Query 044788
Match_columns 483
No_of_seqs 167 out of 1686
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 06:45:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044788.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044788hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00906 2A0303 cationic amin 100.0 2.6E-55 5.6E-60 450.1 43.5 423 36-465 23-556 (557)
2 PRK10655 potE putrescine trans 100.0 4.7E-55 1E-59 440.8 44.2 420 38-466 3-434 (438)
3 PRK15049 L-asparagine permease 100.0 2.9E-54 6.2E-59 438.6 47.9 394 36-435 23-441 (499)
4 PRK10644 arginine:agmatin anti 100.0 5.1E-54 1.1E-58 433.6 46.8 417 36-464 3-432 (445)
5 TIGR00908 2A0305 ethanolamine 100.0 7.4E-54 1.6E-58 432.6 46.2 422 36-464 2-434 (442)
6 PRK11357 frlA putative fructos 100.0 5.7E-54 1.2E-58 433.6 43.3 424 36-464 3-439 (445)
7 KOG1287 Amino acid transporter 100.0 3.2E-55 7E-60 421.9 31.9 425 35-464 6-444 (479)
8 PRK11387 S-methylmethionine tr 100.0 6.3E-53 1.4E-57 428.1 45.2 419 37-462 10-458 (471)
9 TIGR00911 2A0308 L-type amino 100.0 7.7E-53 1.7E-57 431.1 44.7 434 32-470 33-481 (501)
10 TIGR00909 2A0306 amino acid tr 100.0 3.2E-52 7E-57 419.8 43.4 413 39-458 1-428 (429)
11 PRK10746 putative transport pr 100.0 1.2E-51 2.6E-56 416.2 46.0 424 36-467 5-456 (461)
12 TIGR00905 2A0302 transporter, 100.0 7.6E-52 1.6E-56 420.4 44.7 417 39-464 5-440 (473)
13 PRK10249 phenylalanine transpo 100.0 2.5E-51 5.4E-56 414.3 45.0 377 36-419 16-414 (458)
14 PRK10435 cadB lysine/cadaverin 100.0 4.1E-51 8.9E-56 410.7 44.3 412 38-466 2-430 (435)
15 PRK10836 lysine transporter; P 100.0 1.1E-50 2.4E-55 413.3 46.2 378 36-420 10-422 (489)
16 PRK10238 aromatic amino acid t 100.0 1.6E-50 3.4E-55 408.2 46.1 381 34-421 5-407 (456)
17 PRK11049 D-alanine/D-serine/gl 100.0 1.7E-50 3.6E-55 409.8 46.1 376 37-419 16-418 (469)
18 TIGR01773 GABAperm gamma-amino 100.0 1.9E-50 4.1E-55 408.7 45.2 416 36-459 7-448 (452)
19 PRK10580 proY putative proline 100.0 4.3E-50 9.4E-55 406.1 45.5 417 36-460 4-447 (457)
20 TIGR03810 arg_ornith_anti argi 100.0 7.5E-50 1.6E-54 405.3 44.5 412 41-463 1-434 (468)
21 TIGR00913 2A0310 amino acid pe 100.0 1.3E-49 2.9E-54 405.7 45.7 420 40-465 1-466 (478)
22 COG1113 AnsP Gamma-aminobutyra 100.0 2.7E-49 5.9E-54 374.2 37.7 422 35-464 7-454 (462)
23 PRK10197 gamma-aminobutyrate t 100.0 1.7E-48 3.6E-53 392.4 45.3 408 51-465 2-434 (446)
24 COG0833 LysP Amino acid transp 100.0 3.4E-49 7.4E-54 381.3 36.4 422 38-464 41-501 (541)
25 PRK11021 putative transporter; 100.0 7.8E-48 1.7E-52 384.8 45.2 376 43-442 1-387 (410)
26 TIGR03813 put_Glu_GABA_T putat 100.0 5E-46 1.1E-50 378.2 47.0 371 41-417 1-400 (474)
27 TIGR00907 2A0304 amino acid pe 100.0 1.5E-46 3.2E-51 383.5 38.9 397 34-432 5-438 (482)
28 TIGR03428 ureacarb_perm permea 100.0 1.6E-45 3.4E-50 374.4 45.1 398 33-436 5-442 (475)
29 TIGR00910 2A0307_GadC glutamat 100.0 1.7E-45 3.7E-50 374.7 44.5 373 39-416 2-402 (507)
30 TIGR00930 2a30 K-Cl cotranspor 100.0 2.8E-45 6E-50 391.2 44.9 415 36-459 71-536 (953)
31 COG0531 PotE Amino acid transp 100.0 2.7E-44 5.8E-49 367.1 43.0 381 35-417 6-404 (466)
32 KOG1286 Amino acid transporter 100.0 2.2E-45 4.8E-50 368.4 32.3 384 36-421 25-447 (554)
33 KOG1289 Amino acid transporter 100.0 4.6E-45 1E-49 351.6 29.9 424 32-459 39-509 (550)
34 PF13520 AA_permease_2: Amino 100.0 4.8E-44 1E-48 360.5 37.4 361 43-408 1-381 (426)
35 PRK15238 inner membrane transp 100.0 1.2E-41 2.5E-46 347.6 46.9 371 38-413 4-432 (496)
36 PF00324 AA_permease: Amino ac 100.0 2.6E-44 5.7E-49 366.5 7.6 369 48-417 2-412 (478)
37 TIGR00837 araaP aromatic amino 100.0 1.7E-29 3.7E-34 250.4 30.3 358 49-420 3-375 (381)
38 TIGR00912 2A0309 spore germina 99.9 3.5E-22 7.5E-27 196.5 32.6 286 41-334 1-294 (359)
39 KOG1288 Amino acid transporter 99.9 4.9E-23 1.1E-27 201.0 21.0 366 64-441 91-506 (945)
40 KOG2082 K+/Cl- cotransporter K 99.9 3.6E-22 7.8E-27 196.4 26.9 417 41-469 113-655 (1075)
41 TIGR00796 livcs branched-chain 99.9 2.3E-20 4.9E-25 180.3 35.9 337 54-415 6-367 (378)
42 PF03222 Trp_Tyr_perm: Tryptop 99.9 7E-20 1.5E-24 179.9 37.1 367 42-420 2-381 (394)
43 PRK10483 tryptophan permease; 99.9 4.4E-19 9.6E-24 172.4 36.3 375 38-424 6-393 (414)
44 PHA02764 hypothetical protein; 99.9 8.3E-21 1.8E-25 170.2 22.0 279 33-356 4-285 (399)
45 PRK09664 tryptophan permease T 99.9 1E-18 2.2E-23 169.6 35.9 371 44-427 10-397 (415)
46 PRK15132 tyrosine transporter 99.9 1.8E-18 4E-23 169.0 36.8 366 44-424 4-382 (403)
47 TIGR00814 stp serine transport 99.9 3.7E-19 8E-24 174.4 26.9 292 46-338 6-313 (397)
48 COG0814 SdaC Amino acid permea 99.8 2.3E-16 5.1E-21 156.1 36.7 287 38-325 4-304 (415)
49 PRK13629 threonine/serine tran 99.8 1.3E-16 2.7E-21 155.1 32.5 291 47-338 23-348 (443)
50 KOG2083 Na+/K+ symporter [Inor 99.7 8.2E-17 1.8E-21 156.7 19.2 399 37-444 24-453 (643)
51 PF03845 Spore_permease: Spore 99.7 5E-14 1.1E-18 136.1 27.6 285 42-335 1-291 (320)
52 KOG1303 Amino acid transporter 99.6 6.8E-13 1.5E-17 130.5 28.3 346 37-397 32-396 (437)
53 KOG1304 Amino acid transporter 99.6 2.2E-12 4.7E-17 124.9 28.0 356 39-414 43-424 (449)
54 COG3949 Uncharacterized membra 99.5 4.8E-11 1E-15 109.4 31.1 268 47-327 7-280 (349)
55 PF01235 Na_Ala_symp: Sodium:a 99.5 2.9E-11 6.4E-16 117.4 30.2 292 36-336 12-338 (416)
56 PLN03074 auxin influx permease 99.5 3.1E-11 6.7E-16 121.6 29.0 224 52-284 55-294 (473)
57 PTZ00206 amino acid transporte 99.5 1.2E-10 2.6E-15 117.9 31.3 237 46-284 63-319 (467)
58 COG1115 AlsT Na+/alanine sympo 99.4 2.1E-09 4.6E-14 103.2 32.8 290 38-336 58-382 (452)
59 TIGR00835 agcS amino acid carr 99.3 3.5E-09 7.6E-14 103.6 30.7 285 41-335 45-364 (425)
60 PRK11375 allantoin permease; P 99.3 1.9E-08 4E-13 102.1 34.9 315 36-370 20-362 (484)
61 PF01490 Aa_trans: Transmembra 99.1 1.7E-12 3.7E-17 130.3 -4.8 354 41-403 1-375 (409)
62 COG1457 CodB Purine-cytosine p 99.0 1.6E-06 3.4E-11 85.1 32.3 224 91-329 69-294 (442)
63 PRK11017 codB cytosine permeas 99.0 2E-05 4.3E-10 78.6 38.8 186 73-268 42-229 (404)
64 PRK09442 panF sodium/panthothe 99.0 2.2E-05 4.7E-10 80.4 39.3 289 38-338 38-350 (483)
65 PF05525 Branch_AA_trans: Bran 99.0 9.3E-06 2E-10 79.8 33.9 317 53-393 13-349 (427)
66 TIGR02119 panF sodium/pantothe 98.9 4.3E-05 9.4E-10 78.1 38.6 289 38-338 37-349 (471)
67 TIGR02121 Na_Pro_sym sodium/pr 98.9 6.3E-05 1.4E-09 77.1 38.6 290 39-338 34-349 (487)
68 KOG1305 Amino acid transporter 98.8 8.3E-07 1.8E-11 87.3 22.2 351 41-403 4-374 (411)
69 TIGR00813 sss transporter, SSS 98.8 3.7E-05 8.1E-10 77.0 31.6 287 40-338 2-325 (407)
70 COG1953 FUI1 Cytosine/uracil/t 98.7 0.00024 5.2E-09 70.1 33.3 316 36-370 34-376 (497)
71 TIGR00800 ncs1 NCS1 nucleoside 98.6 0.00017 3.6E-09 73.0 32.6 234 38-276 9-261 (442)
72 PRK12488 acetate permease; Pro 98.6 0.00055 1.2E-08 71.1 35.3 149 39-196 65-218 (549)
73 PRK10484 putative transporter; 98.6 0.0014 3.1E-08 67.8 41.6 289 38-331 35-354 (523)
74 PRK15433 branched-chain amino 98.6 0.00046 9.9E-09 68.1 32.1 331 53-412 18-373 (439)
75 COG1114 BrnQ Branched-chain am 98.6 0.00087 1.9E-08 64.5 35.6 337 50-412 12-372 (431)
76 PRK15419 proline:sodium sympor 98.6 0.0016 3.5E-08 67.0 39.4 290 38-338 37-356 (502)
77 PRK09395 actP acetate permease 98.5 0.00096 2.1E-08 69.4 35.0 151 38-195 66-219 (551)
78 COG0591 PutP Na+/proline sympo 98.5 0.00034 7.3E-09 71.5 30.8 290 37-331 34-352 (493)
79 TIGR02358 thia_cytX probable h 98.5 0.0017 3.6E-08 64.4 37.3 244 74-334 30-274 (386)
80 PF00474 SSF: Sodium:solute sy 98.5 2.8E-05 6.1E-10 77.9 22.3 289 40-339 5-324 (406)
81 TIGR02711 symport_actP cation/ 98.5 0.0024 5.2E-08 66.4 36.7 283 39-329 65-379 (549)
82 COG0733 Na+-dependent transpor 98.4 0.0018 3.8E-08 63.4 31.5 276 45-326 11-325 (439)
83 TIGR03648 Na_symport_lg probab 98.4 0.0018 3.8E-08 67.5 32.6 147 38-193 29-180 (552)
84 PRK00701 manganese transport p 98.3 0.0044 9.5E-08 62.3 34.2 64 88-151 75-140 (439)
85 PF02705 K_trans: K+ potassium 98.3 0.0011 2.5E-08 66.7 28.2 294 91-398 52-373 (534)
86 PF01566 Nramp: Natural resist 98.2 0.0024 5.3E-08 62.7 28.2 252 74-335 14-284 (358)
87 COG1914 MntH Mn2+ and Fe2+ tra 98.2 0.0081 1.7E-07 59.3 31.2 110 87-203 57-168 (416)
88 PF02133 Transp_cyt_pur: Perme 98.2 2.9E-05 6.3E-10 78.7 13.6 231 39-273 5-252 (440)
89 PLN00150 potassium ion transpo 98.1 0.00064 1.4E-08 70.8 22.1 250 130-393 186-451 (779)
90 TIGR00794 kup potassium uptake 98.0 0.0015 3.3E-08 67.6 22.1 258 127-396 137-408 (688)
91 PRK10745 trkD potassium transp 98.0 0.0028 6.1E-08 64.6 23.5 296 90-399 64-385 (622)
92 PLN00149 potassium transporter 97.9 0.0028 6E-08 66.4 22.9 255 129-393 168-438 (779)
93 KOG4303 Vesicular inhibitory a 97.8 0.00015 3.2E-09 67.3 10.5 241 37-282 111-361 (524)
94 PLN00151 potassium transporter 97.8 0.0016 3.6E-08 68.0 18.7 251 129-393 245-511 (852)
95 PLN00148 potassium transporter 97.8 0.0024 5.1E-08 66.8 19.9 253 127-393 166-434 (785)
96 COG3158 Kup K+ transporter [In 97.5 0.0086 1.9E-07 59.7 17.8 303 87-402 67-393 (627)
97 COG4145 PanF Na+/panthothenate 97.4 0.15 3.2E-06 48.6 29.0 279 38-330 36-343 (473)
98 PF02028 BCCT: BCCT family tra 97.2 0.29 6.3E-06 49.7 30.2 160 36-196 68-260 (485)
99 COG4147 DhlC Predicted symport 96.9 0.51 1.1E-05 46.7 30.9 283 75-371 79-409 (529)
100 PF00209 SNF: Sodium:neurotran 95.0 5.2 0.00011 41.6 21.4 92 173-265 194-292 (523)
101 PF13906 AA_permease_C: C-term 94.9 0.09 1.9E-06 35.0 5.2 49 410-462 1-49 (51)
102 PRK09928 choline transport pro 94.2 9 0.00019 40.5 29.5 91 306-399 408-501 (679)
103 KOG3659 Sodium-neurotransmitte 94.1 7.9 0.00017 39.8 25.8 105 160-264 255-366 (629)
104 PRK03356 L-carnitine/gamma-but 91.7 17 0.00038 37.2 30.9 155 39-196 82-273 (504)
105 KOG2466 Uridine permease/thiam 90.1 22 0.00049 35.7 18.9 293 36-345 49-379 (572)
106 PRK09950 putative transporter; 90.0 25 0.00055 36.1 29.8 19 40-58 81-99 (506)
107 TIGR00842 bcct choline/carniti 89.5 25 0.00055 35.5 28.3 20 39-58 33-52 (453)
108 TIGR01197 nramp NRAMP (natural 87.8 31 0.00066 34.3 33.6 36 294-329 283-318 (390)
109 PRK15049 L-asparagine permease 84.7 52 0.0011 34.0 31.9 51 406-458 417-467 (499)
110 PF02554 CstA: Carbon starvati 84.5 42 0.00091 32.7 20.0 99 45-145 54-154 (376)
111 COG1292 BetT Choline-glycine b 83.9 54 0.0012 33.6 26.9 152 37-193 82-270 (537)
112 KOG2349 Na+:iodide/myo-inosito 82.1 69 0.0015 33.4 18.3 285 40-334 44-362 (585)
113 COG4146 Predicted symporter [G 80.0 62 0.0013 31.5 23.2 224 107-335 105-358 (571)
114 COG4858 Uncharacterized membra 76.8 37 0.00081 29.3 9.7 12 358-369 101-112 (226)
115 PF14256 YwiC: YwiC-like prote 69.4 61 0.0013 26.5 10.8 24 380-403 29-52 (129)
116 PF05525 Branch_AA_trans: Bran 64.7 1.5E+02 0.0033 29.7 12.9 75 109-187 265-339 (427)
117 PF05961 Chordopox_A13L: Chord 64.5 13 0.00028 26.0 3.7 21 445-465 9-29 (68)
118 PF01102 Glycophorin_A: Glycop 64.3 9.2 0.0002 30.8 3.5 12 452-463 82-93 (122)
119 PF06570 DUF1129: Protein of u 64.0 79 0.0017 28.2 9.9 10 450-459 185-194 (206)
120 COG2271 UhpC Sugar phosphate p 63.5 1.7E+02 0.0036 29.4 12.7 46 316-370 67-112 (448)
121 PRK11281 hypothetical protein; 61.6 3E+02 0.0065 31.6 16.8 30 249-278 536-565 (1113)
122 TIGR00796 livcs branched-chain 60.8 1.8E+02 0.0039 28.8 14.5 75 109-187 259-333 (378)
123 PHA03049 IMV membrane protein; 59.5 15 0.00033 25.5 3.3 22 445-466 9-30 (68)
124 PTZ00206 amino acid transporte 59.4 1.4E+02 0.0031 30.4 12.1 56 291-346 121-176 (467)
125 PF12794 MscS_TM: Mechanosensi 59.1 1.8E+02 0.0039 28.3 19.7 38 242-279 29-70 (340)
126 PF11085 YqhR: Conserved membr 56.6 1.3E+02 0.0028 25.8 10.9 10 115-124 96-105 (173)
127 TIGR00837 araaP aromatic amino 52.1 2.4E+02 0.0052 27.7 24.1 20 351-370 308-327 (381)
128 PF03806 ABG_transport: AbgT p 48.1 2.8E+02 0.006 28.6 11.5 93 87-185 307-405 (502)
129 KOG3660 Sodium-neurotransmitte 45.3 4.1E+02 0.0089 28.4 24.2 65 44-110 39-106 (629)
130 KOG1278 Endosomal membrane pro 44.7 3.8E+02 0.0083 27.8 13.8 37 176-212 262-298 (628)
131 PF14007 YtpI: YtpI-like prote 43.7 1.4E+02 0.0031 22.6 7.9 23 436-458 54-76 (89)
132 PRK12489 anaerobic C4-dicarbox 41.3 3.4E+02 0.0074 27.5 11.0 18 353-370 83-100 (443)
133 KOG1289 Amino acid transporter 41.0 4.3E+02 0.0094 27.4 16.1 79 70-149 284-369 (550)
134 TIGR01478 STEVOR variant surfa 38.5 76 0.0016 29.5 5.4 24 446-469 269-292 (295)
135 COG4025 Predicted membrane pro 36.6 3.3E+02 0.0071 24.7 10.0 16 327-342 55-70 (284)
136 PTZ00370 STEVOR; Provisional 35.3 82 0.0018 29.4 5.1 24 446-469 265-288 (296)
137 PF15050 SCIMP: SCIMP protein 35.1 55 0.0012 25.9 3.4 18 447-464 19-36 (133)
138 PRK00968 tetrahydromethanopter 33.5 59 0.0013 28.7 3.7 31 245-275 204-235 (240)
139 PRK10263 DNA translocase FtsK; 33.2 8.6E+02 0.019 28.5 17.2 17 264-280 30-46 (1355)
140 PF07332 DUF1469: Protein of u 33.0 93 0.002 24.8 4.8 22 443-464 77-98 (121)
141 PRK15433 branched-chain amino 32.7 5.4E+02 0.012 26.1 15.3 74 109-187 269-342 (439)
142 PRK09804 putative cryptic C4-d 32.0 5.6E+02 0.012 26.0 11.6 32 339-370 97-128 (455)
143 PF03825 Nuc_H_symport: Nucleo 31.3 4.1E+02 0.009 26.4 10.1 25 345-369 57-81 (400)
144 PF02009 Rifin_STEVOR: Rifin/s 30.9 61 0.0013 30.7 3.8 19 446-464 266-284 (299)
145 PHA02681 ORF089 virion membran 30.0 1.5E+02 0.0032 21.8 4.6 20 444-463 9-28 (92)
146 COG3949 Uncharacterized membra 29.0 5.4E+02 0.012 24.9 17.5 105 260-384 39-145 (349)
147 PF11174 DUF2970: Protein of u 28.9 1.7E+02 0.0036 20.0 4.6 25 226-250 3-27 (56)
148 PHA02902 putative IMV membrane 28.8 1.4E+02 0.003 20.8 4.1 19 445-463 10-28 (70)
149 PF04246 RseC_MucC: Positive r 28.2 3.2E+02 0.007 22.2 7.3 17 439-455 97-113 (135)
150 PRK13108 prolipoprotein diacyl 27.7 3.4E+02 0.0075 27.6 8.6 15 443-457 259-273 (460)
151 COG1346 LrgB Putative effector 27.6 2.7E+02 0.0059 25.2 7.0 23 438-460 62-84 (230)
152 COG3965 Predicted Co/Zn/Cd cat 27.5 5E+02 0.011 24.1 11.8 48 416-463 90-149 (314)
153 TIGR02230 ATPase_gene1 F0F1-AT 27.0 3E+02 0.0065 21.3 6.5 24 441-464 75-98 (100)
154 TIGR00659 conserved hypothetic 26.0 2.8E+02 0.006 25.2 6.9 27 438-464 59-85 (226)
155 TIGR00819 ydaH p-Aminobenzoyl- 25.9 7.1E+02 0.015 25.8 10.5 94 87-186 314-413 (513)
156 PRK04288 antiholin-like protei 25.9 3E+02 0.0066 25.0 7.1 26 438-463 65-90 (232)
157 COG4060 MtrD Tetrahydromethano 24.4 1E+02 0.0022 26.3 3.5 31 245-275 194-225 (230)
158 PF08693 SKG6: Transmembrane a 23.1 28 0.00061 21.8 0.0 8 450-457 27-34 (40)
159 PF05297 Herpes_LMP1: Herpesvi 22.9 28 0.00061 32.2 0.0 17 347-363 13-29 (381)
160 PF07226 DUF1422: Protein of u 22.5 4E+02 0.0087 21.2 11.4 16 450-465 100-115 (117)
161 COG1114 BrnQ Branched-chain am 21.0 8.5E+02 0.018 24.4 15.3 74 109-186 267-340 (431)
162 PF06939 DUF1286: Protein of u 20.2 3.5E+02 0.0077 21.3 5.4 16 253-268 66-81 (114)
No 1
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=100.00 E-value=2.6e-55 Score=450.09 Aligned_cols=423 Identities=22% Similarity=0.266 Sum_probs=357.9
Q ss_pred cccccccccchhHHHhhhhhhcc-cccCchhhHh--hhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCChHHHhHH
Q 044788 36 ITVTSKKLSLLPLIFLIYFEVAG-GPYGEEPAVG--AAGPLFAILGFLIFPFIWSIPEALVTAELATTFPGNGGYVIWAH 112 (483)
Q Consensus 36 ~~~~~r~l~~~~~~~~~i~~~iG-g~~~~~~~~~--~~G~~~~i~~~~~~~~~~~~~~~l~~~el~~~~p~~Gg~y~~~~ 112 (483)
+++++|+++.++++++++|.++| |+|.+++... .+|| ..+++|+++++. +++.+++|+|+++++|++||.|.|++
T Consensus 23 ~~~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp-~~~ls~liagv~-~l~~al~yaElas~~P~sGg~Y~y~~ 100 (557)
T TIGR00906 23 ESKMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGP-AIVLSFLISGLA-AVLSGFCYAEFGARVPKAGSAYLYSY 100 (557)
T ss_pred ccchhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCc-HHHHHHHHHHHH-HHHHHHHHHHHHHhCCCCCcceeeHH
Confidence 44689999999999999999999 8888877643 3899 588999999998 99999999999999999999999999
Q ss_pred HHhCChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcccc-----------ccc---hHHHHHHHHHHHHHHHHHhhch
Q 044788 113 HAFGPFWGSLMGSWKFLSGVINLASYPILCIDYLKLVFPIF-----------ASG---FSHYLAIFVVTLVLSFLNYTGL 178 (483)
Q Consensus 113 ~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~---~~~~~~~~~~~~~~~~i~~~g~ 178 (483)
+.+|+.+||++||.+++++....+..+...+.|+..+++.. ..+ ......+++++++++.+|++|+
T Consensus 101 ~~~G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~a~~ii~l~~~ln~~Gi 180 (557)
T TIGR00906 101 VTVGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLLAVLLSFGV 180 (557)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHHHHHHHHHHHHHHHhch
Confidence 99999999999999999999999998888888887665320 001 1223456667778889999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCC---CC-CCCchHHHH---HHHHHHhcchHhhhhhhhhccCc
Q 044788 179 AIVGYTAVTLGVVSLIPFLFLTVIAIPKIDSIRWISLGQ---NG-VPKNWRLFF---NTLFWNLNFWDNASTLAGEVEQP 251 (483)
Q Consensus 179 ~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~---~~-~~~~~~~~~---~~~~~a~~G~e~~~~~~~E~k~p 251 (483)
|.++++|.+++.++++.++++++.++.+.+.+++..... ++ .+.++.+++ ...+|+|.|+|.+++++||+|||
T Consensus 181 k~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~knP 260 (557)
T TIGR00906 181 KESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEEVKNP 260 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHhHHhccCc
Confidence 999999999999999988888888877766666542111 01 133444443 45789999999999999999999
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCccccHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 044788 252 QRTFPKALFSAGLLTCVAYLLPLLAATGAIPLDQQNWVDGYFAEVAEIIAGKWLKICIEIGACLSIIGLYEAQLSNCAYQ 331 (483)
Q Consensus 252 ~r~~p~a~~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~ 331 (483)
+||+||+++.++.+++++|++...+..+..|+++.+ .+.|+...++..+.++...++.++.+++.+++.++.+++.+|+
T Consensus 261 ~r~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~-~~~p~~~a~~~~g~~~~~~ii~~~~~~~~~~sl~~~~~~~sRi 339 (557)
T TIGR00906 261 QRAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLD-PDAPFPVAFEYVGWGPAKYIVAVGALCGMSTSLLGGMFPLPRV 339 (557)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhccccHHHhC-cCcHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999887665 4568888888888788888889999999999999999999999
Q ss_pred HHHhhhcCCCchhhhccCCCCCCCHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------
Q 044788 332 ILGMTNLGLLPKVFGSRSSWFHTPWVGIFISTLIALTVS-YMDFTNIISCVNFLYSLGMLLEFASFLWLRKK-------- 402 (483)
Q Consensus 332 l~~~a~dg~lP~~~~~~~~~~~~P~~ai~~~~i~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~-------- 402 (483)
+++|||||.+|++|+|+|||+++|++++++..+++.++. +.+++.+.++.+++.++.|.+++++++.+|++
T Consensus 340 l~amarDGlLP~~fakv~~r~~tP~~Ail~~~iv~~il~~~~~~~~l~~l~sig~ll~y~lv~~~~l~lR~~~~~~~~~~ 419 (557)
T TIGR00906 340 IYAMARDGLLFKWLAQINSKTKTPINATVVSGAIAALMAFLFDLKALVDLLSIGTLLAYSLVAACVLILRYQPGLVYGQA 419 (557)
T ss_pred HHHHHcCCCccHHHhccCCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccc
Confidence 999999999999999999999999999999999987766 56789999999999999999999999998843
Q ss_pred ----------------------------------------------------------------------------CCCC
Q 044788 403 ----------------------------------------------------------------------------LPAT 406 (483)
Q Consensus 403 ----------------------------------------------------------------------------~~~~ 406 (483)
+|+.
T Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (557)
T TIGR00906 420 KDTDEKDTLDSWVPFTSKSESQSEGFSLRTLFSGLILGLSILTTYGRAAIAEEAWSIALLTLFLVLFLLVVLTIWRQPQN 499 (557)
T ss_pred ccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3333
Q ss_pred --CCCcccCchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 044788 407 --KRPFRVPMEMLGLIFMCIIPSGFLVYVMVVATKMVCFVSALLTFFGIFLYFFIKLCRSN 465 (483)
Q Consensus 407 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 465 (483)
+|+||.|..++. ..++...+++.+...++.+++...+|+++|+++|+.|-+++.+
T Consensus 500 ~~~~~f~~p~~p~~----p~~~i~~~~~l~~~l~~~~~~~~~~w~~~g~~~y~~yg~~~s~ 556 (557)
T TIGR00906 500 KQKVAFKVPLVPFL----PALSILINIFLMVQLDADTWVRFAIWMAIGFLIYFLYGIRHSL 556 (557)
T ss_pred CCCCCCCCCCchHH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhhhccC
Confidence 567888887543 3445667778888889999999999999999999998776654
No 2
>PRK10655 potE putrescine transporter; Provisional
Probab=100.00 E-value=4.7e-55 Score=440.84 Aligned_cols=420 Identities=18% Similarity=0.212 Sum_probs=347.7
Q ss_pred cccccccchhHHHhhhhhhcc-cccCchhhHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCChHHHhHHHHhC
Q 044788 38 VTSKKLSLLPLIFLIYFEVAG-GPYGEEPAVGAAGPLFAILGFLIFPFIWSIPEALVTAELATTFPGNGGYVIWAHHAFG 116 (483)
Q Consensus 38 ~~~r~l~~~~~~~~~i~~~iG-g~~~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~l~~~el~~~~p~~Gg~y~~~~~~~g 116 (483)
+++|++++++++++++|+++| |++..|..++.+|+ ..+++|++++++ .++.+++|+|+++++|++||.|.|+++.+|
T Consensus 3 ~~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~~~G~-~~~~~w~i~~~~-~~~~a~~~aeL~~~~P~~GG~y~y~~~~~G 80 (438)
T PRK10655 3 AKSNKMGVVQLTILTAVNMMGSGIIMLPTKLAQVGT-ISILSWLVTAVG-SMALAYAFAKCGMFSRKSGGMGGYAEYAFG 80 (438)
T ss_pred CccCcccHHHHHHHHHHhhhhhHHHHhHHHHHHhhH-HHHHHHHHHHHH-HHHHHHHHHHHhhhCCCCCchHHHHHHHcC
Confidence 357899999999999999999 88888888877888 567899999998 999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHH
Q 044788 117 PFWGSLMGSWKFLSGVINLASYPILCIDYLKLVFPIFASGFSHYLAIFVVTLVLSFLNYTGLAIVGYTAVTLGVVSLIPF 196 (483)
Q Consensus 117 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~~ 196 (483)
|..||++||.+++.+.......+....+|+..++|...++++..++.+++++..+.+|++|+|..+++|.+.+..+++.+
T Consensus 81 ~~~gf~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~ln~~g~~~~~~i~~i~~~~~l~~l 160 (438)
T PRK10655 81 KSGNFMANYTYGVSLLIANVAIAISAVGYGTELFGATLSPVQICLATIGVLWLCTVANFGGARITGQISSVTVWGVIIPV 160 (438)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888776667777788888887544556667777788888999999999999999999888888877
Q ss_pred HHHHHHHhccccccccccc-CCCCCC--CchHHHHHHHHHHhcchHhhhhhhhhccCcCcchHHHHHHHHHHHHHHHHHH
Q 044788 197 LFLTVIAIPKIDSIRWISL-GQNGVP--KNWRLFFNTLFWNLNFWDNASTLAGEVEQPQRTFPKALFSAGLLTCVAYLLP 273 (483)
Q Consensus 197 ~~~~i~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~a~~G~e~~~~~~~E~k~p~r~~p~a~~~~~~~~~~~y~l~ 273 (483)
+++.+.++...+++++.+. .+.+.+ .++...+...+|+|.|+|.+++++||+|||+||+||+++.+..+++++|++.
T Consensus 161 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iPrAi~~~~~~~~~~Y~l~ 240 (438)
T PRK10655 161 VGLSIIGWFWFSPSLYVAAWNPHHLPFFSAVGSSIAMTLWAFLGLESACANSDAVENPERNVPIAVLGGTLGAAVIYIVS 240 (438)
T ss_pred HHHHHHHHHHhCcccccCCcCccCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCccccccHHHHHHHHHHHHHHHHH
Confidence 7776666554444444221 111111 1233334557899999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCCCCCccccHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCCCchhhhccCCCCC
Q 044788 274 LLAATGAIPLDQQNWVDGYFAEVAEIIAGKWLKICIEIGACLSIIGLYEAQLSNCAYQILGMTNLGLLPKVFGSRSSWFH 353 (483)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~~~~~~~~~~ 353 (483)
........|++++..++.|..+..++..+++...++....+++.+++.++...+.+|++++++|||.+|++|+|+|| ++
T Consensus 241 ~~~~~~~~~~~~l~~~~~p~~~~~~~~~g~~~~~~~~~~~~is~~~~~~~~~~~~sR~~~~~a~dg~lP~~~~~v~~-~~ 319 (438)
T PRK10655 241 TNVIAGIVPNMELANSTAPFGLAFAQMFNPTVGKIVMALMVMSCCGSLLGWQFTIAQVFKSSADEGYFPKIFSRVTK-VD 319 (438)
T ss_pred HHHHHhCCCHHHHhhccchHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHhhCc-CC
Confidence 88888888888777677899998888888888888888888999999999999999999999999999999999996 79
Q ss_pred CCHHHHHHHHHHHHHHHh--------cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccCchhHHHHHHHHH
Q 044788 354 TPWVGIFISTLIALTVSY--------MDFTNIISCVNFLYSLGMLLEFASFLWLRKKLPATKRPFRVPMEMLGLIFMCII 425 (483)
Q Consensus 354 ~P~~ai~~~~i~~~~~~~--------~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (483)
+|++++++..+++.++.+ ..++.+.++.++...+.|.+.+++.+++|+|+|+.+||||.+. ++..+
T Consensus 320 tP~~all~~~~i~~~l~l~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~~~~~lr~~~~~~~~~~~~~~------~~~~~ 393 (438)
T PRK10655 320 APVQGMLIIVVIQSLLSLMTISPSLNSQFNVLVNLAVVTNIIPYILSMAALVIIQKVANVPPSKAKVAN------FIAFV 393 (438)
T ss_pred CCHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcchhHHHH------HHHHH
Confidence 999999998887765442 1478899999999999999999999999999888888888632 22333
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 044788 426 PSGFLVYVMVVATKMVCFVSALLTFFGIFLYFFIKLCRSNK 466 (483)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 466 (483)
+.+++++..+..+......+.+++++|+++|.+.++++++|
T Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~~ 434 (438)
T PRK10655 394 GALYSFYALYSSGEEAMLYGSIVTFLGWTLYGLISPRFELK 434 (438)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 34444444445556667778899999999998766655444
No 3
>PRK15049 L-asparagine permease; Provisional
Probab=100.00 E-value=2.9e-54 Score=438.63 Aligned_cols=394 Identities=15% Similarity=0.190 Sum_probs=317.6
Q ss_pred cccccccccchhHHHhhhhhhcc-cccCchh-hHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCChHHHhHHH
Q 044788 36 ITVTSKKLSLLPLIFLIYFEVAG-GPYGEEP-AVGAAGPLFAILGFLIFPFIWSIPEALVTAELATTFPGNGGYVIWAHH 113 (483)
Q Consensus 36 ~~~~~r~l~~~~~~~~~i~~~iG-g~~~~~~-~~~~~G~~~~i~~~~~~~~~~~~~~~l~~~el~~~~p~~Gg~y~~~~~ 113 (483)
++++||+++.+++.++++|.++| |+|..++ .+..+|| ..+++|++++++ .++.+++++||++++|++||.|+|+++
T Consensus 23 ~~~l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp-~~il~~li~~i~-~~~v~~slaELas~~P~aGg~y~y~~~ 100 (499)
T PRK15049 23 EEGYHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGP-ALALVYLICGLF-SFFILRALGELVLHRPSSGSFVSYARE 100 (499)
T ss_pred chhhhccCCHhHhHHHhhhccccchHHHhhHHHHHhcCC-HHHHHHHHHHHH-HHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence 34589999999999999999999 8876655 4566899 567899999998 999999999999999999999999999
Q ss_pred HhCChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHH
Q 044788 114 AFGPFWGSLMGSWKFLSGVINLASYPILCIDYLKLVFPIFASGFSHYLAIFVVTLVLSFLNYTGLAIVGYTAVTLGVVSL 193 (483)
Q Consensus 114 ~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i 193 (483)
.+||..||++||.+++.+....+......+.+...+ +..+ ..+.+.+++++.++++.+|++|+|..++++.++.++++
T Consensus 101 ~~G~~~gf~~GW~~~l~~~~~~~~~~~a~~~~~~~~-~~~~-~~~~~~~~~~~~~l~~~iN~~gvk~~~~i~~~~~~iki 178 (499)
T PRK15049 101 FLGEKAAYVAGWMYFINWAMTGIVDITAVALYMHYW-GAFG-GVPQWVFALAALTIVGTMNMIGVKWFAEMEFWFALIKV 178 (499)
T ss_pred HhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998876666666666666543 2111 23556667778888999999999999999999998887
Q ss_pred HHHHHHHHHHhc---ccccc-----cccccCCCC--CCCchHHHH---HHHHHHhcchHhhhhhhhhccCcCcchHHHHH
Q 044788 194 IPFLFLTVIAIP---KIDSI-----RWISLGQNG--VPKNWRLFF---NTLFWNLNFWDNASTLAGEVEQPQRTFPKALF 260 (483)
Q Consensus 194 ~~~~~~~i~~~~---~~~~~-----~~~~~~~~~--~~~~~~~~~---~~~~~a~~G~e~~~~~~~E~k~p~r~~p~a~~ 260 (483)
+.++++++.++. ..++. .+.....++ .+.++.+++ ...+|+|.|+|.+++++||+|||+|++||++.
