Query 044786
Match_columns 340
No_of_seqs 389 out of 1250
Neff 11.5
Searched_HMMs 29240
Date Mon Mar 25 11:33:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044786.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044786hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 2.8E-35 9.7E-40 258.2 19.0 215 94-335 7-224 (501)
2 4g26_A Pentatricopeptide repea 100.0 9.9E-34 3.4E-38 248.4 20.2 201 2-230 17-222 (501)
3 2xpi_A Anaphase-promoting comp 100.0 8.2E-30 2.8E-34 231.0 33.2 323 8-337 115-532 (597)
4 2xpi_A Anaphase-promoting comp 100.0 2.7E-30 9.3E-35 234.2 29.7 321 4-337 194-566 (597)
5 1w3b_A UDP-N-acetylglucosamine 99.9 7.3E-24 2.5E-28 181.9 34.9 295 8-315 65-368 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.9 1.2E-23 4E-28 180.6 33.8 315 9-337 32-355 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 2E-22 7E-27 176.1 32.7 302 7-324 23-365 (450)
8 2y4t_A DNAJ homolog subfamily 99.9 3.4E-20 1.2E-24 162.1 33.3 318 7-338 57-442 (450)
9 3ieg_A DNAJ homolog subfamily 99.9 4.4E-19 1.5E-23 149.9 32.7 309 9-332 2-351 (359)
10 2gw1_A Mitochondrial precursor 99.9 1.8E-19 6.3E-24 159.9 30.6 322 8-337 37-465 (514)
11 3hym_B Cell division cycle pro 99.9 6.6E-19 2.3E-23 147.2 27.9 271 7-314 19-298 (330)
12 3hym_B Cell division cycle pro 99.9 1.2E-18 4.2E-23 145.6 28.4 250 77-337 22-286 (330)
13 2gw1_A Mitochondrial precursor 99.9 7.9E-19 2.7E-23 155.9 28.7 321 10-336 6-430 (514)
14 3fp2_A TPR repeat-containing p 99.8 7.5E-17 2.6E-21 144.0 33.4 298 7-316 56-492 (537)
15 1fch_A Peroxisomal targeting s 99.8 2.1E-18 7.2E-23 146.6 21.1 254 48-310 66-354 (368)
16 3spa_A Mtrpol, DNA-directed RN 99.8 2E-20 6.9E-25 169.9 8.3 117 152-268 127-250 (1134)
17 4eqf_A PEX5-related protein; a 99.8 1.2E-17 4E-22 142.0 24.6 256 9-310 64-351 (365)
18 3fp2_A TPR repeat-containing p 99.8 4.8E-17 1.7E-21 145.2 29.0 318 10-336 25-477 (537)
19 4eqf_A PEX5-related protein; a 99.8 1.4E-17 4.8E-22 141.5 22.2 253 76-337 64-343 (365)
20 1fch_A Peroxisomal targeting s 99.8 5.1E-17 1.7E-21 138.0 25.1 295 23-338 14-347 (368)
21 3spa_A Mtrpol, DNA-directed RN 99.8 8.2E-20 2.8E-24 166.0 8.1 147 183-335 127-286 (1134)
22 3ieg_A DNAJ homolog subfamily 99.8 3.3E-16 1.1E-20 132.2 29.8 279 7-298 34-352 (359)
23 3cv0_A Peroxisome targeting si 99.8 3.5E-17 1.2E-21 136.5 23.4 257 9-311 20-311 (327)
24 3cv0_A Peroxisome targeting si 99.8 1.5E-16 5.2E-21 132.6 23.5 251 77-337 21-302 (327)
25 3mkr_A Coatomer subunit epsilo 99.8 1.1E-15 3.9E-20 125.3 27.9 245 56-315 9-264 (291)
26 3mkr_A Coatomer subunit epsilo 99.8 3.4E-16 1.2E-20 128.4 22.6 271 17-307 6-286 (291)
27 1b89_A Protein (clathrin heavy 99.8 1.7E-18 5.7E-23 146.0 8.6 274 11-334 7-282 (449)
28 1b89_A Protein (clathrin heavy 99.7 5.5E-18 1.9E-22 142.9 11.0 255 8-305 30-288 (449)
29 2pl2_A Hypothetical conserved 99.7 1.9E-15 6.7E-20 118.5 18.5 196 6-211 1-213 (217)
30 2xm6_A Protein corresponding t 99.7 1.4E-12 4.7E-17 115.2 35.2 177 130-316 200-397 (490)
31 3uq3_A Heat shock protein STI1 99.7 2.5E-14 8.7E-19 114.9 21.3 235 46-329 5-254 (258)
32 3uq3_A Heat shock protein STI1 99.6 4.9E-14 1.7E-18 113.2 21.0 215 10-244 5-232 (258)
33 2xm6_A Protein corresponding t 99.6 2.4E-12 8.3E-17 113.6 33.7 287 10-318 111-435 (490)
34 2ho1_A Type 4 fimbrial biogene 99.6 7.5E-14 2.6E-18 111.9 21.9 196 10-212 37-238 (252)
35 2vq2_A PILW, putative fimbrial 99.6 9.7E-14 3.3E-18 109.0 21.7 206 9-223 7-220 (225)
36 2ooe_A Cleavage stimulation fa 99.6 2.7E-12 9.1E-17 114.5 33.2 319 7-336 10-478 (530)
37 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.4E-14 4.7E-19 117.7 16.8 246 19-309 14-269 (275)
38 3sf4_A G-protein-signaling mod 99.6 4.7E-14 1.6E-18 121.1 19.1 292 8-302 7-363 (406)
39 2q7f_A YRRB protein; TPR, prot 99.6 4.1E-14 1.4E-18 112.7 17.5 197 7-212 20-222 (243)
40 3u4t_A TPR repeat-containing p 99.6 7.5E-13 2.6E-17 107.3 25.1 177 51-233 8-191 (272)
41 2pl2_A Hypothetical conserved 99.6 6.8E-14 2.3E-18 109.7 18.2 57 255-311 152-210 (217)
42 1ouv_A Conserved hypothetical 99.6 1.3E-12 4.3E-17 106.2 25.6 221 78-316 7-252 (273)
43 2ho1_A Type 4 fimbrial biogene 99.6 7.6E-13 2.6E-17 106.0 23.7 206 79-326 39-247 (252)
44 4a1s_A PINS, partner of inscut 99.6 1.3E-13 4.6E-18 118.7 19.6 269 47-316 49-373 (411)
45 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.2E-12 4.1E-17 106.2 23.7 220 89-316 17-245 (275)
46 2vq2_A PILW, putative fimbrial 99.6 8.4E-13 2.9E-17 103.6 21.8 71 254-326 147-220 (225)
47 3u4t_A TPR repeat-containing p 99.6 5.8E-13 2E-17 108.0 21.2 236 77-324 3-257 (272)
48 4g1t_A Interferon-induced prot 99.6 1.1E-11 3.8E-16 108.7 30.7 298 7-315 48-401 (472)
49 2h6f_A Protein farnesyltransfe 99.6 1.5E-12 5E-17 110.5 23.7 240 46-297 97-364 (382)
50 3sf4_A G-protein-signaling mod 99.6 1.1E-12 3.8E-17 112.5 23.4 294 43-337 6-363 (406)
51 1xi4_A Clathrin heavy chain; a 99.6 8.5E-12 2.9E-16 117.7 30.3 280 8-335 983-1264(1630)
52 3ro2_A PINS homolog, G-protein 99.6 4.3E-13 1.5E-17 111.8 19.5 272 11-315 6-332 (338)
53 2h6f_A Protein farnesyltransfe 99.6 1.2E-12 4.1E-17 111.0 22.2 241 10-265 97-364 (382)
54 4a1s_A PINS, partner of inscut 99.5 4.6E-13 1.6E-17 115.3 19.4 268 12-282 50-371 (411)
55 3ro2_A PINS homolog, G-protein 99.5 7.3E-13 2.5E-17 110.4 19.6 258 48-337 7-319 (338)
56 3ulq_A Response regulator aspa 99.5 1.4E-12 4.9E-17 111.3 21.1 295 20-315 22-368 (383)
57 1xi4_A Clathrin heavy chain; a 99.5 1.3E-11 4.3E-16 116.6 28.4 252 16-312 1055-1306(1630)
58 1ouv_A Conserved hypothetical 99.5 1.1E-11 3.7E-16 100.6 24.8 189 9-212 5-215 (273)
59 4g1t_A Interferon-induced prot 99.5 5E-12 1.7E-16 110.9 24.5 305 10-323 94-468 (472)
60 2q7f_A YRRB protein; TPR, prot 99.5 6.7E-13 2.3E-17 105.6 17.1 193 79-315 25-222 (243)
61 2ooe_A Cleavage stimulation fa 99.5 1.1E-10 3.9E-15 104.0 29.3 295 10-315 121-492 (530)
62 3vtx_A MAMA; tetratricopeptide 99.5 7.2E-12 2.4E-16 95.3 18.5 160 45-211 4-169 (184)
63 2ond_A Cleavage stimulation fa 99.5 1.1E-10 3.9E-15 96.4 27.0 213 94-316 33-271 (308)
64 3vtx_A MAMA; tetratricopeptide 99.5 8.2E-12 2.8E-16 95.0 18.4 166 9-183 4-172 (184)
65 3q15_A PSP28, response regulat 99.4 1.7E-10 6E-15 98.2 26.2 307 8-315 8-365 (378)
66 3e4b_A ALGK; tetratricopeptide 99.4 2E-11 6.8E-16 106.5 19.8 281 15-317 8-353 (452)
67 4abn_A Tetratricopeptide repea 99.4 1.2E-11 3.9E-16 108.6 18.3 210 93-312 84-318 (474)
68 3nf1_A KLC 1, kinesin light ch 99.4 2E-11 6.7E-16 100.7 18.7 237 78-315 28-307 (311)
69 4abn_A Tetratricopeptide repea 99.4 4.9E-12 1.7E-16 111.0 15.5 201 24-236 82-310 (474)
70 3nf1_A KLC 1, kinesin light ch 99.4 9.4E-12 3.2E-16 102.7 15.6 238 8-247 25-306 (311)
71 2ond_A Cleavage stimulation fa 99.4 6E-11 2.1E-15 98.1 19.9 196 8-212 48-270 (308)
72 3as5_A MAMA; tetratricopeptide 99.4 9.4E-11 3.2E-15 88.7 18.3 160 46-212 8-173 (186)
73 3ulq_A Response regulator aspa 99.4 2.8E-10 9.5E-15 97.1 22.4 250 31-282 85-367 (383)
74 3as5_A MAMA; tetratricopeptide 99.3 5.2E-11 1.8E-15 90.1 15.8 161 10-179 8-171 (186)
75 1hz4_A MALT regulatory protein 99.3 1.1E-08 3.6E-13 86.8 31.0 265 15-282 19-321 (373)
76 4gyw_A UDP-N-acetylglucosamine 99.3 4.3E-11 1.5E-15 109.5 16.4 163 8-179 7-172 (723)
77 1hz4_A MALT regulatory protein 99.3 6.6E-10 2.2E-14 94.4 22.7 286 50-336 18-351 (373)
78 4gyw_A UDP-N-acetylglucosamine 99.3 7.6E-11 2.6E-15 107.9 16.8 160 45-211 8-173 (723)
79 3e4b_A ALGK; tetratricopeptide 99.3 3.4E-09 1.2E-13 92.4 26.4 276 25-318 89-390 (452)
80 3edt_B KLC 2, kinesin light ch 99.3 4.5E-10 1.5E-14 91.1 17.3 133 79-211 45-197 (283)
81 3edt_B KLC 2, kinesin light ch 99.2 1.6E-10 5.6E-15 93.7 13.9 224 21-247 12-280 (283)
82 4i17_A Hypothetical protein; T 99.2 1.5E-09 5E-14 85.4 18.9 194 8-219 5-214 (228)
83 1qqe_A Vesicular transport pro 99.2 2.4E-09 8.1E-14 87.7 19.0 168 27-212 2-187 (292)
84 1qqe_A Vesicular transport pro 99.2 1.8E-09 6.2E-14 88.4 18.0 199 12-210 39-267 (292)
85 3q15_A PSP28, response regulat 99.2 3.7E-09 1.3E-13 90.0 20.0 234 48-282 103-364 (378)
86 4i17_A Hypothetical protein; T 99.2 1.3E-09 4.6E-14 85.7 15.3 149 44-199 5-169 (228)
87 2fo7_A Synthetic consensus TPR 99.2 2.1E-09 7E-14 76.5 14.7 127 12-146 3-132 (136)
88 2fo7_A Synthetic consensus TPR 99.1 5.2E-09 1.8E-13 74.4 15.8 127 79-212 3-132 (136)
89 2pzi_A Probable serine/threoni 99.1 3.5E-09 1.2E-13 97.1 16.0 168 21-198 402-583 (681)
90 3mv2_B Coatomer subunit epsilo 99.1 1.4E-08 4.8E-13 82.3 17.5 138 29-177 85-236 (310)
91 4e6h_A MRNA 3'-END-processing 99.1 1.1E-06 3.9E-11 79.7 31.7 211 118-334 344-587 (679)
92 3qky_A Outer membrane assembly 99.0 5.6E-09 1.9E-13 83.9 14.5 96 9-106 14-126 (261)
93 3qky_A Outer membrane assembly 99.0 2.6E-08 8.9E-13 80.0 18.2 165 44-212 13-224 (261)
94 3qou_A Protein YBBN; thioredox 99.0 1.7E-08 6E-13 82.3 17.4 171 31-211 104-283 (287)
95 2r5s_A Uncharacterized protein 99.0 9.5E-09 3.3E-13 77.3 14.6 158 12-177 8-169 (176)
96 3mv2_B Coatomer subunit epsilo 99.0 8.8E-08 3E-12 77.6 20.7 172 136-315 85-282 (310)
97 3urz_A Uncharacterized protein 99.0 1.6E-08 5.5E-13 78.3 15.6 182 12-220 6-192 (208)
98 3urz_A Uncharacterized protein 99.0 2.5E-08 8.5E-13 77.2 15.9 129 45-181 53-186 (208)
99 2ifu_A Gamma-SNAP; membrane fu 99.0 1.6E-08 5.6E-13 83.3 15.6 167 22-211 3-183 (307)
100 2r5s_A Uncharacterized protein 99.0 2.8E-08 9.6E-13 74.7 14.3 155 49-211 9-172 (176)
101 3qou_A Protein YBBN; thioredox 98.9 3.3E-08 1.1E-12 80.7 15.5 166 63-236 103-273 (287)
102 3rjv_A Putative SEL1 repeat pr 98.9 1.8E-07 6.1E-12 72.6 18.8 179 136-322 5-204 (212)
103 2yhc_A BAMD, UPF0169 lipoprote 98.9 8.6E-08 3E-12 75.1 16.8 180 10-212 4-213 (225)
104 4ga2_A E3 SUMO-protein ligase 98.9 9.1E-09 3.1E-13 75.2 10.2 135 20-164 7-146 (150)
105 2pzi_A Probable serine/threoni 98.9 1.4E-08 4.9E-13 93.0 13.7 167 57-233 402-583 (681)
106 1hh8_A P67PHOX, NCF-2, neutrop 98.9 8.9E-08 3.1E-12 74.1 16.2 127 48-180 8-149 (213)
107 4ga2_A E3 SUMO-protein ligase 98.9 1.4E-08 4.9E-13 74.1 10.2 109 56-171 7-118 (150)
108 2vsy_A XCC0866; transferase, g 98.9 4.6E-08 1.6E-12 87.9 14.6 149 23-180 2-156 (568)
109 3rjv_A Putative SEL1 repeat pr 98.9 1.6E-07 5.5E-12 72.8 15.7 173 28-213 4-198 (212)
110 2yhc_A BAMD, UPF0169 lipoprote 98.8 2.1E-07 7.3E-12 72.9 16.6 149 11-179 42-211 (225)
111 4e6h_A MRNA 3'-END-processing 98.8 5.2E-07 1.8E-11 81.9 20.9 212 9-230 342-586 (679)
112 2vsy_A XCC0866; transferase, g 98.8 4.7E-08 1.6E-12 87.9 13.8 148 59-213 2-158 (568)
113 3gw4_A Uncharacterized protein 98.8 6E-08 2E-12 74.4 12.5 154 58-211 4-175 (203)
114 3dra_A Protein farnesyltransfe 98.8 2E-06 7E-11 70.2 20.9 150 131-282 124-286 (306)
115 2ifu_A Gamma-SNAP; membrane fu 98.8 1.5E-07 5.2E-12 77.5 14.4 161 49-210 39-222 (307)
116 1hh8_A P67PHOX, NCF-2, neutrop 98.7 5.3E-07 1.8E-11 69.7 14.7 133 12-149 8-153 (213)
117 2qfc_A PLCR protein; TPR, HTH, 98.7 7.2E-07 2.4E-11 72.9 16.1 158 79-236 77-254 (293)
118 3u3w_A Transcriptional activat 98.7 6.9E-07 2.3E-11 73.0 15.5 161 51-211 80-265 (293)
119 1a17_A Serine/threonine protei 98.7 6.3E-07 2.1E-11 66.1 14.0 93 12-106 15-110 (166)
120 3u3w_A Transcriptional activat 98.7 4.4E-07 1.5E-11 74.2 14.2 164 15-178 80-263 (293)
121 2c2l_A CHIP, carboxy terminus 98.7 2.1E-07 7.3E-12 75.5 12.2 190 8-212 2-199 (281)
122 3dra_A Protein farnesyltransfe 98.7 3E-05 1E-09 63.3 24.2 229 22-260 44-299 (306)
123 1a17_A Serine/threonine protei 98.7 9.3E-07 3.2E-11 65.2 13.9 124 80-210 16-144 (166)
124 1na0_A Designed protein CTPR3; 98.6 5.7E-07 2E-11 62.6 12.0 94 11-106 10-106 (125)
125 3gyz_A Chaperone protein IPGC; 98.6 1.9E-07 6.5E-12 68.0 9.6 27 80-106 39-65 (151)
126 1na0_A Designed protein CTPR3; 98.6 9.3E-07 3.2E-11 61.5 12.8 96 46-147 9-107 (125)
127 2vyi_A SGTA protein; chaperone 98.6 3.6E-07 1.2E-11 64.3 10.7 114 47-167 13-129 (131)
128 2qfc_A PLCR protein; TPR, HTH, 98.6 1.9E-06 6.6E-11 70.3 16.4 167 45-211 74-265 (293)
129 4gco_A Protein STI-1; structur 98.6 7.7E-07 2.6E-11 62.7 12.1 92 49-146 16-110 (126)
130 2lni_A Stress-induced-phosphop 98.6 6.3E-07 2.1E-11 63.3 11.7 95 10-106 16-113 (133)
131 2uy1_A Cleavage stimulation fa 98.6 6.7E-05 2.3E-09 65.9 26.4 288 8-314 45-412 (493)
132 2lni_A Stress-induced-phosphop 98.6 9.7E-07 3.3E-11 62.3 12.2 115 44-165 14-131 (133)
133 4gco_A Protein STI-1; structur 98.6 1.1E-06 3.8E-11 61.9 12.2 96 10-107 13-111 (126)
134 2vyi_A SGTA protein; chaperone 98.6 7E-07 2.4E-11 62.7 11.3 92 80-178 15-106 (131)
135 2e2e_A Formate-dependent nitri 98.6 6.9E-07 2.3E-11 66.9 11.8 121 20-148 20-146 (177)
136 3gw4_A Uncharacterized protein 98.6 9.2E-07 3.1E-11 67.7 12.6 154 129-315 4-176 (203)
137 2c2l_A CHIP, carboxy terminus 98.6 2.5E-06 8.4E-11 69.3 15.3 189 117-315 4-199 (281)
138 2e2e_A Formate-dependent nitri 98.5 5E-07 1.7E-11 67.7 9.9 118 88-212 21-144 (177)
139 3gyz_A Chaperone protein IPGC; 98.5 6.3E-07 2.2E-11 65.2 9.8 122 12-149 11-136 (151)
140 1p5q_A FKBP52, FK506-binding p 98.5 1.6E-06 5.6E-11 72.3 13.4 91 118-209 197-291 (336)
141 1p5q_A FKBP52, FK506-binding p 98.5 2.2E-06 7.5E-11 71.5 13.4 149 22-179 125-292 (336)
142 4b4t_Q 26S proteasome regulato 98.5 2.8E-06 9.7E-11 73.3 14.4 195 17-211 11-244 (434)
143 2fbn_A 70 kDa peptidylprolyl i 98.5 3.4E-07 1.2E-11 70.1 7.2 93 118-211 89-185 (198)
144 2vgx_A Chaperone SYCD; alterna 98.5 8.7E-07 3E-11 64.4 8.9 94 47-146 22-118 (148)
145 3upv_A Heat shock protein STI1 98.4 3.4E-06 1.2E-10 59.1 11.6 95 10-106 4-101 (126)
146 2fbn_A 70 kDa peptidylprolyl i 98.4 3.9E-07 1.3E-11 69.8 7.0 82 153-236 89-174 (198)
147 2vgx_A Chaperone SYCD; alterna 98.4 1.3E-06 4.5E-11 63.4 9.4 92 119-211 23-117 (148)
148 4f3v_A ESX-1 secretion system 98.4 1.8E-05 6.1E-10 63.3 16.5 114 89-210 18-162 (282)
149 4b4t_Q 26S proteasome regulato 98.4 7.4E-05 2.5E-09 64.3 22.0 192 54-245 12-243 (434)
150 4f3v_A ESX-1 secretion system 98.4 1.8E-06 6.2E-11 69.0 10.7 184 22-217 18-240 (282)
151 1elr_A TPR2A-domain of HOP; HO 98.4 2.5E-06 8.6E-11 59.9 9.8 94 11-106 5-108 (131)
152 4gcn_A Protein STI-1; structur 98.4 6.5E-06 2.2E-10 57.9 11.7 99 119-220 10-118 (127)
153 3upv_A Heat shock protein STI1 98.4 6.3E-06 2.2E-10 57.7 11.3 93 48-146 6-101 (126)
154 1elw_A TPR1-domain of HOP; HOP 98.4 1E-05 3.5E-10 55.4 12.3 20 85-104 46-65 (118)
155 3q49_B STIP1 homology and U bo 98.4 7.7E-06 2.6E-10 58.1 11.8 96 9-106 8-106 (137)
156 3q7a_A Farnesyltransferase alp 98.4 0.0007 2.4E-08 56.0 26.0 217 89-315 66-331 (349)
157 2kck_A TPR repeat; tetratricop 98.4 4.6E-06 1.6E-10 56.7 10.1 96 9-106 5-106 (112)
158 3q7a_A Farnesyltransferase alp 98.3 6.2E-05 2.1E-09 62.2 18.1 231 24-283 68-331 (349)
159 1elw_A TPR1-domain of HOP; HOP 98.3 7.6E-06 2.6E-10 56.1 11.1 96 9-106 3-101 (118)
160 2xcb_A PCRH, regulatory protei 98.3 4E-06 1.4E-10 60.2 9.9 91 14-106 22-115 (142)
161 1hxi_A PEX5, peroxisome target 98.3 7.5E-06 2.6E-10 57.0 11.0 94 79-179 19-112 (121)
162 2kck_A TPR repeat; tetratricop 98.3 8.2E-06 2.8E-10 55.4 11.1 95 77-177 6-102 (112)
163 3sz7_A HSC70 cochaperone (SGT) 98.3 9E-06 3.1E-10 60.0 12.0 97 9-107 10-109 (164)
164 3ro3_A PINS homolog, G-protein 98.3 5.2E-06 1.8E-10 60.5 10.7 132 80-211 12-157 (164)
165 2xcb_A PCRH, regulatory protei 98.3 5.8E-06 2E-10 59.4 10.6 88 83-177 24-111 (142)
166 4gcn_A Protein STI-1; structur 98.3 6.4E-06 2.2E-10 58.0 10.5 100 48-147 10-113 (127)
167 3q49_B STIP1 homology and U bo 98.3 1.4E-05 4.6E-10 56.8 11.8 92 119-211 11-105 (137)
168 3sz7_A HSC70 cochaperone (SGT) 98.3 1.1E-05 3.8E-10 59.5 11.5 94 79-179 13-106 (164)
169 1elr_A TPR2A-domain of HOP; HO 98.3 1.1E-05 3.7E-10 56.5 11.0 108 46-158 4-118 (131)
170 2dba_A Smooth muscle cell asso 98.3 1.9E-05 6.4E-10 56.7 12.2 94 10-106 28-128 (148)
171 2uy1_A Cleavage stimulation fa 98.3 0.00056 1.9E-08 60.0 23.2 196 8-212 13-242 (493)
172 2dba_A Smooth muscle cell asso 98.2 3E-05 1E-09 55.6 12.9 96 45-146 27-128 (148)
173 3ro3_A PINS homolog, G-protein 98.2 9.3E-06 3.2E-10 59.2 10.1 95 12-106 11-118 (164)
174 1wao_1 Serine/threonine protei 98.2 2.4E-06 8.1E-11 74.8 6.1 123 11-141 7-134 (477)
175 1hxi_A PEX5, peroxisome target 98.1 1.6E-05 5.6E-10 55.3 9.2 86 54-145 25-113 (121)
176 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 3.4E-05 1.2E-09 67.2 13.1 119 46-171 268-404 (457)
177 1wao_1 Serine/threonine protei 98.1 8.9E-06 3.1E-10 71.2 9.3 115 86-207 15-134 (477)
178 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 4.7E-05 1.6E-09 66.3 13.7 127 77-210 268-413 (457)
179 2xev_A YBGF; tetratricopeptide 98.1 5.6E-05 1.9E-09 52.8 11.5 91 14-106 6-105 (129)
180 2xev_A YBGF; tetratricopeptide 98.1 5.8E-05 2E-09 52.8 11.3 95 81-178 6-102 (129)
181 3k9i_A BH0479 protein; putativ 98.1 1.1E-05 3.8E-10 55.7 6.9 85 22-107 2-91 (117)
182 2if4_A ATFKBP42; FKBP-like, al 98.0 4.4E-05 1.5E-09 63.6 11.2 92 79-178 181-290 (338)
183 3n71_A Histone lysine methyltr 98.0 6.1E-05 2.1E-09 65.8 12.0 126 86-211 318-463 (490)
184 1ihg_A Cyclophilin 40; ppiase 98.0 4.5E-05 1.5E-09 64.4 10.8 85 117-202 273-360 (370)
185 3k9i_A BH0479 protein; putativ 98.0 2.2E-05 7.6E-10 54.1 7.5 83 91-177 4-86 (117)
186 3n71_A Histone lysine methyltr 98.0 3.7E-05 1.3E-09 67.2 10.2 124 20-145 319-463 (490)
187 1ihg_A Cyclophilin 40; ppiase 98.0 8.4E-05 2.9E-09 62.7 12.2 131 79-236 225-359 (370)
188 3rkv_A Putative peptidylprolyl 98.0 0.00018 6.1E-09 52.7 12.6 98 80-178 14-123 (162)
189 3dss_A Geranylgeranyl transfer 97.9 0.006 2E-07 50.1 23.2 90 62-158 90-185 (331)
190 2hr2_A Hypothetical protein; a 97.9 9.2E-05 3.2E-09 53.5 9.4 61 79-145 59-130 (159)
191 3rkv_A Putative peptidylprolyl 97.9 7E-05 2.4E-09 54.9 9.0 64 78-147 64-127 (162)
192 2hr2_A Hypothetical protein; a 97.9 0.00024 8.1E-09 51.4 11.1 67 80-146 14-86 (159)
193 2if4_A ATFKBP42; FKBP-like, al 97.8 3.9E-05 1.3E-09 64.0 7.2 145 13-180 182-327 (338)
194 2l6j_A TPR repeat-containing p 97.8 2.3E-05 7.7E-10 53.2 4.6 63 79-147 6-68 (111)
195 1klx_A Cysteine rich protein B 97.8 0.00075 2.6E-08 47.9 12.5 111 90-213 8-127 (138)
196 1klx_A Cysteine rich protein B 97.7 0.0013 4.6E-08 46.6 13.0 114 196-318 8-129 (138)
197 3dss_A Geranylgeranyl transfer 97.6 0.014 4.9E-07 47.9 19.6 131 26-165 90-240 (331)
198 2kat_A Uncharacterized protein 97.6 0.00049 1.7E-08 47.0 9.0 78 95-179 3-80 (115)
199 1na3_A Designed protein CTPR2; 97.6 0.001 3.5E-08 42.8 10.2 61 80-146 12-72 (91)
200 2kat_A Uncharacterized protein 97.6 0.00046 1.6E-08 47.1 8.7 78 27-106 2-82 (115)
201 1dce_A Protein (RAB geranylger 97.5 0.0029 1E-07 56.5 15.3 167 25-200 44-243 (567)
202 2l6j_A TPR repeat-containing p 97.5 0.00027 9.3E-09 47.7 6.6 61 46-106 4-67 (111)
203 1dce_A Protein (RAB geranylger 97.5 0.013 4.5E-07 52.3 18.9 165 60-233 43-241 (567)
204 3ma5_A Tetratricopeptide repea 97.5 0.00077 2.6E-08 44.7 8.3 83 253-335 6-91 (100)
205 1zu2_A Mitochondrial import re 97.4 0.00055 1.9E-08 49.4 7.4 97 20-125 12-132 (158)
206 1na3_A Designed protein CTPR2; 97.4 0.0011 3.7E-08 42.7 8.3 61 46-106 9-72 (91)
207 1zu2_A Mitochondrial import re 97.4 0.0017 5.9E-08 46.8 9.7 72 88-166 13-94 (158)
208 3ma5_A Tetratricopeptide repea 97.3 0.0013 4.3E-08 43.7 7.9 62 45-106 6-70 (100)
209 3mkq_A Coatomer beta'-subunit; 97.3 0.011 3.7E-07 55.3 16.4 102 162-281 662-763 (814)
210 3ly7_A Transcriptional activat 97.2 0.069 2.4E-06 44.3 18.4 141 74-223 191-348 (372)
211 3ly7_A Transcriptional activat 97.1 0.0087 3E-07 49.6 11.8 62 115-178 275-336 (372)
212 2kc7_A BFR218_protein; tetratr 97.0 0.0038 1.3E-07 40.9 8.0 59 84-148 7-66 (99)
213 3qww_A SET and MYND domain-con 96.9 0.0019 6.6E-08 55.4 7.1 83 129-211 310-410 (433)
214 3qww_A SET and MYND domain-con 96.9 0.0055 1.9E-07 52.6 9.8 91 89-179 310-409 (433)
215 3qwp_A SET and MYND domain-con 96.8 0.0049 1.7E-07 52.9 8.6 25 185-209 331-355 (429)
216 3mkq_A Coatomer beta'-subunit; 96.8 0.041 1.4E-06 51.3 15.6 155 18-209 607-762 (814)
217 3qwp_A SET and MYND domain-con 96.7 0.0098 3.3E-07 51.1 9.5 90 53-144 294-398 (429)
218 2kc7_A BFR218_protein; tetratr 96.6 0.0032 1.1E-07 41.3 4.8 55 17-73 7-62 (99)
219 3bee_A Putative YFRE protein; 96.5 0.025 8.4E-07 36.8 8.5 67 251-317 3-74 (93)
220 3u64_A Protein TP_0956; tetrat 96.3 0.1 3.5E-06 41.6 12.5 141 25-180 102-268 (301)
221 3mkq_B Coatomer subunit alpha; 96.1 0.26 8.8E-06 36.1 13.9 129 160-312 13-141 (177)
222 3mkq_B Coatomer subunit alpha; 95.8 0.34 1.2E-05 35.4 13.5 128 55-209 14-141 (177)
223 3bee_A Putative YFRE protein; 95.8 0.055 1.9E-06 35.1 7.5 49 93-147 25-73 (93)
224 1wy6_A Hypothetical protein ST 95.6 0.34 1.2E-05 33.6 13.7 129 10-148 5-156 (172)
225 3lvg_A Clathrin heavy chain 1; 95.3 0.00042 1.4E-08 59.0 -4.9 238 45-307 53-325 (624)
226 2v5f_A Prolyl 4-hydroxylase su 95.3 0.083 2.8E-06 35.0 7.2 28 79-106 48-75 (104)
227 1pc2_A Mitochondria fission pr 95.3 0.067 2.3E-06 38.1 6.9 80 93-179 14-98 (152)
228 2v5f_A Prolyl 4-hydroxylase su 95.3 0.15 5E-06 33.7 8.4 69 80-148 8-77 (104)
229 4fhn_B Nucleoporin NUP120; pro 94.9 1.6 5.4E-05 42.6 17.6 206 15-248 817-1050(1139)
230 1wy6_A Hypothetical protein ST 94.8 0.66 2.3E-05 32.2 12.3 65 254-318 91-157 (172)
231 1pc2_A Mitochondria fission pr 94.5 0.095 3.2E-06 37.4 6.1 81 24-106 12-100 (152)
232 2ff4_A Probable regulatory pro 94.3 0.21 7.2E-06 42.1 8.8 69 257-325 174-249 (388)
233 3u64_A Protein TP_0956; tetrat 94.1 0.29 1E-05 39.0 8.5 89 62-157 179-282 (301)
234 3lvg_A Clathrin heavy chain 1; 93.8 0.0056 1.9E-07 52.3 -1.8 57 9-68 82-138 (624)
235 4gns_B Protein CSD3, chitin bi 93.2 1.3 4.3E-05 40.8 12.3 52 262-313 345-398 (754)
236 4h7y_A Dual specificity protei 93.2 1.2 4.1E-05 31.6 9.4 37 7-45 10-52 (161)
237 2ff4_A Probable regulatory pro 93.1 0.44 1.5E-05 40.2 8.7 67 82-154 176-247 (388)
238 4gns_B Protein CSD3, chitin bi 92.9 1.6 5.5E-05 40.1 12.5 130 49-179 251-398 (754)
239 4b4t_P 26S proteasome regulato 92.3 4.9 0.00017 34.5 19.5 93 118-210 138-245 (445)
240 4h7y_A Dual specificity protei 92.3 2.1 7.3E-05 30.3 10.6 33 74-106 10-48 (161)
241 4fhn_B Nucleoporin NUP120; pro 91.9 8.8 0.0003 37.5 17.0 52 51-103 817-868 (1139)
242 1nzn_A CGI-135 protein, fissio 91.6 0.94 3.2E-05 31.0 7.2 22 190-211 81-102 (126)
243 4b4t_P 26S proteasome regulato 90.7 7.4 0.00025 33.4 22.3 98 81-178 141-244 (445)
244 1v54_E Cytochrome C oxidase po 89.6 0.82 2.8E-05 29.7 5.1 62 25-87 25-89 (109)
245 2uwj_G Type III export protein 89.5 3 0.0001 27.0 8.5 87 23-122 19-107 (115)
246 2wpv_A GET4, UPF0363 protein Y 89.3 7.6 0.00026 31.4 19.1 149 154-313 35-215 (312)
247 2p58_C Putative type III secre 89.1 3.2 0.00011 26.9 8.7 87 23-122 20-108 (116)
248 1v54_E Cytochrome C oxidase po 88.5 3.7 0.00013 26.7 7.8 57 238-294 29-87 (109)
249 1nzn_A CGI-135 protein, fissio 87.7 5.1 0.00017 27.4 10.4 89 16-106 7-103 (126)
250 3lpz_A GET4 (YOR164C homolog); 87.2 11 0.00038 30.8 19.5 113 154-277 37-159 (336)
251 1qsa_A Protein (soluble lytic 87.1 17 0.00057 32.8 23.8 269 31-314 57-347 (618)
252 4b4t_R RPN7, 26S proteasome re 86.2 6.6 0.00023 33.5 10.4 97 79-178 133-234 (429)
253 2y69_E Cytochrome C oxidase su 86.1 5.9 0.0002 27.4 7.8 56 238-293 72-129 (152)
254 3txn_A 26S proteasome regulato 86.0 14 0.0005 31.0 16.0 167 12-178 21-207 (394)
255 3ffl_A Anaphase-promoting comp 84.3 9.5 0.00033 27.5 10.8 66 79-144 22-90 (167)
256 2y69_E Cytochrome C oxidase su 81.6 9.7 0.00033 26.3 7.4 32 42-73 84-115 (152)
257 4b4t_R RPN7, 26S proteasome re 81.3 10 0.00035 32.3 9.5 95 118-212 132-237 (429)
258 3lpz_A GET4 (YOR164C homolog); 79.8 24 0.0008 28.9 20.8 45 182-230 135-179 (336)
259 3txn_A 26S proteasome regulato 79.6 26 0.00091 29.4 18.2 126 47-178 20-165 (394)
260 2wpv_A GET4, UPF0363 protein Y 79.4 23 0.0008 28.6 18.4 132 48-195 35-177 (312)
261 1wdy_A 2-5A-dependent ribonucl 79.3 19 0.00066 27.9 10.2 79 238-321 198-281 (285)
262 3eiq_C Programmed cell death p 79.3 26 0.00087 29.0 17.5 82 186-268 220-302 (358)
263 3ltm_A Alpha-REP4; protein eng 78.4 18 0.00062 26.8 18.8 153 44-210 31-183 (211)
264 2nsz_A Programmed cell death p 78.2 4.9 0.00017 27.6 5.4 66 257-322 10-79 (129)
265 2nsz_A Programmed cell death p 77.3 14 0.00046 25.4 7.4 22 82-103 12-33 (129)
266 3o48_A Mitochondria fission 1 76.9 16 0.00053 25.2 8.8 66 114-179 37-105 (134)
267 1ug3_A EIF4GI, eukaryotic prot 76.4 12 0.00041 30.7 8.2 23 155-177 144-166 (339)
268 3ffl_A Anaphase-promoting comp 76.0 16 0.00053 26.4 7.5 94 118-211 21-150 (167)
269 2uwj_G Type III export protein 75.4 14 0.00048 24.0 8.7 84 238-327 25-108 (115)
270 2ion_A PDCD4, programmed cell 75.3 6.2 0.00021 28.0 5.4 65 257-321 12-80 (152)
271 3ltj_A Alpharep-4; protein eng 75.0 22 0.00075 26.1 18.3 48 45-92 27-74 (201)
272 1oyz_A Hypothetical protein YI 74.7 28 0.00097 27.2 23.1 47 45-91 36-82 (280)
273 2p58_C Putative type III secre 74.6 15 0.00051 23.9 9.2 84 238-327 26-109 (116)
274 2d2s_A Exocyst complex compone 74.3 24 0.00081 27.2 8.8 88 84-177 25-116 (235)
275 2ion_A PDCD4, programmed cell 72.9 19 0.00065 25.5 7.4 23 81-103 13-35 (152)
276 3esl_A Checkpoint serine/threo 71.3 29 0.001 25.9 9.6 55 92-150 94-148 (202)
277 1zbp_A Hypothetical protein VP 70.2 22 0.00074 28.0 7.7 54 227-282 6-59 (273)
278 3eiq_C Programmed cell death p 69.9 46 0.0016 27.5 13.9 75 256-330 219-297 (358)
279 1zbp_A Hypothetical protein VP 69.5 23 0.00077 27.9 7.6 53 88-146 8-60 (273)
280 2zu6_B Programmed cell death p 67.2 48 0.0016 26.7 14.8 70 186-256 169-239 (307)
281 4ady_A RPN2, 26S proteasome re 66.9 90 0.0031 29.8 21.7 53 54-106 382-440 (963)
282 3ltm_A Alpha-REP4; protein eng 65.9 37 0.0013 25.0 19.1 172 150-335 31-202 (211)
283 4ady_A RPN2, 26S proteasome re 64.5 1E+02 0.0034 29.4 22.5 20 85-104 382-401 (963)
284 1k1a_A B-cell lymphoma 3-encod 64.5 37 0.0013 25.5 8.3 57 16-73 12-70 (241)
285 2fu4_A Ferric uptake regulatio 64.4 10 0.00036 23.3 4.2 57 3-61 10-67 (83)
286 1mzb_A Ferric uptake regulatio 61.6 11 0.00036 26.1 4.2 56 4-61 12-68 (136)
287 2fe3_A Peroxide operon regulat 61.2 13 0.00044 26.1 4.6 57 35-93 12-72 (145)
288 1y8m_A FIS1; mitochondria, unk 60.2 41 0.0014 23.5 10.1 66 114-179 36-104 (144)
289 3eyy_A Putative iron uptake re 59.9 14 0.00049 25.8 4.6 57 3-62 12-68 (145)
290 1wdy_A 2-5A-dependent ribonucl 59.7 57 0.002 25.1 9.0 241 15-278 7-274 (285)
291 2w57_A Ferric uptake regulatio 58.3 14 0.00048 26.0 4.4 58 3-62 10-68 (150)
292 3ygs_P Procaspase 9; apoptosis 54.9 21 0.00072 22.9 4.4 37 166-202 51-87 (97)
293 1k1a_A B-cell lymphoma 3-encod 54.8 61 0.0021 24.2 8.0 20 260-279 153-172 (241)
294 3ygs_P Procaspase 9; apoptosis 54.3 18 0.00062 23.2 4.0 64 31-97 25-88 (97)
295 3ltj_A Alpharep-4; protein eng 54.1 60 0.0021 23.6 20.1 170 151-334 27-196 (201)
296 4a1g_A Mitotic checkpoint seri 53.9 55 0.0019 23.1 8.5 51 96-150 84-134 (152)
297 2o03_A Probable zinc uptake re 52.7 26 0.00088 23.9 4.9 46 291-336 15-60 (131)
298 3lxu_X Tripeptidyl-peptidase 2 48.0 1.1E+02 0.0038 30.4 9.7 64 270-335 1265-1331(1354)
299 3l6a_A Eukaryotic translation 47.3 45 0.0015 27.6 6.3 64 154-217 14-82 (364)
300 3mwm_A ZUR, putative metal upt 47.0 24 0.00081 24.5 4.0 44 292-335 19-62 (139)
301 2b7e_A PRE-mRNA processing pro 45.7 16 0.00054 21.0 2.3 35 199-233 2-37 (59)
302 2p1h_A APAF-1, apoptotic prote 45.2 55 0.0019 20.6 6.8 61 136-200 24-84 (94)
303 4ets_A Ferric uptake regulatio 44.7 82 0.0028 22.4 7.5 71 93-168 13-85 (162)
304 3qil_A Clathrin heavy chain 1; 44.6 34 0.0012 23.0 4.1 54 11-68 33-86 (125)
305 1ug3_A EIF4GI, eukaryotic prot 44.6 1.3E+02 0.0043 24.6 12.8 25 256-280 143-167 (339)
306 2wvi_A Mitotic checkpoint seri 44.3 85 0.0029 22.5 8.8 54 95-152 78-131 (164)
307 2fe3_A Peroxide operon regulat 43.7 74 0.0025 22.1 6.2 9 170-178 39-47 (145)
308 2xig_A Ferric uptake regulatio 43.3 37 0.0013 23.8 4.6 41 295-335 35-75 (150)
309 3mwm_A ZUR, putative metal upt 42.0 53 0.0018 22.6 5.2 48 121-168 17-64 (139)
310 1mzb_A Ferric uptake regulatio 41.4 34 0.0012 23.5 4.1 36 245-281 9-45 (136)
311 4aez_C MAD3, mitotic spindle c 41.1 62 0.0021 24.6 5.6 53 94-150 131-183 (223)
312 2o03_A Probable zinc uptake re 39.8 61 0.0021 22.0 5.2 46 123-168 16-61 (131)
313 1q2z_A ATP-dependent DNA helic 39.7 63 0.0021 21.7 5.0 48 268-318 41-95 (120)
314 3esl_A Checkpoint serine/threo 39.2 1.2E+02 0.004 22.6 12.2 62 132-193 94-156 (202)
315 3bge_A Predicted ATPase; struc 39.1 1.2E+02 0.004 22.6 7.2 63 189-251 10-79 (201)
316 1wgl_A TOLL-interacting protei 38.3 38 0.0013 19.4 3.2 48 271-320 10-57 (59)
317 3eyy_A Putative iron uptake re 38.2 39 0.0013 23.5 4.0 38 243-282 8-45 (145)
318 1zl8_A LIN-7; heterodimer, alp 38.0 51 0.0017 18.1 4.1 23 23-46 6-28 (53)
319 2r9g_A AAA ATPase, central reg 37.8 1.2E+02 0.0042 22.5 8.6 66 188-254 16-88 (204)
320 3ph0_C ASCG; type III secretio 37.8 56 0.0019 18.5 3.9 37 270-306 22-60 (61)
321 3o48_A Mitochondria fission 1 37.4 99 0.0034 21.3 9.2 24 259-282 83-106 (134)
322 4ets_A Ferric uptake regulatio 36.5 1.1E+02 0.0037 21.8 6.2 10 238-247 51-60 (162)
323 2ijq_A Hypothetical protein; s 35.8 1.2E+02 0.0041 21.7 6.4 47 60-106 46-104 (161)
324 2p1h_A APAF-1, apoptotic prote 35.4 83 0.0028 19.7 6.1 63 29-96 24-86 (94)
325 2w57_A Ferric uptake regulatio 34.2 41 0.0014 23.6 3.6 38 244-282 7-45 (150)
326 3ljn_A Hypothetical protein; a 33.8 1.9E+02 0.0064 23.4 8.9 86 15-106 22-110 (364)
327 1oyz_A Hypothetical protein YI 32.8 1.7E+02 0.0058 22.5 21.0 235 71-330 31-276 (280)
328 1rw2_A ATP-dependent DNA helic 31.9 1.1E+02 0.0036 21.7 5.3 48 268-318 72-126 (152)
329 4b4t_S RPN3, 26S proteasome re 31.8 2.6E+02 0.009 24.5 11.1 61 46-106 231-299 (523)
330 3eu9_A Huntingtin-interacting 31.7 79 0.0027 23.4 5.3 12 57-68 50-61 (240)
331 2xig_A Ferric uptake regulatio 31.4 1.3E+02 0.0045 20.9 7.6 46 123-168 32-77 (150)
332 1ixm_A SPO0B, protein (sporula 31.3 1.1E+02 0.0037 22.6 5.6 48 258-311 36-83 (192)
333 2rg8_A Programmed cell death p 31.3 1.2E+02 0.004 21.8 5.6 28 155-182 13-40 (165)
334 3l6a_A Eukaryotic translation 30.5 2.3E+02 0.0079 23.4 11.5 24 14-37 16-39 (364)
335 2rg8_A Programmed cell death p 30.1 1.5E+02 0.0051 21.2 8.5 23 15-37 15-37 (165)
336 3ctd_A Putative ATPase, AAA fa 29.6 1.8E+02 0.0061 21.9 7.6 67 187-253 36-109 (213)
337 2d2s_A Exocyst complex compone 29.6 1.9E+02 0.0064 22.1 12.4 24 16-39 24-47 (235)
338 4a1g_A Mitotic checkpoint seri 29.0 1.5E+02 0.0052 20.9 11.0 60 134-193 82-142 (152)
339 3pvs_A Replication-associated 28.7 2.3E+02 0.008 24.1 8.0 99 235-335 168-304 (447)
340 3qil_A Clathrin heavy chain 1; 28.3 61 0.0021 21.8 3.3 51 258-308 36-86 (125)
341 4b4t_S RPN3, 26S proteasome re 28.1 3.1E+02 0.01 24.1 10.9 61 152-212 231-299 (523)
342 3kea_A K1L; tropism, ANK repea 27.2 2E+02 0.0069 22.3 7.1 181 124-322 35-224 (285)
343 1y8m_A FIS1; mitochondria, unk 27.1 1.6E+02 0.0055 20.5 10.7 24 292-315 83-106 (144)
344 2fu4_A Ferric uptake regulatio 26.6 1.1E+02 0.0037 18.4 6.9 59 208-268 7-66 (83)
345 1oai_A Nuclear RNA export fact 26.2 69 0.0024 18.3 2.9 21 299-319 33-53 (59)
346 3hra_A Ankyrin repeat family p 26.1 1.8E+02 0.0061 20.7 8.0 16 57-72 13-28 (201)
347 2zu6_B Programmed cell death p 25.8 2.6E+02 0.0088 22.4 19.2 64 155-218 169-237 (307)
348 1bd8_A P19INK4D CDK4/6 inhibit 25.2 71 0.0024 21.8 3.7 18 160-177 106-123 (156)
349 2ko4_A Mediator of RNA polymer 24.8 97 0.0033 18.9 3.4 34 4-37 30-63 (81)
350 2qq8_A TBC1 domain family memb 24.3 2.1E+02 0.007 23.2 6.7 44 205-249 215-258 (334)
351 2bn5_A PSI; nuclear protein, s 23.9 75 0.0025 15.5 2.9 22 261-282 9-30 (33)
352 2yru_A Steroid receptor RNA ac 23.5 1.7E+02 0.0058 19.5 5.2 45 238-282 45-89 (118)
353 2keb_A DNA polymerase subunit 22.7 1.6E+02 0.0055 18.9 5.9 27 202-228 28-54 (101)
354 3crd_A Raidd; caspase recruitm 22.5 1.4E+02 0.0049 19.0 4.4 44 165-211 48-91 (100)
355 3k8p_D Protein transport prote 22.0 3.8E+02 0.013 24.4 8.0 88 252-339 398-499 (709)
356 4gq2_M Nucleoporin NUP120; bet 21.4 5.4E+02 0.018 24.6 12.9 113 52-166 816-950 (950)
357 2wvi_A Mitotic checkpoint seri 21.0 2.3E+02 0.008 20.2 10.4 59 134-192 77-136 (164)
358 2f6m_A Suppressor protein STP2 20.9 1.4E+02 0.0047 17.5 4.9 47 12-60 4-50 (65)
359 3k1s_A PTS system, cellobiose- 20.4 1.2E+02 0.0042 19.9 3.6 23 189-211 85-107 (109)
360 2qq8_A TBC1 domain family memb 20.4 3.4E+02 0.012 21.9 7.3 50 239-288 213-262 (334)
361 3aji_A 26S proteasome non-ATPa 20.1 2.6E+02 0.0089 20.4 8.9 54 16-71 9-62 (231)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=2.8e-35 Score=258.16 Aligned_cols=215 Identities=13% Similarity=0.031 Sum_probs=179.9
Q ss_pred hHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHH
Q 044786 94 QECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADF 173 (340)
Q Consensus 94 ~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 173 (340)
..+..+.+++.+.+ . ...+..+++.+|.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.+...++
T Consensus 7 s~~e~L~~~~~~k~--~--~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~-- 80 (501)
T 4g26_A 7 SPSENLSRKAKKKA--I--QQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES-- 80 (501)
T ss_dssp ---------------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS--
T ss_pred chHHHHHHHHHHhc--c--cCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh--
Confidence 34555666666663 2 02344568889999999999999999999999999999999999999999887764321
Q ss_pred HHHHcccCChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCChhhHHHHHHhcccCCchhchHHHHHHHHHHhCCCcc
Q 044786 174 VFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESD 253 (340)
Q Consensus 174 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (340)
...+..++|.++|++|...|+.||..||+++|.+|++.|++++ |..+++.|.+.|+.||
T Consensus 81 --------------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~-A~~l~~~M~~~g~~Pd 139 (501)
T 4g26_A 81 --------------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEM-AFDMVKQMKAFGIQPR 139 (501)
T ss_dssp --------------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHH-HHHHHHHHHHTTCCCC
T ss_pred --------------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHcCCCCc
Confidence 3455678899999999999999999999999999999999977 9999999999999999
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhhc---CCcHHHHHHHHHHHHHcCchHHHHHHHHHHHHcCCccchhHHHHHHHH
Q 044786 254 EYVQCGLVDMYGKCRLLRDAERVFELIVD---KKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIA 330 (340)
Q Consensus 254 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~a 330 (340)
..+|++||.+|++.|++++|.++|++|.. .||..+|++||.+|++.|++++|.+++++|++.|+.|+..||+.++..
T Consensus 140 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~ 219 (501)
T 4g26_A 140 LRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEW 219 (501)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHH
T ss_pred cceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHH
Confidence 99999999999999999999999999987 489999999999999999999999999999999999999999999999
Q ss_pred hhhcC
Q 044786 331 CSSIS 335 (340)
Q Consensus 331 ~~~~g 335 (340)
|+..+
T Consensus 220 F~s~~ 224 (501)
T 4g26_A 220 FKSEV 224 (501)
T ss_dssp HHSHH
T ss_pred HhcCc
Confidence 88754
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=9.9e-34 Score=248.39 Aligned_cols=201 Identities=10% Similarity=0.089 Sum_probs=170.7
Q ss_pred CCCCCCCCcc-hhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCcCCcccH
Q 044786 2 DNLCLPITTD-MYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSW 80 (340)
Q Consensus 2 ~~~g~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 80 (340)
+++++.++++ .++.+|++|++.|++++|+++|+.|.+. |++||..+||.||.+|++.+...++
T Consensus 17 ~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~-Gv~pd~~tyn~Li~~c~~~~~~~~~--------------- 80 (501)
T 4g26_A 17 KKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRN-GVQLSQYHYNVLLYVCSLAEAATES--------------- 80 (501)
T ss_dssp -------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH-TCCCCHHHHHHHHHHHTTCCCCSSS---------------
T ss_pred HHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHhHHHHHHHHHHhCCchhhh---------------
Confidence 4556666655 4788888888889999999999999888 8889999999888888887764432
Q ss_pred HHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHH
Q 044786 81 AVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLIN 160 (340)
Q Consensus 81 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 160 (340)
.+.+..++|.++|++|... |+ .||..||+.+|.+|++.|++++|.++|++|.+.|+.||..+|+++|.
T Consensus 81 -------~~~~~l~~A~~lf~~M~~~--G~---~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~ 148 (501)
T 4g26_A 81 -------SPNPGLSRGFDIFKQMIVD--KV---VPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALF 148 (501)
T ss_dssp -------SCCHHHHHHHHHHHHHHHT--TC---CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred -------hhcchHHHHHHHHHHHHHh--CC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHH
Confidence 2345678899999999988 55 89999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCHHHHHHHHHHcc----cCChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCChhhHHHHHHhccc
Q 044786 161 FYGKFRCLEDADFVFSQLK----RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230 (340)
Q Consensus 161 ~~~~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 230 (340)
+|++.|++++|.++|++|. .||..||++||.+|++.|++++|.+++++|.+.|..|+..||+.++..|+.
T Consensus 149 ~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 149 GFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 9999999999999999996 468899999999999999999999999999999999999999999988865
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.2e-30 Score=231.02 Aligned_cols=323 Identities=8% Similarity=-0.048 Sum_probs=235.8
Q ss_pred CCcchhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCcCC-----------
Q 044786 8 ITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRD----------- 76 (340)
Q Consensus 8 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~----------- 76 (340)
|+..++..++..|.+.|++++|.++|+.+.. .+++..+++.++.+|.+.|++++|.++|+++...+
T Consensus 115 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 191 (597)
T 2xpi_A 115 GNPNDAFWLAQVYCCTGDYARAKCLLTKEDL---YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLM 191 (597)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG---GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------C
T ss_pred CCchHHHHHHHHHHHcCcHHHHHHHHHHHhc---cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccc
Confidence 4455555666666666666666666665542 35677778888888888888888888887544332
Q ss_pred --------cccHHHHHHHHHcccChhHHHHHHHHHHHhhcCC--------------------------------------
Q 044786 77 --------FNSWAVMIVGYVDVADYQECITLFAEMMKRKKGH-------------------------------------- 110 (340)
Q Consensus 77 --------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-------------------------------------- 110 (340)
..+|+.++.+|.+.|++++|.++|++|.+.+...
T Consensus 192 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 271 (597)
T 2xpi_A 192 QDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFL 271 (597)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHH
T ss_pred cccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHH
Confidence 5678888888888888888888888887663110
Q ss_pred ---------------------------ccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 044786 111 ---------------------------MLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYG 163 (340)
Q Consensus 111 ---------------------------~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 163 (340)
...+++..++..++..+.+.|++++|.++|+.+.+.+.. +..++..++.+|.
T Consensus 272 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~ 350 (597)
T 2xpi_A 272 RSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLH 350 (597)
T ss_dssp HHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHH
Confidence 001245556666666666666666666666666655533 5556666666666
Q ss_pred hhcCHHHHHHHHHHccc---CChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCChhhHHHHHHhcccCCchhchHHH
Q 044786 164 KFRCLEDADFVFSQLKR---HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQ 240 (340)
Q Consensus 164 ~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~ 240 (340)
+.|++++|.++++++.+ .+..+|+.++..|.+.|++++|.++|+++.+.. +.+..+|..++.+|.+.|++++ +..
T Consensus 351 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~-A~~ 428 (597)
T 2xpi_A 351 ESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQ-AIS 428 (597)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH-HHH
T ss_pred HhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH-HHH
Confidence 66666666666666542 256678888888888888888888888887642 2346688888888888888876 777
Q ss_pred HHHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhc--CCcHHHHHHHHHHHHHcCchHHHHHHHHHHHHc---
Q 044786 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD--KKNIASWNAMLVGYIRNGLYVEATKFLYLMKAS--- 315 (340)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--- 315 (340)
+++.+.+.+ +.+..+|+.++.+|.+.|++++|.++|+++.. +.+..+|+.++..|.+.|++++|+++|+++.+.
T Consensus 429 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 507 (597)
T 2xpi_A 429 AYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKK 507 (597)
T ss_dssp HHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhc
Confidence 777776643 44778888899999999999999999988875 357888999999999999999999999998777
Q ss_pred -CCccc--hhHHHHHHHHhhhcCcc
Q 044786 316 -GIQIQ--ESLINDLRIACSSISAS 337 (340)
Q Consensus 316 -g~~~~--~~t~~~ll~a~~~~g~~ 337 (340)
+..|+ ..++..+..+|...|..
T Consensus 508 ~~~~p~~~~~~~~~l~~~~~~~g~~ 532 (597)
T 2xpi_A 508 TQSNEKPWAATWANLGHAYRKLKMY 532 (597)
T ss_dssp SCCCSGGGHHHHHHHHHHHHHTTCH
T ss_pred cccchhhHHHHHHHHHHHHHHhcCH
Confidence 77787 67899999999888864
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.7e-30 Score=234.16 Aligned_cols=321 Identities=9% Similarity=-0.019 Sum_probs=250.9
Q ss_pred CCCCCCcchhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHH---------------------------------
Q 044786 4 LCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLN--------------------------------- 50 (340)
Q Consensus 4 ~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~--------------------------------- 50 (340)
.|.+++..+|+.++..|.+.|++++|.++|+.|.+. + +.+...+.
T Consensus 194 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 271 (597)
T 2xpi_A 194 GGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMV-D-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFL 271 (597)
T ss_dssp SSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHH
T ss_pred cccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-C-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHH
Confidence 355667899999999999999999999999999877 3 22333322
Q ss_pred -----HHHHHHHhcCChhHHHHHHhhcCc--CCcccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHH
Q 044786 51 -----RLLLMHVSCGQLDTARQLFDEMPL--RDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCV 123 (340)
Q Consensus 51 -----~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~l 123 (340)
.++..|.+.|++++|.++|+++.+ ++..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..++..+
T Consensus 272 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~l 345 (597)
T 2xpi_A 272 RSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID------PYNLDVYPLH 345 (597)
T ss_dssp HHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCCTTHHHH
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC------cccHHHHHHH
Confidence 235556677888899999988876 677888889999999999999999999888774 3466678888
Q ss_pred HHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHccc---CChhhHHHHHHHHhccCchh
Q 044786 124 LKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR---HNTVVWTAKIVNNCREGHFH 200 (340)
Q Consensus 124 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~ 200 (340)
+.++.+.|++++|.++++.+.+.. +.+..+++.++..|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|+++
T Consensus 346 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 424 (597)
T 2xpi_A 346 LASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHD 424 (597)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 888888888888888888887654 33677888888888888888888888887753 35678888888888888888
Q ss_pred HHHHHHHHHhhcccCCChhhHHHHHHhcccCCchhchHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 044786 201 QVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELI 280 (340)
Q Consensus 201 ~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~ 280 (340)
+|+++|+++.+.+ +.+..+|..+..+|.+.|++++ +..+++.+.+.. +.+..+|+.++..|.+.|++++|.++|+++
T Consensus 425 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 501 (597)
T 2xpi_A 425 QAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILL-ANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNA 501 (597)
T ss_dssp HHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHH-HHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHH-HHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 8888888887653 3466778888888888888866 777777776653 346778888888888888888888888877
Q ss_pred hc-------CCc--HHHHHHHHHHHHHcCchHHHHHHHHHHHHcCCccchhHHHHHHHHhhhcCcc
Q 044786 281 VD-------KKN--IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISAS 337 (340)
Q Consensus 281 ~~-------~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~a~~~~g~~ 337 (340)
.. .|+ ..+|..++.+|.+.|++++|.++|+++.+.+ +.+..+|..+..+|...|..
T Consensus 502 ~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~ 566 (597)
T 2xpi_A 502 LLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIP 566 (597)
T ss_dssp HHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCH
T ss_pred HHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCH
Confidence 54 344 6788888888888888888888888887765 34677888888888887764
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=7.3e-24 Score=181.87 Aligned_cols=295 Identities=10% Similarity=0.013 Sum_probs=192.4
Q ss_pred CCcchhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcC--cC-CcccHHHHH
Q 044786 8 ITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMP--LR-DFNSWAVMI 84 (340)
Q Consensus 8 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~--~~-~~~~~~~li 84 (340)
.+..+|..+...+.+.|++++|.+.|+.+.+. -+.+..+|..+..++.+.|++++|.+.|+++. .| +...+..+.
T Consensus 65 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 142 (388)
T 1w3b_A 65 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLG 142 (388)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 34555666666666666666666666666654 23344556666666666666666666666655 22 223455555
Q ss_pred HHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 044786 85 VGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164 (340)
Q Consensus 85 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 164 (340)
..+...|++++|.+.|+++.+.. +.+..+|..+...+...|++++|...|+++.+.+.. +...+..+...+..
T Consensus 143 ~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~ 215 (388)
T 1w3b_A 143 NLLKALGRLEEAKACYLKAIETQ------PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKE 215 (388)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHT
T ss_pred HHHHHccCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHH
Confidence 66666666666666666666652 334556666666666677777777777666665432 45566666666677
Q ss_pred hcCHHHHHHHHHHccc--C-ChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCC-ChhhHHHHHHhcccCCchhchHHH
Q 044786 165 FRCLEDADFVFSQLKR--H-NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKK-NSYTFSSVLKACGGVDDDGNCGRQ 240 (340)
Q Consensus 165 ~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~~~~~~~~~~ 240 (340)
.|++++|...|++..+ | +..++..+...|...|++++|...|+++.+. .| +..++..+...+.+.|++++ +..
T Consensus 216 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~-A~~ 292 (388)
T 1w3b_A 216 ARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAE-AED 292 (388)
T ss_dssp TTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHH-HHH
T ss_pred cCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHH-HHH
Confidence 7777777776666542 2 4566777777777777777777777777764 23 34567777777777777766 666
Q ss_pred HHHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhc--CCcHHHHHHHHHHHHHcCchHHHHHHHHHHHHc
Q 044786 241 MHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD--KKNIASWNAMLVGYIRNGLYVEATKFLYLMKAS 315 (340)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 315 (340)
.++.+.+. .+.+..++..+...+.+.|++++|.+.++++.. +.+..+|..+...|.+.|++++|.+.|+++.+.
T Consensus 293 ~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 293 CYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHhh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 66666554 245667777777777777888888877777765 235667777777777888888888887777653
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.94 E-value=1.2e-23 Score=180.58 Aligned_cols=315 Identities=9% Similarity=-0.068 Sum_probs=257.5
Q ss_pred CcchhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcC--cC-CcccHHHHHH
Q 044786 9 TTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMP--LR-DFNSWAVMIV 85 (340)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~--~~-~~~~~~~li~ 85 (340)
+...+..+...+.+.|++++|...++...+. .+.+..+|..+...+.+.|++++|.+.|+++. .| +..+|..+..
T Consensus 32 ~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 109 (388)
T 1w3b_A 32 NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ--NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAA 109 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 3445566677778889999999999888876 46678889999999999999999999999876 33 4446888999
Q ss_pred HHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhh
Q 044786 86 GYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165 (340)
Q Consensus 86 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 165 (340)
++...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|+.+.+.... +..+|..+...|.+.
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~ 182 (388)
T 1w3b_A 110 ALVAAGDMEGAVQAYVSALQYN------PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN-FAVAWSNLGCVFNAQ 182 (388)
T ss_dssp HHHHHSCSSHHHHHHHHHHHHC------TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhC------CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 9999999999999999998873 334556777888888889999999999998887533 567888899999999
Q ss_pred cCHHHHHHHHHHccc--C-ChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCC-hhhHHHHHHhcccCCchhchHHHH
Q 044786 166 RCLEDADFVFSQLKR--H-NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKN-SYTFSSVLKACGGVDDDGNCGRQM 241 (340)
Q Consensus 166 ~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~~~~~~ 241 (340)
|++++|...|+++.+ | +...|..+...+...|++++|...|++.... .|+ ..++..+...+...|++++ +...
T Consensus 183 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~-A~~~ 259 (388)
T 1w3b_A 183 GEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAVVHGNLACVYYEQGLIDL-AIDT 259 (388)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH-HHHH
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCHHHHHHHHHHHHHcCCHHH-HHHH
Confidence 999999999998763 2 5567888888999999999999999988774 454 6778888899999999977 7777
Q ss_pred HHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhc--CCcHHHHHHHHHHHHHcCchHHHHHHHHHHHHcCCcc
Q 044786 242 HANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD--KKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQI 319 (340)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~ 319 (340)
++.+.+.. +.++.+|..+...|.+.|++++|.+.|+++.. +++..+|+.+...+.+.|++++|.+.++++.+.. +.
T Consensus 260 ~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~ 337 (388)
T 1w3b_A 260 YRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PE 337 (388)
T ss_dssp HHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TT
T ss_pred HHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CC
Confidence 77777643 33577889999999999999999999998876 4578899999999999999999999999997642 33
Q ss_pred chhHHHHHHHHhhhcCcc
Q 044786 320 QESLINDLRIACSSISAS 337 (340)
Q Consensus 320 ~~~t~~~ll~a~~~~g~~ 337 (340)
+..++..+...+.+.|..
T Consensus 338 ~~~~~~~l~~~~~~~g~~ 355 (388)
T 1w3b_A 338 FAAAHSNLASVLQQQGKL 355 (388)
T ss_dssp CHHHHHHHHHHHHTTTCC
T ss_pred cHHHHHHHHHHHHHcCCH
Confidence 467888888888888764
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=2e-22 Score=176.14 Aligned_cols=302 Identities=10% Similarity=-0.006 Sum_probs=252.9
Q ss_pred CCCcchhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCc---CCcccHHHH
Q 044786 7 PITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL---RDFNSWAVM 83 (340)
Q Consensus 7 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l 83 (340)
|.++..+..+...+.+.|++++|.++|+.+... .+.+..++..+..++.+.|++++|.+.|+++.+ .+..++..+
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 100 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQR 100 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 345667888999999999999999999999976 456789999999999999999999999999873 355678999
Q ss_pred HHHHHcccChhHHHHHHHHHHHhhcCCccccchH---HHHHHH------------HHHhhhccchhhHHHHHHHHHHcCC
Q 044786 84 IVGYVDVADYQECITLFAEMMKRKKGHMLLVFPA---WIIVCV------------LKACVCTMNMELGKQVHGLLFKLGS 148 (340)
Q Consensus 84 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~---~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~ 148 (340)
...|.+.|++++|.+.|+++.+.. +.+. ..+..+ ...+...|++++|...++.+.+...
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 174 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKSN------PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV 174 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC------CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 999999999999999999998773 3333 555555 4448889999999999999998764
Q ss_pred CCchhHHHHHHHHHHhhcCHHHHHHHHHHccc---CChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCChhh-HHHH
Q 044786 149 SRNISLTGSLINFYGKFRCLEDADFVFSQLKR---HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYT-FSSV 224 (340)
Q Consensus 149 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t-~~~l 224 (340)
. +..++..+..+|.+.|++++|.+.|+++.+ .+..+|..+...|...|++++|...|+++.+. .|+... +..+
T Consensus 175 ~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~ 251 (450)
T 2y4t_A 175 W-DAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHY 251 (450)
T ss_dssp T-CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred C-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHH
Confidence 3 778899999999999999999999999863 47789999999999999999999999999864 455433 3333
Q ss_pred ------------HHhcccCCchhchHHHHHHHHHHhCCCcc-----HHHHHHHHHHHhccCCHHHHHHHHHHhhc--CCc
Q 044786 225 ------------LKACGGVDDDGNCGRQMHANIVKIGLESD-----EYVQCGLVDMYGKCRLLRDAERVFELIVD--KKN 285 (340)
Q Consensus 225 ------------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~ 285 (340)
...+...|++++ +...++.+.... |+ ...+..+...+.+.|++++|.+.++++.. +.+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~g~~~~-A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~ 328 (450)
T 2y4t_A 252 KQVKKLNKLIESAEELIRDGRYTD-ATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDN 328 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHH-HHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 678889999977 777777776643 33 45788999999999999999999999865 347
Q ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHHHHcCCccchhHH
Q 044786 286 IASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLI 324 (340)
Q Consensus 286 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~ 324 (340)
...|..+..+|...|++++|...|++..+. .|+....
T Consensus 329 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~ 365 (450)
T 2y4t_A 329 VNALKDRAEAYLIEEMYDEAIQDYETAQEH--NENDQQI 365 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcchHHH
Confidence 889999999999999999999999999864 5554433
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=3.4e-20 Score=162.06 Aligned_cols=318 Identities=10% Similarity=0.047 Sum_probs=256.6
Q ss_pred CCCcchhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCcCCc------ccH
Q 044786 7 PITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDF------NSW 80 (340)
Q Consensus 7 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~------~~~ 80 (340)
|.+...|..+...+...|++++|.+.|+.+.+. -+.+..++..+..+|.+.|++++|.+.|+++...++ ..+
T Consensus 57 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 134 (450)
T 2y4t_A 57 PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL--KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQ 134 (450)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHH
Confidence 446778899999999999999999999999987 345688999999999999999999999999875433 455
Q ss_pred HHH------------HHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCC
Q 044786 81 AVM------------IVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGS 148 (340)
Q Consensus 81 ~~l------------i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 148 (340)
..+ ...+...|++++|++.|+++.+.. +.+..++..+...+.+.|++++|.+.++.+.+...
T Consensus 135 ~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 208 (450)
T 2y4t_A 135 SQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC------VWDAELRELRAECFIKEGEPRKAISDLKAASKLKN 208 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 555 344889999999999999999884 55778899999999999999999999999988753
Q ss_pred CCchhHHHHHHHHHHhhcCHHHHHHHHHHccc--C-ChhhHHHH------------HHHHhccCchhHHHHHHHHHhhcc
Q 044786 149 SRNISLTGSLINFYGKFRCLEDADFVFSQLKR--H-NTVVWTAK------------IVNNCREGHFHQVFNDFKEMGRER 213 (340)
Q Consensus 149 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l------------i~~~~~~~~~~~a~~~~~~m~~~~ 213 (340)
.+..++..+...|...|++++|...|+++.+ | +...+..+ ...+...|++++|...|+++.+.
