+...|+.++|.+++++..+. .||..... .++.. ....++... +....
T Consensus 246 ~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~-~~~~~ 322 (409)
T TIGR00540 246 DGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEK-LEKLI 322 (409)
T ss_pred HHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHH-HHHHH
Confidence 455555665553 37788889999999999999999999999886 35543210 12222 233455544 44555
Q ss_pred HHHHHhCCCccH--HHHHHHHHHHhccCCHHHHHHHHHH--hh-cCCcHHHHHHHHHHHHHcCchHHHHHHHHHH
Q 044786 243 ANIVKIGLESDE--YVQCGLVDMYGKCRLLRDAERVFEL--IV-DKKNIASWNAMLVGYIRNGLYVEATKFLYLM 312 (340)
Q Consensus 243 ~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~A~~~~~~--~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 312 (340)
+...+. .+-|+ ....++-..+.+.|++++|.+.|+. .. ..|+...+..+...+.+.|+.++|.+++++-
T Consensus 323 e~~lk~-~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 323 EKQAKN-VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHh-CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444432 22244 6677889999999999999999993 33 3688888999999999999999999999974
No 24
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.62 E-value=5.6e-12 Score=108.56 Aligned_cols=277 Identities=9% Similarity=-0.078 Sum_probs=206.0
Q ss_pred ccchhhHHHHHHHHHhhcCCCCCHHHHHHH-HHHHHhcCChhHHHHHHhhcCcCCcc--cHH--HHHHHHHcccChhHHH
Q 044786 23 QKDSAGAFELLNHIRKRVNIKPTLLFLNRL-LLMHVSCGQLDTARQLFDEMPLRDFN--SWA--VMIVGYVDVADYQECI 97 (340)
Q Consensus 23 ~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l-i~~~~~~~~~~~a~~~~~~~~~~~~~--~~~--~li~~~~~~g~~~~a~ 97 (340)
.|+++.|.+.+...... .+++..+-.+ .....+.|+++.|.+.++++.+.+.. ... .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~---~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADH---AEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhc---ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 58999999888775544 2233333333 34447889999999999998854333 222 2256788899999999
Q ss_pred HHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCch-------hHHHHHHHHHHhhcCHHH
Q 044786 98 TLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNI-------SLTGSLINFYGKFRCLED 170 (340)
Q Consensus 98 ~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~ 170 (340)
+.+++..+.. +-+......+...+.+.|+++++.+++..+.+.+..++. ..|..++.......+.+.
T Consensus 174 ~~l~~~~~~~------P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~ 247 (398)
T PRK10747 174 HGVDKLLEVA------PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEG 247 (398)
T ss_pred HHHHHHHhcC------CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 9999999884 456678888999999999999999999999988765333 133344444445556677
Q ss_pred HHHHHHHccc---CChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCChhhHHHHHHhcccCCchhchHHHHHHHHHH
Q 044786 171 ADFVFSQLKR---HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVK 247 (340)
Q Consensus 171 a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~ 247 (340)
..++++.+.+ .+......+..++...|+.++|.+++++..+. .|+... .++.+....++.++ +....+...+
T Consensus 248 l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~-al~~~e~~lk 322 (398)
T PRK10747 248 LKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQ-LEKVLRQQIK 322 (398)
T ss_pred HHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHH-HHHHHHHHHh
Confidence 7777777753 36778888999999999999999999998874 444422 23344445577766 4555554444
Q ss_pred hCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhc-CCcHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Q 044786 248 IGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD-KKNIASWNAMLVGYIRNGLYVEATKFLYLMKA 314 (340)
Q Consensus 248 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 314 (340)
. .+-|+.....+-..+.+.+++++|.+.|+.... .|+...+..+...+.+.|+.++|.+++++-..
T Consensus 323 ~-~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 323 Q-HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred h-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3 244677788899999999999999999999887 58989989999999999999999999987543
No 25
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.61 E-value=7.2e-15 Score=120.84 Aligned_cols=250 Identities=12% Similarity=0.112 Sum_probs=98.9
Q ss_pred HHHHHHHhcCChhHHHHHHhhc-Cc----CCcccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHH
Q 044786 51 RLLLMHVSCGQLDTARQLFDEM-PL----RDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLK 125 (340)
Q Consensus 51 ~li~~~~~~~~~~~a~~~~~~~-~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~ 125 (340)
.+-..+.+.|++++|+++++.. .. .|...|..+.......++++.|.+.++++...+ +-+...+..++.
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~------~~~~~~~~~l~~ 86 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD------KANPQDYERLIQ 86 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc------cccccccccccc
Confidence 4456666777777777777432 21 234445555555566677777777777777663 234445555555
Q ss_pred HhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHcc-----cCChhhHHHHHHHHhccCchh
Q 044786 126 ACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK-----RHNTVVWTAKIVNNCREGHFH 200 (340)
Q Consensus 126 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~ 200 (340)
. ...+++++|.+++....+.. ++...+...+..+...++++++.++++... +.+...|..+...+.+.|+++
T Consensus 87 l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~ 163 (280)
T PF13429_consen 87 L-LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPD 163 (280)
T ss_dssp ----------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHH
T ss_pred c-cccccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHH
Confidence 5 57777777777776554443 345556667777778888888888877754 235566777888888889999
Q ss_pred HHHHHHHHHhhcccCCC-hhhHHHHHHhcccCCchhchHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHH
Q 044786 201 QVFNDFKEMGRERIKKN-SYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFEL 279 (340)
Q Consensus 201 ~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 279 (340)
+|++.+++..+. .|+ ......++..+...|+.++ +..++....+.. +.++..+..+..+|...|+.++|...|++
T Consensus 164 ~A~~~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~-~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~ 239 (280)
T PF13429_consen 164 KALRDYRKALEL--DPDDPDARNALAWLLIDMGDYDE-AREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEK 239 (280)
T ss_dssp HHHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHH-HHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCChHH-HHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccc
Confidence 999999888874 464 5567778888888888766 666666665553 55667788889999999999999999998
Q ss_pred hhc-CC-cHHHHHHHHHHHHHcCchHHHHHHHHHHH
Q 044786 280 IVD-KK-NIASWNAMLVGYIRNGLYVEATKFLYLMK 313 (340)
Q Consensus 280 ~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 313 (340)
... .| |+.....+..++...|+.++|.++.++..
T Consensus 240 ~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 240 ALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHSTT-HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccccccccccc
Confidence 876 34 77788888899999999999998877653
No 26
>PF13041 PPR_2: PPR repeat family
Probab=99.60 E-value=2.8e-15 Score=87.98 Aligned_cols=50 Identities=26% Similarity=0.410 Sum_probs=48.7
Q ss_pred CcHHHHHHHHHHHHHcCchHHHHHHHHHHHHcCCccchhHHHHHHHHhhh
Q 044786 284 KNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSS 333 (340)
Q Consensus 284 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~a~~~ 333 (340)
||+.+||++|.+|++.|++++|.++|++|++.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999985
No 27
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.60 E-value=6.5e-15 Score=121.11 Aligned_cols=259 Identities=12% Similarity=0.093 Sum_probs=109.0
Q ss_pred cchhHHHHHHhhhccchhhHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhcCChhHHHHHHhhcCcC---CcccHHHHHH
Q 044786 10 TDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKP-TLLFLNRLLLMHVSCGQLDTARQLFDEMPLR---DFNSWAVMIV 85 (340)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~ 85 (340)
...+ .+...+.+.|++++|+++++..... .-+| +...|..+.......++.+.|.+.++++... ++..+..++.
T Consensus 9 ~~~l-~~A~~~~~~~~~~~Al~~L~~~~~~-~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~ 86 (280)
T PF13429_consen 9 EEAL-RLARLLYQRGDYEKALEVLKKAAQK-IAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQ 86 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccc-ccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3444 5577888999999999999766554 2234 4555556666777889999999999999854 3446777777
Q ss_pred HHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcC-CCCchhHHHHHHHHHHh
Q 044786 86 GYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLG-SSRNISLTGSLINFYGK 164 (340)
Q Consensus 86 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~ 164 (340)
. ...+++++|.+++.+..+. .++...+..++..+.+.++++++..+++.+.... ...+...|..+...+.+
T Consensus 87 l-~~~~~~~~A~~~~~~~~~~-------~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~ 158 (280)
T PF13429_consen 87 L-LQDGDPEEALKLAEKAYER-------DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQ 158 (280)
T ss_dssp ---------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHH
T ss_pred c-ccccccccccccccccccc-------ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHH
Confidence 7 7899999999999887766 4667778888899999999999999999987543 34677888899999999
Q ss_pred hcCHHHHHHHHHHccc--C-ChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCChhhHHHHHHhcccCCchhchHHHH
Q 044786 165 FRCLEDADFVFSQLKR--H-NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQM 241 (340)
Q Consensus 165 ~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~ 241 (340)
.|+.++|.+.+++..+ | |....+.++..+...|+.+++..+++...+.. +.|...+..+..++...|+.++ |..+
T Consensus 159 ~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~-Al~~ 236 (280)
T PF13429_consen 159 LGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEE-ALEY 236 (280)
T ss_dssp CCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHH-HHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccc-cccc
Confidence 9999999999999863 4 56778899999999999999999999987764 4455667888899999999977 7777
Q ss_pred HHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhh
Q 044786 242 HANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIV 281 (340)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 281 (340)
++...+.. +.|+.+...+.+++...|+.++|.++.++..
T Consensus 237 ~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 237 LEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHS-TT-HHHHHHHHHHHT----------------
T ss_pred cccccccc-ccccccccccccccccccccccccccccccc
Confidence 77766643 4588888999999999999999999987654
No 28
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.58 E-value=1.4e-11 Score=115.69 Aligned_cols=292 Identities=10% Similarity=-0.047 Sum_probs=216.3
Q ss_pred chhHHHHHHhhhccchhhHHHHHHHHHhh-cCCCCCHHHHHHHHHHHHhcCC---hhHHHHH------------Hh----
Q 044786 11 DMYTCLIKECTFQKDSAGAFELLNHIRKR-VNIKPTLLFLNRLLLMHVSCGQ---LDTARQL------------FD---- 70 (340)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~g~~~~~~~~~~li~~~~~~~~---~~~a~~~------------~~---- 70 (340)
...-.+--...+.|+.++|.++|+..... ..-.++....+.|+..|.+.+. ...+..+ ..
T Consensus 377 ~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 456 (987)
T PRK09782 377 TRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPG 456 (987)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhh
Confidence 33334444456789999999999998872 1233456666688888888876 3333333 11
Q ss_pred ---------hcCc---C--CcccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhH
Q 044786 71 ---------EMPL---R--DFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELG 136 (340)
Q Consensus 71 ---------~~~~---~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 136 (340)
.... + +...|..+..++.. +++++|+..+.+.... .|+......+...+...|++++|
T Consensus 457 ~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~-------~Pd~~~~L~lA~al~~~Gr~eeA 528 (987)
T PRK09782 457 IADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR-------QPDAWQHRAVAYQAYQVEDYATA 528 (987)
T ss_pred hhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh-------CCchHHHHHHHHHHHHCCCHHHH
Confidence 1111 1 34456777777766 7888999999988877 57766555556666789999999
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHcccCChhhHHHH---HHHHhccCchhHHHHHHHHHhhcc
Q 044786 137 KQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAK---IVNNCREGHFHQVFNDFKEMGRER 213 (340)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l---i~~~~~~~~~~~a~~~~~~m~~~~ 213 (340)
...++.+.... |+...+..+...+.+.|+.++|...++...+.+....+.. .......|++++|...+++..+.
T Consensus 529 i~~~rka~~~~--p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l- 605 (987)
T PRK09782 529 LAAWQKISLHD--MSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI- 605 (987)
T ss_pred HHHHHHHhccC--CCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh-
Confidence 99999876553 3344566777888999999999999998876543333333 33334459999999999999874
Q ss_pred cCCChhhHHHHHHhcccCCchhchHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhc-CC-cHHHHHH
Q 044786 214 IKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD-KK-NIASWNA 291 (340)
Q Consensus 214 ~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~ 291 (340)
.|+...+..+...+.+.|+.++ +...++...... +-+...++.+...+...|++++|.+.+++... .| +...+..
T Consensus 606 -~P~~~a~~~LA~~l~~lG~~de-A~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~n 682 (987)
T PRK09782 606 -APSANAYVARATIYRQRHNVPA-AVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQ 682 (987)
T ss_pred -CCCHHHHHHHHHHHHHCCCHHH-HHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 5777788888899999999977 777777776653 34677888888899999999999999998876 34 7788999
Q ss_pred HHHHHHHcCchHHHHHHHHHHHHcC
Q 044786 292 MLVGYIRNGLYVEATKFLYLMKASG 316 (340)
Q Consensus 292 li~~~~~~~~~~~a~~~~~~m~~~g 316 (340)
+..++...|++++|+..|++..+..
T Consensus 683 LA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 683 LAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999987653
No 29
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.58 E-value=1.6e-11 Score=96.64 Aligned_cols=295 Identities=12% Similarity=0.080 Sum_probs=220.0
Q ss_pred hhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCcCCcccH-------HHHH
Q 044786 12 MYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSW-------AVMI 84 (340)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~li 84 (340)
.|-.=++.+. ..+.++|.++|-.|.+. -+-+..+.-+|.+.|-+.|.+|.|+++.+.+.++...|+ --|.
T Consensus 38 ~Yv~GlNfLL-s~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~ 114 (389)
T COG2956 38 DYVKGLNFLL-SNQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLG 114 (389)
T ss_pred HHHhHHHHHh-hcCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 3444444443 45889999999999875 233455666888999999999999999999875433333 3466
Q ss_pred HHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchh----HHHHHHH
Q 044786 85 VGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNIS----LTGSLIN 160 (340)
Q Consensus 85 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~ 160 (340)
.-|...|-+|.|+++|..+.+.+ ..-......|+..|-...+|++|..+-+++.+.+.++... .|.-|..
T Consensus 115 ~Dym~aGl~DRAE~~f~~L~de~------efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq 188 (389)
T COG2956 115 RDYMAAGLLDRAEDIFNQLVDEG------EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQ 188 (389)
T ss_pred HHHHHhhhhhHHHHHHHHHhcch------hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHH
Confidence 77889999999999999999864 5566678899999999999999999999999988765432 4566677
Q ss_pred HHHhhcCHHHHHHHHHHcccCC---hhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCChhhHHHHHHhcccCCchhch
Q 044786 161 FYGKFRCLEDADFVFSQLKRHN---TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC 237 (340)
Q Consensus 161 ~~~~~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~ 237 (340)
.+....+++.|..++.+..+.| +..--.+.+.+...|++.+|.+.++...+.+..--..+...+..+|.+.|+..+
T Consensus 189 ~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~- 267 (389)
T COG2956 189 QALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAE- 267 (389)
T ss_pred HHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHH-
Confidence 7777889999999999887543 344455667888899999999999999987655556778899999999999977
Q ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHH-HHHHhhcCCcHHHHHHHHHHHH---HcCchHHHHHHHHHHH
Q 044786 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAER-VFELIVDKKNIASWNAMLVGYI---RNGLYVEATKFLYLMK 313 (340)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~-~~~~~~~~~~~~~~~~li~~~~---~~~~~~~a~~~~~~m~ 313 (340)
+..++..+.+....++. -..+-+.-....-.+.|.. +.+.+..+|+...+..||..-. ..|...+-+.++++|.
T Consensus 268 ~~~fL~~~~~~~~g~~~--~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 268 GLNFLRRAMETNTGADA--ELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred HHHHHHHHHHccCCccH--HHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 66666666654433333 3334444444444555555 4566666899999999998655 3455777788888887
Q ss_pred HcCCc
Q 044786 314 ASGIQ 318 (340)
Q Consensus 314 ~~g~~ 318 (340)
...++
T Consensus 346 ge~l~ 350 (389)
T COG2956 346 GEQLR 350 (389)
T ss_pred HHHHh
Confidence 66443
No 30
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.57 E-value=5.1e-11 Score=96.55 Aligned_cols=284 Identities=12% Similarity=-0.015 Sum_probs=226.8
Q ss_pred ccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCcC--Ccc--cHHHHHHHHHcccChhHHHH
Q 044786 23 QKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLR--DFN--SWAVMIVGYVDVADYQECIT 98 (340)
Q Consensus 23 ~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~--~~~~li~~~~~~g~~~~a~~ 98 (340)
.|+|.+|.++...-.+. +-. ....|-.-..+--+.|+.+.+-+++.+..++ |.. .+-...+.....|+.+.|..
T Consensus 97 eG~~~qAEkl~~rnae~-~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAEH-GEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhhc-Ccc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 68999999999987766 433 3344555556677889999999999998865 333 45556677888999999999
Q ss_pred HHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchh-------HHHHHHHHHHhhcCHHHH
Q 044786 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNIS-------LTGSLINFYGKFRCLEDA 171 (340)
Q Consensus 99 ~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a 171 (340)
-+++..+.+ +-+..+......+|.+.|++..+..+...+.+.|.-.+.. +|..+++-....+..+.-
T Consensus 175 ~v~~ll~~~------pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL 248 (400)
T COG3071 175 NVDQLLEMT------PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGL 248 (400)
T ss_pred HHHHHHHhC------cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHH
Confidence 999999885 5677889999999999999999999999999999765543 567777766666666776
Q ss_pred HHHHHHccc---CChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCChhhHHHHHHhcccCCchhchHHHHHHHHHHh
Q 044786 172 DFVFSQLKR---HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKI 248 (340)
Q Consensus 172 ~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~ 248 (340)
...++..+. .++..-.+++.-+.+.|+.++|.++.++-.+++..|.. ..+-.+.+.++.......+-......
T Consensus 249 ~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h 324 (400)
T COG3071 249 KTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQH 324 (400)
T ss_pred HHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhC
Confidence 777887763 36777788899999999999999999999998777762 22335667777766566666666666
Q ss_pred CCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhc-CCcHHHHHHHHHHHHHcCchHHHHHHHHHHHHcCCccc
Q 044786 249 GLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD-KKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQ 320 (340)
Q Consensus 249 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~ 320 (340)
+-.| ..+.+|-..|.+.+.+.+|.+.|+...+ +|+..+|+-+..+|.+.|+..+|.+++++-...-.+|+
T Consensus 325 ~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 325 PEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred CCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 5555 7788899999999999999999998776 58999999999999999999999999998765544444
No 31
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.53 E-value=6.5e-11 Score=102.00 Aligned_cols=264 Identities=9% Similarity=0.023 Sum_probs=200.0
Q ss_pred cCChhHHHHHHhhcCcC--CcccHHH-HHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHH--HHHHHhhhccch
Q 044786 59 CGQLDTARQLFDEMPLR--DFNSWAV-MIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIV--CVLKACVCTMNM 133 (340)
Q Consensus 59 ~~~~~~a~~~~~~~~~~--~~~~~~~-li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~--~ll~~~~~~~~~ 133 (340)
.|+++.|++.+....+. ++..+.. ...+..+.|+++.|.+.+.++.+. .|+..... .....+...|++
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~-------~~~~~~~~~l~~a~l~l~~g~~ 169 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL-------ADNDQLPVEITRVRIQLARNEN 169 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-------CCcchHHHHHHHHHHHHHCCCH
Confidence 59999999998876543 2223322 344457899999999999999887 56665433 335788889999
Q ss_pred hhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHcccCCh-----------hhHHHHHHHHhccCchhHH
Q 044786 134 ELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNT-----------VVWTAKIVNNCREGHFHQV 202 (340)
Q Consensus 134 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~~~li~~~~~~~~~~~a 202 (340)
+.|.+.++.+.+..+. ++.....+...|.+.|++++|.+++..+.+... .+|..++.......+.+..
T Consensus 170 ~~Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l 248 (398)
T PRK10747 170 HAARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGL 248 (398)
T ss_pred HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 9999999999988744 677888999999999999999999999885422 1334444444455566777
Q ss_pred HHHHHHHhhcccCCChhhHHHHHHhcccCCchhchHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhc
Q 044786 203 FNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282 (340)
Q Consensus 203 ~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 282 (340)
.++++.+.+. .+.+......+..++...|+.++ +..+.+...+. +|+... .++.+....++.+++.+..+...+
T Consensus 249 ~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~-A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk 322 (398)
T PRK10747 249 KRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDT-AQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIK 322 (398)
T ss_pred HHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHH-HHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHh
Confidence 7777777553 24466677888899999999977 66666666553 455533 234455566999999999998876
Q ss_pred C-C-cHHHHHHHHHHHHHcCchHHHHHHHHHHHHcCCccchhHHHHHHHHhhhcCccc
Q 044786 283 K-K-NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASK 338 (340)
Q Consensus 283 ~-~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~a~~~~g~~~ 338 (340)
+ | |...+..+...+.+.+++++|.+.|+...+. .|+..++..+-..+.+.|..+
T Consensus 323 ~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~ 378 (398)
T PRK10747 323 QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPE 378 (398)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHH
Confidence 3 4 6667888999999999999999999999865 699999989988888888653
No 32
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.52 E-value=2.1e-12 Score=113.98 Aligned_cols=267 Identities=12% Similarity=0.026 Sum_probs=182.9
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCcC----CcccHHHHHHHHHcccChhHHHHHHHHHHHh
Q 044786 31 ELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLR----DFNSWAVMIVGYVDVADYQECITLFAEMMKR 106 (340)
Q Consensus 31 ~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 106 (340)
.++..+... |+.|+..||..+|.-||..|+.+.|- +|.-|.-+ +...|+.++.+...+++.+.+.
T Consensus 11 nfla~~e~~-gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk--------- 79 (1088)
T KOG4318|consen 11 NFLALHEIS-GILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK--------- 79 (1088)
T ss_pred hHHHHHHHh-cCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC---------
Confidence 456667777 88888888888888888888888888 88777744 3345777887777777766553
Q ss_pred hcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHcc-cC-Chh
Q 044786 107 KKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK-RH-NTV 184 (340)
Q Consensus 107 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~-~~~ 184 (340)
.|...||..|+.+|...||+..-.. ..+ -...+...+...|.-.....++..+. .| ...
T Consensus 80 -------ep~aDtyt~Ll~ayr~hGDli~fe~----veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lp 140 (1088)
T KOG4318|consen 80 -------EPLADTYTNLLKAYRIHGDLILFEV----VEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLP 140 (1088)
T ss_pred -------CCchhHHHHHHHHHHhccchHHHHH----HHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccch
Confidence 4777788888888888888765222 222 12233344455555444455554432 11 111
Q ss_pred hHHHHHHHHhccCchhHHHHHHHHHhhcc-cCCChhhHHHHHHhcccCCchhchHHHHHHHHHHhCCCccHHHHHHHHHH
Q 044786 185 VWTAKIVNNCREGHFHQVFNDFKEMGRER-IKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDM 263 (340)
Q Consensus 185 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 263 (340)
.-.+.+.-....|.++.+++++..+.... ..|. ..++.-+...... .+.+..+.....-.|++.+|.+++++
T Consensus 141 da~n~illlv~eglwaqllkll~~~Pvsa~~~p~----~vfLrqnv~~ntp---vekLl~~cksl~e~~~s~~l~a~l~~ 213 (1088)
T KOG4318|consen 141 DAENAILLLVLEGLWAQLLKLLAKVPVSAWNAPF----QVFLRQNVVDNTP---VEKLLNMCKSLVEAPTSETLHAVLKR 213 (1088)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhCCcccccchH----HHHHHHhccCCch---HHHHHHHHHHhhcCCChHHHHHHHHH
Confidence 22334555566777778877777664321 1122 2236666666554 55666665544336999999999999
Q ss_pred HhccCCHHHHHHHHHHhhcCC---cHHHHHHHHHHHHHcCchHHHHHHHHHHHHcCCccchhHHHHHHHHhhhcCcc
Q 044786 264 YGKCRLLRDAERVFELIVDKK---NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISAS 337 (340)
Q Consensus 264 ~~~~~~~~~A~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~a~~~~g~~ 337 (340)
-...|+++.|..++.+|+.+. +..-|..|+.+ .++...+..+++-|.+.|+.|+..|+..-+-.|.+.|..
T Consensus 214 alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t 287 (1088)
T KOG4318|consen 214 ALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQT 287 (1088)
T ss_pred HHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhh
Confidence 999999999999999998752 44445556555 788888999999999999999999999999888886654
No 33
>PF13041 PPR_2: PPR repeat family
Probab=99.51 E-value=4.1e-14 Score=82.99 Aligned_cols=50 Identities=28% Similarity=0.567 Sum_probs=47.2
Q ss_pred CChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCChhhHHHHHHhccc
Q 044786 181 HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230 (340)
Q Consensus 181 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 230 (340)
||+++||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68899999999999999999999999999999999999999999999875
No 34
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.50 E-value=4.6e-10 Score=103.55 Aligned_cols=308 Identities=10% Similarity=0.007 Sum_probs=207.7
Q ss_pred HHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCcCCcccHHHHHHHHHc--ccChh
Q 044786 17 IKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVD--VADYQ 94 (340)
Q Consensus 17 i~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~--~g~~~ 94 (340)
...+...|++++|.++|+.+.+. -+-+...+..++..+...++.++|++.++.+.+.+......+..++.. .++..
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~--dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~ 186 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKK--DPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNY 186 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHH
Confidence 45677789999999999999877 344567777888889999999999999999986655543334445544 45665
Q ss_pred HHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHH----------------------------------
Q 044786 95 ECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVH---------------------------------- 140 (340)
Q Consensus 95 ~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~---------------------------------- 140 (340)
+|++.++++.+.. +-+...+..+..+..+.|-...|.++.
T Consensus 187 ~AL~~~ekll~~~------P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~ 260 (822)
T PRK14574 187 DALQASSEAVRLA------PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSE 260 (822)
T ss_pred HHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccc
Confidence 6999999999884 334445555555555555433333222
Q ss_pred --------------HHHHH-cCCCCch-hHH----HHHHHHHHhhcCHHHHHHHHHHcccCC----hhhHHHHHHHHhcc
Q 044786 141 --------------GLLFK-LGSSRNI-SLT----GSLINFYGKFRCLEDADFVFSQLKRHN----TVVWTAKIVNNCRE 196 (340)
Q Consensus 141 --------------~~~~~-~~~~~~~-~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~li~~~~~~ 196 (340)
+.+.. .+..|.. ..| .--+-++...+++.++.+.|+.+.... ..+-..+..+|...
T Consensus 261 ~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~ 340 (822)
T PRK14574 261 TERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDR 340 (822)
T ss_pred hhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhc
Confidence 22221 1111211 111 122445667788888888888887442 23456778899999
Q ss_pred CchhHHHHHHHHHhhcc-----cCCChhhHHHHHHhcccCCchhchHHHHHHHHHHhCC-----------CccH---HHH
Q 044786 197 GHFHQVFNDFKEMGRER-----IKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGL-----------ESDE---YVQ 257 (340)
Q Consensus 197 ~~~~~a~~~~~~m~~~~-----~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~---~~~ 257 (340)
+++++|..+|+++.... ..++......|.-++...+++++ |..+.+.+.+... .||+ ..+
T Consensus 341 ~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~-A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~ 419 (822)
T PRK14574 341 RLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDK-AYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQ 419 (822)
T ss_pred CCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHH-HHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHH
Confidence 99999999999986642 12233335778889999999977 8888887776311 1211 233
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhhc--CCcHHHHHHHHHHHHHcCchHHHHHHHHHHHHcCCccch-hHHHHHHHHhhhc
Q 044786 258 CGLVDMYGKCRLLRDAERVFELIVD--KKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQE-SLINDLRIACSSI 334 (340)
Q Consensus 258 ~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~-~t~~~ll~a~~~~ 334 (340)
..++..+...|++.+|++.++++.. +.|......+...+...|++++|++.++..... .|+. .+......+.-..
T Consensus 420 ~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~al~l 497 (822)
T PRK14574 420 TLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILERAQAETAMAL 497 (822)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHhh
Confidence 4567778889999999999999876 358888889999999999999999999776544 4443 3444444444444
Q ss_pred C
Q 044786 335 S 335 (340)
Q Consensus 335 g 335 (340)
|
T Consensus 498 ~ 498 (822)
T PRK14574 498 Q 498 (822)
T ss_pred h
Confidence 3
No 35
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.50 E-value=5.9e-11 Score=111.52 Aligned_cols=255 Identities=12% Similarity=-0.026 Sum_probs=183.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHhhcCcCCcccHHHHHHHH--HcccChhHHHHHHHHHHHhhcCCccccchHHHHHH
Q 044786 45 TLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGY--VDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVC 122 (340)
Q Consensus 45 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ 122 (340)
+...|..+..++.. ++.++|...+.+.....+..++.+..++ ...|++++|...|+++... +|+...+..
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~-------~p~~~a~~~ 547 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLH-------DMSNEDLLA 547 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-------CCCcHHHHH
Confidence 56677777777766 7888899877776643333445444444 5789999999999987655 444555667
Q ss_pred HHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHccc--CChhhHHHHHHHHhccCchh
Q 044786 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR--HNTVVWTAKIVNNCREGHFH 200 (340)
Q Consensus 123 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~ 200 (340)
+..++.+.|++++|.+.++...+.... +...+..+.....+.|++++|...+++..+ |+...|..+...+.+.|+++
T Consensus 548 la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~d 626 (987)
T PRK09782 548 AANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVP 626 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHH
Confidence 778888899999999999988877532 333333344444556999999999998763 56677888888999999999
Q ss_pred HHHHHHHHHhhcccCCC-hhhHHHHHHhcccCCchhchHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHH
Q 044786 201 QVFNDFKEMGRERIKKN-SYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFEL 279 (340)
Q Consensus 201 ~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 279 (340)
+|+..+++.... .|+ ...+..+-.++...|+.++ +...++...+.. +-+...+..+..++...|++++|+..+++
T Consensus 627 eA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~ee-Ai~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~ 702 (987)
T PRK09782 627 AAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQ-SREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARL 702 (987)
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHH-HHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999998875 465 4455666678888899866 666777666542 34677888899999999999999999998
Q ss_pred hhc-CCc-HHHHHHHHHHHHHcCchHHHHHHHHHH
Q 044786 280 IVD-KKN-IASWNAMLVGYIRNGLYVEATKFLYLM 312 (340)
Q Consensus 280 ~~~-~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m 312 (340)
... .|+ ..+.-.......+..+++.|.+-+++-
T Consensus 703 Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~ 737 (987)
T PRK09782 703 VIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRR 737 (987)
T ss_pred HHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 875 343 344444555556666677777666554
No 36
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.49 E-value=1.2e-11 Score=101.75 Aligned_cols=271 Identities=11% Similarity=0.069 Sum_probs=206.3
Q ss_pred HHhcCChhHHHHHHhhcCcCCcccHHH-----HHHHHHc-ccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhh
Q 044786 56 HVSCGQLDTARQLFDEMPLRDFNSWAV-----MIVGYVD-VADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVC 129 (340)
Q Consensus 56 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-----li~~~~~-~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~ 129 (340)
+.+.|+++.|.+++.-+.++|..+-.+ .+--|.. ..++..|.+.-+..+..+ +.+......-.+....
T Consensus 429 ~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d------ryn~~a~~nkgn~~f~ 502 (840)
T KOG2003|consen 429 LLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID------RYNAAALTNKGNIAFA 502 (840)
T ss_pred HHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc------ccCHHHhhcCCceeee
Confidence 567889999999988887665543222 2222222 346777877777776654 5566666666666777
Q ss_pred ccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHcc---cCChhhHHHHHHHHhccCchhHHHHHH
Q 044786 130 TMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK---RHNTVVWTAKIVNNCREGHFHQVFNDF 206 (340)
Q Consensus 130 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~ 206 (340)
.|++++|.+.|++.+...-.-....||.= -.+-+.|++++|++.|-++. ..++.+...+...|-...++.+|++++
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfnig-lt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~ 581 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFNIG-LTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELL 581 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHHhc-ccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 89999999999999887655455555543 34677899999999987764 457777788888899999999999998
Q ss_pred HHHhhcccCC-ChhhHHHHHHhcccCCchhchHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhc-CC
Q 044786 207 KEMGRERIKK-NSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD-KK 284 (340)
Q Consensus 207 ~~m~~~~~~p-~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-~~ 284 (340)
-+... +.| |+...+.+-..|-+.|+-.+ +.+.+-.--+ -++-+..+...|..-|....-+++|..+|++..- +|
T Consensus 582 ~q~~s--lip~dp~ilskl~dlydqegdksq-afq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp 657 (840)
T KOG2003|consen 582 MQANS--LIPNDPAILSKLADLYDQEGDKSQ-AFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQP 657 (840)
T ss_pred HHhcc--cCCCCHHHHHHHHHHhhcccchhh-hhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCc
Confidence 66654 455 56778888889999998755 4444332222 2566889999999999999999999999998754 79
Q ss_pred cHHHHHHHHHHHH-HcCchHHHHHHHHHHHHcCCccchhHHHHHHHHhhhcCccc
Q 044786 285 NIASWNAMLVGYI-RNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISASK 338 (340)
Q Consensus 285 ~~~~~~~li~~~~-~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~a~~~~g~~~ 338 (340)
+..-|..||.+|. +.|++.+|+++|++.. +.++-|......|++-|..+|-.+
T Consensus 658 ~~~kwqlmiasc~rrsgnyqka~d~yk~~h-rkfpedldclkflvri~~dlgl~d 711 (840)
T KOG2003|consen 658 NQSKWQLMIASCFRRSGNYQKAFDLYKDIH-RKFPEDLDCLKFLVRIAGDLGLKD 711 (840)
T ss_pred cHHHHHHHHHHHHHhcccHHHHHHHHHHHH-HhCccchHHHHHHHHHhccccchh
Confidence 9999999998765 7899999999999985 458889999999999999988654
No 37
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.49 E-value=1.9e-11 Score=105.03 Aligned_cols=282 Identities=9% Similarity=-0.021 Sum_probs=212.2
Q ss_pred cchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCcC------CcccHHHHHHHHHcccChhHHH
Q 044786 24 KDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLR------DFNSWAVMIVGYVDVADYQECI 97 (340)
Q Consensus 24 ~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~a~ 97 (340)
-+.++|...|+.+..+ +.-+..+...+..+|...++.++|+++|+.+.+. +.++|.+.+.-+-+ .-+--
T Consensus 333 y~~~~A~~~~~klp~h--~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~---~v~Ls 407 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH--HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD---EVALS 407 (638)
T ss_pred HHHHHHHHHHHhhHHh--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh---hHHHH
Confidence 3678889999885544 4445567778888999999999999999998732 66678777764422 12212
Q ss_pred HHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHH
Q 044786 98 TLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQ 177 (340)
Q Consensus 98 ~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 177 (340)
-+-+.+.... +-...+|.++.+.|.-.++.+.|++.|++..+.+.. ...+|+.+..-+.....+|+|...|+.
T Consensus 408 ~Laq~Li~~~------~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~ 480 (638)
T KOG1126|consen 408 YLAQDLIDTD------PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRK 480 (638)
T ss_pred HHHHHHHhhC------CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHh
Confidence 2223334332 566789999999999999999999999999887633 678899999999999999999999999
Q ss_pred cccCChhhHHH---HHHHHhccCchhHHHHHHHHHhhcccCCC-hhhHHHHHHhcccCCchhchHHHHHHHHHHhCCCcc
Q 044786 178 LKRHNTVVWTA---KIVNNCREGHFHQVFNDFKEMGRERIKKN-SYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESD 253 (340)
Q Consensus 178 ~~~~~~~~~~~---li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (340)
....|+..||+ +...|.+.++++.|.-.|++..+ +.|. .+....+...+.+.|+.++ +..+++.......+ |
T Consensus 481 Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~-AL~~~~~A~~ld~k-n 556 (638)
T KOG1126|consen 481 ALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDK-ALQLYEKAIHLDPK-N 556 (638)
T ss_pred hhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhH-HHHHHHHHHhcCCC-C
Confidence 98888777666 56788899999999999999887 4564 4455666666777888766 77777776654322 3
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhhc-CC-cHHHHHHHHHHHHHcCchHHHHHHHHHHHHcCCccch
Q 044786 254 EYVQCGLVDMYGKCRLLRDAERVFELIVD-KK-NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQE 321 (340)
Q Consensus 254 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 321 (340)
+..--.-...+...++.++|.+.+++++. -| +...+-.+...|.+.|+.+.|+.-|--+.+..-++..
T Consensus 557 ~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 557 PLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred chhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 33333455667778999999999999987 24 6667888888999999999999888777666544444
No 38
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.48 E-value=2.2e-10 Score=105.62 Aligned_cols=283 Identities=11% Similarity=0.012 Sum_probs=201.0
Q ss_pred hhhccchhhHHHHHHHHHhhcCCCCCH--HHHHHHHHHHHhcCChhHHHHHHhhcCcCCccc-HHHH--HHHHHcccChh
Q 044786 20 CTFQKDSAGAFELLNHIRKRVNIKPTL--LFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNS-WAVM--IVGYVDVADYQ 94 (340)
Q Consensus 20 ~~~~~~~~~a~~~~~~m~~~~g~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~l--i~~~~~~g~~~ 94 (340)
..+.|+++.|++.|++..+. .|+. ..+ .++..+...|+.++|+..+++...|+... +..+ ...+...|+++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~---~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKA---GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhh---CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHH
Confidence 35889999999999999866 4553 244 88889999999999999999999764444 3334 45778889999
Q ss_pred HHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHH
Q 044786 95 ECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFV 174 (340)
Q Consensus 95 ~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 174 (340)
+|+++|+++.+.. +-+...+..++..+...++.++|++.++.+.+.. |+...+..++..+...++..+|.+.
T Consensus 120 ~Aiely~kaL~~d------P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~~ 191 (822)
T PRK14574 120 QALALWQSSLKKD------PTNPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQA 191 (822)
T ss_pred HHHHHHHHHHhhC------CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHHH
Confidence 9999999999984 3445677788889999999999999999988774 4455554554455445666669999
Q ss_pred HHHcccC---ChhhHHHHHHHHhccCchhHHHHH----------------------------------------------
Q 044786 175 FSQLKRH---NTVVWTAKIVNNCREGHFHQVFND---------------------------------------------- 205 (340)
Q Consensus 175 ~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~---------------------------------------------- 205 (340)
++++.+. +...+..+..+..+.|-...|.++
T Consensus 192 ~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~al 271 (822)
T PRK14574 192 SSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKAL 271 (822)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHH
Confidence 9988643 333344444444444433333332
Q ss_pred --HHHHhhc-ccCCCh-hh----HHHHHHhcccCCchhchHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHH
Q 044786 206 --FKEMGRE-RIKKNS-YT----FSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVF 277 (340)
Q Consensus 206 --~~~m~~~-~~~p~~-~t----~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 277 (340)
++.+... +-.|.. .- ..--+-++...++..+ +..-++.+...+.+....+-..+.++|...+++++|..++
T Consensus 272 a~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~-vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~ 350 (822)
T PRK14574 272 ADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTAD-LIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPIL 350 (822)
T ss_pred HHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHH-HHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 3332221 111221 11 1223445566677755 7777788887777666677888999999999999999999
Q ss_pred HHhhcC--------CcHHHHHHHHHHHHHcCchHHHHHHHHHHHHc
Q 044786 278 ELIVDK--------KNIASWNAMLVGYIRNGLYVEATKFLYLMKAS 315 (340)
Q Consensus 278 ~~~~~~--------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 315 (340)
+.+... ++......|.-+|...+++++|..+++++.+.
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~ 396 (822)
T PRK14574 351 SSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQ 396 (822)
T ss_pred HHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence 998542 13334577899999999999999999999873
No 39
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.48 E-value=6.7e-12 Score=110.85 Aligned_cols=247 Identities=10% Similarity=0.002 Sum_probs=171.7
Q ss_pred CCCCCCCCCcchhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCcCCcccH
Q 044786 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSW 80 (340)
Q Consensus 1 M~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 80 (340)
|+..|+.|+..||..+|..||..|+.+.|- +|..|+-. .++.+...++.++.++.+.++.+.+. +|...+|
T Consensus 16 ~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~k-sLpv~e~vf~~lv~sh~~And~Enpk-------ep~aDty 86 (1088)
T KOG4318|consen 16 HEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIK-SLPVREGVFRGLVASHKEANDAENPK-------EPLADTY 86 (1088)
T ss_pred HHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcc-cccccchhHHHHHhcccccccccCCC-------CCchhHH
Confidence 456799999999999999999999999999 99999988 88889999999999999999988776 7888899
Q ss_pred HHHHHHHHcccChhHHHHHHHH-HHH-------hhcCC------------ccccchHHHHHHHHHHhhhccchhhHHHHH
Q 044786 81 AVMIVGYVDVADYQECITLFAE-MMK-------RKKGH------------MLLVFPAWIIVCVLKACVCTMNMELGKQVH 140 (340)
Q Consensus 81 ~~li~~~~~~g~~~~a~~~~~~-m~~-------~~~~~------------~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 140 (340)
..|..+|...||... .+..++ +.. .|.|. +.+-||.. .++.-....|-++.+++++
T Consensus 87 t~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~eglwaqllkll 162 (1088)
T KOG4318|consen 87 TNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGLWAQLLKLL 162 (1088)
T ss_pred HHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHHHHHHHHHH
Confidence 999999999998765 222222 222 11111 00111111 1111222223333333333
Q ss_pred HHHHHcCCCCchhHHHHH---HHHHHhh-cCHHHHHHHHHHccc-CChhhHHHHHHHHhccCchhHHHHHHHHHhhcccC
Q 044786 141 GLLFKLGSSRNISLTGSL---INFYGKF-RCLEDADFVFSQLKR-HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIK 215 (340)
Q Consensus 141 ~~~~~~~~~~~~~~~~~l---~~~~~~~-~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 215 (340)
..+ |...-++.. ++-.... ..+++-..+.+...+ ++..+|.+++.+-...|+.+.|..++.+|.+.|++
T Consensus 163 ~~~------Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfp 236 (1088)
T KOG4318|consen 163 AKV------PVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFP 236 (1088)
T ss_pred hhC------CcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCC
Confidence 222 222111111 2222221 224444444444444 78889999999999999999999999999999998
Q ss_pred CChhhHHHHHHhcccCCchhchHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCH
Q 044786 216 KNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLL 270 (340)
Q Consensus 216 p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 270 (340)
.+..-|..++-+ .++. ..+..+.+.|...|+.|+..|+...+..+.+.|..
T Consensus 237 ir~HyFwpLl~g---~~~~-q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t 287 (1088)
T KOG4318|consen 237 IRAHYFWPLLLG---INAA-QVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQT 287 (1088)
T ss_pred cccccchhhhhc---Cccc-hHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhh
Confidence 887777777766 4554 44788889999999999999998888877775553
No 40
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=4.2e-10 Score=92.99 Aligned_cols=304 Identities=12% Similarity=0.098 Sum_probs=225.4
Q ss_pred HHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCcCCc------ccHHHHHHHHHc
Q 044786 16 LIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDF------NSWAVMIVGYVD 89 (340)
Q Consensus 16 li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~li~~~~~ 89 (340)
+..++......+++.+=.+..... |++-+...-+....+.-...++|+|+.+|+++.+.|+ .+|..++-.--.
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~-gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~ 311 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSV-GFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-cCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh
Confidence 445555666888888888888888 8887776666666677778899999999999986544 456655433322
Q ss_pred ccChhHHHHHHH-HHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCH
Q 044786 90 VADYQECITLFA-EMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168 (340)
Q Consensus 90 ~g~~~~a~~~~~-~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 168 (340)
.. .+..+. ...+.+ +....|+.++.+-|.-.++.+.|...|+..++.+.. ....|+.+.+-|....+.
T Consensus 312 ~s----kLs~LA~~v~~id------KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt 380 (559)
T KOG1155|consen 312 KS----KLSYLAQNVSNID------KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNT 380 (559)
T ss_pred hH----HHHHHHHHHHHhc------cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhccc
Confidence 11 112222 222222 556678888888899999999999999999988755 566888899999999999
Q ss_pred HHHHHHHHHccc---CChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCC-ChhhHHHHHHhcccCCchhchHHHHHHH
Q 044786 169 EDADFVFSQLKR---HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKK-NSYTFSSVLKACGGVDDDGNCGRQMHAN 244 (340)
Q Consensus 169 ~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~~~~~~~~~~~~~~ 244 (340)
..|.+.|+...+ .|-..|-.+.++|...+.+.=|+-+|++..+ ++| |...|.++-..|.+.++.++ |...+..
T Consensus 381 ~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~e-AiKCykr 457 (559)
T KOG1155|consen 381 HAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEE-AIKCYKR 457 (559)
T ss_pred HHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHH-HHHHHHH
Confidence 999999998764 4777888899999999999999999999887 456 57788999999999999988 7777776
Q ss_pred HHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhc--------CC-cHHHHHHHHHHHHHcCchHHHHHHHHHHHHc
Q 044786 245 IVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD--------KK-NIASWNAMLVGYIRNGLYVEATKFLYLMKAS 315 (340)
Q Consensus 245 ~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--------~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 315 (340)
....| ..+...+..|.+.|-+.++..+|-..|+.-.. .| .+..---|..-+.+.+++++|........ .
T Consensus 458 ai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~-~ 535 (559)
T KOG1155|consen 458 AILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL-K 535 (559)
T ss_pred HHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh-c
Confidence 66655 34668888999999999999999888876654 12 12222225566778899999877665553 3
Q ss_pred CCccchhHHHHHHHHhhhcCcc
Q 044786 316 GIQIQESLINDLRIACSSISAS 337 (340)
Q Consensus 316 g~~~~~~t~~~ll~a~~~~g~~ 337 (340)
| .+...--+.|++.|.+.-.+
T Consensus 536 ~-~~e~eeak~LlReir~~~~p 556 (559)
T KOG1155|consen 536 G-ETECEEAKALLREIRKIQAP 556 (559)
T ss_pred C-CchHHHHHHHHHHHHHhcCC
Confidence 4 67777778888887765543
No 41
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.46 E-value=3.9e-10 Score=100.21 Aligned_cols=296 Identities=11% Similarity=0.053 Sum_probs=228.4
Q ss_pred cchhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhc---CcCCcccHHHHHHH
Q 044786 10 TDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEM---PLRDFNSWAVMIVG 86 (340)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~li~~ 86 (340)
....-...+.....|+.++|.+++..+.+. -+.+...|..|...|-..|+.+++...+-.. .+.|...|-.+...
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkq--dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladl 216 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQ--DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADL 216 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 333444444555569999999999999987 5667889999999999999999998876543 35577789999999
Q ss_pred HHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHH----HHHHHHH
Q 044786 87 YVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLT----GSLINFY 162 (340)
Q Consensus 87 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~ 162 (340)
....|+++.|.-+|.+.++.. +++...+-.=...|-+.|+...|...|.++.+...+.|..-. -..+..+
T Consensus 217 s~~~~~i~qA~~cy~rAI~~~------p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~ 290 (895)
T KOG2076|consen 217 SEQLGNINQARYCYSRAIQAN------PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYF 290 (895)
T ss_pred HHhcccHHHHHHHHHHHHhcC------CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHH
Confidence 999999999999999999984 455556666677888999999999999999988654343333 2346667
Q ss_pred HhhcCHHHHHHHHHHcccC-----ChhhHHHHHHHHhccCchhHHHHHHHHHhhcc------------------------
Q 044786 163 GKFRCLEDADFVFSQLKRH-----NTVVWTAKIVNNCREGHFHQVFNDFKEMGRER------------------------ 213 (340)
Q Consensus 163 ~~~~~~~~a~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~------------------------ 213 (340)
...++.+.|.+.++..... +...++.++..|.+...++.|......+....
T Consensus 291 ~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~ 370 (895)
T KOG2076|consen 291 ITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEV 370 (895)
T ss_pred HHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccC
Confidence 7778888888888876542 45568899999999999999999988887621
Q ss_pred ---cCCChhhHHHHHHhcccCCchhchHHHHHHHHHHhCCCc--cHHHHHHHHHHHhccCCHHHHHHHHHHhhcCC---c
Q 044786 214 ---IKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLES--DEYVQCGLVDMYGKCRLLRDAERVFELIVDKK---N 285 (340)
Q Consensus 214 ---~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~---~ 285 (340)
+.++... ..+.-++.+.... +....+...+....+.| ++..|.-+.++|...|++.+|..+|..+...| +
T Consensus 371 ~~~~s~~l~v-~rl~icL~~L~~~-e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~ 448 (895)
T KOG2076|consen 371 GKELSYDLRV-IRLMICLVHLKER-ELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQN 448 (895)
T ss_pred CCCCCccchh-HhHhhhhhccccc-chHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccc
Confidence 1122222 1222233444443 44777777777777554 67889999999999999999999999998753 6
Q ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHHHHc
Q 044786 286 IASWNAMLVGYIRNGLYVEATKFLYLMKAS 315 (340)
Q Consensus 286 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 315 (340)
...|-.+..+|...|.+++|++.|+.....
T Consensus 449 ~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~ 478 (895)
T KOG2076|consen 449 AFVWYKLARCYMELGEYEEAIEFYEKVLIL 478 (895)
T ss_pred hhhhHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 778999999999999999999999998755
No 42
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.41 E-value=3.9e-10 Score=97.74 Aligned_cols=263 Identities=10% Similarity=-0.024 Sum_probs=188.7
Q ss_pred CCCcch-hHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCH--HHHHHHHHHHHhcCChhHHHHHHhhcCcC---CcccH
Q 044786 7 PITTDM-YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTL--LFLNRLLLMHVSCGQLDTARQLFDEMPLR---DFNSW 80 (340)
Q Consensus 7 ~~~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~ 80 (340)
.|++.. |-....+..+.|+.+.|.+.+....+. .|+. ...-.....+...|+++.|.+.++.+.+. +..++
T Consensus 114 ~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~---~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l 190 (409)
T TIGR00540 114 AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL---AGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVL 190 (409)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 344333 334456677889999999999998765 3444 23344578888999999999999998843 55578
Q ss_pred HHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHH-HHHH---HhhhccchhhHHHHHHHHHHcCCC---Cchh
Q 044786 81 AVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIV-CVLK---ACVCTMNMELGKQVHGLLFKLGSS---RNIS 153 (340)
Q Consensus 81 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~-~ll~---~~~~~~~~~~a~~~~~~~~~~~~~---~~~~ 153 (340)
..+...+...|++++|.+.+..+.+.+ + ++...+. .-.. .....+..+.+.+.+..+.+.... .+..
T Consensus 191 ~ll~~~~~~~~d~~~a~~~l~~l~k~~--~----~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~ 264 (409)
T TIGR00540 191 KLAEEAYIRSGAWQALDDIIDNMAKAG--L----FDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIA 264 (409)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHcC--C----CCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHH
Confidence 889999999999999999999999884 2 2222221 1111 112223333334455555444321 3778
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHcccC--Chhh---HHHHHHHHhccCchhHHHHHHHHHhhcccCCChh---hHHHHH
Q 044786 154 LTGSLINFYGKFRCLEDADFVFSQLKRH--NTVV---WTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSY---TFSSVL 225 (340)
Q Consensus 154 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~---~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---t~~~ll 225 (340)
.+..+...+...|+.++|.+++++..+. +... ...........++.+.+.+.+++..+. .|+.. ...++-
T Consensus 265 l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg 342 (409)
T TIGR00540 265 LKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALG 342 (409)
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHH
Confidence 8889999999999999999999998753 3321 122222334457888899999887764 46544 345777
Q ss_pred HhcccCCchhchHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhh
Q 044786 226 KACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIV 281 (340)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 281 (340)
..+.+.|++++ +...++........|+...+..+...+.+.|+.++|.+++++..
T Consensus 343 ~l~~~~~~~~~-A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 343 QLLMKHGEFIE-AADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHcccHHH-HHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88899999977 88888865555568999889999999999999999999999764
No 43
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.41 E-value=4.9e-10 Score=88.50 Aligned_cols=266 Identities=11% Similarity=0.008 Sum_probs=197.2
Q ss_pred cCChhHHHHHHhhcCcCCcccHH---HHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhh
Q 044786 59 CGQLDTARQLFDEMPLRDFNSWA---VMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMEL 135 (340)
Q Consensus 59 ~~~~~~a~~~~~~~~~~~~~~~~---~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 135 (340)
..+.++|.++|-+|.+-|..+|. +|.+.|-+.|..+.|+++-..+.+.. +. .+.--......|.+-|...|-+|.
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~sp-dl-T~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESP-DL-TFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCC-CC-chHHHHHHHHHHHHHHHHhhhhhH
Confidence 47899999999999987777665 47788889999999999999988763 21 011122356677788889999999
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHcccCChhhHHH--------HHHHHhccCchhHHHHHHH
Q 044786 136 GKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTA--------KIVNNCREGHFHQVFNDFK 207 (340)
Q Consensus 136 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--------li~~~~~~~~~~~a~~~~~ 207 (340)
|+.+|..+.+.|.- -......|+..|-...+|++|.++-+++.+.+...|+. +...+....++++|..+++
T Consensus 126 AE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 126 AEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 99999999886532 34466788999999999999999998887665544444 4444445688999999999
Q ss_pred HHhhcccCCChhhHH-HHHHhcccCCchhchHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhc-CCc
Q 044786 208 EMGRERIKKNSYTFS-SVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD-KKN 285 (340)
Q Consensus 208 ~m~~~~~~p~~~t~~-~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-~~~ 285 (340)
+..+.. |+.+--+ .+-......|++.. +...++.+.+.+..--+.+...|..+|.+.|+.++...++.++.. .+.
T Consensus 205 kAlqa~--~~cvRAsi~lG~v~~~~g~y~~-AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 205 KALQAD--KKCVRASIILGRVELAKGDYQK-AVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG 281 (389)
T ss_pred HHHhhC--ccceehhhhhhHHHHhccchHH-HHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence 987753 4433333 34455778899855 778888888887777788889999999999999999999988876 344
Q ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHHHHcCCccchhHHHHHHHHhh
Q 044786 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332 (340)
Q Consensus 286 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~a~~ 332 (340)
...-..+-.--....-.+.|...+.+-..+ +|+..-|..++..=.
T Consensus 282 ~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l 326 (389)
T COG2956 282 ADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHL 326 (389)
T ss_pred ccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhh
Confidence 444444444444445566676666665544 788888888887543
No 44
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=7.8e-10 Score=91.43 Aligned_cols=288 Identities=12% Similarity=0.062 Sum_probs=213.2
Q ss_pred CCCCCCcchhHHHHHHhhhccchhhHHHHHHHHHhhcCCC-CCHHHHHHHHHHHHhcCChhHHHHHHhhcCcCCcccHHH
Q 044786 4 LCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIK-PTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAV 82 (340)
Q Consensus 4 ~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 82 (340)
.|++.+...-+....+.-...|+++|+.+|+.+.+..... .|..+|+.++.+--.+.++.---+..-.+.+=-+.|+.+
T Consensus 256 ~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCi 335 (559)
T KOG1155|consen 256 VGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCI 335 (559)
T ss_pred ccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceee
Confidence 3566555555555555667789999999999999873222 267888888866555444433222222333334668888
Q ss_pred HHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 044786 83 MIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFY 162 (340)
Q Consensus 83 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 162 (340)
+.+-|+-.++.++|...|++.++.+ +.....|+.+..-|....+...|.+-|+..++..+. |-..|-.|.++|
T Consensus 336 IaNYYSlr~eHEKAv~YFkRALkLN------p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~-DyRAWYGLGQaY 408 (559)
T KOG1155|consen 336 IANYYSLRSEHEKAVMYFKRALKLN------PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR-DYRAWYGLGQAY 408 (559)
T ss_pred ehhHHHHHHhHHHHHHHHHHHHhcC------cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch-hHHHHhhhhHHH
Confidence 8899999999999999999999885 566778999999999999999999999999988744 888999999999
Q ss_pred HhhcCHHHHHHHHHHcc---cCChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCChhhHHHHHHhcccCCchhchHH
Q 044786 163 GKFRCLEDADFVFSQLK---RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGR 239 (340)
Q Consensus 163 ~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~ 239 (340)
.-.+...-|+-.|++.. ..|...|.+|.++|.+.++.++|++.|++....|- .+...+..+.+.|-+.++..+ |.
T Consensus 409 eim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-te~~~l~~LakLye~l~d~~e-Aa 486 (559)
T KOG1155|consen 409 EIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-TEGSALVRLAKLYEELKDLNE-AA 486 (559)
T ss_pred HHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHhHHH-HH
Confidence 99999999999999875 33889999999999999999999999999988652 355778899999999999977 44
Q ss_pred HHHHHHHH----hCC-Cc-cHHHHHHHHHHHhccCCHHHHHHHHHHhhcCCcHHHHHHHHHHHHHcCchHHHHHHHHHHH
Q 044786 240 QMHANIVK----IGL-ES-DEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMK 313 (340)
Q Consensus 240 ~~~~~~~~----~~~-~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 313 (340)
..+....+ .|. .| .......|..-+.+.+++++|......... + ....++|..++++..
T Consensus 487 ~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~-------------~--~~e~eeak~LlReir 551 (559)
T KOG1155|consen 487 QYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK-------------G--ETECEEAKALLREIR 551 (559)
T ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc-------------C--CchHHHHHHHHHHHH
Confidence 44443332 232 23 333444466667777888877765554432 1 334677777777765
Q ss_pred Hc
Q 044786 314 AS 315 (340)
Q Consensus 314 ~~ 315 (340)
..
T Consensus 552 ~~ 553 (559)
T KOG1155|consen 552 KI 553 (559)
T ss_pred Hh
Confidence 43
No 45
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.37 E-value=2.9e-10 Score=90.79 Aligned_cols=194 Identities=8% Similarity=0.005 Sum_probs=121.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHhhcCcC---CcccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHH
Q 044786 45 TLLFLNRLLLMHVSCGQLDTARQLFDEMPLR---DFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIV 121 (340)
Q Consensus 45 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~ 121 (340)
....+..+...+...|++++|.+.+++..+. +...+..+...+...|++++|.+.+++..+.. +.+...+.
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------~~~~~~~~ 103 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN------PNNGDVLN 103 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------CCCHHHHH
Confidence 3455666667777777777777777765522 33455666667777777777777777776663 33445666
Q ss_pred HHHHHhhhccchhhHHHHHHHHHHcCCCC-chhHHHHHHHHHHhhcCHHHHHHHHHHcccC---ChhhHHHHHHHHhccC
Q 044786 122 CVLKACVCTMNMELGKQVHGLLFKLGSSR-NISLTGSLINFYGKFRCLEDADFVFSQLKRH---NTVVWTAKIVNNCREG 197 (340)
Q Consensus 122 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~ 197 (340)
.+...+...|++++|.+.++...+....+ ....+..+...+...|++++|...+++..+. +...+..+...+...|
T Consensus 104 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 183 (234)
T TIGR02521 104 NYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRG 183 (234)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcC
Confidence 66677777777777777777766543222 3345555666777777777777777765432 3445666677777777
Q ss_pred chhHHHHHHHHHhhcccCCChhhHHHHHHhcccCCchhchHHHHHHHHH
Q 044786 198 HFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIV 246 (340)
Q Consensus 198 ~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~ 246 (340)
++++|...+++..+. .+.+...+..+...+...|+.++ +..+.+.+.
T Consensus 184 ~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-a~~~~~~~~ 230 (234)
T TIGR02521 184 QYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAA-AQRYGAQLQ 230 (234)
T ss_pred CHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHH-HHHHHHHHH
Confidence 777777777777664 22334445555566666666644 555555443
No 46
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.35 E-value=2.7e-10 Score=98.12 Aligned_cols=261 Identities=13% Similarity=0.033 Sum_probs=197.5
Q ss_pred chhHHHHHHhhhccchhhHHHHHHHHHhhcCC-CCCHHHHHHHHHHHHhcCChhH-HHHHHhhcCcCCcccHHHHHHHHH
Q 044786 11 DMYTCLIKECTFQKDSAGAFELLNHIRKRVNI-KPTLLFLNRLLLMHVSCGQLDT-ARQLFDEMPLRDFNSWAVMIVGYV 88 (340)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~-~~~~~~~~~li~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~li~~~~ 88 (340)
.....+-.+|...+++++|..+|+.+.+.... --+..+|.+.+-.+-+.=.+.- |.++.+ +....+.+|.++..+|.
T Consensus 354 wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~-~~~~sPesWca~GNcfS 432 (638)
T KOG1126|consen 354 WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLID-TDPNSPESWCALGNCFS 432 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHh-hCCCCcHHHHHhcchhh
Confidence 34567888999999999999999999876322 2267888888865544322222 222222 22446789999999999
Q ss_pred cccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCH
Q 044786 89 DVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168 (340)
Q Consensus 89 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 168 (340)
-+++.+.|++.|++..+.+ +-...+|+.+..=+.....+|.|...|+..+..... +...|.-+.-.|.+.+++
T Consensus 433 LQkdh~~Aik~f~RAiQld------p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r-hYnAwYGlG~vy~Kqek~ 505 (638)
T KOG1126|consen 433 LQKDHDTAIKCFKRAIQLD------PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR-HYNAWYGLGTVYLKQEKL 505 (638)
T ss_pred hhhHHHHHHHHHHHhhccC------CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch-hhHHHHhhhhheeccchh
Confidence 9999999999999999884 448889999999999999999999999987765422 344555678899999999
Q ss_pred HHHHHHHHHcccC---ChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCChhhHHHHHHhcccCCchhchHHHHHHHH
Q 044786 169 EDADFVFSQLKRH---NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANI 245 (340)
Q Consensus 169 ~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~ 245 (340)
+.|+-.|+...+- +.+....+...+.+.|+.++|+.++++......+-...-|. ....+...++.++ +...++.+
T Consensus 506 e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~-~~~il~~~~~~~e-al~~LEeL 583 (638)
T KOG1126|consen 506 EFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH-RASILFSLGRYVE-ALQELEEL 583 (638)
T ss_pred hHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH-HHHHHHhhcchHH-HHHHHHHH
Confidence 9999999998753 55667777788889999999999999997643222223333 3344555677766 88888887
Q ss_pred HHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhc
Q 044786 246 VKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282 (340)
Q Consensus 246 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 282 (340)
+.. .+-+..++..+...|-+.|+.+.|..-|.-+.+
T Consensus 584 k~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 584 KEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 764 344667888899999999999999998887764
No 47
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.34 E-value=1e-09 Score=87.69 Aligned_cols=192 Identities=11% Similarity=0.026 Sum_probs=116.0
Q ss_pred cHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHH
Q 044786 79 SWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158 (340)
Q Consensus 79 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 158 (340)
.+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.++...+.... +...+..+
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~ 105 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHD------PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNY 105 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHH
Confidence 46667777777888888888888777663 334556666777777777777777777777665433 34455556
Q ss_pred HHHHHhhcCHHHHHHHHHHcccC-----ChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCChhhHHHHHHhcccCCc
Q 044786 159 INFYGKFRCLEDADFVFSQLKRH-----NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDD 233 (340)
Q Consensus 159 ~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~ 233 (340)
...+...|++++|.+.+++..+. ....+..+...+...|++++|...+++..+.. |
T Consensus 106 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~----------------- 166 (234)
T TIGR02521 106 GTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID--P----------------- 166 (234)
T ss_pred HHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--c-----------------
Confidence 66666666666666666665431 12234444555555555555555555554421 2
Q ss_pred hhchHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhc--CCcHHHHHHHHHHHHHcCchHHHHHHHHH
Q 044786 234 DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD--KKNIASWNAMLVGYIRNGLYVEATKFLYL 311 (340)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 311 (340)
.+...+..+...+...|++++|...+++... +.+...+..+...+...|+.++|..+.+.
T Consensus 167 ------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 228 (234)
T TIGR02521 167 ------------------QRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQ 228 (234)
T ss_pred ------------------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 1233444555566666666666666666544 23445555566666666777777766666
Q ss_pred HHH
Q 044786 312 MKA 314 (340)
Q Consensus 312 m~~ 314 (340)
+..
T Consensus 229 ~~~ 231 (234)
T TIGR02521 229 LQK 231 (234)
T ss_pred HHh
Confidence 543
No 48
>PRK12370 invasion protein regulator; Provisional
Probab=99.30 E-value=1.2e-09 Score=98.41 Aligned_cols=257 Identities=8% Similarity=-0.061 Sum_probs=159.7
Q ss_pred CHHHHHHHHHHHHh-----cCChhHHHHHHhhcCcCCc---ccHHHHHHHHH---------cccChhHHHHHHHHHHHhh
Q 044786 45 TLLFLNRLLLMHVS-----CGQLDTARQLFDEMPLRDF---NSWAVMIVGYV---------DVADYQECITLFAEMMKRK 107 (340)
Q Consensus 45 ~~~~~~~li~~~~~-----~~~~~~a~~~~~~~~~~~~---~~~~~li~~~~---------~~g~~~~a~~~~~~m~~~~ 107 (340)
+...|...+.+-.. .+++++|.++|++..+.|+ ..|..+..++. ..+++++|...+++..+.+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld 334 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD 334 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC
Confidence 44555555554321 1346788888887774433 24544444433 2244778888888888774
Q ss_pred cCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHcccCCh---h
Q 044786 108 KGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNT---V 184 (340)
Q Consensus 108 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~ 184 (340)
+-+...+..+...+...|++++|...+++..+.++. +...+..+...+...|++++|...+++..+.+. .
T Consensus 335 ------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~ 407 (553)
T PRK12370 335 ------HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAA 407 (553)
T ss_pred ------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChh
Confidence 445667777777778888888888888888877643 455677778888888888888888888764322 2
Q ss_pred hHHHHHHHHhccCchhHHHHHHHHHhhcccCCC-hhhHHHHHHhcccCCchhchHHHHHHHHHHhCCCccHHHHHHHHHH
Q 044786 185 VWTAKIVNNCREGHFHQVFNDFKEMGRERIKKN-SYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDM 263 (340)
Q Consensus 185 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 263 (340)
.+..+...+...|++++|...+++..... .|+ ...+..+-.++...|+.++ |...+..+... .+.+....+.+...
T Consensus 408 ~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~e-A~~~~~~~~~~-~~~~~~~~~~l~~~ 484 (553)
T PRK12370 408 AGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHEL-ARKLTKEISTQ-EITGLIAVNLLYAE 484 (553)
T ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHH-HHHHHHHhhhc-cchhHHHHHHHHHH
Confidence 33334445666788888888888876543 243 3335556666777888876 55555554432 12233444555566
Q ss_pred HhccCCHHHHHHHHHHhhc----CCcHHHHHHHHHHHHHcCchHHHHHHHHHHHHcC
Q 044786 264 YGKCRLLRDAERVFELIVD----KKNIASWNAMLVGYIRNGLYVEATKFLYLMKASG 316 (340)
Q Consensus 264 ~~~~~~~~~A~~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 316 (340)
|+..| +.|...++.+.+ .+....+ +-..|.-.|+.+.+..+ +++.+.|
T Consensus 485 ~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 485 YCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 67666 467776666654 2322233 33344456666666665 7776664
No 49
>PRK12370 invasion protein regulator; Provisional
Probab=99.28 E-value=2.9e-09 Score=95.89 Aligned_cols=228 Identities=11% Similarity=-0.005 Sum_probs=163.6
Q ss_pred CcccHHHHHHHHHc-----ccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhh---------hccchhhHHHHHH
Q 044786 76 DFNSWAVMIVGYVD-----VADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACV---------CTMNMELGKQVHG 141 (340)
Q Consensus 76 ~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~---------~~~~~~~a~~~~~ 141 (340)
+...|...+++-.. .+.+++|.+.|++..+.. +-+...|..+..++. ..+++++|...++
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld------P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~ 328 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS------PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAI 328 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC------CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHH
Confidence 44456566665322 245679999999999883 233445555544443 2345889999999
Q ss_pred HHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHccc--C-ChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCCh
Q 044786 142 LLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR--H-NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218 (340)
Q Consensus 142 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 218 (340)
+..+.... +...+..+...+...|++++|...|++..+ | +...+..+...+...|++++|+..+++..+. .|+.
T Consensus 329 ~Al~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~ 405 (553)
T PRK12370 329 KATELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTR 405 (553)
T ss_pred HHHhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCC
Confidence 99988754 677888888899999999999999999764 3 4567888899999999999999999999885 4543
Q ss_pred h-hHHHHHHhcccCCchhchHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhcC-C-cHHHHHHHHHH
Q 044786 219 Y-TFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK-K-NIASWNAMLVG 295 (340)
Q Consensus 219 ~-t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~li~~ 295 (340)
. .+......+...|++++ +...++.......+-++..+..+..+|...|++++|...++++... | +...++.+...
T Consensus 406 ~~~~~~~~~~~~~~g~~ee-A~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~ 484 (553)
T PRK12370 406 AAAGITKLWITYYHTGIDD-AIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAE 484 (553)
T ss_pred hhhHHHHHHHHHhccCHHH-HHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHH
Confidence 2 23334444566788866 6666666655432335556777888899999999999999998653 3 34455666667
Q ss_pred HHHcCchHHHHHHHHHHHHc
Q 044786 296 YIRNGLYVEATKFLYLMKAS 315 (340)
Q Consensus 296 ~~~~~~~~~a~~~~~~m~~~ 315 (340)
|+..| ++|...++.+.+.
T Consensus 485 ~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 485 YCQNS--ERALPTIREFLES 502 (553)
T ss_pred HhccH--HHHHHHHHHHHHH
Confidence 78777 4777877776543
No 50
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.26 E-value=3.7e-08 Score=88.00 Aligned_cols=298 Identities=11% Similarity=0.062 Sum_probs=226.4
Q ss_pred CCCcchhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCcCCcccHHH---H
Q 044786 7 PITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAV---M 83 (340)
Q Consensus 7 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---l 83 (340)
|.....|.+|...|-+.|+.+++...+-..-.. .+-|...|..+-....+.|.++.|.-+|.+..+.++.-|.. -
T Consensus 170 p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL--~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~er 247 (895)
T KOG2076|consen 170 PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL--NPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYER 247 (895)
T ss_pred ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 556778999999999999999999887555433 45577899999999999999999999999988655554443 4
Q ss_pred HHHHHcccChhHHHHHHHHHHHhhcCCccccc-hHH----HHHHHHHHhhhccchhhHHHHHHHHHHc-CCCCchhHHHH
Q 044786 84 IVGYVDVADYQECITLFAEMMKRKKGHMLLVF-PAW----IIVCVLKACVCTMNMELGKQVHGLLFKL-GSSRNISLTGS 157 (340)
Q Consensus 84 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~-~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ 157 (340)
+..|-+.|+...|...|.++.+.. +| |.. .-..+++.+...++.+.|.+.++..... +-..+...++.
T Consensus 248 s~L~~~~G~~~~Am~~f~~l~~~~------p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni 321 (895)
T KOG2076|consen 248 SSLYQKTGDLKRAMETFLQLLQLD------PPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNI 321 (895)
T ss_pred HHHHHHhChHHHHHHHHHHHHhhC------CchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHH
Confidence 567888999999999999999883 22 222 3334456666677778888888877653 22345667889
Q ss_pred HHHHHHhhcCHHHHHHHHHHccc----C----------------------ChhhHH----HHHHHHhccCchhHHHHHHH
Q 044786 158 LINFYGKFRCLEDADFVFSQLKR----H----------------------NTVVWT----AKIVNNCREGHFHQVFNDFK 207 (340)
Q Consensus 158 l~~~~~~~~~~~~a~~~~~~~~~----~----------------------~~~~~~----~li~~~~~~~~~~~a~~~~~ 207 (340)
+...|.+...++.|......+.. + +..+|+ -+.-++.+.+..+....+..
T Consensus 322 ~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~ 401 (895)
T KOG2076|consen 322 LAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLH 401 (895)
T ss_pred HHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHH
Confidence 99999999999999887766643 1 111121 23344555566666666666
Q ss_pred HHhhcccCC--ChhhHHHHHHhcccCCchhchHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhc-CC
Q 044786 208 EMGRERIKK--NSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD-KK 284 (340)
Q Consensus 208 ~m~~~~~~p--~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-~~ 284 (340)
-+.+..+.| +...|--+..++...|++.+ |..++..+......-+..+|-.+..+|-..|.+++|.+.++.... .|
T Consensus 402 ~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~-Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p 480 (895)
T KOG2076|consen 402 FLVEDNVWVSDDVDLYLDLADALTNIGKYKE-ALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAP 480 (895)
T ss_pred HHHHhcCChhhhHHHHHHHHHHHHhcccHHH-HHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 677766545 35668889999999999977 888888888776666788999999999999999999999999876 34
Q ss_pred -cHHHHHHHHHHHHHcCchHHHHHHHHHHH
Q 044786 285 -NIASWNAMLVGYIRNGLYVEATKFLYLMK 313 (340)
Q Consensus 285 -~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 313 (340)
+...--+|-..+-+.|+.++|.+++..|.
T Consensus 481 ~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 481 DNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred CchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 55556667778899999999999999964
No 51
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.24 E-value=4.8e-09 Score=90.84 Aligned_cols=232 Identities=9% Similarity=0.034 Sum_probs=174.7
Q ss_pred cHHHHHHHHHcccChhHHHHHHHHHHHh---hcCCccccchHH-HHHHHHHHhhhccchhhHHHHHHHHHHc-----CC-
Q 044786 79 SWAVMIVGYVDVADYQECITLFAEMMKR---KKGHMLLVFPAW-IIVCVLKACVCTMNMELGKQVHGLLFKL-----GS- 148 (340)
Q Consensus 79 ~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~- 148 (340)
+...+...|...|+++.|+.++++..+. ..|. ..|... ..+.+...|...+++++|..+|+++.+. |-
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~--~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGL--KHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCc--cCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 4556888999999999999999988766 1122 144444 3445778888999999999999988754 21
Q ss_pred CC-chhHHHHHHHHHHhhcCHHHHHHHHHHccc----------CCh-hhHHHHHHHHhccCchhHHHHHHHHHhhc---c
Q 044786 149 SR-NISLTGSLINFYGKFRCLEDADFVFSQLKR----------HNT-VVWTAKIVNNCREGHFHQVFNDFKEMGRE---R 213 (340)
Q Consensus 149 ~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----------~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~ 213 (340)
.| -..+++.|..+|.+.|++++|...++...+ +.+ .-++.+...|+..+++++|..+++...+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 12 234677788899999999999888877542 122 23777888999999999999999876542 1
Q ss_pred cCCC----hhhHHHHHHhcccCCchhchHHHHHHHHHHhC----C---CccHHHHHHHHHHHhccCCHHHHHHHHHHhhc
Q 044786 214 IKKN----SYTFSSVLKACGGVDDDGNCGRQMHANIVKIG----L---ESDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282 (340)
Q Consensus 214 ~~p~----~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 282 (340)
+.++ ..+++.+-..|.+.|++.+ +..+++...... - .-....++.|-..|.+.+++++|.++|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~e-a~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKE-AEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD 437 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhH-HHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 2333 3578899999999999988 777776654331 2 22356778899999999999999999987764
Q ss_pred --------CC-cHHHHHHHHHHHHHcCchHHHHHHHHHHH
Q 044786 283 --------KK-NIASWNAMLVGYIRNGLYVEATKFLYLMK 313 (340)
Q Consensus 283 --------~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 313 (340)
.| ...+|..|...|.+.|++++|.++.+...
T Consensus 438 i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 438 IMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 23 34689999999999999999999887764
No 52
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.24 E-value=3.3e-08 Score=80.56 Aligned_cols=273 Identities=8% Similarity=0.030 Sum_probs=195.0
Q ss_pred HHHHHHHh--cCChhHHHHHHhhcCcCCcc---cHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHH
Q 044786 51 RLLLMHVS--CGQLDTARQLFDEMPLRDFN---SWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLK 125 (340)
Q Consensus 51 ~li~~~~~--~~~~~~a~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~ 125 (340)
.+..+..+ .|++..|+++..+-.+.... .|-.-..+--..|+.+.+-+.+.+..+.. . .++...+-...+
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~--~---~~~l~v~ltrar 161 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELA--G---DDTLAVELTRAR 161 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccC--C---CchHHHHHHHHH
Confidence 34444433 48899999888776543222 34444566677788999999888887761 1 345556667777
Q ss_pred HhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHcccCC-----------hhhHHHHHHHHh
Q 044786 126 ACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN-----------TVVWTAKIVNNC 194 (340)
Q Consensus 126 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----------~~~~~~li~~~~ 194 (340)
.....|+++.|..-.+.+.+.+.. ++........+|.+.|++.+...++..+.+.. -.+|+.++.-..
T Consensus 162 lll~~~d~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~ 240 (400)
T COG3071 162 LLLNRRDYPAARENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQAR 240 (400)
T ss_pred HHHhCCCchhHHHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHh
Confidence 788888889998888888888755 56677888889999999999999988887652 235777777666
Q ss_pred ccCchhHHHHHHHHHhhcccCCChhhHHHHHHhcccCCchhchHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCHHHHH
Q 044786 195 REGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAE 274 (340)
Q Consensus 195 ~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 274 (340)
..+..+.-...|+....+ .+-++..-..++.-+...|+.++ |..+.....+.+..|+.. ..-.+.+-++.+.-.
T Consensus 241 ~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~-A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~ 314 (400)
T COG3071 241 DDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDE-AQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLI 314 (400)
T ss_pred ccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHH-HHHHHHHHHHhccChhHH----HHHhhcCCCCchHHH
Confidence 666666666667666543 34445555667777788888766 666666666666666622 222344566666655
Q ss_pred HHHHHhhc--CCcHHHHHHHHHHHHHcCchHHHHHHHHHHHHcCCccchhHHHHHHHHhhhcCcc
Q 044786 275 RVFELIVD--KKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISAS 337 (340)
Q Consensus 275 ~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~a~~~~g~~ 337 (340)
+..+.... +.++..+.+|..-|.+++.|.+|...|+.-. ...|+..+|..+-.++.+.|++
T Consensus 315 k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl--~~~~s~~~~~~la~~~~~~g~~ 377 (400)
T COG3071 315 KAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAAL--KLRPSASDYAELADALDQLGEP 377 (400)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHH--hcCCChhhHHHHHHHHHHcCCh
Confidence 55555443 2356788899999999999999999999554 5589999999999999999875
No 53
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.20 E-value=3.4e-08 Score=88.96 Aligned_cols=309 Identities=13% Similarity=0.058 Sum_probs=216.0
Q ss_pred CCcchhHHHHHHhhhccchhhHHHHHHHHH----hhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCcC-------C
Q 044786 8 ITTDMYTCLIKECTFQKDSAGAFELLNHIR----KRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLR-------D 76 (340)
Q Consensus 8 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~----~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-------~ 76 (340)
-|...|-.+...+- .++...++.+|.... .. +-++.+...|.+...+...|++++|...|...... +
T Consensus 412 ~d~~a~l~laql~e-~~d~~~sL~~~~~A~d~L~~~-~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~d 489 (1018)
T KOG2002|consen 412 VDSEAWLELAQLLE-QTDPWASLDAYGNALDILESK-GKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKD 489 (1018)
T ss_pred ccHHHHHHHHHHHH-hcChHHHHHHHHHHHHHHHHc-CCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcc
Confidence 34555655555554 344444466665543 44 66688899999999999999999999999876522 2
Q ss_pred cc------cHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHH-HHHHHHHHhhhccchhhHHHHHHHHHHcCCC
Q 044786 77 FN------SWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAW-IIVCVLKACVCTMNMELGKQVHGLLFKLGSS 149 (340)
Q Consensus 77 ~~------~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 149 (340)
.. +--.+.+.+-..++++.|.+.|..+... .|.-. .|--++......+...+|...+.+..+.. .
T Consensus 490 e~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke-------hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~ 561 (1018)
T KOG2002|consen 490 EGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE-------HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-S 561 (1018)
T ss_pred ccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH-------CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-c
Confidence 21 1222445555667899999999999988 34433 44444434444567888888888887665 2
Q ss_pred CchhHHHHHHHHHHhhcCHHHHHHHHHHccc-----CChhhHHHHHHHHhc------------cCchhHHHHHHHHHhhc
Q 044786 150 RNISLTGSLINFYGKFRCLEDADFVFSQLKR-----HNTVVWTAKIVNNCR------------EGHFHQVFNDFKEMGRE 212 (340)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~li~~~~~------------~~~~~~a~~~~~~m~~~ 212 (340)
.++..+..+.+.+.+...+..|.+-|+.+.+ +|+.+.-+|.+.|.+ .+..++|+.+|.+..+.
T Consensus 562 ~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~ 641 (1018)
T KOG2002|consen 562 SNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN 641 (1018)
T ss_pred CCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc
Confidence 3555666677788888888888886655432 244444444443332 23567888888888764
Q ss_pred ccCCChhhHHHHHHhcccCCchhchHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhc----CCcHHH
Q 044786 213 RIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD----KKNIAS 288 (340)
Q Consensus 213 ~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~----~~~~~~ 288 (340)
. +-|...-+-+--.++..|++.+ |..+|....+... -...+|-.+.++|..+|++..|.++|+.... +.++..
T Consensus 642 d-pkN~yAANGIgiVLA~kg~~~~-A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~v 718 (1018)
T KOG2002|consen 642 D-PKNMYAANGIGIVLAEKGRFSE-ARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEV 718 (1018)
T ss_pred C-cchhhhccchhhhhhhccCchH-HHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHH
Confidence 2 2355666666677888899866 8999988887653 3556777899999999999999999987765 357888
Q ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHcCCccchhHHHHHHH
Q 044786 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRI 329 (340)
Q Consensus 289 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~ 329 (340)
.+.|..++.+.|.+.+|.+.+.........-....||..+.
T Consensus 719 l~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v 759 (1018)
T KOG2002|consen 719 LHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALV 759 (1018)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHH
Confidence 89999999999999999998888777765555566665543
No 54
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.19 E-value=4.7e-09 Score=90.88 Aligned_cols=167 Identities=14% Similarity=0.109 Sum_probs=74.3
Q ss_pred hhHHHHHHhhhccchhhHHHHHHHHHhh----cCC-CCCHH-HHHHHHHHHHhcCChhHHHHHHhhcCc-------C-C-
Q 044786 12 MYTCLIKECTFQKDSAGAFELLNHIRKR----VNI-KPTLL-FLNRLLLMHVSCGQLDTARQLFDEMPL-------R-D- 76 (340)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~m~~~----~g~-~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~-------~-~- 76 (340)
++..+...|...|+++.|.+++++..+. .|. .|... ..+.+-..|...+++++|..+|+++.. + +
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3444555566666666666666555443 111 12222 222244455555666655555555441 1 1
Q ss_pred --cccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCcc-ccchHH-HHHHHHHHhhhccchhhHHHHHHHHHHc---CCC
Q 044786 77 --FNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHML-LVFPAW-IIVCVLKACVCTMNMELGKQVHGLLFKL---GSS 149 (340)
Q Consensus 77 --~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~ 149 (340)
..+++.|...|.+.|++++|...++...+.-..... ..|... .++.+...|...+.+++|..+++...+. -+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 113455555556666666555555554433111000 011111 3344444455555555555555433321 011
Q ss_pred C----chhHHHHHHHHHHhhcCHHHHHHHHHHc
Q 044786 150 R----NISLTGSLINFYGKFRCLEDADFVFSQL 178 (340)
Q Consensus 150 ~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 178 (340)
+ -..+++.|...|.+.|++++|+++|++.
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~a 393 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKA 393 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 1 1234445555555555555555555444
No 55
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.19 E-value=3.1e-08 Score=82.19 Aligned_cols=165 Identities=13% Similarity=0.085 Sum_probs=120.5
Q ss_pred HhhcCHHHHHHHHHHcccCChhhHHHH---HHHHhccCchhHHHHHHHHHhhcccCCChhhHHHHHHhcccCCchhchHH
Q 044786 163 GKFRCLEDADFVFSQLKRHNTVVWTAK---IVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGR 239 (340)
Q Consensus 163 ~~~~~~~~a~~~~~~~~~~~~~~~~~l---i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~ 239 (340)
...|++++|.+.|++....|...-.+| ...+-..|+.++|++.|-++..- +.-+....-.+...|....+..+ +.