T Consensus 179 ~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~knP~r~iPrAi~ 258 (499)
T PRK15049 179 LAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGECKDPQTMVPKAIN 258 (499)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcChhhHHHHHHH
Confidence 776665554432 11111 111111111 123444443 35789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCccccHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCC
Q 044788 261 SAGLLTCVAYLLPLLAATGAIPLDQQNWVDGYFAEVAEIIAGKWLKICIEIGACLSIIGLYEAQLSNCAYQILGMTNLGL 340 (483)
Q Consensus 261 ~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~ 340 (483)
.++..++++|++........+|+++....++|+.++++..+.++...++.++.+++.+++.++.+++.+|++++|||||.
T Consensus 259 ~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~~~~~g~~~~~~ii~~~ilia~~ss~ns~~~~~sR~l~a~Ardg~ 338 (499)
T PRK15049 259 SVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFSKLGVPYIGSIMNIVVLTAALSSLNSGLYCTGRILRSMAMGGS 338 (499)
T ss_pred HHHHHHHHHHHHHHHHHheecchhccCcCCCHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999888777889999999899898999999999999999999999999999999999999
Q ss_pred CchhhhccCCCCCCCHHHHHHHHHHHHHHHh-------cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---CCCCc
Q 044788 341 LPKVFGSRSSWFHTPWVGIFISTLIALTVSY-------MDFTNIISCVNFLYSLGMLLEFASFLWLRKKLPA---TKRPF 410 (483)
Q Consensus 341 lP~~~~~~~~~~~~P~~ai~~~~i~~~~~~~-------~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~ 410 (483)
+|++|+|+|| +++|+++++++.+++++..+ ..++.+.++.+....+.|.+.+++.+++||+.++ .+|||
T Consensus 339 lP~~f~kv~k-~~~P~~Ail~~~~i~~l~~~l~~~~~~~~f~~l~~~~~~~~li~y~~~~~~~l~~R~~~~~~~~~~~pf 417 (499)
T PRK15049 339 APSFMAKMSR-QHVPYAGILATLVVYVVGVFLNYLVPSRVFEIVLNFASLGIIASWAFIIVCQMRLRKAIKEGKAADVSF 417 (499)
T ss_pred cCHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCC
Confidence 9999999996 89999999998887655321 1288899999999999999999999999876433 35789
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHH
Q 044788 411 RVPMEMLGLIFMCIIPSGFLVYVMV 435 (483)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (483)
|.|.+++.. +.+++..+++.....
T Consensus 418 ~~~~~p~~~-~~~l~~~~~~~~~~~ 441 (499)
T PRK15049 418 KLPGAPFTS-WLTLLFLLSVLVLMA 441 (499)
T ss_pred cccCccHHH-HHHHHHHHHHHHHHH
Confidence 999875443 334443444433333
No 4
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=100.00 E-value=5.1e-54 Score=433.65 Aligned_cols=417 Identities=20% Similarity=0.298 Sum_probs=343.0
Q ss_pred cccccccccchhHHHhhhhhhcc-cccCchhhHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCChHHHhHHHH
Q 044788 36 ITVTSKKLSLLPLIFLIYFEVAG-GPYGEEPAVGAAGPLFAILGFLIFPFIWSIPEALVTAELATTFPGNGGYVIWAHHA 114 (483)
Q Consensus 36 ~~~~~r~l~~~~~~~~~i~~~iG-g~~~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~l~~~el~~~~p~~Gg~y~~~~~~ 114 (483)
+.+++|+++.++++++++|.++| |+|..++.....|+ ..+++|+++++. .++.+++++|+++++|++||.|.|+++.
T Consensus 3 ~~~~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~g~-~~~~~~~i~~~~-~l~~al~~aEL~s~~P~aGG~y~~~~~~ 80 (445)
T PRK10644 3 SDADAHKVGLIPVTLMVAGNIMGSGVFLLPANLASTGG-IAIYGWLVTIIG-ALGLSMVYAKMSSLDPSPGGSYAYARRC 80 (445)
T ss_pred CCccCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHHHH-HHHHHHHHHHHH-HHHHHHHHHHHHhhCCCCCChhHHHHHH
Confidence 44678999999999999999999 88988887777666 578899999988 9999999999999999999999999999
Q ss_pred hCChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHH
Q 044788 115 FGPFWGSLMGSWKFLSGVINLASYPILCIDYLKLVFPIFASGFSHYLAIFVVTLVLSFLNYTGLAIVGYTAVTLGVVSLI 194 (483)
Q Consensus 115 ~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~ 194 (483)
+||..||++||.+++.+.............|...++|...+++...++.++++++++.+|++|+|..+++|.+.+.++++
T Consensus 81 ~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~gvk~~~~i~~i~~~~~~i 160 (445)
T PRK10644 81 FGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPLVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALI 160 (445)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Confidence 99999999999999988777666666667788777775544555566777788889999999999999999999999988
Q ss_pred HHHHHHHHHhccccccccccc-CCCCCCCch---HHHHHHHHHHhcchHhhhhhhhhccCcCcchHHHHHHHHHHHHHHH
Q 044788 195 PFLFLTVIAIPKIDSIRWISL-GQNGVPKNW---RLFFNTLFWNLNFWDNASTLAGEVEQPQRTFPKALFSAGLLTCVAY 270 (483)
Q Consensus 195 ~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~a~~G~e~~~~~~~E~k~p~r~~p~a~~~~~~~~~~~y 270 (483)
.++++.+.++...+.+++.+. +..+ ..++ ...+...+|+|.|+|.+++++||+|||+|++||+++.++.+++++|
T Consensus 161 ~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iPrai~~s~~i~~v~Y 239 (445)
T PRK10644 161 PIVGIAVFGWFWFRGETYMAAWNVSG-LGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCY 239 (445)
T ss_pred HHHHHHHHHHHHhCchhccCCccccc-cchHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCcccchhHHHHHHHHHHHHHH
Confidence 777776666544443333221 1111 1122 3345567899999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCCCCccccHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCCCchhhhccCC
Q 044788 271 LLPLLAATGAIPLDQQNWVDGYFAEVAEIIAGKWLKICIEIGACLSIIGLYEAQLSNCAYQILGMTNLGLLPKVFGSRSS 350 (483)
Q Consensus 271 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~~~~~~~ 350 (483)
++..++.....|+++...++.|+.++.++..+++...++.+..+++.+++.++.+...+|.+++|+|||.+|++|+|+||
T Consensus 240 ~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~g~~~~~~v~~~~~~s~~~~~~~~~~~~sr~~~a~ardg~lP~~~~~v~~ 319 (445)
T PRK10644 240 VLSSTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNK 319 (445)
T ss_pred HHHHHHHHhCCCHHHHhcCCChHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHhhCc
Confidence 99999999999988777677899999988888888888888888999999999999999999999999999999999997
Q ss_pred CCCCCHHHHHHHHHHHHHHHhc--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccCchhHHHHHH
Q 044788 351 WFHTPWVGIFISTLIALTVSYM--------DFTNIISCVNFLYSLGMLLEFASFLWLRKKLPATKRPFRVPMEMLGLIFM 422 (483)
Q Consensus 351 ~~~~P~~ai~~~~i~~~~~~~~--------~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 422 (483)
+++|+++++++.+++.++.+. .++.+.++.+...++.|.+++++.+++|||+++.+|| .++ +.
T Consensus 320 -~~tP~~Ai~~~~~i~~l~~l~~~~~~~~~~~~~l~~~~~~~~li~y~~~~~~~~~l~~~~~~~~~p----~~~----~~ 390 (445)
T PRK10644 320 -AGTPVAGLLIVGVLMTIFQLSSISPNASKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHFGKARP----AYL----AV 390 (445)
T ss_pred -CCCCHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccc----chh----HH
Confidence 799999999999988765532 3788899999999999999999999998887654443 222 23
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044788 423 CIIPSGFLVYVMVVATKMVCFVSALLTFFGIFLYFFIKLCRS 464 (483)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 464 (483)
..++++.+++..+..++.+...+.++.+++.++|+..+++|+
T Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ 432 (445)
T PRK10644 391 TLIAFVYCIWAVVGSGAKEVMWSFVTLMVITAFYALNYNRLH 432 (445)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344455555555667778888888888999988877655443
No 5
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=100.00 E-value=7.4e-54 Score=432.63 Aligned_cols=422 Identities=20% Similarity=0.252 Sum_probs=339.3
Q ss_pred cccccccccchhHHHhhhhhhccccc-CchhhHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCChHHHhHHHH
Q 044788 36 ITVTSKKLSLLPLIFLIYFEVAGGPY-GEEPAVGAAGPLFAILGFLIFPFIWSIPEALVTAELATTFPGNGGYVIWAHHA 114 (483)
Q Consensus 36 ~~~~~r~l~~~~~~~~~i~~~iGg~~-~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~l~~~el~~~~p~~Gg~y~~~~~~ 114 (483)
+++++|+++.++..+++++.++||.+ ..+..+..+||.+.++++++++++ .++.+++++|+++++|++||.|.|+++.
T Consensus 2 ~~~l~r~l~~~~~~~l~~~~~igg~~~~~~~~~~~~G~~~~~~~~~i~~~~-~~~~a~~~aEl~s~~P~~Gg~y~~~~~~ 80 (442)
T TIGR00908 2 HRQLKKTLATWQLWGIGVGYVISGDYAGWNFGLAQGGWGGFVVATLLVATM-YLTFCFSLAELSTMIPTAGGGYGFARRA 80 (442)
T ss_pred CchhhccCCHHHHHHhHHHHHhhccchhHhhHHHHhCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 45689999999999999999988654 445666778998888999888887 9999999999999999999999999999
Q ss_pred hCChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHH
Q 044788 115 FGPFWGSLMGSWKFLSGVINLASYPILCIDYLKLVFPIFASGFSHYLAIFVVTLVLSFLNYTGLAIVGYTAVTLGVVSLI 194 (483)
Q Consensus 115 ~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~ 194 (483)
+||..||.+||.+++.+....+..+..+++|+..++|.. +.+..++++.+++..+|++|+|..++++.++.+++++
T Consensus 81 ~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~~----~~~~~~~~~~~~~~~ln~~g~~~~~~i~~~~~~~~~~ 156 (442)
T TIGR00908 81 FGPWGGFLAGTAILIEFAFAPPAIACFIGAYCESLFPVG----PGWLAALVFYIVFIGINILGVGEAAKLEFVVTAVAII 156 (442)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC----chhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 999999999999999999999999999999999888753 3345666777788999999999999999999888877
Q ss_pred HHHHHHHHHhcccccccccccCC---CC-CCCchHHH---HHHHHHHhcchHhhhhhhhhccCcCcchHHHHHHHHHHHH
Q 044788 195 PFLFLTVIAIPKIDSIRWISLGQ---NG-VPKNWRLF---FNTLFWNLNFWDNASTLAGEVEQPQRTFPKALFSAGLLTC 267 (483)
Q Consensus 195 ~~~~~~i~~~~~~~~~~~~~~~~---~~-~~~~~~~~---~~~~~~a~~G~e~~~~~~~E~k~p~r~~p~a~~~~~~~~~ 267 (483)
.++++......+.+..++.+... .+ .+.++.++ +...+|+|.|+|.+++++||+|||+||+||+++.+..++.
T Consensus 157 ~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iprai~~s~~~~~ 236 (442)
T TIGR00908 157 ALGVFIGAMVPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKNPKRDIPRGLIGAILTLL 236 (442)
T ss_pred HHHHHHHHHhccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHH
Confidence 66555544444434333322111 11 12233333 3456899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCCCccccHHHHHHHHHcc--hHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCCCchhh
Q 044788 268 VAYLLPLLAATGAIPLDQQNWVDGYFAEVAEIIAG--KWLKICIEIGACLSIIGLYEAQLSNCAYQILGMTNLGLLPKVF 345 (483)
Q Consensus 268 ~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~~ 345 (483)
++|+.......+..+++++...++|+.+.+++..+ ++...++.+..+++.+++.++.+.+.+|++++|||||.+|++|
T Consensus 237 ~~~~~~~~~~~g~~~~~~l~~~~~p~~~~~~~~~g~~~~~~~~i~~~~~~~~~~s~~~~~~~~sR~l~a~ardg~lP~~~ 316 (442)
T TIGR00908 237 ALAAGILVVGPGAADAKELMGSNNPLPEALESIYGGSTWMSQFVNLVGLFGLIASFHGIIYGYSRQIFALSRAGYLPESL 316 (442)
T ss_pred HHHHHHHHHHhcCCCHHHhCCCcchHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHH
Confidence 99998887777777777776667899888887754 3556666777778888999999999999999999999999999
Q ss_pred hccCCCCCCCHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccCchhHHHHHHHH
Q 044788 346 GSRSSWFHTPWVGIFISTLIALTVSY-MDFTNIISCVNFLYSLGMLLEFASFLWLRKKLPATKRPFRVPMEMLGLIFMCI 424 (483)
Q Consensus 346 ~~~~~~~~~P~~ai~~~~i~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 424 (483)
+|+| |+++|++++++..+++++..+ .+.+.+.++.++...+.|.+.+++++++|+|+|+.+||||.|.+++... .++
T Consensus 317 ~~~~-~~~~P~~Ail~~~~i~~~~~l~~~~~~l~~~~~~~~~~~y~~~~~a~i~lr~~~p~~~rp~~~p~~~~~~~-l~~ 394 (442)
T TIGR00908 317 SKVN-RKKAPVLAIVVPGVIGFGLSLTGQTALIILVSVFGAIISYVLSMAAHFTLRIRRPDMERPYRTPGGILTPG-VAL 394 (442)
T ss_pred HHhC-CCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCCCcchHHH-HHH
Confidence 9999 699999999999988877664 4566778888889999999999999999999999999999998754443 344
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044788 425 IPSGFLVYVMVVATKMVCFVSALLTFFGIFLYFFIKLCRS 464 (483)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 464 (483)
+..+++++..+..++........+.+++.+.|..++|+|+
T Consensus 395 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 434 (442)
T TIGR00908 395 VLACVALVTGFYVDPRVVVGAVAIFVVLIGYYFLYSRHHL 434 (442)
T ss_pred HHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhhhchh
Confidence 4455555555555665555556666676777766654444
No 6
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=100.00 E-value=5.7e-54 Score=433.59 Aligned_cols=424 Identities=21% Similarity=0.283 Sum_probs=337.7
Q ss_pred cccccccccchhHHHhhhhhhcc-cccCchhhHh-h-hChHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCChHHHhHH
Q 044788 36 ITVTSKKLSLLPLIFLIYFEVAG-GPYGEEPAVG-A-AGPLFAILGFLIFPFIWSIPEALVTAELATTFPGNGGYVIWAH 112 (483)
Q Consensus 36 ~~~~~r~l~~~~~~~~~i~~~iG-g~~~~~~~~~-~-~G~~~~i~~~~~~~~~~~~~~~l~~~el~~~~p~~Gg~y~~~~ 112 (483)
+++++|++++++.+++++|.++| |++..++... . +++...+++|++++++ .++.+++++|+++++|++||.|.|++
T Consensus 3 ~~~L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~-~l~~al~~aEl~s~~P~~GG~y~y~~ 81 (445)
T PRK11357 3 SQELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLI-VIPQMCVYAELSTAYPENGADYVYLK 81 (445)
T ss_pred cccccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHH-HHHHHHHHHHHHhhcCCCCCceeeHH
Confidence 45789999999999999999999 7888877644 3 4455688899999998 99999999999999999999999999
Q ss_pred HHhCChhHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHH
Q 044788 113 HAFGPFWGSLMGSWKF-LSGVINLASYPILCIDYLKLVFPIFASGFSHYLAIFVVTLVLSFLNYTGLAIVGYTAVTLGVV 191 (483)
Q Consensus 113 ~~~g~~~g~~~g~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~ 191 (483)
+.+||..||..+|..+ .......+..+...++|+...+|.. +.....+++++...+..+|++|+|..+++|.++++.
T Consensus 82 ~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~--~~~~~~~~~~~~~~~~~ln~~gv~~~~~v~~~~~~~ 159 (445)
T PRK11357 82 NAGSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLTPID--PLLGKFIAAGLIIAFMLLHLRSVEGGAAFQTLITIA 159 (445)
T ss_pred HhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--hHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 9999999999999755 4455667778888888887766531 223345566667778889999999999999999999
Q ss_pred HHHHHHHHHHHHhcccccccccccCCC--CCCCchHHH---HHHHHHHhcchHhhhhhhhhccCcCcchHHHHHHHHHHH
Q 044788 192 SLIPFLFLTVIAIPKIDSIRWISLGQN--GVPKNWRLF---FNTLFWNLNFWDNASTLAGEVEQPQRTFPKALFSAGLLT 266 (483)
Q Consensus 192 ~i~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~---~~~~~~a~~G~e~~~~~~~E~k~p~r~~p~a~~~~~~~~ 266 (483)
+++.++++++.++...+++++.+.... +....+.++ +...+|+|.|+|.+++++||+|||+||+||+++.++.++
T Consensus 160 ~~~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iP~Ai~~~~~i~ 239 (445)
T PRK11357 160 KIIPFTIVIGLGIFWFKAENFAAPTTTAIGATGSFMALLAGISATSWSYTGMASICYMTGEIKNPGKTMPRALIGSCLLV 239 (445)
T ss_pred HHHHHHHHHHHHHHHcCCccccCCCcccccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHhcCccccchHHHHHHHHHH
Confidence 998877766665543333333221111 111113333 445689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCCCccccHHHHHHHHH--cchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCCCchh
Q 044788 267 CVAYLLPLLAATGAIPLDQQNWVDGYFAEVAEII--AGKWLKICIEIGACLSIIGLYEAQLSNCAYQILGMTNLGLLPKV 344 (483)
Q Consensus 267 ~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~ 344 (483)
+++|++.........|.+++..++.|+.++.+.. .+++...++.++..++.+++.++.+.+.+|++++|+|||.+|++
T Consensus 240 ~~~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~a~ardg~lp~~ 319 (445)
T PRK11357 240 LVLYTLLALVISGLMPFDKLANSETPISDALTWIPALGSTAGIFVAITAMIVILGSLSSCVMYQPRLEYAMAKDNLFFKC 319 (445)
T ss_pred HHHHHHHHHHHHhcCCHHHHhcCCchHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCCchHH
Confidence 9999999999988888888877778888888764 46666677777788889999999999999999999999999999
Q ss_pred hhccCCCCCCCHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccCchhHHHHHHH
Q 044788 345 FGSRSSWFHTPWVGIFISTLIALTVS-YMDFTNIISCVNFLYSLGMLLEFASFLWLRKKLPATKRPFRVPMEMLGLIFMC 423 (483)
Q Consensus 345 ~~~~~~~~~~P~~ai~~~~i~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 423 (483)
|+|+|||+++|+++++++.++++++. ..+++.+.+..+....+.|.+...+++++|||+ +.+||||.|..+.... ++
T Consensus 320 ~~~v~~~~~tP~~a~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~i~lr~~~-~~~~~~k~p~~~~~~~-~~ 397 (445)
T PRK11357 320 FGHVHPKYNTPDVSIILQGALGIFFIFVSDLTSLLGYFTLVMCFKNTLTFGSIIWCRKRD-DYKPLWRTPAFGLMTT-LA 397 (445)
T ss_pred HHHhCCCCCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHheeecCC-CCCCCcccCCchHHHH-HH
Confidence 99999999999999999999988776 467888988888888899999988998887664 5678999998854433 33
Q ss_pred HHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044788 424 IIPSGFLVYVMV-VATKMVCFVSALLTFFGIFLYFFIKLCRS 464 (483)
Q Consensus 424 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 464 (483)
++..+++++... ..+.+....+..++++|+++|+.++++++
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~ 439 (445)
T PRK11357 398 IASSLILVASTFVWAPIPGLICAVIVIATGLPAYAFWAKRSR 439 (445)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhhhHHhheechhh
Confidence 344444443332 33445566788899999999987665544
No 7
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=3.2e-55 Score=421.87 Aligned_cols=425 Identities=25% Similarity=0.351 Sum_probs=362.3
Q ss_pred ccccccccccchhHHHhhhhhhcc-cccCchhhHhh-hChHHHHHH-HHHHHHHHHHHHHHHHHHhhccCCCCChHHHhH
Q 044788 35 TITVTSKKLSLLPLIFLIYFEVAG-GPYGEEPAVGA-AGPLFAILG-FLIFPFIWSIPEALVTAELATTFPGNGGYVIWA 111 (483)
Q Consensus 35 ~~~~~~r~l~~~~~~~~~i~~~iG-g~~~~~~~~~~-~G~~~~i~~-~~~~~~~~~~~~~l~~~el~~~~p~~Gg~y~~~ 111 (483)
++.+++|+++.++.+.+.+++++| |+|..|..+.. +|+.+..+. |+..+++ +++.++||+||++.+|++||+|.|.
T Consensus 6 ~~~~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~-s~~galcyaELGT~ipksGgd~ayi 84 (479)
T KOG1287|consen 6 EEVQLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGII-SIIGALCYAELGTSIPKSGGDYAYI 84 (479)
T ss_pred ccccccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHH-HHHHHHHHHHHhccccCCCcchhhH
Confidence 345688999999999999999999 89999998766 667655444 5555555 9999999999999999999999999
Q ss_pred HHHhCChhHHHHHHHHHHH-hhhhHHHHHHHHHHH-HHHhcccc-ccchHHHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Q 044788 112 HHAFGPFWGSLMGSWKFLS-GVINLASYPILCIDY-LKLVFPIF-ASGFSHYLAIFVVTLVLSFLNYTGLAIVGYTAVTL 188 (483)
Q Consensus 112 ~~~~g~~~g~~~g~~~~~~-~~~~~~~~~~~~~~~-l~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~ 188 (483)
.+++||.+||...|.-++. .....+..+..+++| ++..+|.. .+.+....++.++++.++++|+.++|+..++|.++
T Consensus 85 ~~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp~c~~p~~~~~lla~~~l~~lt~~n~~~V~~a~~vq~~f 164 (479)
T KOG1287|consen 85 SEAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFPLCDVPRVASKLLAAALLVLLTLINSFSVKWATRVQIVF 164 (479)
T ss_pred HHHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 9999999999999987765 455569999999999 77778732 23456678888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcc---cccccccccCCCC---CCCchHHHHHHHHHHhcchHhhhhhhhhccCcCcchHHHHHHH
Q 044788 189 GVVSLIPFLFLTVIAIPK---IDSIRWISLGQNG---VPKNWRLFFNTLFWNLNFWDNASTLAGEVEQPQRTFPKALFSA 262 (483)
Q Consensus 189 ~~~~i~~~~~~~i~~~~~---~~~~~~~~~~~~~---~~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~p~r~~p~a~~~~ 262 (483)
+..+++.+.++++.++.. .+.+++...+.++ ....+...++...|+|.|||...+.+||+|||+||+|||+..+
T Consensus 165 t~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~g~~~~~g~i~lafysglfa~~GWd~lN~vteEiknP~ktLP~Ai~is 244 (479)
T KOG1287|consen 165 TIAKLLALLLIIITGLYLLFWGSTQNFENSEFEGSDTDVGNIALAFYSGLFAFSGWDYLNYVTEEIKNPRRTLPRAILIS 244 (479)
T ss_pred HHHHHHHHHHHHHhchheeEecccccccccccccCcCchHHHHHHHHHhhhcccCchhhccchHhhcCccccchHHHHHh
Confidence 999999999988887753 3344433222332 2345677888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCccccHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCCCc
Q 044788 263 GLLTCVAYLLPLLAATGAIPLDQQNWVDGYFAEVAEIIAGKWLKICIEIGACLSIIGLYEAQLSNCAYQILGMTNLGLLP 342 (483)
Q Consensus 263 ~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP 342 (483)
+.++++.|++..++...++++|++.+++....+.++..+|.+. +++.+.+.++++++.++.+++.||.++++||+|++|
T Consensus 245 i~lvt~iYil~NvAy~~vls~~e~l~S~aVav~Fa~~~~G~~~-~~ip~~ValS~~G~~n~~ifs~SR~~~~~areG~LP 323 (479)
T KOG1287|consen 245 IPLVTVIYVLVNVAYFTVLSPDEILSSDAVAVTFADRILGVFA-WAIPFSVALSLIGSLNSVIFSSSRLFYAGAREGHLP 323 (479)
T ss_pred hHHHHHHHHHhHhheeEecCHHHhcccchHHHHHHHHhccchH-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHccCcc
Confidence 9999999999999999999999998888788888888888876 999999999999999999999999999999999999
Q ss_pred hhhhccCCCCCCCHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccCchhHHHHH
Q 044788 343 KVFGSRSSWFHTPWVGIFISTLIALTVSYM-DFTNIISCVNFLYSLGMLLEFASFLWLRKKLPATKRPFRVPMEMLGLIF 421 (483)
Q Consensus 343 ~~~~~~~~~~~~P~~ai~~~~i~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 421 (483)
+.|+..|+|+.+|..++++.+.++++..+. +++++++..++.+.+.+.+.+.+++++|+|+|+.+||+|.|...++..+
T Consensus 324 ~~~s~i~~~~~TP~~allf~~~~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~~~rPiKvpl~~p~~~~ 403 (479)
T KOG1287|consen 324 AFFSMISVRRFTPRPALLFSGLLSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPPLPRPIKVPLFIPILFL 403 (479)
T ss_pred HHHHhhcCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCEeeeeehHHHHH
Confidence 999999998889999999999999999876 5999999999999999999999999999999999999999988665443
Q ss_pred HHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044788 422 MCIIPSGFLVYVMVVAT-KMVCFVSALLTFFGIFLYFFIKLCRS 464 (483)
Q Consensus 422 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~ 464 (483)
.+ .+.++...+..+ +....++.++++.|+++|....++++
T Consensus 404 ~~---~i~lvvip~~~~~~~~~~ig~~i~l~G~~~Y~~~i~~~~ 444 (479)
T KOG1287|consen 404 LI---CIFLVVIPIISDFPVETLIGIGIILSGVPFYFLFIHWKK 444 (479)
T ss_pred HH---HHHHhheeeeecCCccchhHHHHHHHhhhhheEEEEecC
Confidence 33 344444444445 44588999999999999977654443
No 8
>PRK11387 S-methylmethionine transporter; Provisional
Probab=100.00 E-value=6.3e-53 Score=428.11 Aligned_cols=419 Identities=16% Similarity=0.193 Sum_probs=328.8
Q ss_pred ccccccccchhHHHhhhhhhcc-cccCchhhH-hhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCChHHHhHHHH
Q 044788 37 TVTSKKLSLLPLIFLIYFEVAG-GPYGEEPAV-GAAGPLFAILGFLIFPFIWSIPEALVTAELATTFPGNGGYVIWAHHA 114 (483)
Q Consensus 37 ~~~~r~l~~~~~~~~~i~~~iG-g~~~~~~~~-~~~G~~~~i~~~~~~~~~~~~~~~l~~~el~~~~p~~Gg~y~~~~~~ 114 (483)
+++||+++.+++.++++|.++| |+|..++.. ..+||.+.+++|++++++ .++.+++++|+++++|++||.|.|+++.
T Consensus 10 ~~l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~-~~~~~~~~aELas~~P~aGG~y~y~~~~ 88 (471)
T PRK11387 10 GQFKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALV-VYLVMQCLGELSVAMPETGAFHVYAARY 88 (471)
T ss_pred hhhhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCCCCHHHHHHHh
Confidence 4588999999999999999999 888776664 558886789999999998 9999999999999999999999999999
Q ss_pred hCChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHH
Q 044788 115 FGPFWGSLMGSWKFLSGVINLASYPILCIDYLKLVFPIFASGFSHYLAIFVVTLVLSFLNYTGLAIVGYTAVTLGVVSLI 194 (483)
Q Consensus 115 ~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~ 194 (483)
+||..||.+||.+++++....+......+.++..++|. .+.+...+++.++++.+|++|+|..++++...+.++++
T Consensus 89 ~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~p~----~~~~~~~~~~~~~~~~in~~gvk~~~~~~~~~~~~ki~ 164 (471)
T PRK11387 89 LGPATGYTVAWLYWLTWTVALGSSLTAAGFCMQYWFPQ----VPVWPWCLLFCALIFGLNVVSTRFFAEGEFWFSLIKVV 164 (471)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc----CcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888877777777676666553 23344445556778899999999999999998888887
Q ss_pred HHHHHHHHHhcc------cccc----cccccCCCC-CCCc---hHHHHHHHHHHhcchHhhhhhhhhccCcCcchHHHHH
Q 044788 195 PFLFLTVIAIPK------IDSI----RWISLGQNG-VPKN---WRLFFNTLFWNLNFWDNASTLAGEVEQPQRTFPKALF 260 (483)
Q Consensus 195 ~~~~~~i~~~~~------~~~~----~~~~~~~~~-~~~~---~~~~~~~~~~a~~G~e~~~~~~~E~k~p~r~~p~a~~ 260 (483)
.++++++.++.. .+.+ .+.....++ .+.+ +...+...+|+|.|+|.+++++||+|||+||+||+++
T Consensus 165 ~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r~iPrAi~ 244 (471)
T PRK11387 165 TILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGETENPAKVIPVAIR 244 (471)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHHHhcChhhHHHHHHH
Confidence 776655544321 1111 111111111 0112 2333445789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCccccHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCC
Q 044788 261 SAGLLTCVAYLLPLLAATGAIPLDQQNWVDGYFAEVAEIIAGKWLKICIEIGACLSIIGLYEAQLSNCAYQILGMTNLGL 340 (483)
Q Consensus 261 ~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~ 340 (483)
.++.+++++|++..+......|.++....++|+.+++++.++++...++.++.+++.+++.++.+++.+|++++|||||.