T Consensus 209 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~- 286 (450)
T 2y4t_A 209 -DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT- 286 (450)
T ss_dssp -SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-
T ss_pred -CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-
Confidence 3678999999999999999999999999863 2 34444444 78999999999999999999874
Q ss_pred cCCC-----hhhHHHHHHhcccCCchhchHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhc-CC-cH
Q 044786 214 IKKN-----SYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD-KK-NI 286 (340)
Q Consensus 214 ~~p~-----~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-~~-~~ 286 (340)
.|+ ...+..+...+.+.|++++ +...++.+.+.. +.+..+|..+..+|...|++++|.+.|+++.. .| +.
T Consensus 287 -~p~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 363 (450)
T 2y4t_A 287 -EPSIAEYTVRSKERICHCFSKDEKPVE-AIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQ 363 (450)
T ss_dssp -CCSSHHHHHHHHHHHHHHHHTTTCHHH-HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCH
T ss_pred -CCcchHHHHHHHHHHHHHHHHCCCHHH-HHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchH
Confidence 455 3467888889999999977 777777766653 44789999999999999999999999999976 34 55
Q ss_pred HHHHHHHHH------------HHHcC-----chHHHHHHHHHHHHcCCccc-----------hhHHHHHHHHhhhcCccc
Q 044786 287 ASWNAMLVG------------YIRNG-----LYVEATKFLYLMKASGIQIQ-----------ESLINDLRIACSSISASK 338 (340)
Q Consensus 287 ~~~~~li~~------------~~~~~-----~~~~a~~~~~~m~~~g~~~~-----------~~t~~~ll~a~~~~g~~~ 338 (340)
..+..+..+ |...| +.+++.+.|+++... ..|| ...|..+-.++..+|++.
T Consensus 364 ~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~-~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~ 442 (450)
T 2y4t_A 364 QIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQ-WHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPE 442 (450)
T ss_dssp HHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHH-SCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGG
T ss_pred HHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHH-hCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHH
Confidence 666666533 33334 566778888874322 1222 348888999999988865
No 9
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.88 E-value=4.4e-19 Score=149.94 Aligned_cols=309 Identities=9% Similarity=-0.010 Sum_probs=250.2
Q ss_pred CcchhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCc--C-CcccHHHHHH
Q 044786 9 TTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL--R-DFNSWAVMIV 85 (340)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~ 85 (340)
++..+..+...+...|++++|.+.|+.+.+. .+.+...+..+...+...|++++|.+.|+...+ | +...|..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 4567788889999999999999999999987 455788999999999999999999999998873 3 5567889999
Q ss_pred HHHcccChhHHHHHHHHHHHhhcCCcccc---chHHHHHHH------------HHHhhhccchhhHHHHHHHHHHcCCCC
Q 044786 86 GYVDVADYQECITLFAEMMKRKKGHMLLV---FPAWIIVCV------------LKACVCTMNMELGKQVHGLLFKLGSSR 150 (340)
Q Consensus 86 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~---~~~~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~ 150 (340)
.+...|++++|.+.|++..+.. + .+...+..+ ...+...|++++|.+.++.+.+....
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~- 152 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSN------PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVW- 152 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred HHHHcCChHHHHHHHHHHHhcC------CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-
Confidence 9999999999999999998773 2 244455444 57888999999999999999987643
Q ss_pred chhHHHHHHHHHHhhcCHHHHHHHHHHccc---CChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCCh-hhHH----
Q 044786 151 NISLTGSLINFYGKFRCLEDADFVFSQLKR---HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS-YTFS---- 222 (340)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~t~~---- 222 (340)
+...+..+...+...|++++|...+++..+ .+..++..+...+...|++++|...|++..+. .|+. ..+.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~ 230 (359)
T 3ieg_A 153 DAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQ 230 (359)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CccchHHHHHHHH
Confidence 678899999999999999999999999764 36778999999999999999999999999875 3442 2222
Q ss_pred --------HHHHhcccCCchhchHHHHHHHHHHhCCCccH----HHHHHHHHHHhccCCHHHHHHHHHHhhc-CC-cHHH
Q 044786 223 --------SVLKACGGVDDDGNCGRQMHANIVKIGLESDE----YVQCGLVDMYGKCRLLRDAERVFELIVD-KK-NIAS 288 (340)
Q Consensus 223 --------~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~A~~~~~~~~~-~~-~~~~ 288 (340)
.+...+...|++++ +...++........ +. ..+..+...|.+.|++++|.+.+++... .| +..+
T Consensus 231 ~~~~~~~~~~a~~~~~~~~~~~-A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 308 (359)
T 3ieg_A 231 VKKLNKLIESAEELIRDGRYTD-ATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNA 308 (359)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHH-HHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHH
Confidence 22555788999977 77777766665422 22 3355678899999999999999999876 34 7889
Q ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHcCCccc-hhHHHHHHHHhh
Q 044786 289 WNAMLVGYIRNGLYVEATKFLYLMKASGIQIQ-ESLINDLRIACS 332 (340)
Q Consensus 289 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~t~~~ll~a~~ 332 (340)
|..+...|.+.|++++|.+.|++..+. .|+ ......+..+..
T Consensus 309 ~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 309 LKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHHH
Confidence 999999999999999999999999866 455 344444444443
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.87 E-value=1.8e-19 Score=159.93 Aligned_cols=322 Identities=11% Similarity=-0.029 Sum_probs=245.0
Q ss_pred CCcchhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCcCCc----------
Q 044786 8 ITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDF---------- 77 (340)
Q Consensus 8 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---------- 77 (340)
|++..|..+...+.+.|++++|.+.++.+.+. .+.+...+..+..++.+.|++++|...|+.+...+.
T Consensus 37 p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 114 (514)
T 2gw1_A 37 EDPVFYSNLSACYVSVGDLKKVVEMSTKALEL--KPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPML 114 (514)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHH
T ss_pred ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhcc--ChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHH
Confidence 67788888888888899999999999888877 345677888888888999999999888887642111
Q ss_pred ------------------------------------------------------------------------ccHHHHHH
Q 044786 78 ------------------------------------------------------------------------NSWAVMIV 85 (340)
Q Consensus 78 ------------------------------------------------------------------------~~~~~li~ 85 (340)
..+.....
T Consensus 115 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (514)
T 2gw1_A 115 ERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGL 194 (514)
T ss_dssp HHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHH
Confidence 11122222
Q ss_pred HHH---cccChhHHHHHHHHHHH-----hhcCCcc---ccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhH
Q 044786 86 GYV---DVADYQECITLFAEMMK-----RKKGHML---LVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISL 154 (340)
Q Consensus 86 ~~~---~~g~~~~a~~~~~~m~~-----~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 154 (340)
.+. +.|++++|...|+++.+ ....+.. .+.+..++..+...+...|++++|...++.+.+.... ...
T Consensus 195 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~ 272 (514)
T 2gw1_A 195 SNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNS 272 (514)
T ss_dssp HHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHH
T ss_pred HHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHH
Confidence 233 37888899999888887 2100000 0334568888889999999999999999999888655 778
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHcccC---ChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCChhhHHHHHHhcccC
Q 044786 155 TGSLINFYGKFRCLEDADFVFSQLKRH---NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGV 231 (340)
Q Consensus 155 ~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 231 (340)
+..+...|...|++++|...++++.+. +..++..+...+...|++++|...+++..+.. +.+...+..+...+...
T Consensus 273 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 351 (514)
T 2gw1_A 273 YIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRE 351 (514)
T ss_dssp HHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHc
Confidence 888999999999999999999987643 56778888999999999999999999988753 22456788888889999
Q ss_pred CchhchHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhcC-C---c----HHHHHHHHHHHHH---cC
Q 044786 232 DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK-K---N----IASWNAMLVGYIR---NG 300 (340)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-~---~----~~~~~~li~~~~~---~~ 300 (340)
|++++ +...++...+.. +.+..++..+...|.+.|++++|.+.++++... | + ...|..+...|.. .|
T Consensus 352 ~~~~~-A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 429 (514)
T 2gw1_A 352 NKFDD-CETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVE 429 (514)
T ss_dssp TCHHH-HHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTT
T ss_pred CCHHH-HHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcC
Confidence 99877 777777666543 346678888899999999999999999887651 2 2 3388888889999 89
Q ss_pred chHHHHHHHHHHHHcCCccchhHHHHHHHHhhhcCcc
Q 044786 301 LYVEATKFLYLMKASGIQIQESLINDLRIACSSISAS 337 (340)
Q Consensus 301 ~~~~a~~~~~~m~~~g~~~~~~t~~~ll~a~~~~g~~ 337 (340)
++++|.+.+++..... +.+..++..+-..+...|+.
T Consensus 430 ~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~ 465 (514)
T 2gw1_A 430 NFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDI 465 (514)
T ss_dssp HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCH
Confidence 9999999999987764 23456667777777777653
No 11
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.86 E-value=6.6e-19 Score=147.21 Aligned_cols=271 Identities=11% Similarity=-0.008 Sum_probs=130.8
Q ss_pred CCCcchhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCc---CCcccHHHH
Q 044786 7 PITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL---RDFNSWAVM 83 (340)
Q Consensus 7 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l 83 (340)
+.++..+......+...|++++|.++|+.+.+. .+.+...+..++..+.+.|++++|...++++.+ .+...|..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEK--DPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHH
Confidence 344444445555555555555555555555544 122333333444444555555555555554431 133344445
Q ss_pred HHHHHccc-ChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 044786 84 IVGYVDVA-DYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFY 162 (340)
Q Consensus 84 i~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 162 (340)
...+...| ++++|.+.|++..+.. +.+...+..+...+...|++++|.+.++...+.... +...+..+...|
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~ 169 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE------KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEY 169 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC------TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC------CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHH
Confidence 55555555 5555555555554442 223344445555555555555555555555444322 223333444455
Q ss_pred HhhcCHHHHHHHHHHcccC---ChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCChhhHHHHHHhcccCCchhchHH
Q 044786 163 GKFRCLEDADFVFSQLKRH---NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGR 239 (340)
Q Consensus 163 ~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~ 239 (340)
...|++++|.+.+++..+. +...+..+...+...|++++|...+++..+..... ++
T Consensus 170 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~------ 228 (330)
T 3hym_B 170 GLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAI---------------GN------ 228 (330)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTT---------------SC------
T ss_pred HHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhc---------------cc------
Confidence 5555555555555544321 33344444455555555555555554443321000 00
Q ss_pred HHHHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhc--CCcHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Q 044786 240 QMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD--KKNIASWNAMLVGYIRNGLYVEATKFLYLMKA 314 (340)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 314 (340)
....+.+..++..+...|.+.|++++|.+.+++... +.+...|..+...|.+.|++++|.+.|++..+
T Consensus 229 -------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 229 -------EVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp -------SCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred -------cccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 000122345566666666666666666666666554 23455666666666666666666666666543
No 12
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.86 E-value=1.2e-18 Score=145.58 Aligned_cols=250 Identities=14% Similarity=0.022 Sum_probs=144.0
Q ss_pred cccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHH
Q 044786 77 FNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTG 156 (340)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 156 (340)
...+..+...+...|++++|+++|+++.+.. +.+...+..++..+...|++++|..+++.+.+.... +...+.
T Consensus 22 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 94 (330)
T 3hym_B 22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKD------PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWF 94 (330)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHH
Confidence 3344444444444455555555555544442 222233333444444445555555555544443322 334444
Q ss_pred HHHHHHHhhc-CHHHHHHHHHHcccC---ChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCChhhHHHHHHhcccCC
Q 044786 157 SLINFYGKFR-CLEDADFVFSQLKRH---NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVD 232 (340)
Q Consensus 157 ~l~~~~~~~~-~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~ 232 (340)
.+...+...| ++++|...|++..+. +...|..+...+...|++++|...+++..+.. +.+...+..+...+...|
T Consensus 95 ~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~ 173 (330)
T 3hym_B 95 AVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTN 173 (330)
T ss_dssp HHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHh
Confidence 4455555555 555555555544321 33445555555555555555555555555432 112333444555555555
Q ss_pred chhchHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhc-----------CCcHHHHHHHHHHHHHcCc
Q 044786 233 DDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD-----------KKNIASWNAMLVGYIRNGL 301 (340)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-----------~~~~~~~~~li~~~~~~~~ 301 (340)
++++ +...++...+.. +.+..++..+...|.+.|++++|...+++... +.+..+|..+...|.+.|+
T Consensus 174 ~~~~-A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 251 (330)
T 3hym_B 174 NSKL-AERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK 251 (330)
T ss_dssp CHHH-HHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC
T ss_pred hHHH-HHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC
Confidence 5544 444444444332 23567778888888999999999999988765 2245789999999999999
Q ss_pred hHHHHHHHHHHHHcCCccchhHHHHHHHHhhhcCcc
Q 044786 302 YVEATKFLYLMKASGIQIQESLINDLRIACSSISAS 337 (340)
Q Consensus 302 ~~~a~~~~~~m~~~g~~~~~~t~~~ll~a~~~~g~~ 337 (340)
+++|...+++..... +.+...+..+-..+...|+.
T Consensus 252 ~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~ 286 (330)
T 3hym_B 252 YAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNF 286 (330)
T ss_dssp HHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccH
Confidence 999999999998764 23566777777777777653
No 13
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.85 E-value=7.9e-19 Score=155.86 Aligned_cols=321 Identities=8% Similarity=-0.090 Sum_probs=254.0
Q ss_pred cchhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCc---CCcccHHHHHHH
Q 044786 10 TDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL---RDFNSWAVMIVG 86 (340)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~ 86 (340)
...+......+.+.|++++|.+.|+.+... . |+...+..+..++.+.|++++|.+.|+.+.+ .+..+|..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALEL-K--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHH-C--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhc-C--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHH
Confidence 345677788899999999999999999988 3 7999999999999999999999999998873 355678999999
Q ss_pred HHcccChhHHHHHHHHHHHhhcCCcc------------------------------------------------c-----
Q 044786 87 YVDVADYQECITLFAEMMKRKKGHML------------------------------------------------L----- 113 (340)
Q Consensus 87 ~~~~g~~~~a~~~~~~m~~~~~~~~~------------------------------------------------~----- 113 (340)
+...|++++|...|+++...+..... .
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 99999999999999998776310000 0
Q ss_pred --------------------cchHHHHHHHHHHhh---hccchhhHHHHHHHHHH-----cCC--------CCchhHHHH
Q 044786 114 --------------------VFPAWIIVCVLKACV---CTMNMELGKQVHGLLFK-----LGS--------SRNISLTGS 157 (340)
Q Consensus 114 --------------------~~~~~~~~~ll~~~~---~~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~~~ 157 (340)
+.+...+......+. +.|++++|..+++.+.+ ..- +.+..++..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 011333333333333 38999999999999988 311 123567888
Q ss_pred HHHHHHhhcCHHHHHHHHHHccc--CChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCChhhHHHHHHhcccCCchh
Q 044786 158 LINFYGKFRCLEDADFVFSQLKR--HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDG 235 (340)
Q Consensus 158 l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~ 235 (340)
+...+...|++++|...|+++.+ |+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|+++
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 321 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYD 321 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHH
Confidence 89999999999999999998753 346778899999999999999999999998753 235677888889999999997
Q ss_pred chHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhc--CCcHHHHHHHHHHHHHcCchHHHHHHHHHHH
Q 044786 236 NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD--KKNIASWNAMLVGYIRNGLYVEATKFLYLMK 313 (340)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 313 (340)
+ +...++...... +.+...+..+...|.+.|++++|.+.++++.. +.+...|..+...|.+.|++++|...++++.
T Consensus 322 ~-A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 322 Q-AGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp H-HHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 7 777777776653 33677889999999999999999999999876 3467889999999999999999999999987
Q ss_pred HcCCc-cc----hhHHHHHHHHhhh---cCc
Q 044786 314 ASGIQ-IQ----ESLINDLRIACSS---ISA 336 (340)
Q Consensus 314 ~~g~~-~~----~~t~~~ll~a~~~---~g~ 336 (340)
...-. ++ ...+..+-..+.. .|+
T Consensus 400 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 430 (514)
T 2gw1_A 400 ELENKLDGIYVGIAPLVGKATLLTRNPTVEN 430 (514)
T ss_dssp HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTH
T ss_pred HhhhccchHHHHHHHHHHHHHHHhhhhhcCC
Confidence 65321 11 2267777777766 554
No 14
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.82 E-value=7.5e-17 Score=143.97 Aligned_cols=298 Identities=9% Similarity=-0.063 Sum_probs=189.1
Q ss_pred CCCcchhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcC-cCC---------
Q 044786 7 PITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMP-LRD--------- 76 (340)
Q Consensus 7 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~-~~~--------- 76 (340)
|.++..|..+...+.+.|++++|.+.++.+... -+.+...+..+..++...|++++|.+.|+.+. .|+
T Consensus 56 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 133 (537)
T 3fp2_A 56 PNEPVFYSNISACYISTGDLEKVIEFTTKALEI--KPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPM 133 (537)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC-----------CH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHH
Confidence 345677778888888888888888888888876 24467778888888888888888877764331 000
Q ss_pred --------------------------------------------------------------------------------
Q 044786 77 -------------------------------------------------------------------------------- 76 (340)
Q Consensus 77 -------------------------------------------------------------------------------- 76 (340)
T Consensus 134 ~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 213 (537)
T 3fp2_A 134 LERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLV 213 (537)
T ss_dssp HHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHH
Confidence
Q ss_pred -----------------------------cccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHh
Q 044786 77 -----------------------------FNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKAC 127 (340)
Q Consensus 77 -----------------------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~ 127 (340)
..++..+...+...|++++|.+.|++..+. .|+..++..+...+
T Consensus 214 a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~l~~~~ 286 (537)
T 3fp2_A 214 ANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL-------HPTPNSYIFLALTL 286 (537)
T ss_dssp HHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc-------CCCchHHHHHHHHH
Confidence 001333334455566666666666666665 34456666666777
Q ss_pred hhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHccc---CChhhHHHHHHHHhccCchhHHHH
Q 044786 128 VCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR---HNTVVWTAKIVNNCREGHFHQVFN 204 (340)
Q Consensus 128 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~ 204 (340)
...|++++|...++.+.+.... +..++..+...|...|++++|...|++..+ .+...|..+...+...|++++|..
T Consensus 287 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 365 (537)
T 3fp2_A 287 ADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEA 365 (537)
T ss_dssp CCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 7777777777777766665433 455666677777777777777777766542 245566667777777777777777
Q ss_pred HHHHHhhcccCCChhhHHHHHHhcccCCchhchHHHHHHHHHHhCCC-c----cHHHHHHHHHHHhcc----------CC
Q 044786 205 DFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLE-S----DEYVQCGLVDMYGKC----------RL 269 (340)
Q Consensus 205 ~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~li~~~~~~----------~~ 269 (340)
.+++..+.. +.+...+..+...+...|++++ +...++...+.... + ....+..+...|.+. |+
T Consensus 366 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 443 (537)
T 3fp2_A 366 FFNETKLKF-PTLPEVPTFFAEILTDRGDFDT-AIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEK 443 (537)
T ss_dssp HHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHH-HHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHH
T ss_pred HHHHHHHhC-CCChHHHHHHHHHHHHhCCHHH-HHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhH
Confidence 777776642 2234456666666777777755 55555444432210 0 111233334455555 77
Q ss_pred HHHHHHHHHHhhc--CCcHHHHHHHHHHHHHcCchHHHHHHHHHHHHcC
Q 044786 270 LRDAERVFELIVD--KKNIASWNAMLVGYIRNGLYVEATKFLYLMKASG 316 (340)
Q Consensus 270 ~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 316 (340)
+++|...|++... +.+...|..+...|.+.|++++|.+.|++..+..
T Consensus 444 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 444 FNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 7777777776654 2356667777777777777777777777776553
No 15
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.82 E-value=2.1e-18 Score=146.58 Aligned_cols=254 Identities=9% Similarity=0.005 Sum_probs=120.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHhhcCc---CCcccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHH
Q 044786 48 FLNRLLLMHVSCGQLDTARQLFDEMPL---RDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVL 124 (340)
Q Consensus 48 ~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll 124 (340)
.+..+...+.+.|++++|...|+++.+ .+..+|..+...+...|++++|++.|+++.+.. +.+..++..+.
T Consensus 66 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------~~~~~~~~~l~ 139 (368)
T 1fch_A 66 QPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK------PDNQTALMALA 139 (368)
T ss_dssp SHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC------CCCHHHHHHHH
Confidence 344445555555555555555555442 123344555555555555555555555555542 23444555555
Q ss_pred HHhhhccchhhHHHHHHHHHHcCCCCchhHHHH--------------HHHHHHhhcCHHHHHHHHHHccc--C---Chhh
Q 044786 125 KACVCTMNMELGKQVHGLLFKLGSSRNISLTGS--------------LINFYGKFRCLEDADFVFSQLKR--H---NTVV 185 (340)
Q Consensus 125 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--------------l~~~~~~~~~~~~a~~~~~~~~~--~---~~~~ 185 (340)
..+...|++++|...++.+.+............ .+..+...|++++|...|+++.+ | +..+
T Consensus 140 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 219 (368)
T 1fch_A 140 VSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDV 219 (368)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHH
Confidence 555555555555555555554432211111100 12222255555555555555431 1 2344
Q ss_pred HHHHHHHHhccCchhHHHHHHHHHhhcccCCChhhHHHHHHhcccCCchhchHHHHHHHHHHhCCCccHHHHHHHHHHHh
Q 044786 186 WTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYG 265 (340)
Q Consensus 186 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 265 (340)
+..+...|...|++++|...|++..+.. +.+...+..+...+...|++++ +...++...+.. +.+..++..+...|.
T Consensus 220 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~al~~~-~~~~~~~~~l~~~~~ 296 (368)
T 1fch_A 220 QCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEE-AVAAYRRALELQ-PGYIRSRYNLGISCI 296 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH-HHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 5555555555555555555555554431 1123445555555555555544 444444443331 223445555555555
Q ss_pred ccCCHHHHHHHHHHhhc-CC-c-----------HHHHHHHHHHHHHcCchHHHHHHHH
Q 044786 266 KCRLLRDAERVFELIVD-KK-N-----------IASWNAMLVGYIRNGLYVEATKFLY 310 (340)
Q Consensus 266 ~~~~~~~A~~~~~~~~~-~~-~-----------~~~~~~li~~~~~~~~~~~a~~~~~ 310 (340)
+.|++++|...|++... .| + ..+|..+..+|...|++++|..+++
T Consensus 297 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 297 NLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred HCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 55555555555555443 11 1 3455555555555555555555443
No 16
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.81 E-value=2e-20 Score=169.88 Aligned_cols=117 Identities=11% Similarity=0.116 Sum_probs=79.2
Q ss_pred hhHHHHHHHHHHhhcCHHHHHHHHHHcc-------cCChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCChhhHHHH
Q 044786 152 ISLTGSLINFYGKFRCLEDADFVFSQLK-------RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSV 224 (340)
Q Consensus 152 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~l 224 (340)
..||++||++||+.|++++|.++|++|. .||++|||+||.+||+.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 4467777777777777777777775543 356777777777777777777777777777777777777777777
Q ss_pred HHhcccCCchhchHHHHHHHHHHhCCCccHHHHHHHHHHHhccC
Q 044786 225 LKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCR 268 (340)
Q Consensus 225 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 268 (340)
|.++++.|+..+.+..+++.|.+.|+.||..+|++++.++.+.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~ 250 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT 250 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH
Confidence 77777766643446667777777777777777776665554443
No 17
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.81 E-value=1.2e-17 Score=141.96 Aligned_cols=256 Identities=9% Similarity=-0.059 Sum_probs=166.8
Q ss_pred CcchhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCc---CCcccHHHHHH
Q 044786 9 TTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL---RDFNSWAVMIV 85 (340)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~ 85 (340)
+...+..+...+.+.|++++|.+.|+.+... .+.+..++..+...+.+.|++++|.+.|++..+ .+..+|..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQ--DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 4455777888888888888888888888876 345678888888888888888888888887762 34567888888
Q ss_pred HHHcccChhHHHHHHHHHHHhhcCCccccch-----------HHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCC-chh
Q 044786 86 GYVDVADYQECITLFAEMMKRKKGHMLLVFP-----------AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSR-NIS 153 (340)
Q Consensus 86 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-----------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~ 153 (340)
.|...|++++|++.|+++.+.. |+ ...+..+...+...|++++|.+.++.+.+..... +..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 214 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN-------PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPD 214 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-------HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHH
T ss_pred HHHccccHHHHHHHHHHHHHhC-------ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHH
Confidence 8888888888888888888762 32 1223344667777777888888877777665331 466
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHccc---CChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCChhhHHHHHHhccc
Q 044786 154 LTGSLINFYGKFRCLEDADFVFSQLKR---HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230 (340)
Q Consensus 154 ~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 230 (340)
++..+...|...|++++|...|++..+ .+..+|+.+..+|...|++++|...|++..+. .|+
T Consensus 215 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~------------- 279 (365)
T 4eqf_A 215 LQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEI--QPG------------- 279 (365)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-------------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC-------------
Confidence 677777777777777777777776542 24556777777777777777777777766653 232
Q ss_pred CCchhchHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhc-CC-------------cHHHHHHHHHHH
Q 044786 231 VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD-KK-------------NIASWNAMLVGY 296 (340)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-~~-------------~~~~~~~li~~~ 296 (340)
+..++..+...|.+.|++++|.+.|++... .| +...|..+..++
T Consensus 280 ----------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 337 (365)
T 4eqf_A 280 ----------------------FIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIAL 337 (365)
T ss_dssp ----------------------CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHH
T ss_pred ----------------------chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHH
Confidence 233444455555555555555555555443 11 244566666666
Q ss_pred HHcCchHHHHHHHH
Q 044786 297 IRNGLYVEATKFLY 310 (340)
Q Consensus 297 ~~~~~~~~a~~~~~ 310 (340)
...|+.+.+.++.+
T Consensus 338 ~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 338 SLMDQPELFQAANL 351 (365)
T ss_dssp HHHTCHHHHHHHHT
T ss_pred HHcCcHHHHHHHHH
Confidence 66666666555544
No 18
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.81 E-value=4.8e-17 Score=145.22 Aligned_cols=318 Identities=8% Similarity=-0.065 Sum_probs=207.5
Q ss_pred cchhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCc---CCcccHHHHHHH
Q 044786 10 TDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL---RDFNSWAVMIVG 86 (340)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~ 86 (340)
...|..+...+.+.|++++|.+.|+.+... .+.+...+..+..++.+.|++++|.+.|++..+ .+..++..+...
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIEL--DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 456778888899999999999999999987 355789999999999999999999999999873 355678888999
Q ss_pred HHcccChhHHHHHHHHHHHhhcCCc-------------------------------------------------------
Q 044786 87 YVDVADYQECITLFAEMMKRKKGHM------------------------------------------------------- 111 (340)
Q Consensus 87 ~~~~g~~~~a~~~~~~m~~~~~~~~------------------------------------------------------- 111 (340)
+...|++++|.+.|+.+.... ...
T Consensus 103 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVLSLNG-DFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS 181 (537)
T ss_dssp HHHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHhcCC-CCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHH
Confidence 999999999998885331100 000
Q ss_pred ------------------------------------------------cccch--------HHHHHHHHHHhhhccchhh
Q 044786 112 ------------------------------------------------LLVFP--------AWIIVCVLKACVCTMNMEL 135 (340)
Q Consensus 112 ------------------------------------------------~~~~~--------~~~~~~ll~~~~~~~~~~~ 135 (340)
...|+ ..++..+...+...|++++
T Consensus 182 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 261 (537)
T 3fp2_A 182 SVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLD 261 (537)
T ss_dssp TSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHH
Confidence 00111 1234444455556666677
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHccc---CChhhHHHHHHHHhccCchhHHHHHHHHHhhc
Q 044786 136 GKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR---HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRE 212 (340)
Q Consensus 136 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 212 (340)
|...++...+... +...+..+...|...|++++|...|++..+ .+..+|..+...+...|++++|...|++..+.
T Consensus 262 A~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 339 (537)
T 3fp2_A 262 AQVLLQESINLHP--TPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL 339 (537)
T ss_dssp HHHHHHHHHHHCC--CHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC--CchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 7777766666543 355666666677777777777777766542 24556666777777777777777777777664
Q ss_pred ccCCChhhHHHHHHhcccCCchhchHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhcC-C-------
Q 044786 213 RIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK-K------- 284 (340)
Q Consensus 213 ~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-~------- 284 (340)
. +.+...+..+...+...|++++ +...++...+.. +.+...+..+...|...|++++|.+.|+++... |
T Consensus 340 ~-~~~~~~~~~la~~~~~~g~~~~-A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 416 (537)
T 3fp2_A 340 N-PENVYPYIQLACLLYKQGKFTE-SEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHV 416 (537)
T ss_dssp C-TTCSHHHHHHHHHHHHTTCHHH-HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSS
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHH
Confidence 2 1234556666666777777755 555555555442 334556666777777777777777777766541 1
Q ss_pred cHHHHHHHHHHHHHc----------CchHHHHHHHHHHHHcCCccchhHHHHHHHHhhhcCc
Q 044786 285 NIASWNAMLVGYIRN----------GLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336 (340)
Q Consensus 285 ~~~~~~~li~~~~~~----------~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~a~~~~g~ 336 (340)
....+..+...|.+. |++++|...|++..+.. +.+...+..+-..+...|+
T Consensus 417 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~ 477 (537)
T 3fp2_A 417 GIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEK 477 (537)
T ss_dssp TTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcc
Confidence 112233344555666 77777777777776553 2234556666666666654
No 19
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.80 E-value=1.4e-17 Score=141.47 Aligned_cols=253 Identities=12% Similarity=0.000 Sum_probs=203.2
Q ss_pred CcccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHH
Q 044786 76 DFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLT 155 (340)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 155 (340)
+...|..+...+.+.|++++|++.|+++.+.. +.+..++..+...+...|++++|...|+.+.+.... +..++
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~ 136 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD------PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKAL 136 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHH
Confidence 45568899999999999999999999999884 557789999999999999999999999999988643 67889
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHcccCC-------------hhhHHHHHHHHhccCchhHHHHHHHHHhhcccC-CChhhH
Q 044786 156 GSLINFYGKFRCLEDADFVFSQLKRHN-------------TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIK-KNSYTF 221 (340)
Q Consensus 156 ~~l~~~~~~~~~~~~a~~~~~~~~~~~-------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~t~ 221 (340)
..+...|...|++++|...|+++.+.+ ...+..+...+...|++++|...++++.+.... ++..++
T Consensus 137 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 216 (365)
T 4eqf_A 137 MALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQ 216 (365)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHH
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHH
Confidence 999999999999999999999986431 122344588899999999999999999886422 157788
Q ss_pred HHHHHhcccCCchhchHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhc-CC-cHHHHHHHHHHHHHc
Q 044786 222 SSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD-KK-NIASWNAMLVGYIRN 299 (340)
Q Consensus 222 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~li~~~~~~ 299 (340)
..+...+...|++++ +...++...+.. +.+..+|..+...|.+.|++++|.+.|++... .| +..+|..+...|.+.
T Consensus 217 ~~l~~~~~~~g~~~~-A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 294 (365)
T 4eqf_A 217 TGLGVLFHLSGEFNR-AIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINL 294 (365)
T ss_dssp HHHHHHHHHHTCHHH-HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHH-HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHC
Confidence 899999999999977 777777777653 44788999999999999999999999999876 34 688999999999999
Q ss_pred CchHHHHHHHHHHHHcCCc-----------cchhHHHHHHHHhhhcCcc
Q 044786 300 GLYVEATKFLYLMKASGIQ-----------IQESLINDLRIACSSISAS 337 (340)
Q Consensus 300 ~~~~~a~~~~~~m~~~g~~-----------~~~~t~~~ll~a~~~~g~~ 337 (340)
|++++|...|++..+..-. .+..++..+-.++...|..
T Consensus 295 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 343 (365)
T 4eqf_A 295 GAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQP 343 (365)
T ss_dssp TCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCH
T ss_pred CCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcH
Confidence 9999999999998765311 1356778887777777654
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.79 E-value=5.1e-17 Score=137.99 Aligned_cols=295 Identities=12% Similarity=0.008 Sum_probs=214.0
Q ss_pred ccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHH-HHhhcCc---C----CcccHHHHHHHHHcccChh
Q 044786 23 QKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQ-LFDEMPL---R----DFNSWAVMIVGYVDVADYQ 94 (340)
Q Consensus 23 ~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~-~~~~~~~---~----~~~~~~~li~~~~~~g~~~ 94 (340)
.+.++.+...|+.+.+. .|+ .+...|++++|.+ .|++... . +...+..+...+...|+++
T Consensus 14 ~~~~~~~~~~~~~~~~~---~~~---------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 81 (368)
T 1fch_A 14 VDFWDKLQAELEEMAKR---DAE---------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLP 81 (368)
T ss_dssp --------------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHH
T ss_pred cccHHHHHHHHHHHHcC---Cch---------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHH
Confidence 34455555666665544 122 2344588999998 8886542 1 3557889999999999999
Q ss_pred HHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHH
Q 044786 95 ECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFV 174 (340)
Q Consensus 95 ~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 174 (340)
+|...|+++.+.. +.+..++..+...+...|++++|...++.+.+.... +..++..+...|...|++++|.+.
T Consensus 82 ~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~ 154 (368)
T 1fch_A 82 NAVLLFEAAVQQD------PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEI 154 (368)
T ss_dssp HHHHHHHHHHHSC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhC------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999874 557778999999999999999999999999988643 778899999999999999999999
Q ss_pred HHHcccC---ChhhHHH---------------HHHHHhccCchhHHHHHHHHHhhcccCC-ChhhHHHHHHhcccCCchh
Q 044786 175 FSQLKRH---NTVVWTA---------------KIVNNCREGHFHQVFNDFKEMGRERIKK-NSYTFSSVLKACGGVDDDG 235 (340)
Q Consensus 175 ~~~~~~~---~~~~~~~---------------li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~~~~~ 235 (340)
|+++.+. +...+.. .+..+...|++++|...|+++.+..... +..++..+...+...|+++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~ 234 (368)
T 1fch_A 155 LRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYD 234 (368)
T ss_dssp HHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHH
Confidence 9997643 2222221 2334448999999999999998853221 4678888999999999997
Q ss_pred chHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhc--CCcHHHHHHHHHHHHHcCchHHHHHHHHHHH
Q 044786 236 NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD--KKNIASWNAMLVGYIRNGLYVEATKFLYLMK 313 (340)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 313 (340)
+ +...++...... +.+..++..+...|.+.|++++|.+.|++... +.+...|..+...|.+.|++++|...|++..
T Consensus 235 ~-A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 312 (368)
T 1fch_A 235 K-AVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEAL 312 (368)
T ss_dssp H-HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 7 777777776653 44678999999999999999999999999876 3467899999999999999999999999987
Q ss_pred HcCCcc----------chhHHHHHHHHhhhcCccc
Q 044786 314 ASGIQI----------QESLINDLRIACSSISASK 338 (340)
Q Consensus 314 ~~g~~~----------~~~t~~~ll~a~~~~g~~~ 338 (340)
...-.. ...++..+-.++...|..+
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 347 (368)
T 1fch_A 313 NMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSD 347 (368)
T ss_dssp HHHHTC------CCCCCHHHHHHHHHHHHHHTCGG
T ss_pred HhCCCCCCccccccchhhHHHHHHHHHHHHhCChH
Confidence 653211 1578888888998888754
No 21
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.79 E-value=8.2e-20 Score=165.95 Aligned_cols=147 Identities=11% Similarity=-0.031 Sum_probs=122.3
Q ss_pred hhhHHHHHHHHhccCchhHHHHHHHHHh---hcccCCChhhHHHHHHhcccCCchhchHHHHHHHHHHhCCCccHHHHHH
Q 044786 183 TVVWTAKIVNNCREGHFHQVFNDFKEMG---RERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCG 259 (340)
Q Consensus 183 ~~~~~~li~~~~~~~~~~~a~~~~~~m~---~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (340)
..|||++|.+||+.|++++|.++|++|. ..|+.||..|||++|.+||+.|++++ |..+++.|...|+.||..|||+
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~e-A~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKE-LVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHH-HHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHH-HHHHHHHHHHcCCCCcHHHHHH
Confidence 4589999999999999999999998875 46899999999999999999999977 9999999999999999999999
Q ss_pred HHHHHhccCCH-HHHHHHHHHhhc---CCcHHHHHHHHHHHHHcCchHHHHHHHHHHHHcCCccc------hhHHHHHHH
Q 044786 260 LVDMYGKCRLL-RDAERVFELIVD---KKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQ------ESLINDLRI 329 (340)
Q Consensus 260 li~~~~~~~~~-~~A~~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~------~~t~~~ll~ 329 (340)
||+++++.|+. ++|.++|++|.. .||..+|+.++.++.+. .+++..+++ .-++.|+ ..|...|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 99999999984 789999999987 48999999998766554 455555555 4466665 556666666
Q ss_pred HhhhcC
Q 044786 330 ACSSIS 335 (340)
Q Consensus 330 a~~~~g 335 (340)
-+++.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 666554
No 22
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.79 E-value=3.3e-16 Score=132.24 Aligned_cols=279 Identities=10% Similarity=0.037 Sum_probs=226.2
Q ss_pred CCCcchhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCcCCc------ccH
Q 044786 7 PITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDF------NSW 80 (340)
Q Consensus 7 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~------~~~ 80 (340)
|.++..+..+...+...|++++|.+.++.+.+. .+.+...+..+...+...|++++|.+.|+...+.++ ..+
T Consensus 34 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 111 (359)
T 3ieg_A 34 PDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL--KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAE 111 (359)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHH
Confidence 345678888999999999999999999999987 344778999999999999999999999999875443 234
Q ss_pred HHH------------HHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCC
Q 044786 81 AVM------------IVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGS 148 (340)
Q Consensus 81 ~~l------------i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 148 (340)
..+ ...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++...+...
T Consensus 112 ~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 185 (359)
T 3ieg_A 112 SQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC------VWDAELRELRAECFIKEGEPRKAISDLKAASKLKS 185 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC------CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 434 578889999999999999999884 55678899999999999999999999999998753
Q ss_pred CCchhHHHHHHHHHHhhcCHHHHHHHHHHcccC---ChhhHH------------HHHHHHhccCchhHHHHHHHHHhhcc
Q 044786 149 SRNISLTGSLINFYGKFRCLEDADFVFSQLKRH---NTVVWT------------AKIVNNCREGHFHQVFNDFKEMGRER 213 (340)
Q Consensus 149 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~------------~li~~~~~~~~~~~a~~~~~~m~~~~ 213 (340)
.+..++..+...|...|++++|...|++..+. +...+. .+...+.+.|++++|...+++..+..
T Consensus 186 -~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 264 (359)
T 3ieg_A 186 -DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE 264 (359)
T ss_dssp -CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred -CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 36788999999999999999999999987642 233332 23667889999999999999998853
Q ss_pred cCCChh-----hHHHHHHhcccCCchhchHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhc-CC-cH
Q 044786 214 IKKNSY-----TFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD-KK-NI 286 (340)
Q Consensus 214 ~~p~~~-----t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-~~-~~ 286 (340)
|+.. .+..+...+...|++++ +...++...+.. +.+..++..+...|.+.|++++|.+.|++... .| +.
T Consensus 265 --~~~~~~~~~~~~~la~~~~~~~~~~~-A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~ 340 (359)
T 3ieg_A 265 --PSVAEYTVRSKERICHCFSKDEKPVE-AIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQ 340 (359)
T ss_dssp --CSSHHHHHHHHHHHHHHHHHTTCHHH-HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred --CCchHHHHHHHHHHHHHHHHccCHHH-HHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Confidence 4432 24456678889999977 777777777653 44788999999999999999999999999886 34 46
Q ss_pred HHHHHHHHHHHH
Q 044786 287 ASWNAMLVGYIR 298 (340)
Q Consensus 287 ~~~~~li~~~~~ 298 (340)
..+..+..+...
T Consensus 341 ~~~~~l~~~~~~ 352 (359)
T 3ieg_A 341 QIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666655543
No 23
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.79 E-value=3.5e-17 Score=136.53 Aligned_cols=257 Identities=7% Similarity=-0.041 Sum_probs=173.1
Q ss_pred CcchhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCc---CCcccHHHHHH
Q 044786 9 TTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL---RDFNSWAVMIV 85 (340)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~ 85 (340)
+...+......+...|++++|.++|+.+.+. .+.+...+..+...+.+.|++++|.+.|++..+ .+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQA--APEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHH
Confidence 4556677788888999999999999999877 345778888888999999999999999988763 35557888888
Q ss_pred HHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHH--------------HH-HhhhccchhhHHHHHHHHHHcCCCC
Q 044786 86 GYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCV--------------LK-ACVCTMNMELGKQVHGLLFKLGSSR 150 (340)
Q Consensus 86 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~l--------------l~-~~~~~~~~~~a~~~~~~~~~~~~~~ 150 (340)
.+...|++++|.+.+++..... +.+...+..+ .. .+...|++++|.+.++.+.+....
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~- 170 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQ------PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN- 170 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTS------TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-
T ss_pred HHHHcCCHHHHHHHHHHHHHhC------CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-
Confidence 8999999999999999988773 1222222222 22 366667777777777777666533
Q ss_pred chhHHHHHHHHHHhhcCHHHHHHHHHHccc---CChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCChhhHHHHHHh
Q 044786 151 NISLTGSLINFYGKFRCLEDADFVFSQLKR---HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA 227 (340)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~ 227 (340)
+...+..+...|...|++++|...+++..+ .+..+|..+...+...|++++|...+++..+.. |+
T Consensus 171 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~---------- 238 (327)
T 3cv0_A 171 DAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN--PG---------- 238 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT----------
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CC----------
Confidence 556666667777777777777777766542 234556666666666666666666666665431 21
Q ss_pred cccCCchhchHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhc-CC-------------cHHHHHHHH
Q 044786 228 CGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD-KK-------------NIASWNAML 293 (340)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-~~-------------~~~~~~~li 293 (340)
+..++..+...|.+.|++++|.+.+++... .| +...|..+.
T Consensus 239 -------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~ 293 (327)
T 3cv0_A 239 -------------------------YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFR 293 (327)
T ss_dssp -------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHH
T ss_pred -------------------------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHH
Confidence 233445556666666666666666666544 12 355666677
Q ss_pred HHHHHcCchHHHHHHHHH
Q 044786 294 VGYIRNGLYVEATKFLYL 311 (340)
Q Consensus 294 ~~~~~~~~~~~a~~~~~~ 311 (340)
.++.+.|++++|..++++
T Consensus 294 ~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 294 MLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHHHTTCHHHHHHHTTC
T ss_pred HHHHhcCCHHHHHHHHHH
Confidence 777777777777666654
No 24
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.77 E-value=1.5e-16 Score=132.63 Aligned_cols=251 Identities=9% Similarity=-0.044 Sum_probs=178.9
Q ss_pred cccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHH
Q 044786 77 FNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTG 156 (340)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 156 (340)
...+..+...+...|++++|..+|+++.+.. +.+...+..+...+...|++++|.+.++.+.+.... +..++.
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~ 93 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA------PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHA 93 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-CHHHHH
Confidence 3455666666777777777777777776663 335556666677777777777777777777666432 455666
Q ss_pred HHHHHHHhhcCHHHHHHHHHHcccC---ChhhHHHH--------------HH-HHhccCchhHHHHHHHHHhhcccCCCh
Q 044786 157 SLINFYGKFRCLEDADFVFSQLKRH---NTVVWTAK--------------IV-NNCREGHFHQVFNDFKEMGRERIKKNS 218 (340)
Q Consensus 157 ~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l--------------i~-~~~~~~~~~~a~~~~~~m~~~~~~p~~ 218 (340)
.+...|...|++++|.+.++++.+. +...+..+ .. .+...|++++|...++++.+.. +.+.
T Consensus 94 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 172 (327)
T 3cv0_A 94 ALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDA 172 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCH
Confidence 6777777777777777777766532 22222222 22 3677888888888888887753 2356
Q ss_pred hhHHHHHHhcccCCchhchHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhc--CCcHHHHHHHHHHH
Q 044786 219 YTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD--KKNIASWNAMLVGY 296 (340)
Q Consensus 219 ~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~li~~~ 296 (340)
..+..+...+...|++++ +...++...+.. +.+..++..+...|...|++++|.+.|++... +.+..+|..+...|
T Consensus 173 ~~~~~la~~~~~~~~~~~-A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 250 (327)
T 3cv0_A 173 QLHASLGVLYNLSNNYDS-AAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSY 250 (327)
T ss_dssp HHHHHHHHHHHHTTCHHH-HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHH-HHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 677778888888888866 666666666543 34677889999999999999999999999875 34678899999999
Q ss_pred HHcCchHHHHHHHHHHHHcCCcc-----------chhHHHHHHHHhhhcCcc
Q 044786 297 IRNGLYVEATKFLYLMKASGIQI-----------QESLINDLRIACSSISAS 337 (340)
Q Consensus 297 ~~~~~~~~a~~~~~~m~~~g~~~-----------~~~t~~~ll~a~~~~g~~ 337 (340)
.+.|++++|.+.+++.....-.. +..++..+-.++...|..
T Consensus 251 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 302 (327)
T 3cv0_A 251 SNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRP 302 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCH
T ss_pred HHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCH
Confidence 99999999999999987764332 467888888888888764
No 25
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.77 E-value=1.1e-15 Score=125.28 Aligned_cols=245 Identities=8% Similarity=-0.011 Sum_probs=157.8
Q ss_pred HHhcCChhHHHHHHhhcCcCCcc----cHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhcc
Q 044786 56 HVSCGQLDTARQLFDEMPLRDFN----SWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTM 131 (340)
Q Consensus 56 ~~~~~~~~~a~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 131 (340)
....|++..|+..++.+...++. ..-.+.++|...|+++.|+..++. .. +|+..++..+...+...+
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~------~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SS------APELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TS------CHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cC------ChhHHHHHHHHHHHcCCC
Confidence 34556667777666665533322 234455666777777766665533 11 456666666667777777
Q ss_pred chhhHHHHHHHHHHcCCCC-chhHHHHHHHHHHhhcCHHHHHHHHHHcccCChhhHHHHHHHHhccCchhHHHHHHHHHh
Q 044786 132 NMELGKQVHGLLFKLGSSR-NISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMG 210 (340)
Q Consensus 132 ~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 210 (340)
+.++|.+.++.+...+..| +...+..+...|...|++++|.+.+++ ..+...+..+...+.+.|++++|...|+++.
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 7777777777776665444 344555566777777777777777777 4466677777777777788888888777777
Q ss_pred hcccCCChhhH---HHHHHhcccCCchhchHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhc-C-Cc
Q 044786 211 RERIKKNSYTF---SSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD-K-KN 285 (340)
Q Consensus 211 ~~~~~p~~~t~---~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-~-~~ 285 (340)
+. .|+.... ...+..+...|++++ +..+++.+.+. .+.++..++.+..++.+.|++++|.+.|++... . .+
T Consensus 158 ~~--~p~~~~~~l~~a~~~l~~~~~~~~e-A~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~ 233 (291)
T 3mkr_A 158 DQ--DEDATLTQLATAWVSLAAGGEKLQD-AYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGH 233 (291)
T ss_dssp HH--CTTCHHHHHHHHHHHHHHCTTHHHH-HHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hh--CcCcHHHHHHHHHHHHHhCchHHHH-HHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 65 3543211 112233334566655 66666666665 355777777788888888888888888877655 2 36
Q ss_pred HHHHHHHHHHHHHcCchHH-HHHHHHHHHHc
Q 044786 286 IASWNAMLVGYIRNGLYVE-ATKFLYLMKAS 315 (340)
Q Consensus 286 ~~~~~~li~~~~~~~~~~~-a~~~~~~m~~~ 315 (340)
..++..++..+...|+.++ +.++++++.+.
T Consensus 234 ~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 234 PETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 6677777777777887765 45677777655
No 26
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.75 E-value=3.4e-16 Score=128.44 Aligned_cols=271 Identities=7% Similarity=0.007 Sum_probs=207.6
Q ss_pred HHHhhhccchhhHHHHHHHHHhhcCCCCCH--HHHHHHHHHHHhcCChhHHHHHHhhcCcCCcccHHHHHHHHHcccChh
Q 044786 17 IKECTFQKDSAGAFELLNHIRKRVNIKPTL--LFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQ 94 (340)
Q Consensus 17 i~~~~~~~~~~~a~~~~~~m~~~~g~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 94 (340)
|+.....|+++.|+..++.... ..|+. .....+..+|...|+++.|+..++....++..++..+...+...++.+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~---~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP---SSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC---CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHHhccc---CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHH
Confidence 4556678999999998877653 34443 355667889999999999999888765556667888999999999999
Q ss_pred HHHHHHHHHHHhhcCCccccc-hHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHH
Q 044786 95 ECITLFAEMMKRKKGHMLLVF-PAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADF 173 (340)
Q Consensus 95 ~a~~~~~~m~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 173 (340)
+|++.++++... +. .| +...+..+...+.+.|++++|.+.++. ..+...+..+...|.+.|++++|.+
T Consensus 83 ~A~~~l~~ll~~--~~---~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~ 151 (291)
T 3mkr_A 83 AIVAELDREMSR--SV---DVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARK 151 (291)
T ss_dssp HHHHHHHHHHHS--CC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhc--cc---CCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999876 22 24 455677777999999999999999987 4577889999999999999999999
Q ss_pred HHHHccc--CChhhH---HHHHHHHhccCchhHHHHHHHHHhhcccCCChhhHHHHHHhcccCCchhchHHHHHHHHHHh
Q 044786 174 VFSQLKR--HNTVVW---TAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKI 248 (340)
Q Consensus 174 ~~~~~~~--~~~~~~---~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~ 248 (340)
.|+++.+ |+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++ +...++.....
T Consensus 152 ~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~e-A~~~l~~al~~ 229 (291)
T 3mkr_A 152 ELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEA-AEGVLQEALDK 229 (291)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHH-HHHHHHHHHHH
T ss_pred HHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHh
Confidence 9999874 332211 22334444569999999999999987 34567788999999999999987 77777777665
Q ss_pred CCCccHHHHHHHHHHHhccCCHHH-HHHHHHHhhc-CCcHHHHHHHHHHHHHcCchHHHHH
Q 044786 249 GLESDEYVQCGLVDMYGKCRLLRD-AERVFELIVD-KKNIASWNAMLVGYIRNGLYVEATK 307 (340)
Q Consensus 249 ~~~~~~~~~~~li~~~~~~~~~~~-A~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~ 307 (340)
. +-++.++..++..+...|+.++ +.++++++.. .|+... +.....+.+.++++..
T Consensus 230 ~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~---~~d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 230 D-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPF---IKEYRAKENDFDRLVL 286 (291)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChH---HHHHHHHHHHHHHHHH
Confidence 3 4478889999999999999876 6789888775 453322 2233445555555544
No 27
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.75 E-value=1.7e-18 Score=146.00 Aligned_cols=274 Identities=10% Similarity=0.105 Sum_probs=115.8
Q ss_pred chhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCcCCcccHHHHHHHHHcc
Q 044786 11 DMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDV 90 (340)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~ 90 (340)
.+.+.||. +.|++++|.++++++. ++.+|..|..++.+.|++++|++.|.+ .+|...|..++.++...
T Consensus 7 ~a~~~ll~---~~~~ld~A~~fae~~~-------~~~vWs~La~A~l~~g~~~eAIdsfik--a~D~~~y~~V~~~ae~~ 74 (449)
T 1b89_A 7 SAVQVLIE---HIGNLDRAYEFAERCN-------EPAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTS 74 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHH---HccCHHHHHHHHHhCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHc--CCCHHHHHHHHHHHHhC
Confidence 33444554 5678999999998883 235999999999999999999999965 46777999999999999
Q ss_pred cChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHH
Q 044786 91 ADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170 (340)
Q Consensus 91 g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 170 (340)
|++++|++.++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|++++
T Consensus 75 g~~EeAi~yl~~ark~-------~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yee 140 (449)
T 1b89_A 75 GNWEELVKYLQMARKK-------ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDA 140 (449)
T ss_dssp -----------------------------------------CHHHHTTTTT-------CC----------------CTTT
T ss_pred CCHHHHHHHHHHHHHh-------CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHH
Confidence 9999999988777765 5667889999999999999999998885 3677799999999999999999
Q ss_pred HHHHHHHcccCChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCChhhHHHHHHhcccCCchhchHHHHHHHHHHhCC
Q 044786 171 ADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGL 250 (340)
Q Consensus 171 a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (340)
|...|..+ ..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++. |...... +
T Consensus 141 A~~~Y~~a-----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~l-A~~~~l~-----L 203 (449)
T 1b89_A 141 AKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRL-AQMCGLH-----I 203 (449)
T ss_dssp HHHHHHHT-----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHH-HHHTTTT-----T
T ss_pred HHHHHHHh-----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHH-HHHHHHH-----H
Confidence 99999987 47999999999999999999999988 267899999999999999966 5332221 2
Q ss_pred CccHHHHHHHHHHHhccCCHHHHHHHHHHhhc--CCcHHHHHHHHHHHHHcCchHHHHHHHHHHHHcCCccchhHHHHHH
Q 044786 251 ESDEYVQCGLVDMYGKCRLLRDAERVFELIVD--KKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLR 328 (340)
Q Consensus 251 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll 328 (340)
...+.-...++..|.+.|++++|..+++.... +.....|+-|...|++-+ +++.++-++.-- +..-..-+|
T Consensus 204 ~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~-p~k~~ehl~~~~------~~ini~k~~ 276 (449)
T 1b89_A 204 VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHLELFW------SRVNIPKVL 276 (449)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHHHHHS------TTSCHHHHH
T ss_pred HhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHH------HHhcCcHHH
Confidence 33444455799999999999999999998875 346678888877787653 444443333221 222345567
Q ss_pred HHhhhc
Q 044786 329 IACSSI 334 (340)
Q Consensus 329 ~a~~~~ 334 (340)
++|.+.
T Consensus 277 ~~~~~~ 282 (449)
T 1b89_A 277 RAAEQA 282 (449)
T ss_dssp HHHHTT
T ss_pred HHHHHH
Confidence 777654
No 28
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.75 E-value=5.5e-18 Score=142.89 Aligned_cols=255 Identities=11% Similarity=0.023 Sum_probs=102.8
Q ss_pred CCcchhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCc--CCcccHHHHHH
Q 044786 8 ITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL--RDFNSWAVMIV 85 (340)
Q Consensus 8 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~ 85 (340)
+++..|..+..++.+.|++++|++.|.+. +|..+|..++..+...|++++|+..++...+ +++.+.+.++.
T Consensus 30 ~~~~vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~ 102 (449)
T 1b89_A 30 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIF 102 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHH
Confidence 44567888888888888888888888432 3666888888888888888888886665552 34566778888
Q ss_pred HHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhh
Q 044786 86 GYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165 (340)
Q Consensus 86 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 165 (340)
+|.+.|+++++.++++ .|+..+|..+...|...|.+++|..+|..+ ..|..+.+++.+.
T Consensus 103 ~Y~Klg~l~e~e~f~~------------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~L 161 (449)
T 1b89_A 103 ALAKTNRLAELEEFIN------------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHL 161 (449)
T ss_dssp ------CHHHHTTTTT------------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHc------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHh
Confidence 8888888888777663 355568888888888888888888888755 3678888888888
Q ss_pred cCHHHHHHHHHHcccCChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCChhhHHHHHHhcccCCchhchHHHHHHHH
Q 044786 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANI 245 (340)
Q Consensus 166 ~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~ 245 (340)
|++++|.+.++++ .++.+|..++.+|+..|+++.|......+. +.|+. ...++..|.+.|.+++ +..+++..
T Consensus 162 g~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~~ad~--l~~lv~~Yek~G~~eE-ai~lLe~a 233 (449)
T 1b89_A 162 GEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHADE--LEELINYYQDRGYFEE-LITMLEAA 233 (449)
T ss_dssp TCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT---TCHHH--HHHHHHHHHHTTCHHH-HHHHHHHH
T ss_pred ccHHHHHHHHHHc--CCchhHHHHHHHHHHcCcHHHHHHHHHHHH---hCHhh--HHHHHHHHHHCCCHHH-HHHHHHHH
Confidence 8888888888887 377788888888888888888855544322 23333 4457777888888876 55555554
Q ss_pred HHhCCCccHHHHHHHHHHHhcc--CCHHHHHHHHHHhhcCCcHHHHHHHHHHHHHcCchHHH
Q 044786 246 VKIGLESDEYVQCGLVDMYGKC--RLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEA 305 (340)
Q Consensus 246 ~~~~~~~~~~~~~~li~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 305 (340)
.... +-....|+-|-..|++- +++.+..+.|. .+-|+ ..+|++|....-|.+.
T Consensus 234 L~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~---~~ini---~k~~~~~~~~~~w~e~ 288 (449)
T 1b89_A 234 LGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW---SRVNI---PKVLRAAEQAHLWAEL 288 (449)
T ss_dssp TTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS---TTSCH---HHHHHHHHTTTCHHHH
T ss_pred hCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HHhcC---cHHHHHHHHHHHHHHH
Confidence 4333 34556666666666653 33444444433 22222 2456666654444443
No 29
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.70 E-value=1.9e-15 Score=118.51 Aligned_cols=196 Identities=9% Similarity=-0.006 Sum_probs=153.8
Q ss_pred CCCCcchhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCc--C-CcccHHH
Q 044786 6 LPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL--R-DFNSWAV 82 (340)
Q Consensus 6 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~ 82 (340)
+|+++..+..+...+.+.|++++|...|+...+. -+.+...+..+...+.+.|++++|+..|++..+ | +...+..
T Consensus 1 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~ 78 (217)
T 2pl2_A 1 MQTAEQNPLRLGVQLYALGRYDAALTLFERALKE--NPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMV 78 (217)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 4788889999999999999999999999999876 455788899999999999999999999998763 3 5557888
Q ss_pred HHHHHHcc-----------cChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCc
Q 044786 83 MIVGYVDV-----------ADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRN 151 (340)
Q Consensus 83 li~~~~~~-----------g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 151 (340)
+...+... |++++|+..|++..+.. +-+...+..+...+...|++++|...+++..+.. .+
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~------P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~ 150 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN------PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DT 150 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CC
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC------cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cc
Confidence 88899999 99999999999999884 4456788889999999999999999999999888 68
Q ss_pred hhHHHHHHHHHHhhcCHHHHHHHHHHccc--C-ChhhHHHHHHHHhccCchhHHHHHHHHHhh
Q 044786 152 ISLTGSLINFYGKFRCLEDADFVFSQLKR--H-NTVVWTAKIVNNCREGHFHQVFNDFKEMGR 211 (340)
Q Consensus 152 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 211 (340)
...+..+..+|...|++++|...|++..+ | +...+..+...+...|++++|+..|++...
T Consensus 151 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 151 PEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC----------------
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 88889999999999999999999998753 3 567788888999999999999998887653
No 30
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.67 E-value=1.4e-12 Score=115.20 Aligned_cols=177 Identities=12% Similarity=0.007 Sum_probs=87.8
Q ss_pred ccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHh----hcCHHHHHHHHHHcccC-ChhhHHHHHHHHhc----cCchh
Q 044786 130 TMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK----FRCLEDADFVFSQLKRH-NTVVWTAKIVNNCR----EGHFH 200 (340)
Q Consensus 130 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~ 200 (340)
.+++++|.+.|+...+.| +...+..+...|.. .+++++|...|++..+. +...+..+...|.. .++++
T Consensus 200 ~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~ 276 (490)
T 2xm6_A 200 ERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPL 276 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHH
T ss_pred CcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHH
Confidence 445555555555544443 23344444444443 44555555555554332 33344444444444 45555
Q ss_pred HHHHHHHHHhhcccCCChhhHHHHHHhcccC-----CchhchHHHHHHHHHHhCCCccHHHHHHHHHHHhccC---CHHH
Q 044786 201 QVFNDFKEMGRERIKKNSYTFSSVLKACGGV-----DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCR---LLRD 272 (340)
Q Consensus 201 ~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~ 272 (340)
+|+..|++..+.| +...+..+-..+... ++.++ +...++...+.+ +...+..+-..|.+.| ++++
T Consensus 277 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~-A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~ 349 (490)
T 2xm6_A 277 KALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQ-AISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKK 349 (490)
T ss_dssp HHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHH-HHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHH
T ss_pred HHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHH-HHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHH
Confidence 6666665555432 122233333333332 44434 444444444433 2334444444554434 5566
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHHHH----cCchHHHHHHHHHHHHcC
Q 044786 273 AERVFELIVDKKNIASWNAMLVGYIR----NGLYVEATKFLYLMKASG 316 (340)
Q Consensus 273 A~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g 316 (340)
|.+.|++.....++..+..|...|.. .+++++|+.+|++..+.|
T Consensus 350 A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~ 397 (490)
T 2xm6_A 350 AVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG 397 (490)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC
Confidence 66666666555556666666666666 566666666666666554
No 31
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.66 E-value=2.5e-14 Score=114.88 Aligned_cols=235 Identities=9% Similarity=-0.021 Sum_probs=144.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHhhcCc--CCcccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccch----HHH
Q 044786 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPL--RDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP----AWI 119 (340)
Q Consensus 46 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~----~~~ 119 (340)
...+..+...+...|++++|.+.|++..+ .+...|..+...+...|++++|++.+++..+..... .++ ..+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~ 81 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREM---RADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---TCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc---ccchHHHHHH
Confidence 34566666677777777777777777663 344456666677777777777777777766653100 011 456
Q ss_pred HHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHcccC---ChhhHHHHHHHHhcc
Q 044786 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH---NTVVWTAKIVNNCRE 196 (340)
Q Consensus 120 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~ 196 (340)
+..+...+...|++++|...++...+... +. ..+.+.|++++|...++.+... +...+..+...+...
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~~-------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTEHR--TA-------DILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCC--CH-------HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCc--hh-------HHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHh
Confidence 66666666667777777777666666542 21 2344555566666666655432 233455555555555
Q ss_pred CchhHHHHHHHHHhhcccCCChhhHHHHHHhcccCCchhchHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHH
Q 044786 197 GHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERV 276 (340)
Q Consensus 197 ~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~ 276 (340)
|++++|...+++..+. . +.+..++..+...|.+.|++++|.+.
T Consensus 153 ~~~~~A~~~~~~a~~~------------------------------------~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 195 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKR------------------------------------A-PEDARGYSNRAAALAKLMSFPEAIAD 195 (258)
T ss_dssp TCHHHHHHHHHHHHHH------------------------------------C-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCHHHHHHHHHHHHhc------------------------------------C-cccHHHHHHHHHHHHHhCCHHHHHHH
Confidence 6666665555555442 1 22445666777777788888888888
Q ss_pred HHHhhc--CCcHHHHHHHHHHHHHcCchHHHHHHHHHHHHcC----CccchhHHHHHHH
Q 044786 277 FELIVD--KKNIASWNAMLVGYIRNGLYVEATKFLYLMKASG----IQIQESLINDLRI 329 (340)
Q Consensus 277 ~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g----~~~~~~t~~~ll~ 329 (340)
|++... +.+...|..+...|.+.|++++|.+.+++..+.. ..|+.......+.
T Consensus 196 ~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~ 254 (258)
T 3uq3_A 196 CNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYY 254 (258)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHH
Confidence 877765 2356777788888888888888888888776553 2255444444443
No 32
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.64 E-value=4.9e-14 Score=113.18 Aligned_cols=215 Identities=11% Similarity=0.037 Sum_probs=174.3
Q ss_pred cchhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCc--C-C-------ccc
Q 044786 10 TDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL--R-D-------FNS 79 (340)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~-------~~~ 79 (340)
...|..+...+...|++++|.+.|+...+. . .+...+..+...+...|++++|.+.|++..+ | + ..+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~-~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWEL-H--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-S--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHh-h--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 457788889999999999999999999998 5 7889999999999999999999999998773 2 2 467
Q ss_pred HHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHH
Q 044786 80 WAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLI 159 (340)
Q Consensus 80 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 159 (340)
|..+...+...|++++|.+.|++.... .|+. ..+...|++++|...++.+...... +...+..+.
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~-------~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~ 146 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTE-------HRTA-------DILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEG 146 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-------CCCH-------HHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhc-------Cchh-------HHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHH
Confidence 888999999999999999999999988 4553 3466678999999999998887533 567888899
Q ss_pred HHHHhhcCHHHHHHHHHHccc---CChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCChhhHHHHHHhcccCCchhc
Q 044786 160 NFYGKFRCLEDADFVFSQLKR---HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGN 236 (340)
Q Consensus 160 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~ 236 (340)
..+...|++++|...|++..+ .+..+|..+...|...|++++|...+++..+.. +.+...+..+...+...|++++
T Consensus 147 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~ 225 (258)
T 3uq3_A 147 KEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYAS 225 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHH
Confidence 999999999999999999763 367789999999999999999999999987742 1224445555555555555544
Q ss_pred hHHHHHHH
Q 044786 237 CGRQMHAN 244 (340)
Q Consensus 237 ~~~~~~~~ 244 (340)
+...++.
T Consensus 226 -A~~~~~~ 232 (258)
T 3uq3_A 226 -ALETLDA 232 (258)
T ss_dssp -HHHHHHH
T ss_pred -HHHHHHH
Confidence 4444333
No 33
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.64 E-value=2.4e-12 Score=113.62 Aligned_cols=287 Identities=8% Similarity=-0.064 Sum_probs=216.8
Q ss_pred cchhHHHHHHhhh----ccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh----cCChhHHHHHHhhcCc-CCcccH
Q 044786 10 TDMYTCLIKECTF----QKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVS----CGQLDTARQLFDEMPL-RDFNSW 80 (340)
Q Consensus 10 ~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~-~~~~~~ 80 (340)
+..+..+-..|.. .+++++|.+.|+..... | +...+..|...|.. .++.++|.+.|++..+ .+...+
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~ 186 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ-G---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSC 186 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 3444455555555 56777777777777665 4 45566666666665 6777788877776653 355566
Q ss_pred HHHHHHHHc----ccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhh----ccchhhHHHHHHHHHHcCCCCch
Q 044786 81 AVMIVGYVD----VADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVC----TMNMELGKQVHGLLFKLGSSRNI 152 (340)
Q Consensus 81 ~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 152 (340)
..+...|.. .+++++|.+.|++..+.+ +...+..+...+.. .+++++|.++|+...+.+ +.
T Consensus 187 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--------~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 255 (490)
T 2xm6_A 187 NQLGYMYSRGLGVERNDAISAQWYRKSATSG--------DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NS 255 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CH
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 777777776 788888888888887663 34456666666665 789999999999988875 45
Q ss_pred hHHHHHHHHHHh----hcCHHHHHHHHHHcccC-ChhhHHHHHHHHhcc-----CchhHHHHHHHHHhhcccCCChhhHH
Q 044786 153 SLTGSLINFYGK----FRCLEDADFVFSQLKRH-NTVVWTAKIVNNCRE-----GHFHQVFNDFKEMGRERIKKNSYTFS 222 (340)
Q Consensus 153 ~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~-~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~t~~ 222 (340)
..+..+...|.. .++.++|.+.|++..+. +...+..+...|... +++++|+..|++..+.| +...+.
T Consensus 256 ~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 332 (490)
T 2xm6_A 256 IAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQA 332 (490)
T ss_dssp HHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHH
Confidence 667777777877 89999999999998755 566777888888877 89999999999998865 334455
Q ss_pred HHHHhcccCC---chhchHHHHHHHHHHhCCCccHHHHHHHHHHHhc----cCCHHHHHHHHHHhhcCCcHHHHHHHHHH
Q 044786 223 SVLKACGGVD---DDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGK----CRLLRDAERVFELIVDKKNIASWNAMLVG 295 (340)
Q Consensus 223 ~ll~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~li~~ 295 (340)
.+-..|...| +.++ +..+++...+.+ ++..+..|-..|.. .+++++|.+.|++.....+...+..|...
T Consensus 333 ~lg~~y~~~g~~~~~~~-A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~ 408 (490)
T 2xm6_A 333 NLGAIYFRLGSEEEHKK-AVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEI 408 (490)
T ss_dssp HHHHHHHHSCCHHHHHH-HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhCCCcccHHH-HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 5555555444 5545 677777776654 56778888888888 89999999999999887888899999999
Q ss_pred HHH----cCchHHHHHHHHHHHHcCCc
Q 044786 296 YIR----NGLYVEATKFLYLMKASGIQ 318 (340)
Q Consensus 296 ~~~----~~~~~~a~~~~~~m~~~g~~ 318 (340)
|.+ .+++++|...|++..+.|..
T Consensus 409 y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 409 YYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 998 89999999999999988744
No 34
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.64 E-value=7.5e-14 Score=111.91 Aligned_cols=196 Identities=10% Similarity=-0.067 Sum_probs=124.0
Q ss_pred cchhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCc---CCcccHHHHHHH
Q 044786 10 TDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL---RDFNSWAVMIVG 86 (340)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~ 86 (340)
+..|..+...+...|++++|.+.|+.+... .+.+...+..+...+.+.|++++|.+.|++..+ .+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEI--DPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHH
Confidence 344556666666777777777777776665 233566666666777777777777777766542 244456666666
Q ss_pred HHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhc
Q 044786 87 YVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166 (340)
Q Consensus 87 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 166 (340)
+...|++++|.+.++++... +. .+.+...+..+...+...|++++|.+.++...+.... +...+..+...|...|
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~--~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g 189 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQD--TL--YPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKER 189 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTC--TT--CTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTT
T ss_pred HHHHhHHHHHHHHHHHHHhC--cc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcC
Confidence 77777777777777776651 11 0234556666666677777777777777766665432 4556666666777777
Q ss_pred CHHHHHHHHHHcccC---ChhhHHHHHHHHhccCchhHHHHHHHHHhhc
Q 044786 167 CLEDADFVFSQLKRH---NTVVWTAKIVNNCREGHFHQVFNDFKEMGRE 212 (340)
Q Consensus 167 ~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 212 (340)
++++|...+++..+. +...+..+...+...|++++|...++++.+.
T Consensus 190 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 190 EYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp CHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 777777777665432 4445666666666677777777777766653
No 35
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.64 E-value=9.7e-14 Score=109.01 Aligned_cols=206 Identities=11% Similarity=-0.076 Sum_probs=146.2
Q ss_pred CcchhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCc---CCcccHHHHHH
Q 044786 9 TTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL---RDFNSWAVMIV 85 (340)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~ 85 (340)
++..+..+...+...|++++|.+.++.+.+. .+.+...+..+...+...|++++|.+.|++... .+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKS--DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 4556777777888888888888888888776 344577777788888888888888888877652 34556777777
Q ss_pred HHHcc-cChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 044786 86 GYVDV-ADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164 (340)
Q Consensus 86 ~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 164 (340)
.+... |++++|.+.++++.+. +. .+.+...+..+...+...|++++|...++.+.+.... +...+..+...+.+
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~--~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~ 159 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALAD--PT--YPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKML 159 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTS--TT--CSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHcC--cC--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHH
Confidence 88888 8888888888887762 11 1334567777777888888888888888877776533 46677777777888
Q ss_pred hcCHHHHHHHHHHccc----CChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCChhhHHH
Q 044786 165 FRCLEDADFVFSQLKR----HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSS 223 (340)
Q Consensus 165 ~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ 223 (340)
.|++++|...+++..+ .+...+..+...+...|+.++|..+++.+.+. .|+...+..