T Consensus 501 f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aq-ai 578 (840)
T KOG2003|consen 501 FANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQ-AI 578 (840)
T ss_pred eecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHH-HH
Confidence 345889999999999988876554433 33566789999999999887652 12344455556666777776644 33
Q ss_pred HHHHHHHHhC-CCccHHHHHHHHHHHhccCCHHHHHHHHHHhhc--CCcHHHHHHHHHHHHHcCchHHHHHHHHHHHHcC
Q 044786 240 QMHANIVKIG-LESDEYVQCGLVDMYGKCRLLRDAERVFELIVD--KKNIASWNAMLVGYIRNGLYVEATKFLYLMKASG 316 (340)
Q Consensus 240 ~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 316 (340)
.++ |.... ++-|+.+..-|.+.|-+.|+-..|.+.+-+--. +-|+.+..=|..-|....-+++|+..|++.. -
T Consensus 579 e~~--~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaa--l 654 (840)
T KOG2003|consen 579 ELL--MQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--L 654 (840)
T ss_pred HHH--HHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--h
Confidence 333 33333 455889999999999999999999987644332 2366676667777888999999999999863 5
Q ss_pred CccchhHHHHHHHHhhh
Q 044786 317 IQIQESLINDLRIACSS 333 (340)
Q Consensus 317 ~~~~~~t~~~ll~a~~~ 333 (340)
++|+..-|-.++..|.+
T Consensus 655 iqp~~~kwqlmiasc~r 671 (840)
T KOG2003|consen 655 IQPNQSKWQLMIASCFR 671 (840)
T ss_pred cCccHHHHHHHHHHHHH
Confidence 69999999999998865
No 56
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.15 E-value=6.6e-09 Score=82.47 Aligned_cols=225 Identities=12% Similarity=0.005 Sum_probs=180.8
Q ss_pred HHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHH
Q 044786 81 AVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLIN 160 (340)
Q Consensus 81 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 160 (340)
+-+.++|.+.|.+.+|.+.++..++. .|-..||..|-+.|.+..++..|+.++.+-++.- +-++....-+..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q-------~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~AR 298 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ-------FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQAR 298 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc-------CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHH
Confidence 34788999999999999999999988 7888999999999999999999999999887763 224434455777
Q ss_pred HHHhhcCHHHHHHHHHHcccC---ChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCChhhHHHHHHhcccCCchhch
Q 044786 161 FYGKFRCLEDADFVFSQLKRH---NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC 237 (340)
Q Consensus 161 ~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~ 237 (340)
.+-..++.++|.++|+...+. ++.....+...|.-.++++-|+.+|+++.+-|+. +...|+.+--.|.-.+.++-
T Consensus 299 i~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~- 376 (478)
T KOG1129|consen 299 IHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDL- 376 (478)
T ss_pred HHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhh-
Confidence 888899999999999998654 5556666777888899999999999999999864 56678777777777777744
Q ss_pred HHHHHHHHHHhCCCc--cHHHHHHHHHHHhccCCHHHHHHHHHHhhcC--CcHHHHHHHHHHHHHcCchHHHHHHHHHHH
Q 044786 238 GRQMHANIVKIGLES--DEYVQCGLVDMYGKCRLLRDAERVFELIVDK--KNIASWNAMLVGYIRNGLYVEATKFLYLMK 313 (340)
Q Consensus 238 ~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 313 (340)
+..-++.....--.| -..+|-.|-......|++..|.+-|+-.... .+...+|.|..--.+.|++++|..+++...
T Consensus 377 ~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 377 VLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred hHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 554455444433334 3457778888888899999999999988753 356789999888899999999999999876
Q ss_pred Hc
Q 044786 314 AS 315 (340)
Q Consensus 314 ~~ 315 (340)
..
T Consensus 457 s~ 458 (478)
T KOG1129|consen 457 SV 458 (478)
T ss_pred hh
Confidence 55
No 57
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=5.3e-07 Score=74.13 Aligned_cols=303 Identities=8% Similarity=-0.043 Sum_probs=216.9
Q ss_pred CCCCCCCcchhHHHHHHhhh--ccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCcCCcccH
Q 044786 3 NLCLPITTDMYTCLIKECTF--QKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSW 80 (340)
Q Consensus 3 ~~g~~~~~~~~~~li~~~~~--~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 80 (340)
.-.++|...+...-+.++++ .++...|.+++-.+....-++-|......+...+...|+.++|...|+....-|+.+.
T Consensus 187 ~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i 266 (564)
T KOG1174|consen 187 AATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNV 266 (564)
T ss_pred heecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhh
Confidence 34556666666666666654 3444555555544444424677888889999999999999999999998875544432
Q ss_pred H---HHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHH
Q 044786 81 A---VMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGS 157 (340)
Q Consensus 81 ~---~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 157 (340)
. ...-.+.+.|+.+....+...+.... ..+...|..-+.......+++.|+.+-+...+.... +...|-.
T Consensus 267 ~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~------~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alil 339 (564)
T KOG1174|consen 267 EAMDLYAVLLGQEGGCEQDSALMDYLFAKV------KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALIL 339 (564)
T ss_pred hhHHHHHHHHHhccCHhhHHHHHHHHHhhh------hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHh
Confidence 2 22233457788888888888887663 455566666666677788999999988887776533 4455555
Q ss_pred HHHHHHhhcCHHHHHHHHHHcc--cC-ChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCChhhHHHHH-HhcccCCc
Q 044786 158 LINFYGKFRCLEDADFVFSQLK--RH-NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL-KACGGVDD 233 (340)
Q Consensus 158 l~~~~~~~~~~~~a~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll-~~~~~~~~ 233 (340)
-...+...++.++|.-.|+... .| +..+|.-++.+|...|++.+|..+-+...+. +.-+..+...+- ..|.....
T Consensus 340 KG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~ 418 (564)
T KOG1174|consen 340 KGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPR 418 (564)
T ss_pred ccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCch
Confidence 5677888999999999999864 43 7889999999999999999998877665543 223344443331 23333333
Q ss_pred hhchHHHHHHHHHHhCCCc-cHHHHHHHHHHHhccCCHHHHHHHHHHhhc-CCcHHHHHHHHHHHHHcCchHHHHHHHHH
Q 044786 234 DGNCGRQMHANIVKIGLES-DEYVQCGLVDMYGKCRLLRDAERVFELIVD-KKNIASWNAMLVGYIRNGLYVEATKFLYL 311 (340)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 311 (340)
..+-++.+++.-.+ +.| -....+.+.+.+...|+...+..+++.... .||....+.|.+.+.....+.+|++.|..
T Consensus 419 ~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ 496 (564)
T KOG1174|consen 419 MREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYK 496 (564)
T ss_pred hHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 33447777766544 344 345667788889999999999999988765 58999999999999999999999999887
Q ss_pred HHHc
Q 044786 312 MKAS 315 (340)
Q Consensus 312 m~~~ 315 (340)
....
T Consensus 497 ALr~ 500 (564)
T KOG1174|consen 497 ALRQ 500 (564)
T ss_pred HHhc
Confidence 6544
No 58
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.13 E-value=5.5e-07 Score=75.33 Aligned_cols=99 Identities=12% Similarity=0.149 Sum_probs=63.3
Q ss_pred CChhhHHHHHHhcccCCchhchHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhcCCc----HHHHHH
Q 044786 216 KNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN----IASWNA 291 (340)
Q Consensus 216 p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~ 291 (340)
|-..+|..-|..=.+.+.+++ +..+++.....+ +.+..+|......-...|+.+.|..+|+-..++|. ...|.+
T Consensus 435 PK~KlFk~YIelElqL~efDR-cRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwka 512 (677)
T KOG1915|consen 435 PKDKLFKGYIELELQLREFDR-CRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKA 512 (677)
T ss_pred CchhHHHHHHHHHHHHhhHHH-HHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHH
Confidence 333344433433344555544 556666555543 33666676666666677888888888887777663 345666
Q ss_pred HHHHHHHcCchHHHHHHHHHHHHcC
Q 044786 292 MLVGYIRNGLYVEATKFLYLMKASG 316 (340)
Q Consensus 292 li~~~~~~~~~~~a~~~~~~m~~~g 316 (340)
.|.-=...|.+++|..+|+++.+..
T Consensus 513 YIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 513 YIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred hhhhhhhcchHHHHHHHHHHHHHhc
Confidence 6666668888899999998887663
No 59
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.12 E-value=8.8e-07 Score=76.99 Aligned_cols=310 Identities=8% Similarity=-0.017 Sum_probs=216.1
Q ss_pred chhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCc---CCcccHHHHHHHH
Q 044786 11 DMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL---RDFNSWAVMIVGY 87 (340)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~ 87 (340)
.+|+.-.+.|.+.+.++-|..+|....+. ++-+...|......--..|..++...+|++... +....|-.....+
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqv--fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~ 594 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQV--FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEK 594 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHH
Confidence 35566666677777777777777777765 555667777777666677888888888887763 3444566677778
Q ss_pred HcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcC
Q 044786 88 VDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167 (340)
Q Consensus 88 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 167 (340)
...|+...|..++.+..+.. +.+...|-..++.-.....++.|..+|...... .|+..+|..-+..-.-.++
T Consensus 595 w~agdv~~ar~il~~af~~~------pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~ 666 (913)
T KOG0495|consen 595 WKAGDVPAARVILDQAFEAN------PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDN 666 (913)
T ss_pred HhcCCcHHHHHHHHHHHHhC------CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhh
Confidence 88899999999999888873 446668888888888888999999998877764 5677777777777777888
Q ss_pred HHHHHHHHHHcccC--C-hhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCCh-hhHHHHHHhcccCCchhchHHHHHH
Q 044786 168 LEDADFVFSQLKRH--N-TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS-YTFSSVLKACGGVDDDGNCGRQMHA 243 (340)
Q Consensus 168 ~~~a~~~~~~~~~~--~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~~~~~~~~~~~~~ 243 (340)
.++|.+++++..+. + .-.|-.+.+.+-+.++.+.|.+.|..=.+. .|+. ..|..+...=.+.|.+.+ |..+++
T Consensus 667 ~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~--cP~~ipLWllLakleEk~~~~~r-AR~ild 743 (913)
T KOG0495|consen 667 VEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK--CPNSIPLWLLLAKLEEKDGQLVR-ARSILD 743 (913)
T ss_pred HHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc--CCCCchHHHHHHHHHHHhcchhh-HHHHHH
Confidence 99999988877654 2 224556666677777777777776554432 3443 344444444456666656 777777
Q ss_pred HHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhc--------------------------------CCcHHHHHH
Q 044786 244 NIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD--------------------------------KKNIASWNA 291 (340)
Q Consensus 244 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--------------------------------~~~~~~~~~ 291 (340)
.....+ +-+...|-..|++-.+.|+.+.|..+..+..+ ..|+...-.
T Consensus 744 rarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVlla 822 (913)
T KOG0495|consen 744 RARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLA 822 (913)
T ss_pred HHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHH
Confidence 666544 44778888888888888888888877665542 124555555
Q ss_pred HHHHHHHcCchHHHHHHHHHHHHcCCccchhHHHHHHHHhhhcC
Q 044786 292 MLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335 (340)
Q Consensus 292 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~a~~~~g 335 (340)
+...|-...++++|.+.|.+-...+ .-+..+|.-+..-....|
T Consensus 823 ia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG 865 (913)
T KOG0495|consen 823 IAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHG 865 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhC
Confidence 6666777788888999888876553 223356666666666666
No 60
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.11 E-value=1.5e-07 Score=78.76 Aligned_cols=214 Identities=10% Similarity=0.011 Sum_probs=153.2
Q ss_pred cChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHH
Q 044786 91 ADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170 (340)
Q Consensus 91 g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 170 (340)
|+...|..-|+..+... +-+...|.-+...|....+.++..+.|+...+.+.. ++.+|.-=...+.-.+++++
T Consensus 340 g~~~~a~~d~~~~I~l~------~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 340 GDSLGAQEDFDAAIKLD------PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEE 412 (606)
T ss_pred CCchhhhhhHHHHHhcC------cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHH
Confidence 44445555555555442 223333777777888888888888888888887755 66677766777777888999
Q ss_pred HHHHHHHcccC---ChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCChhhHHHHHHhcccCCchhchHHHHHHHHHH
Q 044786 171 ADFVFSQLKRH---NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVK 247 (340)
Q Consensus 171 a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~ 247 (340)
|..=|++...- ++..|-.+--+..+.+++++++..|++..++ ++-....|+-....+...++++. +...++..+.
T Consensus 413 A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~-A~k~YD~ai~ 490 (606)
T KOG0547|consen 413 AIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDK-AVKQYDKAIE 490 (606)
T ss_pred HHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHH-HHHHHHHHHh
Confidence 99988887644 4455655555666788999999999999876 44457889999999999999988 6666665554
Q ss_pred hCCC-------ccHHHHHHHHHHHhccCCHHHHHHHHHHhhc--CCcHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Q 044786 248 IGLE-------SDEYVQCGLVDMYGKCRLLRDAERVFELIVD--KKNIASWNAMLVGYIRNGLYVEATKFLYLMKA 314 (340)
Q Consensus 248 ~~~~-------~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 314 (340)
..-. +.+.+--.++-.-. .+++..|..+++...+ +.....|..|...-.++|+.++|+++|++-..
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3211 22222223333223 3899999999998876 34677899999999999999999999998643
No 61
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.09 E-value=8.7e-07 Score=77.90 Aligned_cols=280 Identities=13% Similarity=0.117 Sum_probs=195.1
Q ss_pred HHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCcCCcc--c-HHHHHHHHHcc---
Q 044786 17 IKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFN--S-WAVMIVGYVDV--- 90 (340)
Q Consensus 17 i~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~-~~~li~~~~~~--- 90 (340)
...+...|++++|++.++.-... +.............+.+.|+.++|..++..+..+|+. . |..+..+..-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccc
Confidence 44567889999999999887655 5555667778889999999999999999999965554 3 44455555222
Q ss_pred --cChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccch-hhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcC
Q 044786 91 --ADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNM-ELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167 (340)
Q Consensus 91 --g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 167 (340)
.+.+...++|+++... .|.......+.-.+.....+ ..+..++..+.+.|++ .+++.|-..|....+
T Consensus 89 ~~~~~~~~~~~y~~l~~~-------yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K 158 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEK-------YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEK 158 (517)
T ss_pred ccccHHHHHHHHHHHHHh-------CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhH
Confidence 2567788899988777 45444444443333332233 3455566777778854 366777777776655
Q ss_pred HHHHHHHHHHccc------------------CChh--hHHHHHHHHhccCchhHHHHHHHHHhhcccCCC-hhhHHHHHH
Q 044786 168 LEDADFVFSQLKR------------------HNTV--VWTAKIVNNCREGHFHQVFNDFKEMGRERIKKN-SYTFSSVLK 226 (340)
Q Consensus 168 ~~~a~~~~~~~~~------------------~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~t~~~ll~ 226 (340)
..-..+++..... |... ++.-+-..|...|++++|++++++..++ .|+ ...|..-..
T Consensus 159 ~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~Kar 236 (517)
T PF12569_consen 159 AAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKAR 236 (517)
T ss_pred HHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHH
Confidence 5555555555321 1222 3455667788899999999999999886 566 556778888
Q ss_pred hcccCCchhchHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhcCC-----cHH----HH--HHHHHH
Q 044786 227 ACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK-----NIA----SW--NAMLVG 295 (340)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~-----~~~----~~--~~li~~ 295 (340)
.+-+.|++.+ |....+...... .-|..+-+-.+..+.++|++++|.+++....... |.. .| .-...+
T Consensus 237 ilKh~G~~~~-Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a 314 (517)
T PF12569_consen 237 ILKHAGDLKE-AAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEA 314 (517)
T ss_pred HHHHCCCHHH-HHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHH
Confidence 8999999977 666666655543 2377777888889999999999999999887532 111 22 334568
Q ss_pred HHHcCchHHHHHHHHHH
Q 044786 296 YIRNGLYVEATKFLYLM 312 (340)
Q Consensus 296 ~~~~~~~~~a~~~~~~m 312 (340)
|.+.|++..|++-|...
T Consensus 315 ~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 315 YLRQGDYGLALKRFHAV 331 (517)
T ss_pred HHHHhhHHHHHHHHHHH
Confidence 99999999988766554
No 62
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.08 E-value=4.8e-07 Score=81.81 Aligned_cols=236 Identities=11% Similarity=0.003 Sum_probs=161.0
Q ss_pred CCcccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhH
Q 044786 75 RDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISL 154 (340)
Q Consensus 75 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 154 (340)
.|++..+.|.+-|.-.|++..+..+...+......- ..-+..|..+.+++-..|++++|.++|.+..+.........
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~---~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~ 344 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENK---SIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLP 344 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhh---HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcccc
Confidence 366677888888888889998888888877662000 23445688899999999999999999888777654433445
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHcccC---ChhhHHHHHHHHhccC----chhHHHHHHHHHhhcccCCChhhHHHHHHh
Q 044786 155 TGSLINFYGKFRCLEDADFVFSQLKRH---NTVVWTAKIVNNCREG----HFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227 (340)
Q Consensus 155 ~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~----~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~ 227 (340)
+--+...|.+.|+++.+...|+.+.+. +..+..++...|...+ ..+.|..++.+..+.- +.|...|..+-..
T Consensus 345 ~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql 423 (1018)
T KOG2002|consen 345 LVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQL 423 (1018)
T ss_pred ccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHH
Confidence 567888999999999999999887643 4556666666666654 4566666666665532 3345566665555
Q ss_pred cccCCchh--chHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhcC------CcHH-------HHHHH
Q 044786 228 CGGVDDDG--NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK------KNIA-------SWNAM 292 (340)
Q Consensus 228 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~------~~~~-------~~~~l 292 (340)
+....-+. .+.......+...+..+.+...|.+...+...|++..|...|...... ++.. -|| +
T Consensus 424 ~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN-l 502 (1018)
T KOG2002|consen 424 LEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN-L 502 (1018)
T ss_pred HHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHH-H
Confidence 54433321 112222334556666788888899999999999999999999887653 2221 232 3
Q ss_pred HHHHHHcCchHHHHHHHHHHHHc
Q 044786 293 LVGYIRNGLYVEATKFLYLMKAS 315 (340)
Q Consensus 293 i~~~~~~~~~~~a~~~~~~m~~~ 315 (340)
...+-..++++.|.+.|......
T Consensus 503 arl~E~l~~~~~A~e~Yk~Ilke 525 (1018)
T KOG2002|consen 503 ARLLEELHDTEVAEEMYKSILKE 525 (1018)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHH
Confidence 34444567888888888888765
No 63
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.07 E-value=2.1e-08 Score=79.73 Aligned_cols=225 Identities=8% Similarity=0.023 Sum_probs=184.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHhhcC--cCCcccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHH
Q 044786 49 LNRLLLMHVSCGQLDTARQLFDEMP--LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKA 126 (340)
Q Consensus 49 ~~~li~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~ 126 (340)
-+.+..+|.+.|-+.+|...|+.-. .|-+.||-.|-++|.+..++..|+.+|.+-++. ++.++.....+.+.
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~------fP~~VT~l~g~ARi 299 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS------FPFDVTYLLGQARI 299 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc------CCchhhhhhhhHHH
Confidence 3677889999999999999998766 467789999999999999999999999987766 35555566677888
Q ss_pred hhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHcccC---ChhhHHHHHHHHhccCchhHHH
Q 044786 127 CVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH---NTVVWTAKIVNNCREGHFHQVF 203 (340)
Q Consensus 127 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~ 203 (340)
+...++.+++.++|+...+.... ++....++...|.-.++.+-|...|+++.+- +...|+.+..+|.-.++++-++
T Consensus 300 ~eam~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 300 HEAMEQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HHHHHhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhH
Confidence 89999999999999999887633 6666777788888999999999999998754 6778999999999999999999
Q ss_pred HHHHHHhhcccCCCh--hhHHHHHHhcccCCchhchHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhh
Q 044786 204 NDFKEMGRERIKKNS--YTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIV 281 (340)
Q Consensus 204 ~~~~~m~~~~~~p~~--~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 281 (340)
.-|.+....--.|+. ..|-.+-......|++. .+...++.....+ .-+...+|.|.-.-.+.|+++.|..+++..+
T Consensus 379 ~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~n-lA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 379 PSFQRALSTATQPGQAADVWYNLGFVAVTIGDFN-LAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHHHHHHhhccCcchhhhhhhccceeEEeccchH-HHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 999988765444543 23555666677889984 4888888877654 3466788888888899999999999999887
Q ss_pred c
Q 044786 282 D 282 (340)
Q Consensus 282 ~ 282 (340)
+
T Consensus 457 s 457 (478)
T KOG1129|consen 457 S 457 (478)
T ss_pred h
Confidence 6
No 64
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.05 E-value=2.2e-06 Score=74.65 Aligned_cols=289 Identities=15% Similarity=0.096 Sum_probs=210.9
Q ss_pred cchhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcC--cCCcccHHHHHHHH
Q 044786 10 TDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMP--LRDFNSWAVMIVGY 87 (340)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~li~~~ 87 (340)
...|-.........|+...|..++...... .+.+...|-.-+..-.....++.|..+|.+.. .++..+|.--++..
T Consensus 584 e~lwlM~ake~w~agdv~~ar~il~~af~~--~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~e 661 (913)
T KOG0495|consen 584 EILWLMYAKEKWKAGDVPAARVILDQAFEA--NPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLE 661 (913)
T ss_pred hhHHHHHHHHHHhcCCcHHHHHHHHHHHHh--CCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHH
Confidence 334445555666778888888888888766 34466778888888888888888888888766 44555677666666
Q ss_pred HcccChhHHHHHHHHHHHhhcCCccccchH-HHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhc
Q 044786 88 VDVADYQECITLFAEMMKRKKGHMLLVFPA-WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166 (340)
Q Consensus 88 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 166 (340)
--.++.++|++++++.++. -|+- ..|-.+...+-+.++++.|...|..=.+.- +..+..|-.|...=-+.|
T Consensus 662 r~ld~~eeA~rllEe~lk~-------fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c-P~~ipLWllLakleEk~~ 733 (913)
T KOG0495|consen 662 RYLDNVEEALRLLEEALKS-------FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKC-PNSIPLWLLLAKLEEKDG 733 (913)
T ss_pred HHhhhHHHHHHHHHHHHHh-------CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccC-CCCchHHHHHHHHHHHhc
Confidence 6778888888888888777 3443 366666677777788888877775444332 234557777777777888
Q ss_pred CHHHHHHHHHHcc--cC-ChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCChhhHHHHHHhcccCCchhchHHHHHH
Q 044786 167 CLEDADFVFSQLK--RH-NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHA 243 (340)
Q Consensus 167 ~~~~a~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~ 243 (340)
.+..|..+++... .| +...|-..|+.-.+.|+.+.|..++.+..+. ++.+...|..-|....+.++-.. ..+
T Consensus 734 ~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTk----s~D 808 (913)
T KOG0495|consen 734 QLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTK----SID 808 (913)
T ss_pred chhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchH----HHH
Confidence 8999999998865 33 6778999999999999999999998887765 33445566666666666555211 223
Q ss_pred HHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhcC-C-cHHHHHHHHHHHHHcCchHHHHHHHHHHHHc
Q 044786 244 NIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK-K-NIASWNAMLVGYIRNGLYVEATKFLYLMKAS 315 (340)
Q Consensus 244 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 315 (340)
.+.+ +.-|+.+.-.+...+....+++.|.+.|.+.... | +-.+|.-+...+.++|.-+.-.+++......
T Consensus 809 ALkk--ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~ 880 (913)
T KOG0495|consen 809 ALKK--CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA 880 (913)
T ss_pred HHHh--ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 3333 4557777778888899999999999999998762 3 5578888999999999888888888877543
No 65
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.04 E-value=2.6e-06 Score=72.82 Aligned_cols=295 Identities=7% Similarity=-0.029 Sum_probs=180.8
Q ss_pred chhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHH-HHHHHHHHhcCChhHHHHHHhhcCcC---CcccHHHHHHH
Q 044786 11 DMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFL-NRLLLMHVSCGQLDTARQLFDEMPLR---DFNSWAVMIVG 86 (340)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~-~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~ 86 (340)
..|..+...+...|+.+.+.+.+....+.....++.... ......+...|++++|.+.+++..+. +...+.. ...
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~ 85 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLG 85 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHH
Confidence 345556666667788888777777766551223333222 22234556789999999999987633 3223332 223
Q ss_pred HHc----ccChhHHHHHHHHHHHhhcCCccccch-HHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHH
Q 044786 87 YVD----VADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINF 161 (340)
Q Consensus 87 ~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 161 (340)
+.. .+..+.+.+.+.... +. .|+ ......+...+...|++++|.+.++...+.... +...+..+...
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~----~~---~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i 157 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPLWA----PE---NPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHV 157 (355)
T ss_pred HHHhcccccCchhHHHHHhccC----cC---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHH
Confidence 333 344444555444311 11 333 345556677888999999999999999988644 56778888999
Q ss_pred HHhhcCHHHHHHHHHHcccC-----Ch--hhHHHHHHHHhccCchhHHHHHHHHHhhccc-CCChhhH-H--HHHHhccc
Q 044786 162 YGKFRCLEDADFVFSQLKRH-----NT--VVWTAKIVNNCREGHFHQVFNDFKEMGRERI-KKNSYTF-S--SVLKACGG 230 (340)
Q Consensus 162 ~~~~~~~~~a~~~~~~~~~~-----~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~t~-~--~ll~~~~~ 230 (340)
|...|++++|...+++..+. +. ..|..+...+...|++++|..++++...... .+..... + .++.-+..
T Consensus 158 ~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 237 (355)
T cd05804 158 LEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLEL 237 (355)
T ss_pred HHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHh
Confidence 99999999999999987642 22 2355678889999999999999999864322 1112111 1 22333333
Q ss_pred CCchhchHHHH---HHHHHHhCC-CccHHHHHHHHHHHhccCCHHHHHHHHHHhhcC--C---c------HHHHHHHHHH
Q 044786 231 VDDDGNCGRQM---HANIVKIGL-ESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK--K---N------IASWNAMLVG 295 (340)
Q Consensus 231 ~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~--~---~------~~~~~~li~~ 295 (340)
.|.... +..+ ......... ............++...|+.+.|..+++.+... . . +...-....+
T Consensus 238 ~g~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~ 316 (355)
T cd05804 238 AGHVDV-GDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALY 316 (355)
T ss_pred cCCCCh-HHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHH
Confidence 343211 2222 222111100 111222235677778899999999999988652 1 1 1112222234
Q ss_pred HHHcCchHHHHHHHHHHHHc
Q 044786 296 YIRNGLYVEATKFLYLMKAS 315 (340)
Q Consensus 296 ~~~~~~~~~a~~~~~~m~~~ 315 (340)
+...|++++|.+.+.+....
T Consensus 317 ~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 317 AFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 56899999999999887655
No 66
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=5.6e-07 Score=76.75 Aligned_cols=280 Identities=9% Similarity=-0.033 Sum_probs=202.1
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHhhcCcCC---cccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHH
Q 044786 43 KPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRD---FNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI 119 (340)
Q Consensus 43 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ 119 (340)
+-++.....-.+-+...+++.+..++++.+.+.| ...+-.-|.++...|+..+-..+=.++.... +-...+
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y------P~~a~s 314 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY------PSKALS 314 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC------CCCCcc
Confidence 3344444555556667788888888888877543 3456666778888888888777777777773 556678
Q ss_pred HHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHccc---CChhhHHHHHHHHhcc
Q 044786 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR---HNTVVWTAKIVNNCRE 196 (340)
Q Consensus 120 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~ 196 (340)
|.++.--|.-.|...+|.+.|......+.. -...|-.+...|.-.|..++|...|....+ ...-.+--+.--|.+.
T Consensus 315 W~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t 393 (611)
T KOG1173|consen 315 WFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRT 393 (611)
T ss_pred hhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHh
Confidence 888888888889999999998877665533 234677778888888888888877765432 1222222234457778
Q ss_pred CchhHHHHHHHHHhhcccCCC-hhhHHHHHHhcccCCchhchHHHHHHHHHHh----CC-C-ccHHHHHHHHHHHhccCC
Q 044786 197 GHFHQVFNDFKEMGRERIKKN-SYTFSSVLKACGGVDDDGNCGRQMHANIVKI----GL-E-SDEYVQCGLVDMYGKCRL 269 (340)
Q Consensus 197 ~~~~~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~----~~-~-~~~~~~~~li~~~~~~~~ 269 (340)
++.+-|..+|.+... +.|+ +...+-+-...-..+.+.+ |..+++..... +- + -...+++.|-++|-++++
T Consensus 394 ~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~-A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~ 470 (611)
T KOG1173|consen 394 NNLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPE-ALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNK 470 (611)
T ss_pred ccHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHH-HHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhh
Confidence 899999999988775 4564 5555555555555677766 66665544411 11 1 245678899999999999
Q ss_pred HHHHHHHHHHhhc--CCcHHHHHHHHHHHHHcCchHHHHHHHHHHHHcCCccchhHHHHHHHHhhhc
Q 044786 270 LRDAERVFELIVD--KKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334 (340)
Q Consensus 270 ~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~a~~~~ 334 (340)
+++|...++.... +.+..++.++.-.|...|+++.|.+.|.+-. .+.|+..+...+|.-+...
T Consensus 471 ~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 471 YEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHHHHh
Confidence 9999999998876 4588899999999999999999999999874 6789998888888866543
No 67
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.04 E-value=1.2e-07 Score=78.35 Aligned_cols=216 Identities=9% Similarity=0.015 Sum_probs=117.3
Q ss_pred ccchhhHHHHHHHHHhhcCCCCC--HHHHHHHHHHHHhcCChhHHHHHHhhcCc---CCcccHHHHHHHHHcccChhHHH
Q 044786 23 QKDSAGAFELLNHIRKRVNIKPT--LLFLNRLLLMHVSCGQLDTARQLFDEMPL---RDFNSWAVMIVGYVDVADYQECI 97 (340)
Q Consensus 23 ~~~~~~a~~~~~~m~~~~g~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~ 97 (340)
.+..+.++.-+.++.....+.|+ ...|..+...+.+.|+.++|...|++..+ .+...|+.+...+...|++++|.
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 34556666666666643122222 24455666666777777777777766652 23446777777777777777777
Q ss_pred HHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHH
Q 044786 98 TLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQ 177 (340)
Q Consensus 98 ~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 177 (340)
..|++..+.. +-+..++..+..++...|++++|.+.++...+.... ..........+...++.++|...|++
T Consensus 119 ~~~~~Al~l~------P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~--~~~~~~~~~l~~~~~~~~~A~~~l~~ 190 (296)
T PRK11189 119 EAFDSVLELD------PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN--DPYRALWLYLAESKLDPKQAKENLKQ 190 (296)
T ss_pred HHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 7777777662 233456666666677777777777777776665432 11111112223345567777777754
Q ss_pred cccC-ChhhHHHHHHHHhccCchhHHHHHHHHHhh---cc--cCC-ChhhHHHHHHhcccCCchhchHHHHHHHHHHhC
Q 044786 178 LKRH-NTVVWTAKIVNNCREGHFHQVFNDFKEMGR---ER--IKK-NSYTFSSVLKACGGVDDDGNCGRQMHANIVKIG 249 (340)
Q Consensus 178 ~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~--~~p-~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 249 (340)
.... +...|.. .......|+..++ ..+..+.+ .. +.| ....|..+-..+.+.|+.++ |...++.....+
T Consensus 191 ~~~~~~~~~~~~-~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~-A~~~~~~Al~~~ 266 (296)
T PRK11189 191 RYEKLDKEQWGW-NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDE-AAALFKLALANN 266 (296)
T ss_pred HHhhCCccccHH-HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHH-HHHHHHHHHHhC
Confidence 3322 2222221 1222234444433 23333331 11 112 23456666667777777755 666666666544
No 68
>PF12854 PPR_1: PPR repeat
Probab=99.02 E-value=5.5e-10 Score=58.85 Aligned_cols=33 Identities=33% Similarity=0.498 Sum_probs=26.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcC
Q 044786 41 NIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMP 73 (340)
Q Consensus 41 g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 73 (340)
|+.||..+||+||++||+.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 778888888888888888888888888888774
No 69
>PF12854 PPR_1: PPR repeat
Probab=99.02 E-value=4.5e-10 Score=59.19 Aligned_cols=32 Identities=28% Similarity=0.367 Sum_probs=25.1
Q ss_pred CCCccHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 044786 249 GLESDEYVQCGLVDMYGKCRLLRDAERVFELI 280 (340)
Q Consensus 249 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~ 280 (340)
|+.||..||++||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 67777788888888888888888887777776
No 70
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.01 E-value=8.8e-07 Score=73.32 Aligned_cols=92 Identities=8% Similarity=-0.036 Sum_probs=51.8
Q ss_pred HHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHccc--C-ChhhHHHHHHHHhc
Q 044786 119 IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR--H-NTVVWTAKIVNNCR 195 (340)
Q Consensus 119 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~ 195 (340)
.|..+...+...|+.++|...|+...+.... +...|+.+...+...|++++|...|+...+ | +..+|..+..++..
T Consensus 66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~ 144 (296)
T PRK11189 66 LHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYY 144 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 4555555555566666666666555555432 445555666666666666666666665532 2 33445555555556
Q ss_pred cCchhHHHHHHHHHhh
Q 044786 196 EGHFHQVFNDFKEMGR 211 (340)
Q Consensus 196 ~~~~~~a~~~~~~m~~ 211 (340)
.|++++|++.|++..+
T Consensus 145 ~g~~~eA~~~~~~al~ 160 (296)
T PRK11189 145 GGRYELAQDDLLAFYQ 160 (296)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 6666666666666554
No 71
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.01 E-value=3.3e-07 Score=69.55 Aligned_cols=199 Identities=10% Similarity=-0.007 Sum_probs=140.6
Q ss_pred HHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHH
Q 044786 80 WAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLI 159 (340)
Q Consensus 80 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 159 (340)
.--|.-+|...|++..|.+-+++.++.+ +.+..++..+...|-+.|..+.|.+-|+...+.... +..+.|...
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D------Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG 110 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD------PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYG 110 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC------cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhh
Confidence 4446667888888888888888888874 445557777778888888888888888888777644 566777777
Q ss_pred HHHHhhcCHHHHHHHHHHccc-C----ChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCC-hhhHHHHHHhcccCCc
Q 044786 160 NFYGKFRCLEDADFVFSQLKR-H----NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKN-SYTFSSVLKACGGVDD 233 (340)
Q Consensus 160 ~~~~~~~~~~~a~~~~~~~~~-~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~ 233 (340)
-.+|..|++++|...|++... | -..+|..+.-+..+.|+++.|.+.|++-.+.. |+ ..+...+.....+.|+
T Consensus 111 ~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d--p~~~~~~l~~a~~~~~~~~ 188 (250)
T COG3063 111 AFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD--PQFPPALLELARLHYKAGD 188 (250)
T ss_pred HHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC--cCCChHHHHHHHHHHhccc
Confidence 778888888888888887653 3 24467777777778888888888888877642 32 3455666677777777
Q ss_pred hhchHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhc-CCcHHHH
Q 044786 234 DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD-KKNIASW 289 (340)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-~~~~~~~ 289 (340)
+.+ +..+++.....+. ++..+....|+.--..|+-+.+.+.=..+.. -|...-|
T Consensus 189 y~~-Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 189 YAP-ARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred chH-HHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 766 6666666655543 7777777777777777777777766555543 2444433
No 72
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.95 E-value=8.8e-07 Score=67.27 Aligned_cols=190 Identities=11% Similarity=-0.063 Sum_probs=100.9
Q ss_pred HHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcC---cCCcccHHHHHHHHHcc
Q 044786 14 TCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMP---LRDFNSWAVMIVGYVDV 90 (340)
Q Consensus 14 ~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~ 90 (340)
..+.-.|.+.|+...|.+-++...+. -+-+..+|..+-..|.+.|..+.|.+.|+... ..+-.+.|.....+|..
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhC
Confidence 34444555666666666666666654 12234455555566666666666666666544 23444556666666666
Q ss_pred cChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHH
Q 044786 91 ADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170 (340)
Q Consensus 91 g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 170 (340)
|++++|.+.|++..... . ..-...+|..+.-+..+.|+.+.|...|++..+.... ...+...+.....+.|++..
T Consensus 117 g~~~eA~q~F~~Al~~P--~--Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 117 GRPEEAMQQFERALADP--A--YGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAP 191 (250)
T ss_pred CChHHHHHHHHHHHhCC--C--CCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchH
Confidence 66666666666665542 1 1223445555555556666666666666666555433 23344455555555566655
Q ss_pred HHHHHHHcccC---ChhhHHHHHHHHhccCchhHHHHHHHHHh
Q 044786 171 ADFVFSQLKRH---NTVVWTAKIVNNCREGHFHQVFNDFKEMG 210 (340)
Q Consensus 171 a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 210 (340)
|...++..... +..+.-..|+.--..|+.+.+-+.=..+.
T Consensus 192 Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 192 ARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 55555554433 22233333444444555554444444443
No 73
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=2.9e-06 Score=72.55 Aligned_cols=279 Identities=12% Similarity=0.018 Sum_probs=206.4
Q ss_pred CCCCcchhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCc---CCcccHHH
Q 044786 6 LPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL---RDFNSWAV 82 (340)
Q Consensus 6 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~ 82 (340)
+.-+++....-.+-|...+++.+..++.+..... .++....+-.=|..+...|+..+-..+=.++.+ ....+|-+
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~--dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~a 317 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEK--DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFA 317 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh--CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhh
Confidence 3445555556666777889999999999999987 455566666666688888887766666566653 35668999
Q ss_pred HHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCC-CchhHHHHHHHH
Q 044786 83 MIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSS-RNISLTGSLINF 161 (340)
Q Consensus 83 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~ 161 (340)
+.--|.-.|+..+|.+.|.+....+ +.-...|-....+++-.|..++|...|...-+.=.. .-+..| +.--
T Consensus 318 Vg~YYl~i~k~seARry~SKat~lD------~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LY--lgme 389 (611)
T KOG1173|consen 318 VGCYYLMIGKYSEARRYFSKATTLD------PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLY--LGME 389 (611)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcC------ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHH--HHHH
Confidence 9888888899999999999987764 344557888999999999999999988776554211 122233 4455
Q ss_pred HHhhcCHHHHHHHHHHccc---CChhhHHHHHHHHhccCchhHHHHHHHHHhhc--cc---C-CChhhHHHHHHhcccCC
Q 044786 162 YGKFRCLEDADFVFSQLKR---HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRE--RI---K-KNSYTFSSVLKACGGVD 232 (340)
Q Consensus 162 ~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~---~-p~~~t~~~ll~~~~~~~ 232 (340)
|.+.+++..|.+.|.+... .|+...+-+.-.....+.+.+|..+|+..... .+ . ....+++.+-.+|.+.+
T Consensus 390 y~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~ 469 (611)
T KOG1173|consen 390 YMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLN 469 (611)
T ss_pred HHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHh
Confidence 8888999999999998753 37777888777777788999999999887631 11 1 23456888889999999
Q ss_pred chhchHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhc-CCcHHHHHHHHHHH
Q 044786 233 DDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD-KKNIASWNAMLVGY 296 (340)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~li~~~ 296 (340)
.+.+ +...++..... .+-+..++.++.-.|...|+++.|.+.|.+... +|+-.+-..++..+
T Consensus 470 ~~~e-AI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 470 KYEE-AIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLA 532 (611)
T ss_pred hHHH-HHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 9977 66666655543 245888888999999999999999999988765 57665555555543
No 74
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.83 E-value=6.4e-07 Score=73.26 Aligned_cols=149 Identities=12% Similarity=0.073 Sum_probs=73.8
Q ss_pred HHHHhhcCHHHHHHHHHHcccCChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCChhhHHHHHHhccc----CCchh
Q 044786 160 NFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG----VDDDG 235 (340)
Q Consensus 160 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~----~~~~~ 235 (340)
..+...|++++|.++++.- .+.......+..|.+.++++.|.+.++.|.+. ..| .+...+..++.. .+.+.
T Consensus 110 ~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~e~~~ 184 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGGEKYQ 184 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCchhHH
Confidence 3444455555555555443 23344444555666666666666666666542 122 222333333211 12332
Q ss_pred chHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhcC--CcHHHHHHHHHHHHHcCch-HHHHHHHHHH
Q 044786 236 NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK--KNIASWNAMLVGYIRNGLY-VEATKFLYLM 312 (340)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~~~~-~~a~~~~~~m 312 (340)
+ +..+++.+.. .+.+++.+.+.+.-+....|++++|++++++.... .++.+...++......|+. +.+.+.+.++
T Consensus 185 ~-A~y~f~El~~-~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 185 D-AFYIFEELSD-KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp H-HHHHHHHHHC-CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred H-HHHHHHHHHh-ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 3 5555555433 34556666666666666666666666666665442 3445555555555555655 4455566665
Q ss_pred HHc
Q 044786 313 KAS 315 (340)
Q Consensus 313 ~~~ 315 (340)
+..
T Consensus 263 ~~~ 265 (290)
T PF04733_consen 263 KQS 265 (290)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
No 75
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.83 E-value=2.9e-07 Score=75.30 Aligned_cols=251 Identities=8% Similarity=0.030 Sum_probs=159.3
Q ss_pred HHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCcCCcccHHHHHHHHHcccChhHH
Q 044786 17 IKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQEC 96 (340)
Q Consensus 17 i~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 96 (340)
++.+.-.|++..++.-.+ .... .-+.+.....-+.+++.-.|+.+.++.-...-..|.......+...+....+-+.+
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~-~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSF-SPENKLERDFYQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTS-TCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHHHHhhhHHHHHHHhh-ccCC-CchhHHHHHHHHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHHH
Confidence 445566788888886666 2222 11223445556678888889988777666555555655565555544433444445
Q ss_pred HHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHH
Q 044786 97 ITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFS 176 (340)
Q Consensus 97 ~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 176 (340)
+.-+++..... . ...+..........+...|++++|++++... .+.......+..|.+.++++.|.+.++
T Consensus 86 l~~l~~~~~~~--~--~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~ 155 (290)
T PF04733_consen 86 LEELKELLADQ--A--GESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELK 155 (290)
T ss_dssp HHHHHHCCCTS-------CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHhc--c--ccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44444333221 1 0123333333345667789999999887532 356677788999999999999999999
Q ss_pred HcccCC-hhhHHHHHHHHh----ccCchhHHHHHHHHHhhcccCCChhhHHHHHHhcccCCchhchHHHHHHHHHHhCCC
Q 044786 177 QLKRHN-TVVWTAKIVNNC----REGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLE 251 (340)
Q Consensus 177 ~~~~~~-~~~~~~li~~~~----~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (340)
.|.+-+ -.+...+..++. ..+.+.+|..+|+++.+. ..++..+.+.+..++...|++++ |..++......+ +
T Consensus 156 ~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~e-Ae~~L~~al~~~-~ 232 (290)
T PF04733_consen 156 NMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEE-AEELLEEALEKD-P 232 (290)
T ss_dssp HHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHH-HHHHHHHHCCC--C
T ss_pred HHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHH-HHHHHHHHHHhc-c
Confidence 998652 223333444333 345799999999998765 56788888999999999999988 666666554432 3
Q ss_pred ccHHHHHHHHHHHhccCCH-HHHHHHHHHhhc
Q 044786 252 SDEYVQCGLVDMYGKCRLL-RDAERVFELIVD 282 (340)
Q Consensus 252 ~~~~~~~~li~~~~~~~~~-~~A~~~~~~~~~ 282 (340)
-++.+...++-+....|+. +.+.+.+.+++.
T Consensus 233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 233 NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 3666777788887888887 778889988875
No 76
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.80 E-value=2.3e-06 Score=67.59 Aligned_cols=305 Identities=11% Similarity=0.014 Sum_probs=196.0
Q ss_pred CCCCCCCCCcchhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCcC--Ccc
Q 044786 1 MDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLR--DFN 78 (340)
Q Consensus 1 M~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~ 78 (340)
|...|+....-.+.+++..+.+..++..|++++..-.++ -+.+....+.|..+|.+..++..|-..++++... ...
T Consensus 1 M~~~g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er--~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~ 78 (459)
T KOG4340|consen 1 MAGSGAQIPEGEFTAVVYRLIRDARYADAIQLLGSELER--SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELE 78 (459)
T ss_pred CCcccccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHH
Confidence 566777777777899999999999999999999887766 2337788888889999999999999999998742 222
Q ss_pred cHHH-HHHHHHcccChhHHHHHHHHHHHhh----------------cC-C---------ccccchHHHHHHHHHHhhhcc
Q 044786 79 SWAV-MIVGYVDVADYQECITLFAEMMKRK----------------KG-H---------MLLVFPAWIIVCVLKACVCTM 131 (340)
Q Consensus 79 ~~~~-li~~~~~~g~~~~a~~~~~~m~~~~----------------~~-~---------~~~~~~~~~~~~ll~~~~~~~ 131 (340)
-|.. -..++-+.+.+..|+++...|.... .+ . .+-..+..+.+.......+.|
T Consensus 79 qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykeg 158 (459)
T KOG4340|consen 79 QYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEG 158 (459)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccc
Confidence 2221 1233445556666666655554311 00 0 000123444455555566889
Q ss_pred chhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHcccC-----------------Ch------h--hH
Q 044786 132 NMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH-----------------NT------V--VW 186 (340)
Q Consensus 132 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----------------~~------~--~~ 186 (340)
+++.|.+-|+...+.+--.....|+..+. ..+.|+++.|.+...++.++ |+ . .-
T Consensus 159 qyEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~ 237 (459)
T KOG4340|consen 159 QYEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQ 237 (459)
T ss_pred cHHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHH
Confidence 99999999998876543334557776554 44668899999988887643 11 1 13
Q ss_pred HHHHHHH-------hccCchhHHHHHHHHHhhc-ccCCChhhHHHHHHhcccCCchhchHHHHHHHHHHhCCCccHHHHH
Q 044786 187 TAKIVNN-------CREGHFHQVFNDFKEMGRE-RIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQC 258 (340)
Q Consensus 187 ~~li~~~-------~~~~~~~~a~~~~~~m~~~-~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (340)
+.++.++ .+.|+++.|.+-+-+|.-+ .-..|++|.+.+.-.-.. +++.+ ...-++.+...+ +-...||.
T Consensus 238 Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~-~~p~~-g~~KLqFLL~~n-PfP~ETFA 314 (459)
T KOG4340|consen 238 SALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMD-ARPTE-GFEKLQFLLQQN-PFPPETFA 314 (459)
T ss_pred HHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhccc-CCccc-cHHHHHHHHhcC-CCChHHHH
Confidence 3444443 3678899998888888533 234577887665433222 22323 333344444432 23567888
Q ss_pred HHHHHHhccCCHHHHHHHHHHhhcC----CcHHHHHHHHHHHH-HcCchHHHHHHHHHH
Q 044786 259 GLVDMYGKCRLLRDAERVFELIVDK----KNIASWNAMLVGYI-RNGLYVEATKFLYLM 312 (340)
Q Consensus 259 ~li~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~li~~~~-~~~~~~~a~~~~~~m 312 (340)
.++-.||+..-++.|-+++.+-... -+...|+ |+.++. -.-..++|++-++.+
T Consensus 315 NlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 315 NLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred HHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHH
Confidence 9999999999999999998765431 2444454 344444 345678887766665
No 77
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.77 E-value=4.1e-05 Score=66.83 Aligned_cols=300 Identities=10% Similarity=0.016 Sum_probs=152.3
Q ss_pred HHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCcCCcccHHHHHHHHHcccChhHH
Q 044786 17 IKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQEC 96 (340)
Q Consensus 17 i~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 96 (340)
++...+.|+.......|+.....-.+.-....|...+......+-++.+.+++++..+-++..-+-.|..++..+++++|
T Consensus 109 lq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~ea 188 (835)
T KOG2047|consen 109 LQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEA 188 (835)
T ss_pred HHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHH
Confidence 34444555566666666665554222223345656666666666677777777777766666666677777777777777
Q ss_pred HHHHHHHHHhhcCCcc-ccchHHHHHHHHHHhhhccch---hhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHH
Q 044786 97 ITLFAEMMKRKKGHML-LVFPAWIIVCVLKACVCTMNM---ELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDAD 172 (340)
Q Consensus 97 ~~~~~~m~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 172 (340)
.+.+........-+.. -+.+...|..+....++.-+. -.+.++++.+...-...-...|++|.+.|.+.|++++|.
T Consensus 189 a~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekar 268 (835)
T KOG2047|consen 189 AQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKAR 268 (835)
T ss_pred HHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 7777666543200000 022333444443333332221 112222222221111111235566666666666666666
Q ss_pred HHHHHcccC--ChhhHHHHHHHH---------------------------------------------------------
Q 044786 173 FVFSQLKRH--NTVVWTAKIVNN--------------------------------------------------------- 193 (340)
Q Consensus 173 ~~~~~~~~~--~~~~~~~li~~~--------------------------------------------------------- 193 (340)
.+|++.... .+.-|+.+..+|
T Consensus 269 Dvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~n 348 (835)
T KOG2047|consen 269 DVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHN 348 (835)
T ss_pred HHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCcc
Confidence 666553321 000011111111
Q ss_pred ---------hccCchhHHHHHHHHHhhcccCCC------hhhHHHHHHhcccCCchhchHHHHHHHHHHhCCCcc---HH
Q 044786 194 ---------CREGHFHQVFNDFKEMGRERIKKN------SYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESD---EY 255 (340)
Q Consensus 194 ---------~~~~~~~~a~~~~~~m~~~~~~p~------~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 255 (340)
+..|+..+-...|.+.++. +.|- ...|..+..-|-..|+++. +..+++...+...+-- ..
T Consensus 349 V~eW~kRV~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~-aRvifeka~~V~y~~v~dLa~ 426 (835)
T KOG2047|consen 349 VEEWHKRVKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDD-ARVIFEKATKVPYKTVEDLAE 426 (835)
T ss_pred HHHHHhhhhhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHH-HHHHHHHhhcCCccchHHHHH
Confidence 1124445555555555442 2221 1234555555666777755 7777766665544332 34
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhcCC--------------------cHHHHHHHHHHHHHcCchHHHHHHHHHHHHc
Q 044786 256 VQCGLVDMYGKCRLLRDAERVFELIVDKK--------------------NIASWNAMLVGYIRNGLYVEATKFLYLMKAS 315 (340)
Q Consensus 256 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~--------------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 315 (340)
+|..-.++-.+..+++.|.++.+....-| +...|..++.---..|-++....+|+++.+.
T Consensus 427 vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidL 506 (835)
T KOG2047|consen 427 VWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDL 506 (835)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 55555555566667777777776654311 2334555555555566777777777777666
Q ss_pred CCc
Q 044786 316 GIQ 318 (340)
Q Consensus 316 g~~ 318 (340)
.+.
T Consensus 507 ria 509 (835)
T KOG2047|consen 507 RIA 509 (835)
T ss_pred hcC
Confidence 544
No 78
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.77 E-value=2.2e-05 Score=67.21 Aligned_cols=253 Identities=11% Similarity=0.028 Sum_probs=157.8
Q ss_pred HhhhccchhhHHHHHHHHHhhcCCCCCHHHHHH---HHHHHHhcCChhHHHHHHhhcCcCCcc---cHHHHHHHHHcccC
Q 044786 19 ECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNR---LLLMHVSCGQLDTARQLFDEMPLRDFN---SWAVMIVGYVDVAD 92 (340)
Q Consensus 19 ~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~---li~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~li~~~~~~g~ 92 (340)
.+...|++++|.+.++..... .+.+...+.. ........+..+.+.+.++.....+.. ....+...+...|+
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~ 129 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDD--YPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQ 129 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCC
Confidence 446789999999999999876 3445545442 222223356667777777653333332 23344567888999
Q ss_pred hhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCC-Cch--hHHHHHHHHHHhhcCHH
Q 044786 93 YQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSS-RNI--SLTGSLINFYGKFRCLE 169 (340)
Q Consensus 93 ~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~~~~~ 169 (340)
+++|.+.+++..+.. +.+...+..+...+...|++++|...++........ |+. ..|..+...+...|+++
T Consensus 130 ~~~A~~~~~~al~~~------p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~ 203 (355)
T cd05804 130 YDRAEEAARRALELN------PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYE 203 (355)
T ss_pred HHHHHHHHHHHHhhC------CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHH
Confidence 999999999999984 455677888899999999999999999988876432 232 34557888999999999
Q ss_pred HHHHHHHHcccCCh--hhH----H--HHHHHHhccCchhHHHHHHHHHhhc---ccCC--ChhhHHHHHHhcccCCchhc
Q 044786 170 DADFVFSQLKRHNT--VVW----T--AKIVNNCREGHFHQVFNDFKEMGRE---RIKK--NSYTFSSVLKACGGVDDDGN 236 (340)
Q Consensus 170 ~a~~~~~~~~~~~~--~~~----~--~li~~~~~~~~~~~a~~~~~~m~~~---~~~p--~~~t~~~ll~~~~~~~~~~~ 236 (340)
+|..++++...... ... + .++.-+...|....+.+ ++.+... .... ..........++...|+..+
T Consensus 204 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~-w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 282 (355)
T cd05804 204 AALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDR-WEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDA 282 (355)
T ss_pred HHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHH-HHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHH
Confidence 99999999753322 111 1 22222233343222222 2222211 1111 11222245566778888766
Q ss_pred hHHHHHHHHHHhCCC------ccHHHHHHHHH--HHhccCCHHHHHHHHHHhh
Q 044786 237 CGRQMHANIVKIGLE------SDEYVQCGLVD--MYGKCRLLRDAERVFELIV 281 (340)
Q Consensus 237 ~~~~~~~~~~~~~~~------~~~~~~~~li~--~~~~~~~~~~A~~~~~~~~ 281 (340)
+..+++.+...... ....+-..++. ++...|+.++|.+.+....
T Consensus 283 -a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al 334 (355)
T cd05804 283 -LDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVR 334 (355)
T ss_pred -HHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77777666553322 11112222333 4458899999999998775
No 79
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.74 E-value=1.3e-05 Score=74.40 Aligned_cols=262 Identities=12% Similarity=0.059 Sum_probs=164.0
Q ss_pred cchhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCChhHHHHHHhhcCcCCcccHHHHHHHHH
Q 044786 10 TDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTL-LFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYV 88 (340)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~ 88 (340)
...+..|+..+...+++++|.++.+..... .|+. ..|-.+...+.+.++.+++..+ .++..+.
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~---~P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~ 94 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKE---HKKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFS 94 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhcc
Confidence 345566666666677777777777655443 3332 2222222344455554333332 3333444
Q ss_pred cccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCH
Q 044786 89 DVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168 (340)
Q Consensus 89 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 168 (340)
...++.-+..+...|... .-+...+..+..+|-+.|+.+++.++|+++++.. .-|+.+.|.+...|... ++
T Consensus 95 ~~~~~~~ve~~~~~i~~~-------~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 95 QNLKWAIVEHICDKILLY-------GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred cccchhHHHHHHHHHHhh-------hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hH
Confidence 444554444444455444 3445688888899999999999999999999988 34888899999999998 99
Q ss_pred HHHHHHHHHcccCChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCChhhHHHHHHhcccCCchhchHHHHHHHHHHh
Q 044786 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKI 248 (340)
Q Consensus 169 ~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~ 248 (340)
++|.+++.+.. ..|...+++.++.++|.++... .|+...+ ...+.+.+...
T Consensus 166 ~KA~~m~~KAV-----------~~~i~~kq~~~~~e~W~k~~~~--~~~d~d~----------------f~~i~~ki~~~ 216 (906)
T PRK14720 166 EKAITYLKKAI-----------YRFIKKKQYVGIEEIWSKLVHY--NSDDFDF----------------FLRIERKVLGH 216 (906)
T ss_pred HHHHHHHHHHH-----------HHHHhhhcchHHHHHHHHHHhc--CcccchH----------------HHHHHHHHHhh
Confidence 99999887653 3367777899999999999874 3443322 22222222222
Q ss_pred -CCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhc--CCcHHHHHHHHHHHHHcCchHHHHHHHHH-HHHcCCccchhHH
Q 044786 249 -GLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD--KKNIASWNAMLVGYIRNGLYVEATKFLYL-MKASGIQIQESLI 324 (340)
Q Consensus 249 -~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~-m~~~g~~~~~~t~ 324 (340)
|..--..++-.+-..|-..++++++..+++.+.+ +.|.....-++.+|. +.+.. ...|++ ++-.|+.-+..++
T Consensus 217 ~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~s~l~~~~~~~ 293 (906)
T PRK14720 217 REFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKD-HSLLEDYLKMSDIGNNRKPV 293 (906)
T ss_pred hccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccC-cchHHHHHHHhccccCCccH
Confidence 3334455666777888899999999999999987 346666777777776 33333 223333 3334555444444
Q ss_pred HHHH
Q 044786 325 NDLR 328 (340)
Q Consensus 325 ~~ll 328 (340)
..-|
T Consensus 294 ~~~i 297 (906)
T PRK14720 294 KDCI 297 (906)
T ss_pred HHHH
Confidence 4333
No 80
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.70 E-value=2.3e-05 Score=69.12 Aligned_cols=256 Identities=9% Similarity=-0.025 Sum_probs=174.2
Q ss_pred HHHHHhcCChhHHHHHHhhcCcC--Ccc-cHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhh-
Q 044786 53 LLMHVSCGQLDTARQLFDEMPLR--DFN-SWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACV- 128 (340)
Q Consensus 53 i~~~~~~~~~~~a~~~~~~~~~~--~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~- 128 (340)
...+...|++++|++.++.-... |.. ........+.+.|+.++|..+|..++.. .|+...|...+..+.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r-------NPdn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR-------NPDNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------CCCcHHHHHHHHHHHh
Confidence 34567889999999999876643 333 4566778899999999999999999999 577777776666655
Q ss_pred ---h--ccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHH-HHHHHHHHcccCCh-hhHHHHHHHHhccCchhH
Q 044786 129 ---C--TMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE-DADFVFSQLKRHNT-VVWTAKIVNNCREGHFHQ 201 (340)
Q Consensus 129 ---~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~ 201 (340)
. ..+.+...++|+++...-+. ......+.-.+..-..+. .+...+..+..+++ .+|+.+-..|....+..-
T Consensus 84 ~~~~~~~~~~~~~~~~y~~l~~~yp~--s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~ 161 (517)
T PF12569_consen 84 LQLQLSDEDVEKLLELYDELAEKYPR--SDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAI 161 (517)
T ss_pred hhcccccccHHHHHHHHHHHHHhCcc--ccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHH
Confidence 1 22567778888888666422 222222211122222222 33444555555554 456666666665555555
Q ss_pred HHHHHHHHhhc----c----------cCCCh--hhHHHHHHhcccCCchhchHHHHHHHHHHhCCCccHHHHHHHHHHHh
Q 044786 202 VFNDFKEMGRE----R----------IKKNS--YTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYG 265 (340)
Q Consensus 202 a~~~~~~m~~~----~----------~~p~~--~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 265 (340)
...++...... + -.|+. .++.-+-..|-..|++++ |..+.+..+... +-.+..|..-...|-
T Consensus 162 i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~-Al~~Id~aI~ht-Pt~~ely~~KarilK 239 (517)
T PF12569_consen 162 IESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEK-ALEYIDKAIEHT-PTLVELYMTKARILK 239 (517)
T ss_pred HHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHH-HHHHHHHHHhcC-CCcHHHHHHHHHHHH
Confidence 55566555432 1 12333 244555666788999977 777777666653 224778888999999
Q ss_pred ccCCHHHHHHHHHHhhc--CCcHHHHHHHHHHHHHcCchHHHHHHHHHHHHcCCcc
Q 044786 266 KCRLLRDAERVFELIVD--KKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQI 319 (340)
Q Consensus 266 ~~~~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~ 319 (340)
+.|++.+|.+.++..+. ..|...=+....-+.+.|++++|.+++......+..|
T Consensus 240 h~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~ 295 (517)
T PF12569_consen 240 HAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDP 295 (517)
T ss_pred HCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCc
Confidence 99999999999999886 3577777778888899999999999999887776543
No 81
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=3.1e-05 Score=64.12 Aligned_cols=262 Identities=9% Similarity=0.015 Sum_probs=186.0
Q ss_pred CCCCcchhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHH-HHHHHHHHHHhcCChhHHHHHHhhcCcC---CcccHH
Q 044786 6 LPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLL-FLNRLLLMHVSCGQLDTARQLFDEMPLR---DFNSWA 81 (340)
Q Consensus 6 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~ 81 (340)
++-+......+.+.+...|+.+.|...|+..... .|+.. ....-.-.+.+.|+.+....+...+... ....|-
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~---dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wf 304 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA---NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWF 304 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC---ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhh
Confidence 4566777888999999999999999999998855 44332 1112222346778888877777776633 344455
Q ss_pred HHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHH
Q 044786 82 VMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINF 161 (340)
Q Consensus 82 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 161 (340)
.-........++..|+.+-++.++.+ +.+...|..=...+.+.++.++|.-.|+......+. +...|..|+.+
T Consensus 305 V~~~~l~~~K~~~rAL~~~eK~I~~~------~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~-rL~~Y~GL~hs 377 (564)
T KOG1174|consen 305 VHAQLLYDEKKFERALNFVEKCIDSE------PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPY-RLEIYRGLFHS 377 (564)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHhccC------cccchHHHhccHHHHhccchHHHHHHHHHHHhcchh-hHHHHHHHHHH
Confidence 55556667788999999998888763 344455655567778889999999999988877533 78899999999
Q ss_pred HHhhcCHHHHHHHHHHcc---cCChhhHHHHH-HHHhc-cCchhHHHHHHHHHhhcccCCCh-hhHHHHHHhcccCCchh
Q 044786 162 YGKFRCLEDADFVFSQLK---RHNTVVWTAKI-VNNCR-EGHFHQVFNDFKEMGRERIKKNS-YTFSSVLKACGGVDDDG 235 (340)
Q Consensus 162 ~~~~~~~~~a~~~~~~~~---~~~~~~~~~li-~~~~~-~~~~~~a~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~~~~~ 235 (340)
|...|++.+|..+-+... ..+..+.+.+. ..+.. ..--++|..++++-.. +.|+. ...+.+...|...|..+
T Consensus 378 YLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~ 455 (564)
T KOG1174|consen 378 YLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTK 455 (564)
T ss_pred HHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccc
Confidence 999999999877665533 22444444332 22221 2234788888877665 46763 34556666677788887
Q ss_pred chHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhc
Q 044786 236 NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282 (340)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 282 (340)
+ +..+++.... ..||...-+.|.+.+...+.+.+|.+.|.....
T Consensus 456 D-~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 456 D-IIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred h-HHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 7 5556555443 468899999999999999999999999987764
No 82
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.69 E-value=4.2e-06 Score=70.45 Aligned_cols=217 Identities=12% Similarity=0.001 Sum_probs=162.5
Q ss_pred HHhcCChhHHHHHHhhcCcC---CcccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccc
Q 044786 56 HVSCGQLDTARQLFDEMPLR---DFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN 132 (340)
Q Consensus 56 ~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 132 (340)
+.-.|+.-.|.+-|+....- +...|--+...|....+.++..+.|++....+ +-+..+|..=.....-.++
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld------p~n~dvYyHRgQm~flL~q 409 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD------PENPDVYYHRGQMRFLLQQ 409 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC------CCCCchhHhHHHHHHHHHH
Confidence 34457888888888877632 33347777788999999999999999998875 5566677777777777889
Q ss_pred hhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHcccC---ChhhHHHHHHHHhccCchhHHHHHHHHH
Q 044786 133 MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH---NTVVWTAKIVNNCREGHFHQVFNDFKEM 209 (340)
Q Consensus 133 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m 209 (340)
+++|..=|+...+.... +...|-.+.-+..+.++++++...|++..++ .+..|+.....+...+++++|.+.|+..
T Consensus 410 ~e~A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~a 488 (606)
T KOG0547|consen 410 YEEAIADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKA 488 (606)
T ss_pred HHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHH
Confidence 99999999998888654 6777888888888999999999999998764 5678999999999999999999999988
Q ss_pred hhc-----ccCCChhhH-HHHHHhcccCCchhchHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhh
Q 044786 210 GRE-----RIKKNSYTF-SSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIV 281 (340)
Q Consensus 210 ~~~-----~~~p~~~t~-~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 281 (340)
.+. ++..+..++ +-.+-.+.-.+++.. +..+++...+.. +-....|.+|...-.+.|++++|.++|++..
T Consensus 489 i~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~-a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 489 IELEPREHLIIVNAAPLVHKALLVLQWKEDINQ-AENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred HhhccccccccccchhhhhhhHhhhchhhhHHH-HHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 653 111122222 111112223366644 667766665533 2255788999999999999999999999865
No 83
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.67 E-value=4.3e-08 Score=52.47 Aligned_cols=35 Identities=23% Similarity=0.361 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHcCCccch
Q 044786 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQE 321 (340)
Q Consensus 287 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 321 (340)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999984
No 84
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.66 E-value=0.00017 Score=63.14 Aligned_cols=311 Identities=12% Similarity=0.044 Sum_probs=177.9
Q ss_pred cchhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCc---CCcccHHHHHHH
Q 044786 10 TDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL---RDFNSWAVMIVG 86 (340)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~ 86 (340)
...|+.+--.+....++++|++.|...... -+.|...+..+--.-++.|+++..........+ .....|-.+..+
T Consensus 75 ~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~--~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs 152 (700)
T KOG1156|consen 75 HVCWHVLGLLQRSDKKYDEAIKCYRNALKI--EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVA 152 (700)
T ss_pred chhHHHHHHHHhhhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 344555555555667788888888877765 234566666666666666666666655554442 244467888888
Q ss_pred HHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHH------hhhccchhhHHHHHHHHHHcCCCCchhHHHHHHH
Q 044786 87 YVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKA------CVCTMNMELGKQVHGLLFKLGSSRNISLTGSLIN 160 (340)
Q Consensus 87 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 160 (340)
+.-.|+...|..+.++..+... - .|+...+...... ....|.++.|.+.+..-...- ......-.+-.+
T Consensus 153 ~~L~g~y~~A~~il~ef~~t~~-~---~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i-~Dkla~~e~ka~ 227 (700)
T KOG1156|consen 153 QHLLGEYKMALEILEEFEKTQN-T---SPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI-VDKLAFEETKAD 227 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc-c---CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH-HHHHHHhhhHHH
Confidence 8888899999998888887631 1 3555544433332 334556666665554333221 111222234556
Q ss_pred HHHhhcCHHHHHHHHHHcccC--ChhhHH-HHHHHHhc-cCch----------------------------------hHH
Q 044786 161 FYGKFRCLEDADFVFSQLKRH--NTVVWT-AKIVNNCR-EGHF----------------------------------HQV 202 (340)
Q Consensus 161 ~~~~~~~~~~a~~~~~~~~~~--~~~~~~-~li~~~~~-~~~~----------------------------------~~a 202 (340)
.+.+.+++++|..++..+..+ |..-|+ .+..++.+ .+.. +..
T Consensus 228 l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~v 307 (700)
T KOG1156|consen 228 LLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIV 307 (700)
T ss_pred HHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHH
Confidence 778888899998888887755 333333 33333321 1111 122
Q ss_pred HHHHHHHhhcccCCChhhHHHHHHhcccCCc---hhchHHHHHHHHHHhCC----------CccHHHH--HHHHHHHhcc
Q 044786 203 FNDFKEMGRERIKKNSYTFSSVLKACGGVDD---DGNCGRQMHANIVKIGL----------ESDEYVQ--CGLVDMYGKC 267 (340)
Q Consensus 203 ~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~---~~~~~~~~~~~~~~~~~----------~~~~~~~--~~li~~~~~~ 267 (340)
-.+++.+.+.|+++-.. .+..-|-.... .++.+..+...+...|. +|++..| -.++..|-+.
T Consensus 308 dkyL~~~l~Kg~p~vf~---dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~ 384 (700)
T KOG1156|consen 308 DKYLRPLLSKGVPSVFK---DLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKL 384 (700)
T ss_pred HHHHHHHhhcCCCchhh---hhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHc
Confidence 23333344445443222 22222211111 11112222222222211 4555544 4567778889
Q ss_pred CCHHHHHHHHHHhhcC-CcH-HHHHHHHHHHHHcCchHHHHHHHHHHHHcCC---ccchhHHHHHHHH
Q 044786 268 RLLRDAERVFELIVDK-KNI-ASWNAMLVGYIRNGLYVEATKFLYLMKASGI---QIQESLINDLRIA 330 (340)
Q Consensus 268 ~~~~~A~~~~~~~~~~-~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~---~~~~~t~~~ll~a 330 (340)
|+++.|...++...+. |+. .-|-.-.+.+...|+.++|..++++.++.+. -.|..|-..+|+|
T Consensus 385 g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrA 452 (700)
T KOG1156|consen 385 GDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRA 452 (700)
T ss_pred ccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHc
Confidence 9999999999998864 543 3455556788999999999999999887653 3455555555554
No 85
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.63 E-value=5.1e-06 Score=66.55 Aligned_cols=177 Identities=12% Similarity=0.016 Sum_probs=115.5
Q ss_pred CcchhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCH---HHHHHHHHHHHhcCChhHHHHHHhhcCc--C-Ccc---c
Q 044786 9 TTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTL---LFLNRLLLMHVSCGQLDTARQLFDEMPL--R-DFN---S 79 (340)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~---~ 79 (340)
.+..+......+...|+++.|...|+.+... .+.+. ..+..+..++.+.|++++|...++.+.+ | +.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 3445666777777888888888888888765 22222 4566777788888888888888888763 2 222 2
Q ss_pred HHHHHHHHHcc--------cChhHHHHHHHHHHHhhcCCccccchHH-HHHHHHHHhhhccchhhHHHHHHHHHHcCCCC
Q 044786 80 WAVMIVGYVDV--------ADYQECITLFAEMMKRKKGHMLLVFPAW-IIVCVLKACVCTMNMELGKQVHGLLFKLGSSR 150 (340)
Q Consensus 80 ~~~li~~~~~~--------g~~~~a~~~~~~m~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 150 (340)
+..+..++... |++++|.+.|+.+... .|+.. ....+..... .... .
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-------~p~~~~~~~a~~~~~~----~~~~------~------- 165 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR-------YPNSEYAPDAKKRMDY----LRNR------L------- 165 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH-------CCCChhHHHHHHHHHH----HHHH------H-------
Confidence 33444444443 6778888888888877 34332 2211111100 0000 0
Q ss_pred chhHHHHHHHHHHhhcCHHHHHHHHHHcccC------ChhhHHHHHHHHhccCchhHHHHHHHHHhhc
Q 044786 151 NISLTGSLINFYGKFRCLEDADFVFSQLKRH------NTVVWTAKIVNNCREGHFHQVFNDFKEMGRE 212 (340)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 212 (340)
......+...|.+.|++++|...++...+. ....+..+..++...|++++|..+++.+...
T Consensus 166 -~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 166 -AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred -HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 001124567788999999999999887532 2357888999999999999999999888764
No 86
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.63 E-value=0.00016 Score=70.03 Aligned_cols=301 Identities=10% Similarity=0.003 Sum_probs=187.6
Q ss_pred HHHHHhhhccchhhHHHHHHHHHhhcCC-----CCCH--HHHHHHHHHHHhcCChhHHHHHHhhcCc--C--Cc----cc
Q 044786 15 CLIKECTFQKDSAGAFELLNHIRKRVNI-----KPTL--LFLNRLLLMHVSCGQLDTARQLFDEMPL--R--DF----NS 79 (340)
Q Consensus 15 ~li~~~~~~~~~~~a~~~~~~m~~~~g~-----~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~--~--~~----~~ 79 (340)
.....+...|+++++..+++.......- .+.. .....+-..+...|++++|...++.... + +. ..
T Consensus 414 ~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a 493 (903)
T PRK04841 414 LQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVA 493 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 3344456778999999999887653111 1111 1222233455678999999999887542 2 21 13
Q ss_pred HHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHc----CCC--C-ch
Q 044786 80 WAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKL----GSS--R-NI 152 (340)
Q Consensus 80 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~ 152 (340)
.+.+...+...|++++|...+.+............+...++..+...+...|+++.|...+++.... +.. + ..
T Consensus 494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 573 (903)
T PRK04841 494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHE 573 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHH
Confidence 4555666778999999999999887652111101222345666777888999999999998876543 221 1 22
Q ss_pred hHHHHHHHHHHhhcCHHHHHHHHHHcccC--------ChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCC-ChhhH--
Q 044786 153 SLTGSLINFYGKFRCLEDADFVFSQLKRH--------NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKK-NSYTF-- 221 (340)
Q Consensus 153 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~-- 221 (340)
..+..+...+...|++++|...+.+.... ....+..+...+...|++++|...+.+.....-.. ....+
T Consensus 574 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~ 653 (903)
T PRK04841 574 FLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIA 653 (903)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhh
Confidence 34455666778889999999988876421 12334556667778999999999998875421111 11111
Q ss_pred ---HHHHHhcccCCchhchHHHHHHHHHHhCCCcc---HHHHHHHHHHHhccCCHHHHHHHHHHhhcC----C----cHH
Q 044786 222 ---SSVLKACGGVDDDGNCGRQMHANIVKIGLESD---EYVQCGLVDMYGKCRLLRDAERVFELIVDK----K----NIA 287 (340)
Q Consensus 222 ---~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~~~~~----~----~~~ 287 (340)
...+..+...|+.+. +..+............ ...+..+..++...|+.++|...+++.... + ...
T Consensus 654 ~~~~~~~~~~~~~g~~~~-A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~ 732 (903)
T PRK04841 654 NADKVRLIYWQMTGDKEA-AANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNR 732 (903)
T ss_pred HHHHHHHHHHHHCCCHHH-HHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence 111233344666544 5555443322111111 112346677788999999999999887651 1 223
Q ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHcC
Q 044786 288 SWNAMLVGYIRNGLYVEATKFLYLMKASG 316 (340)
Q Consensus 288 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g 316 (340)
+...+..++.+.|+.++|...+.+..+..
T Consensus 733 ~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 733 NLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 56666778889999999999999887654
No 87
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.62 E-value=7.9e-06 Score=72.07 Aligned_cols=232 Identities=9% Similarity=0.055 Sum_probs=174.9
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHhhcCcCCcccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHH
Q 044786 43 KPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVC 122 (340)
Q Consensus 43 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ 122 (340)
+|--..-..+...+...|-...|..+|+++ ..|.-.|.+|...|+..+|..+..+-.+. +|+...|..
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek-------~~d~~lyc~ 462 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEK-------DPDPRLYCL 462 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcC-------CCcchhHHH
Confidence 343444456667788889999999999987 47888999999999999999999998886 799999999
Q ss_pred HHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHcccC---ChhhHHHHHHHHhccCch
Q 044786 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH---NTVVWTAKIVNNCREGHF 199 (340)
Q Consensus 123 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~ 199 (340)
+.+......-++.|.++.+..... .-..+.......++++++.+.|+.-.+- -..+|-...-+..+.+++
T Consensus 463 LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 463 LGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhh
Confidence 999988888889998887754322 1111222233468899999988875533 455777777788889999
Q ss_pred hHHHHHHHHHhhcccCCCh-hhHHHHHHhcccCCchhchHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHH
Q 044786 200 HQVFNDFKEMGRERIKKNS-YTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFE 278 (340)
Q Consensus 200 ~~a~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 278 (340)
+.|.+.|..-+. ..||. ..|+.+-.+|.+.++..+ +...+....+.+ .-+...|...+....+.|.+++|.+.+.
T Consensus 536 q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~r-a~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~ 611 (777)
T KOG1128|consen 536 QAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKR-AFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYH 611 (777)
T ss_pred HHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHH-HHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHH
Confidence 999999988876 46764 568999999999998877 667777777766 5567778888888889999999999988
Q ss_pred Hhhc----CCcHHHHHHHHHHHH
Q 044786 279 LIVD----KKNIASWNAMLVGYI 297 (340)
Q Consensus 279 ~~~~----~~~~~~~~~li~~~~ 297 (340)
++.. ..|......++....
T Consensus 612 rll~~~~~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 612 RLLDLRKKYKDDEVLLIIVRTVL 634 (777)
T ss_pred HHHHhhhhcccchhhHHHHHHHH
Confidence 8865 124444444444444
No 88
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.61 E-value=2.5e-05 Score=73.74 Aligned_cols=217 Identities=9% Similarity=0.043 Sum_probs=100.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHhhcCcC--------CcccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccch
Q 044786 45 TLLFLNRLLLMHVSCGQLDTARQLFDEMPLR--------DFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP 116 (340)
Q Consensus 45 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 116 (340)
+...|-.-|..+...++.++|.+++++.... -...|.++++.-...|.-+...++|++..+. --.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy-------cd~ 1529 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY-------CDA 1529 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh-------cch
Confidence 3444555555555555555555555554411 1124555555444445555555555555544 222
Q ss_pred HHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHcccC-----ChhhHHHHHH
Q 044786 117 AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH-----NTVVWTAKIV 191 (340)
Q Consensus 117 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~li~ 191 (340)
-.+|..|...|.+.+..++|.++++.|.+.-- ....+|...+..+.+..+-+.|..++.+..+. .+....-.+.
T Consensus 1530 ~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAq 1608 (1710)
T KOG1070|consen 1530 YTVHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQ 1608 (1710)
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHH
Confidence 33445555555555555555555555544321 23444555555555555555555555443311 2222233333
Q ss_pred HHhccCchhHHHHHHHHHhhcccCCChhhHHHHHHhcccCCchhchHHHHHHHHHHhCCCccH--HHHHHHHHHHhccCC
Q 044786 192 NNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDE--YVQCGLVDMYGKCRL 269 (340)
Q Consensus 192 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~ 269 (340)
.-.+.|+.+.+..+|+.....-.+ -...|+..+..-.+.|+... ++.+|+.....++.|-. ..|.-.++.--+.|+
T Consensus 1609 LEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~-vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gd 1686 (1710)
T KOG1070|consen 1609 LEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKY-VRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGD 1686 (1710)
T ss_pred HHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHH-HHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCc
Confidence 334455555555555555443211 12345555555555555433 55555555555554422 233444443334444
Q ss_pred HH
Q 044786 270 LR 271 (340)
Q Consensus 270 ~~ 271 (340)
-.
T Consensus 1687 e~ 1688 (1710)
T KOG1070|consen 1687 EK 1688 (1710)
T ss_pred hh
Confidence 33
No 89
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.60 E-value=8.6e-08 Score=50.89 Aligned_cols=33 Identities=24% Similarity=0.318 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHcCCcc
Q 044786 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQI 319 (340)
Q Consensus 287 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~ 319 (340)
.+|+.+|.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999988
No 90
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.58 E-value=1.3e-05 Score=62.01 Aligned_cols=153 Identities=5% Similarity=-0.020 Sum_probs=114.6
Q ss_pred HHHHHhcCChhHHHHHHhhcCcCCcccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccc
Q 044786 53 LLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN 132 (340)
Q Consensus 53 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 132 (340)
+..|...|+++.+....+.+..+. . .+...++.+++...+++....+ +.+...|..+...+...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~-~-------~~~~~~~~~~~i~~l~~~L~~~------P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL-H-------QFASQQTPEAQLQALQDKIRAN------PQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc-c-------cccCchhHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHCCC
Confidence 346778888887766554443321 1 1223667788888888888774 6778889999999999999
Q ss_pred hhhHHHHHHHHHHcCCCCchhHHHHHHHH-HHhhcC--HHHHHHHHHHcccC---ChhhHHHHHHHHhccCchhHHHHHH
Q 044786 133 MELGKQVHGLLFKLGSSRNISLTGSLINF-YGKFRC--LEDADFVFSQLKRH---NTVVWTAKIVNNCREGHFHQVFNDF 206 (340)
Q Consensus 133 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~--~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~ 206 (340)
+++|...|+...+.... +...+..+..+ +...|+ .++|.+++++..+. +..++..+...+.+.|++++|+..|
T Consensus 89 ~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 89 YDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999988888754 67777777776 467677 48999999988643 6678888889999999999999999
Q ss_pred HHHhhcccCCChhhH
Q 044786 207 KEMGRERIKKNSYTF 221 (340)
Q Consensus 207 ~~m~~~~~~p~~~t~ 221 (340)
+++.+.. +|+...+
T Consensus 168 ~~aL~l~-~~~~~r~ 181 (198)
T PRK10370 168 QKVLDLN-SPRVNRT 181 (198)
T ss_pred HHHHhhC-CCCccHH
Confidence 9998753 4554443
No 91
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.58 E-value=8.7e-08 Score=51.24 Aligned_cols=35 Identities=26% Similarity=0.448 Sum_probs=32.4
Q ss_pred hhHHHHHHHHhccCchhHHHHHHHHHhhcccCCCh
Q 044786 184 VVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218 (340)
Q Consensus 184 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 218 (340)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999973
No 92
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.57 E-value=2.7e-05 Score=73.55 Aligned_cols=220 Identities=9% Similarity=0.027 Sum_probs=149.2
Q ss_pred cchHHHHHHHHHHhhhccchhhHHHHHHHHHHc-CCCC---chhHHHHHHHHHHhhcCHHHHHHHHHHcccC-C-hhhHH
Q 044786 114 VFPAWIIVCVLKACVCTMNMELGKQVHGLLFKL-GSSR---NISLTGSLINFYGKFRCLEDADFVFSQLKRH-N-TVVWT 187 (340)
Q Consensus 114 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~ 187 (340)
+.++..|-..|....+.++++.|.++.++.+.. ++.- -...|.++++.-...|.-+...++|++..+- | ...|.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~ 1534 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHL 1534 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHH
Confidence 445567777788888888888888888777643 2211 2235666777666777777778888877653 3 34577
Q ss_pred HHHHHHhccCchhHHHHHHHHHhhcccCCChhhHHHHHHhcccCCchhchHHHHHHHHHHhCCC-ccHHHHHHHHHHHhc
Q 044786 188 AKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLE-SDEYVQCGLVDMYGK 266 (340)
Q Consensus 188 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~li~~~~~ 266 (340)
.|...|.+.+.+++|.++++.|.++ +.-....|...+..+.+..+- +++..++....+.-.+ -......-.++.-.+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~-~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEA-EAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHH-HHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 7888888888888888888888765 223445666777777776664 4466666665543211 134445555666678
Q ss_pred cCCHHHHHHHHHHhhcC--CcHHHHHHHHHHHHHcCchHHHHHHHHHHHHcCCccch--hHHHHHHHHhhhcC
Q 044786 267 CRLLRDAERVFELIVDK--KNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQE--SLINDLRIACSSIS 335 (340)
Q Consensus 267 ~~~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~--~t~~~ll~a~~~~g 335 (340)
.|+.+++..+|+..... .-...|+.+|+.-.++|+.+.+..+|++..+.++.|-. +.|.-.|.-=-+.|
T Consensus 1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~G 1685 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHG 1685 (1710)
T ss_pred cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcC
Confidence 88888888888887752 35678888888888888888888888888888877654 34454444333333
No 93
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.55 E-value=1.8e-05 Score=63.40 Aligned_cols=185 Identities=10% Similarity=0.004 Sum_probs=117.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHhhcCcCCc------ccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHH
Q 044786 45 TLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDF------NSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAW 118 (340)
Q Consensus 45 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ 118 (340)
....+-.+...+.+.|++++|...|+++...++ .++..+..++...|++++|...++++.+...+- .....
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~ 108 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNH---PDADY 108 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC---CchHH
Confidence 455666777778888999999998887763222 245667778888899999999999888773111 01112
Q ss_pred HHHHHHHHhhhc--------cchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHcccCChhhHHHHH
Q 044786 119 IIVCVLKACVCT--------MNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKI 190 (340)
Q Consensus 119 ~~~~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li 190 (340)
++..+..++.+. |+.+.|.+.++.+.+.... +...+..+... +...... ....-.+.