T Consensus 245 ~~~~~~~~~y~~~~~~~~~~~p~~~~~~~~~p~~~~~~~~g~~~~~~ii~~~~~~s~~~~~~~~~~~~sR~l~a~ardg~ 324 (471)
T PRK11387 245 TTIARLVIFFVGTVLVLAALIPMQQAGVEKSPFVLVFEKVGIPYAADIFNFVILTAILSAANSGLYASGRMLWSLSNEGT 324 (471)
T ss_pred HHHHHHHHHHHHHHHHHheecCccccCccCChHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCC
Confidence 99999999999999999999998877767789999999988899999999999999999999999999999999999999
Q ss_pred CchhhhccCCCCCCCHHHHHHHHHHHHHHHhc-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-----CC
Q 044788 341 LPKVFGSRSSWFHTPWVGIFISTLIALTVSYM-------DFTNIISCVNFLYSLGMLLEFASFLWLRKKLPAT-----KR 408 (483)
Q Consensus 341 lP~~~~~~~~~~~~P~~ai~~~~i~~~~~~~~-------~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-----~~ 408 (483)
+|++|+|+|| +++|++++++..+++++..+. .++.+.++.++..++.|++.+++.+++|+|+++. +|
T Consensus 325 lP~~f~~~~~-~~~P~~Ail~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~li~y~~~~~~~i~lr~~~~~~~~~~~~~ 403 (471)
T PRK11387 325 LPACFARLTK-RGIPLTALSVSMLGGLLALFSSVVAPDTVFVALSAISGFAVVAVWLSICASHFMFRRRHLRDGKALSEL 403 (471)
T ss_pred cCHHHHHhCC-CCCcHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 9999999997 799999999886655543321 1456778888899999999999999999887542 47
Q ss_pred CcccCchhHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHHHHH
Q 044788 409 PFRVPMEMLGLIFMCIIPSGFLVYVMVVAT--KMVCFVSALLTFFGIFLYFFIKLC 462 (483)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~ 462 (483)
|||.|.+++...+ +++...+++......+ ......+..+++++++.|..++|+
T Consensus 404 ~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (471)
T PRK11387 404 AYRAPWYPLTPIL-GFVLCLLACVGLAFDPSQRIALWCGIPFVALCYGAYYLTQRL 458 (471)
T ss_pred CccCCCccHHHHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 8999887544333 3333333333222222 223556777777888888776543
No 9
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=100.00 E-value=7.7e-53 Score=431.05 Aligned_cols=434 Identities=21% Similarity=0.293 Sum_probs=333.1
Q ss_pred hhcccccccccccchhHHHhhhhhhcc-cccCchhhHh-hhChHH-HHHHHHHHHHHHHHHHHHHHHHhhccCCCCChHH
Q 044788 32 QQSTITVTSKKLSLLPLIFLIYFEVAG-GPYGEEPAVG-AAGPLF-AILGFLIFPFIWSIPEALVTAELATTFPGNGGYV 108 (483)
Q Consensus 32 ~~~~~~~~~r~l~~~~~~~~~i~~~iG-g~~~~~~~~~-~~G~~~-~i~~~~~~~~~~~~~~~l~~~el~~~~p~~Gg~y 108 (483)
+..++++++|+++.++.++++++.++| |++..+.... .+|+.+ .+++|++++++ .++.+++++|+++++|++||.|
T Consensus 33 ~~~~~~~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i~-~~~~al~~aELas~~P~sGG~y 111 (501)
T TIGR00911 33 DGGEAVALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIF-SIVGALVYAELGTTIPKSGGEY 111 (501)
T ss_pred ccccccccCccccHhHhhHhheeceEEeeEeecHHHHHhhCCChHHHHHHHHHHHHH-HHHHHHHHHHHHhhcCCCCchh
Confidence 334567799999999999999999999 8888877644 467644 46788888887 9999999999999999999999
Q ss_pred HhHHHHhCChhHHHHHHHHHHH-hhhhHHHHHHHHHHHHHH-hccccc-cchHHHHHHHHHHHHHHHHHhhchhHHHHHH
Q 044788 109 IWAHHAFGPFWGSLMGSWKFLS-GVINLASYPILCIDYLKL-VFPIFA-SGFSHYLAIFVVTLVLSFLNYTGLAIVGYTA 185 (483)
Q Consensus 109 ~~~~~~~g~~~g~~~g~~~~~~-~~~~~~~~~~~~~~~l~~-~~~~~~-~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~ 185 (483)
+|+++.+||..||+.+|..++. +....+..+...++|+.. .++... +++....++++++++.+.+|++|+|..++++
T Consensus 112 ~~~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~i~~~~i~~~~~ln~~Gvk~~~~~~ 191 (501)
T TIGR00911 112 NYILEVFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPDCEVPEWAIRLVAVLCVLLLTLVNCLSVKWATRVQ 191 (501)
T ss_pred hhHHhHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 9999999999999999987763 344566666777777643 444332 2344567777788889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccc---ccccccc-CCCCC---CCchHHHHHHHHHHhcchHhhhhhhhhccCcCcchHHH
Q 044788 186 VTLGVVSLIPFLFLTVIAIPKID---SIRWISL-GQNGV---PKNWRLFFNTLFWNLNFWDNASTLAGEVEQPQRTFPKA 258 (483)
Q Consensus 186 ~~~~~~~i~~~~~~~i~~~~~~~---~~~~~~~-~~~~~---~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~p~r~~p~a 258 (483)
.+++.++++.++++++.++.... .++..+. ..++. ..++...+...+|+|.|+|.+++++||+|||+|++||+
T Consensus 192 ~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~knP~r~iPrA 271 (501)
T TIGR00911 192 DIFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGTETSAGGIVLAFYSGIWAYGGWNYLNFVTEEVKNPYRTLPIA 271 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccccCCCCCcHHHHHHHHHHHHHHHHhHHHHhhhHHHhcCchhhhHHH
Confidence 99999999887776665543221 1111111 11111 12334445667899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCCccccHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhc
Q 044788 259 LFSAGLLTCVAYLLPLLAATGAIPLDQQNWVDGYFAEVAEIIAGKWLKICIEIGACLSIIGLYEAQLSNCAYQILGMTNL 338 (483)
Q Consensus 259 ~~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d 338 (483)
++.+..+++++|++..++.....|++++..++.+.....+...+ ....++.++..++.+++.++.+.+.+|++++||||
T Consensus 272 i~~s~~~v~~~Y~l~~~a~~~~~~~~~l~~~~~~~~~~~~~~~g-~~~~~i~~~~~is~~~~~~~~~~~~sR~l~a~ard 350 (501)
T TIGR00911 272 IIISMPIVTFIYVLTNIAYFTVLSPEELLASLAVAVDFGERLLG-VMSWAMPALVGLSCFGSVNGSLFSSSRLFFVGGRE 350 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHhcChHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999988888887766544344444444444 45667778888899999999999999999999999
Q ss_pred CCCchhhhccCCCCCCCHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccCchhH
Q 044788 339 GLLPKVFGSRSSWFHTPWVGIFISTLIALTVS-YMDFTNIISCVNFLYSLGMLLEFASFLWLRKKLPATKRPFRVPMEML 417 (483)
Q Consensus 339 g~lP~~~~~~~~~~~~P~~ai~~~~i~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~ 417 (483)
|.+|++|+|+|+|+++|++++++..+++++.. ..++..+.+..++...+.|.+..++++++|+|+|+.+||||.|...+
T Consensus 351 g~lP~~~~~v~~~~~~P~~all~~~~i~~l~~~~~~~~~l~~~~~~~~~i~y~l~~~a~i~lR~~~p~~~rp~r~p~~~~ 430 (501)
T TIGR00911 351 GHLPSLLSMIHVKRLTPLPSLLIVCTLTLLMLFSGDIYSLINLISFANWLFNALAVAGLLWLRYKRPEMNRPIKVPLFFP 430 (501)
T ss_pred CCccHHHHHhcCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHheeccCCCCCCCccCchHHH
Confidence 99999999999989999999999988887655 34577777888888899999999999999999999999999986422
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH-HHHhccccccc
Q 044788 418 GLIFMCIIPSGFLVYVMVVATKMVCFVSALLTFFGIFLYFFI-KLCRSNKWLEF 470 (483)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~ 470 (483)
...++..++.+......++.......++.++|.++|... ++++++++.+.
T Consensus 431 ---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~~~~~~~ 481 (501)
T TIGR00911 431 ---VFFLLSCLFLIILSLYSPPVGCGVGFIIMLTGVPVYFFGVWWQNKPKWFRY 481 (501)
T ss_pred ---HHHHHHHHHHhhhhhccCchhhHHHHHHHHHHHHHHHHHHHHHhccHhhcc
Confidence 223333334444444445555566777888888888742 23333444443
No 10
>TIGR00909 2A0306 amino acid transporter.
Probab=100.00 E-value=3.2e-52 Score=419.82 Aligned_cols=413 Identities=21% Similarity=0.291 Sum_probs=351.0
Q ss_pred ccccccchhHHHhhhhhhcc-cccCchhhHhh-hChHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCChHHHhHHHHhC
Q 044788 39 TSKKLSLLPLIFLIYFEVAG-GPYGEEPAVGA-AGPLFAILGFLIFPFIWSIPEALVTAELATTFPGNGGYVIWAHHAFG 116 (483)
Q Consensus 39 ~~r~l~~~~~~~~~i~~~iG-g~~~~~~~~~~-~G~~~~i~~~~~~~~~~~~~~~l~~~el~~~~p~~Gg~y~~~~~~~g 116 (483)
++|+++.++.+++.++.++| |++..+..... +|+ ..+++|+++++. .++.+++++|+++++|++||.|+|+++.+|
T Consensus 1 l~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~-~~~l~~li~~~~-~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G 78 (429)
T TIGR00909 1 LSRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGP-AVILSFVLAGLT-ALFIALVYAELAAMLPVAGSPYTYAYEAMG 78 (429)
T ss_pred CCccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCC-HHHHHHHHHHHH-HHHHHHHHHHHHhhcCCCCcceeeHHHHhC
Confidence 47899999999999999999 77877766544 677 567889999887 889999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhccccccchHH------------HHHHHHHHHHHHHHHhhchhHHHHH
Q 044788 117 PFWGSLMGSWKFLSGVINLASYPILCIDYLKLVFPIFASGFSH------------YLAIFVVTLVLSFLNYTGLAIVGYT 184 (483)
Q Consensus 117 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~------------~~~~~~~~~~~~~i~~~g~~~~~~~ 184 (483)
|..|++.+|.+++.+....+..+...++++..+++..+.+.+. ....+++.++++.+|++|+|..+++
T Consensus 79 ~~~g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~~~ 158 (429)
T TIGR00909 79 ELTAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLDLPAVLTAKPGNGGVFNLPALLIVLFLTYILYLGAKESGKV 158 (429)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhhhcCCcccccccHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 9999999999999999999999999999998877632111111 1345677888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccccCCCCCCCchHHHHHHHHHHhcchHhhhhhhhhccCcCcchHHHHHHHHH
Q 044788 185 AVTLGVVSLIPFLFLTVIAIPKIDSIRWISLGQNGVPKNWRLFFNTLFWNLNFWDNASTLAGEVEQPQRTFPKALFSAGL 264 (483)
Q Consensus 185 ~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~p~r~~p~a~~~~~~ 264 (483)
+.+...++++.++++++.++.+.+.+++.+..+.+ ..++...+...+|+|.|+|.+++++||+|||+|++||+++.+..
T Consensus 159 ~~v~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~r~ip~ai~~~~~ 237 (429)
T TIGR00909 159 NDILVVLKVAALLLFAALGAIHFASNNYTPFMPMG-FGGVGAATALVFFAFIGFEAISTAAEEVKNPERDIPKAIILSLI 237 (429)
T ss_pred HHHHHHHHHHHHHHhhhHHHhhCcHHhcCCCCCCc-HHHHHHHHHHHHHHHhhHHHHHhhHHhccCccccccHHHHHHHH
Confidence 99999999988877777666666655555432221 22334445567899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCccccHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCCCchh
Q 044788 265 LTCVAYLLPLLAATGAIPLDQQNWVDGYFAEVAEIIAGKWLKICIEIGACLSIIGLYEAQLSNCAYQILGMTNLGLLPKV 344 (483)
Q Consensus 265 ~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~ 344 (483)
+++++|++.........|.++..+++.|+..+.++.++++...++.+..+++.+++.++.+.+.+|++++++|||.+|++
T Consensus 238 ~~~v~Yil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~~ 317 (429)
T TIGR00909 238 VVTLLYVLVAAVILGAVPWRQLAGSTAPLSLVGYDLGQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSRDGLLPGS 317 (429)
T ss_pred HHHHHHHHHHHHHhcCcCHHHhCCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHH
Confidence 99999999999998888888887778899999888889999999999999999999999999999999999999999999
Q ss_pred hhccCCCCCCCHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccCchhHHHHHHH
Q 044788 345 FGSRSSWFHTPWVGIFISTLIALTVS-YMDFTNIISCVNFLYSLGMLLEFASFLWLRKKLPATKRPFRVPMEMLGLIFMC 423 (483)
Q Consensus 345 ~~~~~~~~~~P~~ai~~~~i~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 423 (483)
|+|+|+|+++|++++++..+++++.. ..+++.+.++.+....+.|.+.+++.+++|||+|+.+||||.|..++..
T Consensus 318 ~~~~~~~~~~P~~a~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~a~~~lr~~~~~~~~~~~~~~~~~~~---- 393 (429)
T TIGR00909 318 LSKVHPKTGTPHMSIIIFSLTAALLASLVPLEGLAELTSIGTLIAFAAVNVAVIILRRRRPDIQRAFRCPLVPVLP---- 393 (429)
T ss_pred HHHcCCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcchHHH----
Confidence 99999989999999999998888766 4568999999999999999999999999999999999999998875433
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 044788 424 IIPSGFLVYVMVVATKMVCFVSALLTFFGIFLYFF 458 (483)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 458 (483)
.+....+.+.....++.+.....++.++|.++|..
T Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~ 428 (429)
T TIGR00909 394 VLVVSYCIYLLLNLGPGTTVWFLVWMLLGSVFYFI 428 (429)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHc
Confidence 22233444444556888999999999999998864
No 11
>PRK10746 putative transport protein YifK; Provisional
Probab=100.00 E-value=1.2e-51 Score=416.22 Aligned_cols=424 Identities=17% Similarity=0.208 Sum_probs=340.5
Q ss_pred cccccccccchhHHHhhhhhhcc-cccCchh-hHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCChHHHhHHH
Q 044788 36 ITVTSKKLSLLPLIFLIYFEVAG-GPYGEEP-AVGAAGPLFAILGFLIFPFIWSIPEALVTAELATTFPGNGGYVIWAHH 113 (483)
Q Consensus 36 ~~~~~r~l~~~~~~~~~i~~~iG-g~~~~~~-~~~~~G~~~~i~~~~~~~~~~~~~~~l~~~el~~~~p~~Gg~y~~~~~ 113 (483)
++++||+++.+|+..+++|+++| |+|..++ .+..+|| +.+++|++++++ .++++++++|+++++|++||.|+|++|
T Consensus 5 ~~~l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp-~~~l~~~i~g~~-~~~v~~~~aEl~~~~P~sGg~~~y~~~ 82 (461)
T PRK10746 5 KPELQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGP-SVLLAYIIAGLF-VFFIMRSMGEMLFLEPVTGSFAVYAHR 82 (461)
T ss_pred chHHhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcCh-HHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 44688999999999999999999 7775544 4566999 788999999998 999999999999999999999999999
Q ss_pred HhCChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHH
Q 044788 114 AFGPFWGSLMGSWKFLSGVINLASYPILCIDYLKLVFPIFASGFSHYLAIFVVTLVLSFLNYTGLAIVGYTAVTLGVVSL 193 (483)
Q Consensus 114 ~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i 193 (483)
.+||.+||.+||.+++.+....+......+.|++.++|. .+.+....++++.++.+|++|+|..++++.+.+.+++
T Consensus 83 ~~g~~~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~~p~----~~~~~~~~~~~~~~~~lN~~gv~~~~~~e~~~~~~ki 158 (461)
T PRK10746 83 YMSPFFGYLTAWSYWFMWMAVGISEITAIGVYVQFWFPE----MAQWIPALIAVALVALANLAAVRLYGEIEFWFAMIKV 158 (461)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC----CchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 999999999999999999888888888888999888774 3345556667778888999999999999999998887
Q ss_pred HHHHHHHHHHhc----c-ccc---ccccccCCCC--CCCchHH---HHHHHHHHhcchHhhhhhhhhccCcCcchHHHHH
Q 044788 194 IPFLFLTVIAIP----K-IDS---IRWISLGQNG--VPKNWRL---FFNTLFWNLNFWDNASTLAGEVEQPQRTFPKALF 260 (483)
Q Consensus 194 ~~~~~~~i~~~~----~-~~~---~~~~~~~~~~--~~~~~~~---~~~~~~~a~~G~e~~~~~~~E~k~p~r~~p~a~~ 260 (483)
+.++++++.++. . .+. .++.+...++ .+.++.+ .+...+|+|.|+|.+++.+||+|||+|++||++.
T Consensus 159 ~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~knP~k~iP~Ai~ 238 (461)
T PRK10746 159 TTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEAKNPQVTLRSAVG 238 (461)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHhcChhhHHHHHHH
Confidence 776655543321 1 111 1122111111 1234443 4455789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCccccHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCC
Q 044788 261 SAGLLTCVAYLLPLLAATGAIPLDQQNWVDGYFAEVAEIIAGKWLKICIEIGACLSIIGLYEAQLSNCAYQILGMTNLGL 340 (483)
Q Consensus 261 ~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~ 340 (483)
.+...+.++|++..+......|+++...+++|+.+..++.+.+....++.++.+++.+++.++.+++.+|++++|||||.
T Consensus 239 ~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~~~g~~~~~~i~~~~il~a~~s~~n~~~~~~sR~l~~~a~~g~ 318 (461)
T PRK10746 239 KVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKIGITAAAGIINFVVLTAALSGCNSGMYSCGRMLYALAKNRQ 318 (461)
T ss_pred HHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999988877889999998888888888889999999999999999999999999999999
Q ss_pred CchhhhccCCCCCCCHHHHHHHHHHHHHHH---h--c----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--CCC
Q 044788 341 LPKVFGSRSSWFHTPWVGIFISTLIALTVS---Y--M----DFTNIISCVNFLYSLGMLLEFASFLWLRKKLPAT--KRP 409 (483)
Q Consensus 341 lP~~~~~~~~~~~~P~~ai~~~~i~~~~~~---~--~----~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~--~~~ 409 (483)
+|++|+|+|| +++|++++++..+..++.. + . .++.+.++.+...++.|++.+++.+++||++|+. ++|
T Consensus 319 lP~~~~~~~~-~g~P~~al~~~~~~~~l~~~~~~~~~~~~~~f~~l~~~~~~~~~i~w~~i~~~~i~~r~~~~~~~~~~~ 397 (461)
T PRK10746 319 LPAAMAKVSR-HGVPVAGVAVSILILLVGSCLNYIIPNPQRVFVYVYSASVLPGMVPWFVILISQLRFRRAHKAAIASHP 397 (461)
T ss_pred cCHHHHHhCC-CCCcHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCC
Confidence 9999999996 8999999998755433221 1 1 2678889999999999999999999999998753 569
Q ss_pred cccCchhHHHHHHHHHHHHHHHHHHHh-h-hhHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 044788 410 FRVPMEMLGLIFMCIIPSGFLVYVMVV-A-TKMVCFVSALLTFFGIFLYFFIKLCRSNKW 467 (483)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 467 (483)
||.|+++....+. ++..+.++..... + +......+..+++++.+.|..+++.+|+|-
T Consensus 398 ~~~~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~ 456 (461)
T PRK10746 398 FRSILFPWANYLT-MAFLICVLIGMYFNEDTRMSLFVGIIFLLAVTLIYKVFGLNRHGKA 456 (461)
T ss_pred CcCCCccHHHHHH-HHHHHHHHHHHHHCccHHHHHHHHHHHHHHHHHHHHHHHhhhhcch
Confidence 9998886655443 3333333222222 2 235667778888888888888877666553
No 12
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=100.00 E-value=7.6e-52 Score=420.43 Aligned_cols=417 Identities=23% Similarity=0.334 Sum_probs=340.6
Q ss_pred ccccccchhHHHhhhhhhcc-cccCchhhHhh-hChHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-CChHHHhHHHHh
Q 044788 39 TSKKLSLLPLIFLIYFEVAG-GPYGEEPAVGA-AGPLFAILGFLIFPFIWSIPEALVTAELATTFPG-NGGYVIWAHHAF 115 (483)
Q Consensus 39 ~~r~l~~~~~~~~~i~~~iG-g~~~~~~~~~~-~G~~~~i~~~~~~~~~~~~~~~l~~~el~~~~p~-~Gg~y~~~~~~~ 115 (483)
++|++++++..++++++++| |++..|..... +||...+++|++++++ .++.+++|+|+++++|+ +||.|+|+++.+
T Consensus 5 ~~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~-~~~~al~~aEl~s~~P~~sGG~y~y~~~~~ 83 (473)
T TIGR00905 5 KSKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVG-MLALAFVFAILATKKPELDGGIYAYAREGF 83 (473)
T ss_pred cCCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHH-HHHHHHHHHHHHhhCCCCCCChhhhHHhHc
Confidence 47899999999999999999 88888887665 7776778999999998 99999999999999999 999999999999
Q ss_pred CChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhccccc--cchHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHH
Q 044788 116 GPFWGSLMGSWKFLSGVINLASYPILCIDYLKLVFPIFA--SGFSHYLAIFVVTLVLSFLNYTGLAIVGYTAVTLGVVSL 193 (483)
Q Consensus 116 g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i 193 (483)
||..||.+||.+++.+.......+....+++..++|..+ ++++..+.++++.++.+.+|++|+|..+++|.+.+..++
T Consensus 84 G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~ln~~Gi~~~~~i~~~~~~~~l 163 (473)
T TIGR00905 84 GPYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFGSGNPVPSILGASVLLWVFTFLVLRGVRQAAFINTITTIAKL 163 (473)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 999999999999998888777777777788888877432 345666777788888999999999999999999999999
Q ss_pred HHHHHHHHHHhcccccccccc-cCCC---CCCCchHH---HHHHHHHHhcchHhhhhhhhhccCcCcchHHHHHHHHHHH
Q 044788 194 IPFLFLTVIAIPKIDSIRWIS-LGQN---GVPKNWRL---FFNTLFWNLNFWDNASTLAGEVEQPQRTFPKALFSAGLLT 266 (483)
Q Consensus 194 ~~~~~~~i~~~~~~~~~~~~~-~~~~---~~~~~~~~---~~~~~~~a~~G~e~~~~~~~E~k~p~r~~p~a~~~~~~~~ 266 (483)
+.++++++.++...+.+++.. .... +....+.+ .+...+|+|.|+|..++++||+|| +||+||+++.+..++
T Consensus 164 ~~l~~~ii~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~-~r~iPrai~~~~~i~ 242 (473)
T TIGR00905 164 IPLFLFIIIGWFWFKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKN-KSDVGKATVLGTLGA 242 (473)
T ss_pred HHHHHHHHHHHHHhCchhcccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc-cccchHHHHHHHHHH
Confidence 887777766654333333211 1111 10112333 344578999999999999999999 999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCCCccccH-HHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCCCchhh
Q 044788 267 CVAYLLPLLAATGAIPLDQQNWVDGY-FAEVAEIIAGKWLKICIEIGACLSIIGLYEAQLSNCAYQILGMTNLGLLPKVF 345 (483)
Q Consensus 267 ~~~y~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~~ 345 (483)
+++|++.........|++++.+.+.| ..++.+...+++...++.++.+++.+++.++.+.+.+|++++|||||.+|++|
T Consensus 243 ~~~Yil~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~g~~~~~~i~i~~~is~~~~~~~~~~~~sR~~~amardg~lP~~~ 322 (473)
T TIGR00905 243 LVIYILITLLSLGVLPQQELANLPNPSMAAVLEMIVGKWGAVLISLGLIISVLGSLLSWTMLAAEVPFSAAKDGLFPKIF 322 (473)
T ss_pred HHHHHHHHHHHHhCcCHHHHhhCCCchHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHH
Confidence 99999999998888888887777788 78888888888888889999999999999999999999999999999999999
Q ss_pred hccCCCCCCCHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccCchhHHH
Q 044788 346 GSRSSWFHTPWVGIFISTLIALTVSY------MDFTNIISCVNFLYSLGMLLEFASFLWLRKKLPATKRPFRVPMEMLGL 419 (483)
Q Consensus 346 ~~~~~~~~~P~~ai~~~~i~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 419 (483)
+|+|| +++|++++++..+++.++.. .+++.+.++.++...+.|.+++++.+++|+|++. ++ .+.|..+
T Consensus 323 ~~v~~-~~tP~~Ai~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~a~~~lr~~~~~-~~-~~~~~~~--- 396 (473)
T TIGR00905 323 GRVNK-NGAPSVALLLTNILIQLFLLLTLLTSSAYNVLVSLAVVMILVPYLLSAAYLLKLAKVGTY-PK-IKNRKAL--- 396 (473)
T ss_pred HhhCc-cCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-cc-cccchHH---
Confidence 99998 59999999999888765442 2488899999999999999999999999887621 11 1222221
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044788 420 IFMCIIPSGFLVYVMVVATKMVCFVSALLTFFGIFLYFFIKLCRS 464 (483)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 464 (483)
++.+++.+.+.+..+..++.....+.+++++|+++|..++|+++
T Consensus 397 -~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~ 440 (473)
T TIGR00905 397 -IVGVIACVYSIWLLYAAGLKYLLLGFILYAPGIIFYGRARKERG 440 (473)
T ss_pred -HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 23344445555555666777888899999999999988766554
No 13
>PRK10249 phenylalanine transporter; Provisional
Probab=100.00 E-value=2.5e-51 Score=414.29 Aligned_cols=377 Identities=15% Similarity=0.201 Sum_probs=313.7
Q ss_pred cccccccccchhHHHhhhhhhcc-cccCchhh-HhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCChHHHhHHH
Q 044788 36 ITVTSKKLSLLPLIFLIYFEVAG-GPYGEEPA-VGAAGPLFAILGFLIFPFIWSIPEALVTAELATTFPGNGGYVIWAHH 113 (483)
Q Consensus 36 ~~~~~r~l~~~~~~~~~i~~~iG-g~~~~~~~-~~~~G~~~~i~~~~~~~~~~~~~~~l~~~el~~~~p~~Gg~y~~~~~ 113 (483)
+++++|+++.+|+..+++|.++| |+|..++. +..+|| ..+++|++++++ .++.+++++|+++++|++||.|.|+++
T Consensus 16 ~~~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp-~~~l~~li~~~~-~~~~~~~~aEl~~~~P~~Gg~~~y~~~ 93 (458)
T PRK10249 16 EPTLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGP-AVLLGYGVAGII-AFLIMRQLGEMVVEEPVSGSFAHFAYK 93 (458)
T ss_pred chhhhccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCc-HHHHHHHHHHHH-HHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence 34788999999999999999999 88766555 455899 688999999998 999999999999999999999999999
Q ss_pred HhCChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHH
Q 044788 114 AFGPFWGSLMGSWKFLSGVINLASYPILCIDYLKLVFPIFASGFSHYLAIFVVTLVLSFLNYTGLAIVGYTAVTLGVVSL 193 (483)
Q Consensus 114 ~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i 193 (483)
.+||.+||.+||.+++.+....+......+.|+..++|. .+.+....++.++.+.+|++|+|..++++.+.+.+++
T Consensus 94 ~~g~~~gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~~l~~~lN~~gv~~~~~i~~~~~~ikv 169 (458)
T PRK10249 94 YWGPFAGFLSGWNYWVMFVLVGMAELTAAGIYMQYWFPD----VPTWIWAAAFFIIINAVNLVNVRLYGETEFWFALIKV 169 (458)
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc----CcHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHH
Confidence 999999999999999999888888888888888877664 3445567777888899999999999999999988888
Q ss_pred HHHHHHHHHHhc---cccc---ccccc-cCCCC-CCCchHH---HHHHHHHHhcchHhhhhhhhhccCcCcchHHHHHHH
Q 044788 194 IPFLFLTVIAIP---KIDS---IRWIS-LGQNG-VPKNWRL---FFNTLFWNLNFWDNASTLAGEVEQPQRTFPKALFSA 262 (483)
Q Consensus 194 ~~~~~~~i~~~~---~~~~---~~~~~-~~~~~-~~~~~~~---~~~~~~~a~~G~e~~~~~~~E~k~p~r~~p~a~~~~ 262 (483)
+.++++++.++. ..++ .++.. ++..+ .+.+|.+ .+...+|+|.|+|.+++++||+|||+|++||+++.+
T Consensus 170 ~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~~~P~k~iPrai~~~ 249 (458)
T PRK10249 170 LAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEARDPEKSIPKAVNQV 249 (458)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCHhhHHHHHHHHH
Confidence 666555443321 1111 11111 11110 1234544 345578999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCccccHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCCCc
Q 044788 263 GLLTCVAYLLPLLAATGAIPLDQQNWVDGYFAEVAEIIAGKWLKICIEIGACLSIIGLYEAQLSNCAYQILGMTNLGLLP 342 (483)
Q Consensus 263 ~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP 342 (483)
...++++|++.........|+++....++|+.++.++.++++...++.++.+++.+++.++.+++.+|+++++||||.+|
T Consensus 250 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~sR~l~a~ardg~lP 329 (458)
T PRK10249 250 VYRILLFYIGSLVVLLALYPWVEVKSNSSPFVMIFHNLDSNVVASALNFVILVASLSVYNSGVYSNSRMLFGLSVQGNAP 329 (458)
T ss_pred HHHHHHHHHHHHHHHheeccccccCccCCcHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcC
Confidence 99999999998888888888887766678999999988888888888889999999999999999999999999999999
Q ss_pred hhhhccCCCCCCCHHHHHHHHHHHHHHHhc-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCCCCcccC
Q 044788 343 KVFGSRSSWFHTPWVGIFISTLIALTVSYM-------DFTNIISCVNFLYSLGMLLEFASFLWLRK--KLPATKRPFRVP 413 (483)
Q Consensus 343 ~~~~~~~~~~~~P~~ai~~~~i~~~~~~~~-------~~~~l~~~~~~~~~~~~~~~~~~~~~~r~--~~~~~~~~~~~~ 413 (483)
++|+|+|| +++|++++++..+++.+..+. .++.+.++.+....+.|.+.+++.+++|| ++++.++|||.|
T Consensus 330 ~~~~kv~~-~~~P~~All~~~~i~~l~~l~~~~~~~~~f~~l~~~~~~~~~i~y~~~~~~~l~~r~~~~~~~~~~p~~~~ 408 (458)
T PRK10249 330 KFLTRVSR-RGVPINSLMLSGAITSLVVLINYLLPQKAFGLLMALVVATLLLNWIMICLAHLRFRAAMRRQGRETQFKAL 408 (458)
T ss_pred HHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCC
Confidence 99999996 799999999998888765421 37888999999999999999999999987 345557899998
Q ss_pred chhHHH
Q 044788 414 MEMLGL 419 (483)
Q Consensus 414 ~~~~~~ 419 (483)
.+++..
T Consensus 409 ~~p~~~ 414 (458)
T PRK10249 409 LYPFGN 414 (458)
T ss_pred CccHHH
Confidence 875433
No 14
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=100.00 E-value=4.1e-51 Score=410.66 Aligned_cols=412 Identities=18% Similarity=0.237 Sum_probs=326.6
Q ss_pred cccccccchhHHHhhhhhhcc-cccCchhhHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCChHHHhHHHHhC
Q 044788 38 VTSKKLSLLPLIFLIYFEVAG-GPYGEEPAVGAAGPLFAILGFLIFPFIWSIPEALVTAELATTFPGNGGYVIWAHHAFG 116 (483)
Q Consensus 38 ~~~r~l~~~~~~~~~i~~~iG-g~~~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~l~~~el~~~~p~~Gg~y~~~~~~~g 116 (483)
+++|+++.++++++++|.++| |+|.+|+.++.+|| ..+++|+++++. +++.+++++|+++++|++||.|.|++| +|
T Consensus 2 ~~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a~~G~-~~i~~wli~~~~-~l~~al~~aEL~s~~P~~GG~y~y~~~-~g 78 (435)
T PRK10435 2 SSAKKIGLFACTGVVAGNMMGSGIALLPANLASIGS-IAIWGWIISIIG-AMSLAYVYARLATKNPQQGGPIAYAGE-IS 78 (435)
T ss_pred CCCCcCCHHHHHHHHHhhHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHH-HHHHHHHHHHHHhhCCCCCChhHHHHH-HC
Confidence 467899999999999999999 88999998888888 688999999998 999999999999999999999999999 89
Q ss_pred ChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHH
Q 044788 117 PFWGSLMGSWKFLSGVINLASYPILCIDYLKLVFPIFASGFSHYLAIFVVTLVLSFLNYTGLAIVGYTAVTLGVVSLIPF 196 (483)
Q Consensus 117 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~~ 196 (483)
|.+||.+||.++...+............|+..++|...++.+..+++++++++.+.+|++|+|..++++.+..+++++.+
T Consensus 79 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~~~~~~~~~~~~~i~~~~~~ln~~gvk~~~~i~~i~~~~~li~~ 158 (435)
T PRK10435 79 PAFGFQTGVLYYHANWIGNLAIGITAVSYLSTFFPVLNDPIPAGIACIAIVWVFTFVNMLGGTWVSRLTTIGLVLVLIPV 158 (435)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999987766666676777789888888655555666667777788899999999999999998888877766
Q ss_pred HHHHHHHhcccccccccc-cCCCC--CCCchHHHHHHHHHHhcchHhhhhhhhhccCcCcchHHHHHHHHHHHHHHHHHH
Q 044788 197 LFLTVIAIPKIDSIRWIS-LGQNG--VPKNWRLFFNTLFWNLNFWDNASTLAGEVEQPQRTFPKALFSAGLLTCVAYLLP 273 (483)
Q Consensus 197 ~~~~i~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~p~r~~p~a~~~~~~~~~~~y~l~ 273 (483)
+.+.+.++.+.+++++.+ +...+ ...++...+...+|+|.|+|.+++++||+|||+||+||+++.+..+++++|++.
T Consensus 159 ~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~r~iPrAi~~~~~iv~ilYil~ 238 (435)
T PRK10435 159 VGTAIVGWHWFDAATYAANWNTSDTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPKRTVPLATMLGTGLAGIIYIAA 238 (435)
T ss_pred HHHHHHHHHHcCHHhhcccccCCCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCccccccHHHHHHHHHHHHHHHHH
Confidence 665555554444433221 11111 012333344567999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCCCCCccccHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCCCchhhhccCCCCC
Q 044788 274 LLAATGAIPLDQQNWVDGYFAEVAEIIAGKWLKICIEIGACLSIIGLYEAQLSNCAYQILGMTNLGLLPKVFGSRSSWFH 353 (483)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~~~~~~~~~~ 353 (483)
........|+++.+..+.|+.+..++.++++...++.++.+++++++.++.++..+|..+++||||.+|++|+|+|| ++
T Consensus 239 ~~~~~~~~p~~~~~~~~~p~~~~~~~~~g~~~~~~i~~~~~i~~l~~~~~~~~~~~r~~~~~ardG~lP~~f~k~nk-~g 317 (435)
T PRK10435 239 TQVISGMFPASVMAASGAPFAISASTILGNWAAPLVSAFTAFACLTSLGSWMMLVGQAGVRAANDGNFPKVYGEVDK-NG 317 (435)
T ss_pred HHHHHhcCCHHHHhcCCCcHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHhhCc-CC
Confidence 99999999998887788899999998999999999888889999999999999999999999999999999999996 89
Q ss_pred CCHHHHHHHHHHHHHHH----h---------cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccCchhHHHH
Q 044788 354 TPWVGIFISTLIALTVS----Y---------MDFTNIISCVNFLYSLGMLLEFASFLWLRKKLPATKRPFRVPMEMLGLI 420 (483)
Q Consensus 354 ~P~~ai~~~~i~~~~~~----~---------~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 420 (483)
+|+++++++.++..++. + ..++.+.++.+...++.|++.+++.+++ |+++.+++ .. .