T Consensus 160 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~ 220 (225)
T 2vq2_A 160 AGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN--FPYSEELQT 220 (225)
T ss_dssp HTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHH
Confidence 8888888877777642 34556666667777777788777777777653 355444433
No 36
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.63 E-value=2.7e-12 Score=114.51 Aligned_cols=319 Identities=11% Similarity=0.072 Sum_probs=191.3
Q ss_pred CCCcchhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCc--CCcccHHHHH
Q 044786 7 PITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL--RDFNSWAVMI 84 (340)
Q Consensus 7 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li 84 (340)
|-+...|..++.. .+.|++++|..+|+.+... .+.+...|...+..+.+.|++++|.++|++... |+...|...+
T Consensus 10 P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~--~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~ 86 (530)
T 2ooe_A 10 PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQ--FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYL 86 (530)
T ss_dssp TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHH
T ss_pred CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 3456678888874 6789999999999999876 566788899999999999999999999998874 4544555444
Q ss_pred HHH-HcccChhHHHH----HHHHHHHhhcCCccccchHHHHHHHHHHhhh---------ccchhhHHHHHHH--------
Q 044786 85 VGY-VDVADYQECIT----LFAEMMKRKKGHMLLVFPAWIIVCVLKACVC---------TMNMELGKQVHGL-------- 142 (340)
Q Consensus 85 ~~~-~~~g~~~~a~~----~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~---------~~~~~~a~~~~~~-------- 142 (340)
... ...|+.++|.+ +|++....- |.+ .++...|...+....+ .|+++.|..+|+.
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~-g~~--~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~ 163 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKI-GME--IMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMIN 163 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHT-TTS--TTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTT
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHC-CCC--cccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhh
Confidence 322 22344444333 343333221 110 1112222222222111 2222222222222
Q ss_pred --------------------------------------------------------------------------------
Q 044786 143 -------------------------------------------------------------------------------- 142 (340)
Q Consensus 143 -------------------------------------------------------------------------------- 142 (340)
T Consensus 164 ~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~ 243 (530)
T 2ooe_A 164 IEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSN 243 (530)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcC
Confidence
Q ss_pred --------------------HHHcCCCCchhHHHHHHHHHHh-------hcCHH-------HHHHHHHHccc---C-Chh
Q 044786 143 --------------------LFKLGSSRNISLTGSLINFYGK-------FRCLE-------DADFVFSQLKR---H-NTV 184 (340)
Q Consensus 143 --------------------~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~---~-~~~ 184 (340)
..... +.+...|......+.+ .|+++ +|..+|++..+ | +..
T Consensus 244 ~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~ 322 (530)
T 2ooe_A 244 PLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNML 322 (530)
T ss_dssp SSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHH
T ss_pred CccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHH
Confidence 22211 1123333444444443 46665 77777777653 3 456
Q ss_pred hHHHHHHHHhccCchhHHHHHHHHHhhcccCCCh--hhHHHHHHhcccCCchhchHHHHHHHHHHhCCCccHHHHHHHHH
Q 044786 185 VWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNS--YTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVD 262 (340)
Q Consensus 185 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 262 (340)
.|..++..+.+.|++++|..+|++..+. .|+. ..|......+.+.|+.++ +..+++...+.. +.+...|.....
T Consensus 323 l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~-A~~~~~~Al~~~-~~~~~~~~~~a~ 398 (530)
T 2ooe_A 323 LYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKS-GRMIFKKAREDA-RTRHHVYVTAAL 398 (530)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHTCT-TCCTHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHH-HHHHHHHHHhcc-CCchHHHHHHHH
Confidence 6777777777788888888888887763 4542 356666666667777755 666766665532 112233322221
Q ss_pred H-HhccCCHHHHHHHHHHhhc--CCcHHHHHHHHHHHHHcCchHHHHHHHHHHHHcCC-ccc--hhHHHHHHHHhhhcCc
Q 044786 263 M-YGKCRLLRDAERVFELIVD--KKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGI-QIQ--ESLINDLRIACSSISA 336 (340)
Q Consensus 263 ~-~~~~~~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~~~--~~t~~~ll~a~~~~g~ 336 (340)
. +...|+.++|..+|+.... +.++..|..++..+.+.|+.++|..+|++....+- .|+ ...|...+......|+
T Consensus 399 ~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~ 478 (530)
T 2ooe_A 399 MEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD 478 (530)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSC
T ss_pred HHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCC
Confidence 1 2357888888888887765 23677888888888888999999999988877642 232 3356666665555564
No 37
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.63 E-value=1.4e-14 Score=117.74 Aligned_cols=246 Identities=11% Similarity=0.006 Sum_probs=132.8
Q ss_pred HhhhccchhhHHHHHHHHHhhcCC-C--CCHHHHHHHHHHHHhcCChhHHHHHHhhcCc---CCcccHHHHHHHHHcccC
Q 044786 19 ECTFQKDSAGAFELLNHIRKRVNI-K--PTLLFLNRLLLMHVSCGQLDTARQLFDEMPL---RDFNSWAVMIVGYVDVAD 92 (340)
Q Consensus 19 ~~~~~~~~~~a~~~~~~m~~~~g~-~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~ 92 (340)
.....|++++|++.++.+.+. .. . .+..++..+...+...|++++|.+.|++..+ .+..+|..+...+...|+
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~ 92 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILAS-RALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGN 92 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTS-SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC
T ss_pred ccCccchHHHHHHHHHHHHhc-ccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccC
Confidence 344567777777777777765 21 1 1345666666777777777777777766552 244556666666777777
Q ss_pred hhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHH
Q 044786 93 YQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDAD 172 (340)
Q Consensus 93 ~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 172 (340)
+++|.+.|++..+.. +.+..++..+...+...|++++|...++.+.+... +.......+..+...|++++|.
T Consensus 93 ~~~A~~~~~~al~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~--~~~~~~~~~~~~~~~~~~~~A~ 164 (275)
T 1xnf_A 93 FDAAYEAFDSVLELD------PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP--NDPFRSLWLYLAEQKLDEKQAK 164 (275)
T ss_dssp HHHHHHHHHHHHHHC------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHhcC------ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHhcCHHHHH
Confidence 777777777766653 23455666666666666666666666666665432 2222222223333444444444
Q ss_pred HHHHHccc---CChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCChhhHHHHHHhcccCCchhchHHHHHHHHHHhC
Q 044786 173 FVFSQLKR---HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIG 249 (340)
Q Consensus 173 ~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 249 (340)
..+++... ++...+ .++..+...++.++|...+++..... |+.
T Consensus 165 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~------------------------------- 210 (275)
T 1xnf_A 165 EVLKQHFEKSDKEQWGW-NIVEFYLGNISEQTLMERLKADATDN--TSL------------------------------- 210 (275)
T ss_dssp HHHHHHHHHSCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSH--HHH-------------------------------
T ss_pred HHHHHHHhcCCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhccc--ccc-------------------------------
Confidence 44433321 111111 13333333333344444433332210 000
Q ss_pred CCccHHHHHHHHHHHhccCCHHHHHHHHHHhhc-CCcHHHHHHHHHHHHHcCchHHHHHHH
Q 044786 250 LESDEYVQCGLVDMYGKCRLLRDAERVFELIVD-KKNIASWNAMLVGYIRNGLYVEATKFL 309 (340)
Q Consensus 250 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~ 309 (340)
.+.+..++..+...|.+.|++++|...|++... .|+ .+.....++...|++++|++.+
T Consensus 211 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 211 AEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH--NFVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT--TCHHHHHHHHHHHHHHHC----
T ss_pred cccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCch--hHHHHHHHHHHHHHHHhhHHHH
Confidence 001245667778888888888888888888765 232 2333355667777888777665
No 38
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.61 E-value=4.7e-14 Score=121.11 Aligned_cols=292 Identities=10% Similarity=-0.045 Sum_probs=209.1
Q ss_pred CCcchhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCC----HHHHHHHHHHHHhcCChhHHHHHHhhcCc-----C---
Q 044786 8 ITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPT----LLFLNRLLLMHVSCGQLDTARQLFDEMPL-----R--- 75 (340)
Q Consensus 8 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~--- 75 (340)
.....+......+...|++++|...|+..... . +.+ ..++..+...+...|++++|...|++... .
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~-~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQV-G-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-C-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 34455667778888999999999999999987 3 223 36788888999999999999999987641 1
Q ss_pred -CcccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccc--------------------hh
Q 044786 76 -DFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN--------------------ME 134 (340)
Q Consensus 76 -~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~--------------------~~ 134 (340)
...++..+...+...|++++|...+++..+.............++..+...+...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 233677888999999999999999999887631110001224588888999999999 99
Q ss_pred hHHHHHHHHHHc----CCCC-chhHHHHHHHHHHhhcCHHHHHHHHHHcccC-----C----hhhHHHHHHHHhccCchh
Q 044786 135 LGKQVHGLLFKL----GSSR-NISLTGSLINFYGKFRCLEDADFVFSQLKRH-----N----TVVWTAKIVNNCREGHFH 200 (340)
Q Consensus 135 ~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~----~~~~~~li~~~~~~~~~~ 200 (340)
+|...++...+. +..+ ...++..+...|...|++++|...+++..+. + ..++..+...|...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 999998876543 2111 2346778888999999999999998886531 1 236888888999999999
Q ss_pred HHHHHHHHHhhcccC-CC----hhhHHHHHHhcccCCchhchHHHHHHHHHHh----CCCc-cHHHHHHHHHHHhccCCH
Q 044786 201 QVFNDFKEMGRERIK-KN----SYTFSSVLKACGGVDDDGNCGRQMHANIVKI----GLES-DEYVQCGLVDMYGKCRLL 270 (340)
Q Consensus 201 ~a~~~~~~m~~~~~~-p~----~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~~~~ 270 (340)
+|...+++..+.... ++ ..++..+...+...|++++ +...++..... +-.+ ...++..+...|.+.|++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 323 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEK-AIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNH 323 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHH-HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 999999887653111 11 3456677777888888866 55555444332 1111 255677788888888888
Q ss_pred HHHHHHHHHhhcC--------CcHHHHHHHHHHHHHcCch
Q 044786 271 RDAERVFELIVDK--------KNIASWNAMLVGYIRNGLY 302 (340)
Q Consensus 271 ~~A~~~~~~~~~~--------~~~~~~~~li~~~~~~~~~ 302 (340)
++|.+.+++...- ....++..+...+...|+.
T Consensus 324 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 324 DQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 8888888776541 1244566666677766665
No 39
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.61 E-value=4.1e-14 Score=112.67 Aligned_cols=197 Identities=10% Similarity=-0.005 Sum_probs=145.8
Q ss_pred CCCcchhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCc---CCcccHHHH
Q 044786 7 PITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL---RDFNSWAVM 83 (340)
Q Consensus 7 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l 83 (340)
..++..|..+...+...|++++|.+.|+.+.+. .+.+...+..+...+.+.|++++|.+.|++..+ .+..++..+
T Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 97 (243)
T 2q7f_A 20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE--NKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGA 97 (243)
T ss_dssp ----------------------CCTTHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHH
Confidence 345567777888888999999999999998875 445688888888999999999999999988763 355678888
Q ss_pred HHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 044786 84 IVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYG 163 (340)
Q Consensus 84 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 163 (340)
...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++.+.+.... +...+..+...+.
T Consensus 98 a~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~ 170 (243)
T 2q7f_A 98 GNVYVVKEMYKEAKDMFEKALRAG------MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLA 170 (243)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHT------CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHH
Confidence 888999999999999999998874 456778888888999999999999999988877543 6678888888999
Q ss_pred hhcCHHHHHHHHHHccc---CChhhHHHHHHHHhccCchhHHHHHHHHHhhc
Q 044786 164 KFRCLEDADFVFSQLKR---HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRE 212 (340)
Q Consensus 164 ~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 212 (340)
+.|++++|...|++..+ .+..++..+...|...|++++|...+++..+.
T Consensus 171 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 171 NEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 99999999999988753 35667888888999999999999999988774
No 40
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.61 E-value=7.5e-13 Score=107.30 Aligned_cols=177 Identities=11% Similarity=0.022 Sum_probs=101.6
Q ss_pred HHHHHHHhcCChhHHHHHHhhcCc---CCcccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHh
Q 044786 51 RLLLMHVSCGQLDTARQLFDEMPL---RDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKAC 127 (340)
Q Consensus 51 ~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~ 127 (340)
.....+...|++++|.+.|++..+ .+...+..+...+...|++++|++.+++..+.. . ........|..+...+
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~-~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV--N-ATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS--C-TTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc--C-chhHHHHHHHHHHHHH
Confidence 344555566666666666665542 234456666666666666666666666666531 1 0022233466666666
Q ss_pred hhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHcccC---ChhhHHHHHHHHhccCchhHHHH
Q 044786 128 VCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH---NTVVWTAKIVNNCREGHFHQVFN 204 (340)
Q Consensus 128 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~ 204 (340)
...|++++|...++...+.... +..++..+...|...|++++|...|++..+. +...|..+...+...+++++|..
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777777776666665433 4456667777777777777777777776532 44455555523333447777777
Q ss_pred HHHHHhhcccCCC-hhhHHHHHHhcccCCc
Q 044786 205 DFKEMGRERIKKN-SYTFSSVLKACGGVDD 233 (340)
Q Consensus 205 ~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~ 233 (340)
.|++..+. .|+ ...+..+...+...++
T Consensus 164 ~~~~a~~~--~p~~~~~~~~~~~~~~~~~~ 191 (272)
T 3u4t_A 164 SFVKVLEL--KPNIYIGYLWRARANAAQDP 191 (272)
T ss_dssp HHHHHHHH--STTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHh--CccchHHHHHHHHHHHHcCc
Confidence 77777664 333 3334444444444343
No 41
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.61 E-value=6.8e-14 Score=109.65 Aligned_cols=57 Identities=16% Similarity=0.180 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhhc--CCcHHHHHHHHHHHHHcCchHHHHHHHHH
Q 044786 255 YVQCGLVDMYGKCRLLRDAERVFELIVD--KKNIASWNAMLVGYIRNGLYVEATKFLYL 311 (340)
Q Consensus 255 ~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 311 (340)
..+..+..+|...|++++|...|++... +.+...+..+...+.+.|++++|.+.|++
T Consensus 152 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 152 EIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 3333444444444444444444444433 12334444444444444445444444443
No 42
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.60 E-value=1.3e-12 Score=106.19 Aligned_cols=221 Identities=9% Similarity=-0.070 Sum_probs=141.8
Q ss_pred ccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhh----ccchhhHHHHHHHHHHcCCCCchh
Q 044786 78 NSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVC----TMNMELGKQVHGLLFKLGSSRNIS 153 (340)
Q Consensus 78 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~ 153 (340)
.++..+...+...|++++|++.|++..+.+ +...+..+...+.. .+++++|...|+...+.+ +..
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~--------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~ 75 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACDLK--------ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSN 75 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHH
Confidence 344455555555666666666666655531 22344555555555 666666666666665554 445
Q ss_pred HHHHHHHHHHh----hcCHHHHHHHHHHcccC-ChhhHHHHHHHHhc----cCchhHHHHHHHHHhhcccCCChhhHHHH
Q 044786 154 LTGSLINFYGK----FRCLEDADFVFSQLKRH-NTVVWTAKIVNNCR----EGHFHQVFNDFKEMGRERIKKNSYTFSSV 224 (340)
Q Consensus 154 ~~~~l~~~~~~----~~~~~~a~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~t~~~l 224 (340)
.+..+...|.. .+++++|...|++..+. +...+..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 76 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 76 GCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 55556666666 66666666666665433 44556666666666 667777777777666644 33344444
Q ss_pred HHhccc----CCchhchHHHHHHHHHHhCCCccHHHHHHHHHHHhc----cCCHHHHHHHHHHhhcCCcHHHHHHHHHHH
Q 044786 225 LKACGG----VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGK----CRLLRDAERVFELIVDKKNIASWNAMLVGY 296 (340)
Q Consensus 225 l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~li~~~ 296 (340)
-..+.. .+++++ +...++...+.+ +...+..+...|.. .+++++|.+.|++.....+...+..+...|
T Consensus 153 g~~~~~~~~~~~~~~~-A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~ 228 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKK-ALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQ 228 (273)
T ss_dssp HHHHHHTSSSCCCHHH-HHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHH-HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 444444 666655 555555555543 34566677777877 899999999998887766677888888888
Q ss_pred HH----cCchHHHHHHHHHHHHcC
Q 044786 297 IR----NGLYVEATKFLYLMKASG 316 (340)
Q Consensus 297 ~~----~~~~~~a~~~~~~m~~~g 316 (340)
.+ .+++++|.+.|++..+.|
T Consensus 229 ~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 229 YNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HcCCCcccCHHHHHHHHHHHHHcC
Confidence 88 899999999999988876
No 43
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.60 E-value=7.6e-13 Score=106.01 Aligned_cols=206 Identities=10% Similarity=0.053 Sum_probs=115.7
Q ss_pred cHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHH
Q 044786 79 SWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158 (340)
Q Consensus 79 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 158 (340)
.|..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++.+.+.... +...
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~---- 107 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNTEQAKVPLRKALEID------PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARV---- 107 (252)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHH----
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC------CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHH----
Confidence 34455555555555555555555555542 233444455555555555555555555554444321 3334
Q ss_pred HHHHHhhcCHHHHHHHHHHcccCChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCC-ChhhHHHHHHhcccCCchhch
Q 044786 159 INFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKK-NSYTFSSVLKACGGVDDDGNC 237 (340)
Q Consensus 159 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~~~~~~~ 237 (340)
+..+...|...|++++|..+++++.+.+..| +...+..+...+...|++++
T Consensus 108 ---------------------------~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~- 159 (252)
T 2ho1_A 108 ---------------------------LNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQ- 159 (252)
T ss_dssp ---------------------------HHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHH-
T ss_pred ---------------------------HHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHH-
Confidence 4444444445555555555555544422223 22334444444555555544
Q ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhc--CCcHHHHHHHHHHHHHcCchHHHHHHHHHHHHc
Q 044786 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD--KKNIASWNAMLVGYIRNGLYVEATKFLYLMKAS 315 (340)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 315 (340)
+...++...+.. +.+...+..+...|.+.|++++|...++.... +.+...+..+...+.+.|++++|.+.++++.+.
T Consensus 160 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 160 AKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 444444433332 22456667778888888888888888888765 246667788888888889999998888888765
Q ss_pred CCccchhHHHH
Q 044786 316 GIQIQESLIND 326 (340)
Q Consensus 316 g~~~~~~t~~~ 326 (340)
.|+...+..
T Consensus 239 --~p~~~~~~~ 247 (252)
T 2ho1_A 239 --YPGSLEYQE 247 (252)
T ss_dssp --CTTSHHHHH
T ss_pred --CCCCHHHHH
Confidence 344444433
No 44
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.59 E-value=1.3e-13 Score=118.71 Aligned_cols=269 Identities=10% Similarity=-0.054 Sum_probs=182.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHhhcCc--C-Cc----ccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHH
Q 044786 47 LFLNRLLLMHVSCGQLDTARQLFDEMPL--R-DF----NSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI 119 (340)
Q Consensus 47 ~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ 119 (340)
..+..+...+...|++++|.+.|++..+ | +. ..|..+...+...|++++|++.+++..+.............+
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 3444555667777888888888877662 2 22 256677777778888888888888776552111101334557
Q ss_pred HHHHHHHhhhccchhhHHHHHHHHHHcC----C-CCchhHHHHHHHHHHhhcC-----------------HHHHHHHHHH
Q 044786 120 IVCVLKACVCTMNMELGKQVHGLLFKLG----S-SRNISLTGSLINFYGKFRC-----------------LEDADFVFSQ 177 (340)
Q Consensus 120 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~~ 177 (340)
+..+...+...|++++|...+++..+.. - .....++..+...|...|+ +++|.+.+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 7777778888888888888877665441 1 1134466777778888888 7777777776
Q ss_pred cccC---------ChhhHHHHHHHHhccCchhHHHHHHHHHhhcccC-CC----hhhHHHHHHhcccCCchhchHHHHHH
Q 044786 178 LKRH---------NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIK-KN----SYTFSSVLKACGGVDDDGNCGRQMHA 243 (340)
Q Consensus 178 ~~~~---------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~t~~~ll~~~~~~~~~~~~~~~~~~ 243 (340)
..+- ...++..+...|...|++++|...+++..+.... ++ ...+..+...+...|++++ +...++
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~ 287 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFED-AAEHYK 287 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHH-HHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHH-HHHHHH
Confidence 5321 2346777778888888888888888887653110 11 2256777777888888866 555555
Q ss_pred HHHHhC----CC-ccHHHHHHHHHHHhccCCHHHHHHHHHHhhcC----C----cHHHHHHHHHHHHHcCchHHHHHHHH
Q 044786 244 NIVKIG----LE-SDEYVQCGLVDMYGKCRLLRDAERVFELIVDK----K----NIASWNAMLVGYIRNGLYVEATKFLY 310 (340)
Q Consensus 244 ~~~~~~----~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~----~----~~~~~~~li~~~~~~~~~~~a~~~~~ 310 (340)
...... .. ....++..+...|...|++++|.+.+++...- + ...++..+...|.+.|++++|.+.++
T Consensus 288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 367 (411)
T 4a1s_A 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE 367 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 443321 11 12567788889999999999999999887651 1 24477888899999999999999999
Q ss_pred HHHHcC
Q 044786 311 LMKASG 316 (340)
Q Consensus 311 ~m~~~g 316 (340)
+.....
T Consensus 368 ~al~~~ 373 (411)
T 4a1s_A 368 QHLQLA 373 (411)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 886553
No 45
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.58 E-value=1.2e-12 Score=106.16 Aligned_cols=220 Identities=9% Similarity=-0.032 Sum_probs=166.5
Q ss_pred cccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCH
Q 044786 89 DVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168 (340)
Q Consensus 89 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 168 (340)
..|++++|++.|+++.+.. .. ..+.+..++..+...+...|++++|...++...+.... +..++..+...|...|++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~-~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASR-AL-TDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSS-CC-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCH
T ss_pred ccchHHHHHHHHHHHHhcc-cc-cCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCH
Confidence 4578888888888888752 11 00235667888888888888999999888888877543 677888888888899999
Q ss_pred HHHHHHHHHccc---CChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCChhhHHHHHHhcccCCchhchHHHHHHHH
Q 044786 169 EDADFVFSQLKR---HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANI 245 (340)
Q Consensus 169 ~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~ 245 (340)
++|...|++..+ .+..++..+...|...|++++|...|+++.+. .|+.......+..+...|++++ +...+...
T Consensus 94 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~-A~~~~~~~ 170 (275)
T 1xnf_A 94 DAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQ-AKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHH-HHHHHHHH
Confidence 999998888763 35677888888999999999999999998874 4555444444555566678766 66666555
Q ss_pred HHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhcC-C-----cHHHHHHHHHHHHHcCchHHHHHHHHHHHHcC
Q 044786 246 VKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK-K-----NIASWNAMLVGYIRNGLYVEATKFLYLMKASG 316 (340)
Q Consensus 246 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 316 (340)
.... +++...+ .+...+...++.++|.+.++..... | +...|..+...|.+.|++++|...|++.....
T Consensus 171 ~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 171 FEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp HHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 5442 3444444 4777788888899999999988763 2 25788899999999999999999999998664
No 46
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.58 E-value=8.4e-13 Score=103.61 Aligned_cols=71 Identities=11% Similarity=-0.110 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhhc--C-CcHHHHHHHHHHHHHcCchHHHHHHHHHHHHcCCccchhHHHH
Q 044786 254 EYVQCGLVDMYGKCRLLRDAERVFELIVD--K-KNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLIND 326 (340)
Q Consensus 254 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ 326 (340)
...+..+...|.+.|++++|.+.+++... + .+...+..+...+...|+.++|..+++.+... .|+...+..
T Consensus 147 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~ 220 (225)
T 2vq2_A 147 PPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN--FPYSEELQT 220 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHH
Confidence 44455566666666666666666666544 2 34555556666666666666666666666543 344444333
No 47
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.57 E-value=5.8e-13 Score=107.96 Aligned_cols=236 Identities=10% Similarity=-0.063 Sum_probs=183.3
Q ss_pred cccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCc--hhH
Q 044786 77 FNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRN--ISL 154 (340)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~ 154 (340)
...+......+...|++++|++.|++..+.. +.+...+..+...+...|++++|...++...+.+..++ ...
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 76 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK------YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSAD 76 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT------CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHH
Confidence 3455667788899999999999999999884 34455888899999999999999999999998542222 234
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHccc---CChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCC-hhhHHHHHHhccc
Q 044786 155 TGSLINFYGKFRCLEDADFVFSQLKR---HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKN-SYTFSSVLKACGG 230 (340)
Q Consensus 155 ~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~ 230 (340)
|..+...|...|++++|.+.|++..+ .+..+|..+...|...|++++|+..|++..+. .|+ ...+..+...+..
T Consensus 77 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~ 154 (272)
T 3u4t_A 77 FEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYY 154 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHH
Confidence 88999999999999999999998764 36678999999999999999999999999875 454 4555555513333
Q ss_pred CCchhchHHHHHHHHHHhCCCccHHHHHHHHHHHhccCC---HHHHHHHHHHhhc----CCc------HHHHHHHHHHHH
Q 044786 231 VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRL---LRDAERVFELIVD----KKN------IASWNAMLVGYI 297 (340)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~A~~~~~~~~~----~~~------~~~~~~li~~~~ 297 (340)
.+++++ +...++...+.. +.+...+..+...+...|+ +++|...+++... .|+ ..+|..+...|.
T Consensus 155 ~~~~~~-A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 232 (272)
T 3u4t_A 155 NKEYVK-ADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYT 232 (272)
T ss_dssp TTCHHH-HHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHH
Confidence 447766 777777777653 3356777788888888888 7778888877664 244 257888889999
Q ss_pred HcCchHHHHHHHHHHHHcCCccchhHH
Q 044786 298 RNGLYVEATKFLYLMKASGIQIQESLI 324 (340)
Q Consensus 298 ~~~~~~~a~~~~~~m~~~g~~~~~~t~ 324 (340)
+.|++++|.+.|++..+.. |+....
T Consensus 233 ~~~~~~~A~~~~~~al~~~--p~~~~a 257 (272)
T 3u4t_A 233 INRDKVKADAAWKNILALD--PTNKKA 257 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHC--TTCHHH
T ss_pred HcCCHHHHHHHHHHHHhcC--ccHHHH
Confidence 9999999999999998764 554433
No 48
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.57 E-value=1.1e-11 Score=108.70 Aligned_cols=298 Identities=10% Similarity=-0.059 Sum_probs=202.9
Q ss_pred CCCcchhHHHHHHhhhccchhhHHHHHHHHHhhc-------CCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCc-----
Q 044786 7 PITTDMYTCLIKECTFQKDSAGAFELLNHIRKRV-------NIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL----- 74 (340)
Q Consensus 7 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-------g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----- 74 (340)
+.....||.+...+...|++++|++.|++..+.. ..+....+|+.+..+|...|++++|...+++..+
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 3345678999999999999999999998876421 1223467899999999999999999999887641
Q ss_pred --C----CcccHHHHHHHHHc--ccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHh---hhccchhhHHHHHHHH
Q 044786 75 --R----DFNSWAVMIVGYVD--VADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKAC---VCTMNMELGKQVHGLL 143 (340)
Q Consensus 75 --~----~~~~~~~li~~~~~--~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~---~~~~~~~~a~~~~~~~ 143 (340)
+ ...++..+..++.. .+++++|++.|++..+.. +-+...+..+..++ ...++.++|.+.++..
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~------p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~a 201 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK------PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQA 201 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS------TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHH
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 1 12345555555554 457999999999999883 23344444444443 4456778899999988
Q ss_pred HHcCCCCchhHHHHHHHHHHh----hcCHHHHHHHHHHccc---CChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCC
Q 044786 144 FKLGSSRNISLTGSLINFYGK----FRCLEDADFVFSQLKR---HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKK 216 (340)
Q Consensus 144 ~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 216 (340)
.+.... +..++..+...+.. .+++++|.+.+++..+ .+..++..+...|...|++++|...+++..+. .|
T Consensus 202 l~l~p~-~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p 278 (472)
T 4g1t_A 202 IRLNPD-NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IP 278 (472)
T ss_dssp HHHCSS-CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--ST
T ss_pred hhcCCc-chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CC
Confidence 887643 45555555544443 4678899999988653 36678899999999999999999999999875 45
Q ss_pred C-hhhHHHHHHhcccC-------------------CchhchHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHH
Q 044786 217 N-SYTFSSVLKACGGV-------------------DDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERV 276 (340)
Q Consensus 217 ~-~~t~~~ll~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~ 276 (340)
+ ..++..+-..|... +..++ +...++...... +.+..++..+...|.+.|++++|.+.
T Consensus 279 ~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~-A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~ 356 (472)
T 4g1t_A 279 NNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGH-AVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYY 356 (472)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHH-HHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHH-HHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHH
Confidence 4 34454444333211 11112 334444444432 34566788899999999999999999
Q ss_pred HHHhhc-CCcHH----HHHHHHH-HHHHcCchHHHHHHHHHHHHc
Q 044786 277 FELIVD-KKNIA----SWNAMLV-GYIRNGLYVEATKFLYLMKAS 315 (340)
Q Consensus 277 ~~~~~~-~~~~~----~~~~li~-~~~~~~~~~~a~~~~~~m~~~ 315 (340)
|++... .|+.. .+..+.. .+...|++++|+..|++....
T Consensus 357 ~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i 401 (472)
T 4g1t_A 357 FQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI 401 (472)
T ss_dssp HHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS
T ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 998865 33322 2223322 345779999999999887654
No 49
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.57 E-value=1.5e-12 Score=110.51 Aligned_cols=240 Identities=11% Similarity=0.058 Sum_probs=154.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHhhcCc---CCcccHHHHHHHHHcccC-hhHHHHHHHHHHHhhcCCccccchHHHHH
Q 044786 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPL---RDFNSWAVMIVGYVDVAD-YQECITLFAEMMKRKKGHMLLVFPAWIIV 121 (340)
Q Consensus 46 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~~~~~~~~~~~~~ 121 (340)
...|+.+..++.+.|++++|++.|++... .+..+|+.+...+...|+ +++|+..|++.+... +-+...|.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~------P~~~~a~~ 170 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ------PKNYQVWH 170 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC------TTCHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC------CCCHHHHH
Confidence 35666677777777888888888877662 244567777777777775 888888888887774 44566777
Q ss_pred HHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHcccC---ChhhHHHHHHHHhc-cC
Q 044786 122 CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH---NTVVWTAKIVNNCR-EG 197 (340)
Q Consensus 122 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~-~~ 197 (340)
.+..++...|++++|...|+.+.+.... +...|..+..++.+.|++++|...|+++.+. +...|+.+..++.. .|
T Consensus 171 ~~g~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~ 249 (382)
T 2h6f_A 171 HRRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTG 249 (382)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Confidence 7777777788888888888877777644 6667777777777777777777777776532 55667777777777 55
Q ss_pred chhHH-----HHHHHHHhhcccCCC-hhhHHHHHHhcccCC--chhchHHHHHHHHHHhCCCccHHHHHHHHHHHhccC-
Q 044786 198 HFHQV-----FNDFKEMGRERIKKN-SYTFSSVLKACGGVD--DDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCR- 268 (340)
Q Consensus 198 ~~~~a-----~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~- 268 (340)
..++| +..|++.... .|+ ...|..+...+...| +..+ +......+ ..-+.+...+..+...|.+.|
T Consensus 250 ~~~eA~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~-a~~~~~~~--~~~p~~~~al~~La~~~~~~~~ 324 (382)
T 2h6f_A 250 YNDRAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPN-LLNQLLDL--QPSHSSPYLIAFLVDIYEDMLE 324 (382)
T ss_dssp SCSHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHH-HHHHHHHH--TTTCCCHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHH-HHHHHHHh--ccCCCCHHHHHHHHHHHHHHhc
Confidence 54666 3666666653 343 445555555566655 3444 33444333 222335566666777776653
Q ss_pred --------CHHHHHHHHHHh-hc-CC-cHHHHHHHHHHHH
Q 044786 269 --------LLRDAERVFELI-VD-KK-NIASWNAMLVGYI 297 (340)
Q Consensus 269 --------~~~~A~~~~~~~-~~-~~-~~~~~~~li~~~~ 297 (340)
.+++|.++++++ .. .| ....|..+...+.
T Consensus 325 ~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 325 NQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 246777777776 32 33 3344554544443
No 50
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.57 E-value=1.1e-12 Score=112.50 Aligned_cols=294 Identities=10% Similarity=-0.050 Sum_probs=217.2
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHhhcCc--C-C----cccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccc
Q 044786 43 KPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL--R-D----FNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVF 115 (340)
Q Consensus 43 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 115 (340)
.+....+......+...|++++|...|++..+ | + ..+|..+...+...|++++|...+++...........+.
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 44566777788889999999999999998763 3 2 236778889999999999999999998765211111123
Q ss_pred hHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCC-C----chhHHHHHHHHHHhhcC--------------------HHH
Q 044786 116 PAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSS-R----NISLTGSLINFYGKFRC--------------------LED 170 (340)
Q Consensus 116 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~--------------------~~~ 170 (340)
...++..+...+...|++++|...++...+.... + ...++..+...|...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 4568888999999999999999999887654211 1 24478888999999999 999
Q ss_pred HHHHHHHcccC---------ChhhHHHHHHHHhccCchhHHHHHHHHHhhccc-CCC----hhhHHHHHHhcccCCchhc
Q 044786 171 ADFVFSQLKRH---------NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERI-KKN----SYTFSSVLKACGGVDDDGN 236 (340)
Q Consensus 171 a~~~~~~~~~~---------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~t~~~ll~~~~~~~~~~~ 236 (340)
|...+++..+- ...++..+...|...|++++|...+++..+... .++ ..++..+...+...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 99988875421 234688889999999999999999999865311 122 2367788888999999977
Q ss_pred hHHHHHHHHHHh----CCCc-cHHHHHHHHHHHhccCCHHHHHHHHHHhhcC----C----cHHHHHHHHHHHHHcCchH
Q 044786 237 CGRQMHANIVKI----GLES-DEYVQCGLVDMYGKCRLLRDAERVFELIVDK----K----NIASWNAMLVGYIRNGLYV 303 (340)
Q Consensus 237 ~~~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~----~----~~~~~~~li~~~~~~~~~~ 303 (340)
+...++..... +..+ ...++..+...|...|++++|.+.+++...- + ...++..+...|...|+++
T Consensus 246 -A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 246 -ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp -HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred -HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 66666554432 2111 2567888999999999999999999887651 2 2557888899999999999
Q ss_pred HHHHHHHHHHHc----CCcc-chhHHHHHHHHhhhcCcc
Q 044786 304 EATKFLYLMKAS----GIQI-QESLINDLRIACSSISAS 337 (340)
Q Consensus 304 ~a~~~~~~m~~~----g~~~-~~~t~~~ll~a~~~~g~~ 337 (340)
+|.+.+++..+. |-.+ ...++..+-..+...|..
T Consensus 325 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 325 QAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 999999986544 3222 234555566666666644
No 51
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.56 E-value=8.5e-12 Score=117.73 Aligned_cols=280 Identities=9% Similarity=0.084 Sum_probs=200.7
Q ss_pred CCcchhHHHHHHhhhccchhhHHHHHHHHHhhcC--CCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCcCCcccHHHHHH
Q 044786 8 ITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVN--IKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIV 85 (340)
Q Consensus 8 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~ 85 (340)
.+++--...+++|...|.+.+|+++++.+... + +.-+....+.++....+. +..+..++.++...-+ ...+..
T Consensus 983 ~~PeeVs~~vKaf~~aglp~EaieLLEKivl~-~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~ 1057 (1630)
T 1xi4_A 983 QDPEEVSVTVKAFMTADLPNELIELLEKIVLD-NSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIAN 1057 (1630)
T ss_pred cCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcC-CCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHH
Confidence 34555677888888999999999999998844 2 123456667777666666 5566666655555222 445777
Q ss_pred HHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhh
Q 044786 86 GYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165 (340)
Q Consensus 86 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 165 (340)
.+...|.+++|..+|++... .....+.++. ..+++++|.++.++. -+..+|..+..++...
T Consensus 1058 Iai~lglyEEAf~IYkKa~~----------~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~ 1118 (1630)
T 1xi4_A 1058 IAISNELFEEAFAIFRKFDV----------NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQK 1118 (1630)
T ss_pred HHHhCCCHHHHHHHHHHcCC----------HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhC
Confidence 78889999999999998631 2222233332 667888888887754 2467888999999999
Q ss_pred cCHHHHHHHHHHcccCChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCChhhHHHHHHhcccCCchhchHHHHHHHH
Q 044786 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANI 245 (340)
Q Consensus 166 ~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~ 245 (340)
|++++|...|.+. .|...|..++.++.+.|++++|.+++....+.. ++......+..+|++.+++++ ...+.
T Consensus 1119 G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rlee-le~fI--- 1190 (1630)
T 1xi4_A 1119 GMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAE-LEEFI--- 1190 (1630)
T ss_pred CCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHH-HHHHH---
Confidence 9999999999765 567778889999999999999999998776653 333333358888888887753 33332
Q ss_pred HHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhcCCcHHHHHHHHHHHHHcCchHHHHHHHHHHHHcCCccchhHHH
Q 044786 246 VKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLIN 325 (340)
Q Consensus 246 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~ 325 (340)
. .++...|..+...|...|++++|..+|... ..|..+...|++.|++++|.+.+++- .+..+|.
T Consensus 1191 -~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWk 1254 (1630)
T 1xi4_A 1191 -N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWK 1254 (1630)
T ss_pred -h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHH
Confidence 1 445566777888888999999999999886 38888889999999999998888766 2445665
Q ss_pred HHHHHhhhcC
Q 044786 326 DLRIACSSIS 335 (340)
Q Consensus 326 ~ll~a~~~~g 335 (340)
.+-.+|...|
T Consensus 1255 ev~~acve~~ 1264 (1630)
T 1xi4_A 1255 EVCFACVDGK 1264 (1630)
T ss_pred HHHHHHhhhh
Confidence 5555554433
No 52
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.56 E-value=4.3e-13 Score=111.79 Aligned_cols=272 Identities=10% Similarity=-0.055 Sum_probs=186.7
Q ss_pred chhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCC----HHHHHHHHHHHHhcCChhHHHHHHhhcCc-----C----Cc
Q 044786 11 DMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPT----LLFLNRLLLMHVSCGQLDTARQLFDEMPL-----R----DF 77 (340)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~----~~ 77 (340)
..+......+...|++++|...|+.+.+. . +.+ ...+..+...+...|++++|.+.+++... + ..
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~-~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQV-G-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhh-C-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 34555667778899999999999999987 3 223 46788888999999999999999887652 1 23
Q ss_pred ccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccc--------------------hhhHH
Q 044786 78 NSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN--------------------MELGK 137 (340)
Q Consensus 78 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~--------------------~~~a~ 137 (340)
.++..+...+...|++++|...+++..+.............++..+...+...|+ +++|.
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 3677888889999999999999998876531111011224477788888888888 88888
Q ss_pred HHHHHHHHc----CCCC-chhHHHHHHHHHHhhcCHHHHHHHHHHcccC---------ChhhHHHHHHHHhccCchhHHH
Q 044786 138 QVHGLLFKL----GSSR-NISLTGSLINFYGKFRCLEDADFVFSQLKRH---------NTVVWTAKIVNNCREGHFHQVF 203 (340)
Q Consensus 138 ~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~li~~~~~~~~~~~a~ 203 (340)
+.++...+. +..+ ...++..+...|...|++++|...+++..+. ...++..+...+...|++++|.
T Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 243 (338)
T 3ro2_A 164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 243 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 887765432 1111 2335666777777777777777777765421 1225666666777777777777
Q ss_pred HHHHHHhhcccCCChhhHHHHHHhcccCCchhchHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhcC
Q 044786 204 NDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283 (340)
Q Consensus 204 ~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 283 (340)
..+++..... |+ .++. .....++..+...|...|++++|...+++....
T Consensus 244 ~~~~~al~~~--~~-------------~~~~----------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 292 (338)
T 3ro2_A 244 EYYKKTLLLA--RQ-------------LKDR----------------AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 292 (338)
T ss_dssp HHHHHHHHHH--HH-------------TTCH----------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--Hh-------------hcch----------------hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 7776654311 00 0000 011345667777888888888888888877541
Q ss_pred ----C----cHHHHHHHHHHHHHcCchHHHHHHHHHHHHc
Q 044786 284 ----K----NIASWNAMLVGYIRNGLYVEATKFLYLMKAS 315 (340)
Q Consensus 284 ----~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 315 (340)
+ ...++..+...|.+.|++++|...+++....
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 293 AQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 1 2446778888899999999999999988765
No 53
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.56 E-value=1.2e-12 Score=111.04 Aligned_cols=241 Identities=10% Similarity=0.027 Sum_probs=192.9
Q ss_pred cchhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHhhcCc---CCcccHHHHHH
Q 044786 10 TDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQ-LDTARQLFDEMPL---RDFNSWAVMIV 85 (340)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~---~~~~~~~~li~ 85 (340)
...|..+...+.+.|++++|++.++..... -+-+...|+.+..++.+.|+ +++|+..|++... .+...|+.+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 356777888888999999999999999987 34568899999999999997 9999999999873 35668999999
Q ss_pred HHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHh-
Q 044786 86 GYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK- 164 (340)
Q Consensus 86 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 164 (340)
.+...|++++|+..|+++++.. +-+...|..+..++.+.|++++|...++.+++.... +...|+.+..++.+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld------P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l 247 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD------AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNT 247 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHccCHHHHHHHHHHHHHhC------ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHh
Confidence 9999999999999999999985 567789999999999999999999999999998755 77889999999999
Q ss_pred hcCHHHH-----HHHHHHccc--C-ChhhHHHHHHHHhccC--chhHHHHHHHHHhhcccCC-ChhhHHHHHHhcccCC-
Q 044786 165 FRCLEDA-----DFVFSQLKR--H-NTVVWTAKIVNNCREG--HFHQVFNDFKEMGRERIKK-NSYTFSSVLKACGGVD- 232 (340)
Q Consensus 165 ~~~~~~a-----~~~~~~~~~--~-~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~~- 232 (340)
.|..++| ...|++..+ | +...|+.+...+...| ++++|++.++++ + ..| +...+..+...+.+.|
T Consensus 248 ~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~--~~p~~~~al~~La~~~~~~~~ 324 (382)
T 2h6f_A 248 TGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q--PSHSSPYLIAFLVDIYEDMLE 324 (382)
T ss_dssp TCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T--TTCCCHHHHHHHHHHHHHHHH
T ss_pred cCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c--cCCCCHHHHHHHHHHHHHHhc
Confidence 6665777 477777643 3 6778999999999888 689999999988 3 344 4566778888887764
Q ss_pred -------c-hhchHHHHHHHH-HHhCCCc-cHHHHHHHHHHHh
Q 044786 233 -------D-DGNCGRQMHANI-VKIGLES-DEYVQCGLVDMYG 265 (340)
Q Consensus 233 -------~-~~~~~~~~~~~~-~~~~~~~-~~~~~~~li~~~~ 265 (340)
+ .++ +..+++.+ .+ +.| ....|..+...+.
T Consensus 325 ~~~~~~~~~~~~-A~~~~~~l~~~--~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 325 NQCDNKEDILNK-ALELCEILAKE--KDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp TTCSSHHHHHHH-HHHHHHHHHHT--TCGGGHHHHHHHHHHHH
T ss_pred ccccchHHHHHH-HHHHHHHHHHH--hCchhHHHHHHHHHHHH
Confidence 2 234 66777766 33 344 4455555554443
No 54
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.55 E-value=4.6e-13 Score=115.33 Aligned_cols=268 Identities=10% Similarity=-0.026 Sum_probs=204.0
Q ss_pred hhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCH----HHHHHHHHHHHhcCChhHHHHHHhhcCcC---------Ccc
Q 044786 12 MYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTL----LFLNRLLLMHVSCGQLDTARQLFDEMPLR---------DFN 78 (340)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~---------~~~ 78 (340)
.+..+...+...|++++|.+.|+.+.+. . +.+. ..+..+...+...|++++|.+.|++.... ...
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~-~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQA-G-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHh-c-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 3455667788999999999999999987 3 2233 57888899999999999999999887521 234
Q ss_pred cHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccc-----------------hhhHHHHHH
Q 044786 79 SWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN-----------------MELGKQVHG 141 (340)
Q Consensus 79 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-----------------~~~a~~~~~ 141 (340)
++..+...|...|++++|.+.+++................++..+...+...|+ +++|.+.++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 688888999999999999999999887621110013345688889999999999 999999988
Q ss_pred HHHHc----CCC-CchhHHHHHHHHHHhhcCHHHHHHHHHHcccC-----C----hhhHHHHHHHHhccCchhHHHHHHH
Q 044786 142 LLFKL----GSS-RNISLTGSLINFYGKFRCLEDADFVFSQLKRH-----N----TVVWTAKIVNNCREGHFHQVFNDFK 207 (340)
Q Consensus 142 ~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~----~~~~~~li~~~~~~~~~~~a~~~~~ 207 (340)
+..+. +.. ....++..+...|...|++++|...+++..+. + ..++..+...|...|++++|...++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 76543 211 12347788899999999999999999987532 1 2378889999999999999999999
Q ss_pred HHhhcccC-C----ChhhHHHHHHhcccCCchhchHHHHHHHHHHh----CCC-ccHHHHHHHHHHHhccCCHHHHHHHH
Q 044786 208 EMGRERIK-K----NSYTFSSVLKACGGVDDDGNCGRQMHANIVKI----GLE-SDEYVQCGLVDMYGKCRLLRDAERVF 277 (340)
Q Consensus 208 ~m~~~~~~-p----~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~~~~~~A~~~~ 277 (340)
+....... . ...++..+...+...|++++ +...++..... +.. ....++..+...|.+.|++++|.+.+
T Consensus 288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 366 (411)
T 4a1s_A 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNT-AIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYA 366 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 88653211 1 14567788888999999977 66666554432 211 13457888999999999999999999
Q ss_pred HHhhc
Q 044786 278 ELIVD 282 (340)
Q Consensus 278 ~~~~~ 282 (340)
++...
T Consensus 367 ~~al~ 371 (411)
T 4a1s_A 367 EQHLQ 371 (411)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98764
No 55
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.54 E-value=7.3e-13 Score=110.41 Aligned_cols=258 Identities=11% Similarity=-0.019 Sum_probs=162.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHhhcCc--C-C----cccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHH
Q 044786 48 FLNRLLLMHVSCGQLDTARQLFDEMPL--R-D----FNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWII 120 (340)
Q Consensus 48 ~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ 120 (340)
.+......+...|++++|...|++..+ | + ...+..+...+...|++++|.+.+++...........+....++
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 334445667777888888888877652 2 2 23566777778888888888888877665421110012234567
Q ss_pred HHHHHHhhhccchhhHHHHHHHHHHcCCC-Cc----hhHHHHHHHHHHhhcC--------------------HHHHHHHH
Q 044786 121 VCVLKACVCTMNMELGKQVHGLLFKLGSS-RN----ISLTGSLINFYGKFRC--------------------LEDADFVF 175 (340)
Q Consensus 121 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~--------------------~~~a~~~~ 175 (340)
..+...+...|++++|...+++..+.... ++ ..++..+...|...|+ +++|.+.+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 77777777788888888777766543211 11 2356666677777777 66666666
Q ss_pred HHcccC---------ChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCChhhHHHHHHhcccCCchhchHHHHHHHHH
Q 044786 176 SQLKRH---------NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIV 246 (340)
Q Consensus 176 ~~~~~~---------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~ 246 (340)
++..+. ...++..+...+...|++++|...+++..+.. .
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------------------------------~ 214 (338)
T 3ro2_A 167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA--------------------------------K 214 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--------------------------------H
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH--------------------------------H
Confidence 554311 12345555666666666666666665554310 0
Q ss_pred HhCC-CccHHHHHHHHHHHhccCCHHHHHHHHHHhhcC----C----cHHHHHHHHHHHHHcCchHHHHHHHHHHHHcC-
Q 044786 247 KIGL-ESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK----K----NIASWNAMLVGYIRNGLYVEATKFLYLMKASG- 316 (340)
Q Consensus 247 ~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~----~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g- 316 (340)
..+. .....++..+...|...|++++|.+.+++.... + ...++..+...|...|++++|...+++.....
T Consensus 215 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 294 (338)
T 3ro2_A 215 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 294 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 0010 112346677888889999999999999887641 1 25578888899999999999999999876542
Q ss_pred ---Cc-cchhHHHHHHHHhhhcCcc
Q 044786 317 ---IQ-IQESLINDLRIACSSISAS 337 (340)
Q Consensus 317 ---~~-~~~~t~~~ll~a~~~~g~~ 337 (340)
-. ....++..+-..+...|+.
T Consensus 295 ~~~~~~~~~~~~~~la~~~~~~g~~ 319 (338)
T 3ro2_A 295 ELKDRIGEGRACWSLGNAYTALGNH 319 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCCh
Confidence 11 1234666666677766653
No 56
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.53 E-value=1.4e-12 Score=111.35 Aligned_cols=295 Identities=9% Similarity=-0.019 Sum_probs=207.6
Q ss_pred hhhccchhhHHHHHHHHHhhc-CCCCC--HHHHHHHHHHH--HhcCChhHHH-----------HHHhhcCcC--Ccc---
Q 044786 20 CTFQKDSAGAFELLNHIRKRV-NIKPT--LLFLNRLLLMH--VSCGQLDTAR-----------QLFDEMPLR--DFN--- 78 (340)
Q Consensus 20 ~~~~~~~~~a~~~~~~m~~~~-g~~~~--~~~~~~li~~~--~~~~~~~~a~-----------~~~~~~~~~--~~~--- 78 (340)
+.+.+++++|.++++.+.+.. ..+.| ...|-.++..- .-.+.++.+. +.++.+... +..
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 356889999999999998752 22233 33334443321 1223334444 555555421 111
Q ss_pred ---cHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCC-----
Q 044786 79 ---SWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSR----- 150 (340)
Q Consensus 79 ---~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----- 150 (340)
.+......+...|++++|.+.|++..+.-...+.......++..+...+...|+++.|...++...+.-...
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 181 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI 181 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence 122245567889999999999999987521221112245689999999999999999999999887642111
Q ss_pred -chhHHHHHHHHHHhhcCHHHHHHHHHHcccC---------ChhhHHHHHHHHhccCchhHHHHHHHHHhhc----ccCC
Q 044786 151 -NISLTGSLINFYGKFRCLEDADFVFSQLKRH---------NTVVWTAKIVNNCREGHFHQVFNDFKEMGRE----RIKK 216 (340)
Q Consensus 151 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p 216 (340)
...+++.+...|...|++++|...|++..+- ...++..+...|...|++++|...+++..+. +..|
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 261 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP 261 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch
Confidence 2357888899999999999999999887521 1247888999999999999999999998762 2223
Q ss_pred -ChhhHHHHHHhcccCCchhchHHHHHHHHHHh----CCCccHHHHHHHHHHHhccCC---HHHHHHHHHHhhcCC-cHH
Q 044786 217 -NSYTFSSVLKACGGVDDDGNCGRQMHANIVKI----GLESDEYVQCGLVDMYGKCRL---LRDAERVFELIVDKK-NIA 287 (340)
Q Consensus 217 -~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~li~~~~~~~~---~~~A~~~~~~~~~~~-~~~ 287 (340)
...++..+...+...|++++ |...++..... +-+.....+..+-..|...|+ +++|..++++....| ...
T Consensus 262 ~~~~~~~~l~~~~~~~g~~~~-A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~ 340 (383)
T 3ulq_A 262 SLPQAYFLITQIHYKLGKIDK-AHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLED 340 (383)
T ss_dssp GHHHHHHHHHHHHHHTTCHHH-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHH
Confidence 35668888889999999977 66665554432 222233446778888999999 889999998885444 344
Q ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHc
Q 044786 288 SWNAMLVGYIRNGLYVEATKFLYLMKAS 315 (340)
Q Consensus 288 ~~~~li~~~~~~~~~~~a~~~~~~m~~~ 315 (340)
.+..+...|...|++++|...+++..+.
T Consensus 341 ~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 341 FAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 6778889999999999999999987654
No 57
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.53 E-value=1.3e-11 Score=116.62 Aligned_cols=252 Identities=12% Similarity=0.040 Sum_probs=133.6
Q ss_pred HHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCcCCcccHHHHHHHHHcccChhH
Q 044786 16 LIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQE 95 (340)
Q Consensus 16 li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 95 (340)
+...+...|.+++|.++|++... .....+.++. ..+++++|.++.++.. +..+|..+..++...|++++
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~~------~~~A~~VLie---~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kE 1123 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFDV------NTSAVQVLIE---HIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKE 1123 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCC------HHHHHHHHHH---HHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHH
Confidence 44455566667777666666421 1112222222 4455666666665552 34456666666666666666
Q ss_pred HHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHH
Q 044786 96 CITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVF 175 (340)
Q Consensus 96 a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 175 (340)
|++.|.+. -+...|..++.++.+.|++++|.+++....+..- ++...+.++.+|.+.+++++.....
T Consensus 1124 AIdsYiKA-----------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~--e~~Idt~LafaYAKl~rleele~fI 1190 (1630)
T 1xi4_A 1124 AIDSYIKA-----------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAKTNRLAELEEFI 1190 (1630)
T ss_pred HHHHHHhc-----------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc--cccccHHHHHHHHhhcCHHHHHHHH
Confidence 66666432 3444555566666666666666666665555442 2222223666666666665433332
Q ss_pred HHcccCChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCChhhHHHHHHhcccCCchhchHHHHHHHHHHhCCCccHH
Q 044786 176 SQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEY 255 (340)
Q Consensus 176 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (340)
..++...|..+...|...|++++|..+|... ..|..+...+.+.|++++ |....+.. .+..
T Consensus 1191 ---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~-AIEaarKA------~n~~ 1251 (1630)
T 1xi4_A 1191 ---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQA-AVDGARKA------NSTR 1251 (1630)
T ss_pred ---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHH-HHHHHHHh------CCHH
Confidence 2334444555566666666666666666553 255556666666666544 33333322 2345
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhcCCcHHHHHHHHHHHHHcCchHHHHHHHHHH
Q 044786 256 VQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLM 312 (340)
Q Consensus 256 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 312 (340)
+|..+-.+|...|+++.|......+. .+...+..++.-|.+.|.+++|+.+++.-
T Consensus 1252 aWkev~~acve~~Ef~LA~~cgl~Ii--v~~deLeeli~yYe~~G~feEAI~LlE~a 1306 (1630)
T 1xi4_A 1252 TWKEVCFACVDGKEFRLAQMCGLHIV--VHADELEELINYYQDRGYFEELITMLEAA 1306 (1630)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHhhh--cCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555555555555555555544332 22333445555566666666666666444
No 58
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.53 E-value=1.1e-11 Score=100.62 Aligned_cols=189 Identities=10% Similarity=-0.050 Sum_probs=108.3
Q ss_pred CcchhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh----cCChhHHHHHHhhcCcC-CcccHHHH
Q 044786 9 TTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVS----CGQLDTARQLFDEMPLR-DFNSWAVM 83 (340)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~-~~~~~~~l 83 (340)
++.++..+...+...|++++|.+.|+...+. + +...+..+...+.. .+++++|.+.|++..+. +..++..+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l 80 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL-K---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLL 80 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3445555666666666666666666666653 2 34555556666666 66666666666665432 44455556
Q ss_pred HHHHHc----ccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhh----ccchhhHHHHHHHHHHcCCCCchhHH
Q 044786 84 IVGYVD----VADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVC----TMNMELGKQVHGLLFKLGSSRNISLT 155 (340)
Q Consensus 84 i~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 155 (340)
...|.. .+++++|++.|++..+.+ +...+..+...+.. .+++++|...++...+.+ +...+
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~--------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~ 149 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLK--------YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGC 149 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcC--------CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHH
Confidence 666666 666666666666665541 34455555555555 666666666666666554 34445
Q ss_pred HHHHHHHHh----hcCHHHHHHHHHHcccC-ChhhHHHHHHHHhc----cCchhHHHHHHHHHhhc
Q 044786 156 GSLINFYGK----FRCLEDADFVFSQLKRH-NTVVWTAKIVNNCR----EGHFHQVFNDFKEMGRE 212 (340)
Q Consensus 156 ~~l~~~~~~----~~~~~~a~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~ 212 (340)
..+...|.. .+++++|...|++..+. +...+..+...|.. .+++++|+..|++..+.
T Consensus 150 ~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~ 215 (273)
T 1ouv_A 150 TILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL 215 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhC
Confidence 555555555 55666666666554433 34445555555555 55556665555555543
No 59
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.53 E-value=5e-12 Score=110.95 Aligned_cols=305 Identities=8% Similarity=-0.050 Sum_probs=197.8
Q ss_pred cchhHHHHHHhhhccchhhHHHHHHHHHhhc----C-CC-CCHHHHHHHHHHHHhc--CChhHHHHHHhhcC--cC-Ccc
Q 044786 10 TDMYTCLIKECTFQKDSAGAFELLNHIRKRV----N-IK-PTLLFLNRLLLMHVSC--GQLDTARQLFDEMP--LR-DFN 78 (340)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~----g-~~-~~~~~~~~li~~~~~~--~~~~~a~~~~~~~~--~~-~~~ 78 (340)
..+|+.+...|...|++++|...++...... + .. ....++..+..++.+. +++++|.+.|++.. .| ++.
T Consensus 94 ~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~ 173 (472)
T 4g1t_A 94 LVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPE 173 (472)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHH
Confidence 4578889999999999999999999877531 0 11 2356666665555554 57999999999876 33 344
Q ss_pred cHHHHHHH---HHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhh----hccchhhHHHHHHHHHHcCCCCc
Q 044786 79 SWAVMIVG---YVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACV----CTMNMELGKQVHGLLFKLGSSRN 151 (340)
Q Consensus 79 ~~~~li~~---~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~ 151 (340)
.+..+... +...++.++|++.+++..+.. +.+..++..+...+. ..+++++|.+.++........ +
T Consensus 174 ~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~------p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~ 246 (472)
T 4g1t_A 174 FTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN------PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-V 246 (472)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC------SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-C
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC------CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-H
Confidence 45544444 345677889999999998874 345555655554444 346789999999998887644 6
Q ss_pred hhHHHHHHHHHHhhcCHHHHHHHHHHccc--C-ChhhHHHHHHHHhcc-------------------CchhHHHHHHHHH
Q 044786 152 ISLTGSLINFYGKFRCLEDADFVFSQLKR--H-NTVVWTAKIVNNCRE-------------------GHFHQVFNDFKEM 209 (340)
Q Consensus 152 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~-------------------~~~~~a~~~~~~m 209 (340)
..++..+...|...|++++|...|++..+ | +..++..+..+|... +.+++|...+++.
T Consensus 247 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 326 (472)
T 4g1t_A 247 TDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKA 326 (472)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 67888999999999999999999998763 2 455666665555332 3466788888877
Q ss_pred hhcccCCChhhHHHHHHhcccCCchhchHHHHHHHHHHhCCCccHH--HHHHHHH-HHhccCCHHHHHHHHHHhhc----
Q 044786 210 GRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEY--VQCGLVD-MYGKCRLLRDAERVFELIVD---- 282 (340)
Q Consensus 210 ~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~li~-~~~~~~~~~~A~~~~~~~~~---- 282 (340)
.+.. +.+..++..+...+...|++++ |...++........+... .+..+.. .+.+.|+.++|...|++...
T Consensus 327 ~~~~-~~~~~~~~~lg~~~~~~~~~~~-A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~ 404 (472)
T 4g1t_A 327 DEAN-DNLFRVCSILASLHALADQYEE-AEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQK 404 (472)
T ss_dssp HHHC-TTTCCCHHHHHHHHHHTTCHHH-HHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCC
T ss_pred hhcC-CchhhhhhhHHHHHHHhccHHH-HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc
Confidence 6643 2345667888888999999977 778887777655444321 2222222 23467889999888876532
Q ss_pred ----------------------CCcHHHHHHHHHHHHHcCchHHHHHHHHHHHHcCC-ccchhH
Q 044786 283 ----------------------KKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGI-QIQESL 323 (340)
Q Consensus 283 ----------------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~~~~~t 323 (340)
+.+..+|+.+...|...|++++|++.|++..+.|- .|+..+
T Consensus 405 ~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~ 468 (472)
T 4g1t_A 405 SREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASS 468 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC---------------------
T ss_pred cHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhh
Confidence 23567899999999999999999999999887753 354443
No 60
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.52 E-value=6.7e-13 Score=105.58 Aligned_cols=193 Identities=11% Similarity=0.026 Sum_probs=90.4
Q ss_pred cHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHH
Q 044786 79 SWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158 (340)
Q Consensus 79 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 158 (340)
.|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...++.+.+.... +...+..+
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l 97 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEEN------KEDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGA 97 (243)
T ss_dssp -----------------CCTTHHHHHTTC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhC------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHH
Confidence 34444445555555555555555555442 233444555555555555555555555555444321 33444444
Q ss_pred HHHHHhhcCHHHHHHHHHHccc---CChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCChhhHHHHHHhcccCCchh
Q 044786 159 INFYGKFRCLEDADFVFSQLKR---HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDG 235 (340)
Q Consensus 159 ~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~ 235 (340)
...|...|++++|.+.++++.+ .+...+..+...+...|++++|...+++..+.. |
T Consensus 98 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~------------------- 156 (243)
T 2q7f_A 98 GNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN--E------------------- 156 (243)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--T-------------------
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--C-------------------
Confidence 5555555555555555544331 133344445555555555555555555544321 1
Q ss_pred chHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhc--CCcHHHHHHHHHHHHHcCchHHHHHHHHHHH
Q 044786 236 NCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD--KKNIASWNAMLVGYIRNGLYVEATKFLYLMK 313 (340)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 313 (340)
.+...+..+...|.+.|++++|.+.+++... +.+..+|..+...|.+.|++++|.+.+++..
T Consensus 157 ----------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 220 (243)
T 2q7f_A 157 ----------------NDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAI 220 (243)
T ss_dssp ----------------TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred ----------------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 1233444555556666666666666665544 2345566666666666666666666666665
Q ss_pred Hc
Q 044786 314 AS 315 (340)
Q Consensus 314 ~~ 315 (340)
+.
T Consensus 221 ~~ 222 (243)
T 2q7f_A 221 DI 222 (243)
T ss_dssp HH
T ss_pred cc
Confidence 54
No 61
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.47 E-value=1.1e-10 Score=103.99 Aligned_cols=295 Identities=9% Similarity=-0.012 Sum_probs=208.4
Q ss_pred cchhHHHHHHhhh---------ccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHH-------------HhcCChhHHHH
Q 044786 10 TDMYTCLIKECTF---------QKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMH-------------VSCGQLDTARQ 67 (340)
Q Consensus 10 ~~~~~~li~~~~~---------~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~-------------~~~~~~~~a~~ 67 (340)
...|...+....+ .|+++.|..+|+...+. ...+....|....... .+.++++.|..
T Consensus 121 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~-P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~ 199 (530)
T 2ooe_A 121 YQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN-PMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARR 199 (530)
T ss_dssp HHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS-CCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc-hhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHH
Confidence 4456666665543 78999999999999864 3222234444332211 13456677776
Q ss_pred HHhh-------cC------cCC--------cccHHHHHHHHHcc----cCh----hHHHHHHHHHHHhhcCCccccchHH
Q 044786 68 LFDE-------MP------LRD--------FNSWAVMIVGYVDV----ADY----QECITLFAEMMKRKKGHMLLVFPAW 118 (340)
Q Consensus 68 ~~~~-------~~------~~~--------~~~~~~li~~~~~~----g~~----~~a~~~~~~m~~~~~~~~~~~~~~~ 118 (340)
+++. +. .|+ ...|...+...... ++. .++..+|++..... +.+..
T Consensus 200 ~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~------p~~~~ 273 (530)
T 2ooe_A 200 VAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL------GHHPD 273 (530)
T ss_dssp HHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH------TTCHH
T ss_pred HHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC------CCCHH
Confidence 6654 11 111 12444444332221 232 37788999999884 45677
Q ss_pred HHHHHHHHhhh-------ccchh-------hHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHccc--C-
Q 044786 119 IIVCVLKACVC-------TMNME-------LGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR--H- 181 (340)
Q Consensus 119 ~~~~ll~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~- 181 (340)
.|......+.+ .|+++ +|..+++...+.-.+.+...+..++..+.+.|++++|..+|+++.+ |
T Consensus 274 ~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 353 (530)
T 2ooe_A 274 IWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI 353 (530)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS
T ss_pred HHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc
Confidence 88888887775 68877 8999999988632234678899999999999999999999999764 3
Q ss_pred Ch-hhHHHHHHHHhccCchhHHHHHHHHHhhcccCCC-hhhHHHHH-HhcccCCchhchHHHHHHHHHHhCCCccHHHHH
Q 044786 182 NT-VVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKN-SYTFSSVL-KACGGVDDDGNCGRQMHANIVKIGLESDEYVQC 258 (340)
Q Consensus 182 ~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~t~~~ll-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (340)
+. ..|..++..+.+.|++++|..+|++..+. .|+ ...|.... ..+...|+.++ +..+++...+.. +-++..|.
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~-A~~~~e~al~~~-p~~~~~~~ 429 (530)
T 2ooe_A 354 DPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSV-AFKIFELGLKKY-GDIPEYVL 429 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHH-HHHHHHHHHHHH-TTCHHHHH
T ss_pred CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHcCChhH-HHHHHHHHHHHC-CCCHHHHH
Confidence 32 47999999999999999999999999875 333 22232211 12335788866 888888776653 34688999
Q ss_pred HHHHHHhccCCHHHHHHHHHHhhcC-C-c----HHHHHHHHHHHHHcCchHHHHHHHHHHHHc
Q 044786 259 GLVDMYGKCRLLRDAERVFELIVDK-K-N----IASWNAMLVGYIRNGLYVEATKFLYLMKAS 315 (340)
Q Consensus 259 ~li~~~~~~~~~~~A~~~~~~~~~~-~-~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 315 (340)
.++..+.+.|+.++|..+|++.... | + ...|...+......|+.+.+..+++++.+.
T Consensus 430 ~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 430 AYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999998763 2 2 348888898889999999999999998765
No 62
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.47 E-value=7.2e-12 Score=95.28 Aligned_cols=160 Identities=10% Similarity=-0.004 Sum_probs=88.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHhhcCc---CCcccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHH
Q 044786 45 TLLFLNRLLLMHVSCGQLDTARQLFDEMPL---RDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIV 121 (340)
Q Consensus 45 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~ 121 (340)
++.+|..+...|.+.|++++|++.|++..+ .+..+|..+...+.+.|++++|+..+....... +.+...+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~ 77 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD------TTSAEAYY 77 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------CCCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC------chhHHHHH
Confidence 344555555555555555555555555441 233345555555555555555555555555542 23344445
Q ss_pred HHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHccc---CChhhHHHHHHHHhccCc
Q 044786 122 CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR---HNTVVWTAKIVNNCREGH 198 (340)
Q Consensus 122 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~ 198 (340)
.+...+...++++.+...+....+.... +...+..+...|.+.|++++|.+.|++..+ .+..+|..+..+|.+.|+
T Consensus 78 ~~~~~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~ 156 (184)
T 3vtx_A 78 ILGSANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGL 156 (184)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCC
Confidence 5555555555555555555555554322 444555556666666666666666665432 244556666666666666
Q ss_pred hhHHHHHHHHHhh
Q 044786 199 FHQVFNDFKEMGR 211 (340)
Q Consensus 199 ~~~a~~~~~~m~~ 211 (340)
+++|+..|++..+
T Consensus 157 ~~~A~~~~~~al~ 169 (184)
T 3vtx_A 157 RDEAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 6666666666655
No 63
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.47 E-value=1.1e-10 Score=96.40 Aligned_cols=213 Identities=9% Similarity=-0.021 Sum_probs=166.1
Q ss_pred hHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhh-------ccch-------hhHHHHHHHHHHc-CCCCchhHHHHH
Q 044786 94 QECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVC-------TMNM-------ELGKQVHGLLFKL-GSSRNISLTGSL 158 (340)
Q Consensus 94 ~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~-------~~~~-------~~a~~~~~~~~~~-~~~~~~~~~~~l 158 (340)
++|..+|++..... +.+...|..+...+.. .|++ ++|..+|++..+. .. .+...|..+
T Consensus 33 ~~a~~~~~~al~~~------p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p-~~~~~~~~~ 105 (308)
T 2ond_A 33 KRVMFAYEQCLLVL------GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK-KNMLLYFAY 105 (308)
T ss_dssp HHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTT-TCHHHHHHH
T ss_pred HHHHHHHHHHHHHc------CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCc-ccHHHHHHH
Confidence 67888999998874 5566677777777653 4775 8999999999884 42 356688999
Q ss_pred HHHHHhhcCHHHHHHHHHHcccC---Chh-hHHHHHHHHhccCchhHHHHHHHHHhhcccCCChhhHHHHHHh-cccCCc
Q 044786 159 INFYGKFRCLEDADFVFSQLKRH---NTV-VWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKA-CGGVDD 233 (340)
Q Consensus 159 ~~~~~~~~~~~~a~~~~~~~~~~---~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~-~~~~~~ 233 (340)
...+.+.|++++|.++|++..+. +.. .|..+...+.+.|++++|..+|++..+.. +++...|...... +...|+
T Consensus 106 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~ 184 (308)
T 2ond_A 106 ADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKD 184 (308)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCC
T ss_pred HHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCC
Confidence 99999999999999999998643 343 79999999999999999999999998753 2233344332222 223688
Q ss_pred hhchHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhc----CC--cHHHHHHHHHHHHHcCchHHHHH
Q 044786 234 DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD----KK--NIASWNAMLVGYIRNGLYVEATK 307 (340)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~----~~--~~~~~~~li~~~~~~~~~~~a~~ 307 (340)
.++ +..+++...+.. +-+...|..++..+.+.|++++|..+|++... .| ....|..++..+.+.|+.++|..
T Consensus 185 ~~~-A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~ 262 (308)
T 2ond_A 185 KSV-AFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILK 262 (308)
T ss_dssp HHH-HHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHH-HHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 866 777877776653 34778899999999999999999999999987 23 45689999999999999999999
Q ss_pred HHHHHHHcC
Q 044786 308 FLYLMKASG 316 (340)
Q Consensus 308 ~~~~m~~~g 316 (340)
+++++.+..
T Consensus 263 ~~~~a~~~~ 271 (308)
T 2ond_A 263 VEKRRFTAF 271 (308)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHc
Confidence 999987663
No 64
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.47 E-value=8.2e-12 Score=94.96 Aligned_cols=166 Identities=11% Similarity=0.013 Sum_probs=133.8
Q ss_pred CcchhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCc---CCcccHHHHHH
Q 044786 9 TTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL---RDFNSWAVMIV 85 (340)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~ 85 (340)
++..|..+-..+.+.|++++|++.|++..+. -+-+...+..+..++.+.|++++|.+.++.... .+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 5667888888888899999999999988876 344677888888888999999999988887762 34446777777
Q ss_pred HHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhh
Q 044786 86 GYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165 (340)
Q Consensus 86 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 165 (340)
.+...++++.+.+.+.+..... +.+...+..+...+.+.|++++|.+.|+...+..+. +..++..+..+|.+.