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~----~~~~~~~----------~~~~~~~a 173 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRM----DYLRNRL----------AGKELYVA 173 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHH----HHHHHHH----------HHHHHHHH
Confidence 344444555443 6778888888877766433 12222111111 0000000 00112455
Q ss_pred HHHhccCchhHHHHHHHHHhhccc-CC-ChhhHHHHHHhcccCCchhchHHHHHHHHHHh
Q 044786 191 VNNCREGHFHQVFNDFKEMGRERI-KK-NSYTFSSVLKACGGVDDDGNCGRQMHANIVKI 248 (340)
Q Consensus 191 ~~~~~~~~~~~a~~~~~~m~~~~~-~p-~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~ 248 (340)
..+.+.|++++|...+++..+... .| ....+..+..++.+.|+.++ +..+++.+...
T Consensus 174 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~-A~~~~~~l~~~ 232 (235)
T TIGR03302 174 RFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDL-AQDAAAVLGAN 232 (235)
T ss_pred HHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhh
Confidence 678899999999999999987531 12 34678899999999999977 66677766554
No 94
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.53 E-value=0.00054 Score=60.17 Aligned_cols=166 Identities=13% Similarity=0.201 Sum_probs=80.5
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHcccCChh-------hHHHHHHHHhccCchhHHHHHHHHHhhc----------ccCC
Q 044786 154 LTGSLINFYGKFRCLEDADFVFSQLKRHNTV-------VWTAKIVNNCREGHFHQVFNDFKEMGRE----------RIKK 216 (340)
Q Consensus 154 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------~~~~li~~~~~~~~~~~a~~~~~~m~~~----------~~~p 216 (340)
.|..+...|-..|+++.|..+|++..+-+-. +|-.-...-.++.+++.|++++++.... |-.|
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~p 468 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEP 468 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCc
Confidence 3456667777788888888888887654322 3433344444566777777777665421 0011
Q ss_pred -------ChhhHHHHHHhcccCCchhchHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhc---CCcH
Q 044786 217 -------NSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD---KKNI 286 (340)
Q Consensus 217 -------~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~ 286 (340)
+...|+..+..--..|-++. .+.+++.+....+.....+. .....+-...-++++.+++++-.. -|++
T Consensus 469 vQ~rlhrSlkiWs~y~DleEs~gtfes-tk~vYdriidLriaTPqii~-NyAmfLEeh~yfeesFk~YErgI~LFk~p~v 546 (835)
T KOG2047|consen 469 VQARLHRSLKIWSMYADLEESLGTFES-TKAVYDRIIDLRIATPQIII-NYAMFLEEHKYFEESFKAYERGISLFKWPNV 546 (835)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhccHHH-HHHHHHHHHHHhcCCHHHHH-HHHHHHHhhHHHHHHHHHHHcCCccCCCccH
Confidence 11112222222222333322 45555555544432221111 111122233445556665555443 1333
Q ss_pred -HHHHHHHHHHHH---cCchHHHHHHHHHHHHcCCccchh
Q 044786 287 -ASWNAMLVGYIR---NGLYVEATKFLYLMKASGIQIQES 322 (340)
Q Consensus 287 -~~~~~li~~~~~---~~~~~~a~~~~~~m~~~g~~~~~~ 322 (340)
..|+..+.-+.+ ....+.|..+|++..+ |.+|...
T Consensus 547 ~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~a 585 (835)
T KOG2047|consen 547 YDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHA 585 (835)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHH
Confidence 356655554443 2345666667766665 5554443
No 95
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.52 E-value=0.00028 Score=57.51 Aligned_cols=89 Identities=9% Similarity=-0.016 Sum_probs=55.8
Q ss_pred HHhcccCCchhchHHHHHHHHHHhCCCccHHHH-HHHHHHHhccCCHHHHHHHHHHhhcCCcHHHHHHHH-HHHHHcCch
Q 044786 225 LKACGGVDDDGNCGRQMHANIVKIGLESDEYVQ-CGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAML-VGYIRNGLY 302 (340)
Q Consensus 225 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~li-~~~~~~~~~ 302 (340)
.++.+..|.+.+ ++.++-.+....++ |..+| ..|.++|.++++++.|++++-.+..+.+..+.-.+| +-|.+.+++
T Consensus 400 AQAk~atgny~e-aEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eF 477 (557)
T KOG3785|consen 400 AQAKLATGNYVE-AEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEF 477 (557)
T ss_pred HHHHHHhcChHH-HHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH
Confidence 344455666655 66666555444433 33444 456677888888888888887775444555544444 456677777
Q ss_pred HHHHHHHHHHHHc
Q 044786 303 VEATKFLYLMKAS 315 (340)
Q Consensus 303 ~~a~~~~~~m~~~ 315 (340)
=-|.+.|+++...
T Consensus 478 yyaaKAFd~lE~l 490 (557)
T KOG3785|consen 478 YYAAKAFDELEIL 490 (557)
T ss_pred HHHHHhhhHHHcc
Confidence 7777777777544
No 96
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.51 E-value=2.1e-06 Score=75.57 Aligned_cols=187 Identities=11% Similarity=0.061 Sum_probs=130.0
Q ss_pred hhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCcCCcccHHHHHHHHHccc
Q 044786 12 MYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVA 91 (340)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g 91 (340)
.|.-+|..|+..|+..+|..+..+-.+. +||+..|..+.+......-+++|+++++....+- -..+.....+.+
T Consensus 426 mw~~vi~CY~~lg~~~kaeei~~q~lek---~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA---~r~~~~~~~~~~ 499 (777)
T KOG1128|consen 426 MWDPVILCYLLLGQHGKAEEINRQELEK---DPDPRLYCLLGDVLHDPSLYEKAWELSNYISARA---QRSLALLILSNK 499 (777)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHhcC---CCcchhHHHhhhhccChHHHHHHHHHhhhhhHHH---HHhhccccccch
Confidence 3445555666666666666665555543 5666666666666666666666666666554331 111111122367
Q ss_pred ChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHH
Q 044786 92 DYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171 (340)
Q Consensus 92 ~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 171 (340)
++.++.+.|+.-.+.. +....+|.....+..+.+++..+.+.|..-+...+. +...||.+-.+|.+.++-.+|
T Consensus 500 ~fs~~~~hle~sl~~n------plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra 572 (777)
T KOG1128|consen 500 DFSEADKHLERSLEIN------PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRA 572 (777)
T ss_pred hHHHHHHHHHHHhhcC------ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHH
Confidence 8888888888777764 556678888888888888999998888888776533 566889999999999999999
Q ss_pred HHHHHHcccC---ChhhHHHHHHHHhccCchhHHHHHHHHHhh
Q 044786 172 DFVFSQLKRH---NTVVWTAKIVNNCREGHFHQVFNDFKEMGR 211 (340)
Q Consensus 172 ~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 211 (340)
...+.+..+- +...|.+.+......|.+++|++.+.++..
T Consensus 573 ~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 573 FRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 9998887754 444577777788888999999999888764
No 97
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.51 E-value=1.9e-07 Score=49.53 Aligned_cols=34 Identities=18% Similarity=0.277 Sum_probs=31.1
Q ss_pred hhhHHHHHHHHhccCchhHHHHHHHHHhhcccCC
Q 044786 183 TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKK 216 (340)
Q Consensus 183 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 216 (340)
+.+|+.+|.+|++.|+++.|..+|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3589999999999999999999999999999887
No 98
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.51 E-value=5.5e-06 Score=70.19 Aligned_cols=118 Identities=12% Similarity=0.047 Sum_probs=59.4
Q ss_pred HHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 044786 83 MIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFY 162 (340)
Q Consensus 83 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 162 (340)
|+..+...++++.|+.+|+++.+. .|+.. ..+.+.+...++..+|.+++++..+.... +......-.+.+
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~-------~pev~--~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fL 244 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRER-------DPEVA--VLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFL 244 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhc-------CCcHH--HHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 334444445555555555555544 23322 23444444445555555555555443221 344444444555
Q ss_pred HhhcCHHHHHHHHHHccc--C-ChhhHHHHHHHHhccCchhHHHHHHHHHh
Q 044786 163 GKFRCLEDADFVFSQLKR--H-NTVVWTAKIVNNCREGHFHQVFNDFKEMG 210 (340)
Q Consensus 163 ~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 210 (340)
.+.++++.|.++.+++.+ | +..+|..|..+|.+.|+++.|+..++.+.
T Consensus 245 l~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 555555666665555542 2 33455666666666666666665555553
No 99
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.50 E-value=2.3e-05 Score=67.45 Aligned_cols=219 Identities=8% Similarity=0.056 Sum_probs=158.5
Q ss_pred hhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCcC---CcccHHHHHHHHHcccChhHH
Q 044786 20 CTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLR---DFNSWAVMIVGYVDVADYQEC 96 (340)
Q Consensus 20 ~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a 96 (340)
+.+.|++..|.-.|+...+. -+-+...|..|.......++-..|+..+++..+- |....-.|.-.|...|.-..|
T Consensus 295 lm~nG~L~~A~LafEAAVkq--dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQ--DPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhh--ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHH
Confidence 45789999999999998876 3446789999999999999988899888887643 555677777889999999999
Q ss_pred HHHHHHHHHhhcCCccccc---hHHHHHHHHHHhhhccchhhHHHHHHHH-HHcCCCCchhHHHHHHHHHHhhcCHHHHH
Q 044786 97 ITLFAEMMKRKKGHMLLVF---PAWIIVCVLKACVCTMNMELGKQVHGLL-FKLGSSRNISLTGSLINFYGKFRCLEDAD 172 (340)
Q Consensus 97 ~~~~~~m~~~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 172 (340)
++.++.-+.......-..+ +...-.. +.......+....++|-++ ...+..+|+.++..|.-.|--.|++++|.
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 9998887665200000000 0000000 1222233444555555444 45555578888889999999999999999
Q ss_pred HHHHHcc--cC-ChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCCh--hhHHHHHHhcccCCchhchHHHHHHHH
Q 044786 173 FVFSQLK--RH-NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS--YTFSSVLKACGGVDDDGNCGRQMHANI 245 (340)
Q Consensus 173 ~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~t~~~ll~~~~~~~~~~~~~~~~~~~~ 245 (340)
..|+... +| |...||.|...++...+..+|+..|++..+ ++|.. .-|| |--+|...|.+.+++..++..+
T Consensus 451 Dcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyN-lgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 451 DCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYN-LGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehh-hhhhhhhhhhHHHHHHHHHHHH
Confidence 9999875 34 778899999999999999999999999988 56763 3344 4457889999988777776654
No 100
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.47 E-value=5.4e-05 Score=60.06 Aligned_cols=272 Identities=10% Similarity=0.029 Sum_probs=163.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHhhcCcC---CcccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHH-
Q 044786 48 FLNRLLLMHVSCGQLDTARQLFDEMPLR---DFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCV- 123 (340)
Q Consensus 48 ~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~l- 123 (340)
-+.+.+.-+.+..++..|++++....++ +......+..+|-...++..|-.+++++... .|...-|...
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql-------~P~~~qYrlY~ 84 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL-------HPELEQYRLYQ 84 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------ChHHHHHHHHH
Confidence 3556677778888999999998877654 4456778888999999999999999999877 5665555432
Q ss_pred HHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHH--HHHhhcCHHHHHHHHHHcc-cCChhhHHHHHHHHhccCchh
Q 044786 124 LKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLIN--FYGKFRCLEDADFVFSQLK-RHNTVVWTAKIVNNCREGHFH 200 (340)
Q Consensus 124 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~-~~~~~~~~~li~~~~~~~~~~ 200 (340)
...+.+.+.+..|+++...|.+. |+...-..-+. .....+++..+..+.++.. +.+..+.+...-...+.|+++
T Consensus 85 AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyE 161 (459)
T KOG4340|consen 85 AQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYE 161 (459)
T ss_pred HHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHH
Confidence 35566777888888888777543 12111111111 1234567777777777776 345555555554555777888
Q ss_pred HHHHHHHHHhhc-ccCCChhhHHHHHHhcccCCchhchHHHHHHHHHHhCCCc-------------cH--------HHHH
Q 044786 201 QVFNDFKEMGRE-RIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLES-------------DE--------YVQC 258 (340)
Q Consensus 201 ~a~~~~~~m~~~-~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~--------~~~~ 258 (340)
+|.+-|+...+- |..| ...|+..+..|.+ ++... +......++..|++- |+ ..-.
T Consensus 162 aAvqkFqaAlqvsGyqp-llAYniALaHy~~-~qyas-ALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~S 238 (459)
T KOG4340|consen 162 AAVQKFQAALQVSGYQP-LLAYNLALAHYSS-RQYAS-ALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQS 238 (459)
T ss_pred HHHHHHHHHHhhcCCCc-hhHHHHHHHHHhh-hhHHH-HHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHH
Confidence 888777777654 3333 4567766655544 33334 555555566555531 11 1122
Q ss_pred HHHH-------HHhccCCHHHHHHHHHHhhcC----CcHHHHHHHHHHHHHcCchHHHHHHHHHHHHcCCccchhHHHHH
Q 044786 259 GLVD-------MYGKCRLLRDAERVFELIVDK----KNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDL 327 (340)
Q Consensus 259 ~li~-------~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~l 327 (340)
.+++ .+.+.++++.|.+-+-.|..+ .|++|...+.-.=. .+++.+..+-+.-+....- -...||..+
T Consensus 239 al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nP-fP~ETFANl 316 (459)
T KOG4340|consen 239 ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNP-FPPETFANL 316 (459)
T ss_pred HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCC-CChHHHHHH
Confidence 3333 345778888888888877542 35555544422211 2334444444444443322 345667666
Q ss_pred HHHhhhc
Q 044786 328 RIACSSI 334 (340)
Q Consensus 328 l~a~~~~ 334 (340)
+--||+.
T Consensus 317 LllyCKN 323 (459)
T KOG4340|consen 317 LLLYCKN 323 (459)
T ss_pred HHHHhhh
Confidence 6666654
No 101
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.46 E-value=2.6e-05 Score=60.65 Aligned_cols=154 Identities=11% Similarity=-0.000 Sum_probs=108.1
Q ss_pred HHHHHHHHhcCChhHHHHHHhhcC---cCCcccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHH
Q 044786 50 NRLLLMHVSCGQLDTARQLFDEMP---LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKA 126 (340)
Q Consensus 50 ~~li~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~ 126 (340)
..+-..+.-.|+-+....+..... ..|....+..+....+.|++.+|+..+++..... ++|..+|+.+.-+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~------p~d~~~~~~lgaa 143 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA------PTDWEAWNLLGAA 143 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC------CCChhhhhHHHHH
Confidence 445555666677777666666644 2244455667777888888888888888887764 6777788888888
Q ss_pred hhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHcc---cCChhhHHHHHHHHhccCchhHHH
Q 044786 127 CVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK---RHNTVVWTAKIVNNCREGHFHQVF 203 (340)
Q Consensus 127 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~ 203 (340)
|.+.|+.++|..-|.+..+.... ++..++.+.-.|.-.|+.+.|+.++.... ..|..+-..+.......|++++|.
T Consensus 144 ldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~ 222 (257)
T COG5010 144 LDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAE 222 (257)
T ss_pred HHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHH
Confidence 88888888888888777776543 45566777777777788888888777653 226666677777777788888887
Q ss_pred HHHHHHh
Q 044786 204 NDFKEMG 210 (340)
Q Consensus 204 ~~~~~m~ 210 (340)
++...-.
T Consensus 223 ~i~~~e~ 229 (257)
T COG5010 223 DIAVQEL 229 (257)
T ss_pred hhccccc
Confidence 7765443
No 102
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.44 E-value=0.00016 Score=65.20 Aligned_cols=222 Identities=12% Similarity=0.074 Sum_probs=150.8
Q ss_pred hhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCc-----------CCc-ccHHHHHHHH
Q 044786 20 CTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL-----------RDF-NSWAVMIVGY 87 (340)
Q Consensus 20 ~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----------~~~-~~~~~li~~~ 87 (340)
|...|+.+.|.+-++.+++. .+|..+.++|.+.+++|-|.-.+..|.. .|. ..-....-..
T Consensus 738 yvtiG~MD~AfksI~~IkS~-------~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLA 810 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIKSD-------SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLA 810 (1416)
T ss_pred EEEeccHHHHHHHHHHHhhh-------HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHH
Confidence 56679999998888777644 7899999999999999999888888862 122 2222233334
Q ss_pred HcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcC
Q 044786 88 VDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167 (340)
Q Consensus 88 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 167 (340)
...|..++|+.+|++-+..+ .|=+.|-..|.+++|.++-+.--+..+ ..||..-...+...++
T Consensus 811 ieLgMlEeA~~lYr~ckR~D--------------LlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~D 873 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKRYD--------------LLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRD 873 (1416)
T ss_pred HHHhhHHHHHHHHHHHHHHH--------------HHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhcc
Confidence 56789999999999887652 233455567889999887654333332 2355555666667788
Q ss_pred HHHHHHHHHHcccC-----------------------ChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCChhhHHHH
Q 044786 168 LEDADFVFSQLKRH-----------------------NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224 (340)
Q Consensus 168 ~~~a~~~~~~~~~~-----------------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~l 224 (340)
.+.|++.|++...+ |...|.=-..-.-..|+.+.|+.+|..... |-++
T Consensus 874 i~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~ 944 (1416)
T KOG3617|consen 874 IEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSM 944 (1416)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhh
Confidence 88888888765432 222222222333346777888877776653 4567
Q ss_pred HHhcccCCchhchHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhh
Q 044786 225 LKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIV 281 (340)
Q Consensus 225 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 281 (340)
+...|-.|+.++ |..+-+. .-|....-.|.+.|-..|++.+|..+|.+..
T Consensus 945 VrI~C~qGk~~k-Aa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 945 VRIKCIQGKTDK-AARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred eeeEeeccCchH-HHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 777888888877 5555433 2355666678899999999999999987765
No 103
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.43 E-value=8.1e-06 Score=59.67 Aligned_cols=11 Identities=18% Similarity=0.084 Sum_probs=3.9
Q ss_pred cCchhHHHHHH
Q 044786 196 EGHFHQVFNDF 206 (340)
Q Consensus 196 ~~~~~~a~~~~ 206 (340)
.|++++|+..|
T Consensus 105 ~g~~~eAi~~~ 115 (144)
T PRK15359 105 MGEPGLAREAF 115 (144)
T ss_pred cCCHHHHHHHH
Confidence 33333333333
No 104
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.43 E-value=3e-05 Score=60.34 Aligned_cols=159 Identities=9% Similarity=0.072 Sum_probs=128.6
Q ss_pred HHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCc---CCcccHHHHHHHHHcc
Q 044786 14 TCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL---RDFNSWAVMIVGYVDV 90 (340)
Q Consensus 14 ~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~ 90 (340)
..+-..+...|+-+.+..+....... .+-|....+..+....+.|++..|...|++... +|..+|+.+.-+|-+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~--~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA--YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc--CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHc
Confidence 33445555666666666666665432 344666777799999999999999999998873 4777999999999999
Q ss_pred cChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHH
Q 044786 91 ADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170 (340)
Q Consensus 91 g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 170 (340)
|++++|..-|.+..+.. .-+....+.+.-.+.-.|+++.|..++......+.. |..+-..+.......|++++
T Consensus 148 Gr~~~Ar~ay~qAl~L~------~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~ 220 (257)
T COG5010 148 GRFDEARRAYRQALELA------PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFRE 220 (257)
T ss_pred cChhHHHHHHHHHHHhc------cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHH
Confidence 99999999999999884 456778899999999999999999999988887654 66677788889999999999
Q ss_pred HHHHHHHcccC
Q 044786 171 ADFVFSQLKRH 181 (340)
Q Consensus 171 a~~~~~~~~~~ 181 (340)
|+.+-..-..+
T Consensus 221 A~~i~~~e~~~ 231 (257)
T COG5010 221 AEDIAVQELLS 231 (257)
T ss_pred HHhhccccccc
Confidence 99987765544
No 105
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.42 E-value=0.0008 Score=57.07 Aligned_cols=295 Identities=9% Similarity=0.020 Sum_probs=200.7
Q ss_pred hccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCc--CCc-ccHHHHHHHHHcccChhHHHH
Q 044786 22 FQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL--RDF-NSWAVMIVGYVDVADYQECIT 98 (340)
Q Consensus 22 ~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~a~~ 98 (340)
..+++..|..+|+..... . .-+...|-.-+.+=.++..+..|..+|++... |-+ ..|--.+..--..|+...|.+
T Consensus 85 sq~e~~RARSv~ERALdv-d-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDV-D-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred hHHHHHHHHHHHHHHHhc-c-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHH
Confidence 467888899999998876 3 34667777888888899999999999988762 222 245555555666789999999
Q ss_pred HHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHc
Q 044786 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL 178 (340)
Q Consensus 99 ~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 178 (340)
+|++-.+- .|+...|.+.++.=.+-+.++.|..+|+..+-.. |++.+|-.-...=.+.|++..|..+|+..
T Consensus 163 iferW~~w-------~P~eqaW~sfI~fElRykeieraR~IYerfV~~H--P~v~~wikyarFE~k~g~~~~aR~VyerA 233 (677)
T KOG1915|consen 163 IFERWMEW-------EPDEQAWLSFIKFELRYKEIERARSIYERFVLVH--PKVSNWIKYARFEEKHGNVALARSVYERA 233 (677)
T ss_pred HHHHHHcC-------CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheec--ccHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 99998877 7999999999999999999999999999887653 78888888888888899999999999887
Q ss_pred ccC------ChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCC--hhhHHHHHHhcccCCchhchHHHH-------HH
Q 044786 179 KRH------NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKN--SYTFSSVLKACGGVDDDGNCGRQM-------HA 243 (340)
Q Consensus 179 ~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~t~~~ll~~~~~~~~~~~~~~~~-------~~ 243 (340)
.+. +...++++..--.++..++.|.-+|+-..++- +.+ ...|.....-=-+-|+....-..+ ++
T Consensus 234 ie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE 312 (677)
T KOG1915|consen 234 IEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYE 312 (677)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHH
Confidence 643 23345555544456777888888888877652 222 223333332222333322111111 12
Q ss_pred HHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhcC-Cc---HHHHHHHHH--------HHHHcCchHHHHHHHHH
Q 044786 244 NIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK-KN---IASWNAMLV--------GYIRNGLYVEATKFLYL 311 (340)
Q Consensus 244 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-~~---~~~~~~li~--------~~~~~~~~~~a~~~~~~ 311 (340)
...+. -+.|-.+|--.++.-...|+.+...++|++...+ |. -.-|...|- .=....+++.+.++|+.
T Consensus 313 ~~v~~-np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~ 391 (677)
T KOG1915|consen 313 KEVSK-NPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQA 391 (677)
T ss_pred HHHHh-CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 22222 2446777878888888889999999999988763 21 122333222 11256788888888888
Q ss_pred HHHcCCccchhHHHHHHHH
Q 044786 312 MKASGIQIQESLINDLRIA 330 (340)
Q Consensus 312 m~~~g~~~~~~t~~~ll~a 330 (340)
..+ =++-..+||.-+=-.
T Consensus 392 ~l~-lIPHkkFtFaKiWlm 409 (677)
T KOG1915|consen 392 CLD-LIPHKKFTFAKIWLM 409 (677)
T ss_pred HHh-hcCcccchHHHHHHH
Confidence 776 234444566655333
No 106
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.41 E-value=0.00028 Score=57.48 Aligned_cols=84 Identities=11% Similarity=0.065 Sum_probs=49.8
Q ss_pred HHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCc---CCcccHHHHHHHHHcccCh
Q 044786 17 IKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL---RDFNSWAVMIVGYVDVADY 93 (340)
Q Consensus 17 i~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 93 (340)
+.-+...+|+..|+.+++.-... +-+-...+---+..++.+.|++++|...+..+.+ ++...+-.|.-++.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~-~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNL-DREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhcc-chhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHH
Confidence 45556667788888887776644 3332223333444556677888888888776653 2344455555555555666
Q ss_pred hHHHHHHH
Q 044786 94 QECITLFA 101 (340)
Q Consensus 94 ~~a~~~~~ 101 (340)
.+|..+-.
T Consensus 108 ~eA~~~~~ 115 (557)
T KOG3785|consen 108 IEAKSIAE 115 (557)
T ss_pred HHHHHHHh
Confidence 66655543
No 107
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.40 E-value=3.5e-07 Score=47.28 Aligned_cols=31 Identities=29% Similarity=0.613 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHcCC
Q 044786 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGI 317 (340)
Q Consensus 287 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 317 (340)
++|+.+|++|++.|++++|.++|++|++.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3788999999999999999999999988875
No 108
>PLN02789 farnesyltranstransferase
Probab=98.40 E-value=0.00066 Score=56.55 Aligned_cols=221 Identities=7% Similarity=-0.045 Sum_probs=115.3
Q ss_pred HHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhcc-chhhHHHHHHHHHHcCCCCchhHHHHHHHH
Q 044786 83 MIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTM-NMELGKQVHGLLFKLGSSRNISLTGSLINF 161 (340)
Q Consensus 83 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 161 (340)
+-..+...++.++|+.+..++++.. +-+..+|+.--..+...| ++++++..++.+.+...+ +..+|+--.-.
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~ln------P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~ 115 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRLN------PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWL 115 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHC------chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHH
Confidence 3334445556666777766666652 222234444434444445 456666666666655443 33334433333
Q ss_pred HHhhcC--HHHHHHHHHHccc---CChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCChhhHHHHHHhcccC---Cc
Q 044786 162 YGKFRC--LEDADFVFSQLKR---HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV---DD 233 (340)
Q Consensus 162 ~~~~~~--~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~---~~ 233 (340)
+.+.|+ .+++..+++.+.+ +|..+|+...-++...|+++++++.+.++.+.... +...|+.....+.+. |.
T Consensus 116 l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccc
Confidence 333343 2455666655543 35566666666666777777777777777765432 233333332222222 22
Q ss_pred hh---chHHHHHHHHHHhCCCccHHHHHHHHHHHhcc----CCHHHHHHHHHHhhc-C-CcHHHHHHHHHHHHHcC----
Q 044786 234 DG---NCGRQMHANIVKIGLESDEYVQCGLVDMYGKC----RLLRDAERVFELIVD-K-KNIASWNAMLVGYIRNG---- 300 (340)
Q Consensus 234 ~~---~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----~~~~~A~~~~~~~~~-~-~~~~~~~~li~~~~~~~---- 300 (340)
.. +....+....+... +-|...|+-+...+... ++..+|.+++.+... . .+......|+..|+...
T Consensus 195 ~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~ 273 (320)
T PLN02789 195 LEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTA 273 (320)
T ss_pred ccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccch
Confidence 21 11333332333321 23566666666666552 334557777766544 2 35566677777776532
Q ss_pred --------------chHHHHHHHHHH
Q 044786 301 --------------LYVEATKFLYLM 312 (340)
Q Consensus 301 --------------~~~~a~~~~~~m 312 (340)
..++|.++++.+
T Consensus 274 ~~~~~~~~~~~~~~~~~~a~~~~~~l 299 (320)
T PLN02789 274 EFRDTVDTLAEELSDSTLAQAVCSEL 299 (320)
T ss_pred hhhhhhhccccccccHHHHHHHHHHH
Confidence 336688888877
No 109
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=0.00067 Score=62.70 Aligned_cols=285 Identities=11% Similarity=0.098 Sum_probs=153.5
Q ss_pred CCcchhHHHHHHhhhccchhhHHHHHHHHHhhcCCC--CCHHHHHHHHHHHHhcCChhHHHHHHhhcC-cCCcc-----c
Q 044786 8 ITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIK--PTLLFLNRLLLMHVSCGQLDTARQLFDEMP-LRDFN-----S 79 (340)
Q Consensus 8 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~-~~~~~-----~ 79 (340)
-|...|+.++.--. .--.+++++..+. +++ -|+.-.+..+.++...+-..+-.++++++. ++++. .
T Consensus 950 ~D~~LW~~VL~e~n-----~~rRqLiDqVv~t-al~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nL 1023 (1666)
T KOG0985|consen 950 SDPDLWAKVLNEEN-----PYRRQLIDQVVQT-ALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNL 1023 (1666)
T ss_pred cChHHHHHHHhccC-----hHHHHHHHHHHHh-cCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhh
Confidence 35666776664211 1123566666655 543 356667778888888888889999988876 33332 3
Q ss_pred HHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHH
Q 044786 80 WAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLI 159 (340)
Q Consensus 80 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 159 (340)
-|.||-...+. +..++.+..+++-.-+ .|+ +...+...+-+++|..+|+... .+....+.|+
T Consensus 1024 QnLLiLtAika-d~trVm~YI~rLdnyD------a~~------ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLi 1085 (1666)
T KOG0985|consen 1024 QNLLILTAIKA-DRTRVMEYINRLDNYD------APD------IAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLI 1085 (1666)
T ss_pred hhhHHHHHhhc-ChHHHHHHHHHhccCC------chh------HHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHH
Confidence 44555555444 3345555555554332 222 2334445555666666665431 1222222232
Q ss_pred HHHHhhcCHHHHHHHHHHcccCChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCChhhHHHHHHhcccCCchhchHH
Q 044786 160 NFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGR 239 (340)
Q Consensus 160 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~ 239 (340)
+ ..+.++.|.+.-++..+|. .|..+.++-.+.|...+|++-|-+. -|+..|..++....+.|.+++ ..
T Consensus 1086 e---~i~~ldRA~efAe~~n~p~--vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~ed-Lv 1153 (1666)
T KOG0985|consen 1086 E---NIGSLDRAYEFAERCNEPA--VWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYED-LV 1153 (1666)
T ss_pred H---HhhhHHHHHHHHHhhCChH--HHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHH-HH
Confidence 2 2345555555555544433 3566666666666666665554222 234456666666666666655 44
Q ss_pred HHHHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHh--------hc--------------CCcHHHHHHHHHHHH
Q 044786 240 QMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELI--------VD--------------KKNIASWNAMLVGYI 297 (340)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~--------~~--------------~~~~~~~~~li~~~~ 297 (340)
.++.+..+..-.|...+ .||-+|++.+++.+.++++..- -+ -.++.-|..|...+.
T Consensus 1154 ~yL~MaRkk~~E~~id~--eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV 1231 (1666)
T KOG0985|consen 1154 KYLLMARKKVREPYIDS--ELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLV 1231 (1666)
T ss_pred HHHHHHHHhhcCccchH--HHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHH
Confidence 44444444444444433 4555666666655554443210 00 013345666777777
Q ss_pred HcCchHHHHHHHHHHHHcCCccchhHHHHHHHHhhhcCc
Q 044786 298 RNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336 (340)
Q Consensus 298 ~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~a~~~~g~ 336 (340)
..|++..|...-++. -+..||.-+--||...+.
T Consensus 1232 ~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~E 1264 (1666)
T KOG0985|consen 1232 YLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEE 1264 (1666)
T ss_pred HHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhh
Confidence 777777776655443 356678877777776543
No 110
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.39 E-value=1.8e-05 Score=57.89 Aligned_cols=91 Identities=8% Similarity=0.036 Sum_probs=48.5
Q ss_pred HHHHHHHhcCChhHHHHHHhhcCcC---CcccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHh
Q 044786 51 RLLLMHVSCGQLDTARQLFDEMPLR---DFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKAC 127 (340)
Q Consensus 51 ~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~ 127 (340)
.+...+...|++++|...|+..... +...|..+...+...|++++|...|++..... +.+...+..+..++
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~------p~~~~a~~~lg~~l 102 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD------ASHPEPVYQTGVCL 102 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC------CCCcHHHHHHHHHH
Confidence 3444555555555555555554422 33345555555555555555555555555543 34445555555555
Q ss_pred hhccchhhHHHHHHHHHHcC
Q 044786 128 VCTMNMELGKQVHGLLFKLG 147 (340)
Q Consensus 128 ~~~~~~~~a~~~~~~~~~~~ 147 (340)
.+.|++++|...|+...+..
T Consensus 103 ~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 103 KMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred HHcCCHHHHHHHHHHHHHhC
Confidence 55555555555555555443
No 111
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.36 E-value=0.0014 Score=57.14 Aligned_cols=109 Identities=13% Similarity=0.049 Sum_probs=68.0
Q ss_pred HHHhcccCCchhchHHHHHH--------HHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhc-----CCcHH---
Q 044786 224 VLKACGGVDDDGNCGRQMHA--------NIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD-----KKNIA--- 287 (340)
Q Consensus 224 ll~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-----~~~~~--- 287 (340)
.+......|++.. |..++. .+.+.+.. +.+...++..|.+.++-+.|..++.+... .+...
T Consensus 382 ~aQl~is~gn~~~-A~~il~~~~~~~~ss~~~~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~ 458 (652)
T KOG2376|consen 382 RAQLKISQGNPEV-ALEILSLFLESWKSSILEAKHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALL 458 (652)
T ss_pred HHHHHHhcCCHHH-HHHHHHHHhhhhhhhhhhhccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHH
Confidence 3344456666644 555555 33333333 33445566777777776667666665543 12112
Q ss_pred -HHHHHHHHHHHcCchHHHHHHHHHHHHcCCccchhHHHHHHHHhhhcCc
Q 044786 288 -SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336 (340)
Q Consensus 288 -~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~a~~~~g~ 336 (340)
++.-+...-.+.|+-++|..+++++.... .+|..+...++.+++....
T Consensus 459 ~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~d~ 507 (652)
T KOG2376|consen 459 SLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARLDP 507 (652)
T ss_pred hHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhcCH
Confidence 23333333457799999999999998753 6788999999999988653
No 112
>PLN02789 farnesyltranstransferase
Probab=98.31 E-value=0.00072 Score=56.35 Aligned_cols=187 Identities=8% Similarity=-0.087 Sum_probs=110.9
Q ss_pred HHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHhhcCcC---CcccHHHHHHHHHccc
Q 044786 16 LIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCG-QLDTARQLFDEMPLR---DFNSWAVMIVGYVDVA 91 (340)
Q Consensus 16 li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g 91 (340)
+-..+...+..++|+.+.+.+... -+-+..+|+.--.++...| ++++++..++.+.+. +..+|+.--..+.+.|
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~ 120 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLG 120 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcC
Confidence 334445566788888888888765 2223445555555555556 568888888777633 3345665544444555
Q ss_pred Ch--hHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhh---c
Q 044786 92 DY--QECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF---R 166 (340)
Q Consensus 92 ~~--~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~ 166 (340)
+. ++++.+++++.+.+ +-+.++|+.-.-++.+.|+++++++.++.+.+.++. +...|+.....+.+. |
T Consensus 121 ~~~~~~el~~~~kal~~d------pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~ 193 (320)
T PLN02789 121 PDAANKELEFTRKILSLD------AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLG 193 (320)
T ss_pred chhhHHHHHHHHHHHHhC------cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccc
Confidence 42 56777777777774 556677777777777778888888888888877655 444555444444333 2
Q ss_pred CH----HHHHHHHHHcc--c-CChhhHHHHHHHHhcc----CchhHHHHHHHHHhh
Q 044786 167 CL----EDADFVFSQLK--R-HNTVVWTAKIVNNCRE----GHFHQVFNDFKEMGR 211 (340)
Q Consensus 167 ~~----~~a~~~~~~~~--~-~~~~~~~~li~~~~~~----~~~~~a~~~~~~m~~ 211 (340)
.. +++.+...+.. . .|..+|+-+...+... ++..+|.+.+.+..+
T Consensus 194 ~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 194 GLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred cccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 22 23444443333 2 2555666666666552 233445555555444
No 113
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.30 E-value=0.00019 Score=65.99 Aligned_cols=127 Identities=14% Similarity=0.098 Sum_probs=71.0
Q ss_pred cccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccch-HHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHH
Q 044786 77 FNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLT 155 (340)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 155 (340)
+..+-.|.....+.|.+++|+.+++...+. .|+ ......+...+.+.+++++|....++..+.... +....
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~-------~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~ 157 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQR-------FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREI 157 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhh-------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHH
Confidence 444555555555666666666666666655 233 334555555566666666666666666555433 44445
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHcccCC---hhhHHHHHHHHhccCchhHHHHHHHHHhh
Q 044786 156 GSLINFYGKFRCLEDADFVFSQLKRHN---TVVWTAKIVNNCREGHFHQVFNDFKEMGR 211 (340)
Q Consensus 156 ~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 211 (340)
..+..++.+.|++++|..+|++...++ ..++..+-.++-..|+.++|...|++..+
T Consensus 158 ~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 158 LLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555666666666666666655332 34455555555556666666666666544
No 114
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.29 E-value=5.8e-05 Score=69.22 Aligned_cols=131 Identities=11% Similarity=-0.071 Sum_probs=99.4
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCc--C-CcccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHH
Q 044786 42 IKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL--R-DFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAW 118 (340)
Q Consensus 42 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ 118 (340)
+..+...+-.|.....+.|+.++|.++++...+ | +......+...+.+.+++++|+..+++..... +-+..
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~------p~~~~ 155 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG------SSSAR 155 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC------CCCHH
Confidence 445577777788888888888888888888773 3 33356677788888888888888888888773 34455
Q ss_pred HHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHcc
Q 044786 119 IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179 (340)
Q Consensus 119 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 179 (340)
....+..++.+.|++++|..+|+++...+. -+..++..+...+-+.|+.++|...|+...
T Consensus 156 ~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~ 215 (694)
T PRK15179 156 EILLEAKSWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGL 215 (694)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 666777778888888888888888887432 246777788888888888888888888764
No 115
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.29 E-value=9.8e-07 Score=45.55 Aligned_cols=31 Identities=29% Similarity=0.607 Sum_probs=25.7
Q ss_pred hhHHHHHHHHhccCchhHHHHHHHHHhhccc
Q 044786 184 VVWTAKIVNNCREGHFHQVFNDFKEMGRERI 214 (340)
Q Consensus 184 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 214 (340)
++||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888887764
No 116
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.29 E-value=0.00017 Score=62.27 Aligned_cols=216 Identities=13% Similarity=0.041 Sum_probs=161.3
Q ss_pred HHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhc
Q 044786 87 YVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166 (340)
Q Consensus 87 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 166 (340)
+.+.|+..+|.-.|+.....+ +-+...|.-|....+..++-..|+..+++.++.... +....-.|.-.|...|
T Consensus 295 lm~nG~L~~A~LafEAAVkqd------P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg 367 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD------PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEG 367 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC------hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhh
Confidence 567889999999999998885 567779999999999999999999999988888654 6777788888899999
Q ss_pred CHHHHHHHHHHcccCC-hhhHHHH-------H--HHHhccCchhHHHHHHHHHhh-cccCCChhhHHHHHHhcccCCchh
Q 044786 167 CLEDADFVFSQLKRHN-TVVWTAK-------I--VNNCREGHFHQVFNDFKEMGR-ERIKKNSYTFSSVLKACGGVDDDG 235 (340)
Q Consensus 167 ~~~~a~~~~~~~~~~~-~~~~~~l-------i--~~~~~~~~~~~a~~~~~~m~~-~~~~p~~~t~~~ll~~~~~~~~~~ 235 (340)
.-..|...++.-.... ...|... . ..+.....+....++|-++.. .+..+|......|--.|--.|.++
T Consensus 368 ~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 368 LQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred hHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 9999999888753110 0000000 0 122233334555666666643 454466667777777778888888
Q ss_pred chHHHHHHHHHHhCCCc-cHHHHHHHHHHHhccCCHHHHHHHHHHhhc-CC-cHHHHHHHHHHHHHcCchHHHHHHHHHH
Q 044786 236 NCGRQMHANIVKIGLES-DEYVQCGLVDMYGKCRLLRDAERVFELIVD-KK-NIASWNAMLVGYIRNGLYVEATKFLYLM 312 (340)
Q Consensus 236 ~~~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m 312 (340)
+ +...|+..... +| |..+||-|--.++...+.++|..-|++..+ +| =+.++.-|..+|...|.+++|.+.|-+.
T Consensus 448 r-aiDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 448 R-AVDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred H-HHHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 8 77777766653 45 788999999999999999999999999887 45 4556667888999999999999987664
No 117
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.29 E-value=7.5e-05 Score=54.78 Aligned_cols=125 Identities=8% Similarity=0.030 Sum_probs=64.1
Q ss_pred HHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCch--hHHHH
Q 044786 80 WAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNI--SLTGS 157 (340)
Q Consensus 80 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ 157 (340)
|..++..+ ..++...+...++.+.....+. .......-.+...+...|++++|...|+.+......|+. .....
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s---~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSS---PYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR 90 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCC---hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 33344444 2555566666666666552111 111223333445555666666666666666655422221 12333
Q ss_pred HHHHHHhhcCHHHHHHHHHHcccC--ChhhHHHHHHHHhccCchhHHHHHHHH
Q 044786 158 LINFYGKFRCLEDADFVFSQLKRH--NTVVWTAKIVNNCREGHFHQVFNDFKE 208 (340)
Q Consensus 158 l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~ 208 (340)
+...+...|++++|...++....+ ....+......|.+.|++++|...|+.
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 455566666666666666554332 223344555666666666666666654
No 118
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.28 E-value=5.3e-05 Score=58.60 Aligned_cols=145 Identities=8% Similarity=0.012 Sum_probs=105.5
Q ss_pred HHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcC---cCCcccHHHHHHHHHcccC
Q 044786 16 LIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMP---LRDFNSWAVMIVGYVDVAD 92 (340)
Q Consensus 16 li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~ 92 (340)
-+..|...|+++.+....+.+... . . .+...++.+++...++... ..|...|..+...|...|+
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~~-----~-~-------~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLADP-----L-H-------QFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhCc-----c-c-------cccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
Confidence 345577888888875554322211 1 0 1123566677777776655 3466678889999999999
Q ss_pred hhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHh-hhccc--hhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHH
Q 044786 93 YQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKAC-VCTMN--MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169 (340)
Q Consensus 93 ~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 169 (340)
+++|...|++..+.. +-+...+..+..++ ...|+ .++|.+++++..+.+.. +...+..+...+.+.|+++
T Consensus 89 ~~~A~~a~~~Al~l~------P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~ 161 (198)
T PRK10370 89 YDNALLAYRQALQLR------GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYA 161 (198)
T ss_pred HHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHH
Confidence 999999999998884 44666777777764 56666 58999999999988765 6778888888899999999
Q ss_pred HHHHHHHHccc
Q 044786 170 DADFVFSQLKR 180 (340)
Q Consensus 170 ~a~~~~~~~~~ 180 (340)
+|...|+++.+
T Consensus 162 ~Ai~~~~~aL~ 172 (198)
T PRK10370 162 QAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHHHh
Confidence 99999998753
No 119
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.28 E-value=0.0009 Score=52.46 Aligned_cols=150 Identities=13% Similarity=0.082 Sum_probs=78.6
Q ss_pred HHHHHHHhhcCHHHHHHHHHHcccCChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCChhhHHHHHHhcc----cCC
Q 044786 157 SLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG----GVD 232 (340)
Q Consensus 157 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~----~~~ 232 (340)
.-...|++.|++++|.+..+....-.....+ +..+.+..+++-|...+++|.+- -+..|.+-+..++. ..+
T Consensus 113 ~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~gge 187 (299)
T KOG3081|consen 113 LAAIIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGE 187 (299)
T ss_pred HhhHHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccch
Confidence 3344566666666666666653222222222 23345566666666666666652 23444444444432 222
Q ss_pred chhchHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhcC--CcHHHHHHHHHHHHHcCchHH-HHHHH
Q 044786 233 DDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK--KNIASWNAMLVGYIRNGLYVE-ATKFL 309 (340)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~-a~~~~ 309 (340)
...+ +..+++.+.+. .+|++.+.+...-++...|++++|+.++++...+ .++.+...+|..-...|...+ ..+.+
T Consensus 188 k~qd-AfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l 265 (299)
T KOG3081|consen 188 KIQD-AFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNL 265 (299)
T ss_pred hhhh-HHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHH
Confidence 2323 55556655542 4666666666666666777777777777666653 344555444444444444433 23344
Q ss_pred HHHH
Q 044786 310 YLMK 313 (340)
Q Consensus 310 ~~m~ 313 (340)
.+++
T Consensus 266 ~QLk 269 (299)
T KOG3081|consen 266 SQLK 269 (299)
T ss_pred HHHH
Confidence 4443
No 120
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.27 E-value=0.0021 Score=55.48 Aligned_cols=65 Identities=14% Similarity=0.176 Sum_probs=55.0
Q ss_pred CCCCcchhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcC
Q 044786 6 LPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMP 73 (340)
Q Consensus 6 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 73 (340)
-|.|..+|+.||+-+... ..+++.+.++++... ++-+...|..-|..-.+.++++.++.+|.+-.
T Consensus 16 nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~--FP~s~r~W~~yi~~El~skdfe~VEkLF~RCL 80 (656)
T KOG1914|consen 16 NPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV--FPSSPRAWKLYIERELASKDFESVEKLFSRCL 80 (656)
T ss_pred CCccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 366889999999988666 999999999999865 66677888899999999999999999888744
No 121
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.21 E-value=0.0012 Score=64.13 Aligned_cols=261 Identities=9% Similarity=-0.042 Sum_probs=158.9
Q ss_pred HHHHHHHhcCChhHHHHHHhhcCc----CC---c-c----cHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccc--h
Q 044786 51 RLLLMHVSCGQLDTARQLFDEMPL----RD---F-N----SWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVF--P 116 (340)
Q Consensus 51 ~li~~~~~~~~~~~a~~~~~~~~~----~~---~-~----~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~--~ 116 (340)
.....+...|++++|...++.... .+ . . ....+...+...|++++|...+++..... ... .+ .
T Consensus 414 ~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-~~~--~~~~~ 490 (903)
T PRK04841 414 LQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAEL-PLT--WYYSR 490 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-CCc--cHHHH
Confidence 334455677899998888876531 11 1 1 11122344567899999999999887641 110 11 1
Q ss_pred HHHHHHHHHHhhhccchhhHHHHHHHHHHcCC-----CCchhHHHHHHHHHHhhcCHHHHHHHHHHcccC----------
Q 044786 117 AWIIVCVLKACVCTMNMELGKQVHGLLFKLGS-----SRNISLTGSLINFYGKFRCLEDADFVFSQLKRH---------- 181 (340)
Q Consensus 117 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------- 181 (340)
....+.+...+...|++++|...+++.....- .....++..+...+...|++++|...+++....
T Consensus 491 ~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~ 570 (903)
T PRK04841 491 IVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLP 570 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccccc
Confidence 23455666777889999999999887764321 111234556677788899999999988775421
Q ss_pred -ChhhHHHHHHHHhccCchhHHHHHHHHHhhc--ccCCC--hhhHHHHHHhcccCCchhchHHHHHHHHHHh----CCCc
Q 044786 182 -NTVVWTAKIVNNCREGHFHQVFNDFKEMGRE--RIKKN--SYTFSSVLKACGGVDDDGNCGRQMHANIVKI----GLES 252 (340)
Q Consensus 182 -~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~p~--~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 252 (340)
....+..+...+...|++++|...+++.... ...+. ...+..+...+...|+.++ +...+...... +...
T Consensus 571 ~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~-A~~~l~~a~~~~~~~~~~~ 649 (903)
T PRK04841 571 MHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDN-ARRYLNRLENLLGNGRYHS 649 (903)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHhcccccH
Confidence 1123444556677789999999999887542 11122 2334445556677888866 55554444322 1111
Q ss_pred cHHH--HHHHHHHHhccCCHHHHHHHHHHhhcC--CcH----HHHHHHHHHHHHcCchHHHHHHHHHHHHc
Q 044786 253 DEYV--QCGLVDMYGKCRLLRDAERVFELIVDK--KNI----ASWNAMLVGYIRNGLYVEATKFLYLMKAS 315 (340)
Q Consensus 253 ~~~~--~~~li~~~~~~~~~~~A~~~~~~~~~~--~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 315 (340)
.... -...+..+...|+.+.|.+.+...... ... ..+..+..++...|++++|...+++....
T Consensus 650 ~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 650 DWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNEN 720 (903)
T ss_pred hHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1101 011224455688999999998776542 111 11345667788999999999999987654
No 122
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.18 E-value=7.3e-05 Score=54.09 Aligned_cols=102 Identities=8% Similarity=-0.090 Sum_probs=67.7
Q ss_pred HHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHcccC---ChhhHHHHHHHH
Q 044786 117 AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH---NTVVWTAKIVNN 193 (340)
Q Consensus 117 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~ 193 (340)
......+...+...|++++|.+.++.+.+.+.. +...+..+...+.+.|++++|...++...+. +...+..+...+
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 95 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 344556666666777777777777777665532 5566667777777777777777777765422 445566667777
Q ss_pred hccCchhHHHHHHHHHhhcccCCChhhH
Q 044786 194 CREGHFHQVFNDFKEMGRERIKKNSYTF 221 (340)
Q Consensus 194 ~~~~~~~~a~~~~~~m~~~~~~p~~~t~ 221 (340)
...|++++|...|++..+. .|+...+
T Consensus 96 ~~~g~~~~A~~~~~~al~~--~p~~~~~ 121 (135)
T TIGR02552 96 LALGEPESALKALDLAIEI--CGENPEY 121 (135)
T ss_pred HHcCCHHHHHHHHHHHHHh--ccccchH
Confidence 7788888888888777764 3544443
No 123
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.18 E-value=0.0004 Score=62.02 Aligned_cols=78 Identities=17% Similarity=0.158 Sum_probs=34.9
Q ss_pred HHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHcccC--ChhhHHHHHHHHhccC
Q 044786 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH--NTVVWTAKIVNNCREG 197 (340)
Q Consensus 120 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~li~~~~~~~ 197 (340)
|..+...|+..|+++.|.++|-+. ..++-.|.+|.+.|+|..|.++-.+...| ..+.|-+-..-+-.+|
T Consensus 768 y~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehg 838 (1636)
T KOG3616|consen 768 YGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHG 838 (1636)
T ss_pred chHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhc
Confidence 444445555555555555554321 12333455555555555555555554433 2222333333333444
Q ss_pred chhHHHHHH
Q 044786 198 HFHQVFNDF 206 (340)
Q Consensus 198 ~~~~a~~~~ 206 (340)
++.+|.++|
T Consensus 839 kf~eaeqly 847 (1636)
T KOG3616|consen 839 KFAEAEQLY 847 (1636)
T ss_pred chhhhhhee
Confidence 444444433
No 124
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.17 E-value=0.00069 Score=57.62 Aligned_cols=133 Identities=10% Similarity=0.004 Sum_probs=69.8
Q ss_pred hcCChhHHHHHHhhcC--cC-CcccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccch-HHHHHHHHHHhhhccch
Q 044786 58 SCGQLDTARQLFDEMP--LR-DFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTMNM 133 (340)
Q Consensus 58 ~~~~~~~a~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~ 133 (340)
..|+.++|+..++.+. .| |+.-+......+.+.++.++|.+.++++... .|+ ....-.+..++.+.|++
T Consensus 318 ~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l-------~P~~~~l~~~~a~all~~g~~ 390 (484)
T COG4783 318 LAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL-------DPNSPLLQLNLAQALLKGGKP 390 (484)
T ss_pred HhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-------CCCccHHHHHHHHHHHhcCCh
Confidence 4455555555555544 22 3333444445555556666666666665555 233 33444455555555666
Q ss_pred hhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHcccCChhhHHHHHHHHhccCchhHHHHHHHHHhhc
Q 044786 134 ELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRE 212 (340)
Q Consensus 134 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 212 (340)
.+|..+++........ |+..|..|..+|...|+..++..-. -..|...|++++|+..+....+.
T Consensus 391 ~eai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~A~--------------AE~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 391 QEAIRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALLAR--------------AEGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHHHH--------------HHHHHhCCCHHHHHHHHHHHHHh
Confidence 6665555555544322 5555666666666666555554432 23445556666666655555443
No 125
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.13 E-value=0.0023 Score=50.25 Aligned_cols=261 Identities=7% Similarity=0.021 Sum_probs=127.1
Q ss_pred CCCCCCCcchhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCcCCcccHHH
Q 044786 3 NLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAV 82 (340)
Q Consensus 3 ~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 82 (340)
..+..|+...|+ ++.+.-.|++..++..-+..... . -+...-.-+-++|.-.|.......-...-..+.......
T Consensus 3 ~~~~g~~d~LF~--iRn~fY~Gnyq~~ine~~~~~~~-~--~~~e~d~y~~raylAlg~~~~~~~eI~~~~~~~lqAvr~ 77 (299)
T KOG3081|consen 3 SMEAGPEDELFN--IRNYFYLGNYQQCINEAEKFSSS-K--TDVELDVYMYRAYLALGQYQIVISEIKEGKATPLQAVRL 77 (299)
T ss_pred ccccCcchhHHH--HHHHHHhhHHHHHHHHHHhhccc-c--chhHHHHHHHHHHHHcccccccccccccccCChHHHHHH
Confidence 334445434443 45566678888877766655543 1 233333334455555555443332211111111111222
Q ss_pred HHHHHHcccChhHH-HHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHH
Q 044786 83 MIVGYVDVADYQEC-ITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINF 161 (340)
Q Consensus 83 li~~~~~~g~~~~a-~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 161 (340)
+...+..-++-++- .++.+.+.... . ..+......-...|...+++++|++..... -+......=+..
T Consensus 78 ~a~~~~~e~~~~~~~~~l~E~~a~~~--~---~sn~i~~l~aa~i~~~~~~~deAl~~~~~~------~~lE~~Al~VqI 146 (299)
T KOG3081|consen 78 LAEYLELESNKKSILASLYELVADST--D---GSNLIDLLLAAIIYMHDGDFDEALKALHLG------ENLEAAALNVQI 146 (299)
T ss_pred HHHHhhCcchhHHHHHHHHHHHHhhc--c---chhHHHHHHhhHHhhcCCChHHHHHHHhcc------chHHHHHHHHHH
Confidence 22222222222222 22333333321 1 122222333345566677777777665541 122233333455
Q ss_pred HHhhcCHHHHHHHHHHcccCC-hhhHHHHHHHHhc----cCchhHHHHHHHHHhhcccCCChhhHHHHHHhcccCCchhc
Q 044786 162 YGKFRCLEDADFVFSQLKRHN-TVVWTAKIVNNCR----EGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGN 236 (340)
Q Consensus 162 ~~~~~~~~~a~~~~~~~~~~~-~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~ 236 (340)
+.+..+++-|++.+++|.+-| -.|.+.|..++.+ .+...+|.-+|++|.++ ..|+..+.+-...++...+++++
T Consensus 147 ~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~ee 225 (299)
T KOG3081|consen 147 LLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEE 225 (299)
T ss_pred HHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHH
Confidence 666677777777777776653 3344444444443 45577777777777664 45667777777777777777755
Q ss_pred hHHHHHHHHHHhCCCccHHHHHHHHHHHhccCC-HHHHHHHHHHhhc
Q 044786 237 CGRQMHANIVKIGLESDEYVQCGLVDMYGKCRL-LRDAERVFELIVD 282 (340)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~A~~~~~~~~~ 282 (340)
|+.+++.......+ ++.+...+|-.-...|. .+...+.+..++.
T Consensus 226 -Ae~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 226 -AESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred -HHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 66666665554322 33333333333333333 3344455555543
No 126
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.12 E-value=0.00024 Score=60.31 Aligned_cols=136 Identities=10% Similarity=-0.030 Sum_probs=111.9
Q ss_pred hhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCc--CC-cccHHHHHHHHHcccChhHH
Q 044786 20 CTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL--RD-FNSWAVMIVGYVDVADYQEC 96 (340)
Q Consensus 20 ~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~a 96 (340)
....|+++.|+..++.+... .+-|+.........+.+.++.++|.+.++.+.. |+ ...+-.+..++.+.|++.+|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHH
Confidence 34678999999999998865 555667777778999999999999999999984 43 33566678899999999999
Q ss_pred HHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHH
Q 044786 97 ITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFS 176 (340)
Q Consensus 97 ~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 176 (340)
+++++...... +-|...|..|..+|...|+..++..-.. +.|...|+++.|...+.
T Consensus 394 i~~L~~~~~~~------p~dp~~w~~LAqay~~~g~~~~a~~A~A------------------E~~~~~G~~~~A~~~l~ 449 (484)
T COG4783 394 IRILNRYLFND------PEDPNGWDLLAQAYAELGNRAEALLARA------------------EGYALAGRLEQAIIFLM 449 (484)
T ss_pred HHHHHHHhhcC------CCCchHHHHHHHHHHHhCchHHHHHHHH------------------HHHHhCCCHHHHHHHHH
Confidence 99999998874 6788899999999999999888876443 45667789999988887
Q ss_pred HcccC
Q 044786 177 QLKRH 181 (340)
Q Consensus 177 ~~~~~ 181 (340)
...+.
T Consensus 450 ~A~~~ 454 (484)
T COG4783 450 RASQQ 454 (484)
T ss_pred HHHHh
Confidence 76644
No 127
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.11 E-value=5.9e-05 Score=54.57 Aligned_cols=95 Identities=14% Similarity=0.095 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHhhcCc---CCcccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHH
Q 044786 47 LFLNRLLLMHVSCGQLDTARQLFDEMPL---RDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCV 123 (340)
Q Consensus 47 ~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~l 123 (340)
.....+...+...|++++|.+.|+.... .+...|..+...+.+.|++++|...+++....+ +.+..++..+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------p~~~~~~~~l 91 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD------PDDPRPYFHA 91 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------CCChHHHHHH
Confidence 3344444555556666666666655542 233445555566666666666666666655542 3344555555
Q ss_pred HHHhhhccchhhHHHHHHHHHHcC
Q 044786 124 LKACVCTMNMELGKQVHGLLFKLG 147 (340)
Q Consensus 124 l~~~~~~~~~~~a~~~~~~~~~~~ 147 (340)
...+...|+++.|.+.++...+..
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhc
Confidence 566666666666666666666554
No 128
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.09 E-value=0.0073 Score=54.46 Aligned_cols=173 Identities=10% Similarity=-0.058 Sum_probs=103.0
Q ss_pred CCCCCCcchhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCcCC--c--cc
Q 044786 4 LCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRD--F--NS 79 (340)
Q Consensus 4 ~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~--~~ 79 (340)
..+..++..|..+.-+....|++..+-+.|++.... .--....|+.+-..+.-.|.-..|..+.+.-..+. + .+
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~--~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s 394 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF--SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDIS 394 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh--hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcch
Confidence 345678888888888999999999999999988764 33466788888888888888888888887655322 2 21
Q ss_pred -HHHHHHHHH-cccChhHHHHHHHHHHHhhcCC-ccc-------------------------------------------
Q 044786 80 -WAVMIVGYV-DVADYQECITLFAEMMKRKKGH-MLL------------------------------------------- 113 (340)
Q Consensus 80 -~~~li~~~~-~~g~~~~a~~~~~~m~~~~~~~-~~~------------------------------------------- 113 (340)
+-..-..|. +.+..++++..-.+......+. ..+
T Consensus 395 ~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d 474 (799)
T KOG4162|consen 395 VLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD 474 (799)
T ss_pred HHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC
Confidence 111112222 2244444444444433310000 000
Q ss_pred cchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHc
Q 044786 114 VFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL 178 (340)
Q Consensus 114 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 178 (340)
+.|..+...+---++..++++.|.+..++..+.+...+...|..|.-.+...+++.+|+.+.+..
T Consensus 475 ~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~a 539 (799)
T KOG4162|consen 475 PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAA 539 (799)
T ss_pred CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 11122222222334455667777777777777655556666766666677777777777766554
No 129
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.08 E-value=0.0044 Score=57.64 Aligned_cols=230 Identities=13% Similarity=0.104 Sum_probs=120.8
Q ss_pred HHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCcCCcccHHHHHHHHHcccChhH
Q 044786 16 LIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQE 95 (340)
Q Consensus 16 li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 95 (340)
+...+...+-+++|..+|+... .+....+.||. .-+.+|.|.+.-++..+| ..|.-+..+-.+.|...+
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf~------~n~~A~~VLie---~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~d 1122 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFD------MNVSAIQVLIE---NIGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKD 1122 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHhc------ccHHHHHHHHH---HhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHH
Confidence 3444555566666666665432 23333333332 234455555555544433 345555555555555555
Q ss_pred HHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHH
Q 044786 96 CITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVF 175 (340)
Q Consensus 96 a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 175 (340)
|++-|-+ .-|...|..++..+.+.|.+++..+++...++..-.|.+. +.|+-+|.+.+++.+.++..
T Consensus 1123 AieSyik-----------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1123 AIESYIK-----------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI 1189 (1666)
T ss_pred HHHHHHh-----------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh
Confidence 5554433 1234445556666666666666655555555544444332 24555555555555544432
Q ss_pred HHcc-----------------------cCChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCChhhHHHHHHhcccCC
Q 044786 176 SQLK-----------------------RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVD 232 (340)
Q Consensus 176 ~~~~-----------------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~ 232 (340)
..-. -.++.-|..+...+...|.+..|.+--++. -+..||..+-.+|...+
T Consensus 1190 ~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~ 1263 (1666)
T KOG0985|consen 1190 AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKE 1263 (1666)
T ss_pred cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchh
Confidence 2100 013444666666677777777776554433 24567777777776655
Q ss_pred chhchHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhh
Q 044786 233 DDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIV 281 (340)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 281 (340)
.+ +.| .+-..++-....-..-|+.-|-..|-+++...+++...
T Consensus 1264 EF-rlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1264 EF-RLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred hh-hHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh
Confidence 54 211 12222333344555667777777777777777766543
No 130
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.07 E-value=0.00015 Score=61.73 Aligned_cols=126 Identities=17% Similarity=0.170 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHhhcCcCCcccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHH
Q 044786 47 LFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKA 126 (340)
Q Consensus 47 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~ 126 (340)
.....|+..+...++++.|.++|+++.+.++.....+++.+...++-.+|.+++++..... +-+...+..-...
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~------p~d~~LL~~Qa~f 243 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN------PQDSELLNLQAEF 243 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC------CCCHHHHHHHHHH
Confidence 3444556666677888888888888888887777788888888888888888888888763 4466677777777
Q ss_pred hhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHcc
Q 044786 127 CVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179 (340)
Q Consensus 127 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 179 (340)
+.+.++++.|.++.+++.+..+. +-.+|..|..+|.+.|+++.|+..++.++
T Consensus 244 Ll~k~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHhcCCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 88888888888888888877533 45588888888888899888888888776
No 131
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.05 E-value=0.0044 Score=50.61 Aligned_cols=285 Identities=12% Similarity=0.075 Sum_probs=149.6
Q ss_pred hccchhhHHHHHHHHHhhcCCCCCHHHHHHHH---HHHHhcCChhHHHHHHhhcCcCCcccHHHHH---HHHHcccChhH
Q 044786 22 FQKDSAGAFELLNHIRKRVNIKPTLLFLNRLL---LMHVSCGQLDTARQLFDEMPLRDFNSWAVMI---VGYVDVADYQE 95 (340)
Q Consensus 22 ~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~ 95 (340)
..|++..|+.-|.....- |+..|.++. ..|...|+-..|+.=+.++.+.-+..+.+-+ ..+.+.|.+++
T Consensus 50 a~~Q~sDALt~yHaAve~-----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~ 124 (504)
T KOG0624|consen 50 ARGQLSDALTHYHAAVEG-----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQ 124 (504)
T ss_pred HhhhHHHHHHHHHHHHcC-----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHH
Confidence 344444444444444322 333333333 3455556555555555555432222222222 34567777777
Q ss_pred HHHHHHHHHHhhcCCcc-------ccch--HHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhc
Q 044786 96 CITLFAEMMKRKKGHML-------LVFP--AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166 (340)
Q Consensus 96 a~~~~~~m~~~~~~~~~-------~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 166 (340)
|..-|+..++....-.. +.+. .......+..+...|+...|+....++++.. ..|...|..-..+|...|
T Consensus 125 A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~ 203 (504)
T KOG0624|consen 125 AEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEG 203 (504)
T ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcC
Confidence 77777777766310000 0001 1122334455556677777777777776654 336666777777777778
Q ss_pred CHHHHHHHHHHc---ccCChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCChhh----HHHH---HHh------ccc
Q 044786 167 CLEDADFVFSQL---KRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYT----FSSV---LKA------CGG 230 (340)
Q Consensus 167 ~~~~a~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t----~~~l---l~~------~~~ 230 (340)
++.+|..=++.. ...++.++--+-..+...|+.+.++..+++-.+ +.||... |..+ ... ...
T Consensus 204 e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie 281 (504)
T KOG0624|consen 204 EPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIE 281 (504)
T ss_pred cHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777776655543 334555555556666677777777777776665 3455422 2111 111 112
Q ss_pred CCchhchHHHHHHHHHHhCCCccHH---HHHHHHHHHhccCCHHHHHHHHHHhhc-CC-cHHHHHHHHHHHHHcCchHHH
Q 044786 231 VDDDGNCGRQMHANIVKIGLESDEY---VQCGLVDMYGKCRLLRDAERVFELIVD-KK-NIASWNAMLVGYIRNGLYVEA 305 (340)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~a 305 (340)
.+++.+ +..-.+...+........ .+..+-.+|...+++.+|.+...+... .| |+.++.--..+|.-...++.|
T Consensus 282 ~~~~t~-cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~A 360 (504)
T KOG0624|consen 282 EKHWTE-CLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDA 360 (504)
T ss_pred hhhHHH-HHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHH
Confidence 233322 222222222222111122 233344455566777788877777765 23 466766666777777777777
Q ss_pred HHHHHHHHHc
Q 044786 306 TKFLYLMKAS 315 (340)
Q Consensus 306 ~~~~~~m~~~ 315 (340)
+.-|+...+.
T Consensus 361 I~dye~A~e~ 370 (504)
T KOG0624|consen 361 IHDYEKALEL 370 (504)
T ss_pred HHHHHHHHhc
Confidence 7777766544
No 132
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.04 E-value=0.00015 Score=53.23 Aligned_cols=122 Identities=9% Similarity=0.038 Sum_probs=80.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHhhcCcCCccc-HHH-----HHHHHHcccChhHHHHHHHHHHHhhcCCccccch--HHH
Q 044786 48 FLNRLLLMHVSCGQLDTARQLFDEMPLRDFNS-WAV-----MIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP--AWI 119 (340)
Q Consensus 48 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~-----li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~--~~~ 119 (340)
.|..++..+ ..++...+.+.++.+......+ |.. +...+...|++++|...|+...... . .|+ ...
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~--~---d~~l~~~a 87 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA--P---DPELKPLA 87 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--C---CHHHHHHH
Confidence 344444444 4677777777777777443332 332 3356677888888888888888762 1 121 234
Q ss_pred HHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHH
Q 044786 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQ 177 (340)
Q Consensus 120 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 177 (340)
...+...+...|++++|...++...... .....+....+.|.+.|++++|...|+.
T Consensus 88 ~l~LA~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 88 RLRLARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4556777788888888888886643333 2344666778888889999999888875
No 133
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.03 E-value=0.0078 Score=52.65 Aligned_cols=188 Identities=7% Similarity=-0.060 Sum_probs=124.9
Q ss_pred hHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCcCCcccHHH--HHHHHH--
Q 044786 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAV--MIVGYV-- 88 (340)
Q Consensus 13 ~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--li~~~~-- 88 (340)
+-+=++-+...+++++|.+....+... + +.+...+..=+-+..+.+++++|+.+.+.-.... +++. +=.+||
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~-~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~--~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSI-V-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL--VINSFFFEKAYCEY 90 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhc-C-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh--hcchhhHHHHHHHH
Confidence 344456677888999999999999976 3 5566677777777888899999997665543211 2222 234444
Q ss_pred cccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCC-------------------
Q 044786 89 DVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSS------------------- 149 (340)
Q Consensus 89 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~------------------- 149 (340)
+.+..++|+..++-.- +.+..+...=...+.+.|++++|..+|+++.+.+..
T Consensus 91 rlnk~Dealk~~~~~~---------~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~ 161 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLD---------RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQV 161 (652)
T ss_pred HcccHHHHHHHHhccc---------ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhH
Confidence 5688888888887221 233445556667788889999999999888655421
Q ss_pred --------CchhHHHHHH---HHHHhhcCHHHHHHHHHHcc--------cCC-----hh-----hHHHHHHHHhccCchh
Q 044786 150 --------RNISLTGSLI---NFYGKFRCLEDADFVFSQLK--------RHN-----TV-----VWTAKIVNNCREGHFH 200 (340)
Q Consensus 150 --------~~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~--------~~~-----~~-----~~~~li~~~~~~~~~~ 200 (340)
....+|..+. ..+...|++.+|+++++... +.| .. .--.+.-.+...|+..
T Consensus 162 ~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ 241 (652)
T KOG2376|consen 162 QLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTA 241 (652)
T ss_pred HHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence 0112343333 34567799999999998872 111 11 1122344556789999
Q ss_pred HHHHHHHHHhhcc
Q 044786 201 QVFNDFKEMGRER 213 (340)
Q Consensus 201 ~a~~~~~~m~~~~ 213 (340)
+|..++....+..
T Consensus 242 ea~~iy~~~i~~~ 254 (652)
T KOG2376|consen 242 EASSIYVDIIKRN 254 (652)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998764
No 134
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.01 E-value=0.00022 Score=54.35 Aligned_cols=117 Identities=9% Similarity=0.031 Sum_probs=87.0
Q ss_pred cchHHHHHHHHHHhhh-----ccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHcccCChhhHHH
Q 044786 114 VFPAWIIVCVLKACVC-----TMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTA 188 (340)
Q Consensus 114 ~~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 188 (340)
..+..+|..++..+.+ .|..+-....++.|.+.|+.-|..+|+.|++.+=+ |.+- - .+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p---------------~n 106 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-P---------------RN 106 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-c---------------cc
Confidence 5677777777777764 47788888889999999999999999999998875 4322 1 11
Q ss_pred HHHHHh--ccCchhHHHHHHHHHhhcccCCChhhHHHHHHhcccCCchhchHHHHHHHHHH
Q 044786 189 KIVNNC--REGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVK 247 (340)
Q Consensus 189 li~~~~--~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~ 247 (340)
++.+-. .-.+-+-|++++++|...|+.||..|+..++..+++.+..-.....+.-+|.+
T Consensus 107 ~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpk 167 (228)
T PF06239_consen 107 FFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPK 167 (228)
T ss_pred HHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 111111 12345678999999999999999999999999999988875545555555544
No 135
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.00 E-value=0.0034 Score=56.41 Aligned_cols=79 Identities=13% Similarity=0.149 Sum_probs=42.7
Q ss_pred HHHhccCchhHHHHHHHHHhhcccCCChhhHHHHHHhcccCCchhchHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCH
Q 044786 191 VNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLL 270 (340)
Q Consensus 191 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 270 (340)
.+-.....|.+|+.+++.++.... -..-|..+...|+..|+++. ++.++-. ...++--|.+|.+.|++
T Consensus 740 eaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~-ae~lf~e---------~~~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEI-AEELFTE---------ADLFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHH-HHHHHHh---------cchhHHHHHHHhccccH
Confidence 344445566666666666655432 12235555666666666643 5544432 12334456666666666
Q ss_pred HHHHHHHHHhh
Q 044786 271 RDAERVFELIV 281 (340)
Q Consensus 271 ~~A~~~~~~~~ 281 (340)
+.|.++-.+..
T Consensus 808 ~da~kla~e~~ 818 (1636)
T KOG3616|consen 808 EDAFKLAEECH 818 (1636)
T ss_pred HHHHHHHHHhc
Confidence 66666655554
No 136
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=0.0089 Score=51.67 Aligned_cols=141 Identities=9% Similarity=-0.058 Sum_probs=90.1
Q ss_pred HHHHhccCchhHHHHHHHHHhhcccCCChhhHHH-------------------------HHHhcccCCchhchHHHHHHH
Q 044786 190 IVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSS-------------------------VLKACGGVDDDGNCGRQMHAN 244 (340)
Q Consensus 190 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~-------------------------ll~~~~~~~~~~~~~~~~~~~ 244 (340)
..+|.+.++++.|+..|.+.......|+..+=.. --..+.+.|++.. +..-+..
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~-Av~~Yte 383 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPE-AVKHYTE 383 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHH-HHHHHHH
Confidence 3466667788888888877655443443221110 1122456677756 4444444
Q ss_pred HHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhc--CCcHHHHHHHHHHHHHcCchHHHHHHHHHHHHcCCccchh
Q 044786 245 IVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD--KKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQES 322 (340)
Q Consensus 245 ~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~ 322 (340)
+++.. +-|...|..-.-+|.+.|.+..|.+=.+.-.+ ++.+..|..=..++....+|++|++.|++-.+.. |+..
T Consensus 384 AIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d--p~~~ 460 (539)
T KOG0548|consen 384 AIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD--PSNA 460 (539)
T ss_pred HHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--chhH
Confidence 55543 55788888888888888888888776655544 2345556655666667778888998888877664 7776
Q ss_pred HHHHHHHHhhhc
Q 044786 323 LINDLRIACSSI 334 (340)
Q Consensus 323 t~~~ll~a~~~~ 334 (340)
-+..-+.-|...
T Consensus 461 e~~~~~~rc~~a 472 (539)
T KOG0548|consen 461 EAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHHHHHHH
Confidence 676666666653
No 137
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.97 E-value=8.5e-05 Score=50.04 Aligned_cols=89 Identities=12% Similarity=0.153 Sum_probs=67.7
Q ss_pred HHHHHHHHhhhccchhhHHHHHHHHHHcCC-CCchhHHHHHHHHHHhhcCHHHHHHHHHHcccCChhhHHHHHHHHhccC
Q 044786 119 IIVCVLKACVCTMNMELGKQVHGLLFKLGS-SRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREG 197 (340)
Q Consensus 119 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~ 197 (340)
|-...|..|...+++.....+|+.+++.|+ .|+..+|+.++.+.++..-=. ..-.+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~-----------------------~~ie~ 83 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDS-----------------------EDIEN 83 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccc-----------------------hhHHH
Confidence 334566777777999999999999999999 899999999988776542110 11123
Q ss_pred chhHHHHHHHHHhhcccCCChhhHHHHHHhccc
Q 044786 198 HFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230 (340)
Q Consensus 198 ~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 230 (340)
+.-+.+.+|++|...+++|+..||+.++..+.+
T Consensus 84 kl~~LLtvYqDiL~~~lKP~~etYnivl~~Llk 116 (120)
T PF08579_consen 84 KLTNLLTVYQDILSNKLKPNDETYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 345677888999999999999999999877643
No 138
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.95 E-value=0.00056 Score=49.66 Aligned_cols=103 Identities=8% Similarity=-0.001 Sum_probs=66.0
Q ss_pred HhhcC-cCCcccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcC
Q 044786 69 FDEMP-LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLG 147 (340)
Q Consensus 69 ~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 147 (340)
+..+. +.+....-.+..-+...|++++|.++|+-....+ +-+..-|..|.-++-..|++++|...|.......
T Consensus 26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D------p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~ 99 (157)
T PRK15363 26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYD------AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK 99 (157)
T ss_pred HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 33344 3344444445555666777777777777777664 4455566666666666777777777777777666
Q ss_pred CCCchhHHHHHHHHHHhhcCHHHHHHHHHHc
Q 044786 148 SSRNISLTGSLINFYGKFRCLEDADFVFSQL 178 (340)
Q Consensus 148 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 178 (340)
+ -++..+-.+..++...|+.+.|.+.|+..
T Consensus 100 ~-ddp~~~~~ag~c~L~lG~~~~A~~aF~~A 129 (157)
T PRK15363 100 I-DAPQAPWAAAECYLACDNVCYAIKALKAV 129 (157)
T ss_pred C-CCchHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4 36666666677777777777777766654
No 139
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.90 E-value=0.0056 Score=56.10 Aligned_cols=109 Identities=15% Similarity=0.108 Sum_probs=63.8
Q ss_pred hccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCc---CCcccHHHHHHHHHcccChhHHHH
Q 044786 22 FQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL---RDFNSWAVMIVGYVDVADYQECIT 98 (340)
Q Consensus 22 ~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~ 98 (340)
..+++..|.+..+.+.+.++-.+-..++.++. +.|.|+.++|..+++.... .|..|...+-.+|.+.++.++|..
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLs--l~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALS--LFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHH--HHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence 45667777777776666522222222222222 3566777777766666552 255566666677777777777777
Q ss_pred HHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHH
Q 044786 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQV 139 (340)
Q Consensus 99 ~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 139 (340)
+|++.... .|+......+..+|.+.+++.+-.+.
T Consensus 99 ~Ye~~~~~-------~P~eell~~lFmayvR~~~yk~qQka 132 (932)
T KOG2053|consen 99 LYERANQK-------YPSEELLYHLFMAYVREKSYKKQQKA 132 (932)
T ss_pred HHHHHHhh-------CCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77776665 45566666666666666655444433
No 140
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.90 E-value=0.00032 Score=60.05 Aligned_cols=120 Identities=12% Similarity=-0.010 Sum_probs=73.6
Q ss_pred CCChhhHHHHHHhcccCCchhchHHHHHHHHHHh-CCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhc---CCcHHHHH
Q 044786 215 KKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKI-GLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD---KKNIASWN 290 (340)
Q Consensus 215 ~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ 290 (340)
+.+...+..++..+....+.+++...+++.-... ....-+.|..++|+.|.+.|..+.+..+++.=.. =||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 3455566666666666666655333333322221 2223334445777777777777777776654332 16777777
Q ss_pred HHHHHHHHcCchHHHHHHHHHHHHcCCccchhHHHHHHHHhhhc
Q 044786 291 AMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSI 334 (340)
Q Consensus 291 ~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~a~~~~ 334 (340)
.|+..+.+.|++..|.++..+|...+.-.++.|+.--+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 77777777777777777777777776666777777777666665
No 141
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.89 E-value=0.00014 Score=49.01 Aligned_cols=82 Identities=12% Similarity=0.067 Sum_probs=64.2
Q ss_pred hHHHHHHHHhccCchhHHHHHHHHHhhccc-CCChhhHHHHHHhcccCCc----hhc---hHHHHHHHHHHhCCCccHHH
Q 044786 185 VWTAKIVNNCREGHFHQVFNDFKEMGRERI-KKNSYTFSSVLKACGGVDD----DGN---CGRQMHANIVKIGLESDEYV 256 (340)
Q Consensus 185 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~t~~~ll~~~~~~~~----~~~---~~~~~~~~~~~~~~~~~~~~ 256 (340)
+-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++..- .+. ....+++.+...+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 345567777778999999999999999999 9999999999998765332 111 14456778888889999999
Q ss_pred HHHHHHHHhc
Q 044786 257 QCGLVDMYGK 266 (340)
Q Consensus 257 ~~~li~~~~~ 266 (340)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9988887764
No 142
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.89 E-value=0.015 Score=53.19 Aligned_cols=188 Identities=11% Similarity=0.052 Sum_probs=113.7
Q ss_pred CcchhHHHHHHhhhccchhhHHHHHHHHHhhcCC--------CCCHHHHHHHHHHHHhcCChhHHHHHHhhcCcCCcccH
Q 044786 9 TTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNI--------KPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSW 80 (340)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~--------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 80 (340)
+...|..+.+.|.+.++++-|.-.+..|....|. .|+ .+-....-.....|-+++|+.++++-+. |
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR-----~ 829 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR-----Y 829 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH-----H
Confidence 4456888999999999999998888887755332 121 2222222233456778888888777653 3
Q ss_pred HHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHH----------HcC---
Q 044786 81 AVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLF----------KLG--- 147 (340)
Q Consensus 81 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----------~~~--- 147 (340)
..|-..|-..|.|++|.++-+.-- . ..-..||..-..-+...++.+.|++.|+... ...
T Consensus 830 DLlNKlyQs~g~w~eA~eiAE~~D----R----iHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~ 901 (1416)
T KOG3617|consen 830 DLLNKLYQSQGMWSEAFEIAETKD----R----IHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQ 901 (1416)
T ss_pred HHHHHHHHhcccHHHHHHHHhhcc----c----eehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHH
Confidence 444455666777777776644311 1 1234456656666666666666666665321 111
Q ss_pred ------CCCchhHHHHHHHHHHhhcCHHHHHHHHHHccc------------------------CChhhHHHHHHHHhccC
Q 044786 148 ------SSRNISLTGSLINFYGKFRCLEDADFVFSQLKR------------------------HNTVVWTAKIVNNCREG 197 (340)
Q Consensus 148 ------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------------------------~~~~~~~~li~~~~~~~ 197 (340)
-..|...|.--...+-..|+++.|+.+|..... .|....-.+.+.|-..|
T Consensus 902 ~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g 981 (1416)
T KOG3617|consen 902 IEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDG 981 (1416)
T ss_pred HHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhH
Confidence 012333444444445556777777777665432 14555666788888889
Q ss_pred chhHHHHHHHHHh
Q 044786 198 HFHQVFNDFKEMG 210 (340)
Q Consensus 198 ~~~~a~~~~~~m~ 210 (340)
++.+|..+|.+.+
T Consensus 982 ~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 982 DVVKAVKFFTRAQ 994 (1416)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998887765
No 143
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.88 E-value=0.00092 Score=57.36 Aligned_cols=85 Identities=9% Similarity=0.038 Sum_probs=39.7
Q ss_pred hhHHHHHHHHHHhhcCHHHHHHHHHHcccC------ChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCChhhHHHHH
Q 044786 152 ISLTGSLINFYGKFRCLEDADFVFSQLKRH------NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225 (340)
Q Consensus 152 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll 225 (340)
......+++......+++.+..++.+.... -..|..++|+.|...|..++++.+++.=..-|+-||..|++.++
T Consensus 66 ~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lm 145 (429)
T PF10037_consen 66 SLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLM 145 (429)
T ss_pred HHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHH
Confidence 333344444444444444444444443211 11233455555555555555555555555555555555555555
Q ss_pred HhcccCCchhc
Q 044786 226 KACGGVDDDGN 236 (340)
Q Consensus 226 ~~~~~~~~~~~ 236 (340)
..+.+.|++..
T Consensus 146 d~fl~~~~~~~ 156 (429)
T PF10037_consen 146 DHFLKKGNYKS 156 (429)
T ss_pred HHHhhcccHHH
Confidence 55555555544
No 144
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.86 E-value=0.016 Score=52.44 Aligned_cols=277 Identities=10% Similarity=0.007 Sum_probs=166.7
Q ss_pred chhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcC----cCCcccHHHHHHHHHcccChhHHHHHH
Q 044786 25 DSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMP----LRDFNSWAVMIVGYVDVADYQECITLF 100 (340)
Q Consensus 25 ~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~ 100 (340)
...++++.++...+..+-.|+...|-++ -|+..++++.|.+...+.. ..+...|..+...+...+++.+|+.+.
T Consensus 459 ~h~kslqale~av~~d~~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vv 536 (799)
T KOG4162|consen 459 LHKKSLQALEEAVQFDPTDPLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVV 536 (799)
T ss_pred HHHHHHHHHHHHHhcCCCCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 4567888888888774455554444443 4667788999988887765 346778999999999999999999999
Q ss_pred HHHHHhhcCCccccchHH-HHHHHHHHhhhccchhhHHHHHHHHHH---------------------cCC-----CC--c
Q 044786 101 AEMMKRKKGHMLLVFPAW-IIVCVLKACVCTMNMELGKQVHGLLFK---------------------LGS-----SR--N 151 (340)
Q Consensus 101 ~~m~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~---------------------~~~-----~~--~ 151 (340)
+.....- |+.. ....=+..-...++.+++.....++.. .|. +| .