T Consensus 318 ~P~~Al~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~y~~~~~~~ir~--~~~~~~~~----~~----~ 387 (435)
T PRK10435 318 IPKKGLLLAAVKMTALMILITLMNSSGGKASDLFGELTGIAVLLTMLPYFYSCVDLIRF--EGVNIRNF----VS----L 387 (435)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCchhHH----HH----H
Confidence 99999999877664432 1 1378899999999999999999998754 33332222 11 2
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 044788 421 FMCIIPSGFLVYVMVVATKMVCFVSALLTFFGIFLYFFIKLCRSNK 466 (483)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 466 (483)
+.+.+..+++++......+. ....+++++.+.|..+.+||++|
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 430 (435)
T PRK10435 388 ICSVLGCVFCFIALMGASSF---ELAGTFIVSLIILMFYARKMHER 430 (435)
T ss_pred HHHHHHHHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHHhcch
Confidence 34455555555555433333 33444444455555554544444
No 15
>PRK10836 lysine transporter; Provisional
Probab=100.00 E-value=1.1e-50 Score=413.26 Aligned_cols=378 Identities=15% Similarity=0.161 Sum_probs=303.7
Q ss_pred cccccccccchhHHHhhhhhhcc-cccCchhh-HhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCChHHHhHHH
Q 044788 36 ITVTSKKLSLLPLIFLIYFEVAG-GPYGEEPA-VGAAGPLFAILGFLIFPFIWSIPEALVTAELATTFPGNGGYVIWAHH 113 (483)
Q Consensus 36 ~~~~~r~l~~~~~~~~~i~~~iG-g~~~~~~~-~~~~G~~~~i~~~~~~~~~~~~~~~l~~~el~~~~p~~Gg~y~~~~~ 113 (483)
+++++|+++.+++.++++|.++| |+|..++. ...+||...+++|++++++ .++.+++|+|+++++|++||.|.|+++
T Consensus 10 ~~~l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~-~~~~al~~aEL~s~~P~sGg~y~y~~~ 88 (489)
T PRK10836 10 APGLRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLM-VYFLMTSLGELAAYMPVSGSFATYGQN 88 (489)
T ss_pred cccccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCCCCHHHHHHH
Confidence 35688999999999999999999 88888765 4558996689999999998 999999999999999999999999999
Q ss_pred HhCChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHH
Q 044788 114 AFGPFWGSLMGSWKFLSGVINLASYPILCIDYLKLVFPIFASGFSHYLAIFVVTLVLSFLNYTGLAIVGYTAVTLGVVSL 193 (483)
Q Consensus 114 ~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i 193 (483)
.+||..||.+||.+++.+....+........++..++|. .+.+..+.+++.++..+|++|+|..+++|.+.+..++
T Consensus 89 ~~g~~~gf~~Gw~~~~~~~~~~a~~~~a~~~~~~~~~~~----~~~~~~~~~~~~~~~~lN~~gv~~~~~~~~~~~~~ki 164 (489)
T PRK10836 89 YVEEGFGFALGWNYWYNWAVTIAVDLVAAQLVMSWWFPD----TPGWIWSALFLGVIFLLNYISVRGFGEAEYWFSLIKV 164 (489)
T ss_pred HcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC----CchHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHH
Confidence 999999999999999987776665544455555555553 2233445566667789999999999999999998888
Q ss_pred HHHHHHHHHHhc------ccc----cccccccCCCCCCCchHHHH---HHHHHHhcchHhhhhhhhhccCcCcchHHHHH
Q 044788 194 IPFLFLTVIAIP------KID----SIRWISLGQNGVPKNWRLFF---NTLFWNLNFWDNASTLAGEVEQPQRTFPKALF 260 (483)
Q Consensus 194 ~~~~~~~i~~~~------~~~----~~~~~~~~~~~~~~~~~~~~---~~~~~a~~G~e~~~~~~~E~k~p~r~~p~a~~ 260 (483)
..++.+++.++. +.+ .+++.+.+ ...+.++.+.+ ...+|+|.|+|.+++++||+|||+||+||+++
T Consensus 165 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r~iPrAi~ 243 (489)
T PRK10836 165 TTVIVFIIVGVLMIIGIFKGAEPAGWSNWTIGD-APFAGGFAAMIGVAMIVGFSFQGTELIGIAAGESEDPAKNIPRAVR 243 (489)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCCccccCCCCC-CCCcccHHHHHHHHHHHHHHHccHHHHHHHHHHhcCHHHHHHHHHH
Confidence 776655443321 111 11221110 00122444433 23569999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCC--------ccccHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 044788 261 SAGLLTCVAYLLPLLAATGAIPLDQQN--------WVDGYFAEVAEIIAGKWLKICIEIGACLSIIGLYEAQLSNCAYQI 332 (483)
Q Consensus 261 ~~~~~~~~~y~l~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l 332 (483)
.++..+.++|++........+|.++.+ ...+|+..+++..+.+....++.++.+++.+++.++.+++.+|++
T Consensus 244 ~~~~~v~~~Yvl~~~~~~~~vp~~~~~~~~~~~~~~~~sp~~~~~~~~g~~~~~~ii~~~il~a~~~~~n~~~~~~sR~l 323 (489)
T PRK10836 244 QVFWRILLFYVFAILIISLIIPYTDPSLLRNDVKDISVSPFTLVFQHAGLLSAAAVMNAVILTAVLSAGNSGMYASTRML 323 (489)
T ss_pred HHHHHHHHHHHHHHHHHheecCCCChhhhccccccccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998888888765421 124688888888887888888899999999999999999999999
Q ss_pred HHhhhcCCCchhhhccCCCCCCCHHHHHHHHHHHHHHHhc-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---
Q 044788 333 LGMTNLGLLPKVFGSRSSWFHTPWVGIFISTLIALTVSYM-------DFTNIISCVNFLYSLGMLLEFASFLWLRKK--- 402 (483)
Q Consensus 333 ~~~a~dg~lP~~~~~~~~~~~~P~~ai~~~~i~~~~~~~~-------~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~--- 402 (483)
++|||||.+|++|+|+|| +++|++|+++..+++++..+. .++.+.++.++..++.|++.+++.+++||+
T Consensus 324 ~a~Ardg~lP~~~~kv~~-~~~P~~All~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~a~l~~R~~~~~ 402 (489)
T PRK10836 324 YTLACDGKAPRIFAKLSR-GGVPRNALYATTVIAGLCFLTSMFGNQTVYLWLLNTSGMTGFIAWLGIAISHYRFRRGYVL 402 (489)
T ss_pred HHHHcCCCcCHHHHhhCC-CCCcHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999997 799999999999988765532 256688888999999999999999999986
Q ss_pred -CCCCC-CCcccCchhHHHH
Q 044788 403 -LPATK-RPFRVPMEMLGLI 420 (483)
Q Consensus 403 -~~~~~-~~~~~~~~~~~~~ 420 (483)
+|+.+ ||||.|.++....
T Consensus 403 ~~~~~~~~p~~~p~~p~~~~ 422 (489)
T PRK10836 403 QGHDLNDLPYRSGFFPLGPI 422 (489)
T ss_pred cCCCcCCCCCcCCCccHHHH
Confidence 45654 7999999865443
No 16
>PRK10238 aromatic amino acid transporter; Provisional
Probab=100.00 E-value=1.6e-50 Score=408.19 Aligned_cols=381 Identities=16% Similarity=0.228 Sum_probs=315.7
Q ss_pred cccccccccccchhHHHhhhhhhcc-cccCchhhH-hhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCChHHHhH
Q 044788 34 STITVTSKKLSLLPLIFLIYFEVAG-GPYGEEPAV-GAAGPLFAILGFLIFPFIWSIPEALVTAELATTFPGNGGYVIWA 111 (483)
Q Consensus 34 ~~~~~~~r~l~~~~~~~~~i~~~iG-g~~~~~~~~-~~~G~~~~i~~~~~~~~~~~~~~~l~~~el~~~~p~~Gg~y~~~ 111 (483)
++++++||+++.++...+++|.++| |+|..++.. ..+|| ..+++|++++++ .++.+++++|+++++|.+||.|+|+
T Consensus 5 ~~~~~l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp-~~i~~~~i~gi~-~~~v~~s~aEl~s~~P~aGg~y~~~ 82 (456)
T PRK10238 5 QHGEQLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGP-GIILGYAIAGFI-AFLIMRQLGEMVVEEPVAGSFSHFA 82 (456)
T ss_pred ccchhhhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCc-HHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 4455799999999999999999999 787776654 55888 788999999998 9999999999999999999999999
Q ss_pred HHHhCChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHH
Q 044788 112 HHAFGPFWGSLMGSWKFLSGVINLASYPILCIDYLKLVFPIFASGFSHYLAIFVVTLVLSFLNYTGLAIVGYTAVTLGVV 191 (483)
Q Consensus 112 ~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~ 191 (483)
++.+||..||.+||.+++.+....+......+++++.++|. .+.+....++.++...+|++|+|..++++.+.+++
T Consensus 83 ~~~~g~~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p~----~~~~~~~~i~~~~~~~lN~~gv~~~~~~~~~~~~i 158 (456)
T PRK10238 83 YKYWGSFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYPE----IPTWVSAAVFFVVINAINLTNVKVFGEMEFWFAII 158 (456)
T ss_pred HHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc----CcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988899999887764 34555666777888999999999999999999999
Q ss_pred HHHHHHHHHHHHh---ccc--cc-cccccc-CCCC-CCCchH---HHHHHHHHHhcchHhhhhhhhhccCcCcchHHHHH
Q 044788 192 SLIPFLFLTVIAI---PKI--DS-IRWISL-GQNG-VPKNWR---LFFNTLFWNLNFWDNASTLAGEVEQPQRTFPKALF 260 (483)
Q Consensus 192 ~i~~~~~~~i~~~---~~~--~~-~~~~~~-~~~~-~~~~~~---~~~~~~~~a~~G~e~~~~~~~E~k~p~r~~p~a~~ 260 (483)
++..++++++.++ ... ++ ..+.+. +..+ .+.++. ..+...+|+|.|+|.+++++||+|||+|++||++.
T Consensus 159 ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~knP~r~iPrAi~ 238 (456)
T PRK10238 159 KVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEADNPEQSIPKATN 238 (456)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHhhcChhhHHHHHHH
Confidence 9877665544322 111 11 111111 1111 122333 33445789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCccccHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCC
Q 044788 261 SAGLLTCVAYLLPLLAATGAIPLDQQNWVDGYFAEVAEIIAGKWLKICIEIGACLSIIGLYEAQLSNCAYQILGMTNLGL 340 (483)
Q Consensus 261 ~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~ 340 (483)
.+...+.++|+..........|+++....++|+.++.++.++++...++....+.+.+++.++.+++.+|++++|||||.
T Consensus 239 ~~~~~i~~~y~~~~~~~~~~~p~~~l~~~~sP~~~~~~~~g~~~~~~i~~~~i~~~~~s~~~~~~~~~sR~l~a~ardg~ 318 (456)
T PRK10238 239 QVIYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIFHELGDTFVANALNIVVLTAALSVYNSCVYCNSRMLFGLAQQGN 318 (456)
T ss_pred HHHHHHHHHHHHHHHHHheecChhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999988887778888887777789999998888888888889999999999999999999999999999999
Q ss_pred CchhhhccCCCCCCCHHHHHHHHHHHHHHHhc-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--CCCcc
Q 044788 341 LPKVFGSRSSWFHTPWVGIFISTLIALTVSYM-------DFTNIISCVNFLYSLGMLLEFASFLWLRKKLPAT--KRPFR 411 (483)
Q Consensus 341 lP~~~~~~~~~~~~P~~ai~~~~i~~~~~~~~-------~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~--~~~~~ 411 (483)
+|++|+|+|| +++|++++++..+++.+..+. .++.+.++.+....+.|.+.+++.+++||++++. +++||
T Consensus 319 lP~~f~kv~~-~~~P~~Ail~~~~i~~l~~l~~~~~~~~~f~~l~~~~~~~~~i~y~~~~~~~l~~r~~~~~~~~~~~~~ 397 (456)
T PRK10238 319 APKALASVDK-RGVPVNTILVSALVTALCVLINYLAPESAFGLLMALVVSALVINWAMISLAHMKFRRAKQEQGVVTRFP 397 (456)
T ss_pred ccHHHHhhCc-CCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCc
Confidence 9999999997 799999999999888765532 3788999999999999999999999999886653 35677
Q ss_pred cCchhHHHHH
Q 044788 412 VPMEMLGLIF 421 (483)
Q Consensus 412 ~~~~~~~~~~ 421 (483)
.|.+++...+
T Consensus 398 ~~~~p~~~~~ 407 (456)
T PRK10238 398 ALLYPLGNWI 407 (456)
T ss_pred CCCccHHHHH
Confidence 7776544433
No 17
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=100.00 E-value=1.7e-50 Score=409.84 Aligned_cols=376 Identities=18% Similarity=0.263 Sum_probs=312.1
Q ss_pred ccccccccchhHHHhhhhhhcc-cccCchh-hHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCChHHHhHHHH
Q 044788 37 TVTSKKLSLLPLIFLIYFEVAG-GPYGEEP-AVGAAGPLFAILGFLIFPFIWSIPEALVTAELATTFPGNGGYVIWAHHA 114 (483)
Q Consensus 37 ~~~~r~l~~~~~~~~~i~~~iG-g~~~~~~-~~~~~G~~~~i~~~~~~~~~~~~~~~l~~~el~~~~p~~Gg~y~~~~~~ 114 (483)
++++|+++.++...+++|.++| |+|..++ ....+|| +.+++|++++++ .++.+++++|+++..|..|+.|.|+++.
T Consensus 16 ~~l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp-~~i~~~~i~~i~-~~~~~~s~aEl~s~~~~~~~~~~ya~~~ 93 (469)
T PRK11049 16 QSLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGP-SIIFVYMIIGFM-LFFVMRAMGELLLSNLEYKSFSDFASDL 93 (469)
T ss_pred hhhhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCc-HHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 4599999999999999999999 7876655 4556899 678999999998 8999999999999999999999999999
Q ss_pred hCChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHH
Q 044788 115 FGPFWGSLMGSWKFLSGVINLASYPILCIDYLKLVFPIFASGFSHYLAIFVVTLVLSFLNYTGLAIVGYTAVTLGVVSLI 194 (483)
Q Consensus 115 ~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~ 194 (483)
+||..||++||.+++++....+..+...+.|+..++|.. +.+..+.++++.++.+|++|+|..+++|.+.+.+++.
T Consensus 94 ~g~~~gf~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p~~----~~~~~~~~~~~~~~~iN~~g~~~~~~i~~~~~~~kl~ 169 (469)
T PRK11049 94 LGPWAGYFTGWTYWFCWVVTGIADVVAITAYAQFWFPDL----SDWVASLAVVLLLLSLNLATVKMFGEMEFWFAMIKIV 169 (469)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----cHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 999999999999999998777777778888888777743 2344555667788899999999999999999999988
Q ss_pred HHHHHHHHHhccc-----cc----ccccccCC-CC-CCCchH---HHHHHHHHHhcchHhhhhhhhhccCcCcchHHHHH
Q 044788 195 PFLFLTVIAIPKI-----DS----IRWISLGQ-NG-VPKNWR---LFFNTLFWNLNFWDNASTLAGEVEQPQRTFPKALF 260 (483)
Q Consensus 195 ~~~~~~i~~~~~~-----~~----~~~~~~~~-~~-~~~~~~---~~~~~~~~a~~G~e~~~~~~~E~k~p~r~~p~a~~ 260 (483)
.++++++.++... ++ .++.+... .+ .+.++. ..+...+|+|.|+|.+++++||+|||+||+||++.
T Consensus 170 ~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~iPrai~ 249 (469)
T PRK11049 170 AIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAETKDPEKSLPRAIN 249 (469)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHHhcCHhhHHHHHHH
Confidence 8777666554321 11 11221111 11 122333 34455789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCccccHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCC
Q 044788 261 SAGLLTCVAYLLPLLAATGAIPLDQQNWVDGYFAEVAEIIAGKWLKICIEIGACLSIIGLYEAQLSNCAYQILGMTNLGL 340 (483)
Q Consensus 261 ~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~ 340 (483)
.+.+.+.++|++.........|+++....++|+.+..+..++++...++.++.+++.+++.++.+.+.+|++++|||||.
T Consensus 250 ~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~a~ardg~ 329 (469)
T PRK11049 250 SIPIRIIMFYVFALIVIMSVTPWSSVVPDKSPFVELFVLVGLPAAASVINFVVLTSAASSANSGVFSTSRMLFGLAQEGV 329 (469)
T ss_pred HHHHHHHHHHHHHHHHHeeecCccccCccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 88888999999999998888888888777789999888888888888999999999999999999999999999999999
Q ss_pred CchhhhccCCCCCCCHHHHHHHHHHHHHHH----h-c----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--CC
Q 044788 341 LPKVFGSRSSWFHTPWVGIFISTLIALTVS----Y-M----DFTNIISCVNFLYSLGMLLEFASFLWLRKKLPATK--RP 409 (483)
Q Consensus 341 lP~~~~~~~~~~~~P~~ai~~~~i~~~~~~----~-~----~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~ 409 (483)
+|++|+|+|| +++|++++++..++..+.. . . .++.+.+..++.+.+.|.+.+++.+++|||+|+.+ ||
T Consensus 330 lP~~~~kv~~-~~tP~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~a~~~lr~~~p~~~~~~p 408 (469)
T PRK11049 330 APKAFAKLSK-RAVPAKGLTFSCICLLGGVVLLYVNPSVIGAFTLVTTVSAILFMFVWTIILCSYLVYRKQRPHLHEKSI 408 (469)
T ss_pred CCHHHHhhCC-CCCCHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCC
Confidence 9999999998 6999999999877654311 1 1 36778888888999999999999999999988865 58
Q ss_pred cccCchhHHH
Q 044788 410 FRVPMEMLGL 419 (483)
Q Consensus 410 ~~~~~~~~~~ 419 (483)
||.|.+++..
T Consensus 409 f~~p~~~~~~ 418 (469)
T PRK11049 409 YKMPLGKLMC 418 (469)
T ss_pred ccCcCcchHH
Confidence 9998875433
No 18
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=100.00 E-value=1.9e-50 Score=408.73 Aligned_cols=416 Identities=18% Similarity=0.247 Sum_probs=325.6
Q ss_pred cccccccccchhHHHhhhhhhcc-cccCchhh-HhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCChHHHhHHH
Q 044788 36 ITVTSKKLSLLPLIFLIYFEVAG-GPYGEEPA-VGAAGPLFAILGFLIFPFIWSIPEALVTAELATTFPGNGGYVIWAHH 113 (483)
Q Consensus 36 ~~~~~r~l~~~~~~~~~i~~~iG-g~~~~~~~-~~~~G~~~~i~~~~~~~~~~~~~~~l~~~el~~~~p~~Gg~y~~~~~ 113 (483)
+.+++|+++.+|+.++++|.++| |+|..++. +..+|| ..+++|++++++ .++.+++++|+++++|++||.|.|+++
T Consensus 7 ~~~~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~-~~~i~~~i~~v~-~~~~a~~~aEl~s~~P~~Gg~~~~~~~ 84 (452)
T TIGR01773 7 GLKLPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGP-AALLAYLLAGLL-VVFIMRMLGEMAVANPDTGSFSTYADD 84 (452)
T ss_pred hHhHhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCC-HHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 55689999999999999999999 78877755 556888 466799999998 899999999999999999999999999
Q ss_pred HhCChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHH
Q 044788 114 AFGPFWGSLMGSWKFLSGVINLASYPILCIDYLKLVFPIFASGFSHYLAIFVVTLVLSFLNYTGLAIVGYTAVTLGVVSL 193 (483)
Q Consensus 114 ~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i 193 (483)
.+||..||++||.++++++...+..+...+.++..++|. .+.+..+++++++...+|++|+|..++++.+.+++++
T Consensus 85 ~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~n~~gv~~~~~~~~~~~~~ki 160 (452)
T TIGR01773 85 AIGRWAGFTIGWLYWWFWVLVIPLEAIAAAGILQYWFPD----IPLWLFSLILTIVLTLTNLYSVKSYGEFEFWFALIKV 160 (452)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc----CcHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence 999999999999999999999998888899999888764 3456777788888899999999999999999999888
Q ss_pred HHHHHHHHHHhc---cccc----ccccccCC-CC-CCCc---hHHHHHHHHHHhcchHhhhhhhhhccCcCcchHHHHHH
Q 044788 194 IPFLFLTVIAIP---KIDS----IRWISLGQ-NG-VPKN---WRLFFNTLFWNLNFWDNASTLAGEVEQPQRTFPKALFS 261 (483)
Q Consensus 194 ~~~~~~~i~~~~---~~~~----~~~~~~~~-~~-~~~~---~~~~~~~~~~a~~G~e~~~~~~~E~k~p~r~~p~a~~~ 261 (483)
+.++++++.++. ..++ .++++... .+ .+.+ +...+...+|+|.|+|.+++++||+|||+||+||++..
T Consensus 161 ~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~k~P~r~iPrAi~~ 240 (452)
T TIGR01773 161 IAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAESSNPIKSITRATNS 240 (452)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhhcChhhHHHHHHHH
Confidence 777665544331 1111 11121111 11 1223 33445567899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCcc-ccHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCC
Q 044788 262 AGLLTCVAYLLPLLAATGAIPLDQQNWV-DGYFAEVAEIIAGKWLKICIEIGACLSIIGLYEAQLSNCAYQILGMTNLGL 340 (483)
Q Consensus 262 ~~~~~~~~y~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~ 340 (483)
+...++++|++.........|+++.... ..|+.++.+..++++...++.++.+++.+++.++.+++.+|.+++|||||.
T Consensus 241 ~~~~~~~~y~l~~~~~~~~~p~~~~~~~~~~p~~~~~~~~g~~~~~~ii~~~~~~~~~~~~~~~~~~~sR~~~a~ardg~ 320 (452)
T TIGR01773 241 VIWRIIVFYLGSIFIVVALLPWNSPNLLEVGSYVAVLELLGIPHAKLIMDFVVLTAVLSCLNSALYTTSRMLYSLAERGD 320 (452)
T ss_pred HHHHHHHHHHHHHHHHeeEeCCCCcccccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999988888777776654332 348888888888888888888889999999999999999999999999999
Q ss_pred CchhhhccCCCCCCCHHHHHHHHHHHHHHHhc-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCc--c
Q 044788 341 LPKVFGSRSSWFHTPWVGIFISTLIALTVSYM-------DFTNIISCVNFLYSLGMLLEFASFLWLRKKLPATKRPF--R 411 (483)
Q Consensus 341 lP~~~~~~~~~~~~P~~ai~~~~i~~~~~~~~-------~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~--~ 411 (483)
+|++|+|+|| +++|++++++..+++++..+. .++.+.+..+....+.|.+.+++.+++|+|+|+.+||| |
T Consensus 321 lP~~~~~v~~-~~~P~~Ail~~~~~~~~~~l~~~~~~~~~f~~l~~~~~~~~~~~y~~~~~~~i~~r~~~~~~~~~~~~~ 399 (452)
T TIGR01773 321 APRVFMKLNK-KGVPVQAVLASTFFSFLTVVVNYFAPDKVFLFLVNSSGAIALLVYLVIAVSQLRMRKKLKANGEAIKIR 399 (452)
T ss_pred cCHHHHhhCC-CCCcHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 9999999996 899999999998888765432 15677788888888999999999999998877766654 4
Q ss_pred cCchhHHHHHHHHHHHHHHHHHH-Hhhh-hHHHHHHHHHHHHHHHHHHHH
Q 044788 412 VPMEMLGLIFMCIIPSGFLVYVM-VVAT-KMVCFVSALLTFFGIFLYFFI 459 (483)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~g~~~~~~~ 459 (483)
.+.+++.... +++...+..... ..++ .........+++.+.++|.+.
T Consensus 400 ~~~~p~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~y~~~ 448 (452)
T TIGR01773 400 MWLYPWLTWL-VIIFICGILVSMLFIPSMRDEVLLTGLLTIIVLCSYLVF 448 (452)
T ss_pred CCCccHHHHH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHh
Confidence 4545443333 333333333333 2333 344455555555555556554
No 19
>PRK10580 proY putative proline-specific permease; Provisional
Probab=100.00 E-value=4.3e-50 Score=406.11 Aligned_cols=417 Identities=18% Similarity=0.256 Sum_probs=327.5
Q ss_pred cccccccccchhHHHhhhhhhcc-cccCchhh-HhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCChHHHhHHH
Q 044788 36 ITVTSKKLSLLPLIFLIYFEVAG-GPYGEEPA-VGAAGPLFAILGFLIFPFIWSIPEALVTAELATTFPGNGGYVIWAHH 113 (483)
Q Consensus 36 ~~~~~r~l~~~~~~~~~i~~~iG-g~~~~~~~-~~~~G~~~~i~~~~~~~~~~~~~~~l~~~el~~~~p~~Gg~y~~~~~ 113 (483)
+++++|+++.+++.++++|.++| |+|..++. +..+|| ..+++|++++++ .++.+++++|+++++|++||.|.|+++
T Consensus 4 ~~~l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~-~~~l~~~i~~i~-~~~~a~~~aEl~s~~P~~Gg~y~y~~~ 81 (457)
T PRK10580 4 KNKLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGP-SVLLAYIIGGVA-AYIIMRALGEMSVHNPAASSFSRYAQE 81 (457)
T ss_pred CccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHH-HHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 35688999999999999999999 78877665 455888 579999999998 999999999999999999999999999
Q ss_pred HhCChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHH
Q 044788 114 AFGPFWGSLMGSWKFLSGVINLASYPILCIDYLKLVFPIFASGFSHYLAIFVVTLVLSFLNYTGLAIVGYTAVTLGVVSL 193 (483)
Q Consensus 114 ~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i 193 (483)
.+||..||++||.+++.+....+......+.++..++|.. +.+...+++.++...+|++|+|..++++.+++.+++
T Consensus 82 ~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~ln~~gv~~~~~~~~~~~~~~~ 157 (457)
T PRK10580 82 NLGPLAGYITGWTYCFEILIVAIADVTAFGIYMGVWFPTV----PHWIWVLSVVLIICAVNLMSVKVFGELEFWFSFFKV 157 (457)
T ss_pred HcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC----ChHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHH
Confidence 9999999999999999998877777778888888777642 334445566677889999999999999999999888
Q ss_pred HHHHHHHHHHh----cc-c---ccccccc-cCCCC-CCCchHH---HHHHHHHHhcchHhhhhhhhhccCcCcchHHHHH
Q 044788 194 IPFLFLTVIAI----PK-I---DSIRWIS-LGQNG-VPKNWRL---FFNTLFWNLNFWDNASTLAGEVEQPQRTFPKALF 260 (483)
Q Consensus 194 ~~~~~~~i~~~----~~-~---~~~~~~~-~~~~~-~~~~~~~---~~~~~~~a~~G~e~~~~~~~E~k~p~r~~p~a~~ 260 (483)
..++++++.++ .. . ++.+..+ +...+ .+.++.+ .+...+|+|.|+|.+++++||+|||+|++||+++
T Consensus 158 ~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~k~iPrAi~ 237 (457)
T PRK10580 158 ATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEAKDPEKSIPRAIN 237 (457)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhHHHHHHH
Confidence 77665544332 11 1 1111111 11111 1223433 3455789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCccccHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCC
Q 044788 261 SAGLLTCVAYLLPLLAATGAIPLDQQNWVDGYFAEVAEIIAGKWLKICIEIGACLSIIGLYEAQLSNCAYQILGMTNLGL 340 (483)
Q Consensus 261 ~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~ 340 (483)
.+.+.+.++|++.........|+++....+.|+....+..+.++...++.+..+.+.+++.++.+++.+|++++|||||.