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~ 154 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN------TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGK 154 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHHhC------ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHC
Confidence 8888889999999998888774 455677888888888899999999999888887643 677888888889999
Q ss_pred cCHHHHHHHHHHcccCCh
Q 044786 166 RCLEDADFVFSQLKRHNT 183 (340)
Q Consensus 166 ~~~~~a~~~~~~~~~~~~ 183 (340)
|++++|.+.|++..+.+.
T Consensus 155 g~~~~A~~~~~~al~~~p 172 (184)
T 3vtx_A 155 GLRDEAVKYFKKALEKEE 172 (184)
T ss_dssp TCHHHHHHHHHHHHHTTH
T ss_pred CCHHHHHHHHHHHHhCCc
Confidence 999999998888765543
No 65
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.43 E-value=1.7e-10 Score=98.19 Aligned_cols=307 Identities=11% Similarity=-0.019 Sum_probs=209.4
Q ss_pred CCcchhHHHHHHh--hhccchhhHHHHHHHHHhhc-CCCCC--HHHHHHHHHHH--HhcCChhHHH---------HHHhh
Q 044786 8 ITTDMYTCLIKEC--TFQKDSAGAFELLNHIRKRV-NIKPT--LLFLNRLLLMH--VSCGQLDTAR---------QLFDE 71 (340)
Q Consensus 8 ~~~~~~~~li~~~--~~~~~~~~a~~~~~~m~~~~-g~~~~--~~~~~~li~~~--~~~~~~~~a~---------~~~~~ 71 (340)
|+...=+.+-.-| .+.+++++|.++++.+.+.. ....| ...|-.++..- .-.+.++.+. +.++.
T Consensus 8 ~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ 87 (378)
T 3q15_A 8 PSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLET 87 (378)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHH
Confidence 3333334444444 67899999999999987652 22223 33344444321 1112222222 44444
Q ss_pred cC---cCCc--c---cHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHH
Q 044786 72 MP---LRDF--N---SWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLL 143 (340)
Q Consensus 72 ~~---~~~~--~---~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 143 (340)
+. .+.. . .|-.....+...|++++|+..|++........+.......++..+...+...|+++.|...++..
T Consensus 88 i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~a 167 (378)
T 3q15_A 88 IETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQA 167 (378)
T ss_dssp HHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 43 2211 1 12233445678999999999999998763222111234568889999999999999999999887
Q ss_pred HHcCC-----CC-chhHHHHHHHHHHhhcCHHHHHHHHHHcccC---------ChhhHHHHHHHHhccCchhHHHHHHHH
Q 044786 144 FKLGS-----SR-NISLTGSLINFYGKFRCLEDADFVFSQLKRH---------NTVVWTAKIVNNCREGHFHQVFNDFKE 208 (340)
Q Consensus 144 ~~~~~-----~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~li~~~~~~~~~~~a~~~~~~ 208 (340)
.+... .+ ...+++.+...|...|++++|.+.|++..+- ...+++.+...|...|++++|...+++
T Consensus 168 l~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~ 247 (378)
T 3q15_A 168 LDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQK 247 (378)
T ss_dssp HHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 65421 11 2457788999999999999999999886531 234688899999999999999999999
Q ss_pred Hhhc----ccCCChhhHHHHHHhcccCCchhchHHHHHHHHHHhC----CCccHHHHHHHHHHHhccCC---HHHHHHHH
Q 044786 209 MGRE----RIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIG----LESDEYVQCGLVDMYGKCRL---LRDAERVF 277 (340)
Q Consensus 209 m~~~----~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~li~~~~~~~~---~~~A~~~~ 277 (340)
..+. +.+....++..+...+.+.|++++ |...++...... -+.....+..+-..|...++ +.+|...+
T Consensus 248 al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~ 326 (378)
T 3q15_A 248 AAKVSREKVPDLLPKVLFGLSWTLCKAGQTQK-AFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYF 326 (378)
T ss_dssp HHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHH-HHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHhhCChhHHHHHHHHHHHHHHCCCHHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 8761 222235677888889999999977 777766665542 23334566777778888888 88899888
Q ss_pred HHhhcCC-cHHHHHHHHHHHHHcCchHHHHHHHHHHHHc
Q 044786 278 ELIVDKK-NIASWNAMLVGYIRNGLYVEATKFLYLMKAS 315 (340)
Q Consensus 278 ~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 315 (340)
+.....+ ....+..+...|...|++++|...|++..+.
T Consensus 327 ~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 327 EKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 8865433 3346678889999999999999999987543
No 66
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.42 E-value=2e-11 Score=106.46 Aligned_cols=281 Identities=11% Similarity=-0.051 Sum_probs=146.2
Q ss_pred HHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCh---hHHHHHHhhcCcCCcccHHHHHHHHHccc
Q 044786 15 CLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQL---DTARQLFDEMPLRDFNSWAVMIVGYVDVA 91 (340)
Q Consensus 15 ~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~li~~~~~~g 91 (340)
.+...+.+.|++++|.++|+...+. |. ...+..|-..|...|+. ++|.+.|++..+.++..+..+...+...+
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~-g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~ 83 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAEL-GY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKP 83 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-TC---CTGGGTCC----------------------------CHHHHHHHHHTC-
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHC-CC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCC
Confidence 3566778899999999999999887 63 33444555666667777 89999999888777777888877555554
Q ss_pred -----ChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccch---hhHHHHHHHHHHcCC---------------
Q 044786 92 -----DYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNM---ELGKQVHGLLFKLGS--------------- 148 (340)
Q Consensus 92 -----~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~--------------- 148 (340)
++++|++.|++..+.+ .++ .+..+...+...+.. ..+.+.+......|.
T Consensus 84 ~~~~~~~~~A~~~~~~Aa~~g------~~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 84 GATEAEHHEAESLLKKAFANG------EGN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQG 155 (452)
T ss_dssp -CCHHHHHHHHHHHHHHHHTT------CSS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHT
T ss_pred CCCCcCHHHHHHHHHHHHHCC------CHH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC
Confidence 7889999999988874 222 333444444433322 222222222222221
Q ss_pred -----------------CCchhHHHHHHHHHHhhc---CHHHHHHHHHHcccC---ChhhHHHHHHHHhcc----CchhH
Q 044786 149 -----------------SRNISLTGSLINFYGKFR---CLEDADFVFSQLKRH---NTVVWTAKIVNNCRE----GHFHQ 201 (340)
Q Consensus 149 -----------------~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~----~~~~~ 201 (340)
..++..+..|...|.+.| +.++|.+.|++..+. +...+..+...|... +++++
T Consensus 156 ~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~ 235 (452)
T 3e4b_A 156 TYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKT 235 (452)
T ss_dssp CGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHH
T ss_pred CcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHH
Confidence 223335555666666666 666666666665433 222234555555443 56666
Q ss_pred HHHHHHHHhhcccCCChhhHHHHHHh-c--ccCCchhchHHHHHHHHHHhCCCccHHHHHHHHHHHhccC-----CHHHH
Q 044786 202 VFNDFKEMGRERIKKNSYTFSSVLKA-C--GGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCR-----LLRDA 273 (340)
Q Consensus 202 a~~~~~~m~~~~~~p~~~t~~~ll~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-----~~~~A 273 (340)
|+..|++.. .|. ...+..+-.. + ...++.++ +..+++...+.| ++..+..|-..|. .| ++++|
T Consensus 236 A~~~~~~aa-~g~---~~a~~~Lg~~~~~~~~~~d~~~-A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A 306 (452)
T 3e4b_A 236 AQALLEKIA-PGY---PASWVSLAQLLYDFPELGDVEQ-MMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAA 306 (452)
T ss_dssp HHHHHHHHG-GGS---THHHHHHHHHHHHSGGGCCHHH-HHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHH
T ss_pred HHHHHHHHc-CCC---HHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHH
Confidence 666666665 322 2222222222 1 33556544 555555555554 4444555555555 34 67777
Q ss_pred HHHHHHhhcCCcHHHHHHHHHHHHH----cCchHHHHHHHHHHHHcCC
Q 044786 274 ERVFELIVDKKNIASWNAMLVGYIR----NGLYVEATKFLYLMKASGI 317 (340)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~ 317 (340)
.+.|++.. ..++..+..|...|.. ..++++|..+|++..+.|.
T Consensus 307 ~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 307 EAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp HHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence 77777776 5566666666665554 3377777777777766664
No 67
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.42 E-value=1.2e-11 Score=108.63 Aligned_cols=210 Identities=11% Similarity=-0.066 Sum_probs=136.0
Q ss_pred hhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccch-hhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHH
Q 044786 93 YQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNM-ELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171 (340)
Q Consensus 93 ~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 171 (340)
++++++.+++..... +.+...+..+...+...|++ ++|.+.|+...+.... +...|..+...|.+.|++++|
T Consensus 84 ~~~al~~l~~~~~~~------~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A 156 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA------QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSA 156 (474)
T ss_dssp HHHHHHHHHHHHTTC------CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHhccC------chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHH
Confidence 344455555444331 33555666666666666776 7777777666665432 455666666777777777777
Q ss_pred HHHHHHcc--cCChhhHHHHHHHHhcc---------CchhHHHHHHHHHhhcccCC-ChhhHHHHHHhcccC--------
Q 044786 172 DFVFSQLK--RHNTVVWTAKIVNNCRE---------GHFHQVFNDFKEMGRERIKK-NSYTFSSVLKACGGV-------- 231 (340)
Q Consensus 172 ~~~~~~~~--~~~~~~~~~li~~~~~~---------~~~~~a~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~-------- 231 (340)
.+.|++.. .|+...+..+...|... |++++|+..|++..+. .| +...|..+..++...
T Consensus 157 ~~~~~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~ 234 (474)
T 4abn_A 157 HTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNP 234 (474)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhcccc
Confidence 77776654 23445566666666666 7777777777776664 23 345566666666655
Q ss_pred CchhchHHHHHHHHHHhCCC--ccHHHHHHHHHHHhccCCHHHHHHHHHHhhc--CCcHHHHHHHHHHHHHcCchHHHHH
Q 044786 232 DDDGNCGRQMHANIVKIGLE--SDEYVQCGLVDMYGKCRLLRDAERVFELIVD--KKNIASWNAMLVGYIRNGLYVEATK 307 (340)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~ 307 (340)
|++++ |...++...+.... -+...|..+..+|...|++++|.+.|++... +.+...+..+...+...|++++|++
T Consensus 235 g~~~~-A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 235 KISQQ-ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp HHHHH-HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHH-HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 66655 55555555554210 3677788888888888888888888888765 3466678888888888888888887
Q ss_pred HHHHH
Q 044786 308 FLYLM 312 (340)
Q Consensus 308 ~~~~m 312 (340)
.+.++
T Consensus 314 ~~~~~ 318 (474)
T 4abn_A 314 SKGKT 318 (474)
T ss_dssp HTTTC
T ss_pred Hhccc
Confidence 65543
No 68
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.41 E-value=2e-11 Score=100.74 Aligned_cols=237 Identities=8% Similarity=0.004 Sum_probs=163.5
Q ss_pred ccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCc--cccchHHHHHHHHHHhhhccchhhHHHHHHHHHHc------CCC
Q 044786 78 NSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM--LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKL------GSS 149 (340)
Q Consensus 78 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~ 149 (340)
.++..+...+...|++++|...++++.+...... ..+....++..+...+...|++++|...++...+. +-.
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3688889999999999999999999998831110 01334567888999999999999999999988765 222
Q ss_pred -CchhHHHHHHHHHHhhcCHHHHHHHHHHcccC-----------ChhhHHHHHHHHhccCchhHHHHHHHHHhhc-----
Q 044786 150 -RNISLTGSLINFYGKFRCLEDADFVFSQLKRH-----------NTVVWTAKIVNNCREGHFHQVFNDFKEMGRE----- 212 (340)
Q Consensus 150 -~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----- 212 (340)
....++..+...|...|++++|...|++..+. ....+..+...+...|++++|..++++..+.
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 24567888999999999999999999886531 3456888889999999999999999998764
Q ss_pred -ccCCC-hhhHHHHHHhcccCCchhchHHHHHHHHHHh-------CCCc-------cHHHHHHHHHHHhccCCHHHHHHH
Q 044786 213 -RIKKN-SYTFSSVLKACGGVDDDGNCGRQMHANIVKI-------GLES-------DEYVQCGLVDMYGKCRLLRDAERV 276 (340)
Q Consensus 213 -~~~p~-~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~-------~~~~-------~~~~~~~li~~~~~~~~~~~A~~~ 276 (340)
+..|. ..++..+...+...|++++ +...++..... ...+ ....+..+...+...+.+.+|...
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 266 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQ-AETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGW 266 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHH-HHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC--
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 21332 3467778888889999877 66666655542 1111 122223333334444555556666
Q ss_pred HHHhhcC--CcHHHHHHHHHHHHHcCchHHHHHHHHHHHHc
Q 044786 277 FELIVDK--KNIASWNAMLVGYIRNGLYVEATKFLYLMKAS 315 (340)
Q Consensus 277 ~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 315 (340)
++..... .+..+|..+...|.+.|++++|.+.|++..+.
T Consensus 267 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 267 YKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp -------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 6665542 35668889999999999999999999987653
No 69
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.41 E-value=4.9e-12 Score=111.01 Aligned_cols=201 Identities=8% Similarity=-0.023 Sum_probs=152.2
Q ss_pred cchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHhhcCc---CCcccHHHHHHHHHcccChhHHHHH
Q 044786 24 KDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQL-DTARQLFDEMPL---RDFNSWAVMIVGYVDVADYQECITL 99 (340)
Q Consensus 24 ~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~ 99 (340)
..++++++.++..... -+.+...+..+...+...|++ ++|++.|++..+ .+...|..+...|...|++++|.+.
T Consensus 82 ~~~~~al~~l~~~~~~--~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGS--AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHHHTT--CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc--CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3567777777766544 334677788888888888888 888888887762 2455788888888888888888888
Q ss_pred HHHHHHhhcCCccccchHHHHHHHHHHhhhc---------cchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhh-----
Q 044786 100 FAEMMKRKKGHMLLVFPAWIIVCVLKACVCT---------MNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF----- 165 (340)
Q Consensus 100 ~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 165 (340)
|++..+. .|+...+..+...+... |++++|.+.+++..+.... +...|..+..+|...
T Consensus 160 ~~~al~~-------~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~ 231 (474)
T 4abn_A 160 FSGALTH-------CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTG 231 (474)
T ss_dssp HHHHHTT-------CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhh-------CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhc
Confidence 8888876 46678888888888888 8888888888888887754 667788888888888
Q ss_pred ---cCHHHHHHHHHHccc------CChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCC-hhhHHHHHHhcccCCchh
Q 044786 166 ---RCLEDADFVFSQLKR------HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKN-SYTFSSVLKACGGVDDDG 235 (340)
Q Consensus 166 ---~~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~ 235 (340)
|++++|...|++..+ .+...|..+..+|...|++++|...|++..+. .|+ ...+..+...+...|+.+
T Consensus 232 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~a~~~l~~~~~~lg~~~ 309 (474)
T 4abn_A 232 QNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL--DPAWPEPQQREQQLLEFLSRLT 309 (474)
T ss_dssp CCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHH
Confidence 888888888888653 35667888888888888888888888888764 343 445666666666666665
Q ss_pred c
Q 044786 236 N 236 (340)
Q Consensus 236 ~ 236 (340)
+
T Consensus 310 e 310 (474)
T 4abn_A 310 S 310 (474)
T ss_dssp H
T ss_pred H
Confidence 5
No 70
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.40 E-value=9.4e-12 Score=102.65 Aligned_cols=238 Identities=11% Similarity=0.020 Sum_probs=164.2
Q ss_pred CCcchhHHHHHHhhhccchhhHHHHHHHHHhhc------CCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCc-------
Q 044786 8 ITTDMYTCLIKECTFQKDSAGAFELLNHIRKRV------NIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL------- 74 (340)
Q Consensus 8 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~------g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~------- 74 (340)
.+..++..+...+...|++++|..+++.+.+.. ..+....++..+...+...|++++|.+.+++...
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 345678888999999999999999999988731 1233457788899999999999999999988762
Q ss_pred C----CcccHHHHHHHHHcccChhHHHHHHHHHHHhhcCC--ccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHc--
Q 044786 75 R----DFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGH--MLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKL-- 146 (340)
Q Consensus 75 ~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~--~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-- 146 (340)
+ ...++..+...+...|++++|.+.+++..+..... ...+.....+..+...+...|++++|.++++...+.
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 184 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 184 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 2 23368888999999999999999999988762000 000334567888999999999999999999988775
Q ss_pred ----CCCC-chhHHHHHHHHHHhhcCHHHHHHHHHHcccC------------------ChhhHHHHHHHHhccCchhHHH
Q 044786 147 ----GSSR-NISLTGSLINFYGKFRCLEDADFVFSQLKRH------------------NTVVWTAKIVNNCREGHFHQVF 203 (340)
Q Consensus 147 ----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------------------~~~~~~~li~~~~~~~~~~~a~ 203 (340)
+..| ...++..+...|...|++++|.+.|++..+. ....+..+...+...+.+.++.
T Consensus 185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 264 (311)
T 3nf1_A 185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYG 264 (311)
T ss_dssp HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 2223 3457888999999999999999999887632 1112333334444555666666
Q ss_pred HHHHHHhhcccCCChhhHHHHHHhcccCCchhchHHHHHHHHHH
Q 044786 204 NDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVK 247 (340)
Q Consensus 204 ~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~ 247 (340)
..++...... +.+..++..+...|...|++++ |..+++...+
T Consensus 265 ~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~ 306 (311)
T 3nf1_A 265 GWYKACKVDS-PTVTTTLKNLGALYRRQGKFEA-AETLEEAAMR 306 (311)
T ss_dssp ---------C-HHHHHHHHHHHHHHHHHTCHHH-HHHHHHHHHH
T ss_pred HHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHH-HHHHHHHHHH
Confidence 6666665431 1234567778888888888866 6666665544
No 71
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.39 E-value=6e-11 Score=98.07 Aligned_cols=196 Identities=8% Similarity=0.070 Sum_probs=136.2
Q ss_pred CCcchhHHHHHHhh-------hccch-------hhHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhcCChhHHHHHHhhc
Q 044786 8 ITTDMYTCLIKECT-------FQKDS-------AGAFELLNHIRKRVNIKP-TLLFLNRLLLMHVSCGQLDTARQLFDEM 72 (340)
Q Consensus 8 ~~~~~~~~li~~~~-------~~~~~-------~~a~~~~~~m~~~~g~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~ 72 (340)
-++..|..+...+. +.|++ ++|..+|++..+. +.| +...|..+...+.+.|++++|.++|++.
T Consensus 48 ~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~--~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 125 (308)
T 2ond_A 48 HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST--LLKKNMLLYFAYADYEESRMKYEKVHSIYNRL 125 (308)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT--TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34555666655554 24665 7888888888763 344 4567888888888888888888888877
Q ss_pred Cc--C-Ccc-cHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhh-hccchhhHHHHHHHHHHcC
Q 044786 73 PL--R-DFN-SWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACV-CTMNMELGKQVHGLLFKLG 147 (340)
Q Consensus 73 ~~--~-~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~ 147 (340)
.+ | +.. +|..+...+.+.|++++|.++|++..+.. +++...|........ ..|++++|.++|+...+..
T Consensus 126 l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~------p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~ 199 (308)
T 2ond_A 126 LAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA------RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY 199 (308)
T ss_dssp HTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST------TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 63 3 233 67778888888888888888888887663 233444443333322 2578888888888777664
Q ss_pred CCCchhHHHHHHHHHHhhcCHHHHHHHHHHcccC-------ChhhHHHHHHHHhccCchhHHHHHHHHHhhc
Q 044786 148 SSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH-------NTVVWTAKIVNNCREGHFHQVFNDFKEMGRE 212 (340)
Q Consensus 148 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 212 (340)
.. +...+..++..+.+.|++++|..+|++.... ....|..++..+.+.|+.++|..+++++.+.
T Consensus 200 p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 200 GD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp TT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred CC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33 5667777788888888888888888876541 2346777777777788888888888887764
No 72
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.36 E-value=9.4e-11 Score=88.70 Aligned_cols=160 Identities=12% Similarity=0.076 Sum_probs=123.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHhhcCcC---CcccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHH
Q 044786 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLR---DFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVC 122 (340)
Q Consensus 46 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ 122 (340)
...+..+...+...|++++|.+.|+.+.+. +..++..+...+...|++++|.+.+++..+.. +.+...+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~ 81 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA------PDNVKVATV 81 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CCCHHHHHH
Confidence 345666777778888888888888887643 44567777888888888888888888888773 445667778
Q ss_pred HHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHccc---CChhhHHHHHHHHhccCch
Q 044786 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR---HNTVVWTAKIVNNCREGHF 199 (340)
Q Consensus 123 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~ 199 (340)
+...+...|++++|.+.++.+.+... .+...+..+...+...|++++|...+++..+ .+..++..+...+...|++
T Consensus 82 ~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 160 (186)
T 3as5_A 82 LGLTYVQVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRH 160 (186)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCH
Confidence 88888888888888888888877653 3566777788888888888888888887653 2556788888888888888
Q ss_pred hHHHHHHHHHhhc
Q 044786 200 HQVFNDFKEMGRE 212 (340)
Q Consensus 200 ~~a~~~~~~m~~~ 212 (340)
++|...+++..+.
T Consensus 161 ~~A~~~~~~~~~~ 173 (186)
T 3as5_A 161 EEALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 8888888887664
No 73
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.35 E-value=2.8e-10 Score=97.09 Aligned_cols=250 Identities=10% Similarity=-0.029 Sum_probs=180.3
Q ss_pred HHHHHHHhhcCCCCCH----HHHHHHHHHHHhcCChhHHHHHHhhcCc-----CC----cccHHHHHHHHHcccChhHHH
Q 044786 31 ELLNHIRKRVNIKPTL----LFLNRLLLMHVSCGQLDTARQLFDEMPL-----RD----FNSWAVMIVGYVDVADYQECI 97 (340)
Q Consensus 31 ~~~~~m~~~~g~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~a~ 97 (340)
+.++.+... .-..+. ..+-.....+...|++++|.+.|++..+ ++ ..+|..+...|...|++++|+
T Consensus 85 ~~~~~i~~~-~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~ 163 (383)
T 3ulq_A 85 DLLLEIDKK-QARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSM 163 (383)
T ss_dssp HHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hHHHHHHhc-CCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 777777654 211111 1122245667889999999999998753 22 246888999999999999999
Q ss_pred HHHHHHHHhhcCCcc-ccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCC-C----chhHHHHHHHHHHhhcCHHHH
Q 044786 98 TLFAEMMKRKKGHML-LVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSS-R----NISLTGSLINFYGKFRCLEDA 171 (340)
Q Consensus 98 ~~~~~m~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a 171 (340)
..+++..+....... ......++..+...+...|++++|...++...+.... + ...++..+...|...|++++|
T Consensus 164 ~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A 243 (383)
T 3ulq_A 164 DYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDA 243 (383)
T ss_dssp HHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHH
Confidence 999999876322211 1223568889999999999999999999887754211 1 124788899999999999999
Q ss_pred HHHHHHccc-----C----ChhhHHHHHHHHhccCchhHHHHHHHHHhhccc---CC-ChhhHHHHHHhcccCCchhchH
Q 044786 172 DFVFSQLKR-----H----NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERI---KK-NSYTFSSVLKACGGVDDDGNCG 238 (340)
Q Consensus 172 ~~~~~~~~~-----~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---~p-~~~t~~~ll~~~~~~~~~~~~~ 238 (340)
.+.|++..+ . ...++..+...|...|++++|...+++..+... .| ....+..+-..+...|+. +..
T Consensus 244 ~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~ 322 (383)
T 3ulq_A 244 IPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDE-EAI 322 (383)
T ss_dssp HHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCH-HHH
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcH-HHH
Confidence 999988754 2 244688899999999999999999999865311 12 123356677778888874 224
Q ss_pred HHHHHHHHHhCCCc-cHHHHHHHHHHHhccCCHHHHHHHHHHhhc
Q 044786 239 RQMHANIVKIGLES-DEYVQCGLVDMYGKCRLLRDAERVFELIVD 282 (340)
Q Consensus 239 ~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 282 (340)
........+.+..| ....+..+...|.+.|++++|.+.+++...
T Consensus 323 ~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 323 QGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44555555555444 345777899999999999999999988754
No 74
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.34 E-value=5.2e-11 Score=90.15 Aligned_cols=161 Identities=13% Similarity=0.064 Sum_probs=140.3
Q ss_pred cchhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCc---CCcccHHHHHHH
Q 044786 10 TDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL---RDFNSWAVMIVG 86 (340)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~ 86 (340)
...|..+...+...|++++|.+.++.+... .+.+...+..+...+...|++++|.+.++...+ .+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDA--DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCT--TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 345677888889999999999999998865 345788899999999999999999999998763 355678888999
Q ss_pred HHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhc
Q 044786 87 YVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166 (340)
Q Consensus 87 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 166 (340)
+...|++++|.+.+++..... +.+...+..+...+...|++++|...++...+... .+...+..+...+...|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~ 158 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEAN------PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP-NEGKVHRAIAFSYEQMG 158 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT
T ss_pred HHHhcCHHHHHHHHHHHHhcC------cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcC
Confidence 999999999999999999884 55677889999999999999999999999988763 36788899999999999
Q ss_pred CHHHHHHHHHHcc
Q 044786 167 CLEDADFVFSQLK 179 (340)
Q Consensus 167 ~~~~a~~~~~~~~ 179 (340)
++++|...++...
T Consensus 159 ~~~~A~~~~~~~~ 171 (186)
T 3as5_A 159 RHEEALPHFKKAN 171 (186)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998865
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.33 E-value=1.1e-08 Score=86.84 Aligned_cols=265 Identities=12% Similarity=0.018 Sum_probs=177.3
Q ss_pred HHHHHhhhccchhhHHHHHHHHHhhcCCCCC-H----HHHHHHHHHHHhcCChhHHHHHHhhcCc-----CCc----ccH
Q 044786 15 CLIKECTFQKDSAGAFELLNHIRKRVNIKPT-L----LFLNRLLLMHVSCGQLDTARQLFDEMPL-----RDF----NSW 80 (340)
Q Consensus 15 ~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~-~----~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~----~~~ 80 (340)
.....+...|++++|...++..... . +++ . ..++.+...+...|++++|.+.+++... .+. .++
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~-~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEE-L-PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHT-C-CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHc-C-CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3444566789999999999998876 2 222 2 2566677788889999999999988662 122 135
Q ss_pred HHHHHHHHcccChhHHHHHHHHHHHhhcCCccc-cc-hHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCC----chhH
Q 044786 81 AVMIVGYVDVADYQECITLFAEMMKRKKGHMLL-VF-PAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSR----NISL 154 (340)
Q Consensus 81 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~ 154 (340)
..+...+...|++++|.+.+++........... .| ....+..+...+...|++++|...+++..+..... ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 667778889999999999999988763111000 02 34466778888899999999999999887654321 2346
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHccc----CCh-hhHH-----HHHHHHhccCchhHHHHHHHHHhhcccCCC---hhhH
Q 044786 155 TGSLINFYGKFRCLEDADFVFSQLKR----HNT-VVWT-----AKIVNNCREGHFHQVFNDFKEMGRERIKKN---SYTF 221 (340)
Q Consensus 155 ~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~-~~~~-----~li~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~t~ 221 (340)
+..+...+...|++++|...+++... ++. ..+. ..+..+...|++++|...+++.......+. ...+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 77788889999999999999887642 221 1222 233447789999999999988865432111 1234
Q ss_pred HHHHHhcccCCchhchHHHHHHHHHH----hCCCccH-HHHHHHHHHHhccCCHHHHHHHHHHhhc
Q 044786 222 SSVLKACGGVDDDGNCGRQMHANIVK----IGLESDE-YVQCGLVDMYGKCRLLRDAERVFELIVD 282 (340)
Q Consensus 222 ~~ll~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~li~~~~~~~~~~~A~~~~~~~~~ 282 (340)
..+...+...|++++ +...++.... .|..++. .++..+...+...|+.++|...+++...
T Consensus 257 ~~la~~~~~~g~~~~-A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 257 RNIARAQILLGEFEP-AEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHTTCHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHH-HHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 555666777777766 4444443322 2222222 2555666777778888888887777653
No 76
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.32 E-value=4.3e-11 Score=109.46 Aligned_cols=163 Identities=13% Similarity=-0.022 Sum_probs=134.8
Q ss_pred CCcchhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCc---CCcccHHHHH
Q 044786 8 ITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL---RDFNSWAVMI 84 (340)
Q Consensus 8 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li 84 (340)
-++.+|+.+-..+.+.|++++|++.|++..+. -+-+...++.+..+|.+.|++++|++.|++..+ .+...|..+.
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg 84 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 34678888999999999999999999998876 344578888899999999999999999988762 3556788888
Q ss_pred HHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 044786 85 VGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 164 (340)
Q Consensus 85 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 164 (340)
..+...|++++|++.|++..+.. +-+...|..+..++.+.|++++|.+.|++..+.... +...+..+..+|..
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~------P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~ 157 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQIN------PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQI 157 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHh
Confidence 89999999999999999988874 445678888899999999999999999988887644 56788888888999
Q ss_pred hcCHHHHHHHHHHcc
Q 044786 165 FRCLEDADFVFSQLK 179 (340)
Q Consensus 165 ~~~~~~a~~~~~~~~ 179 (340)
.|++++|.+.+++..
T Consensus 158 ~g~~~~A~~~~~kal 172 (723)
T 4gyw_A 158 VCDWTDYDERMKKLV 172 (723)
T ss_dssp TTCCTTHHHHHHHHH
T ss_pred cccHHHHHHHHHHHH
Confidence 999888888877654
No 77
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.32 E-value=6.6e-10 Score=94.35 Aligned_cols=286 Identities=10% Similarity=0.020 Sum_probs=194.2
Q ss_pred HHHHHHHHhcCChhHHHHHHhhcCc--C--Ccc----cHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHH
Q 044786 50 NRLLLMHVSCGQLDTARQLFDEMPL--R--DFN----SWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIV 121 (340)
Q Consensus 50 ~~li~~~~~~~~~~~a~~~~~~~~~--~--~~~----~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~ 121 (340)
......+...|++++|...+++... + +.. +++.+...+...|++++|.+.+++................++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 3444566788999999999887542 2 211 3566677888999999999999998875311100011234567
Q ss_pred HHHHHhhhccchhhHHHHHHHHHHc----CCC--C-chhHHHHHHHHHHhhcCHHHHHHHHHHcccC--------ChhhH
Q 044786 122 CVLKACVCTMNMELGKQVHGLLFKL----GSS--R-NISLTGSLINFYGKFRCLEDADFVFSQLKRH--------NTVVW 186 (340)
Q Consensus 122 ~ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~ 186 (340)
.+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++..+. ...++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 7888899999999999999887653 222 2 2345677888999999999999999886421 23467
Q ss_pred HHHHHHHhccCchhHHHHHHHHHhhcccCCCh-hhHH-----HHHHhcccCCchhchHHHHHHHHHHhCCCc---cHHHH
Q 044786 187 TAKIVNNCREGHFHQVFNDFKEMGRERIKKNS-YTFS-----SVLKACGGVDDDGNCGRQMHANIVKIGLES---DEYVQ 257 (340)
Q Consensus 187 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~t~~-----~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 257 (340)
..+...+...|++++|...+++.....-.++. ..+. .....+...|+.++ +...++........+ ....+
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAA-AANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHH-HHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHH-HHHHHHhCCCCCCCcchhhHHHH
Confidence 78888899999999999999998754222221 1121 22334668899866 666666554332111 12356
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhhcC----C---cH-HHHHHHHHHHHHcCchHHHHHHHHHHHHc----CCc----cch
Q 044786 258 CGLVDMYGKCRLLRDAERVFELIVDK----K---NI-ASWNAMLVGYIRNGLYVEATKFLYLMKAS----GIQ----IQE 321 (340)
Q Consensus 258 ~~li~~~~~~~~~~~A~~~~~~~~~~----~---~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~----~~~ 321 (340)
..+...+...|++++|...++..... + +. ..+..+..++...|+.++|...+++.... |.. ...
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~~~~g 336 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEG 336 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccHHHHHHHcc
Confidence 67888999999999999999887641 1 22 25666778889999999999999886543 321 112
Q ss_pred hHHHHHHHHhhhcCc
Q 044786 322 SLINDLRIACSSISA 336 (340)
Q Consensus 322 ~t~~~ll~a~~~~g~ 336 (340)
.....++..|.....
T Consensus 337 ~~~~~ll~~~~~~~~ 351 (373)
T 1hz4_A 337 EAMAQQLRQLIQLNT 351 (373)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCC
Confidence 334556666655544
No 78
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.30 E-value=7.6e-11 Score=107.87 Aligned_cols=160 Identities=9% Similarity=-0.032 Sum_probs=142.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHhhcCc---CCcccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHH
Q 044786 45 TLLFLNRLLLMHVSCGQLDTARQLFDEMPL---RDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIV 121 (340)
Q Consensus 45 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~ 121 (340)
+...++.|...+.+.|++++|++.|++..+ .+..+|+.+...|.+.|++++|++.|++.++.. +-+...|.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~------P~~~~a~~ 81 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS------PTFADAYS 81 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHH
Confidence 467899999999999999999999998773 356689999999999999999999999999984 44577999
Q ss_pred HHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHccc--C-ChhhHHHHHHHHhccCc
Q 044786 122 CVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR--H-NTVVWTAKIVNNCREGH 198 (340)
Q Consensus 122 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~ 198 (340)
.+..++.+.|++++|.+.|++..+.... +...|+.+..+|.+.|++++|.+.|++..+ | +...|..+..++...|+
T Consensus 82 nLg~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 82 NMGNTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhccc
Confidence 9999999999999999999999988644 678899999999999999999999999763 3 67789999999999999
Q ss_pred hhHHHHHHHHHhh
Q 044786 199 FHQVFNDFKEMGR 211 (340)
Q Consensus 199 ~~~a~~~~~~m~~ 211 (340)
+++|.+.+++..+
T Consensus 161 ~~~A~~~~~kal~ 173 (723)
T 4gyw_A 161 WTDYDERMKKLVS 173 (723)
T ss_dssp CTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988765
No 79
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.30 E-value=3.4e-09 Score=92.38 Aligned_cols=276 Identities=11% Similarity=-0.016 Sum_probs=182.0
Q ss_pred chhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhH---HHHHHhhcC-cCCcccHHHHHHHHHcccChhHHHHHH
Q 044786 25 DSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDT---ARQLFDEMP-LRDFNSWAVMIVGYVDVADYQECITLF 100 (340)
Q Consensus 25 ~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~---a~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~ 100 (340)
+.++|.+.|+..... |... .+..|...|...+..++ +.+.+.... ..+...+..+...|...+.++++....
T Consensus 89 ~~~~A~~~~~~Aa~~-g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a 164 (452)
T 3e4b_A 89 EHHEAESLLKKAFAN-GEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDV 164 (452)
T ss_dssp HHHHHHHHHHHHHHT-TCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHH
T ss_pred CHHHHHHHHHHHHHC-CCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHH
Confidence 566666666666665 4322 44445555554443322 233333222 224555666666666666555544443
Q ss_pred HHHHHhhcCCccccchHHHHHHHHHHhhhcc---chhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhh----cCHHHHHH
Q 044786 101 AEMMKRKKGHMLLVFPAWIIVCVLKACVCTM---NMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF----RCLEDADF 173 (340)
Q Consensus 101 ~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~ 173 (340)
....+.-. ..+...+..+...+...| +.++|.+.|+...+.|.. +...+..+...|... +++++|..
T Consensus 165 ~~~~~~a~-----~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~ 238 (452)
T 3e4b_A 165 ERICKAAL-----NTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQA 238 (452)
T ss_dssp HHHHHHHT-----TTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred HHHHHHHH-----cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 33333311 122237778888888888 999999999999988844 555556677777655 78999999
Q ss_pred HHHHcccCChhhHHHHHHH-H--hccCchhHHHHHHHHHhhcccCCChhhHHHHHHhccc----CCchhchHHHHHHHHH
Q 044786 174 VFSQLKRHNTVVWTAKIVN-N--CREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG----VDDDGNCGRQMHANIV 246 (340)
Q Consensus 174 ~~~~~~~~~~~~~~~li~~-~--~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~----~~~~~~~~~~~~~~~~ 246 (340)
.|++....+...+..+... + ...+++++|+..|++..+.| +......+-..|.. ..+..+ +..+++...
T Consensus 239 ~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~-A~~~~~~Aa 314 (452)
T 3e4b_A 239 LLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYYEGKWVPADAKA-AEAHFEKAV 314 (452)
T ss_dssp HHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHH-HHHHHHTTT
T ss_pred HHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHH-HHHHHHHHh
Confidence 9999883366777777776 4 56889999999999998876 34444444444442 226645 555555444
Q ss_pred HhCCCccHHHHHHHHHHHhc----cCCHHHHHHHHHHhhcCCcHHHHHHHHHHHHH----cCchHHHHHHHHHHHHcCCc
Q 044786 247 KIGLESDEYVQCGLVDMYGK----CRLLRDAERVFELIVDKKNIASWNAMLVGYIR----NGLYVEATKFLYLMKASGIQ 318 (340)
Q Consensus 247 ~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~ 318 (340)
+-++..+..|-..|.. ..++++|.+.|++.....+......|...|.. .+++++|..+|+.-.+.|..
T Consensus 315 ----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~ 390 (452)
T 3e4b_A 315 ----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP 390 (452)
T ss_dssp ----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH
T ss_pred ----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH
Confidence 4466677777777766 44899999999999877777777778777764 46899999999998888754
No 80
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.25 E-value=4.5e-10 Score=91.06 Aligned_cols=133 Identities=8% Similarity=0.034 Sum_probs=80.8
Q ss_pred cHHHHHHHHHcccChhHHHHHHHHHHHhhcCC--ccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHc------CC-C
Q 044786 79 SWAVMIVGYVDVADYQECITLFAEMMKRKKGH--MLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKL------GS-S 149 (340)
Q Consensus 79 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~--~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~ 149 (340)
++..+...+...|++++|+..+++........ ...+....++..+...+...|++++|.+.++...+. .. .
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 124 (283)
T 3edt_B 45 MLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHP 124 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCCh
Confidence 34555555555566666665555555431000 000233446666666666667777776666665544 11 1
Q ss_pred CchhHHHHHHHHHHhhcCHHHHHHHHHHcccC-----------ChhhHHHHHHHHhccCchhHHHHHHHHHhh
Q 044786 150 RNISLTGSLINFYGKFRCLEDADFVFSQLKRH-----------NTVVWTAKIVNNCREGHFHQVFNDFKEMGR 211 (340)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 211 (340)
....++..+...|...|++++|...|++..+. ...++..+...|...|++++|...+++..+
T Consensus 125 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 125 DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 23456667777777778877777777765422 234677778888888888888888888765
No 81
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.23 E-value=1.6e-10 Score=93.67 Aligned_cols=224 Identities=12% Similarity=0.050 Sum_probs=150.7
Q ss_pred hhccchhhHHHHHHHHHhhc------CCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCc-------C----CcccHHHH
Q 044786 21 TFQKDSAGAFELLNHIRKRV------NIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL-------R----DFNSWAVM 83 (340)
Q Consensus 21 ~~~~~~~~a~~~~~~m~~~~------g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-------~----~~~~~~~l 83 (340)
...|+++.|.+.+++..+.. ..+....++..+...+...|++++|.+.|++... + ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 45677788887777776631 1223467888999999999999999999988762 1 23368889
Q ss_pred HHHHHcccChhHHHHHHHHHHHhhcCC--ccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHc------CCCC-chhH
Q 044786 84 IVGYVDVADYQECITLFAEMMKRKKGH--MLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKL------GSSR-NISL 154 (340)
Q Consensus 84 i~~~~~~g~~~~a~~~~~~m~~~~~~~--~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~ 154 (340)
...+...|++++|.+.+++........ +..+....++..+...+...|++++|...+++..+. +-.| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 999999999999999999988762000 000344668889999999999999999999988776 2122 3567
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHcccC------------ChhhHHHHHHHHhccCchhHHH------HHHHHHhhcccCC
Q 044786 155 TGSLINFYGKFRCLEDADFVFSQLKRH------------NTVVWTAKIVNNCREGHFHQVF------NDFKEMGRERIKK 216 (340)
Q Consensus 155 ~~~l~~~~~~~~~~~~a~~~~~~~~~~------------~~~~~~~li~~~~~~~~~~~a~------~~~~~m~~~~~~p 216 (340)
+..+...|...|++++|...+++..+. ....|..+...+...+....+. ..++.... ..|
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 249 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV--DSP 249 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC--CCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC--CCH
Confidence 888999999999999999999887531 1223333333333333322222 22222111 112
Q ss_pred -ChhhHHHHHHhcccCCchhchHHHHHHHHHH
Q 044786 217 -NSYTFSSVLKACGGVDDDGNCGRQMHANIVK 247 (340)
Q Consensus 217 -~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~ 247 (340)
...++..+...+...|++++ |..+++...+
T Consensus 250 ~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~ 280 (283)
T 3edt_B 250 TVNTTLRSLGALYRRQGKLEA-AHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHH-HHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHH
Confidence 24467778888888888866 6666665543
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.23 E-value=1.5e-09 Score=85.44 Aligned_cols=194 Identities=14% Similarity=0.015 Sum_probs=135.2
Q ss_pred CCcchhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCcC---CcccHHHHH
Q 044786 8 ITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLR---DFNSWAVMI 84 (340)
Q Consensus 8 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li 84 (340)
.++..+......+...|++++|.+.|+..... .-+++...+..+..++.+.|++++|++.|++..+. +..+|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKL-TNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-cCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 35677888888888899999999999998887 32267777777888888899999999998887643 344677888
Q ss_pred HHHHcccChhHHHHHHHHHHHhhcCCccccchH-------HHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCc---hhH
Q 044786 85 VGYVDVADYQECITLFAEMMKRKKGHMLLVFPA-------WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRN---ISL 154 (340)
Q Consensus 85 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~ 154 (340)
..+...|++++|++.+++..+.. +.+. ..|..+...+...|++++|.+.++...+.. |+ ...
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~ 155 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV------PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT--SKKWKTDA 155 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS------TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS--CHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC------CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC--CCcccHHH
Confidence 88888999999999999888873 2233 457777777888888888888888887663 33 456
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHcc---cCChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCChh
Q 044786 155 TGSLINFYGKFRCLEDADFVFSQLK---RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSY 219 (340)
Q Consensus 155 ~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 219 (340)
+..+...|...|+. .++++. ..+...|.... ....+.+++|+..+++..+. .|+..
T Consensus 156 ~~~l~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l--~p~~~ 214 (228)
T 4i17_A 156 LYSLGVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTL--SPNRT 214 (228)
T ss_dssp HHHHHHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHHHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc--CCCCH
Confidence 66666666655543 222222 12333333322 23345678888888887764 45543
No 83
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.20 E-value=2.4e-09 Score=87.75 Aligned_cols=168 Identities=11% Similarity=0.010 Sum_probs=107.3
Q ss_pred hhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhc--C-ChhHHHHHHhhcCcCCcccHHHHHHHHHcccChhHHHHHHHHH
Q 044786 27 AGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSC--G-QLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEM 103 (340)
Q Consensus 27 ~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~--~-~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 103 (340)
.+|.+++.+..+. .+++...| .++ +. + ++++|.+.|++. ...|...|++++|...|.+.
T Consensus 2 ~~a~~~~~~a~k~--~~~~~~~~-~~~----~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~a 63 (292)
T 1qqe_A 2 SDPVELLKRAEKK--GVPSSGFM-KLF----SGSDSYKFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKA 63 (292)
T ss_dssp CCHHHHHHHHHHH--SSCCCTHH-HHH----SCCSHHHHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHH
T ss_pred CcHHHHHHHHHHH--hCcCCCcc-hhc----CCCCCccHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHH
Confidence 3577777777776 44432222 222 32 2 488888887665 55677889999999999888
Q ss_pred HHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCC---C--chhHHHHHHHHHHhh-cCHHHHHHHHHH
Q 044786 104 MKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSS---R--NISLTGSLINFYGKF-RCLEDADFVFSQ 177 (340)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~--~~~~~~~l~~~~~~~-~~~~~a~~~~~~ 177 (340)
.+.............+|+.+...+...|++++|...++...+.... + ...+++.+...|... |++++|...|++
T Consensus 64 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~ 143 (292)
T 1qqe_A 64 ADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYEL 143 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 7652111000112568888888888889999998888877654211 1 134566667777775 777777777766
Q ss_pred cccC-----C----hhhHHHHHHHHhccCchhHHHHHHHHHhhc
Q 044786 178 LKRH-----N----TVVWTAKIVNNCREGHFHQVFNDFKEMGRE 212 (340)
Q Consensus 178 ~~~~-----~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 212 (340)
..+- + ..+++.+...+.+.|++++|+..|++..+.
T Consensus 144 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 187 (292)
T 1qqe_A 144 AGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKS 187 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 5421 1 234666667777777777777777776653
No 84
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.19 E-value=1.8e-09 Score=88.43 Aligned_cols=199 Identities=8% Similarity=-0.109 Sum_probs=113.8
Q ss_pred hhHHHHHHhhhccchhhHHHHHHHHHhhc---CCCCC-HHHHHHHHHHHHhcCChhHHHHHHhhcCc-----CC----cc
Q 044786 12 MYTCLIKECTFQKDSAGAFELLNHIRKRV---NIKPT-LLFLNRLLLMHVSCGQLDTARQLFDEMPL-----RD----FN 78 (340)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~---g~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~----~~ 78 (340)
.|......+...|++++|.+.|+...... |-+++ ..+|+.+..+|.+.|++++|+..|++..+ .+ ..
T Consensus 39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 118 (292)
T 1qqe_A 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118 (292)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 45566666666777777777777665431 11111 45667777777777777777777766542 11 23
Q ss_pred cHHHHHHHHHcc-cChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchh----
Q 044786 79 SWAVMIVGYVDV-ADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNIS---- 153 (340)
Q Consensus 79 ~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---- 153 (340)
+++.+...|... |++++|+..|++..+...+.........++..+...+.+.|++++|...|+...+........
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 198 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHH
Confidence 566666677774 777777777777766521000000013456667777777777777777777776654332211
Q ss_pred --HHHHHHHHHHhhcCHHHHHHHHHHcccCCh--------hhHHHHHHHHh--ccCchhHHHHHHHHHh
Q 044786 154 --LTGSLINFYGKFRCLEDADFVFSQLKRHNT--------VVWTAKIVNNC--REGHFHQVFNDFKEMG 210 (340)
Q Consensus 154 --~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~li~~~~--~~~~~~~a~~~~~~m~ 210 (340)
.|..+..++...|++++|...|++..+-+. ..+..++.++. ..+++++|+..|+++.
T Consensus 199 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 199 KDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 455566667777777777777777653211 12333444443 2345666666665543
No 85
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.18 E-value=3.7e-09 Score=89.97 Aligned_cols=234 Identities=10% Similarity=-0.005 Sum_probs=149.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHhhcCc-----CC----cccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCcc-ccchH
Q 044786 48 FLNRLLLMHVSCGQLDTARQLFDEMPL-----RD----FNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHML-LVFPA 117 (340)
Q Consensus 48 ~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~ 117 (340)
.+-.....+...|++++|.+.|++..+ ++ ..++..+...|...|+++.|...+++..+....... .....
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 333444556667777777777766542 11 224666677777777777777777776654322211 12357
Q ss_pred HHHHHHHHHhhhccchhhHHHHHHHHHHc----CCC-CchhHHHHHHHHHHhhcCHHHHHHHHHHccc-----C---Chh
Q 044786 118 WIIVCVLKACVCTMNMELGKQVHGLLFKL----GSS-RNISLTGSLINFYGKFRCLEDADFVFSQLKR-----H---NTV 184 (340)
Q Consensus 118 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~---~~~ 184 (340)
.+++.+...+...|++++|.+.++...+. +.. ....++..+...|...|++++|.+.|++..+ . ...
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 262 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPK 262 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHH
Confidence 77777777777777777777777766543 111 1234667777788888888888887777653 2 244
Q ss_pred hHHHHHHHHhccCchhHHHHHHHHHhhccc---CCC-hhhHHHHHHhcccCCchhchHHHHHHHHHHhCCCc-cHHHHHH
Q 044786 185 VWTAKIVNNCREGHFHQVFNDFKEMGRERI---KKN-SYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLES-DEYVQCG 259 (340)
Q Consensus 185 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---~p~-~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 259 (340)
++..+...|.+.|++++|...+++..+..- .|. ...+..+-..+...++. +........+.+.+..| ....+..
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~-~~~~~al~~~~~~~~~~~~~~~~~~ 341 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDE-RKIHDLLSYFEKKNLHAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCH-HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHhCCChhHHHHHHHH
Confidence 577777888888888888888888765321 121 23455555566666663 22444444444444444 3456678
Q ss_pred HHHHHhccCCHHHHHHHHHHhhc
Q 044786 260 LVDMYGKCRLLRDAERVFELIVD 282 (340)
Q Consensus 260 li~~~~~~~~~~~A~~~~~~~~~ 282 (340)
+...|.+.|++++|.+.|++...
T Consensus 342 la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 88999999999999999988754
No 86
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.16 E-value=1.3e-09 Score=85.68 Aligned_cols=149 Identities=13% Similarity=-0.091 Sum_probs=122.2
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHhhcCc----CCcccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHH
Q 044786 44 PTLLFLNRLLLMHVSCGQLDTARQLFDEMPL----RDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI 119 (340)
Q Consensus 44 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ 119 (340)
.|+..+......+.+.|++++|.+.|+...+ ++...+..+..++...|++++|++.|++..+.. +.+...
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~------p~~~~~ 78 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN------YNLANA 78 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT------CSHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC------cchHHH
Confidence 3567888888889999999999999998763 556667778888999999999999999999874 567889
Q ss_pred HHHHHHHhhhccchhhHHHHHHHHHHcCCCCch-------hHHHHHHHHHHhhcCHHHHHHHHHHcccCC-----hhhHH
Q 044786 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNI-------SLTGSLINFYGKFRCLEDADFVFSQLKRHN-----TVVWT 187 (340)
Q Consensus 120 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~ 187 (340)
+..+...+...|++++|.+.++...+.... +. ..|..+...+...|++++|.+.|++..+.+ ...|.
T Consensus 79 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 157 (228)
T 4i17_A 79 YIGKSAAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALY 157 (228)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHH
Confidence 999999999999999999999999887754 33 568888889999999999999999886542 34577
Q ss_pred HHHHHHhccCch
Q 044786 188 AKIVNNCREGHF 199 (340)
Q Consensus 188 ~li~~~~~~~~~ 199 (340)
.+..+|...|+.
T Consensus 158 ~l~~~~~~~~~~ 169 (228)
T 4i17_A 158 SLGVLFYNNGAD 169 (228)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777776665
No 87
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.15 E-value=2.1e-09 Score=76.53 Aligned_cols=127 Identities=15% Similarity=0.082 Sum_probs=77.4
Q ss_pred hhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCc---CCcccHHHHHHHHH
Q 044786 12 MYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL---RDFNSWAVMIVGYV 88 (340)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~ 88 (340)
.|..+...+...|++++|.++++.+.+. . +.+...+..+...+...|++++|...|+++.. .+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALEL-D-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHc-C-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 4556666667777777777777777665 2 33555666666666666677777666666542 23345555666666
Q ss_pred cccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHc
Q 044786 89 DVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKL 146 (340)
Q Consensus 89 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 146 (340)
..|++++|.+.++++.... +.+..++..+...+.+.|++++|...++.+.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 6666666666666666552 233445555666666666666666666655544
No 88
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.12 E-value=5.2e-09 Score=74.39 Aligned_cols=127 Identities=13% Similarity=0.111 Sum_probs=89.6
Q ss_pred cHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHH
Q 044786 79 SWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158 (340)
Q Consensus 79 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 158 (340)
.|..+...+...|++++|.++++++.+.. +.+...+..+...+...|++++|...++.+.+.+.. +...+..+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l 75 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNL 75 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC------CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHH
Confidence 35566677777777777777777777663 345566667777777777777777777777766532 45566677
Q ss_pred HHHHHhhcCHHHHHHHHHHccc---CChhhHHHHHHHHhccCchhHHHHHHHHHhhc
Q 044786 159 INFYGKFRCLEDADFVFSQLKR---HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRE 212 (340)
Q Consensus 159 ~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 212 (340)
...+...|++++|.+.++++.+ .+..++..+...+...|++++|...++++...
T Consensus 76 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 76 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 7777777788887777777643 24556777777788888888888888777653
No 89
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.07 E-value=3.5e-09 Score=97.09 Aligned_cols=168 Identities=11% Similarity=0.007 Sum_probs=120.9
Q ss_pred hhccchhhHHHHHHHHH--------hhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCc---CCcccHHHHHHHHHc
Q 044786 21 TFQKDSAGAFELLNHIR--------KRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL---RDFNSWAVMIVGYVD 89 (340)
Q Consensus 21 ~~~~~~~~a~~~~~~m~--------~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~ 89 (340)
...|++++|++.++... .. .+.+...+..+...+.+.|++++|.+.|++..+ .+...|..+...+..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD--FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C--CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc--cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHH
Confidence 56778888888888877 32 344566777777888888888888888887763 345567777788888
Q ss_pred ccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHH
Q 044786 90 VADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE 169 (340)
Q Consensus 90 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 169 (340)
.|++++|++.|++..+.. +-+...+..+..++.+.|++++ .+.|++..+.... +...|..+..+|.+.|+++
T Consensus 480 ~g~~~~A~~~~~~al~l~------P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~ 551 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF------PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRV 551 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS------TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred cCCHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHH
Confidence 888888888888888773 3456677778888888888888 8888888777644 5667777888888888888
Q ss_pred HHHHHHHHcccC---ChhhHHHHHHHHhccCc
Q 044786 170 DADFVFSQLKRH---NTVVWTAKIVNNCREGH 198 (340)
Q Consensus 170 ~a~~~~~~~~~~---~~~~~~~li~~~~~~~~ 198 (340)
+|.+.|++..+. +...|..+..++...++
T Consensus 552 ~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 552 GAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 888888887643 34456666666655444
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.07 E-value=1.4e-08 Score=82.25 Aligned_cols=138 Identities=14% Similarity=0.012 Sum_probs=61.7
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCcC-----CcccHHHHHHHHHcccChhHHHHHHHHH
Q 044786 29 AFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLR-----DFNSWAVMIVGYVDVADYQECITLFAEM 103 (340)
Q Consensus 29 a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m 103 (340)
|+..|+..... + .++..++..+..++...|++++|++++.+.... +...+..++..+.+.|+.+.|.+.+++|
T Consensus 85 a~~~l~~l~~~-~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 NIEELENLLKD-K-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp CCHHHHHTTTT-S-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-C-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34444444333 2 333344444445555555555555555554322 2223444555555555555555555555
Q ss_pred HHhhcCCccccc-----hHHHHHHHHHHhhh--cc--chhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHH
Q 044786 104 MKRKKGHMLLVF-----PAWIIVCVLKACVC--TM--NMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFV 174 (340)
Q Consensus 104 ~~~~~~~~~~~~-----~~~~~~~ll~~~~~--~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 174 (340)
.+. .| +..+...+..++.. .| ++.+|..+|+++.+.. |+..+...++.++.+.|++++|++.
T Consensus 163 ~~~-------~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~ 233 (310)
T 3mv2_B 163 TNA-------IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGI 233 (310)
T ss_dssp HHH-------SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred Hhc-------CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHH
Confidence 444 34 23333334433221 12 4555555555544332 2212222233345555555555555
Q ss_pred HHH
Q 044786 175 FSQ 177 (340)
Q Consensus 175 ~~~ 177 (340)
++.
T Consensus 234 L~~ 236 (310)
T 3mv2_B 234 VEL 236 (310)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 91
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.06 E-value=1.1e-06 Score=79.68 Aligned_cols=211 Identities=10% Similarity=-0.034 Sum_probs=154.4
Q ss_pred HHHHHHHHHhhhccchhhHH-HHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHccc-------------CC-
Q 044786 118 WIIVCVLKACVCTMNMELGK-QVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR-------------HN- 182 (340)
Q Consensus 118 ~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------------~~- 182 (340)
..|......+...|+.++|. ++|+...... +.+...+-..+....+.|++++|.++|+.+.+ |+
T Consensus 344 ~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~ 422 (679)
T 4e6h_A 344 EIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTN 422 (679)
T ss_dssp HHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcc
Confidence 34444444455667888896 9999888754 34666677788888899999999999998764 21
Q ss_pred -----------hhhHHHHHHHHhccCchhHHHHHHHHHhhc-c-cCCChhhHHHHHHhcccCCchhchHHHHHHHHHHhC
Q 044786 183 -----------TVVWTAKIVNNCREGHFHQVFNDFKEMGRE-R-IKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIG 249 (340)
Q Consensus 183 -----------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~-~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 249 (340)
...|...+....+.|..+.|..+|.+..+. + ..+......+.+.-.. .++.+. |..+++...+.
T Consensus 423 ~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~-~~d~e~-Ar~ife~~Lk~- 499 (679)
T 4e6h_A 423 ESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHI-SKDTKT-ACKVLELGLKY- 499 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTT-TSCCHH-HHHHHHHHHHH-
T ss_pred hhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh-CCCHHH-HHHHHHHHHHH-
Confidence 235777888888889999999999999875 2 1222233333333222 344545 88888887776
Q ss_pred CCccHHHHHHHHHHHhccCCHHHHHHHHHHhhcC-C----cHHHHHHHHHHHHHcCchHHHHHHHHHHHHcCCccchhHH
Q 044786 250 LESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK-K----NIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLI 324 (340)
Q Consensus 250 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~ 324 (340)
++-++..|...++.....|+.+.|..+|++.... | ....|...+.--.+.|+.+.+.++.+++.+. .|+....
T Consensus 500 ~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~ 577 (679)
T 4e6h_A 500 FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKL 577 (679)
T ss_dssp HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHH
T ss_pred CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHH
Confidence 4557777888899888999999999999998763 3 4568888988889999999999999999877 4666666
Q ss_pred HHHHHHhhhc
Q 044786 325 NDLRIACSSI 334 (340)
Q Consensus 325 ~~ll~a~~~~ 334 (340)
..+.+-|.-.
T Consensus 578 ~~f~~ry~~~ 587 (679)
T 4e6h_A 578 EEFTNKYKVL 587 (679)
T ss_dssp HHHHHHTCBT
T ss_pred HHHHHHhcCC
Confidence 6666655433
No 92
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.04 E-value=5.6e-09 Score=83.92 Aligned_cols=96 Identities=13% Similarity=-0.022 Sum_probs=69.0
Q ss_pred CcchhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCC---HHHHHHHHHHHHhcCChhHHHHHHhhcCc--C-C---ccc
Q 044786 9 TTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPT---LLFLNRLLLMHVSCGQLDTARQLFDEMPL--R-D---FNS 79 (340)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~---~~~ 79 (340)
++..+-.....+.+.|++++|.+.|+.+... .+.+ ...+..+..++.+.|++++|...|+...+ | + ...
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTY--GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG--CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 3455556667777888888888888888776 2223 56777777888888888888888887763 2 1 124
Q ss_pred HHHHHHHHHc--------ccChhHHHHHHHHHHHh
Q 044786 80 WAVMIVGYVD--------VADYQECITLFAEMMKR 106 (340)
Q Consensus 80 ~~~li~~~~~--------~g~~~~a~~~~~~m~~~ 106 (340)
+..+..++.. .|++++|+..|++..+.
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 5566667777 88888888888888877
No 93
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.04 E-value=2.6e-08 Score=80.00 Aligned_cols=165 Identities=7% Similarity=0.006 Sum_probs=117.8
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHhhcCc--C-C---cccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchH
Q 044786 44 PTLLFLNRLLLMHVSCGQLDTARQLFDEMPL--R-D---FNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPA 117 (340)
Q Consensus 44 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 117 (340)
.+...+-.+...+.+.|++++|.+.|+.+.. | + ...+..+..++.+.|++++|+..|++..+..... +...
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~ 89 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQID---PRVP 89 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---TTHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCC---chhH
Confidence 3566777788888999999999999999874 3 2 3457778889999999999999999999883111 2335
Q ss_pred HHHHHHHHHhhh--------ccchhhHHHHHHHHHHcCCCCchhHH-----------------HHHHHHHHhhcCHHHHH
Q 044786 118 WIIVCVLKACVC--------TMNMELGKQVHGLLFKLGSSRNISLT-----------------GSLINFYGKFRCLEDAD 172 (340)
Q Consensus 118 ~~~~~ll~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~-----------------~~l~~~~~~~~~~~~a~ 172 (340)
..+..+..++.. .|++++|...|+.+.+..+. +.... ..+...|.+.|++++|.
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 168 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAA 168 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 577788888888 99999999999999887543 22222 34456666677777777
Q ss_pred HHHHHccc--CC----hhhHHHHHHHHhcc----------CchhHHHHHHHHHhhc
Q 044786 173 FVFSQLKR--HN----TVVWTAKIVNNCRE----------GHFHQVFNDFKEMGRE 212 (340)
Q Consensus 173 ~~~~~~~~--~~----~~~~~~li~~~~~~----------~~~~~a~~~~~~m~~~ 212 (340)
..|+.+.+ |+ ...+..+..+|... |++++|...|++..+.
T Consensus 169 ~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 169 VTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 77766643 21 22455555566544 6667777777766653
No 94
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.04 E-value=1.7e-08 Score=82.30 Aligned_cols=171 Identities=5% Similarity=-0.106 Sum_probs=119.6
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcC--cC-CcccHHHHHHHHHcccChhHHHHHHHHHHHhh
Q 044786 31 ELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMP--LR-DFNSWAVMIVGYVDVADYQECITLFAEMMKRK 107 (340)
Q Consensus 31 ~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 107 (340)
.+.+.+... ++.+...+..+...+.+.|++++|.+.|++.. .| +...+..+...+...|++++|...+++....
T Consensus 104 ~l~~~l~~~--lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~- 180 (287)
T 3qou_A 104 AIRALLDXV--LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ- 180 (287)
T ss_dssp HHHHHHHHH--SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG-
T ss_pred HHHHHHHHH--cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh-
Confidence 333444433 34455666677777788888888888888776 23 4456777788888888888888888887665
Q ss_pred cCCccccchHHH-HHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHccc--C---
Q 044786 108 KGHMLLVFPAWI-IVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR--H--- 181 (340)
Q Consensus 108 ~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~--- 181 (340)
.|+... .......+.+.++.+.|.+.++......+. +...+..+...|...|++++|...|.++.+ |
T Consensus 181 ------~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~ 253 (287)
T 3qou_A 181 ------DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAA 253 (287)
T ss_dssp ------GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGG
T ss_pred ------hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccc
Confidence 344332 222333355667777788888877777643 667777888888888888888888888764 2
Q ss_pred ChhhHHHHHHHHhccCchhHHHHHHHHHhh
Q 044786 182 NTVVWTAKIVNNCREGHFHQVFNDFKEMGR 211 (340)
Q Consensus 182 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 211 (340)
+...+..+...+...|+.++|...|++-..
T Consensus 254 ~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 254 DGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp GGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 255688888888888888888888877543
No 95
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.03 E-value=9.5e-09 Score=77.30 Aligned_cols=158 Identities=9% Similarity=0.017 Sum_probs=90.7
Q ss_pred hhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCcCCcc-cHHHHHH-H-HH
Q 044786 12 MYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFN-SWAVMIV-G-YV 88 (340)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~li~-~-~~ 88 (340)
.+......+.+.|++++|...|+...+. -+.+...+..+...+.+.|++++|...|+.....++. .+..+.. . +.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDE--LQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELH 85 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHH--HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHH
Confidence 3445556666777777777777776654 2335666777777777777777777777776632211 1111111 1 11
Q ss_pred cccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCC-chhHHHHHHHHHHhhcC
Q 044786 89 DVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSR-NISLTGSLINFYGKFRC 167 (340)
Q Consensus 89 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 167 (340)
..+...+|+..+++..+.. +-+...+..+...+...|++++|...++.+.+....+ +...+..+...+...|+
T Consensus 86 ~~~~~~~a~~~~~~al~~~------P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 159 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN------PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQ 159 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCS
T ss_pred hhcccchHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCC
Confidence 2223334566666666652 2345566666666666666666666666666554432 23455556666666666
Q ss_pred HHHHHHHHHH
Q 044786 168 LEDADFVFSQ 177 (340)
Q Consensus 168 ~~~a~~~~~~ 177 (340)
.++|...|++
T Consensus 160 ~~~A~~~y~~ 169 (176)
T 2r5s_A 160 GNAIASKYRR 169 (176)
T ss_dssp SCHHHHHHHH
T ss_pred CCcHHHHHHH
Confidence 6666655554
No 96
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.03 E-value=8.8e-08 Score=77.59 Aligned_cols=172 Identities=9% Similarity=-0.013 Sum_probs=96.1
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHcccC-----ChhhHHHHHHHHhccCchhHHHHHHHHHh
Q 044786 136 GKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH-----NTVVWTAKIVNNCREGHFHQVFNDFKEMG 210 (340)
Q Consensus 136 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 210 (340)
+...+++..+.+ .++..++..+..++...|++++|.+++.+.... +...+-..+..+.+.|+++.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 445555555444 334444456666677777777777777665322 34456666677777777777777777776
Q ss_pred hcccCC-----ChhhHHHHHHhcc----cCCchhchHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhh
Q 044786 211 RERIKK-----NSYTFSSVLKACG----GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIV 281 (340)
Q Consensus 211 ~~~~~p-----~~~t~~~ll~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 281 (340)
+. .| +..+...+..++. ..++..+ +..+++.+... .|+..+-..++.++.+.|++++|++.++.+.
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~-A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATS-NFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTH-HHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHH-HHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 53 45 2444444444421 1224434 56666665443 2332222233336777777777777776554
Q ss_pred c------------CCcHHHHHHHHHHHHHcCchHHHHHHHHHHHHc
Q 044786 282 D------------KKNIASWNAMLVGYIRNGLYVEATKFLYLMKAS 315 (340)
Q Consensus 282 ~------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 315 (340)
. +.|+.+.-.+|......|+ +|.++++++...
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 3 2255555444544445565 667777777655
No 97
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.02 E-value=1.6e-08 Score=78.30 Aligned_cols=182 Identities=7% Similarity=0.031 Sum_probs=115.4
Q ss_pred hhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCChhHHHHHHhhcCcCCcccHHHHHHHHHcc
Q 044786 12 MYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTL-LFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDV 90 (340)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~ 90 (340)
.+-.....+.+.|++++|.+.|+...+. .|+. ..|.. ........ ......+.+...+.+.
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~-----~~~~~~~~----------~~~~~~~~lg~~~~~~ 67 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIAL---NIDRTEMYYW-----TNVDKNSE----------ISSKLATELALAYKKN 67 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CHHHHHHHHH-----HHSCTTSH----------HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCChHHHHH-----hhhcchhh----------hhHHHHHHHHHHHHHC
Confidence 3334445566778888888888877765 3332 22211 00000000 0111233477778888
Q ss_pred cChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcC--H
Q 044786 91 ADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC--L 168 (340)
Q Consensus 91 g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~ 168 (340)
|++++|+..|++..+.. +-+...+..+...+...|++++|...|+...+..+. +...+..+...|...|+ .
T Consensus 68 g~~~~A~~~~~~al~~~------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~ 140 (208)
T 3urz_A 68 RNYDKAYLFYKELLQKA------PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEK 140 (208)
T ss_dssp TCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHH
Confidence 88888888888888874 445677888888888888888888888888887644 56677777777766554 4
Q ss_pred HHHHHHHHHcccCChh--hHHHHHHHHhccCchhHHHHHHHHHhhcccCCChhh
Q 044786 169 EDADFVFSQLKRHNTV--VWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYT 220 (340)
Q Consensus 169 ~~a~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t 220 (340)
..+...++....++.. .+.....++...|++++|...|++..+ +.|+...
T Consensus 141 ~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~ 192 (208)
T 3urz_A 141 KKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEA 192 (208)
T ss_dssp HHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHH
T ss_pred HHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHH
Confidence 4566667666665443 233445566668889999999998887 3576543
No 98
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.99 E-value=2.5e-08 Score=77.21 Aligned_cols=129 Identities=8% Similarity=-0.080 Sum_probs=93.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHhhcCc---CCcccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHH
Q 044786 45 TLLFLNRLLLMHVSCGQLDTARQLFDEMPL---RDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIV 121 (340)
Q Consensus 45 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~ 121 (340)
.....+.+..++.+.|++++|...|++..+ .+...|..+...+...|++++|+..|++..+.. +-+..++.
T Consensus 53 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------P~~~~a~~ 126 (208)
T 3urz_A 53 SSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE------ADNLAANI 126 (208)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------TTCHHHHH
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------CCCHHHHH
Confidence 344555688889999999999999998773 356678889999999999999999999999884 44567888
Q ss_pred HHHHHhhhccc--hhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHcccC
Q 044786 122 CVLKACVCTMN--MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH 181 (340)
Q Consensus 122 ~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 181 (340)
.+...+...|. .+.+...++... ...|....+.....++...|++++|...|++..+.
T Consensus 127 ~lg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 127 FLGNYYYLTAEQEKKKLETDYKKLS--SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 88888766654 344455555443 22333334444566677789999999999998754
No 99
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.99 E-value=1.6e-08 Score=83.34 Aligned_cols=167 Identities=10% Similarity=-0.004 Sum_probs=107.2
Q ss_pred hccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCcCCcccHHHHHHHHHcccChhHHHHHHH
Q 044786 22 FQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFA 101 (340)
Q Consensus 22 ~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 101 (340)
..|++++|.+++++..+. .+.+ .+...+++++|...|+.. ...|...|++++|...|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~--~~~~---------~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~ 60 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKY--LKTS---------FMKWKPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYL 60 (307)
T ss_dssp CHHHHHHHHHHHHHHHHH--HCCC---------SSSCSCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHH--cccc---------ccCCCCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHH
Confidence 467889999999988875 2211 011147777777776553 556777888888888888
Q ss_pred HHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCC---CC--chhHHHHHHHHHHhhcCHHHHHHHHH
Q 044786 102 EMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGS---SR--NISLTGSLINFYGKFRCLEDADFVFS 176 (340)
Q Consensus 102 ~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~ 176 (340)
+..+..........-..+|..+...+...|++++|...++...+.-. .+ ...++..+...|.. |++++|...|+
T Consensus 61 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~ 139 (307)
T 2ifu_A 61 QEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQ 139 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 77765311100011244777777888888888888888877654311 11 13456666777777 77777777777
Q ss_pred HcccC---------ChhhHHHHHHHHhccCchhHHHHHHHHHhh
Q 044786 177 QLKRH---------NTVVWTAKIVNNCREGHFHQVFNDFKEMGR 211 (340)
Q Consensus 177 ~~~~~---------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 211 (340)
+..+- ...+++.+...|...|++++|+..|++..+
T Consensus 140 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 183 (307)
T 2ifu_A 140 QAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKS 183 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 65421 134566677777777777777777777654
No 100
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.95 E-value=2.8e-08 Score=74.69 Aligned_cols=155 Identities=10% Similarity=-0.032 Sum_probs=114.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHhhcCc---CCcccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHH
Q 044786 49 LNRLLLMHVSCGQLDTARQLFDEMPL---RDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLK 125 (340)
Q Consensus 49 ~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~ 125 (340)
+..+...+.+.|++++|...|++..+ .+...+..+...+...|++++|+..+++.... .|+...+.....