T Consensus 537 d~al~E~-------~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a 609 (799)
T KOG4162|consen 537 DAALEEF-------GDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDA 609 (799)
T ss_pred HHHHHHh-------hhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCccccccc
Confidence 9888772 2211 111111111123333333333222211 111 11 1
Q ss_pred hhHHHHHHHHHHhhc---CHHHHHHHHHHcccCC------hhhHHHHHHHHhccCchhHHHHHHHHHhhcccCC-ChhhH
Q 044786 152 ISLTGSLINFYGKFR---CLEDADFVFSQLKRHN------TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKK-NSYTF 221 (340)
Q Consensus 152 ~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~ 221 (340)
..++..+.......+ ..+.....+.....++ ...|......+.+.++.++|...+.+.... .| ....|
T Consensus 610 ~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~--~~l~~~~~ 687 (799)
T KOG4162|consen 610 ISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI--DPLSASVY 687 (799)
T ss_pred chhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc--chhhHHHH
Confidence 223333222222111 1111111111111222 123555566777888888888777777653 33 34444
Q ss_pred HHHHHhcccCCchhchHHHHHHHHHHhCCCc-cHHHHHHHHHHHhccCCHHHHHH--HHHHhhc--CCcHHHHHHHHHHH
Q 044786 222 SSVLKACGGVDDDGNCGRQMHANIVKIGLES-DEYVQCGLVDMYGKCRLLRDAER--VFELIVD--KKNIASWNAMLVGY 296 (340)
Q Consensus 222 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~--~~~~~~~--~~~~~~~~~li~~~ 296 (340)
...-..+...|..++ |...+..... +.| ++....++..++.+.|+...|.. ++..+.. +.+...|-.+...+
T Consensus 688 ~~~G~~~~~~~~~~E-A~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~ 764 (799)
T KOG4162|consen 688 YLRGLLLEVKGQLEE-AKEAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVF 764 (799)
T ss_pred HHhhHHHHHHHhhHH-HHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 444445556666656 5444444333 445 55677889999999999888888 8887765 34888999999999
Q ss_pred HHcCchHHHHHHHHHHHHc
Q 044786 297 IRNGLYVEATKFLYLMKAS 315 (340)
Q Consensus 297 ~~~~~~~~a~~~~~~m~~~ 315 (340)
-+.|+.+.|.+.|+.-.+.
T Consensus 765 k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 765 KKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHccchHHHHHHHHHHHhh
Confidence 9999999999999886554
No 145
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.86 E-value=0.00034 Score=46.48 Aligned_cols=92 Identities=15% Similarity=0.030 Sum_probs=50.8
Q ss_pred HHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHH
Q 044786 80 WAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLI 159 (340)
Q Consensus 80 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 159 (340)
+..+...+...|++++|...+++..+.. +.+...+..+...+...+++++|.+.++...+.... +..++..+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~ 75 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD------PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLG 75 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC------CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHH
Confidence 3445555566666666666666666552 223345555556666666666666666665554422 223445555
Q ss_pred HHHHhhcCHHHHHHHHHHc
Q 044786 160 NFYGKFRCLEDADFVFSQL 178 (340)
Q Consensus 160 ~~~~~~~~~~~a~~~~~~~ 178 (340)
..+...|++++|...+...
T Consensus 76 ~~~~~~~~~~~a~~~~~~~ 94 (100)
T cd00189 76 LAYYKLGKYEEALEAYEKA 94 (100)
T ss_pred HHHHHHHhHHHHHHHHHHH
Confidence 5555555555555555443
No 146
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.85 E-value=0.0081 Score=56.49 Aligned_cols=233 Identities=11% Similarity=0.039 Sum_probs=145.6
Q ss_pred CCCC-CHHHHHHHHHHHHhcCChhHHHHHHhhcCc--CCcc-cHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccch
Q 044786 41 NIKP-TLLFLNRLLLMHVSCGQLDTARQLFDEMPL--RDFN-SWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP 116 (340)
Q Consensus 41 g~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 116 (340)
.+.| +...+..|+..+...+++++|.++.+.... |+.. .|-.+...+...++...+..+ .+
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~------------- 89 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NL------------- 89 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hh-------------
Confidence 3444 456778888888888888888888876553 3322 343344455566665555444 22
Q ss_pred HHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHcccC---ChhhHHHHHHHH
Q 044786 117 AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH---NTVVWTAKIVNN 193 (340)
Q Consensus 117 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~ 193 (340)
+.......++..+..+++.+...+ .+...+..+..+|-+.|+.++|..+|+++.+- |+.+.|.+.-.|
T Consensus 90 -------l~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ 160 (906)
T PRK14720 90 -------IDSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSY 160 (906)
T ss_pred -------hhhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence 222223334434444444454433 23446777888888889999999999887643 667788888888
Q ss_pred hccCchhHHHHHHHHHhhcccCCChhhHHHHHHhcccCCchhchHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCHHHH
Q 044786 194 CREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDA 273 (340)
Q Consensus 194 ~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 273 (340)
... +.++|..++.+.+.. +...+++.. +..++..+.... | .+++.-
T Consensus 161 ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~-~~e~W~k~~~~~--~---------------~d~d~f 206 (906)
T PRK14720 161 EEE-DKEKAITYLKKAIYR---------------FIKKKQYVG-IEEIWSKLVHYN--S---------------DDFDFF 206 (906)
T ss_pred HHh-hHHHHHHHHHHHHHH---------------HHhhhcchH-HHHHHHHHHhcC--c---------------ccchHH
Confidence 888 888888888887763 333344433 666666665542 1 122222
Q ss_pred HHHHHHhhc----CCcHHHHHHHHHHHHHcCchHHHHHHHHHHHHcCCccchhHHHHHHHHhh
Q 044786 274 ERVFELIVD----KKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332 (340)
Q Consensus 274 ~~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~a~~ 332 (340)
.++.+.+.. ..-+.++-.+-..|-..++|+++..+++...+..-. |.....-++.+|.
T Consensus 207 ~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 207 LRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 333333332 234566777778888999999999999999876432 4455666666554
No 147
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.83 E-value=0.0088 Score=46.78 Aligned_cols=184 Identities=11% Similarity=0.058 Sum_probs=122.8
Q ss_pred hccchhhHHHHHHHHHhhc--C-CCCCHH-HHHHHHHHHHhcCChhHHHHHHhhcCcCCcccHHHHH---HHHHcccChh
Q 044786 22 FQKDSAGAFELLNHIRKRV--N-IKPTLL-FLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMI---VGYVDVADYQ 94 (340)
Q Consensus 22 ~~~~~~~a~~~~~~m~~~~--g-~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li---~~~~~~g~~~ 94 (340)
...+.++..+++..+.... | ..|+.. .|..++-+....|+.+.|..+++.+..+-+.++.... --+-..|+++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchh
Confidence 3457778888887776542 4 556654 4556666777889999999988887754333333221 1233468889
Q ss_pred HHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHH
Q 044786 95 ECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFV 174 (340)
Q Consensus 95 ~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 174 (340)
+|+++++..++.+ +.|..++--=+...-..|.--+|++-+....+.- ..|...|.-+.+.|...|++++|.-.
T Consensus 104 ~A~e~y~~lL~dd------pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F-~~D~EAW~eLaeiY~~~~~f~kA~fC 176 (289)
T KOG3060|consen 104 EAIEYYESLLEDD------PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF-MNDQEAWHELAEIYLSEGDFEKAAFC 176 (289)
T ss_pred hHHHHHHHHhccC------cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHhHhHHHHHHHH
Confidence 9999999998885 5566666655555555666556766666655543 44888899999999999999999999
Q ss_pred HHHcc--cC-ChhhHHHHHHHHhc---cCchhHHHHHHHHHhhc
Q 044786 175 FSQLK--RH-NTVVWTAKIVNNCR---EGHFHQVFNDFKEMGRE 212 (340)
Q Consensus 175 ~~~~~--~~-~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~ 212 (340)
++++. +| +...+..+...+.- ..+..-|.++|.+..+.
T Consensus 177 lEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 177 LEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 99875 44 33333344333333 34567788888887764
No 148
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.81 E-value=0.00076 Score=47.35 Aligned_cols=96 Identities=13% Similarity=0.033 Sum_probs=56.6
Q ss_pred chhHHHHHHhhhccchhhHHHHHHHHHhhcCC-CCCHHHHHHHHHHHHhcCChhHHHHHHhhcCc--CC----cccHHHH
Q 044786 11 DMYTCLIKECTFQKDSAGAFELLNHIRKRVNI-KPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL--RD----FNSWAVM 83 (340)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~----~~~~~~l 83 (340)
.++-.+...+.+.|++++|.+.|+.+.+...- +.....+..+...+.+.|+++.|.+.|+.+.. |+ ..++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 34555566666677777777777777654110 11133455566666677777777777766552 22 2235555
Q ss_pred HHHHHcccChhHHHHHHHHHHHh
Q 044786 84 IVGYVDVADYQECITLFAEMMKR 106 (340)
Q Consensus 84 i~~~~~~g~~~~a~~~~~~m~~~ 106 (340)
...+...|++++|.+.++++...
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHH
Confidence 56666667777777777766666
No 149
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.81 E-value=8.9e-05 Score=48.59 Aligned_cols=82 Identities=13% Similarity=0.105 Sum_probs=48.3
Q ss_pred ccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHH
Q 044786 90 VADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169 (340)
Q Consensus 90 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 169 (340)
.|+++.|+.+++++.+.. .. .++...+..+..++.+.|++++|..+++. .+.+.. +......+..+|.+.|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~-~~---~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~ 75 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELD-PT---NPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYE 75 (84)
T ss_dssp TT-HHHHHHHHHHHHHHH-CG---THHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HH
T ss_pred CccHHHHHHHHHHHHHHC-CC---ChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHH
Confidence 467778888888887773 00 11344455567777777777777777766 322221 2233334466677777777
Q ss_pred HHHHHHHH
Q 044786 170 DADFVFSQ 177 (340)
Q Consensus 170 ~a~~~~~~ 177 (340)
+|.++|++
T Consensus 76 eAi~~l~~ 83 (84)
T PF12895_consen 76 EAIKALEK 83 (84)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 77776654
No 150
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.80 E-value=0.013 Score=47.93 Aligned_cols=263 Identities=12% Similarity=0.128 Sum_probs=182.7
Q ss_pred CCCcchhHHHH---HHhhhccchhhHHHHHHHHHhhcCCCCCHHHHH-HHHHHHHhcCChhHHHHHHhhcCcCCcc----
Q 044786 7 PITTDMYTCLI---KECTFQKDSAGAFELLNHIRKRVNIKPTLLFLN-RLLLMHVSCGQLDTARQLFDEMPLRDFN---- 78 (340)
Q Consensus 7 ~~~~~~~~~li---~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~-~li~~~~~~~~~~~a~~~~~~~~~~~~~---- 78 (340)
..|+..|.++. ..|...|+...|+.=++...+. +||-..-. .-...+.+.|.++.|..=|+.+.+.++.
T Consensus 66 e~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel---KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~ 142 (504)
T KOG0624|consen 66 EGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL---KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLV 142 (504)
T ss_pred cCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc---CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchh
Confidence 34555555543 3566778888888888887754 77754332 2235678999999999999998854331
Q ss_pred --c------------HHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHH
Q 044786 79 --S------------WAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLF 144 (340)
Q Consensus 79 --~------------~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 144 (340)
. ....+..+...|+...|+.....+++.. +-+...+..-..+|...|.+..|+.=++...
T Consensus 143 ~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~------~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~as 216 (504)
T KOG0624|consen 143 LEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ------PWDASLRQARAKCYIAEGEPKKAIHDLKQAS 216 (504)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC------cchhHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 1 2234556677899999999999999885 6788899999999999999999998877776
Q ss_pred HcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHcccCChh------hHHHH---------HHHHhccCchhHHHHHHHHH
Q 044786 145 KLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTV------VWTAK---------IVNNCREGHFHQVFNDFKEM 209 (340)
Q Consensus 145 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~l---------i~~~~~~~~~~~a~~~~~~m 209 (340)
+..-. +..++..+-..+...|+.+.++...++-.+-|.. .|..+ +......++|.++++-.+..
T Consensus 217 kLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~v 295 (504)
T KOG0624|consen 217 KLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKV 295 (504)
T ss_pred hcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 66533 5566667778888999999998888876543221 12221 33445678888888888887
Q ss_pred hhcccCCChhh---HHHHHHhcccCCchhchHHHHHHHHHHhCCCc-cHHHHHHHHHHHhccCCHHHHHHHHHHhhc
Q 044786 210 GRERIKKNSYT---FSSVLKACGGVDDDGNCGRQMHANIVKIGLES-DEYVQCGLVDMYGKCRLLRDAERVFELIVD 282 (340)
Q Consensus 210 ~~~~~~p~~~t---~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 282 (340)
.+........+ +..+-.++...+.+.+ +.+...... .+.| |+.++.--.++|.-...++.|..=|+...+
T Consensus 296 lk~ep~~~~ir~~~~r~~c~C~~~d~~~~e-AiqqC~evL--~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 296 LKNEPEETMIRYNGFRVLCTCYREDEQFGE-AIQQCKEVL--DIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred HhcCCcccceeeeeeheeeecccccCCHHH-HHHHHHHHH--hcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 77532212333 3344555666777766 333333333 3455 488888888889888889999988887764
No 151
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.79 E-value=0.023 Score=50.40 Aligned_cols=291 Identities=11% Similarity=0.027 Sum_probs=150.7
Q ss_pred chhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHH------HHHhcCChhHHHHHHhhcCcC--Ccc-cHH
Q 044786 11 DMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLL------MHVSCGQLDTARQLFDEMPLR--DFN-SWA 81 (340)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~------~~~~~~~~~~a~~~~~~~~~~--~~~-~~~ 81 (340)
..|..+.-+..-.|+...|..+.+...+.-.-.|+...+..... ...+.|.+++|.+.+...... |-. .-.
T Consensus 144 a~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e 223 (700)
T KOG1156|consen 144 ASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEE 223 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhh
Confidence 34556666666778888888888888877223466666554443 344567778887777665533 111 223
Q ss_pred HHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhh-hccchhhHH-HHHHHHHHcCCCCchhHHHHHH
Q 044786 82 VMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACV-CTMNMELGK-QVHGLLFKLGSSRNISLTGSLI 159 (340)
Q Consensus 82 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~ 159 (340)
.-...+.+.++.++|..++..++.. .||..-|+..+..+. +..+.-++. .+|....+.-.......... +
T Consensus 224 ~ka~l~~kl~~lEeA~~~y~~Ll~r-------nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlp-l 295 (700)
T KOG1156|consen 224 TKADLLMKLGQLEEAVKVYRRLLER-------NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLP-L 295 (700)
T ss_pred hHHHHHHHHhhHHhHHHHHHHHHhh-------CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhcc-H
Confidence 3445667788888888888888888 677776666555444 333333333 55555443321110000000 0
Q ss_pred HHHHhhcCHH-HHHHHHHHcccCC-hhhHHHHHHHHhccCchhHHHHHHHHHh--------hcc----------cCCCh-
Q 044786 160 NFYGKFRCLE-DADFVFSQLKRHN-TVVWTAKIVNNCREGHFHQVFNDFKEMG--------RER----------IKKNS- 218 (340)
Q Consensus 160 ~~~~~~~~~~-~a~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~--------~~~----------~~p~~- 218 (340)
+.... .++. ....++..+.+++ +.++..+..-|-.-...+ +++++. ..| -+|+.
T Consensus 296 svl~~-eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~----~le~Lvt~y~~~L~~~~~f~~~D~~~~E~Pttl 370 (700)
T KOG1156|consen 296 SVLNG-EELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVA----FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTL 370 (700)
T ss_pred HHhCc-chhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhH----HHHHHHHHHHhhcccccCCCcccccccCCchHH
Confidence 00000 1111 1112222222221 223333333332211111 222221 010 13333
Q ss_pred -hhHHHHHHhcccCCchhchHHHHHHHHHHhCCCc-cHHHHHHHHHHHhccCCHHHHHHHHHHhhc--CCcHHHHHHHHH
Q 044786 219 -YTFSSVLKACGGVDDDGNCGRQMHANIVKIGLES-DEYVQCGLVDMYGKCRLLRDAERVFELIVD--KKNIASWNAMLV 294 (340)
Q Consensus 219 -~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~li~ 294 (340)
.|+--+...+-..|+++. +..+.+....+ .| -+..|..-.+.+...|++++|..++++..+ .+|...=..-..
T Consensus 371 lWt~y~laqh~D~~g~~~~-A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAK 447 (700)
T KOG1156|consen 371 LWTLYFLAQHYDKLGDYEV-ALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAK 447 (700)
T ss_pred HHHHHHHHHHHHHcccHHH-HHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 233445566667777754 66666655543 23 334555555677777888888888877764 344443334444
Q ss_pred HHHHcCchHHHHHHHHHHHHcCC
Q 044786 295 GYIRNGLYVEATKFLYLMKASGI 317 (340)
Q Consensus 295 ~~~~~~~~~~a~~~~~~m~~~g~ 317 (340)
=..+..+.++|.++.......|.
T Consensus 448 YmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 448 YMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHccccHHHHHHHHHhhhccc
Confidence 45567777777777766666654
No 152
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.75 E-value=0.00089 Score=46.98 Aligned_cols=24 Identities=21% Similarity=0.461 Sum_probs=10.9
Q ss_pred HHHHHHcccChhHHHHHHHHHHHh
Q 044786 83 MIVGYVDVADYQECITLFAEMMKR 106 (340)
Q Consensus 83 li~~~~~~g~~~~a~~~~~~m~~~ 106 (340)
+...+.+.|++++|.+.|.++...
T Consensus 8 ~~~~~~~~~~~~~A~~~~~~~~~~ 31 (119)
T TIGR02795 8 AALLVLKAGDYADAIQAFQAFLKK 31 (119)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 333444444444444444444443
No 153
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.75 E-value=0.00014 Score=47.66 Aligned_cols=79 Identities=16% Similarity=0.121 Sum_probs=59.2
Q ss_pred ccchhhHHHHHHHHHHcCCC-CchhHHHHHHHHHHhhcCHHHHHHHHHHcc--cCChhhHHHHHHHHhccCchhHHHHHH
Q 044786 130 TMNMELGKQVHGLLFKLGSS-RNISLTGSLINFYGKFRCLEDADFVFSQLK--RHNTVVWTAKIVNNCREGHFHQVFNDF 206 (340)
Q Consensus 130 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~ 206 (340)
.|+++.|..+++.+.+.... ++...+..+..+|.+.|++++|..+++... ..+....-.+..++.+.|++++|++++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 47889999999999887653 355556668999999999999999997722 223344455678888999999999998
Q ss_pred HH
Q 044786 207 KE 208 (340)
Q Consensus 207 ~~ 208 (340)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 75
No 154
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.75 E-value=0.00032 Score=46.65 Aligned_cols=91 Identities=11% Similarity=0.092 Sum_probs=52.8
Q ss_pred hHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCc---CCcccHHHHHHHHHc
Q 044786 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL---RDFNSWAVMIVGYVD 89 (340)
Q Consensus 13 ~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~ 89 (340)
+..+...+...|++++|.+.++...+. .+.+...+..+...+...+++++|.+.|+.... .+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Confidence 344555556666777777777666654 222335555566666666666666666665442 233345555566666
Q ss_pred ccChhHHHHHHHHHHH
Q 044786 90 VADYQECITLFAEMMK 105 (340)
Q Consensus 90 ~g~~~~a~~~~~~m~~ 105 (340)
.|+++.|...+....+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 6666666666665544
No 155
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.69 E-value=0.0014 Score=50.09 Aligned_cols=98 Identities=12% Similarity=0.274 Sum_probs=71.0
Q ss_pred HHHHHHc--ccCChhhHHHHHHHHhc-----cCchhHHHHHHHHHhhcccCCChhhHHHHHHhcccCC------------
Q 044786 172 DFVFSQL--KRHNTVVWTAKIVNNCR-----EGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVD------------ 232 (340)
Q Consensus 172 ~~~~~~~--~~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~------------ 232 (340)
...|+.. ..++-.+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.||..+-+..
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3444444 34566667777766664 3556666667777888888888888888888775421
Q ss_pred ---chhchHHHHHHHHHHhCCCccHHHHHHHHHHHhccCC
Q 044786 233 ---DDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRL 269 (340)
Q Consensus 233 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 269 (340)
.-.+.+..+++.|...|+-||..++..|++.+.+.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1125588999999999999999999999999977665
No 156
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.68 E-value=0.0021 Score=48.61 Aligned_cols=89 Identities=10% Similarity=0.052 Sum_probs=51.4
Q ss_pred cHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccc-hHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHH
Q 044786 79 SWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVF-PAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGS 157 (340)
Q Consensus 79 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 157 (340)
.+..+...+...|++++|...|++....... .+ ....+..+...+.+.|++++|...++...+.... +...+..
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~ 111 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEED----PNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNN 111 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc----cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHH
Confidence 4555556666667777777777766654200 11 1345666666677777777777777766665422 3444555
Q ss_pred HHHHHHhhcCHHHHH
Q 044786 158 LINFYGKFRCLEDAD 172 (340)
Q Consensus 158 l~~~~~~~~~~~~a~ 172 (340)
+...|...|+...+.
T Consensus 112 lg~~~~~~g~~~~a~ 126 (172)
T PRK02603 112 IAVIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHHHcCChHhHh
Confidence 555666655544433
No 157
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.65 E-value=0.0037 Score=51.50 Aligned_cols=88 Identities=10% Similarity=0.110 Sum_probs=44.9
Q ss_pred HHHHhhhc-cchhhHHHHHHHHHHc----CCCC--chhHHHHHHHHHHhhcCHHHHHHHHHHcccC---------Chh-h
Q 044786 123 VLKACVCT-MNMELGKQVHGLLFKL----GSSR--NISLTGSLINFYGKFRCLEDADFVFSQLKRH---------NTV-V 185 (340)
Q Consensus 123 ll~~~~~~-~~~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~-~ 185 (340)
+...|... |+++.|.+.|+...+. + .+ -..++..+...+.+.|++++|.++|+++... ++. .
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~ 198 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEY 198 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHH
Confidence 33444444 6666666666655432 2 11 1234556666677777777777777765321 111 1
Q ss_pred HHHHHHHHhccCchhHHHHHHHHHhh
Q 044786 186 WTAKIVNNCREGHFHQVFNDFKEMGR 211 (340)
Q Consensus 186 ~~~li~~~~~~~~~~~a~~~~~~m~~ 211 (340)
|-..+-++...|++..|...+++...
T Consensus 199 ~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 199 FLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 22233355556777777777777654
No 158
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.63 E-value=0.003 Score=51.88 Aligned_cols=142 Identities=13% Similarity=0.129 Sum_probs=95.1
Q ss_pred hhHHHHHHHHhccCchhHHHHHHHHHhhcc-cCCChhhHHHHHHhcccCCchhchHHHHHHHHHHhCCCccHHHHHHHHH
Q 044786 184 VVWTAKIVNNCREGHFHQVFNDFKEMGRER-IKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVD 262 (340)
Q Consensus 184 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 262 (340)
.+|-.+++..-+.+..+.|..+|.+..+.+ +........+.+..++ .++. +.|..+++...+. ++.+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~-~~d~-~~A~~Ife~glk~-f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYC-NKDP-KRARKIFERGLKK-FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHT-CS-H-HHHHHHHHHHHHH-HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh-CCCH-HHHHHHHHHHHHH-CCCCHHHHHHHHH
Confidence 357777777777777888888888887542 2233333344443332 2333 4478888877764 5667888888889
Q ss_pred HHhccCCHHHHHHHHHHhhcC-C----cHHHHHHHHHHHHHcCchHHHHHHHHHHHHcCCccchhHHHHHHHH
Q 044786 263 MYGKCRLLRDAERVFELIVDK-K----NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIA 330 (340)
Q Consensus 263 ~~~~~~~~~~A~~~~~~~~~~-~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~a 330 (340)
.+.+.++.+.|..+|++.... + ....|...+.-=.+.|+.+.+.++.+++.+. -|+...+..+++-
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~r 149 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSDR 149 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHCC
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHHH
Confidence 899999999999999988763 2 2358888888888899999999998888765 4444444444443
No 159
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.63 E-value=0.053 Score=50.06 Aligned_cols=53 Identities=11% Similarity=0.008 Sum_probs=27.4
Q ss_pred HhccCCHHHHHHHHHH-hhc---CCcHHHHHHHHHHHHHcCchHHHHHHHHHHHHcC
Q 044786 264 YGKCRLLRDAERVFEL-IVD---KKNIASWNAMLVGYIRNGLYVEATKFLYLMKASG 316 (340)
Q Consensus 264 ~~~~~~~~~A~~~~~~-~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 316 (340)
+...|++++|++++.. ..+ ..+...-+.-+..+...++|.+..++..++..+|
T Consensus 200 L~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 200 LELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 3445566666666622 211 1233333444555556666666666666665554
No 160
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.60 E-value=0.0026 Score=47.96 Aligned_cols=65 Identities=8% Similarity=-0.020 Sum_probs=34.0
Q ss_pred cHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHc
Q 044786 79 SWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKL 146 (340)
Q Consensus 79 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 146 (340)
.|..+...+...|++++|+..|++........ .....++..+...+...|++++|.+.++...+.
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~---~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDP---YDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccc---hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34445555555566666666666665442000 012235555556666666666666666555544
No 161
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.59 E-value=0.0024 Score=52.47 Aligned_cols=141 Identities=11% Similarity=0.115 Sum_probs=88.6
Q ss_pred cHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHH-hhhccchhhHHHHHHHHHHcCCCCchhHHHH
Q 044786 79 SWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKA-CVCTMNMELGKQVHGLLFKLGSSRNISLTGS 157 (340)
Q Consensus 79 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 157 (340)
+|-.+++..-+.+..+.|.++|.+.++.+ ..+..+|...... +...++.+.|.++|+...+. +..+...+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~------~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~ 75 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK------RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLE 75 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC------CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC------CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHH
Confidence 46667777777777777777777776442 2223333333333 22235666677777777665 2336666777
Q ss_pred HHHHHHhhcCHHHHHHHHHHcccC------ChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCChhhHHHHHHhc
Q 044786 158 LINFYGKFRCLEDADFVFSQLKRH------NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228 (340)
Q Consensus 158 l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~ 228 (340)
-++.+.+.++.+.|..+|++.... -...|...+.-=.+.|+.+.+..+.+++.+. -|+...+..++.-|
T Consensus 76 Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 76 YLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSDRY 150 (280)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHCCT
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHHHh
Confidence 778888888888888888887543 2346888888888888888888888888773 45555555555554
No 162
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.56 E-value=0.0012 Score=56.34 Aligned_cols=101 Identities=11% Similarity=-0.008 Sum_probs=79.7
Q ss_pred HHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCcC---CcccHHHHHHHHHcccCh
Q 044786 17 IKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLR---DFNSWAVMIVGYVDVADY 93 (340)
Q Consensus 17 i~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~ 93 (340)
...+...|+++.|++.|+...+. -+-+...|..+..+|.+.|++++|+..+++.... +...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 45566789999999999999976 3446778888889999999999999999988733 445788888899999999
Q ss_pred hHHHHHHHHHHHhhcCCccccchHHHHHHHHHH
Q 044786 94 QECITLFAEMMKRKKGHMLLVFPAWIIVCVLKA 126 (340)
Q Consensus 94 ~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~ 126 (340)
++|+..|++.... .|+.......+..
T Consensus 87 ~eA~~~~~~al~l-------~P~~~~~~~~l~~ 112 (356)
T PLN03088 87 QTAKAALEKGASL-------APGDSRFTKLIKE 112 (356)
T ss_pred HHHHHHHHHHHHh-------CCCCHHHHHHHHH
Confidence 9999999999988 4554444444433
No 163
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.56 E-value=0.027 Score=45.19 Aligned_cols=55 Identities=15% Similarity=0.094 Sum_probs=35.1
Q ss_pred HHHHHhcCChhHHHHHHhhcCcCCcc---c---HHHHHHHHHcccChhHHHHHHHHHHHhh
Q 044786 53 LLMHVSCGQLDTARQLFDEMPLRDFN---S---WAVMIVGYVDVADYQECITLFAEMMKRK 107 (340)
Q Consensus 53 i~~~~~~~~~~~a~~~~~~~~~~~~~---~---~~~li~~~~~~g~~~~a~~~~~~m~~~~ 107 (340)
...+...|++++|.+.|+.+....+. . .-.+..++.+.+++++|...+++..+..
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 33445677788888877777643222 1 1234566677778888888887777764
No 164
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.55 E-value=0.076 Score=49.83 Aligned_cols=157 Identities=7% Similarity=-0.074 Sum_probs=72.4
Q ss_pred hHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCcCCcc---c--HHHHHHHH
Q 044786 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFN---S--WAVMIVGY 87 (340)
Q Consensus 13 ~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~---~--~~~li~~~ 87 (340)
|..+-+.|+...+...|.+.|+...+. . .-+......+.+.|++..+++.|..+.-...+.+.. . |...--.|
T Consensus 495 f~~LG~iYrd~~Dm~RA~kCf~KAFeL-D-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 495 FAFLGQIYRDSDDMKRAKKCFDKAFEL-D-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC-C-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 444444444444555555555555433 1 113444555555555555555555552222222111 1 11222234
Q ss_pred HcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcC
Q 044786 88 VDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167 (340)
Q Consensus 88 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 167 (340)
.+.++...|+..|+.....+ +-|...|..+..+|...|++..|.++|.......+...-..| ...-.-+..|.
T Consensus 573 Lea~n~h~aV~~fQsALR~d------PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~f-k~A~~ecd~Gk 645 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTD------PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRF-KEAVMECDNGK 645 (1238)
T ss_pred cCccchhhHHHHHHHHhcCC------chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHH-HHHHHHHHhhh
Confidence 45555555555555555442 345556666666666666666666666555444322111111 11122334455
Q ss_pred HHHHHHHHHHc
Q 044786 168 LEDADFVFSQL 178 (340)
Q Consensus 168 ~~~a~~~~~~~ 178 (340)
+.+|...+..+
T Consensus 646 Ykeald~l~~i 656 (1238)
T KOG1127|consen 646 YKEALDALGLI 656 (1238)
T ss_pred HHHHHHHHHHH
Confidence 55555555443
No 165
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.54 E-value=0.0015 Score=49.16 Aligned_cols=110 Identities=12% Similarity=0.010 Sum_probs=73.7
Q ss_pred hhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcC--cCC----cccHHHHHHHHHcccChhHHHHH
Q 044786 26 SAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMP--LRD----FNSWAVMIVGYVDVADYQECITL 99 (340)
Q Consensus 26 ~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~--~~~----~~~~~~li~~~~~~g~~~~a~~~ 99 (340)
+..+...+..+.+..+-.-....|..+...+...|++++|+..|+... .++ ..+|..+...+...|++++|++.
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 444455555553221333345677788888888999999999999875 222 23688888999999999999999
Q ss_pred HHHHHHhhcCCccccchHHHHHHHHHHhh-------hccchhhHHHHHH
Q 044786 100 FAEMMKRKKGHMLLVFPAWIIVCVLKACV-------CTMNMELGKQVHG 141 (340)
Q Consensus 100 ~~~m~~~~~~~~~~~~~~~~~~~ll~~~~-------~~~~~~~a~~~~~ 141 (340)
+++..... +....++..+...+. ..|+++.|...++
T Consensus 95 ~~~Al~~~------~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 95 YFQALERN------PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHHhC------cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHH
Confidence 99998773 333445555555555 5556555544444
No 166
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.52 E-value=0.009 Score=49.25 Aligned_cols=130 Identities=8% Similarity=-0.001 Sum_probs=60.6
Q ss_pred HHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHc----CCC-CchhHH
Q 044786 81 AVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKL----GSS-RNISLT 155 (340)
Q Consensus 81 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~ 155 (340)
.-....|-..+++++|.+.|.+.............-...|......+.+. ++++|...++...+. |-. .-...+
T Consensus 39 ~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~ 117 (282)
T PF14938_consen 39 EKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCL 117 (282)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHH
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 33445566666777777666665443211100011122333333333333 555665555544321 210 012244
Q ss_pred HHHHHHHHhh-cCHHHHHHHHHHcccC---------ChhhHHHHHHHHhccCchhHHHHHHHHHhh
Q 044786 156 GSLINFYGKF-RCLEDADFVFSQLKRH---------NTVVWTAKIVNNCREGHFHQVFNDFKEMGR 211 (340)
Q Consensus 156 ~~l~~~~~~~-~~~~~a~~~~~~~~~~---------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 211 (340)
..+...|... |++++|.+.|++..+- -..++..+...+.+.|++++|.++|++...
T Consensus 118 ~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 118 KELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4555556665 6666666666654311 122345555666666677777777766654
No 167
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.51 E-value=0.0005 Score=42.86 Aligned_cols=62 Identities=18% Similarity=0.157 Sum_probs=45.5
Q ss_pred hccCCHHHHHHHHHHhhc-CC-cHHHHHHHHHHHHHcCchHHHHHHHHHHHHcCCccchhHHHHHH
Q 044786 265 GKCRLLRDAERVFELIVD-KK-NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLR 328 (340)
Q Consensus 265 ~~~~~~~~A~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll 328 (340)
.+.|++++|.++|+.+.. .| +...+-.+..+|.+.|++++|.++++++... .|+...+..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHHH
Confidence 456888888888888765 34 6777778888888888888888888888766 45555555544
No 168
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.50 E-value=0.014 Score=54.39 Aligned_cols=97 Identities=12% Similarity=0.104 Sum_probs=60.4
Q ss_pred cchhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCc---CCcccHHHHHHH
Q 044786 10 TDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL---RDFNSWAVMIVG 86 (340)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~ 86 (340)
......+.+.|++..+++.|..+.-..-+......-...|....-.|...+++..|..-|+.... .|...|..+..+
T Consensus 526 aeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeA 605 (1238)
T KOG1127|consen 526 AEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEA 605 (1238)
T ss_pred hhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 44566777888888888888887322222100001112233333345666777778777776653 355567778888
Q ss_pred HHcccChhHHHHHHHHHHHh
Q 044786 87 YVDVADYQECITLFAEMMKR 106 (340)
Q Consensus 87 ~~~~g~~~~a~~~~~~m~~~ 106 (340)
|.+.|++..|+++|.+....
T Consensus 606 Y~~sGry~~AlKvF~kAs~L 625 (1238)
T KOG1127|consen 606 YPESGRYSHALKVFTKASLL 625 (1238)
T ss_pred HHhcCceehHHHhhhhhHhc
Confidence 88888888888888777655
No 169
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.49 E-value=0.007 Score=54.09 Aligned_cols=59 Identities=12% Similarity=-0.126 Sum_probs=28.9
Q ss_pred HHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHc
Q 044786 118 WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL 178 (340)
Q Consensus 118 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 178 (340)
..|..+.-.....|++++|...+++..... |+...|..+...+...|+.++|.+.+++.
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A 479 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTA 479 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344444333334455555555555554443 24445555555555555555555555544
No 170
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.45 E-value=0.0036 Score=53.35 Aligned_cols=87 Identities=10% Similarity=0.013 Sum_probs=49.9
Q ss_pred HHHhcCChhHHHHHHhhcCcC---CcccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhcc
Q 044786 55 MHVSCGQLDTARQLFDEMPLR---DFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTM 131 (340)
Q Consensus 55 ~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 131 (340)
.+...|++++|++.|++.... +...|..+..+|.+.|++++|+..+++.+... +.+...|..+..++...|
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~------P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELD------PSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------cCCHHHHHHHHHHHHHhC
Confidence 344556666666666665522 33345555566666666666666666666553 334445555666666666
Q ss_pred chhhHHHHHHHHHHcC
Q 044786 132 NMELGKQVHGLLFKLG 147 (340)
Q Consensus 132 ~~~~a~~~~~~~~~~~ 147 (340)
++++|...|+...+..
T Consensus 85 ~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 85 EYQTAKAALEKGASLA 100 (356)
T ss_pred CHHHHHHHHHHHHHhC
Confidence 6666666666665543
No 171
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.45 E-value=0.0097 Score=53.22 Aligned_cols=139 Identities=6% Similarity=-0.102 Sum_probs=91.8
Q ss_pred CCcccHHHHHHHHHcc-----cChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhcc--------chhhHHHHHH
Q 044786 75 RDFNSWAVMIVGYVDV-----ADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTM--------NMELGKQVHG 141 (340)
Q Consensus 75 ~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~--------~~~~a~~~~~ 141 (340)
.|...|...+++.... ++...|..+|++..+.+ +-....+..+..++.... ++..+.+..+
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld------P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE------PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC------CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 4667888888875432 23678999999999883 233445554444333322 1223333333
Q ss_pred HHHHcC-CCCchhHHHHHHHHHHhhcCHHHHHHHHHHcc--cCChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCCh
Q 044786 142 LLFKLG-SSRNISLTGSLINFYGKFRCLEDADFVFSQLK--RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS 218 (340)
Q Consensus 142 ~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 218 (340)
...... ...+...|..+.-.....|++++|...+++.. .++...|..+...+...|+.++|.+.+++.... .|..
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~ 486 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGE 486 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCC
Confidence 333321 23355677777666667799999999999875 456777888889999999999999999888763 5665
Q ss_pred hhH
Q 044786 219 YTF 221 (340)
Q Consensus 219 ~t~ 221 (340)
.||
T Consensus 487 pt~ 489 (517)
T PRK10153 487 NTL 489 (517)
T ss_pred chH
Confidence 555
No 172
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.45 E-value=0.051 Score=45.37 Aligned_cols=105 Identities=16% Similarity=0.036 Sum_probs=54.3
Q ss_pred HHHHHHHHhccCchhHHHHHHHHHhhcccCCChhhHHHHHHhcccCCchhchHHHHHHHHHHhCCCccHHHHHHHHHHHh
Q 044786 186 WTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYG 265 (340)
Q Consensus 186 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 265 (340)
.+..|.-+...|+...|.++-++.. .|+..-|...+.+++..+++++ ...+. .. +-++.-|..++..|.
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~e-L~~fa---~s---kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDE-LEKFA---KS---KKSPIGYEPFVEACL 248 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHH-HHHHH---hC---CCCCCChHHHHHHHH
Confidence 3444555555566555555544442 3555555666666666666543 22221 11 123355555666666
Q ss_pred ccCCHHHHHHHHHHhhcCCcHHHHHHHHHHHHHcCchHHHHHH
Q 044786 266 KCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKF 308 (340)
Q Consensus 266 ~~~~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 308 (340)
+.|+..+|..+..++. +..-+..|.+.|++.+|.+.
T Consensus 249 ~~~~~~eA~~yI~k~~-------~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 249 KYGNKKEASKYIPKIP-------DEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HCCCHHHHHHHHHhCC-------hHHHHHHHHHCCCHHHHHHH
Confidence 6666666666665532 23345555666666665544
No 173
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.44 E-value=0.0038 Score=47.25 Aligned_cols=110 Identities=8% Similarity=0.001 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHhhcCc--CC----cccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHH
Q 044786 47 LFLNRLLLMHVSCGQLDTARQLFDEMPL--RD----FNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWII 120 (340)
Q Consensus 47 ~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ 120 (340)
..+..+...+...|++++|...|++... ++ ...+..+...+.+.|++++|...+++..... +-+...+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~ 109 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN------PKQPSAL 109 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------cccHHHH
Confidence 3444555555555666666655555441 11 1244555555555566666666665555542 3334444
Q ss_pred HHHHHHhhhccc--------------hhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhc
Q 044786 121 VCVLKACVCTMN--------------MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166 (340)
Q Consensus 121 ~~ll~~~~~~~~--------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 166 (340)
..+...+...|+ +++|.++++.....+.. .|..++..+...|
T Consensus 110 ~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~----~~~~~~~~~~~~~ 165 (172)
T PRK02603 110 NNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPN----NYIEAQNWLKTTG 165 (172)
T ss_pred HHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHhcC
Confidence 444555544443 67777777777766522 1444444444444
No 174
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.42 E-value=0.0039 Score=45.36 Aligned_cols=96 Identities=13% Similarity=0.144 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHhhcCcC---CcccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHH
Q 044786 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLR---DFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVC 122 (340)
Q Consensus 46 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ 122 (340)
....-.+-..+...|++++|..+|+.+..- +..-|-.|.-++-..|++++|+..|......+ +-+...+-.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~------~ddp~~~~~ 108 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK------IDAPQAPWA 108 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC------CCCchHHHH
Confidence 344445566678899999999999988743 34457778888888999999999999998885 567778888
Q ss_pred HHHHhhhccchhhHHHHHHHHHHcC
Q 044786 123 VLKACVCTMNMELGKQVHGLLFKLG 147 (340)
Q Consensus 123 ll~~~~~~~~~~~a~~~~~~~~~~~ 147 (340)
+..++...|+.+.|.+.|+......
T Consensus 109 ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 109 AAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 9999999999999999998777653
No 175
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.37 E-value=0.0016 Score=47.80 Aligned_cols=70 Identities=11% Similarity=0.110 Sum_probs=53.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhc-CC-cHHHHHHHHHHHHHcCchHHHHHHHHHHH-----HcCCccchhHHH
Q 044786 256 VQCGLVDMYGKCRLLRDAERVFELIVD-KK-NIASWNAMLVGYIRNGLYVEATKFLYLMK-----ASGIQIQESLIN 325 (340)
Q Consensus 256 ~~~~li~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~-----~~g~~~~~~t~~ 325 (340)
+...++..+...|+++.|.++.+.+.. .| +...|..+|.+|...|+..+|+++|+++. +.|+.|++.|-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 455678888899999999999999886 34 88899999999999999999999999874 459999987754
No 176
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.36 E-value=0.096 Score=47.54 Aligned_cols=109 Identities=10% Similarity=-0.016 Sum_probs=70.4
Q ss_pred HHHHHHHHhccCchhHHHHHHHHHhhcccCCChhhHHHHHHhcccCCchhchHHHHHHHHHHhCCCccHHHHHHHHHHHh
Q 044786 186 WTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYG 265 (340)
Q Consensus 186 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 265 (340)
.+--+.-+...|+..+|.++-++.+ -||-..|..-+.+++..+++++ .+++ ..+. -.+.-|...+.+|.
T Consensus 687 l~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kwee-Lekf---Aksk---ksPIGy~PFVe~c~ 755 (829)
T KOG2280|consen 687 LHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEE-LEKF---AKSK---KSPIGYLPFVEACL 755 (829)
T ss_pred HHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHH-HHHH---Hhcc---CCCCCchhHHHHHH
Confidence 3444555666677777776666554 4777777777777777777644 3222 2221 12555667778888
Q ss_pred ccCCHHHHHHHHHHhhcCCcHHHHHHHHHHHHHcCchHHHHHHHHH
Q 044786 266 KCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYL 311 (340)
Q Consensus 266 ~~~~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 311 (340)
+.|+.++|.+++.+....+ -...+|.+.|++.+|.++--+
T Consensus 756 ~~~n~~EA~KYiprv~~l~------ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVGGLQ------EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred hcccHHHHhhhhhccCChH------HHHHHHHHhccHHHHHHHHHH
Confidence 8888888888887774322 456677888888877765443
No 177
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.35 E-value=0.048 Score=42.83 Aligned_cols=71 Identities=11% Similarity=0.091 Sum_probs=31.2
Q ss_pred hcCHHHHHHHHHHcccC---ChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCChhhHHHHHHhcccCCchhc
Q 044786 165 FRCLEDADFVFSQLKRH---NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGN 236 (340)
Q Consensus 165 ~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~ 236 (340)
.|++++|.++|+.+.+. |.+++--=+...-..|+.-+|++-+.+..+. +..|...|.-+-..|...|++.+
T Consensus 99 ~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~k 172 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEK 172 (289)
T ss_pred hhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHH
Confidence 34555555555554432 2233333333333344444444444444332 33344555555555555555544
No 178
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.34 E-value=0.0015 Score=40.75 Aligned_cols=64 Identities=19% Similarity=0.134 Sum_probs=40.9
Q ss_pred cccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhcc-chhhHHHHHHHHHHc
Q 044786 77 FNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTM-NMELGKQVHGLLFKL 146 (340)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~ 146 (340)
..+|..+...+...|++++|+..|++..+.. +-+...|..+..++...| ++++|.+.++...+.
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~------p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD------PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS------TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 3456666666667777777777777776663 345556666666666666 566666666665543
No 179
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.33 E-value=0.0019 Score=39.76 Aligned_cols=56 Identities=18% Similarity=0.135 Sum_probs=48.0
Q ss_pred HHHHHhccCCHHHHHHHHHHhhcC-C-cHHHHHHHHHHHHHcCchHHHHHHHHHHHHc
Q 044786 260 LVDMYGKCRLLRDAERVFELIVDK-K-NIASWNAMLVGYIRNGLYVEATKFLYLMKAS 315 (340)
Q Consensus 260 li~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 315 (340)
+...+.+.|++++|.+.|+.+... | +...|..+...+...|++++|..+|++..+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456688899999999999999873 4 7788999999999999999999999998755
No 180
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.32 E-value=0.096 Score=45.78 Aligned_cols=116 Identities=12% Similarity=0.095 Sum_probs=88.1
Q ss_pred hHHHHHHhcccCCchhchHHHHHHHHHHhCCCc-cHHHHHHHHHHHhccCCHHHHHHHHHHhhcC-CcHHHH-HHHHHHH
Q 044786 220 TFSSVLKACGGVDDDGNCGRQMHANIVKIGLES-DEYVQCGLVDMYGKCRLLRDAERVFELIVDK-KNIASW-NAMLVGY 296 (340)
Q Consensus 220 t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-~~~~~~-~~li~~~ 296 (340)
+|...+..-.+...+ +++..+|....+.+..+ ++.+++++|+-||. ++..-|.++|+.-..+ +|...| ...+.-+
T Consensus 368 v~~~~mn~irR~eGl-kaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~d~p~yv~~YldfL 445 (656)
T KOG1914|consen 368 VYCQYMNFIRRAEGL-KAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFGDSPEYVLKYLDFL 445 (656)
T ss_pred ehhHHHHHHHHhhhH-HHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 344455554555555 55889999998888777 88899999988875 7889999999875543 555444 5677778
Q ss_pred HHcCchHHHHHHHHHHHHcCCccch--hHHHHHHHHhhhcCcc
Q 044786 297 IRNGLYVEATKFLYLMKASGIQIQE--SLINDLRIACSSISAS 337 (340)
Q Consensus 297 ~~~~~~~~a~~~~~~m~~~g~~~~~--~t~~~ll~a~~~~g~~ 337 (340)
...++-..|..+|++....++.|+. ..|..+|.-=++.|+.
T Consensus 446 ~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL 488 (656)
T KOG1914|consen 446 SHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDL 488 (656)
T ss_pred HHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccH
Confidence 8889999999999999998777665 6888888877777764
No 181
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.27 E-value=0.0015 Score=40.60 Aligned_cols=52 Identities=25% Similarity=0.153 Sum_probs=38.3
Q ss_pred hhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCc
Q 044786 21 TFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL 74 (340)
Q Consensus 21 ~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 74 (340)
.+.|++++|.++|+.+... .+-+...+..+..+|.+.|++++|.++++.+..
T Consensus 2 l~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3567888888888888766 344677777788888888888888888887774
No 182
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.25 E-value=0.026 Score=44.55 Aligned_cols=140 Identities=11% Similarity=0.073 Sum_probs=100.5
Q ss_pred HHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHH--
Q 044786 80 WAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGS-- 157 (340)
Q Consensus 80 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-- 157 (340)
.+.++..+.-.+.+.-....+++.++.. . +.+......+++...+.||.+.|...|+...+..-..+..+.+.
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~--~---e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V 254 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYY--P---EQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMV 254 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhC--C---cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHH
Confidence 4566777777788888999999998873 2 45666778888999999999999999998776543334434333
Q ss_pred ---HHHHHHhhcCHHHHHHHHHHcccC---ChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCChhhHHHHHH
Q 044786 158 ---LINFYGKFRCLEDADFVFSQLKRH---NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226 (340)
Q Consensus 158 ---l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~ 226 (340)
....|.-++++.+|...|+++... +++.-|.-.-+..-.|+..+|++.++.|.+. .|...+-++++-
T Consensus 255 ~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~~~ 327 (366)
T KOG2796|consen 255 LMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESVLF 327 (366)
T ss_pred HhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhHHH
Confidence 334566678888999999887754 4455555444555578999999999999885 465555554443
No 183
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.23 E-value=0.02 Score=40.06 Aligned_cols=108 Identities=8% Similarity=-0.085 Sum_probs=58.5
Q ss_pred HHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCC--chhHHHHHHH
Q 044786 83 MIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSR--NISLTGSLIN 160 (340)
Q Consensus 83 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~ 160 (340)
+..++-..|+.++|+.+|++.... |++. ..-...+..+..++...|++++|..+++........+ +......+.-
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~--gL~~-~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al 83 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAA--GLSG-ADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLAL 83 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHc--CCCc-hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHH
Confidence 344556677777777777777776 3310 1113355566677777777777777777666543220 1111222233
Q ss_pred HHHhhcCHHHHHHHHHHcccCChhhHHHHHHHH
Q 044786 161 FYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNN 193 (340)
Q Consensus 161 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~ 193 (340)
++...|+.++|.+.+-...-++...|.--|..|
T Consensus 84 ~L~~~gr~~eAl~~~l~~la~~~~~y~ra~~~y 116 (120)
T PF12688_consen 84 ALYNLGRPKEALEWLLEALAETLPRYRRAIRFY 116 (120)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666665554444433444333333
No 184
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.22 E-value=0.0082 Score=50.32 Aligned_cols=284 Identities=9% Similarity=-0.046 Sum_probs=141.9
Q ss_pred cchhHHHHH--HhhhccchhhHHHHHHHHHhhcCCCCC----HHHHHHHHHHHHhcCChhHHHHHHhhcC-------cC-
Q 044786 10 TDMYTCLIK--ECTFQKDSAGAFELLNHIRKRVNIKPT----LLFLNRLLLMHVSCGQLDTARQLFDEMP-------LR- 75 (340)
Q Consensus 10 ~~~~~~li~--~~~~~~~~~~a~~~~~~m~~~~g~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~-------~~- 75 (340)
...|...+. -+|+.|+......+|+...+. |-. | ..+|..|-++|.-.+++++|+++...=. .+
T Consensus 15 ~SCleLalEGERLck~gdcraGv~ff~aA~qv-GTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdkl 92 (639)
T KOG1130|consen 15 RSCLELALEGERLCKMGDCRAGVDFFKAALQV-GTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKL 92 (639)
T ss_pred hHHHHHHHHHHHHHhccchhhhHHHHHHHHHh-cch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchh
Confidence 344444444 368999999999999999988 643 3 3456777778888889999988753211 11
Q ss_pred -CcccHHHHHHHHHcccChhHHHHHHHH----HHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCC
Q 044786 76 -DFNSWAVMIVGYVDVADYQECITLFAE----MMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSR 150 (340)
Q Consensus 76 -~~~~~~~li~~~~~~g~~~~a~~~~~~----m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 150 (340)
...+...|-..+--.|.+++|+.+-.+ ..+.+.. ......+..+...|...|..-.... -.+.|-.+
T Consensus 93 GEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDr----v~e~RAlYNlgnvYhakGk~~g~~~----pee~g~f~ 164 (639)
T KOG1130|consen 93 GEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDR----VLESRALYNLGNVYHAKGKCTGLEA----PEEKGAFN 164 (639)
T ss_pred ccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHH----HhhhHHHhhhhhhhhhcccccCCCC----hhhccccc
Confidence 122333344455556777776654332 2222211 2445566667777665553210000 00001111
Q ss_pred chhHHHHHHHHHHhhcCHHHHHHHHHH-------cccC--ChhhHHHHHHHHhccCchhHHHHHHHHHh----hcccCC-
Q 044786 151 NISLTGSLINFYGKFRCLEDADFVFSQ-------LKRH--NTVVWTAKIVNNCREGHFHQVFNDFKEMG----RERIKK- 216 (340)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~~~a~~~~~~-------~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~----~~~~~p- 216 (340)
..++ ..++.|.+.|.+ ...+ -...|..|...|.-.|++++|+..-+.=. +-|-+.
T Consensus 165 ~ev~-----------~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAa 233 (639)
T KOG1130|consen 165 AEVT-----------SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAA 233 (639)
T ss_pred HHHH-----------HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHH
Confidence 1100 001111222111 1111 11234444445555555555554433211 111111
Q ss_pred ChhhHHHHHHhcccCCchhchHHHHH---HHHHHhCC-CccHHHHHHHHHHHhccCCHHHHHHHHHHhhc--------CC
Q 044786 217 NSYTFSSVLKACGGVDDDGNCGRQMH---ANIVKIGL-ESDEYVQCGLVDMYGKCRLLRDAERVFELIVD--------KK 284 (340)
Q Consensus 217 ~~~t~~~ll~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--------~~ 284 (340)
....+..+-.++.-.|.++.+++.+. ...++.|- .....+.-+|-..|.-..+++.|..++++-.. -.
T Consensus 234 eRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriG 313 (639)
T KOG1130|consen 234 ERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIG 313 (639)
T ss_pred HHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 11234444455555555543222211 11122221 12344555666667666777778777765432 14
Q ss_pred cHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Q 044786 285 NIASWNAMLVGYIRNGLYVEATKFLYLMKA 314 (340)
Q Consensus 285 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 314 (340)
....+.+|..+|...|..++|+...+.-.+
T Consensus 314 e~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 314 ELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 556777888888888888888877665443
No 185
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.22 E-value=0.0034 Score=39.16 Aligned_cols=63 Identities=17% Similarity=0.177 Sum_probs=54.1
Q ss_pred cHHHHHHHHHHHhccCCHHHHHHHHHHhhc--CCcHHHHHHHHHHHHHcC-chHHHHHHHHHHHHc
Q 044786 253 DEYVQCGLVDMYGKCRLLRDAERVFELIVD--KKNIASWNAMLVGYIRNG-LYVEATKFLYLMKAS 315 (340)
Q Consensus 253 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~ 315 (340)
++.+|..+-..+.+.|++++|...|++... +.+...|..+..+|.+.| ++++|++.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 456788888999999999999999999876 347788999999999999 799999999887653
No 186
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.19 E-value=0.082 Score=42.42 Aligned_cols=194 Identities=12% Similarity=0.112 Sum_probs=98.5
Q ss_pred HHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHH
Q 044786 82 VMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINF 161 (340)
Q Consensus 82 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 161 (340)
.....+...|++++|.+.|+++.....+. +.-....-.+..++.+.+++++|...+++..+..+.....-|...+.+
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s---~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g 113 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFG---PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRG 113 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHH
Confidence 34445566788888888888888773111 111112245566777777788888777777766443322233222222
Q ss_pred HHhhcCHHHHHHHHHHcccCChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCChhhHHHHHHhcccCCchhchHHH-
Q 044786 162 YGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQ- 240 (340)
Q Consensus 162 ~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~- 240 (340)
.+.... ....+......+. .........+|+..|+++++. -|+.. -..+ +..
T Consensus 114 ~~~~~~---~~~~~~~~~~~~~--------~~rD~~~~~~A~~~~~~li~~--yP~S~-------------ya~~-A~~r 166 (243)
T PRK10866 114 LTNMAL---DDSALQGFFGVDR--------SDRDPQHARAAFRDFSKLVRG--YPNSQ-------------YTTD-ATKR 166 (243)
T ss_pred Hhhhhc---chhhhhhccCCCc--------cccCHHHHHHHHHHHHHHHHH--CcCCh-------------hHHH-HHHH
Confidence 221000 0000000000000 000001123455555555553 23321 1112 221
Q ss_pred ---HHHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhcC-C----cHHHHHHHHHHHHHcCchHHHHHHHHHH
Q 044786 241 ---MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK-K----NIASWNAMLVGYIRNGLYVEATKFLYLM 312 (340)
Q Consensus 241 ---~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-~----~~~~~~~li~~~~~~~~~~~a~~~~~~m 312 (340)
+.+.+.+.. -.+...|.+.|.+..|..-++.+..+ | .......++.+|...|..++|.++...+
T Consensus 167 l~~l~~~la~~e--------~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 167 LVFLKDRLAKYE--------LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHHHH--------HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 222222211 14566688888888888888777753 2 3445667778888889888888877665
Q ss_pred H
Q 044786 313 K 313 (340)
Q Consensus 313 ~ 313 (340)
.
T Consensus 239 ~ 239 (243)
T PRK10866 239 A 239 (243)
T ss_pred h
Confidence 4
No 187
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.19 E-value=0.002 Score=39.65 Aligned_cols=56 Identities=13% Similarity=0.041 Sum_probs=29.3
Q ss_pred HHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHc
Q 044786 85 VGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKL 146 (340)
Q Consensus 85 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 146 (340)
..+...|++++|.+.|++..+.. +-+...+..+..++...|++++|...|+.+.+.
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD------PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS------TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34455555555555555555542 224445555555555555555555555555443
No 188
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.14 E-value=0.016 Score=40.51 Aligned_cols=104 Identities=8% Similarity=-0.064 Sum_probs=69.7
Q ss_pred HHHHHhhhccchhhHHHHHHHHHHcCCCCc--hhHHHHHHHHHHhhcCHHHHHHHHHHccc--CC----hhhHHHHHHHH
Q 044786 122 CVLKACVCTMNMELGKQVHGLLFKLGSSRN--ISLTGSLINFYGKFRCLEDADFVFSQLKR--HN----TVVWTAKIVNN 193 (340)
Q Consensus 122 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~----~~~~~~li~~~ 193 (340)
.+..++-..|+.++|..+|+.....|+... ...+-.+...|...|++++|..++++... |+ ......+..++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 344566678899999999999999887654 33555677788888899999888887653 22 12222233466
Q ss_pred hccCchhHHHHHHHHHhhcccCCChhhHHHHHHhcc
Q 044786 194 CREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229 (340)
Q Consensus 194 ~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~ 229 (340)
...|+.++|+..+-.... ++...|..-|..|+
T Consensus 86 ~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALA----ETLPRYRRAIRFYA 117 (120)
T ss_pred HHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 678888888888766543 33335655555543
No 189
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.06 E-value=0.003 Score=40.57 Aligned_cols=67 Identities=7% Similarity=-0.003 Sum_probs=44.6
Q ss_pred cHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccch-HHHHHHHHHHhhhccchhhHHHHHHHHHH
Q 044786 79 SWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFK 145 (340)
Q Consensus 79 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 145 (340)
+|+.+...|...|++++|+..|++..+.......-.|. ..++..+...+...|++++|.+.+++..+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 56777788888888888888888877552111111232 55777777788888888888887776543
No 190
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.05 E-value=0.15 Score=42.72 Aligned_cols=86 Identities=9% Similarity=0.168 Sum_probs=65.6
Q ss_pred hhHHHHHHhcccCCchhchHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhcCCcHHHHHHHHHHHHH
Q 044786 219 YTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIR 298 (340)
Q Consensus 219 ~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~li~~~~~ 298 (340)
.+.+..|.-+...|.... |..+... .. -|+..-|...+.+|+..+++++-+++... +..+.-|..++.+|.+
T Consensus 178 ~Sl~~Ti~~li~~~~~k~-A~kl~k~---Fk-v~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQ-AEKLKKE---FK-VPDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLK 249 (319)
T ss_pred CCHHHHHHHHHHCCCHHH-HHHHHHH---cC-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHH
Confidence 345555666666776533 5555433 33 47889999999999999999998887653 4566889999999999
Q ss_pred cCchHHHHHHHHHH
Q 044786 299 NGLYVEATKFLYLM 312 (340)
Q Consensus 299 ~~~~~~a~~~~~~m 312 (340)
.|+..+|..+..++
T Consensus 250 ~~~~~eA~~yI~k~ 263 (319)
T PF04840_consen 250 YGNKKEASKYIPKI 263 (319)
T ss_pred CCCHHHHHHHHHhC
Confidence 99999999988874
No 191
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.04 E-value=0.05 Score=43.04 Aligned_cols=131 Identities=13% Similarity=0.048 Sum_probs=76.9
Q ss_pred hhHHHHHHHHhccCchhHHHHHHHHHhhcccCCChhhHHHHHHhcccCCchhchHHHHHHHHHHhCCCccHHHHHHHHH-
Q 044786 184 VVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVD- 262 (340)
Q Consensus 184 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~- 262 (340)
.+.+.++....-.|.+.-...++++..+...+-++...+.+...-.+.|+. ++++..++...+..-+.+..+.+.++.
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~-k~a~~yf~~vek~~~kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDI-KTAEKYFQDVEKVTQKLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccH-HHHHHHHHHHHHHHhhhhccchhHHHHh
Confidence 344556666666667777777777776654444555556666666677776 446666666655544444444444333
Q ss_pred ----HHhccCCHHHHHHHHHHhhc--CCcHHHHHHHHHHHHHcCchHHHHHHHHHHHHc
Q 044786 263 ----MYGKCRLLRDAERVFELIVD--KKNIASWNAMLVGYIRNGLYVEATKFLYLMKAS 315 (340)
Q Consensus 263 ----~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 315 (340)
.|.-++++..|...+.++.. +.|+..-|.-.-+..-.|+..+|++.++.|.+.
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33445666777777766654 234444444433444456777777777777655
No 192
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.03 E-value=0.0043 Score=39.83 Aligned_cols=61 Identities=20% Similarity=0.203 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhhc-----C---Cc-HHHHHHHHHHHHHcCchHHHHHHHHHHHH
Q 044786 254 EYVQCGLVDMYGKCRLLRDAERVFELIVD-----K---KN-IASWNAMLVGYIRNGLYVEATKFLYLMKA 314 (340)
Q Consensus 254 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~-----~---~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 314 (340)
..+|+.+...|...|++++|...|++... . |+ ..+++.+...|...|++++|++.+++-.+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45788899999999999999999988764 1 33 56788899999999999999999988643
No 193
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.02 E-value=0.25 Score=44.81 Aligned_cols=125 Identities=12% Similarity=0.008 Sum_probs=68.2
Q ss_pred CCCcchhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHH------HHHHhcCChhHHHHHHhhcCcCCcccH
Q 044786 7 PITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLL------LMHVSCGQLDTARQLFDEMPLRDFNSW 80 (340)
Q Consensus 7 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li------~~~~~~~~~~~a~~~~~~~~~~~~~~~ 80 (340)
.|-+..|..+.......-.++.|...|-+.....|++.-...-...- ..-+--|++++|++++-++..+|..
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrDLA-- 766 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDLA-- 766 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhhh--
Confidence 46677888888887777788888888877665444432111111111 1122348899999998888877654
Q ss_pred HHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHH
Q 044786 81 AVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVH 140 (340)
Q Consensus 81 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 140 (340)
|..+.+.|+|-.+.++++. .+ +-..-..-...|+.+...++....+++|.+.|
T Consensus 767 ---ielr~klgDwfrV~qL~r~---g~-~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY 819 (1189)
T KOG2041|consen 767 ---IELRKKLGDWFRVYQLIRN---GG-SDDDDEGKEDAFRNIGETFAEMMEWEEAAKYY 819 (1189)
T ss_pred ---HHHHHhhhhHHHHHHHHHc---cC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666555554432 11 11000112234555555555555555555444
No 194
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.01 E-value=0.062 Score=40.20 Aligned_cols=154 Identities=9% Similarity=0.044 Sum_probs=106.5
Q ss_pred HHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCc----CCcccHHHHHHHHHccc
Q 044786 16 LIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL----RDFNSWAVMIVGYVDVA 91 (340)
Q Consensus 16 li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~g 91 (340)
+..+..+.=|.+....=...-. ...|+...--.|.....+.|+..+|...|++... .|....-.+.++....+
T Consensus 62 ~~~a~~q~ldP~R~~Rea~~~~---~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~ 138 (251)
T COG4700 62 LLMALQQKLDPERHLREATEEL---AIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQ 138 (251)
T ss_pred HHHHHHHhcChhHHHHHHHHHH---hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhc
Confidence 3444444445544433222222 4577888888888999999999999999988763 46666667778888889
Q ss_pred ChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHH
Q 044786 92 DYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171 (340)
Q Consensus 92 ~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 171 (340)
++..|...++.+.+.. +..-.|| +.-.+.+.+...|.+.+|..-|+.....-..|....|. ...+.+.|+.+++
T Consensus 139 ~~A~a~~tLe~l~e~~--pa~r~pd--~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y--~e~La~qgr~~ea 212 (251)
T COG4700 139 EFAAAQQTLEDLMEYN--PAFRSPD--GHLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYY--AEMLAKQGRLREA 212 (251)
T ss_pred cHHHHHHHHHHHhhcC--CccCCCC--chHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHH--HHHHHHhcchhHH
Confidence 9999999999988773 2112333 34566788888999999999999999886666555544 3456778877776
Q ss_pred HHHHHHc
Q 044786 172 DFVFSQL 178 (340)
Q Consensus 172 ~~~~~~~ 178 (340)
..-+.++
T Consensus 213 ~aq~~~v 219 (251)
T COG4700 213 NAQYVAV 219 (251)
T ss_pred HHHHHHH
Confidence 5544443
No 195
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.99 E-value=0.013 Score=47.08 Aligned_cols=99 Identities=12% Similarity=0.084 Sum_probs=75.9
Q ss_pred HhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHcccCC---hhhHHHHHHHHhccCchhHH
Q 044786 126 ACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN---TVVWTAKIVNNCREGHFHQV 202 (340)
Q Consensus 126 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a 202 (340)
-..+.+++.+|...|.+..+.... |.+.|..=..+|++.|.++.|.+-.+....-| ..+|..|-.+|...|++++|
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 345667888888888888877644 66667777888888898888888777766544 34688888899999999999
Q ss_pred HHHHHHHhhcccCCChhhHHHHHHh
Q 044786 203 FNDFKEMGRERIKKNSYTFSSVLKA 227 (340)
Q Consensus 203 ~~~~~~m~~~~~~p~~~t~~~ll~~ 227 (340)
++.|++..+ +.|+-.+|-.=|..
T Consensus 169 ~~aykKaLe--ldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHhhhc--cCCCcHHHHHHHHH
Confidence 999888877 67887777655544
No 196
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.98 E-value=0.015 Score=47.09 Aligned_cols=83 Identities=8% Similarity=-0.057 Sum_probs=37.8
Q ss_pred ccchhhHHHHHHHHHHcCCCCc--hhHHHHHHHHHHhhcCHHHHHHHHHHccc--C----ChhhHHHHHHHHhccCchhH
Q 044786 130 TMNMELGKQVHGLLFKLGSSRN--ISLTGSLINFYGKFRCLEDADFVFSQLKR--H----NTVVWTAKIVNNCREGHFHQ 201 (340)
Q Consensus 130 ~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~----~~~~~~~li~~~~~~~~~~~ 201 (340)
.|++++|...|+.+.+..+... ...+..+...|...|++++|...|+.+.+ | ....+-.+...+...|+.++
T Consensus 156 ~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~ 235 (263)
T PRK10803 156 KSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAK 235 (263)
T ss_pred cCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHH
Confidence 3444444444444444322111 12333444555555555555555555442 1 11223333444555666666
Q ss_pred HHHHHHHHhhc
Q 044786 202 VFNDFKEMGRE 212 (340)
Q Consensus 202 a~~~~~~m~~~ 212 (340)
|..+|+++.+.
T Consensus 236 A~~~~~~vi~~ 246 (263)
T PRK10803 236 AKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHHH
Confidence 66666666553
No 197
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.98 E-value=0.0059 Score=44.77 Aligned_cols=71 Identities=11% Similarity=0.128 Sum_probs=52.5
Q ss_pred cHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHH-----HcCCCCchh
Q 044786 79 SWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLF-----KLGSSRNIS 153 (340)
Q Consensus 79 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~ 153 (340)
....++..+...|++++|.++.+.+.... +.+...|..+|.++...|+...|.+.|+.+. +.|+.|+..
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d------P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD------PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS------TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 45556777788999999999999999885 6778899999999999999999999998764 358888876
Q ss_pred HH
Q 044786 154 LT 155 (340)
Q Consensus 154 ~~ 155 (340)
+-
T Consensus 138 ~~ 139 (146)
T PF03704_consen 138 TR 139 (146)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 198
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.92 E-value=0.017 Score=46.71 Aligned_cols=97 Identities=9% Similarity=-0.014 Sum_probs=47.0
Q ss_pred HHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCC--CchhHHHH
Q 044786 80 WAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSS--RNISLTGS 157 (340)
Q Consensus 80 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ 157 (340)
|+..+..+.+.|++++|...|+.+.+....- ......+..+...+...|++++|...|+.+.+.-.. .....+-.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s---~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDS---TYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 4444433344555666666666655552000 001234455555555666666666666555543211 12223333
Q ss_pred HHHHHHhhcCHHHHHHHHHHcc
Q 044786 158 LINFYGKFRCLEDADFVFSQLK 179 (340)
Q Consensus 158 l~~~~~~~~~~~~a~~~~~~~~ 179 (340)
+...+...|+.++|...|+.+.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi 244 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVI 244 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 4445555566666666666554
No 199
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.85 E-value=0.015 Score=46.67 Aligned_cols=101 Identities=8% Similarity=-0.009 Sum_probs=72.3
Q ss_pred HHHhcCChhHHHHHHhhcC---cCCcccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhcc
Q 044786 55 MHVSCGQLDTARQLFDEMP---LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTM 131 (340)
Q Consensus 55 ~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 131 (340)
-+.+.+++.+|+..|.... ..|.+-|..=..+|++.|.++.|++-.+..+..+ +....+|..|..++...|
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD------p~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID------PHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC------hHHHHHHHHHHHHHHccC
Confidence 3567788888888887765 2466667777778888888888888777777664 445568888888888888
Q ss_pred chhhHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 044786 132 NMELGKQVHGLLFKLGSSRNISLTGSLINFYG 163 (340)
Q Consensus 132 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 163 (340)
++++|.+.|+..++.. |+..+|-.=+....
T Consensus 164 k~~~A~~aykKaLeld--P~Ne~~K~nL~~Ae 193 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELD--PDNESYKSNLKIAE 193 (304)
T ss_pred cHHHHHHHHHhhhccC--CCcHHHHHHHHHHH
Confidence 8888888888888874 44456655444443
No 200
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.77 E-value=0.047 Score=38.64 Aligned_cols=48 Identities=17% Similarity=0.099 Sum_probs=27.5
Q ss_pred CcHHHHHHHHHHHHHcCchHHHHHHHHHHHHc-CCccchhHHHHHHHHh
Q 044786 284 KNIASWNAMLVGYIRNGLYVEATKFLYLMKAS-GIQIQESLINDLRIAC 331 (340)
Q Consensus 284 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~~~~~t~~~ll~a~ 331 (340)
|+..+..+++.+|+..+++..|+++++..... ++..+..+|..|+.=+
T Consensus 50 Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 50 PTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 45555666666666666666666666654333 5555555666555533
No 201
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.71 E-value=0.029 Score=39.68 Aligned_cols=52 Identities=8% Similarity=-0.013 Sum_probs=28.9
Q ss_pred CCcccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhc
Q 044786 75 RDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCT 130 (340)
Q Consensus 75 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~ 130 (340)
|+..+..+++.+|+..|++..|+++++...+.- ++ +.+..+|..|+..+...
T Consensus 50 Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y-~I---~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 50 PTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY-PI---PIPKEFWRRLLEWAYVL 101 (126)
T ss_pred CCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc-CC---CCCHHHHHHHHHHHHHh
Confidence 344455566666666666666666666665554 33 44455566655555433
No 202
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.70 E-value=0.014 Score=36.77 Aligned_cols=61 Identities=16% Similarity=0.110 Sum_probs=49.9
Q ss_pred HHHhccCCHHHHHHHHHHhhc--CCcHHHHHHHHHHHHHcCchHHHHHHHHHHHHcCCccchhHH
Q 044786 262 DMYGKCRLLRDAERVFELIVD--KKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLI 324 (340)
Q Consensus 262 ~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~ 324 (340)
..|.+.+++++|.++++.+.. +.++..|......+.+.|++++|.+.|++..+.+ |+..+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~--p~~~~~ 65 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS--PDDPDA 65 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC--CCcHHH
Confidence 567889999999999999886 3467778888899999999999999999998664 444433
No 203
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.39 Score=42.05 Aligned_cols=221 Identities=10% Similarity=0.039 Sum_probs=133.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHhhcCcC--CcccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCc--cccchHHHHHHHH
Q 044786 49 LNRLLLMHVSCGQLDTARQLFDEMPLR--DFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM--LLVFPAWIIVCVL 124 (340)
Q Consensus 49 ~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~~~~~~ll 124 (340)
...+.++..+..+++.|++-+.....- ++.-++....+|...|.+.++...-+...+.| +.. .+..-...+..+.
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~g-re~rad~klIak~~~r~g 305 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVG-RELRADYKLIAKALARLG 305 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHh-HHHHHHHHHHHHHHHHhh
Confidence 456777777778888888888776643 33346666777888888877777766666554 110 0011112223344
Q ss_pred HHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHcc--cCChh-hHHHHHHHHhccCchhH
Q 044786 125 KACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK--RHNTV-VWTAKIVNNCREGHFHQ 201 (340)
Q Consensus 125 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~-~~~~li~~~~~~~~~~~ 201 (340)
.++.+.++++.+...|...+.....|+. ..+....+++....+... .|... -...=...+.+.|++..
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~ 376 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPE 376 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHH
Confidence 4666677888888888886665544443 223333444444443322 22211 11222567788999999
Q ss_pred HHHHHHHHhhcccCCChhhHHHHHHhcccCCchhchHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhh
Q 044786 202 VFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIV 281 (340)
Q Consensus 202 a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 281 (340)
|+..|.++.+.. +-|...|+.--.+|.+.+.+.++...... ..+. -++....|.-=..++....+++.|.+.|++..
T Consensus 377 Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~-~ieL-~p~~~kgy~RKg~al~~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 377 AVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKK-CIEL-DPNFIKAYLRKGAALRAMKEYDKALEAYQEAL 453 (539)
T ss_pred HHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHH-HHhc-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998864 34577899988899999998764444322 2222 12233344333444555667888888888877
Q ss_pred c
Q 044786 282 D 282 (340)
Q Consensus 282 ~ 282 (340)
.
T Consensus 454 e 454 (539)
T KOG0548|consen 454 E 454 (539)
T ss_pred h
Confidence 5
No 204
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.68 E-value=0.21 Score=38.92 Aligned_cols=55 Identities=18% Similarity=0.153 Sum_probs=27.4
Q ss_pred HhhhccchhhHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhcCChhHHHHHHhhcC
Q 044786 19 ECTFQKDSAGAFELLNHIRKRVNIKP-TLLFLNRLLLMHVSCGQLDTARQLFDEMP 73 (340)
Q Consensus 19 ~~~~~~~~~~a~~~~~~m~~~~g~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 73 (340)
.+...|++.+|.+.|+.+...+.-.| -....-.+..++-+.|+++.|...|+++.
T Consensus 14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi 69 (203)
T PF13525_consen 14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFI 69 (203)
T ss_dssp HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34456666666666666665421111 12333344555556666666666665554
No 205
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.62 E-value=0.15 Score=41.24 Aligned_cols=99 Identities=9% Similarity=-0.099 Sum_probs=76.0
Q ss_pred cchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhc---CHHHHHHHHHHcccC---ChhhHH
Q 044786 114 VFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR---CLEDADFVFSQLKRH---NTVVWT 187 (340)
Q Consensus 114 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~---~~~~~~ 187 (340)
+-|...|-.|..+|...|+.+.|..-|....+...+ ++..+..+.+++.... .-.++..+|+++... |+.+..
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 567788999999999999999999999888776432 5556666666555443 256788899988644 566677
Q ss_pred HHHHHHhccCchhHHHHHHHHHhhcc
Q 044786 188 AKIVNNCREGHFHQVFNDFKEMGRER 213 (340)
Q Consensus 188 ~li~~~~~~~~~~~a~~~~~~m~~~~ 213 (340)
.+-..+...|++.+|...|+.|.+..
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 77888889999999999999998863
No 206
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.60 E-value=0.047 Score=46.00 Aligned_cols=247 Identities=12% Similarity=0.012 Sum_probs=144.6
Q ss_pred HHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHH--HH--cCCC-CchhHHHHHHH
Q 044786 86 GYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLL--FK--LGSS-RNISLTGSLIN 160 (340)
Q Consensus 86 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~--~~--~~~~-~~~~~~~~l~~ 160 (340)
-+++.|+....+.+|+..++. |...+..-+.+|..|.++|.-.+++++|+++...= +. .|-+ -.......|.+
T Consensus 26 RLck~gdcraGv~ff~aA~qv--GTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQV--GTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHhccchhhhHHHHHHHHHh--cchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 368889999999999999888 44444555667888888999999999999876431 11 1110 01122333444
Q ss_pred HHHhhcCHHHHHHHHHH-c------ccC--ChhhHHHHHHHHhccCc--------------------hhHHHHHHHHHh-
Q 044786 161 FYGKFRCLEDADFVFSQ-L------KRH--NTVVWTAKIVNNCREGH--------------------FHQVFNDFKEMG- 210 (340)
Q Consensus 161 ~~~~~~~~~~a~~~~~~-~------~~~--~~~~~~~li~~~~~~~~--------------------~~~a~~~~~~m~- 210 (340)
.+--.|.+++|...-.+ + -.+ ....+-.+...|...|+ ++.|.++|.+=.
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~ 183 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE 183 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 45555666665443221 1 111 12233344444544332 334445544321
Q ss_pred ---hcccCC-ChhhHHHHHHhcccCCchhchHHHHHHH----HHHhCCCc-cHHHHHHHHHHHhccCCHHHHHHHHHHhh
Q 044786 211 ---RERIKK-NSYTFSSVLKACGGVDDDGNCGRQMHAN----IVKIGLES-DEYVQCGLVDMYGKCRLLRDAERVFELIV 281 (340)
Q Consensus 211 ---~~~~~p-~~~t~~~ll~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 281 (340)
+.|-.. -...|..+-..|--.|+++. +...++. ..+.|-+. ....+..|-.++.-.|+++.|.+.++.-.
T Consensus 184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~-ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl 262 (639)
T KOG1130|consen 184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQ-AIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTL 262 (639)
T ss_pred HHHHhhhHHhhcchhcccCceeeeeccHHH-HHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHH
Confidence 111111 12356666666777788865 4444432 22333332 34567778888888999999999887643
Q ss_pred c------C--CcHHHHHHHHHHHHHcCchHHHHHHHHHHHHc-----CCccchhHHHHHHHHhhhcC
Q 044786 282 D------K--KNIASWNAMLVGYIRNGLYVEATKFLYLMKAS-----GIQIQESLINDLRIACSSIS 335 (340)
Q Consensus 282 ~------~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g~~~~~~t~~~ll~a~~~~g 335 (340)
. . ....+.-+|.++|.-..++++|+.++.+-..- ...-....+.+|=.++...|
T Consensus 263 ~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg 329 (639)
T KOG1130|consen 263 NLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALG 329 (639)
T ss_pred HHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhh
Confidence 2 1 24456667888888889999999887764221 22334466777777776665
No 207
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.57 E-value=0.42 Score=41.09 Aligned_cols=119 Identities=13% Similarity=0.068 Sum_probs=75.0
Q ss_pred HHhccCc-hhHHHHHHHHHhhcccCC-ChhhHHHH----HHhcccC---CchhchHHHHHHHHHHhCCCc----cHHHHH
Q 044786 192 NNCREGH-FHQVFNDFKEMGRERIKK-NSYTFSSV----LKACGGV---DDDGNCGRQMHANIVKIGLES----DEYVQC 258 (340)
Q Consensus 192 ~~~~~~~-~~~a~~~~~~m~~~~~~p-~~~t~~~l----l~~~~~~---~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 258 (340)
-+.+.|. -++|+++++...+ +.| |...-+.+ =.+|.+. ..+.+ ...+-..+...|++| +...-|
T Consensus 388 ~lW~~g~~dekalnLLk~il~--ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~r-LlkLe~fi~e~gl~~i~i~e~eian 464 (549)
T PF07079_consen 388 HLWEIGQCDEKALNLLKLILQ--FTNYDIECENIVFLFVKQAYKQALSMHAIPR-LLKLEDFITEVGLTPITISEEEIAN 464 (549)
T ss_pred HHHhcCCccHHHHHHHHHHHH--hccccHHHHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHhcCCCcccccHHHHHH
Confidence 3444454 7788888888776 233 22222222 2223221 12222 344555667788887 344445
Q ss_pred HHHHH--HhccCCHHHHHHHHHHhhc-CCcHHHHHHHHHHHHHcCchHHHHHHHHHHH
Q 044786 259 GLVDM--YGKCRLLRDAERVFELIVD-KKNIASWNAMLVGYIRNGLYVEATKFLYLMK 313 (340)
Q Consensus 259 ~li~~--~~~~~~~~~A~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 313 (340)
.|-++ +...|++.++.-.-.-+.. .|++.+|..+.-++....++++|..++..+.
T Consensus 465 ~LaDAEyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 465 FLADAEYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 55443 3467888888766555544 5899999999999999999999999998874
No 208
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.52 E-value=0.013 Score=36.86 Aligned_cols=56 Identities=11% Similarity=0.072 Sum_probs=30.8
Q ss_pred HHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcC
Q 044786 86 GYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLG 147 (340)
Q Consensus 86 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 147 (340)
.|.+.+++++|.++++.+...+ +.+...+......+.+.|++++|.+.++...+.+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~------p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD------PDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC------cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 4455556666666666665553 3344455555555555556666655555555443
No 209
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.45 E-value=0.25 Score=37.12 Aligned_cols=65 Identities=6% Similarity=-0.184 Sum_probs=31.0
Q ss_pred cchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHc
Q 044786 114 VFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL 178 (340)
Q Consensus 114 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 178 (340)
.|+...-..|..+....|+..+|...|++...--+-.|....-.+.++....++...|...++++
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l 150 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDL 150 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 34444444445555555555555555555544444444444444444444444444444444443
No 210
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.39 E-value=0.078 Score=46.46 Aligned_cols=159 Identities=9% Similarity=-0.021 Sum_probs=89.8
Q ss_pred HhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCcCCcccHHHHHHHHHcccChhHHHH
Q 044786 19 ECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECIT 98 (340)
Q Consensus 19 ~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 98 (340)
...-.++++.+.++.+.-.-...++ ..-.+.++.-+-+.|-.+.|+++-.+- ..-.....+.|+.+.|.+
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~--------~~rFeLAl~lg~L~~A~~ 339 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDP--------DHRFELALQLGNLDIALE 339 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-H--------HHHHHHHHHCT-HHHHHH
T ss_pred HHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCCh--------HHHhHHHHhcCCHHHHHH
Confidence 3345677888776664211110122 445677777788888888888774332 223344556777777766
Q ss_pred HHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHc
Q 044786 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL 178 (340)
Q Consensus 99 ~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 178 (340)
+.++ ..+...|..|...+.+.|+++-|++.|+... -+..|+-.|.-.|+.++..++.+..
T Consensus 340 ~a~~-----------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~~a 399 (443)
T PF04053_consen 340 IAKE-----------LDDPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLAKIA 399 (443)
T ss_dssp HCCC-----------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHh-----------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHHHHH
Confidence 5433 3456677888888888888888877776543 2445666677777777777766665
Q ss_pred ccCChhhHHHHHHHHhccCchhHHHHHHHHH
Q 044786 179 KRHNTVVWTAKIVNNCREGHFHQVFNDFKEM 209 (340)
Q Consensus 179 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 209 (340)
..++- +|....++.-.|+.++..+++.+-
T Consensus 400 ~~~~~--~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 400 EERGD--INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHTT---HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHccC--HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 54432 455555666677777777776554
No 211
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.37 E-value=0.73 Score=41.57 Aligned_cols=22 Identities=18% Similarity=0.238 Sum_probs=14.0
Q ss_pred HHHHHcCchHHHHHHHHHHHHc
Q 044786 294 VGYIRNGLYVEATKFLYLMKAS 315 (340)
Q Consensus 294 ~~~~~~~~~~~a~~~~~~m~~~ 315 (340)
.+|.+.|+-.+|..+++++...
T Consensus 825 kAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 825 KAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred HHHHHhcchHHHHHHHHHhhhh
Confidence 3566667777777777766544
No 212
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.30 E-value=0.076 Score=42.92 Aligned_cols=101 Identities=7% Similarity=-0.098 Sum_probs=75.9
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHhhcC---cCCcccHHHHHHHHHcc---cChhHHHHHHHHHHHhhcCCccccch
Q 044786 43 KPTLLFLNRLLLMHVSCGQLDTARQLFDEMP---LRDFNSWAVMIVGYVDV---ADYQECITLFAEMMKRKKGHMLLVFP 116 (340)
Q Consensus 43 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~~~~~~~~~~~ 116 (340)
+-|...|-.|-..|.+.|+++.|..-|.+.. .+|+..+..+..++..+ ....++.++|+++...+ +-+
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D------~~~ 226 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD------PAN 226 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC------Ccc
Confidence 5577888888888888888888888887765 34555555555554333 34567888888888875 566
Q ss_pred HHHHHHHHHHhhhccchhhHHHHHHHHHHcCCC
Q 044786 117 AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSS 149 (340)
Q Consensus 117 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 149 (340)
..+...+...+...|++.+|...|+.|.+....