T Consensus 238 ~~~~~~~~~y~~~~~~~~~~~p~~~i~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~ardg~ 317 (457)
T PRK10580 238 SVPMRILVFYVGTLFVIMSIYPWNQVGTNGSPFVLTFQHMGITFAASILNFVVLTASLSAINSDVFGVGRMLHGMAEQGS 317 (457)
T ss_pred HHHHHHHHHHHHHHHHHheecccCCCCccCChHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99888999999999888888888887766778888887777777778888888889999999999999999999999999
Q ss_pred CchhhhccCCCCCCCHHHHHHHHHHHHHHHh-------cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---CCCCc
Q 044788 341 LPKVFGSRSSWFHTPWVGIFISTLIALTVSY-------MDFTNIISCVNFLYSLGMLLEFASFLWLRKKLPA---TKRPF 410 (483)
Q Consensus 341 lP~~~~~~~~~~~~P~~ai~~~~i~~~~~~~-------~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~ 410 (483)
+|++|+|+|| +++|++++++..+..++..+ ..++.+.++.++...+.|.+.+++.+++||++++ .++||
T Consensus 318 lP~~~~kv~~-~~~P~~Ai~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~lr~~~~~~~~~~~~f 396 (457)
T PRK10580 318 APKIFSKTSR-RGIPWVTVLVMTTALLFAVYLNYIMPENVFLVIASLATFATVWVWIMILLSQIAFRRRLPPEEVKALKF 396 (457)
T ss_pred cCHHHHhhCC-CCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCc
Confidence 9999999997 89999999998765544321 1267888999999999999999999999987533 23589
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHHHHH
Q 044788 411 RVPMEMLGLIFMCIIPSGFLVYVM--VVATKMVCFVSALLTFFGIFLYFFIK 460 (483)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~ 460 (483)
|.|..++...+ +++...+.+... ....+....++..+++++.+.|..++
T Consensus 397 ~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~y~~~~ 447 (457)
T PRK10580 397 KVPGGVATTIG-GLIFLVFIIGLIGYHPDTRISLYVGFAWIVLLLIGWMFKR 447 (457)
T ss_pred ccCCccHHHHH-HHHHHHHHHHHHHHCccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99877544333 333333333322 22234556777788888888887654
No 20
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=100.00 E-value=7.5e-50 Score=405.28 Aligned_cols=412 Identities=22% Similarity=0.272 Sum_probs=336.7
Q ss_pred ccccchhHHHhhhhhhcc-cccCchhhHhh-hChHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC-ChHHHhHHHHhCC
Q 044788 41 KKLSLLPLIFLIYFEVAG-GPYGEEPAVGA-AGPLFAILGFLIFPFIWSIPEALVTAELATTFPGN-GGYVIWAHHAFGP 117 (483)
Q Consensus 41 r~l~~~~~~~~~i~~~iG-g~~~~~~~~~~-~G~~~~i~~~~~~~~~~~~~~~l~~~el~~~~p~~-Gg~y~~~~~~~g~ 117 (483)
|+++++++.++++|+++| |+|..|+.... +||...+++|++++++ .++.+++++|+++++|++ ||.|.|+++.+||
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~-~~~~al~~aeL~s~~P~~gGG~y~y~~~~fG~ 79 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVG-MLALAFSFQNLANKKPELDGGVYSYAKAGFGP 79 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHH-HHHHHHHHHHHHhhCCCCCCChhhhHHhHcCc
Confidence 689999999999999999 88988877654 7887788999999998 999999999999999997 5999999999999
Q ss_pred hhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhccccc--cchHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHH
Q 044788 118 FWGSLMGSWKFLSGVINLASYPILCIDYLKLVFPIFA--SGFSHYLAIFVVTLVLSFLNYTGLAIVGYTAVTLGVVSLIP 195 (483)
Q Consensus 118 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~ 195 (483)
..||++||.+|+++.......+.....++..++|... ++.+....+.++++.+..+|++|+|..+++|.+.+++++++
T Consensus 80 ~~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~i~~i~~~~ki~~ 159 (468)
T TIGR03810 80 FMGFISAWGYWLSAWLGNVAYATLLFSTLGYFFPIFGGGNNPPSIIGASVLLWCVHFLVLRGVEGAAFINTITTIAKLVP 159 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999877777777667777777777543 22344566667777889999999999999999999999988
Q ss_pred HHHHHHHHhccccccccccc--C--CCC--CCC---chHHHHHHHHHHhcchHhhhhhhhhccCcCcchHHHHHHHHHHH
Q 044788 196 FLFLTVIAIPKIDSIRWISL--G--QNG--VPK---NWRLFFNTLFWNLNFWDNASTLAGEVEQPQRTFPKALFSAGLLT 266 (483)
Q Consensus 196 ~~~~~i~~~~~~~~~~~~~~--~--~~~--~~~---~~~~~~~~~~~a~~G~e~~~~~~~E~k~p~r~~p~a~~~~~~~~ 266 (483)
++++++.++...+.+++.+. . .++ ... ++...+...+|+|.|+|.+++++||.|| +||+||++..+...+
T Consensus 160 l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~-~k~ip~ai~~~~~~v 238 (468)
T TIGR03810 160 LFVFIVIGIFAFKGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEK-RSDVGKATVIGLIGV 238 (468)
T ss_pred HHHHHHHHHHHhcHhhcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhccC-cccchHHHHHHHHHH
Confidence 87777665543333222211 0 000 011 1223445678999999999999999998 699999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCCCccccH-HHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCCCchhh
Q 044788 267 CVAYLLPLLAATGAIPLDQQNWVDGY-FAEVAEIIAGKWLKICIEIGACLSIIGLYEAQLSNCAYQILGMTNLGLLPKVF 345 (483)
Q Consensus 267 ~~~y~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~~ 345 (483)
.++|++......+..|.+++.+.++| ...+.++..+++...++.++++++.+++.++.+.+.+|++++|||||.+|++|
T Consensus 239 ~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~~~~~~g~~~~~~i~~~~~is~~~~~~~~~~~~sR~~~a~ardg~lP~~f 318 (468)
T TIGR03810 239 LAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLEHMVGTWGAVLINIGLIISILGAWLSWTLLPAEIPLLMAKDKLMPKYF 318 (468)
T ss_pred HHHHHHHHHHHHhCcCHHHHhcCCCchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHH
Confidence 99999999999998888776655555 77788888889999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCCHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCCcccCchhHH
Q 044788 346 GSRSSWFHTPWVGIFISTLIALTVSY------MDFTNIISCVNFLYSLGMLLEFASFLWLRKKLPA-TKRPFRVPMEMLG 418 (483)
Q Consensus 346 ~~~~~~~~~P~~ai~~~~i~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~~~~~~~ 418 (483)
+|+|| +++|++++++..+++.++.+ ..++.+.++.+...++.|.+.+++.+++|+|+++ ..|+++
T Consensus 319 ~k~~~-~~tP~~al~~~~~i~~~~~l~~~~~~~~~~~l~~~~~~~~li~y~~~~~~~~~l~~~~~~~~~~~~~------- 390 (468)
T TIGR03810 319 GKENA-NGAPTNALWLTNGLIQIFLLTTLFSEQAYNFAISLATSAILVPYLWSAAYQVKLSWRGGQERGRRKQ------- 390 (468)
T ss_pred HhhCC-CCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhh-------
Confidence 99996 89999999998887755442 2488899999999999999999999999877632 223332
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 044788 419 LIFMCIIPSGFLVYVMVVATKMVCFVSALLTFFGIFLYFFIKLCR 463 (483)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 463 (483)
.+++.++.+++++..+..++.....+.+..+.|+.+|...|+++
T Consensus 391 -~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~ 434 (468)
T TIGR03810 391 -LLIGLVALLYAVWLIYAAGLKYLLLSAILYAPGIYFYARARKEK 434 (468)
T ss_pred -HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 13456667777888888889999999999999999997655443
No 21
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=100.00 E-value=1.3e-49 Score=405.67 Aligned_cols=420 Identities=17% Similarity=0.188 Sum_probs=321.1
Q ss_pred cccccchhHHHhhhhhhcc-cccCchh-hHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-CChHHHhHHHHhC
Q 044788 40 SKKLSLLPLIFLIYFEVAG-GPYGEEP-AVGAAGPLFAILGFLIFPFIWSIPEALVTAELATTFPG-NGGYVIWAHHAFG 116 (483)
Q Consensus 40 ~r~l~~~~~~~~~i~~~iG-g~~~~~~-~~~~~G~~~~i~~~~~~~~~~~~~~~l~~~el~~~~p~-~Gg~y~~~~~~~g 116 (483)
||+++.+++.++++|.++| |++..++ .+..+||.+.+++|++++++ .++.+++++|+++++|+ .||.|.|+++.+|
T Consensus 1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~-~~~~a~~~aEl~s~~P~~gG~~~~~~~~~~g 79 (478)
T TIGR00913 1 KKSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSI-IYCVMQSLGEMATFYPVVSGSFATYASRFVD 79 (478)
T ss_pred CCCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCCCCCCHHHHHHHHcC
Confidence 5889999999999999999 7776544 45668987789999999998 99999999999999995 5678889999999
Q ss_pred ChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHH
Q 044788 117 PFWGSLMGSWKFLSGVINLASYPILCIDYLKLVFPIFASGFSHYLAIFVVTLVLSFLNYTGLAIVGYTAVTLGVVSLIPF 196 (483)
Q Consensus 117 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~~ 196 (483)
|..||++||.++++++...+......+.++..+.+.. +......++.++.+++|++|+|..+++|.+.+.++++.+
T Consensus 80 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~in~~gv~~~~~~~~~~~~~ki~~l 155 (478)
T TIGR00913 80 PAFGFAVGWNYWLQWLIVLPLELVTASMTIQYWTDKV----NPAVWIAIFYVFIVIINLFGVKGYGEAEFWFSSIKILAI 155 (478)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999888888888665532 222223345567789999999999999999988887666
Q ss_pred HHHHHHHhcc--cc---cc-----ccccc-CCCCC-----CCchHHHHHHHHHHhcchHhhhhhhhhccCcCcchHHHHH
Q 044788 197 LFLTVIAIPK--ID---SI-----RWISL-GQNGV-----PKNWRLFFNTLFWNLNFWDNASTLAGEVEQPQRTFPKALF 260 (483)
Q Consensus 197 ~~~~i~~~~~--~~---~~-----~~~~~-~~~~~-----~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~p~r~~p~a~~ 260 (483)
+.+++.++.. .+ .. ++.+. ..... ..++...+...+|+|.|+|.+++++||+|||+||+||+++
T Consensus 156 ~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~iPrai~ 235 (478)
T TIGR00913 156 IGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGEAANPRKSIPRAAK 235 (478)
T ss_pred HHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHhhcChhhHHHHHHH
Confidence 6555443221 11 11 01000 00000 0122333445689999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCC--CCc-------cccHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 044788 261 SAGLLTCVAYLLPLLAATGAIPLDQ--QNW-------VDGYFAEVAEIIAGKWLKICIEIGACLSIIGLYEAQLSNCAYQ 331 (483)
Q Consensus 261 ~~~~~~~~~y~l~~~~~~~~~~~~~--~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~ 331 (483)
.+..+++++|++..+......|+++ +.. .+.|+....+..+.++...++.++.+++.+++.++.+++.+|+
T Consensus 236 ~~~~~~~~~Y~l~~~~~~~~~p~~~~~l~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~ 315 (478)
T TIGR00913 236 RTFWRILVFYILTLFLIGFLVPYNDPRLLSSSSSSDSAASPFVIAIQNHGIKVLPHIFNAVILISVLSAANSSLYASSRT 315 (478)
T ss_pred HHHHHHHHHHHHHHHHheeeccCCChhhcccccCCCcCCCcHHHHHHHcCCchHhHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999999999888777777654 211 1367777777777788888999999999999999999999999
Q ss_pred HHHhhhcCCCchhhhccCCCCCCCHHHHHHHHHHHHHHHh-c------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-
Q 044788 332 ILGMTNLGLLPKVFGSRSSWFHTPWVGIFISTLIALTVSY-M------DFTNIISCVNFLYSLGMLLEFASFLWLRKKL- 403 (483)
Q Consensus 332 l~~~a~dg~lP~~~~~~~~~~~~P~~ai~~~~i~~~~~~~-~------~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~- 403 (483)
+++|||||.+|++|+|+|| +++|++++++..+++++..+ . .++.+.++.+....+.|++.+++.+++|+++
T Consensus 316 l~a~ardg~lP~~f~k~~~-~~~P~~Ai~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~~~i~~r~~~~ 394 (478)
T TIGR00913 316 LYALAHQGLAPKIFAYVDR-RGVPYVAVIVSSLFGLLAFLAVSKKEAEVFTWLLNISGLSGFFTWMCICLSHIRFRKAMK 394 (478)
T ss_pred HHHHHhCCcccHHHHhhCC-CCCCHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999996 89999999999888765432 1 2788899999999999999999999998762
Q ss_pred ----CCCCCCcccCchhHHHHHHHHHHHHHHHHHHH---hh---hhHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 044788 404 ----PATKRPFRVPMEMLGLIFMCIIPSGFLVYVMV---VA---TKMVCFVSALLTFFGIFLYFFIKLCRSN 465 (483)
Q Consensus 404 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 465 (483)
++.+||||.|.+++...+..+.+...+..... .+ +....+...+.+.+++.+|..++.++|+
T Consensus 395 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (478)
T TIGR00913 395 AQGRSLDELPYKSQTGPYGSYYALFFNILILIAQGYVAFAPVKFSAKSFFEAYLSLPIFIALYIGHKVYKRD 466 (478)
T ss_pred hcCCCcccCCccCCCcchHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34478999998865444333333332222221 11 3444556666666777777776665543
No 22
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=100.00 E-value=2.7e-49 Score=374.22 Aligned_cols=422 Identities=18% Similarity=0.233 Sum_probs=355.4
Q ss_pred ccccccccccchhHHHhhhhhhcc-ccc-CchhhHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCChHHHhHH
Q 044788 35 TITVTSKKLSLLPLIFLIYFEVAG-GPY-GEEPAVGAAGPLFAILGFLIFPFIWSIPEALVTAELATTFPGNGGYVIWAH 112 (483)
Q Consensus 35 ~~~~~~r~l~~~~~~~~~i~~~iG-g~~-~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~l~~~el~~~~p~~Gg~y~~~~ 112 (483)
++++++|.|+.+|.-.+++|..+| |.| +.+..++.+|| +.++++++++++ .+.+.-+++|+...-|++|+..+|++
T Consensus 7 ~~~~l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AGP-SvlLaY~I~G~~-~f~iMRaLGEm~~~~p~~gSF~~~a~ 84 (462)
T COG1113 7 EEQGLKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAGP-SVLLAYLIAGIF-VFLIMRALGEMLVANPVSGSFSDYAR 84 (462)
T ss_pred cchhhhhhhHHHHHHHHHHhhhhhhhhhcccchhhhhhCc-HHHHHHHHHHHH-HHHHHHHHHHHHHhCCCCCcHHHHHH
Confidence 355689999999999999999999 775 77888899999 899999999998 88889999999999999999999999
Q ss_pred HHhCChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHH
Q 044788 113 HAFGPFWGSLMGSWKFLSGVINLASYPILCIDYLKLVFPIFASGFSHYLAIFVVTLVLSFLNYTGLAIVGYTAVTLGVVS 192 (483)
Q Consensus 113 ~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~ 192 (483)
+.+||..||.+||.||+.++....+...+.+.|++.++|+ .|.|+.++++.++...+|+.++|..+..+..+..++
T Consensus 85 ~~lG~~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~----vP~Wv~al~~~~l~~~~NL~sVk~FGE~EfWfAlIK 160 (462)
T COG1113 85 KYLGPWAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFPD----VPQWVFALAAVVLLLAVNLISVKVFGELEFWFALIK 160 (462)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999997 578899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcc------cc--cccccccCCCC--CCCchHHHH---HHHHHHhcchHhhhhhhhhccCcCcchHHHH
Q 044788 193 LIPFLFLTVIAIPK------ID--SIRWISLGQNG--VPKNWRLFF---NTLFWNLNFWDNASTLAGEVEQPQRTFPKAL 259 (483)
Q Consensus 193 i~~~~~~~i~~~~~------~~--~~~~~~~~~~~--~~~~~~~~~---~~~~~a~~G~e~~~~~~~E~k~p~r~~p~a~ 259 (483)
++.++.+++.++.- .+ ...++....++ -+.++.+++ ..++|+|.|.|.+...++|+|||+|.+|||+
T Consensus 161 V~aIi~~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP~k~ipkAi 240 (462)
T COG1113 161 VAAIIAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEAKDPEKAIPKAI 240 (462)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhhcChhhHHHHHH
Confidence 98888777665421 11 11222222222 355666654 5578999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCCccccHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcC
Q 044788 260 FSAGLLTCVAYLLPLLAATGAIPLDQQNWVDGYFAEVAEIIAGKWLKICIEIGACLSIIGLYEAQLSNCAYQILGMTNLG 339 (483)
Q Consensus 260 ~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg 339 (483)
-.-..-..++|+...+.+....|+++...+++|+...++..+-|+...++++.++.+.+++.|+.+++.+|++|.+|+||
T Consensus 241 n~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV~~f~~iGi~~Aa~i~N~VVLtAa~S~~NSglystsRmL~~la~~g 320 (462)
T COG1113 241 NSVIWRILIFYVGSLFVILSLYPWNQIGEDGSPFVTVFSLIGIPFAAGIMNFVVLTAALSALNSGLYSTSRMLYSLAKQG 320 (462)
T ss_pred hhhhHHHHHHHHHHHHHHheeccccccCCCCCcHHHHHHHcCCcccccceeEEEeechhhcccccccccchHHHHHhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhhccCCCCCCCHHHHHHHHHHHHHHHhc-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--CCCc
Q 044788 340 LLPKVFGSRSSWFHTPWVGIFISTLIALTVSYM-------DFTNIISCVNFLYSLGMLLEFASFLWLRKKLPAT--KRPF 410 (483)
Q Consensus 340 ~lP~~~~~~~~~~~~P~~ai~~~~i~~~~~~~~-------~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~--~~~~ 410 (483)
..|+.++|++| +++|++++++..+...+.... .|+.+.+..+...+..|.+..++.+++||++++. +.+|
T Consensus 321 ~APk~~~klsk-~gVP~~ai~~s~~~~~~~V~Lny~~P~~vF~~v~s~s~~~~l~vW~~I~~s~l~~rk~~~~~~~~~~f 399 (462)
T COG1113 321 DAPKAFAKLSK-RGVPVNAILLSAVVLLLGVVLNYILPEKVFELVTSSSGLGLLFVWLMILLSQLKLRKAKPAEGKKLKF 399 (462)
T ss_pred cccHhHhhccc-cCCCHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhcccCccc
Confidence 99999999999 999999999988877665532 2889999999999999999999999999965544 3369
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHhh-hh-HHHHHHHHHHHHHHHHHHHHHHHhc
Q 044788 411 RVPMEMLGLIFMCIIPSGFLVYVMVVA-TK-MVCFVSALLTFFGIFLYFFIKLCRS 464 (483)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~g~~~~~~~~~~~~ 464 (483)
|+|.++....+ +++.+++.+..+... +. .....+.+++++..+.|...+++++
T Consensus 400 km~~~p~~~~l-~l~fl~~vlv~m~~~~~t~~~~~~~~~~~~~l~i~~~~~~~~~~ 454 (462)
T COG1113 400 KMPLYPFTNYL-TLAFLAFVLVLMLFDPDTRISLLVGPVWLVLLGIGYLVKRKKKA 454 (462)
T ss_pred ccccccHHHHH-HHHHHHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 99988654433 344444444444333 33 4455555666655555555544333
No 23
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=100.00 E-value=1.7e-48 Score=392.41 Aligned_cols=408 Identities=19% Similarity=0.218 Sum_probs=321.9
Q ss_pred hhhhhhcc-cccCchh-hHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCChHHHhHHHHhCChhHHHHHHHHH
Q 044788 51 LIYFEVAG-GPYGEEP-AVGAAGPLFAILGFLIFPFIWSIPEALVTAELATTFPGNGGYVIWAHHAFGPFWGSLMGSWKF 128 (483)
Q Consensus 51 ~~i~~~iG-g~~~~~~-~~~~~G~~~~i~~~~~~~~~~~~~~~l~~~el~~~~p~~Gg~y~~~~~~~g~~~g~~~g~~~~ 128 (483)
+++|.++| |+|..++ ....+|| ..+++|++++++ .++.+++++|+++++|++||.|.|++|.+||.+||.+||.++
T Consensus 2 ~~ig~~IGsGif~~~g~~~~~aG~-~~ll~~~i~gi~-~~~~al~~aEL~s~~P~~Gg~y~y~~~~~G~~~gf~~gw~~~ 79 (446)
T PRK10197 2 LSIAGVIGASLFVGSSVAIAEAGP-AVLLAYLFAGLL-VVMIMRMLAEMAVATPDTGSFSTYADKAIGRWAGYTIGWLYW 79 (446)
T ss_pred eeecchhHhHHHHHhHHHHHhcCh-HHHHHHHHHHHH-HHHHHHHHHHHHHhCCCCCCHHHHHHHHcChHHHHHHHHHHH
Confidence 56788889 7876666 4566898 688999999998 999999999999999999999999999999999999999999
Q ss_pred HHhhhhHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHhccc-
Q 044788 129 LSGVINLASYPILCIDYLKLVFPIFASGFSHYLAIFVVTLVLSFLNYTGLAIVGYTAVTLGVVSLIPFLFLTVIAIPKI- 207 (483)
Q Consensus 129 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~- 207 (483)
+.++...+..+...+.++..+.|. .+.+.++.+++++++.+|++|+|..+++|.+.+.++++.++++++.++...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~lN~~gv~~~~~i~~~~~~~ki~~li~~ii~~~~~~~ 155 (446)
T PRK10197 80 WFWVLVIPLEANIAAMILHSWVPG----IPIWLFSLVITLALTGSNLLSVKNYGEFEFWLALCKVIAILAFIFLGAVAIS 155 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccc----CcHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999988888877777777766553 355677888888899999999999999999999999888777666544311
Q ss_pred --cc----cccccc-CCCC-CCCchH---HHHHHHHHHhcchHhhhhhhhhccCcCcchHHHHHHHHHHHHHHHHHHHHH
Q 044788 208 --DS----IRWISL-GQNG-VPKNWR---LFFNTLFWNLNFWDNASTLAGEVEQPQRTFPKALFSAGLLTCVAYLLPLLA 276 (483)
Q Consensus 208 --~~----~~~~~~-~~~~-~~~~~~---~~~~~~~~a~~G~e~~~~~~~E~k~p~r~~p~a~~~~~~~~~~~y~l~~~~ 276 (483)
++ .++.+. +..+ .+.++. ..+...+|+|.|+|.+++.+||+|||+||+||++..+...+.++|++..+.
T Consensus 156 g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~r~iPrai~~~~~~i~i~Yil~~~~ 235 (446)
T PRK10197 156 GFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVRATNSVIWRISIFYLCSIFV 235 (446)
T ss_pred CCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 111111 1011 122343 344557899999999999999999999999999999999999999999999
Q ss_pred HhhccCCCCCCcc-ccHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCCCchhhhccCCCCCCC
Q 044788 277 ATGAIPLDQQNWV-DGYFAEVAEIIAGKWLKICIEIGACLSIIGLYEAQLSNCAYQILGMTNLGLLPKVFGSRSSWFHTP 355 (483)
Q Consensus 277 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~~~~~~~~~~~P 355 (483)
.....|+++.+.. ..+...+.+..++++...++.++.+++.+++.++.+++.+|+++++||||.+|++|+|+|| +++|
T Consensus 236 ~~~~~p~~~~~~~~~~~~~~~~~~~g~~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ardg~lP~~~~~~~~-~~~P 314 (446)
T PRK10197 236 VVALIPWNMPGLKAVGSYRSVLELLNIPHAKLIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDAPAVMGKINR-SKTP 314 (446)
T ss_pred HheecCcCcccccccCcHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHhhCc-CCCc
Confidence 8888888754322 3466677788888888899999999999999999999999999999999999999999995 8999
Q ss_pred HHHHHHHHHHHHHHHhc-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCCCCcccCchhHHHHHHHHHH
Q 044788 356 WVGIFISTLIALTVSYM-------DFTNIISCVNFLYSLGMLLEFASFLWLRKK--LPATKRPFRVPMEMLGLIFMCIIP 426 (483)
Q Consensus 356 ~~ai~~~~i~~~~~~~~-------~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~ 426 (483)
+++++++.+++++..+. .++.+.+..+....+.|.+.+++.+++||+ +++.++|||.|++++...+.....
T Consensus 315 ~~Ail~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~li~y~~~~~a~i~lr~~~~~~~~~~~~~~~~~p~~~~~~i~~~ 394 (446)
T PRK10197 315 YVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIALLVYLVIAVSQLRMRKILRAEGSEIRLRMWLYPWLTWLVIGFI 394 (446)
T ss_pred HHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCCCcchHHHHHHHHH
Confidence 99999998777654421 478899999999999999999999999986 334467899988865544432322
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH-HHHHHhcc
Q 044788 427 SGFLVYVMVVATKMVCFVSALLTFFGIFLYF-FIKLCRSN 465 (483)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~ 465 (483)
...++...+.++......+.+++++++..|+ ..+|.+|+
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (446)
T PRK10197 395 TFVLVVMLFRPAQQLEVISTGLLAIGIICTVPIMARWKKL 434 (446)
T ss_pred HHHHHHHHHCcchHHHHHHHHHHHHHHHhhhHHHhhhccc
Confidence 2233333333455555667788888888887 55444443
No 24
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=3.4e-49 Score=381.29 Aligned_cols=422 Identities=17% Similarity=0.207 Sum_probs=345.3
Q ss_pred cccccccchhHHHhhhhhhcc-ccc-CchhhHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCChHHHhHHHHh
Q 044788 38 VTSKKLSLLPLIFLIYFEVAG-GPY-GEEPAVGAAGPLFAILGFLIFPFIWSIPEALVTAELATTFPGNGGYVIWAHHAF 115 (483)
Q Consensus 38 ~~~r~l~~~~~~~~~i~~~iG-g~~-~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~l~~~el~~~~p~~Gg~y~~~~~~~ 115 (483)
++||+|...|+..+++|..+| |.| +.+.++.++||.+.++++.+.+.+ ..++..+++||+..+|.+|+..+|++|..
T Consensus 41 ~lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~-vy~vm~sLGEma~~~P~sGsF~~ya~rfv 119 (541)
T COG0833 41 ELKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIM-VYFVMQSLGELAVFYPVSGSFSTYATRFV 119 (541)
T ss_pred hhhhhhhHHHHHHHHhccccccceeeecchhhhccCcHHHHHHHHHHHHH-HHHHHHHHHHHHhhcCCCCchhhhhhhhc
Confidence 599999999999999999999 775 778889999999999999999998 99999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHH
Q 044788 116 GPFWGSLMGSWKFLSGVINLASYPILCIDYLKLVFPIFASGFSHYLAIFVVTLVLSFLNYTGLAIVGYTAVTLGVVSLIP 195 (483)
Q Consensus 116 g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~ 195 (483)
+|-+||..||.||+.|..+.+....+.+..++.++|.. .+.+++..++.+++.++|.+++|..+..+.++..++++.
T Consensus 120 dpa~GFa~gWnYw~~w~v~~~~El~aa~~vi~yW~p~~---v~~~~w~~iF~~~i~~iN~~~Vk~fGE~Efw~s~iKV~~ 196 (541)
T COG0833 120 DPAFGFALGWNYWLNWAVTLPLELTAASLVIQYWFPDT---VPPWIWIAIFLVLIFLLNLFGVKGFGETEFWFSSIKVLT 196 (541)
T ss_pred CchHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhcCCC---CChHHHHHHHHHHHHHHHHhcccccceehHHHHHHHHHH
Confidence 99999999999999999999999999999999998753 466777778889999999999999999999999999988
Q ss_pred HHHHHHHHhcc--cc-c--cc--ccccCCCC-CCCchHHH---HHHHHHHhcchHhhhhhhhhccCcCcchHHHHHHHHH
Q 044788 196 FLFLTVIAIPK--ID-S--IR--WISLGQNG-VPKNWRLF---FNTLFWNLNFWDNASTLAGEVEQPQRTFPKALFSAGL 264 (483)
Q Consensus 196 ~~~~~i~~~~~--~~-~--~~--~~~~~~~~-~~~~~~~~---~~~~~~a~~G~e~~~~~~~E~k~p~r~~p~a~~~~~~ 264 (483)
++.+++.++.. +. + +. ..-+..++ -..++.++ +....|+|.|.|.+.-.++|.|||+|++|||+--...
T Consensus 197 ii~Fii~gii~~~Gg~~~~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP~K~iPkAik~vfw 276 (541)
T COG0833 197 IIGFIILGIIIICGGGPTHGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGESENPRKSIPKAIKQVFW 276 (541)
T ss_pred HHHHHHHHHHHhcCCCCCCCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecccCCchhhhHHHHHHHHH
Confidence 88777765431 11 1 10 00001111 12234444 4446799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCC--------CccccHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhh
Q 044788 265 LTCVAYLLPLLAATGAIPLDQQ--------NWVDGYFAEVAEIIAGKWLKICIEIGACLSIIGLYEAQLSNCAYQILGMT 336 (483)
Q Consensus 265 ~~~~~y~l~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a 336 (483)
.+.++|++..+.+...+|+++- ....+|+..+.+..+.+..+.+++++++.++++..|+.++++||++++||
T Consensus 277 RIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SPFvia~~~~Gi~~~~~imNaVIL~svlSa~NS~lYasSR~L~sLA 356 (541)
T COG0833 277 RILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAIKNAGIPVAASIMNAVILTSVLSAANSGLYASSRMLYSLA 356 (541)
T ss_pred HHHHHHHHHHHHheEEccCCCcccccCCcCCccCCChhHhHHhcCCccchHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence 9999999999999999998651 23457999999999999999999999999999999999999999999999
Q ss_pred hcCCCchhhhccCCCCCCCHHHHHHHHHHHHHHHhc-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----C
Q 044788 337 NLGLLPKVFGSRSSWFHTPWVGIFISTLIALTVSYM-------DFTNIISCVNFLYSLGMLLEFASFLWLRKKLP----A 405 (483)
Q Consensus 337 ~dg~lP~~~~~~~~~~~~P~~ai~~~~i~~~~~~~~-------~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~----~ 405 (483)
+||..||.|+|+|| +|+|++|+++..+++++..+. .|+++.+++++..++.++..+++.+++||..+ +
T Consensus 357 ~~g~APk~f~~~~r-~GvP~~al~vt~~fg~lafl~~~~~~~~vf~wL~~isg~s~~i~W~~I~~shirFR~A~~~QG~s 435 (541)
T COG0833 357 KQGKAPKIFAKVDR-RGVPLVALLVTLLFGLLAFLNSSFKETTVFNWLLNISGLSGFIAWGSICLSHIRFRRAMKAQGRS 435 (541)
T ss_pred hcCCCchHHHhhCC-CCCchHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999 899999999998888776532 38999999999999999999999999887532 2
Q ss_pred C-CCCcccCchhHHHHHHHHHHHHHHHHHHH---hh---hhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044788 406 T-KRPFRVPMEMLGLIFMCIIPSGFLVYVMV---VA---TKMVCFVSALLTFFGIFLYFFIKLCRS 464 (483)
Q Consensus 406 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~ 464 (483)
. +-|||.|.+++......++..++++...+ .+ ++.........+-+.+++|..++.++|
T Consensus 436 ~~~L~yks~~~p~g~~~~~~~~~li~i~q~y~af~p~~~~~~~F~~~Yl~~pi~i~~y~~yk~~~k 501 (541)
T COG0833 436 LDELPYKSPFGPYGPIYGLILCILILIGQGYVAFFPIGFSAGDFFAAYLGLPIFIAIYIGYKLYKK 501 (541)
T ss_pred hhhcCccCCCccHHHHHHHHHHHHHHHHcchheeecCCccHHHHHHHHHHHHHHHHHHHHheeEec
Confidence 2 34899999987666655544444443222 11 233444444444444555555544433
No 25
>PRK11021 putative transporter; Provisional
Probab=100.00 E-value=7.8e-48 Score=384.76 Aligned_cols=376 Identities=17% Similarity=0.191 Sum_probs=295.1
Q ss_pred ccchhHHHhhhhhhcc-cccCchhhHhh-hChHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCChHHHhHHHHhCChhH
Q 044788 43 LSLLPLIFLIYFEVAG-GPYGEEPAVGA-AGPLFAILGFLIFPFIWSIPEALVTAELATTFPGNGGYVIWAHHAFGPFWG 120 (483)
Q Consensus 43 l~~~~~~~~~i~~~iG-g~~~~~~~~~~-~G~~~~i~~~~~~~~~~~~~~~l~~~el~~~~p~~Gg~y~~~~~~~g~~~g 120 (483)
+++++..++.+|+++| |+|..|+.... +|| ..+++|++++++ .++.+++++|+++++|++||.|.|+++.+||.+|
T Consensus 1 ~g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~-~~~~~~~i~~~~-~~~~al~~aEl~s~~P~aGG~y~y~~~~~G~~~g 78 (410)
T PRK11021 1 LGLWQGIGLLSTSLLGTGVFAVPALAALVAGN-NSLWAWPLLILL-IFPIAIVFARLGRHFPHAGGPAHFVGMAFGPRLG 78 (410)
T ss_pred CcHHHHHHHHHHHHHhhHHHHhHHHHHHhcCc-hHHHHHHHHHHH-HHHHHHHHHHHHHhCCCCCCHHHhHHHHhCchhH
Confidence 5789999999999999 88988887655 788 788999999998 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHH
Q 044788 121 SLMGSWKFLSGVINLASYPILCIDYLKLVFPIFASGFSHYLAIFVVTLVLSFLNYTGLAIVGYTAVTLGVVSLIPFLFLT 200 (483)
Q Consensus 121 ~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~~~~~~ 200 (483)
|.+||.++..+....+........++...+|.. .++...+.+++.++.+.+|++|+|..++++.++..+.+..++..
T Consensus 79 f~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ln~~Gv~~~~~~~~~~~~~~~~i~~~~- 155 (410)
T PRK11021 79 RVTGWLFLSVIPVGLPAALQIAAGFGQALFGWS--SWQLLLAELLTLALLWLLNLRGASSSANLQTVIALLIVALVVAI- 155 (410)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCC--CchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-
Confidence 999999998776655555555566777666642 34456667777888899999999999999988775544332222
Q ss_pred HHHhcccccccccccCCCCCCCchHHH---HHHHHHHhcchHhhhhhhhhccCcCcchHHHHHHHHHHHHHHHHHHHHHH
Q 044788 201 VIAIPKIDSIRWISLGQNGVPKNWRLF---FNTLFWNLNFWDNASTLAGEVEQPQRTFPKALFSAGLLTCVAYLLPLLAA 277 (483)
Q Consensus 201 i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~a~~G~e~~~~~~~E~k~p~r~~p~a~~~~~~~~~~~y~l~~~~~ 277 (483)
....+.+++++...+.. +.++.++ +...+|+|.|+|.+++++||+|||+||+||+++.+..+++++|++.....
T Consensus 156 -~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k~iPrAi~~~~~~~~~lYil~~~~~ 232 (410)
T PRK11021 156 -WWAGDIKPADIPFPAPG--SIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPERDFPRALMIGLLLAGLVYWACTVVV 232 (410)
T ss_pred -HHHcCCchhcCCCCCCC--CccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 12222233332111111 2344444 45578999999999999999999999999999999999999999998887
Q ss_pred hhccCCCCCCccccHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCCCchhhhccCCCCCCCHH
Q 044788 278 TGAIPLDQQNWVDGYFAEVAEIIAGKWLKICIEIGACLSIIGLYEAQLSNCAYQILGMTNLGLLPKVFGSRSSWFHTPWV 357 (483)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~~~~~~~~~~~P~~ 357 (483)
....+.++....+.|..++.++..+++...++.+..+++.+++.++.+.+.+|++++|+|||.+|++|+|+|| +++|++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ii~i~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~~~~k~~~-~~tP~~ 311 (410)
T PRK11021 233 LHFPAYGDKQAAAASLPGIFVQLFGGYALWVICVIGYLACFASVNIYTQSFARLVWSQAREGRPPSYLARLSA-RGVPVN 311 (410)
T ss_pred HhcCCCcchhhccccHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHhhcc-CCCcHH
Confidence 7666655444455677777777777777777888888999999999999999999999999999999999997 799999
Q ss_pred HHHHHHHHHHHHHh------cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccCchhHHHHHHHHHHHHHHH
Q 044788 358 GIFISTLIALTVSY------MDFTNIISCVNFLYSLGMLLEFASFLWLRKKLPATKRPFRVPMEMLGLIFMCIIPSGFLV 431 (483)
Q Consensus 358 ai~~~~i~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (483)
++++..+++.+..+ .+++.+.+..+...++.|.+..++.+++++|++ + .+.+++.+.++
T Consensus 312 ail~~~~i~~~~~l~~~~~~~~~~~l~~~~~~~~li~y~~~~~a~~~l~~~~~------------~---~~~~~~~~~~~ 376 (410)
T PRK11021 312 ALNAVLGCCAVSILLIYALGLNLEALIAYANGIFVLIYLLCMLAACKLLKGRY------------R---PLAVLGCLLCL 376 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhccch------------H---HHHHHHHHHHH
Confidence 99998877665432 368889999999999999999999998876531 1 12344455566
Q ss_pred HHHHhhhhHHH
Q 044788 432 YVMVVATKMVC 442 (483)
Q Consensus 432 ~~~~~~~~~~~ 442 (483)
+.....+++.+
T Consensus 377 ~~~~~~~~~~~ 387 (410)
T PRK11021 377 LLLVMLGWKML 387 (410)
T ss_pred HHHHHhhHHHH
Confidence 65556666653
No 26
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=100.00 E-value=5e-46 Score=378.20 Aligned_cols=371 Identities=22% Similarity=0.340 Sum_probs=277.1
Q ss_pred ccccchhHHHhhhhhhcccccCchhhHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCChHHHhHHHHhCChhH
Q 044788 41 KKLSLLPLIFLIYFEVAGGPYGEEPAVGAAGPLFAILGFLIFPFIWSIPEALVTAELATTFPGNGGYVIWAHHAFGPFWG 120 (483)
Q Consensus 41 r~l~~~~~~~~~i~~~iGg~~~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~l~~~el~~~~p~~Gg~y~~~~~~~g~~~g 120 (483)
||++.+++..+.+..+.+ ...+|. .+..|+ ..++.|+++++++.++.+++++|+++++|++||.|.|++|++||.+|
T Consensus 1 ~~~~~~~l~~~~~~~v~~-~~~~~~-~a~~G~-~~~~~~~i~~~~~~ip~al~~aEL~~~~P~~GG~y~~~~~a~G~~~g 77 (474)
T TIGR03813 1 KKLTVVTLAIMNITAVVS-LRGLPA-EAEYGL-SAAFYYLFAAIFFLVPVSLVAAELATAWPEKGGVFRWVGEAFGARWG 77 (474)
T ss_pred CcccHHHHHHHHHHHHHH-hhcchH-HHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCceeeHhhhcChhHH
Confidence 458889999998887754 333343 355777 67777889888757899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHhc------ccc-ccchHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHH-H
Q 044788 121 SLMGSWKFLSGVINLASYPILCIDYLKLVF------PIF-ASGFSHYLAIFVVTLVLSFLNYTGLAIVGYTAVTLGVV-S 192 (483)
Q Consensus 121 ~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~------~~~-~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~-~ 192 (483)
|.++|.+|+++....+......+..+.... +.. .+.+....+.+++.+..+.+|++|+|..++++.+...+ +
T Consensus 78 f~~gw~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~in~~gv~~~~~i~~~~~~~~~ 157 (474)
T TIGR03813 78 FLAIFMLWAQVTIWFPTVLTFGAVSLAFIGPEATVDESLAGNKLYVLVSVLFVYWLATFIALRGVAAFTKVAKWGGIVGT 157 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCcccccccHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 999999999987655443332333222221 111 12344445666777788899999999999999876443 3
Q ss_pred HHHHHHHHHHHhc---cccccc----ccccCCCCCCCchHH--HHHHHHHHhcchHhhhhhhhhccCcCcchHHHHHHHH
Q 044788 193 LIPFLFLTVIAIP---KIDSIR----WISLGQNGVPKNWRL--FFNTLFWNLNFWDNASTLAGEVEQPQRTFPKALFSAG 263 (483)
Q Consensus 193 i~~~~~~~i~~~~---~~~~~~----~~~~~~~~~~~~~~~--~~~~~~~a~~G~e~~~~~~~E~k~p~r~~p~a~~~~~ 263 (483)
+++++++++.++. ..++.. +.+..++ ..++.. .....+|+|.|+|.++.++||+|||+||+||+++.+.
T Consensus 158 ii~~~~~ii~~~~~~~~g~~~~~~~~~~~~~p~--~~~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~iPrAi~~~~ 235 (474)
T TIGR03813 158 IIPAAILVILGISYLLTGGESQIPLRWDDAFPD--FTNFDNVVLAASIFLFYAGMEMNAVHVKDVDNPDKNYPIAILIAA 235 (474)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCHHHhCCC--ccccccHHHHHHHHHHHhchhHhHHHHHhccCcccchhHHHHHHH
Confidence 4433333333221 111111 1111111 112222 2234578999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCcccc---HHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCC
Q 044788 264 LLTCVAYLLPLLAATGAIPLDQQNWVDG---YFAEVAEIIAGKWLKICIEIGACLSIIGLYEAQLSNCAYQILGMTNLGL 340 (483)
Q Consensus 264 ~~~~~~y~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~ 340 (483)
.+++++|++..+......|+++....+. ++.+..+..+.++...++.+...++.+++.++.+.+.+|.+++++|||.
T Consensus 236 ~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~l~~~~~~~~~~sR~~~a~ardg~ 315 (474)
T TIGR03813 236 LGTVLIFVLGTLAIAFIIPREDISLTQSLLVAFDNAFHWAGLSWLGPILAFALAIGVLAGVVTWVAGPSSGMLAVAKAGY 315 (474)
T ss_pred HHHHHHHHHHHHHHHhccCHhhccccccHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 9999999999999998888877654333 2444445556677777777888888999999999999999999999999
Q ss_pred CchhhhccCCCCCCCHHHHHHHHHHHHHHH--h---c----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcc
Q 044788 341 LPKVFGSRSSWFHTPWVGIFISTLIALTVS--Y---M----DFTNIISCVNFLYSLGMLLEFASFLWLRKKLPATKRPFR 411 (483)
Q Consensus 341 lP~~~~~~~~~~~~P~~ai~~~~i~~~~~~--~---~----~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 411 (483)
+|++|+|+|| +++|+++++++.+++.++. . . .++.+.++.+..+.+.|++.+++.+++|+|+|+.+||||
T Consensus 316 lP~~~~kv~k-~~~P~~a~~~~~~~~~~l~~~~~~~~s~~~~f~~l~~~~~~~~~i~y~~~~~a~i~lr~~~~~~~rpf~ 394 (474)
T TIGR03813 316 LPTFFQKTNK-NGMPIHIMFVQGIAVSVLSVLFVVMPSVQAAFQILSQLTVILYLVMYLLMFASAIYLRYSQPDRPRPYR 394 (474)
T ss_pred CCHHHhccCC-CCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCeE
Confidence 9999999996 8999999999987754432 1 1 267788888888999999999999999999988899999
Q ss_pred cCchhH
Q 044788 412 VPMEML 417 (483)
Q Consensus 412 ~~~~~~ 417 (483)
.|.++.