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~-------~p~~~~~~~~~~ 81 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE-------YQDNSYKSLIAK 81 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG-------GCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc-------cCChHHHHHHHH
Confidence 44556677889999999999999873 35567888889999999999999999988766 343333222211
Q ss_pred H-hhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHcccCC-----hhhHHHHHHHHhccCch
Q 044786 126 A-CVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN-----TVVWTAKIVNNCREGHF 199 (340)
Q Consensus 126 ~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~li~~~~~~~~~ 199 (340)
. +...+....+...++...+..+. +...+..+...+...|++++|...|+++.+.+ ...+..+...+...|+.
T Consensus 82 ~~~~~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 160 (176)
T 2r5s_A 82 LELHQQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQG 160 (176)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSS
T ss_pred HHHHhhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCC
Confidence 1 12223344567888888776543 57788888889999999999999998876432 44788888889999999
Q ss_pred hHHHHHHHHHhh
Q 044786 200 HQVFNDFKEMGR 211 (340)
Q Consensus 200 ~~a~~~~~~m~~ 211 (340)
++|...|++...
T Consensus 161 ~~A~~~y~~al~ 172 (176)
T 2r5s_A 161 NAIASKYRRQLY 172 (176)
T ss_dssp CHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 999988887653
No 101
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.94 E-value=3.3e-08 Score=80.68 Aligned_cols=166 Identities=9% Similarity=-0.011 Sum_probs=103.2
Q ss_pred hHHHHHHhhcCcCCcccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHH
Q 044786 63 DTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGL 142 (340)
Q Consensus 63 ~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 142 (340)
+...+.+......+...+..+...+...|++++|...|++..... +-+...+..+...+.+.|++++|...++.
T Consensus 103 ~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~------P~~~~a~~~la~~~~~~g~~~~A~~~l~~ 176 (287)
T 3qou_A 103 EAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS------NQNGEIGLLLAETLIALNRSEDAEAVLXT 176 (287)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT------TSCHHHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC------CcchhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 344444444444444556666667777777777777777777763 34555677777777777777777777776
Q ss_pred HHHcCCCCchh-HHHHHHHHHHhhcCHHHHHHHHHHccc--C-ChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCC-C
Q 044786 143 LFKLGSSRNIS-LTGSLINFYGKFRCLEDADFVFSQLKR--H-NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKK-N 217 (340)
Q Consensus 143 ~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~ 217 (340)
+..... +.. ........+...++.++|...|++... | +...+..+...+...|++++|+..|++..+..... +
T Consensus 177 ~~~~~p--~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~ 254 (287)
T 3qou_A 177 IPLQDQ--DTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAAD 254 (287)
T ss_dssp SCGGGC--SHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGG
T ss_pred Cchhhc--chHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccc
Confidence 665543 222 222223335566666667777766542 2 55667777777777777777777777777643111 1
Q ss_pred hhhHHHHHHhcccCCchhc
Q 044786 218 SYTFSSVLKACGGVDDDGN 236 (340)
Q Consensus 218 ~~t~~~ll~~~~~~~~~~~ 236 (340)
...+..+...+...|+.++
T Consensus 255 ~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 255 GQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp GHHHHHHHHHHHHHCTTCH
T ss_pred chHHHHHHHHHHHcCCCCc
Confidence 4456677777777777655
No 102
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.94 E-value=1.8e-07 Score=72.59 Aligned_cols=179 Identities=8% Similarity=-0.087 Sum_probs=99.8
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHcccC-ChhhHHHHHHHHhccC----chhHHHHHHHHHh
Q 044786 136 GKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH-NTVVWTAKIVNNCREG----HFHQVFNDFKEMG 210 (340)
Q Consensus 136 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~li~~~~~~~----~~~~a~~~~~~m~ 210 (340)
|.+.|+...+.| ++..+..+...|...+++++|.+.|++..+. +...+..+-..|.. + ++++|+..|++..
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 334444444433 3444445555555555555555555554433 33444444444444 4 5555666555554
Q ss_pred hcccCCChhhHHHHHHhccc----CCchhchHHHHHHHHHHhCCC-ccHHHHHHHHHHHhc----cCCHHHHHHHHHHhh
Q 044786 211 RERIKKNSYTFSSVLKACGG----VDDDGNCGRQMHANIVKIGLE-SDEYVQCGLVDMYGK----CRLLRDAERVFELIV 281 (340)
Q Consensus 211 ~~~~~p~~~t~~~ll~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~A~~~~~~~~ 281 (340)
+.| +...+..+-..|.. .+++.+ +..+++...+.+.. .++..+..|-..|.. .+++++|.+.|++..
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~-A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAH-AITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHH-HHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHH-HHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 433 22333333334433 445434 44454444443321 124555566666666 678888888888887
Q ss_pred cC-CcHHHHHHHHHHHHHc-C-----chHHHHHHHHHHHHcCCccchh
Q 044786 282 DK-KNIASWNAMLVGYIRN-G-----LYVEATKFLYLMKASGIQIQES 322 (340)
Q Consensus 282 ~~-~~~~~~~~li~~~~~~-~-----~~~~a~~~~~~m~~~g~~~~~~ 322 (340)
.. ++...+..|...|... | ++++|+.+|++..+.|...-..
T Consensus 157 ~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~A~~ 204 (212)
T 3rjv_A 157 SLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDTGCE 204 (212)
T ss_dssp HTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 65 5666777777777654 2 7888999988888887544333
No 103
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.92 E-value=8.6e-08 Score=75.13 Aligned_cols=180 Identities=9% Similarity=-0.066 Sum_probs=89.5
Q ss_pred cchhHHHHHHhhhccchhhHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhcCChhHHHHHHhhcCc--CCcc----cHHH
Q 044786 10 TDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKP-TLLFLNRLLLMHVSCGQLDTARQLFDEMPL--RDFN----SWAV 82 (340)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~----~~~~ 82 (340)
+..+......+.+.|++++|.+.|+.+.....-.| ....+..+..++.+.|++++|...|+++.+ |+.. .+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 33444555566667777777777777765511111 124555666666677777777777766652 2221 1222
Q ss_pred HHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhH--------
Q 044786 83 MIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISL-------- 154 (340)
Q Consensus 83 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------- 154 (340)
+..++...|.. .+ ..|..+.......|++++|...|+.+.+..+. +...
T Consensus 84 ~g~~~~~~~~~-----~~-----------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~ 140 (225)
T 2yhc_A 84 RGLTNMALDDS-----AL-----------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLV 140 (225)
T ss_dssp HHHHHHHHHC------------------------------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHH
T ss_pred HHHHHHhhhhh-----hh-----------------hhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHH
Confidence 33333331100 00 00000111112234455555555544443221 1111
Q ss_pred ---------HHHHHHHHHhhcCHHHHHHHHHHcccC--C----hhhHHHHHHHHhccCchhHHHHHHHHHhhc
Q 044786 155 ---------TGSLINFYGKFRCLEDADFVFSQLKRH--N----TVVWTAKIVNNCREGHFHQVFNDFKEMGRE 212 (340)
Q Consensus 155 ---------~~~l~~~~~~~~~~~~a~~~~~~~~~~--~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 212 (340)
...+...|.+.|++++|...|+++.+. + ...+..+..+|.+.|++++|.+.++.+...
T Consensus 141 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 141 FLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 123455666777777777777776532 2 134666677777777777777777766654
No 104
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.92 E-value=9.1e-09 Score=75.19 Aligned_cols=135 Identities=6% Similarity=-0.088 Sum_probs=64.8
Q ss_pred hhhccchhhHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCChhHHHHHHhhcC---cCCcccHHHHHHHHHcccChhH
Q 044786 20 CTFQKDSAGAFELLNHIRKRVNIKPT-LLFLNRLLLMHVSCGQLDTARQLFDEMP---LRDFNSWAVMIVGYVDVADYQE 95 (340)
Q Consensus 20 ~~~~~~~~~a~~~~~~m~~~~g~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~ 95 (340)
+...|++++|++.+...... .|+ ...+-.+...|.+.|++++|++.|++.. ..+..+|..+...|...|++++
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~---~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPS---PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCS---HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcChHHHHHHHHHHhccc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHH
Confidence 33445555555555554432 222 2233344555555555555555555544 1234455555555555555555
Q ss_pred HHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHH-HHHHHHcCCCCchhHHHHHHHHHHh
Q 044786 96 CITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQV-HGLLFKLGSSRNISLTGSLINFYGK 164 (340)
Q Consensus 96 a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~ 164 (340)
|+..|++..+.. +-+..++..+...+.+.|+++++.+. ++...+..+. ++.+|......+..
T Consensus 84 A~~~~~~al~~~------p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~ 146 (150)
T 4ga2_A 84 AVECYRRSVELN------PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDC 146 (150)
T ss_dssp HHHHHHHHHHHC------TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHH
Confidence 555555555552 22344555555555555555444333 3444444322 33344443333333
No 105
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.91 E-value=1.4e-08 Score=93.01 Aligned_cols=167 Identities=6% Similarity=-0.052 Sum_probs=136.6
Q ss_pred HhcCChhHHHHHHhhcC-----------cCCcccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHH
Q 044786 57 VSCGQLDTARQLFDEMP-----------LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLK 125 (340)
Q Consensus 57 ~~~~~~~~a~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~ 125 (340)
...|++++|++.+++.. ..+...+..+...+...|++++|++.|++..+.. +-+...+..+..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~------p~~~~a~~~lg~ 475 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV------GWRWRLVWYRAV 475 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH------CCCHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC------cchHHHHHHHHH
Confidence 67799999999998876 3355678888899999999999999999999885 556778999999
Q ss_pred HhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHccc---CChhhHHHHHHHHhccCchhHH
Q 044786 126 ACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR---HNTVVWTAKIVNNCREGHFHQV 202 (340)
Q Consensus 126 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a 202 (340)
++...|++++|.+.|++..+.... +...+..+..+|.+.|++++ .+.|++..+ .+...|..+..++.+.|++++|
T Consensus 476 ~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A 553 (681)
T 2pzi_A 476 AELLTGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGA 553 (681)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999999988644 56788889999999999999 999998763 3567889999999999999999
Q ss_pred HHHHHHHhhcccCCC-hhhHHHHHHhcccCCc
Q 044786 203 FNDFKEMGRERIKKN-SYTFSSVLKACGGVDD 233 (340)
Q Consensus 203 ~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~ 233 (340)
+..|++..+. .|+ ...+..+..++...+.
T Consensus 554 ~~~~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 554 VRTLDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHHHHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 9999998774 465 4556666677766554
No 106
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.91 E-value=8.9e-08 Score=74.15 Aligned_cols=127 Identities=10% Similarity=-0.058 Sum_probs=95.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHhhcCcCCcccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHh
Q 044786 48 FLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKAC 127 (340)
Q Consensus 48 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~ 127 (340)
.+..+...+...|++++|.+.|++...++...|..+...+...|++++|++.|++..... +.+...+..+..++
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD------KHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------ccchHHHHHHHHHH
Confidence 345566677888999999999998887777788888888999999999999999988874 45667888888888
Q ss_pred hhccchhhHHHHHHHHHHcCCCC---------------chhHHHHHHHHHHhhcCHHHHHHHHHHccc
Q 044786 128 VCTMNMELGKQVHGLLFKLGSSR---------------NISLTGSLINFYGKFRCLEDADFVFSQLKR 180 (340)
Q Consensus 128 ~~~~~~~~a~~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 180 (340)
...|++++|.+.++...+..... ....+..+..+|.+.|++++|.+.|+...+
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 88888988888888887754321 124555666666666666666666666543
No 107
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.88 E-value=1.4e-08 Score=74.13 Aligned_cols=109 Identities=6% Similarity=-0.071 Sum_probs=54.6
Q ss_pred HHhcCChhHHHHHHhhcCcC---CcccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccc
Q 044786 56 HVSCGQLDTARQLFDEMPLR---DFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN 132 (340)
Q Consensus 56 ~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 132 (340)
+...|++++|++.++..... +...+-.+...|.+.|++++|++.|++..+.. +-+..+|..+..++.+.|+
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~------p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ------ERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTC
T ss_pred HHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCc
Confidence 33445555555555554432 22234445555555555555555555555552 2334455555555555555
Q ss_pred hhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHH
Q 044786 133 MELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171 (340)
Q Consensus 133 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 171 (340)
+++|...|+...+..+. +...+..+...|.+.|++++|
T Consensus 81 ~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a 118 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGR 118 (150)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSH
T ss_pred hHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHH
Confidence 55555555555554322 344444444555555554443
No 108
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.86 E-value=4.6e-08 Score=87.92 Aligned_cols=149 Identities=11% Similarity=-0.029 Sum_probs=103.5
Q ss_pred ccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCcC---CcccHHHHHHHHHcccChhHHHHH
Q 044786 23 QKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLR---DFNSWAVMIVGYVDVADYQECITL 99 (340)
Q Consensus 23 ~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~ 99 (340)
.|++++|.+.+++..+. .+.+...+..+...+.+.|++++|.+.|++..+. +...|..+...+...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH--RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 46788888888887755 2345778888888888889999998888877632 445677888888888999999998
Q ss_pred HHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhh---cCHHHHHHHHH
Q 044786 100 FAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF---RCLEDADFVFS 176 (340)
Q Consensus 100 ~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~ 176 (340)
+++..+.. +.+...+..+..++.+.|++++|.+.++...+.... +...+..+...+... |++++|.+.++
T Consensus 80 ~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~ 152 (568)
T 2vsy_A 80 LQQASDAA------PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVR 152 (568)
T ss_dssp HHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHH
T ss_pred HHHHHhcC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 88888874 445678888888888888888888888888877543 566777888888888 88888888888
Q ss_pred Hccc
Q 044786 177 QLKR 180 (340)
Q Consensus 177 ~~~~ 180 (340)
+..+
T Consensus 153 ~al~ 156 (568)
T 2vsy_A 153 AAVA 156 (568)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7653
No 109
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.85 E-value=1.6e-07 Score=72.83 Aligned_cols=173 Identities=10% Similarity=-0.061 Sum_probs=118.7
Q ss_pred hHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCcC-CcccHHHHHHHHHccc----ChhHHHHHHHH
Q 044786 28 GAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLR-DFNSWAVMIVGYVDVA----DYQECITLFAE 102 (340)
Q Consensus 28 ~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~li~~~~~~g----~~~~a~~~~~~ 102 (340)
+|.+.|+...+. | ++..+..|-..|...+++++|.+.|++..+. +...+..|-..|.. + ++++|.+.|++
T Consensus 4 eA~~~~~~aa~~-g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 4 EPGSQYQQQAEA-G---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp CTTHHHHHHHHT-T---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHC-C---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 456667666665 4 5677777777787888888888888877644 55566667777766 5 78888888888
Q ss_pred HHHhhcCCccccchHHHHHHHHHHhhh----ccchhhHHHHHHHHHHcCCC-CchhHHHHHHHHHHh----hcCHHHHHH
Q 044786 103 MMKRKKGHMLLVFPAWIIVCVLKACVC----TMNMELGKQVHGLLFKLGSS-RNISLTGSLINFYGK----FRCLEDADF 173 (340)
Q Consensus 103 m~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~ 173 (340)
..+.+ +...+..+...+.. .+++++|.+.|+...+.|.. .++..+..|...|.. .+++++|..
T Consensus 79 A~~~g--------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 150 (212)
T 3rjv_A 79 AVEAG--------SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASE 150 (212)
T ss_dssp HHHTT--------CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHH
T ss_pred HHHCC--------CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 76552 34455566666665 66788888888877776632 125566677777777 677888888
Q ss_pred HHHHccc--CChhhHHHHHHHHhcc-C-----chhHHHHHHHHHhhcc
Q 044786 174 VFSQLKR--HNTVVWTAKIVNNCRE-G-----HFHQVFNDFKEMGRER 213 (340)
Q Consensus 174 ~~~~~~~--~~~~~~~~li~~~~~~-~-----~~~~a~~~~~~m~~~~ 213 (340)
.|++..+ .+...+..+-..|... | ++++|...|++..+.|
T Consensus 151 ~~~~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 151 YFKGSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 8877653 3555666666666543 2 6778888887777765
No 110
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.85 E-value=2.1e-07 Score=72.86 Aligned_cols=149 Identities=9% Similarity=-0.037 Sum_probs=84.9
Q ss_pred chhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCChhHHHHHHhhcCcCCcccHHHHHHHHHc
Q 044786 11 DMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTL-LFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVD 89 (340)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~ 89 (340)
..+..+..++.+.|++++|++.|+.+.+...-.+.. ..+-.+..++.+.+.- .+ ..|..+...+..
T Consensus 42 ~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~-----~~--------~~~~~~~~~~~~ 108 (225)
T 2yhc_A 42 QVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDS-----AL--------QGFFGVDRSDRD 108 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC---------------------------C
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhh-----hh--------hhhhccchhhcC
Confidence 567788889999999999999999999872212221 2344444444432210 00 011112222333
Q ss_pred ccChhHHHHHHHHHHHhhcCCccccchHH------------------HHHHHHHHhhhccchhhHHHHHHHHHHcCCCCc
Q 044786 90 VADYQECITLFAEMMKRKKGHMLLVFPAW------------------IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRN 151 (340)
Q Consensus 90 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~~------------------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 151 (340)
.|++++|+..|+++.+.. |+.. ....+...+.+.|++++|...|+.+.+......
T Consensus 109 ~~~~~~A~~~~~~~l~~~-------P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~ 181 (225)
T 2yhc_A 109 PQQARAAFSDFSKLVRGY-------PNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQ 181 (225)
T ss_dssp CHHHHHHHHHHHHHHTTC-------TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSH
T ss_pred cHHHHHHHHHHHHHHHHC-------cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCC
Confidence 444555555555544431 1110 112345667778888888888888877643321
Q ss_pred --hhHHHHHHHHHHhhcCHHHHHHHHHHcc
Q 044786 152 --ISLTGSLINFYGKFRCLEDADFVFSQLK 179 (340)
Q Consensus 152 --~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 179 (340)
...+..+..+|.+.|++++|.+.++.+.
T Consensus 182 ~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~ 211 (225)
T 2yhc_A 182 ATRDALPLMENAYRQMQMNAQAEKVAKIIA 211 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 2456777888888888888888887765
No 111
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.85 E-value=5.2e-07 Score=81.88 Aligned_cols=212 Identities=7% Similarity=0.002 Sum_probs=131.0
Q ss_pred CcchhHHHHHHhhhccchhhHH-HHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCc-------------
Q 044786 9 TTDMYTCLIKECTFQKDSAGAF-ELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL------------- 74 (340)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~-~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~------------- 74 (340)
.+..|-..++.+.+.|+.+.|. ++|+..... ++.+...|-..+...-+.|+++.|.++|+.+..
T Consensus 342 ~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~--~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~ 419 (679)
T 4e6h_A 342 APEIWFNMANYQGEKNTDSTVITKYLKLGQQC--IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDD 419 (679)
T ss_dssp CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 3445555555556667777775 777777654 555666666677777777778777777776652
Q ss_pred CC------------cccHHHHHHHHHcccChhHHHHHHHHHHHh-hcCCccccchHHHHHHHHHHhhhccchhhHHHHHH
Q 044786 75 RD------------FNSWAVMIVGYVDVADYQECITLFAEMMKR-KKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHG 141 (340)
Q Consensus 75 ~~------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 141 (340)
|+ ..+|-..+....+.|..+.|.++|.+.++. + .. .+......+.+.... .++.+.|.++|+
T Consensus 420 p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~---~~~lyi~~A~lE~~~-~~d~e~Ar~ife 494 (679)
T 4e6h_A 420 PTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LV---TPDIYLENAYIEYHI-SKDTKTACKVLE 494 (679)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GS---CTHHHHHHHHHHHTT-TSCCHHHHHHHH
T ss_pred CcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CC---ChHHHHHHHHHHHHh-CCCHHHHHHHHH
Confidence 21 124666666666777777777777777665 2 11 222333233333221 244777777777
Q ss_pred HHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHcccCC------hhhHHHHHHHHhccCchhHHHHHHHHHhhcccC
Q 044786 142 LLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHN------TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIK 215 (340)
Q Consensus 142 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 215 (340)
...+. ...+...+...++.....|+.+.|..+|+...... ...|...+.--.+.|+.+.+..+.+++.+. .
T Consensus 495 ~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~ 571 (679)
T 4e6h_A 495 LGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--F 571 (679)
T ss_dssp HHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--S
T ss_pred HHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C
Confidence 77665 22345555666676777777777887777765432 245666777666777777777777777764 4
Q ss_pred CChhhHHHHHHhccc
Q 044786 216 KNSYTFSSVLKACGG 230 (340)
Q Consensus 216 p~~~t~~~ll~~~~~ 230 (340)
|+......++.-|.-
T Consensus 572 P~~~~~~~f~~ry~~ 586 (679)
T 4e6h_A 572 PEVNKLEEFTNKYKV 586 (679)
T ss_dssp TTCCHHHHHHHHTCB
T ss_pred CCCcHHHHHHHHhcC
Confidence 555555555555543
No 112
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.83 E-value=4.7e-08 Score=87.86 Aligned_cols=148 Identities=5% Similarity=-0.067 Sum_probs=115.3
Q ss_pred cCChhHHHHHHhhcCcC---CcccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhh
Q 044786 59 CGQLDTARQLFDEMPLR---DFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMEL 135 (340)
Q Consensus 59 ~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 135 (340)
.|++++|.+.|++..+. +...|..+...+...|++++|.+.|++..+.. +.+...+..+...+...|++++
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~lg~~~~~~g~~~~ 75 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH------PGHPEAVARLGRVRWTQQRHAE 75 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS------TTCHHHHHHHHHHHHHTTCHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHH
Confidence 47889999999988743 45578889999999999999999999999874 4567789999999999999999
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHccc---CChhhHHHHHHHHhcc---CchhHHHHHHHHH
Q 044786 136 GKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR---HNTVVWTAKIVNNCRE---GHFHQVFNDFKEM 209 (340)
Q Consensus 136 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~---~~~~~a~~~~~~m 209 (340)
|.+.+++..+.... +...+..+..+|.+.|++++|.+.|++..+ .+...+..+...+... |+.++|.+.+++.
T Consensus 76 A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 76 AAVLLQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 99999999988643 677899999999999999999999999753 3567888899999999 9999999999999
Q ss_pred hhcc
Q 044786 210 GRER 213 (340)
Q Consensus 210 ~~~~ 213 (340)
.+.+
T Consensus 155 l~~~ 158 (568)
T 2vsy_A 155 VAQG 158 (568)
T ss_dssp HHHT
T ss_pred HhcC
Confidence 8754
No 113
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.83 E-value=6e-08 Score=74.43 Aligned_cols=154 Identities=8% Similarity=-0.044 Sum_probs=87.6
Q ss_pred hcCChhHHHH---HHhhcCcCCcccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchh
Q 044786 58 SCGQLDTARQ---LFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNME 134 (340)
Q Consensus 58 ~~~~~~~a~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 134 (340)
..|++++|.+ .+..-......++..+...+...|++++|...+++................++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4456666666 3332111223345566666666666666666666666532111101233446666666777777777
Q ss_pred hHHHHHHHHHHc----CCCC--chhHHHHHHHHHHhhcCHHHHHHHHHHccc-----CC----hhhHHHHHHHHhccCch
Q 044786 135 LGKQVHGLLFKL----GSSR--NISLTGSLINFYGKFRCLEDADFVFSQLKR-----HN----TVVWTAKIVNNCREGHF 199 (340)
Q Consensus 135 ~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~ 199 (340)
+|...+++..+. +-.+ ....+..+...+...|++++|...+++..+ .+ ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 777776665543 1111 234466667777777777777777766542 11 22356677777788888
Q ss_pred hHHHHHHHHHhh
Q 044786 200 HQVFNDFKEMGR 211 (340)
Q Consensus 200 ~~a~~~~~~m~~ 211 (340)
++|...+++..+
T Consensus 164 ~~A~~~~~~al~ 175 (203)
T 3gw4_A 164 LEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888777654
No 114
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.79 E-value=2e-06 Score=70.15 Aligned_cols=150 Identities=11% Similarity=0.124 Sum_probs=67.7
Q ss_pred cchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHH--HHHHHHHHcccC---ChhhHHHHHHHHhccCc------h
Q 044786 131 MNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLE--DADFVFSQLKRH---NTVVWTAKIVNNCREGH------F 199 (340)
Q Consensus 131 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~---~~~~~~~li~~~~~~~~------~ 199 (340)
+++++++++++.+.+.... +...|+--.-.+.+.|.++ ++.+.++++.+. |...|+.-.....+.++ +
T Consensus 124 ~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhH
Confidence 3444444444444444322 3333333333333344444 445554444322 33344443333444343 5
Q ss_pred hHHHHHHHHHhhcccCCChhhHHHHHHhcccCCchhchHHHHHHHHHHhC--CCccHHHHHHHHHHHhccCCHHHHHHHH
Q 044786 200 HQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIG--LESDEYVQCGLVDMYGKCRLLRDAERVF 277 (340)
Q Consensus 200 ~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~A~~~~ 277 (340)
+++++.++++.... +-|...|+-.-..+.+.|+..+....+...+...+ -+.++..+..+.+.|.+.|+.++|.+++
T Consensus 203 ~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 203 DEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 56666666655532 12344444444444444443332333333322211 1224455556666666666666666666
Q ss_pred HHhhc
Q 044786 278 ELIVD 282 (340)
Q Consensus 278 ~~~~~ 282 (340)
+.+..
T Consensus 282 ~~l~~ 286 (306)
T 3dra_A 282 DLLKS 286 (306)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66553
No 115
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.79 E-value=1.5e-07 Score=77.49 Aligned_cols=161 Identities=9% Similarity=0.019 Sum_probs=115.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHhhcCc-----CC----cccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHH
Q 044786 49 LNRLLLMHVSCGQLDTARQLFDEMPL-----RD----FNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWI 119 (340)
Q Consensus 49 ~~~li~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ 119 (340)
|+.....|...|++++|.+.|++... .+ ..+|+.+...|...|++++|+..|++..+.............+
T Consensus 39 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~ 118 (307)
T 2ifu_A 39 YAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMA 118 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34445567778888888888776552 11 2367778888888899999999998887653111101123457
Q ss_pred HHHHHHHhhhccchhhHHHHHHHHHHcCCCC-----chhHHHHHHHHHHhhcCHHHHHHHHHHcccC-----C----hhh
Q 044786 120 IVCVLKACVCTMNMELGKQVHGLLFKLGSSR-----NISLTGSLINFYGKFRCLEDADFVFSQLKRH-----N----TVV 185 (340)
Q Consensus 120 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~----~~~ 185 (340)
+..+...+.. |++++|...|++..+..... ...++..+...|.+.|++++|...|++..+. + ...
T Consensus 119 ~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 197 (307)
T 2ifu_A 119 LDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKK 197 (307)
T ss_dssp HHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHH
Confidence 8888888888 99999999998776542111 1457788889999999999999999887532 1 225
Q ss_pred HHHHHHHHhccCchhHHHHHHHHHh
Q 044786 186 WTAKIVNNCREGHFHQVFNDFKEMG 210 (340)
Q Consensus 186 ~~~li~~~~~~~~~~~a~~~~~~m~ 210 (340)
+..+..++...|++++|...|++..
T Consensus 198 ~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 198 CIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 6667777778899999999999987
No 116
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.71 E-value=5.3e-07 Score=69.74 Aligned_cols=133 Identities=12% Similarity=0.052 Sum_probs=108.8
Q ss_pred hhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCc---CCcccHHHHHHHHH
Q 044786 12 MYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL---RDFNSWAVMIVGYV 88 (340)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~ 88 (340)
.+..+...+...|++++|.+.|+.. +.|+...+..+...+.+.|++++|.+.|+.... .+...|..+...+.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 3456667788899999999999866 356889999999999999999999999998763 35567888999999
Q ss_pred cccChhHHHHHHHHHHHhhcCCc----------cccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCC
Q 044786 89 DVADYQECITLFAEMMKRKKGHM----------LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSS 149 (340)
Q Consensus 89 ~~g~~~~a~~~~~~m~~~~~~~~----------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 149 (340)
..|++++|++.|++..+...+.. ..+-....+..+..++...|++++|.+.++...+....
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 99999999999999998631110 00123478899999999999999999999999887644
No 117
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.71 E-value=7.2e-07 Score=72.90 Aligned_cols=158 Identities=9% Similarity=0.033 Sum_probs=96.8
Q ss_pred cHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCC---Cc--hh
Q 044786 79 SWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSS---RN--IS 153 (340)
Q Consensus 79 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~--~~ 153 (340)
.+...+..+...|++++|.+.+.+..+..............+..+...+...|++++|...++...+.... +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 45556777888899999999888887763110000011123344555666777888888888877654221 11 34
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHccc-----CC-----hhhHHHHHHHHhccCchhHHHHHHHHHhhcc----cCCC-h
Q 044786 154 LTGSLINFYGKFRCLEDADFVFSQLKR-----HN-----TVVWTAKIVNNCREGHFHQVFNDFKEMGRER----IKKN-S 218 (340)
Q Consensus 154 ~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~----~~p~-~ 218 (340)
+|+.+...|...|++++|...|++..+ ++ ..+++.+...|...|++++|+..+++..+.. ..+. .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 677778888888888888888777541 11 2467777778888888888888887765421 0000 2
Q ss_pred hhHHHHHHhcccCCchhc
Q 044786 219 YTFSSVLKACGGVDDDGN 236 (340)
Q Consensus 219 ~t~~~ll~~~~~~~~~~~ 236 (340)
.+|..+-..+...|+.++
T Consensus 237 ~~~~~lg~~y~~~g~~~~ 254 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEA 254 (293)
T ss_dssp HHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHcCCcHH
Confidence 334444445555555544
No 118
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.70 E-value=6.9e-07 Score=73.01 Aligned_cols=161 Identities=6% Similarity=-0.006 Sum_probs=103.2
Q ss_pred HHHHHHHhcCChhHHHHHHhhcCcCCc---c------cHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHH
Q 044786 51 RLLLMHVSCGQLDTARQLFDEMPLRDF---N------SWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIV 121 (340)
Q Consensus 51 ~li~~~~~~~~~~~a~~~~~~~~~~~~---~------~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~ 121 (340)
..+..+.+.|++++|.++++...+... . .+..+...+...|++++|+..|++................+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 335667778888888888877653211 1 2233555666677888888888888774211100011133677
Q ss_pred HHHHHhhhccchhhHHHHHHHHHHc-----CCCC-chhHHHHHHHHHHhhcCHHHHHHHHHHcccC---------ChhhH
Q 044786 122 CVLKACVCTMNMELGKQVHGLLFKL-----GSSR-NISLTGSLINFYGKFRCLEDADFVFSQLKRH---------NTVVW 186 (340)
Q Consensus 122 ~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~ 186 (340)
.+...+...|++++|...++.+.+. +..+ ...++..+...|.+.|++++|...+++..+- -..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 8888888888888888888777631 1111 2236677777888888888888877765421 14567
Q ss_pred HHHHHHHhccCc-hhHHHHHHHHHhh
Q 044786 187 TAKIVNNCREGH-FHQVFNDFKEMGR 211 (340)
Q Consensus 187 ~~li~~~~~~~~-~~~a~~~~~~m~~ 211 (340)
..+..+|...|+ +++|...+++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 777777777774 5778777777653
No 119
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.69 E-value=6.3e-07 Score=66.12 Aligned_cols=93 Identities=6% Similarity=0.025 Sum_probs=52.7
Q ss_pred hhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCc---CCcccHHHHHHHHH
Q 044786 12 MYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL---RDFNSWAVMIVGYV 88 (340)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~ 88 (340)
.+..+...+...|+++.|...|+..... .+.+...+..+...+...|++++|.+.|++... .+...|..+...+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3444555555666666666666666654 233455555566666666666666666655441 23334555555566
Q ss_pred cccChhHHHHHHHHHHHh
Q 044786 89 DVADYQECITLFAEMMKR 106 (340)
Q Consensus 89 ~~g~~~~a~~~~~~m~~~ 106 (340)
..|++++|.+.|++..+.
T Consensus 93 ~~~~~~~A~~~~~~a~~~ 110 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKV 110 (166)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHh
Confidence 666666666666666555
No 120
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.69 E-value=4.4e-07 Score=74.16 Aligned_cols=164 Identities=10% Similarity=-0.024 Sum_probs=122.6
Q ss_pred HHHHHhhhccchhhHHHHHHHHHhhcCCCCCH----HHHHHHHHHHHhcCChhHHHHHHhhcCc-----CCc----ccHH
Q 044786 15 CLIKECTFQKDSAGAFELLNHIRKRVNIKPTL----LFLNRLLLMHVSCGQLDTARQLFDEMPL-----RDF----NSWA 81 (340)
Q Consensus 15 ~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~----~~~~ 81 (340)
..+..+...|++++|.++++.........|+. ..+..+...+...+++++|++.|+.... ++. .+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34677788999999999999998762333442 2344567777788899999999988753 222 1588
Q ss_pred HHHHHHHcccChhHHHHHHHHHHHhhcCCcccc-chHHHHHHHHHHhhhccchhhHHHHHHHHHHcC----CCC-chhHH
Q 044786 82 VMIVGYVDVADYQECITLFAEMMKRKKGHMLLV-FPAWIIVCVLKACVCTMNMELGKQVHGLLFKLG----SSR-NISLT 155 (340)
Q Consensus 82 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~~ 155 (340)
.+...|...|++++|+..|++..+.-...+... ....++..+...+.+.|++++|...++...+.. ..+ -..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 899999999999999999999986321110012 233488999999999999999999998876542 222 25688
Q ss_pred HHHHHHHHhhcC-HHHHHHHHHHc
Q 044786 156 GSLINFYGKFRC-LEDADFVFSQL 178 (340)
Q Consensus 156 ~~l~~~~~~~~~-~~~a~~~~~~~ 178 (340)
..+..+|.+.|+ +++|.+.|++.
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHH
Confidence 889999999994 69998887764
No 121
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.69 E-value=2.1e-07 Score=75.55 Aligned_cols=190 Identities=7% Similarity=-0.056 Sum_probs=129.5
Q ss_pred CCcchhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCcC---CcccHHHHH
Q 044786 8 ITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLR---DFNSWAVMI 84 (340)
Q Consensus 8 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li 84 (340)
.+...+..+...+.+.|++++|.+.|+..... .+.+...|..+..++.+.|++++|.+.++...+. +...+..+.
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 45677888889999999999999999999987 3447889999999999999999999999998743 455788899
Q ss_pred HHHHcccChhHHHHHHHHHHHhhcCCccccchH-HHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 044786 85 VGYVDVADYQECITLFAEMMKRKKGHMLLVFPA-WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYG 163 (340)
Q Consensus 85 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 163 (340)
.++...|++++|++.|++..+.. |+. ..+...+....+. ..... +..........+......+...
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~-------p~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~i~~~l~~l-- 146 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLA-------KEQRLNFGDDIPSALRI---AKKKR-WNSIEERRIHQESELHSYLTRL-- 146 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH-------HHTTCCCCSHHHHHHHH---HHHHH-HHHHHHTCCCCCCHHHHHHHHH--
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-------ccchhhHHHHHHHHHHH---HHHHH-HHHHHHHHHhhhHHHHHHHHHH--
Confidence 99999999999999999998873 221 0111111111111 11111 1223333344444444444332
Q ss_pred hhcCHHHHHHHHHHcccCC---hhhHHHHHHHHhcc-CchhHHHHHHHHHhhc
Q 044786 164 KFRCLEDADFVFSQLKRHN---TVVWTAKIVNNCRE-GHFHQVFNDFKEMGRE 212 (340)
Q Consensus 164 ~~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~ 212 (340)
..|++++|.+.++...+.+ ......+-..+.+. +.+++|.++|++..+.
T Consensus 147 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 147 IAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 2689999999888876543 22333333334443 6788999999888653
No 122
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.67 E-value=3e-05 Score=63.27 Aligned_cols=229 Identities=7% Similarity=-0.091 Sum_probs=168.4
Q ss_pred hcc-chhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcC--ChhHHHHHHhhcCcC---CcccHHHHHHHH----Hcc-
Q 044786 22 FQK-DSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCG--QLDTARQLFDEMPLR---DFNSWAVMIVGY----VDV- 90 (340)
Q Consensus 22 ~~~-~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~---~~~~~~~li~~~----~~~- 90 (340)
+.| ..++|+++++.+... -+-+...|+.--..+...| +++++++.++.+... +..+|+.--..+ ...
T Consensus 44 ~~~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 44 KAEEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTT
T ss_pred HcCCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhcc
Confidence 444 456899999999977 3445677888778888888 999999999998743 445666544444 444
Q ss_pred --cChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchh--hHHHHHHHHHHcCCCCchhHHHHHHHHHHhhc
Q 044786 91 --ADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNME--LGKQVHGLLFKLGSSRNISLTGSLINFYGKFR 166 (340)
Q Consensus 91 --g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 166 (340)
+++++++++++++.+.. +-+..+|+.-.-...+.|.++ ++++.++.+.+..+. |...|+--...+...+
T Consensus 122 ~~~~~~~EL~~~~~~l~~~------pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~ 194 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSSD------PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKK 194 (306)
T ss_dssp TCCCTHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSG
T ss_pred ccCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcc
Confidence 78999999999999985 567778887777777788888 999999999998765 6667766666666666
Q ss_pred C------HHHHHHHHHHccc---CChhhHHHHHHHHhccCchhH-HHHHHHHHhhcc--cCCChhhHHHHHHhcccCCch
Q 044786 167 C------LEDADFVFSQLKR---HNTVVWTAKIVNNCREGHFHQ-VFNDFKEMGRER--IKKNSYTFSSVLKACGGVDDD 234 (340)
Q Consensus 167 ~------~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~-a~~~~~~m~~~~--~~p~~~t~~~ll~~~~~~~~~ 234 (340)
+ ++++.+.++.+.. .|...|+-+-..+.+.|+..+ +..+..+..+.+ -..+...+..+...+.+.|+.
T Consensus 195 ~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~ 274 (306)
T 3dra_A 195 HLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKY 274 (306)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCH
T ss_pred ccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCH
Confidence 6 8888888887653 377889888888888887554 556777766533 133567788888889999998
Q ss_pred hchHHHHHHHHHHhCCCccHHHHHHH
Q 044786 235 GNCGRQMHANIVKIGLESDEYVQCGL 260 (340)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~l 260 (340)
++ |..+++.+...--+.....|+..
T Consensus 275 ~~-A~~~~~~l~~~~Dpir~~yW~~~ 299 (306)
T 3dra_A 275 NE-SRTVYDLLKSKYNPIRSNFWDYQ 299 (306)
T ss_dssp HH-HHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HH-HHHHHHHHHhccChHHHHHHHHH
Confidence 77 88888877653223344455443
No 123
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.65 E-value=9.3e-07 Score=65.17 Aligned_cols=124 Identities=9% Similarity=-0.027 Sum_probs=61.4
Q ss_pred HHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHH
Q 044786 80 WAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLI 159 (340)
Q Consensus 80 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 159 (340)
|..+...+...|++++|...|++..... +.+..++..+...+...|++++|...++...+.... +...+..+.
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a 88 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELN------PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRA 88 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHH
Confidence 4444444555555555555555555442 223444555555555555555555555555544321 344455555
Q ss_pred HHHHhhcCHHHHHHHHHHcccC---ChhhHHH--HHHHHhccCchhHHHHHHHHHh
Q 044786 160 NFYGKFRCLEDADFVFSQLKRH---NTVVWTA--KIVNNCREGHFHQVFNDFKEMG 210 (340)
Q Consensus 160 ~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~--li~~~~~~~~~~~a~~~~~~m~ 210 (340)
.++...|++++|...|++..+. +...+.. ....+...|++++|+..+.+..
T Consensus 89 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 89 ASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 5555555555555555554321 2222322 2222445566666666665543
No 124
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.65 E-value=5.7e-07 Score=62.62 Aligned_cols=94 Identities=16% Similarity=0.146 Sum_probs=51.8
Q ss_pred chhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCc---CCcccHHHHHHHH
Q 044786 11 DMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL---RDFNSWAVMIVGY 87 (340)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~ 87 (340)
..|..+...+...|++++|.+.++.+.+. .+.+..++..+...+.+.|++++|...|+++.. .+..++..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 44555555566666666666666666554 233455555555555556666666655555441 2333455555555
Q ss_pred HcccChhHHHHHHHHHHHh
Q 044786 88 VDVADYQECITLFAEMMKR 106 (340)
Q Consensus 88 ~~~g~~~~a~~~~~~m~~~ 106 (340)
...|++++|.+.++++.+.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHh
Confidence 5555555555555555554
No 125
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.65 E-value=1.9e-07 Score=68.01 Aligned_cols=27 Identities=7% Similarity=0.034 Sum_probs=11.7
Q ss_pred HHHHHHHHHcccChhHHHHHHHHHHHh
Q 044786 80 WAVMIVGYVDVADYQECITLFAEMMKR 106 (340)
Q Consensus 80 ~~~li~~~~~~g~~~~a~~~~~~m~~~ 106 (340)
+..+...+.+.|++++|++.|++....
T Consensus 39 ~~~lg~~~~~~g~~~eA~~~~~~al~~ 65 (151)
T 3gyz_A 39 IYSYAYDFYNKGRIEEAEVFFRFLCIY 65 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 333334444444444444444444444
No 126
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.64 E-value=9.3e-07 Score=61.52 Aligned_cols=96 Identities=14% Similarity=0.080 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHhhcCc---CCcccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHH
Q 044786 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPL---RDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVC 122 (340)
Q Consensus 46 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ 122 (340)
...+..+...+.+.|++++|.+.|+++.. .+..++..+...+...|++++|...++++.... +.+..++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~ 82 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD------PNNAEAWYN 82 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC------CccHHHHHH
Confidence 34555555556666666666666655542 233345555555666666666666666655552 234445555
Q ss_pred HHHHhhhccchhhHHHHHHHHHHcC
Q 044786 123 VLKACVCTMNMELGKQVHGLLFKLG 147 (340)
Q Consensus 123 ll~~~~~~~~~~~a~~~~~~~~~~~ 147 (340)
+...+...|++++|...++.+.+..
T Consensus 83 la~~~~~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 83 LGNAYYKQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 5555555566666666655555543
No 127
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.63 E-value=3.6e-07 Score=64.26 Aligned_cols=114 Identities=9% Similarity=-0.062 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHhhcCc---CCcccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHH
Q 044786 47 LFLNRLLLMHVSCGQLDTARQLFDEMPL---RDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCV 123 (340)
Q Consensus 47 ~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~l 123 (340)
..+..+...+...|++++|.+.|++... .+...+..+...+...|++++|.+.+++..... +.+...+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~ 86 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID------PAYSKAYGRM 86 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC------ccCHHHHHHH
Confidence 3344444444444555555544444331 123344444445555555555555555555442 2234444555
Q ss_pred HHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcC
Q 044786 124 LKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC 167 (340)
Q Consensus 124 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 167 (340)
...+...|++++|...++...+.... +...+..+..++.+.|+
T Consensus 87 ~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 87 GLALSSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhc
Confidence 55555555555555555555544432 33444444444444443
No 128
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.63 E-value=1.9e-06 Score=70.32 Aligned_cols=167 Identities=5% Similarity=-0.042 Sum_probs=120.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHhhcCcC--Cc-------ccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccc
Q 044786 45 TLLFLNRLLLMHVSCGQLDTARQLFDEMPLR--DF-------NSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVF 115 (340)
Q Consensus 45 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 115 (340)
....+...+..+...|++++|.+.++...+. .. ..+..+...+...|++++|+..+++............-
T Consensus 74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 153 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ 153 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHH
Confidence 4567777788888999999999988765422 11 12334556677888999999999988764211110111
Q ss_pred hHHHHHHHHHHhhhccchhhHHHHHHHHH---HcCC-CC--chhHHHHHHHHHHhhcCHHHHHHHHHHcccC--------
Q 044786 116 PAWIIVCVLKACVCTMNMELGKQVHGLLF---KLGS-SR--NISLTGSLINFYGKFRCLEDADFVFSQLKRH-------- 181 (340)
Q Consensus 116 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------- 181 (340)
...+++.+...+...|++++|...++... +... .+ ...++..+...|.+.|++++|...+++..+-
T Consensus 154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~ 233 (293)
T 2qfc_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHH
Confidence 25699999999999999999999998775 4322 11 1257888899999999999999998876421
Q ss_pred -ChhhHHHHHHHHhccCchhHH-HHHHHHHhh
Q 044786 182 -NTVVWTAKIVNNCREGHFHQV-FNDFKEMGR 211 (340)
Q Consensus 182 -~~~~~~~li~~~~~~~~~~~a-~~~~~~m~~ 211 (340)
-..+|..+...|...|++++| ...+++...
T Consensus 234 ~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp SHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 145688888999999999999 777777653
No 129
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.63 E-value=7.7e-07 Score=62.65 Aligned_cols=92 Identities=7% Similarity=-0.055 Sum_probs=41.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHhhcC---cCCcccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHH
Q 044786 49 LNRLLLMHVSCGQLDTARQLFDEMP---LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLK 125 (340)
Q Consensus 49 ~~~li~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~ 125 (340)
+......+.+.|++++|++.|++.. ..+...|..+..++.+.|++++|+..|++.++.+ +.+...|..+..
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~------p~~~~a~~~lg~ 89 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD------SKFIKGYIRKAA 89 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh------hhhhHHHHHHHH
Confidence 3344444444444444444444433 1133344444444444455555555554444442 223334444444
Q ss_pred HhhhccchhhHHHHHHHHHHc
Q 044786 126 ACVCTMNMELGKQVHGLLFKL 146 (340)
Q Consensus 126 ~~~~~~~~~~a~~~~~~~~~~ 146 (340)
++...|++++|.+.|+...+.
T Consensus 90 ~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 90 CLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHH
Confidence 444444444444444444444
No 130
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.62 E-value=6.3e-07 Score=63.33 Aligned_cols=95 Identities=12% Similarity=0.074 Sum_probs=44.8
Q ss_pred cchhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCc---CCcccHHHHHHH
Q 044786 10 TDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL---RDFNSWAVMIVG 86 (340)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~ 86 (340)
...|..+...+.+.|++++|.+.|+...+. .+.+...+..+...+...|++++|.+.|++..+ .+...+..+...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 334444555555555555555555555443 122344444444455555555555555544431 122334444444
Q ss_pred HHcccChhHHHHHHHHHHHh
Q 044786 87 YVDVADYQECITLFAEMMKR 106 (340)
Q Consensus 87 ~~~~g~~~~a~~~~~~m~~~ 106 (340)
+...|++++|.+.|++..+.
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHh
Confidence 44555555555555544444
No 131
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.61 E-value=6.7e-05 Score=65.86 Aligned_cols=288 Identities=8% Similarity=0.009 Sum_probs=166.5
Q ss_pred CCcchhHHHHHHhhhccc-hhhHHHHHHHHHhhcCC-CCCHHHHHHHHHHHH----hcCChhHHHHHHhhcCc-CCcc--
Q 044786 8 ITTDMYTCLIKECTFQKD-SAGAFELLNHIRKRVNI-KPTLLFLNRLLLMHV----SCGQLDTARQLFDEMPL-RDFN-- 78 (340)
Q Consensus 8 ~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~g~-~~~~~~~~~li~~~~----~~~~~~~a~~~~~~~~~-~~~~-- 78 (340)
|+...|...+....+.++ .+....+|+......|. +++...|...+..+. ..++++.+.++|++... |...
T Consensus 45 ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~ 124 (493)
T 2uy1_A 45 YNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLS 124 (493)
T ss_dssp CCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHH
T ss_pred CCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHH
Confidence 566677776666666553 35566677776665343 235566666665543 23556667777766542 1100
Q ss_pred -------------------------------------------------cHHHHHHHHHcc--c-----ChhHHHHHHHH
Q 044786 79 -------------------------------------------------SWAVMIVGYVDV--A-----DYQECITLFAE 102 (340)
Q Consensus 79 -------------------------------------------------~~~~li~~~~~~--g-----~~~~a~~~~~~ 102 (340)
.|...+.--... | ..+.+..+|++
T Consensus 125 ~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~ 204 (493)
T 2uy1_A 125 ELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNY 204 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHH
Confidence 111111111010 0 02234456666
Q ss_pred HHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHH-HHHHHHcc--
Q 044786 103 MMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA-DFVFSQLK-- 179 (340)
Q Consensus 103 m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~-- 179 (340)
.+... +.+...|...+..+.+.|+.+.|..++++.... +.+...+. .|....+.++. ..+.+...
T Consensus 205 al~~~------p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~~~~l~~~~~~~ 272 (493)
T 2uy1_A 205 ILDSF------YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAVYGDLKRKYSMG 272 (493)
T ss_dssp HHHHT------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHHHHHHHHHTC--
T ss_pred HHHcC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHHHHHHHHHHHhh
Confidence 55542 344556666666677778888888888888877 22332222 12222111111 11111110
Q ss_pred ----------cCChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCChhhHH--HHHHhcccCCchhchHHHHHHHHHH
Q 044786 180 ----------RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFS--SVLKACGGVDDDGNCGRQMHANIVK 247 (340)
Q Consensus 180 ----------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~--~ll~~~~~~~~~~~~~~~~~~~~~~ 247 (340)
......|...+....+.+..+.|..+|++. +. ..++...|. +.+.... .++.+. +..+++...+
T Consensus 273 ~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~-~~d~~~-ar~ife~al~ 348 (493)
T 2uy1_A 273 EAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYA-TGSRAT-PYNIFSSGLL 348 (493)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHH-HCCSHH-HHHHHHHHHH
T ss_pred ccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHH-CCChHH-HHHHHHHHHH
Confidence 001234666677776788899999999998 32 112333332 2222222 224544 8888888777
Q ss_pred hCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhcCCcHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Q 044786 248 IGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKA 314 (340)
Q Consensus 248 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 314 (340)
.. +-++..+...++...+.|+.+.|..+|+++. .....|...+.--...|+.+.+.+++++...
T Consensus 349 ~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 349 KH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 53 3345567778888889999999999999984 4677888888887888999999998888764
No 132
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.60 E-value=9.7e-07 Score=62.33 Aligned_cols=115 Identities=12% Similarity=-0.011 Sum_probs=69.9
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHhhcCcC---CcccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHH
Q 044786 44 PTLLFLNRLLLMHVSCGQLDTARQLFDEMPLR---DFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWII 120 (340)
Q Consensus 44 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ 120 (340)
.+...+..+...+.+.|++++|.+.|++.... +...+..+...+...|++++|++.+++..+.. +.+...+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~------~~~~~~~ 87 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE------PTFIKGY 87 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC------TTCHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC------CCchHHH
Confidence 34556666667777777777777777765422 34456666666777777777777777776663 3345566
Q ss_pred HHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhh
Q 044786 121 VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165 (340)
Q Consensus 121 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 165 (340)
..+...+...|++++|.+.++...+.... +...+..+..++.+.
T Consensus 88 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 88 TRKAAALEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHh
Confidence 66666666667777777776666655322 233444444444433
No 133
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.60 E-value=1.1e-06 Score=61.86 Aligned_cols=96 Identities=9% Similarity=0.023 Sum_probs=84.9
Q ss_pred cchhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcC---cCCcccHHHHHHH
Q 044786 10 TDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMP---LRDFNSWAVMIVG 86 (340)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~ 86 (340)
...+...-..+.+.|++++|++.|+...+. -+.+...|..+..++.+.|++++|++.|++.. ..+...|..+..+
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~ 90 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 346777888899999999999999999987 35578899999999999999999999999876 3356689999999
Q ss_pred HHcccChhHHHHHHHHHHHhh
Q 044786 87 YVDVADYQECITLFAEMMKRK 107 (340)
Q Consensus 87 ~~~~g~~~~a~~~~~~m~~~~ 107 (340)
+...|++++|++.|++.++..
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHCCCHHHHHHHHHHHHHHC
Confidence 999999999999999999983
No 134
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.60 E-value=7e-07 Score=62.74 Aligned_cols=92 Identities=8% Similarity=-0.043 Sum_probs=43.2
Q ss_pred HHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHH
Q 044786 80 WAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLI 159 (340)
Q Consensus 80 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 159 (340)
+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...++...+.... +...+..+.
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~ 87 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAIELN------PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcC------CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHH
Confidence 3444444445555555555555554442 223344444445555555555555555544444321 334444444
Q ss_pred HHHHhhcCHHHHHHHHHHc
Q 044786 160 NFYGKFRCLEDADFVFSQL 178 (340)
Q Consensus 160 ~~~~~~~~~~~a~~~~~~~ 178 (340)
..+...|++++|...|++.
T Consensus 88 ~~~~~~~~~~~A~~~~~~~ 106 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKA 106 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHH
Confidence 4555555555555555443
No 135
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.60 E-value=6.9e-07 Score=66.95 Aligned_cols=121 Identities=7% Similarity=0.017 Sum_probs=88.3
Q ss_pred hhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCc---CCcccHHHHHHH-HHcccCh--
Q 044786 20 CTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL---RDFNSWAVMIVG-YVDVADY-- 93 (340)
Q Consensus 20 ~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~-~~~~g~~-- 93 (340)
+...|++++|.+.++..... .+.+...+..+...+...|++++|...|++... .+...+..+... +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence 45678888888888888776 345677888888888888888888888887762 355566667777 6678887
Q ss_pred hHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCC
Q 044786 94 QECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGS 148 (340)
Q Consensus 94 ~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 148 (340)
++|...+++..+.. +.+...+..+...+...|++++|...++...+...
T Consensus 98 ~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 98 AQTRAMIDKALALD------SNEITALMLLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp HHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhC------CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 88888888888773 34456777778888888888888888888777653
No 136
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.59 E-value=9.2e-07 Score=67.66 Aligned_cols=154 Identities=10% Similarity=0.036 Sum_probs=83.5
Q ss_pred hccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHccc------C---ChhhHHHHHHHHhccCch
Q 044786 129 CTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR------H---NTVVWTAKIVNNCREGHF 199 (340)
Q Consensus 129 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~---~~~~~~~li~~~~~~~~~ 199 (340)
..|++++|.++++.+.. .......++..+...+...|++++|...+++..+ . ...++..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 45666666664443322 1122445555666666666666666666655432 1 223455555555555565
Q ss_pred hHHHHHHHHHhhcccCCChhhHHHHHHhcccCCchhchHHHHHHHHHHhCCC--ccHHHHHHHHHHHhccCCHHHHHHHH
Q 044786 200 HQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLE--SDEYVQCGLVDMYGKCRLLRDAERVF 277 (340)
Q Consensus 200 ~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~ 277 (340)
++|...+++..+. ....+-. .....+..+...+...|++++|...+
T Consensus 83 ~~A~~~~~~al~~--------------------------------~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 130 (203)
T 3gw4_A 83 DAARRCFLEEREL--------------------------------LASLPEDPLAASANAYEVATVALHFGDLAGARQEY 130 (203)
T ss_dssp HHHHHHHHHHHHH--------------------------------HHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHH--------------------------------HHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 5555555554331 0001101 12334556666777778888887777
Q ss_pred HHhhc----CCc----HHHHHHHHHHHHHcCchHHHHHHHHHHHHc
Q 044786 278 ELIVD----KKN----IASWNAMLVGYIRNGLYVEATKFLYLMKAS 315 (340)
Q Consensus 278 ~~~~~----~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 315 (340)
++... .++ ..++..+...+...|++++|.+.+++..+.
T Consensus 131 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 131 EKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 76653 122 234566777788888888888887776543
No 137
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.57 E-value=2.5e-06 Score=69.26 Aligned_cols=189 Identities=5% Similarity=-0.081 Sum_probs=110.0
Q ss_pred HHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHcccC---ChhhHHHHHHHH
Q 044786 117 AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH---NTVVWTAKIVNN 193 (340)
Q Consensus 117 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~ 193 (340)
...+..+...+.+.|++++|...|+...+.... +...|..+..+|.+.|++++|...+++..+. +...+..+..+|
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 445556666666677777777777766665432 5566677777777777777777777776542 455677777788
Q ss_pred hccCchhHHHHHHHHHhhcccCCCh-hhHHHHHHhcccCCchhchHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCHHH
Q 044786 194 CREGHFHQVFNDFKEMGRERIKKNS-YTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRD 272 (340)
Q Consensus 194 ~~~~~~~~a~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 272 (340)
...|++++|...|++..+.. |+. ..+...+....+.. -..-+........+.+......+-.. ..|+.++
T Consensus 83 ~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~ 153 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALRIA-----KKKRWNSIEERRIHQESELHSYLTRL--IAAERER 153 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHHH-----HHHHHHHHHHTCCCCCCHHHHHHHHH--HHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHHH-----HHHHHHHHHHHHHhhhHHHHHHHHHH--HHHHHHH
Confidence 88888888888887776532 221 01111111111100 11112222333444455554444332 2688899
Q ss_pred HHHHHHHhhc-CC-cHHHHHHHHHHHHHc-CchHHHHHHHHHHHHc
Q 044786 273 AERVFELIVD-KK-NIASWNAMLVGYIRN-GLYVEATKFLYLMKAS 315 (340)
Q Consensus 273 A~~~~~~~~~-~~-~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~ 315 (340)
|.+.++.... .| +......+-..+.+. +.+++|.++|++..+.
T Consensus 154 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 154 ELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9988887765 34 334444444444444 6688899999877543
No 138
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.55 E-value=5e-07 Score=67.71 Aligned_cols=118 Identities=5% Similarity=-0.002 Sum_probs=81.9
Q ss_pred HcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHH-HHhhc
Q 044786 88 VDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINF-YGKFR 166 (340)
Q Consensus 88 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~ 166 (340)
...|++++|+..+++..... +.+...+..+...+...|++++|...++...+.... +...+..+..+ +...|
T Consensus 21 ~~~~~~~~A~~~~~~al~~~------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~ 93 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN------PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQAS 93 (177)
T ss_dssp C-----CCCCHHHHHHHHHC------CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTT
T ss_pred hhccCHHHHHHHHHHHHHhC------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcC
Confidence 45677777777887777763 445567777777778888888888888777766533 45566666666 66777
Q ss_pred CH--HHHHHHHHHccc---CChhhHHHHHHHHhccCchhHHHHHHHHHhhc
Q 044786 167 CL--EDADFVFSQLKR---HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRE 212 (340)
Q Consensus 167 ~~--~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 212 (340)
++ ++|...|++..+ .+...+..+...|...|++++|...|++..+.
T Consensus 94 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 94 QHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp TCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 77 888888877653 24566777778888888888888888887764
No 139
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.54 E-value=6.3e-07 Score=65.22 Aligned_cols=122 Identities=10% Similarity=0.020 Sum_probs=91.8
Q ss_pred hhHHHHHHhhhccchhhHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhcCChhHHHHHHhhcCc---CCcccHHHHHHHH
Q 044786 12 MYTCLIKECTFQKDSAGAFELLNHIRKRVNIKP-TLLFLNRLLLMHVSCGQLDTARQLFDEMPL---RDFNSWAVMIVGY 87 (340)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~ 87 (340)
....+.+.+...+.+++++ .+.| +...+..+...+.+.|++++|.+.|++... .+...|..+..++
T Consensus 11 ~~~~l~~~~~~~~~l~~al----------~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~ 80 (151)
T 3gyz_A 11 ISTAVIDAINSGATLKDIN----------AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIY 80 (151)
T ss_dssp HHHHHHHHHHTSCCTGGGC----------CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHh----------CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3445555555444444432 3344 345677777888889999999999988772 3566788888889
Q ss_pred HcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCC
Q 044786 88 VDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSS 149 (340)
Q Consensus 88 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 149 (340)
...|++++|+..|++..... +-+...|..+..++.+.|++++|...|+...+....
T Consensus 81 ~~~g~~~~Ai~~~~~al~l~------P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 81 QIKEQFQQAADLYAVAFALG------KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSND 136 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHS------SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHccHHHHHHHHHHHHhhC------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999998884 456778888999999999999999999988888643
No 140
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.53 E-value=1.6e-06 Score=72.26 Aligned_cols=91 Identities=12% Similarity=-0.075 Sum_probs=43.8
Q ss_pred HHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHccc---CChhhHHHHHHHHh
Q 044786 118 WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR---HNTVVWTAKIVNNC 194 (340)
Q Consensus 118 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~ 194 (340)
..|..+..++.+.|++++|...++...+.... +...|..+..+|...|++++|...|++..+ .+...+..+..++.
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 44444555555555555555555555444322 344444555555555555555555554431 13344455555555
Q ss_pred ccCchhHH-HHHHHHH
Q 044786 195 REGHFHQV-FNDFKEM 209 (340)
Q Consensus 195 ~~~~~~~a-~~~~~~m 209 (340)
..|+.++| ..+|+.|
T Consensus 276 ~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 276 RIRRQLAREKKLYANM 291 (336)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 55555555 3344444
No 141
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.50 E-value=2.2e-06 Score=71.49 Aligned_cols=149 Identities=10% Similarity=0.024 Sum_probs=119.0
Q ss_pred hccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcC--cCC----------------cccHHHH
Q 044786 22 FQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMP--LRD----------------FNSWAVM 83 (340)
Q Consensus 22 ~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~--~~~----------------~~~~~~l 83 (340)
..+++++|.+.|+..... -+-+...+..+...+.+.|++++|...|++.. .|+ ..+|..+
T Consensus 125 ~L~~~~~A~~~~~~a~~~--~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nl 202 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEE--KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNL 202 (336)
T ss_dssp EEEEEECCCCGGGCCHHH--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHH--HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHH
Confidence 455677777666655433 12256788888889999999999999998876 233 3678889
Q ss_pred HHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 044786 84 IVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYG 163 (340)
Q Consensus 84 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 163 (340)
..++.+.|++++|+..+++.++.. +.+...+..+..++...|++++|...|+...+.... +...+..+..++.
T Consensus 203 a~~~~~~g~~~~A~~~~~~al~~~------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 203 AMCHLKLQAFSAAIESCNKALELD------SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence 999999999999999999999884 456778999999999999999999999999988865 6778888999999
Q ss_pred hhcCHHHH-HHHHHHcc
Q 044786 164 KFRCLEDA-DFVFSQLK 179 (340)
Q Consensus 164 ~~~~~~~a-~~~~~~~~ 179 (340)
+.|+.++| ...|+.|.
T Consensus 276 ~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999988 44666654
No 142
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.49 E-value=2.8e-06 Score=73.31 Aligned_cols=195 Identities=9% Similarity=0.006 Sum_probs=142.6
Q ss_pred HHHhhhccchhhHHHHHHHHHhhcCCCCC---------------HHHHHHHHHHHHhcCChhHHHHHHhhcCcC-----C
Q 044786 17 IKECTFQKDSAGAFELLNHIRKRVNIKPT---------------LLFLNRLLLMHVSCGQLDTARQLFDEMPLR-----D 76 (340)
Q Consensus 17 i~~~~~~~~~~~a~~~~~~m~~~~g~~~~---------------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~ 76 (340)
.+.+.+.|++++|++.|..+.+...-..+ ...+..+...|...|++++|.+.+....+. +
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 45567889999999999999876211111 134778899999999999999999887621 1
Q ss_pred c----ccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCC----
Q 044786 77 F----NSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGS---- 148 (340)
Q Consensus 77 ~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---- 148 (340)
. .+.+.+-..+...|+++.|.+++++.............-..++..+...+...|++++|..+++.+...-.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 12333444455678999999999988765311111133456888999999999999999999998765421
Q ss_pred CC-chhHHHHHHHHHHhhcCHHHHHHHHHHcccC-----C-----hhhHHHHHHHHhccCchhHHHHHHHHHhh
Q 044786 149 SR-NISLTGSLINFYGKFRCLEDADFVFSQLKRH-----N-----TVVWTAKIVNNCREGHFHQVFNDFKEMGR 211 (340)
Q Consensus 149 ~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 211 (340)
.+ ...++..++..|...|++++|..++++.... + ...+..+...+...|++++|...|.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11 2457888999999999999999999876421 1 24567777888889999999998888754
No 143
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.47 E-value=3.4e-07 Score=70.09 Aligned_cols=93 Identities=11% Similarity=-0.063 Sum_probs=47.6
Q ss_pred HHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHccc---CChhhHHHHHHHHh
Q 044786 118 WIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR---HNTVVWTAKIVNNC 194 (340)
Q Consensus 118 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~ 194 (340)
..+..+..++...|++++|...++...+... .+...+..+..+|...|++++|...|++..+ .+...+..+..++.
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 167 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDK-NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN 167 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Confidence 5555566666666666666666666655532 2445555666666666666666666665432 23445555555555
Q ss_pred ccCchhHHH-HHHHHHhh
Q 044786 195 REGHFHQVF-NDFKEMGR 211 (340)
Q Consensus 195 ~~~~~~~a~-~~~~~m~~ 211 (340)
..++.+++. ..|..|..
T Consensus 168 ~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 168 KLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHHHC-----------
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 555555555 44444443
No 144
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.46 E-value=8.7e-07 Score=64.36 Aligned_cols=94 Identities=11% Similarity=0.019 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHhhcC---cCCcccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHH
Q 044786 47 LFLNRLLLMHVSCGQLDTARQLFDEMP---LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCV 123 (340)
Q Consensus 47 ~~~~~li~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~l 123 (340)
..+..+...+.+.|++++|...|+... ..+...|..+..++...|++++|++.|++..... +.+...+..+
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~------p~~~~~~~~l 95 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD------IXEPRFPFHA 95 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------TTCTHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC------CCCchHHHHH
Confidence 344455555556666666666665544 2234445555555666666666666666665552 2334455555
Q ss_pred HHHhhhccchhhHHHHHHHHHHc
Q 044786 124 LKACVCTMNMELGKQVHGLLFKL 146 (340)
Q Consensus 124 l~~~~~~~~~~~a~~~~~~~~~~ 146 (340)
..++...|++++|.+.|+...+.
T Consensus 96 g~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 96 AECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 55566666666666666555544
No 145
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.45 E-value=3.4e-06 Score=59.11 Aligned_cols=95 Identities=9% Similarity=-0.015 Sum_probs=59.8
Q ss_pred cchhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCc---CCcccHHHHHHH
Q 044786 10 TDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL---RDFNSWAVMIVG 86 (340)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~ 86 (340)
...|......+.+.|++++|.+.|+...+. .+.+...|..+..++.+.|++++|++.|++..+ .+...|..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 345555666666777777777777776665 233556666666666666777776666666552 234456666666
Q ss_pred HHcccChhHHHHHHHHHHHh
Q 044786 87 YVDVADYQECITLFAEMMKR 106 (340)
Q Consensus 87 ~~~~g~~~~a~~~~~~m~~~ 106 (340)
+...|++++|.+.|++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 66666666666666666655
No 146
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.45 E-value=3.9e-07 Score=69.79 Aligned_cols=82 Identities=15% Similarity=0.017 Sum_probs=46.7
Q ss_pred hHHHHHHHHHHhhcCHHHHHHHHHHccc---CChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCC-hhhHHHHHHhc
Q 044786 153 SLTGSLINFYGKFRCLEDADFVFSQLKR---HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKN-SYTFSSVLKAC 228 (340)
Q Consensus 153 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~t~~~ll~~~ 228 (340)
..+..+..+|.+.|++++|...++...+ .+...+..+..+|...|++++|...|++..+. .|+ ...+..+...+
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHH
Confidence 4555566666666666666666666542 24455666666666666666666666666553 232 33444444444
Q ss_pred ccCCchhc
Q 044786 229 GGVDDDGN 236 (340)
Q Consensus 229 ~~~~~~~~ 236 (340)
...++..+
T Consensus 167 ~~~~~~~~ 174 (198)
T 2fbn_A 167 NKLKEARK 174 (198)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 44444444
No 147
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.44 E-value=1.3e-06 Score=63.36 Aligned_cols=92 Identities=9% Similarity=-0.132 Sum_probs=43.0
Q ss_pred HHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHccc---CChhhHHHHHHHHhc
Q 044786 119 IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR---HNTVVWTAKIVNNCR 195 (340)
Q Consensus 119 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~ 195 (340)
.+..+...+.+.|++++|...|+...+.... +...+..+..+|...|++++|...|++... .+...+..+..+|..
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~ 101 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQ 101 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 3344444444444444444444444443322 334444444444455555555555444331 133444555555555
Q ss_pred cCchhHHHHHHHHHhh
Q 044786 196 EGHFHQVFNDFKEMGR 211 (340)
Q Consensus 196 ~~~~~~a~~~~~~m~~ 211 (340)
.|++++|...|++..+
T Consensus 102 ~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 102 XGELAEAESGLFLAQE 117 (148)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555555544
No 148
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.44 E-value=1.8e-05 Score=63.31 Aligned_cols=114 Identities=11% Similarity=-0.029 Sum_probs=66.8
Q ss_pred cccChhHHHHHHHHHHHhhcCCccccchHHHHHHH-------HHHhhhccchhhHHHHHHHHHHcCCCCc----------
Q 044786 89 DVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCV-------LKACVCTMNMELGKQVHGLLFKLGSSRN---------- 151 (340)
Q Consensus 89 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~l-------l~~~~~~~~~~~a~~~~~~~~~~~~~~~---------- 151 (340)
..++...|.+.|.+..+.. +-....|..+ ...+.+.++..++...++.-.. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d------P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g 89 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD------ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGG 89 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCT
T ss_pred cCCCHHHHHHHHHHHHHhC------hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCC
Confidence 4677777777777777774 3334455555 3444444455554444443333 1111
Q ss_pred ------------hhHHHHHHHHHHhhcCHHHHHHHHHHccc--CChhhHHHHHHHHhccCchhHHHHHHHHHh
Q 044786 152 ------------ISLTGSLINFYGKFRCLEDADFVFSQLKR--HNTVVWTAKIVNNCREGHFHQVFNDFKEMG 210 (340)
Q Consensus 152 ------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 210 (340)
..........+...|++++|.++|+.+.. |+......+...+.+.+++++|+..|+...
T Consensus 90 ~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~ 162 (282)
T 4f3v_A 90 LYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAG 162 (282)
T ss_dssp TTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGG
T ss_pred cccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhh
Confidence 11233456667778888888888887753 322244455556777788888888876443
No 149
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.44 E-value=7.4e-05 Score=64.34 Aligned_cols=192 Identities=10% Similarity=-0.089 Sum_probs=135.5
Q ss_pred HHHHhcCChhHHHHHHhhcCcCCc--------------------ccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccc
Q 044786 54 LMHVSCGQLDTARQLFDEMPLRDF--------------------NSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLL 113 (340)
Q Consensus 54 ~~~~~~~~~~~a~~~~~~~~~~~~--------------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 113 (340)
..+.+.|++++|++.|..+.+.+. .++..+...|...|++++|.+.+.+..........-
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 446778999999999988763211 126778899999999999999999987753122000
Q ss_pred cchHHHHHHHHHHhhhccchhhHHHHHHHHHHc----CCCC-chhHHHHHHHHHHhhcCHHHHHHHHHHccc--------
Q 044786 114 VFPAWIIVCVLKACVCTMNMELGKQVHGLLFKL----GSSR-NISLTGSLINFYGKFRCLEDADFVFSQLKR-------- 180 (340)
Q Consensus 114 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------- 180 (340)
.....+.+.+-..+...|+++.+..+++..... +..+ -..++..+...|...|++++|..++++...