T Consensus 227 iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 227 IRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 777778888888888898888888888888644
No 213
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.19 E-value=0.4 Score=40.72 Aligned_cols=161 Identities=7% Similarity=-0.041 Sum_probs=96.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHhhcCcC-Cc------ccHHHHHHHHHc---ccChhHHHHHHHHHHHhhcCCcccc
Q 044786 45 TLLFLNRLLLMHVSCGQLDTARQLFDEMPLR-DF------NSWAVMIVGYVD---VADYQECITLFAEMMKRKKGHMLLV 114 (340)
Q Consensus 45 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~------~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~~ 114 (340)
+..+...++-+|-...+++...++.+.+... +. .+--...-++.+ .|+.++|++++..+.... . .
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~--~---~ 214 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESD--E---N 214 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhcc--C---C
Confidence 3444446666688888888888888888743 11 111123334455 788888888888855442 1 5
Q ss_pred chHHHHHHHHHHhhh---------ccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHH----HHHHHH---HHc
Q 044786 115 FPAWIIVCVLKACVC---------TMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE----DADFVF---SQL 178 (340)
Q Consensus 115 ~~~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~a~~~~---~~~ 178 (340)
++..+|..+.+.|-. ...+++|...|.+.-+.. |+...--.+...+...|... +..++- ..+
T Consensus 215 ~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~l 292 (374)
T PF13281_consen 215 PDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSL 292 (374)
T ss_pred CChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 677777777766532 235788888888777664 33322222222222233211 222222 111
Q ss_pred c-c-------CChhhHHHHHHHHhccCchhHHHHHHHHHhhc
Q 044786 179 K-R-------HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRE 212 (340)
Q Consensus 179 ~-~-------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 212 (340)
. + .+--.+.+++.++.-.|+.++|....++|.+.
T Consensus 293 lg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 293 LGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 1 1 13344677888888899999999999999875
No 214
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.10 E-value=0.082 Score=42.33 Aligned_cols=90 Identities=13% Similarity=0.248 Sum_probs=55.1
Q ss_pred cCChhhHHHHHHHHhcc-----CchhHHHHHHHHHhhcccCCChhhHHHHHHhcccCCc---------------hhchHH
Q 044786 180 RHNTVVWTAKIVNNCRE-----GHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDD---------------DGNCGR 239 (340)
Q Consensus 180 ~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~---------------~~~~~~ 239 (340)
++|-.+|-..+..+... +.++=....++.|.+-|+.-|..+|+.||..+-+..- -.+.+.
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 44555555555555432 3445555556666666777777777777766543221 123466
Q ss_pred HHHHHHHHhCCCccHHHHHHHHHHHhccCC
Q 044786 240 QMHANIVKIGLESDEYVQCGLVDMYGKCRL 269 (340)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 269 (340)
.+++.|...|+.||..+-..|+.++.+.+-
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 777777777777777777777777766654
No 215
>PRK15331 chaperone protein SicA; Provisional
Probab=96.09 E-value=0.07 Score=39.24 Aligned_cols=85 Identities=11% Similarity=0.036 Sum_probs=42.1
Q ss_pred HcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcC
Q 044786 88 VDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167 (340)
Q Consensus 88 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 167 (340)
-..|++++|..+|.-+...+ ..+..-+..|..++-..+++++|...|......+. -|+..+--...+|...|+
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d------~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYD------FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhC------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCC
Confidence 34566666666666555543 23333344444444445556666655554444332 133333334455555555
Q ss_pred HHHHHHHHHHcc
Q 044786 168 LEDADFVFSQLK 179 (340)
Q Consensus 168 ~~~a~~~~~~~~ 179 (340)
.+.|...|....
T Consensus 121 ~~~A~~~f~~a~ 132 (165)
T PRK15331 121 AAKARQCFELVN 132 (165)
T ss_pred HHHHHHHHHHHH
Confidence 555555555443
No 216
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.02 E-value=0.32 Score=43.32 Aligned_cols=173 Identities=14% Similarity=0.079 Sum_probs=118.6
Q ss_pred hhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCc-CCcc---------cHHHHHHHHHc----ccC
Q 044786 27 AGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL-RDFN---------SWAVMIVGYVD----VAD 92 (340)
Q Consensus 27 ~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~~~---------~~~~li~~~~~----~g~ 92 (340)
.-..-+|.-+.+. +||. +..++...+-.|+-+.+++++..-.+ ++.. .|+..+..++. ..+
T Consensus 174 ~~G~G~f~L~lSl--LPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~ 248 (468)
T PF10300_consen 174 YFGFGLFNLVLSL--LPPK---VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVP 248 (468)
T ss_pred HHHHHHHHHHHHh--CCHH---HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCC
Confidence 3345677777776 5543 44677788888999999998887653 2322 36666655544 456
Q ss_pred hhHHHHHHHHHHHhhcCCccccchHHHHHHHH-HHhhhccchhhHHHHHHHHHHcC---CCCchhHHHHHHHHHHhhcCH
Q 044786 93 YQECITLFAEMMKRKKGHMLLVFPAWIIVCVL-KACVCTMNMELGKQVHGLLFKLG---SSRNISLTGSLINFYGKFRCL 168 (340)
Q Consensus 93 ~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~ 168 (340)
.+.|.++++.+.+. -|+...|...- +.+...|++++|.+.++...... .+.....+--+.-.+.-..+|
T Consensus 249 ~~~a~~lL~~~~~~-------yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w 321 (468)
T PF10300_consen 249 LEEAEELLEEMLKR-------YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDW 321 (468)
T ss_pred HHHHHHHHHHHHHh-------CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchH
Confidence 78899999999988 67777666554 56667899999999999765321 122334455566678889999
Q ss_pred HHHHHHHHHcccCCh---hhHHHHH-HHHhccCch-------hHHHHHHHHHhh
Q 044786 169 EDADFVFSQLKRHNT---VVWTAKI-VNNCREGHF-------HQVFNDFKEMGR 211 (340)
Q Consensus 169 ~~a~~~~~~~~~~~~---~~~~~li-~~~~~~~~~-------~~a~~~~~~m~~ 211 (340)
++|.+.|..+.+.+. ..|.-+. .++...|+. ++|.++|++...
T Consensus 322 ~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 322 EEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 999999999986532 2333322 233346777 888888888754
No 217
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.96 E-value=0.88 Score=38.76 Aligned_cols=160 Identities=11% Similarity=0.036 Sum_probs=88.8
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHcccC-------ChhhHHHHHHHHhc---cCchhHHHHHHHHHhhcccCCChhhHHHHH
Q 044786 156 GSLINFYGKFRCLEDADFVFSQLKRH-------NTVVWTAKIVNNCR---EGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225 (340)
Q Consensus 156 ~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll 225 (340)
-.++-+|....+++...++.+.+... ....--....++-+ .|+.++|++++..+....-.++..||..+-
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 34555688888888888888888754 11122233445556 788899999988866665667777887777
Q ss_pred Hhccc----C--CchhchHHHHHHHHHHhCCCccHHH---HHHHHHHHhccC-CHHHHHHHH---HHhh-cC------Cc
Q 044786 226 KACGG----V--DDDGNCGRQMHANIVKIGLESDEYV---QCGLVDMYGKCR-LLRDAERVF---ELIV-DK------KN 285 (340)
Q Consensus 226 ~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~~~~---~~~li~~~~~~~-~~~~A~~~~---~~~~-~~------~~ 285 (340)
..|-. . .+.+..-..+...-+...+.|+.+. +.+|+....... .-.+..++- ..+. .+ .+
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~d 304 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQD 304 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccccc
Confidence 66521 1 1111111112222222233343221 122332222211 112223332 1111 11 24
Q ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHHHHc
Q 044786 286 IASWNAMLVGYIRNGLYVEATKFLYLMKAS 315 (340)
Q Consensus 286 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 315 (340)
---+.+++.+..-.|++++|.+.+++|...
T Consensus 305 YWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 305 YWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 445567888999999999999999999866
No 218
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.92 E-value=0.45 Score=42.37 Aligned_cols=145 Identities=12% Similarity=-0.006 Sum_probs=103.3
Q ss_pred ccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccch----HHHHHHHHHHhhhc----cchhhHHHHHHHHHHcCCC
Q 044786 78 NSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP----AWIIVCVLKACVCT----MNMELGKQVHGLLFKLGSS 149 (340)
Q Consensus 78 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~----~~~~~~ll~~~~~~----~~~~~a~~~~~~~~~~~~~ 149 (340)
.....++....-.|+-+.+++.+.+..+.+ ++. .|- -..|+.++..++.. .+.+.+.++++.+.+.-
T Consensus 189 p~~~kll~~vGF~gdR~~GL~~L~~~~~~~-~i~--~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y-- 263 (468)
T PF10300_consen 189 PKVLKLLSFVGFSGDRELGLRLLWEASKSE-NIR--SPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY-- 263 (468)
T ss_pred HHHHHHHhhcCcCCcHHHHHHHHHHHhccC-Ccc--hHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC--
Confidence 456778888888899999999999877643 442 222 24777777666554 47899999999998874
Q ss_pred CchhHHHH-HHHHHHhhcCHHHHHHHHHHcccC-------ChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCChhhH
Q 044786 150 RNISLTGS-LINFYGKFRCLEDADFVFSQLKRH-------NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTF 221 (340)
Q Consensus 150 ~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~ 221 (340)
|+...|.. -.+.+...|++++|.+.|+..... ....+--+.-.+....+|++|.+.|.++.+.. ..+..+|
T Consensus 264 P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y 342 (468)
T PF10300_consen 264 PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFY 342 (468)
T ss_pred CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHH
Confidence 55555443 346677889999999999975532 33345556677888999999999999998853 3455555
Q ss_pred HHHHHhc
Q 044786 222 SSVLKAC 228 (340)
Q Consensus 222 ~~ll~~~ 228 (340)
.-+..+|
T Consensus 343 ~Y~~a~c 349 (468)
T PF10300_consen 343 AYLAAAC 349 (468)
T ss_pred HHHHHHH
Confidence 5444443
No 219
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.91 E-value=0.12 Score=41.82 Aligned_cols=76 Identities=14% Similarity=0.148 Sum_probs=66.4
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhhc-C-CcHHHHHHHHHHHHHcCchHHHHHHHHHHHH-----cCCccchhHHHHH
Q 044786 255 YVQCGLVDMYGKCRLLRDAERVFELIVD-K-KNIASWNAMLVGYIRNGLYVEATKFLYLMKA-----SGIQIQESLINDL 327 (340)
Q Consensus 255 ~~~~~li~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~~~~~t~~~l 327 (340)
.++..+++.+..+|+.+.+...++++.. . -+...|..++.+|.+.|+...|+..|+++.. .|+.|.+.+....
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 4567889999999999999999999986 2 4888999999999999999999999998765 5999999888777
Q ss_pred HHH
Q 044786 328 RIA 330 (340)
Q Consensus 328 l~a 330 (340)
..+
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 666
No 220
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.77 E-value=0.14 Score=44.10 Aligned_cols=65 Identities=9% Similarity=-0.104 Sum_probs=49.4
Q ss_pred CCCcchhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCH----HHHHHHHHHHHhcCChhHHHHHHhhcCc
Q 044786 7 PITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTL----LFLNRLLLMHVSCGQLDTARQLFDEMPL 74 (340)
Q Consensus 7 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~ 74 (340)
|.++..++.+-.+|.+.|++++|+..|+...+. .|+. .+|..+..+|...|++++|++.+++..+
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL---~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL---NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344567778888888888888888888887755 4553 3578888888888888888888877664
No 221
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.74 E-value=0.26 Score=39.60 Aligned_cols=115 Identities=9% Similarity=0.011 Sum_probs=75.0
Q ss_pred hHHHHHHHHHHhhh-----ccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHcccCChhhHHHHH
Q 044786 116 PAWIIVCVLKACVC-----TMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKI 190 (340)
Q Consensus 116 ~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li 190 (340)
|..+|-..+..+.. .+.++-....++.|.+.|+..|..+|+.|++.+-+-.-. .-|.+-
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfi----------------P~nvfQ 129 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFI----------------PQNVFQ 129 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccc----------------cHHHHH
Confidence 44444444444432 345666666778899999999999999999877553211 112222
Q ss_pred HHHhc-cCchhHHHHHHHHHhhcccCCChhhHHHHHHhcccCCchhchHHHHHHHHH
Q 044786 191 VNNCR-EGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIV 246 (340)
Q Consensus 191 ~~~~~-~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~ 246 (340)
..+.. -.+-+-+++++++|...|+.||..+-..++.++.+.+..-.-...+.-+|-
T Consensus 130 ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 130 KVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 22222 123345789999999999999999999999999888776433444444443
No 222
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.73 E-value=0.42 Score=42.05 Aligned_cols=161 Identities=12% Similarity=-0.011 Sum_probs=90.9
Q ss_pred HHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 044786 85 VGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164 (340)
Q Consensus 85 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 164 (340)
....-.++++++.++...-. -++ ..+..-.+.+++-+.+.|..+.|+++.. |+ ..-.+...+
T Consensus 269 k~av~~~d~~~v~~~i~~~~----ll~--~i~~~~~~~i~~fL~~~G~~e~AL~~~~---------D~---~~rFeLAl~ 330 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASN----LLP--NIPKDQGQSIARFLEKKGYPELALQFVT---------DP---DHRFELALQ 330 (443)
T ss_dssp HHHHHTT-HHH-----HHHH----TGG--G--HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHH
T ss_pred HHHHHcCChhhhhhhhhhhh----hcc--cCChhHHHHHHHHHHHCCCHHHHHhhcC---------Ch---HHHhHHHHh
Confidence 34455677777666654111 110 1224456777777778888888877643 22 123455667
Q ss_pred hcCHHHHHHHHHHcccCChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCChhhHHHHHHhcccCCchhchHHHHHHH
Q 044786 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHAN 244 (340)
Q Consensus 165 ~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~ 244 (340)
.|+++.|.++.++.. +...|..|.....+.|+++-|.+.|.+... |..++-.|...|+.+. ...+...
T Consensus 331 lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~-L~kl~~~ 398 (443)
T PF04053_consen 331 LGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREK-LSKLAKI 398 (443)
T ss_dssp CT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHH-HHHHHHH
T ss_pred cCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHH-HHHHHHH
Confidence 888888888766655 555788888888888888888888877653 3455555566666533 5555555
Q ss_pred HHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhh
Q 044786 245 IVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIV 281 (340)
Q Consensus 245 ~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 281 (340)
....| -+|.-..++.-.|++++..+++.+-.
T Consensus 399 a~~~~------~~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 399 AEERG------DINIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp HHHTT-------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred HHHcc------CHHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 44443 23445555556677777777766553
No 223
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.70 E-value=0.74 Score=35.86 Aligned_cols=178 Identities=13% Similarity=0.156 Sum_probs=85.3
Q ss_pred HHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 044786 84 IVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYG 163 (340)
Q Consensus 84 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 163 (340)
...+...|++.+|.+.|+.+.....+. +.-....-.+..++.+.|+++.|...++...+.-+.....-+...+.+.+
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s---~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~ 88 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNS---PYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLS 88 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTS---TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCC---hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHH
Confidence 344556777777777777777663221 23334555666777777777777777776665533322222222222221
Q ss_pred hhcCHHHHHHHHHHcccCChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCChhhHHHHHHhcccCCchhchHHHH--
Q 044786 164 KFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQM-- 241 (340)
Q Consensus 164 ~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~-- 241 (340)
......... ......+...+|...|+++.+. -|+. ....+ +...
T Consensus 89 ~~~~~~~~~------------------~~~~D~~~~~~A~~~~~~li~~--yP~S-------------~y~~~-A~~~l~ 134 (203)
T PF13525_consen 89 YYKQIPGIL------------------RSDRDQTSTRKAIEEFEELIKR--YPNS-------------EYAEE-AKKRLA 134 (203)
T ss_dssp HHHHHHHHH-------------------TT---HHHHHHHHHHHHHHHH---TTS-------------TTHHH-HHHHHH
T ss_pred HHHhCccch------------------hcccChHHHHHHHHHHHHHHHH--CcCc-------------hHHHH-HHHHHH
Confidence 111111000 0011123344555555555543 2332 11112 2111
Q ss_pred --HHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhcC-CcH----HHHHHHHHHHHHcCchHHHH
Q 044786 242 --HANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK-KNI----ASWNAMLVGYIRNGLYVEAT 306 (340)
Q Consensus 242 --~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-~~~----~~~~~li~~~~~~~~~~~a~ 306 (340)
.+.+.+.. -.+...|.+.|.+..|..-++.+... |+. ...-.++.+|.+.|..+.|.
T Consensus 135 ~l~~~la~~e--------~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 135 ELRNRLAEHE--------LYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHH--------HHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHH--------HHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 11111111 13566788888888888888877763 322 34567778888888777443
No 224
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.68 E-value=0.53 Score=34.07 Aligned_cols=126 Identities=11% Similarity=0.134 Sum_probs=66.2
Q ss_pred HHHHHHHHhccCchhHHHHHHHHHhhcccCCChhhHHHHHHhcccCCchhchHHHHHHHHHHhCCCccHHHHHHHHHHHh
Q 044786 186 WTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYG 265 (340)
Q Consensus 186 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 265 (340)
...+|..+...+.+.....+++.+...+ ..+....+.++..|++.... + . .+.+.. ..+......++..|.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~~-~-l---l~~l~~---~~~~yd~~~~~~~c~ 80 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDPQ-K-E---IERLDN---KSNHYDIEKVGKLCE 80 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCHH-H-H---HHHHHh---ccccCCHHHHHHHHH
Confidence 3445555655666666666666666654 24444556666666654332 1 1 122221 122333344666666
Q ss_pred ccCCHHHHHHHHHHhhcCCcHHHHHHHHHHHHHc-CchHHHHHHHHHHHHcCCccchhHHHHHHHHhh
Q 044786 266 KCRLLRDAERVFELIVDKKNIASWNAMLVGYIRN-GLYVEATKFLYLMKASGIQIQESLINDLRIACS 332 (340)
Q Consensus 266 ~~~~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~a~~ 332 (340)
+.+-++++.-++.++.. |...+..+... ++++.|.+.+.+- -++..|..++..|.
T Consensus 81 ~~~l~~~~~~l~~k~~~------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 81 KAKLYEEAVELYKKDGN------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred HcCcHHHHHHHHHhhcC------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 66666666666666631 22233333333 6677777666641 25556666666554
No 225
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.49 E-value=0.56 Score=33.10 Aligned_cols=117 Identities=10% Similarity=0.059 Sum_probs=51.9
Q ss_pred hhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCcC---------------------Cccc
Q 044786 21 TFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLR---------------------DFNS 79 (340)
Q Consensus 21 ~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---------------------~~~~ 79 (340)
.-.|..++..++....... . +..-+|.+|.-....-+-+-..+.++.+-+- +..-
T Consensus 13 ildG~V~qGveii~k~v~S-s---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~~se~ 88 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS-S---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRNKLSEY 88 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH-S----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT---HH
T ss_pred HHhchHHHHHHHHHHHcCc-C---CccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhcchHHH
Confidence 3457778888888777766 1 4445555554444444444445554444321 1122
Q ss_pred HHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcC
Q 044786 80 WAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLG 147 (340)
Q Consensus 80 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 147 (340)
.+..+.....+|+-+.-.+++..+.+.+ .++......+..+|.+.|+..++.+++.+.-+.|
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~------~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNE------EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH-----------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhcc------CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3334444444444444444444444322 3444444444445555555555544444444444
No 226
>PRK15331 chaperone protein SicA; Provisional
Probab=95.46 E-value=0.19 Score=37.07 Aligned_cols=89 Identities=7% Similarity=-0.107 Sum_probs=70.3
Q ss_pred HHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHc---ccCChhhHHHHHHHHhccCc
Q 044786 122 CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL---KRHNTVVWTAKIVNNCREGH 198 (340)
Q Consensus 122 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~li~~~~~~~~ 198 (340)
...--+...|++++|..+|+-+.-.++. +..-+..|..++-..+++++|...|... ...|..++-....+|...|+
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCC
Confidence 3444556789999999999988877654 5556677888888889999999988764 24466677777889999999
Q ss_pred hhHHHHHHHHHhh
Q 044786 199 FHQVFNDFKEMGR 211 (340)
Q Consensus 199 ~~~a~~~~~~m~~ 211 (340)
.+.|...|.....
T Consensus 121 ~~~A~~~f~~a~~ 133 (165)
T PRK15331 121 AAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999888876
No 227
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.42 E-value=0.67 Score=33.53 Aligned_cols=87 Identities=9% Similarity=0.027 Sum_probs=64.2
Q ss_pred hhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCcCCcccHHHHHHHHHccc
Q 044786 12 MYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVA 91 (340)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g 91 (340)
....++..+...+.......+++.+... + ..+...++.++..|++.+ ..+..+.++. ..+......+++.|.+.+
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~-~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKL-N-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHcc-C-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcC
Confidence 3457888888888899999999999887 6 367888999999998764 3444455552 234445566778888888
Q ss_pred ChhHHHHHHHHH
Q 044786 92 DYQECITLFAEM 103 (340)
Q Consensus 92 ~~~~a~~~~~~m 103 (340)
.++++.-++.++
T Consensus 84 l~~~~~~l~~k~ 95 (140)
T smart00299 84 LYEEAVELYKKD 95 (140)
T ss_pred cHHHHHHHHHhh
Confidence 888888887776
No 228
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.40 E-value=0.19 Score=43.38 Aligned_cols=62 Identities=2% Similarity=-0.116 Sum_probs=45.9
Q ss_pred ccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchH----HHHHHHHHHhhhccchhhHHHHHHHHHHc
Q 044786 78 NSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPA----WIIVCVLKACVCTMNMELGKQVHGLLFKL 146 (340)
Q Consensus 78 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 146 (340)
..|+.+..+|...|++++|+..|++.++. .|+. .+|..+..+|...|+.++|.+.++...+.
T Consensus 76 ~a~~NLG~AL~~lGryeEAIa~f~rALeL-------~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 76 EDAVNLGLSLFSKGRVKDALAQFETALEL-------NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35777777888888888888888887776 3442 35777888888888888888887777664
No 229
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.29 E-value=0.26 Score=39.38 Aligned_cols=97 Identities=12% Similarity=0.091 Sum_probs=62.4
Q ss_pred HHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCC-C-chhHHHH
Q 044786 80 WAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSS-R-NISLTGS 157 (340)
Q Consensus 80 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~ 157 (340)
|+.-+..+ +.|++..|...|....+...+- ......+..|..++...|++++|..+|..+.+.-.+ | -+..+-.
T Consensus 145 Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s---~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 145 YNAALDLY-KSGDYAEAEQAFQAFIKKYPNS---TYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHcCCCC---cccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 66666544 5667888888888888773211 334446677778888888888888777776654322 2 2245555
Q ss_pred HHHHHHhhcCHHHHHHHHHHccc
Q 044786 158 LINFYGKFRCLEDADFVFSQLKR 180 (340)
Q Consensus 158 l~~~~~~~~~~~~a~~~~~~~~~ 180 (340)
|..+..+.|+.++|...|+++.+
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHH
Confidence 66666666777777766666654
No 230
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.23 E-value=0.65 Score=38.41 Aligned_cols=148 Identities=10% Similarity=-0.019 Sum_probs=98.8
Q ss_pred hccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCc---CCcccHHHHH----HHHHcccChh
Q 044786 22 FQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL---RDFNSWAVMI----VGYVDVADYQ 94 (340)
Q Consensus 22 ~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li----~~~~~~g~~~ 94 (340)
..|.+.+|-..++++.+. ++.|...++.-=.+|.-.|+.+.-...++++.. +|...|..+- -++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d--~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD--YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh--CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 346677777778888775 677777777777888888888888888888773 3554443322 2345678888
Q ss_pred HHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCc---hhHHHHHHHHHHhhcCHHHH
Q 044786 95 ECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRN---ISLTGSLINFYGKFRCLEDA 171 (340)
Q Consensus 95 ~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a 171 (340)
+|++.-++..+.+ +.|...-.+....+-..|++.++.++..+-...=-+.. ..-|=-..-.+...+.++.|
T Consensus 193 dAEk~A~ralqiN------~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~a 266 (491)
T KOG2610|consen 193 DAEKQADRALQIN------RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKA 266 (491)
T ss_pred hHHHHHHhhccCC------CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHH
Confidence 8888888887775 67888888888888888888888877654322100000 00111122345566888888
Q ss_pred HHHHHH
Q 044786 172 DFVFSQ 177 (340)
Q Consensus 172 ~~~~~~ 177 (340)
+++|+.
T Consensus 267 leIyD~ 272 (491)
T KOG2610|consen 267 LEIYDR 272 (491)
T ss_pred HHHHHH
Confidence 888875
No 231
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.20 E-value=0.47 Score=37.99 Aligned_cols=64 Identities=11% Similarity=-0.001 Sum_probs=30.0
Q ss_pred HHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHc
Q 044786 80 WAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKL 146 (340)
Q Consensus 80 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 146 (340)
+-.|..++...|++++|...|..+.+..... +--...+--|..+..+.|+.++|..+|+++.+.
T Consensus 181 ~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s---~KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 181 YYWLGESLYAQGDYEDAAYIFARVVKDYPKS---PKAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHhCCCC---CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4444555555555555555555554442111 112234444555555555555555555555444
No 232
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.17 E-value=1.5 Score=36.11 Aligned_cols=100 Identities=11% Similarity=-0.062 Sum_probs=53.4
Q ss_pred HHHHHHHHHhhhccchh---hHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHcccC---ChhhHHHHHH
Q 044786 118 WIIVCVLKACVCTMNME---LGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH---NTVVWTAKIV 191 (340)
Q Consensus 118 ~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~ 191 (340)
.++..++.++...+..+ +|..+++.+.+.... .+.++-.-++.+.+.++.+.+.+++.+|... ....+...+.
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~ 163 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHH
Confidence 36666777777766544 444455555443322 2444545566666677888888888777643 2233444444
Q ss_pred HHhc--cCchhHHHHHHHHHhhcccCCCh
Q 044786 192 NNCR--EGHFHQVFNDFKEMGRERIKKNS 218 (340)
Q Consensus 192 ~~~~--~~~~~~a~~~~~~m~~~~~~p~~ 218 (340)
.+.. ......|...+..+....+.|..
T Consensus 164 ~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 164 HIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 3321 22234555555555544444443
No 233
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.10 E-value=2 Score=37.19 Aligned_cols=142 Identities=11% Similarity=0.106 Sum_probs=100.1
Q ss_pred cHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHH-HH
Q 044786 79 SWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLT-GS 157 (340)
Q Consensus 79 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~ 157 (340)
+|...+....+..-.+.|..+|-+..+. |+ +.++..++++++..++. |+...|..+|+.-...- ||...| +.
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~--~~--~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~f--~d~~~y~~k 471 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKE--GI--VGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLKF--PDSTLYKEK 471 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhcc--CC--CCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHhC--CCchHHHHH
Confidence 5777788888888888888899888887 43 36778888888877654 67778888887544432 233333 45
Q ss_pred HHHHHHhhcCHHHHHHHHHHcccC---C--hhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCChhhHHHHHHhcc
Q 044786 158 LINFYGKFRCLEDADFVFSQLKRH---N--TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229 (340)
Q Consensus 158 l~~~~~~~~~~~~a~~~~~~~~~~---~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~ 229 (340)
.+..+...++-+.|..+|+...++ + ...|..+|.--..-|+...+..+=++|.. +.|...+......-|.
T Consensus 472 yl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~ 546 (660)
T COG5107 472 YLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHh
Confidence 667777888888888888865543 2 45688888887888888888888777766 3565555555555554
No 234
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.95 E-value=0.39 Score=40.65 Aligned_cols=105 Identities=15% Similarity=0.174 Sum_probs=65.3
Q ss_pred HHHHHhcCChhHHHHHHhhcCc----C--------------CcccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCcccc
Q 044786 53 LLMHVSCGQLDTARQLFDEMPL----R--------------DFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLV 114 (340)
Q Consensus 53 i~~~~~~~~~~~a~~~~~~~~~----~--------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 114 (340)
-+.|.+.|++..|...|++... . -..++..+.-++.+.+++..|++.-++.++.+ +
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~------~ 288 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD------P 288 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC------C
Confidence 3456777888888777766431 0 11245666667777777777777777777774 5
Q ss_pred chHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 044786 115 FPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164 (340)
Q Consensus 115 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 164 (340)
++.....-=..++...|+++.|...|+.+++..+. |-..-+.++..--+
T Consensus 289 ~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 289 NNVKALYRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLKQK 337 (397)
T ss_pred CchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHH
Confidence 66666666667777777777777777777666433 33333334433333
No 235
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=94.84 E-value=2.2 Score=36.29 Aligned_cols=239 Identities=8% Similarity=-0.022 Sum_probs=120.6
Q ss_pred CChhHHHHHHhhcC---cCCcccHHHHHHHH--HcccChhHHHHHHHHHHHhhcCCccccchHH--HHHHHHHHhhhccc
Q 044786 60 GQLDTARQLFDEMP---LRDFNSWAVMIVGY--VDVADYQECITLFAEMMKRKKGHMLLVFPAW--IIVCVLKACVCTMN 132 (340)
Q Consensus 60 ~~~~~a~~~~~~~~---~~~~~~~~~li~~~--~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~ 132 (340)
|+-..|.++-.+-. ..|....-.++.+- .-.|+++.|.+-|+.|... |... -+..|.-..-+.|+
T Consensus 98 Gda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d--------PEtRllGLRgLyleAqr~Ga 169 (531)
T COG3898 98 GDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD--------PETRLLGLRGLYLEAQRLGA 169 (531)
T ss_pred CchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC--------hHHHHHhHHHHHHHHHhccc
Confidence 55555555544332 33444444444332 3347777777777777643 2222 23334444445666
Q ss_pred hhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHccc-----C--------------------------
Q 044786 133 MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR-----H-------------------------- 181 (340)
Q Consensus 133 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~-------------------------- 181 (340)
.+.|.++-+..-..-.+ -.......++..|..|+|+.|+++++.-.. +
T Consensus 170 reaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~A 248 (531)
T COG3898 170 REAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASA 248 (531)
T ss_pred HHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHH
Confidence 66666665555443322 234555666677777777777776654321 1
Q ss_pred ------------Chhh-HHHHHHHHhccCchhHHHHHHHHHhhcccCCChhhHHHHHHhcccCCchhchHHHHHHHHHHh
Q 044786 182 ------------NTVV-WTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKI 248 (340)
Q Consensus 182 ------------~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~ 248 (340)
|.+. --.--.++.+.|+..++-.+++.+.+....|+.. .+-.+.+.|+.. ...+.+.-.-.
T Consensus 249 r~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gdta--~dRlkRa~~L~ 322 (531)
T COG3898 249 RDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSGDTA--LDRLKRAKKLE 322 (531)
T ss_pred HHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCCCcH--HHHHHHHHHHH
Confidence 1111 1112356666777777777777776654444431 222334444431 22222222222
Q ss_pred CCCc-cHHHHHHHHHHHhccCCHHHHHHHHHHhhc-CCcHHHHHHHHHHH-HHcCchHHHHHHHHHHH
Q 044786 249 GLES-DEYVQCGLVDMYGKCRLLRDAERVFELIVD-KKNIASWNAMLVGY-IRNGLYVEATKFLYLMK 313 (340)
Q Consensus 249 ~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~li~~~-~~~~~~~~a~~~~~~m~ 313 (340)
.++| +..+-..+.++-...|++..|..--+.... .|....|..|...- ...|+-.++..++-+-.
T Consensus 323 slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav 390 (531)
T COG3898 323 SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAV 390 (531)
T ss_pred hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHh
Confidence 3444 344455556666666666665554444332 35555555555433 23466666666655543
No 236
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.83 E-value=3.3 Score=38.28 Aligned_cols=119 Identities=11% Similarity=0.052 Sum_probs=90.1
Q ss_pred CCCCchhHHHHHHHHHHhhcCHHHHHHHHHHcccCChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCChhhHHHHHH
Q 044786 147 GSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLK 226 (340)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~ 226 (340)
|..-...+.+--+.-+..-|+..+|.++-.+..-||-..|-.-+.+++..++|++-+++-+.+.. +.-|.-+..
T Consensus 679 ~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe 752 (829)
T KOG2280|consen 679 GGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVE 752 (829)
T ss_pred ccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHH
Confidence 33334445556667778889999999999999999999999999999999999988777655542 467788899
Q ss_pred hcccCCchhchHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhh
Q 044786 227 ACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIV 281 (340)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 281 (340)
+|.+.|+.++ |..+..... +.. -.+.+|.+.|++.+|.++--+-+
T Consensus 753 ~c~~~~n~~E-A~KYiprv~-----~l~----ekv~ay~~~~~~~eAad~A~~~r 797 (829)
T KOG2280|consen 753 ACLKQGNKDE-AKKYIPRVG-----GLQ----EKVKAYLRVGDVKEAADLAAEHR 797 (829)
T ss_pred HHHhcccHHH-HhhhhhccC-----ChH----HHHHHHHHhccHHHHHHHHHHhc
Confidence 9999999988 555544322 111 57788999999999887755443
No 237
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.82 E-value=1.9 Score=36.89 Aligned_cols=153 Identities=7% Similarity=-0.088 Sum_probs=86.6
Q ss_pred HHHHhhcCHHHHHHHHHHcccCChh-hHHHHHHHH--hccCchhHHHHHHHHHhhcccCCChhhHHHHHHh---------
Q 044786 160 NFYGKFRCLEDADFVFSQLKRHNTV-VWTAKIVNN--CREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA--------- 227 (340)
Q Consensus 160 ~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~li~~~--~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~--------- 227 (340)
.++.-.|++++|.++--.+.+-|.. .+...+++. -..++.+.|...|.+-... .|+...-..+-..
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~ 254 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKE 254 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHh
Confidence 3455567777777766555544332 233334333 3466777777777776653 3554433222211
Q ss_pred ----cccCCchhchHHHHHHHHHH---hCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhcCCcHHHHHHHHH--HHHH
Q 044786 228 ----CGGVDDDGNCGRQMHANIVK---IGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLV--GYIR 298 (340)
Q Consensus 228 ----~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~li~--~~~~ 298 (340)
..+.|.+.. +...+...+. .+..|+...|.....+..+.|+.++|..-.++...-.+..++..+.+ ++..
T Consensus 255 ~gN~~fk~G~y~~-A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~ 333 (486)
T KOG0550|consen 255 RGNDAFKNGNYRK-AYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLA 333 (486)
T ss_pred hhhhHhhccchhH-HHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHH
Confidence 245566644 4444444332 23455666777777777788888888887777764333444444433 3445
Q ss_pred cCchHHHHHHHHHHHHc
Q 044786 299 NGLYVEATKFLYLMKAS 315 (340)
Q Consensus 299 ~~~~~~a~~~~~~m~~~ 315 (340)
.++|++|.+-|+.....
T Consensus 334 le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 334 LEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 67777777777765433
No 238
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.68 E-value=1.1 Score=32.29 Aligned_cols=79 Identities=14% Similarity=0.080 Sum_probs=54.6
Q ss_pred hhHHHHHHhhhccchhhHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhcCChhHHHHHHhhcCcCC----cccHHHHHHH
Q 044786 12 MYTCLIKECTFQKDSAGAFELLNHIRKRVNIKP-TLLFLNRLLLMHVSCGQLDTARQLFDEMPLRD----FNSWAVMIVG 86 (340)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~li~~ 86 (340)
.|..-. ...+.|+++.|.+.|+.+..++-..| .....-.|+.+|.+.+++++|...++++.+-+ -..|...+.+
T Consensus 13 ly~~a~-~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~g 91 (142)
T PF13512_consen 13 LYQEAQ-EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRG 91 (142)
T ss_pred HHHHHH-HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHH
Confidence 344433 34578999999999999998743322 34556678889999999999999999887321 2346666666
Q ss_pred HHccc
Q 044786 87 YVDVA 91 (340)
Q Consensus 87 ~~~~g 91 (340)
++...
T Consensus 92 L~~~~ 96 (142)
T PF13512_consen 92 LSYYE 96 (142)
T ss_pred HHHHH
Confidence 55443
No 239
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.61 E-value=1.9 Score=34.62 Aligned_cols=127 Identities=13% Similarity=0.131 Sum_probs=56.4
Q ss_pred HHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcC-CCCchh----HHHH
Q 044786 83 MIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLG-SSRNIS----LTGS 157 (340)
Q Consensus 83 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~----~~~~ 157 (340)
+|..+.+.+++++....|.+++.--...-.-..+..+.+.++..-..+.+.+....+|+.-.+.- -..+.. |-+.
T Consensus 71 miKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtK 150 (440)
T KOG1464|consen 71 MIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTK 150 (440)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccch
Confidence 44555555555555555555543200000002233344555555444555544444443322110 000111 2234
Q ss_pred HHHHHHhhcCHHHHHHHHHHcccC---------------ChhhHHHHHHHHhccCchhHHHHHHHHH
Q 044786 158 LINFYGKFRCLEDADFVFSQLKRH---------------NTVVWTAKIVNNCREGHFHQVFNDFKEM 209 (340)
Q Consensus 158 l~~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~li~~~~~~~~~~~a~~~~~~m 209 (340)
|...|...+++.+..++++++.+. -...|..=|..|....+-.+...++++.
T Consensus 151 Lgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqa 217 (440)
T KOG1464|consen 151 LGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQA 217 (440)
T ss_pred HhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHH
Confidence 555566666666666666655421 1234555555666555555555555544
No 240
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=94.59 E-value=3.1 Score=37.86 Aligned_cols=188 Identities=10% Similarity=0.027 Sum_probs=110.8
Q ss_pred CCCCCCCCcchhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcC--------
Q 044786 2 DNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMP-------- 73 (340)
Q Consensus 2 ~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~-------- 73 (340)
+++|-.|+... +...|+-.|.+.+|-++|.+- |.. |..+.+|...+.+|.|.+++..-.
T Consensus 627 k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~----G~e------nRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~ 693 (1081)
T KOG1538|consen 627 KKRGETPNDLL---LADVFAYQGKFHEAAKLFKRS----GHE------NRALEMYTDLRMFDYAQEFLGSGDPKEKKMLI 693 (1081)
T ss_pred HhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHc----Cch------hhHHHHHHHHHHHHHHHHHhhcCChHHHHHHH
Confidence 45566666543 445567778888888887543 332 233455555555555555544322
Q ss_pred -c-----CCcccHHHHHHHHHcccChhHHHHHHH------HHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHH
Q 044786 74 -L-----RDFNSWAVMIVGYVDVADYQECITLFA------EMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHG 141 (340)
Q Consensus 74 -~-----~~~~~~~~li~~~~~~g~~~~a~~~~~------~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 141 (340)
+ +|+.-=.+....+..+|+.++|..+.- .+.+.+-.+ -..+..+...+..-+-+...+..|-++|.
T Consensus 694 RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkl--d~~ere~l~~~a~ylk~l~~~gLAaeIF~ 771 (1081)
T KOG1538|consen 694 RKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKL--DKAEREPLLLCATYLKKLDSPGLAAEIFL 771 (1081)
T ss_pred HHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhc--chhhhhHHHHHHHHHhhccccchHHHHHH
Confidence 1 122222234455666777777766532 122221111 13344455555555555666777777777
Q ss_pred HHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHcccC--Chh-----------hHHHHHHHHhccCchhHHHHHHHH
Q 044786 142 LLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH--NTV-----------VWTAKIVNNCREGHFHQVFNDFKE 208 (340)
Q Consensus 142 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~-----------~~~~li~~~~~~~~~~~a~~~~~~ 208 (340)
.|-+. .++++.....++|++|..+-+..++- ++. -|..--++|.+.|+..+|..++++
T Consensus 772 k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQ 842 (1081)
T KOG1538|consen 772 KMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQ 842 (1081)
T ss_pred HhccH---------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHH
Confidence 66433 35677888889999999998887642 221 234445788889999999999998
Q ss_pred Hhhcc
Q 044786 209 MGRER 213 (340)
Q Consensus 209 m~~~~ 213 (340)
+....
T Consensus 843 Ltnna 847 (1081)
T KOG1538|consen 843 LTNNA 847 (1081)
T ss_pred hhhhh
Confidence 86543
No 241
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.58 E-value=4.2 Score=39.72 Aligned_cols=30 Identities=23% Similarity=0.273 Sum_probs=19.6
Q ss_pred CCCHHHHHHHHHHHHhcC--ChhHHHHHHhhcC
Q 044786 43 KPTLLFLNRLLLMHVSCG--QLDTARQLFDEMP 73 (340)
Q Consensus 43 ~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~ 73 (340)
.|+ .-.-.+|..|.+.+ .++.|+....+..
T Consensus 788 ~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~ 819 (1265)
T KOG1920|consen 788 APD-KFNLFILTSYVKSNPPEIEEALQKIKELQ 819 (1265)
T ss_pred Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 445 44456777888776 6677776666555
No 242
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.53 E-value=1.1 Score=31.64 Aligned_cols=63 Identities=14% Similarity=0.096 Sum_probs=48.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhc--CCcHHHHHHHHHHHHHcCchHHHHHHHHHHHHcCCc
Q 044786 256 VQCGLVDMYGKCRLLRDAERVFELIVD--KKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318 (340)
Q Consensus 256 ~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 318 (340)
.+..-++.+.+.|+-+.-.++..++.. ++++...-.+..+|.+.|+..++-+++++..++|++
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 345566677788899999999998863 577888888999999999999999999999999975
No 243
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.43 E-value=0.53 Score=37.08 Aligned_cols=165 Identities=10% Similarity=0.016 Sum_probs=88.1
Q ss_pred hhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCcCCcccHHHHHHHHHcccChhHHHHHHHHHHH
Q 044786 26 SAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105 (340)
Q Consensus 26 ~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 105 (340)
++.|.-+...+... .--...|+.-..+|..+|..+.|-..+++.-+ ....-++++|+++|.+...
T Consensus 74 yEqaamLake~~kl---sEvvdl~eKAs~lY~E~GspdtAAmaleKAak------------~lenv~Pd~AlqlYqrala 138 (308)
T KOG1585|consen 74 YEQAAMLAKELSKL---SEVVDLYEKASELYVECGSPDTAAMALEKAAK------------ALENVKPDDALQLYQRALA 138 (308)
T ss_pred HHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHhCCcchHHHHHHHHHH------------HhhcCCHHHHHHHHHHHHH
Confidence 34444444555433 22345677777888888888877776665431 1123344455555544332
Q ss_pred hhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHc----CCCCch-hHHHHHHHHHHhhcCHHHHHHHHHHcc-
Q 044786 106 RKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKL----GSSRNI-SLTGSLINFYGKFRCLEDADFVFSQLK- 179 (340)
Q Consensus 106 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~- 179 (340)
.-..-+...--...+..+-+.+.+...+++|-..+..-... .-.++. ..|...|-.|....++..|+..++.-.
T Consensus 139 vve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~q 218 (308)
T KOG1585|consen 139 VVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQ 218 (308)
T ss_pred HHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhc
Confidence 10000001344444555555666666666555444332211 111222 235566666777788888888888732
Q ss_pred ------cCChhhHHHHHHHHhccCchhHHHHHH
Q 044786 180 ------RHNTVVWTAKIVNNCREGHFHQVFNDF 206 (340)
Q Consensus 180 ------~~~~~~~~~li~~~~~~~~~~~a~~~~ 206 (340)
..+..+...|+.+|- .|+.+++.++.
T Consensus 219 ip~f~~sed~r~lenLL~ayd-~gD~E~~~kvl 250 (308)
T KOG1585|consen 219 IPAFLKSEDSRSLENLLTAYD-EGDIEEIKKVL 250 (308)
T ss_pred CccccChHHHHHHHHHHHHhc-cCCHHHHHHHH
Confidence 125667778887774 56666655443
No 244
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.42 E-value=0.13 Score=27.14 Aligned_cols=26 Identities=19% Similarity=0.183 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHcCchHHHHHHHHHHH
Q 044786 288 SWNAMLVGYIRNGLYVEATKFLYLMK 313 (340)
Q Consensus 288 ~~~~li~~~~~~~~~~~a~~~~~~m~ 313 (340)
+|+.|...|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778888888888888888888854
No 245
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.40 E-value=1 Score=33.11 Aligned_cols=49 Identities=20% Similarity=0.278 Sum_probs=22.6
Q ss_pred hcCChhHHHHHHhhcC--cCCcccH-HHHHHHHHcccChhHHHHHHHHHHHh
Q 044786 58 SCGQLDTARQLFDEMP--LRDFNSW-AVMIVGYVDVADYQECITLFAEMMKR 106 (340)
Q Consensus 58 ~~~~~~~a~~~~~~~~--~~~~~~~-~~li~~~~~~g~~~~a~~~~~~m~~~ 106 (340)
+.++.+++..+++.+. .|..... ..-...+...|+|.+|+++|+++.+.
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 3455555555555444 2322211 11222344555666666666665443
No 246
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.37 E-value=2.9 Score=35.65 Aligned_cols=63 Identities=10% Similarity=-0.103 Sum_probs=47.5
Q ss_pred ccHHHHHHHHHHHhccCCHHHHHHHHHHhhcCC------cHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Q 044786 252 SDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK------NIASWNAMLVGYIRNGLYVEATKFLYLMKA 314 (340)
Q Consensus 252 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 314 (340)
....+|..+.+.+-+.|+++.|...+..+.... .+...-.-...+-..|+..+|+..+++...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455677888888889999999999888887522 344444556667788888999998888776
No 247
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.36 E-value=0.17 Score=28.10 Aligned_cols=28 Identities=14% Similarity=0.331 Sum_probs=20.5
Q ss_pred cHHHHHHHHHcccChhHHHHHHHHHHHh
Q 044786 79 SWAVMIVGYVDVADYQECITLFAEMMKR 106 (340)
Q Consensus 79 ~~~~li~~~~~~g~~~~a~~~~~~m~~~ 106 (340)
+|..+...|...|++++|+++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4556677777777777777777777776
No 248
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.23 E-value=2.5 Score=34.45 Aligned_cols=19 Identities=16% Similarity=0.499 Sum_probs=8.9
Q ss_pred HcccChhHHHHHHHHHHHh
Q 044786 88 VDVADYQECITLFAEMMKR 106 (340)
Q Consensus 88 ~~~g~~~~a~~~~~~m~~~ 106 (340)
...|++.+|..+|+.....
T Consensus 145 ~~~e~~~~a~~~~~~al~~ 163 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQA 163 (304)
T ss_pred hhccchhhHHHHHHHHHHh
Confidence 3444444444444444444
No 249
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.22 E-value=2.8 Score=34.84 Aligned_cols=127 Identities=13% Similarity=0.119 Sum_probs=81.1
Q ss_pred chhhHHHHHHHHHHcCCCCchhHHHHHHHHHHh--hc----CHHHHHHHHHHcccC-------ChhhHHHHHHHHhccCc
Q 044786 132 NMELGKQVHGLLFKLGSSRNISLTGSLINFYGK--FR----CLEDADFVFSQLKRH-------NTVVWTAKIVNNCREGH 198 (340)
Q Consensus 132 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~-------~~~~~~~li~~~~~~~~ 198 (340)
.+++...+++.+.+.|+..+..+|-+....... .. ....|.++|+.|++. +-.++..++.. ..++
T Consensus 77 ~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~ 154 (297)
T PF13170_consen 77 AFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSED 154 (297)
T ss_pred HHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--cccc
Confidence 366777888999999998888777653333333 22 356788999999854 34455555543 2333
Q ss_pred ----hhHHHHHHHHHhhcccCCCh--hhHHHHHHhcccCCchh-chHHHHHHHHHHhCCCccHHHHHHH
Q 044786 199 ----FHQVFNDFKEMGRERIKKNS--YTFSSVLKACGGVDDDG-NCGRQMHANIVKIGLESDEYVQCGL 260 (340)
Q Consensus 199 ----~~~a~~~~~~m~~~~~~p~~--~t~~~ll~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l 260 (340)
.+.+..+|+.+.+.|+..+- ...+.++..+....... .-+..+++.+.+.|+++....|..+
T Consensus 155 ~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 155 VEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 45677888888888877643 33444444333222221 1266778889999999888877544
No 250
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.21 E-value=0.56 Score=38.12 Aligned_cols=75 Identities=9% Similarity=0.071 Sum_probs=51.8
Q ss_pred HHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHH-----cCCCCchhH
Q 044786 80 WAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFK-----LGSSRNISL 154 (340)
Q Consensus 80 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~ 154 (340)
+..++..+...|+++.+...++++.... +.+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~d------p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~ 229 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELD------PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPEL 229 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcC------ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHH
Confidence 4556666777777777777777777774 56777777778888877777777777776654 466666655
Q ss_pred HHHHHH
Q 044786 155 TGSLIN 160 (340)
Q Consensus 155 ~~~l~~ 160 (340)
......
T Consensus 230 ~~~y~~ 235 (280)
T COG3629 230 RALYEE 235 (280)
T ss_pred HHHHHH
Confidence 544333
No 251
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.09 E-value=0.24 Score=27.48 Aligned_cols=39 Identities=10% Similarity=-0.078 Sum_probs=25.7
Q ss_pred chhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHH
Q 044786 11 DMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNR 51 (340)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ 51 (340)
.++..+...+.+.|++++|.++|+...+. .+-|...+..
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--~P~~~~a~~~ 40 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL--DPDDPEAWRA 40 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCCHHHHHH
Confidence 45666777777778888888888877766 3334444443
No 252
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.05 E-value=1.6 Score=37.16 Aligned_cols=22 Identities=0% Similarity=-0.034 Sum_probs=17.5
Q ss_pred HHHHcccChhHHHHHHHHHHHh
Q 044786 85 VGYVDVADYQECITLFAEMMKR 106 (340)
Q Consensus 85 ~~~~~~g~~~~a~~~~~~m~~~ 106 (340)
..|.+.|++..|...|++....
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~ 237 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSF 237 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHH
Confidence 4678899999999998886544
No 253
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.93 E-value=2.1 Score=35.54 Aligned_cols=127 Identities=9% Similarity=0.091 Sum_probs=76.6
Q ss_pred chhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh--c----CChhHHHHHHhhcCcC-------CcccHHHHHHHHHccc
Q 044786 25 DSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVS--C----GQLDTARQLFDEMPLR-------DFNSWAVMIVGYVDVA 91 (340)
Q Consensus 25 ~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~--~----~~~~~a~~~~~~~~~~-------~~~~~~~li~~~~~~g 91 (340)
.+++.+++++.|.+. |++-+..+|-+....... . .....|.++|+.|++. +-.++..++.. ...
T Consensus 77 ~~~~~~~~y~~L~~~-gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~ 153 (297)
T PF13170_consen 77 AFKEVLDIYEKLKEA-GFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSE 153 (297)
T ss_pred HHHHHHHHHHHHHHh-ccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccc
Confidence 466678899999999 998888777664443333 2 2356788888888842 33455555544 222
Q ss_pred C----hhHHHHHHHHHHHhhcCCccccchH-HHHHHHHHHhhhccc--hhhHHHHHHHHHHcCCCCchhHHHHH
Q 044786 92 D----YQECITLFAEMMKRKKGHMLLVFPA-WIIVCVLKACVCTMN--MELGKQVHGLLFKLGSSRNISLTGSL 158 (340)
Q Consensus 92 ~----~~~a~~~~~~m~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l 158 (340)
+ .+.++.+|+.+.+.| . .+-+. .....++..+..... ...+.++++.+.+.|+++....|..+
T Consensus 154 ~~e~l~~~~E~~Y~~L~~~~--f--~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 154 DVEELAERMEQCYQKLADAG--F--KKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred cHHHHHHHHHHHHHHHHHhC--C--CCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 2 345677777777753 3 12233 233333333332222 45777888888888887776665443
No 254
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.89 E-value=0.85 Score=34.58 Aligned_cols=63 Identities=6% Similarity=0.023 Sum_probs=32.8
Q ss_pred cHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHH
Q 044786 79 SWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLF 144 (340)
Q Consensus 79 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 144 (340)
.+..+..-|.+.|+.+.|.+.|.++.+.-.++ ..-...+-.+++.+...+++..+........
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~---~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSP---GHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCH---HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34555556666666666666666655542111 2223344555555555555555555554443
No 255
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.52 E-value=1.7 Score=30.76 Aligned_cols=91 Identities=14% Similarity=0.053 Sum_probs=58.7
Q ss_pred HHHhcCChhHHHHHHhhcC---cCCcccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhcc
Q 044786 55 MHVSCGQLDTARQLFDEMP---LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTM 131 (340)
Q Consensus 55 ~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 131 (340)
+.+..|+++.|++.|.+.. ......||.-..++--.|+.++|++-+++..+.. |.. -+.--..|..-...|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa-g~~-trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELA-GDQ-TRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc-Ccc-chHHHHHHHHHHHHHHHhC
Confidence 4567788888888887755 3466678888888888888888888888887764 220 0111123333334455566
Q ss_pred chhhHHHHHHHHHHcC
Q 044786 132 NMELGKQVHGLLFKLG 147 (340)
Q Consensus 132 ~~~~a~~~~~~~~~~~ 147 (340)
+-+.|..=|+..-+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 6777777676666665
No 256
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.51 E-value=2.4 Score=31.66 Aligned_cols=54 Identities=19% Similarity=0.269 Sum_probs=38.3
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCcCCcccHHHHH
Q 044786 30 FELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMI 84 (340)
Q Consensus 30 ~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li 84 (340)
.+.++.+.+. +++|+...+..+++.+.+.|++....++++.=.-+|.......+
T Consensus 14 lEYirSl~~~-~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~L 67 (167)
T PF07035_consen 14 LEYIRSLNQH-NIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQL 67 (167)
T ss_pred HHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHH
Confidence 4555556666 88888889999999999998888888777665545544443333
No 257
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.42 E-value=5.2 Score=35.31 Aligned_cols=55 Identities=16% Similarity=0.075 Sum_probs=34.4
Q ss_pred HHHHHHHhhcCHHHHHHHHHHcccC-----ChhhHHHHHHHHhccCchhHHHHHHHHHhh
Q 044786 157 SLINFYGKFRCLEDADFVFSQLKRH-----NTVVWTAKIVNNCREGHFHQVFNDFKEMGR 211 (340)
Q Consensus 157 ~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 211 (340)
.+..+..+.|+.++|.+.+++|.+. +......|+.++...+.+.++..++.+-.+
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 3455555667777777777776532 223455667777777777777777766543
No 258
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.36 E-value=1 Score=34.20 Aligned_cols=58 Identities=17% Similarity=0.092 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHcccCC------hhhHHHHHHHHhccCchhHHHHHHHHHhh
Q 044786 154 LTGSLINFYGKFRCLEDADFVFSQLKRHN------TVVWTAKIVNNCREGHFHQVFNDFKEMGR 211 (340)
Q Consensus 154 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 211 (340)
.+..+.+.|++.|+.++|.+.|.++.+.. ...+-.+|+.....+++..+...+.+...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45566677777777777777777765442 22355566666667777777666666543
No 259
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=93.29 E-value=0.037 Score=40.33 Aligned_cols=90 Identities=11% Similarity=0.107 Sum_probs=68.7
Q ss_pred hHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCcCCcccHHHHHHHHHcccC
Q 044786 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVAD 92 (340)
Q Consensus 13 ~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~ 92 (340)
...+|+.+.+.+.+.....+++.+... +-..+....+.++..|++.++.+...++++.... .-...++..+.+.|.
T Consensus 10 ~~~vi~~~~~~~~~~~l~~yLe~~~~~-~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 10 ISEVISAFEERNQPEELIEYLEALVKE-NKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGL 85 (143)
T ss_dssp SCCCHHHCTTTT-GGGCTCCHHHHHHT-STC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhc-ccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcch
Confidence 345788888899999999999999987 6667799999999999999998999998884332 334556777777777
Q ss_pred hhHHHHHHHHHHHh
Q 044786 93 YQECITLFAEMMKR 106 (340)
Q Consensus 93 ~~~a~~~~~~m~~~ 106 (340)
++++.-++.++...
T Consensus 86 ~~~a~~Ly~~~~~~ 99 (143)
T PF00637_consen 86 YEEAVYLYSKLGNH 99 (143)
T ss_dssp HHHHHHHHHCCTTH
T ss_pred HHHHHHHHHHcccH
Confidence 77777777765443
No 260
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=93.25 E-value=2.3 Score=30.79 Aligned_cols=93 Identities=8% Similarity=0.027 Sum_probs=66.6
Q ss_pred HHHHHhCCCccH--HHHHHHHHHHhccCCHHHHHHHHHHhhc--------CCcHHHHHHHHHHHHHcCc-hHHHHHHHHH
Q 044786 243 ANIVKIGLESDE--YVQCGLVDMYGKCRLLRDAERVFELIVD--------KKNIASWNAMLVGYIRNGL-YVEATKFLYL 311 (340)
Q Consensus 243 ~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~~li~~~~~~~~-~~~a~~~~~~ 311 (340)
..+.+.+..++. ...|.++.-....+++.....+++.+.. ..+..+|++++.+..+..- .--+..+|.-
T Consensus 26 ~y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~ 105 (145)
T PF13762_consen 26 PYMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNF 105 (145)
T ss_pred HHhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHH
Confidence 334444555544 3346666666667777777777766642 2356689999999976665 4456788999
Q ss_pred HHHcCCccchhHHHHHHHHhhhcC
Q 044786 312 MKASGIQIQESLINDLRIACSSIS 335 (340)
Q Consensus 312 m~~~g~~~~~~t~~~ll~a~~~~g 335 (340)
|++.+.++++.-|..+|.+|.+.-
T Consensus 106 Lk~~~~~~t~~dy~~li~~~l~g~ 129 (145)
T PF13762_consen 106 LKKNDIEFTPSDYSCLIKAALRGY 129 (145)
T ss_pred HHHcCCCCCHHHHHHHHHHHHcCC
Confidence 999999999999999999998753
No 261
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.19 E-value=2.3 Score=30.65 Aligned_cols=75 Identities=9% Similarity=-0.015 Sum_probs=40.4
Q ss_pred HHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 044786 87 YVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164 (340)
Q Consensus 87 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 164 (340)
..+.|++++|.+.|+.+...-... +.....--.++.++.+.++++.|...+++.++..+..-..-|...+.+++.
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g---~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFG---EYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCC---cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 345666666666666666652111 223345555666666666666666666666665544333344444444433
No 262
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=93.19 E-value=4 Score=33.31 Aligned_cols=70 Identities=11% Similarity=0.105 Sum_probs=56.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhc--CCcHHHHHHHHHHHHHcCchHHHHHHHHHHHH-----cCCccchhHHH
Q 044786 256 VQCGLVDMYGKCRLLRDAERVFELIVD--KKNIASWNAMLVGYIRNGLYVEATKFLYLMKA-----SGIQIQESLIN 325 (340)
Q Consensus 256 ~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~~~~~t~~ 325 (340)
+++..-..|..+|.+.+|.++.++... +-+...|-.|++.+...|+--.|.+-+++|.+ .|+..|...+.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsiee 357 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIEE 357 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHHH
Confidence 445666788999999999999999875 34778899999999999998888888887743 48877766554
No 263
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.14 E-value=3.7 Score=32.82 Aligned_cols=54 Identities=13% Similarity=0.031 Sum_probs=28.3
Q ss_pred HHHHHHhhcCHHHHHHHHHHcccC------ChhhHHHHHHHHhccCchhHHHHHHHHHhh
Q 044786 158 LINFYGKFRCLEDADFVFSQLKRH------NTVVWTAKIVNNCREGHFHQVFNDFKEMGR 211 (340)
Q Consensus 158 l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 211 (340)
+.+.|.+.|.+..|..-+++|.+. .....-.+..+|...|..++|...-+-+..
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 345566666666666656555533 112234455566666666666555444443
No 264
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.13 E-value=5.8 Score=35.04 Aligned_cols=79 Identities=11% Similarity=0.131 Sum_probs=53.6
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhhc-CC---cHHHHHHHHHHHHHcCchHHHHHHHHHHHHcCC-ccchhHHHHHHHHhh
Q 044786 258 CGLVDMYGKCRLLRDAERVFELIVD-KK---NIASWNAMLVGYIRNGLYVEATKFLYLMKASGI-QIQESLINDLRIACS 332 (340)
Q Consensus 258 ~~li~~~~~~~~~~~A~~~~~~~~~-~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~~~~~t~~~ll~a~~ 332 (340)
..+..++-+.|+.++|.+.|+++.+ .| +......|+.++...+.+.++..++.+-.+... +--...|+..|-.+.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 4466666778888888888888864 23 334667788888888888888888888643322 122356777666555
Q ss_pred hcCc
Q 044786 333 SISA 336 (340)
Q Consensus 333 ~~g~ 336 (340)
..|+
T Consensus 343 av~d 346 (539)
T PF04184_consen 343 AVGD 346 (539)
T ss_pred hhcc
Confidence 5554
No 265
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.11 E-value=7.5 Score=36.26 Aligned_cols=155 Identities=12% Similarity=0.077 Sum_probs=89.6
Q ss_pred HHHhhhccchhhHHHHHHHHHhhcCCCC---CHHHHHHHHHHHHhcCChhHHHHHHhhcCcCCcccHHHHHHHHHcccCh
Q 044786 17 IKECTFQKDSAGAFELLNHIRKRVNIKP---TLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADY 93 (340)
Q Consensus 17 i~~~~~~~~~~~a~~~~~~m~~~~g~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~ 93 (340)
|+=+.+.+.+++|+++-+.-. |..| ........|..+.-.|+.++|-...-.|...+..-|.--+.-+...++.
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~---~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l 439 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASI---GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQL 439 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhcc---CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhcccccc
Confidence 334456677788877766554 4555 4567778888888888888888888777766666666666666655554
Q ss_pred hHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHH---------cC-------CCCchhHHHH
Q 044786 94 QECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFK---------LG-------SSRNISLTGS 157 (340)
Q Consensus 94 ~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---------~~-------~~~~~~~~~~ 157 (340)
.....+ +.. |.+ +.+...|..++..+.. .+...-.++.++.-. .. -.-+...-..
T Consensus 440 ~~Ia~~---lPt---~~~--rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~ 510 (846)
T KOG2066|consen 440 TDIAPY---LPT---GPP--RLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEV 510 (846)
T ss_pred chhhcc---CCC---CCc--ccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHH
Confidence 432221 111 110 2344455666655555 222222111111000 00 0112233455
Q ss_pred HHHHHHhhcCHHHHHHHHHHcccCCh
Q 044786 158 LINFYGKFRCLEDADFVFSQLKRHNT 183 (340)
Q Consensus 158 l~~~~~~~~~~~~a~~~~~~~~~~~~ 183 (340)
|...|...+++++|..++-...++++
T Consensus 511 La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 511 LAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred HHHHHHHccChHHHHHHHHhccChHH
Confidence 88999999999999999888776643
No 266
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.98 E-value=4.5 Score=33.34 Aligned_cols=218 Identities=12% Similarity=0.040 Sum_probs=114.6
Q ss_pred HcccChhHHHHHHHHHHHhhcCCccccchHH-----HHHHHHHHhhhcc-chhhHHHHHHHHHHc--------CCCCch-
Q 044786 88 VDVADYQECITLFAEMMKRKKGHMLLVFPAW-----IIVCVLKACVCTM-NMELGKQVHGLLFKL--------GSSRNI- 152 (340)
Q Consensus 88 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~-----~~~~ll~~~~~~~-~~~~a~~~~~~~~~~--------~~~~~~- 152 (340)
.+.|+.+.|..++.+...... . ..|+.. ++..+.......+ +++.|...+++..+. ...|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~-~--~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~ 80 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLN-S--LDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGS 80 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHh-c--CCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHH
Confidence 355666666666666655421 1 122221 2333344444455 666666665544332 122332
Q ss_pred ----hHHHHHHHHHHhhcCHH---HHHHHHHHccc--C-ChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCChhhHH
Q 044786 153 ----SLTGSLINFYGKFRCLE---DADFVFSQLKR--H-NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFS 222 (340)
Q Consensus 153 ----~~~~~l~~~~~~~~~~~---~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~ 222 (340)
.+...++.+|...+..+ +|.++++.+.. + ...++-.-++.+.+.++.+++.+.+.+|...- .-....+.
T Consensus 81 elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~ 159 (278)
T PF08631_consen 81 ELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFD 159 (278)
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHH
Confidence 35667788888877654 56666666643 2 34456566777777899999999999998862 21334444
Q ss_pred HHHHhc---ccCCchhchHHHHHHHHHHhCCCccHH-HHH-HHHHH---Hhcc------CCHHHHHHHHHHhhc---CC-
Q 044786 223 SVLKAC---GGVDDDGNCGRQMHANIVKIGLESDEY-VQC-GLVDM---YGKC------RLLRDAERVFELIVD---KK- 284 (340)
Q Consensus 223 ~ll~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~li~~---~~~~------~~~~~A~~~~~~~~~---~~- 284 (340)
.++..+ ..... .. +...+..+....+.|... ... .++.. ..+. ++++...++++.+.. +|
T Consensus 160 ~~l~~i~~l~~~~~-~~-a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~l 237 (278)
T PF08631_consen 160 SILHHIKQLAEKSP-EL-AAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQL 237 (278)
T ss_pred HHHHHHHHHHhhCc-HH-HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCC
Confidence 444444 33332 23 444444444444555443 111 11111 1111 125555556664332 11
Q ss_pred ---cHHHHHHH----HHHHHHcCchHHHHHHHHH
Q 044786 285 ---NIASWNAM----LVGYIRNGLYVEATKFLYL 311 (340)
Q Consensus 285 ---~~~~~~~l----i~~~~~~~~~~~a~~~~~~ 311 (340)
...+..++ ...+.+.+++++|.++|+-
T Consensus 238 s~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 238 SAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYEL 271 (278)
T ss_pred CHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 22222233 2346688999999999984
No 267
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=92.78 E-value=2.5 Score=29.91 Aligned_cols=55 Identities=13% Similarity=0.001 Sum_probs=35.8
Q ss_pred HHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHc
Q 044786 86 GYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKL 146 (340)
Q Consensus 86 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 146 (340)
+....|+.+.|++.|.+.+..- +-....||.-..++.-.|+.++|+.=+++.++.
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~------P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL 106 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA------PERASAYNNRAQALRLQGDDEEALDDLNKALEL 106 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc------ccchHhhccHHHHHHHcCChHHHHHHHHHHHHh
Confidence 4566677777777777776652 345566676666666667777666666655543
No 268
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.78 E-value=0.26 Score=25.92 Aligned_cols=25 Identities=16% Similarity=0.308 Sum_probs=16.4
Q ss_pred HHHHHHHHHcccChhHHHHHHHHHH
Q 044786 80 WAVMIVGYVDVADYQECITLFAEMM 104 (340)
Q Consensus 80 ~~~li~~~~~~g~~~~a~~~~~~m~ 104 (340)
|+.|...|.+.|++++|+++|++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5566667777777777777777744
No 269
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.52 E-value=5.1 Score=32.79 Aligned_cols=119 Identities=8% Similarity=-0.030 Sum_probs=66.5
Q ss_pred HHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHcccCCh----hhHHHHHHHHhccCchh
Q 044786 125 KACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNT----VVWTAKIVNNCREGHFH 200 (340)
Q Consensus 125 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~li~~~~~~~~~~ 200 (340)
......|++.+|...|+........ +...-..+.++|...|+.+.|..++..+..... .....-|..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 3445667888888888777766544 344556677888888888888888888764311 11122233344444444
Q ss_pred HHHHHHHHHhhcccCC-ChhhHHHHHHhcccCCchhchHHHHHHHHHH
Q 044786 201 QVFNDFKEMGRERIKK-NSYTFSSVLKACGGVDDDGNCGRQMHANIVK 247 (340)
Q Consensus 201 ~a~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~ 247 (340)
+...+-++.-. .| |...-..+-..+...|+.+.+...++..+.+
T Consensus 221 ~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 221 EIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred CHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44444444333 24 3333334444555556665555555555554
No 270
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=92.13 E-value=0.1 Score=37.97 Aligned_cols=86 Identities=15% Similarity=0.100 Sum_probs=58.5
Q ss_pred HHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHcccCChhhHHHHHHHHhccCchhHH
Q 044786 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQV 202 (340)
Q Consensus 123 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 202 (340)
++..+.+.+.++...++++.+...+...+....+.++..|++.++.++..++++... ..-...++..|.+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~---~yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN---NYDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS---SS-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc---ccCHHHHHHHHHhcchHHHH
Confidence 456666777778888888888876666677788888888888877777777766322 23345566677777777777
Q ss_pred HHHHHHHhh
Q 044786 203 FNDFKEMGR 211 (340)
Q Consensus 203 ~~~~~~m~~ 211 (340)
.-++.++..
T Consensus 90 ~~Ly~~~~~ 98 (143)
T PF00637_consen 90 VYLYSKLGN 98 (143)
T ss_dssp HHHHHCCTT
T ss_pred HHHHHHccc
Confidence 777766543
No 271
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=91.57 E-value=6.1 Score=31.65 Aligned_cols=123 Identities=15% Similarity=0.134 Sum_probs=61.0
Q ss_pred HHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhh-
Q 044786 87 YVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF- 165 (340)
Q Consensus 87 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 165 (340)
-.+.|++++|.+.|+.+.....+- +....+.-.++-++.+.++++.|....++..+.-+.....-|..-|.+++..
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s---~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~ 120 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFS---PYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFF 120 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCC---cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhc
Confidence 345666666666666666553111 2334455555666666666666666666655543322222333333333322
Q ss_pred ------cCHHHHHHHHHHcc---cC--------Chh----------h--HHHHHHHHhccCchhHHHHHHHHHhhc
Q 044786 166 ------RCLEDADFVFSQLK---RH--------NTV----------V--WTAKIVNNCREGHFHQVFNDFKEMGRE 212 (340)
Q Consensus 166 ------~~~~~a~~~~~~~~---~~--------~~~----------~--~~~li~~~~~~~~~~~a~~~~~~m~~~ 212 (340)
.+...+.+.|..+. ++ |+. . =-.+.+-|.+.|.+..|..-+++|.+.
T Consensus 121 ~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 121 QIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred cCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 22223333333322 11 111 0 112345677777777787777777765
No 272
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.51 E-value=13 Score=35.21 Aligned_cols=18 Identities=11% Similarity=0.043 Sum_probs=12.0
Q ss_pred HhccCCHHHHHHHHHHhh
Q 044786 264 YGKCRLLRDAERVFELIV 281 (340)
Q Consensus 264 ~~~~~~~~~A~~~~~~~~ 281 (340)
+-..+++++|.+.++.+.
T Consensus 500 le~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 500 LEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHhcCHHHHHHHHhcCC
Confidence 334567777777777764
No 273
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=91.50 E-value=9 Score=33.48 Aligned_cols=72 Identities=17% Similarity=0.124 Sum_probs=39.1
Q ss_pred HHHHHHHhCCCccHH-HHHHHHHHHhccCCHHHHHHHHHHhhc-------CCcHHHHHHHHHHHHHcCchHHHHHHHHHH
Q 044786 241 MHANIVKIGLESDEY-VQCGLVDMYGKCRLLRDAERVFELIVD-------KKNIASWNAMLVGYIRNGLYVEATKFLYLM 312 (340)
Q Consensus 241 ~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~A~~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 312 (340)
+.......-+.|+-. +...|+..+.+ +.+++..+.+.+.. +.=+.++..++....+.++..+|.+.+.-+
T Consensus 247 ~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL 324 (549)
T PF07079_consen 247 ILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALL 324 (549)
T ss_pred HHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 333334444555433 33444444444 45555555444432 123456777777777777777777776665
Q ss_pred HH
Q 044786 313 KA 314 (340)
Q Consensus 313 ~~ 314 (340)
..
T Consensus 325 ~~ 326 (549)
T PF07079_consen 325 KI 326 (549)
T ss_pred Hh
Confidence 43
No 274
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.12 E-value=0.74 Score=24.74 Aligned_cols=28 Identities=25% Similarity=0.291 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHH
Q 044786 287 ASWNAMLVGYIRNGLYVEATKFLYLMKA 314 (340)
Q Consensus 287 ~~~~~li~~~~~~~~~~~a~~~~~~m~~ 314 (340)
.+++.|...|...|++++|+.++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4667777788888888888887777643
No 275
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.07 E-value=5.1 Score=29.92 Aligned_cols=124 Identities=8% Similarity=-0.014 Sum_probs=74.9
Q ss_pred cchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHcccCChhhHHHHHHHH
Q 044786 114 VFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNN 193 (340)
Q Consensus 114 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~ 193 (340)
+|+...+..+++.+.+.|++.... .+.+.++-+|.......+-.+. +....+.++=-+|.++=...+..+++.+
T Consensus 26 ~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkRL~~~~~~iievL 99 (167)
T PF07035_consen 26 PVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKRLGTAYEEIIEVL 99 (167)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 788889999999999998865444 4555666666555444443222 2333444444444443333566777888
Q ss_pred hccCchhHHHHHHHHHhhcccCCChhhHHHHHHhcccCCchhchHHHHHHHHHHh
Q 044786 194 CREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKI 248 (340)
Q Consensus 194 ~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~ 248 (340)
...|++-+|+++.+..... +......++.+-.+.++. .....+++.....
T Consensus 100 L~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~-~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 100 LSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDD-QLFYAVFRFFEER 149 (167)
T ss_pred HhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCH-HHHHHHHHHHHHh
Confidence 8999999999998876332 122234566666666664 2255555555544
No 276
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=91.03 E-value=13 Score=34.48 Aligned_cols=142 Identities=14% Similarity=0.052 Sum_probs=75.8
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHhhcCc-CCcc------------cHHHHHHHHHcccChhHHHHHHHHHHHhhcC
Q 044786 43 KPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL-RDFN------------SWAVMIVGYVDVADYQECITLFAEMMKRKKG 109 (340)
Q Consensus 43 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~~~------------~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 109 (340)
.|.+..|..|.......-.++.|+..|=+... +.+. .-.+=|.+| -|++++|+++|-+|-.++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhh--
Confidence 57788888888777777777777777755441 1111 112222332 478888888887776552
Q ss_pred CccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCc----hhHHHHHHHHHHhhcCHHHHHHHHHHcccCChhh
Q 044786 110 HMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRN----ISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVV 185 (340)
Q Consensus 110 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 185 (340)
..+....+.|++-.+.++++ ..|-..| ...++.+.+.+.....|++|.+.|..-...
T Consensus 765 ------------LAielr~klgDwfrV~qL~r---~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---- 825 (1189)
T KOG2041|consen 765 ------------LAIELRKKLGDWFRVYQLIR---NGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---- 825 (1189)
T ss_pred ------------hhHHHHHhhhhHHHHHHHHH---ccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch----
Confidence 23444555666655554433 2121111 234556666666666666666666543211
Q ss_pred HHHHHHHHhccCchhHHHHHHHH
Q 044786 186 WTAKIVNNCREGHFHQVFNDFKE 208 (340)
Q Consensus 186 ~~~li~~~~~~~~~~~a~~~~~~ 208 (340)
...+.++.+...+++-..+-+.
T Consensus 826 -e~~~ecly~le~f~~LE~la~~ 847 (1189)
T KOG2041|consen 826 -ENQIECLYRLELFGELEVLART 847 (1189)
T ss_pred -HhHHHHHHHHHhhhhHHHHHHh
Confidence 2234444444444444444333
No 277
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.03 E-value=6.8 Score=31.21 Aligned_cols=202 Identities=10% Similarity=0.066 Sum_probs=109.3
Q ss_pred HHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHH
Q 044786 80 WAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLI 159 (340)
Q Consensus 80 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 159 (340)
|.-...+|-...++++|...+.+..+.. ..+...|+ .. ..++.|-.+.+++.+.. --+..|+...
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~y------Ennrslfh-AA------KayEqaamLake~~kls--Evvdl~eKAs 98 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKGY------ENNRSLFH-AA------KAYEQAAMLAKELSKLS--EVVDLYEKAS 98 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHH------HhcccHHH-HH------HHHHHHHHHHHHHHHhH--HHHHHHHHHH
Confidence 4445556667777777777776665432 22222222 12 23444555555554432 1234567777
Q ss_pred HHHHhhcCHHHHHHHHHHcccCChhhHHHHHHHHhccCchhHHHHHHHHHhhc---c--cCCChhhHHHHHHhcccCCch
Q 044786 160 NFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRE---R--IKKNSYTFSSVLKACGGVDDD 234 (340)
Q Consensus 160 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~--~~p~~~t~~~ll~~~~~~~~~ 234 (340)
..|..+|..+.|-..+++.-+ ...+.++++|+.+|++-..- + .+--...|..+-..+.+...+
T Consensus 99 ~lY~E~GspdtAAmaleKAak------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf 166 (308)
T KOG1585|consen 99 ELYVECGSPDTAAMALEKAAK------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKF 166 (308)
T ss_pred HHHHHhCCcchHHHHHHHHHH------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHh
Confidence 788888887777666665321 11234445555555443221 0 000112233444455666666
Q ss_pred hchHHHHHHHHH---HhCCCccH-HHHHHHHHHHhccCCHHHHHHHHHHhhc------CCcHHHHHHHHHHHHHcCchHH
Q 044786 235 GNCGRQMHANIV---KIGLESDE-YVQCGLVDMYGKCRLLRDAERVFELIVD------KKNIASWNAMLVGYIRNGLYVE 304 (340)
Q Consensus 235 ~~~~~~~~~~~~---~~~~~~~~-~~~~~li~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~~li~~~~~~~~~~~ 304 (340)
.+++..+..... +..--++. ..|-..|-.|.-..++..|++.++.--+ +.+..+...|+.+|- .|+.++
T Consensus 167 ~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~ 245 (308)
T KOG1585|consen 167 TEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEE 245 (308)
T ss_pred hHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHH
Confidence 665555443221 11112222 3455666677777899999999987433 236678888888874 567777
Q ss_pred HHHHH
Q 044786 305 ATKFL 309 (340)
Q Consensus 305 a~~~~ 309 (340)
+.+++
T Consensus 246 ~~kvl 250 (308)
T KOG1585|consen 246 IKKVL 250 (308)
T ss_pred HHHHH
Confidence 66554
No 278
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=90.98 E-value=10 Score=33.16 Aligned_cols=143 Identities=13% Similarity=0.097 Sum_probs=76.4
Q ss_pred ChhhHHHHHHHHhccCchhHHHHHHHHHhhcc-cCCChhhHHHHHHhcccCCchhchHHHHHHHHHHhCCCccHHHHHHH
Q 044786 182 NTVVWTAKIVNNCREGHFHQVFNDFKEMGRER-IKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGL 260 (340)
Q Consensus 182 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 260 (340)
-..+|...|.+-.+..-.+.|..+|-+..+.| +.++...+++++.-++.... ..+..+++.=... ++-++.--+-.
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~--~ta~~ifelGl~~-f~d~~~y~~ky 472 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDR--ATAYNIFELGLLK-FPDSTLYKEKY 472 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCc--chHHHHHHHHHHh-CCCchHHHHHH
Confidence 34455566666666666666666776666666 45566666666666554433 2255555433222 12222222445
Q ss_pred HHHHhccCCHHHHHHHHHHhhcC--Cc--HHHHHHHHHHHHHcCchHHHHHHHHHHHHcCCccchhHHHHHHH
Q 044786 261 VDMYGKCRLLRDAERVFELIVDK--KN--IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRI 329 (340)
Q Consensus 261 i~~~~~~~~~~~A~~~~~~~~~~--~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~ 329 (340)
+..+...++-+.|..+|+....+ .+ ...|..+|.-=..-|+...+..+=++|.+. -|...+...+.+
T Consensus 473 l~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~S 543 (660)
T COG5107 473 LLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTS 543 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHH
Confidence 55556666666777777643321 11 345666666666666666666666666443 344444333333
No 279
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.76 E-value=8.9 Score=32.11 Aligned_cols=149 Identities=3% Similarity=-0.095 Sum_probs=98.3
Q ss_pred hcCChhHHHHHHhhcCc---CCcccHHHHHHHHHcccChhHHHHHHHHHHHhh-cCCccccchHHHHHHHHHHhhhccch
Q 044786 58 SCGQLDTARQLFDEMPL---RDFNSWAVMIVGYVDVADYQECITLFAEMMKRK-KGHMLLVFPAWIIVCVLKACVCTMNM 133 (340)
Q Consensus 58 ~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~~~~~~~ll~~~~~~~~~ 133 (340)
-.|++.+|-..++++.+ .|..+++.--.++.-.|+.+.....++++...- .++ +-.+.+-....-++...|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dl---p~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADL---PCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCC---cHHHHHHHHHHhhHHHhccc
Confidence 34677777777777763 366677777788888888888888888876552 122 22333444444555677888
Q ss_pred hhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHcccC----C---hhhHHHHHHHHhccCchhHHHHHH
Q 044786 134 ELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH----N---TVVWTAKIVNNCREGHFHQVFNDF 206 (340)
Q Consensus 134 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~---~~~~~~li~~~~~~~~~~~a~~~~ 206 (340)
++|++.-++..+.+.. |.....++...+-..|+..++.+...+-... . ..-|-...-.+...+.++.|+++|
T Consensus 192 ~dAEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 8888888777776633 5666677777888888888888876655432 1 111333344556678899999998
Q ss_pred HHHh
Q 044786 207 KEMG 210 (340)
Q Consensus 207 ~~m~ 210 (340)
+.-.
T Consensus 271 D~ei 274 (491)
T KOG2610|consen 271 DREI 274 (491)
T ss_pred HHHH
Confidence 7643
No 280
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=90.49 E-value=8.6 Score=31.48 Aligned_cols=137 Identities=12% Similarity=0.136 Sum_probs=92.4
Q ss_pred chhHHHHHHHHHhh-cccCCChhhHHHHHHhccc-CCchhchHHHHHHHHH-HhCCCccHHHHHHHHHHHhccCCHHHHH
Q 044786 198 HFHQVFNDFKEMGR-ERIKKNSYTFSSVLKACGG-VDDDGNCGRQMHANIV-KIGLESDEYVQCGLVDMYGKCRLLRDAE 274 (340)
Q Consensus 198 ~~~~a~~~~~~m~~-~~~~p~~~t~~~ll~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~~~~~~A~ 274 (340)
.+.+|+.+|+.... ..+--|..+...+++.... .+..-.+..++...+. ..+-.++..+...+++.+++.+++..-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34566677764322 2345566677777776654 2222233444444444 3345678888889999999999999999
Q ss_pred HHHHHhhcC----CcHHHHHHHHHHHHHcCchHHHHHHHHH-----HHHcCCccchhHHHHHHHHhhhc
Q 044786 275 RVFELIVDK----KNIASWNAMLVGYIRNGLYVEATKFLYL-----MKASGIQIQESLINDLRIACSSI 334 (340)
Q Consensus 275 ~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~-----m~~~g~~~~~~t~~~ll~a~~~~ 334 (340)
++++.-... .|...|..+|......|+..-..++.++ ++..|+..++..-..+-+.+...
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~~v 291 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFKKV 291 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHHhc
Confidence 999887653 4888999999999999998766666555 34446677777666665555443
No 281
>PRK11906 transcriptional regulator; Provisional
Probab=90.32 E-value=12 Score=32.91 Aligned_cols=139 Identities=9% Similarity=-0.029 Sum_probs=81.8
Q ss_pred ChhHHHHHHhhcC---cCCc---ccHHHHHHHHH---------cccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHH
Q 044786 61 QLDTARQLFDEMP---LRDF---NSWAVMIVGYV---------DVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLK 125 (340)
Q Consensus 61 ~~~~a~~~~~~~~---~~~~---~~~~~li~~~~---------~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~ 125 (340)
..+.|..+|.+.. +-|+ ..|..+..++. ...+..+|.++-++..+.+ +.|......+..