T Consensus 395 ~p~g~~ 400 (474)
T TIGR03813 395 IPGGLA 400 (474)
T ss_pred ecCCcc
Confidence 987644
No 27
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=100.00 E-value=1.5e-46 Score=383.45 Aligned_cols=397 Identities=15% Similarity=0.179 Sum_probs=295.4
Q ss_pred cccccccccccchhHHHhhhhhhcc--cccCc-hhhHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCChHHHh
Q 044788 34 STITVTSKKLSLLPLIFLIYFEVAG--GPYGE-EPAVGAAGPLFAILGFLIFPFIWSIPEALVTAELATTFPGNGGYVIW 110 (483)
Q Consensus 34 ~~~~~~~r~l~~~~~~~~~i~~~iG--g~~~~-~~~~~~~G~~~~i~~~~~~~~~~~~~~~l~~~el~~~~p~~Gg~y~~ 110 (483)
.++++++|+++.++.++++++.+.. +++.. +..+..+||.+.+++|++++++ .++.+++++||++++|++||.|+|
T Consensus 5 g~~~~l~r~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~Gp~~~i~~~~i~gi~-~l~~~~~~aEl~s~~P~~Gg~y~~ 83 (482)
T TIGR00907 5 GYKPELKREFSLWSIFGFAFSISNSWTGISTTYNYGLSSGGAMSIVWGWIIAGAG-SICIALSLAELSSAYPTSGGQYFW 83 (482)
T ss_pred CCcceeecccchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchhHHHHHHHHH-HHHHHHHHHHHHhhCCCCccHHHH
Confidence 4567799999999999999996622 44433 3456678997889999999998 999999999999999999999999
Q ss_pred HHHHhC----ChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcc----c--c-ccchHHHHHHHHHHHHHHHHHhhchh
Q 044788 111 AHHAFG----PFWGSLMGSWKFLSGVINLASYPILCIDYLKLVFP----I--F-ASGFSHYLAIFVVTLVLSFLNYTGLA 179 (483)
Q Consensus 111 ~~~~~g----~~~g~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~----~--~-~~~~~~~~~~~~~~~~~~~i~~~g~~ 179 (483)
++|.+| +..||++||.+++++....+......++++..... . . .+++....+.++++++++.+|++|.|
T Consensus 84 ~~~~~g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~in~~g~k 163 (482)
T TIGR00907 84 SAKLAPPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLTTPGREYIPTRWHIFGIMIGIHLIHALINSLPTK 163 (482)
T ss_pred HHHhcccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCchhhhhHHHHHHHHHHHHHhhHh
Confidence 999987 56699999999999999888888888888765431 1 1 23455566777778889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccc----ccc--ccccCCC--C-CCCch--HHHHHHHHHHhcchHhhhhhhhhc
Q 044788 180 IVGYTAVTLGVVSLIPFLFLTVIAIPKID----SIR--WISLGQN--G-VPKNW--RLFFNTLFWNLNFWDNASTLAGEV 248 (483)
Q Consensus 180 ~~~~~~~~~~~~~i~~~~~~~i~~~~~~~----~~~--~~~~~~~--~-~~~~~--~~~~~~~~~a~~G~e~~~~~~~E~ 248 (483)
..++++.+..+++++.++++.+..+...+ ..+ +.+...+ + .+.++ ...+....|+|.|+|.+++++||+
T Consensus 164 ~~~~~~~~~~~~~i~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~fsf~G~e~~~~~a~E~ 243 (482)
T TIGR00907 164 WLPRITSSAAYWSLLGFLTICITLLACKSPKFNDGKFVFTNFNNSTGGWKPGGFAFLLGLLNPAWSMTGYDGTAHMAEEI 243 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhhhheeeeCCCCCcCCCchhhhhhhhhhHHHhcCcchhhHHHHhc
Confidence 99999999888887776654444332221 111 1111111 1 12222 222334679999999999999999
Q ss_pred cCcCcchHHHHHHHHHHHHHHHHHHHHHHhhccC-CCCCCc--cccHHHHHHHHHc-chHHHHHHHHHHHHHHHHHHHHH
Q 044788 249 EQPQRTFPKALFSAGLLTCVAYLLPLLAATGAIP-LDQQNW--VDGYFAEVAEIIA-GKWLKICIEIGACLSIIGLYEAQ 324 (483)
Q Consensus 249 k~p~r~~p~a~~~~~~~~~~~y~l~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 324 (483)
|||+||+||+++.++.+..+++++..+......+ .++..+ .+.|+.+++.+.. .++...++....+++.+++.++.
T Consensus 244 knP~r~iP~Ai~~s~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 323 (482)
T TIGR00907 244 ENPEVVGPRAIIGAVAIGIVTGFCFNIVLFFSMGDIDSLISSTTGQPIAQIFYNALGNKAGAIFLLCLILVTSFFCAITC 323 (482)
T ss_pred CChhhhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhcCCCCChHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998777655544444333332 222222 2258888877654 44777778888888999999999
Q ss_pred hhhhhHHHHHhhhcCCCc--hhhhccCCCCCCCHHHHHHHHHHHHHHHhc------CHHHHHHHHHHHHHHHHHHHHHHH
Q 044788 325 LSNCAYQILGMTNLGLLP--KVFGSRSSWFHTPWVGIFISTLIALTVSYM------DFTNIISCVNFLYSLGMLLEFASF 396 (483)
Q Consensus 325 ~~~~sR~l~~~a~dg~lP--~~~~~~~~~~~~P~~ai~~~~i~~~~~~~~------~~~~l~~~~~~~~~~~~~~~~~~~ 396 (483)
+.+.+|++++|||||.+| ++|+|+|||+++|+++++++.+++.++.+. .++.+.+..+....+.|.+...+.
T Consensus 324 ~~~~sR~l~a~ardg~lP~~~~f~~v~~~~~~P~~ai~~~~~i~~~~~~~~~~~~~~f~~l~~~~~~~~~i~y~~~~~~~ 403 (482)
T TIGR00907 324 MTANSRMIYAFSRDGGLPFSPLWSRVNPRTQVPLNAVWLSAVWIILIGLLGLGSSTAFQAIFSVCTVALDVSYVIPIICK 403 (482)
T ss_pred HHHHHHHHHHHHhcCCcCchHhhceeCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 999999998899999999999888765532 488999999999999999988777
Q ss_pred HHHHHhCCCCCCCcccCchhHHHHHHHHHHHHHHHH
Q 044788 397 LWLRKKLPATKRPFRVPMEMLGLIFMCIIPSGFLVY 432 (483)
Q Consensus 397 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (483)
++.|| +++.+||||.+.........+++...+..+
T Consensus 404 l~~~~-~~~~~~~f~lg~~~~~~~~~~~~~~~~~~v 438 (482)
T TIGR00907 404 LAKGR-NTIAPGPFWLGKYGFFVNAVAVAWTVFSSV 438 (482)
T ss_pred HHhcC-CCCCCCCCcCCcchHHHHHHHHHHHHHHHh
Confidence 54333 345678999844333333334444444333
No 28
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=100.00 E-value=1.6e-45 Score=374.37 Aligned_cols=398 Identities=15% Similarity=0.151 Sum_probs=296.8
Q ss_pred hcccccccccccchhHHHhhhhhh-cc-cccCchhh-HhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCChHHH
Q 044788 33 QSTITVTSKKLSLLPLIFLIYFEV-AG-GPYGEEPA-VGAAGPLFAILGFLIFPFIWSIPEALVTAELATTFPGNGGYVI 109 (483)
Q Consensus 33 ~~~~~~~~r~l~~~~~~~~~i~~~-iG-g~~~~~~~-~~~~G~~~~i~~~~~~~~~~~~~~~l~~~el~~~~p~~Gg~y~ 109 (483)
..++++++|+++.++.++++++.+ ++ |++..++. +..+|| ..+++|++++++ .++.+++++|+++++|++||.|+
T Consensus 5 ~g~~~~L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp-~~~~~~li~~i~-~l~~als~aEL~s~~P~aGG~Y~ 82 (475)
T TIGR03428 5 FGYQPQLHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGP-AFFWTWPVVFVG-QLLVALNFAELAARYPISGAIYQ 82 (475)
T ss_pred cCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-HHHHHHHHHHHH-HHHHHHHHHHHHhhCCCCCCHHH
Confidence 345778999999999999999975 45 67666444 556899 789999999998 99999999999999999999999
Q ss_pred hHHHHhCChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcc---------ccc---cchHHHHHHHHHHHHHHHHHhhc
Q 044788 110 WAHHAFGPFWGSLMGSWKFLSGVINLASYPILCIDYLKLVFP---------IFA---SGFSHYLAIFVVTLVLSFLNYTG 177 (483)
Q Consensus 110 ~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~---~~~~~~~~~~~~~~~~~~i~~~g 177 (483)
|+++.+||.+||++||.+++++....+........++..+.+ ... ..++..++++++.++.+.+|++|
T Consensus 83 ~~~~~~g~~~gf~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g 162 (475)
T TIGR03428 83 WSRRMGGEVIGWFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQIIGEDPTLTSPSGAANAVLLGSVLLVLTTVINCIG 162 (475)
T ss_pred HHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCccccCCCchHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999887766666665555543321 110 11345677777888899999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhccccccc---ccccCCCCCCCch-HHH---HHHHHHHhcchHhhhhhhhhccC
Q 044788 178 LAIVGYTAVTLGVVSLIPFLFLTVIAIPKIDSIR---WISLGQNGVPKNW-RLF---FNTLFWNLNFWDNASTLAGEVEQ 250 (483)
Q Consensus 178 ~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~-~~~---~~~~~~a~~G~e~~~~~~~E~k~ 250 (483)
+|..++++.+..+++++.++++++..+.+.+.+. +... ..+...++ ..+ ....+|+|.|+|.+++++||+||
T Consensus 163 ~k~~~~i~~~~~~~~i~~l~~iii~~~~~~~~~~~~~f~~~-~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~aeE~kn 241 (475)
T TIGR03428 163 VEWMSRVNTIGVTCEIVGVLAVIGVLFTHAQRGPGVVFDTS-VTGASPGYYGAFLVSGLMAAYVMVGFGSAGELSEETKN 241 (475)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeecC-CCCCCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhcC
Confidence 9999999999999888776666655543332211 1111 11111222 222 23457999999999999999999
Q ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHhhccCC---CCCCccccHHHHHHHHH-cchHHHHHHHHHHHHHHHHHHHHHhh
Q 044788 251 PQRTFPKALFSAGLLTCVAYLLPLLAATGAIPL---DQQNWVDGYFAEVAEII-AGKWLKICIEIGACLSIIGLYEAQLS 326 (483)
Q Consensus 251 p~r~~p~a~~~~~~~~~~~y~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (483)
|+||+||+++.++.+..++|.+..+......|+ ++.+..+.|. +..+. ++++. ..+....+++.+++.++.+.
T Consensus 242 P~r~iPrai~~s~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~g~~~~-~~~~~~~~i~~~~~~~~~~~ 318 (475)
T TIGR03428 242 PRRVAPRTILTALSVSALGGGLMILGALMAAPSLTDGRLAAEGLPY--VLSAVLDSPWG-TVLLVDVAIAILVCTLAIQT 318 (475)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHhhcCCCchHH--HHHHHhCcHhH-HHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999888777777666655443 1222223343 33344 33443 44555667788899999999
Q ss_pred hhhHHHHHhhhcCCCc--hhhhccCCCCCCCHHHHHHHHHHHHHHHhc------CHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044788 327 NCAYQILGMTNLGLLP--KVFGSRSSWFHTPWVGIFISTLIALTVSYM------DFTNIISCVNFLYSLGMLLEFASFLW 398 (483)
Q Consensus 327 ~~sR~l~~~a~dg~lP--~~~~~~~~~~~~P~~ai~~~~i~~~~~~~~------~~~~l~~~~~~~~~~~~~~~~~~~~~ 398 (483)
+.+|+++++||||.+| ++|+|+|||+++|++++++..+++.++.+. .|+.+.++.+....+.|.+..++.+.
T Consensus 319 ~~sR~~~a~Ardg~lP~s~~~~~v~~r~~tP~~A~~l~~~i~~~~~~i~~~~~~af~~l~s~~~~~~~~~Y~~~~~~~l~ 398 (475)
T TIGR03428 319 AGSRLMFSMARDGKLPASAQLSRVHPRTGTPILPSIVIGVLCIGILLINVGNSALFATLASVCIVLIYLAYLLVTVPLLL 398 (475)
T ss_pred HHHHHHHHHHhcCCCcchHHhcccCCCCCCcHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 489999998999999999999888766532 37889999999999999998887776
Q ss_pred HHHhC--C----CCCCCcccCchhHHHHHHHHHHHHHHHHHHHh
Q 044788 399 LRKKL--P----ATKRPFRVPMEMLGLIFMCIIPSGFLVYVMVV 436 (483)
Q Consensus 399 ~r~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (483)
.|+|. | ..++||+++.+.....+.+++...+..+....
T Consensus 399 ~~~~~~~~~~~~~~~g~f~lg~~g~~vn~~a~~~~~~~~v~~~~ 442 (475)
T TIGR03428 399 RRLRGWPRGDQTDPAGLFSLGRWGLPVNILAVVYGALMVVNLSW 442 (475)
T ss_pred HHHhccCCccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHC
Confidence 65542 1 24668888755555566666655555554443
No 29
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=100.00 E-value=1.7e-45 Score=374.67 Aligned_cols=373 Identities=20% Similarity=0.272 Sum_probs=276.4
Q ss_pred ccccccchhHHHhhhhhhcccccCchhhHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-CCChHHHhHHHHhCC
Q 044788 39 TSKKLSLLPLIFLIYFEVAGGPYGEEPAVGAAGPLFAILGFLIFPFIWSIPEALVTAELATTFP-GNGGYVIWAHHAFGP 117 (483)
Q Consensus 39 ~~r~l~~~~~~~~~i~~~iGg~~~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~l~~~el~~~~p-~~Gg~y~~~~~~~g~ 117 (483)
.+|+++.++++.+.++.+.+ ++..|. .+..|. ..+.-++++++++.++.+++++||++++| ++||.|.|+++++||
T Consensus 2 ~~~~l~~~~~~~~~~~~v~~-~~~~~~-~a~~G~-~~i~~~i~~~l~~~lp~al~~AELas~~p~~~GG~y~wv~~a~G~ 78 (507)
T TIGR00910 2 KAKKLSLFGFFAITASMVLA-VYEYPT-FATSGF-HLVFFLLLGGILWFIPVALCAAEMATVDGWEEGGIFAWVSNTLGE 78 (507)
T ss_pred CCcEeeHHHHHHHHHHHHHH-HHhhHH-HHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCeeeehhhccCc
Confidence 35679999999999988754 455553 555666 55555777778778999999999999997 899999999999999
Q ss_pred hhHHHHHHHHHHHhhhhHHHHHH---HHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHH
Q 044788 118 FWGSLMGSWKFLSGVINLASYPI---LCIDYLKLVFPIF-ASGFSHYLAIFVVTLVLSFLNYTGLAIVGYTAVTLGVVSL 193 (483)
Q Consensus 118 ~~g~~~g~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i 193 (483)
++||.++|.+|+......+.... ....|... .+.. .+++...+..++++++++++|++|.|..++++.+..+..+
T Consensus 79 ~~Gf~~~~~~W~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~~~~~~~i~~l~i~~~~t~~n~~G~k~~~~i~~i~~~~~~ 157 (507)
T TIGR00910 79 RFGFAAIFFGWFQIAIGFIPMIYFILGALSYILK-FPALNEDPIIKFIAALIIFWALAFSQFGGTKRTAKIAKAGFFAGI 157 (507)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CchhccCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 99999999999877654333222 22233322 2222 2345566666777888999999999999999877654433
Q ss_pred -HHHHHHHHHHh---cccccccc----cccCCCCCCCchHHHHHHHHHHhcchHhhhhhhhhccCcCcchHHHHHHHHHH
Q 044788 194 -IPFLFLTVIAI---PKIDSIRW----ISLGQNGVPKNWRLFFNTLFWNLNFWDNASTLAGEVEQPQRTFPKALFSAGLL 265 (483)
Q Consensus 194 -~~~~~~~i~~~---~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~p~r~~p~a~~~~~~~ 265 (483)
+.++++++.+. ...++... .+..++....+....+...+|+|.|+|.+++++||+|||+||+||+++.++++
T Consensus 158 ~i~~~ili~l~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~faf~G~E~~a~~a~E~knP~r~~PrAi~~~~i~ 237 (507)
T TIGR00910 158 LIPAFILFALAAAYFHGGAPIAIEIDSHAFFPDFSKVGTLVVFVAFIGAYMGVEASASHINELENPGRDYPLAMILLMIA 237 (507)
T ss_pred HHHHHHHHHHHHHHHhCCCccccCCcHHhcCCCcccccHHHHHHHHHHHHhcHHHHHHHHHHccCCcccccHHHHHHHHH
Confidence 32332222221 11221111 11111111122334455678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCCCccccH---HHHHHHHHcc--hHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCC
Q 044788 266 TCVAYLLPLLAATGAIPLDQQNWVDGY---FAEVAEIIAG--KWLKICIEIGACLSIIGLYEAQLSNCAYQILGMTNLGL 340 (483)
Q Consensus 266 ~~~~y~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~ 340 (483)
+.++|.+..+......|+++....+.+ +..+.....+ ++...++.+..+++.+++.++++.+.+|.++++||||.
T Consensus 238 ~~~l~~l~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~l~~~~~~i~~~sR~l~~~ardg~ 317 (507)
T TIGR00910 238 AICLDAIGGFSIAAVIPGKEINLSAGVIQTFQTLILHFAHEIEWLVKVIAALIAFGVLAEIASWIVGPSRGMFAAAQKGL 317 (507)
T ss_pred HHHHHHHHHHHHheecChhhcccchHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 999999988888788887776544332 3333333332 45666777788888999999999999999999999999
Q ss_pred CchhhhccCCCCCCCHHHHHHHHHHHHHHHh--c--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCc
Q 044788 341 LPKVFGSRSSWFHTPWVGIFISTLIALTVSY--M--------DFTNIISCVNFLYSLGMLLEFASFLWLRKKLPATKRPF 410 (483)
Q Consensus 341 lP~~~~~~~~~~~~P~~ai~~~~i~~~~~~~--~--------~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 410 (483)
+|++|+|+|| +++|+++++++.+++.++.+ . .+..+.++.+..+.+.|++.+++.+++|+|+|+.+|||
T Consensus 318 lP~~~~k~nk-~~~P~~a~~~~~~i~~l~~~~~~~~~~~~~~~f~~l~~~~~~~~~i~Y~l~~~a~i~lr~k~p~~~rpf 396 (507)
T TIGR00910 318 LPAAFAKMNK-HEVPVPLVIIQGIITSIAGAILTFGGGGNNLSFLIAIALTVVIYLCAYFLFFIGYFVLILKHPDLKRTF 396 (507)
T ss_pred cCHHHHhhCc-CCCcHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCe
Confidence 9999999996 89999999999888866431 1 24556677888999999999999999999999999999
Q ss_pred ccCchh
Q 044788 411 RVPMEM 416 (483)
Q Consensus 411 ~~~~~~ 416 (483)
|.|+.+
T Consensus 397 ~~pg~~ 402 (507)
T TIGR00910 397 NIPGGI 402 (507)
T ss_pred EecCCc
Confidence 998764
No 30
>TIGR00930 2a30 K-Cl cotransporter.
Probab=100.00 E-value=2.8e-45 Score=391.24 Aligned_cols=415 Identities=15% Similarity=0.175 Sum_probs=316.5
Q ss_pred cccccccccchhHHHhh-hhhhcc-cccCchhhH-hhhChHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CCCCChHHHhH
Q 044788 36 ITVTSKKLSLLPLIFLI-YFEVAG-GPYGEEPAV-GAAGPLFAILGFLIFPFIWSIPEALVTAELATT-FPGNGGYVIWA 111 (483)
Q Consensus 36 ~~~~~r~l~~~~~~~~~-i~~~iG-g~~~~~~~~-~~~G~~~~i~~~~~~~~~~~~~~~l~~~el~~~-~p~~Gg~y~~~ 111 (483)
++..++++|+++.+++- +++++| ++|..++.+ .++|....++.|++++++ +++++++|+|++++ +|++||.|.|+
T Consensus 71 ~~~~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~v-tlltaLS~seiaTng~p~aGG~Y~yi 149 (953)
T TIGR00930 71 PPAGAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCV-TTITGLSMSAIATNGVVKGGGAYYLI 149 (953)
T ss_pred CCCCCcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCCccHHHHHH
Confidence 34567899999999987 999999 777665554 568876678889999998 99999999999998 99999999999
Q ss_pred HHHhCChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcccccc-----c-hHHHHHHHHHHHHHHHHHhhchhHHHHHH
Q 044788 112 HHAFGPFWGSLMGSWKFLSGVINLASYPILCIDYLKLVFPIFAS-----G-FSHYLAIFVVTLVLSFLNYTGLAIVGYTA 185 (483)
Q Consensus 112 ~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~-~~~~~~~~~~~~~~~~i~~~g~~~~~~~~ 185 (483)
+|++||.+|+.+||.+++++....++++.++++|+..+++..+. + ....+++.+++++++++|++|+|..+++|
T Consensus 150 sralGp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~~~~~~~~~~~iia~i~l~ll~~In~~Gvk~~ak~q 229 (953)
T TIGR00930 150 SRSLGPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSKIMVDPINDIRIYGTVTVVVLLGISFAGMEWENKAQ 229 (953)
T ss_pred HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCccccchHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999999999999999999999999999999998753211 1 12356777888889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccc-----------cccccccCCCC---CCCchHHHHHHHHHHhcchHhhhhhhhhccCc
Q 044788 186 VTLGVVSLIPFLFLTVIAIPKID-----------SIRWISLGQNG---VPKNWRLFFNTLFWNLNFWDNASTLAGEVEQP 251 (483)
Q Consensus 186 ~~~~~~~i~~~~~~~i~~~~~~~-----------~~~~~~~~~~~---~~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~p 251 (483)
.++++++++.++.+++.++.... .+.+.....++ ...++...+...+++|+|+|+.++++||+|||
T Consensus 230 ~vl~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan~sgElKnP 309 (953)
T TIGR00930 230 VLFLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGANISGDLKDP 309 (953)
T ss_pred HHHHHHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhccCh
Confidence 99999988887776655442111 01111110011 01124455556678999999999999999999
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCccccHH------------------HHH----HHH-HcchHHHHH
Q 044788 252 QRTFPKALFSAGLLTCVAYLLPLLAATGAIPLDQQNWVDGYF------------------AEV----AEI-IAGKWLKIC 308 (483)
Q Consensus 252 ~r~~p~a~~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~------------------~~~----~~~-~~~~~~~~~ 308 (483)
+|++|||++.++.+++++|++..+......+.+.....+... ... ... ........+
T Consensus 310 ~r~IPratl~ai~i~~vlYllv~~~~~~~~~~d~~~~~~~~l~~~~~g~~~f~~~~~~p~~~gL~~~~~~~~~~~~~~~l 389 (953)
T TIGR00930 310 QKAIPKGTLLAILTTTVVYLGSVVLFGACVVRDATGDKNDTLVTNCTSAACFSECAHNTCSYGLMNNLQVMSLVSPFPPL 389 (953)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHccccHhhhcccchhhhcccccchhhhhhcccchhhhhcchHHHHhhhhhhHHH
Confidence 999999999999999999999998777776654322111110 000 000 111224577
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCCCc--hhhhccCCCCCCCHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHH
Q 044788 309 IEIGACLSIIGLYEAQLSNCAYQILGMTNLGLLP--KVFGSRSSWFHTPWVGIFISTLIALTVS-YMDFTNIISCVNFLY 385 (483)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP--~~~~~~~~~~~~P~~ai~~~~i~~~~~~-~~~~~~l~~~~~~~~ 385 (483)
+.++++++++++.++.+.+++|++++|||||.+| ++|+|+|+|+++|++++++.+++++++. +.+++.+..+.+..+
T Consensus 390 I~ig~~~stlss~la~l~~asRvl~AmArDg~lP~l~~fakv~~k~~tP~~Alllt~iIa~l~ili~~l~~ia~lis~~f 469 (953)
T TIGR00930 390 ITAGIFSATLSSALASLVSAPRLFQALCKDNIYPFLQFFGKGYGKNGEPLRAYLLTAFIAEGFILIAELNTIAPIISNFF 469 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhcccCCCCCCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 8888999999999999999999999999999999 8999999989999999999999998776 567899999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCC-cccCchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 044788 386 SLGMLLEFASFLWLRKKLPATKRP-FRVPMEMLGLIFMCIIPSGFLVYVMVVATKMVCFVSALLTFFGIFLYFFI 459 (483)
Q Consensus 386 ~~~~~~~~~~~~~~r~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 459 (483)
++.|.+++++++.+|.+++...|| ||. ..+ ++++++++.|++.++..+|.... +.+++++.+|.+.
T Consensus 470 Ll~Y~lvnla~~~l~~~~~p~~RP~fk~-~~~----~~sllG~l~c~~lmf~i~w~~al---i~~~i~~~ly~~~ 536 (953)
T TIGR00930 470 LASYALINFSCFHASLLRSPGWRPRFKY-YHW----WLSLLGASLCCAIMFLISWWAAL---VAMVIALFLYKYV 536 (953)
T ss_pred HHHHHHHHHHHHHHhhccCCCCCCcccc-chH----HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHh
Confidence 999999999999988665433343 454 222 34455566666666666664433 3334444455444
No 31
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=2.7e-44 Score=367.07 Aligned_cols=381 Identities=27% Similarity=0.386 Sum_probs=321.4
Q ss_pred ccccccccccchh-HHHhhhhhhcc-cccCchhhHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCChHHHhHH
Q 044788 35 TITVTSKKLSLLP-LIFLIYFEVAG-GPYGEEPAVGAAGPLFAILGFLIFPFIWSIPEALVTAELATTFPGNGGYVIWAH 112 (483)
Q Consensus 35 ~~~~~~r~l~~~~-~~~~~i~~~iG-g~~~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~l~~~el~~~~p~~Gg~y~~~~ 112 (483)
.+++++|+++.++ ...+.++.++| |.+..+......++ ...++|++++++ ..+.+++++|+++++|++||.|.|++
T Consensus 6 ~~~~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~~-~~~~~~li~~~~-~~~~a~~~~el~~~~p~~GG~y~~~~ 83 (466)
T COG0531 6 MSSELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLAP-AAILAWLIAGII-ILFLALSYAELSSAIPSAGGAYAYAK 83 (466)
T ss_pred cchhcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhch-HHHHHHHHHHHH-HHHHHHHHHHHHhcCCCCCCeeeehh
Confidence 3557788999999 88899998888 77877776665444 444448888877 66679999999999999999999999
Q ss_pred HHhCChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhccc---cccc-hHHHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Q 044788 113 HAFGPFWGSLMGSWKFLSGVINLASYPILCIDYLKLVFPI---FASG-FSHYLAIFVVTLVLSFLNYTGLAIVGYTAVTL 188 (483)
Q Consensus 113 ~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~-~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~ 188 (483)
+.+||+.|+.++|.+++.+....+......+.++..+++. ...+ +....+++++.++..++|++|+|..++++.+.
T Consensus 84 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~G~~~~~~~~~~~ 163 (466)
T COG0531 84 RALGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPGLLSIGPLLIILIALALIALLTLLNLRGIKASAKINSII 163 (466)
T ss_pred hhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988874 2222 67788899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccccccccccCCCC-CCCc---hHHHHHHHHHHhcchHhhhhhhhhccCcCcchHHHHHHHHH
Q 044788 189 GVVSLIPFLFLTVIAIPKIDSIRWISLGQNG-VPKN---WRLFFNTLFWNLNFWDNASTLAGEVEQPQRTFPKALFSAGL 264 (483)
Q Consensus 189 ~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~a~~G~e~~~~~~~E~k~p~r~~p~a~~~~~~ 264 (483)
.+++++.++++.+..+.+.+..+.+...... .... ....+...+|+|.|+|.+++++||+|||+|++||+++.+.+
T Consensus 164 ~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~knp~r~ip~aii~~~~ 243 (466)
T COG0531 164 TILKIIILLIFIILGLFAFGFSNGNLFAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNPKRTIPRAIILSLL 243 (466)
T ss_pred HHHHHHHHHHHHHHHHHHhCccccccCCCcccccchHHHHHHHHHHHHHHhhcHHHHHHHHHHhcCccccccHHHHHHHH
Confidence 9999999988888877665544322222110 0112 23334557899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCc-cc-cHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCCCc
Q 044788 265 LTCVAYLLPLLAATGAIPLDQQNW-VD-GYFAEVAEIIAGKWLKICIEIGACLSIIGLYEAQLSNCAYQILGMTNLGLLP 342 (483)
Q Consensus 265 ~~~~~y~l~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP 342 (483)
.++++|++.........|+++... .+ .|..+..+...+.+...++.+..+++.+++.++...+.+|.+++|+|||.+|
T Consensus 244 ~~~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~~~~~ardg~lP 323 (466)
T COG0531 244 IVLILYILGALVIVGVLPAGDLAASAPSAPLALAALFGGGNWGAIIIAILALLSLFGSLLAWILAVSRVLYAMARDGLLP 323 (466)
T ss_pred HHHHHHHHHHHHHHhCccHHHHhccCCCccHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 999999999999999988753321 22 6888888888888899999999999999999999999999999999999999
Q ss_pred hhhhccCCCCCCCHHHHHHHHHHHH-HHHhc-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccCchh
Q 044788 343 KVFGSRSSWFHTPWVGIFISTLIAL-TVSYM-----DFTNIISCVNFLYSLGMLLEFASFLWLRKKLPATKRPFRVPMEM 416 (483)
Q Consensus 343 ~~~~~~~~~~~~P~~ai~~~~i~~~-~~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 416 (483)
++|+|+|+|+++|++++++..+++. +.... .++.+.+..+....+.|.+..++..++|+|+++.+|++|.+...
T Consensus 324 ~~~~~~~~~~~~P~~a~~~~~ii~~~l~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (466)
T COG0531 324 KFFAKVNPKGRTPVIALILTGIISLILLLLFPLSSIAFNALVSLASVAFLIAYLLVALALLVLRRKKPDLKRPFRLPLAP 403 (466)
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccccc
Confidence 9999999988999999999999998 33332 36899999999999999999999999999988888888887664
Q ss_pred H
Q 044788 417 L 417 (483)
Q Consensus 417 ~ 417 (483)
.
T Consensus 404 ~ 404 (466)
T COG0531 404 L 404 (466)
T ss_pred h
Confidence 3
No 32
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=2.2e-45 Score=368.36 Aligned_cols=384 Identities=20% Similarity=0.260 Sum_probs=306.8
Q ss_pred cccccccccchhHHHhhhhhhcc-cccCc-hhhHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-CChHHHhHH
Q 044788 36 ITVTSKKLSLLPLIFLIYFEVAG-GPYGE-EPAVGAAGPLFAILGFLIFPFIWSIPEALVTAELATTFPG-NGGYVIWAH 112 (483)
Q Consensus 36 ~~~~~r~l~~~~~~~~~i~~~iG-g~~~~-~~~~~~~G~~~~i~~~~~~~~~~~~~~~l~~~el~~~~p~-~Gg~y~~~~ 112 (483)
++++||+|+.+|+.++++|..+| |.|.. +.....+||.+.+++++++++. +++.++|++|++.++|+ +||.|.|++
T Consensus 25 ~~~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~-~~~~~~~~~E~~~~~P~~aGs~~~ya~ 103 (554)
T KOG1286|consen 25 ETELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIA-ALLSALCLGEFAVRFPVSAGSFYTYAY 103 (554)
T ss_pred cchhhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHH-HHHHHHHHHHHheecccccccceeeee
Confidence 36899999999999999999999 88754 5666778888999999999998 99999999999999999 599999999
Q ss_pred HHhCChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhc---------cccc-cchHHHHHHHHHHHH-HHHHHhhchhHH
Q 044788 113 HAFGPFWGSLMGSWKFLSGVINLASYPILCIDYLKLVF---------PIFA-SGFSHYLAIFVVTLV-LSFLNYTGLAIV 181 (483)
Q Consensus 113 ~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~---------~~~~-~~~~~~~~~~~~~~~-~~~i~~~g~~~~ 181 (483)
|..||.+||.+||.+++.|....++.+.+.+.+++.+. +..+ ..+.....++++.+. .....+.+.|..
T Consensus 104 ~~i~e~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~~~~~~~~~~~~~~~~~~~~~fla~~v~in~~gv~~~ge~ef~ 183 (554)
T KOG1286|consen 104 RFVGESLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWTGASLIGILVDTVNPGGWIPDFLAFILIINLFGVLAYGEVEFS 183 (554)
T ss_pred eeeCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccccccccCCCCCccHHHHHHHHHHHHHHHHhhccceeeh
Confidence 99999999999999999999999999999999999985 3222 122222233332222 233333667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccccccc---CCCC--CCC---chHHHHHHHHHHhcchHhhhhhhhhccCcCc
Q 044788 182 GYTAVTLGVVSLIPFLFLTVIAIPKIDSIRWISL---GQNG--VPK---NWRLFFNTLFWNLNFWDNASTLAGEVEQPQR 253 (483)
Q Consensus 182 ~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~---~~~~--~~~---~~~~~~~~~~~a~~G~e~~~~~~~E~k~p~r 253 (483)
..++.+++.+.++.+.+++..+..+.|+.++... ..++ .+. ++...+...+|+|.|+|.++..+||.|||+|
T Consensus 184 ~~~~kvl~~v~~~Il~iVi~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E~kNP~k 263 (554)
T KOG1286|consen 184 LAFNKILTAVGFIILAIVIIAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTAEEAKNPRK 263 (554)
T ss_pred HHHHHHHHHHHHHHhheeeecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHHhccCCcc
Confidence 7888888888887777777777777666555431 1111 122 3344456678999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhccCCCC--CCccc---cHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhh
Q 044788 254 TFPKALFSAGLLTCVAYLLPLLAATGAIPLDQ--QNWVD---GYFAEVAEIIAGKWLKICIEIGACLSIIGLYEAQLSNC 328 (483)
Q Consensus 254 ~~p~a~~~~~~~~~~~y~l~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (483)
++|+|+..++..+.++|++..+.+...+|+++ +..+. +|+....+..+-+....+++++++++..++.++.+++.
T Consensus 264 ~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF~iai~~~~~k~~~~ivna~iL~~~~s~~n~~~y~~ 343 (554)
T KOG1286|consen 264 AIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPFVIAIGNAGAKYLPHIVNAGILIGLLSSLNSSLYAG 343 (554)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccHHHHHHhccCccccchhhhHHHHHHHHHHHHHHhHHh
Confidence 99999999999999999999999999999876 44322 34443333344444556999999999999999999999
Q ss_pred hHHHHHhhhcCCCchhhhccCCCCCCCHHHHHHHHHHHHHHHh-cC------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044788 329 AYQILGMTNLGLLPKVFGSRSSWFHTPWVGIFISTLIALTVSY-MD------FTNIISCVNFLYSLGMLLEFASFLWLRK 401 (483)
Q Consensus 329 sR~l~~~a~dg~lP~~~~~~~~~~~~P~~ai~~~~i~~~~~~~-~~------~~~l~~~~~~~~~~~~~~~~~~~~~~r~ 401 (483)
+|.+++||+||.+|++|+++||| ++|++++++..+++.+..+ .+ |+++.++.+++.++.|.+.+++.+++|+
T Consensus 344 sR~l~amA~~G~~Pk~f~~v~~~-g~P~~a~~v~~~~~~l~~~~~~~~~~~~f~~L~~~~si~tl~~w~~i~~~~i~~R~ 422 (554)
T KOG1286|consen 344 SRVLYALAKDGLAPKFFARVDRR-GVPLVAVLVSGLFGALAALNFSLGAATVFNWLVNLSSIGTLFAWTLVALSHLRFRY 422 (554)
T ss_pred HHHHHHHHhcCCcchHHhhcCCC-CCchhHHHHHHHHHHHHHHHhccccchHHHHHHHHHhHHHHHHHHHHHHHHeeeee
Confidence 99999999999999999999996 9999999999999887763 22 6999999999999999999999999887
Q ss_pred hCC-----CCCCCcccCchhHHHHH
Q 044788 402 KLP-----ATKRPFRVPMEMLGLIF 421 (483)
Q Consensus 402 ~~~-----~~~~~~~~~~~~~~~~~ 421 (483)
..+ ..+.+||.+..++....