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 111224444555566678999999998876543 3222 245778899999999999999999988642
Q ss_pred C-ChhhHHHHHHHHhccCchhHHHHHHHHHhhc--cc-CC-C--hhhHHHHHHhcccCCchhchHHHHHHHH
Q 044786 181 H-NTVVWTAKIVNNCREGHFHQVFNDFKEMGRE--RI-KK-N--SYTFSSVLKACGGVDDDGNCGRQMHANI 245 (340)
Q Consensus 181 ~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~-~p-~--~~t~~~ll~~~~~~~~~~~~~~~~~~~~ 245 (340)
+ .+.++..++..|...|++++|..++++.... .+ .| . ...+..+...+...+++.++...+.+.+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 1 2457889999999999999999999887642 11 12 1 2446666777888999988555444443
No 150
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.44 E-value=1.8e-06 Score=69.03 Aligned_cols=184 Identities=4% Similarity=-0.156 Sum_probs=133.7
Q ss_pred hccchhhHHHHHHHHHhhcCCCCCHHHHHHH-------HHHHHhcCChhHHHHHHhhcCc--C-------C-cc------
Q 044786 22 FQKDSAGAFELLNHIRKRVNIKPTLLFLNRL-------LLMHVSCGQLDTARQLFDEMPL--R-------D-FN------ 78 (340)
Q Consensus 22 ~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l-------i~~~~~~~~~~~a~~~~~~~~~--~-------~-~~------ 78 (340)
..++...|.+.|...... -+-....|..+ ..++.+.++..++...+..-.. | + .-
T Consensus 18 ~~~d~~~A~~~F~~a~~~--dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNY--DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHh--ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccc
Confidence 578999999999999987 33356777777 4556665556666655554442 1 1 00
Q ss_pred --------cHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCC
Q 044786 79 --------SWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSR 150 (340)
Q Consensus 79 --------~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 150 (340)
.+-.+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..++...+.. .|
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~-------~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~ 167 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA-------GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DK 167 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT-------TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-------CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-Cc
Confidence 1234567788899999999999988765 3444466677778899999999999998554332 12
Q ss_pred c--hhHHHHHHHHHHhhcCHHHHHHHHHHcccCC------hhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCC
Q 044786 151 N--ISLTGSLINFYGKFRCLEDADFVFSQLKRHN------TVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKN 217 (340)
Q Consensus 151 ~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 217 (340)
. ...+..+..++...|++++|+..|++....+ .........++.+.|+.++|..+|+++... .|+
T Consensus 168 ~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~ 240 (282)
T 4f3v_A 168 FLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPE 240 (282)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCC
T ss_pred ccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc
Confidence 1 2367788899999999999999999885322 224566677888999999999999999885 466
No 151
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.40 E-value=2.5e-06 Score=59.86 Aligned_cols=94 Identities=12% Similarity=0.179 Sum_probs=50.7
Q ss_pred chhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCcC---C-------cccH
Q 044786 11 DMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLR---D-------FNSW 80 (340)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~-------~~~~ 80 (340)
..|..+...+...|+++.|...|+..... .+.+...+..+...+...|++++|...++..... + ..+|
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 34555555566666666666666666554 2334555555555555566666666555554411 1 2334
Q ss_pred HHHHHHHHcccChhHHHHHHHHHHHh
Q 044786 81 AVMIVGYVDVADYQECITLFAEMMKR 106 (340)
Q Consensus 81 ~~li~~~~~~g~~~~a~~~~~~m~~~ 106 (340)
..+...+...|++++|.+.|++..+.
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 44555555555555555555555554
No 152
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.39 E-value=6.5e-06 Score=57.92 Aligned_cols=99 Identities=9% Similarity=-0.036 Sum_probs=58.6
Q ss_pred HHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHcccC---C-------hhhHHH
Q 044786 119 IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH---N-------TVVWTA 188 (340)
Q Consensus 119 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~-------~~~~~~ 188 (340)
.+..+...+.+.|++++|...|+...+..+. +...|..+..+|.+.|++++|.+.|++..+- + ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 4455555566666666666666655555422 4455556666666666666666666554321 0 124566
Q ss_pred HHHHHhccCchhHHHHHHHHHhhcccCCChhh
Q 044786 189 KIVNNCREGHFHQVFNDFKEMGRERIKKNSYT 220 (340)
Q Consensus 189 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t 220 (340)
+..++...|++++|++.|++.... .||..+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~ 118 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE--FRDPEL 118 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--SCCHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--CcCHHH
Confidence 667777778888888888777653 455443
No 153
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.37 E-value=6.3e-06 Score=57.72 Aligned_cols=93 Identities=8% Similarity=-0.040 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHhhcC---cCCcccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHH
Q 044786 48 FLNRLLLMHVSCGQLDTARQLFDEMP---LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVL 124 (340)
Q Consensus 48 ~~~~li~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll 124 (340)
.+..+...+.+.|++++|.+.|++.. ..+...|..+..++.+.|++++|+..+++..+.. +.+...+..+.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~lg 79 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD------PNFVRAYIRKA 79 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------CCcHHHHHHHH
Confidence 44444455555555555555555543 1233445555555555555555555555555542 22344555555
Q ss_pred HHhhhccchhhHHHHHHHHHHc
Q 044786 125 KACVCTMNMELGKQVHGLLFKL 146 (340)
Q Consensus 125 ~~~~~~~~~~~a~~~~~~~~~~ 146 (340)
.++...|++++|...++...+.
T Consensus 80 ~~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 80 TAQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHHHh
Confidence 5555555555555555554443
No 154
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.37 E-value=1e-05 Score=55.41 Aligned_cols=20 Identities=20% Similarity=0.292 Sum_probs=7.6
Q ss_pred HHHHcccChhHHHHHHHHHH
Q 044786 85 VGYVDVADYQECITLFAEMM 104 (340)
Q Consensus 85 ~~~~~~g~~~~a~~~~~~m~ 104 (340)
..+...|++++|...+++..
T Consensus 46 ~~~~~~~~~~~A~~~~~~~~ 65 (118)
T 1elw_A 46 AAYAKKGDYQKAYEDGCKTV 65 (118)
T ss_dssp HHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHH
Confidence 33333333333333333333
No 155
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.36 E-value=7.7e-06 Score=58.08 Aligned_cols=96 Identities=8% Similarity=-0.012 Sum_probs=61.7
Q ss_pred CcchhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCc---CCcccHHHHHH
Q 044786 9 TTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL---RDFNSWAVMIV 85 (340)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~ 85 (340)
++..|..+...+...|++++|...|+..... .+.+...+..+..++...|++++|...|+.... .+...|..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 4555666666667777777777777776665 233456666666666677777777766666552 23445666666
Q ss_pred HHHcccChhHHHHHHHHHHHh
Q 044786 86 GYVDVADYQECITLFAEMMKR 106 (340)
Q Consensus 86 ~~~~~g~~~~a~~~~~~m~~~ 106 (340)
.+...|++++|...|++..+.
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHH
Confidence 666667777777777666655
No 156
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.36 E-value=0.0007 Score=55.97 Aligned_cols=217 Identities=6% Similarity=-0.096 Sum_probs=122.0
Q ss_pred cccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhcc-chhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhh-c
Q 044786 89 DVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTM-NMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF-R 166 (340)
Q Consensus 89 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~ 166 (340)
+....++|++++++++..+ +-+..+|+.--..+...| .+++++++++.+.....+ +..+|+--.-.+.+. +
T Consensus 66 ~~e~se~AL~lt~~~L~~n------P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~ 138 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMN------PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISP 138 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCC
T ss_pred hCCCCHHHHHHHHHHHHhC------chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcC
Confidence 3444566777777777763 333445555555555556 477777777777766544 555555544444444 5
Q ss_pred -CHHHHHHHHHHcccC---ChhhHHHHHHHHhccCchh--------HHHHHHHHHhhcccCCChhhHHHHHHhcccCCc-
Q 044786 167 -CLEDADFVFSQLKRH---NTVVWTAKIVNNCREGHFH--------QVFNDFKEMGRERIKKNSYTFSSVLKACGGVDD- 233 (340)
Q Consensus 167 -~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~--------~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~- 233 (340)
+++++.++++.+.+. |..+|+.-.-.+.+.|.++ ++++.++++.+.. .-|...|+.--..+.+.+.
T Consensus 139 ~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~ 217 (349)
T 3q7a_A 139 QDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGA 217 (349)
T ss_dssp SCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTC
T ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcccc
Confidence 667777777777654 4445555444444445555 7777777777653 2244555554444444443
Q ss_pred ------hhchHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCH--------------------HHHHHHHHHhhc-----
Q 044786 234 ------DGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLL--------------------RDAERVFELIVD----- 282 (340)
Q Consensus 234 ------~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~--------------------~~A~~~~~~~~~----- 282 (340)
+++ +........... +-|...|+-+-..+.+.|+. ....++..++..
T Consensus 218 ~~~~~~~~e-ELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (349)
T 3q7a_A 218 ETSSRSLQD-ELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPE 295 (349)
T ss_dssp CCCHHHHHH-HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCS
T ss_pred ccchHHHHH-HHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccccc
Confidence 222 333333333321 23556665555555544432 233333333322
Q ss_pred ---CCcHHHHHHHHHHHHHcCchHHHHHHHHHHHHc
Q 044786 283 ---KKNIASWNAMLVGYIRNGLYVEATKFLYLMKAS 315 (340)
Q Consensus 283 ---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 315 (340)
.+++..+..|...|...|+.++|.++++.+.++
T Consensus 296 ~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 296 DTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp SCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 146677788888888889999999999988544
No 157
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.35 E-value=4.6e-06 Score=56.66 Aligned_cols=96 Identities=7% Similarity=-0.083 Sum_probs=64.0
Q ss_pred CcchhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCc---C--CcccHHHH
Q 044786 9 TTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL---R--DFNSWAVM 83 (340)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~--~~~~~~~l 83 (340)
+...+..+...+.+.|++++|...++...+. .+.+...+..+...+...|++++|.+.|++..+ . +...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence 4566677777777788888888888877766 233556666666677777777777777666542 2 33456666
Q ss_pred HHHHHcc-cChhHHHHHHHHHHHh
Q 044786 84 IVGYVDV-ADYQECITLFAEMMKR 106 (340)
Q Consensus 84 i~~~~~~-g~~~~a~~~~~~m~~~ 106 (340)
...+... |++++|.+.+++....
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhc
Confidence 6666666 7777777776666655
No 158
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.35 E-value=6.2e-05 Score=62.24 Aligned_cols=231 Identities=12% Similarity=0.010 Sum_probs=108.9
Q ss_pred cchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHhhcCcCCc---ccHHHHHHHHHcc-c-ChhHHH
Q 044786 24 KDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCG-QLDTARQLFDEMPLRDF---NSWAVMIVGYVDV-A-DYQECI 97 (340)
Q Consensus 24 ~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~-g-~~~~a~ 97 (340)
...++|+++++.+... -+-+..+|+.--..+...| .+++++++++.+...++ .+|+.-...+.+. + ++++++
T Consensus 68 e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 68 EKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHH
Confidence 3445666666666655 2334455555555555555 36666666666653332 3444444444443 4 566666
Q ss_pred HHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchh--------hHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcC--
Q 044786 98 TLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNME--------LGKQVHGLLFKLGSSRNISLTGSLINFYGKFRC-- 167 (340)
Q Consensus 98 ~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-- 167 (340)
++++++.+.. +-+...|+.-.-...+.|.++ ++++.++.+.+..+. |...|+.....+.+.++
T Consensus 146 ~~~~k~L~~d------pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~ 218 (349)
T 3q7a_A 146 EYIHGSLLPD------PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAE 218 (349)
T ss_dssp HHHHHHTSSC------TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCC
T ss_pred HHHHHHHHhC------CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccc
Confidence 6666666553 344445554444444444444 555555555554433 44444444444444333
Q ss_pred -----HHHHHHHHHHccc---CChhhHHHHHHHHhccCchhH--HHHHHHHHhhcc--cCCChhhHHHHHHhcccCCchh
Q 044786 168 -----LEDADFVFSQLKR---HNTVVWTAKIVNNCREGHFHQ--VFNDFKEMGRER--IKKNSYTFSSVLKACGGVDDDG 235 (340)
Q Consensus 168 -----~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~--a~~~~~~m~~~~--~~p~~~t~~~ll~~~~~~~~~~ 235 (340)
++++.+.+++... .|...|+-+-..+.+.|+... -..+ -...| +.|+ ..
T Consensus 219 ~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~---~~~~~~~~~~~----------------~~ 279 (349)
T 3q7a_A 219 TSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAI---LPYTASKLNPD----------------IE 279 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHH---GGGTC------------------------
T ss_pred cchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccc---ccccccccccc----------------ch
Confidence 3334444333321 133333333222222222100 0000 00000 0000 00
Q ss_pred chHHHHHHHHHHh-----CCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhcC
Q 044786 236 NCGRQMHANIVKI-----GLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK 283 (340)
Q Consensus 236 ~~~~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 283 (340)
+ ...+...+... .-.+++.....|.+.|...|+.++|.++++.+..+
T Consensus 280 ~-~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 280 T-VEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp -------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred h-HHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 0 11111111111 11357788899999999999999999999999754
No 159
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.34 E-value=7.6e-06 Score=56.10 Aligned_cols=96 Identities=7% Similarity=-0.078 Sum_probs=83.4
Q ss_pred CcchhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCc---CCcccHHHHHH
Q 044786 9 TTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL---RDFNSWAVMIV 85 (340)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~ 85 (340)
.+..+..+...+...|++++|.+.|+..... .+.+...+..+...+.+.|++++|...+++... .+...+..+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 4567788888999999999999999999987 345788899999999999999999999998763 34567888889
Q ss_pred HHHcccChhHHHHHHHHHHHh
Q 044786 86 GYVDVADYQECITLFAEMMKR 106 (340)
Q Consensus 86 ~~~~~g~~~~a~~~~~~m~~~ 106 (340)
.+...|++++|.+.+++..+.
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHhhHHHHHHHHHHHHHc
Confidence 999999999999999999877
No 160
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.34 E-value=4e-06 Score=60.25 Aligned_cols=91 Identities=10% Similarity=-0.095 Sum_probs=47.8
Q ss_pred HHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcC---cCCcccHHHHHHHHHcc
Q 044786 14 TCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMP---LRDFNSWAVMIVGYVDV 90 (340)
Q Consensus 14 ~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~ 90 (340)
..+...+.+.|++++|.+.|+..... -+.+...|..+..++.+.|++++|...|+... ..+...|..+..++...
T Consensus 22 ~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 99 (142)
T 2xcb_A 22 YALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQL 99 (142)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 33444455555555555555555544 22344555555555555555555555555544 12333455555555555
Q ss_pred cChhHHHHHHHHHHHh
Q 044786 91 ADYQECITLFAEMMKR 106 (340)
Q Consensus 91 g~~~~a~~~~~~m~~~ 106 (340)
|++++|.+.|++..+.
T Consensus 100 g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 100 GDLDGAESGFYSARAL 115 (142)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh
Confidence 5555555555555544
No 161
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.34 E-value=7.5e-06 Score=57.05 Aligned_cols=94 Identities=9% Similarity=-0.096 Sum_probs=58.7
Q ss_pred cHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHH
Q 044786 79 SWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158 (340)
Q Consensus 79 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 158 (340)
.+..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...++...+.... +...+..+
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~l 91 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE------PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAAL 91 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 34445556666777777777777776663 335556666666666667777777776666665433 44455566
Q ss_pred HHHHHhhcCHHHHHHHHHHcc
Q 044786 159 INFYGKFRCLEDADFVFSQLK 179 (340)
Q Consensus 159 ~~~~~~~~~~~~a~~~~~~~~ 179 (340)
..+|...|++++|...|++..
T Consensus 92 a~~~~~~g~~~~A~~~~~~al 112 (121)
T 1hxi_A 92 AVSHTNEHNANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 666666666666666666544
No 162
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.34 E-value=8.2e-06 Score=55.38 Aligned_cols=95 Identities=13% Similarity=0.016 Sum_probs=46.0
Q ss_pred cccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCC-CchhHH
Q 044786 77 FNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSS-RNISLT 155 (340)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~ 155 (340)
...|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|.+.++...+.... .+...+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 79 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD------PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVW 79 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC------cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHH
Confidence 3345555555666666666666666665552 233444555555555555555555555555444211 023333
Q ss_pred HHHHHHHHhh-cCHHHHHHHHHH
Q 044786 156 GSLINFYGKF-RCLEDADFVFSQ 177 (340)
Q Consensus 156 ~~l~~~~~~~-~~~~~a~~~~~~ 177 (340)
..+...+.+. |++++|.+.++.
T Consensus 80 ~~l~~~~~~~~~~~~~A~~~~~~ 102 (112)
T 2kck_A 80 AAKADALRYIEGKEVEAEIAEAR 102 (112)
T ss_dssp HHHHHHHTTCSSCSHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHH
Confidence 3344444444 444444444433
No 163
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.34 E-value=9e-06 Score=59.96 Aligned_cols=97 Identities=13% Similarity=0.197 Sum_probs=72.9
Q ss_pred CcchhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCc---CCcccHHHHHH
Q 044786 9 TTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL---RDFNSWAVMIV 85 (340)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~ 85 (340)
+...|..+...+.+.|++++|++.|+...+. .+.+...|..+..+|.+.|++++|+..|++... .+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3556677777778888888888888888776 344677777888888888888888888877662 34556777777
Q ss_pred HHHcccChhHHHHHHHHHHHhh
Q 044786 86 GYVDVADYQECITLFAEMMKRK 107 (340)
Q Consensus 86 ~~~~~g~~~~a~~~~~~m~~~~ 107 (340)
.+...|++++|.+.|++..+..
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC
Confidence 8888888888888888887774
No 164
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.34 E-value=5.2e-06 Score=60.55 Aligned_cols=132 Identities=9% Similarity=-0.092 Sum_probs=72.1
Q ss_pred HHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCC----C-chhH
Q 044786 80 WAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSS----R-NISL 154 (340)
Q Consensus 80 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~-~~~~ 154 (340)
+..+...+...|++++|++.+++..+.............++..+...+...|++++|...++...+.... + ....
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 4445555556666666666666555442000000111135555666666666666666666655432110 0 1334
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHcccC---------ChhhHHHHHHHHhccCchhHHHHHHHHHhh
Q 044786 155 TGSLINFYGKFRCLEDADFVFSQLKRH---------NTVVWTAKIVNNCREGHFHQVFNDFKEMGR 211 (340)
Q Consensus 155 ~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 211 (340)
+..+...+...|++++|.+.+++..+. ...++..+...+...|++++|...+++..+
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 555666666777777776666654321 123466667777777888888777777654
No 165
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.33 E-value=5.8e-06 Score=59.39 Aligned_cols=88 Identities=8% Similarity=-0.027 Sum_probs=39.1
Q ss_pred HHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 044786 83 MIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFY 162 (340)
Q Consensus 83 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 162 (340)
+...+.+.|++++|+..|++..... +.+...|..+..++...|++++|...|+...+.... +...+..+..+|
T Consensus 24 ~a~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 96 (142)
T 2xcb_A 24 LGFNQYQAGKWDDAQKIFQALCMLD------HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHH
T ss_pred HHHHHHHHccHHHHHHHHHHHHHhC------CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHH
Confidence 3344444555555555555554442 223334444444444444444444444444444322 233333444444
Q ss_pred HhhcCHHHHHHHHHH
Q 044786 163 GKFRCLEDADFVFSQ 177 (340)
Q Consensus 163 ~~~~~~~~a~~~~~~ 177 (340)
...|++++|...|+.
T Consensus 97 ~~~g~~~~A~~~~~~ 111 (142)
T 2xcb_A 97 LQLGDLDGAESGFYS 111 (142)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHH
Confidence 444444444444443
No 166
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.33 E-value=6.4e-06 Score=57.95 Aligned_cols=100 Identities=10% Similarity=0.022 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHhhcC---cCCcccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCc-cccchHHHHHHH
Q 044786 48 FLNRLLLMHVSCGQLDTARQLFDEMP---LRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM-LLVFPAWIIVCV 123 (340)
Q Consensus 48 ~~~~li~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~l 123 (340)
.+..+...+.+.|++++|++.|++.. ..+...|+.+..+|...|++++|++.+++.++...... ....-..+|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 34444455555555555555555443 12333455555555555555555555555554420000 000012345555
Q ss_pred HHHhhhccchhhHHHHHHHHHHcC
Q 044786 124 LKACVCTMNMELGKQVHGLLFKLG 147 (340)
Q Consensus 124 l~~~~~~~~~~~a~~~~~~~~~~~ 147 (340)
..++...|++++|.+.|+..++..
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~~~ 113 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLSEF 113 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC
Confidence 555555555555555555555543
No 167
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.30 E-value=1.4e-05 Score=56.78 Aligned_cols=92 Identities=5% Similarity=-0.143 Sum_probs=37.8
Q ss_pred HHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHccc---CChhhHHHHHHHHhc
Q 044786 119 IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR---HNTVVWTAKIVNNCR 195 (340)
Q Consensus 119 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~ 195 (340)
.+..+...+...|++++|...|+...+.... +...+..+..+|...|++++|...++...+ .+...|..+..++..
T Consensus 11 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 89 (137)
T 3q49_B 11 ELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE 89 (137)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 3333334444444444444444433333211 233334444444444444444444443321 123344444444444
Q ss_pred cCchhHHHHHHHHHhh
Q 044786 196 EGHFHQVFNDFKEMGR 211 (340)
Q Consensus 196 ~~~~~~a~~~~~~m~~ 211 (340)
.|++++|...|++..+
T Consensus 90 ~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 90 MESYDEAIANLQRAYS 105 (137)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHH
Confidence 4555555544444443
No 168
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.29 E-value=1.1e-05 Score=59.46 Aligned_cols=94 Identities=9% Similarity=-0.067 Sum_probs=54.0
Q ss_pred cHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHH
Q 044786 79 SWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158 (340)
Q Consensus 79 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 158 (340)
.|..+...+...|++++|++.|++..+.. +.+...|..+..++.+.|++++|...++...+.... +...|..+
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 85 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIA------PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRL 85 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 34445555556666666666666665552 234455555566666666666666666665555432 45555566
Q ss_pred HHHHHhhcCHHHHHHHHHHcc
Q 044786 159 INFYGKFRCLEDADFVFSQLK 179 (340)
Q Consensus 159 ~~~~~~~~~~~~a~~~~~~~~ 179 (340)
..+|...|++++|...|++..
T Consensus 86 g~~~~~~g~~~~A~~~~~~al 106 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGI 106 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHH
Confidence 666666666666666666554
No 169
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.28 E-value=1.1e-05 Score=56.50 Aligned_cols=108 Identities=12% Similarity=0.035 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHhhcCc---CCcccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccch----HH
Q 044786 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPL---RDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP----AW 118 (340)
Q Consensus 46 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~----~~ 118 (340)
...+..+...+...|++++|...|+.... .+...+..+...+...|++++|...+++........ .++ ..
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~ 80 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN---REDYRQIAK 80 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS---TTCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc---chhHHHHHH
Confidence 45666777778888888888888887652 344567777778888888888888888887763100 111 56
Q ss_pred HHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHH
Q 044786 119 IIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158 (340)
Q Consensus 119 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 158 (340)
++..+...+...|++++|.+.++...+.. |+......+
T Consensus 81 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l 118 (131)
T 1elr_A 81 AYARIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKC 118 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHH
Confidence 77777777888888888888888777764 344444333
No 170
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.27 E-value=1.9e-05 Score=56.72 Aligned_cols=94 Identities=10% Similarity=-0.011 Sum_probs=54.9
Q ss_pred cchhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCC----HHHHHHHHHHHHhcCChhHHHHHHhhcCc---CCcccHHH
Q 044786 10 TDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPT----LLFLNRLLLMHVSCGQLDTARQLFDEMPL---RDFNSWAV 82 (340)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~ 82 (340)
...+..+...+...|++++|.+.|+...+. .|+ ...+..+...+...|++++|.+.++...+ .+...|..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGL---DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 444555666666666677776666666643 344 45555555666666666666666655441 23334555
Q ss_pred HHHHHHcccChhHHHHHHHHHHHh
Q 044786 83 MIVGYVDVADYQECITLFAEMMKR 106 (340)
Q Consensus 83 li~~~~~~g~~~~a~~~~~~m~~~ 106 (340)
+...+...|++++|.+.|++....
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Confidence 555666666666666666666555
No 171
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.25 E-value=0.00056 Score=60.04 Aligned_cols=196 Identities=7% Similarity=-0.107 Sum_probs=112.2
Q ss_pred CCcchhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHhhcCc------CCcccH
Q 044786 8 ITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQ-LDTARQLFDEMPL------RDFNSW 80 (340)
Q Consensus 8 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~------~~~~~~ 80 (340)
--...|...+..+-. |+++.+.++|+..... .|+...|...+....+.++ .+....+|+.... .+...|
T Consensus 13 ~aR~vyer~l~~~P~-~~~e~~~~iferal~~---~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW 88 (493)
T 2uy1_A 13 SPSAIMEHARRLYMS-KDYRSLESLFGRCLKK---SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLY 88 (493)
T ss_dssp CHHHHHHHHHHHHHT-TCHHHHHHHHHHHSTT---CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHH
T ss_pred HHHHHHHHHHHHCCC-CCHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHH
Confidence 334567777777755 7899999999998865 4788888888887777663 4556666766442 244567
Q ss_pred HHHHHHHHc----ccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhh-------------ccchhhHHHHHHHH
Q 044786 81 AVMIVGYVD----VADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVC-------------TMNMELGKQVHGLL 143 (340)
Q Consensus 81 ~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~-------------~~~~~~a~~~~~~~ 143 (340)
...+..+.. .++.+.+.++|++.+.. .. ..-...|......-.. .+.+..|..+++.+
T Consensus 89 ~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~--P~---~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~ 163 (493)
T 2uy1_A 89 KEYIEEEGKIEDEQTRIEKIRNGYMRALQT--PM---GSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQI 163 (493)
T ss_dssp HHHHHHTSSCSSHHHHHHHHHHHHHHHHTS--CC---TTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhchhhhHHHHHHHHHHHHHHhC--hh---hhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHH
Confidence 777766553 46778888888888864 11 1122233322221110 11222333333333
Q ss_pred HHcCCCCchhHHHHHHHHHHhhc-------CHHHHHHHHHHccc---CChhhHHHHHHHHhccCchhHHHHHHHHHhhc
Q 044786 144 FKLGSSRNISLTGSLINFYGKFR-------CLEDADFVFSQLKR---HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRE 212 (340)
Q Consensus 144 ~~~~~~~~~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 212 (340)
...-...+...|...+..-...+ ..+.+..+|++... .....|-..+.-+.+.|++++|..++++....
T Consensus 164 ~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~ 242 (493)
T 2uy1_A 164 QPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM 242 (493)
T ss_dssp HHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 32100012234444333321110 02345567777653 24556777777777888899999999888876
No 172
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.25 E-value=3e-05 Score=55.61 Aligned_cols=96 Identities=9% Similarity=-0.056 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHhhcCc--CC----cccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHH
Q 044786 45 TLLFLNRLLLMHVSCGQLDTARQLFDEMPL--RD----FNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAW 118 (340)
Q Consensus 45 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ 118 (340)
+...+..+...+.+.|++++|.+.|++..+ |+ ...|..+...+...|++++|++.+++..+.. +.+..
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------~~~~~ 100 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD------GGDVK 100 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT------SCCHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC------ccCHH
Confidence 344555555555556666666666555442 22 2334445555555555555555555555542 22344
Q ss_pred HHHHHHHHhhhccchhhHHHHHHHHHHc
Q 044786 119 IIVCVLKACVCTMNMELGKQVHGLLFKL 146 (340)
Q Consensus 119 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 146 (340)
.+..+..++...|++++|.+.++...+.
T Consensus 101 ~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 101 ALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 4555555555555555555555555544
No 173
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.24 E-value=9.3e-06 Score=59.19 Aligned_cols=95 Identities=14% Similarity=0.078 Sum_probs=50.3
Q ss_pred hhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCC----HHHHHHHHHHHHhcCChhHHHHHHhhcCc-----CC----cc
Q 044786 12 MYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPT----LLFLNRLLLMHVSCGQLDTARQLFDEMPL-----RD----FN 78 (340)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~----~~ 78 (340)
++..+...+...|++++|.+.++.......-.++ ..++..+...+...|++++|.+.++.... ++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4555666666667777777777666543100011 13455555666666666666666655431 11 12
Q ss_pred cHHHHHHHHHcccChhHHHHHHHHHHHh
Q 044786 79 SWAVMIVGYVDVADYQECITLFAEMMKR 106 (340)
Q Consensus 79 ~~~~li~~~~~~g~~~~a~~~~~~m~~~ 106 (340)
++..+...+...|++++|.+.+++....
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 118 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAI 118 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3444555555556666666655555443
No 174
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.16 E-value=2.4e-06 Score=74.84 Aligned_cols=123 Identities=7% Similarity=-0.013 Sum_probs=93.8
Q ss_pred chhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCc---CCcccHHHHHHHH
Q 044786 11 DMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL---RDFNSWAVMIVGY 87 (340)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~ 87 (340)
..+..+...+.+.|++++|.+.|++..+. .+.+...|..+..++.+.|++++|++.+++..+ .+..+|..+..+|
T Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 84 (477)
T 1wao_1 7 EELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 84 (477)
T ss_dssp TTSSSSSSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34445556677889999999999999987 344688999999999999999999999998763 3455788889999
Q ss_pred HcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHH--hhhccchhhHHHHHH
Q 044786 88 VDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKA--CVCTMNMELGKQVHG 141 (340)
Q Consensus 88 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~ 141 (340)
...|++++|++.|++..+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 85 ~~~g~~~eA~~~~~~al~~~------p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 85 MALGKFRAALRDYETVVKVK------PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHTCHHHHHHHHHHHHHHS------TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999883 2233344444444 788899999999887
No 175
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.14 E-value=1.6e-05 Score=55.27 Aligned_cols=86 Identities=8% Similarity=-0.018 Sum_probs=39.5
Q ss_pred HHHHhcCChhHHHHHHhhcCc--C-CcccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhc
Q 044786 54 LMHVSCGQLDTARQLFDEMPL--R-DFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCT 130 (340)
Q Consensus 54 ~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~ 130 (340)
..+.+.|++++|...|++..+ | +...|..+..++...|++++|+..|++..+.. +-+...+..+..++...
T Consensus 25 ~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~------P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 25 LSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD------PKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHc
Confidence 334444444444444444431 1 23334444444445555555555555554442 22333444444555555
Q ss_pred cchhhHHHHHHHHHH
Q 044786 131 MNMELGKQVHGLLFK 145 (340)
Q Consensus 131 ~~~~~a~~~~~~~~~ 145 (340)
|++++|...++...+
T Consensus 99 g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 99 HNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555554443
No 176
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.14 E-value=3.4e-05 Score=67.17 Aligned_cols=119 Identities=8% Similarity=0.038 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHhhcCc--C-C---------------cccHHHHHHHHHcccChhHHHHHHHHHHHhh
Q 044786 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPL--R-D---------------FNSWAVMIVGYVDVADYQECITLFAEMMKRK 107 (340)
Q Consensus 46 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~---------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 107 (340)
...+..+...+.+.|++++|...|++..+ | + ...|..+..+|.+.|++++|+..+++.++..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 34556666666677777777777666542 2 2 2344445555555555555555555555442
Q ss_pred cCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHH
Q 044786 108 KGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDA 171 (340)
Q Consensus 108 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 171 (340)
+.+...|..+..++...|++++|...|+...+.... +...+..+..++.+.++.+++
T Consensus 348 ------p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 348 ------SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp ------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHH
T ss_pred ------CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 233444444555555555555555555544443321 233444444444444444433
No 177
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.13 E-value=8.9e-06 Score=71.20 Aligned_cols=115 Identities=10% Similarity=-0.025 Sum_probs=73.8
Q ss_pred HHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhh
Q 044786 86 GYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165 (340)
Q Consensus 86 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 165 (340)
.+.+.|++++|++.|++..+.. +.+..++..+..++.+.|++++|.+.+++..+.... +...+..+..+|...
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~ 87 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN------PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMAL 87 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 4456677777777777777763 334667777777777777777777777777766533 556677777777777
Q ss_pred cCHHHHHHHHHHccc--C-ChhhHHHHHHH--HhccCchhHHHHHHH
Q 044786 166 RCLEDADFVFSQLKR--H-NTVVWTAKIVN--NCREGHFHQVFNDFK 207 (340)
Q Consensus 166 ~~~~~a~~~~~~~~~--~-~~~~~~~li~~--~~~~~~~~~a~~~~~ 207 (340)
|++++|.+.|++..+ | +...+..+..+ +.+.|++++|++.++
T Consensus 88 g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 88 GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp TCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 777777777777543 2 33445555444 666777777777776
No 178
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.13 E-value=4.7e-05 Score=66.31 Aligned_cols=127 Identities=8% Similarity=-0.067 Sum_probs=96.8
Q ss_pred cccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccch---------------HHHHHHHHHHhhhccchhhHHHHHH
Q 044786 77 FNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP---------------AWIIVCVLKACVCTMNMELGKQVHG 141 (340)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~---------------~~~~~~ll~~~~~~~~~~~a~~~~~ 141 (340)
...|..+...+.+.|++++|+..|++..+.. +.+ ...|..+..++.+.|++++|...++
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~------p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~ 341 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL------EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCD 341 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH------TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh------cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 3467788889999999999999999999874 222 4778888888888888999888888
Q ss_pred HHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHcccC---ChhhHHHHHHHHhccCchhHHH-HHHHHHh
Q 044786 142 LLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH---NTVVWTAKIVNNCREGHFHQVF-NDFKEMG 210 (340)
Q Consensus 142 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~-~~~~~m~ 210 (340)
...+.... +...|..+..+|...|++++|...|++..+. +...+..+..++...++.+++. .+++.|.
T Consensus 342 ~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 342 KALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887643 6677888888888888888888888887643 4556777777777777777665 3455554
No 179
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.10 E-value=5.6e-05 Score=52.84 Aligned_cols=91 Identities=8% Similarity=-0.047 Sum_probs=52.0
Q ss_pred HHHHHHhhhccchhhHHHHHHHHHhhcCCCCCH---HHHHHHHHHHHhcCChhHHHHHHhhcCc--CC----cccHHHHH
Q 044786 14 TCLIKECTFQKDSAGAFELLNHIRKRVNIKPTL---LFLNRLLLMHVSCGQLDTARQLFDEMPL--RD----FNSWAVMI 84 (340)
Q Consensus 14 ~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~----~~~~~~li 84 (340)
..+...+...|++++|.+.|+...+. .+.+. ..+..+..++.+.|++++|...|+.... |+ ..++..+.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLEL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 33445556666777777777766654 11122 3555555666666666666666665542 22 22355555
Q ss_pred HHHHcccChhHHHHHHHHHHHh
Q 044786 85 VGYVDVADYQECITLFAEMMKR 106 (340)
Q Consensus 85 ~~~~~~g~~~~a~~~~~~m~~~ 106 (340)
.++...|++++|...|++....
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 5666666666666666666655
No 180
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.09 E-value=5.8e-05 Score=52.78 Aligned_cols=95 Identities=12% Similarity=0.018 Sum_probs=47.5
Q ss_pred HHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCc--hhHHHHH
Q 044786 81 AVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRN--ISLTGSL 158 (340)
Q Consensus 81 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l 158 (340)
..+...+...|++++|.+.|++..+..... ......+..+..++...|++++|...++...+...... ...+..+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNG---VYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSS---TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCC---cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 334455666667777777777666652000 11113555555566666666666666666555432211 2333444
Q ss_pred HHHHHhhcCHHHHHHHHHHc
Q 044786 159 INFYGKFRCLEDADFVFSQL 178 (340)
Q Consensus 159 ~~~~~~~~~~~~a~~~~~~~ 178 (340)
..+|...|++++|...|+.+
T Consensus 83 a~~~~~~g~~~~A~~~~~~~ 102 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQV 102 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 44444444444444444443
No 181
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.06 E-value=1.1e-05 Score=55.72 Aligned_cols=85 Identities=9% Similarity=0.016 Sum_probs=57.1
Q ss_pred hccchhhHHHHHHHHHhhcC--CCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCc---CCcccHHHHHHHHHcccChhHH
Q 044786 22 FQKDSAGAFELLNHIRKRVN--IKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL---RDFNSWAVMIVGYVDVADYQEC 96 (340)
Q Consensus 22 ~~~~~~~a~~~~~~m~~~~g--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a 96 (340)
..|++++|+..|+...+. + -+.+...+..+..++.+.|++++|.+.|++..+ .+...+..+..++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHH
Confidence 357788888888887765 3 133456677777777888888888888877652 2445677777777788888888
Q ss_pred HHHHHHHHHhh
Q 044786 97 ITLFAEMMKRK 107 (340)
Q Consensus 97 ~~~~~~m~~~~ 107 (340)
+..+++.....
T Consensus 81 ~~~~~~al~~~ 91 (117)
T 3k9i_A 81 VELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 88888777763
No 182
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.03 E-value=4.4e-05 Score=63.64 Aligned_cols=92 Identities=4% Similarity=-0.064 Sum_probs=50.6
Q ss_pred cHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHH------------------HHHHHHHHhhhccchhhHHHHH
Q 044786 79 SWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAW------------------IIVCVLKACVCTMNMELGKQVH 140 (340)
Q Consensus 79 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~------------------~~~~ll~~~~~~~~~~~a~~~~ 140 (340)
.+..+...+.+.|++++|+..|++.... .|+.. .|..+..++.+.|++++|...+
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~-------~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~ 253 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY-------MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHC 253 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH-------SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH-------hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3666777788889999999999998877 45443 3344444444444444444444
Q ss_pred HHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHc
Q 044786 141 GLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL 178 (340)
Q Consensus 141 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 178 (340)
+...+.... +...|..+..+|...|++++|...|++.
T Consensus 254 ~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~a 290 (338)
T 2if4_A 254 NIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKA 290 (338)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444443211 3334444444444444444444444443
No 183
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.01 E-value=6.1e-05 Score=65.76 Aligned_cols=126 Identities=7% Similarity=-0.081 Sum_probs=87.1
Q ss_pred HHHcccChhHHHHHHHHHHHhhcCCc-cccc-hHHHHHHHHHHhhhccchhhHHHHHHHHHHc-----CC-CC-chhHHH
Q 044786 86 GYVDVADYQECITLFAEMMKRKKGHM-LLVF-PAWIIVCVLKACVCTMNMELGKQVHGLLFKL-----GS-SR-NISLTG 156 (340)
Q Consensus 86 ~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~-~~~~~~ 156 (340)
.+...|++++|+.++++.++....+. ...| ...+++.|..+|...|++++|..++++.++. |. .| ...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 35577888888888888877642221 0122 3457888888888888888888888776543 32 22 234677
Q ss_pred HHHHHHHhhcCHHHHHHHHHHccc-------CC----hhhHHHHHHHHhccCchhHHHHHHHHHhh
Q 044786 157 SLINFYGKFRCLEDADFVFSQLKR-------HN----TVVWTAKIVNNCREGHFHQVFNDFKEMGR 211 (340)
Q Consensus 157 ~l~~~~~~~~~~~~a~~~~~~~~~-------~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 211 (340)
.|...|...|++++|+.++++..+ ++ ..+.+.+-.++...+.+++|..+|+++.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888777542 11 22456666777778888888888888865
No 184
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.00 E-value=4.5e-05 Score=64.36 Aligned_cols=85 Identities=4% Similarity=-0.101 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHccc--C-ChhhHHHHHHHH
Q 044786 117 AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR--H-NTVVWTAKIVNN 193 (340)
Q Consensus 117 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~ 193 (340)
..+|..+..++.+.|++++|.+.++...+.... +...+..+..+|...|++++|.+.|++..+ | +...+..+...+
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 344555555555555555555555555544322 344455555555555555555555555432 1 333444444444
Q ss_pred hccCchhHH
Q 044786 194 CREGHFHQV 202 (340)
Q Consensus 194 ~~~~~~~~a 202 (340)
...++.+++
T Consensus 352 ~~~~~~~~a 360 (370)
T 1ihg_A 352 QKIKAQKDK 360 (370)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
No 185
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.00 E-value=2.2e-05 Score=54.13 Aligned_cols=83 Identities=6% Similarity=-0.143 Sum_probs=34.2
Q ss_pred cChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHH
Q 044786 91 ADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLED 170 (340)
Q Consensus 91 g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 170 (340)
|++++|+..|++..+.+..- +.+...+..+..++...|++++|...++...+.... +...+..+..++...|++++
T Consensus 4 g~~~~A~~~~~~al~~~~~~---p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQG---KDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHH
T ss_pred CcHHHHHHHHHHHHHcCCCC---ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHH
Confidence 44455555555544431000 122334444444444445555555555444444322 23344444444444444444
Q ss_pred HHHHHHH
Q 044786 171 ADFVFSQ 177 (340)
Q Consensus 171 a~~~~~~ 177 (340)
|...|++
T Consensus 80 A~~~~~~ 86 (117)
T 3k9i_A 80 GVELLLK 86 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 186
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.99 E-value=3.7e-05 Score=67.15 Aligned_cols=124 Identities=5% Similarity=-0.141 Sum_probs=69.8
Q ss_pred hhhccchhhHHHHHHHHHhhc--CCCC----CHHHHHHHHHHHHhcCChhHHHHHHhhcCc-------CC----cccHHH
Q 044786 20 CTFQKDSAGAFELLNHIRKRV--NIKP----TLLFLNRLLLMHVSCGQLDTARQLFDEMPL-------RD----FNSWAV 82 (340)
Q Consensus 20 ~~~~~~~~~a~~~~~~m~~~~--g~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-------~~----~~~~~~ 82 (340)
+...|++++|..++++..... -+.| ...+++.|..+|...|++++|+.++++... ++ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 345677777777776665431 1112 245677777777777777777776665441 11 124666
Q ss_pred HHHHHHcccChhHHHHHHHHHHHhh---cCCccccchH-HHHHHHHHHhhhccchhhHHHHHHHHHH
Q 044786 83 MIVGYVDVADYQECITLFAEMMKRK---KGHMLLVFPA-WIIVCVLKACVCTMNMELGKQVHGLLFK 145 (340)
Q Consensus 83 li~~~~~~g~~~~a~~~~~~m~~~~---~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 145 (340)
|...|...|++++|+.++++..... .|.+ .|+. .+...+-.++...+.+++|+.+|+.+++
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~--Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPS--HPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777776665431 1221 2222 2344444555555666666666655543
No 187
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.99 E-value=8.4e-05 Score=62.71 Aligned_cols=131 Identities=11% Similarity=0.022 Sum_probs=89.8
Q ss_pred cHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHH
Q 044786 79 SWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSL 158 (340)
Q Consensus 79 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 158 (340)
.|..+...+.+.|++++|++.|++.++.. +... .....+.+ .+.. ..+...|..+
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~-------~~~~----------~~~~~~~~-------~~~~-~~~~~~~~nl 279 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYV-------EGSR----------AAAEDADG-------AKLQ-PVALSCVLNI 279 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------HHHH----------HHSCHHHH-------GGGH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHh-------hcCc----------cccChHHH-------HHHH-HHHHHHHHHH
Confidence 36667778888899999999998887651 2110 00001111 1110 1145678888
Q ss_pred HHHHHhhcCHHHHHHHHHHcccC---ChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCC-hhhHHHHHHhcccCCch
Q 044786 159 INFYGKFRCLEDADFVFSQLKRH---NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKN-SYTFSSVLKACGGVDDD 234 (340)
Q Consensus 159 ~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~ 234 (340)
..+|.+.|++++|.+.+++..+. +...|..+..+|...|++++|+..|++..+. .|+ ...+..+...+...++.
T Consensus 280 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~~~~~~~~~ 357 (370)
T 1ihg_A 280 GACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQKIKAQ 357 (370)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHH
Confidence 89999999999999999987643 5667888889999999999999999998874 454 44555556666666665
Q ss_pred hc
Q 044786 235 GN 236 (340)
Q Consensus 235 ~~ 236 (340)
.+
T Consensus 358 ~~ 359 (370)
T 1ihg_A 358 KD 359 (370)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 188
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.98 E-value=0.00018 Score=52.68 Aligned_cols=98 Identities=10% Similarity=-0.043 Sum_probs=50.0
Q ss_pred HHHHHHHHHcccChhHHHHHHHHHHHhhcC------Ccc------ccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcC
Q 044786 80 WAVMIVGYVDVADYQECITLFAEMMKRKKG------HML------LVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLG 147 (340)
Q Consensus 80 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~------~~~------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 147 (340)
+......+.+.|++++|+..|.+....-.. +.. .+.+...|..+..++.+.|++++|...++...+..
T Consensus 14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~ 93 (162)
T 3rkv_A 14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE 93 (162)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 445556666677777777777766654000 000 02233445555555555555555555555555543
Q ss_pred CCCchhHHHHHHHHHHhhcCHHHHHHHHHHc
Q 044786 148 SSRNISLTGSLINFYGKFRCLEDADFVFSQL 178 (340)
Q Consensus 148 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 178 (340)
.. +...|..+..+|...|++++|...|+..
T Consensus 94 p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~a 123 (162)
T 3rkv_A 94 ET-NEKALFRRAKARIAAWKLDEAEEDLKLL 123 (162)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred Cc-chHHHHHHHHHHHHHhcHHHHHHHHHHH
Confidence 22 3444445555555555555555555443
No 189
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.92 E-value=0.006 Score=50.14 Aligned_cols=90 Identities=8% Similarity=-0.031 Sum_probs=42.4
Q ss_pred hhHHHHHHhhcCc---CCcccHHHHHHHHHccc--ChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccc-hhh
Q 044786 62 LDTARQLFDEMPL---RDFNSWAVMIVGYVDVA--DYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMN-MEL 135 (340)
Q Consensus 62 ~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~ 135 (340)
+++++.+++.+.. ++..+|+.-...+.+.| .+++++.+++++.+.+ +-+...|+.-.-.....|. +++
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d------prNy~AW~~R~~vl~~l~~~~~e 163 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD------ERNFHCWDYRRFVAAQAAVAPAE 163 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHhCcCHHH
Confidence 3455555555442 23334444444444444 2555566666665553 3344444444444444444 355
Q ss_pred HHHHHHHHHHcCCCCchhHHHHH
Q 044786 136 GKQVHGLLFKLGSSRNISLTGSL 158 (340)
Q Consensus 136 a~~~~~~~~~~~~~~~~~~~~~l 158 (340)
+++.++.+.+..+. |...|+..
T Consensus 164 el~~~~~~I~~~p~-N~SAW~~R 185 (331)
T 3dss_A 164 ELAFTDSLITRNFS-NYSSWHYR 185 (331)
T ss_dssp HHHHHHHHHHHCSC-CHHHHHHH
T ss_pred HHHHHHHHHHHCCC-CHHHHHHH
Confidence 55555555555433 34444433
No 190
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.90 E-value=9.2e-05 Score=53.54 Aligned_cols=61 Identities=5% Similarity=-0.112 Sum_probs=30.4
Q ss_pred cHHHHHHHHHcccChhHHHHHHHHHHHh-------hcCCccccchHHHH----HHHHHHhhhccchhhHHHHHHHHHH
Q 044786 79 SWAVMIVGYVDVADYQECITLFAEMMKR-------KKGHMLLVFPAWII----VCVLKACVCTMNMELGKQVHGLLFK 145 (340)
Q Consensus 79 ~~~~li~~~~~~g~~~~a~~~~~~m~~~-------~~~~~~~~~~~~~~----~~ll~~~~~~~~~~~a~~~~~~~~~ 145 (340)
.|+.+..++.+.|++++|+..+++.++. . +-+...| .....++...|++++|+..|+...+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~------pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN------QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT------STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC------CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4444455555555555555555555444 2 2233344 5555555555555555555554443
No 191
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.89 E-value=7e-05 Score=54.92 Aligned_cols=64 Identities=19% Similarity=0.216 Sum_probs=45.1
Q ss_pred ccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcC
Q 044786 78 NSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLG 147 (340)
Q Consensus 78 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 147 (340)
..|..+..+|.+.|++++|+..+++.+... +.+...|..+..++...|++++|...|+...+..
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~------p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKRE------ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcC------CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 356666777777777777777777777763 4455677777777777777777777777776664
No 192
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.88 E-value=0.00024 Score=51.40 Aligned_cols=67 Identities=9% Similarity=-0.030 Sum_probs=42.0
Q ss_pred HHHHHHHHHcccChhHHHHHHHHHHHhhcCCc------cccchHHHHHHHHHHhhhccchhhHHHHHHHHHHc
Q 044786 80 WAVMIVGYVDVADYQECITLFAEMMKRKKGHM------LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKL 146 (340)
Q Consensus 80 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 146 (340)
+......+.+.|++++|+..|++.++.....+ ..+.+...|..+..++.+.|++++|+..++..++.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l 86 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY 86 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 44556677788999999999999988841100 00001236666666666666766666666665554
No 193
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.82 E-value=3.9e-05 Score=63.96 Aligned_cols=145 Identities=7% Similarity=-0.041 Sum_probs=73.7
Q ss_pred hHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCcCCcccHHHHHHHHHcccC
Q 044786 13 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVAD 92 (340)
Q Consensus 13 ~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~ 92 (340)
+..+...+.+.|++++|...|+..... .|+... +...++.+++...+. ...|..+..+|.+.|+
T Consensus 182 ~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~-------~~~~~~~~~~~~~l~------~~~~~nla~~~~~~g~ 245 (338)
T 2if4_A 182 RKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDFM-------FQLYGKYQDMALAVK------NPCHLNIAACLIKLKR 245 (338)
T ss_dssp HHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHHH-------HTCCHHHHHHHHHHH------THHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH---hccchh-------hhhcccHHHHHHHHH------HHHHHHHHHHHHHcCC
Confidence 444455555666666666666666544 233221 112223333322221 1367788888889999
Q ss_pred hhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHH-HHhhcCHHHH
Q 044786 93 YQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINF-YGKFRCLEDA 171 (340)
Q Consensus 93 ~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a 171 (340)
+++|+..+++.++.. +.+...|..+..++...|++++|...|+...+.... +...+..+... ....+..+++
T Consensus 246 ~~~A~~~~~~al~~~------p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 246 YDEAIGHCNIVLTEE------EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp CHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988874 446778888889999999999999998888765432 34445555444 2344567777
Q ss_pred HHHHHHccc
Q 044786 172 DFVFSQLKR 180 (340)
Q Consensus 172 ~~~~~~~~~ 180 (340)
...|..|..
T Consensus 319 ~~~~~~~l~ 327 (338)
T 2if4_A 319 KEMYKGIFK 327 (338)
T ss_dssp ---------
T ss_pred HHHHHHhhC
Confidence 888887754
No 194
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.80 E-value=2.3e-05 Score=53.22 Aligned_cols=63 Identities=6% Similarity=-0.080 Sum_probs=37.7
Q ss_pred cHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcC
Q 044786 79 SWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLG 147 (340)
Q Consensus 79 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 147 (340)
.|..+...+...|++++|++.|++..+.. +.+...+..+..++.+.|++++|.+.++...+..
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQ------PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 34555556666666666666666666652 3344556666666666666666666666665543
No 195
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.77 E-value=0.00075 Score=47.93 Aligned_cols=111 Identities=13% Similarity=0.009 Sum_probs=79.3
Q ss_pred ccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHh----h
Q 044786 90 VADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK----F 165 (340)
Q Consensus 90 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 165 (340)
.+++++|.+.|++..+.+ .|+.. +...+...+.+++|.+.|+...+.| +...+..|...|.. .
T Consensus 8 ~~d~~~A~~~~~~aa~~g------~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~ 74 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN------EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVK 74 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT------CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSC
T ss_pred ccCHHHHHHHHHHHHcCC------CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCC
Confidence 346777888888887774 34444 5566666667777888888777775 55667777777776 6
Q ss_pred cCHHHHHHHHHHcccC-ChhhHHHHHHHHhc----cCchhHHHHHHHHHhhcc
Q 044786 166 RCLEDADFVFSQLKRH-NTVVWTAKIVNNCR----EGHFHQVFNDFKEMGRER 213 (340)
Q Consensus 166 ~~~~~a~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~ 213 (340)
+++++|.+.|++..+. +...+..+-..|.. .+++++|...|++..+.|
T Consensus 75 ~d~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 75 KDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 7888888888876543 56667777777777 678888888888877765
No 196
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.71 E-value=0.0013 Score=46.60 Aligned_cols=114 Identities=9% Similarity=-0.044 Sum_probs=89.2
Q ss_pred cCchhHHHHHHHHHhhcccCCChhhHHHHHHhcccCCchhchHHHHHHHHHHhCCCccHHHHHHHHHHHhc----cCCHH
Q 044786 196 EGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGK----CRLLR 271 (340)
Q Consensus 196 ~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~ 271 (340)
.+++++|+..|++..+.| .|+.. +-..|...+..++ +..+++...+.| ++..+..|-..|.. .++++
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~-A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQK-LFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHH-HHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHH
T ss_pred ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHH-HHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHH
Confidence 346788888888888876 33333 5555666666655 777777776654 56667777777877 78999
Q ss_pred HHHHHHHHhhcCCcHHHHHHHHHHHHH----cCchHHHHHHHHHHHHcCCc
Q 044786 272 DAERVFELIVDKKNIASWNAMLVGYIR----NGLYVEATKFLYLMKASGIQ 318 (340)
Q Consensus 272 ~A~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~ 318 (340)
+|.+.|++..+..++..+..|-..|.. .+++++|.++|++-.+.|..
T Consensus 79 ~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 129 (138)
T 1klx_A 79 KAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 129 (138)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCH
Confidence 999999999888899999999999998 89999999999999988754
No 197
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.64 E-value=0.014 Score=47.89 Aligned_cols=131 Identities=8% Similarity=-0.089 Sum_probs=95.2
Q ss_pred hhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcC--ChhHHHHHHhhcCc---CCcccHHHHHHHHHcccC-hhHHHHH
Q 044786 26 SAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCG--QLDTARQLFDEMPL---RDFNSWAVMIVGYVDVAD-YQECITL 99 (340)
Q Consensus 26 ~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~-~~~a~~~ 99 (340)
+++++.+++.+... .+-+..+|+.-.-++.+.+ .+++++++++.+.+ +|..+|+.-...+...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~--~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 68899999999887 4558889988888888887 48999999999884 455677777777777787 5899999
Q ss_pred HHHHHHhhcCCccccchHHHHHHHHHHhhhc--------------cchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhh
Q 044786 100 FAEMMKRKKGHMLLVFPAWIIVCVLKACVCT--------------MNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF 165 (340)
Q Consensus 100 ~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 165 (340)
++++.+.. +-|...|+.....+.+. +.++++.+.+.......+. |...|+.+-..+.+.
T Consensus 168 ~~~~I~~~------p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~ 240 (331)
T 3dss_A 168 TDSLITRN------FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAG 240 (331)
T ss_dssp HHHHHHHC------SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSS
T ss_pred HHHHHHHC------CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhc
Confidence 99999985 55666776665555444 4567777777777766544 555555444444433
No 198
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.60 E-value=0.00049 Score=46.96 Aligned_cols=78 Identities=5% Similarity=-0.143 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHH
Q 044786 95 ECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFV 174 (340)
Q Consensus 95 ~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 174 (340)
+|++.|++..+.. +.+...+..+...+...|++++|...++...+.... +...+..+..+|...|++++|...
T Consensus 3 ~a~~~~~~al~~~------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~ 75 (115)
T 2kat_A 3 AITERLEAMLAQG------TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQA 75 (115)
T ss_dssp CHHHHHHHHHTTT------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhC------CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3455555555442 334455556666666666666666666666555432 344555566666666666666666
Q ss_pred HHHcc
Q 044786 175 FSQLK 179 (340)
Q Consensus 175 ~~~~~ 179 (340)
|++..
T Consensus 76 ~~~al 80 (115)
T 2kat_A 76 WESGL 80 (115)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65543
No 199
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.60 E-value=0.001 Score=42.84 Aligned_cols=61 Identities=15% Similarity=0.127 Sum_probs=28.1
Q ss_pred HHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHc
Q 044786 80 WAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKL 146 (340)
Q Consensus 80 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 146 (340)
+..+...+...|++++|++.|++..... +.+...+..+...+.+.|++++|...++...+.
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELD------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3334444444455555555555544442 223334444444444455555555555444443
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.59 E-value=0.00046 Score=47.10 Aligned_cols=78 Identities=12% Similarity=-0.011 Sum_probs=56.1
Q ss_pred hhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCc---CCcccHHHHHHHHHcccChhHHHHHHHHH
Q 044786 27 AGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL---RDFNSWAVMIVGYVDVADYQECITLFAEM 103 (340)
Q Consensus 27 ~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m 103 (340)
+.|++.|+...+. -+.+...+..+...+.+.|++++|...|++... .+...|..+...+...|++++|...|++.
T Consensus 2 ~~a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 2 QAITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CCHHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3566677777654 344667777778888888888888888877652 24446777777888888888888888877
Q ss_pred HHh
Q 044786 104 MKR 106 (340)
Q Consensus 104 ~~~ 106 (340)
.+.
T Consensus 80 l~~ 82 (115)
T 2kat_A 80 LAA 82 (115)
T ss_dssp HHH
T ss_pred HHh
Confidence 765
No 201
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.54 E-value=0.0029 Score=56.47 Aligned_cols=167 Identities=8% Similarity=-0.054 Sum_probs=103.3
Q ss_pred chhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHhhcCcC---CcccHHHHHHHHHccc
Q 044786 25 DSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQ----------LDTARQLFDEMPLR---DFNSWAVMIVGYVDVA 91 (340)
Q Consensus 25 ~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g 91 (340)
.-++|++.++.+... -+-+..+|+.--.++.+.|+ ++++++.++.+.+. +..+|+.-...+.+.+
T Consensus 44 ~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Confidence 345667777777765 23345556555555555555 77777777777633 4445666666666777
Q ss_pred --ChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhcc-chhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhh---
Q 044786 92 --DYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTM-NMELGKQVHGLLFKLGSSRNISLTGSLINFYGKF--- 165 (340)
Q Consensus 92 --~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 165 (340)
+++++++.++++.+.+ +-+.+.|+.-.....+.| .++++.+.++.+.+..+. +...|+.....+.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d------~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~ 194 (567)
T 1dce_A 122 EPNWARELELCARFLEAD------ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQ 194 (567)
T ss_dssp SCCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCC
T ss_pred cccHHHHHHHHHHHHhhc------cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccc
Confidence 5577888888887774 456666666666666666 677777777777666544 555565555544442
Q ss_pred -----------cCHHHHHHHHHHcc--cC-ChhhHHHHHHHHhccCchh
Q 044786 166 -----------RCLEDADFVFSQLK--RH-NTVVWTAKIVNNCREGHFH 200 (340)
Q Consensus 166 -----------~~~~~a~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~ 200 (340)
+.++++.+.+++.. .| |..+|+-.-..+.+.++.+
T Consensus 195 ~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 195 PDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp CCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCS
T ss_pred ccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCcc
Confidence 44666766666654 22 5566666666666655533
No 202
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.50 E-value=0.00027 Score=47.66 Aligned_cols=61 Identities=8% Similarity=0.124 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHhhcC---cCCcccHHHHHHHHHcccChhHHHHHHHHHHHh
Q 044786 46 LLFLNRLLLMHVSCGQLDTARQLFDEMP---LRDFNSWAVMIVGYVDVADYQECITLFAEMMKR 106 (340)
Q Consensus 46 ~~~~~~li~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 106 (340)
...+..+...+.+.|++++|.+.|++.. ..+...|..+..++...|++++|++.+++..+.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 3445555555555566666666555544 123345555666666666666666666666554
No 203
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.49 E-value=0.013 Score=52.32 Aligned_cols=165 Identities=5% Similarity=-0.115 Sum_probs=123.0
Q ss_pred CChhHHHHHHhhcCcC---CcccHHHHHHHHHcccC----------hhHHHHHHHHHHHhhcCCccccchHHHHHHHHHH
Q 044786 60 GQLDTARQLFDEMPLR---DFNSWAVMIVGYVDVAD----------YQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKA 126 (340)
Q Consensus 60 ~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~ 126 (340)
..-++|++.++.+..- +..+|+.--..+...|+ ++++++.++++.+.. +-+..+|+.-.-.
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~------pK~y~aW~hR~w~ 116 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN------PKSYGTWHHRCWL 116 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC------TTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC------CCCHHHHHHHHHH
Confidence 3446789999888743 33457665556666666 899999999999985 5566788877777
Q ss_pred hhhcc--chhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhc-CHHHHHHHHHHcccC---ChhhHHHHHHHHhcc----
Q 044786 127 CVCTM--NMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFR-CLEDADFVFSQLKRH---NTVVWTAKIVNNCRE---- 196 (340)
Q Consensus 127 ~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~---- 196 (340)
+.+.+ +++++.+.++.+.+.... +...|+.-.-.+.+.| .++++.+.++++.+. |..+|+.....+.+.
T Consensus 117 l~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~ 195 (567)
T 1dce_A 117 LSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP 195 (567)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCC
T ss_pred HHHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccc
Confidence 77888 679999999999998755 7778877777777888 899999999998765 567787766666553
Q ss_pred ----------CchhHHHHHHHHHhhcccCC-ChhhHHHHHHhcccCCc
Q 044786 197 ----------GHFHQVFNDFKEMGRERIKK-NSYTFSSVLKACGGVDD 233 (340)
Q Consensus 197 ----------~~~~~a~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~~~ 233 (340)
+.++++++.+++.... .| |...|.-.-..+.+.++
T Consensus 196 ~~~~~~~~~~~~~~eel~~~~~ai~~--~P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 196 DSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp CSSSCCSSCHHHHHHHHHHHHHHHHH--CSSCSHHHHHHHHHHSCCCC
T ss_pred cccccccccHHHHHHHHHHHHHHHhh--CCCCccHHHHHHHHHhcCCC
Confidence 5678999999888874 45 45556555555555554
No 204
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.46 E-value=0.00077 Score=44.75 Aligned_cols=83 Identities=14% Similarity=0.047 Sum_probs=63.4
Q ss_pred cHHHHHHHHHHHhccCCHHHHHHHHHHhhc-C-CcHHHHHHHHHHHHHcCchHHHHHHHHHHHHcCC-ccchhHHHHHHH
Q 044786 253 DEYVQCGLVDMYGKCRLLRDAERVFELIVD-K-KNIASWNAMLVGYIRNGLYVEATKFLYLMKASGI-QIQESLINDLRI 329 (340)
Q Consensus 253 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~~~~~t~~~ll~ 329 (340)
+...+..+...|.+.|++++|.+.|++... . .+...|..+..+|...|++++|++.|++..+..- .++......+..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~~ 85 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQD 85 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHHH
Confidence 567788888899999999999999998876 3 3677888899999999999999999998765532 345555555555
Q ss_pred HhhhcC
Q 044786 330 ACSSIS 335 (340)
Q Consensus 330 a~~~~g 335 (340)
.+...+
T Consensus 86 ~l~~~~ 91 (100)
T 3ma5_A 86 AKLKAE 91 (100)
T ss_dssp HHHHHH
T ss_pred HHHHcc
Confidence 555444
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.41 E-value=0.00055 Score=49.37 Aligned_cols=97 Identities=11% Similarity=-0.063 Sum_probs=66.3
Q ss_pred hhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChh----------HHHHHHhhcC--cC-CcccHHHHHHH
Q 044786 20 CTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLD----------TARQLFDEMP--LR-DFNSWAVMIVG 86 (340)
Q Consensus 20 ~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~----------~a~~~~~~~~--~~-~~~~~~~li~~ 86 (340)
..+.+.+++|.+.++...+. -+.+...|..+-.++...++++ +|+..|++.. .| +..+|..+..+
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~a 89 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 35667889999999998877 3557888888888888877654 7777776655 22 34466677777
Q ss_pred HHccc-----------ChhHHHHHHHHHHHhhcCCccccchHHHHHHHHH
Q 044786 87 YVDVA-----------DYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLK 125 (340)
Q Consensus 87 ~~~~g-----------~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~ 125 (340)
|...| ++++|++.|++..+. .|+...|...+.
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l-------~P~~~~y~~al~ 132 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDE-------QPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH-------CTTCHHHHHHHH
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHh-------CCCCHHHHHHHH
Confidence 76553 677777777777766 455555544433
No 206
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.40 E-value=0.0011 Score=42.73 Aligned_cols=61 Identities=16% Similarity=0.225 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHhhcCc---CCcccHHHHHHHHHcccChhHHHHHHHHHHHh
Q 044786 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPL---RDFNSWAVMIVGYVDVADYQECITLFAEMMKR 106 (340)
Q Consensus 46 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 106 (340)
...+..+...+.+.|++++|...|++... .+..++..+...+...|++++|.+.+++..+.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34555566666666667666666666542 23445666667777777777777777777766
No 207
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.39 E-value=0.0017 Score=46.79 Aligned_cols=72 Identities=7% Similarity=-0.097 Sum_probs=45.6
Q ss_pred HcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchh----------hHHHHHHHHHHcCCCCchhHHHH
Q 044786 88 VDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNME----------LGKQVHGLLFKLGSSRNISLTGS 157 (340)
Q Consensus 88 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~----------~a~~~~~~~~~~~~~~~~~~~~~ 157 (340)
.+.+.+++|.+.+++..+.. +.+...|..+..++...++++ +|+..|++..+.... +...|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~------P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~ 85 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN------PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWC 85 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHH
Confidence 35567788888888888774 456667777777777776654 666666666555433 4445555
Q ss_pred HHHHHHhhc
Q 044786 158 LINFYGKFR 166 (340)
Q Consensus 158 l~~~~~~~~ 166 (340)
+..+|...|
T Consensus 86 LG~ay~~lg 94 (158)
T 1zu2_A 86 IGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 555555543
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.31 E-value=0.0013 Score=43.68 Aligned_cols=62 Identities=15% Similarity=0.131 Sum_probs=31.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHhhcCc--C-CcccHHHHHHHHHcccChhHHHHHHHHHHHh
Q 044786 45 TLLFLNRLLLMHVSCGQLDTARQLFDEMPL--R-DFNSWAVMIVGYVDVADYQECITLFAEMMKR 106 (340)
Q Consensus 45 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 106 (340)
+...+..+...+.+.|++++|++.|++..+ | +...|..+..+|...|++++|.+.|++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344445555555555555555555555441 1 3334555555555555555555555555443
No 209
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.26 E-value=0.011 Score=55.31 Aligned_cols=102 Identities=11% Similarity=0.039 Sum_probs=49.8
Q ss_pred HHhhcCHHHHHHHHHHcccCChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCChhhHHHHHHhcccCCchhchHHHH
Q 044786 162 YGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQM 241 (340)
Q Consensus 162 ~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~ 241 (340)
....|++++|.++.+.+. +...|..+...+.+.++++.|.+.|.++.. |..+...+...++.+. ...+
T Consensus 662 ~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~-~~~~ 729 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEG-LVTL 729 (814)
T ss_dssp HHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHH-HHHH
T ss_pred hhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHH-HHHH
Confidence 345566666666655442 334566666666666666666666665543 1222223333444322 2333
Q ss_pred HHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhh
Q 044786 242 HANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIV 281 (340)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 281 (340)
.+.....| -++.-..+|.+.|++++|.+++.++.
T Consensus 730 ~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 730 AKDAETTG------KFNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp HHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHcC------chHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 33333322 12233344555666666666666553
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.20 E-value=0.069 Score=44.29 Aligned_cols=141 Identities=3% Similarity=-0.200 Sum_probs=87.0
Q ss_pred cCCcccHHHHHHHHHc--c---cChhHHHHHHHHHHHhhcCCccccch-HHHHHHHHHHhhhccc-----hhhHHH---H
Q 044786 74 LRDFNSWAVMIVGYVD--V---ADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTMN-----MELGKQ---V 139 (340)
Q Consensus 74 ~~~~~~~~~li~~~~~--~---g~~~~a~~~~~~m~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~-----~~~a~~---~ 139 (340)
..+...|...+++... . ....+|..+|++..+.. |+ ...+..+.-++..... -..... -
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-------P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a 263 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-------PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTE 263 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHH
Confidence 4477788888876543 2 34578999999999883 43 3444443333321110 011111 1
Q ss_pred HHHHHH-cCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHcc--cCChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCC
Q 044786 140 HGLLFK-LGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK--RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKK 216 (340)
Q Consensus 140 ~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 216 (340)
++.... .....+..+|..+.-.+...|++++|...+++.. .++...|..+-..+...|++++|.+.|++.... .|
T Consensus 264 ~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P 341 (372)
T 3ly7_A 264 IDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RP 341 (372)
T ss_dssp HHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SC
T ss_pred HHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CC
Confidence 111111 1124466677777766777788888888888875 455556666677777888888888888887764 57
Q ss_pred ChhhHHH
Q 044786 217 NSYTFSS 223 (340)
Q Consensus 217 ~~~t~~~ 223 (340)
...||..
T Consensus 342 ~~~t~~~ 348 (372)
T 3ly7_A 342 GANTLYW 348 (372)
T ss_dssp SHHHHHH
T ss_pred CcChHHH
Confidence 6666643
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.06 E-value=0.0087 Score=49.61 Aligned_cols=62 Identities=10% Similarity=-0.138 Sum_probs=31.1
Q ss_pred chHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHc
Q 044786 115 FPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQL 178 (340)
Q Consensus 115 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 178 (340)
.+..+|..+...+...|++++|.+.+++....+ |+...|..+...+.-.|++++|.+.|++.
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~A 336 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTA 336 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 344444444444444455555555555555553 34444444455555555555555555544
No 212
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.03 E-value=0.0038 Score=40.93 Aligned_cols=59 Identities=8% Similarity=0.017 Sum_probs=38.7
Q ss_pred HHHHHcccChhHHHHHHHHHHHhhcCCccccchHH-HHHHHHHHhhhccchhhHHHHHHHHHHcCC
Q 044786 84 IVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAW-IIVCVLKACVCTMNMELGKQVHGLLFKLGS 148 (340)
Q Consensus 84 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 148 (340)
...+...|++++|++.|++..+.. +.+.. .+..+..++...|++++|.+.|+...+...