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld------~~Da~a~~~~g~ 346 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT------TVDGKILAIMGL 346 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC------CCCHHHHHHHHH
Confidence 4567888888776 3332 23333332221 1234456677777777765 567777777777
Q ss_pred HhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHcccCC-----hhhHHHHHHHHhccCchh
Q 044786 126 ACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN-----TVVWTAKIVNNCREGHFH 200 (340)
Q Consensus 126 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~ 200 (340)
+....++++.+...|++....++. ...+|....-...-.|+.++|.+.+++..+-+ .......|..|+..+ .+
T Consensus 347 ~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~ 424 (458)
T PRK11906 347 ITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LK 424 (458)
T ss_pred HHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hh
Confidence 777777788888888888777543 33444444444555788888888888754332 223333344555443 45
Q ss_pred HHHHHHH
Q 044786 201 QVFNDFK 207 (340)
Q Consensus 201 ~a~~~~~ 207 (340)
.|+.+|-
T Consensus 425 ~~~~~~~ 431 (458)
T PRK11906 425 NNIKLYY 431 (458)
T ss_pred hhHHHHh
Confidence 5555553
No 282
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.04 E-value=6.6 Score=29.47 Aligned_cols=128 Identities=11% Similarity=0.006 Sum_probs=68.2
Q ss_pred hHHHHHHHHHHhhcCHHHHHHHHHHcccCChhhHHHHH-----HHHhccCchhHHHHHHHHHhhcccCCChh-hHHHHHH
Q 044786 153 SLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKI-----VNNCREGHFHQVFNDFKEMGRERIKKNSY-TFSSVLK 226 (340)
Q Consensus 153 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li-----~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-t~~~ll~ 226 (340)
..|..-++ +...+..++|+.-|..+.+.+.-.|-.|. ....+.|+...|...|.+.-...-.|-.. -...+=.
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlra 138 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRA 138 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHH
Confidence 34443333 34556777888888887776555554432 34456788888888888887654344322 1111212
Q ss_pred h--cccCCchhchHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhc
Q 044786 227 A--CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282 (340)
Q Consensus 227 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 282 (340)
+ +...|.+++ ...-.+-+...+-+.-...-..|--+-.+.|++..|.+.|+.+..
T Consensus 139 a~lLvD~gsy~d-V~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 139 AYLLVDNGSYDD-VSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHhccccHHH-HHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 2 344555544 222222222222222333344555555667777777777776654
No 283
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.92 E-value=0.97 Score=37.06 Aligned_cols=109 Identities=6% Similarity=0.002 Sum_probs=63.7
Q ss_pred hcccCCChhhHHHHHHhcccCCchhchHHHHHHHHHH--hCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhc---CCc
Q 044786 211 RERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVK--IGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD---KKN 285 (340)
Q Consensus 211 ~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~ 285 (340)
..|......+...++..-.....++++...++..-.. .-..|+...+ +.++.+.+ -+++++..++..=.. -||
T Consensus 57 ~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irlllk-y~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 57 ERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLLLK-YDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred hcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHHHc-cChHHHHHHHhCcchhccccc
Confidence 3455556667777777666666766644444332221 1112222222 23333333 245566655543322 278
Q ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHHHHcCCccch
Q 044786 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQE 321 (340)
Q Consensus 286 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 321 (340)
..+++.+|+.+.+.+++.+|.++.-.|.....--++
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~qe~~~ne 170 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQEAFENE 170 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhhH
Confidence 899999999999999999999988887666433333
No 284
>PRK09687 putative lyase; Provisional
Probab=89.76 E-value=10 Score=31.28 Aligned_cols=141 Identities=9% Similarity=-0.064 Sum_probs=83.6
Q ss_pred cCChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCChhhHHHHHHhcccCCchhchHHHHHHHHHHhCCCccHHHHHH
Q 044786 180 RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCG 259 (340)
Q Consensus 180 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (340)
.++..+-...+.++.+.++ .+++..+-.+.+ .+|...-...+.++.+.+.-...+...+..+. -.++..+-..
T Consensus 139 D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L---~D~~~~VR~~ 211 (280)
T PRK09687 139 DKSTNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAML---QDKNEEIRIE 211 (280)
T ss_pred CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHh---cCCChHHHHH
Confidence 3455555556666666665 456666655554 24445555555666654321111222222222 2456666777
Q ss_pred HHHHHhccCCHHHHHHHHHHhhcCCcHHHHHHHHHHHHHcCchHHHHHHHHHHHHcCCccchhHHHHHHHHhhh
Q 044786 260 LVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSS 333 (340)
Q Consensus 260 li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~a~~~ 333 (340)
.+.++.+.++.+....+.+.+ ..+++ .-..+.++...|.. +|+..+.++... .||..+-...+.+|.+
T Consensus 212 A~~aLg~~~~~~av~~Li~~L-~~~~~--~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 212 AIIGLALRKDKRVLSVLIKEL-KKGTV--GDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLKR 279 (280)
T ss_pred HHHHHHccCChhHHHHHHHHH-cCCch--HHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHhc
Confidence 888888888754444444444 34443 34677888888885 688888888764 4588877777877764
No 285
>PRK09687 putative lyase; Provisional
Probab=89.70 E-value=10 Score=31.25 Aligned_cols=235 Identities=9% Similarity=-0.046 Sum_probs=147.7
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHhhcCcCCcccHHHHHHHHHcccCh----hHHHHHHHHHHHhhcCCccccchHHH
Q 044786 44 PTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADY----QECITLFAEMMKRKKGHMLLVFPAWI 119 (340)
Q Consensus 44 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~----~~a~~~~~~m~~~~~~~~~~~~~~~~ 119 (340)
+|..+....+..+...|..+-...+..-+..+|...=...+.++...|+. .++...+..+... .++..+
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~-------D~d~~V 107 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE-------DKSACV 107 (280)
T ss_pred CCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc-------CCCHHH
Confidence 46677777777887777654444444444466776667778888888864 4577777776554 577777
Q ss_pred HHHHHHHhhhccchhh--HHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHcccCChhhHHHHHHHHhccC
Q 044786 120 IVCVLKACVCTMNMEL--GKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREG 197 (340)
Q Consensus 120 ~~~ll~~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~ 197 (340)
-...+.++...+.... -.+....+...-..++..+-...+.++.+.++-+....+..-+..++...-...+.++.+.+
T Consensus 108 R~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~ 187 (280)
T PRK09687 108 RASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNK 187 (280)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCC
Confidence 7777777766643221 12233333333334466666778888888887555555555556666666666666666653
Q ss_pred -chhHHHHHHHHHhhcccCCChhhHHHHHHhcccCCchhchHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHH
Q 044786 198 -HFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERV 276 (340)
Q Consensus 198 -~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~ 276 (340)
...++...+..+.. .++...-...+.++.+.++. ++...+.+.+.. + + ..-..+.++...|.. +|...
T Consensus 188 ~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~-~---~--~~~~a~~ALg~ig~~-~a~p~ 256 (280)
T PRK09687 188 YDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKK-G---T--VGDLIIEAAGELGDK-TLLPV 256 (280)
T ss_pred CCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcC-C---c--hHHHHHHHHHhcCCH-hHHHH
Confidence 24466666666664 46777778888888888885 545555555443 2 2 234677888888885 57777
Q ss_pred HHHhhc-CCcHHHHHHHHHHH
Q 044786 277 FELIVD-KKNIASWNAMLVGY 296 (340)
Q Consensus 277 ~~~~~~-~~~~~~~~~li~~~ 296 (340)
+..+.. .+|..+-..-+.++
T Consensus 257 L~~l~~~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 257 LDTLLYKFDDNEIITKAIDKL 277 (280)
T ss_pred HHHHHhhCCChhHHHHHHHHH
Confidence 777664 56666555444444
No 286
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=89.62 E-value=12 Score=31.79 Aligned_cols=214 Identities=8% Similarity=0.081 Sum_probs=118.6
Q ss_pred hccchhhHHHHHHHHHhhcC-CCCCHHHHHHHHHHHHhcCChhHHHHHHh----hcCc-CC----cccHHHHHHHHHccc
Q 044786 22 FQKDSAGAFELLNHIRKRVN-IKPTLLFLNRLLLMHVSCGQLDTARQLFD----EMPL-RD----FNSWAVMIVGYVDVA 91 (340)
Q Consensus 22 ~~~~~~~a~~~~~~m~~~~g-~~~~~~~~~~li~~~~~~~~~~~a~~~~~----~~~~-~~----~~~~~~li~~~~~~g 91 (340)
...+..+|+..|..-..+.. ...-..++..+..+.++.|..++++..-- ...+ .| ...|-.+.+++-+.-
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~ 97 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLC 97 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677888888777665411 11123566777788888888877665421 1111 11 124555666666666
Q ss_pred ChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcC-----CCCchhHHHHHHHHHHhhc
Q 044786 92 DYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLG-----SSRNISLTGSLINFYGKFR 166 (340)
Q Consensus 92 ~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~ 166 (340)
++.+++.+-+.-.... |...-.........+..++...+.++++++.|+...+.- ......+|..|.+.|.+..
T Consensus 98 ~f~kt~~y~k~~l~lp-gt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~ 176 (518)
T KOG1941|consen 98 EFHKTISYCKTCLGLP-GTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK 176 (518)
T ss_pred HhhhHHHHHHHHhcCC-CCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence 6666666555544432 221101122344456777777888888888887665432 1223457788888888888
Q ss_pred CHHHHHHHHHHcc-------cCChhh-HH-----HHHHHHhccCchhHHHHHHHHHhh----cccCCC-hhhHHHHHHhc
Q 044786 167 CLEDADFVFSQLK-------RHNTVV-WT-----AKIVNNCREGHFHQVFNDFKEMGR----ERIKKN-SYTFSSVLKAC 228 (340)
Q Consensus 167 ~~~~a~~~~~~~~-------~~~~~~-~~-----~li~~~~~~~~~~~a~~~~~~m~~----~~~~p~-~~t~~~ll~~~ 228 (340)
++++|.-...+.. -.|... |. .|--++-..|+...|.+.-++..+ .|-+|. ......+-..|
T Consensus 177 D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIy 256 (518)
T KOG1941|consen 177 DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIY 256 (518)
T ss_pred hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 8888765544332 122221 22 234455666777777766666543 232222 12233444556
Q ss_pred ccCCchhc
Q 044786 229 GGVDDDGN 236 (340)
Q Consensus 229 ~~~~~~~~ 236 (340)
...|+.+.
T Consensus 257 R~~gd~e~ 264 (518)
T KOG1941|consen 257 RSRGDLER 264 (518)
T ss_pred HhcccHhH
Confidence 66666654
No 287
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.53 E-value=9 Score=30.31 Aligned_cols=18 Identities=11% Similarity=0.226 Sum_probs=12.6
Q ss_pred hccCCHHHHHHHHHHhhc
Q 044786 265 GKCRLLRDAERVFELIVD 282 (340)
Q Consensus 265 ~~~~~~~~A~~~~~~~~~ 282 (340)
+..+++.+|.++|+++..
T Consensus 165 a~leqY~~Ai~iyeqva~ 182 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVAR 182 (288)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455777788888877654
No 288
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.52 E-value=6.5 Score=28.63 Aligned_cols=19 Identities=16% Similarity=0.503 Sum_probs=8.5
Q ss_pred HcccChhHHHHHHHHHHHh
Q 044786 88 VDVADYQECITLFAEMMKR 106 (340)
Q Consensus 88 ~~~g~~~~a~~~~~~m~~~ 106 (340)
...|+|++|.++|++..+.
T Consensus 55 i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 55 IARGNYDEAARILRELLSS 73 (153)
T ss_pred HHcCCHHHHHHHHHhhhcc
Confidence 3444444444444444433
No 289
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.48 E-value=2.7 Score=34.59 Aligned_cols=97 Identities=8% Similarity=0.028 Sum_probs=49.5
Q ss_pred cHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHH
Q 044786 79 SWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158 (340)
Q Consensus 79 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 158 (340)
+...++..-....+++.++..+-+++...... .....+-..+++.|.+ -+.++++.++..-.+.|+-||.++++.+
T Consensus 66 ~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~---~~~~~~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf~~c~l 141 (418)
T KOG4570|consen 66 TVDRLVDVISSREEIDDAEYYLYKLRHSPNAW---YLRNWTIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQFTFCLL 141 (418)
T ss_pred ehhhhhhccccccchhHHHHHHHHHhcCcchh---hhccccHHHHHHHHHc-cChHHHHHHHhCcchhccccchhhHHHH
Confidence 34444444444555666665555554331111 0111111222222222 2455666666666666777777777777
Q ss_pred HHHHHhhcCHHHHHHHHHHcc
Q 044786 159 INFYGKFRCLEDADFVFSQLK 179 (340)
Q Consensus 159 ~~~~~~~~~~~~a~~~~~~~~ 179 (340)
++.+.+.+++.+|.++.-.|.
T Consensus 142 ~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 142 MDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred HHHHHhcccHHHHHHHHHHHH
Confidence 777777777666666655554
No 290
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.42 E-value=5.7 Score=35.93 Aligned_cols=39 Identities=23% Similarity=0.182 Sum_probs=19.5
Q ss_pred hccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 044786 22 FQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQL 68 (340)
Q Consensus 22 ~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~ 68 (340)
-.|+++.|..++..+.+ ...+.+.+.+.+.|-.++|+++
T Consensus 598 mrrd~~~a~~vLp~I~k--------~~rt~va~Fle~~g~~e~AL~~ 636 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPK--------EIRTKVAHFLESQGMKEQALEL 636 (794)
T ss_pred hhccccccccccccCch--------hhhhhHHhHhhhccchHhhhhc
Confidence 34666666665444332 2233444445555555555554
No 291
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=89.31 E-value=2 Score=24.36 Aligned_cols=37 Identities=24% Similarity=0.336 Sum_probs=31.8
Q ss_pred HHHHcCchHHHHHHHHHHHHcCCccchhHHHHHHHHh
Q 044786 295 GYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331 (340)
Q Consensus 295 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~a~ 331 (340)
...+.|-.+++..++++|.+.|+..++..+..+++-+
T Consensus 11 ~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~~ 47 (48)
T PF11848_consen 11 LAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRRA 47 (48)
T ss_pred HHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHHc
Confidence 3456788889999999999999999999999988753
No 292
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=89.25 E-value=0.58 Score=24.22 Aligned_cols=21 Identities=29% Similarity=0.264 Sum_probs=9.9
Q ss_pred chhHHHHHHHHHHhhcCHHHH
Q 044786 151 NISLTGSLINFYGKFRCLEDA 171 (340)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~~~a 171 (340)
+...|+.+...|...|++++|
T Consensus 12 n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhh
Confidence 344444444444444444444
No 293
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=89.05 E-value=2 Score=28.51 Aligned_cols=61 Identities=10% Similarity=0.102 Sum_probs=45.2
Q ss_pred chhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCcC---CcccHHHHHHH
Q 044786 25 DSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLR---DFNSWAVMIVG 86 (340)
Q Consensus 25 ~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~ 86 (340)
|.=++.+-+..+... .+-|++.+..+.+++|-|.+++..|.++|+.++.+ +...|..++.-
T Consensus 22 D~we~rr~mN~l~~~-DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~lqe 85 (103)
T cd00923 22 DGWELRRGLNNLFGY-DLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYILQE 85 (103)
T ss_pred cHHHHHHHHHHHhcc-ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHHHH
Confidence 444556666666666 78899999999999999999999999999977722 33457666653
No 294
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=89.05 E-value=1.6 Score=22.20 Aligned_cols=29 Identities=17% Similarity=0.211 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHc
Q 044786 287 ASWNAMLVGYIRNGLYVEATKFLYLMKAS 315 (340)
Q Consensus 287 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 315 (340)
.+|..+...|...|++++|+..|++..+.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 46777778888888888888888887654
No 295
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=88.88 E-value=1.2 Score=22.64 Aligned_cols=28 Identities=14% Similarity=0.428 Sum_probs=19.0
Q ss_pred cHHHHHHHHHcccChhHHHHHHHHHHHh
Q 044786 79 SWAVMIVGYVDVADYQECITLFAEMMKR 106 (340)
Q Consensus 79 ~~~~li~~~~~~g~~~~a~~~~~~m~~~ 106 (340)
+|..+...+...|++++|+..|++.++.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 4566666777777777777777777665
No 296
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=88.80 E-value=3.5 Score=28.30 Aligned_cols=27 Identities=19% Similarity=0.269 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHH
Q 044786 288 SWNAMLVGYIRNGLYVEATKFLYLMKA 314 (340)
Q Consensus 288 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 314 (340)
-|..|+.-|...|..++|++++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 688889999999999999999998877
No 297
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=88.48 E-value=1.3 Score=29.59 Aligned_cols=76 Identities=8% Similarity=0.076 Sum_probs=47.6
Q ss_pred chhHHHHHHhhhcc--chhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCc---CCcccHHHHHH
Q 044786 11 DMYTCLIKECTFQK--DSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL---RDFNSWAVMIV 85 (340)
Q Consensus 11 ~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~ 85 (340)
+.|..--..+.... |.=+..+-+..+... .+-|++.+..+.+.+|-|.+++..|.++|+.++. .....|..++.
T Consensus 9 eeF~ary~~~F~~~~iD~we~rrglN~l~~~-DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 9 EEFDARYEKYFNRPDIDGWELRRGLNNLFGY-DLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHHHH-TT--HHHHHHHHHHHTTS-SB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHH
T ss_pred HHHHHHHHHHhCCccccHHHHHHHHHHHhcc-ccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 33443333344333 333456666666666 7889999999999999999999999999998872 22227877775
Q ss_pred HH
Q 044786 86 GY 87 (340)
Q Consensus 86 ~~ 87 (340)
-.
T Consensus 88 El 89 (108)
T PF02284_consen 88 EL 89 (108)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 298
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=87.79 E-value=1.6 Score=22.09 Aligned_cols=27 Identities=22% Similarity=0.582 Sum_probs=17.7
Q ss_pred HHHHHHHHHcccChhHHHHHHHHHHHh
Q 044786 80 WAVMIVGYVDVADYQECITLFAEMMKR 106 (340)
Q Consensus 80 ~~~li~~~~~~g~~~~a~~~~~~m~~~ 106 (340)
|..+...+...|++++|++.|++..+.
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 455666677777777777777777665
No 299
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=87.72 E-value=1.3 Score=23.73 Aligned_cols=28 Identities=7% Similarity=0.076 Sum_probs=19.9
Q ss_pred hhHHHHHHHHhccCchhHHHHHHHHHhh
Q 044786 184 VVWTAKIVNNCREGHFHQVFNDFKEMGR 211 (340)
Q Consensus 184 ~~~~~li~~~~~~~~~~~a~~~~~~m~~ 211 (340)
.+++.+...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4567777777788888888887777654
No 300
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=87.53 E-value=17 Score=31.18 Aligned_cols=247 Identities=12% Similarity=0.016 Sum_probs=138.6
Q ss_pred ccchhhHHHHHHHHHhhcCCCCCHH--HHHHHHHHHHhcCChhHHHHHHhhcCcC---CcccHHHHHHHHHcccChhHHH
Q 044786 23 QKDSAGAFELLNHIRKRVNIKPTLL--FLNRLLLMHVSCGQLDTARQLFDEMPLR---DFNSWAVMIVGYVDVADYQECI 97 (340)
Q Consensus 23 ~~~~~~a~~~~~~m~~~~g~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~ 97 (340)
.|+++.|.+-|+-|... |... -...|.-.--+.|+.+.|.++-++.... =.-.+...+...+..|+|+.|+
T Consensus 133 eG~~~~Ar~kfeAMl~d----PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~Al 208 (531)
T COG3898 133 EGDYEDARKKFEAMLDD----PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGAL 208 (531)
T ss_pred cCchHHHHHHHHHHhcC----hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHH
Confidence 46777777777776643 1111 1112222223456666666666555422 1225677888889999999999
Q ss_pred HHHHHHHHhhcCCccccchHH--HHHHHHHHhhhc---cchhhHHHHHHHHHHcCCCCchhH-HHHHHHHHHhhcCHHHH
Q 044786 98 TLFAEMMKRKKGHMLLVFPAW--IIVCVLKACVCT---MNMELGKQVHGLLFKLGSSRNISL-TGSLINFYGKFRCLEDA 171 (340)
Q Consensus 98 ~~~~~m~~~~~~~~~~~~~~~--~~~~ll~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a 171 (340)
++++.-+... -+ .++.. .-..|+.+-+.. .+...|...-.+..+ +.|+..- -..-..++.+.|++.++
T Consensus 209 kLvd~~~~~~-vi---e~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg 282 (531)
T COG3898 209 KLVDAQRAAK-VI---EKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKG 282 (531)
T ss_pred HHHHHHHHHH-hh---chhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhh
Confidence 9998877663 22 33332 222333222211 234444444333333 3444322 22345688899999999
Q ss_pred HHHHHHcccCChhhHHHHHHHHhccCchhHHHHHHHHHhh-cccCCC-hhhHHHHHHhcccCCchhchHHHHHHHHHHhC
Q 044786 172 DFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGR-ERIKKN-SYTFSSVLKACGGVDDDGNCGRQMHANIVKIG 249 (340)
Q Consensus 172 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~p~-~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 249 (340)
-.+++.+-+...+.--..+-.+.+.| +.+.+-+++..+ ..++|+ ...--.+..+-...|++.. +..--+...+
T Consensus 283 ~~ilE~aWK~ePHP~ia~lY~~ar~g--dta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~-ARa~Aeaa~r-- 357 (531)
T COG3898 283 SKILETAWKAEPHPDIALLYVRARSG--DTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSA-ARAKAEAAAR-- 357 (531)
T ss_pred hhHHHHHHhcCCChHHHHHHHHhcCC--CcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHH-HHHHHHHHhh--
Confidence 99999987554433222232334444 445555554433 235665 3444455566666777643 4444443333
Q ss_pred CCccHHHHHHHHHHHhc-cCCHHHHHHHHHHhhcCC
Q 044786 250 LESDEYVQCGLVDMYGK-CRLLRDAERVFELIVDKK 284 (340)
Q Consensus 250 ~~~~~~~~~~li~~~~~-~~~~~~A~~~~~~~~~~~ 284 (340)
..|....|..|.+.-.. .|+-.++...+.+....|
T Consensus 358 ~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 358 EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence 57888888777776544 489999998887776533
No 301
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=87.44 E-value=2.5 Score=28.32 Aligned_cols=57 Identities=19% Similarity=0.125 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhcC-CcHH-HHHHHHH
Q 044786 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK-KNIA-SWNAMLV 294 (340)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-~~~~-~~~~li~ 294 (340)
...-+..+....+.|.+.+..+.+.+|-+.+++..|.++|+.++.+ .+.. .|..+++
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 4444555566677888888888888888888888888888888763 2222 5655543
No 302
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=87.21 E-value=0.74 Score=23.82 Aligned_cols=24 Identities=8% Similarity=-0.216 Sum_probs=14.7
Q ss_pred cchHHHHHHHHHHhhhccchhhHH
Q 044786 114 VFPAWIIVCVLKACVCTMNMELGK 137 (340)
Q Consensus 114 ~~~~~~~~~ll~~~~~~~~~~~a~ 137 (340)
+-+...|+.+...+...|++++|.
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 345556666666666666666654
No 303
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=87.20 E-value=2.3 Score=23.57 Aligned_cols=23 Identities=22% Similarity=0.159 Sum_probs=11.2
Q ss_pred HHHHHHcCchHHHHHHHHHHHHc
Q 044786 293 LVGYIRNGLYVEATKFLYLMKAS 315 (340)
Q Consensus 293 i~~~~~~~~~~~a~~~~~~m~~~ 315 (340)
..+|...|+.+.|.+++++....
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHHHc
Confidence 34445555555555555554443
No 304
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=87.03 E-value=4.1 Score=27.06 Aligned_cols=56 Identities=20% Similarity=0.148 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhcC--CcHHHHHHHH
Q 044786 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK--KNIASWNAML 293 (340)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~li 293 (340)
..+-++.+....+.|++.+..+-+++|-+.+++..|.++|+.++.+ .+...|..++
T Consensus 26 ~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~l 83 (103)
T cd00923 26 LRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHH
Confidence 5555666667778888888888888888888899999998887753 2344555544
No 305
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=86.98 E-value=16 Score=30.04 Aligned_cols=95 Identities=15% Similarity=0.139 Sum_probs=57.0
Q ss_pred cchHHHHHHHHHHhhh-cc-chhhHHHHHHHHHH-cCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHcc-----cCChhh
Q 044786 114 VFPAWIIVCVLKACVC-TM-NMELGKQVHGLLFK-LGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK-----RHNTVV 185 (340)
Q Consensus 114 ~~~~~~~~~ll~~~~~-~~-~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~ 185 (340)
-.|..+...+++.... .+ ....-.++.+.+.. .+-.++..+..++++.+++.++|.+-.++++.-. ..|...
T Consensus 161 i~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rp 240 (292)
T PF13929_consen 161 IFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRP 240 (292)
T ss_pred eeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCch
Confidence 4455555555555544 11 22222333333332 2345666677778888888888888888777654 237777
Q ss_pred HHHHHHHHhccCchhHHHHHHHH
Q 044786 186 WTAKIVNNCREGHFHQVFNDFKE 208 (340)
Q Consensus 186 ~~~li~~~~~~~~~~~a~~~~~~ 208 (340)
|..+|+.-...|+..-...+..+
T Consensus 241 W~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 241 WAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHHHHHHcCCHHHHHHHhhC
Confidence 88888888888886655555443
No 306
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=86.81 E-value=2.6 Score=21.22 Aligned_cols=28 Identities=21% Similarity=0.337 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHc
Q 044786 288 SWNAMLVGYIRNGLYVEATKFLYLMKAS 315 (340)
Q Consensus 288 ~~~~li~~~~~~~~~~~a~~~~~~m~~~ 315 (340)
.|..+...|...|++++|++.|++....
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4666777888888888888888877643
No 307
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=86.79 E-value=13 Score=28.74 Aligned_cols=215 Identities=11% Similarity=0.032 Sum_probs=139.7
Q ss_pred ccchhhHHHHHHHHHhhcCCC-CCHHHHHHHHHHHHhcCChhHHHHHHhhcCc-----CCcccHHHHHHHHHcccChhHH
Q 044786 23 QKDSAGAFELLNHIRKRVNIK-PTLLFLNRLLLMHVSCGQLDTARQLFDEMPL-----RDFNSWAVMIVGYVDVADYQEC 96 (340)
Q Consensus 23 ~~~~~~a~~~~~~m~~~~g~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~a 96 (340)
.+....+...+...... ... .....+......+...+++..+...+..... .....+......+...+.+..+
T Consensus 36 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (291)
T COG0457 36 LGELAEALELLEEALEL-LPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEA 114 (291)
T ss_pred HhhHHHHHHHHHHHHhc-CccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHH
Confidence 45677777777777765 222 1367777888888888888888888877653 2333566666677777788888
Q ss_pred HHHHHHHHHhhcCCccccchHHHHHHHHH-HhhhccchhhHHHHHHHHHHcCC--CCchhHHHHHHHHHHhhcCHHHHHH
Q 044786 97 ITLFAEMMKRKKGHMLLVFPAWIIVCVLK-ACVCTMNMELGKQVHGLLFKLGS--SRNISLTGSLINFYGKFRCLEDADF 173 (340)
Q Consensus 97 ~~~~~~m~~~~~~~~~~~~~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~ 173 (340)
.+.+....... ..+......... .+...|+++.+...+........ ......+......+...++.+.+..
T Consensus 115 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 188 (291)
T COG0457 115 LELLEKALALD------PDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALE 188 (291)
T ss_pred HHHHHHHHcCC------CCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHH
Confidence 88888887652 111222233333 78888899999999988865332 1234445555555777888999988
Q ss_pred HHHHcccC----ChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCC-hhhHHHHHHhcccCCchhchHHHHHHHHHH
Q 044786 174 VFSQLKRH----NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKN-SYTFSSVLKACGGVDDDGNCGRQMHANIVK 247 (340)
Q Consensus 174 ~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~ 247 (340)
.+...... ....+..+-..+...+++++|...+...... .|+ ...+......+...+...+ +.........
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 264 (291)
T COG0457 189 LLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEE-ALEALEKALE 264 (291)
T ss_pred HHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHH-HHHHHHHHHH
Confidence 88887643 2455777788888888899999998888774 333 2333333334445555545 4444444443
No 308
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=86.46 E-value=52 Score=35.50 Aligned_cols=291 Identities=9% Similarity=-0.016 Sum_probs=153.2
Q ss_pred HHHHHhhhccchhhHHHHHHHHHhhcCC--CCCHHHHHHHHHHHHhcCChhHHHHHHhh-cCcCCcccHHHHHHHHHccc
Q 044786 15 CLIKECTFQKDSAGAFELLNHIRKRVNI--KPTLLFLNRLLLMHVSCGQLDTARQLFDE-MPLRDFNSWAVMIVGYVDVA 91 (340)
Q Consensus 15 ~li~~~~~~~~~~~a~~~~~~m~~~~g~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~li~~~~~~g 91 (340)
.+..+-.+.+.+.+|...++.-... .. .....-|-.+...|+.-+++|...-+... ...++ ..--|.-....|
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~-ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g 1463 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRST-EKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASG 1463 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccc-cchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhc
Confidence 3444556778889999888883211 11 11233444455588898999888887763 33332 233444566789
Q ss_pred ChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhH-HHHHHHHHHhhcCHHH
Q 044786 92 DYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISL-TGSLINFYGKFRCLED 170 (340)
Q Consensus 92 ~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~ 170 (340)
++..|...|+++.+.+ ++...+++.+++.....|.++.+.-..+-..... .+.... ++.=+.+--+.++++.
T Consensus 1464 ~~~da~~Cye~~~q~~------p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~ 1536 (2382)
T KOG0890|consen 1464 NWADAAACYERLIQKD------PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDL 1536 (2382)
T ss_pred cHHHHHHHHHHhhcCC------CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhh
Confidence 9999999999999884 3446678888888888888777766544333322 112222 2222333355666665
Q ss_pred HHHHHH-----------------HcccCChhhH-HHH----------HHHHhccCchhHHHHHHHHHh-----------h
Q 044786 171 ADFVFS-----------------QLKRHNTVVW-TAK----------IVNNCREGHFHQVFNDFKEMG-----------R 211 (340)
Q Consensus 171 a~~~~~-----------------~~~~~~~~~~-~~l----------i~~~~~~~~~~~a~~~~~~m~-----------~ 211 (340)
.+.... .+.++|.... +.+ +.++...|-+..+.++.-++. .
T Consensus 1537 ~e~~l~~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l 1616 (2382)
T KOG0890|consen 1537 LESYLSDRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSIEEL 1616 (2382)
T ss_pred hhhhhhcccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555433 1112222211 111 112222222222322222211 0
Q ss_pred cccCCChhhH-H-----HHHHhcccCCchhchHHHHHHHHHHhCCCc-----cHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 044786 212 ERIKKNSYTF-S-----SVLKACGGVDDDGNCGRQMHANIVKIGLES-----DEYVQCGLVDMYGKCRLLRDAERVFELI 280 (340)
Q Consensus 212 ~~~~p~~~t~-~-----~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~A~~~~~~~ 280 (340)
.++.++..+. + .-+.--....+..+....+.+.+......| -..+|-...+..-+.|+++.|...+-..
T Consensus 1617 ~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A 1696 (2382)
T KOG0890|consen 1617 KKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNA 1696 (2382)
T ss_pred hccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhh
Confidence 1122221111 0 111111111111122223333333332232 3456777777777789999998766555
Q ss_pred hcCCcHHHHHHHHHHHHHcCchHHHHHHHHHHHHcC
Q 044786 281 VDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASG 316 (340)
Q Consensus 281 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 316 (340)
.+..-+..+--...-+-..|+...|+.++++-.+..
T Consensus 1697 ~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1697 KESRLPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred hhcccchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 443333344445556778999999999999987653
No 309
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=86.23 E-value=1 Score=22.61 Aligned_cols=24 Identities=33% Similarity=0.685 Sum_probs=17.8
Q ss_pred HHHHHHcccChhHHHHHHHHHHHh
Q 044786 83 MIVGYVDVADYQECITLFAEMMKR 106 (340)
Q Consensus 83 li~~~~~~g~~~~a~~~~~~m~~~ 106 (340)
+..++.+.|++++|.+.|+++.+.
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHH
Confidence 455666777888888888887776
No 310
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=85.91 E-value=11 Score=30.79 Aligned_cols=89 Identities=11% Similarity=0.150 Sum_probs=63.8
Q ss_pred HHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHH
Q 044786 82 VMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINF 161 (340)
Q Consensus 82 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 161 (340)
.=|.+++..++|.+++...-+--+... +....+...-|-.|.+.+.+..+.++-....+..-.-+..-|.++.+.
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pE-----klPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaEL 162 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPE-----KLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAEL 162 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcc-----cCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHH
Confidence 347888889999988877666554321 334455566667788888988888888877776555555568877776
Q ss_pred HHh-----hcCHHHHHHHH
Q 044786 162 YGK-----FRCLEDADFVF 175 (340)
Q Consensus 162 ~~~-----~~~~~~a~~~~ 175 (340)
|.. .|.+++|+++.
T Consensus 163 yLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 163 YLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHhccccHHHHHHHH
Confidence 665 48899998876
No 311
>PRK11906 transcriptional regulator; Provisional
Probab=85.44 E-value=25 Score=31.00 Aligned_cols=161 Identities=12% Similarity=0.039 Sum_probs=100.8
Q ss_pred chh--HHHHHHhhh-----ccchhhHHHHHHHHHhhcCCCCCH-HHHHHHHHHHHh---------cCChhHHHHHHhhcC
Q 044786 11 DMY--TCLIKECTF-----QKDSAGAFELLNHIRKRVNIKPTL-LFLNRLLLMHVS---------CGQLDTARQLFDEMP 73 (340)
Q Consensus 11 ~~~--~~li~~~~~-----~~~~~~a~~~~~~m~~~~g~~~~~-~~~~~li~~~~~---------~~~~~~a~~~~~~~~ 73 (340)
..| ...+.+... .-+.+.|+.+|.+......+.|+- ..|..+-.++.. .....+|.++-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 456 555555543 235677888999998442455553 333333322221 234456666666555
Q ss_pred c---CCcccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCC-
Q 044786 74 L---RDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSS- 149 (340)
Q Consensus 74 ~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~- 149 (340)
+ .|......+..+....++++.|..+|++....+ +-...+|....-.+.-.|+.++|.+.+++..+..+.
T Consensus 332 eld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~------Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~ 405 (458)
T PRK11906 332 DITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS------TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRR 405 (458)
T ss_pred hcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC------CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchh
Confidence 3 355566666666678888999999999999884 344556666666677789999999999987665432
Q ss_pred CchhHHHHHHHHHHhhcCHHHHHHHHHHc
Q 044786 150 RNISLTGSLINFYGKFRCLEDADFVFSQL 178 (340)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 178 (340)
.-.......++.|+.. .++.|.++|-+-
T Consensus 406 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 433 (458)
T PRK11906 406 RKAVVIKECVDMYVPN-PLKNNIKLYYKE 433 (458)
T ss_pred hHHHHHHHHHHHHcCC-chhhhHHHHhhc
Confidence 2233334445566654 467777766543
No 312
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=85.38 E-value=9.2 Score=31.33 Aligned_cols=69 Identities=10% Similarity=0.027 Sum_probs=50.4
Q ss_pred HHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHH-----HcCCCCchhH
Q 044786 80 WAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLF-----KLGSSRNISL 154 (340)
Q Consensus 80 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~ 154 (340)
++...+.|..+|.+.+|.++-+.....+ +.+...+-.++..++..|+--.+.+-++.+. ..|+..+...
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld------pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsi 355 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD------PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSI 355 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC------hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhH
Confidence 4445577888899999999888888775 6777888888899999888777776665553 3455555443
No 313
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=85.35 E-value=6.4 Score=30.32 Aligned_cols=46 Identities=22% Similarity=0.177 Sum_probs=23.0
Q ss_pred HhhhccchhhHHHHHHHHHHc---CCCCchhHHHHHHHHHHhhcCHHHH
Q 044786 126 ACVCTMNMELGKQVHGLLFKL---GSSRNISLTGSLINFYGKFRCLEDA 171 (340)
Q Consensus 126 ~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a 171 (340)
.|....+.+++.+++.+..+. +-.+|+..+.+|.+.|.+.|+++.|
T Consensus 149 tyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 149 TYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 333344555555555544432 2234555555555555555555554
No 314
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=85.26 E-value=1.6 Score=20.86 Aligned_cols=20 Identities=25% Similarity=0.248 Sum_probs=10.1
Q ss_pred HHHHHHHHcCchHHHHHHHH
Q 044786 291 AMLVGYIRNGLYVEATKFLY 310 (340)
Q Consensus 291 ~li~~~~~~~~~~~a~~~~~ 310 (340)
.+...+...|++++|..+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 34445555555555555443
No 315
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=84.75 E-value=4.5 Score=24.44 Aligned_cols=46 Identities=15% Similarity=0.355 Sum_probs=27.8
Q ss_pred CHHHHHHHHHHhhc-CCcHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Q 044786 269 LLRDAERVFELIVD-KKNIASWNAMLVGYIRNGLYVEATKFLYLMKA 314 (340)
Q Consensus 269 ~~~~A~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 314 (340)
.++.+.++++.++. +-|-.-.-.+|.+|...|++++|.++++++..
T Consensus 5 ~~~~~~~~~~~lR~~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 5 QLEELEELIDSLRAQRHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34455555555543 23444445677788888888888887777654
No 316
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=84.32 E-value=16 Score=27.89 Aligned_cols=159 Identities=11% Similarity=0.098 Sum_probs=88.4
Q ss_pred CCCCCCCcchhHHHHHHhhhc----cchhhHHHHHHHHHhhcCCCCCH----HHHHHHHHHHHhcCChhHHHHHHhhcC-
Q 044786 3 NLCLPITTDMYTCLIKECTFQ----KDSAGAFELLNHIRKRVNIKPTL----LFLNRLLLMHVSCGQLDTARQLFDEMP- 73 (340)
Q Consensus 3 ~~g~~~~~~~~~~li~~~~~~----~~~~~a~~~~~~m~~~~g~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~- 73 (340)
+.|+-++++.++.++..+.+. +..+.+..+-.+.... ++.++- .....-+..|-..||+.+.=.+|-...
T Consensus 1 eAGm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~-~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv~~ 79 (233)
T PF14669_consen 1 EAGMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQAR-QFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINVKM 79 (233)
T ss_pred CCcccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhHHh
Confidence 468899999999998887654 4555555555555555 555443 233333445666677666555554433
Q ss_pred ------------------------cCCcccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhh
Q 044786 74 ------------------------LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVC 129 (340)
Q Consensus 74 ------------------------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~ 129 (340)
++..++|.....+-++.-..+++.+.+ -..+-.+++-.|.+
T Consensus 80 gce~~~dlq~~~~~va~~Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~---------------LGRiGiS~m~~Yhk 144 (233)
T PF14669_consen 80 GCEKFADLQRFCACVAEALTKDSKDKPGVPFCEFAETVCKDPQNDEVDKTL---------------LGRIGISLMYSYHK 144 (233)
T ss_pred hcCCHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHhcCCccchhhhhh---------------hhHHHHHHHHHHHH
Confidence 222233444444444433333322221 12223356677777
Q ss_pred ccchhhHHHHHHHHHHcCCC--------------CchhHHHHHHHHHHhhcCHHHHHHHHHH
Q 044786 130 TMNMELGKQVHGLLFKLGSS--------------RNISLTGSLINFYGKFRCLEDADFVFSQ 177 (340)
Q Consensus 130 ~~~~~~a~~~~~~~~~~~~~--------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 177 (340)
..++.++.++++.+.+..+. +--...|...+.+.++|.++.|..++++
T Consensus 145 ~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 145 TLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 88888888888877665332 1222345555556666666666666553
No 317
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=84.13 E-value=10 Score=25.44 Aligned_cols=87 Identities=10% Similarity=0.042 Sum_probs=62.9
Q ss_pred cchhhHHHHHHHHHhhcCCCCCHHHHHHHH--HHHHhcCChhHHHHHHhhcCcCCcccHHHHHHHHHcccChhHHHHHHH
Q 044786 24 KDSAGAFELLNHIRKRVNIKPTLLFLNRLL--LMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFA 101 (340)
Q Consensus 24 ~~~~~a~~~~~~m~~~~g~~~~~~~~~~li--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 101 (340)
...++|..+-+++... + +..-...|| ..+...|++++|..+.+.+..||..+|-+|-. .+.|..+.+..-+.
T Consensus 19 HcHqEA~tIAdwL~~~-~---~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~ 92 (115)
T TIGR02508 19 HCHQEANTIADWLHLK-G---ESEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLN 92 (115)
T ss_pred hHHHHHHHHHHHHhcC-C---chHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHH
Confidence 4678888888888766 3 223333444 56678899999999999999999999887754 46677777777777
Q ss_pred HHHHhhcCCccccchHHHHHH
Q 044786 102 EMMKRKKGHMLLVFPAWIIVC 122 (340)
Q Consensus 102 ~m~~~~~~~~~~~~~~~~~~~ 122 (340)
+|-..| .|....|..
T Consensus 93 rla~sg------~p~lq~Faa 107 (115)
T TIGR02508 93 RLAASG------DPRLQTFVA 107 (115)
T ss_pred HHHhCC------CHHHHHHHH
Confidence 787775 455555543
No 318
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=83.76 E-value=26 Score=29.83 Aligned_cols=129 Identities=9% Similarity=-0.008 Sum_probs=83.8
Q ss_pred HHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHH----HHcCCCCchhHHH
Q 044786 81 AVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLL----FKLGSSRNISLTG 156 (340)
Q Consensus 81 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~ 156 (340)
-++-.++.-.+.++++++-|+...+.....+.....-.++..|...+.+..|++++.-+.... ...++..-..-|.
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr 205 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYR 205 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHH
Confidence 345667777788999999998877653222222334458889999999999999988665433 2334332112232
Q ss_pred -----HHHHHHHhhcCHHHHHHHHHHcccC-----Chh----hHHHHHHHHhccCchhHHHHHHHHH
Q 044786 157 -----SLINFYGKFRCLEDADFVFSQLKRH-----NTV----VWTAKIVNNCREGHFHQVFNDFKEM 209 (340)
Q Consensus 157 -----~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~----~~~~li~~~~~~~~~~~a~~~~~~m 209 (340)
-+.-++...|++..|.+.-++..+- |-. ..-.+...|-..|+.+.|+.-|++.
T Consensus 206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 206 AMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 2344667778888887777765432 322 3455677888889988888777664
No 319
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=83.46 E-value=4.2 Score=20.50 Aligned_cols=27 Identities=19% Similarity=0.165 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHH
Q 044786 288 SWNAMLVGYIRNGLYVEATKFLYLMKA 314 (340)
Q Consensus 288 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 314 (340)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455666677777777777777776543
No 320
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=83.08 E-value=53 Score=32.78 Aligned_cols=27 Identities=15% Similarity=0.396 Sum_probs=18.8
Q ss_pred cHH-HHHHHHHccc--ChhHHHHHHHHHHH
Q 044786 79 SWA-VMIVGYVDVA--DYQECITLFAEMMK 105 (340)
Q Consensus 79 ~~~-~li~~~~~~g--~~~~a~~~~~~m~~ 105 (340)
.|+ .+|.+|.+.+ ..+.|++...+...
T Consensus 791 ~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 791 KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 444 5778888887 66777777766664
No 321
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=82.17 E-value=4.9 Score=30.95 Aligned_cols=33 Identities=15% Similarity=0.097 Sum_probs=25.1
Q ss_pred cCCcccHHHHHHHHHcccChhHHHHHHHHHHHh
Q 044786 74 LRDFNSWAVMIVGYVDVADYQECITLFAEMMKR 106 (340)
Q Consensus 74 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 106 (340)
.|++.+|..++..+...|+.++|.++..++...
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 467777777777788888888887777777766
No 322
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=81.83 E-value=18 Score=26.46 Aligned_cols=66 Identities=15% Similarity=0.231 Sum_probs=47.3
Q ss_pred hhhccchhhHHHHHHHHHhhcCCCCCH---HHHHHHHHHHHhcCChhHHHHHHhhcCcCCcc-cHHHHHHHHHcc
Q 044786 20 CTFQKDSAGAFELLNHIRKRVNIKPTL---LFLNRLLLMHVSCGQLDTARQLFDEMPLRDFN-SWAVMIVGYVDV 90 (340)
Q Consensus 20 ~~~~~~~~~a~~~~~~m~~~~g~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~li~~~~~~ 90 (340)
-....+.+++..+++-|... .|+. .++.. -.+...|++++|+++|+++.+.... .|..-+.++|-.
T Consensus 20 aL~~~d~~D~e~lLdALrvL---rP~~~e~d~~dg--~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~ 89 (153)
T TIGR02561 20 ALRSADPYDAQAMLDALRVL---RPNLKELDMFDG--WLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLN 89 (153)
T ss_pred HHhcCCHHHHHHHHHHHHHh---CCCccccchhHH--HHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence 34578999999999999854 5554 34333 3467889999999999999966533 666666555544
No 323
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=81.70 E-value=12 Score=33.00 Aligned_cols=123 Identities=11% Similarity=0.069 Sum_probs=78.2
Q ss_pred HHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcC---cCCcccHHHHHHHHHcccCh
Q 044786 17 IKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMP---LRDFNSWAVMIVGYVDVADY 93 (340)
Q Consensus 17 i~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~ 93 (340)
|.--...|+...|-+-+....+...-.|+..... -..+...|+++.+.+.+.... .....+..++++...+.|++
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~--~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~ 373 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLR--SVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARW 373 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHH--HHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhH
Confidence 3344456777666554444443313344444333 334566789999988877655 34556788899999999999
Q ss_pred hHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcC
Q 044786 94 QECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLG 147 (340)
Q Consensus 94 ~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 147 (340)
++|..+-..|+.. .+ -+..+........-+.|-++++...++++....
T Consensus 374 ~~a~s~a~~~l~~--ei----e~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 374 REALSTAEMMLSN--EI----EDEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHHHHhcc--cc----CChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 9999999888876 22 333333444444455667777877777765543
No 324
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=81.40 E-value=4 Score=20.58 Aligned_cols=28 Identities=18% Similarity=0.386 Sum_probs=17.9
Q ss_pred cHHHHHHHHHcccChhHHHHHHHHHHHh
Q 044786 79 SWAVMIVGYVDVADYQECITLFAEMMKR 106 (340)
Q Consensus 79 ~~~~li~~~~~~g~~~~a~~~~~~m~~~ 106 (340)
+|..+...|...|++++|.+.|++..+.
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3455556666667777777777666655
No 325
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=81.36 E-value=10 Score=29.65 Aligned_cols=52 Identities=8% Similarity=-0.091 Sum_probs=24.1
Q ss_pred HHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHH
Q 044786 124 LKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFS 176 (340)
Q Consensus 124 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 176 (340)
++.+.+.+.+.+++...++-++..+. +..+-..++..||-.|+|++|..-++
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~ 59 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLN 59 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHH
Confidence 33344444555555554444444322 33334445555555555555544433
No 326
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=81.20 E-value=12 Score=24.30 Aligned_cols=67 Identities=10% Similarity=0.075 Sum_probs=48.0
Q ss_pred hHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCcCCcccHHHHHHHHHcccChhHHH
Q 044786 28 GAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECI 97 (340)
Q Consensus 28 ~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 97 (340)
.+.++++.+.+. |+- +..-...+-.+-...|+.+.|.+++..+. +.+..|..++.++-..|.-+-|.
T Consensus 20 ~~~~v~d~ll~~-~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 20 KTRDVCDKCLEQ-GLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred hHHHHHHHHHhc-CCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 356778888887 643 33344444433346688999999999999 88888999999988887766554
No 327
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=80.51 E-value=38 Score=29.45 Aligned_cols=244 Identities=10% Similarity=-0.008 Sum_probs=143.6
Q ss_pred CCHHHHHHHH-HHHHhcCChhHHHHHHhhcCcCCcc-cHHHHHHHHH--cccChhHHHHHHHHHHHhhcCCccccchHHH
Q 044786 44 PTLLFLNRLL-LMHVSCGQLDTARQLFDEMPLRDFN-SWAVMIVGYV--DVADYQECITLFAEMMKRKKGHMLLVFPAWI 119 (340)
Q Consensus 44 ~~~~~~~~li-~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~li~~~~--~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ 119 (340)
|...+|..+- .++.-.|+.++|.+.--.+.+-|.. .+...+++.+ -.++.+.+...|++-+.. .|+...
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l-------dpdh~~ 238 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRL-------DPDHQK 238 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhcc-------Chhhhh
Confidence 3334444333 3455668888888877666655444 4555555433 357788899999888876 344332
Q ss_pred ---HHHH----------HHHhhhccchhhHHHHHHHHHHcC---CCCchhHHHHHHHHHHhhcCHHHHHHHHHHcccCCh
Q 044786 120 ---IVCV----------LKACVCTMNMELGKQVHGLLFKLG---SSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNT 183 (340)
Q Consensus 120 ---~~~l----------l~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 183 (340)
-... .+-..+.|++..|.+.|.+.+... ..|+...|.....+..+.|+..+|..--+...+-|.
T Consensus 239 sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~ 318 (486)
T KOG0550|consen 239 SKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDS 318 (486)
T ss_pred HHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCH
Confidence 2222 223456788999999999888664 355666777778888899999999998888776654
Q ss_pred hh---HHHHHHHHhccCchhHHHHHHHHHhhcccCC-ChhhHHHHHHhcccCCchhchHHHHHHHHHHhCCCccHHHHHH
Q 044786 184 VV---WTAKIVNNCREGHFHQVFNDFKEMGRERIKK-NSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCG 259 (340)
Q Consensus 184 ~~---~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (340)
.- |-.-..++.-.+.|++|.+-|++..+..-.+ ...|+.....++-+..+.+ ...++.........|....|.-
T Consensus 319 syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkRkd--~ykilGi~~~as~~eikkayrk 396 (486)
T KOG0550|consen 319 SYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKRKD--WYKILGISRNASDDEIKKAYRK 396 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhhhh--HHHHhhhhhhcccchhhhHHHH
Confidence 32 2222234445678999998888876643222 2344544444554444421 3334444443334444444433
Q ss_pred HHHHHh---ccCCHHHHHHHHHHhhcCCcHHHHHHHHHHHHHcCchHHHHHH
Q 044786 260 LVDMYG---KCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKF 308 (340)
Q Consensus 260 li~~~~---~~~~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 308 (340)
+.-++. ..|.-.+|+..|.+. ..+|...+++.+..+.
T Consensus 397 ~AL~~Hpd~~agsq~eaE~kFkev------------geAy~il~d~~kr~r~ 436 (486)
T KOG0550|consen 397 LALVHHPDKNAGSQKEAEAKFKEV------------GEAYTILSDPMKRVRF 436 (486)
T ss_pred HHHHhCCCcCcchhHHHHHHHHHH------------HHHHHHhcCHHHHhhc
Confidence 222221 122334555555544 4566666777666554
No 328
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=79.72 E-value=4.3 Score=22.54 Aligned_cols=25 Identities=12% Similarity=-0.000 Sum_probs=16.2
Q ss_pred HHHHHhccCchhHHHHHHHHHhhcc
Q 044786 189 KIVNNCREGHFHQVFNDFKEMGRER 213 (340)
Q Consensus 189 li~~~~~~~~~~~a~~~~~~m~~~~ 213 (340)
+..+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 4556666777777777777666543
No 329
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=79.32 E-value=23 Score=26.25 Aligned_cols=16 Identities=13% Similarity=0.397 Sum_probs=6.9
Q ss_pred ccCchhHHHHHHHHHh
Q 044786 195 REGHFHQVFNDFKEMG 210 (340)
Q Consensus 195 ~~~~~~~a~~~~~~m~ 210 (340)
..|+|.+|..+|+++.
T Consensus 56 ~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 56 VRGDWDDALRLLRELE 71 (160)
T ss_pred HhCCHHHHHHHHHHHh
Confidence 3444444444444443
No 330
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=79.06 E-value=5 Score=32.98 Aligned_cols=43 Identities=16% Similarity=0.073 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHcCCccchhHHHHHHH
Q 044786 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRI 329 (340)
Q Consensus 287 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~ 329 (340)
.-|+.-|..-.+.||+++|+++++|.+..|+.--..||...++
T Consensus 258 ~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V~ 300 (303)
T PRK10564 258 SYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSVK 300 (303)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHhh
Confidence 3467889999999999999999999999999888888876554
No 331
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=78.80 E-value=34 Score=27.87 Aligned_cols=165 Identities=10% Similarity=0.070 Sum_probs=86.3
Q ss_pred CHHHHHHHHHHcccC-------ChhhHHHHHHHHhccCchhHHHHHHHHHhh---cccC--CChhhHHHHHHhcccCCch
Q 044786 167 CLEDADFVFSQLKRH-------NTVVWTAKIVNNCREGHFHQVFNDFKEMGR---ERIK--KNSYTFSSVLKACGGVDDD 234 (340)
Q Consensus 167 ~~~~a~~~~~~~~~~-------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~--p~~~t~~~ll~~~~~~~~~ 234 (340)
+.++|..-|.+..+- +.-....+|..+.+.+++++.++.+++|.. ..+. -+..+.++++.-.+.....
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m 121 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNM 121 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhh
Confidence 455555555554321 223445566777777777777777776642 1111 2334555555544433333
Q ss_pred hchHHHHHHH----HHHh-CCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhcC------------C--cHHHHHHHHHH
Q 044786 235 GNCGRQMHAN----IVKI-GLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK------------K--NIASWNAMLVG 295 (340)
Q Consensus 235 ~~~~~~~~~~----~~~~-~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~------------~--~~~~~~~li~~ 295 (340)
.....+++. +... +-...-.|-+-|-..|...+.+....++++++... + -...|..=|..
T Consensus 122 -~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 122 -DLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred -HHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 112222221 1111 11222334455666777777787888887777541 1 13456677777
Q ss_pred HHHcCchHHHHHHHHHHHHcCCccchhHHHHHHHHhh
Q 044786 296 YIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332 (340)
Q Consensus 296 ~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~a~~ 332 (340)
|..+++-.+-..+|++...-.-.......-.+|+-|+
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECG 237 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECG 237 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcC
Confidence 8777777777777776544432222333344555554
No 332
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=77.97 E-value=24 Score=25.69 Aligned_cols=76 Identities=9% Similarity=0.139 Sum_probs=33.0
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHccc---------CChhhHHHHHHHHhccCc-hhHHHHHHHHHhhcccCCChhhHHHH
Q 044786 155 TGSLINFYGKFRCLEDADFVFSQLKR---------HNTVVWTAKIVNNCREGH-FHQVFNDFKEMGRERIKKNSYTFSSV 224 (340)
Q Consensus 155 ~~~l~~~~~~~~~~~~a~~~~~~~~~---------~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~l 224 (340)
.++++.-....++......+++.+.. .+-..|++++.+..+..- --.+..+|.-|++.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 34555554555555555554444421 122334444444433332 22334444444444444444444444
Q ss_pred HHhccc
Q 044786 225 LKACGG 230 (340)
Q Consensus 225 l~~~~~ 230 (340)
|.++.+
T Consensus 122 i~~~l~ 127 (145)
T PF13762_consen 122 IKAALR 127 (145)
T ss_pred HHHHHc
Confidence 444433
No 333
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.71 E-value=30 Score=26.65 Aligned_cols=91 Identities=10% Similarity=-0.029 Sum_probs=59.7
Q ss_pred HHHHhhhccchhhHHHHHHHHHHcCCCCch--hHHHHHHHHHHhhcCHHHHHHHHHHcccCChhh--HHHHHHHHhccCc
Q 044786 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNI--SLTGSLINFYGKFRCLEDADFVFSQLKRHNTVV--WTAKIVNNCREGH 198 (340)
Q Consensus 123 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~li~~~~~~~~ 198 (340)
+.+.+...+++++|...++......-..+. ..--.|.......|.+++|...++....++-.. ...-...+...|+
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~ 174 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGD 174 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCc
Confidence 445566677777777776665543221111 112234556777788888888888887774433 4444567888899
Q ss_pred hhHHHHHHHHHhhcc
Q 044786 199 FHQVFNDFKEMGRER 213 (340)
Q Consensus 199 ~~~a~~~~~~m~~~~ 213 (340)
-++|..-|++..+.+
T Consensus 175 k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 175 KQEARAAYEKALESD 189 (207)
T ss_pred hHHHHHHHHHHHHcc
Confidence 999999998888765
No 334
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=77.62 E-value=30 Score=26.87 Aligned_cols=20 Identities=10% Similarity=0.313 Sum_probs=10.4
Q ss_pred HHhccCchhHHHHHHHHHhh
Q 044786 192 NNCREGHFHQVFNDFKEMGR 211 (340)
Q Consensus 192 ~~~~~~~~~~a~~~~~~m~~ 211 (340)
+|-+...+++|+.=|+++.+
T Consensus 177 ayek~ek~eealeDyKki~E 196 (271)
T KOG4234|consen 177 AYEKMEKYEEALEDYKKILE 196 (271)
T ss_pred HHHhhhhHHHHHHHHHHHHH
Confidence 44444555555555555554
No 335
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=77.56 E-value=16 Score=30.72 Aligned_cols=86 Identities=8% Similarity=-0.026 Sum_probs=56.7
Q ss_pred HHHhcCChhHHHHHHhhcC--cC-CcccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhcc
Q 044786 55 MHVSCGQLDTARQLFDEMP--LR-DFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTM 131 (340)
Q Consensus 55 ~~~~~~~~~~a~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 131 (340)
-|.+.|.+++|+.++..-. .| |.+.+..-..+|.+...+..|+.-.......+ ..-...|..-+.+-...|
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd------~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD------KLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh------HHHHHHHHHHHHHHHHHh
Confidence 4677889999999987765 34 77788888888888888887776666665553 233334444444444455
Q ss_pred chhhHHHHHHHHHHc
Q 044786 132 NMELGKQVHGLLFKL 146 (340)
Q Consensus 132 ~~~~a~~~~~~~~~~ 146 (340)
...+|.+=++..+..
T Consensus 180 ~~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 180 NNMEAKKDCETVLAL 194 (536)
T ss_pred hHHHHHHhHHHHHhh
Confidence 666666666555554
No 336
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=77.45 E-value=18 Score=27.86 Aligned_cols=32 Identities=13% Similarity=0.096 Sum_probs=19.8
Q ss_pred CCcHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Q 044786 283 KKNIASWNAMLVGYIRNGLYVEATKFLYLMKA 314 (340)
Q Consensus 283 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 314 (340)
.|++..|..++..+...|+.++|.++.+++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 46666666666666666666666666666543
No 337
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=76.02 E-value=26 Score=27.13 Aligned_cols=75 Identities=12% Similarity=0.053 Sum_probs=45.0
Q ss_pred cccCCchhchHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhc------CCcHHHHHHHHHHHHHcCc
Q 044786 228 CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD------KKNIASWNAMLVGYIRNGL 301 (340)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~~li~~~~~~~~ 301 (340)
..+.|+- . |...|-.+...+.--++.....|...|. ..+.++|..++-+..+ ++|+..+.+|...|.+.|+
T Consensus 117 Wsr~~d~-~-A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~ 193 (203)
T PF11207_consen 117 WSRFGDQ-E-ALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN 193 (203)
T ss_pred hhccCcH-H-HHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence 3455553 2 5555555555554455666555655555 3466677776665543 2467777777777777777
Q ss_pred hHHH
Q 044786 302 YVEA 305 (340)
Q Consensus 302 ~~~a 305 (340)
++.|
T Consensus 194 ~e~A 197 (203)
T PF11207_consen 194 YEQA 197 (203)
T ss_pred hhhh
Confidence 7765
No 338
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=75.90 E-value=19 Score=23.48 Aligned_cols=38 Identities=5% Similarity=-0.018 Sum_probs=23.2
Q ss_pred hhcCHHHHHHHHHHcccCChhhHHHHHHHHhccCchhHH
Q 044786 164 KFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQV 202 (340)
Q Consensus 164 ~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 202 (340)
..|+.+.|.++++.+. +....|..++.++...|.-+-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 4466666666666666 6666666666666665554433
No 339
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.85 E-value=77 Score=30.42 Aligned_cols=78 Identities=6% Similarity=0.132 Sum_probs=42.3
Q ss_pred HHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCcC---CcccHHHHHHHHHcccChh
Q 044786 18 KECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLR---DFNSWAVMIVGYVDVADYQ 94 (340)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~ 94 (340)
+.+.+.|++++|.+-|-+-... +.|+ . +|.-|....+..+--.+++.+.+. +...-..|+.+|.+.++.+
T Consensus 376 d~Ly~Kgdf~~A~~qYI~tI~~--le~s-~----Vi~kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~ 448 (933)
T KOG2114|consen 376 DYLYGKGDFDEATDQYIETIGF--LEPS-E----VIKKFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVE 448 (933)
T ss_pred HHHHhcCCHHHHHHHHHHHccc--CChH-H----HHHHhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchH
Confidence 3345788999988877555432 3333 2 233344444555555555555533 2333455666677666666
Q ss_pred HHHHHHHH
Q 044786 95 ECITLFAE 102 (340)
Q Consensus 95 ~a~~~~~~ 102 (340)
+-.+..+.
T Consensus 449 kL~efI~~ 456 (933)
T KOG2114|consen 449 KLTEFISK 456 (933)
T ss_pred HHHHHHhc
Confidence 55554443
No 340
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.65 E-value=38 Score=31.07 Aligned_cols=133 Identities=17% Similarity=0.048 Sum_probs=96.1
Q ss_pred hhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCcCCcccHHHHHHHHHccc
Q 044786 12 MYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVA 91 (340)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g 91 (340)
.-+.+.+.+.+.|-.++|+++-..-..+ .....+.|+++.|.++..+. .+..-|..|.++....|
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s~D~d~r-------------Felal~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~ 680 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELSTDPDQR-------------FELALKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAG 680 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcCCChhhh-------------hhhhhhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcc
Confidence 4456777777777777776543222211 33446779999998886544 45667999999999999
Q ss_pred ChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHH
Q 044786 92 DYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171 (340)
Q Consensus 92 ~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 171 (340)
++..|.+.|...... ..|+-.+...|+-+....+-....+.|.. |...-+|...|+++++
T Consensus 681 ~l~lA~EC~~~a~d~--------------~~LlLl~t~~g~~~~l~~la~~~~~~g~~------N~AF~~~~l~g~~~~C 740 (794)
T KOG0276|consen 681 ELPLASECFLRARDL--------------GSLLLLYTSSGNAEGLAVLASLAKKQGKN------NLAFLAYFLSGDYEEC 740 (794)
T ss_pred cchhHHHHHHhhcch--------------hhhhhhhhhcCChhHHHHHHHHHHhhccc------chHHHHHHHcCCHHHH
Confidence 999999999887655 34566666777877777777888888854 3344567788999999
Q ss_pred HHHHHHcc
Q 044786 172 DFVFSQLK 179 (340)
Q Consensus 172 ~~~~~~~~ 179 (340)
.+++.+-.
T Consensus 741 ~~lLi~t~ 748 (794)
T KOG0276|consen 741 LELLISTQ 748 (794)
T ss_pred HHHHHhcC
Confidence 99987764
No 341
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=74.93 E-value=64 Score=29.08 Aligned_cols=181 Identities=10% Similarity=0.071 Sum_probs=100.2
Q ss_pred ccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHH
Q 044786 78 NSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGS 157 (340)
Q Consensus 78 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 157 (340)
...-+++..+..+-.+.-++.+-.+|+.-+ -+...|..++..|... ..+....+++++++..+. |+..-..
T Consensus 67 ~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-------e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~Re 137 (711)
T COG1747 67 SCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-------ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRE 137 (711)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHHHHHhc-------chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHH
Confidence 345567777777777777777777777773 4666777777777777 556666777777777654 3333344
Q ss_pred HHHHHHhhcCHHHHHHHHHHcccCChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCChhhHHHHHHhcccCCchhch
Q 044786 158 LINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC 237 (340)
Q Consensus 158 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~ 237 (340)
|...|-+ ++.+++...|.++. ..+.-..+.....++|.++.+. .|+.. +..
T Consensus 138 La~~yEk-ik~sk~a~~f~Ka~-----------yrfI~~~q~~~i~evWeKL~~~--i~dD~---------------D~f 188 (711)
T COG1747 138 LADKYEK-IKKSKAAEFFGKAL-----------YRFIPRRQNAAIKEVWEKLPEL--IGDDK---------------DFF 188 (711)
T ss_pred HHHHHHH-hchhhHHHHHHHHH-----------HHhcchhhhhhHHHHHHHHHHh--ccccH---------------HHH
Confidence 4444444 55566655555432 2222222333334455554431 12211 111
Q ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhcC--CcHHHHHHHHHHH
Q 044786 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK--KNIASWNAMLVGY 296 (340)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~li~~~ 296 (340)
...+...-.+.|..--...+.-+-.-|....++++|.+++..+.+. .|+..-..++.-+
T Consensus 189 l~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~l 249 (711)
T COG1747 189 LRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENL 249 (711)
T ss_pred HHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHH
Confidence 1111222223344444455555666788888899999999877763 3444444444443
No 342
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=73.76 E-value=50 Score=27.25 Aligned_cols=19 Identities=16% Similarity=0.382 Sum_probs=10.3
Q ss_pred HHHHHHHHcCchHHHHHHH
Q 044786 291 AMLVGYIRNGLYVEATKFL 309 (340)
Q Consensus 291 ~li~~~~~~~~~~~a~~~~ 309 (340)
.+|..+.+.|.+.+|+.+.
T Consensus 130 Kli~l~y~~~~YsdalalI 148 (421)
T COG5159 130 KLIYLLYKTGKYSDALALI 148 (421)
T ss_pred HHHHHHHhcccHHHHHHHH
Confidence 3455555666666655543
No 343
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.16 E-value=92 Score=30.09 Aligned_cols=171 Identities=11% Similarity=0.104 Sum_probs=80.8
Q ss_pred HHHhhhccchhhHHHHHHHHHHcCCCCch--hHHHHHHHHHHhhcCHHHHHHHHHHcccCChhhHHHHHHHHhccCchhH
Q 044786 124 LKACVCTMNMELGKQVHGLLFKLGSSRNI--SLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQ 201 (340)
Q Consensus 124 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 201 (340)
=+.|...|+++.|.++-+. .|+. .++..-.+.|.+.+++..|-++|-++.+ .|..+.--+....+.+
T Consensus 365 Wk~yLd~g~y~kAL~~ar~------~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~----~FEEVaLKFl~~~~~~- 433 (911)
T KOG2034|consen 365 WKTYLDKGEFDKALEIART------RPDALETVLLKQADFLFQDKEYLRAAEIYAETLS----SFEEVALKFLEINQER- 433 (911)
T ss_pred HHHHHhcchHHHHHHhccC------CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh----hHHHHHHHHHhcCCHH-
Confidence 3445566667766665332 1222 2333445567777788888888877733 3444444444445444
Q ss_pred HHHHHHHHhhcccCCChhhHHH-----HHHhc-ccCCchh---chHH--------HHHHHHHHh-CCCccHHHHHHHHHH
Q 044786 202 VFNDFKEMGRERIKKNSYTFSS-----VLKAC-GGVDDDG---NCGR--------QMHANIVKI-GLESDEYVQCGLVDM 263 (340)
Q Consensus 202 a~~~~~~m~~~~~~p~~~t~~~-----ll~~~-~~~~~~~---~~~~--------~~~~~~~~~-~~~~~~~~~~~li~~ 263 (340)
++..|-.=+-..++|...+=.. ++..| .+.++++ +.+. .+.+.+... ...-+...+.+....
T Consensus 434 ~L~~~L~KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nretv~~l 513 (911)
T KOG2034|consen 434 ALRTFLDKKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRETVYQL 513 (911)
T ss_pred HHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHHHH
Confidence 3333322222233443322221 22222 1222221 1111 111111111 111122233344445
Q ss_pred HhccCCHHHHHHHHHHhhcCCcHHHHHHHHHHHHHcCchHHHHHHHHH
Q 044786 264 YGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYL 311 (340)
Q Consensus 264 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 311 (340)
+...|+.+.+..+-.-+. -|..++.-++.++++++|++++..
T Consensus 514 ~~~~~~~e~ll~fA~l~~------d~~~vv~~~~q~e~yeeaLevL~~ 555 (911)
T KOG2034|consen 514 LASHGRQEELLQFANLIK------DYEFVVSYWIQQENYEEALEVLLN 555 (911)
T ss_pred HHHccCHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555666666666655554 466677777778888888777654
No 344
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=72.41 E-value=69 Score=29.70 Aligned_cols=129 Identities=11% Similarity=-0.025 Sum_probs=28.1
Q ss_pred ChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCChhhHHHHHHhcccCCchhchHHHHHHHHHHhCCCccHHHHHHHH
Q 044786 182 NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLV 261 (340)
Q Consensus 182 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 261 (340)
+...-.-++..|.+.|..+.|.++.+.+-.+-. ...-|...+.-+.+.++... ...+...+.
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~-v~~i~~~ll--------------- 465 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSL-VTRIADRLL--------------- 465 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH--------------------------------
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHH-HHHHHHHHH---------------
Confidence 334445667777788888888888777755422 22345666666666666533 333333332
Q ss_pred HHHhccCCHHHHHHHHHHhhc----CCcHHHHHHHHHH--HHHcCchHHHHHHHHHHHHcCCccchhHHHHHHH
Q 044786 262 DMYGKCRLLRDAERVFELIVD----KKNIASWNAMLVG--YIRNGLYVEATKFLYLMKASGIQIQESLINDLRI 329 (340)
Q Consensus 262 ~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~li~~--~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~ 329 (340)
+.|+..|... ..++.+.+.. .+...-|..+-.- ..+.|++.+|.+.+-.+....+.|...-..-|.+
T Consensus 466 ~~~~~~~~~~-~~~ll~~i~~~~~~~~~L~fla~yreF~~~~~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d 538 (566)
T PF07575_consen 466 EEYCNNGEPL-DDDLLDNIGSPMLLSQRLSFLAKYREFYELYDEGDFREAASLLVSLLKSPIAPKSFWPLLLCD 538 (566)
T ss_dssp --------------------------------------------------------------------------
T ss_pred HHHhcCCCcc-cHHHHHHhcchhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHCCCCCcHHHHHHHHHH
Confidence 2222222211 1111111111 1111111111111 1245788888888777777777776655544443
No 345
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=72.36 E-value=39 Score=27.69 Aligned_cols=86 Identities=7% Similarity=0.043 Sum_probs=53.9
Q ss_pred hHHHHHHhhhccchhhHHHHHHHHHhh-cCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcC----cCCcccHHHHHHHH
Q 044786 13 YTCLIKECTFQKDSAGAFELLNHIRKR-VNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMP----LRDFNSWAVMIVGY 87 (340)
Q Consensus 13 ~~~li~~~~~~~~~~~a~~~~~~m~~~-~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~ 87 (340)
+..=|++++..+++.+++...-+--.. ..++ +.+...-|-.|.+.+.+..+.++-.... +++..-|..++..|
T Consensus 86 cvvGIQALAEmnrWreVLsWvlqyYq~pEklP--pkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELy 163 (309)
T PF07163_consen 86 CVVGIQALAEMNRWREVLSWVLQYYQVPEKLP--PKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELY 163 (309)
T ss_pred hhhhHHHHHHHhhHHHHHHHHHHHhcCcccCC--HHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHH
Confidence 345577888888888776544333222 1233 3444555666888888888777766554 33455577665544
Q ss_pred -----HcccChhHHHHHH
Q 044786 88 -----VDVADYQECITLF 100 (340)
Q Consensus 88 -----~~~g~~~~a~~~~ 100 (340)
.-.|.+++|+++.
T Consensus 164 Ll~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 164 LLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHhccccHHHHHHHH
Confidence 4468888888876
No 346
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=72.31 E-value=19 Score=21.74 Aligned_cols=24 Identities=17% Similarity=-0.018 Sum_probs=11.6
Q ss_pred HHHHHHHhhhccchhhHHHHHHHH
Q 044786 120 IVCVLKACVCTMNMELGKQVHGLL 143 (340)
Q Consensus 120 ~~~ll~~~~~~~~~~~a~~~~~~~ 143 (340)
--.++.++...|++++|.++.+.+
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHH
Confidence 334455555555555555554444
No 347
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=72.24 E-value=32 Score=27.11 Aligned_cols=56 Identities=18% Similarity=0.037 Sum_probs=26.4
Q ss_pred HHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHH
Q 044786 82 VMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLL 143 (340)
Q Consensus 82 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 143 (340)
..++.+.+.+...+++...++-.+.+ +.+...-..++..++-.|++++|..-++..
T Consensus 6 ~t~seLL~~~sL~dai~~a~~qVkak------Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~ 61 (273)
T COG4455 6 DTISELLDDNSLQDAIGLARDQVKAK------PTDAGGRHFLFQLLCVAGDWEKALAQLNLA 61 (273)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcC------CccccchhHHHHHHhhcchHHHHHHHHHHH
Confidence 33444455555555555554444442 233334444445555555555555444433
No 348
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=71.36 E-value=43 Score=25.56 Aligned_cols=147 Identities=11% Similarity=0.028 Sum_probs=78.5
Q ss_pred CChhHHHHHHhhcCcCC-----cccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchh
Q 044786 60 GQLDTARQLFDEMPLRD-----FNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNME 134 (340)
Q Consensus 60 ~~~~~a~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 134 (340)
+....+...+....... ...+......+...+.+..+...+....... . .......+..........+.+.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~ 112 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELE-L---LPNLAEALLNLGLLLEALGKYE 112 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhh-h---ccchHHHHHHHHHHHHHHhhHH
Confidence 44444555444444221 3455666667777777777777777766420 0 1445556666666666667777
Q ss_pred hHHHHHHHHHHcCCCCchhHHHHHHH-HHHhhcCHHHHHHHHHHcccCC------hhhHHHHHHHHhccCchhHHHHHHH
Q 044786 135 LGKQVHGLLFKLGSSRNISLTGSLIN-FYGKFRCLEDADFVFSQLKRHN------TVVWTAKIVNNCREGHFHQVFNDFK 207 (340)
Q Consensus 135 ~a~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~------~~~~~~li~~~~~~~~~~~a~~~~~ 207 (340)
.+...+.........+. ........ .+...|+++.|...+......+ ...+......+...++.+.+...+.
T Consensus 113 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 191 (291)
T COG0457 113 EALELLEKALALDPDPD-LAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLE 191 (291)
T ss_pred HHHHHHHHHHcCCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHH
Confidence 77777776666544431 11112222 5666666666666666653211 1112222222444556666666666
Q ss_pred HHhh
Q 044786 208 EMGR 211 (340)
Q Consensus 208 ~m~~ 211 (340)
+...
T Consensus 192 ~~~~ 195 (291)
T COG0457 192 KALK 195 (291)
T ss_pred HHHh
Confidence 6554
No 349
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=71.35 E-value=4.8 Score=28.61 Aligned_cols=34 Identities=15% Similarity=0.061 Sum_probs=26.0
Q ss_pred HHcCchHHHHHHHHHHHHcCCccchhHHHHHHHHhh
Q 044786 297 IRNGLYVEATKFLYLMKASGIQIQESLINDLRIACS 332 (340)
Q Consensus 297 ~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~a~~ 332 (340)
-..|.-..|-.+|++|.+.|-.||. |+.|+.++.
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a~ 139 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEAK 139 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHhc
Confidence 3446677788999999999988875 677777654
No 350
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=71.24 E-value=16 Score=20.62 Aligned_cols=37 Identities=8% Similarity=0.068 Sum_probs=30.3
Q ss_pred HHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 044786 18 KECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLM 55 (340)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~ 55 (340)
-..-+.|-..++..+++.|.+. |+..+...+..++..
T Consensus 10 ~~Ak~~GlI~~~~~~l~~l~~~-g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 10 LLAKRRGLISEVKPLLDRLQQA-GFRISPKLIEEILRR 46 (48)
T ss_pred HHHHHcCChhhHHHHHHHHHHc-CcccCHHHHHHHHHH
Confidence 3345778888999999999888 999999988887753
No 351
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=71.17 E-value=5.6 Score=28.29 Aligned_cols=32 Identities=16% Similarity=0.277 Sum_probs=24.6
Q ss_pred ccCchhHHHHHHHHHhhcccCCChhhHHHHHHhc
Q 044786 195 REGHFHQVFNDFKEMGRERIKKNSYTFSSVLKAC 228 (340)
Q Consensus 195 ~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~ 228 (340)
..|.-.+|..+|++|.+.|-+||. |+.|+..+
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 346667899999999999999974 56666543
No 352
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=70.80 E-value=9.5 Score=24.31 Aligned_cols=17 Identities=12% Similarity=0.225 Sum_probs=7.0
Q ss_pred HHHHHHHhccCchhHHH
Q 044786 187 TAKIVNNCREGHFHQVF 203 (340)
Q Consensus 187 ~~li~~~~~~~~~~~a~ 203 (340)
..++.+|+..|++++++
T Consensus 47 G~l~qA~~e~Gkyr~~L 63 (80)
T PF10579_consen 47 GYLIQAHMEWGKYREML 63 (80)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444433
No 353
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=70.78 E-value=12 Score=31.44 Aligned_cols=53 Identities=9% Similarity=0.076 Sum_probs=36.1
Q ss_pred HHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHH
Q 044786 86 GYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLF 144 (340)
Q Consensus 86 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 144 (340)
-|.+.|.+++|+.+|..-.... +.+.+++..-..+|.+...+..|+.=....+
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~~------P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai 158 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAVY------PHNPVYHINRALAYLKQKSFAQAEEDCEAAI 158 (536)
T ss_pred hhhhccchhHHHHHhhhhhccC------CCCccchhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 4778888888888888766552 3367777777777777777766655444333
No 354
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.53 E-value=44 Score=25.31 Aligned_cols=133 Identities=10% Similarity=0.080 Sum_probs=76.2
Q ss_pred cHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchh-HHHH
Q 044786 79 SWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNIS-LTGS 157 (340)
Q Consensus 79 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ 157 (340)
.|-.-+. +.+.+..++|+.-|..+.+.|.|- ......--+.....+.|+-..|...|+++-.....|-.. -..-
T Consensus 61 ~flaAL~-lA~~~k~d~Alaaf~~lektg~g~----YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~AR 135 (221)
T COG4649 61 AFLAALK-LAQENKTDDALAAFTDLEKTGYGS----YPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLAR 135 (221)
T ss_pred HHHHHHH-HHHcCCchHHHHHHHHHHhcCCCc----chHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHH
Confidence 3444443 345667788888888887775333 122222233344556777778888888777665555433 1111
Q ss_pred HHH--HHHhhcCHHHHHHHHHHcccC----ChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCC
Q 044786 158 LIN--FYGKFRCLEDADFVFSQLKRH----NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKK 216 (340)
Q Consensus 158 l~~--~~~~~~~~~~a~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 216 (340)
|=. .+...|.++....-.+-+..+ -...-.+|-.+-.+.|++.+|...|..+......|
T Consensus 136 lraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 136 LRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 211 234556666666665555422 12334556666677888888888888877644344
No 355
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=70.46 E-value=19 Score=22.98 Aligned_cols=47 Identities=4% Similarity=-0.012 Sum_probs=24.8
Q ss_pred cccChhHHHHHHHHHHHhhcCCccccchH-HHHHHHHHHhhhccchhhHHHH
Q 044786 89 DVADYQECITLFAEMMKRKKGHMLLVFPA-WIIVCVLKACVCTMNMELGKQV 139 (340)
Q Consensus 89 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~ 139 (340)
...+.++|+..+...++.... .++. .++..++.+++..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~----~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITD----REDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCC----hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666655211 1222 2555556666666665555544
No 356
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=70.18 E-value=9 Score=18.04 Aligned_cols=27 Identities=19% Similarity=0.207 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHH
Q 044786 288 SWNAMLVGYIRNGLYVEATKFLYLMKA 314 (340)
Q Consensus 288 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 314 (340)
.|..+...+...|++++|...+++...
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 456677777888888888888877654
No 357
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=69.10 E-value=42 Score=27.93 Aligned_cols=72 Identities=11% Similarity=0.137 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhcCCcHHHHHHHHHHHH----------HcCchHHHHH
Q 044786 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYI----------RNGLYVEATK 307 (340)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~li~~~~----------~~~~~~~a~~ 307 (340)
-..+++.+...++.|.-..+..+--.+.+.=.+.+...+|+.+...|.. |..|+..|| -.|++...++
T Consensus 262 D~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~r--fd~Ll~iCcsmlil~Re~il~~DF~~nmk 339 (370)
T KOG4567|consen 262 DEELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQR--FDFLLYICCSMLILVRERILEGDFTVNMK 339 (370)
T ss_pred hHHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhh--hHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 5578888999999999999998888899998999999999999865544 566666555 3466766666
Q ss_pred HHHH
Q 044786 308 FLYL 311 (340)
Q Consensus 308 ~~~~ 311 (340)
+++.
T Consensus 340 LLQ~ 343 (370)
T KOG4567|consen 340 LLQN 343 (370)
T ss_pred HHhc
Confidence 6553
No 358
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=68.97 E-value=71 Score=27.09 Aligned_cols=185 Identities=13% Similarity=0.031 Sum_probs=97.8
Q ss_pred HHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCcC--------CcccHHHHHHHH
Q 044786 16 LIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLR--------DFNSWAVMIVGY 87 (340)
Q Consensus 16 li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~li~~~ 87 (340)
...+..+.|+++...+........ .++...+.++... +.++.+++....+..... ....|......+
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~---~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l 78 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNED---SPEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSL 78 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCC---ChhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 456777888988855555555432 3355666666655 788888888888776521 222333333333
Q ss_pred HcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhh-----cc---chhhHHHHHHHHHH--cCCCCchhHHHH
Q 044786 88 VDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVC-----TM---NMELGKQVHGLLFK--LGSSRNISLTGS 157 (340)
Q Consensus 88 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~-----~~---~~~~a~~~~~~~~~--~~~~~~~~~~~~ 157 (340)
.+...+.+..++.+-.... ..+......++..... .. .++....+-..+.+ ........++..
T Consensus 79 ~~lq~L~Elee~~~~~~~~-------~~~~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~ 151 (352)
T PF02259_consen 79 VKLQQLVELEEIIELKSNL-------SQNPQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLK 151 (352)
T ss_pred HHHhHHHHHHHHHHHHHhh-------cccHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHH
Confidence 3332333332222222111 0001111111111110 01 12222222222222 112334557778
Q ss_pred HHHHHHhhcCHHHHHHHHHHcccC-------ChhhHHHHHHHHhccCchhHHHHHHHHHhhc
Q 044786 158 LINFYGKFRCLEDADFVFSQLKRH-------NTVVWTAKIVNNCREGHFHQVFNDFKEMGRE 212 (340)
Q Consensus 158 l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 212 (340)
+...+.+.|+++.|...+..+.+. .....-.-.+.....|+..+|+..+++....
T Consensus 152 ~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 152 FAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 888888889998888888887653 2334444566677788888888888888763
No 359
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=68.54 E-value=88 Score=27.98 Aligned_cols=122 Identities=9% Similarity=-0.089 Sum_probs=74.7
Q ss_pred HHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 044786 84 IVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYG 163 (340)
Q Consensus 84 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 163 (340)
|.--...|+...|-+-+...+....| .|+...... ......|+++.+.+.+...... +.....+..+++....
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~----~p~~i~l~~--~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~ 368 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQ----DPVLIQLRS--VIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLH 368 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCC----CchhhHHHH--HHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhh
Confidence 33344567776666555555544312 344443333 3345678888888877655433 2234557778889999
Q ss_pred hhcCHHHHHHHHHHcccCCh---hhHHHHHHHHhccCchhHHHHHHHHHhhc
Q 044786 164 KFRCLEDADFVFSQLKRHNT---VVWTAKIVNNCREGHFHQVFNDFKEMGRE 212 (340)
Q Consensus 164 ~~~~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 212 (340)
+.|++++|...-..|....+ .....-.-.--..|-++++...|+++..-
T Consensus 369 ~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 369 GLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred chhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 99999999988877764322 22222222233467789999999998764
No 360
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=68.45 E-value=35 Score=23.38 Aligned_cols=27 Identities=7% Similarity=0.113 Sum_probs=24.8
Q ss_pred hHHHHHHHHhccCchhHHHHHHHHHhh
Q 044786 185 VWTAKIVNNCREGHFHQVFNDFKEMGR 211 (340)
Q Consensus 185 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 211 (340)
-|..++.-|...|..++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 488999999999999999999999987
No 361
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=68.17 E-value=68 Score=26.54 Aligned_cols=98 Identities=11% Similarity=0.056 Sum_probs=48.1
Q ss_pred cHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHH-HHHHHhhhccchhhHHHHHHHHHHcCCCCchh----
Q 044786 79 SWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIV-CVLKACVCTMNMELGKQVHGLLFKLGSSRNIS---- 153 (340)
Q Consensus 79 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---- 153 (340)
.|..+...|++.++.+.+.++..+..+.. -..+.+.|..... -+.-.+....-+++-++..+.+.+.|...+..