T Consensus 423 a~~~q~~~~~~~~~~s~~~~~gs~~ 447 (554)
T KOG1286|consen 423 AMKVQGRSLDELPYKSPTGPYGSYY 447 (554)
T ss_pred cccccCCCcccccccCCCCCchhHH
Confidence 632 12446777655444333
No 33
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=4.6e-45 Score=351.65 Aligned_cols=424 Identities=16% Similarity=0.260 Sum_probs=326.2
Q ss_pred hhcccccccccccchhHHHhhhhhhcc---cc-cCchhhHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCChH
Q 044788 32 QQSTITVTSKKLSLLPLIFLIYFEVAG---GP-YGEEPAVGAAGPLFAILGFLIFPFIWSIPEALVTAELATTFPGNGGY 107 (483)
Q Consensus 32 ~~~~~~~~~r~l~~~~~~~~~i~~~iG---g~-~~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~l~~~el~~~~p~~Gg~ 107 (483)
+...++++||++++++.++.+++.+ | |+ -.+...+..+||...+|+|++++++ .++++++++|+++++|++||.
T Consensus 39 ~lgYkqef~R~fs~~s~fg~sFs~~-g~~~~i~tsm~~gl~~gG~~~~vwgwlIa~~~-~i~va~slaEl~Sa~PtsGgL 116 (550)
T KOG1289|consen 39 ELGYKQELKREFSLFSIFGISFSLM-GLLPGIATSMAYGLGSGGPPTLVWGWLIAGFF-SICVALSLAELCSAMPTSGGL 116 (550)
T ss_pred HcCCchhhhhhhhHHHHHHHHHHHh-cchhhhhhheeeccccCChHHHHHHHHHHHHH-HHHHHhHHHHHHhhCCCCCcH
Confidence 3456899999999999999999976 5 22 2334445557887999999999998 999999999999999999999
Q ss_pred HHhHHHHhC----ChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhccccc-----cchHHHHHHHHHHHHHHHHHhhch
Q 044788 108 VIWAHHAFG----PFWGSLMGSWKFLSGVINLASYPILCIDYLKLVFPIFA-----SGFSHYLAIFVVTLVLSFLNYTGL 178 (483)
Q Consensus 108 y~~~~~~~g----~~~g~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~g~ 178 (483)
|.|+...-+ |..+|++||...+++....++...+.++.+.......+ +.++.+.+..++..+..++|+.+.
T Consensus 117 y~waa~lap~k~~~~~sw~~Gw~~~~g~~~~~aSi~~S~A~~i~~~v~l~np~y~~~~~~~~~v~~ai~~v~~lln~~p~ 196 (550)
T KOG1289|consen 117 YFWAAVLAPPKYGPFASWVTGWLNYLGQATGVASITYSLAQLILGAVSLTNPNYEPTNYHQFGVFEAILFVHGLLNSLPT 196 (550)
T ss_pred HHHHHHhcCcchhhHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhhcCCCCcccceEeehHHHHHHHHHHHHhcCCc
Confidence 999988655 56689999999999999999999999998887753322 456778888889999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcccccc------c--cccc-CCCC-CCCchHHH--HHHHHHHhcchHhhhhhhh
Q 044788 179 AIVGYTAVTLGVVSLIPFLFLTVIAIPKIDSI------R--WISL-GQNG-VPKNWRLF--FNTLFWNLNFWDNASTLAG 246 (483)
Q Consensus 179 ~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~------~--~~~~-~~~~-~~~~~~~~--~~~~~~a~~G~e~~~~~~~ 246 (483)
|...+++.......++.+++..+......+.. . +..+ +..+ .+.+|.-. +....|.++|+|+.+|++|
T Consensus 197 r~l~~I~~~~~~~~ll~~~i~~I~lla~~~~k~gFns~~~iF~~f~N~sgw~~~G~afil~f~~~~wt~sGyDa~~H~aE 276 (550)
T KOG1289|consen 197 RVLARINSVSVYLNLLFLVILMITLLAASSKKTGFNSGSFIFGKFNNYSGWKNNGWAFILGFFNPAWTMSGYDAAAHMAE 276 (550)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCceeeecccccCCCCcchHHHHHhhccceeEEeccCchHHHHH
Confidence 99999999999999888777766655432221 1 1111 1111 12333322 3345799999999999999
Q ss_pred hccCcCcchHHHHHHHHHHHHHHHHHHHHHHhhccCCCC--C--CccccHHHHHHHHHcchHHHHHHHHHHHHHHHHHHH
Q 044788 247 EVEQPQRTFPKALFSAGLLTCVAYLLPLLAATGAIPLDQ--Q--NWVDGYFAEVAEIIAGKWLKICIEIGACLSIIGLYE 322 (483)
Q Consensus 247 E~k~p~r~~p~a~~~~~~~~~~~y~l~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (483)
|+|||+|+.||+|+.+..+..++-....+.+....++|. + +....|+.+.+.+..|+-....+....+++.+....
T Consensus 277 E~~nAsk~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~~~v~ns~~g~p~~~i~~~~lg~k~~v~~~~l~ii~~f~~gi 356 (550)
T KOG1289|consen 277 ETKNASKAAPRGIISSIAIGFILGWIIIIGIAYTIPDDLDAVLNSSLGQPIVQIYYQALGKKGAVFLLSLIIIALFFMGI 356 (550)
T ss_pred HhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHhcCCCCChHHHHHHHhcCCCceEehhHHHHHHHHHhhH
Confidence 999999999999999999999998888888888887543 1 233579999999888777777777888888999999
Q ss_pred HHhhhhhHHHHHhhhcCCCc--hhhhccCCCCCCCHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHHHHHHHHHHH
Q 044788 323 AQLSNCAYQILGMTNLGLLP--KVFGSRSSWFHTPWVGIFISTLIALTVSY------MDFTNIISCVNFLYSLGMLLEFA 394 (483)
Q Consensus 323 ~~~~~~sR~l~~~a~dg~lP--~~~~~~~~~~~~P~~ai~~~~i~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~ 394 (483)
+.+.+.||..|+.+|||.|| ++++|+||++++|.+|+++..+.++++.+ ..++.+.++..+...+.|.+..+
T Consensus 357 ~s~~a~SR~v~afaRDg~LP~S~~~~~v~~~t~~P~nAv~l~~i~s~llgll~L~s~~Af~Alfs~a~i~l~~Ay~iP~~ 436 (550)
T KOG1289|consen 357 SSLTASSRLVYAFARDGGLPFSKYLAKVNPQTKVPLNAVLLSCIISILLGLLILASATAFNALFSAAAIALFIAYAIPIF 436 (550)
T ss_pred HHHHHHHHHHhhhhccCCCCCcceeeecCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999 89999999779999999999999887763 24899999999999999999998
Q ss_pred HHHHHHHhCCCCCCCcccCch-hHHHHHHHHHHHHHHHHHHHhhh--------h-HHHHHHHHHHHHHHHHHHHH
Q 044788 395 SFLWLRKKLPATKRPFRVPME-MLGLIFMCIIPSGFLVYVMVVAT--------K-MVCFVSALLTFFGIFLYFFI 459 (483)
Q Consensus 395 ~~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--------~-~~~~~~~~~~~~g~~~~~~~ 459 (483)
+.+..+|+ .-.++||..... .+.. +++++...++......+. . .+..+..+.++..++.|+..
T Consensus 437 ~rlf~~r~-~f~~gp~~lGk~s~p~~-~i~v~w~lf~~vil~fP~~~pvT~~~MNya~VV~gg~~lf~li~~~~~ 509 (550)
T KOG1289|consen 437 CRLFFGRD-DFRPGPFNLGKFSKPIG-IIAVLWVLFMIVILCFPSVYPVTADNMNYACVVYGGVMLFCLIYYFVS 509 (550)
T ss_pred hheeeccc-ccCCCCccccccccchH-HHHHHHHHHHHHHHhCCcccCCCcccCceEEEeehhhhhhhhheeeee
Confidence 88887776 333556655322 2222 223444444444433321 1 11244445555666666554
No 34
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=100.00 E-value=4.8e-44 Score=360.52 Aligned_cols=361 Identities=29% Similarity=0.497 Sum_probs=304.9
Q ss_pred ccchhHHHhhhhhhcc-cccCchhhHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCChHHHhHHHHhCChhHH
Q 044788 43 LSLLPLIFLIYFEVAG-GPYGEEPAVGAAGPLFAILGFLIFPFIWSIPEALVTAELATTFPGNGGYVIWAHHAFGPFWGS 121 (483)
Q Consensus 43 l~~~~~~~~~i~~~iG-g~~~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~l~~~el~~~~p~~Gg~y~~~~~~~g~~~g~ 121 (483)
+|+++..+++++.++| |.+..+ ....+|+ ..++.++++++++.++.+++|+|+++++|++||.|.|+++.+||++|+
T Consensus 1 l~~~~~~~l~~~~~~g~gi~~~~-~~~~~G~-~~~~~~~i~~~~~~l~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~ 78 (426)
T PF13520_consen 1 LGLFSAIALVIGSIIGSGIFFSP-AAASAGP-SAILAWIIAALLFFLPIALSYAELSSAYPSAGGIYVWVSRAFGPFWGF 78 (426)
T ss_dssp B-HHHHHHHHHHCHHTTTTTTHH-HHTCTGC-HHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSTTHHHHHHHHH-HHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH-HHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCeeeehhhhcccccchh
Confidence 5789999999999999 666666 5666888 577778888887348999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhcc-cc-ccchHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHH-HHHHH
Q 044788 122 LMGSWKFLSGVINLASYPILCIDYLKLVFP-IF-ASGFSHYLAIFVVTLVLSFLNYTGLAIVGYTAVTLGVVSL-IPFLF 198 (483)
Q Consensus 122 ~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~-~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i-~~~~~ 198 (483)
+++|.+++++....+..+....+++...++ .. +++++...+++++++..+.+|++|.|..++++.+.+.+++ ..+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~l~~ 158 (426)
T PF13520_consen 79 IVGWLYWVAYILSLASVASSFASYLLSLFGPDLNPSPWPQFLIAIILILLFTLLNLLGIKLSGKIQNILTVIKIVIPLLV 158 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTTTGGGTCSHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccceeEEEeeccccccccchhhhhhhccccccccccchheeeeecccccceEeeechhhhhhhhhhhhhhhhhhhhhhh
Confidence 999999999999998889999999988764 32 2356777888999999999999999999999999999999 57667
Q ss_pred HHHHHhcccccccccc------cCCCCCCCchHHHHHHHHHHhcchHhhhhhhhhccCcCcchHHHHHHHHHHHHHHHHH
Q 044788 199 LTVIAIPKIDSIRWIS------LGQNGVPKNWRLFFNTLFWNLNFWDNASTLAGEVEQPQRTFPKALFSAGLLTCVAYLL 272 (483)
Q Consensus 199 ~~i~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~p~r~~p~a~~~~~~~~~~~y~l 272 (483)
+++.++...+.+..+. ...+....+....+...+|+|.|+|..++++||+|| ||+||+++.+.+++.++|.+
T Consensus 159 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~--k~ip~ai~~~~~~~~i~y~l 236 (426)
T PF13520_consen 159 LIILGIVSFSFSGFNSLSFSLSTFFPSGWPGFLAGFSVAFFAFSGFEAIASLAEENKN--KTIPRAIIISIIIVAIIYIL 236 (426)
T ss_dssp HHHHHHHSTTCCHHH----SHSCSSCSSSSHHHHHHHHHGGGGTTTTHHHHGGGGSSS--HHHHHHHHHHHHHHHHHHHH
T ss_pred heeEEEeeecccccccccccccccCCccccchhhHHHHHHhhcccccccccccccccc--hhheeecccchhHHHHHHhh
Confidence 6666666554433321 111111223444556678999999999999999887 89999999999999999999
Q ss_pred HHHHHhhccCCCCCCccc---cHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCCCchhhhccC
Q 044788 273 PLLAATGAIPLDQQNWVD---GYFAEVAEIIAGKWLKICIEIGACLSIIGLYEAQLSNCAYQILGMTNLGLLPKVFGSRS 349 (483)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~~~~~~ 349 (483)
.........|+++.+..+ ++....++..++++...++.+...++.+++.++.+.+.+|.+++|+|||.+|++|+|+|
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~ 316 (426)
T PF13520_consen 237 FSIALLGALPDDELANSSNSPSPFAVLASAVGGSWLAIIVSIAAILSLFGSINAFIFGASRLLYAMARDGVLPKWFAKVN 316 (426)
T ss_dssp HHHHHHTTSTHCHHHTTTCHHCHHHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSGGGGTTS
T ss_pred hhheeeecccchhhhcccccccccchhhccccccccccccccccccccccccchhhcchhhcccccccccchhhhhhhcc
Confidence 999999999988765433 36888888888889999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHH-h------cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 044788 350 SWFHTPWVGIFISTLIALTVS-Y------MDFTNIISCVNFLYSLGMLLEFASFLWLRKKLPATKR 408 (483)
Q Consensus 350 ~~~~~P~~ai~~~~i~~~~~~-~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 408 (483)
|+++|++++++..+++.++. . .+++.+.+..++...+.|.+..++.+++|+|+|+.+|
T Consensus 317 -k~~~P~~a~~~~~~i~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 381 (426)
T PF13520_consen 317 -KFGTPYNAIILVAVISSILLLLFLFIPQSSFDILVSLSSVGYLISYILVILAVLFLRRKRPDLKR 381 (426)
T ss_dssp -SSSSCHHHHHHHHHHHHHHHHHTTTSSSSHHHHHHHHHHHHTHHHHHHHHHHHHHTHHHSCSSGH
T ss_pred -ccCCceeeehhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcCC
Confidence 69999999999999986543 1 1478999999999999999999999999999887655
No 35
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=100.00 E-value=1.2e-41 Score=347.61 Aligned_cols=371 Identities=20% Similarity=0.260 Sum_probs=265.4
Q ss_pred cccccccchhHHHhhhhhhcccccCchhhHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-CChHHHhHHHHhC
Q 044788 38 VTSKKLSLLPLIFLIYFEVAGGPYGEEPAVGAAGPLFAILGFLIFPFIWSIPEALVTAELATTFPG-NGGYVIWAHHAFG 116 (483)
Q Consensus 38 ~~~r~l~~~~~~~~~i~~~iGg~~~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~l~~~el~~~~p~-~Gg~y~~~~~~~g 116 (483)
+++|+++++++..++++.++|. -..|.....+|+. .++.++++++++.++.+++++|+++++|+ +||.|+|+++++|
T Consensus 4 ~~~~~l~~~~l~~~~~~~vig~-~~~~~~~~~~G~~-~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aGG~Y~w~~~~~G 81 (496)
T PRK15238 4 NTKKKLSLIGLILMIFTSVFGF-ANSPRAFYLMGYS-AIPWYILSAILFFIPFALMMAEYGSAFKDEKGGIYSWMNKSVG 81 (496)
T ss_pred cccCeeeHHHHHHHHHHHHHhC-CchHHHHHHcChH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHcC
Confidence 3468899999999999999882 2346566778884 44456666666578999999999999997 7999999999999
Q ss_pred ChhHHHHHHHHHHHhhhhHHHHHHH-HHHHHHHhccc----------cccchHHHHHHHHHHHHHHHHHhhchhHHHHHH
Q 044788 117 PFWGSLMGSWKFLSGVINLASYPIL-CIDYLKLVFPI----------FASGFSHYLAIFVVTLVLSFLNYTGLAIVGYTA 185 (483)
Q Consensus 117 ~~~g~~~g~~~~~~~~~~~~~~~~~-~~~~l~~~~~~----------~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~ 185 (483)
|++||..+|.++.+++......... ........++. ...+.....+++++.++++.+|++|+|..++++
T Consensus 82 ~~~gf~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~t~vn~~g~~~~~~i~ 161 (496)
T PRK15238 82 PKFAFIGTFMWFASYIIWMVSTASKIWIPFSTFIFGKDTTQTWHFLGLNSTQVVGILAVIWMILVTFVASKGINKIAKVT 161 (496)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHccchHHHHHHH
Confidence 9999999999888776654333221 11111111111 011112234565666678899999999999999
Q ss_pred HHHHHHHHHHHHH----HHHHHhccc-c---cccccccC---CCC-C-CCchHHHHHHHHHHhcchHhhhhhhhhccCcC
Q 044788 186 VTLGVVSLIPFLF----LTVIAIPKI-D---SIRWISLG---QNG-V-PKNWRLFFNTLFWNLNFWDNASTLAGEVEQPQ 252 (483)
Q Consensus 186 ~~~~~~~i~~~~~----~~i~~~~~~-~---~~~~~~~~---~~~-~-~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~p~ 252 (483)
.+.++.++...++ ..+..+... + +.+..++. .++ . ..++...+....|+|.|+|.+++++||+|||+
T Consensus 162 ~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~~~p~ 241 (496)
T PRK15238 162 SIGGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTSPNPAYQSPIAVLSFVVFAIFAYGGIEAVGGLVDKTENPE 241 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccCCCCccccchHHHHHHHHHHHHHHhHHHHHHHHHhccCCC
Confidence 8877666543221 111111111 1 11111110 011 0 11233445557899999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcc------ccHHHHHHHH-----------------HcchHHHHHH
Q 044788 253 RTFPKALFSAGLLTCVAYLLPLLAATGAIPLDQQNWV------DGYFAEVAEI-----------------IAGKWLKICI 309 (483)
Q Consensus 253 r~~p~a~~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~------~~~~~~~~~~-----------------~~~~~~~~~~ 309 (483)
|++||+++.+...++++|++..+......|+++.... +.|.. +.+. ..+++...++
T Consensus 242 ~~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~g~~~~~~~~~g~~~~~~~ 320 (496)
T PRK15238 242 KNFPKGIIIAAIVISIGYSLAIFLWGVSTNWQQVLSNKSVNLGNITYV-LMNNLGYTLGHALGLSPAASLTLGVWFARIT 320 (496)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHhcCchhhcCCccccchhccHHH-HHHHHHHHHHHHhccchhhhhhhhHHHHHHH
Confidence 9999999999999999999998877777666554321 12221 1111 1234555566
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHhhhcCCCchhhhccCCCCCCCHHHHHHHHHHHHHHH-h--cC-------HHHHHH
Q 044788 310 EIGACLSIIGLYEAQLSNCAYQILGMTNLGLLPKVFGSRSSWFHTPWVGIFISTLIALTVS-Y--MD-------FTNIIS 379 (483)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~~~~~~~~~~~P~~ai~~~~i~~~~~~-~--~~-------~~~l~~ 379 (483)
.++.+++.+++.++..++.+|.++.+++||.+|++|+|+|| +++|+++++++.+++.+.. . .. |+.+.+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~g~~P~~f~k~nk-~g~P~~a~~~~~~i~~l~~~~~~~~~~~~~~~f~~l~~ 399 (496)
T PRK15238 321 GLSMFLAYTGAFFTLSYSPLKQLIEGTPKALWPKKMTKLNK-NGMPANAMWLQCIIVSVFILLVSFGGDAASAFFNILTL 399 (496)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhhCccCcccHHHHhhCc-CCCcHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 77888899999999999999999999999999999999995 9999999999888776553 1 11 688999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccC
Q 044788 380 CVNFLYSLGMLLEFASFLWLRKKLPATKRPFRVP 413 (483)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 413 (483)
+.+...++.|++.+++.+++|| +|+.+|||+.+
T Consensus 400 l~~~~~li~y~~~~~a~i~~r~-~~~~~r~~~~~ 432 (496)
T PRK15238 400 MANVSMTLPYLFLAGAFPFFKK-KKDIDRPFVVF 432 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh-ccCCCCCceec
Confidence 9999999999999999999876 57778887763
No 36
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=100.00 E-value=2.6e-44 Score=366.47 Aligned_cols=369 Identities=25% Similarity=0.377 Sum_probs=296.7
Q ss_pred HHHhhhhhhcc-ccc-CchhhHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCChHHHhHHHHhCChhHHHHHH
Q 044788 48 LIFLIYFEVAG-GPY-GEEPAVGAAGPLFAILGFLIFPFIWSIPEALVTAELATTFPGNGGYVIWAHHAFGPFWGSLMGS 125 (483)
Q Consensus 48 ~~~~~i~~~iG-g~~-~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~l~~~el~~~~p~~Gg~y~~~~~~~g~~~g~~~g~ 125 (483)
+..+++++++| |.+ ..+..+..+||.+.++++++++++ .++.+.+++|+++++|++||.|.|++|.+||..|+.+||
T Consensus 2 v~~~~ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~-~~~~~~~~~ems~~~p~~Gg~y~y~~~~lg~~~Gf~~gw 80 (478)
T PF00324_consen 2 VFMISIGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGII-VLLVALSLAEMSRRFPSAGGFYAYASRGLGPALGFAAGW 80 (478)
T ss_pred EEEeeHHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHH-HHhhhhhhhhhhhhhccccchhhhhhhccCCcCCceeeH
Confidence 34567788888 554 556667778887788999999998 999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHh--ccccccchHH-HHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHH
Q 044788 126 WKFLSGVINLASYPILCIDYLKLV--FPIFASGFSH-YLAIFVVTLVLSFLNYTGLAIVGYTAVTLGVVSLIPFLFLTVI 202 (483)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~-~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~~~~~~i~ 202 (483)
.+++.++...+......+.+++.. ++...+.+.. ..++.++.++...+|++|+|..++++.++..++++.++.+++.
T Consensus 81 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~gv~~~~~~~~~~~~i~~~~li~~ii~ 160 (478)
T PF00324_consen 81 AYWLSYIAAIAAEATAAGSFLQFWGYFPGLPSTWVWGILIAIIFILLITLLNLFGVRVSGKIEFILTIIKLIALIAFIIV 160 (478)
T ss_pred HHHHHHHHHHHhhhhhhhhhhccccccccccccccccchhhhhhhhhhhhhhhhhhhccchHHHHHHHHhhhHhhhhhhh
Confidence 999999999999988888888777 4443311111 1446677888899999999999999999999999888877776
Q ss_pred H-hc-cc--ccccc---cc------cCCC----CCCCchHHH---HHHHHHHhcchHhhhhhhhhccCcCcchHHHHHHH
Q 044788 203 A-IP-KI--DSIRW---IS------LGQN----GVPKNWRLF---FNTLFWNLNFWDNASTLAGEVEQPQRTFPKALFSA 262 (483)
Q Consensus 203 ~-~~-~~--~~~~~---~~------~~~~----~~~~~~~~~---~~~~~~a~~G~e~~~~~~~E~k~p~r~~p~a~~~~ 262 (483)
. +. .. ++.+. .. ..++ ....++.++ +...+++|.|+|.++.++||+|||+|++|||+..+
T Consensus 161 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~k~IPra~~~~ 240 (478)
T PF00324_consen 161 GVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEAKNPRKTIPRATLLS 240 (478)
T ss_pred cccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccCCCchhhhhhHhhhh
Confidence 6 21 11 11111 00 0000 011224444 44568999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCccc-----cHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhh
Q 044788 263 GLLTCVAYLLPLLAATGAIPLDQQNWVD-----GYFAEVAEIIAGKWLKICIEIGACLSIIGLYEAQLSNCAYQILGMTN 337 (483)
Q Consensus 263 ~~~~~~~y~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~ 337 (483)
++.++++|++...+.....|+++....+ +|+....+..++++...++.++.+.+++++.++.+++.+|++++|+|
T Consensus 241 ~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~i~~~~~l~s~~s~~~~~~~~~sR~l~ama~ 320 (478)
T PF00324_consen 241 VLRIGVFYVLTSYALTLAVPYDNLGLTAASNSASPFVIAAQYSGGPWLAWIVNAGILISAFSSANASLYAASRLLYAMAR 320 (478)
T ss_pred hhhhhhhhhhhhhhcccccCccchhhccccccccchhhhhhhcccccccceecccchhhhhhhhhhhhcccceeehhhhh
Confidence 9999999999999999998887754332 58999999999999999999999999999999999999999999999
Q ss_pred cCCCchhhhccCCCCCCCHHHHHHHHHHHHHHHhc-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC---
Q 044788 338 LGLLPKVFGSRSSWFHTPWVGIFISTLIALTVSYM-------DFTNIISCVNFLYSLGMLLEFASFLWLRKKLPATK--- 407 (483)
Q Consensus 338 dg~lP~~~~~~~~~~~~P~~ai~~~~i~~~~~~~~-------~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~--- 407 (483)
||.+|+++.+.|+|+++|++|+++..+++++..+. .++.+.+..++..++.|.+.+++.+++|++.+..+
T Consensus 321 dg~lP~~~~~~~~k~~~P~~Ai~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~r~~~~~~~~~~ 400 (478)
T PF00324_consen 321 DGLLPKKFFARHPKNGVPYVAILVSSIISLLVLLLGSFSPGIVFNWLLNISTISNLIVYILINISYIRFRKKFKYRGRSI 400 (478)
T ss_pred hhhhhhhhhhhhhcCCceEEEEeeehhchheeeeeccchhhHHHHHHhhhhhhhhhhHHHhhhhhhhhhhhhhccccccc
Confidence 99999777777777999999999999988776642 25677788888999999999999998888743322
Q ss_pred --CCcccCchhH
Q 044788 408 --RPFRVPMEML 417 (483)
Q Consensus 408 --~~~~~~~~~~ 417 (483)
.+++.+..+.
T Consensus 401 ~~~~~~~~~~~~ 412 (478)
T PF00324_consen 401 SELPFKSPFGPM 412 (478)
T ss_pred cccChhhhhhHH
Confidence 2566666543
No 37
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.97 E-value=1.7e-29 Score=250.36 Aligned_cols=358 Identities=14% Similarity=0.104 Sum_probs=262.2
Q ss_pred HHhhhhhhcc-cccCchhhHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCChHHHhHHHHhCChhHHHHHHHH
Q 044788 49 IFLIYFEVAG-GPYGEEPAVGAAGPLFAILGFLIFPFIWSIPEALVTAELATTFPGNGGYVIWAHHAFGPFWGSLMGSWK 127 (483)
Q Consensus 49 ~~~~i~~~iG-g~~~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~l~~~el~~~~p~~Gg~y~~~~~~~g~~~g~~~g~~~ 127 (483)
.++.+|+++| |++.+|...+..|....++..+++++. +...+++++|+++++|++||.|+|.++.+||..+++.+|.+
T Consensus 3 ~~lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~-~~~~~l~~~el~~~~p~~~~~~~~~~~~~G~~~g~~~~~~~ 81 (381)
T TIGR00837 3 ALIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFL-MLHSGLLLLEVYLTYPGGASFNTIAKDLLGKTGNIIAGLSL 81 (381)
T ss_pred eEEeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCCCCCHHHHHHHHhCHHHHHHHHHHH
Confidence 4567888999 899999988775543445556666666 88899999999999999999999999999999999999999
Q ss_pred HHHhhhhHHHHHHHHHHHHHHhccc-cccchHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 044788 128 FLSGVINLASYPILCIDYLKLVFPI-FASGFSHYLAIFVVTLVLSFLNYTGLAIVGYTAVTLGVVSLIPFLFLTVIAIPK 206 (483)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~ 206 (483)
++........+....++++..+++. ...+++.....+++.+++..++++|.|..++++.+++..++..++++.+.++.+
T Consensus 82 ~~~~~~~~~ay~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~G~~~~~~v~~i~~~~~l~~l~~~ii~~~~~ 161 (381)
T TIGR00837 82 LFVLYILTYAYISGGGSILSRLIGEYFGFPWSARAIVLIFTVLFGSFVWLSTSAVDRITRVLIFGKIIAFALVFSGLLPH 161 (381)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9998888888888888888887764 222345666677778888899999999999999999999998888888888877
Q ss_pred cccccccccCCC-CCCCchHHHHHHHHHHhcchH-hhhhhhhhccCcCcchHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 044788 207 IDSIRWISLGQN-GVPKNWRLFFNTLFWNLNFWD-NASTLAGEVEQPQRTFPKALFSAGLLTCVAYLLPLLAATGAIPLD 284 (483)
Q Consensus 207 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~G~e-~~~~~~~E~k~p~r~~p~a~~~~~~~~~~~y~l~~~~~~~~~~~~ 284 (483)
.+.+++.+.... ....+....+...+++| |+| ..+...+|.||++|++||+++.+..+++++|++......+..|.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~f-g~~~~i~~~~~~~~~~~k~i~raii~g~~i~~~lY~l~~~~~~g~~~~~ 240 (381)
T TIGR00837 162 VKGDLLLDVALDTSYWPYILSALPVCLTSF-GFHGNVPSLYKYYDGNVKKVKKSILIGSAIALVLYILWQLATMGNLPRS 240 (381)
T ss_pred ccHHHHhcCccccccHHHHHHHHHHHHHHH-HcccccHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 777776554221 01122334445566777 564 688889999877899999999999999999999999999999988
Q ss_pred CCCc------cccHHHHHHHH-HcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCCCchhhhccCCCCCCCHH
Q 044788 285 QQNW------VDGYFAEVAEI-IAGKWLKICIEIGACLSIIGLYEAQLSNCAYQILGMTNLGLLPKVFGSRSSWFHTPWV 357 (483)
Q Consensus 285 ~~~~------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~~~~~~~~~~~P~~ 357 (483)
++.+ +.+++.+..+. .++++...++..+..++..++.++...+.+ |+ +++.+++.+++++ |..
T Consensus 241 ~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~--------d~-l~~~~~~~~~~~~-~~~ 310 (381)
T TIGR00837 241 EFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLF--------DY-LADLFKFDDSKKG-RFK 310 (381)
T ss_pred HHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHH--------HH-HHHHhCCCcccCC-Cch
Confidence 7642 22455555554 456778888899999999999998887655 33 5555666555334 667
Q ss_pred HHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhCCCCCCCcccCchhHHHH
Q 044788 358 GIFISTLIALTVSY-MDFTNIISCVNFLYSLGMLLEFASFLW---LRKKLPATKRPFRVPMEMLGLI 420 (483)
Q Consensus 358 ai~~~~i~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~---~r~~~~~~~~~~~~~~~~~~~~ 420 (483)
+.++..+..+++.. .....+..+...+....+....+..+. .|||++ +.+||.|+.+....
T Consensus 311 ~~~~~~~~pl~~a~~~p~~~~~~l~~~G~~~~~~~~~~p~l~~~~~r~~~~--~~~~~~~~~~~~~~ 375 (381)
T TIGR00837 311 TGLLTFLPPLVFALFYPEGFLYAIGYAGLAATIWAVIIPALLAWKARKKFP--NAGYRVWGGNKLLL 375 (381)
T ss_pred hhhhhHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCccccCChHHHH
Confidence 77777777766663 222233333333333333333333333 344333 45899999976443
No 38
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.92 E-value=3.5e-22 Score=196.51 Aligned_cols=286 Identities=16% Similarity=0.165 Sum_probs=226.4
Q ss_pred ccccchhHHHhhhhhhcc-cccCchhhHhh-hChHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCChHHHhHHHHhCCh
Q 044788 41 KKLSLLPLIFLIYFEVAG-GPYGEEPAVGA-AGPLFAILGFLIFPFIWSIPEALVTAELATTFPGNGGYVIWAHHAFGPF 118 (483)
Q Consensus 41 r~l~~~~~~~~~i~~~iG-g~~~~~~~~~~-~G~~~~i~~~~~~~~~~~~~~~l~~~el~~~~p~~Gg~y~~~~~~~g~~ 118 (483)
+++|.+|..++.++.++| |++..|..+.+ +|+ ..+++++++++. .++.++++.|+++++|+. |.++|.++.+||.
T Consensus 1 ~~is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~-~~wi~~ll~~~~-~~~~~~~~~~l~~~~p~~-~~~~~~~~~~Gk~ 77 (359)
T TIGR00912 1 DKISSKQLIFLISSTMIGSGLLTLPALVSQSAGQ-DGWISIILGGLI-IIFLLCLMIKIMSKFPEK-NFSEILSKYLGKI 77 (359)
T ss_pred CcCcHHHHHHHHHHHHHHHHHHhhhHHHHhccCC-CeeHHHHHHHHH-HHHHHHHHHHHHHHCCCC-CHHHHHHHHhhHH
Confidence 368899999999999999 78899998766 665 566778888887 899999999999999987 7999999999999
Q ss_pred hHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHH-
Q 044788 119 WGSLMGSWKFLSGVINLASYPILCIDYLKLVF-PIFASGFSHYLAIFVVTLVLSFLNYTGLAIVGYTAVTLGVVSLIPF- 196 (483)
Q Consensus 119 ~g~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~~- 196 (483)
.|++.+|.++.......+......++++...+ |+ .+.+...+++.+.....+..|+|..+|++.++..+.+...
T Consensus 78 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----tp~~~~~l~~l~~~~~~~~~Gi~~i~r~~~i~~~~~i~~~~ 153 (359)
T TIGR00912 78 LGRLLSILFILYFFLIAAYLIRIFADFIKTYLLPR----TPIIVIIILIIIVSIYIVRKGIEVLLRTAEILLIIFLILFI 153 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988877777778888888887653 33 4567777788888889999999999999999988877663
Q ss_pred HHHHHHHhcccccccccccCCCCCCCchHHHHHHHHHHhcchHhhhhhhhhccCcCcchHHHHHHHHHHHHHHHHHHHHH
Q 044788 197 LFLTVIAIPKIDSIRWISLGQNGVPKNWRLFFNTLFWNLNFWDNASTLAGEVEQPQRTFPKALFSAGLLTCVAYLLPLLA 276 (483)
Q Consensus 197 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~p~r~~p~a~~~~~~~~~~~y~l~~~~ 276 (483)
+++........+.+++.|....+...-+.+......++|.|+|......+|+||| |+.||++..+..+++++|.+....