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE------PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC------SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC------CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 345566677777777777777663 33445 666666777777777777777777666643
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.93 E-value=0.0019 Score=55.39 Aligned_cols=83 Identities=6% Similarity=-0.190 Sum_probs=62.0
Q ss_pred hccchhhHHHHHHHHHHc---CCCC----chhHHHHHHHHHHhhcCHHHHHHHHHHccc----------C-ChhhHHHHH
Q 044786 129 CTMNMELGKQVHGLLFKL---GSSR----NISLTGSLINFYGKFRCLEDADFVFSQLKR----------H-NTVVWTAKI 190 (340)
Q Consensus 129 ~~~~~~~a~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----------~-~~~~~~~li 190 (340)
..|++++|..++++.++. -+.| ...+++.|..+|...|++++|+.++++..+ | ...+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 356788899888877653 1122 235788888999999999999888887652 1 234688888
Q ss_pred HHHhccCchhHHHHHHHHHhh
Q 044786 191 VNNCREGHFHQVFNDFKEMGR 211 (340)
Q Consensus 191 ~~~~~~~~~~~a~~~~~~m~~ 211 (340)
..|...|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999988888754
No 214
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.91 E-value=0.0055 Score=52.58 Aligned_cols=91 Identities=10% Similarity=0.012 Sum_probs=69.9
Q ss_pred cccChhHHHHHHHHHHHhhcCCc-cccch-HHHHHHHHHHhhhccchhhHHHHHHHHHHc-----CC-CCc-hhHHHHHH
Q 044786 89 DVADYQECITLFAEMMKRKKGHM-LLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKL-----GS-SRN-ISLTGSLI 159 (340)
Q Consensus 89 ~~g~~~~a~~~~~~m~~~~~~~~-~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~l~ 159 (340)
..|++++|+.++++.++....+. +..|+ ..+++.+..+|...|++++|..++++.++. |. .|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 45789999999999887642221 11233 458999999999999999999999987643 32 233 35788999
Q ss_pred HHHHhhcCHHHHHHHHHHcc
Q 044786 160 NFYGKFRCLEDADFVFSQLK 179 (340)
Q Consensus 160 ~~~~~~~~~~~a~~~~~~~~ 179 (340)
..|...|++++|+.++++..
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHH
Confidence 99999999999999988754
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.80 E-value=0.0049 Score=52.93 Aligned_cols=25 Identities=8% Similarity=-0.045 Sum_probs=13.2
Q ss_pred hHHHHHHHHhccCchhHHHHHHHHH
Q 044786 185 VWTAKIVNNCREGHFHQVFNDFKEM 209 (340)
Q Consensus 185 ~~~~li~~~~~~~~~~~a~~~~~~m 209 (340)
+++.+..+|...|++++|+.++++.
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~ 355 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRT 355 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHH
Confidence 4555555555555555555555544
No 216
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.78 E-value=0.041 Score=51.35 Aligned_cols=155 Identities=10% Similarity=0.034 Sum_probs=75.1
Q ss_pred HHhhhccchhhHHH-HHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCcCCcccHHHHHHHHHcccChhHH
Q 044786 18 KECTFQKDSAGAFE-LLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQEC 96 (340)
Q Consensus 18 ~~~~~~~~~~~a~~-~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 96 (340)
......++++.|.+ ++..+ + +......++..+.+.|..++|.++.+.- ..-.......|+++.|
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i------~-~~~~~~~~~~~l~~~~~~~~a~~~~~~~--------~~~f~~~l~~~~~~~A 671 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNV------E-GKDSLTKIARFLEGQEYYEEALNISPDQ--------DQKFELALKVGQLTLA 671 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGC------C-CHHHHHHHHHHHHHTTCHHHHHHHCCCH--------HHHHHHHHHHTCHHHH
T ss_pred hHHHHhCCHHHHHHHHHhcC------C-chHHHHHHHHHHHhCCChHHheecCCCc--------chheehhhhcCCHHHH
Confidence 33345677877766 44211 1 0112255566666667766666654321 1112233455666666
Q ss_pred HHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHH
Q 044786 97 ITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFS 176 (340)
Q Consensus 97 ~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 176 (340)
.++.+. ..+...|..+...+.+.++++.|.+.|..+.. |..+...|...|+.+...++-+
T Consensus 672 ~~~~~~-----------~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~ 731 (814)
T 3mkq_A 672 RDLLTD-----------ESAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAK 731 (814)
T ss_dssp HHHHTT-----------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHh-----------hCcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHH
Confidence 665332 23445666666666666666666666665432 2233333444444444433333
Q ss_pred HcccCChhhHHHHHHHHhccCchhHHHHHHHHH
Q 044786 177 QLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEM 209 (340)
Q Consensus 177 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 209 (340)
.....+ -++.-..+|.+.|++++|++++.++
T Consensus 732 ~a~~~~--~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 732 DAETTG--KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHTT--CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHcC--chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 322221 1222333344455555555555444
No 217
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.65 E-value=0.0098 Score=51.05 Aligned_cols=90 Identities=7% Similarity=-0.066 Sum_probs=54.7
Q ss_pred HHHHHhcCChhHHHHHHhhcCc-------C-C---cccHHHHHHHHHcccChhHHHHHHHHHHHhh---cCCccccch-H
Q 044786 53 LLMHVSCGQLDTARQLFDEMPL-------R-D---FNSWAVMIVGYVDVADYQECITLFAEMMKRK---KGHMLLVFP-A 117 (340)
Q Consensus 53 i~~~~~~~~~~~a~~~~~~~~~-------~-~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---~~~~~~~~~-~ 117 (340)
+.-+.+.|++++|++++++... + + ..+++.+...|...|++++|+.++++.+... .|. ..|+ .
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~--~Hp~~a 371 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPG--SHPVRG 371 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCS--SCHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCC--CChHHH
Confidence 4445566777777777765541 1 1 1257777777777788888877777766542 111 1222 3
Q ss_pred HHHHHHHHHhhhccchhhHHHHHHHHH
Q 044786 118 WIIVCVLKACVCTMNMELGKQVHGLLF 144 (340)
Q Consensus 118 ~~~~~ll~~~~~~~~~~~a~~~~~~~~ 144 (340)
.+++.|...|...|++++|..++++..
T Consensus 372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 372 VQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 366666666777777777766666543
No 218
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.56 E-value=0.0032 Score=41.34 Aligned_cols=55 Identities=16% Similarity=0.004 Sum_probs=35.8
Q ss_pred HHHhhhccchhhHHHHHHHHHhhcCCCCCHH-HHHHHHHHHHhcCChhHHHHHHhhcC
Q 044786 17 IKECTFQKDSAGAFELLNHIRKRVNIKPTLL-FLNRLLLMHVSCGQLDTARQLFDEMP 73 (340)
Q Consensus 17 i~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~ 73 (340)
...+.+.|++++|.+.|+...+. .+.+.. .+..+..++...|++++|.+.|++..
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 62 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAI 62 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34455667777777777777665 233445 66666666777777777777776665
No 219
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.48 E-value=0.025 Score=36.78 Aligned_cols=67 Identities=10% Similarity=-0.052 Sum_probs=52.5
Q ss_pred CccHHHHHHHHHHHhccCC---HHHHHHHHHHhhc--CCcHHHHHHHHHHHHHcCchHHHHHHHHHHHHcCC
Q 044786 251 ESDEYVQCGLVDMYGKCRL---LRDAERVFELIVD--KKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGI 317 (340)
Q Consensus 251 ~~~~~~~~~li~~~~~~~~---~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 317 (340)
+.++..+..+..++...++ .++|..++++... +.++.....+...+.+.|++++|+..|+++.+..-
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3466677777777754444 7899999988876 34777888888899999999999999999987743
No 220
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.32 E-value=0.1 Score=41.62 Aligned_cols=141 Identities=9% Similarity=-0.020 Sum_probs=83.0
Q ss_pred chhhHHHHHHHHHhhcCCCCCHHHHHHHHHH------HHhcCChhHHHHHHhhcCcCCcc--cHHHHHHHH-Hc--cc--
Q 044786 25 DSAGAFELLNHIRKRVNIKPTLLFLNRLLLM------HVSCGQLDTARQLFDEMPLRDFN--SWAVMIVGY-VD--VA-- 91 (340)
Q Consensus 25 ~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~------~~~~~~~~~a~~~~~~~~~~~~~--~~~~li~~~-~~--~g-- 91 (340)
+..+|.+++.+.... +. ..|-.. -.+.++..+..+.+.+....++. .|..++.+- .. .|
T Consensus 102 ~~~RA~~Ly~ra~~y-~~-------raL~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~ 173 (301)
T 3u64_A 102 AYSRARKLYLRGARY-AL-------SSLETAYPGFTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGS 173 (301)
T ss_dssp HHHHHHHHHHHHHHH-HH-------HHHHHHSTTHHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTS
T ss_pred hHHHHHHHHHHHHHH-HH-------HHHHHhCccHHHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCCh
Confidence 355667777666655 21 111111 22344555566666666655544 466655432 22 23
Q ss_pred ----ChhHHHHHHHHHHHhhcCCccccch---HHHHHHHHHHhhhc-----cchhhHHHHHHHHHHcCCCCchhHHHHHH
Q 044786 92 ----DYQECITLFAEMMKRKKGHMLLVFP---AWIIVCVLKACVCT-----MNMELGKQVHGLLFKLGSSRNISLTGSLI 159 (340)
Q Consensus 92 ----~~~~a~~~~~~m~~~~~~~~~~~~~---~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 159 (340)
....|...+++..+. .|+ ...|..+...|.+. |+.++|.+.|++.++.+..-+..++....
T Consensus 174 ~Al~~l~~A~a~lerAleL-------DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA 246 (301)
T 3u64_A 174 ALPDTVHAAVMMLERACDL-------WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYA 246 (301)
T ss_dssp CCHHHHHHHHHHHHHHHHH-------CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHh-------CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHH
Confidence 345677777777776 344 55777777777774 77778888777777776543455666666
Q ss_pred HHHHhh-cCHHHHHHHHHHccc
Q 044786 160 NFYGKF-RCLEDADFVFSQLKR 180 (340)
Q Consensus 160 ~~~~~~-~~~~~a~~~~~~~~~ 180 (340)
+.++.. |+.+++.+.+++...
T Consensus 247 ~~l~~~~gd~~~a~~~L~kAL~ 268 (301)
T 3u64_A 247 DALCIPLNNRAGFDEALDRALA 268 (301)
T ss_dssp HHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHc
Confidence 666663 667777777766553
No 221
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.11 E-value=0.26 Score=36.10 Aligned_cols=129 Identities=12% Similarity=-0.016 Sum_probs=78.8
Q ss_pred HHHHhhcCHHHHHHHHHHcccCChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCChhhHHHHHHhcccCCchhchHH
Q 044786 160 NFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGR 239 (340)
Q Consensus 160 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~ 239 (340)
+.....|+++.|.++.+++ .+...|..+.....+.|+++-|.+.|.+... +..+.-.|...|+.+. ..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~-L~ 80 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNK-LS 80 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHH-HH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHH-HH
Confidence 4455678888888777765 3566788888888888888888888877754 2334444444555433 33
Q ss_pred HHHHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhcCCcHHHHHHHHHHHHHcCchHHHHHHHHHH
Q 044786 240 QMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLM 312 (340)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 312 (340)
.+.+.....| -++.-...+.-.|+++++.++|.+...-|... ......|-.+.|.++.+++
T Consensus 81 kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~------~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 81 KMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAY------AVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHH------HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHH------HHHHHcCcHHHHHHHHHHh
Confidence 4433333333 23455556667789999999887765322111 1112356666777777665
No 222
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.85 E-value=0.34 Score=35.43 Aligned_cols=128 Identities=9% Similarity=0.025 Sum_probs=65.0
Q ss_pred HHHhcCChhHHHHHHhhcCcCCcccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchh
Q 044786 55 MHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNME 134 (340)
Q Consensus 55 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 134 (340)
.....|+++.|.++.+.+ .+...|..|.......|+++-|.++|.+...- ..+.-.|.-.|+.+
T Consensus 14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~--------------~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHSF--------------DKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH--------------HHHHHHHHHHTCHH
T ss_pred HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCH--------------HHHHHHHHHhCCHH
Confidence 344556666666665554 34445666666666666666666666665322 12222333344444
Q ss_pred hHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHcccCChhhHHHHHHHHhccCchhHHHHHHHHH
Q 044786 135 LGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEM 209 (340)
Q Consensus 135 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 209 (340)
...++-+.....| -++.....+...|+++++.++|.+..+.... .......|..+.|.++.+++
T Consensus 78 ~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA-----~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 78 KLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLA-----YAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHH-----HHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHH-----HHHHHHcCcHHHHHHHHHHh
Confidence 4444433333333 1344445556667777777776654432111 11111245555666665554
No 223
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.78 E-value=0.055 Score=35.09 Aligned_cols=49 Identities=8% Similarity=0.112 Sum_probs=27.1
Q ss_pred hhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcC
Q 044786 93 YQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLG 147 (340)
Q Consensus 93 ~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 147 (340)
.++|..++++.+..+ +-+......+...+.+.|++++|...|+.+.+..
T Consensus 25 ~~~A~~~l~~AL~~d------p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 25 TDEVSLLLEQALQLE------PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHC------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 455666666665553 3344455555555555666666666665555543
No 224
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.60 E-value=0.34 Score=33.59 Aligned_cols=129 Identities=12% Similarity=0.008 Sum_probs=69.3
Q ss_pred cchhHHHHHH--hhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCc-------------
Q 044786 10 TDMYTCLIKE--CTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL------------- 74 (340)
Q Consensus 10 ~~~~~~li~~--~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~------------- 74 (340)
.++...++.+ ..-.|..++..++.....+. . +..-||-+|.-....-+-+-..+.++.+-+
T Consensus 5 ~el~kkLmeAK~~ildG~v~qGveii~k~~~s-s---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrV 80 (172)
T 1wy6_A 5 SEIIRKLMDAKKFLLDGYIDEGVKIVLEITKS-S---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSV 80 (172)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-S---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHcCC-C---CccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHH
Confidence 3444555555 34468888888888887766 2 445555555555544455555555544431
Q ss_pred --------CCcccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHc
Q 044786 75 --------RDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKL 146 (340)
Q Consensus 75 --------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 146 (340)
.+....+..+......|.-++-.+++..+.... +|+......+..+|.+.|+..++.+++.+.-+.
T Consensus 81 i~C~~~~n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~------~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 81 VECGVINNTLNEHVNKALDILVIQGKRDKLEEIGREILKNN------EVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C------CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHhcchHHHHHHHHHHHHHhccHhHHHHHHHHHhccC------CCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 122234445555555555555555555543221 455555555555555555555555555555555
Q ss_pred CC
Q 044786 147 GS 148 (340)
Q Consensus 147 ~~ 148 (340)
|+
T Consensus 155 G~ 156 (172)
T 1wy6_A 155 GE 156 (172)
T ss_dssp TC
T ss_pred hh
Confidence 54
No 225
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.34 E-value=0.00042 Score=58.95 Aligned_cols=238 Identities=11% Similarity=0.106 Sum_probs=160.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHhhcCcCCcccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHH
Q 044786 45 TLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVL 124 (340)
Q Consensus 45 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll 124 (340)
.+.+|..|..+..+.+++.+|++.| ++..|+..|..+|....+.|.+++-++.+...++. .-+..+=+.|+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~-------~ke~~IDteLi 123 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKK-------ARESYVETELI 123 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT-------CCSTTTTHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-------hcccccHHHHH
Confidence 3457778888888888888887754 44567778888999999999999888888777655 22333335688
Q ss_pred HHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHccc------------------------
Q 044786 125 KACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKR------------------------ 180 (340)
Q Consensus 125 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------------------------ 180 (340)
-+|++.+++.+.++++. .|+..-...+.+-|...|.++.|.-+|..+..
T Consensus 124 ~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKA 196 (624)
T 3lvg_A 124 FALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA 196 (624)
T ss_dssp HHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTC
T ss_pred HHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88888888776555432 35555556677777777888877777766542
Q ss_pred CChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCChhhHHHHHHhcccCCchhchHHHHHHHHHHhCC-CccHHHHHH
Q 044786 181 HNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIGL-ESDEYVQCG 259 (340)
Q Consensus 181 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 259 (340)
.++.||..+-.+|...+.+.-|.-.--.+. +.|| ....++..|...|.+++ ...+++.-. |. .....+|+-
T Consensus 197 ns~ktWKeV~~ACvd~~EfrLAqicGLniI---vhad--eL~elv~~YE~~G~f~E-LIsLlEagl--glErAHmGmFTE 268 (624)
T 3lvg_A 197 NSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHAD--ELEELINYYQDRGYFEE-LITMLEAAL--GLERAHMGMFTE 268 (624)
T ss_dssp CSSCSHHHHTHHHHHSCTTTTTTHHHHHHH---CCSS--CCSGGGSSSSTTCCCTT-STTTHHHHT--TSTTCCHHHHHH
T ss_pred CChhHHHHHHHHHhCchHHHHHHHhcchhc---ccHH--HHHHHHHHHHhCCCHHH-HHHHHHHHh--CCCchhHHHHHH
Confidence 267789999999999998887754433333 1232 23356777888898877 444444322 22 346778888
Q ss_pred HHHHHhccCCHHHHHHHHHHhhcC---C-------cHHHHHHHHHHHHHcCchHHHHH
Q 044786 260 LVDMYGKCRLLRDAERVFELIVDK---K-------NIASWNAMLVGYIRNGLYVEATK 307 (340)
Q Consensus 260 li~~~~~~~~~~~A~~~~~~~~~~---~-------~~~~~~~li~~~~~~~~~~~a~~ 307 (340)
|.-.|++- ++++..+-++..-.+ | ....|.-++-.|++-.+++.|..
T Consensus 269 LaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 269 LAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 88888875 444444444333222 2 44568888888888888887643
No 226
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.29 E-value=0.083 Score=34.98 Aligned_cols=28 Identities=7% Similarity=0.133 Sum_probs=16.8
Q ss_pred cHHHHHHHHHcccChhHHHHHHHHHHHh
Q 044786 79 SWAVMIVGYVDVADYQECITLFAEMMKR 106 (340)
Q Consensus 79 ~~~~li~~~~~~g~~~~a~~~~~~m~~~ 106 (340)
++..+..++.+.|+++.|...+++..+.
T Consensus 48 i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 48 VLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 3555555666666666666666666555
No 227
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.28 E-value=0.067 Score=38.14 Aligned_cols=80 Identities=13% Similarity=-0.068 Sum_probs=45.2
Q ss_pred hhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhcc---chhhHHHHHHHHHHcCCCC--chhHHHHHHHHHHhhcC
Q 044786 93 YQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTM---NMELGKQVHGLLFKLGSSR--NISLTGSLINFYGKFRC 167 (340)
Q Consensus 93 ~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~ 167 (340)
...+.+-|.+....+ .++..+...+..++++++ +++++..+++...+.. .| ....+..+.-+|.+.|+
T Consensus 14 l~~~~~~y~~e~~~~------~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~ 86 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG------SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKE 86 (152)
T ss_dssp HHHHHHHHHHHHHTT------CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHccC------CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccC
Confidence 344455555554443 355566666666666655 5667777777766654 22 23334444555566666
Q ss_pred HHHHHHHHHHcc
Q 044786 168 LEDADFVFSQLK 179 (340)
Q Consensus 168 ~~~a~~~~~~~~ 179 (340)
+++|.+.++.+.
T Consensus 87 Y~~A~~y~~~lL 98 (152)
T 1pc2_A 87 YEKALKYVRGLL 98 (152)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666666654
No 228
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.26 E-value=0.15 Score=33.74 Aligned_cols=69 Identities=9% Similarity=-0.024 Sum_probs=47.6
Q ss_pred HHHHHHHHHcccChhHHHHHHHHHHHhhcCCc-cccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCC
Q 044786 80 WAVMIVGYVDVADYQECITLFAEMMKRKKGHM-LLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGS 148 (340)
Q Consensus 80 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 148 (340)
+-.|...+.+.|++..|...|++..+...... .-.+...++..+..++.+.|+++.|...+++..+..+
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P 77 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP 77 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 45567777888888888888888776521100 0024556777788888888888888888887776643
No 229
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=94.95 E-value=1.6 Score=42.64 Aligned_cols=206 Identities=9% Similarity=-0.008 Sum_probs=97.3
Q ss_pred HHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCcC----Cc-------------
Q 044786 15 CLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLR----DF------------- 77 (340)
Q Consensus 15 ~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~------------- 77 (340)
.++..+...+..+.+.++..+. +-+....-.+..++...|++++|.++|++.... +.
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~------~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL------NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS------CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhc------cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccc
Confidence 3455555566666665544332 223333334556677888888888888776411 00
Q ss_pred ---------ccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCC
Q 044786 78 ---------NSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGS 148 (340)
Q Consensus 78 ---------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 148 (340)
.-|..++..+-+.+.++.+.++-....+.. +..........|..+.+++...|++++|...+-.+.....
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~-~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~ 969 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASK-ETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL 969 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHC-CSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-cCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH
Confidence 013444445555555555555544444432 1100000112345555555555555555555444433322
Q ss_pred CCchhHHHHHHHHHHhhcCHHHHHHHHHHcccCChhhHHHHHHHHhccCchhHHHHHHHHHhhcc--cCCChhhHHHHHH
Q 044786 149 SRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRER--IKKNSYTFSSVLK 226 (340)
Q Consensus 149 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~t~~~ll~ 226 (340)
+ ......|+...|..|..+.-.. +--.|..++..+++....+.. +.....-|..|-.
T Consensus 970 r--~~cLr~LV~~lce~~~~~~L~~-------------------lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs 1028 (1139)
T 4fhn_B 970 K--KSCLLDFVNQLTKQGKINQLLN-------------------YSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFS 1028 (1139)
T ss_dssp C--HHHHHHHHHHHHHHCCHHHHHH-------------------HTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHH
T ss_pred H--HHHHHHHHHHHHhCCChhhhhC-------------------CCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHh
Confidence 2 2233444444444444322111 112334444444443322211 1111122444444
Q ss_pred hcccCCchhchHHHHHHHHHHh
Q 044786 227 ACGGVDDDGNCGRQMHANIVKI 248 (340)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~ 248 (340)
-+...|++..||..+++...+.
T Consensus 1029 ~ri~r~dyR~AA~vmYe~~~RL 1050 (1139)
T 4fhn_B 1029 WRYKHQNYRDAAAIIYEKLSRY 1050 (1139)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHH
T ss_pred hhhccCChHHHHHHHHHHHHHh
Confidence 4566777778888888877654
No 230
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.75 E-value=0.66 Score=32.19 Aligned_cols=65 Identities=15% Similarity=-0.002 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhhc--CCcHHHHHHHHHHHHHcCchHHHHHHHHHHHHcCCc
Q 044786 254 EYVQCGLVDMYGKCRLLRDAERVFELIVD--KKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQ 318 (340)
Q Consensus 254 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 318 (340)
...+..-++.+...|+-+.-.++...+.. +|++...-.+..+|.+.|+..+|-+++.+..++|++
T Consensus 91 se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 91 NEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 34445667777888999999999999533 467888888999999999999999999999999976
No 231
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.54 E-value=0.095 Score=37.35 Aligned_cols=81 Identities=9% Similarity=0.078 Sum_probs=51.8
Q ss_pred cchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcC---ChhHHHHHHhhcCcCC-----cccHHHHHHHHHcccChhH
Q 044786 24 KDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCG---QLDTARQLFDEMPLRD-----FNSWAVMIVGYVDVADYQE 95 (340)
Q Consensus 24 ~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~ 95 (340)
.....+.+-|...... |. ++..+.-.+-.++++.+ +++++..+|+.+.+.+ ...+-.+.-++.+.|++++
T Consensus 12 ~~l~~~~~~y~~e~~~-~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHHHT-TC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHH
Confidence 3445555666655554 43 56666666666777766 5567777777766433 2234455566677788888
Q ss_pred HHHHHHHHHHh
Q 044786 96 CITLFAEMMKR 106 (340)
Q Consensus 96 a~~~~~~m~~~ 106 (340)
|.+.++.+++.
T Consensus 90 A~~y~~~lL~i 100 (152)
T 1pc2_A 90 ALKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 88888887777
No 232
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.30 E-value=0.21 Score=42.14 Aligned_cols=69 Identities=13% Similarity=0.123 Sum_probs=57.5
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhhc-CC-cHHHHHHHHHHHHHcCchHHHHHHHHHHHH-----cCCccchhHHH
Q 044786 257 QCGLVDMYGKCRLLRDAERVFELIVD-KK-NIASWNAMLVGYIRNGLYVEATKFLYLMKA-----SGIQIQESLIN 325 (340)
Q Consensus 257 ~~~li~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~~~~~t~~ 325 (340)
...++..+...|+.++|...++.+.. .| +...|..+|.+|.+.|+..+|++.|++... .|+.|++.+-.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 44677888899999999988887765 34 778999999999999999999999998754 49999887643
No 233
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.08 E-value=0.29 Score=39.01 Aligned_cols=89 Identities=10% Similarity=-0.009 Sum_probs=70.5
Q ss_pred hhHHHHHHhhcCcCCcc-----cHHHHHHHHHc-----ccChhHHHHHHHHHHHhhcCCccccc--hHHHHHHHHHHhhh
Q 044786 62 LDTARQLFDEMPLRDFN-----SWAVMIVGYVD-----VADYQECITLFAEMMKRKKGHMLLVF--PAWIIVCVLKACVC 129 (340)
Q Consensus 62 ~~~a~~~~~~~~~~~~~-----~~~~li~~~~~-----~g~~~~a~~~~~~m~~~~~~~~~~~~--~~~~~~~ll~~~~~ 129 (340)
...|...+++..+-|+. .|..+...|.. .|+.++|.+.|++.++. .| +..++......++.
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L-------nP~~~id~~v~YA~~l~~ 251 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY-------CSAHDPDHHITYADALCI 251 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH-------CCTTCSHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh-------CCCCCchHHHHHHHHHHH
Confidence 45677777777644443 78899999988 49999999999999999 45 36778888888888
Q ss_pred c-cchhhHHHHHHHHHHcCCC--CchhHHHH
Q 044786 130 T-MNMELGKQVHGLLFKLGSS--RNISLTGS 157 (340)
Q Consensus 130 ~-~~~~~a~~~~~~~~~~~~~--~~~~~~~~ 157 (340)
. |+.+++.+.+++..+.... |+....+.
T Consensus 252 ~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~ 282 (301)
T 3u64_A 252 PLNNRAGFDEALDRALAIDPESVPHNKLLVI 282 (301)
T ss_dssp TTTCHHHHHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred hcCCHHHHHHHHHHHHcCCCCCCCChhHHHH
Confidence 5 9999999999999998877 66544443
No 234
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=93.78 E-value=0.0056 Score=52.29 Aligned_cols=57 Identities=11% Similarity=0.169 Sum_probs=44.1
Q ss_pred CcchhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 044786 9 TTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQL 68 (340)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~ 68 (340)
|+..|..+|.++.+.|.+++-...+...++. .-.|. .=+.|+-+|++.+++.+.+++
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~-~ke~~--IDteLi~ayAk~~rL~elEef 138 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARKK-ARESY--VETELIFALAKTNRLAELEEF 138 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT-CCSTT--TTHHHHHHHHTSCSSSTTTST
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-hcccc--cHHHHHHHHHhhCcHHHHHHH
Confidence 6778899999999999999999988877765 44444 444889999999887665443
No 235
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.24 E-value=1.3 Score=40.80 Aligned_cols=52 Identities=15% Similarity=0.054 Sum_probs=42.9
Q ss_pred HHHhccCCHHHHHHHHHHhhc-CC-cHHHHHHHHHHHHHcCchHHHHHHHHHHH
Q 044786 262 DMYGKCRLLRDAERVFELIVD-KK-NIASWNAMLVGYIRNGLYVEATKFLYLMK 313 (340)
Q Consensus 262 ~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 313 (340)
+.+.+.|+++.|.++-++... .| +-.+|..|..+|.+.|+++.|+-.++.+.
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 345567899999999888765 35 67799999999999999999999888873
No 236
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.24 E-value=1.2 Score=31.56 Aligned_cols=37 Identities=5% Similarity=0.045 Sum_probs=24.8
Q ss_pred CCCcchhHHHHHHhhhccch------hhHHHHHHHHHhhcCCCCC
Q 044786 7 PITTDMYTCLIKECTFQKDS------AGAFELLNHIRKRVNIKPT 45 (340)
Q Consensus 7 ~~~~~~~~~li~~~~~~~~~------~~a~~~~~~m~~~~g~~~~ 45 (340)
+.|.++|-..+...-+.|+. ++..++|++.... ++|+
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~--~Pp~ 52 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA--LPPD 52 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH--SCGG
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc--CCcc
Confidence 34566676777776666777 6777777777665 6664
No 237
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.11 E-value=0.44 Score=40.19 Aligned_cols=67 Identities=7% Similarity=-0.023 Sum_probs=50.8
Q ss_pred HHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHH-----cCCCCchhH
Q 044786 82 VMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFK-----LGSSRNISL 154 (340)
Q Consensus 82 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~ 154 (340)
.++..+...|++++++..+..+.... +.+...+..+|.++.+.|+..+|.+.|+...+ .|+.|+..+
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~------P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEH------PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 34556677888888888888887774 56777888888888888888888888876643 488887655
No 238
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.92 E-value=1.6 Score=40.13 Aligned_cols=130 Identities=13% Similarity=0.028 Sum_probs=82.7
Q ss_pred HHHHHHHHHhcCC-hhHHHHHHhhcCcCCccc---H-HHHHHHHHccc-ChhHHHHHHHHHHHhh----cCCccc-----
Q 044786 49 LNRLLLMHVSCGQ-LDTARQLFDEMPLRDFNS---W-AVMIVGYVDVA-DYQECITLFAEMMKRK----KGHMLL----- 113 (340)
Q Consensus 49 ~~~li~~~~~~~~-~~~a~~~~~~~~~~~~~~---~-~~li~~~~~~g-~~~~a~~~~~~m~~~~----~~~~~~----- 113 (340)
...|+..+...++ .+.|..+|+++...++.. + ..++..+...+ +--+|.+++.+..+.- ...+..
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~ 330 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA 330 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence 3455555555666 588999999988655432 2 22333333333 2335666666655320 000000
Q ss_pred ---cchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHcc
Q 044786 114 ---VFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179 (340)
Q Consensus 114 ---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 179 (340)
+.+......-.+.|...|+++.|+++-++.+..-+. +-.+|..|..+|.+.|+++.|+-.++.++
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 011123333345566789999999999998887533 56799999999999999999999999875
No 239
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.34 E-value=4.9 Score=34.51 Aligned_cols=93 Identities=8% Similarity=-0.019 Sum_probs=48.0
Q ss_pred HHHHHHHHHhhhccchhhHHHHHHHHHHc--CCCCc---hhHHHHHHHHHHhhcCHHHHHHHHHHccc-----C-----C
Q 044786 118 WIIVCVLKACVCTMNMELGKQVHGLLFKL--GSSRN---ISLTGSLINFYGKFRCLEDADFVFSQLKR-----H-----N 182 (340)
Q Consensus 118 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~-----~ 182 (340)
.....|...+...|++.+|..++..+... +.... ...+...+..|...+++.+|..+++++.. + -
T Consensus 138 rl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk 217 (445)
T 4b4t_P 138 RVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLK 217 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHH
Confidence 34455556666666666666666555422 21111 22444555666666666666665555421 0 1
Q ss_pred hhhHHHHHHHHhccCchhHHHHHHHHHh
Q 044786 183 TVVWTAKIVNNCREGHFHQVFNDFKEMG 210 (340)
Q Consensus 183 ~~~~~~li~~~~~~~~~~~a~~~~~~m~ 210 (340)
...+..++..+...+++.+|...|.+..
T Consensus 218 ~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 218 LEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 1234455555555666666666655554
No 240
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=92.33 E-value=2.1 Score=30.29 Aligned_cols=33 Identities=6% Similarity=0.205 Sum_probs=23.5
Q ss_pred cCCcccHHHHHHHHHcccCh------hHHHHHHHHHHHh
Q 044786 74 LRDFNSWAVMIVGYVDVADY------QECITLFAEMMKR 106 (340)
Q Consensus 74 ~~~~~~~~~li~~~~~~g~~------~~a~~~~~~m~~~ 106 (340)
..|..+|-..+...-+.|++ ++..++|++....
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~ 48 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA 48 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc
Confidence 34666777777777667777 7777888877766
No 241
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.92 E-value=8.8 Score=37.52 Aligned_cols=52 Identities=13% Similarity=0.077 Sum_probs=35.1
Q ss_pred HHHHHHHhcCChhHHHHHHhhcCcCCcccHHHHHHHHHcccChhHHHHHHHHH
Q 044786 51 RLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEM 103 (340)
Q Consensus 51 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 103 (340)
.++..+.+.+..+.+.++.... +.+...--.+..++...|++++|.+.|.+.
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-~~~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-NSDPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-cCCcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3455566667777777655444 344444445667788899999999999764
No 242
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=91.64 E-value=0.94 Score=31.00 Aligned_cols=22 Identities=14% Similarity=0.252 Sum_probs=11.3
Q ss_pred HHHHhccCchhHHHHHHHHHhh
Q 044786 190 IVNNCREGHFHQVFNDFKEMGR 211 (340)
Q Consensus 190 i~~~~~~~~~~~a~~~~~~m~~ 211 (340)
.-++.+.|++++|.+.++.+.+
T Consensus 81 Avg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 81 AVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHH
Confidence 3344455555555555555544
No 243
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.71 E-value=7.4 Score=33.39 Aligned_cols=98 Identities=8% Similarity=0.053 Sum_probs=58.6
Q ss_pred HHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHH----cCCCCc--hhH
Q 044786 81 AVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFK----LGSSRN--ISL 154 (340)
Q Consensus 81 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~--~~~ 154 (340)
..|...+...|++.+|.+++..+...-.|.....--...+...++.|...+++..|..++..+.. ....|+ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 34566677777777777777777776544422111234566666777777777777777766532 122222 234
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHc
Q 044786 155 TGSLINFYGKFRCLEDADFVFSQL 178 (340)
Q Consensus 155 ~~~l~~~~~~~~~~~~a~~~~~~~ 178 (340)
|...+..+...+++.+|.+.|.+.
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHH
Confidence 455666666677777776665544
No 244
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=89.61 E-value=0.82 Score=29.70 Aligned_cols=62 Identities=10% Similarity=0.086 Sum_probs=48.7
Q ss_pred chhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCc---CCcccHHHHHHHH
Q 044786 25 DSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPL---RDFNSWAVMIVGY 87 (340)
Q Consensus 25 ~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~ 87 (340)
|.=+..+-+..+... .+-|++.+..+.+.+|-|.+++..|.++|+.++. ....+|..++.-.
T Consensus 25 D~~e~rrglN~l~~~-DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lqEl 89 (109)
T 1v54_E 25 DAWELRKGMNTLVGY-DLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQEL 89 (109)
T ss_dssp CHHHHHHHHHHHTTS-SBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcc-ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 444566667777766 7899999999999999999999999999998872 2344688777643
No 245
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=89.48 E-value=3 Score=26.99 Aligned_cols=87 Identities=10% Similarity=-0.001 Sum_probs=65.6
Q ss_pred ccchhhHHHHHHHHHhhcCCCCCHHHHHHHH--HHHHhcCChhHHHHHHhhcCcCCcccHHHHHHHHHcccChhHHHHHH
Q 044786 23 QKDSAGAFELLNHIRKRVNIKPTLLFLNRLL--LMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLF 100 (340)
Q Consensus 23 ~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 100 (340)
....++|..+-+++... +- .-...+| ..+...|++++|..+.+....||..+|-+|-. .+.|..+++...+
T Consensus 19 ~H~HqEA~tIAdwL~~~-~~----~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL 91 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERL-GQ----DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRL 91 (115)
T ss_dssp TTCHHHHHHHHHHHHHT-TC----HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhC-Cc----HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHH
Confidence 34788999999999877 43 3333444 45678899999999999999999999887754 5778888888888
Q ss_pred HHHHHhhcCCccccchHHHHHH
Q 044786 101 AEMMKRKKGHMLLVFPAWIIVC 122 (340)
Q Consensus 101 ~~m~~~~~~~~~~~~~~~~~~~ 122 (340)
.++-..| .|....|..
T Consensus 92 ~~la~sg------~p~~q~Fa~ 107 (115)
T 2uwj_G 92 AGLGGSS------DPALADFAA 107 (115)
T ss_dssp HHHHTCS------SHHHHHHHH
T ss_pred HHHHhCC------CHHHHHHHH
Confidence 7887765 465555543
No 246
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=89.28 E-value=7.6 Score=31.40 Aligned_cols=149 Identities=13% Similarity=0.071 Sum_probs=88.0
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHcccCChhhHHHHHHHHhccCchhHHHHH----HHHHhhcccCCChhhHHHHHHhcc
Q 044786 154 LTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFND----FKEMGRERIKKNSYTFSSVLKACG 229 (340)
Q Consensus 154 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~----~~~m~~~~~~p~~~t~~~ll~~~~ 229 (340)
.|.++..=|.+.+++++|.+++..- ...+.+.|+...|.++ ++-..+.+++++......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4455666677888888888875532 2334455665555554 444555678888777777776665
Q ss_pred cCCchh----chHHHHHHHHHHhCCC--ccHHHHHHHHHHHhccCCHHHHHHHHHHhh----------------cC--Cc
Q 044786 230 GVDDDG----NCGRQMHANIVKIGLE--SDEYVQCGLVDMYGKCRLLRDAERVFELIV----------------DK--KN 285 (340)
Q Consensus 230 ~~~~~~----~~~~~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~~~----------------~~--~~ 285 (340)
.....+ +.......+..+.|-. -++.....+...|.+.|++.+|+.-|-.-. .. ..
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~ 183 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIE 183 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCC
Confidence 433221 2233444444454432 277778888889999999999888663110 11 11
Q ss_pred HHHH----HHHHHHHHHcCchHHHHHHHHHHH
Q 044786 286 IASW----NAMLVGYIRNGLYVEATKFLYLMK 313 (340)
Q Consensus 286 ~~~~----~~li~~~~~~~~~~~a~~~~~~m~ 313 (340)
.... ...+-.|.-.|+...|..+++...
T Consensus 184 ~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 184 DSTVAEFFSRLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 1111 122334556778888888877764
No 247
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=89.13 E-value=3.2 Score=26.89 Aligned_cols=87 Identities=9% Similarity=0.037 Sum_probs=64.7
Q ss_pred ccchhhHHHHHHHHHhhcCCCCCHHHHHHHH--HHHHhcCChhHHHHHHhhcCcCCcccHHHHHHHHHcccChhHHHHHH
Q 044786 23 QKDSAGAFELLNHIRKRVNIKPTLLFLNRLL--LMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLF 100 (340)
Q Consensus 23 ~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 100 (340)
....++|..+-+++... +- .-...|| ..+...|++++|..+.+....||..+|-+|-. .+.|..+++...+
T Consensus 20 ~H~HqEA~tIAdwL~~~-~~----~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL 92 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLK-GE----EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRL 92 (116)
T ss_dssp TTCHHHHHHHHHHHHHT-TC----HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhC-Cc----HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHH
Confidence 44788999999999877 43 3333444 45678899999999999999999999887754 4677778888777
Q ss_pred HHHHHhhcCCccccchHHHHHH
Q 044786 101 AEMMKRKKGHMLLVFPAWIIVC 122 (340)
Q Consensus 101 ~~m~~~~~~~~~~~~~~~~~~~ 122 (340)
.++-..| .|....|..
T Consensus 93 ~~la~sg------~p~~q~Fa~ 108 (116)
T 2p58_C 93 NRLARSQ------DPRIQTFVN 108 (116)
T ss_dssp HHHTTCC------CHHHHHHHH
T ss_pred HHHHhCC------CHHHHHHHH
Confidence 7776664 455555443
No 248
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=88.49 E-value=3.7 Score=26.74 Aligned_cols=57 Identities=14% Similarity=0.153 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhcC--CcHHHHHHHHH
Q 044786 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK--KNIASWNAMLV 294 (340)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~li~ 294 (340)
...-++.+....+-|++.+..+.+++|-+.+++..|.++|+.++.+ +...+|..+++
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq 87 (109)
T 1v54_E 29 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 5555666667778888888888888888888888888888888763 23334555543
No 249
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=87.65 E-value=5.1 Score=27.39 Aligned_cols=89 Identities=10% Similarity=0.068 Sum_probs=58.3
Q ss_pred HHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhH---HHHHHhhcCcCC-c----ccHHHHHHHH
Q 044786 16 LIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDT---ARQLFDEMPLRD-F----NSWAVMIVGY 87 (340)
Q Consensus 16 li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~---a~~~~~~~~~~~-~----~~~~~li~~~ 87 (340)
++..-........+.+-|...... |. |+..+--.+..++.+.++... ++.+++.+...+ + ...-.|.-++
T Consensus 7 ~l~~~~~~~~l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~ 84 (126)
T 1nzn_A 7 VLNELVSVEDLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 84 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHhccCCHHHHHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 344444445566666666666655 44 566666666667777766555 778888777544 2 1233456677
Q ss_pred HcccChhHHHHHHHHHHHh
Q 044786 88 VDVADYQECITLFAEMMKR 106 (340)
Q Consensus 88 ~~~g~~~~a~~~~~~m~~~ 106 (340)
.+.|++++|.+.++.+++.
T Consensus 85 yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 85 YRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHh
Confidence 8888888888888888887
No 250
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=87.17 E-value=11 Score=30.77 Aligned_cols=113 Identities=12% Similarity=-0.006 Sum_probs=67.7
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHcccCChhhHHHHHHHHhccCchhHHHHHH----HHHhhcccCCChhhHHHHHHhcc
Q 044786 154 LTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDF----KEMGRERIKKNSYTFSSVLKACG 229 (340)
Q Consensus 154 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~----~~m~~~~~~p~~~t~~~ll~~~~ 229 (340)
+|.++..=|.+.+++++|.+++..- ...+.+.|+...|.++- +-..+.++++|......++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4455666677888888888775431 23344455555444443 44455677777777766666665
Q ss_pred cCCchh----chHHHHHHHHHHhCCCc--cHHHHHHHHHHHhccCCHHHHHHHH
Q 044786 230 GVDDDG----NCGRQMHANIVKIGLES--DEYVQCGLVDMYGKCRLLRDAERVF 277 (340)
Q Consensus 230 ~~~~~~----~~~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~A~~~~ 277 (340)
....-+ ........+-.+.|-.| ++..-..+...|.+.+++.+|+.-|
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 544321 11223334444544333 6667777888888888888887765
No 251
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=87.13 E-value=17 Score=32.77 Aligned_cols=269 Identities=9% Similarity=-0.019 Sum_probs=136.9
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCcCCcccHHHHHHHHHcccChhHHHHHHHHHHHhhcCC
Q 044786 31 ELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGH 110 (340)
Q Consensus 31 ~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 110 (340)
++-..+.+..+.+.....-+.-+..+.+.+++......+.. ...+...-.....+....|+..+|......+-..+
T Consensus 57 ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~--- 132 (618)
T 1qsa_A 57 TVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG--- 132 (618)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS---
T ss_pred HHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC---
Confidence 34444444323333334445666667777788877776665 33344444456667777788777777666666554
Q ss_pred ccccchHHHHHHHHHHhhhccchhhH--HHHHHHHHHcC-----------CCCchh-HHHHHHHHHHhhcCHHHHHHHHH
Q 044786 111 MLLVFPAWIIVCVLKACVCTMNMELG--KQVHGLLFKLG-----------SSRNIS-LTGSLINFYGKFRCLEDADFVFS 176 (340)
Q Consensus 111 ~~~~~~~~~~~~ll~~~~~~~~~~~a--~~~~~~~~~~~-----------~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~ 176 (340)
......+..++..+.+.|.+... .+=++.+...| +.++.. ....++..+. +...+.....
T Consensus 133 ---~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~---~p~~~~~~~~ 206 (618)
T 1qsa_A 133 ---KSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTFAR 206 (618)
T ss_dssp ---SCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHHHH
T ss_pred ---CCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHh---ChHhHHHHHh
Confidence 33344556666666655544332 12122222222 111110 0111111111 1111122211
Q ss_pred HcccCChh---hHHHHHHHHhccCchhHHHHHHHHHhhcc-cCCCh--hhHHHHHHhcccCCchhchHHHHHHHHHHhCC
Q 044786 177 QLKRHNTV---VWTAKIVNNCREGHFHQVFNDFKEMGRER-IKKNS--YTFSSVLKACGGVDDDGNCGRQMHANIVKIGL 250 (340)
Q Consensus 177 ~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~--~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (340)
.. .++.. .+..-+.-+.+ .+.+.|...+....... +.+.. .....+.......+...+ +...+......
T Consensus 207 ~~-~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~-~~~~~~~~~~~-- 281 (618)
T 1qsa_A 207 TT-GATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDE-QAKWRDDAIMR-- 281 (618)
T ss_dssp HS-CCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHH-HHHHHHHHHHT--
T ss_pred cc-CCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChH-HHHHHHhcccc--
Confidence 11 11111 11112333333 37799999998886543 22221 123344445555562224 33344333332
Q ss_pred CccHHHHHHHHHHHhccCCHHHHHHHHHHhhcCC-cHHHH-HHHHHHHHHcCchHHHHHHHHHHHH
Q 044786 251 ESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKK-NIASW-NAMLVGYIRNGLYVEATKFLYLMKA 314 (340)
Q Consensus 251 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~-~~~~~-~~li~~~~~~~~~~~a~~~~~~m~~ 314 (340)
.++.......+....+.|+++.|.+.|+.|...+ +..-| -=+..++...|+.++|..+|+++..
T Consensus 282 ~~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 282 SQSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp CCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCChHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 2344444555666668899999999999997542 22211 1234577789999999999999864
No 252
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.18 E-value=6.6 Score=33.50 Aligned_cols=97 Identities=7% Similarity=0.021 Sum_probs=53.7
Q ss_pred cHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHc---CCCCchhHH
Q 044786 79 SWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKL---GSSRNISLT 155 (340)
Q Consensus 79 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~ 155 (340)
++..+..-|.+.|++++|.+.|.++...-.+. .--...+-.+++.+...+++..+...+...... +..|+...-
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~---~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~ 209 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAIST---GAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNR 209 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCC---CSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCh---HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHH
Confidence 45566666667777777777777766654333 555566666667777777777777666655432 222222110
Q ss_pred --HHHHHHHHhhcCHHHHHHHHHHc
Q 044786 156 --GSLINFYGKFRCLEDADFVFSQL 178 (340)
Q Consensus 156 --~~l~~~~~~~~~~~~a~~~~~~~ 178 (340)
..-.-.+...+++..|...|-+.
T Consensus 210 lk~~~gl~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 210 YKTYYGIHCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHHHHHGGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHH
Confidence 11111233456666666665553
No 253
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=86.05 E-value=5.9 Score=27.38 Aligned_cols=56 Identities=14% Similarity=0.165 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhcC--CcHHHHHHHH
Q 044786 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDK--KNIASWNAML 293 (340)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~li 293 (340)
...-++.+....+-|++.+..+-+++|-+.+++..|.++|+.++.+ +...+|..++
T Consensus 72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~l 129 (152)
T 2y69_E 72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 4455556666677888888888888888888888888888888763 3334455554
No 254
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=85.97 E-value=14 Score=30.96 Aligned_cols=167 Identities=13% Similarity=0.020 Sum_probs=97.9
Q ss_pred hhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCC---HHHHHHHHHHHHhc-CChhHHHHHHhhcC---cCCcccH----
Q 044786 12 MYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPT---LLFLNRLLLMHVSC-GQLDTARQLFDEMP---LRDFNSW---- 80 (340)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~---~~~~~~li~~~~~~-~~~~~a~~~~~~~~---~~~~~~~---- 80 (340)
+...+...|.+.|+.++..+++.......+.-|- ......+++.+... +..+.-.++..+.. ...-.+|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~ 100 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777788888888888888877654333332 34456777777664 33333333333222 1111223
Q ss_pred --HHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHc--CCCCchhHHH
Q 044786 81 --AVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKL--GSSRNISLTG 156 (340)
Q Consensus 81 --~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~ 156 (340)
.-++..|...|++.+|.+++.++.+.=...+.-..-..++..-+..|...+++..+...+...... .+.+++.+..
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a 180 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQG 180 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHH
Confidence 247788888899999988888888752222111223346667777788888888888888766533 2223333322
Q ss_pred H----HHHHHH-hhcCHHHHHHHHHHc
Q 044786 157 S----LINFYG-KFRCLEDADFVFSQL 178 (340)
Q Consensus 157 ~----l~~~~~-~~~~~~~a~~~~~~~ 178 (340)
. -.-.+. ..+++..|...|-+.
T Consensus 181 ~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 181 ALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 1 122344 567788777766553
No 255
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=84.30 E-value=9.5 Score=27.45 Aligned_cols=66 Identities=6% Similarity=-0.050 Sum_probs=36.2
Q ss_pred cHHHHHHHHHcccChhHHHHHHHHHHHhhc-CCccccch--HHHHHHHHHHhhhccchhhHHHHHHHHH
Q 044786 79 SWAVMIVGYVDVADYQECITLFAEMMKRKK-GHMLLVFP--AWIIVCVLKACVCTMNMELGKQVHGLLF 144 (340)
Q Consensus 79 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 144 (340)
.+-.-+..+...+.++.|+-+.+.+..... ..+.+.|. ..++..+..++...+++..|...|++.+
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 344445566666777777666666544320 11001111 1255566677777777777777777654
No 256
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=81.62 E-value=9.7 Score=26.33 Aligned_cols=32 Identities=9% Similarity=0.184 Sum_probs=15.9
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHhhcC
Q 044786 42 IKPTLLFLNRLLLMHVSCGQLDTARQLFDEMP 73 (340)
Q Consensus 42 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 73 (340)
+-|++.+..+.+.+|-|.+++..|.++|+.++
T Consensus 84 lVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK 115 (152)
T 2y69_E 84 LVPEPKIIDAALRACRRLNDFASAVRILEVVK 115 (152)
T ss_dssp BCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 44455555555555555555555555554443
No 257
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.29 E-value=10 Score=32.33 Aligned_cols=95 Identities=3% Similarity=-0.124 Sum_probs=69.8
Q ss_pred HHHHHHHHHhhhccchhhHHHHHHHHHHcC--CCCchhHHHHHHHHHHhhcCHHHHHHHHHHccc-----CChhhHH---
Q 044786 118 WIIVCVLKACVCTMNMELGKQVHGLLFKLG--SSRNISLTGSLINFYGKFRCLEDADFVFSQLKR-----HNTVVWT--- 187 (340)
Q Consensus 118 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~--- 187 (340)
.+...+...+.+.|+++.|.+.+.++.... ...-...+-.++..+...+++..+...+++... ++....+
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 356678899999999999999999998753 334456788899999999999999998888642 1222111
Q ss_pred -HHHHHHhccCchhHHHHHHHHHhhc
Q 044786 188 -AKIVNNCREGHFHQVFNDFKEMGRE 212 (340)
Q Consensus 188 -~li~~~~~~~~~~~a~~~~~~m~~~ 212 (340)
.-...+...+++.+|...|-+....
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1122344678999999998887653
No 258
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=79.77 E-value=24 Score=28.87 Aligned_cols=45 Identities=9% Similarity=-0.008 Sum_probs=24.1
Q ss_pred ChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCChhhHHHHHHhccc
Q 044786 182 NTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230 (340)
Q Consensus 182 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 230 (340)
|......+...|.+.+++.+|...|- .|-.++..+|..++..+..
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~ 179 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYK 179 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHH
Confidence 44455566667777777777766651 1223333455444444433
No 259
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=79.64 E-value=26 Score=29.38 Aligned_cols=126 Identities=8% Similarity=-0.025 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHhhcCc--------CCcccHHHHHHHHHcc-cChhHHHHHHHHHHHhhcCCccccchH
Q 044786 47 LFLNRLLLMHVSCGQLDTARQLFDEMPL--------RDFNSWAVMIVGYVDV-ADYQECITLFAEMMKRKKGHMLLVFPA 117 (340)
Q Consensus 47 ~~~~~li~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~ 117 (340)
.....|...|.+.|+.++..+++..... +.......++..+... +..+.-.++..+..+.. .-..
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a------~~~~ 93 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA------KQEK 93 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH------HHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH------HHHH
Confidence 3456778888999999999888887652 1222455666666654 34444555555555553 2222
Q ss_pred HHH------HHHHHHhhhccchhhHHHHHHHHHHcCCCCc-----hhHHHHHHHHHHhhcCHHHHHHHHHHc
Q 044786 118 WII------VCVLKACVCTMNMELGKQVHGLLFKLGSSRN-----ISLTGSLINFYGKFRCLEDADFVFSQL 178 (340)
Q Consensus 118 ~~~------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~ 178 (340)
.+| .-++..|...|++.+|.+++..+.+.--..| ..+|..-+..|...+++.++...+...
T Consensus 94 r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a 165 (394)
T 3txn_A 94 RTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSA 165 (394)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 333 1456666677777777666666654321111 223444555666666666666666544
No 260
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=79.36 E-value=23 Score=28.59 Aligned_cols=132 Identities=9% Similarity=-0.044 Sum_probs=73.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHhhcCcCCcccHHHHHHHHHcccChhHHHHHH----HHHHHhhcCCccccchHHHHHHH
Q 044786 48 FLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLF----AEMMKRKKGHMLLVFPAWIIVCV 123 (340)
Q Consensus 48 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~----~~m~~~~~~~~~~~~~~~~~~~l 123 (340)
.|.++..=|.+.+++++|.+++..- ...+.+.|+...|-++- +...+. ++ +++......+
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~--~~---~~~~~~~~rl 98 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLA--EV---KVDDISVARL 98 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHT--TC---CCSHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHc--CC---CCCHHHHHHH
Confidence 4445555577778888888874332 22344556665555543 222333 33 5666666666
Q ss_pred HHHhhhccchh-hHHHHHHHHH----HcCC--CCchhHHHHHHHHHHhhcCHHHHHHHHHHcccCChhhHHHHHHHHhc
Q 044786 124 LKACVCTMNME-LGKQVHGLLF----KLGS--SRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCR 195 (340)
Q Consensus 124 l~~~~~~~~~~-~a~~~~~~~~----~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~ 195 (340)
+..+.....-+ .-.++.+.+. +.|- .-++.....+...|.+.+++.+|+..|-.-...+...+..++.-+..
T Consensus 99 ~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~ 177 (312)
T 2wpv_A 99 VRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLC 177 (312)
T ss_dssp HHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHH
Confidence 66554432111 1223333333 2322 23677888889999999999999888763332245555555444433
No 261
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=79.34 E-value=19 Score=27.90 Aligned_cols=79 Identities=13% Similarity=0.004 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhCCCccHHH--HHHHHHHHhccCCHHHHHHHHHHhhcC---CcHHHHHHHHHHHHHcCchHHHHHHHHHH
Q 044786 238 GRQMHANIVKIGLESDEYV--QCGLVDMYGKCRLLRDAERVFELIVDK---KNIASWNAMLVGYIRNGLYVEATKFLYLM 312 (340)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m 312 (340)
...+.+.+.+.|..++... -.+.+...++.|+.+-+..+++..... .|..-.+.+- .-++.|+. ++.+-+
T Consensus 198 ~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~-~A~~~~~~----~i~~~L 272 (285)
T 1wdy_A 198 VEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALL-LAVELKLK----KIAELL 272 (285)
T ss_dssp HHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHH-HHHHTTCH----HHHHHH
T ss_pred HHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHH-HHHHcCcH----HHHHHH
Confidence 4556666666666554321 123344555667777777776632221 1222222222 22334444 344555
Q ss_pred HHcCCccch
Q 044786 313 KASGIQIQE 321 (340)
Q Consensus 313 ~~~g~~~~~ 321 (340)
.+.|..|+.
T Consensus 273 l~~Ga~~~~ 281 (285)
T 1wdy_A 273 CKRGASTDC 281 (285)
T ss_dssp HHHSSCSCC
T ss_pred HHcCCCCCc
Confidence 556766553
No 262
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=79.28 E-value=26 Score=29.00 Aligned_cols=82 Identities=7% Similarity=0.085 Sum_probs=44.4
Q ss_pred HHHHHHHHhccCchhHHHHHHHHHhhcccCCChhhHHHHHHhcccCCc-hhchHHHHHHHHHHhCCCccHHHHHHHHHHH
Q 044786 186 WTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDD-DGNCGRQMHANIVKIGLESDEYVQCGLVDMY 264 (340)
Q Consensus 186 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 264 (340)
.+.++.-|...|+.++|...++++......+ ......+..++-+.++ -.+....++..+...|+-+.......+...+
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhh-e~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~vl 298 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIY 298 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHH-HHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchH-HHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 4566777777777777777777775321111 2233444444444322 2233555666666666666655555555555
Q ss_pred hccC
Q 044786 265 GKCR 268 (340)
Q Consensus 265 ~~~~ 268 (340)
....
T Consensus 299 ~~ld 302 (358)
T 3eiq_C 299 NEIP 302 (358)
T ss_dssp HHHH
T ss_pred Hhcc
Confidence 5433
No 263
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=78.40 E-value=18 Score=26.80 Aligned_cols=153 Identities=8% Similarity=0.001 Sum_probs=71.5
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHhhcCcCCcccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHH
Q 044786 44 PTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCV 123 (340)
Q Consensus 44 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~l 123 (340)
++...-...+..+.+.+..+....+.+.+..++...-...+.++.+.++.+ +...+..+.. .++..+-...
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~--------~~~~~vr~~a 101 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-AVEPLIKALK--------DEDGWVRQSA 101 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT--------CSSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc--------CCCHHHHHHH
Confidence 355555566666666666555555555555555555555555555555432 2233333322 2444444555
Q ss_pred HHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHcccCChhhHHHHHHHHhccCchhHHH
Q 044786 124 LKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVF 203 (340)
Q Consensus 124 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 203 (340)
+.++.+.++.+....+.+ +. -.++..+-...+.++.+.++.+....+.+.+..++..+-...+.++.+.+. .++.
T Consensus 102 ~~aL~~~~~~~~~~~L~~-~l---~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~ 176 (211)
T 3ltm_A 102 AVALGQIGDERAVEPLIK-AL---KDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVR 176 (211)
T ss_dssp HHHHHHHCCGGGHHHHHH-HT---TCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHH
T ss_pred HHHHHHhCcHHHHHHHHH-HH---hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHH
Confidence 555555554333222222 22 134444445555555555554333333333444444444444444444443 3333
Q ss_pred HHHHHHh
Q 044786 204 NDFKEMG 210 (340)
Q Consensus 204 ~~~~~m~ 210 (340)
..+.++.
T Consensus 177 ~~L~~~l 183 (211)
T 3ltm_A 177 AAMEKLA 183 (211)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444443
No 264
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=78.23 E-value=4.9 Score=27.63 Aligned_cols=66 Identities=12% Similarity=0.066 Sum_probs=38.9
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhhcC--CcHHHHHHHHHHHHHcC--chHHHHHHHHHHHHcCCccchh
Q 044786 257 QCGLVDMYGKCRLLRDAERVFELIVDK--KNIASWNAMLVGYIRNG--LYVEATKFLYLMKASGIQIQES 322 (340)
Q Consensus 257 ~~~li~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~g~~~~~~ 322 (340)
...++.-|...|+.++|.+.++++..+ ....+...+..++-+.+ ..+.+..++..+...|+-+...
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q 79 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 79 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 345777777888888888888887532 12233344444444433 2355666777777666544443
No 265
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=77.34 E-value=14 Score=25.37 Aligned_cols=22 Identities=18% Similarity=0.329 Sum_probs=11.5
Q ss_pred HHHHHHHcccChhHHHHHHHHH
Q 044786 82 VMIVGYVDVADYQECITLFAEM 103 (340)
Q Consensus 82 ~li~~~~~~g~~~~a~~~~~~m 103 (340)
.++.-|...|+.++|.+.++++
T Consensus 12 ~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 12 MLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHh
Confidence 3444555555555555555554
No 266
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=76.95 E-value=16 Score=25.24 Aligned_cols=66 Identities=14% Similarity=-0.076 Sum_probs=38.9
Q ss_pred cchHHHHHHHHHHhhhcc---chhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHcc
Q 044786 114 VFPAWIIVCVLKACVCTM---NMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179 (340)
Q Consensus 114 ~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 179 (340)
.|+..+-.....++.++. +...+..+++.+.+.+..-.....-.|.-++.+.|++++|.+..+.+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL 105 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 105 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 345554444444444443 556777777777766532234444556666777777777777766654
No 267
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=76.37 E-value=12 Score=30.71 Aligned_cols=23 Identities=4% Similarity=0.024 Sum_probs=12.9
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHH
Q 044786 155 TGSLINFYGKFRCLEDADFVFSQ 177 (340)
Q Consensus 155 ~~~l~~~~~~~~~~~~a~~~~~~ 177 (340)
...++..+.+....+.+.++|.+
T Consensus 144 l~~vl~~l~~~~g~~~l~~~~~~ 166 (339)
T 1ug3_A 144 LLEILGLLCKSMGPKKVGTLWRE 166 (339)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCHHHHHHHHHH
Confidence 34445555555556666666654
No 268
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=75.96 E-value=16 Score=26.36 Aligned_cols=94 Identities=6% Similarity=-0.083 Sum_probs=61.8
Q ss_pred HHHHHHHHHhhhccchhhHHHHHHHHHHcC-CCCch-------hHHHHHHHHHHhhcCHHHHHHHHHHccc--------C
Q 044786 118 WIIVCVLKACVCTMNMELGKQVHGLLFKLG-SSRNI-------SLTGSLINFYGKFRCLEDADFVFSQLKR--------H 181 (340)
Q Consensus 118 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~ 181 (340)
+.+..-++.+...+.++.|+-+.+.+.... -.|+. .++..+.+++...+++..|...|++..+ +
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 355566777778888888888877655432 12221 2566788899999999999999988431 1
Q ss_pred Ch--------------------hhHHHHHHHHhccCchhHHHHHHHHHhh
Q 044786 182 NT--------------------VVWTAKIVNNCREGHFHQVFNDFKEMGR 211 (340)
Q Consensus 182 ~~--------------------~~~~~li~~~~~~~~~~~a~~~~~~m~~ 211 (340)
+. ..---+-.+|.+.+++++|+.+++.+..
T Consensus 101 s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 101 KVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp ----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred CccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 11 1112255677778888888887766543
No 269
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=75.41 E-value=14 Score=23.96 Aligned_cols=84 Identities=12% Similarity=-0.009 Sum_probs=59.0
Q ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhcCCcHHHHHHHHHHHHHcCchHHHHHHHHHHHHcCC
Q 044786 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGI 317 (340)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 317 (340)
+..|-+.+...+- ...+-.+=+..+...|++++|..+.+..- -||...|-+| +-.+.|-.+++...+.++..+|
T Consensus 25 A~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-~pdlepw~AL--ce~rlGl~s~le~rL~~la~sg- 98 (115)
T 2uwj_G 25 ALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP-WPALEPWFAL--CEWHLGLGAALDRRLAGLGGSS- 98 (115)
T ss_dssp HHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC-CGGGHHHHHH--HHHHTTCHHHHHHHHHHHHTCS-
T ss_pred HHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC-CchHHHHHHH--HHHhcccHHHHHHHHHHHHhCC-
Confidence 6677777776654 33333334456778899999999888775 6899988776 4457888888888888887776
Q ss_pred ccchhHHHHH
Q 044786 318 QIQESLINDL 327 (340)
Q Consensus 318 ~~~~~t~~~l 327 (340)
.|....|..=
T Consensus 99 ~p~~q~Fa~g 108 (115)
T 2uwj_G 99 DPALADFAAG 108 (115)
T ss_dssp SHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 5555555443
No 270
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=75.31 E-value=6.2 Score=28.03 Aligned_cols=65 Identities=12% Similarity=0.066 Sum_probs=36.9
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhhcC--CcHHHHHHHHHHHHHcC--chHHHHHHHHHHHHcCCccch
Q 044786 257 QCGLVDMYGKCRLLRDAERVFELIVDK--KNIASWNAMLVGYIRNG--LYVEATKFLYLMKASGIQIQE 321 (340)
Q Consensus 257 ~~~li~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~g~~~~~ 321 (340)
.+.++.-|...|+.++|.+.++++..+ ....+...+..++-+.+ ..+.+..++..+...|+-+..
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~ 80 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 80 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 345677777778888888888877532 12233344444444422 234566667777666654443
No 271
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=75.03 E-value=22 Score=26.06 Aligned_cols=48 Identities=8% Similarity=-0.019 Sum_probs=20.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHhhcCcCCcccHHHHHHHHHcccC
Q 044786 45 TLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVAD 92 (340)
Q Consensus 45 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~ 92 (340)
+..+-...+..+.+.+..+....+.+.+..++...-...+.++...|.
T Consensus 27 ~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~ 74 (201)
T 3ltj_A 27 SYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGD 74 (201)
T ss_dssp CHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC
Confidence 344444444444444443444444444444444443444444444444
No 272
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=74.70 E-value=28 Score=27.16 Aligned_cols=47 Identities=9% Similarity=-0.077 Sum_probs=23.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHhhcCcCCcccHHHHHHHHHccc
Q 044786 45 TLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVA 91 (340)
Q Consensus 45 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g 91 (340)
+..+-...+..+.+.|..+....+.+.+..++...-...+.++...|
T Consensus 36 ~~~vr~~A~~~L~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~ 82 (280)
T 1oyz_A 36 NSLKRISSARVLQLRGGQDAVRLAIEFCSDKNYIRRDIGAFILGQIK 82 (280)
T ss_dssp SHHHHHHHHHHHHHHCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 44444455555555554443334444444455444444555555555
No 273
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=74.64 E-value=15 Score=23.89 Aligned_cols=84 Identities=14% Similarity=-0.003 Sum_probs=58.2
Q ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhcCCcHHHHHHHHHHHHHcCchHHHHHHHHHHHHcCC
Q 044786 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGI 317 (340)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 317 (340)
+..|-+.+...+- ...+-.+=+..+...|++++|..+.+..- -||...|-+| +-.+.|-.+++...+.++..+|
T Consensus 26 A~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-~pdlepw~AL--ce~rlGl~s~le~rL~~la~sg- 99 (116)
T 2p58_C 26 ANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA-YPDLEPWLAL--CEYRLGLGSALESRLNRLARSQ- 99 (116)
T ss_dssp HHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC-CGGGHHHHHH--HHHHHTCHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC-CchHHHHHHH--HHHhcccHHHHHHHHHHHHhCC-
Confidence 6677777776654 33333334456678899999999988876 7899988776 3357788888888887887766
Q ss_pred ccchhHHHHH
Q 044786 318 QIQESLINDL 327 (340)
Q Consensus 318 ~~~~~t~~~l 327 (340)
.|....|..=
T Consensus 100 ~p~~q~Fa~g 109 (116)
T 2p58_C 100 DPRIQTFVNG 109 (116)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 4555555443
No 274
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=74.27 E-value=24 Score=27.18 Aligned_cols=88 Identities=10% Similarity=0.038 Sum_probs=40.9
Q ss_pred HHHHHcccChhHHHHHHHHHHHhhcCCccccc----hHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHH
Q 044786 84 IVGYVDVADYQECITLFAEMMKRKKGHMLLVF----PAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLI 159 (340)
Q Consensus 84 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 159 (340)
+..+....++++|.+++++....-.+. ++ ........++.-.....-.-+..+.+++.. .++.......+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~---~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v 98 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDL---SERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGT 98 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHT---C-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhC---cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHH
Confidence 445556666666666666655432111 11 111222223332333333333344444422 33444455556
Q ss_pred HHHHhhcCHHHHHHHHHH
Q 044786 160 NFYGKFRCLEDADFVFSQ 177 (340)
Q Consensus 160 ~~~~~~~~~~~a~~~~~~ 177 (340)
..+.+.|+-++|.++|=+
T Consensus 99 ~~L~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 99 ENMIKLGLPEQALDLFLQ 116 (235)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHCCChhHHHHHHHH
Confidence 666666777766666544
No 275
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=72.88 E-value=19 Score=25.48 Aligned_cols=23 Identities=17% Similarity=0.310 Sum_probs=13.7
Q ss_pred HHHHHHHHcccChhHHHHHHHHH
Q 044786 81 AVMIVGYVDVADYQECITLFAEM 103 (340)
Q Consensus 81 ~~li~~~~~~g~~~~a~~~~~~m 103 (340)
+.++.-|...|+.++|.+.++++
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHh
Confidence 44555566666666666666655
No 276
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=71.33 E-value=29 Score=25.86 Aligned_cols=55 Identities=13% Similarity=-0.005 Sum_probs=31.7
Q ss_pred ChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCC
Q 044786 92 DYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSR 150 (340)
Q Consensus 92 ~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 150 (340)
...++..+|..|...+.|. --+.-|......+...|++.+|.++|+.-.+.+-.|
T Consensus 94 ~~~~p~~if~~L~~~~IG~----~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 94 NFHESENTFKYMFNKGIGT----KLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp CHHHHHHHHHHHHHHTSST----TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccCCHHHHHHHHHHCCCcH----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3557777777777774433 344445555555555566666666655555555444
No 277
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=70.25 E-value=22 Score=28.01 Aligned_cols=54 Identities=6% Similarity=-0.015 Sum_probs=34.0
Q ss_pred hcccCCchhchHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhc
Q 044786 227 ACGGVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282 (340)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 282 (340)
...+.|+++++...+...++.. +-|...-..|++.+|-.|++++|.+-++....
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~--P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4456667666444444444432 34666666778888888888888777766654
No 278
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=69.87 E-value=46 Score=27.50 Aligned_cols=75 Identities=11% Similarity=0.043 Sum_probs=51.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhcCC--cHHHHHHHHHHHHHcC--chHHHHHHHHHHHHcCCccchhHHHHHHHH
Q 044786 256 VQCGLVDMYGKCRLLRDAERVFELIVDKK--NIASWNAMLVGYIRNG--LYVEATKFLYLMKASGIQIQESLINDLRIA 330 (340)
Q Consensus 256 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~g~~~~~~t~~~ll~a 330 (340)
..+.++.-|...++.++|.+.++++..+. ...+...+..++-+.+ ..+...+++..+...|+-+.......+.+.
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~v 297 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERI 297 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 45788999999999999999999997431 2334455555555433 345678888888888776555544444443
No 279
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=69.50 E-value=23 Score=27.90 Aligned_cols=53 Identities=15% Similarity=0.114 Sum_probs=24.1
Q ss_pred HcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHc
Q 044786 88 VDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKL 146 (340)
Q Consensus 88 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 146 (340)
.+.|+++++++....-++.. +-|...-..++..+|-.|+++.|.+-++...+.
T Consensus 8 l~~g~L~~al~~~~~~VR~~------P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKAS------PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTC------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHhC------CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 34445555544444444442 233334444444444455555555444444443
No 280
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=67.24 E-value=48 Score=26.71 Aligned_cols=70 Identities=6% Similarity=0.045 Sum_probs=43.6
Q ss_pred HHHHHHHHhccCchhHHHHHHHHHhhcccCCChhhHHHHHHhcccCCc-hhchHHHHHHHHHHhCCCccHHH
Q 044786 186 WTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDD-DGNCGRQMHANIVKIGLESDEYV 256 (340)
Q Consensus 186 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 256 (340)
.+.++.-|...|+.++|...++++......+ ......+..++-+.++ -.+....++..+.+.|+-+....
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~-e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~ 239 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQM 239 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHH-HHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchH-HHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 5678888889999999999999986322211 2344455555655432 23445666667666665554443
No 281
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=66.92 E-value=90 Score=29.75 Aligned_cols=53 Identities=8% Similarity=0.108 Sum_probs=28.5
Q ss_pred HHHHhcCChhHHHHHHhhcCcC--CcccH----HHHHHHHHcccChhHHHHHHHHHHHh
Q 044786 54 LMHVSCGQLDTARQLFDEMPLR--DFNSW----AVMIVGYVDVADYQECITLFAEMMKR 106 (340)
Q Consensus 54 ~~~~~~~~~~~a~~~~~~~~~~--~~~~~----~~li~~~~~~g~~~~a~~~~~~m~~~ 106 (340)
-+....|+.++++.+++..... +...| ..+.-+....|..+++..++......