T Consensus 117 a~~n~aeyY~qi~D~~ng~~~~~~~~~~a-~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK 195 (412)
T COG5187 117 ADRNIAEYYCQIMDIQNGFEWMRRLMRDA-MSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYK 195 (412)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHH-HhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHH
Confidence 45566667777777777777666655542 1111134433222 22223333444556666666666666544322
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHcc
Q 044786 154 LTGSLINFYGKFRCLEDADFVFSQLK 179 (340)
Q Consensus 154 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 179 (340)
+|..+- +....++.+|-.++.+..
T Consensus 196 ~Y~Gi~--~m~~RnFkeAa~Ll~d~l 219 (412)
T COG5187 196 VYKGIF--KMMRRNFKEAAILLSDIL 219 (412)
T ss_pred HHHHHH--HHHHHhhHHHHHHHHHHh
Confidence 232221 122345666666655543
No 362
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=68.01 E-value=61 Score=25.96 Aligned_cols=100 Identities=13% Similarity=0.055 Sum_probs=57.8
Q ss_pred hcccCCchhchHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhc---------------CCcHHHHHH
Q 044786 227 ACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD---------------KKNIASWNA 291 (340)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---------------~~~~~~~~~ 291 (340)
-|.+..+. .....+.+.....+++-+..-..+++ +...|++..|...++.-.. .|.+.....
T Consensus 168 Rysklsd~-qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ 244 (333)
T KOG0991|consen 168 RYSKLSDQ-QILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKK 244 (333)
T ss_pred hhcccCHH-HHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHH
Confidence 34444443 33445555555556655555555544 4456777776666554332 355665666
Q ss_pred HHHHHHHcCchHHHHHHHHHHHHcCCccchhHHHHHHHHh
Q 044786 292 MLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331 (340)
Q Consensus 292 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~a~ 331 (340)
++..|. .+++++|.+++.++-+.|+.|... .+.+++.|
T Consensus 245 ml~~~~-~~~~~~A~~il~~lw~lgysp~Di-i~~~FRv~ 282 (333)
T KOG0991|consen 245 MLQACL-KRNIDEALKILAELWKLGYSPEDI-ITTLFRVV 282 (333)
T ss_pred HHHHHH-hccHHHHHHHHHHHHHcCCCHHHH-HHHHHHHH
Confidence 666554 456888888888888888877654 33444444
No 363
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=67.90 E-value=16 Score=26.65 Aligned_cols=55 Identities=18% Similarity=0.148 Sum_probs=23.6
Q ss_pred CCCCCCcchhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcC
Q 044786 4 LCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCG 60 (340)
Q Consensus 4 ~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~ 60 (340)
.|+++++.- ..+++.+.+.++.-.|.++++.+... +-..+..|.-.-++.+...|
T Consensus 15 ~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~-~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 15 AGLRLTPQR-LAVLELLLEADGHLSAEELYEELREE-GPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred cCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHh-CCCCCHhHHHHHHHHHHHCC
Confidence 344444333 23444444444445555555555544 43333333333334444433
No 364
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=67.64 E-value=21 Score=25.21 Aligned_cols=69 Identities=12% Similarity=0.096 Sum_probs=49.2
Q ss_pred CCCCCCcchhHHHHHHhhhcc--chhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCc
Q 044786 4 LCLPITTDMYTCLIKECTFQK--DSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL 74 (340)
Q Consensus 4 ~g~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 74 (340)
+|.. +.+-|+.=-.-|.... |.=+..+-+..+... .+-|++.+...-+.++-+.+++..|.++|+-++.
T Consensus 42 hg~e-t~EEfd~ry~~yf~r~~iD~wEvrkglN~l~~y-DlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 42 HGPE-TAEEFDARYEKYFNRPEIDGWEVRKGLNNLFDY-DLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred cCcc-cHHHHHHHHHHHcCcccchHHHHHHHHHhhhcc-ccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4444 5555554444444322 333455666667666 8899999999999999999999999999998873
No 365
>PF13934 ELYS: Nuclear pore complex assembly
Probab=67.03 E-value=63 Score=25.72 Aligned_cols=124 Identities=10% Similarity=-0.020 Sum_probs=68.5
Q ss_pred hHHHHHHHHhc--cCchhHHHHHHHHHhhcccCCChhhHHHHHHhcccCCchhchHHHHHHHHHHhCCCc-cHHHHHHHH
Q 044786 185 VWTAKIVNNCR--EGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLES-DEYVQCGLV 261 (340)
Q Consensus 185 ~~~~li~~~~~--~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~li 261 (340)
.|...++++.. .+++++|.+.+-+- .+.|+.. ..++.++...|+.. .|..+++.. +.++ +......++
T Consensus 78 ~~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~~~--~~Il~~L~~~~~~~-lAL~y~~~~---~p~l~s~~~~~~~~ 148 (226)
T PF13934_consen 78 KYIKFIQGFWLLDHGDFEEALELLSHP---SLIPWFP--DKILQALLRRGDPK-LALRYLRAV---GPPLSSPEALTLYF 148 (226)
T ss_pred HHHHHHHHHHHhChHhHHHHHHHhCCC---CCCcccH--HHHHHHHHHCCChh-HHHHHHHhc---CCCCCCHHHHHHHH
Confidence 46677777775 46677777766222 2233321 24666666667653 355555542 2222 222333333
Q ss_pred HHHhccCCHHHHHHHHHHhhcCCcHHHHHHHHHHHHHcCchHHHHHHHHHHHHcCCccch
Q 044786 262 DMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQE 321 (340)
Q Consensus 262 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 321 (340)
.. ..++.+.+|+.+-+...++-....+..++..+.....- ...++++...=+.+.+
T Consensus 149 ~~-La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~~~~---~~~~~~Ll~LPl~~~E 204 (226)
T PF13934_consen 149 VA-LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEECAR---SGRLDELLSLPLDEEE 204 (226)
T ss_pred HH-HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHHhhh---hhHHHHHHhCCCChHH
Confidence 34 66789999998888776533345777788777754431 2235555544443333
No 366
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=66.08 E-value=13 Score=30.66 Aligned_cols=40 Identities=18% Similarity=0.253 Sum_probs=31.4
Q ss_pred HHHHHHHHhccCchhHHHHHHHHHhhcccCCChhhHHHHH
Q 044786 186 WTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVL 225 (340)
Q Consensus 186 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll 225 (340)
|+.-|+...+.|++++|+.++++.++.|+.--..||...+
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 6788899999999999999999999888766555554433
No 367
>PHA02875 ankyrin repeat protein; Provisional
Probab=65.93 E-value=93 Score=27.29 Aligned_cols=212 Identities=12% Similarity=0.061 Sum_probs=99.1
Q ss_pred HHHhhhccchhhHHHHHHHHHhhcCCCCCHHH--HHHHHHHHHhcCChhHHHHHHhhcCcCCc---ccHHHHHHHHHccc
Q 044786 17 IKECTFQKDSAGAFELLNHIRKRVNIKPTLLF--LNRLLLMHVSCGQLDTARQLFDEMPLRDF---NSWAVMIVGYVDVA 91 (340)
Q Consensus 17 i~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~g 91 (340)
+...++.|+.+.+..++ +. |..|+... -.+.+...++.|+.+-+.-+++.=..++. ...+ -+...+..|
T Consensus 6 L~~A~~~g~~~iv~~Ll----~~-g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t-~L~~A~~~g 79 (413)
T PHA02875 6 LCDAILFGELDIARRLL----DI-GINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIES-ELHDAVEEG 79 (413)
T ss_pred HHHHHHhCCHHHHHHHH----HC-CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCccc-HHHHHHHCC
Confidence 33444566665554444 44 66555432 23445555677887766666554333322 2222 344455677
Q ss_pred ChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhH--HHHHHHHHHhhcCHH
Q 044786 92 DYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISL--TGSLINFYGKFRCLE 169 (340)
Q Consensus 92 ~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~ 169 (340)
+.+.+..+++ .+..... ..+..- ...+...+..|+. ++.+.+.+.|..|+... -.+.+...+..|+.+
T Consensus 80 ~~~~v~~Ll~----~~~~~~~-~~~~~g-~tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~ 149 (413)
T PHA02875 80 DVKAVEELLD----LGKFADD-VFYKDG-MTPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIK 149 (413)
T ss_pred CHHHHHHHHH----cCCcccc-cccCCC-CCHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence 7766544443 3200000 001111 1223333444554 35555666676654322 123455566777777
Q ss_pred HHHHHHHHcccC---ChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCChhhH---HHHHHhcccCCchhchHHHHHH
Q 044786 170 DADFVFSQLKRH---NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTF---SSVLKACGGVDDDGNCGRQMHA 243 (340)
Q Consensus 170 ~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~---~~ll~~~~~~~~~~~~~~~~~~ 243 (340)
-+..+++.-... |..-++.+..+ +..|+. ++.+.+.+.|..|+...- ...+...+..|+. .+.+
T Consensus 150 ~v~~Ll~~g~~~~~~d~~g~TpL~~A-~~~g~~----eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~-----~iv~ 219 (413)
T PHA02875 150 GIELLIDHKACLDIEDCCGCTPLIIA-MAKGDI----AICKMLLDSGANIDYFGKNGCVAALCYAIENNKI-----DIVR 219 (413)
T ss_pred HHHHHHhcCCCCCCCCCCCCCHHHHH-HHcCCH----HHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCH-----HHHH
Confidence 766666543322 22223333333 334553 344556666766654321 1233322333433 3445
Q ss_pred HHHHhCCCccH
Q 044786 244 NIVKIGLESDE 254 (340)
Q Consensus 244 ~~~~~~~~~~~ 254 (340)
.+.+.|..++.
T Consensus 220 ~Ll~~gad~n~ 230 (413)
T PHA02875 220 LFIKRGADCNI 230 (413)
T ss_pred HHHHCCcCcch
Confidence 55566766654
No 368
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=65.89 E-value=46 Score=31.00 Aligned_cols=44 Identities=11% Similarity=0.185 Sum_probs=19.2
Q ss_pred HHHHHHhccCCHHHHHHHHHHhhcCC-----cHHHHHHHHHHHHHcCch
Q 044786 259 GLVDMYGKCRLLRDAERVFELIVDKK-----NIASWNAMLVGYIRNGLY 302 (340)
Q Consensus 259 ~li~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~li~~~~~~~~~ 302 (340)
+|+++|...|++-.+.++++.+...| -...||..|+.+.+.|.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 34444444444444444444444311 123344444444444443
No 369
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=65.56 E-value=79 Score=26.32 Aligned_cols=52 Identities=13% Similarity=0.168 Sum_probs=26.3
Q ss_pred HHHHHHhhcCHHHHHHHHHHcccCChhhHHHHHHHHhccCchhHHHHHHHHHhh
Q 044786 158 LINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGR 211 (340)
Q Consensus 158 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 211 (340)
++..+.+..++.+..+.++.+. .+..-...++.+...|++..|++++.+..+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~--~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK--TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3344444444444444444442 222233445555666777777766666554
No 370
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=65.18 E-value=81 Score=27.58 Aligned_cols=61 Identities=18% Similarity=0.127 Sum_probs=38.4
Q ss_pred HHHHHHHHhhhccchhhHHHHHHHHHHc--CCCCchhHHHHHHHHHHhhcCHHHHHHHHHHcc
Q 044786 119 IIVCVLKACVCTMNMELGKQVHGLLFKL--GSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179 (340)
Q Consensus 119 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 179 (340)
+.-.|++.+.-.|+.....+..+.+.+. |-.|...+-..+.-+|.-.|++.+|.+.|-.+.
T Consensus 237 sL~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~niL 299 (525)
T KOG3677|consen 237 SLLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNIL 299 (525)
T ss_pred HHHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777788877666666666543 223322222456667778888888888876643
No 371
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=65.15 E-value=63 Score=29.68 Aligned_cols=146 Identities=13% Similarity=0.010 Sum_probs=93.8
Q ss_pred CCCHHHHHHHHHHHHhc--CChhHHHHHHhhcCcCCcccHHHHH--HHHH-cccChhHHHHHHHHHHHhhcCCccccchH
Q 044786 43 KPTLLFLNRLLLMHVSC--GQLDTARQLFDEMPLRDFNSWAVMI--VGYV-DVADYQECITLFAEMMKRKKGHMLLVFPA 117 (340)
Q Consensus 43 ~~~~~~~~~li~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~li--~~~~-~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 117 (340)
.|+..+..+++.-.... ...+-+-.+|..|..++...|-+|- ..|. ..|+...|.+++....... + .-..
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~--p---~~~~ 642 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINKPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLA--P---LQQD 642 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcCCCCCeEEEeecccceeeecCCcHHHHHHHHHHhccC--h---hhhc
Confidence 35555555555433322 2345677788888888776655432 2343 3589999999988877652 1 1112
Q ss_pred HHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHcccC---ChhhHHHHHHHHh
Q 044786 118 WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH---NTVVWTAKIVNNC 194 (340)
Q Consensus 118 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~ 194 (340)
+....|.....+.|..-.|-.++.+..... ...+.++..+.++|....++++|.+.|++..+. +.+.-+.+...-|
T Consensus 643 v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 643 VPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred ccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 234445555666677777888877776665 446678888999999999999999999987654 3444555544333
No 372
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=63.81 E-value=21 Score=27.10 Aligned_cols=44 Identities=16% Similarity=0.100 Sum_probs=32.3
Q ss_pred HHHHHHhccCCHHHHHHHHHHhhcCCcHHHHHHHHHHHHHcCch
Q 044786 259 GLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLY 302 (340)
Q Consensus 259 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 302 (340)
..+-.|.+.|.+++|.+++++....|+......-+....+.++.
T Consensus 116 ~aV~VCm~~g~Fk~A~eiLkr~~~d~~~~~~r~kL~~II~~Kd~ 159 (200)
T cd00280 116 QAVAVCMENGEFKKAEEVLKRLFSDPESQKLRMKLLMIIREKDP 159 (200)
T ss_pred HHHHHHHhcCchHHHHHHHHHHhcCCCchhHHHHHHHHHHcccc
Confidence 34557888999999999999988777766666666666655543
No 373
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=62.66 E-value=60 Score=24.81 Aligned_cols=46 Identities=20% Similarity=0.192 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhhcCCcH-----H-----HHHHHHHHHHHcCchHHHHHHHHHHHHc
Q 044786 270 LRDAERVFELIVDKKNI-----A-----SWNAMLVGYIRNGLYVEATKFLYLMKAS 315 (340)
Q Consensus 270 ~~~A~~~~~~~~~~~~~-----~-----~~~~li~~~~~~~~~~~a~~~~~~m~~~ 315 (340)
++.|.-+|+.+.+.-+. . .--..+..|.+.|.+++|.+++++....
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d 140 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSD 140 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcC
Confidence 45666677666552111 1 1123455789999999999999998763
No 374
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=62.56 E-value=23 Score=24.46 Aligned_cols=45 Identities=9% Similarity=0.018 Sum_probs=31.0
Q ss_pred HHHHHHHcCchHHHHHHHHHHHHcCCccchhHHHHHHHHhhhcCc
Q 044786 292 MLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336 (340)
Q Consensus 292 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~a~~~~g~ 336 (340)
++..+...+..-.|.++++++.+.+..++..|.-..|+.+...|-
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 344555555666677777888777777777777777777777664
No 375
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=62.24 E-value=37 Score=23.22 Aligned_cols=21 Identities=14% Similarity=0.314 Sum_probs=10.6
Q ss_pred HHHHHhccCchhHHHHHHHHH
Q 044786 189 KIVNNCREGHFHQVFNDFKEM 209 (340)
Q Consensus 189 li~~~~~~~~~~~a~~~~~~m 209 (340)
++..|...|+.++|..-++++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 344455555555555555554
No 376
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=61.80 E-value=17 Score=27.30 Aligned_cols=57 Identities=14% Similarity=-0.017 Sum_probs=31.5
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCcC----CcccHHHHHHHHHcccChh
Q 044786 36 IRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLR----DFNSWAVMIVGYVDVADYQ 94 (340)
Q Consensus 36 m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~li~~~~~~g~~~ 94 (340)
+... |++++..-. .++..+...++.-.|.++++.+.+. +..|-.--+..+...|-..
T Consensus 17 L~~~-GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 17 CAQR-NVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHc-CCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 3444 776555443 4444445556666777777777643 3444444455566555443
No 377
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=61.53 E-value=19 Score=25.06 Aligned_cols=46 Identities=11% Similarity=-0.008 Sum_probs=34.5
Q ss_pred HHHHHHHHcCchHHHHHHHHHHHHcCCccchhHHHHHHHHhhhcCc
Q 044786 291 AMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336 (340)
Q Consensus 291 ~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~a~~~~g~ 336 (340)
.++..+...+..-.|.++++.|...|..++..|.-..|+.+.+.|-
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 57 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGL 57 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCe
Confidence 4566666667778888899999888888888888888888877773
No 378
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=61.28 E-value=96 Score=25.83 Aligned_cols=116 Identities=8% Similarity=-0.032 Sum_probs=59.9
Q ss_pred HHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHcccC--ChhhHHHHHHHHhccCchh
Q 044786 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH--NTVVWTAKIVNNCREGHFH 200 (340)
Q Consensus 123 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~li~~~~~~~~~~ 200 (340)
++....+.+++....+.+..+... ..-...++.+...|++..|.++..+..+- ...-|+.+=.. ..+++
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~~v------~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~l~~~~c~~~L---~~~L~ 174 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIKTV------QQTQSRLQELLEEGDYPGALDLIEECQQLLEELKGYSCVRHL---SSQLQ 174 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcccchHHHHH---hHHHH
Confidence 444455555555555555554322 23345667777889999998888775432 00001110000 11222
Q ss_pred HHHHHHHHHhhcc-----cCCChhhHHHHHHhcccCCchhchHHHHHHHHHH
Q 044786 201 QVFNDFKEMGRER-----IKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVK 247 (340)
Q Consensus 201 ~a~~~~~~m~~~~-----~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~ 247 (340)
+-....+++.+.. ...|+..|..++.||.-.|+...++.++......
T Consensus 175 e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~~~f~~ 226 (291)
T PF10475_consen 175 ETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKLQMHFTS 226 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 2333333322210 1456677888888887777766666666555443
No 379
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=61.23 E-value=25 Score=22.78 Aligned_cols=63 Identities=16% Similarity=0.193 Sum_probs=40.2
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCcCCcccHHHHHHHHHcccChhHH
Q 044786 29 AFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQEC 96 (340)
Q Consensus 29 a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 96 (340)
...+++.+.+. |+- +.. ..-..-+...+.+.|.++++.++.++..+|..+..++-..|...-|
T Consensus 18 ~~~v~~~L~~~-~Vl-t~~---~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 18 PKYLWDHLLSR-GVF-TPD---MIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHHhc-CCC-CHH---HHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 44566667666 543 222 2222334556678888888888888888888888888777655443
No 380
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=61.21 E-value=48 Score=22.41 Aligned_cols=84 Identities=17% Similarity=0.073 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhcCCcHHHHHHHHHHHHHcCchHHHHHHHHHHHHcCC
Q 044786 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGI 317 (340)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 317 (340)
+..+-+.+...+-. ...+-.+=+..+...|++++|..+.+.+. -||...|-+|- -.+.|--+++..-+.+|...|
T Consensus 24 A~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~-~pdlepw~ALc--e~rlGl~s~l~~rl~rla~sg- 98 (115)
T TIGR02508 24 ANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLC-YPDLEPWLALC--EWRLGLGSALESRLNRLAASG- 98 (115)
T ss_pred HHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCC-CchHHHHHHHH--HHhhccHHHHHHHHHHHHhCC-
Confidence 55566665554422 22232334456778899999999988874 78998887763 346777777777788887777
Q ss_pred ccchhHHHH
Q 044786 318 QIQESLIND 326 (340)
Q Consensus 318 ~~~~~t~~~ 326 (340)
.|...+|..
T Consensus 99 ~p~lq~Faa 107 (115)
T TIGR02508 99 DPRLQTFVA 107 (115)
T ss_pred CHHHHHHHH
Confidence 455555544
No 381
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=61.21 E-value=43 Score=21.81 Aligned_cols=63 Identities=13% Similarity=0.074 Sum_probs=46.7
Q ss_pred CCcchhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcC
Q 044786 8 ITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMP 73 (340)
Q Consensus 8 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 73 (340)
|+...|..-++.-.... .++ .++|+..... |+..|+.+|.+++....-+=-.+...+++..|.
T Consensus 8 ~~~~~~k~~~~rk~~Ls-~eE-~EL~ELa~~A-Gv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 8 PTAQVYKYSLRRKKVLS-AEE-VELYELAQLA-GVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred ChHHHHHHHHHHHhccC-HHH-HHHHHHHHHh-CCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 34556665554332222 222 2899999988 999999999999999888888888888888886
No 382
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=60.94 E-value=1.4e+02 Score=27.64 Aligned_cols=179 Identities=12% Similarity=0.008 Sum_probs=110.2
Q ss_pred hhhHHHHHHHHHhhcCCCCCHHHHHHHH--HH-HHhcCChhHHHHHHhhcCc-------C-CcccHHHHHHHHHccc---
Q 044786 26 SAGAFELLNHIRKRVNIKPTLLFLNRLL--LM-HVSCGQLDTARQLFDEMPL-------R-DFNSWAVMIVGYVDVA--- 91 (340)
Q Consensus 26 ~~~a~~~~~~m~~~~g~~~~~~~~~~li--~~-~~~~~~~~~a~~~~~~~~~-------~-~~~~~~~li~~~~~~g--- 91 (340)
...|.++++..... |.- .....-.++ .+ ++..++++.|..+|+...+ . .....+-+...|.+..
T Consensus 228 ~~~a~~~~~~~a~~-g~~-~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~ 305 (552)
T KOG1550|consen 228 LSEAFKYYREAAKL-GHS-EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVE 305 (552)
T ss_pred hhHHHHHHHHHHhh-cch-HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCc
Confidence 56788888888877 532 112222222 22 4466899999999988754 2 4456677777777653
Q ss_pred --ChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhh-ccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHH--hhc
Q 044786 92 --DYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVC-TMNMELGKQVHGLLFKLGSSRNISLTGSLINFYG--KFR 166 (340)
Q Consensus 92 --~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~ 166 (340)
+.+.|..++.+.-..+ .|+...+-..+.-... ..+...|.++|...-+.|..+ ...+..++.... -..
T Consensus 306 ~~d~~~A~~~~~~aA~~g------~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~-A~~~la~~y~~G~gv~r 378 (552)
T KOG1550|consen 306 KIDYEKALKLYTKAAELG------NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHIL-AIYRLALCYELGLGVER 378 (552)
T ss_pred cccHHHHHHHHHHHHhcC------CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChH-HHHHHHHHHHhCCCcCC
Confidence 5667999999888885 5777665555544444 356789999999998888542 222222222111 334
Q ss_pred CHHHHHHHHHHcccCCh-hhHHHH--HHHHhccCchhHHHHHHHHHhhccc
Q 044786 167 CLEDADFVFSQLKRHNT-VVWTAK--IVNNCREGHFHQVFNDFKEMGRERI 214 (340)
Q Consensus 167 ~~~~a~~~~~~~~~~~~-~~~~~l--i~~~~~~~~~~~a~~~~~~m~~~~~ 214 (340)
+...|...+++.-+.+. .+.-.+ +..+.. ++++.+...+..+.+.|.
T Consensus 379 ~~~~A~~~~k~aA~~g~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 379 NLELAFAYYKKAAEKGNPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred CHHHHHHHHHHHHHccChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 67788888888766652 222222 222233 677777777777766553
No 383
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=60.33 E-value=24 Score=25.72 Aligned_cols=43 Identities=9% Similarity=-0.004 Sum_probs=21.2
Q ss_pred HHHHHHcCchHHHHHHHHHHHHcCCccchhHHHHHHHHhhhcC
Q 044786 293 LVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335 (340)
Q Consensus 293 i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~a~~~~g 335 (340)
+..+.+.++.-.|.++++++.+.|...+..|.-..|+.+...|
T Consensus 27 l~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 27 LELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3344444444455555555555555555555555555554444
No 384
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=60.30 E-value=1.2e+02 Score=26.57 Aligned_cols=55 Identities=16% Similarity=0.169 Sum_probs=24.3
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHccc------CChhhHHHHHHHHhccCchhHHHHHHHHH
Q 044786 155 TGSLINFYGKFRCLEDADFVFSQLKR------HNTVVWTAKIVNNCREGHFHQVFNDFKEM 209 (340)
Q Consensus 155 ~~~l~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m 209 (340)
+.-+.+.|..+|+++.|.+.|.+... +-+..|-.+|..-...|+|.....+..+.
T Consensus 153 ~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A 213 (466)
T KOG0686|consen 153 LEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKA 213 (466)
T ss_pred HHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHH
Confidence 33444455555555555555554321 12223444444444445544444444443
No 385
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=59.94 E-value=60 Score=28.42 Aligned_cols=21 Identities=10% Similarity=0.311 Sum_probs=10.5
Q ss_pred HHHHHHcccChhHHHHHHHHH
Q 044786 83 MIVGYVDVADYQECITLFAEM 103 (340)
Q Consensus 83 li~~~~~~g~~~~a~~~~~~m 103 (340)
|++.++-.||+..|+++++.+
T Consensus 128 LlRvh~LLGDY~~Alk~l~~i 148 (404)
T PF10255_consen 128 LLRVHCLLGDYYQALKVLENI 148 (404)
T ss_pred HHHHHHhccCHHHHHHHhhcc
Confidence 344445555555555554443
No 386
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=59.57 E-value=1.4e+02 Score=27.27 Aligned_cols=34 Identities=6% Similarity=-0.045 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHcCCccch
Q 044786 287 ASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQE 321 (340)
Q Consensus 287 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 321 (340)
...-.++.++. .|+.+.++.++++|.+.|..|..
T Consensus 247 ~~i~~ll~al~-~~d~~~~l~~~~~l~~~g~~~~~ 280 (509)
T PRK14958 247 LLLFDILEALA-AKAGDRLLGCVTRLVEQGVDFSN 280 (509)
T ss_pred HHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCHHH
Confidence 33344455544 47888899999999999887753
No 387
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=59.32 E-value=1.1e+02 Score=25.97 Aligned_cols=64 Identities=14% Similarity=0.086 Sum_probs=40.5
Q ss_pred HHHHHHhccCCHHHHHHHHHHhhc------CCcHHHHH--HHHHHHHHcCchHHHHHHHHHHHH-----cCCccchh
Q 044786 259 GLVDMYGKCRLLRDAERVFELIVD------KKNIASWN--AMLVGYIRNGLYVEATKFLYLMKA-----SGIQIQES 322 (340)
Q Consensus 259 ~li~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~-----~g~~~~~~ 322 (340)
.++...-+.++.++|.++++++.. .|+.+.|- ...+.+...|+..++.+.+++.+. .|+.|+.+
T Consensus 80 i~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh 156 (380)
T KOG2908|consen 80 ILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVH 156 (380)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhh
Confidence 344444455677788887777765 25555443 344556677888888887777766 46666443
No 388
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=59.20 E-value=1.2e+02 Score=26.45 Aligned_cols=28 Identities=11% Similarity=0.114 Sum_probs=18.2
Q ss_pred cHHHHHHHHHHHhccCCHHHHHHHHHHhhc
Q 044786 253 DEYVQCGLVDMYGKCRLLRDAERVFELIVD 282 (340)
Q Consensus 253 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 282 (340)
.+..+..|...|. +++....+++++++.
T Consensus 305 ~Pqlr~il~~fy~--sky~~cl~~L~~~k~ 332 (466)
T KOG0686|consen 305 EPQLREILFKFYS--SKYASCLELLREIKP 332 (466)
T ss_pred ChHHHHHHHHHhh--hhHHHHHHHHHHhcc
Confidence 4555555555554 577888888888765
No 389
>PRK09462 fur ferric uptake regulator; Provisional
Probab=58.43 E-value=33 Score=25.09 Aligned_cols=58 Identities=14% Similarity=0.075 Sum_probs=31.3
Q ss_pred CCCCCCCcchhHHHHHHhhhc-cchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCh
Q 044786 3 NLCLPITTDMYTCLIKECTFQ-KDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQL 62 (340)
Q Consensus 3 ~~g~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~ 62 (340)
++|+++++.- ..++..+... +..-.|.++++.+.+. +...+..|.-..+..+...|-+
T Consensus 10 ~~glr~T~qR-~~Il~~l~~~~~~h~sa~eI~~~l~~~-~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 10 KAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDM-GEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhh-CCCCCHHHHHHHHHHHHHCCCE
Confidence 3455555444 2334444433 3466667777776666 5555555555555666665544
No 390
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=58.42 E-value=1.6e+02 Score=27.64 Aligned_cols=49 Identities=22% Similarity=0.133 Sum_probs=33.0
Q ss_pred CcchhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhc
Q 044786 9 TTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSC 59 (340)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~ 59 (340)
+......+|-.|.|.|++++|.++....... +......+...+..|...
T Consensus 110 ~~~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~--~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 110 NGDPIWALIYYCLRCGDYDEALEVANENRNQ--FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp TTEEHHHHHHHHHTTT-HHHHHHHHHHTGGG--S-TTTTHHHHHHHHCTTT
T ss_pred CCCccHHHHHHHHhcCCHHHHHHHHHHhhhh--hcchhHHHHHHHHHHHhC
Confidence 3344557788888999999999988555544 555556667777777664
No 391
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=58.37 E-value=25 Score=32.51 Aligned_cols=23 Identities=17% Similarity=0.335 Sum_probs=0.0
Q ss_pred CchhHHHHHHHHHhhcccCCChh
Q 044786 197 GHFHQVFNDFKEMGRERIKKNSY 219 (340)
Q Consensus 197 ~~~~~a~~~~~~m~~~~~~p~~~ 219 (340)
|++.+|.+.+-.+......|...
T Consensus 509 ~~~~~Aa~~Lv~Ll~~~~~Pk~f 531 (566)
T PF07575_consen 509 GDFREAASLLVSLLKSPIAPKSF 531 (566)
T ss_dssp -----------------------
T ss_pred hhHHHHHHHHHHHHCCCCCcHHH
Confidence 44445544444444444444433
No 392
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=57.33 E-value=84 Score=23.96 Aligned_cols=110 Identities=9% Similarity=0.017 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhH---HHHHHhhcC---------cCCcc-cHHHHHHHHHcccC
Q 044786 26 SAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDT---ARQLFDEMP---------LRDFN-SWAVMIVGYVDVAD 92 (340)
Q Consensus 26 ~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~---a~~~~~~~~---------~~~~~-~~~~li~~~~~~g~ 92 (340)
++.|.+.++.-... -+.|....+.--.++....++.. +.+++++.. .|+-. ++..+..+|...+.
T Consensus 7 FE~ark~aea~y~~--nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 7 FEHARKKAEAAYAK--NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Q ss_pred -----------hhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCC
Q 044786 93 -----------YQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSR 150 (340)
Q Consensus 93 -----------~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 150 (340)
+++|...|++.... .|+..+|+.-+..+ ++|-+++.++.+.+...
T Consensus 85 l~~d~~~A~~~F~kA~~~FqkAv~~-------~P~ne~Y~ksLe~~------~kap~lh~e~~~~~~~~ 140 (186)
T PF06552_consen 85 LTPDTAEAEEYFEKATEYFQKAVDE-------DPNNELYRKSLEMA------AKAPELHMEIHKQGLGQ 140 (186)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHH--------TT-HHHHHHHHHH------HTHHHHHHHHHHSSS--
T ss_pred hcCChHHHHHHHHHHHHHHHHHHhc-------CCCcHHHHHHHHHH------HhhHHHHHHHHHHHhhh
No 393
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=57.24 E-value=51 Score=21.40 Aligned_cols=62 Identities=11% Similarity=0.048 Sum_probs=38.0
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHcccCChhhHHHHHHHHhccCchhHH
Q 044786 137 KQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQV 202 (340)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 202 (340)
..++..+.+.|+-- . ...-..-....+.+++.++++.++.++..+|..+..++-..|...-|
T Consensus 19 ~~v~~~L~~~~Vlt-~---~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 19 KYLWDHLLSRGVFT-P---DMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHhcCCCC-H---HHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 34556666666431 1 11222223445677788888888888888888888887776654433
No 394
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.15 E-value=90 Score=24.20 Aligned_cols=52 Identities=2% Similarity=-0.143 Sum_probs=22.4
Q ss_pred HhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHcc
Q 044786 126 ACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179 (340)
Q Consensus 126 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 179 (340)
...+.|.++.|+.+++.....+..+ .....-.+.+...|+-++|..-|+...
T Consensus 135 vq~q~~k~D~AL~~L~t~~~~~w~~--~~~elrGDill~kg~k~~Ar~ay~kAl 186 (207)
T COG2976 135 VQLQQKKADAALKTLDTIKEESWAA--IVAELRGDILLAKGDKQEARAAYEKAL 186 (207)
T ss_pred HHHHhhhHHHHHHHHhccccccHHH--HHHHHhhhHHHHcCchHHHHHHHHHHH
Confidence 3344455555555554443333221 112222344555555555555554433
No 395
>PF13934 ELYS: Nuclear pore complex assembly
Probab=56.03 E-value=1e+02 Score=24.53 Aligned_cols=106 Identities=8% Similarity=-0.009 Sum_probs=60.8
Q ss_pred CCCCCHHHHHHHHHHHHh--cCChhHHHHHHhhcCcCCcc-c-HHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccch
Q 044786 41 NIKPTLLFLNRLLLMHVS--CGQLDTARQLFDEMPLRDFN-S-WAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP 116 (340)
Q Consensus 41 g~~~~~~~~~~li~~~~~--~~~~~~a~~~~~~~~~~~~~-~-~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 116 (340)
++++. |..++.++.. .+++++|.+.+- .|+.. . -..++.++...|+.+.|+++++.+... ..+
T Consensus 74 ~ip~~---~~~~~~g~W~LD~~~~~~A~~~L~---~ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~-------l~s 140 (226)
T PF13934_consen 74 GIPPK---YIKFIQGFWLLDHGDFEEALELLS---HPSLIPWFPDKILQALLRRGDPKLALRYLRAVGPP-------LSS 140 (226)
T ss_pred CCCHH---HHHHHHHHHHhChHhHHHHHHHhC---CCCCCcccHHHHHHHHHHCCChhHHHHHHHhcCCC-------CCC
Confidence 66543 4455666553 467777777763 33332 2 235778888888888888888876322 222
Q ss_pred HHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 044786 117 AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYG 163 (340)
Q Consensus 117 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 163 (340)
......++.. ...+.+.+|..+-+...+..- ...+..++..+.
T Consensus 141 ~~~~~~~~~~-La~~~v~EAf~~~R~~~~~~~---~~l~e~l~~~~~ 183 (226)
T PF13934_consen 141 PEALTLYFVA-LANGLVTEAFSFQRSYPDELR---RRLFEQLLEHCL 183 (226)
T ss_pred HHHHHHHHHH-HHcCCHHHHHHHHHhCchhhh---HHHHHHHHHHHH
Confidence 2333333333 555788888887776655532 334445555544
No 396
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=55.94 E-value=1.7e+02 Score=27.93 Aligned_cols=32 Identities=16% Similarity=0.064 Sum_probs=22.1
Q ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHcCCccch
Q 044786 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQE 321 (340)
Q Consensus 289 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 321 (340)
...|+.++.. ++...++.++++|...|+.+..
T Consensus 249 If~LldAL~~-~d~~~al~~l~~L~~~G~d~~~ 280 (709)
T PRK08691 249 LYELLTGIIN-QDGAALLAKAQEMAACAVGFDN 280 (709)
T ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHHhCCCHHH
Confidence 3444555444 7788888888888888876553
No 397
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=55.93 E-value=1.2e+02 Score=26.62 Aligned_cols=60 Identities=18% Similarity=0.367 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHhhcCc--C---------CcccHHHHHHHHHcccChhHHHHHHHHHHHh
Q 044786 47 LFLNRLLLMHVSCGQLDTARQLFDEMPL--R---------DFNSWAVMIVGYVDVADYQECITLFAEMMKR 106 (340)
Q Consensus 47 ~~~~~li~~~~~~~~~~~a~~~~~~~~~--~---------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 106 (340)
.+.-.|++.++-.|++..|+++++.+.- + .+.+|-.+.=+|.-.+++.+|.++|...+.-
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~y 193 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLY 193 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667788899999999999999998861 1 3345666777788889999999999887643
No 398
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=55.87 E-value=36 Score=20.82 Aligned_cols=53 Identities=8% Similarity=-0.058 Sum_probs=39.7
Q ss_pred CCCCcchhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcC
Q 044786 6 LPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCG 60 (340)
Q Consensus 6 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~ 60 (340)
+.|+...++.++..+++..-.+.++..+....+. |. .+..+|-.-++.++|..
T Consensus 4 v~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~-g~-I~~d~~lK~vR~LaReQ 56 (65)
T PF09454_consen 4 VVAEDPLSNQLYELVAEDHAIEDTIYYLDRALQR-GS-IDLDTFLKQVRSLAREQ 56 (65)
T ss_dssp EE-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TS-S-HHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CC-CCHHHHHHHHHHHHHHH
Confidence 3466777888999999888899999999999888 64 46777777777766643
No 399
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=55.63 E-value=31 Score=24.79 Aligned_cols=59 Identities=19% Similarity=0.244 Sum_probs=39.6
Q ss_pred HHHHHHHHHhhcCCcHHHHHHHHHHHHHcCchHHHHHHHHHHHHcCCccchhHHHHHHHHh
Q 044786 271 RDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331 (340)
Q Consensus 271 ~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~a~ 331 (340)
..|.++-..+- -+-.-|...++. +.+.|-..+...++++|++.|+..+..+|+.+++-.
T Consensus 96 r~aR~~A~~lg-L~V~GtlGvL~~-ak~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~~~ 154 (157)
T COG2405 96 RDARNVAKSLG-LKVTGTLGVLAL-AKSKGLISKDKPILDELIEKGFRISRSILEEILRKL 154 (157)
T ss_pred HHHHHHHHHcC-CeeeehhHHHHH-HHHcCcccchHHHHHHHHHhcCcccHHHHHHHHHHh
Confidence 34444444442 122223333433 345677888889999999999999999999988753
No 400
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=55.57 E-value=1.2e+02 Score=25.20 Aligned_cols=96 Identities=17% Similarity=0.183 Sum_probs=43.1
Q ss_pred hhhHHHHHHhcccCCchhchHHHHH---HHHHHhCCCccHHHHHHHH-HHHhccCCHHHHHHHHHHhhcCC------c-H
Q 044786 218 SYTFSSVLKACGGVDDDGNCGRQMH---ANIVKIGLESDEYVQCGLV-DMYGKCRLLRDAERVFELIVDKK------N-I 286 (340)
Q Consensus 218 ~~t~~~ll~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~li-~~~~~~~~~~~A~~~~~~~~~~~------~-~ 286 (340)
...+..+..-|++.++.+...+.+- +.....|.+.|+...-+=+ -.|....-+++-.+..+.|.+++ | -
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRy 194 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRY 194 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhH
Confidence 3445566666777777655322222 2223335555544322111 12222223445555555555432 1 1
Q ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHc
Q 044786 287 ASWNAMLVGYIRNGLYVEATKFLYLMKAS 315 (340)
Q Consensus 287 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 315 (340)
.+|..+. +....++.+|..++-+....
T Consensus 195 K~Y~Gi~--~m~~RnFkeAa~Ll~d~l~t 221 (412)
T COG5187 195 KVYKGIF--KMMRRNFKEAAILLSDILPT 221 (412)
T ss_pred HHHHHHH--HHHHHhhHHHHHHHHHHhcc
Confidence 2333321 22345566776666665443
No 401
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=54.46 E-value=41 Score=19.53 Aligned_cols=24 Identities=8% Similarity=0.360 Sum_probs=18.3
Q ss_pred HHHHHHcccChhHHHHHHHHHHHh
Q 044786 83 MIVGYVDVADYQECITLFAEMMKR 106 (340)
Q Consensus 83 li~~~~~~g~~~~a~~~~~~m~~~ 106 (340)
+.-++.+.|++++|.+..+.+++.
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhh
Confidence 455677888888888888888887
No 402
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=54.33 E-value=34 Score=21.53 Aligned_cols=38 Identities=24% Similarity=0.092 Sum_probs=25.0
Q ss_pred HcCchHHHHHHHHHHHHcCCccchhHHHHHHHHhhhcC
Q 044786 298 RNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335 (340)
Q Consensus 298 ~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~a~~~~g 335 (340)
-.++.+.+.+++++..+.|+.|.......+..+....|
T Consensus 13 ~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG 50 (79)
T PF02607_consen 13 LAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIG 50 (79)
T ss_dssp HTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777776666666666655554
No 403
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=54.07 E-value=68 Score=21.89 Aligned_cols=21 Identities=19% Similarity=0.510 Sum_probs=10.0
Q ss_pred HHHHHHcccChhHHHHHHHHH
Q 044786 83 MIVGYVDVADYQECITLFAEM 103 (340)
Q Consensus 83 li~~~~~~g~~~~a~~~~~~m 103 (340)
++..|...|+.++|...+.++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 344444455555555555443
No 404
>PF08314 Sec39: Secretory pathway protein Sec39; InterPro: IPR013244 Sec39 was originally identified as a protein involved in ER-Golgi transport in a large scale promoter shut down analysis of essential yeast genes []. A subsequent study found that Sec39p (Dsl3p) is required for Golgi-ER retrograde transport and is part of a very stable protein complex that also includes Dsl1p (in mammals ZW10), Tip20p (Rint-1) and the ER localized Q-SNARE proteins Ufe1p (syntaxin-18), Sec20p and Use1p []. This was confirmed in a genome-wide analysis of protein complexes []. ; PDB: 3K8P_D.
Probab=53.77 E-value=62 Score=31.03 Aligned_cols=162 Identities=11% Similarity=-0.035 Sum_probs=73.6
Q ss_pred cchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHH-----------hhcCHHHHHHHHHHcccC-
Q 044786 114 VFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYG-----------KFRCLEDADFVFSQLKRH- 181 (340)
Q Consensus 114 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------~~~~~~~a~~~~~~~~~~- 181 (340)
-+.......++++....|+++.|.+++..-....+. .......++.+.. ..|.+..|.++++-+...
T Consensus 429 l~~~~~~~~~l~~LL~~~~f~la~~~~~~~~~~~l~-~~~~~~lvl~~~~e~fd~Asn~n~~~g~lk~A~~~L~l~~~~~ 507 (715)
T PF08314_consen 429 LSKDEIEEIFLEALLSSGRFSLAKSLYEESSSSPLS-SEKVEDLVLKAAWEFFDNASNGNRTRGGLKKARECLNLFPPTF 507 (715)
T ss_dssp S-HHHHHHHHHHHHHHTT-HHHHHHHHHHTT---TT--HHHHHHHHHHHHHHHHH-SS--TTSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCHHHHHHHHhcCCcCCCC-HHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhccCcC
Confidence 455667777888888888888888877754332222 2333333333221 235567777777766543
Q ss_pred ----ChhhHHHHHHHHhccCchhHHHHHHHHHhhcc---------cCCChhh-HHHHHHhcccCCchhchHHHHHHHHHH
Q 044786 182 ----NTVVWTAKIVNNCREGHFHQVFNDFKEMGRER---------IKKNSYT-FSSVLKACGGVDDDGNCGRQMHANIVK 247 (340)
Q Consensus 182 ----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---------~~p~~~t-~~~ll~~~~~~~~~~~~~~~~~~~~~~ 247 (340)
...-...+|++.....++.-. .++| +.+|... ...++..-.+.-.--+....+...+..
T Consensus 508 ~~~~~~~~~~~Li~a~~~Ls~f~l~-------l~~g~p~~P~~ir~~~dpl~LI~~vLe~np~aY~~~~~ll~l~~~L~~ 580 (715)
T PF08314_consen 508 PNSPRIQREKDLIKATHALSEFSLV-------LQPGVPFLPVQIRLHSDPLSLISKVLEQNPKAYKQLEKLLDLANNLVL 580 (715)
T ss_dssp HHTHHHHHHHHHHHHHHHHTTS------------------HHHHHTTT-THHHHHHHHHHSTTGGG-HHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHhCCee-------cCCCCCCCCceeeccCChHHHHHHHHHhCchhhcCHHHHHHHHHHHHH
Confidence 222344555555544443321 1122 1222221 122222111111100112222222222
Q ss_pred h---------CCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhcC
Q 044786 248 I---------GLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283 (340)
Q Consensus 248 ~---------~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 283 (340)
. ...-...+....|++-...+|++-|.+...++...
T Consensus 581 ~~~~~~~~~~~~~~~~ri~~~~i~~AL~~~Df~~Ay~~~~~ll~~ 625 (715)
T PF08314_consen 581 AGSDESSESDDEAAERRILSMCIEAALVEDDFETAYSYCLELLDP 625 (715)
T ss_dssp H-----TT---SSTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HhcccccccchHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2 11123344555677777889999999988877653
No 405
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=53.23 E-value=1.4e+02 Score=25.28 Aligned_cols=114 Identities=9% Similarity=0.017 Sum_probs=59.1
Q ss_pred hHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHh---hcCHHH
Q 044786 94 QECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK---FRCLED 170 (340)
Q Consensus 94 ~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~ 170 (340)
+.-+.++++.++.. +-+.......++.+.+..+.+...+-++.+...... +...|...++.... .-.++.
T Consensus 48 E~klsilerAL~~n------p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~ 120 (321)
T PF08424_consen 48 ERKLSILERALKHN------PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSD 120 (321)
T ss_pred HHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHH
Confidence 34455555555552 344445555666666666666666666666655322 34444444443332 123444
Q ss_pred HHHHHHHcc-------cCC--------------hhhHHHHHHHHhccCchhHHHHHHHHHhhccc
Q 044786 171 ADFVFSQLK-------RHN--------------TVVWTAKIVNNCREGHFHQVFNDFKEMGRERI 214 (340)
Q Consensus 171 a~~~~~~~~-------~~~--------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 214 (340)
...+|.+.. ... +..+..+.......|..+.|+.+++-+.+-++
T Consensus 121 ~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 121 VRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 444443322 100 11233334445568888899988888887654
No 406
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=53.04 E-value=1.6e+02 Score=25.98 Aligned_cols=39 Identities=18% Similarity=0.035 Sum_probs=18.8
Q ss_pred HHHHHHHHhhcCCcHHHHHHHHHHHHHcCchHHHHHHHHHH
Q 044786 272 DAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLM 312 (340)
Q Consensus 272 ~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 312 (340)
++.+.+..+...+. +-...+.++.+.|+.+.+--+.+.|
T Consensus 240 ~a~~~L~~ll~d~~--vr~~a~~AlG~lg~p~av~~L~~~l 278 (410)
T TIGR02270 240 DAQAWLRELLQAAA--TRREALRAVGLVGDVEAAPWCLEAM 278 (410)
T ss_pred hHHHHHHHHhcChh--hHHHHHHHHHHcCCcchHHHHHHHh
Confidence 44444444443333 3334555555666655444444444
No 407
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=52.92 E-value=54 Score=26.45 Aligned_cols=57 Identities=11% Similarity=-0.055 Sum_probs=40.8
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhhc----C----CcHHHHHHHHHHHHHcCchHHHHHHHHHHH
Q 044786 257 QCGLVDMYGKCRLLRDAERVFELIVD----K----KNIASWNAMLVGYIRNGLYVEATKFLYLMK 313 (340)
Q Consensus 257 ~~~li~~~~~~~~~~~A~~~~~~~~~----~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 313 (340)
.-.+..-|.+.|++++|.++|+.+.. + ....+...+..++.+.|+.++.+.+.-+|.
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 34567778889999999999988853 1 233455567777788888888877766553
No 408
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=52.06 E-value=96 Score=28.59 Aligned_cols=98 Identities=10% Similarity=-0.008 Sum_probs=72.8
Q ss_pred cCChhHHHHHHhhcC----cCCcccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchh
Q 044786 59 CGQLDTARQLFDEMP----LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNME 134 (340)
Q Consensus 59 ~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 134 (340)
.|+...|...+.... ....++.-.|...+.+.|....|-.++.+.+... .....++..+.+++....+++
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~------~sepl~~~~~g~~~l~l~~i~ 693 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN------SSEPLTFLSLGNAYLALKNIS 693 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc------ccCchHHHhcchhHHHHhhhH
Confidence 488888888776654 2244556667778888888899999999888763 345567888899999999999
Q ss_pred hHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 044786 135 LGKQVHGLLFKLGSSRNISLTGSLINFYG 163 (340)
Q Consensus 135 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 163 (340)
.|++.|+...+.... +...-+.|...-|
T Consensus 694 ~a~~~~~~a~~~~~~-~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 694 GALEAFRQALKLTTK-CPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHHhcCCC-ChhhHHHHHHHHH
Confidence 999999998877643 4555555555444
No 409
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=51.89 E-value=83 Score=22.26 Aligned_cols=43 Identities=9% Similarity=-0.037 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHH
Q 044786 95 ECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHG 141 (340)
Q Consensus 95 ~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 141 (340)
.+.++|..|...+.|. -.+..|......+...|++++|.++|+
T Consensus 81 ~~~~if~~l~~~~IG~----~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGT----KLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTST----TBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccH----HHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5666666666663332 334445555555555555555555554
No 410
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=51.75 E-value=1.3e+02 Score=24.53 Aligned_cols=63 Identities=19% Similarity=0.135 Sum_probs=37.5
Q ss_pred cHHHHHHHHHHHhccCCHHHHHHHHHHhhc-----------------CC-cHHH-HHHHHHHHHHcCchHHHHHHHHHHH
Q 044786 253 DEYVQCGLVDMYGKCRLLRDAERVFELIVD-----------------KK-NIAS-WNAMLVGYIRNGLYVEATKFLYLMK 313 (340)
Q Consensus 253 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-----------------~~-~~~~-~~~li~~~~~~~~~~~a~~~~~~m~ 313 (340)
++..-..+...|.+.|++.+|+.-|-.-.+ .| +... ....+--|.-.++...|..+++...
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~ 168 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDTFT 168 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 666777788888888888888875532210 11 1111 1223334566788888888887776
Q ss_pred Hc
Q 044786 314 AS 315 (340)
Q Consensus 314 ~~ 315 (340)
+.
T Consensus 169 ~~ 170 (260)
T PF04190_consen 169 SK 170 (260)
T ss_dssp HH
T ss_pred HH
Confidence 55
No 411
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.50 E-value=2.3e+02 Score=27.23 Aligned_cols=74 Identities=11% Similarity=0.081 Sum_probs=48.1
Q ss_pred chhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCc-CCcccHHHHHHHHHc
Q 044786 11 DMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL-RDFNSWAVMIVGYVD 89 (340)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~ 89 (340)
......|..+...|+++.|-...-.|... +..-|..-+..+...++......+.-.-.. -+...|..++..+..
T Consensus 393 kv~~~yI~HLl~~~~y~~Aas~~p~m~gn-----~~~eWe~~V~~f~e~~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 393 KVGKTYIDHLLFEGKYDEAASLCPKMLGN-----NAAEWELWVFKFAELDQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred HHHHHHHHHHHhcchHHHHHhhhHHHhcc-----hHHHHHHHHHHhccccccchhhccCCCCCcccCchHHHHHHHHHHH
Confidence 34566777888888888888877777654 666676666666666666554444332222 245568877777765
No 412
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=50.38 E-value=1e+02 Score=25.82 Aligned_cols=70 Identities=16% Similarity=0.271 Sum_probs=51.6
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCcCCcccHHHHHHHHHc----------ccChhHHHHH
Q 044786 30 FELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVD----------VADYQECITL 99 (340)
Q Consensus 30 ~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~----------~g~~~~a~~~ 99 (340)
.++|+.++.. ++.|.-.++.-+.-.+.+.=.+.+++.+|+.+.... .-|..++..|+. .|++....++
T Consensus 263 ~EL~~~L~~~-~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~-~rfd~Ll~iCcsmlil~Re~il~~DF~~nmkL 340 (370)
T KOG4567|consen 263 EELWRHLEEK-EIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDP-QRFDFLLYICCSMLILVRERILEGDFTVNMKL 340 (370)
T ss_pred HHHHHHHHhc-CCCccchhHHHHHHHHhccCCchhHHHHHHHHhcCh-hhhHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 5788999988 999999999988888999999999999999887322 225555555542 3555555554
Q ss_pred HH
Q 044786 100 FA 101 (340)
Q Consensus 100 ~~ 101 (340)
++
T Consensus 341 LQ 342 (370)
T KOG4567|consen 341 LQ 342 (370)
T ss_pred Hh
Confidence 43
No 413
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=50.26 E-value=72 Score=21.04 Aligned_cols=56 Identities=13% Similarity=0.080 Sum_probs=25.4
Q ss_pred HcccChhHHHHHHHHHHHhhcCCccccch-----HHHHHHHHHHhhhccchhhHHHHHHHHHH
Q 044786 88 VDVADYQECITLFAEMMKRKKGHMLLVFP-----AWIIVCVLKACVCTMNMELGKQVHGLLFK 145 (340)
Q Consensus 88 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 145 (340)
.+.|++.+|.+.+.+.......- ..+. ....-.+.......|++++|.+.+++.++
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~--~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQS--NNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhc--ccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45677777755555544331000 0111 11222233344455666666666555543
No 414
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=50.02 E-value=2e+02 Score=26.17 Aligned_cols=158 Identities=9% Similarity=0.037 Sum_probs=99.2
Q ss_pred chhHHHHHHHHHHhhcCHHHHHHHHHHccc--CChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCChhhHH-HHHHh
Q 044786 151 NISLTGSLINFYGKFRCLEDADFVFSQLKR--HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFS-SVLKA 227 (340)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~-~ll~~ 227 (340)
|.....+++..+...-.++-.+.+..+|.. .+-..|-.++++|..+ ..++-..+|+++++.. .+...+. .+..-
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~d--fnDvv~~ReLa~~ 141 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYD--FNDVVIGRELADK 141 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc--chhHHHHHHHHHH
Confidence 555667788888888788878888777764 3566788888888888 5678888888888753 3333333 34444
Q ss_pred cccCCchhchHHHHHHHHHHhCCC-----ccHHHHHHHHHHHhccCCHHHHHHHHHHhhcC----CcHHHHHHHHHHHHH
Q 044786 228 CGGVDDDGNCGRQMHANIVKIGLE-----SDEYVQCGLVDMYGKCRLLRDAERVFELIVDK----KNIASWNAMLVGYIR 298 (340)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~li~~~~~ 298 (340)
|.+ ++... +..++......-++ .-..+|.-|+..- ..+.+....+...+..+ .-...+.-+-.-|..
T Consensus 142 yEk-ik~sk-~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 142 YEK-IKKSK-AAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHH-hchhh-HHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 444 55444 44444444333222 1234565555432 24566666666666542 244556666677888
Q ss_pred cCchHHHHHHHHHHHHc
Q 044786 299 NGLYVEATKFLYLMKAS 315 (340)
Q Consensus 299 ~~~~~~a~~~~~~m~~~ 315 (340)
..++++|++++....+.
T Consensus 218 ~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 218 NENWTEAIRILKHILEH 234 (711)
T ss_pred ccCHHHHHHHHHHHhhh
Confidence 99999999999865443
No 415
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=50.01 E-value=70 Score=29.04 Aligned_cols=117 Identities=10% Similarity=0.001 Sum_probs=0.0
Q ss_pred HHHHHhccCchhHHHHHHHHHhhcccCCChhhHHHHHHhcccCCchhchHHHHHHHHHHhCCCccHHHHHHHHHHHhccC
Q 044786 189 KIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCR 268 (340)
Q Consensus 189 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 268 (340)
++.-|.+.+++++|..++..|--.-....-..--..|..+.-...+....+..++.....-..|....-...+.-|.. .
T Consensus 414 L~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~~ey~d-~ 492 (545)
T PF11768_consen 414 LISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATVLEYRD-P 492 (545)
T ss_pred HHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHHHHHHH-H
Q ss_pred CHHHHHHHHHHhhcCCcHHHHHHHHHHHHHcCchHHHHHHHHHHHHcCCccchh
Q 044786 269 LLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQES 322 (340)
Q Consensus 269 ~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~ 322 (340)
=.+-|+++|..+ .+.+++++|..+--++-+.++-.|.+
T Consensus 493 V~~~aRRfFhhL----------------LR~~rfekAFlLAvdi~~~DLFmdlh 530 (545)
T PF11768_consen 493 VSDLARRFFHHL----------------LRYQRFEKAFLLAVDIGDRDLFMDLH 530 (545)
T ss_pred HHHHHHHHHHHH----------------HHhhHHHHHHHHHHhccchHHHHHHH
No 416
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=49.88 E-value=2.1e+02 Score=26.22 Aligned_cols=73 Identities=15% Similarity=0.105 Sum_probs=41.3
Q ss_pred HHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhc---------------CCcHHHHHHHHHHHHHcCchHHHHHHH
Q 044786 245 IVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD---------------KKNIASWNAMLVGYIRNGLYVEATKFL 309 (340)
Q Consensus 245 ~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---------------~~~~~~~~~li~~~~~~~~~~~a~~~~ 309 (340)
+.+.|+..+......++... .|++..|...++.+.. .+.......++.++ ..++.++|+.++
T Consensus 188 ~~~egi~i~~~Al~~ia~~s--~GdlR~aln~Lekl~~~~~~It~~~V~~~l~~~~~~~if~Li~al-~~~d~~~Al~~l 264 (504)
T PRK14963 188 LEAEGREAEPEALQLVARLA--DGAMRDAESLLERLLALGTPVTRKQVEEALGLPPQERLRGIAAAL-AQGDAAEALSGA 264 (504)
T ss_pred HHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCcHHHHHHHHHHH-HcCCHHHHHHHH
Confidence 34445555555444444332 3556666555554322 12222233445555 568899999999
Q ss_pred HHHHHcCCccc
Q 044786 310 YLMKASGIQIQ 320 (340)
Q Consensus 310 ~~m~~~g~~~~ 320 (340)
+++...|..|.
T Consensus 265 ~~Ll~~G~~~~ 275 (504)
T PRK14963 265 AQLYRDGFAAR 275 (504)
T ss_pred HHHHHcCCCHH
Confidence 99999986654
No 417
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=49.30 E-value=1.6e+02 Score=24.71 Aligned_cols=61 Identities=8% Similarity=-0.051 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhhcCCcHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Q 044786 254 EYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKA 314 (340)
Q Consensus 254 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 314 (340)
+..-..++....+.|+.+.-..+++.....++......++.+++-..+.+...++++....
T Consensus 169 ~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~ 229 (324)
T PF11838_consen 169 PDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLDLLLS 229 (324)
T ss_dssp HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHHHHcC
Confidence 3333444444444444444444444444334444444444444444444444444444444
No 418
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=49.22 E-value=94 Score=22.12 Aligned_cols=46 Identities=22% Similarity=0.180 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhcC
Q 044786 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283 (340)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 283 (340)
...-+..+....+.|++.+...-+.++-+.+++..|.++|+.++.+
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4555666777788999999999999999999999999999999864
No 419
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=48.89 E-value=39 Score=25.39 Aligned_cols=41 Identities=5% Similarity=-0.037 Sum_probs=22.0
Q ss_pred HHHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhc
Q 044786 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282 (340)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 282 (340)
+.+.+...|++++..-. .++..+...++.-.|.++++.+.+
T Consensus 13 ~~~~L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~ 53 (169)
T PRK11639 13 AEKLCAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLRE 53 (169)
T ss_pred HHHHHHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHh
Confidence 34445566666655543 344444444555566666666654
No 420
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=48.85 E-value=1.3e+02 Score=23.58 Aligned_cols=85 Identities=7% Similarity=-0.003 Sum_probs=41.7
Q ss_pred HhcCChhHHHHHHhhcCc--CCc------ccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhh
Q 044786 57 VSCGQLDTARQLFDEMPL--RDF------NSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACV 128 (340)
Q Consensus 57 ~~~~~~~~a~~~~~~~~~--~~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~ 128 (340)
.+.|++++|..-|..... |.. ..|..-..++.+.+.++.|+.--.+.++.+ +......-.-..+|.
T Consensus 106 F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~------pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 106 FKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN------PTYEKALERRAEAYE 179 (271)
T ss_pred hhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC------chhHHHHHHHHHHHH
Confidence 445555555555544331 111 123333344555566666665555555552 222333333345566
Q ss_pred hccchhhHHHHHHHHHHcC
Q 044786 129 CTMNMELGKQVHGLLFKLG 147 (340)
Q Consensus 129 ~~~~~~~a~~~~~~~~~~~ 147 (340)
+...++.|+.=|+.+.+..
T Consensus 180 k~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESD 198 (271)
T ss_pred hhhhHHHHHHHHHHHHHhC
Confidence 6666666666666666554
No 421
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=48.41 E-value=86 Score=21.41 Aligned_cols=22 Identities=14% Similarity=0.128 Sum_probs=11.7
Q ss_pred HHHHHhccCchhHHHHHHHHHh
Q 044786 189 KIVNNCREGHFHQVFNDFKEMG 210 (340)
Q Consensus 189 li~~~~~~~~~~~a~~~~~~m~ 210 (340)
++.-|...+++++|..-+.++.
T Consensus 8 ~l~ey~~~~D~~ea~~~l~~L~ 29 (113)
T smart00544 8 IIEEYLSSGDTDEAVHCLLELK 29 (113)
T ss_pred HHHHHHHcCCHHHHHHHHHHhC
Confidence 3444555555555555555553
No 422
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=48.22 E-value=98 Score=22.00 Aligned_cols=111 Identities=8% Similarity=0.061 Sum_probs=59.7
Q ss_pred HHHHHHHHHcccCChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCChhh--H-HHHHHhcccCC------chhchHH
Q 044786 169 EDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYT--F-SSVLKACGGVD------DDGNCGR 239 (340)
Q Consensus 169 ~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t--~-~~ll~~~~~~~------~~~~~~~ 239 (340)
.-|.+++......+ -+...++.+.+..-.-.++++..++....-.|..+. | +.-|..|.... +..+..-
T Consensus 6 ~IA~~~l~~l~~s~--~~~~yld~lv~~~~sl~s~EvVn~L~~~~~~p~efl~~yI~~cI~~ce~~kd~~~q~R~VRlvc 83 (126)
T PF10155_consen 6 NIAIEILVKLINSP--NFKEYLDVLVSMDMSLHSMEVVNRLTTSFSLPQEFLHMYISNCIKSCESIKDKYMQNRLVRLVC 83 (126)
T ss_pred HHHHHHHHHHcCCc--hHHHHHHHHHcCCCchhHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHhhcccccccchhhhHH
Confidence 33444444443332 255556666666667777777777777654454321 1 23333433211 2223344
Q ss_pred HHHHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhh
Q 044786 240 QMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIV 281 (340)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 281 (340)
.+.+.+.+.++.-....+.-+=..|.+-.+..+|-.+|+-++
T Consensus 84 vfl~sLir~~i~~~~~l~~evq~FClefs~i~Ea~~L~kllk 125 (126)
T PF10155_consen 84 VFLQSLIRNKIIDVEDLFIEVQAFCLEFSRIKEASALFKLLK 125 (126)
T ss_pred HHHHHHHHcCCCchHHHHhhHHHHHHHHccHHHHHHHHHHHh
Confidence 455566666665555555555555666666777777766553
No 423
>PRK13342 recombination factor protein RarA; Reviewed
Probab=48.10 E-value=2e+02 Score=25.47 Aligned_cols=70 Identities=9% Similarity=-0.024 Sum_probs=42.9
Q ss_pred HHHHHHHHhc---cCchhHHHHHHHHHhhcccCCChhhHHHHHHhcccCCchhc----hHHHHHHHHHHhCCCccHH
Q 044786 186 WTAKIVNNCR---EGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGN----CGRQMHANIVKIGLESDEY 255 (340)
Q Consensus 186 ~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 255 (340)
+..++.++.+ ..+++.|+..+.+|.+.|..|....-..++.++...|.-+. .+...++.....|++--..
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~~~~g~pe~~~ 306 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAVERIGMPEGRI 306 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 3444555554 57899999999999999988876555555555544443221 2334455555666654433
No 424
>PHA02875 ankyrin repeat protein; Provisional
Probab=47.95 E-value=1.5e+02 Score=25.98 Aligned_cols=201 Identities=10% Similarity=-0.092 Sum_probs=101.4
Q ss_pred HHHHHHHHHhhcCCccccchHH--HHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchh--HHHHHHHHHHhhcCHHHHH
Q 044786 97 ITLFAEMMKRKKGHMLLVFPAW--IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNIS--LTGSLINFYGKFRCLEDAD 172 (340)
Q Consensus 97 ~~~~~~m~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~ 172 (340)
.++++.+.+. |. .|+.. .....+..++..|+.+ +.+.+.+.|..|+.. ...+.+...++.|+.+.+.
T Consensus 15 ~~iv~~Ll~~--g~---~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~ 85 (413)
T PHA02875 15 LDIARRLLDI--GI---NPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVE 85 (413)
T ss_pred HHHHHHHHHC--CC---CCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHH
Confidence 6778888877 44 33332 1233445555666665 445556667655432 1233456667788988888
Q ss_pred HHHHHcccC----ChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCChhh--HHHHHHhcccCCchhchHHHHHHHHH
Q 044786 173 FVFSQLKRH----NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYT--FSSVLKACGGVDDDGNCGRQMHANIV 246 (340)
Q Consensus 173 ~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t--~~~ll~~~~~~~~~~~~~~~~~~~~~ 246 (340)
.+++.-... +..-.+. +...+..|+. ++++.+.+.|..|+... -.+.+...+..|+. + +.+.+.
T Consensus 86 ~Ll~~~~~~~~~~~~~g~tp-L~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~-~----~v~~Ll 155 (413)
T PHA02875 86 ELLDLGKFADDVFYKDGMTP-LHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDI-K----GIELLI 155 (413)
T ss_pred HHHHcCCcccccccCCCCCH-HHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCH-H----HHHHHH
Confidence 777653321 1111222 3333445554 45566666776665322 11233333445554 3 333444
Q ss_pred HhCCCccH---HHHHHHHHHHhccCCHHHHHHHHHHhhcCCcHH---HHHHHHHHHHHcCchHHHHHHHHHHHHcCCccc
Q 044786 247 KIGLESDE---YVQCGLVDMYGKCRLLRDAERVFELIVDKKNIA---SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQ 320 (340)
Q Consensus 247 ~~~~~~~~---~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~ 320 (340)
+.|..++. .-. +.+...+..|+.+-+..+++.-. .++.. ...+.+..-+..|+. ++.+-+.+.|..++
T Consensus 156 ~~g~~~~~~d~~g~-TpL~~A~~~g~~eiv~~Ll~~ga-~~n~~~~~~~~t~l~~A~~~~~~----~iv~~Ll~~gad~n 229 (413)
T PHA02875 156 DHKACLDIEDCCGC-TPLIIAMAKGDIAICKMLLDSGA-NIDYFGKNGCVAALCYAIENNKI----DIVRLFIKRGADCN 229 (413)
T ss_pred hcCCCCCCCCCCCC-CHHHHHHHcCCHHHHHHHHhCCC-CCCcCCCCCCchHHHHHHHcCCH----HHHHHHHHCCcCcc
Confidence 55554432 222 23344455677776665555432 22211 112333333455654 45566677888877
Q ss_pred hh
Q 044786 321 ES 322 (340)
Q Consensus 321 ~~ 322 (340)
..
T Consensus 230 ~~ 231 (413)
T PHA02875 230 IM 231 (413)
T ss_pred hH
Confidence 54
No 425
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=47.92 E-value=68 Score=20.12 Aligned_cols=31 Identities=19% Similarity=0.100 Sum_probs=19.3
Q ss_pred CHHHHHHHHHHhhc--CCcHHHHHHHHHHHHHc
Q 044786 269 LLRDAERVFELIVD--KKNIASWNAMLVGYIRN 299 (340)
Q Consensus 269 ~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~ 299 (340)
+.+.|..++..++. +.++..||++..-+.++
T Consensus 12 DtEmA~~mL~DLr~dekRsPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDEKRSPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHHHhcchhhcChHHHHHHHHHHHHc
Confidence 45666777776665 35667777766655544
No 426
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=47.51 E-value=34 Score=16.47 Aligned_cols=29 Identities=7% Similarity=0.045 Sum_probs=18.6
Q ss_pred cchhhHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 044786 24 KDSAGAFELLNHIRKRVNIKPTLLFLNRLLL 54 (340)
Q Consensus 24 ~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~ 54 (340)
|+.+.|.++|+.+... .+-+...|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~--~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEK--FPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHH--CCCChHHHHHHHH
Confidence 4567788888888766 3445566655543
No 427
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=47.35 E-value=2.3e+02 Score=26.12 Aligned_cols=273 Identities=12% Similarity=0.080 Sum_probs=138.1
Q ss_pred hhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh-cCChhHHHHHHhhcCc------CCcccHHHHHHHHHcccCh
Q 044786 21 TFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVS-CGQLDTARQLFDEMPL------RDFNSWAVMIVGYVDVADY 93 (340)
Q Consensus 21 ~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~g~~ 93 (340)
.+.|..+.+.++|++... |++.+...|...+..++. .|+.+...+.|+.... .+...|...|.--....++
T Consensus 90 ~klg~~~~s~~Vfergv~--aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~ 167 (577)
T KOG1258|consen 90 YKLGNAENSVKVFERGVQ--AIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSW 167 (577)
T ss_pred HHhhhHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccH
Confidence 356778888888888876 477777777776655543 4677777777777652 1444688888877888888
Q ss_pred hHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhh-----ccchhhHHHHHHHHHHc--------------------CC
Q 044786 94 QECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVC-----TMNMELGKQVHGLLFKL--------------------GS 148 (340)
Q Consensus 94 ~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~--------------------~~ 148 (340)
.....++++.++.. . .--...|.......-. ....+++.++-...... +-
T Consensus 168 k~v~~iyeRileiP--~---~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~ 242 (577)
T KOG1258|consen 168 KRVANIYERILEIP--L---HQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTD 242 (577)
T ss_pred HHHHHHHHHHHhhh--h---hHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccC
Confidence 88888888887652 1 0001111111111111 11233333332222210 00
Q ss_pred -CCchh-HHHHHH-------HHHHhhcCHHHHHHHHHHccc-C----------ChhhHHHHHHHHhccCchhHHHHHHHH
Q 044786 149 -SRNIS-LTGSLI-------NFYGKFRCLEDADFVFSQLKR-H----------NTVVWTAKIVNNCREGHFHQVFNDFKE 208 (340)
Q Consensus 149 -~~~~~-~~~~l~-------~~~~~~~~~~~a~~~~~~~~~-~----------~~~~~~~li~~~~~~~~~~~a~~~~~~ 208 (340)
.+... .-+.+- .+|-..-...+....|+.-.+ | +..+|+..+.--...|+.+.+.-+|++
T Consensus 243 ~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~er 322 (577)
T KOG1258|consen 243 PSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFER 322 (577)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHH
Confidence 00000 000000 011111111122222222111 1 445677778878888888888888887
Q ss_pred HhhcccCCChh--hHHHHHHhcccCCchhchHHHHHHHHHHhCCC--ccHHHHHHHHHHHhccCCHHHHHHHHHHhhcC-
Q 044786 209 MGRERIKKNSY--TFSSVLKACGGVDDDGNCGRQMHANIVKIGLE--SDEYVQCGLVDMYGKCRLLRDAERVFELIVDK- 283 (340)
Q Consensus 209 m~~~~~~p~~~--t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~- 283 (340)
..-.--.-+.+ -|...+.+. |+. ..+..+.....+.-.+ |....+.+.+. -..|+++.|..+++.+..+
T Consensus 323 cli~cA~Y~efWiky~~~m~~~---~~~-~~~~~~~~~~~~i~~k~~~~i~L~~a~f~--e~~~n~~~A~~~lq~i~~e~ 396 (577)
T KOG1258|consen 323 CLIPCALYDEFWIKYARWMESS---GDV-SLANNVLARACKIHVKKTPIIHLLEARFE--ESNGNFDDAKVILQRIESEY 396 (577)
T ss_pred HHhHHhhhHHHHHHHHHHHHHc---Cch-hHHHHHHHhhhhhcCCCCcHHHHHHHHHH--HhhccHHHHHHHHHHHHhhC
Confidence 75321111211 133333333 554 3355444444433322 33333333332 2357899999999888764
Q ss_pred CcH-HHHHHHHHHHHHcCchHHHH
Q 044786 284 KNI-ASWNAMLVGYIRNGLYVEAT 306 (340)
Q Consensus 284 ~~~-~~~~~li~~~~~~~~~~~a~ 306 (340)
|+. ..-..-+....+.|+.+.+-
T Consensus 397 pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 397 PGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred CchhhhHHHHHhHHHHhcchhhhh
Confidence 322 22223344556777777776
No 428
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.34 E-value=2.9e+02 Score=27.24 Aligned_cols=36 Identities=14% Similarity=0.017 Sum_probs=17.6
Q ss_pred hccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 044786 129 CTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164 (340)
Q Consensus 129 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 164 (340)
.....+-+..+++.+....-.++....+.++..|++
T Consensus 603 ~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 603 KSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred hhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 333445555555555544444444455555555543
No 429
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=47.16 E-value=1.8e+02 Score=24.81 Aligned_cols=184 Identities=7% Similarity=-0.014 Sum_probs=97.4
Q ss_pred CCccccchHH---HHHHHHHHhhhcc---chhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHcccCC
Q 044786 109 GHMLLVFPAW---IIVCVLKACVCTM---NMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN 182 (340)
Q Consensus 109 ~~~~~~~~~~---~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 182 (340)
.+..++|+.. .|++.++.-.... .++.|..++.-=... ...-..-.-.+.+.+++.++-+.+..+-+.+..-.
T Consensus 118 NPy~FkP~~~klA~fhA~v~~~L~~p~S~yye~a~~Ylsg~~~~-~~WQ~lGLQGIAD~~aRl~~~~~~~~l~~al~~lP 196 (340)
T PF12069_consen 118 NPYTFKPSQEKLAMFHAQVRAQLGQPASQYYEHAQAYLSGQLGW-DNWQTLGLQGIADICARLDQEDNAQLLRKALPHLP 196 (340)
T ss_pred CCcccCCChHHHHHHHHHHHHHcCCCcchhHHHHHHHHcCCcch-hHHHHhhhhHHHHHHHHhcccchHHHHHHHHhhCC
Confidence 4445677775 5666666544432 355555544210000 00011122356677888888777777766666555
Q ss_pred hhhHHHHHHHHhccCchhHH-HHHHHHHhhcccCCChhhHHHHHHhcccCCchhchHHHHHHHHHHhCCCccHHHHHHHH
Q 044786 183 TVVWTAKIVNNCREGHFHQV-FNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLV 261 (340)
Q Consensus 183 ~~~~~~li~~~~~~~~~~~a-~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 261 (340)
.....++..++-...-.+.. ..+++..... ||......++.+.+....... .......+.......+..+.-++.
T Consensus 197 ~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~~---~d~~~~~a~lRAls~~~~~~~-~~~~i~~~L~~~~~~~~e~Li~IA 272 (340)
T PF12069_consen 197 PEVLYALCGCLEHQPLPDKLAEALLERLEQA---PDLELLSALLRALSSAPASDL-VAILIDALLQSPRLCHPEVLIAIA 272 (340)
T ss_pred hHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHcCCCchhH-HHHHHHHHhcCcccCChHHHHHHH
Confidence 55666666665555444433 3444444443 888888999999888776533 444344444443333343332222
Q ss_pred H-HHhccCCHHHHHHHHHHhhcCCcHHHHHHHHHHHH
Q 044786 262 D-MYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYI 297 (340)
Q Consensus 262 ~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~li~~~~ 297 (340)
. +.....+.+.+..+++++-..+|...++.+..=++
T Consensus 273 gR~W~~L~d~~~l~~fle~LA~~~~~~lF~qlfaDLv 309 (340)
T PF12069_consen 273 GRCWQWLKDPQLLRLFLERLAQQDDQALFNQLFADLV 309 (340)
T ss_pred hcCchhcCCHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 2 12223456666666666665555555555444333
No 430
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=46.69 E-value=82 Score=20.70 Aligned_cols=29 Identities=17% Similarity=0.037 Sum_probs=13.6
Q ss_pred cHHHHHHHHHHHhccCCHHHHHHHHHHhh
Q 044786 253 DEYVQCGLVDMYGKCRLLRDAERVFELIV 281 (340)
Q Consensus 253 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 281 (340)
|...--.+...+...|+++.|.+.+-.+.
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v 49 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELV 49 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33444445555555555555555544444
No 431
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=46.33 E-value=1.6e+02 Score=24.01 Aligned_cols=28 Identities=18% Similarity=-0.091 Sum_probs=14.1
Q ss_pred chhHHHHHHHHHHhhcCHHHHHHHHHHc
Q 044786 151 NISLTGSLINFYGKFRCLEDADFVFSQL 178 (340)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 178 (340)
++.....+...|.+.|++.+|+..|-.-
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~ 116 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLG 116 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhc
Confidence 3445555555566666665555554433
No 432
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=46.13 E-value=1.5e+02 Score=23.57 Aligned_cols=28 Identities=11% Similarity=-0.120 Sum_probs=17.8
Q ss_pred hhHHHHHHHHhccCchhHHHHHHHHHhh
Q 044786 184 VVWTAKIVNNCREGHFHQVFNDFKEMGR 211 (340)
Q Consensus 184 ~~~~~li~~~~~~~~~~~a~~~~~~m~~ 211 (340)
.||--+.+-+...|+.++|..+|+-...
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 3555566666666777777766666554
No 433
>PF07218 RAP1: Rhoptry-associated protein 1 (RAP-1); InterPro: IPR009864 This family consists of several rhoptry-associated protein 1 (RAP-1) sequences which appear to be specific to Plasmodium falciparum [].
Probab=46.02 E-value=2.4e+02 Score=25.84 Aligned_cols=135 Identities=16% Similarity=0.146 Sum_probs=77.0
Q ss_pred HHHhhc--CHHHHHHHHHHcccC---------ChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCChhhHHHHHHhcc
Q 044786 161 FYGKFR--CLEDADFVFSQLKRH---------NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229 (340)
Q Consensus 161 ~~~~~~--~~~~a~~~~~~~~~~---------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~ 229 (340)
-|.... ++-+|.++++.+.++ ++..||++|.+- .++...++.-|.+.|+-. ...|.+++.-.-
T Consensus 587 ~Y~~~d~~nI~~a~~my~~i~e~~RlyssCfKN~iIYNaVISgI-----heqmK~lmkl~PR~~iL~-DiHF~aLL~K~k 660 (782)
T PF07218_consen 587 KYVEHDKSNIYEALQMYSYIAEYIRLYSSCFKNMIIYNAVISGI-----HEQMKNLMKLMPRKPILK-DIHFEALLNKEK 660 (782)
T ss_pred HHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHH-----HHHHHHHHHhCCCcchhH-HHHHHHHhhhcc
Confidence 344444 667777777777653 778889888654 466777777777766533 456777776665
Q ss_pred cCCchhchHHHHHHHHHHhCCCccHHH----------HHHHHHHHhccCCHHHHHHHHHHhhc----------------C
Q 044786 230 GVDDDGNCGRQMHANIVKIGLESDEYV----------QCGLVDMYGKCRLLRDAERVFELIVD----------------K 283 (340)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~li~~~~~~~~~~~A~~~~~~~~~----------------~ 283 (340)
+.....+ ...+. ..|++.+ ...+|+.|....+- +...+..+|+- .
T Consensus 661 Kp~K~~~-td~v~-------YdPTVKsyAL~~LeR~PmvsvInsfFEaKKK-~Ls~i~aqmKLDlfSL~nedlKiP~d~~ 731 (782)
T PF07218_consen 661 KPQKITR-TDYVL-------YDPTVKSYALTELEREPMVSVINSFFEAKKK-DLSDIMAQMKLDLFSLTNEDLKIPNDKG 731 (782)
T ss_pred ccccccc-cccee-------cCchHHHHHhhhhccchHHHHHHHHHHHHHH-HHHHHHHHHhhhHHhhccccccCCCCCC
Confidence 4221111 00010 2233332 24566776654432 22333334431 2
Q ss_pred CcHHHHHHHHHHHHHcCchHHHHHHHHHHHHc
Q 044786 284 KNIASWNAMLVGYIRNGLYVEATKFLYLMKAS 315 (340)
Q Consensus 284 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 315 (340)
|+...+..||.-|- .+...+|++|...
T Consensus 732 ~nsKL~~kLiskYK-----~EIK~~FkEMr~d 758 (782)
T PF07218_consen 732 ANSKLTAKLISKYK-----KEIKKLFKEMRDD 758 (782)
T ss_pred cchHHHHHHHHHHH-----HHHHHHHHHHHHH
Confidence 46667777777773 4567789999765
No 434
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.99 E-value=1.6e+02 Score=23.76 Aligned_cols=21 Identities=14% Similarity=0.281 Sum_probs=13.8
Q ss_pred HHHHhhcCHHHHHHHHHHccc
Q 044786 160 NFYGKFRCLEDADFVFSQLKR 180 (340)
Q Consensus 160 ~~~~~~~~~~~a~~~~~~~~~ 180 (340)
..-...+++.+|..+|+++..
T Consensus 162 ~yaa~leqY~~Ai~iyeqva~ 182 (288)
T KOG1586|consen 162 QYAAQLEQYSKAIDIYEQVAR 182 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334455777788888877653
No 435
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=45.59 E-value=2.4e+02 Score=25.65 Aligned_cols=35 Identities=11% Similarity=0.072 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHcCCccchh
Q 044786 288 SWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQES 322 (340)
Q Consensus 288 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~ 322 (340)
....++.+....+....|+.++.+|.+.|..|...
T Consensus 250 ~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~ 284 (484)
T PRK14956 250 FLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKF 284 (484)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHH
Confidence 34445555554445568888999999888877654
No 436
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=45.36 E-value=2.6e+02 Score=26.95 Aligned_cols=172 Identities=11% Similarity=0.136 Sum_probs=94.1
Q ss_pred hhhHHHHHHHHHhhcCCCCC---HHHHHHHHHHHHhcCChhHHHHHHhhcCc-CC---------cc-cHHHHHHHHHccc
Q 044786 26 SAGAFELLNHIRKRVNIKPT---LLFLNRLLLMHVSCGQLDTARQLFDEMPL-RD---------FN-SWAVMIVGYVDVA 91 (340)
Q Consensus 26 ~~~a~~~~~~m~~~~g~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~---------~~-~~~~li~~~~~~g 91 (340)
-++-...+.+|..+ --.|+ ..+...++-.|-...+++...++.+.++. || +. .|...++---+-|
T Consensus 179 G~~l~~~L~~mR~R-lDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~G 257 (1226)
T KOG4279|consen 179 GDQLNDYLDKMRTR-LDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPG 257 (1226)
T ss_pred cHHHHHHHHHHHhh-cCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCc
Confidence 34455667777765 22333 45555666677777778888887777662 21 11 2443444444557
Q ss_pred ChhHHHHHHHHHHHhhcCCccccchHH-----HHHHHH--HHhhhccchhhHHHHHHHHHHcCCCCchh---HHHHHH--
Q 044786 92 DYQECITLFAEMMKRKKGHMLLVFPAW-----IIVCVL--KACVCTMNMELGKQVHGLLFKLGSSRNIS---LTGSLI-- 159 (340)
Q Consensus 92 ~~~~a~~~~~~m~~~~~~~~~~~~~~~-----~~~~ll--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~-- 159 (340)
+-++|+...-.+.+.. |. +.||.. .|..+. +.|...+..+.|.+.|+..-+. +|+.. -+..|+
T Consensus 258 DRakAL~~~l~lve~e-g~--vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFev--eP~~~sGIN~atLL~a 332 (1226)
T KOG4279|consen 258 DRAKALNTVLPLVEKE-GP--VAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEV--EPLEYSGINLATLLRA 332 (1226)
T ss_pred cHHHHHHHHHHHHHhc-CC--CCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhcc--CchhhccccHHHHHHH
Confidence 7777777777777665 33 266654 333332 3344555666777777665443 22221 122222
Q ss_pred -------------------HHHHhhcCHHHHHHHHHHcccCChhhHHHHHHHHhccCchhHHHHHHHHHhhc
Q 044786 160 -------------------NFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRE 212 (340)
Q Consensus 160 -------------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 212 (340)
..+.+.|.+++..+.|+ +.+ .+.+-.-.+++.+|+..-+.|.+.