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~ 440 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVE 440 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcC
Confidence 3456667777777777776642 11111 12223344555555666666665554
No 282
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=65.91 E-value=37 Score=25.01 Aligned_cols=172 Identities=10% Similarity=-0.015 Sum_probs=97.1
Q ss_pred CchhHHHHHHHHHHhhcCHHHHHHHHHHcccCChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCChhhHHHHHHhcc
Q 044786 150 RNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACG 229 (340)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~ 229 (340)
++..+-...+..+.+.+..+....+.+.+..++...-...+.++...+..+ +...+.++.. .++...-...+.++.
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~aL~ 106 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVALG 106 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 455555566666666666555555555566666666566666666666543 3344444433 355555556666666
Q ss_pred cCCchhchHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhcCCcHHHHHHHHHHHHHcCchHHHHHHH
Q 044786 230 GVDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFL 309 (340)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 309 (340)
..++. +....+...+ -.++..+-...+.++.+.++.+ +...+..+...++...-...+.++.+.+. .++...+
T Consensus 107 ~~~~~-~~~~~L~~~l----~d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L 179 (211)
T 3ltm_A 107 QIGDE-RAVEPLIKAL----KDEDWFVRIAAAFALGEIGDER-AVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAM 179 (211)
T ss_dssp HHCCG-GGHHHHHHHT----TCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHH
T ss_pred HhCcH-HHHHHHHHHH----hCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHH
Confidence 66654 3244444332 2456666666777777776654 34444444456676666677777777775 4556666
Q ss_pred HHHHHcCCccchhHHHHHHHHhhhcC
Q 044786 310 YLMKASGIQIQESLINDLRIACSSIS 335 (340)
Q Consensus 310 ~~m~~~g~~~~~~t~~~ll~a~~~~g 335 (340)
.++... ++...=...+.+..+.+
T Consensus 180 ~~~l~d---~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 180 EKLAET---GTGFARKVAVNYLETHK 202 (211)
T ss_dssp HHHHHH---CCHHHHHHHHHHHHC--
T ss_pred HHHHhC---CCHHHHHHHHHHHHhcC
Confidence 666543 34444455555554443
No 283
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=64.52 E-value=1e+02 Score=29.45 Aligned_cols=20 Identities=15% Similarity=0.297 Sum_probs=12.2
Q ss_pred HHHHcccChhHHHHHHHHHH
Q 044786 85 VGYVDVADYQECITLFAEMM 104 (340)
Q Consensus 85 ~~~~~~g~~~~a~~~~~~m~ 104 (340)
-+....|+.++++.+++...
T Consensus 382 LGlIh~g~~~~gl~~L~~yL 401 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYL 401 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTS
T ss_pred hhhhccCchHHHHHHHHHhc
Confidence 35556666666666666544
No 284
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=64.49 E-value=37 Score=25.47 Aligned_cols=57 Identities=12% Similarity=0.061 Sum_probs=35.6
Q ss_pred HHHHhhhccchhhHHHHHHHHHhhcCCCCCHHH--HHHHHHHHHhcCChhHHHHHHhhcC
Q 044786 16 LIKECTFQKDSAGAFELLNHIRKRVNIKPTLLF--LNRLLLMHVSCGQLDTARQLFDEMP 73 (340)
Q Consensus 16 li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~~~ 73 (340)
.+...++.|+.+.+..+++.+.+. |..++... -.+.+...+..|+.+-+..+++.-.
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 70 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQG-GRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGA 70 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc-CCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 455566778888888888877666 65443211 1133445566788877777766433
No 285
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=64.41 E-value=10 Score=23.27 Aligned_cols=57 Identities=14% Similarity=0.064 Sum_probs=30.6
Q ss_pred CCCCCCCcchhHHHHHHhhhcc-chhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC
Q 044786 3 NLCLPITTDMYTCLIKECTFQK-DSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQ 61 (340)
Q Consensus 3 ~~g~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~ 61 (340)
+.|+++++.- ..++..+...+ ..-.+.++++.+.+. +...+..|....+..+.+.|-
T Consensus 10 ~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~-~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 10 KAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDM-GEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHTS
T ss_pred HcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHh-CCCCCHhhHHHHHHHHHHCCC
Confidence 3455555444 34445554443 455666666666655 444555555555665555554
No 286
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=61.57 E-value=11 Score=26.13 Aligned_cols=56 Identities=13% Similarity=0.080 Sum_probs=25.0
Q ss_pred CCCCCCcchhHHHHHHhhhcc-chhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC
Q 044786 4 LCLPITTDMYTCLIKECTFQK-DSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQ 61 (340)
Q Consensus 4 ~g~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~ 61 (340)
.|+++++.-. .++..+...+ ..-.|.++++.+.+. +-..+..|.-.-+..+...|-
T Consensus 12 ~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 12 AGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEA-GEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp TTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHTS
T ss_pred CCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhh-CCCCCHHHHHHHHHHHHHCCc
Confidence 3444444332 2333333333 445555555555554 434444444444444444443
No 287
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=61.22 E-value=13 Score=26.07 Aligned_cols=57 Identities=9% Similarity=0.046 Sum_probs=28.4
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCcC----CcccHHHHHHHHHcccCh
Q 044786 35 HIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLR----DFNSWAVMIVGYVDVADY 93 (340)
Q Consensus 35 ~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~li~~~~~~g~~ 93 (340)
.+.+. |++++..=. .++..+...+..-.|.++++.+.+. +..|..--+..+...|-.
T Consensus 12 ~l~~~-g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 12 TLKET-GVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHT-TCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHc-CCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 34445 666554332 3444444555566677777666532 233333344455555543
No 288
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=60.23 E-value=41 Score=23.50 Aligned_cols=66 Identities=14% Similarity=-0.076 Sum_probs=37.8
Q ss_pred cchHHHHHHHHHHhhhcc---chhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHcc
Q 044786 114 VFPAWIIVCVLKACVCTM---NMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLK 179 (340)
Q Consensus 114 ~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 179 (340)
.|+..+-.....++.++. +..++..+++.+.+.+..-.....-.|.-++.+.|++++|.+..+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL 104 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 104 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 345544444444554443 456677777777765543333344455556667777777776666654
No 289
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=59.95 E-value=14 Score=25.82 Aligned_cols=57 Identities=14% Similarity=0.134 Sum_probs=29.4
Q ss_pred CCCCCCCcchhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCh
Q 044786 3 NLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQL 62 (340)
Q Consensus 3 ~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~ 62 (340)
++|+++++.- ..++..+...+ .-.|.++++.+.+. +-..+..|.-.-+..+...|-+
T Consensus 12 ~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~-~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 12 QRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKT-ASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp TTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTT-CTTCCHHHHHHHHHHHHHHTSE
T ss_pred HcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhh-CCCCCHhHHHHHHHHHHHCCcE
Confidence 4455555443 23334444444 55666666666655 4444555555555555555543
No 290
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=59.73 E-value=57 Score=25.06 Aligned_cols=241 Identities=10% Similarity=-0.023 Sum_probs=118.2
Q ss_pred HHHHHhhhccchhhHHHHHHHHHhhcCCCCCHH---HHHHHHHHHHhcCChhHHHHHHhhcCcC---CcccHHHHHHHHH
Q 044786 15 CLIKECTFQKDSAGAFELLNHIRKRVNIKPTLL---FLNRLLLMHVSCGQLDTARQLFDEMPLR---DFNSWAVMIVGYV 88 (340)
Q Consensus 15 ~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~ 88 (340)
..+...++.|+.+....+++ . |..++.. .-.+.+...++.|+.+-+..+++.-..+ +..-.+.+.. .+
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~----~-g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~-A~ 80 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLE----G-GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLL-AA 80 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHH----T-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHH-HH
T ss_pred hHHHHHHHcCCHHHHHHHHH----c-CCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHH-HH
Confidence 45666677888776665554 3 4333211 1123455667788888888777754332 2222333333 33
Q ss_pred cccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCchh------------HHH
Q 044786 89 DVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNIS------------LTG 156 (340)
Q Consensus 89 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------------~~~ 156 (340)
..|+.+ +++.+.+.+..+ -..+..-.+.+ ...+..|+.+ +.+.+.+.|..++.. .-.
T Consensus 81 ~~~~~~----~v~~Ll~~g~~~--~~~~~~g~t~L-~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~ 149 (285)
T 1wdy_A 81 IAGSVK----LLKLFLSKGADV--NECDFYGFTAF-MEAAVYGKVK----ALKFLYKRGANVNLRRKTKEDQERLRKGGA 149 (285)
T ss_dssp HHTCHH----HHHHHHHTTCCT--TCBCTTCCBHH-HHHHHTTCHH----HHHHHHHTTCCTTCCCCCCHHHHHTTCCCC
T ss_pred HcCCHH----HHHHHHHcCCCC--CccCcccCCHH-HHHHHhCCHH----HHHHHHHhCCCcccccccHHHHHhhccCCC
Confidence 455543 445555553222 12222222222 2334445544 455556666554422 012
Q ss_pred HHHHHHHhhcCHHHHHHHHHHcc----cCChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCChhh--HHHHHHhccc
Q 044786 157 SLINFYGKFRCLEDADFVFSQLK----RHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYT--FSSVLKACGG 230 (340)
Q Consensus 157 ~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t--~~~ll~~~~~ 230 (340)
+.+...+..|+.+-+..+++... ..+....+.+..+ +..++.....++++.+.+.|..++... -.+.+...+.
T Consensus 150 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a-~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~ 228 (285)
T 1wdy_A 150 TALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHA-LLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVE 228 (285)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHH-HHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHH
T ss_pred cHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHH-HHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHH
Confidence 34555667888888887777522 1122233333333 345666666777888888887665421 1122233333
Q ss_pred CCchhchHHHHHHHHHH-hCCCccHHH--HHHHHHHHhccCCHHHHHHHHH
Q 044786 231 VDDDGNCGRQMHANIVK-IGLESDEYV--QCGLVDMYGKCRLLRDAERVFE 278 (340)
Q Consensus 231 ~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~li~~~~~~~~~~~A~~~~~ 278 (340)
.|.. + +.+.+.+ .|..++... -.+-+...++.|+.+-+.-+++
T Consensus 229 ~~~~-~----~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~ 274 (285)
T 1wdy_A 229 KKHL-G----LVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCK 274 (285)
T ss_dssp TTCH-H----HHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred cCCH-H----HHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHH
Confidence 4443 2 3333444 555543221 1123334445566655554444
No 291
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=58.30 E-value=14 Score=26.04 Aligned_cols=58 Identities=16% Similarity=0.100 Sum_probs=31.4
Q ss_pred CCCCCCCcchhHHHHHHhhhcc-chhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCh
Q 044786 3 NLCLPITTDMYTCLIKECTFQK-DSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQL 62 (340)
Q Consensus 3 ~~g~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~ 62 (340)
+.|+++++.-. .++..+...+ ..-.|.++++.+.+. +-..+..|.-..+..+...|-+
T Consensus 10 ~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 10 DAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDL-GEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHTTSE
T ss_pred HcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHCCcE
Confidence 34555554442 3444444444 556666666666665 4445555555555666665544
No 292
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=54.95 E-value=21 Score=22.91 Aligned_cols=37 Identities=11% Similarity=-0.027 Sum_probs=27.1
Q ss_pred cCHHHHHHHHHHcccCChhhHHHHHHHHhccCchhHH
Q 044786 166 RCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQV 202 (340)
Q Consensus 166 ~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 202 (340)
...++|.++++.+..++...|..++.++...|+..-|
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 4577788888888888777888888888766665444
No 293
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=54.77 E-value=61 Score=24.20 Aligned_cols=20 Identities=5% Similarity=-0.155 Sum_probs=10.9
Q ss_pred HHHHHhccCCHHHHHHHHHH
Q 044786 260 LVDMYGKCRLLRDAERVFEL 279 (340)
Q Consensus 260 li~~~~~~~~~~~A~~~~~~ 279 (340)
.+...++.|+.+-+..+++.
T Consensus 153 ~L~~A~~~~~~~~v~~Ll~~ 172 (241)
T 1k1a_A 153 PLIHAVENNSLSMVQLLLQH 172 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHc
Confidence 33444556666666555554
No 294
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=54.30 E-value=18 Score=23.23 Aligned_cols=64 Identities=17% Similarity=0.158 Sum_probs=43.9
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCcCCcccHHHHHHHHHcccChhHHH
Q 044786 31 ELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECI 97 (340)
Q Consensus 31 ~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 97 (340)
.+++.+.+. |+- +..-...+-. .....+.+.|.++++.+..++...|..++.++...|...-|.
T Consensus 25 ~vld~L~~~-~vl-t~~~~e~I~~-~~~~t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 25 QLWDVLLSR-ELF-RPHMIEDIQR-AGSGSRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp TTHHHHHHT-TSS-CHHHHHHHHT-STTCCHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHc-CCC-CHHHHHHHHh-ccCCChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 466777776 543 3333332221 001257899999999999999999999999998777766553
No 295
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=54.07 E-value=60 Score=23.58 Aligned_cols=170 Identities=10% Similarity=-0.015 Sum_probs=87.3
Q ss_pred chhHHHHHHHHHHhhcCHHHHHHHHHHcccCChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCChhhHHHHHHhccc
Q 044786 151 NISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGG 230 (340)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 230 (340)
+..+-...+..+.+.+.-+....+.+.+..++...-...+.++...+..+ +...+.++.. .++...-...+.++..
T Consensus 27 ~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~ 102 (201)
T 3ltj_A 27 SYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVALGQ 102 (201)
T ss_dssp CHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 44444444555555555444444445555555555555555565555543 3333333333 2555555555666666
Q ss_pred CCchhchHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhcCCcHHHHHHHHHHHHHcCchHHHHHHHH
Q 044786 231 VDDDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLY 310 (340)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 310 (340)
.++. +....+...+ -.++..+-...+.++.+.++.+ +...+..+...++...-...+.++.+.|. .++...+.
T Consensus 103 ~~~~-~~~~~L~~~l----~d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~~~~~~L~ 175 (201)
T 3ltj_A 103 IGDE-RAVEPLIKAL----KDEDWFVRIAAAFALGEIGDER-AVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAME 175 (201)
T ss_dssp HCCG-GGHHHHHHHT----TCSSHHHHHHHHHHHHHHTCGG-GHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHH
T ss_pred hCcH-HHHHHHHHHH----cCCCHHHHHHHHHHHHHhCCHH-HHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHH
Confidence 5554 3233433332 1345555556666666666543 33344444445666666666777777765 34555555
Q ss_pred HHHHcCCccchhHHHHHHHHhhhc
Q 044786 311 LMKASGIQIQESLINDLRIACSSI 334 (340)
Q Consensus 311 ~m~~~g~~~~~~t~~~ll~a~~~~ 334 (340)
++... ++...-...+.+..+.
T Consensus 176 ~~l~d---~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 176 KLAET---GTGFARKVAVNYLETH 196 (201)
T ss_dssp HHHHH---CCHHHHHHHHHHHHHC
T ss_pred HHHhC---CCHHHHHHHHHHHHHH
Confidence 55543 3444444445554443
No 296
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=53.93 E-value=55 Score=23.11 Aligned_cols=51 Identities=6% Similarity=-0.015 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCC
Q 044786 96 CITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSR 150 (340)
Q Consensus 96 a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 150 (340)
+.++|..|...+.|. --+.-|......+...|++.+|.++|+.-.+.+-.|
T Consensus 84 p~~if~~L~~~~IG~----~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGT----LSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTT----TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcH----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 555555555553332 334444444455555555555555555555544444
No 297
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=52.69 E-value=26 Score=23.92 Aligned_cols=46 Identities=11% Similarity=-0.022 Sum_probs=34.0
Q ss_pred HHHHHHHHcCchHHHHHHHHHHHHcCCccchhHHHHHHHHhhhcCc
Q 044786 291 AMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSISA 336 (340)
Q Consensus 291 ~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~a~~~~g~ 336 (340)
.++..+...+..-.|.++++.+.+.+...+..|.-..|+.+...|-
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 3455555666677788888888888777788888888887777764
No 298
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=47.98 E-value=1.1e+02 Score=30.43 Aligned_cols=64 Identities=11% Similarity=0.162 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhhc--C-CcHHHHHHHHHHHHHcCchHHHHHHHHHHHHcCCccchhHHHHHHHHhhhcC
Q 044786 270 LRDAERVFELIVD--K-KNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335 (340)
Q Consensus 270 ~~~A~~~~~~~~~--~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~a~~~~g 335 (340)
.+.-.+.|.++.+ . .|.......+..-.+++++-.|++++.++.+.. |+...|..++..+..+|
T Consensus 1265 ~~~~~~~~~el~k~~d~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~k--~~~~~~~~~~~~~~~l~ 1331 (1354)
T 3lxu_X 1265 LAEINELYTEIIKFVDANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEEK--RTRDHFVELAAINGALG 1331 (1354)
T ss_dssp HHHHHHHHHHHTTSSCTTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHT--CCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhhcccCCceeehhHHHHHHHHHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHcC
Confidence 4455666666654 1 233333333334446788999999999988774 67788888877776665
No 299
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=47.29 E-value=45 Score=27.63 Aligned_cols=64 Identities=13% Similarity=0.078 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHcccCC----hhhHHHHHHHHhccCc-hhHHHHHHHHHhhcccCCC
Q 044786 154 LTGSLINFYGKFRCLEDADFVFSQLKRHN----TVVWTAKIVNNCREGH-FHQVFNDFKEMGRERIKKN 217 (340)
Q Consensus 154 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~p~ 217 (340)
....++.-|...|++++|.+.++++..|+ ...+..+..++-+... .+.+..++..+...|+-+.
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~ 82 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATS 82 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCH
Confidence 45788999999999999999999998774 2344444444444322 3455666777776655443
No 300
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=46.99 E-value=24 Score=24.46 Aligned_cols=44 Identities=7% Similarity=0.033 Sum_probs=25.9
Q ss_pred HHHHHHHcCchHHHHHHHHHHHHcCCccchhHHHHHHHHhhhcC
Q 044786 292 MLVGYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335 (340)
Q Consensus 292 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~a~~~~g 335 (340)
++..+...++.-.|.++++.+.+.+...+..|.-..|+.+...|
T Consensus 19 Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 19 VSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 33444444455556666666666666666666666666666555
No 301
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=45.67 E-value=16 Score=21.00 Aligned_cols=35 Identities=14% Similarity=0.207 Sum_probs=22.4
Q ss_pred hhHHHHHHHHHhhcccCCChhhHHHHHHhc-ccCCc
Q 044786 199 FHQVFNDFKEMGRERIKKNSYTFSSVLKAC-GGVDD 233 (340)
Q Consensus 199 ~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~-~~~~~ 233 (340)
.++|.+.|.+|.+..-.++..||...+..+ ++..+
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i~i~DPr 37 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISELGTRDPR 37 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCTH
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCCCc
Confidence 367778888876654445556777777776 44443
No 302
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=45.24 E-value=55 Score=20.59 Aligned_cols=61 Identities=11% Similarity=0.047 Sum_probs=38.6
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHcccCChhhHHHHHHHHhccCchh
Q 044786 136 GKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFH 200 (340)
Q Consensus 136 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 200 (340)
...+++.+.+.|+- +..-+..+.. .....++|..+++.+..++...|..++.++...+...
T Consensus 24 v~~lld~L~~~~vl-t~~~~e~I~~---~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~ 84 (94)
T 2p1h_A 24 TSYIMDHMISDGFL-TISEEEKVRN---EPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKD 84 (94)
T ss_dssp HHHHHHHHHHHTSS-CHHHHHHHHT---SSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHCCCC-CHHHHHHHHc---CCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHH
Confidence 44556666666644 2222222222 3466778888888888888888888888887766543
No 303
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=44.70 E-value=82 Score=22.40 Aligned_cols=71 Identities=10% Similarity=0.090 Sum_probs=42.2
Q ss_pred hhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHc--CCCCchhHHHHHHHHHHhhcCH
Q 044786 93 YQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKL--GSSRNISLTGSLINFYGKFRCL 168 (340)
Q Consensus 93 ~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~ 168 (340)
.+.+++-+.+..+.. |. +++.. -..++..+...+..-.|.++++.+.+. +...+..|..--++.+...|-+
T Consensus 13 ~~~~~~~~~~~L~~~-g~---r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 13 YDVLLERFKKILRQG-GL---KYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHH-TC---CCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHHc-CC---CCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 344555555544443 44 33322 234555556666777888888888877 6666666655566666666654
No 304
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=44.63 E-value=34 Score=23.04 Aligned_cols=54 Identities=19% Similarity=0.142 Sum_probs=45.6
Q ss_pred chhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 044786 11 DMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQL 68 (340)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~ 68 (340)
..|.-.|...+..++.+-|.++++..... | +...|.+++..|...=++|-++++
T Consensus 33 kLykDAietAa~S~d~elaEeLL~yFVe~-g---~kEcF~A~LytCYdLlrpDvVLEl 86 (125)
T 3qil_A 33 SLYKDAMQYASESKDTELAEELLQWFLQE-E---KRECFGACLFTCYDLLRPDVVLEL 86 (125)
T ss_dssp CCSSHHHHTTTSSCCSHHHHHHHHHHTTS-C---SHHHHHHHHHHHTTCSCTTHHHHT
T ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHc-C---chHHHHHHHHHHHhccChHHHHHH
Confidence 45677888888999999999999999887 5 678888889888888888888876
No 305
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=44.61 E-value=1.3e+02 Score=24.57 Aligned_cols=25 Identities=4% Similarity=0.040 Sum_probs=13.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHh
Q 044786 256 VQCGLVDMYGKCRLLRDAERVFELI 280 (340)
Q Consensus 256 ~~~~li~~~~~~~~~~~A~~~~~~~ 280 (340)
....++..+.+....+.+.++|...
T Consensus 143 fl~~vl~~l~~~~g~~~l~~~~~~s 167 (339)
T 1ug3_A 143 LLLEILGLLCKSMGPKKVGTLWREA 167 (339)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHc
Confidence 3344555555555566666666644
No 306
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=44.34 E-value=85 Score=22.49 Aligned_cols=54 Identities=7% Similarity=0.003 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCch
Q 044786 95 ECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNI 152 (340)
Q Consensus 95 ~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 152 (340)
....+|..|...+.|. --+..|......+...|++.+|.++|+.-++.+-.|..
T Consensus 78 ~p~~if~~L~~~~IG~----~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGV----SLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp CHHHHHHHHHHTTSST----TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CHHHHHHHHHHCCcch----hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 3556777777764333 44455566666666666777777776666666655543
No 307
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=43.73 E-value=74 Score=22.06 Aligned_cols=9 Identities=33% Similarity=0.545 Sum_probs=3.6
Q ss_pred HHHHHHHHc
Q 044786 170 DADFVFSQL 178 (340)
Q Consensus 170 ~a~~~~~~~ 178 (340)
.|.++++.+
T Consensus 39 sa~ei~~~l 47 (145)
T 2fe3_A 39 TADDIYKAL 47 (145)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 344444333
No 308
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=43.27 E-value=37 Score=23.85 Aligned_cols=41 Identities=7% Similarity=-0.012 Sum_probs=20.0
Q ss_pred HHHHcCchHHHHHHHHHHHHcCCccchhHHHHHHHHhhhcC
Q 044786 295 GYIRNGLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335 (340)
Q Consensus 295 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~a~~~~g 335 (340)
.+...+..-.|.++++.+.+.+...+..|.-..|+.+...|
T Consensus 35 ~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 35 VLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 33333444445555555555544445555555555544444
No 309
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=41.96 E-value=53 Score=22.63 Aligned_cols=48 Identities=10% Similarity=0.083 Sum_probs=32.8
Q ss_pred HHHHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCH
Q 044786 121 VCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168 (340)
Q Consensus 121 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 168 (340)
..++..+...+..-.|.++++.+.+.+...+..|..--++.+...|-+
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 345555666666777888888888777777776666666666666643
No 310
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=41.45 E-value=34 Score=23.49 Aligned_cols=36 Identities=19% Similarity=0.258 Sum_probs=15.4
Q ss_pred HHHhCCCccHHHHHHHHHHHhccC-CHHHHHHHHHHhh
Q 044786 245 IVKIGLESDEYVQCGLVDMYGKCR-LLRDAERVFELIV 281 (340)
Q Consensus 245 ~~~~~~~~~~~~~~~li~~~~~~~-~~~~A~~~~~~~~ 281 (340)
+.+.|+++++.-. .+++.+...+ ..-.|.++++.++
T Consensus 9 l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~ 45 (136)
T 1mzb_A 9 LRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALM 45 (136)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHH
T ss_pred HHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHH
Confidence 4445555544432 2333333333 3444555555554
No 311
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=41.14 E-value=62 Score=24.58 Aligned_cols=53 Identities=9% Similarity=-0.001 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCC
Q 044786 94 QECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSR 150 (340)
Q Consensus 94 ~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 150 (340)
+.+..+|..|...+.|. --+..|......+...|++.+|.++|+.-.+.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~----~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQ----ESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCST----TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcch----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
No 312
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=39.83 E-value=61 Score=21.96 Aligned_cols=46 Identities=7% Similarity=0.036 Sum_probs=30.1
Q ss_pred HHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCH
Q 044786 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168 (340)
Q Consensus 123 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 168 (340)
++..+...+..-.|.++++.+.+.+...+..|..-.++.+...|-+
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 4444445556677888888887777666666666666666666643
No 313
>1q2z_A ATP-dependent DNA helicase II, 80 kDa subunit; KU, DNA repair, protein structure, spectroscopy, DNA-PK, KU86, KU80, protein binding; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=39.71 E-value=63 Score=21.71 Aligned_cols=48 Identities=10% Similarity=0.153 Sum_probs=33.3
Q ss_pred CCHHHHHHHHHHhhcC----CcHHHHHHHHHHHH---HcCchHHHHHHHHHHHHcCCc
Q 044786 268 RLLRDAERVFELIVDK----KNIASWNAMLVGYI---RNGLYVEATKFLYLMKASGIQ 318 (340)
Q Consensus 268 ~~~~~A~~~~~~~~~~----~~~~~~~~li~~~~---~~~~~~~a~~~~~~m~~~g~~ 318 (340)
.++++|.+.+..|+.. ..+..||.++..+- ..++. ...|+.+...++.
T Consensus 41 ~~y~ka~ecl~~~R~~~i~~~ep~~yN~Fl~~Lk~~~~~~~l---~~FW~~iv~~~lg 95 (120)
T 1q2z_A 41 PYFMKSIDCIRAFREEAIKFSEEQRFNNFLKALQEKVEIKQL---NHFWEIVVQDGIT 95 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTST---THHHHHHHHTTCC
T ss_pred chHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhhH---HHHHHHHHHCCcC
Confidence 3678888888888762 47888999988775 33333 4566677776654
No 314
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=39.20 E-value=1.2e+02 Score=22.65 Aligned_cols=62 Identities=8% Similarity=0.087 Sum_probs=43.7
Q ss_pred chhhHHHHHHHHHHcCCCC-chhHHHHHHHHHHhhcCHHHHHHHHHHcccCChhhHHHHHHHH
Q 044786 132 NMELGKQVHGLLFKLGSSR-NISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNN 193 (340)
Q Consensus 132 ~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~ 193 (340)
.......+|..|...|+-. -...|......+...|++.+|.++|+.-.+..+.....|...+
T Consensus 94 ~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~rL~~~~ 156 (202)
T 3esl_A 94 NFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYNRLLRSL 156 (202)
T ss_dssp CHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHH
T ss_pred ccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHH
Confidence 3557888888888877654 3446677777778888888888888877766666655555443
No 315
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=39.07 E-value=1.2e+02 Score=22.57 Aligned_cols=63 Identities=8% Similarity=-0.077 Sum_probs=41.2
Q ss_pred HHHHHh---ccCchhHHHHHHHHHhhcccCCChhhHHHHHHhcccCCchhch----HHHHHHHHHHhCCC
Q 044786 189 KIVNNC---REGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC----GRQMHANIVKIGLE 251 (340)
Q Consensus 189 li~~~~---~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~----~~~~~~~~~~~~~~ 251 (340)
+|+++. +..+++.|+-.+-+|.+.|..|....-..++.+....|.-+.. +...++.....|++
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 79 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGAY 79 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHCCc
Confidence 455554 4678999999999999998888776666777776665554332 33334444555543
No 316
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=38.31 E-value=38 Score=19.38 Aligned_cols=48 Identities=10% Similarity=0.029 Sum_probs=25.1
Q ss_pred HHHHHHHHHhhcCCcHHHHHHHHHHHHHcCchHHHHHHHHHHHHcCCccc
Q 044786 271 RDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQ 320 (340)
Q Consensus 271 ~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~ 320 (340)
++..+.+.+|-..-+..+-...+. ...|+.+.|+..+-+|...+..|+
T Consensus 10 ee~l~~L~emFP~ld~~~I~~vL~--a~~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 10 EEDLKAIQDMFPNMDQEVIRSVLE--AQRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHT--TTTTCHHHHHHHHHHSSCCCCSCC
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHH--HcCCCHHHHHHHHHcCcCCCCCCC
Confidence 444555555532223333322222 235677777777777766666665
No 317
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=38.24 E-value=39 Score=23.53 Aligned_cols=38 Identities=5% Similarity=0.082 Sum_probs=16.8
Q ss_pred HHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhc
Q 044786 243 ANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282 (340)
Q Consensus 243 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 282 (340)
+.+.+.|++++..-. .+++.+...+ .-.|.++++.++.
T Consensus 8 ~~L~~~g~r~T~qR~-~Il~~l~~~~-h~ta~ei~~~l~~ 45 (145)
T 3eyy_A 8 SDLRQRGYRLTPQRQ-LVLEAVDTLE-HATPDDILGEVRK 45 (145)
T ss_dssp HHHHTTTCCCCHHHH-HHHHHHHHHS-SBCHHHHHHHHHT
T ss_pred HHHHHcCCCcCHHHH-HHHHHHHhcC-CCCHHHHHHHHHh
Confidence 344455555554432 2233333333 3445555555543
No 318
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=37.95 E-value=51 Score=18.05 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=18.1
Q ss_pred ccchhhHHHHHHHHHhhcCCCCCH
Q 044786 23 QKDSAGAFELLNHIRKRVNIKPTL 46 (340)
Q Consensus 23 ~~~~~~a~~~~~~m~~~~g~~~~~ 46 (340)
.+|..+|.++++.+.+. |--|+.
T Consensus 6 ~RDv~RaiELle~lq~s-gevp~~ 28 (53)
T 1zl8_A 6 ERDVQRILELMEHVQKT-GEVNNA 28 (53)
T ss_dssp HHHHHHHHHHHHHHGGG-SSSTHH
T ss_pred HHHHHHHHHHHHHHHHc-CCCCcH
Confidence 45888999999999988 765554
No 319
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=37.80 E-value=1.2e+02 Score=22.50 Aligned_cols=66 Identities=9% Similarity=0.014 Sum_probs=43.7
Q ss_pred HHHHHHh---ccCchhHHHHHHHHHhhcccCCChhhHHHHHHhcccCCchhch----HHHHHHHHHHhCCCccH
Q 044786 188 AKIVNNC---REGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC----GRQMHANIVKIGLESDE 254 (340)
Q Consensus 188 ~li~~~~---~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 254 (340)
.+|+++. +..+++.|+-.+-+|.+.| .|....-..++.+....|.-+.. +...++.....|++--.
T Consensus 16 d~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~ 88 (204)
T 2r9g_A 16 DVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPEAR 88 (204)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTTTH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHH
Confidence 3455555 4678999999999999999 77666666777777666654332 33344555666665433
No 320
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=37.77 E-value=56 Score=18.48 Aligned_cols=37 Identities=14% Similarity=0.300 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhhcCCcHHHHHHHH--HHHHHcCchHHHH
Q 044786 270 LRDAERVFELIVDKKNIASWNAML--VGYIRNGLYVEAT 306 (340)
Q Consensus 270 ~~~A~~~~~~~~~~~~~~~~~~li--~~~~~~~~~~~a~ 306 (340)
-++|..+-+-+...++..---.|| .++..+|++++|+
T Consensus 22 H~EA~tIA~~L~~~~~~eE~v~mIr~~SLmNrG~Yq~Al 60 (61)
T 3ph0_C 22 HQEAASIADWLAQEECMAECVTLIRLSSLMNQGDYQRAL 60 (61)
T ss_dssp HHHHHHHHHHHHTSSTTHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHccchHhHhh
Confidence 455555555554444332222333 3566778777765
No 321
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=37.43 E-value=99 Score=21.26 Aligned_cols=24 Identities=17% Similarity=-0.036 Sum_probs=11.9
Q ss_pred HHHHHHhccCCHHHHHHHHHHhhc
Q 044786 259 GLVDMYGKCRLLRDAERVFELIVD 282 (340)
Q Consensus 259 ~li~~~~~~~~~~~A~~~~~~~~~ 282 (340)
-|.-++.+.|++++|.+..+.+..
T Consensus 83 yLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 83 YLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHh
Confidence 344445555555555555555443
No 322
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=36.49 E-value=1.1e+02 Score=21.77 Aligned_cols=10 Identities=10% Similarity=0.122 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 044786 238 GRQMHANIVK 247 (340)
Q Consensus 238 ~~~~~~~~~~ 247 (340)
+..+++.+.+
T Consensus 51 A~eI~~~l~~ 60 (162)
T 4ets_A 51 PESLYMEIKQ 60 (162)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 3334433333
No 323
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=35.79 E-value=1.2e+02 Score=21.67 Aligned_cols=47 Identities=15% Similarity=0.202 Sum_probs=28.3
Q ss_pred CChhHHHHHHhhcCcC--C----cccHHHHHH-H-----HHcccChhHHHHHHHHHHHh
Q 044786 60 GQLDTARQLFDEMPLR--D----FNSWAVMIV-G-----YVDVADYQECITLFAEMMKR 106 (340)
Q Consensus 60 ~~~~~a~~~~~~~~~~--~----~~~~~~li~-~-----~~~~g~~~~a~~~~~~m~~~ 106 (340)
|++-+|.++|+..=.. + ...|..||. . ..+.|+...|..++.+....
T Consensus 46 g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 46 GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 7777777777765422 1 123555555 1 23467778888887777654
No 324
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=35.38 E-value=83 Score=19.74 Aligned_cols=63 Identities=11% Similarity=0.058 Sum_probs=44.9
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcCcCCcccHHHHHHHHHcccChhHH
Q 044786 29 AFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQEC 96 (340)
Q Consensus 29 a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 96 (340)
...+++.+.+. |+- +..-+..+-. .....+.|.++++.+..++...|..++.++...+...-|
T Consensus 24 v~~lld~L~~~-~vl-t~~~~e~I~~---~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 24 TSYIMDHMISD-GFL-TISEEEKVRN---EPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp HHHHHHHHHHH-TSS-CHHHHHHHHT---SSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHC-CCC-CHHHHHHHHc---CCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHH
Confidence 55677777777 654 4444433332 367888999999999988888999999988877754433
No 325
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=34.19 E-value=41 Score=23.61 Aligned_cols=38 Identities=13% Similarity=0.221 Sum_probs=18.2
Q ss_pred HHHHhCCCccHHHHHHHHHHHhccC-CHHHHHHHHHHhhc
Q 044786 244 NIVKIGLESDEYVQCGLVDMYGKCR-LLRDAERVFELIVD 282 (340)
Q Consensus 244 ~~~~~~~~~~~~~~~~li~~~~~~~-~~~~A~~~~~~~~~ 282 (340)
.+.+.|++++..-. .++..+...+ ..-.|.++++.++.
T Consensus 7 ~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~ 45 (150)
T 2w57_A 7 ALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLID 45 (150)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHH
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 34555666555443 2333444333 44455555555543
No 326
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=33.83 E-value=1.9e+02 Score=23.37 Aligned_cols=86 Identities=16% Similarity=0.108 Sum_probs=44.8
Q ss_pred HHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHH--HHHHHHHHHhcCChhHHHHHHhhcCcCCc-ccHHHHHHHHHccc
Q 044786 15 CLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLF--LNRLLLMHVSCGQLDTARQLFDEMPLRDF-NSWAVMIVGYVDVA 91 (340)
Q Consensus 15 ~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~li~~~~~~g 91 (340)
+.+...+..|+.+.+..+++ . |..++... -.+.+...+..|+.+-+..+++.-...+. .-++. +...+..|
T Consensus 22 t~L~~Aa~~g~~~~v~~Ll~----~-g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~-L~~A~~~g 95 (364)
T 3ljn_A 22 EKIHVAARKGQTDEVRRLIE----T-GVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKP-IHLAVMAN 95 (364)
T ss_dssp HHHHHHHHHTCHHHHHHHHH----T-TCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCH-HHHHHHTT
T ss_pred CHHHHHHHcCCHHHHHHHHH----c-CCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCH-HHHHHHcC
Confidence 44555556777766655553 3 44333211 11234455667888777777766553333 22233 33344566
Q ss_pred ChhHHHHHHHHHHHh
Q 044786 92 DYQECITLFAEMMKR 106 (340)
Q Consensus 92 ~~~~a~~~~~~m~~~ 106 (340)
+.+-+..+++.-...
T Consensus 96 ~~~~v~~Ll~~~~~~ 110 (364)
T 3ljn_A 96 KTDLVVALVEGAKER 110 (364)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcccc
Confidence 766666665554443
No 327
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=32.81 E-value=1.7e+02 Score=22.54 Aligned_cols=235 Identities=8% Similarity=-0.161 Sum_probs=113.9
Q ss_pred hcCcCCcccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHhhhccchh----hHHHHHHHHHHc
Q 044786 71 EMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNME----LGKQVHGLLFKL 146 (340)
Q Consensus 71 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~----~a~~~~~~~~~~ 146 (340)
.+..+|...-...+.++.+.|. ..+...+..+... ++..+-...+.++.+.+... ....++......
T Consensus 31 ~L~~~~~~vr~~A~~~L~~~~~-~~~~~~L~~~l~d--------~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~ 101 (280)
T 1oyz_A 31 LLDDHNSLKRISSARVLQLRGG-QDAVRLAIEFCSD--------KNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALN 101 (280)
T ss_dssp HTTCSSHHHHHHHHHHHHHHCC-HHHHHHHHHHHTC--------SSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHccCC-chHHHHHHHHHcC--------CCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhc
Confidence 3344454444445555555554 3344444444432 34444445555666555322 222233221112
Q ss_pred CCCCchhHHHHHHHHHHhhcC-----HHHHHHHH-HHcccCChhhHHHHHHHHhccCchhHHHHHHHHHhhcccCCChhh
Q 044786 147 GSSRNISLTGSLINFYGKFRC-----LEDADFVF-SQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGRERIKKNSYT 220 (340)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~-~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t 220 (340)
.++..+-...+.++...+. ...+...+ ..+..++..+-...+.++...|..+ +...+.++.. .++...
T Consensus 102 --d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~v 175 (280)
T 1oyz_A 102 --DKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKA-TIPLLINLLK---DPNGDV 175 (280)
T ss_dssp --CSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---C-CHHHHHHHHT---CSSHHH
T ss_pred --CCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHc---CCCHHH
Confidence 2455555566666666552 23343333 3345666666666677777777643 4444444443 245444
Q ss_pred HHHHHHhcccCCch-hchHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhcCCcHHHHHHHHHHHHHc
Q 044786 221 FSSVLKACGGVDDD-GNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRN 299 (340)
Q Consensus 221 ~~~ll~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~ 299 (340)
-...+.++...+.. ..+...+...+ -.++..+-...+.++.+.|+......+...+. .++ .-...+.++.+.
T Consensus 176 r~~a~~aL~~~~~~~~~~~~~L~~~l----~d~~~~vR~~A~~aL~~~~~~~~~~~L~~~l~-d~~--vr~~a~~aL~~i 248 (280)
T 1oyz_A 176 RNWAAFAININKYDNSDIRDCFVEML----QDKNEEVRIEAIIGLSYRKDKRVLSVLCDELK-KNT--VYDDIIEAAGEL 248 (280)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHT----TCSCHHHHHHHHHHHHHTTCGGGHHHHHHHHT-SSS--CCHHHHHHHHHH
T ss_pred HHHHHHHHHhhccCcHHHHHHHHHHh----cCCCHHHHHHHHHHHHHhCCHhhHHHHHHHhc-Ccc--HHHHHHHHHHhc
Confidence 44455555444421 12122222222 23566666667777777776554445555543 344 233456677777
Q ss_pred CchHHHHHHHHHHHHcCCccchhHHHHHHHH
Q 044786 300 GLYVEATKFLYLMKASGIQIQESLINDLRIA 330 (340)
Q Consensus 300 ~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~a 330 (340)
|.. +++..+.++.... ++.......+.+
T Consensus 249 ~~~-~~~~~L~~~l~~~--~~~~~~~~~~~~ 276 (280)
T 1oyz_A 249 GDK-TLLPVLDTMLYKF--DDNEIITSAIDK 276 (280)
T ss_dssp CCG-GGHHHHHHHHTTS--SCCHHHHHHHHH
T ss_pred Cch-hhhHHHHHHHhcC--CCcHHHHHHHHH
Confidence 764 5666666665442 344444444443
No 328
>1rw2_A ATP-dependent DNA helicase II, 80 kDa subunit; KU80, NHEJ, structure, DNA-PK, DNA binding protein; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=31.94 E-value=1.1e+02 Score=21.67 Aligned_cols=48 Identities=10% Similarity=0.153 Sum_probs=31.8
Q ss_pred CCHHHHHHHHHHhhcC----CcHHHHHHHHHHHH---HcCchHHHHHHHHHHHHcCCc
Q 044786 268 RLLRDAERVFELIVDK----KNIASWNAMLVGYI---RNGLYVEATKFLYLMKASGIQ 318 (340)
Q Consensus 268 ~~~~~A~~~~~~~~~~----~~~~~~~~li~~~~---~~~~~~~a~~~~~~m~~~g~~ 318 (340)
.++++|.+.+..|+.. ..+..||.+|..+- ..++. ..+|+.+...++.
T Consensus 72 ~~y~KA~ecL~~lR~~~i~~~ep~~yN~Fl~~LK~~l~~~~l---~~FW~~Iv~~~lg 126 (152)
T 1rw2_A 72 PYFMKSIDCIRAFREEAIKFSEEQRFNNFLKALQEKVEIKQL---NHFWEIVVQDGIT 126 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHSCC---HHHHHHHHHHTCS
T ss_pred chHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhhH---HHHHHHHHHCCcc
Confidence 3577888888888762 46778888887764 23333 4556667666654
No 329
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=31.82 E-value=2.6e+02 Score=24.47 Aligned_cols=61 Identities=13% Similarity=0.217 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHhhcCcCCc-cc------HH-HHHHHHHcccChhHHHHHHHHHHHh
Q 044786 46 LLFLNRLLLMHVSCGQLDTARQLFDEMPLRDF-NS------WA-VMIVGYVDVADYQECITLFAEMMKR 106 (340)
Q Consensus 46 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~------~~-~li~~~~~~g~~~~a~~~~~~m~~~ 106 (340)
...+|.++..|...+.++.|..+..+..-|.. .+ |. .+.+.+.-.+++.+|.+.+......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 45678888888888888888888888765422 22 11 2345556678888888888877654
No 330
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=31.70 E-value=79 Score=23.44 Aligned_cols=12 Identities=8% Similarity=0.160 Sum_probs=4.5
Q ss_pred HhcCChhHHHHH
Q 044786 57 VSCGQLDTARQL 68 (340)
Q Consensus 57 ~~~~~~~~a~~~ 68 (340)
++.|+++-+..+
T Consensus 50 ~~~~~~~~v~~L 61 (240)
T 3eu9_A 50 AINNRIDLVKYY 61 (240)
T ss_dssp HHTTCHHHHHHH
T ss_pred HHhCCHHHHHHH
Confidence 333443333333
No 331
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=31.40 E-value=1.3e+02 Score=20.90 Aligned_cols=46 Identities=13% Similarity=0.085 Sum_probs=29.4
Q ss_pred HHHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCH
Q 044786 123 VLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCL 168 (340)
Q Consensus 123 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 168 (340)
++..+...+..-.|.++++.+.+.+...+..|..-.++.+...|-+
T Consensus 32 IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 32 VVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 4444445556777888888887776666666655556666666543
No 332
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=31.30 E-value=1.1e+02 Score=22.60 Aligned_cols=48 Identities=13% Similarity=-0.090 Sum_probs=27.3
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhhcCCcHHHHHHHHHHHHHcCchHHHHHHHHH
Q 044786 258 CGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKFLYL 311 (340)
Q Consensus 258 ~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 311 (340)
-.+|.++.+.|++++|.++..++...- ..... ..+.+++.-|.-++..
T Consensus 36 LqvI~GLlql~~ydea~~yI~~~~~~~-----q~~~~-~~~i~~P~la~lLl~K 83 (192)
T 1ixm_A 36 LQLIKGNLSLQKYDRVFEMIEEMVIDA-----KHESK-LSNLKTPHLAFDFLTF 83 (192)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH-----HHHHH-HHTTTCHHHHHHHHHG
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHH-----HHHHH-HHhCCCHHHHHHHHHH
Confidence 356777777788888887777775321 11121 4445555555444444
No 333
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=31.27 E-value=1.2e+02 Score=21.76 Aligned_cols=28 Identities=11% Similarity=0.070 Sum_probs=19.3
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHcccCC
Q 044786 155 TGSLINFYGKFRCLEDADFVFSQLKRHN 182 (340)
Q Consensus 155 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 182 (340)
...+++-|...++.++|...++++..|+
T Consensus 13 ~~~ii~EYf~~~D~~Ea~~~l~eL~~p~ 40 (165)
T 2rg8_A 13 LTPIIQEYFEHGDTNEVAEMLRDLNLGE 40 (165)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCSG
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcc
Confidence 3456777777777777777777776553
No 334
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=30.45 E-value=2.3e+02 Score=23.39 Aligned_cols=24 Identities=13% Similarity=0.184 Sum_probs=15.7
Q ss_pred HHHHHHhhhccchhhHHHHHHHHH
Q 044786 14 TCLIKECTFQKDSAGAFELLNHIR 37 (340)
Q Consensus 14 ~~li~~~~~~~~~~~a~~~~~~m~ 37 (340)
..+|.-|...|+.++|.+.++.+.
T Consensus 16 ~~ii~EY~~~~D~~Ea~~~l~eL~ 39 (364)
T 3l6a_A 16 ETVVTEYLNSGNANEAVNGVREMR 39 (364)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhC
Confidence 456666666677777766666654
No 335
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=30.14 E-value=1.5e+02 Score=21.15 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=11.4
Q ss_pred HHHHHhhhccchhhHHHHHHHHH
Q 044786 15 CLIKECTFQKDSAGAFELLNHIR 37 (340)
Q Consensus 15 ~li~~~~~~~~~~~a~~~~~~m~ 37 (340)
.+|+-|...++.++|.+.++.+.
T Consensus 15 ~ii~EYf~~~D~~Ea~~~l~eL~ 37 (165)
T 2rg8_A 15 PIIQEYFEHGDTNEVAEMLRDLN 37 (165)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHHHhC
Confidence 34444445555555555555443
No 336
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=29.65 E-value=1.8e+02 Score=21.85 Aligned_cols=67 Identities=9% Similarity=0.020 Sum_probs=45.1
Q ss_pred HHHHHHHhc---cCchhHHHHHHHHHhhcccCCChhhHHHHHHhcccCCchhch----HHHHHHHHHHhCCCcc
Q 044786 187 TAKIVNNCR---EGHFHQVFNDFKEMGRERIKKNSYTFSSVLKACGGVDDDGNC----GRQMHANIVKIGLESD 253 (340)
Q Consensus 187 ~~li~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 253 (340)
-.+|+++.+ ..+++.|+-.+-+|.+.|..|....-..++.+....|.-+.. +...++.....|++--
T Consensus 36 Yd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~ 109 (213)
T 3ctd_A 36 FDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFPEG 109 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTTTT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHH
Confidence 334555554 678999999999999999888777667777777666554332 3344555566666543
No 337
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=29.65 E-value=1.9e+02 Score=22.12 Aligned_cols=24 Identities=21% Similarity=0.021 Sum_probs=15.3
Q ss_pred HHHHhhhccchhhHHHHHHHHHhh
Q 044786 16 LIKECTFQKDSAGAFELLNHIRKR 39 (340)
Q Consensus 16 li~~~~~~~~~~~a~~~~~~m~~~ 39 (340)
-++.+...+++++|.++++...+.
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~ 47 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQ 47 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHH
Confidence 355566667777777777666543
No 338
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=29.02 E-value=1.5e+02 Score=20.86 Aligned_cols=60 Identities=12% Similarity=-0.020 Sum_probs=38.2
Q ss_pred hhHHHHHHHHHHcCCCC-chhHHHHHHHHHHhhcCHHHHHHHHHHcccCChhhHHHHHHHH
Q 044786 134 ELGKQVHGLLFKLGSSR-NISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVNN 193 (340)
Q Consensus 134 ~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~ 193 (340)
++...+|..|...|+-. -...|......+...|++.+|.++|+.-.+.+......|...+
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~~~ 142 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREFLQQQY 142 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHH
Confidence 34677777777776643 3345666666777777777777777776665555555554433
No 339
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=28.72 E-value=2.3e+02 Score=24.11 Aligned_cols=99 Identities=9% Similarity=-0.002 Sum_probs=0.0
Q ss_pred hchHHHHHHHHHH-------hCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhcCCc-------HHHHHHHHHHHHHc-
Q 044786 235 GNCGRQMHANIVK-------IGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKN-------IASWNAMLVGYIRN- 299 (340)
Q Consensus 235 ~~~~~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~~li~~~~~~- 299 (340)
++....+...+.. .++..+......++.. ..|+...+..+++.+..... ..+-..+-.+..+.
T Consensus 168 edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~~~ 245 (447)
T 3pvs_A 168 EDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL--VNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGERS 245 (447)
T ss_dssp HHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH--HCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHhhhh
Q ss_pred -----------------------CchHHHHHHHHHHHHcCCccchhHHHHHHHHhhhcC
Q 044786 300 -----------------------GLYVEATKFLYLMKASGIQIQESLINDLRIACSSIS 335 (340)
Q Consensus 300 -----------------------~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~a~~~~g 335 (340)
++.+.|+.++.+|.+.|..|....=..+..|.-..|
T Consensus 246 ~~~dk~gd~~yd~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig 304 (447)
T 3pvs_A 246 ARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVG 304 (447)
T ss_dssp CC---CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred hccCCccchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccc
No 340
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=28.29 E-value=61 Score=21.84 Aligned_cols=51 Identities=8% Similarity=-0.004 Sum_probs=30.2
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhhcCCcHHHHHHHHHHHHHcCchHHHHHH
Q 044786 258 CGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVGYIRNGLYVEATKF 308 (340)
Q Consensus 258 ~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 308 (340)
--.|+..+..++.+-|+++++-..+..+...|.+++-.|...=+++-++++
T Consensus 36 kDAietAa~S~d~elaEeLL~yFVe~g~kEcF~A~LytCYdLlrpDvVLEl 86 (125)
T 3qil_A 36 KDAMQYASESKDTELAEELLQWFLQEEKRECFGACLFTCYDLLRPDVVLEL 86 (125)
T ss_dssp SHHHHTTTSSCCSHHHHHHHHHHTTSCSHHHHHHHHHHHTTCSCTTHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHHHhccChHHHHHH
Confidence 334555555666666666666666556666666666666655555555443
No 341
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=28.08 E-value=3.1e+02 Score=24.06 Aligned_cols=61 Identities=13% Similarity=0.016 Sum_probs=44.8
Q ss_pred hhHHHHHHHHHHhhcCHHHHHHHHHHcccCCh-hh------HH-HHHHHHhccCchhHHHHHHHHHhhc
Q 044786 152 ISLTGSLINFYGKFRCLEDADFVFSQLKRHNT-VV------WT-AKIVNNCREGHFHQVFNDFKEMGRE 212 (340)
Q Consensus 152 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~------~~-~li~~~~~~~~~~~a~~~~~~m~~~ 212 (340)
...+|.++..|...+.++.|..+..+..-|.. .+ |. -+...+.-.+++.+|.+.+.....+
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 35678888999999999999999999875522 12 21 2345566688999999888887654
No 342
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=27.16 E-value=2e+02 Score=22.27 Aligned_cols=181 Identities=10% Similarity=0.022 Sum_probs=85.0
Q ss_pred HHHhhhccchhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhhcCHHHHHHHHHHcccC---ChhhHHHHHHHHhccCchh
Q 044786 124 LKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGKFRCLEDADFVFSQLKRH---NTVVWTAKIVNNCREGHFH 200 (340)
Q Consensus 124 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~ 200 (340)
+...+..|+.+-+. .+.+.|..++...-.+.+...+..|+.+-+..+++.-... +..-++.+.. .+..|+.+
T Consensus 35 L~~A~~~g~~~~v~----~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~-A~~~g~~~ 109 (285)
T 3kea_A 35 SYYAIADNNVRLVC----TLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYY-AVDSGNMQ 109 (285)
T ss_dssp HHHHHHTTCHHHHH----HHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHH-HHHTTCHH
T ss_pred HHHHHHcCCHHHHH----HHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHH-HHHcCCHH
Confidence 33444456665444 3444554443332234555666778877777776643222 2222333333 34456554
Q ss_pred HHHHHHHHHhhcccCCChhh---HHHHHHhcccCCchhchHHHHHHHHHHhCCCccHH-HHHHHHHHHhccCCHHHHHHH
Q 044786 201 QVFNDFKEMGRERIKKNSYT---FSSVLKACGGVDDDGNCGRQMHANIVKIGLESDEY-VQCGLVDMYGKCRLLRDAERV 276 (340)
Q Consensus 201 ~a~~~~~~m~~~~~~p~~~t---~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~A~~~ 276 (340)
-+ +.+.+.|..++... +.+.+...+..|.. .+.+.+.+.|..+... .-.+.+...+..|+.+-+..+
T Consensus 110 ~v----~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~-----~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~L 180 (285)
T 3kea_A 110 TV----KLFVKKNWRLMFYGKTGWKTSFYHAVMLNDV-----SIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILL 180 (285)
T ss_dssp HH----HHHHHHCGGGGGCSSSGGGSHHHHHHHTTCH-----HHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHH
T ss_pred HH----HHHHhcCCCCCccCCCCCCCHHHHHHHcCCH-----HHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHH
Confidence 33 33444455444321 12333333344443 2344445555444211 223445555677888777777
Q ss_pred HHHhhc--CCcHHHHHHHHHHHHHcCchHHHHHHHHHHHHcCCccchh
Q 044786 277 FELIVD--KKNIASWNAMLVGYIRNGLYVEATKFLYLMKASGIQIQES 322 (340)
Q Consensus 277 ~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~ 322 (340)
++.-.. ..+..-++..+..-+..|+. ++.+-+.+.|..|+..
T Consensus 181 l~~gad~n~~~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~~ 224 (285)
T 3kea_A 181 LDYMTSTNTNNSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYSA 224 (285)
T ss_dssp HHHHHHTCTTCCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTTT
T ss_pred HHcCCCCCcccCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCC
Confidence 665332 11211222222223344543 4555666677776654
No 343
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=27.06 E-value=1.6e+02 Score=20.51 Aligned_cols=24 Identities=17% Similarity=0.357 Sum_probs=12.6
Q ss_pred HHHHHHHcCchHHHHHHHHHHHHc
Q 044786 292 MLVGYIRNGLYVEATKFLYLMKAS 315 (340)
Q Consensus 292 li~~~~~~~~~~~a~~~~~~m~~~ 315 (340)
|..++.+.|++++|.+..+.+.+.
T Consensus 83 LAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 83 LTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhc
Confidence 344555555555555555555433
No 344
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=26.64 E-value=1.1e+02 Score=18.39 Aligned_cols=59 Identities=8% Similarity=0.150 Sum_probs=30.4
Q ss_pred HHhhcccCCChhhHHHHHHhcccCC-chhchHHHHHHHHHHhCCCccHHHHHHHHHHHhccC
Q 044786 208 EMGRERIKKNSYTFSSVLKACGGVD-DDGNCGRQMHANIVKIGLESDEYVQCGLVDMYGKCR 268 (340)
Q Consensus 208 ~m~~~~~~p~~~t~~~ll~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 268 (340)
.|.+.|++++..- ..++..+...+ ..-. +..+.+.+.+.+...+..|..-.+..+.+.|
T Consensus 7 ~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s-~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVS-AEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSBC-HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhCCCCCCC-HHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3455566655433 23444444432 2223 6666666666555555555555555555544
No 345
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=26.16 E-value=69 Score=18.29 Aligned_cols=21 Identities=24% Similarity=0.176 Sum_probs=14.4
Q ss_pred cCchHHHHHHHHHHHHcCCcc
Q 044786 299 NGLYVEATKFLYLMKASGIQI 319 (340)
Q Consensus 299 ~~~~~~a~~~~~~m~~~g~~~ 319 (340)
.-+++.|+..|.++...|--|
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP 53 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIP 53 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSC
T ss_pred CCCHHHHHHHHHHHHHcCCCC
Confidence 346778888888887665333
No 346
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=26.12 E-value=1.8e+02 Score=20.71 Aligned_cols=16 Identities=0% Similarity=0.212 Sum_probs=9.1
Q ss_pred HhcCChhHHHHHHhhc
Q 044786 57 VSCGQLDTARQLFDEM 72 (340)
Q Consensus 57 ~~~~~~~~a~~~~~~~ 72 (340)
+..|+.+.+..+++.-
T Consensus 13 ~~~g~~~~v~~ll~~~ 28 (201)
T 3hra_A 13 ANQRDTKKVKEILQDT 28 (201)
T ss_dssp HHTTCHHHHHHHHTCT
T ss_pred HHhccHHHHHHHHHcC
Confidence 4556666666665543
No 347
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=25.79 E-value=2.6e+02 Score=22.44 Aligned_cols=64 Identities=16% Similarity=0.210 Sum_probs=46.5
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHcccCC---hhhHHHHHHHHhccCc--hhHHHHHHHHHhhcccCCCh
Q 044786 155 TGSLINFYGKFRCLEDADFVFSQLKRHN---TVVWTAKIVNNCREGH--FHQVFNDFKEMGRERIKKNS 218 (340)
Q Consensus 155 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~p~~ 218 (340)
...++.-|...|+.++|.+.++++..|. ..+...+..++-+.++ .+.+..++..+.+.|+-+..
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~ 237 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVD 237 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHH
Confidence 4578899999999999999999998762 2345555566665432 45677888888877765543
No 348
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=25.25 E-value=71 Score=21.81 Aligned_cols=18 Identities=6% Similarity=-0.022 Sum_probs=9.1
Q ss_pred HHHHhhcCHHHHHHHHHH
Q 044786 160 NFYGKFRCLEDADFVFSQ 177 (340)
Q Consensus 160 ~~~~~~~~~~~a~~~~~~ 177 (340)
...+..|+.+-+..+++.
T Consensus 106 ~~A~~~~~~~~v~~Ll~~ 123 (156)
T 1bd8_A 106 HLAVQEGHTAVVSFLAAE 123 (156)
T ss_dssp HHHHHHTCHHHHHHHHTT
T ss_pred HHHHHhChHHHHHHHHhc
Confidence 334455565555555544
No 349
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=24.76 E-value=97 Score=18.92 Aligned_cols=34 Identities=6% Similarity=0.042 Sum_probs=24.3
Q ss_pred CCCCCCcchhHHHHHHhhhccchhhHHHHHHHHH
Q 044786 4 LCLPITTDMYTCLIKECTFQKDSAGAFELLNHIR 37 (340)
Q Consensus 4 ~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 37 (340)
.++||+..||+.+...+-+..-...++.+...+-
T Consensus 30 PnLPpgVnTW~qI~el~qkk~i~~~~m~iik~iy 63 (81)
T 2ko4_A 30 PNIPPNINTWQQVTALAQQKLLTPQDMEAAKEVY 63 (81)
T ss_dssp SSCCTTTCBHHHHHHHHTTTSSCHHHHHHHHHHH
T ss_pred CCCCCCcchHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3789999999998887766655555666555544
No 350
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=24.27 E-value=2.1e+02 Score=23.21 Aligned_cols=44 Identities=7% Similarity=0.082 Sum_probs=28.6
Q ss_pred HHHHHhhcccCCChhhHHHHHHhcccCCchhchHHHHHHHHHHhC
Q 044786 205 DFKEMGRERIKKNSYTFSSVLKACGGVDDDGNCGRQMHANIVKIG 249 (340)
Q Consensus 205 ~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 249 (340)
+++.+.+.|+.|...++..++..++..=.++. +..+++.+...|
T Consensus 215 L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~-~lriWD~~l~eg 258 (334)
T 2qq8_A 215 LFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDL-ACRIWDVFCRDG 258 (334)
T ss_dssp HHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHH-HHHHHHHHHHHC
T ss_pred HHHHHHHcCCCccchHHHHHHHHhcccCCHHH-HHHHHHHHHHcC
Confidence 44455566777777777777777766555533 667777766665
No 351
>2bn5_A PSI; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster} PDB: 2bn6_A
Probab=23.85 E-value=75 Score=15.54 Aligned_cols=22 Identities=14% Similarity=0.306 Sum_probs=14.1
Q ss_pred HHHHhccCCHHHHHHHHHHhhc
Q 044786 261 VDMYGKCRLLRDAERVFELIVD 282 (340)
Q Consensus 261 i~~~~~~~~~~~A~~~~~~~~~ 282 (340)
+.-|-+.|..++|+.+-+.++.
T Consensus 9 ~eYYrsiG~~~eAeaIe~q~k~ 30 (33)
T 2bn5_A 9 AEYYRSVGKIEEAEAIEKTLKN 30 (33)
T ss_dssp HHHHHHHTCHHHHHHHHHHHTC
T ss_pred HHHHHHcccHHHHHHHHHHHHh
Confidence 4456666777777777666654
No 352
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=23.48 E-value=1.7e+02 Score=19.54 Aligned_cols=45 Identities=7% Similarity=-0.124 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhc
Q 044786 238 GRQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVD 282 (340)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 282 (340)
...+++.+....+.|+...--.-+......++++.|.++...+..
T Consensus 45 L~~LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 45 LALLREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445566666667766655444444455667888888888877653
No 353
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=22.67 E-value=1.6e+02 Score=18.93 Aligned_cols=27 Identities=7% Similarity=0.073 Sum_probs=13.2
Q ss_pred HHHHHHHHhhcccCCChhhHHHHHHhc
Q 044786 202 VFNDFKEMGRERIKKNSYTFSSVLKAC 228 (340)
Q Consensus 202 a~~~~~~m~~~~~~p~~~t~~~ll~~~ 228 (340)
|.++.++...-|+.|+..+...++..|
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC 54 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELC 54 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 344444455555555554444444444
No 354
>3crd_A Raidd; caspase recruitment domain, apoptosis, homophilic interaction; NMR {Homo sapiens} SCOP: a.77.1.3
Probab=22.51 E-value=1.4e+02 Score=18.96 Aligned_cols=44 Identities=11% Similarity=0.092 Sum_probs=28.6
Q ss_pred hcCHHHHHHHHHHcccCChhhHHHHHHHHhccCchhHHHHHHHHHhh
Q 044786 165 FRCLEDADFVFSQLKRHNTVVWTAKIVNNCREGHFHQVFNDFKEMGR 211 (340)
Q Consensus 165 ~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 211 (340)
.-..++|..+++.+..++..+|..++.++.. .......+.....
T Consensus 48 ~t~~~k~~~Lld~L~~rG~~Af~~F~~aL~~---~~~La~~L~~~~~ 91 (100)
T 3crd_A 48 TTGLRKTMLLLDILPSRGPKAFDTFLDSLQE---FPWVREKLKKARE 91 (100)
T ss_dssp SSSHHHHHHHHHHTTTSCSSCHHHHHHHCTT---HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHCHHHHHHHHHHHHh---CHHHHHHHHhhcc
Confidence 4556778888888887777888888877764 3333344444433
No 355
>3k8p_D Protein transport protein SEC39; intracellular trafficking, DSL1 complex, multisubunit tethering complex, snare proteins; 2.60A {Saccharomyces cerevisiae}
Probab=21.96 E-value=3.8e+02 Score=24.45 Aligned_cols=88 Identities=10% Similarity=0.058 Sum_probs=55.4
Q ss_pred ccHHHHHHHHHHHhccCCHHHHHHHHHHhhcCCcHHHHHHHHHH----HH-------HcCchHHHHHHHHHHHHcC---C
Q 044786 252 SDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIASWNAMLVG----YI-------RNGLYVEATKFLYLMKASG---I 317 (340)
Q Consensus 252 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~li~~----~~-------~~~~~~~a~~~~~~m~~~g---~ 317 (340)
+.......+++++...|+++.|.+++.....+-....|..++.+ |- +.|...+|.++++-+...- -
T Consensus 398 s~~~ie~~iL~~LL~~g~FsLa~~ly~~~~~~ve~~v~dvl~aaF~efyDNASNgNrtrG~mKkA~ecL~lf~~~~~~s~ 477 (709)
T 3k8p_D 398 SMDEKLYSILEILLQMNEFAYIEAIIERFDYSNNTQIYELLVKFFWHFFNNASNGLRKEPEMKKASQTLQIIQKHMSQRA 477 (709)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHCSSCCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCChHHHHHHHhccchhhhHHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHhcccccccch
Confidence 34445567888888999999999999876544334455555444 22 2356677777777764430 0
Q ss_pred ccchhHHHHHHHHhhhcCcccC
Q 044786 318 QIQESLINDLRIACSSISASKI 339 (340)
Q Consensus 318 ~~~~~t~~~ll~a~~~~g~~~~ 339 (340)
.+...-...+|.|....+..++
T Consensus 478 ~~~~~rl~aLL~At~aLS~YsL 499 (709)
T 3k8p_D 478 GTNLTKLEVLLEISDKLSHYSI 499 (709)
T ss_dssp THHHHHHHHHHHHHHHHTTSCC
T ss_pred hHHHHHHHHHHHHHHHhhhcee
Confidence 1234566777888777765543
No 356
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=21.44 E-value=5.4e+02 Score=24.59 Aligned_cols=113 Identities=9% Similarity=-0.082 Sum_probs=60.9
Q ss_pred HHHHHHhcCChhHHHHHHhhcCcCCcccHHHHHHHHHcccChhHHHHHHHHHHHhhcCCc------------------cc
Q 044786 52 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHM------------------LL 113 (340)
Q Consensus 52 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~------------------~~ 113 (340)
++..+...|..+-|.++..... .++..--.+.++|...|++++|..+|++.-.. .+.. ..
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~-~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~g-l~~~~~~~~~~~~~~~ll~~~e~~ 893 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLN-SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLV-LYSHTSQFAVLREFQEIAEKYHHQ 893 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCT-TCSSCCSCGGGHHHHHHHHHTTTC
T ss_pred HHHHHHHhcHHHHHHHHHhhcC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHhhh-cccCcccccchhhhhhccCccccc
Confidence 4444455555555554443333 23222223445555666666666666543210 0000 00
Q ss_pred cchHHHHHHHHHHhhhccchhhHHHHHHHHHHcCCCCch----hHHHHHHHHHHhhc
Q 044786 114 VFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNI----SLTGSLINFYGKFR 166 (340)
Q Consensus 114 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~ 166 (340)
.....=|..+++.+-+.+.++.+.++-+...+.--..|. ..+..+.++.+..|
T Consensus 894 ~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 894 NLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp SHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 122336788888888899998888888877765433333 35666777766554
No 357
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=21.01 E-value=2.3e+02 Score=20.21 Aligned_cols=59 Identities=12% Similarity=0.030 Sum_probs=37.0
Q ss_pred hhHHHHHHHHHHcCCCCc-hhHHHHHHHHHHhhcCHHHHHHHHHHcccCChhhHHHHHHH
Q 044786 134 ELGKQVHGLLFKLGSSRN-ISLTGSLINFYGKFRCLEDADFVFSQLKRHNTVVWTAKIVN 192 (340)
Q Consensus 134 ~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~ 192 (340)
+....+|..|...|+-.. ...|......+...|++.+|.++|+.-.+.++.....|-..
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L~~~ 136 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERLQSQ 136 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHH
Confidence 446677777777776543 34556666666777777777777776665555544444433
No 358
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=20.92 E-value=1.4e+02 Score=17.52 Aligned_cols=47 Identities=11% Similarity=-0.082 Sum_probs=36.4
Q ss_pred hhHHHHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcC
Q 044786 12 MYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCG 60 (340)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~ 60 (340)
.++.+++.+++..-.+.++..+++..+. |. .+..+|-.-++..++..
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~-g~-I~l~~ylK~vR~LaReQ 50 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHR-GT-IPLDTFVKQGRELARQQ 50 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-TS-SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc-CC-CCHHHHHHHHHHHHHHH
Confidence 5678888888888899999999999988 63 46677766676666644
No 359
>3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} SCOP: a.7.2.0
Probab=20.38 E-value=1.2e+02 Score=19.89 Aligned_cols=23 Identities=4% Similarity=0.001 Sum_probs=10.9
Q ss_pred HHHHHhccCchhHHHHHHHHHhh
Q 044786 189 KIVNNCREGHFHQVFNDFKEMGR 211 (340)
Q Consensus 189 li~~~~~~~~~~~a~~~~~~m~~ 211 (340)
|+.+..-..-..+.+++|+++..
T Consensus 85 LMta~~~~~la~e~I~lyk~~~~ 107 (109)
T 3k1s_A 85 LMNAITVKELAAEFIDLYKKLEA 107 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444444555555555543
No 360
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=20.37 E-value=3.4e+02 Score=21.88 Aligned_cols=50 Identities=20% Similarity=0.238 Sum_probs=41.3
Q ss_pred HHHHHHHHHhCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhhcCCcHHH
Q 044786 239 RQMHANIVKIGLESDEYVQCGLVDMYGKCRLLRDAERVFELIVDKKNIAS 288 (340)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~ 288 (340)
-.++..+.+.|+.|...++..++..+++.=.++.+.++|+.+...++...
T Consensus 213 P~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg~~~l 262 (334)
T 2qq8_A 213 PKLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDGEEFL 262 (334)
T ss_dssp HHHHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHcCCHHH
Confidence 35677888889999999999999999988889999999999887554433
No 361
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=20.11 E-value=2.6e+02 Score=20.40 Aligned_cols=54 Identities=11% Similarity=0.013 Sum_probs=26.1
Q ss_pred HHHHhhhccchhhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHhh
Q 044786 16 LIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDE 71 (340)
Q Consensus 16 li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 71 (340)
.+...++.|+.+....+++.-... -..++..-. ..+...+..|+.+-+..+++.
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~~~~~-~~~~~~~g~-t~L~~A~~~g~~~~v~~Ll~~ 62 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILADKSL-ATRTDQDSR-TALHWACSAGHTEIVEFLLQL 62 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHHCGGG-GGCCCTTSC-CHHHHHHHHTCHHHHHHHHHT
T ss_pred hHHHHHHhCCHHHHHHHHHhchhh-hhcCCCCCC-CHHHHHHHcCcHHHHHHHHHh
Confidence 355556677777766666543221 111121111 223334556666666666554
Done!