T Consensus 333 aG~~Fens~Elq~IgmkLn~LlgrKG~leklq~YWd------V~~---y~~asVLAnd~~kaiqAae~mfKL 395 (1226)
T KOG4279|consen 333 AGEHFENSLELQQIGMKLNSLLGRKGALEKLQEYWD------VAT---YFEASVLANDYQKAIQAAEMMFKL 395 (1226)
T ss_pred hhhhccchHHHHHHHHHHHHHhhccchHHHHHHHHh------HHH---hhhhhhhccCHHHHHHHHHHHhcc
Confidence 23344444444444443 222 244455577888888888888764
No 437
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=45.27 E-value=79 Score=20.08 Aligned_cols=60 Identities=12% Similarity=0.070 Sum_probs=28.4
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHhhcCcCCcccHHHHHHHHHcccChhHHHHHHHHHH
Q 044786 44 PTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMM 104 (340)
Q Consensus 44 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 104 (340)
++...-...+...++.++.+-...+.+.+..+|..+-...+.++.+.|+ +++...+.++.
T Consensus 12 ~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~-~~~~~~L~~~l 71 (88)
T PF13646_consen 12 PDPQVRAEAARALGELGDPEAIPALIELLKDEDPMVRRAAARALGRIGD-PEAIPALIKLL 71 (88)
T ss_dssp SSHHHHHHHHHHHHCCTHHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH-HHTHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-HHHHHHHHHHH
Confidence 3444444555555555544333334444444455555555555555553 33444444443
No 438
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=45.11 E-value=76 Score=21.79 Aligned_cols=49 Identities=16% Similarity=0.174 Sum_probs=36.7
Q ss_pred HHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhH
Q 044786 15 CLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDT 64 (340)
Q Consensus 15 ~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~ 64 (340)
.++..+...+..-.|.++++.+.+. +...+..|.-..++.+...|-+..
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~-~~~i~~~TVYR~L~~L~~~Gli~~ 53 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKK-GPSISLATVYRTLELLEEAGLVRE 53 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhCCCEEE
Confidence 3566666667778899999999887 767777777777888888776543
No 439
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=44.66 E-value=1.9e+02 Score=24.32 Aligned_cols=74 Identities=11% Similarity=-0.015 Sum_probs=38.0
Q ss_pred HHhccCchhHHHHHHHHHhhcccCCChh----hHHHHHHhcccCCchhchHHHHHHHHHHhCCCccHHHHHHHHHHHhcc
Q 044786 192 NNCREGHFHQVFNDFKEMGRERIKKNSY----TFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKC 267 (340)
Q Consensus 192 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~----t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 267 (340)
-..+...+++.....++-.+..--|+.. .|+.++.+-.-..+-+..+.+..+. ...|..|+.+++.+
T Consensus 264 q~s~e~p~~evi~~VKee~k~~nlPe~eVi~ivWs~iMsaveWnKkeelva~qalrh---------lK~yaPLL~af~s~ 334 (412)
T KOG2297|consen 264 QVSEEDPVKEVILYVKEEMKRNNLPETEVIGIVWSGIMSAVEWNKKEELVAEQALRH---------LKQYAPLLAAFCSQ 334 (412)
T ss_pred HhccCCCHHHHHHHHHHHHHhcCCCCceEEeeeHhhhhHHHhhchHHHHHHHHHHHH---------HHhhhHHHHHHhcC
Confidence 3334445666666655544443345543 3555555433222222223333333 34677788888888
Q ss_pred CCHHHHH
Q 044786 268 RLLRDAE 274 (340)
Q Consensus 268 ~~~~~A~ 274 (340)
|+.+...
T Consensus 335 g~sEL~L 341 (412)
T KOG2297|consen 335 GQSELEL 341 (412)
T ss_pred ChHHHHH
Confidence 8776543
No 440
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=44.59 E-value=2.6e+02 Score=25.96 Aligned_cols=61 Identities=8% Similarity=0.038 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHhhcCcCC-cccHHHHHHHHHcccChhHHHHHHHHHHHh
Q 044786 44 PTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRD-FNSWAVMIVGYVDVADYQECITLFAEMMKR 106 (340)
Q Consensus 44 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 106 (340)
+....+..|+..+ |.=+.+.-.++++++.. . ...+..++++....|-.....-+.+.+...
T Consensus 308 ~~~~~f~~lv~~l-R~~~~e~l~~l~~~~~~-~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~ 369 (574)
T smart00638 308 PAAAKFLRLVRLL-RTLSEEQLEQLWRQLYE-KKKKARRIFLDAVAQAGTPPALKFIKQWIKNK 369 (574)
T ss_pred chHHHHHHHHHHH-HhCCHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Confidence 3455666666664 44456666666666654 3 467788888888888766665555555544
No 441
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=43.65 E-value=2.3e+02 Score=25.05 Aligned_cols=236 Identities=8% Similarity=-0.032 Sum_probs=135.2
Q ss_pred HHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCcCCcccHHHHHHHHHcccChhHH
Q 044786 17 IKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQEC 96 (340)
Q Consensus 17 i~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 96 (340)
|+++...| ..+.+.+...... .++...+.....++....+...+..+.+.+..++..+-.....++...+.....
T Consensus 45 LdgL~~~G--~~a~~~L~~aL~~---d~~~ev~~~aa~al~~~~~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~ 119 (410)
T TIGR02270 45 VDGLVLAG--KAATELLVSALAE---ADEPGRVACAALALLAQEDALDLRSVLAVLQAGPEGLCAGIQAALGWLGGRQAE 119 (410)
T ss_pred HHHHHHhh--HhHHHHHHHHHhh---CCChhHHHHHHHHHhccCChHHHHHHHHHhcCCCHHHHHHHHHHHhcCCchHHH
Confidence 56666666 4566666555533 233444444444444333333356666777777777888889999888776555
Q ss_pred HHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHH
Q 044786 97 ITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFS 176 (340)
Q Consensus 97 ~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 176 (340)
.. +..+.+. ++...-...+.++...+. + ....+....+ .++..+-..-+.++...+..+....+..
T Consensus 120 ~~-L~~~L~~--------~~p~vR~aal~al~~r~~-~-~~~~L~~~L~---d~d~~Vra~A~raLG~l~~~~a~~~L~~ 185 (410)
T TIGR02270 120 PW-LEPLLAA--------SEPPGRAIGLAALGAHRH-D-PGPALEAALT---HEDALVRAAALRALGELPRRLSESTLRL 185 (410)
T ss_pred HH-HHHHhcC--------CChHHHHHHHHHHHhhcc-C-hHHHHHHHhc---CCCHHHHHHHHHHHHhhccccchHHHHH
Confidence 44 4444433 343444555666665442 2 2333333333 4566677777888888777655555554
Q ss_pred HcccCChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCChhhHHHHHHhcccCCchhchHHHHHHHHHHhCCCccHHH
Q 044786 177 QLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYV 256 (340)
Q Consensus 177 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (340)
-....|..+-..-+.+....|. .+|...+...... |+......+...+...|.. + +...+..+.+. +. +
T Consensus 186 al~d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~---~g~~~~~~l~~~lal~~~~-~-a~~~L~~ll~d---~~--v 254 (410)
T TIGR02270 186 YLRDSDPEVRFAALEAGLLAGS-RLAWGVCRRFQVL---EGGPHRQRLLVLLAVAGGP-D-AQAWLRELLQA---AA--T 254 (410)
T ss_pred HHcCCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHhc---cCccHHHHHHHHHHhCCch-h-HHHHHHHHhcC---hh--h
Confidence 4556677777777888888888 6777766664432 3333333333333333432 3 33333222222 22 4
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhhc
Q 044786 257 QCGLVDMYGKCRLLRDAERVFELIVD 282 (340)
Q Consensus 257 ~~~li~~~~~~~~~~~A~~~~~~~~~ 282 (340)
-...+.++.+.|+...+.-+.+.+.+
T Consensus 255 r~~a~~AlG~lg~p~av~~L~~~l~d 280 (410)
T TIGR02270 255 RREALRAVGLVGDVEAAPWCLEAMRE 280 (410)
T ss_pred HHHHHHHHHHcCCcchHHHHHHHhcC
Confidence 45677778888888877777777753
No 442
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=43.60 E-value=74 Score=22.09 Aligned_cols=50 Identities=16% Similarity=0.201 Sum_probs=37.6
Q ss_pred HHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhH
Q 044786 14 TCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDT 64 (340)
Q Consensus 14 ~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~ 64 (340)
..++......+..-.|.++++.+.+. +...+..|.-.-+..+.+.|-+..
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~-~~~is~~TVYR~L~~L~e~Gli~~ 60 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKK-GPRISLATVYRTLDLLEEAGLIRK 60 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHT-TTT--HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhc-cCCcCHHHHHHHHHHHHHCCeEEE
Confidence 45677777777789999999999988 878888877777788888776544
No 443
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=43.23 E-value=1.8e+02 Score=23.64 Aligned_cols=88 Identities=13% Similarity=0.025 Sum_probs=57.5
Q ss_pred HHHHhcCChhHHHHHHhhcC----------cCCccc-----------HHHHHHHHHcccChhHHHHHHHHHHHhhcCCcc
Q 044786 54 LMHVSCGQLDTARQLFDEMP----------LRDFNS-----------WAVMIVGYVDVADYQECITLFAEMMKRKKGHML 112 (340)
Q Consensus 54 ~~~~~~~~~~~a~~~~~~~~----------~~~~~~-----------~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 112 (340)
+-+.+.|++.+|...+.+.. +|...- +-..-.++...|++-++++.-.+++...
T Consensus 186 N~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~----- 260 (329)
T KOG0545|consen 186 NRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHH----- 260 (329)
T ss_pred hhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcC-----
Confidence 34566788888777766543 332222 2333345566788888888888888773
Q ss_pred ccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcC
Q 044786 113 LVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLG 147 (340)
Q Consensus 113 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 147 (340)
+-+...|..=.++.+..-+.++|.+=|...++..
T Consensus 261 -~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 261 -PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred -CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 4556677777777777777777777777776664
No 444
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=42.91 E-value=1.4e+02 Score=24.11 Aligned_cols=57 Identities=14% Similarity=0.017 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHcccC---------ChhhHHHHHHHHhccCchhHHHHHHHHHh
Q 044786 154 LTGSLINFYGKFRCLEDADFVFSQLKRH---------NTVVWTAKIVNNCREGHFHQVFNDFKEMG 210 (340)
Q Consensus 154 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 210 (340)
..-.+...|.+.|++++|.++|+.+... ...+...+..++.+.|+.+..+.+--+|.
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 3345677788888888888888887421 23345566777778888888777655543
No 445
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=42.60 E-value=33 Score=17.54 Aligned_cols=20 Identities=20% Similarity=0.546 Sum_probs=10.1
Q ss_pred HHHHHHHHHHhhc-CCcHHHH
Q 044786 270 LRDAERVFELIVD-KKNIASW 289 (340)
Q Consensus 270 ~~~A~~~~~~~~~-~~~~~~~ 289 (340)
++.|..+|++... .|++.+|
T Consensus 3 ~dRAR~IyeR~v~~hp~~k~W 23 (32)
T PF02184_consen 3 FDRARSIYERFVLVHPEVKNW 23 (32)
T ss_pred HHHHHHHHHHHHHhCCCchHH
Confidence 4555555555543 3444444
No 446
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=42.36 E-value=3.6e+02 Score=26.90 Aligned_cols=127 Identities=12% Similarity=-0.033 Sum_probs=54.8
Q ss_pred ccCChhhHHHHHHHHhccCchhH-HHHHHHHHhhcccCCChhhHHHHHHhcccCCchhchHHHHHHHHHHhCCCccHHHH
Q 044786 179 KRHNTVVWTAKIVNNCREGHFHQ-VFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQ 257 (340)
Q Consensus 179 ~~~~~~~~~~li~~~~~~~~~~~-a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (340)
..++...-.....++...+..+. +...+..+.. .+|...-...+.++...+........+... .+ .++..+-
T Consensus 752 ~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~a-L~---d~d~~VR 824 (897)
T PRK13800 752 TDENREVRIAVAKGLATLGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAA-LR---ASAWQVR 824 (897)
T ss_pred cCCCHHHHHHHHHHHHHhccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHH-hc---CCChHHH
Confidence 33444444444445544443322 2333333332 234444455555555555432211112221 11 2344444
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhhcCCcHHHHHHHHHHHHHcCchHHHHHHHHHHH
Q 044786 258 CGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMK 313 (340)
Q Consensus 258 ~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 313 (340)
...+.++.+.+.. ++...+..+...++...-...+.++.+.+....+...+....
T Consensus 825 ~~Aa~aL~~l~~~-~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al 879 (897)
T PRK13800 825 QGAARALAGAAAD-VAVPALVEALTDPHLDVRKAAVLALTRWPGDPAARDALTTAL 879 (897)
T ss_pred HHHHHHHHhcccc-chHHHHHHHhcCCCHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 4455555555442 344444444445555555555555555432334444444443
No 447
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=41.94 E-value=3.1e+02 Score=25.94 Aligned_cols=32 Identities=6% Similarity=-0.002 Sum_probs=21.7
Q ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHcCCccch
Q 044786 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQE 321 (340)
Q Consensus 289 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 321 (340)
...++.++. .|+...+++++++|...|..|..
T Consensus 254 i~~LldaL~-~~d~~~al~~l~~l~~~G~~~~~ 285 (618)
T PRK14951 254 VFRLIDALA-QGDGRTVVETADELRLNGLSAAS 285 (618)
T ss_pred HHHHHHHHH-cCCHHHHHHHHHHHHHcCCCHHH
Confidence 334444444 47788888888888888876543
No 448
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=41.71 E-value=2.9e+02 Score=25.57 Aligned_cols=326 Identities=10% Similarity=0.016 Sum_probs=176.6
Q ss_pred CCCCCcchhHHHHHHhh-hccchhhHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhcCChhHHHHHHhhcCcCCcccHHH
Q 044786 5 CLPITTDMYTCLIKECT-FQKDSAGAFELLNHIRKRVNIKP-TLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAV 82 (340)
Q Consensus 5 g~~~~~~~~~~li~~~~-~~~~~~~a~~~~~~m~~~~g~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 82 (340)
|+|.+...|...+..+. ..|+.+.....|+......|..- +...|...|.--..++++.....+++++.+-...-|+.
T Consensus 108 aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~ 187 (577)
T KOG1258|consen 108 AIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNR 187 (577)
T ss_pred hhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHH
Confidence 66777777776666654 46788889999999988756542 45678888888888999999999999988544444443
Q ss_pred HHHHHHc---c------cChhHHHHHHHHHHHh----------------hcCCccccch-HHHHHHHHHHhhhcc-----
Q 044786 83 MIVGYVD---V------ADYQECITLFAEMMKR----------------KKGHMLLVFP-AWIIVCVLKACVCTM----- 131 (340)
Q Consensus 83 li~~~~~---~------g~~~~a~~~~~~m~~~----------------~~~~~~~~~~-~~~~~~ll~~~~~~~----- 131 (340)
.-.-|.+ . ...+++.++-....+. ...+....+. ....+.+-..+....
T Consensus 188 ~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~ 267 (577)
T KOG1258|consen 188 HFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQK 267 (577)
T ss_pred HHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHh
Confidence 3333221 1 1222222222222210 0000000000 011111111111110
Q ss_pred --chhhHHHHHHHHHHcC-------CCCchhHHHHHHHHHHhhcCHHHHHHHHHHcccC---ChhhHHHHHHHHhccCch
Q 044786 132 --NMELGKQVHGLLFKLG-------SSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH---NTVVWTAKIVNNCREGHF 199 (340)
Q Consensus 132 --~~~~a~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~ 199 (340)
........++.-.+.. .+++..+|..-+..-.+.|+.+.+.-+|+...-| -...|-..+.-.-..|+.
T Consensus 268 s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~ 347 (577)
T KOG1258|consen 268 SEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDV 347 (577)
T ss_pred hHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCch
Confidence 1111111122222211 1234567888888888899999999999887655 223454445545555888
Q ss_pred hHHHHHHHHHhhcccCCChhhHHHHHHhcc-cCCchhchHHHHHHHHHHhCCCcc-HHHHHHHHHHHhccCCHHHHH---
Q 044786 200 HQVFNDFKEMGRERIKKNSYTFSSVLKACG-GVDDDGNCGRQMHANIVKIGLESD-EYVQCGLVDMYGKCRLLRDAE--- 274 (340)
Q Consensus 200 ~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~--- 274 (340)
+-|..++..-.+-.+ |+......+=..+. ..|++.. |..+++.+...- |+ ...-..-+...-+.|+.+.+.
T Consensus 348 ~~~~~~~~~~~~i~~-k~~~~i~L~~a~f~e~~~n~~~-A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~ 423 (577)
T KOG1258|consen 348 SLANNVLARACKIHV-KKTPIIHLLEARFEESNGNFDD-AKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKN 423 (577)
T ss_pred hHHHHHHHhhhhhcC-CCCcHHHHHHHHHHHhhccHHH-HHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHH
Confidence 877777766555332 22222222222332 3456655 777777776653 43 233333444556677777777
Q ss_pred HHHHHhhc-CCcHHHHHHHHHH-----HHHcCchHHHHHHHHHHHHcCCccchhHHHHHHHHhhhcC
Q 044786 275 RVFELIVD-KKNIASWNAMLVG-----YIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335 (340)
Q Consensus 275 ~~~~~~~~-~~~~~~~~~li~~-----~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~a~~~~g 335 (340)
+++..... +-+..+.+.+..- +.-.++.+.|..++.++.+. ..++...|..+++-+...+
T Consensus 424 ~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 424 ELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 44444332 2233333333332 33457788888888888654 4566667777776655544
No 449
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=41.27 E-value=1.7e+02 Score=27.57 Aligned_cols=91 Identities=13% Similarity=0.113 Sum_probs=62.4
Q ss_pred HHHHHHHhcCChhHHHHHHhhcCcC------CcccHHHHHHHHHcccChhH--HHHHHHHHHHhhcCCccccchHHHHHH
Q 044786 51 RLLLMHVSCGQLDTARQLFDEMPLR------DFNSWAVMIVGYVDVADYQE--CITLFAEMMKRKKGHMLLVFPAWIIVC 122 (340)
Q Consensus 51 ~li~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~--a~~~~~~m~~~~~~~~~~~~~~~~~~~ 122 (340)
+|+.+|...|++-.+.++++.+... =...+|..|+.+.+.|.++- ...-..+.++.. .+ ..|..||..
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a-~l---n~d~~t~al 108 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA-RL---NGDSLTYAL 108 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh-hc---CCcchHHHH
Confidence 7899999999999999999887733 23468999999999997653 333334444443 33 677888888
Q ss_pred HHHHhhhccchhhHHHHHHHHHH
Q 044786 123 VLKACVCTMNMELGKQVHGLLFK 145 (340)
Q Consensus 123 ll~~~~~~~~~~~a~~~~~~~~~ 145 (340)
++.+....-+-....-++.+...
T Consensus 109 l~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 109 LCQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHHhhcChHhHHhccHHHHHHHH
Confidence 88877665444444555554444
No 450
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=40.68 E-value=1.9e+02 Score=25.82 Aligned_cols=123 Identities=8% Similarity=-0.033 Sum_probs=68.0
Q ss_pred cchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHcccC-------------ChhhHHHHHHHHh---
Q 044786 131 MNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH-------------NTVVWTAKIVNNC--- 194 (340)
Q Consensus 131 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------------~~~~~~~li~~~~--- 194 (340)
+.+++-.++++.+.+.|- +| ....-|++|.+.+++++|...+++-.+. .+.+...++...-
T Consensus 68 ~~~~e~i~lL~~l~~~g~-ad--~lp~TIDSyTR~n~y~~A~~~l~~s~~~~~s~LNGfP~VnhGv~~~R~l~~~v~~Pv 144 (480)
T TIGR01503 68 ALLDEHIELLRTLQEEGG-AD--FLPSTIDAYTRQNRYDEAAVGIKESIKAGRSLLNGFPGVNHGVKGCRKVLEAVNLPL 144 (480)
T ss_pred CcHHHHHHHHHHHHHccC-CC--ccceeeecccccccHHHHHHHHHhhhhcCcccccCCCcccccHHHHHHHHHhCCCCe
Confidence 356777888888887762 22 3345578899999999999988876432 2233333443321
Q ss_pred --ccCchhHHHHHHHHHhhcccCCC---hhhHHHHHHhcccCCchhc------hHHHHHHHHHHhCCCccHHHHHHH
Q 044786 195 --REGHFHQVFNDFKEMGRERIKKN---SYTFSSVLKACGGVDDDGN------CGRQMHANIVKIGLESDEYVQCGL 260 (340)
Q Consensus 195 --~~~~~~~a~~~~~~m~~~~~~p~---~~t~~~ll~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l 260 (340)
++| ...+..+++-+...|+... ..+|+. -|++.-.+++ .+..+.....+.|++.|..+|..|
T Consensus 145 QvRHG-tpDarlL~e~~~a~G~~a~EGG~ISYnl---PYsK~vpLe~si~~WqyvdRL~g~y~e~gv~InrE~FGpL 217 (480)
T TIGR01503 145 QIRHG-TPDARLLAEIILAGGFTSFEGGGISYNI---PYAKNVTLEKSLEDWQYCDRLVGFYEEQGVHINREPFGPL 217 (480)
T ss_pred eccCC-CCcHHHHHHHHHHcCCCccCCCcceecc---ccCCCCCHHHHHHHHHHHHHHHHHHHhcCceeccccccCC
Confidence 122 2345666666666665432 223332 2333222222 133444444566777777776644
No 451
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=40.66 E-value=2.5e+02 Score=24.54 Aligned_cols=119 Identities=10% Similarity=-0.035 Sum_probs=0.0
Q ss_pred HHHhhhccchhhHHHHHHHHHhhcCCCCCHH--HHHHHHHHH--HhcCChhHHHHHHhhcCcCCcc------cHHHHHHH
Q 044786 17 IKECTFQKDSAGAFELLNHIRKRVNIKPTLL--FLNRLLLMH--VSCGQLDTARQLFDEMPLRDFN------SWAVMIVG 86 (340)
Q Consensus 17 i~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~--~~~~li~~~--~~~~~~~~a~~~~~~~~~~~~~------~~~~li~~ 86 (340)
+..+...+++..|.++++.+... ++++.. .+..+..+| ...-++++|.+.++........ .+..+...
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r--l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~~l~~~~~~ 215 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR--LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQEREGLKELVEV 215 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh--CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHH
Q ss_pred HHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhh---ccchhhHHHHHHHHHH
Q 044786 87 YVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVC---TMNMELGKQVHGLLFK 145 (340)
Q Consensus 87 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~ 145 (340)
.-....+......-..-.+. +.......|+....+ .|+++.|...+-++.+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~--------~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lE 269 (379)
T PF09670_consen 216 LKALESILSALEDKKQRQKK--------LYYALLADLLANAERRAAQGRYDDAVARLYRALE 269 (379)
T ss_pred HHHHHhhccchhhhhccccc--------cHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
No 452
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=40.31 E-value=1.2e+02 Score=20.85 Aligned_cols=81 Identities=10% Similarity=0.028 Sum_probs=53.2
Q ss_pred ccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCcCCcccHHHHHHHHHcccChhHHHHHHHH
Q 044786 23 QKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAE 102 (340)
Q Consensus 23 ~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 102 (340)
....++|..+.+++... +- -...+--+-+..+...|++++|+..=.....||..+|-+|- -.+.|..+++...+.+
T Consensus 19 ~HcH~EA~tIa~wL~~~-~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~--a~klGL~~~~e~~l~r 94 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQE-GE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALC--AWKLGLASALESRLTR 94 (116)
T ss_dssp TT-HHHHHHHHHHHHHT-TT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHH--HHHCT-HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhC-Cc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHH--HHhhccHHHHHHHHHH
Confidence 45788999999999987 43 12233334445678899999996655555577877776654 4578888888888888
Q ss_pred HHHhh
Q 044786 103 MMKRK 107 (340)
Q Consensus 103 m~~~~ 107 (340)
+-..+
T Consensus 95 la~~g 99 (116)
T PF09477_consen 95 LASSG 99 (116)
T ss_dssp HCT-S
T ss_pred HHhCC
Confidence 87664
No 453
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=39.79 E-value=89 Score=19.12 Aligned_cols=50 Identities=8% Similarity=-0.081 Sum_probs=32.8
Q ss_pred cchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 044786 114 VFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164 (340)
Q Consensus 114 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 164 (340)
.|+...++.++..+++-.-++++...+.+..+.|. .+..+|..-++.+++
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 56666777777777777777888887777777774 355555555555444
No 454
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=39.46 E-value=1.1e+02 Score=20.12 Aligned_cols=66 Identities=12% Similarity=-0.082 Sum_probs=35.6
Q ss_pred hccCCHHHHHHHHHHhhc----CC--c---HHHH--HHHHHHHHHcCchHHHHHHHHHHHHcCCc-cchhHHHHHHHH
Q 044786 265 GKCRLLRDAERVFELIVD----KK--N---IASW--NAMLVGYIRNGLYVEATKFLYLMKASGIQ-IQESLINDLRIA 330 (340)
Q Consensus 265 ~~~~~~~~A~~~~~~~~~----~~--~---~~~~--~~li~~~~~~~~~~~a~~~~~~m~~~g~~-~~~~t~~~ll~a 330 (340)
.+.|++..|.+-+.+.-+ .. . ...+ -.+.......|++++|+..+++....--+ -|..+....+..
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~ 86 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSW 86 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 356777777555544433 21 1 1122 22344566789999999888887554322 244444444433
No 455
>PRK09462 fur ferric uptake regulator; Provisional
Probab=38.68 E-value=86 Score=22.87 Aligned_cols=37 Identities=16% Similarity=0.244 Sum_probs=16.1
Q ss_pred HHHhCCCccHHHHHHHHHHHhcc-CCHHHHHHHHHHhhc
Q 044786 245 IVKIGLESDEYVQCGLVDMYGKC-RLLRDAERVFELIVD 282 (340)
Q Consensus 245 ~~~~~~~~~~~~~~~li~~~~~~-~~~~~A~~~~~~~~~ 282 (340)
+...|++++..-. .+++.+... +..-.|.++++.+..
T Consensus 8 l~~~glr~T~qR~-~Il~~l~~~~~~h~sa~eI~~~l~~ 45 (148)
T PRK09462 8 LKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLID 45 (148)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHh
Confidence 3444555544432 233333322 334455555555543
No 456
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=37.62 E-value=1.2e+02 Score=19.97 Aligned_cols=58 Identities=9% Similarity=0.021 Sum_probs=35.5
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHcccCChhhHHHHHHHHhccCc
Q 044786 137 KQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGH 198 (340)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~ 198 (340)
..++..+.+.|+-. ..-+. .......+.+++.++++.++.++..+|..+..++-..+.
T Consensus 23 ~~v~~~L~~~gvlt-~~~~~---~I~~~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~ 80 (90)
T cd08332 23 DELLIHLLQKDILT-DSMAE---SIMAKPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQ 80 (90)
T ss_pred HHHHHHHHHcCCCC-HHHHH---HHHcCCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcCh
Confidence 34556666666432 21111 222233566788888888888888888888888765444
No 457
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=37.17 E-value=1.5e+02 Score=21.05 Aligned_cols=94 Identities=13% Similarity=0.108 Sum_probs=52.6
Q ss_pred HHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhh-----------ccchhhHHHHHHHHHHcCC
Q 044786 80 WAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVC-----------TMNMELGKQVHGLLFKLGS 148 (340)
Q Consensus 80 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~-----------~~~~~~a~~~~~~~~~~~~ 148 (340)
+...++.+....--..++++..++.... .++....+..+.-|.+ .+...-.-.+++.+.+.++
T Consensus 21 ~~~yld~lv~~~~sl~s~EvVn~L~~~~------~~p~efl~~yI~~cI~~ce~~kd~~~q~R~VRlvcvfl~sLir~~i 94 (126)
T PF10155_consen 21 FKEYLDVLVSMDMSLHSMEVVNRLTTSF------SLPQEFLHMYISNCIKSCESIKDKYMQNRLVRLVCVFLQSLIRNKI 94 (126)
T ss_pred HHHHHHHHHcCCCchhHHHHHHHHHcCC------CCcHHHHHHHHHHHHHHHHhhcccccccchhhhHHHHHHHHHHcCC
Confidence 4445555555555555666666665542 2333333333333222 1223344455566777776
Q ss_pred CCchhHHHHHHHHHHhhcCHHHHHHHHHHcc
Q 044786 149 SRNISLTGSLINFYGKFRCLEDADFVFSQLK 179 (340)
Q Consensus 149 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 179 (340)
......+..+-..|.+..++.+|..+|+-+.
T Consensus 95 ~~~~~l~~evq~FClefs~i~Ea~~L~kllk 125 (126)
T PF10155_consen 95 IDVEDLFIEVQAFCLEFSRIKEASALFKLLK 125 (126)
T ss_pred CchHHHHhhHHHHHHHHccHHHHHHHHHHHh
Confidence 6556666666677777778888888887653
No 458
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=36.92 E-value=2.7e+02 Score=23.76 Aligned_cols=142 Identities=11% Similarity=0.059 Sum_probs=81.8
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCcC-----CcccHHHHHHHHHcccChhHHHHHHHHHHH
Q 044786 31 ELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLR-----DFNSWAVMIVGYVDVADYQECITLFAEMMK 105 (340)
Q Consensus 31 ~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 105 (340)
.+|+.+.+..+++.|...++.|...- ..++++-.+..++..+. -...+-....-|++.|+-+.|++.+.+..+
T Consensus 55 p~Ye~lce~~~i~~D~~~l~~m~~~n--eeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ 132 (393)
T KOG0687|consen 55 PLYEYLCESLVIKLDQDLLNSMKKAN--EEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYE 132 (393)
T ss_pred hHHHHHHhhcceeccHHHHHHHHHhh--HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 35555555547788888888777542 22333333333333322 122455666789999999999999888776
Q ss_pred hh--cCCccccchHHHHHHHHHHhh-hccchhhHHHHHHHHHHcCCCCch----hHHHHHHHHHHhhcCHHHHHHHHHHc
Q 044786 106 RK--KGHMLLVFPAWIIVCVLKACV-CTMNMELGKQVHGLLFKLGSSRNI----SLTGSLINFYGKFRCLEDADFVFSQL 178 (340)
Q Consensus 106 ~~--~~~~~~~~~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~ 178 (340)
.. .|. +.|...+..=+..+. ...-+.+-.+..+.+.+.|...+. .+|..+- +...+++.+|-.+|-+.
T Consensus 133 ktvs~g~---kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly--~msvR~Fk~Aa~Lfld~ 207 (393)
T KOG0687|consen 133 KTVSLGH---KIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLY--CMSVRNFKEAADLFLDS 207 (393)
T ss_pred HHhhccc---chhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHH--HHHHHhHHHHHHHHHHH
Confidence 63 233 667665544443332 222344444455556666655443 2444332 23446888888888775
Q ss_pred c
Q 044786 179 K 179 (340)
Q Consensus 179 ~ 179 (340)
.
T Consensus 208 v 208 (393)
T KOG0687|consen 208 V 208 (393)
T ss_pred c
Confidence 5
No 459
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=36.79 E-value=1.4e+02 Score=20.65 Aligned_cols=25 Identities=28% Similarity=0.321 Sum_probs=15.6
Q ss_pred HHHHHhhhccchhhHHHHHHHHHhh
Q 044786 15 CLIKECTFQKDSAGAFELLNHIRKR 39 (340)
Q Consensus 15 ~li~~~~~~~~~~~a~~~~~~m~~~ 39 (340)
++|+.+.+....++|+++++.|.++
T Consensus 66 tViD~lrRC~T~EEALEVInylek~ 90 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKR 90 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHh
Confidence 4555555666666666666666666
No 460
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=36.76 E-value=2e+02 Score=22.36 Aligned_cols=18 Identities=17% Similarity=0.272 Sum_probs=14.2
Q ss_pred hccCCHHHHHHHHHHhhc
Q 044786 265 GKCRLLRDAERVFELIVD 282 (340)
Q Consensus 265 ~~~~~~~~A~~~~~~~~~ 282 (340)
.+.|+++.|+++++-|..
T Consensus 132 l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 132 LRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 356889999999888864
No 461
>TIGR01529 argR_whole arginine repressor. This model includes most members of the arginine-responsive transcriptional regulator family ArgR. This hexameric protein binds DNA at its amino end to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbor-joining tree, some of these paralogous sequences show long branches and differ significantly in an otherwise well-conserved C-terminal region motif GT[VIL][AC]GDDT. These paralogs are excluded from the seed and score in the gray zone of this model, between trusted and noise cutoffs.
Probab=36.19 E-value=82 Score=23.03 Aligned_cols=40 Identities=15% Similarity=0.198 Sum_probs=29.8
Q ss_pred HHHHHHHcCchHHHHHHHHHHHHcCCccchhHHHHHHHHh
Q 044786 292 MLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIAC 331 (340)
Q Consensus 292 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~a~ 331 (340)
+|..+.+.+.+..+.++++.+.+.|+..+..|....|.-.
T Consensus 6 ~i~~Li~~~~i~tqeeL~~~L~~~G~~vsqaTIsRdL~el 45 (146)
T TIGR01529 6 RIKEIITEEKISTQEELVALLKAEGIEVTQATVSRDLREL 45 (146)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHHHc
Confidence 4556667777778888888888888888888877766543
No 462
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=36.15 E-value=1.6e+02 Score=20.96 Aligned_cols=58 Identities=12% Similarity=0.012 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhhcCCcHHHHH-HHHHHHHHcCchHHHHHHHHHH
Q 044786 255 YVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWN-AMLVGYIRNGLYVEATKFLYLM 312 (340)
Q Consensus 255 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~a~~~~~~m 312 (340)
.+..++..++.-.|..+.|.++++..+=.++-...| -++..|.+..+-++..++-++.
T Consensus 67 scvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~~ 125 (127)
T PF04034_consen 67 SCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNEY 125 (127)
T ss_pred cHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 345667777788899999999988875334444444 4788899888888877776554
No 463
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=36.14 E-value=3.8e+02 Score=25.34 Aligned_cols=30 Identities=7% Similarity=0.025 Sum_probs=21.8
Q ss_pred HHHHHHHHcCchHHHHHHHHHHHHcCCccch
Q 044786 291 AMLVGYIRNGLYVEATKFLYLMKASGIQIQE 321 (340)
Q Consensus 291 ~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 321 (340)
.++.+. ..++..+|+.+++++...|..|..
T Consensus 253 ~L~dai-~~~~~~~al~ll~~Ll~~g~~~~~ 282 (614)
T PRK14971 253 RLTDAL-LAGKVSDSLLLFDEILNKGFDGSH 282 (614)
T ss_pred HHHHHH-HcCCHHHHHHHHHHHHHcCCCHHH
Confidence 344444 456899999999999988877653
No 464
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=35.81 E-value=2.8e+02 Score=23.73 Aligned_cols=90 Identities=16% Similarity=0.113 Sum_probs=53.8
Q ss_pred HHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHH--HHHHHhhhccchhhHHHHHHHHHH-----cCCCCch
Q 044786 80 WAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIV--CVLKACVCTMNMELGKQVHGLLFK-----LGSSRNI 152 (340)
Q Consensus 80 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~ 152 (340)
...++...-+.++.++|++.++++.+.-... -.|+...|. ...+.+...|+.+++.+++++..+ .+++|++
T Consensus 78 vei~l~~~~~~~D~~~al~~Le~i~~~~~~~--~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~V 155 (380)
T KOG2908|consen 78 VEILLVVSEQISDKDEALEFLEKIIEKLKEY--KEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNV 155 (380)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhh
Confidence 3445555556678888888888887652111 145555544 344555667888888888887776 5666644
Q ss_pred h-HHHHHHHHHH-hhcCHHHH
Q 044786 153 S-LTGSLINFYG-KFRCLEDA 171 (340)
Q Consensus 153 ~-~~~~l~~~~~-~~~~~~~a 171 (340)
. .|..+-.-|. +.|++...
T Consensus 156 h~~fY~lssqYyk~~~d~a~y 176 (380)
T KOG2908|consen 156 HSSFYSLSSQYYKKIGDFASY 176 (380)
T ss_pred hhhHHHHHHHHHHHHHhHHHH
Confidence 3 3444444333 34555443
No 465
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=35.30 E-value=1.6e+02 Score=20.80 Aligned_cols=43 Identities=14% Similarity=0.195 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHcCCCC-chhHHHHHHHHHHhhcCHHHHHHHHHH
Q 044786 135 LGKQVHGLLFKLGSSR-NISLTGSLINFYGKFRCLEDADFVFSQ 177 (340)
Q Consensus 135 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 177 (340)
.+.++|+.|...|+-. ....|..-...+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 7888888888887654 445677777888888888888888864
No 466
>TIGR01914 cas_Csa4 CRISPR-associated protein, Csa4 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein that tends to be found near CRISPR repeats. The species range for this species, so far, is exclusively archaeal. It is found so far in only four different species, and includes two tandem genes in Pyrococcus furiosus DSM 3638. This subfamily is found in a CRISPR/Cas locus we designate APERN, so the family is designated Csa4, for CRISPR/Cas Subtype Protein 4.
Probab=35.21 E-value=2.1e+02 Score=24.30 Aligned_cols=27 Identities=15% Similarity=0.066 Sum_probs=13.5
Q ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHH
Q 044786 238 GRQMHANIVKIGLESDEYVQCGLVDMY 264 (340)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~li~~~ 264 (340)
.-..++.+.+.|+.+++...+.|.+.+
T Consensus 325 ~Ysa~R~~k~~g~~~~~~~v~~lae~l 351 (354)
T TIGR01914 325 FYTALRELKKSGVRYDPEQVDALAEIL 351 (354)
T ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHH
Confidence 344444455555555555555554443
No 467
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=34.89 E-value=1.7e+02 Score=23.14 Aligned_cols=30 Identities=7% Similarity=-0.067 Sum_probs=18.5
Q ss_pred HHHHHHHHhhhccchhhHHHHHHHHHHcCC
Q 044786 119 IIVCVLKACVCTMNMELGKQVHGLLFKLGS 148 (340)
Q Consensus 119 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 148 (340)
....+.....+.|+.++|.+.|..+...+-
T Consensus 167 l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 167 LLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 344455556666777777777776666543
No 468
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=34.78 E-value=2.5e+02 Score=22.76 Aligned_cols=78 Identities=4% Similarity=-0.043 Sum_probs=44.2
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHH----------------cccCChhhHHHHHHHHhccCchhH
Q 044786 138 QVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQ----------------LKRHNTVVWTAKIVNNCREGHFHQ 201 (340)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~----------------~~~~~~~~~~~li~~~~~~~~~~~ 201 (340)
++.+-....++.-+..-...++ +...|+...|...+.. ..+|.+.....++..| ..+++++
T Consensus 180 Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~-~~~~~~~ 256 (333)
T KOG0991|consen 180 RLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQAC-LKRNIDE 256 (333)
T ss_pred HHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHH-HhccHHH
Confidence 3333334444443333333333 3455666666655443 3344444555555544 4678888
Q ss_pred HHHHHHHHhhcccCCCh
Q 044786 202 VFNDFKEMGRERIKKNS 218 (340)
Q Consensus 202 a~~~~~~m~~~~~~p~~ 218 (340)
|.+++.++.+.|..|..
T Consensus 257 A~~il~~lw~lgysp~D 273 (333)
T KOG0991|consen 257 ALKILAELWKLGYSPED 273 (333)
T ss_pred HHHHHHHHHHcCCCHHH
Confidence 99999888888887753
No 469
>PRK11619 lytic murein transglycosylase; Provisional
Probab=34.28 E-value=4.2e+02 Score=25.26 Aligned_cols=115 Identities=11% Similarity=0.014 Sum_probs=61.3
Q ss_pred cCchhHHHHHHHHHhhcc-cCCCh--hhHHHHHHhcccCCchhchHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCHHH
Q 044786 196 EGHFHQVFNDFKEMGRER-IKKNS--YTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRD 272 (340)
Q Consensus 196 ~~~~~~a~~~~~~m~~~~-~~p~~--~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 272 (340)
..+.+.|..++....... ..+.. .....+.......+...+ +...+...... ..+......-+..-.+.++++.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~-a~~w~~~~~~~--~~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDE-QAKWRDDVIMR--SQSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHH-HHHHHHhcccc--cCCcHHHHHHHHHHHHccCHHH
Confidence 445677888887764432 22221 122222222222210112 33333322211 1244445555666668899999
Q ss_pred HHHHHHHhhcC-CcHHHHH-HHHHHHHHcCchHHHHHHHHHHH
Q 044786 273 AERVFELIVDK-KNIASWN-AMLVGYIRNGLYVEATKFLYLMK 313 (340)
Q Consensus 273 A~~~~~~~~~~-~~~~~~~-~li~~~~~~~~~~~a~~~~~~m~ 313 (340)
+...+..|... .+...|. =+.+++...|+.++|...|++..
T Consensus 331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 88888888542 1211221 24566667899999999999873
No 470
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=34.03 E-value=4.9e+02 Score=26.01 Aligned_cols=224 Identities=8% Similarity=-0.046 Sum_probs=120.8
Q ss_pred HHHHHhhcCcCCcccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHH
Q 044786 65 ARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLF 144 (340)
Q Consensus 65 a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 144 (340)
...+.+.+..+|+.+-...+..+.+.+.. ++...+.+.+.. ++..+-...+.++.+.+........+....
T Consensus 623 ~~~L~~~L~D~d~~VR~~Av~~L~~~~~~-~~~~~L~~aL~D--------~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L 693 (897)
T PRK13800 623 VAELAPYLADPDPGVRRTAVAVLTETTPP-GFGPALVAALGD--------GAAAVRRAAAEGLRELVEVLPPAPALRDHL 693 (897)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhhhcch-hHHHHHHHHHcC--------CCHHHHHHHHHHHHHHHhccCchHHHHHHh
Confidence 34555556677777777777777777653 344555555533 344444455555544432212222333333
Q ss_pred HcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHcccCChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCChhhHHHH
Q 044786 145 KLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224 (340)
Q Consensus 145 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~l 224 (340)
+. +|..+-...+.++...+.- ....+...+..+|...-...+.++.+.+..+. + ..... .++...-...
T Consensus 694 ~~---~d~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~---l-~~~l~---D~~~~VR~~a 762 (897)
T PRK13800 694 GS---PDPVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES---V-AGAAT---DENREVRIAV 762 (897)
T ss_pred cC---CCHHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH---H-HHHhc---CCCHHHHHHH
Confidence 32 4555555666666654321 12345556667777666667777776654432 2 22222 3555555566
Q ss_pred HHhcccCCchhchHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhcCCcHHHHHHHHHHHHHcCchHH
Q 044786 225 LKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVE 304 (340)
Q Consensus 225 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 304 (340)
..++...+.....+...+..+.+ .++..+-...+.++.+.|..+.+...+......++...-...+.++.+.+.. +
T Consensus 763 a~aL~~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~-~ 838 (897)
T PRK13800 763 AKGLATLGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAAD-V 838 (897)
T ss_pred HHHHHHhccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhcccc-c
Confidence 66666666542212222222222 3567777788888888887665544454455556655555666777766643 3
Q ss_pred HHHHHHHH
Q 044786 305 ATKFLYLM 312 (340)
Q Consensus 305 a~~~~~~m 312 (340)
+...+..+
T Consensus 839 a~~~L~~~ 846 (897)
T PRK13800 839 AVPALVEA 846 (897)
T ss_pred hHHHHHHH
Confidence 44444444
No 471
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=33.50 E-value=3e+02 Score=23.43 Aligned_cols=19 Identities=32% Similarity=0.240 Sum_probs=9.6
Q ss_pred CchHHHHHHHHHHHHcCCc
Q 044786 300 GLYVEATKFLYLMKASGIQ 318 (340)
Q Consensus 300 ~~~~~a~~~~~~m~~~g~~ 318 (340)
|+..+|..+++++...|..
T Consensus 257 ~~~~~a~~~~~~l~~~~~~ 275 (355)
T TIGR02397 257 KDTAEALKILDEILESGVD 275 (355)
T ss_pred CCHHHHHHHHHHHHHcCCC
Confidence 4455555555555544443
No 472
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=32.37 E-value=1.9e+02 Score=20.62 Aligned_cols=80 Identities=16% Similarity=0.164 Sum_probs=51.9
Q ss_pred cchhhHHHHHHHHHhhc---------------CCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCcC-CcccH-HHHHHH
Q 044786 24 KDSAGAFELLNHIRKRV---------------NIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLR-DFNSW-AVMIVG 86 (340)
Q Consensus 24 ~~~~~a~~~~~~m~~~~---------------g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~-~~li~~ 86 (340)
..|.+..++|..+.... |-+--..+.-++..++.-.|..++|.++++.+.-. +-... ..++..
T Consensus 29 CSW~~l~~~f~k~~~~~~R~LP~LvAaNPVNYGkP~kLscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~ 108 (127)
T PF04034_consen 29 CSWNRLDEVFKKLRSRNHRLLPYLVAANPVNYGKPCKLSCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEA 108 (127)
T ss_pred CcHHHHHHHHHhcCCCCCccCchhhccCCcccCCcccccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 35666666666666431 11112456677788888889999999998888733 22223 347888
Q ss_pred HHcccChhHHHHHHHHH
Q 044786 87 YVDVADYQECITLFAEM 103 (340)
Q Consensus 87 ~~~~g~~~~a~~~~~~m 103 (340)
|.+..+.++..++-++.
T Consensus 109 Y~~~~~~~ev~~~q~~~ 125 (127)
T PF04034_consen 109 YAKCKTSEEVIEIQNEY 125 (127)
T ss_pred HHcCCCHHHHHHHHHHH
Confidence 88888777776665543
No 473
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=31.90 E-value=5.4e+02 Score=25.87 Aligned_cols=200 Identities=8% Similarity=0.025 Sum_probs=0.0
Q ss_pred HHHHHHHhcCChhHHHHHHhhcC-------cCCcccHHHHHHHHHcc-cChhHHHHHHHHHHHhhcCCccccchHHHHHH
Q 044786 51 RLLLMHVSCGQLDTARQLFDEMP-------LRDFNSWAVMIVGYVDV-ADYQECITLFAEMMKRKKGHMLLVFPAWIIVC 122 (340)
Q Consensus 51 ~li~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ 122 (340)
..+.-+...+++.+|..+.++-+ ..|+..|-.=+..+.+. ++.+---.++..+.+. ..+...|..
T Consensus 699 ~~ir~~Ld~~~Y~~Af~~~RkhRIdlNll~Dh~p~~Fl~ni~~Fv~qi~~~~~lnLFls~L~~E-------Dvt~tmY~~ 771 (928)
T PF04762_consen 699 AGIRKLLDAKDYKEAFELCRKHRIDLNLLYDHNPEQFLENIELFVEQIKDVDYLNLFLSSLRNE-------DVTKTMYKD 771 (928)
T ss_pred HHHHHHHhhccHHHHHHHHHHhccccceEEECCHHHHHHHHHHHHHhcCCHHHHHHHHHhcccc-------ccccccccc
Q ss_pred HH------------HHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhc--CHHHHHHHHHHcccCChhhHHH
Q 044786 123 VL------------KACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR--CLEDADFVFSQLKRHNTVVWTA 188 (340)
Q Consensus 123 ll------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~ 188 (340)
.. ......+.+...-+.+...... ..-...-...++.+|.+.+ ++++|+....++.+.+...-..
T Consensus 772 ~~~~~~~~~~~~~~~~~~~~~KVn~ICdair~~l~~-~~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~~~~~ae~ 850 (928)
T PF04762_consen 772 TYPPSSEAQPNSNSSTASSESKVNKICDAIRKALEK-PKDKDKYLQPILTAYVKKSPPDLEEALQLIKELREEDPESAEE 850 (928)
T ss_pred ccccccccccccccCCCccccHHHHHHHHHHHHhcc-cccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhcChHHHHH
Q ss_pred HHHHHhccCc----hhHHHHHHHH----HhhcccCCChhhHHHHHHhcccCCchhchHHHHHHHHHHhCCCccHHHHHHH
Q 044786 189 KIVNNCREGH----FHQVFNDFKE----MGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGL 260 (340)
Q Consensus 189 li~~~~~~~~----~~~a~~~~~~----m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 260 (340)
.++-.+-.-+ ++.|+.+|+- |+...-.-|+.-|.-+++.+.+.....+ +..+.-...-|..-
T Consensus 851 alkyl~fLvDvn~Ly~~ALG~YDl~Lal~VAq~SQkDPKEYLPfL~~L~~l~~~~r----------ry~ID~hLkRy~kA 920 (928)
T PF04762_consen 851 ALKYLCFLVDVNKLYDVALGTYDLELALMVAQQSQKDPKEYLPFLQELQKLPPLYR----------RYKIDDHLKRYEKA 920 (928)
T ss_pred HHhHheeeccHHHHHHHHhhhcCHHHHHHHHHHhccChHHHHHHHHHHHhCChhhe----------eeeHhhhhCCHHHH
Q ss_pred HHHHhccC
Q 044786 261 VDMYGKCR 268 (340)
Q Consensus 261 i~~~~~~~ 268 (340)
+.-+.++|
T Consensus 921 L~~L~~~G 928 (928)
T PF04762_consen 921 LRHLSACG 928 (928)
T ss_pred HHHHHhhC
No 474
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=31.82 E-value=4.1e+02 Score=24.41 Aligned_cols=31 Identities=6% Similarity=-0.001 Sum_probs=21.6
Q ss_pred HHHHHHHHcCchHHHHHHHHHHHHcCCccchh
Q 044786 291 AMLVGYIRNGLYVEATKFLYLMKASGIQIQES 322 (340)
Q Consensus 291 ~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~ 322 (340)
.|+.+. ..|+.++|+.+++++...|..|...
T Consensus 263 ~L~~ai-~~~d~~~Al~~l~~L~~~g~~~~~~ 293 (507)
T PRK06645 263 EFVEYI-IHRETEKAINLINKLYGSSVNLEIF 293 (507)
T ss_pred HHHHHH-HcCCHHHHHHHHHHHHHcCCCHHHH
Confidence 344443 3478888888888888888776643
No 475
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. In eukaryotes, transcription initiation of all protein encoding genes involves the polymerase II system. This sytem is modulated by both general and specific transcription factors. The general factors (which include TFIIA, TFIIB, TFIID, TFIIE, TFIIF, TFIIG and TFIIH) operate through common promoter elements, such as the TATA box. Transcription factor IIB (TFIIB) is of central importance in transcription of class II genes. It associates with TFIID-TFIIA bound to DNA (the DA complex) to form a ternary TFIID-IIA-IBB (DAB) complex, which is recognised by RNA polymerase II [, ]. TFIIB comprises ~315-340 residues and contains an imperfect C-terminal repeat of a 75-residue domain that may contribute to the symmetry of the folded protein. The basal archaeal transcription machinery resembles that of the eukaryotic polymerase II system and includes a homologue of TFIIB []. This entry represents a cyclin-like domain which is found repeated in the C-terminal region of a variety of eukaryotic TFIIB's and their archaeal counterparts. These domains individually form the typical cyclin fold, and in the transcription complex they straddle the C-terminal region of the TATA-binding protein - an interaction essential for the formation of the transcription initiation complex [, ].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2PHG_A 1C9B_Q 1TFB_A 1VOL_A 3K7A_M 1AIS_B 1D3U_B.
Probab=31.66 E-value=1.3e+02 Score=18.50 Aligned_cols=35 Identities=11% Similarity=0.093 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHcC----CccchhHHHHHHHHhhhcCcc
Q 044786 303 VEATKFLYLMKASG----IQIQESLINDLRIACSSISAS 337 (340)
Q Consensus 303 ~~a~~~~~~m~~~g----~~~~~~t~~~ll~a~~~~g~~ 337 (340)
+.|.++++.+.+.| -.|....-..+.-+|...|.+
T Consensus 16 ~~A~~i~~~~~~~~~~~Gr~~~~iaAA~iY~acr~~~~~ 54 (71)
T PF00382_consen 16 ERAKEIYKKAQERGLLKGRSPESIAAACIYLACRLNGVP 54 (71)
T ss_dssp HHHHHHHHHHHHTTTSTTS-HHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHcCCcccCCHHHHHHHHHHHHHHHcCCC
Confidence 45666666665553 345556666666666665544
No 476
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=31.37 E-value=1.6e+02 Score=19.65 Aligned_cols=48 Identities=19% Similarity=0.102 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhhc-CCcHHHHHHHHHHHHHcCchHHHHHHHHHHHHcCC
Q 044786 270 LRDAERVFELIVD-KKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGI 317 (340)
Q Consensus 270 ~~~A~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 317 (340)
-+...+++..... .+...|++.|+.++.+.|.-.-|.++-+.+...|.
T Consensus 47 ~eq~~qmL~~W~~~~G~~At~~~L~~aL~~~~~~~~Ae~I~~~l~~~~~ 95 (96)
T cd08315 47 REQLYQMLLTWVNKTGRKASVNTLLDALEAIGLRLAKESIQDELISSGK 95 (96)
T ss_pred HHHHHHHHHHHHHhhCCCcHHHHHHHHHHHcccccHHHHHHHHHHHcCC
Confidence 4555555555554 35566788888888888888888887777776663
No 477
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=30.41 E-value=1.8e+02 Score=19.80 Aligned_cols=13 Identities=8% Similarity=0.192 Sum_probs=6.1
Q ss_pred HHHhcccCCchhc
Q 044786 224 VLKACGGVDDDGN 236 (340)
Q Consensus 224 ll~~~~~~~~~~~ 236 (340)
++..|...++..+
T Consensus 8 ~l~ey~~~~D~~e 20 (113)
T smart00544 8 IIEEYLSSGDTDE 20 (113)
T ss_pred HHHHHHHcCCHHH
Confidence 3444444455444
No 478
>PRK11619 lytic murein transglycosylase; Provisional
Probab=30.33 E-value=4.9e+02 Score=24.83 Aligned_cols=116 Identities=8% Similarity=-0.020 Sum_probs=75.7
Q ss_pred ccchhhHHHHHHHHHhhcCCCCCH--HHHHHHHHHHHhcCChhHHHHHHhhcCcC--CcccHHHHHHHHHcccChhHHHH
Q 044786 23 QKDSAGAFELLNHIRKRVNIKPTL--LFLNRLLLMHVSCGQLDTARQLFDEMPLR--DFNSWAVMIVGYVDVADYQECIT 98 (340)
Q Consensus 23 ~~~~~~a~~~~~~m~~~~g~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~ 98 (340)
..+.+.|..++.......++.+.. .++..+....+..+..++|...++....+ |......-++...+.++++.+..
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~ 333 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNT 333 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHH
Confidence 346688888888875552343332 23334433333433366777777776533 55556666666678889999888
Q ss_pred HHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHH
Q 044786 99 LFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLF 144 (340)
Q Consensus 99 ~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 144 (340)
.+..|.... .-...-..-+.++....|+.++|..+|+.+.
T Consensus 334 ~i~~L~~~~------~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 334 WLARLPMEA------KEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHhcCHhh------ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 888886653 3344556667777777899999998888763
No 479
>PF14162 YozD: YozD-like protein
Probab=30.17 E-value=1.1e+02 Score=17.47 Aligned_cols=29 Identities=21% Similarity=0.101 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHcCCccch--------hHHHHHHHHhh
Q 044786 304 EATKFLYLMKASGIQIQE--------SLINDLRIACS 332 (340)
Q Consensus 304 ~a~~~~~~m~~~g~~~~~--------~t~~~ll~a~~ 332 (340)
-|.-.|.++..+|..|+. .||..|+.-|-
T Consensus 13 IAefFy~eL~kRGyvP~e~El~eiADItFeYll~K~i 49 (57)
T PF14162_consen 13 IAEFFYHELVKRGYVPTEEELEEIADITFEYLLEKCI 49 (57)
T ss_pred HHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 355678889999988875 57777777664
No 480
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=30.01 E-value=1.2e+02 Score=18.90 Aligned_cols=39 Identities=8% Similarity=-0.054 Sum_probs=23.9
Q ss_pred hccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcC
Q 044786 129 CTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167 (340)
Q Consensus 129 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 167 (340)
..++.+.+.+++++..+.|..|.......+..+..+.|+
T Consensus 13 ~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG~ 51 (79)
T PF02607_consen 13 LAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIGE 51 (79)
T ss_dssp HTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 345777777777777777766666555555555544443
No 481
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=29.67 E-value=2.7e+02 Score=21.70 Aligned_cols=28 Identities=18% Similarity=0.314 Sum_probs=21.5
Q ss_pred hhHHHHHHhhhccchhhHHHHHHHHHhh
Q 044786 12 MYTCLIKECTFQKDSAGAFELLNHIRKR 39 (340)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~m~~~ 39 (340)
..+.+++.|...||++.|-+.|.-+.+.
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~ 70 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRC 70 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcC
Confidence 3556777788888888888888888766
No 482
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=29.09 E-value=2.8e+02 Score=21.62 Aligned_cols=172 Identities=12% Similarity=0.060 Sum_probs=95.8
Q ss_pred cchHHHHHHHHHHhhhc----cchhhHHHHHHHHHHcCCCCchh----HHHHHHHHHHhhcCHHHHHHHHHHcccCChhh
Q 044786 114 VFPAWIIVCVLKACVCT----MNMELGKQVHGLLFKLGSSRNIS----LTGSLINFYGKFRCLEDADFVFSQLKRHNTVV 185 (340)
Q Consensus 114 ~~~~~~~~~ll~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 185 (340)
.++...++-+++.+.+. +.++.+..+-.+....++.++.. ....=++.|-+.|||.+.-.+|-...
T Consensus 5 ~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv~------ 78 (233)
T PF14669_consen 5 VLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINVK------ 78 (233)
T ss_pred cCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhHH------
Confidence 56666677666666554 34555555555555566554433 22333456666777776666554332
Q ss_pred HHHHHHHHhccCchhH-----HHHHHHHHhhcccCCChhhHHHHHHhcccCCchhchHHHHHHHHHHhCCCccHHHHHHH
Q 044786 186 WTAKIVNNCREGHFHQ-----VFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGL 260 (340)
Q Consensus 186 ~~~li~~~~~~~~~~~-----a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 260 (340)
.++-+.+++++ |..+.++-++ +|. .-|..+..+-++.-..+++-+.++..+ | -++
T Consensus 79 -----~gce~~~dlq~~~~~va~~Ltkd~Kd---k~~-vPFceFAetV~k~~q~~e~dK~~LGRi---G--------iS~ 138 (233)
T PF14669_consen 79 -----MGCEKFADLQRFCACVAEALTKDSKD---KPG-VPFCEFAETVCKDPQNDEVDKTLLGRI---G--------ISL 138 (233)
T ss_pred -----hhcCCHHHHHHHHHHHHHHHHhcccc---cCC-CCHHHHHHHHhcCCccchhhhhhhhHH---H--------HHH
Confidence 11111222221 2233333322 222 235555555555544444233332221 1 257
Q ss_pred HHHHhccCCHHHHHHHHHHhhc--------C---------CcHHHHHHHHHHHHHcCchHHHHHHHHH
Q 044786 261 VDMYGKCRLLRDAERVFELIVD--------K---------KNIASWNAMLVGYIRNGLYVEATKFLYL 311 (340)
Q Consensus 261 i~~~~~~~~~~~A~~~~~~~~~--------~---------~~~~~~~~li~~~~~~~~~~~a~~~~~~ 311 (340)
|-.|-+..++.+..++++.+.. + +--..-|.-...|.+.|..|.|+.++++
T Consensus 139 m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 139 MYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 7788888889999998887753 0 2234567777889999999999999884
No 483
>cd08810 CARD_BCL10 Caspase activation and recruitment domain of B-cell lymphoma 10. Caspase activation and recruitment domain (CARD) similar to that found in BCL10 (B-cell lymphoma 10). BCL10 and Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1) are the integral components of CBM signalosomes. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells) and with CARMA1 to form L-CBM (CBM complex in lymphoid immune cells), to mediate activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. Both CARMA1 and CARD9 associate with BCL10 via a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by asso
Probab=28.84 E-value=1.6e+02 Score=19.13 Aligned_cols=57 Identities=14% Similarity=0.071 Sum_probs=37.0
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCcCCcccHHHHHHHHHccc
Q 044786 29 AFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVA 91 (340)
Q Consensus 29 a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g 91 (340)
+..++..+.+. |+- +.. ..=...+...+.+.|..+++.+. +++..|.+++.++-..+
T Consensus 18 ~~~l~d~L~s~-~IL-t~~---d~EeI~~~~t~~~qa~~LLdiL~-rGp~Af~~F~esL~~~~ 74 (84)
T cd08810 18 ADRHFDYLRSK-RIL-TRD---DCEEISCRTTSRKQAGKLLDILA-ENPKGLDALIESIRRER 74 (84)
T ss_pred HHHHHHHHHHc-CCC-CHH---HHHHHhccCCcHHHHHHHHHHHh-hCchHHHHHHHHHHHcc
Confidence 44477777776 542 222 22333446677888888888888 88888888887776544
No 484
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=28.81 E-value=1.6e+02 Score=18.88 Aligned_cols=28 Identities=7% Similarity=0.031 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhhcC
Q 044786 255 YVQCGLVDMYGKCRLLRDAERVFELIVDK 283 (340)
Q Consensus 255 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 283 (340)
.....+++.+.+ ++++++...+.++...
T Consensus 6 ~~i~~i~~~~~~-~~~~~~~~~~~~l~~~ 33 (89)
T PF08542_consen 6 EVIEEILESCLN-GDFKEARKKLYELLVE 33 (89)
T ss_dssp HHHHHHHHHHHH-TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh-CCHHHHHHHHHHHHHc
Confidence 333444444433 4677777666666543
No 485
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=28.55 E-value=5.6e+02 Score=24.91 Aligned_cols=48 Identities=8% Similarity=-0.006 Sum_probs=24.7
Q ss_pred HHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHc
Q 044786 97 ITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKL 146 (340)
Q Consensus 97 ~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 146 (340)
...+.+|+.+-..++ .....+...++-.|....+++...++.+.+.+.
T Consensus 183 ~~~L~~mR~RlDnp~--VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i 230 (1226)
T KOG4279|consen 183 NDYLDKMRTRLDNPD--VLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI 230 (1226)
T ss_pred HHHHHHHHhhcCCcc--ccCHHHHHHHHhhhccccchHHHHHHHHHHHhC
Confidence 344555554421221 223344455666666666666666666666554
No 486
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=28.38 E-value=77 Score=19.25 Aligned_cols=18 Identities=28% Similarity=0.206 Sum_probs=12.2
Q ss_pred chHHHHHHHHHHHHcCCc
Q 044786 301 LYVEATKFLYLMKASGIQ 318 (340)
Q Consensus 301 ~~~~a~~~~~~m~~~g~~ 318 (340)
+++.|+..|.++...|--
T Consensus 40 d~~~Al~~F~~lk~~~~I 57 (63)
T smart00804 40 DYERALKNFTELKSEGSI 57 (63)
T ss_pred CHHHHHHHHHHHHhcCCC
Confidence 567777777777766533
No 487
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=28.33 E-value=4.6e+02 Score=23.91 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=13.0
Q ss_pred cCchHHHHHHHHHHHHcCCccc
Q 044786 299 NGLYVEATKFLYLMKASGIQIQ 320 (340)
Q Consensus 299 ~~~~~~a~~~~~~m~~~g~~~~ 320 (340)
.|+.+.|+.+++++...|..|.
T Consensus 258 ~~d~~~al~~l~~L~~~g~~~~ 279 (486)
T PRK14953 258 ESDVDEAIKFLRTLEEKGYNLN 279 (486)
T ss_pred CCCHHHHHHHHHHHHHcCCCHH
Confidence 4566666666666666555443
No 488
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=28.14 E-value=1.6e+02 Score=21.42 Aligned_cols=39 Identities=8% Similarity=0.101 Sum_probs=31.5
Q ss_pred HHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 044786 16 LIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLM 55 (340)
Q Consensus 16 li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~ 55 (340)
++..+-+.|-..+...+++.+... |+..+...|+.++.-
T Consensus 115 vL~~ak~kgLisk~Kpild~LI~~-GF~iS~~~~eeiL~~ 153 (157)
T COG2405 115 VLALAKSKGLISKDKPILDELIEK-GFRISRSILEEILRK 153 (157)
T ss_pred HHHHHHHcCcccchHHHHHHHHHh-cCcccHHHHHHHHHH
Confidence 444455778888899999999988 999999998887754
No 489
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=28.11 E-value=3.1e+02 Score=21.88 Aligned_cols=21 Identities=14% Similarity=0.297 Sum_probs=11.1
Q ss_pred HHHHHhcCChhHHHHHHhhcC
Q 044786 53 LLMHVSCGQLDTARQLFDEMP 73 (340)
Q Consensus 53 i~~~~~~~~~~~a~~~~~~~~ 73 (340)
|......|++++|.+....+.
T Consensus 71 Ir~~I~~G~Ie~Aie~in~l~ 91 (228)
T KOG2659|consen 71 IRRAIEEGQIEEAIEKVNQLN 91 (228)
T ss_pred HHHHHHhccHHHHHHHHHHhC
Confidence 344455555555555555544
No 490
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=28.05 E-value=2.1e+02 Score=19.80 Aligned_cols=74 Identities=15% Similarity=0.105 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhh-cCCcHHHHHHHHHHHHHcCchHHHHHHHHHHHHcC
Q 044786 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIV-DKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASG 316 (340)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 316 (340)
+..+.+.+...+- -...+--+-+..+.+.|++++| +..-.. ..||...|-+| +-.+.|--+++...+.++..+|
T Consensus 25 A~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~A--Ll~~~~~~~pdL~p~~AL--~a~klGL~~~~e~~l~rla~~g 99 (116)
T PF09477_consen 25 ANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEA--LLLPQCHCYPDLEPWAAL--CAWKLGLASALESRLTRLASSG 99 (116)
T ss_dssp HHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHH--HHHHTTS--GGGHHHHHH--HHHHCT-HHHHHHHHHHHCT-S
T ss_pred HHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHH--HHhcccCCCccHHHHHHH--HHHhhccHHHHHHHHHHHHhCC
Confidence 5666666665543 2222223444456677777777 222221 13677766555 3346677777777777665554
No 491
>TIGR03184 DNA_S_dndE DNA sulfur modification protein DndE. This model describes the DndE protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=27.79 E-value=2e+02 Score=19.64 Aligned_cols=93 Identities=15% Similarity=0.122 Sum_probs=46.2
Q ss_pred hhHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhcCChhHHHHHHhhcCcCCcccHHHHHHHHHcccChhHHHHHHHHHHH
Q 044786 27 AGAFELLNHIRKRVNIKP-TLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMK 105 (340)
Q Consensus 27 ~~a~~~~~~m~~~~g~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 105 (340)
++|.+.+..+++..|+.| |...--++...+..-..+..+..-.+ .+.+ ++.+.-.|+++.....+-+..-
T Consensus 5 ~~a~~~L~~Lk~~Tgi~~~NilcR~A~~~SL~~~~~~~~~~~~~d----~~~E-----~~~~T~~Ge~~~i~~alLkq~~ 75 (105)
T TIGR03184 5 QTAKDQLRRLKRRTGLTPWNILCRWAFCLSLEEGSTPGVADIKLD----GNVE-----IDWYTFAGEYGDIYLALLKQRC 75 (105)
T ss_pred HHHHHHHHHHhcccCCCcchHHHHHHHHHHHhcCCCCCccccCCC----CCeE-----EEeeeecCchHHHHHHHHHHHH
Confidence 568888888888879999 65554444444433332321111000 0100 1111122666655444443332
Q ss_pred hhcCCccccchHHHHHHHHHHhhhcc
Q 044786 106 RKKGHMLLVFPAWIIVCVLKACVCTM 131 (340)
Q Consensus 106 ~~~~~~~~~~~~~~~~~ll~~~~~~~ 131 (340)
...++ .++...+...++++...|
T Consensus 76 ~~~~~---~~d~e~l~~~~~lHl~rG 98 (105)
T TIGR03184 76 VADGP---ELDDESLAKALNLHVHRG 98 (105)
T ss_pred HccCC---CCCHHHHHHHHHHHHHHH
Confidence 11144 566666776666665554
No 492
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=27.56 E-value=5.2e+02 Score=24.28 Aligned_cols=202 Identities=11% Similarity=-0.034 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHc------CCCCchhHHHHHHHHHHhhcCHHHHHHHHHHcccC--ChhhHHHHHHHHhccCchhHHHHHH
Q 044786 135 LGKQVHGLLFKL------GSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH--NTVVWTAKIVNNCREGHFHQVFNDF 206 (340)
Q Consensus 135 ~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~ 206 (340)
.+.++.+.+.+. .+..+....-..+--..+.=+.++-.++++++... ....++.++.+....|-...+.-+.
T Consensus 322 ~~~~l~~~l~~~~~~~~~~~~~~~~~~f~~Lv~~lr~l~~~~L~~l~~~~~~~~~~~~~r~~~lDal~~aGT~~av~~i~ 401 (618)
T PF01347_consen 322 NLKELLKELADLLEEPEDPVSKETLSKFSRLVRLLRTLSYEDLEELYKQLKSKSKKEQARKIFLDALPQAGTNPAVKFIK 401 (618)
T ss_dssp ---HHHHHHHHHHHH-SSS--TTHHHHHHHHHHHHTTS-HHHHHHHHHHHTTS---HHHHHHHHHHHHHH-SHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHHcCCHHHHHHHH
Q ss_pred HHHhhcccCCChhhHHHHHHhcccCCchhchHHHHHHHHHHhCCCccHH-------HHHHHHHHHhccC-----------
Q 044786 207 KEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEY-------VQCGLVDMYGKCR----------- 268 (340)
Q Consensus 207 ~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~li~~~~~~~----------- 268 (340)
+.+....+.+....-..+.-......-..+....++..+.......+.. ++..++.-+|...
T Consensus 402 ~~I~~~~~~~~ea~~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~ 481 (618)
T PF01347_consen 402 DLIKSKKLTDDEAAQLLASLPFHVRRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSR 481 (618)
T ss_dssp HHHHTT-S-HHHHHHHHHHHHHT-----HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------S
T ss_pred HHHHcCCCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccch
Q ss_pred -----CHHHHHHHHHHhhcCCcHHHHHHHHHHHHHcCchHHHHHHHHHHHHcCCccchhHHHHHHHHhhhcCcc
Q 044786 269 -----LLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISAS 337 (340)
Q Consensus 269 -----~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~a~~~~g~~ 337 (340)
-.+.....+.......+...-...|.++...|.. .++..+..........+...=...|.|+.+....
T Consensus 482 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~-~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~ 554 (618)
T PF01347_consen 482 CIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP-ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKH 554 (618)
T ss_dssp S--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G-GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT
T ss_pred hhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc-hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhc
No 493
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=27.31 E-value=4e+02 Score=22.90 Aligned_cols=65 Identities=14% Similarity=0.123 Sum_probs=51.0
Q ss_pred ChhHHHHHHHHHHHhhcCCccccchHH----HHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 044786 92 DYQECITLFAEMMKRKKGHMLLVFPAW----IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYG 163 (340)
Q Consensus 92 ~~~~a~~~~~~m~~~~~~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 163 (340)
-.+++..+++.+... .|+.. -|.++.+.....|.++.++.+|++.+..|-+|-...-..+++.+-
T Consensus 118 p~eei~~~L~~li~~-------IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 118 PKEEILATLSDLIKN-------IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred CHHHHHHHHHHHHhc-------CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 345777788877776 56554 577788888889999999999999999999987777777777655
No 494
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=27.30 E-value=2.2e+02 Score=19.81 Aligned_cols=22 Identities=18% Similarity=0.425 Sum_probs=11.7
Q ss_pred HHHHhccCCHHHHHHHHHHhhc
Q 044786 261 VDMYGKCRLLRDAERVFELIVD 282 (340)
Q Consensus 261 i~~~~~~~~~~~A~~~~~~~~~ 282 (340)
|+-+-+|...++|+++.+-|..
T Consensus 68 iD~lrRC~T~EEALEVInylek 89 (128)
T PF09868_consen 68 IDYLRRCKTDEEALEVINYLEK 89 (128)
T ss_pred HHHHHHhCcHHHHHHHHHHHHH
Confidence 3444555555555555555543
No 495
>PRK09169 hypothetical protein; Validated
Probab=27.23 E-value=9.3e+02 Score=27.08 Aligned_cols=328 Identities=10% Similarity=-0.005 Sum_probs=175.8
Q ss_pred CCcchhHHHHHHhhhccchhhHHHHHHHHHhhc------CCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcC-----cC-
Q 044786 8 ITTDMYTCLIKECTFQKDSAGAFELLNHIRKRV------NIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMP-----LR- 75 (340)
Q Consensus 8 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~------g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~-----~~- 75 (340)
.+...+..+++++++-.+...+...-+.+-... -...+......++++++|.-+-..+...-+.+. ++
T Consensus 160 l~~~~v~~lLNalSKWP~~~~c~~aa~~lA~~la~~~~l~~al~~q~va~~lnalSKwp~~~~cr~a~~~lA~rL~~~~~ 239 (2316)
T PRK09169 160 LDAISFALLLNALSKWPDNTDCQTAAEQLADRLASDSRLLQAMDAQEVANALNALSKWPDSPRCRNAAERLAERLADEPG 239 (2316)
T ss_pred hhhHHHHHHHHHhccCCCchHHHHHHHHHHHHhccCHHHHHhcchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhcChH
Confidence 345566777777777666555554444442210 012244556677777777766555444443332 11
Q ss_pred -----CcccHHHHHHHHHcccChhHHHHHHHHHHH---hhcCCccccchHHHHHHHHHHhhhccchhhHH----HHHHHH
Q 044786 76 -----DFNSWAVMIVGYVDVADYQECITLFAEMMK---RKKGHMLLVFPAWIIVCVLKACVCTMNMELGK----QVHGLL 143 (340)
Q Consensus 76 -----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~----~~~~~~ 143 (340)
+......++++++|-.+-+.+.+....+-. ...+.. ...+..-....++++.+-.+-+.+. .+-..+
T Consensus 240 l~~~l~~q~va~~LNAlSKWp~~~~c~~aa~~lA~rla~~~~lr-~~~~~Q~vAN~LNALSKwp~~~~cr~aa~~LA~rL 318 (2316)
T PRK09169 240 LLQSLRAQEVALLLNALSKWPDDEACRQAAEALAARLAREPGLR-LALDPQGVANALNALSKWPDTEACRQAAEALAERL 318 (2316)
T ss_pred HHHhcCHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhcChhhh-hhcCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHH
Confidence 334566788888887665554433333222 110110 1346666778888888875543322 222222
Q ss_pred HH---cCCCCchhHHHHHHHHHHhhcCHHHHH----HHHHHcc-------cCChhhHHHHHHHHhccCchhH----HHHH
Q 044786 144 FK---LGSSRNISLTGSLINFYGKFRCLEDAD----FVFSQLK-------RHNTVVWTAKIVNNCREGHFHQ----VFND 205 (340)
Q Consensus 144 ~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~----~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~----a~~~ 205 (340)
.. .....+..-....+++++|-.+-+.+. .+-+.+. .-+..-..+.+.++.+.++-+. |..+
T Consensus 319 ~~~~~l~~~~~aQ~vAN~LNALSKWp~~~~c~~Aa~~LA~rL~~~~~l~~~~npQelANaLnALSKwp~~~~cr~AA~aL 398 (2316)
T PRK09169 319 AQERGLLQAMNAQAVANALNALSKWPDEEACRAAAEALAARLARDAGLRRALNAQELANALNALSKWPDEEACRAAAEAL 398 (2316)
T ss_pred HhChhhhhhCCHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhChhhhhhCCHHHHHHHHHHHHcCCCchHHHHHHHHH
Confidence 11 112234445566788888877665432 2323332 1155667778888888776442 3334
Q ss_pred HHHHhhc-c--cCCChhhHHHHHHhcccCCchhc---hHHHHHHHHHHh---CCCccHHHHHHHHHHHhccCCHH----H
Q 044786 206 FKEMGRE-R--IKKNSYTFSSVLKACGGVDDDGN---CGRQMHANIVKI---GLESDEYVQCGLVDMYGKCRLLR----D 272 (340)
Q Consensus 206 ~~~m~~~-~--~~p~~~t~~~ll~~~~~~~~~~~---~~~~~~~~~~~~---~~~~~~~~~~~li~~~~~~~~~~----~ 272 (340)
...+... + -..|..-....+.++++-+.-+. ++..+...+... .-..++.-....+.+++|-.+-+ .
T Consensus 399 A~rL~~~~~l~~~fnaQ~vANaLnALsKWp~~~~c~~aa~aLA~rl~~~a~lr~~fn~QeLaN~LnALsKWp~~~~c~~a 478 (2316)
T PRK09169 399 AARLARDAGLRAALNAQGVANALNALSKWPGAEACRQAALALAARLAADARLRNALSAQELANALNALSKWPDEAACRRA 478 (2316)
T ss_pred HHHHHhchhhhhhcChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhchhhhhhCCHHHHHHHHHHHhcCCchHHHHHH
Confidence 4444332 1 12456778889999998776542 122222222211 11235666667888888877644 2
Q ss_pred HHHHHHHhhcC------CcHHHHHHHHHHHHHcCchHHHHHHHH----HHHHc---CCccchhHHHHHHHHhhhcCc
Q 044786 273 AERVFELIVDK------KNIASWNAMLVGYIRNGLYVEATKFLY----LMKAS---GIQIQESLINDLRIACSSISA 336 (340)
Q Consensus 273 A~~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~~~----~m~~~---g~~~~~~t~~~ll~a~~~~g~ 336 (340)
+..+...+... -+..-....++++.+.++.+.+...-+ ++... --..+..-+..+++|+++-++
T Consensus 479 a~~LA~rl~~~~~l~~af~~Q~lAN~LnALsKwp~~~~c~~aA~aLA~rla~~~~l~~afnpQ~lAN~LnALSKWP~ 555 (2316)
T PRK09169 479 AEALAARLAGDAELRQALDAQGLANALNALSKWPDSDACRAAAEALADRLAQDPALLQAMDAQGLANTLNALSKWPE 555 (2316)
T ss_pred HHHHHHHHhcChhhhhhcChHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhcChhhhhhcCHHHHHHHHHHHHcCCC
Confidence 34445555332 256667788899999888766533322 22221 123455666777777776543
No 496
>PRK10941 hypothetical protein; Provisional
Probab=27.19 E-value=3.6e+02 Score=22.26 Aligned_cols=57 Identities=16% Similarity=0.087 Sum_probs=28.3
Q ss_pred HHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHc
Q 044786 121 VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL 178 (340)
Q Consensus 121 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 178 (340)
+.+-.++.+.++++.|.++.+.+....+. ++.-+.--.-.|.+.|.+..|..=++..
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~f 241 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYF 241 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 33445555556666666666555554422 3333333333455555555555544443
No 497
>KOG4414 consensus COP9 signalosome, subunit CSN8 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=27.16 E-value=2.5e+02 Score=20.44 Aligned_cols=30 Identities=10% Similarity=0.049 Sum_probs=21.8
Q ss_pred CchhHHHHHHHHHHhhcCHHHHHHHHHHcc
Q 044786 150 RNISLTGSLINFYGKFRCLEDADFVFSQLK 179 (340)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 179 (340)
|+...|...+.+|.-..+.+.|.-+++++.
T Consensus 37 ~~dw~Ya~~L~~Yf~~dD~dnARfLWKRIP 66 (197)
T KOG4414|consen 37 HDDWPYAIHLAGYFLHDDCDNARFLWKRIP 66 (197)
T ss_pred CCcchHHHHHHHHHHhccchhHHHHHHhCC
Confidence 455677777777777777777777777764
No 498
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=27.04 E-value=3.7e+02 Score=22.43 Aligned_cols=59 Identities=8% Similarity=-0.110 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHcccC-ChhhHHHHHHHHhccCchhHHHHHHHHHhhc
Q 044786 154 LTGSLINFYGKFRCLEDADFVFSQLKRH-NTVVWTAKIVNNCREGHFHQVFNDFKEMGRE 212 (340)
Q Consensus 154 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 212 (340)
.-..++....+.|+.+.-..+++..... +......++.+.+...+.+...++++.....
T Consensus 171 lr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~~ 230 (324)
T PF11838_consen 171 LRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLDLLLSN 230 (324)
T ss_dssp HHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHHHHcCC
Confidence 3344444444444444434444433322 3334455555555555555555555555553
No 499
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=26.65 E-value=9.6e+02 Score=27.04 Aligned_cols=115 Identities=8% Similarity=-0.022 Sum_probs=56.9
Q ss_pred HHHHHHHcccChhHHHHHHHH----HHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHH
Q 044786 82 VMIVGYVDVADYQECITLFAE----MMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGS 157 (340)
Q Consensus 82 ~li~~~~~~g~~~~a~~~~~~----m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 157 (340)
.+..+-.+.+.+.+|...+++ ..+. .....-|..+...|+..+++|.+..+...- .. +... ..
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~-------~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r-~a----~~sl-~~ 1454 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEK-------ETEEALYFLLQNLYGSIHDPDGVEGVSARR-FA----DPSL-YQ 1454 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchh-------HHHHHHHHHHHHHHHhcCCcchhhhHHHHh-hc----CccH-HH
Confidence 344455566666666666666 2222 223334444444666666666665554431 11 1111 22
Q ss_pred HHHHHHhhcCHHHHHHHHHHcccCC---hhhHHHHHHHHhccCchhHHHHHHHHH
Q 044786 158 LINFYGKFRCLEDADFVFSQLKRHN---TVVWTAKIVNNCREGHFHQVFNDFKEM 209 (340)
Q Consensus 158 l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m 209 (340)
-|......|++..|...|+.+.+.+ ..+++-++......|.++.++...+..
T Consensus 1455 qil~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~ 1509 (2382)
T KOG0890|consen 1455 QILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGL 1509 (2382)
T ss_pred HHHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcch
Confidence 3334555566666666666665432 334555555555555555555544333
No 500
>PF12554 MOZART1: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR022214 This family of proteins is found in eukaryotes. Proteins in this family are typically between 71 and 105 amino acids in length. There is a single completely conserved residue L that may be functionally important.
Probab=26.43 E-value=1.3e+02 Score=17.08 Aligned_cols=26 Identities=15% Similarity=0.244 Sum_probs=20.2
Q ss_pred HHHHcCchHHHHHHHHHHHHcCCccc
Q 044786 295 GYIRNGLYVEATKFLYLMKASGIQIQ 320 (340)
Q Consensus 295 ~~~~~~~~~~a~~~~~~m~~~g~~~~ 320 (340)
-+...|--.+++.+.-++.+.|+.|.
T Consensus 13 ~lLntgLd~etL~ici~L~e~GVnPe 38 (48)
T PF12554_consen 13 DLLNTGLDRETLSICIELCENGVNPE 38 (48)
T ss_pred HHHcCCCCHHHHHHHHHHHHCCCCHH
Confidence 45566777888888888999987665
Done!