T Consensus 154 ~il~~~~~~~~~~~~l~P~~~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~-~~~~k~~~~~~~~~~~ly~~~~~~ 232 (359)
T TIGR00912 154 LVLILLAPKLGNIKNLLPVLENGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKK-KKIKKSIIKAIIIGVLLYILTTFV 232 (359)
T ss_pred HHHHHHhcccccHHHccCccccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCCh-hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444445566666665544211112233335668999999999999999997 569999999999999999999999
Q ss_pred HhhccCCCCCCccccHHHHHHHHHcch-H---HHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 044788 277 ATGAIPLDQQNWVDGYFAEVAEIIAGK-W---LKICIEIGACLSIIGLYEAQLSNCAYQILG 334 (483)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~ 334 (483)
..+..|+++.+....|..++.+....+ . ...++......+.+.....+++..++.+.+
T Consensus 233 ~i~~lg~~~~~~~~~P~~~~~~~i~~~~f~eR~e~~~~~~w~~~~f~~~~~~~~~~~~~~~~ 294 (359)
T TIGR00912 233 SISVFGGNVTKNLYWPTLELIKLINIGDFIERFELIVMTFWVFIIFVKIAFYLYIAVKGLSK 294 (359)
T ss_pred HHheecHHHhhhhcccHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988889999998877533 3 345555556666777777777777765444
No 39
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.91 E-value=4.9e-23 Score=200.97 Aligned_cols=366 Identities=19% Similarity=0.173 Sum_probs=262.4
Q ss_pred hhhHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-CChHHHhHHHHhCChhHHHHHHHHHHHhhhhHHHHHHHH
Q 044788 64 EPAVGAAGPLFAILGFLIFPFIWSIPEALVTAELATTFPG-NGGYVIWAHHAFGPFWGSLMGSWKFLSGVINLASYPILC 142 (483)
Q Consensus 64 ~~~~~~~G~~~~i~~~~~~~~~~~~~~~l~~~el~~~~p~-~Gg~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~ 142 (483)
+..+.++|..-.++.++++-.+ .+++.++...+++.--. .||.|..++|.+||.+|--.|..++++.++.+++++.++
T Consensus 91 gfIvG~aGll~Tll~lliaY~I-~llTvlSicAIsTNGaV~GGGaYymISRsLGpEfGGSIGllFf~anV~~~am~isG~ 169 (945)
T KOG1288|consen 91 GFIVGQAGLLKTLLMLLIAYAI-LLLTVLSICAISTNGAVRGGGAYYMISRSLGPEFGGSIGLLFFVANVFNCAMNISGF 169 (945)
T ss_pred hhhhcchHHHHHHHHHHHHHHH-HHHHHHHHhhhccCCceecCceEEEEEcccCcccCCeeeehhhHHHHhcchhhhhhh
Confidence 4445556664444444444444 66677777778777654 599999999999999999999999999999999999999
Q ss_pred HHHHHHhccc----------c-ccchHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 044788 143 IDYLKLVFPI----------F-ASGFSHYLAIFVVTLVLSFLNYTGLAIVGYTAVTLGVVSLIPFLFLTVIAIPKIDSIR 211 (483)
Q Consensus 143 ~~~l~~~~~~----------~-~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~ 211 (483)
.+-+.+.++. + .++|+..+-+.++..+...+.+.|....+|..++..++..+.+....+-.++......
T Consensus 170 vE~il~nfG~~a~g~sg~~~lP~g~ww~fly~t~vl~l~~~vc~lGsalfAkas~i~f~~is~s~~si~iS~ifvgp~~~ 249 (945)
T KOG1288|consen 170 VEPILDNFGKEAQGASGSQFLPDGYWWRFLYTTLVLALCLIVCLLGSALFAKASNILFVVISVSLFSIPISFIFVGPFKD 249 (945)
T ss_pred hHHHHHhcCccccCCcccccCCCCcchhhHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHHHHHhhhhheeEEeccccC
Confidence 9998888752 1 1567888888888888888999999999998877665544444333332222111110
Q ss_pred cc-cc------------CCCC---------------------CCCchHHHHHHHHHHhcchHhhhhhhhhccCcCcchHH
Q 044788 212 WI-SL------------GQNG---------------------VPKNWRLFFNTLFWNLNFWDNASTLAGEVEQPQRTFPK 257 (483)
Q Consensus 212 ~~-~~------------~~~~---------------------~~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~p~r~~p~ 257 (483)
-. +. +..| ...++...|...+-+.+|.-+.+++++|.|+|.|.+||
T Consensus 250 ~ip~~~~p~~sn~t~~~~yTG~~~sTl~dNL~~~yt~dyt~~~~~~F~~~FgV~F~g~tGimAGAnMSgELk~PSkSIP~ 329 (945)
T KOG1288|consen 250 PIPVPGDPILSNTTLFVHYTGLSWSTLMDNLGSHYTEDYTGGGYEDFASTFGVFFPGTTGIMAGANMSGELKAPSKSIPK 329 (945)
T ss_pred CCCCCCCccccCcceeeeecCccHHHHhhhhhhhhcccccCCCceehhhhheeeeccchhhhcCCCcCccccCccccCCc
Confidence 00 00 0000 01122223333444677999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCCCccccHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhh
Q 044788 258 ALFSAGLLTCVAYLLPLLAATGAIPLDQQNWVDGYFAEVAEIIAGKWLKICIEIGACLSIIGLYEAQLSNCAYQILGMTN 337 (483)
Q Consensus 258 a~~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~ 337 (483)
+.+.++....++|++..+......|...+.++-. +.+.. .....++.++.+.+.+.+.++.+.+++|++.++||
T Consensus 330 GTl~ava~Tf~~Yvl~~flm~~t~~r~~Lq~dy~----v~~~i--sl~p~fi~iGi~sttlfss~s~liGasrvL~alak 403 (945)
T KOG1288|consen 330 GTLSAVAFTFFVYVLVIFLMGCTVPRTLLQNDYD----VMMHI--SLHPPFILIGILSTTLFSSMSGLIGASRVLEALAK 403 (945)
T ss_pred cchHHHHHHHHHHHHHHHHhccCcchHHhhhchh----heeec--cccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhh
Confidence 9999999999999999999888877654443211 11111 22334555566667777778888899999999999
Q ss_pred cCCCc--hhhhccCCCCCCCHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCCCcccC
Q 044788 338 LGLLP--KVFGSRSSWFHTPWVGIFISTLIALTVSY-MDFTNIISCVNFLYSLGMLLEFASFLWLRKKL-PATKRPFRVP 413 (483)
Q Consensus 338 dg~lP--~~~~~~~~~~~~P~~ai~~~~i~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~-~~~~~~~~~~ 413 (483)
|+.+| -.|+|...+.+.|+.++.+.+.+.-++.+ .+++.+.++.+..+++.|..+.++++.++... |+.++.||.-
T Consensus 404 D~lfg~ll~fak~~s~~~nP~~av~vtw~lvqlvll~g~~N~iA~~it~~FLlty~~vNLacl~LeissAPNFRPtFkyF 483 (945)
T KOG1288|consen 404 DDLFGGLLFFAKGSSYDGNPYVAVGVTWLLVQLVLLWGDINKIASMITMTFLLTYGAVNLACLLLEISSAPNFRPTFKYF 483 (945)
T ss_pred cccchhhheeeeccccCCCceeeeeHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhh
Confidence 99999 57888888789999999999999877775 48999999999999999999999999988764 5555556653
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhhHH
Q 044788 414 MEMLGLIFMCIIPSGFLVYVMVVATKMV 441 (483)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (483)
-+ =.++++.+.++..++..+...
T Consensus 484 ~w-----~TclvG~l~s~~mMfvVd~~~ 506 (945)
T KOG1288|consen 484 NW-----HTCLVGVLLSLGMMFVVDRIN 506 (945)
T ss_pred hH-----HHHHHHHHHHHhhhheecchh
Confidence 33 234445555555555555433
No 40
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=99.91 E-value=3.6e-22 Score=196.36 Aligned_cols=417 Identities=16% Similarity=0.196 Sum_probs=282.5
Q ss_pred ccccchhHHHhhhhhhccccc--CchhhHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-CChHHHhHHHHhCC
Q 044788 41 KKLSLLPLIFLIYFEVAGGPY--GEEPAVGAAGPLFAILGFLIFPFIWSIPEALVTAELATTFPG-NGGYVIWAHHAFGP 117 (483)
Q Consensus 41 r~l~~~~~~~~~i~~~iGg~~--~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~l~~~el~~~~p~-~Gg~y~~~~~~~g~ 117 (483)
|-=++.++..-++-++.|-++ -+...+..+|....++..++.+.+ .++++.++..+++.--. +||.|..++|.+||
T Consensus 113 ~mGt~mGVyLPclQnIlGVilFiRLtWvVG~AGv~q~fllv~iCC~c-TmLTaISmSAIATNGVVpaGGsYfmISRsLGP 191 (1075)
T KOG2082|consen 113 RMGTLMGVYLPCLQNILGVILFIRLTWVVGMAGVGQGFLLVFICCLC-TMLTAISMSAIATNGVVPAGGSYFMISRSLGP 191 (1075)
T ss_pred ccceeeeeeHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCcccCCCeeEEEecccCc
Confidence 333446666667777777332 334445556665555545566666 88888888888877443 69999999999999
Q ss_pred hhHHHHHHHHHHHhhhhHHHHHHHHHHHHHH-hccccc--------cch-----HHHHHHHHHHHHHHHHHhhchhHHHH
Q 044788 118 FWGSLMGSWKFLSGVINLASYPILCIDYLKL-VFPIFA--------SGF-----SHYLAIFVVTLVLSFLNYTGLAIVGY 183 (483)
Q Consensus 118 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~--------~~~-----~~~~~~~~~~~~~~~i~~~g~~~~~~ 183 (483)
.+|-.+|.+++++..+..+++..+..+.+.. ++|... ... ...+-+.+++++.+++.+.|+|...+
T Consensus 192 EFGgAVGlcFYLgtT~AaaMYIlGaVEi~L~Yi~P~aaIf~~~~a~~~~~am~nnlRvYGT~~Li~m~lIVf~GVK~Vnk 271 (1075)
T KOG2082|consen 192 EFGGAVGLCFYLGTTVAAAMYILGAVEIFLTYIFPAAAIFGAEDAHDEAAAMLNNLRVYGTVFLILMALIVFVGVKFVNK 271 (1075)
T ss_pred cccceeeehhhhhhHHHHHHHHHhHHHHHHHHHccHhhhcCccccccchhhhhcceehHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999987766 465421 000 11245566778888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccc-c-----------------------------ccc----------------------
Q 044788 184 TAVTLGVVSLIPFLFLTVIAIPKI-D-----------------------------SIR---------------------- 211 (483)
Q Consensus 184 ~~~~~~~~~i~~~~~~~i~~~~~~-~-----------------------------~~~---------------------- 211 (483)
+..+.....++.++.+...++... + ..+
T Consensus 272 ~A~vfL~CVILSIlaiyaG~i~~~~~~~~~~vC~lgnr~L~~~~~d~c~k~~~~~~~~~~~~L~~~fC~~~~~~~~c~~y 351 (1075)
T KOG2082|consen 272 FAPVFLACVILSILAIYAGGIKSIFDPPGFPVCMLGNRLLSSSIFDNCSKTETVDNDNVTSFLWGLFCNSNNDSATCDEY 351 (1075)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhccCCCCCeeEEecceeccccccccchhhhccccccHHHHHHHhhCCCCCCCcccccc
Confidence 987776666665555444433100 0 000
Q ss_pred cccc------CCCCC------CCchHH---------------------------------H--HHHH-HHHhcchHhhhh
Q 044788 212 WISL------GQNGV------PKNWRL---------------------------------F--FNTL-FWNLNFWDNAST 243 (483)
Q Consensus 212 ~~~~------~~~~~------~~~~~~---------------------------------~--~~~~-~~a~~G~e~~~~ 243 (483)
+... +.+|. .+-|.. + +.+. |-+.+|+-+.++
T Consensus 352 ~~~nnvt~i~GipG~a~g~~~eNlws~Ylekg~~v~~g~~~~~~~~~~~~~~V~~Di~tSFtlLvgIfFPsVTGImaGSN 431 (1075)
T KOG2082|consen 352 FSKNNVTEIQGIPGLASGVFKENLWSAYLEKGEIVEYGVPSADIADSSGHPYVVQDITTSFTLLVGIFFPSVTGIMAGSN 431 (1075)
T ss_pred cccccceeecCCcchhhhhhhhhhhHhhhcccccccCCCCCCCcccccCCCceeecchhhHHHHHHhhccccceeeecCC
Confidence 0000 00000 000000 0 0111 235779999999
Q ss_pred hhhhccCcCcchHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcc--ccHHH--HHHHHHcchHHHHHHHHHHHHHHHH
Q 044788 244 LAGEVEQPQRTFPKALFSAGLLTCVAYLLPLLAATGAIPLDQQNWV--DGYFA--EVAEIIAGKWLKICIEIGACLSIIG 319 (483)
Q Consensus 244 ~~~E~k~p~r~~p~a~~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (483)
.+++.|||+|.+|.+.+.+.+....+|+...+.....+....+... ++.-. .++...+ +-.+++.++.++++++
T Consensus 432 rSGDLkDaQkSIPvGTI~AilTTS~vYlssv~lFGa~i~~~vLRDKfG~sv~g~lVva~laW--PsPwVi~IGsFlST~G 509 (1075)
T KOG2082|consen 432 RSGDLKDAQKSIPVGTIAAILTTSFVYLSSVVLFGACIEGVVLRDKFGQSVGGNLVVATLAW--PSPWVIVIGSFLSTCG 509 (1075)
T ss_pred CCccccchhhcCchhhhHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhhccCcEEEEEecC--CCceeeehhHHHHHhH
Confidence 9999999999999999999999999999988877776552221110 00000 0000111 2346777889999999
Q ss_pred HHHHHhhhhhHHHHHhhhcCCCc--hhhhccCCCCCCCHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHHHHHH
Q 044788 320 LYEAQLSNCAYQILGMTNLGLLP--KVFGSRSSWFHTPWVGIFISTLIALTVS-YMDFTNIISCVNFLYSLGMLLEFASF 396 (483)
Q Consensus 320 ~~~~~~~~~sR~l~~~a~dg~lP--~~~~~~~~~~~~P~~ai~~~~i~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~ 396 (483)
..+-.+.+++|++++.|||+.+| +.|++.++ .+-|.+|+++..+++-+.+ +.+.+.+..+.+.+++.+|..+.+++
T Consensus 510 AgLQsLtgAPRLLQAIAkD~IiPfL~~F~~~~~-ngEPt~aLlLT~~Ice~gILigslD~iApilsmFFLMCY~fVNLaC 588 (1075)
T KOG2082|consen 510 AGLQSLTGAPRLLQAIAKDDIIPFLAPFGHGKA-NGEPTWALLLTAIICECGILIGSLDLIAPILSMFFLMCYLFVNLAC 588 (1075)
T ss_pred HHHhhhcCcHHHHHHHhhcCccchhhhhccccC-CCCccHHHHHHHHHHHhhheeechhHHHHHHHHHHHHHHHHHhHHH
Confidence 99999999999999999999999 89999888 8999999999999997766 56799999999999999999999888
Q ss_pred HHHH-HhCCCCCCCcccCchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH-HHHHHhcccccc
Q 044788 397 LWLR-KKLPATKRPFRVPMEMLGLIFMCIIPSGFLVYVMVVATKMVCFVSALLTFFGIFLYF-FIKLCRSNKWLE 469 (483)
Q Consensus 397 ~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~ 469 (483)
...- .|.|+++++||...| ..+++++..|+..++...|...+++ +++..++|- +-.+-.+|+|-|
T Consensus 589 avqtLLrtPnWRPRfkyyHW-----~LSflG~sLC~~iMF~~SWyyAlvA---m~~a~~IYKYiEykGAeKEWGD 655 (1075)
T KOG2082|consen 589 AVQTLLRTPNWRPRFKYYHW-----SLSFLGASLCLAIMFISSWYYALVA---MLIAGVIYKYIEYKGAEKEWGD 655 (1075)
T ss_pred HHHHHhcCCCCCccchhhhh-----HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhccccchhcc
Confidence 7644 356777666776444 2345556666666766666555443 334444553 333333444444
No 41
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=99.90 E-value=2.3e-20 Score=180.25 Aligned_cols=337 Identities=15% Similarity=0.094 Sum_probs=248.7
Q ss_pred hhhcc-cccCchhhHhh-hCh--HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCChHHHhHHHHhCChhHHHHHHHHHH
Q 044788 54 FEVAG-GPYGEEPAVGA-AGP--LFAILGFLIFPFIWSIPEALVTAELATTFPGNGGYVIWAHHAFGPFWGSLMGSWKFL 129 (483)
Q Consensus 54 ~~~iG-g~~~~~~~~~~-~G~--~~~i~~~~~~~~~~~~~~~l~~~el~~~~p~~Gg~y~~~~~~~g~~~g~~~g~~~~~ 129 (483)
+.-.| |-+-.|..+.+ +|. ...+++|+++++. ..+.+++ +.|++||.|++.++..||+.|++.+|+.++
T Consensus 6 amffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~-lpllgl~------av~~~gG~~~~l~~~~g~~f~~lf~~~~~l 78 (378)
T TIGR00796 6 ALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVG-LPLLGLI------ALALVGGGYDSLSARIGKVFGILFTVILYL 78 (378)
T ss_pred HHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHH-HHHHHHh------eeeecCCCHHHHHHHhChHHHHHHHHHHHH
Confidence 33346 55667776655 443 3567889999987 5555554 899999999999999999999999998876
Q ss_pred Hhh-hh----HHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044788 130 SGV-IN----LASYPILCIDYLKLVFPIFASGFSHYLAIFVVTLVLSFLNYTGLAIVGYTAVTLGVVSLIPFLFLTVIAI 204 (483)
Q Consensus 130 ~~~-~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~ 204 (483)
..- .. .+..+...+ +..++|...+.....+.++++..+..++++++.|...+++.+++...++.++++++.++
T Consensus 79 ~iGP~~aiPRtaa~s~e~~--i~p~~~~~~~~~~l~i~siiff~i~~~l~~~~~k~~~~iGk~LTP~lLi~l~~lii~g~ 156 (378)
T TIGR00796 79 TIGPLFAIPRTATVSFEMG--IAPLLHSPTSLLALFIFSLIFFAVVLLLSLNPSKLIDRVGKFLTPALLVTLLALIIKAL 156 (378)
T ss_pred HHHhchhhhHHHHHHHHHH--HHhccCcccchHHHHHHHHHHHHHHHHHHcCcccHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 533 22 223333222 33344432222344556777777777799999999999999999999999999888888
Q ss_pred cccccccccccCCCCCC-CchHHHHHHHHHHhc-------chHhhhhhhh-hccCcCcchHHHHHHHH-HHHHHHHHHHH
Q 044788 205 PKIDSIRWISLGQNGVP-KNWRLFFNTLFWNLN-------FWDNASTLAG-EVEQPQRTFPKALFSAG-LLTCVAYLLPL 274 (483)
Q Consensus 205 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~-------G~e~~~~~~~-E~k~p~r~~p~a~~~~~-~~~~~~y~l~~ 274 (483)
.+...+...+. .+..+ ..+...+....+.+. |+-.+.++.+ |.|||+|+.|+.+..+. ..+.+.|+...
T Consensus 157 ~~p~g~~~~~~-~~~~~~~~f~~g~l~GY~TmD~laal~fg~iiv~~i~~~g~~~~~~~~~~~i~~G~ia~i~l~~vY~~ 235 (378)
T TIGR00796 157 LWPAGPILAAS-GAYASQQAFSKGFLEGYLTMDALAALVFGIIVVNAIRSRGVTKPKKITKYTIKAGLIAAVLLAFIYLS 235 (378)
T ss_pred HcCCCCcCCcc-cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65433211111 11111 235555555667777 8888888888 99999999999999999 56677777778
Q ss_pred HHHhhccCCCCCC---ccccHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCCCchhhhccCCC
Q 044788 275 LAATGAIPLDQQN---WVDGYFAEVAEIIAGKWLKICIEIGACLSIIGLYEAQLSNCAYQILGMTNLGLLPKVFGSRSSW 351 (483)
Q Consensus 275 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~~~~~~~~ 351 (483)
++..+..+.++.. +....+.++.+...|+.+..++.+.+.++|+++.++...+.++ .|+|.++|
T Consensus 236 L~~lGa~~~~~~~~~~~~~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~-------------~f~~~~~k 302 (378)
T TIGR00796 236 LFYLGATSAAAAGDAVNGAQILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSE-------------YFHKLVPK 302 (378)
T ss_pred HHHHhcCcHhhhcccCCcHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHhcCC
Confidence 8877777655433 3566888999999999999999999999999999999987553 57777763
Q ss_pred CCCCHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhCCCCCCCcccCch
Q 044788 352 FHTPWVGIFISTLIALT-VSYMDFTNIISCVNFLYSLGMLLEFASFLW--LRKKLPATKRPFRVPME 415 (483)
Q Consensus 352 ~~~P~~ai~~~~i~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~~~ 415 (483)
+|+++.++...+... +...+++.+.++..-...+.|-+.....+. +||+.|+.+|+||.+..
T Consensus 303 --~~y~~~v~~~~l~s~~ia~~Gl~~Ii~~~~PvL~~~YP~~i~lill~ll~~~~~~~~~~y~~~~~ 367 (378)
T TIGR00796 303 --LSYKTWVIVFTLFSFIVANLGLTQIISISIPVLMIIYPLAIVLILLSFLRKLWDSKRAVYQITLI 367 (378)
T ss_pred --CCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeeehHHH
Confidence 999999876665554 447889999999888888888888877776 78888888899998544
No 42
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.90 E-value=7e-20 Score=179.92 Aligned_cols=367 Identities=17% Similarity=0.186 Sum_probs=270.0
Q ss_pred cccchhHHHhhhhhhcc-cccCchhhHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCChHHHhHHHHhCChhH
Q 044788 42 KLSLLPLIFLIYFEVAG-GPYGEEPAVGAAGPLFAILGFLIFPFIWSIPEALVTAELATTFPGNGGYVIWAHHAFGPFWG 120 (483)
Q Consensus 42 ~l~~~~~~~~~i~~~iG-g~~~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~l~~~el~~~~p~~Gg~y~~~~~~~g~~~g 120 (483)
+-+.++..++.+|+.+| |++++|...+.+|....++..++.... +...++.++|.+.+.|+..+.-+.+++.+|+..+
T Consensus 2 ~~~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~-~~~s~l~~~E~~~~~~~~~~~~~~a~~~lG~~g~ 80 (394)
T PF03222_consen 2 NNSILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPL-MYYSGLLLAEVSLNTPEGSSLTSMAEKYLGKKGG 80 (394)
T ss_pred CchHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCCCCCHHHHHHHHhChHHH
Confidence 44678889999999999 889999999988887777777777776 8889999999999999988999999999999999
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHhccccc-cchHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHH
Q 044788 121 SLMGSWKFLSGVINLASYPILCIDYLKLVFPIFA-SGFSHYLAIFVVTLVLSFLNYTGLAIVGYTAVTLGVVSLIPFLFL 199 (483)
Q Consensus 121 ~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~~~~~ 199 (483)
++.+..+++........+..+.++.+.++++... .+.+.....+++..++..+.+.|.|...|++..+...+++.+++.
T Consensus 81 ~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~~~~~~~~~~~~f~~i~~~iv~~g~~~v~~~n~~lv~~~i~~~~~l 160 (394)
T PF03222_consen 81 IVIGISYLFLLYALLVAYISGGGSILSSLLGNQLGTDLSPWLSSLLFTIIFGGIVYFGTKAVDRINRVLVFGMIISFIIL 160 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998888888999999999999887543 345566677777777777888999999999999999999999999
Q ss_pred HHHHhcccccccccccCCCC-CCCchHHHHHHHHHHhcchHhhhhhhhhccCcCcchHHHHHHHHHHHHHHHHHHHHHHh
Q 044788 200 TVIAIPKIDSIRWISLGQNG-VPKNWRLFFNTLFWNLNFWDNASTLAGEVEQPQRTFPKALFSAGLLTCVAYLLPLLAAT 278 (483)
Q Consensus 200 ~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~p~r~~p~a~~~~~~~~~~~y~l~~~~~~ 278 (483)
.+..+++.+.+++...+... ........++..+++|.-...++.+.+..++-+|+++|+++.+..+..++|++....+.
T Consensus 161 ~~~~~p~~~~~~L~~~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~~k~~~ai~~Gs~i~lv~yl~w~~~~l 240 (394)
T PF03222_consen 161 VVYLIPHWNPSNLLDAPPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDPKKIRKAIIIGSLIPLVMYLLWVFSIL 240 (394)
T ss_pred HHHHhhhcCHHHhhccccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888876632221 12223345666789999999999999999976788999999999999999999999999
Q ss_pred hccCCCCCC---ccc---cHHHHHHH-HHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCCCchhhhccCCC
Q 044788 279 GAIPLDQQN---WVD---GYFAEVAE-IIAGKWLKICIEIGACLSIIGLYEAQLSNCAYQILGMTNLGLLPKVFGSRSSW 351 (483)
Q Consensus 279 ~~~~~~~~~---~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~~~~~~~~ 351 (483)
+.+|.++.. +.+ .++....+ ...+++......+...++..+|..+...+....+... +++.+++
T Consensus 241 g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~---------~k~~~~~ 311 (394)
T PF03222_consen 241 GSLPREQFAEAIAQGGNVSALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFLADL---------FKLKNNS 311 (394)
T ss_pred hcCCHHHHHHHHhcCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HcCCccc
Confidence 988876532 112 23333333 4457888888899999999999888887766654332 3332221
Q ss_pred CCCCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccCchhHHHH
Q 044788 352 FHTPWVGIFISTLIALTVSYM---DFTNIISCVNFLYSLGMLLEFASFLWLRKKLPATKRPFRVPMEMLGLI 420 (483)
Q Consensus 352 ~~~P~~ai~~~~i~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 420 (483)
.+. .....+..+..+++.+. .|....+..+....+.+.+. ..+..++.|+++.+++|+.++......
T Consensus 312 ~~r-~~~~~ltf~ppl~~a~~~p~~F~~al~~aG~~~~il~~il-P~~m~~~~r~~~~~~~~~~~gg~~~l~ 381 (394)
T PF03222_consen 312 SGR-LKTWLLTFLPPLIFALLFPNGFLIALGYAGIGIAILLGIL-PALMVWKARKRKPKQPYRVPGGNFTLL 381 (394)
T ss_pred cch-HHHHHHHHHhHHHHHHHCcHHHHHHHHhhcHHHHHHHHHH-HHHHHHHHHcccCCCCeEEeCcHHHHH
Confidence 112 22333334444444432 25555566564433333333 333334444444455699877754443
No 43
>PRK10483 tryptophan permease; Provisional
Probab=99.88 E-value=4.4e-19 Score=172.37 Aligned_cols=375 Identities=13% Similarity=0.123 Sum_probs=267.9
Q ss_pred cccccccchhHHHhhhhhhcc-cccCchhhHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCChHHHhHHHHhC
Q 044788 38 VTSKKLSLLPLIFLIYFEVAG-GPYGEEPAVGAAGPLFAILGFLIFPFIWSIPEALVTAELATTFPGNGGYVIWAHHAFG 116 (483)
Q Consensus 38 ~~~r~l~~~~~~~~~i~~~iG-g~~~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~l~~~el~~~~p~~Gg~y~~~~~~~g 116 (483)
..|++.+.++..++..|+.+| |++++|...+..|-...+...++.+++ +...++++.|.+.++|+.-+.-..+++.+|
T Consensus 6 ~~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~-M~~taLlllEv~l~~~~g~~~~tma~~~LG 84 (414)
T PRK10483 6 TTQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFC-MLHSGLMILEANLNYRIGSSFDTITKDLLG 84 (414)
T ss_pred cccCCCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCCCCHHHHHHHHcC
Confidence 456788899999999999999 889999999998887777777777776 999999999999999998889999999999
Q ss_pred ChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHH
Q 044788 117 PFWGSLMGSWKFLSGVINLASYPILCIDYLKLVFPIFASGFSHYLAIFVVTLVLSFLNYTGLAIVGYTAVTLGVVSLIPF 196 (483)
Q Consensus 117 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~~ 196 (483)
|.+..+.+.++.+-......+|....++.+...+++.+.+.+.+..++++..++..+.+.|.|...|+|+++...+++.+
T Consensus 85 ~~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~~~~i~~~~~~llF~~~~~~iv~~gt~~vd~~n~~l~~~~i~~f 164 (414)
T PRK10483 85 KGWNVVNGISIAFVLYILTYAYISASGSILHHTFAEMSLNVPARAAGFGFALLVAFVVWLSTKAVSRMTAIVLGAKVITF 164 (414)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 99887777777777667778888889999988887544345677888899999999999999999999999999999888
Q ss_pred HHHHHHHhcccccccccccCCCCCC--CchHHHHHHHHHHhcchHhhhhhhhhccCcCcchHHHHHHHHHHHHHHHHHHH
Q 044788 197 LFLTVIAIPKIDSIRWISLGQNGVP--KNWRLFFNTLFWNLNFWDNASTLAGEVEQPQRTFPKALFSAGLLTCVAYLLPL 274 (483)
Q Consensus 197 ~~~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~G~e~~~~~~~E~k~p~r~~p~a~~~~~~~~~~~y~l~~ 274 (483)
+..+...+++.+.+++.+....... ......++..+++|.=...++++.+..++-.|+++|+++.+..+..++|++..
T Consensus 165 ~~~~~~l~~~i~~~~L~~~~~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~~kir~~I~iGs~Iplv~yl~W~ 244 (414)
T PRK10483 165 FLTFGSLLGHVQPATLFNVAESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPKTIVKCLVYGTLMALALYTIWL 244 (414)
T ss_pred HHHHHHHHhhcCHHHHhccccccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887777778777766543322100 12334566678888888999999988876556899999999999999999999
Q ss_pred HHHhhccCCCCCC----ccc--c-HHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCCCchhhhc
Q 044788 275 LAATGAIPLDQQN----WVD--G-YFAEVAEIIAGKWLKICIEIGACLSIIGLYEAQLSNCAYQILGMTNLGLLPKVFGS 347 (483)
Q Consensus 275 ~~~~~~~~~~~~~----~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~~~~ 347 (483)
.++.+.+|+++.. ..+ + ......+....+....+..++..++..+|..+...+....+.++- ++
T Consensus 245 ~~~lg~l~~~~~~~~~~~~~ni~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D~~---------k~ 315 (414)
T PRK10483 245 LATMGNIPRPEFIGIAEKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLF---------GF 315 (414)
T ss_pred HHHhcCCCHHHHHHHHHcCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------CC
Confidence 9999999876531 111 1 234444555667788888888888888888877776665555443 22
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccCchhHHHHHHHH
Q 044788 348 RSSWFHTPWVGIFISTLIALTVSYMD---FTNIISCVNFLYSLGMLLEFASFLWLRKKLPATKRPFRVPMEMLGLIFMCI 424 (483)
Q Consensus 348 ~~~~~~~P~~ai~~~~i~~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 424 (483)
.+++.+.. ...++..+..+++.+.. |..-.+.+.....+...+ ...++..+.|++..+.+|+.|+..+...++.+
T Consensus 316 ~~~~~~r~-~~~~ltflPPl~~al~~P~~Fl~AL~yAG~~~~il~~i-lP~lM~~~~Rk~~~~~~y~v~Gg~~~l~~~~~ 393 (414)
T PRK10483 316 DDSAMGRF-KTALLTFLPPVVGGLLFPNGFLYAIGYAGLAATIWAAI-VPALLARASRKRFGSPKFRVWGGKPMIVLILL 393 (414)
T ss_pred CCccccce-eeehhhHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCCCCceecCCHHHHHHHHH
Confidence 22111211 12233444444444322 333334444333333322 22333333333322467999988765444333
No 44
>PHA02764 hypothetical protein; Provisional
Probab=99.88 E-value=8.3e-21 Score=170.19 Aligned_cols=279 Identities=14% Similarity=0.127 Sum_probs=176.7
Q ss_pred hcccccccccccchhHHHhhhhhhcccc-cCchhhHhh--hChHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCChHHH
Q 044788 33 QSTITVTSKKLSLLPLIFLIYFEVAGGP-YGEEPAVGA--AGPLFAILGFLIFPFIWSIPEALVTAELATTFPGNGGYVI 109 (483)
Q Consensus 33 ~~~~~~~~r~l~~~~~~~~~i~~~iGg~-~~~~~~~~~--~G~~~~i~~~~~~~~~~~~~~~l~~~el~~~~p~~Gg~y~ 109 (483)
.++.+.+-|+.+.+|.+...++.+.+|. ...+..... .|. ..+++|++++++ +++.+++|+|+++++|++||.|.
T Consensus 4 vReSSGLVREvs~lDAF~~Nl~~m~~Gi~Is~~~l~a~l~pG~-nlLLAWLLGGLl-ALPgAL~YAELGSAmPrAGGdYV 81 (399)
T PHA02764 4 ERKSSGIIKSFNILDIFSINLLYMGILSGISYPLFVSSLLKNV-NLLFAILIGAVF-EIPLLLMYYKLTTKFPLNGGDYA 81 (399)
T ss_pred chhcCCceeeccHHHHHHHHHHhhccchhHHHHHHHhhcCCch-hHHHHHHHHHHH-HHHHHHHHHHHHhhCCCCCceEE
Confidence 3557789999999999999999884443 232332332 344 577889999998 99999999999999999999999
Q ss_pred hHHHHhCChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHH
Q 044788 110 WAHHAFGPFWGSLMGSWKFLSGVINLASYPILCIDYLKLVFPIFASGFSHYLAIFVVTLVLSFLNYTGLAIVGYTAVTLG 189 (483)
Q Consensus 110 ~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~ 189 (483)
|.+|++||..|++.||..|..+....+..+-... +..... +......+..-+ .....+-..|.|..+|...++.
T Consensus 82 YISRAFGP~~GFLvG~a~WLtl~~G~Pal~~l~~--~~~~i~---~~~~~f~~~~s~-~~i~~~i~~~~~~~~~~v~il~ 155 (399)
T PHA02764 82 YIRTAFSSKFYTIFGISLWLTYVLSQPILGDLVL--LNFNIQ---NQFEQFLIVESL-FPIVLLIIANKKIYAKIVDILA 155 (399)
T ss_pred EhHHhhCccHHHHHHHHHHHHHHhhcchhhheee--eeeeeH---HHHHHHHHHHHH-HHHHHHHHcccHHHHHHHHHHH
Confidence 9999999999999999999987776544332111 000000 001111111111 1222233356778777766644
Q ss_pred HHHHHHHHHHHHHHhcccccccccccCCCCCCCchHHHHHHHHHHhcchHhhhhhhhhccCcCcchHHHHHHHHHHHHHH
Q 044788 190 VVSLIPFLFLTVIAIPKIDSIRWISLGQNGVPKNWRLFFNTLFWNLNFWDNASTLAGEVEQPQRTFPKALFSAGLLTCVA 269 (483)
Q Consensus 190 ~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~p~r~~p~a~~~~~~~~~~~ 269 (483)
....+ . ..+.....-|+...+..- +...........-+|.=.|+..+.++|.||.+|....+-..+...+.++
T Consensus 156 ~a~~i---~---aif~~~~s~n~~~~~f~~-snt~~~a~~~~l~~~~fi~a~~y~~~ei~n~~k~~~~gyf~s~~~~~~~ 228 (399)
T PHA02764 156 IAQII---I---AIFIAFKSFNFQYQNFTI-SNTLLSALLFDLSAFIFINAISYIAGEIKNIKKSSMIGYFVSYGIVAIL 228 (399)
T ss_pred HHHHH---H---HHHhhccceeEEEcceee-hHHHHHHHHHHHHHHHHhccHHHHHHHhhcchhhhhhhhHHHHHHHHHH
Confidence 44433 1 111112222222222211 1222223333345666789999999999999988887777776655444
Q ss_pred HHHHHHHHhhccCCCCCCccccHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCCCchhhhccC
Q 044788 270 YLLPLLAATGAIPLDQQNWVDGYFAEVAEIIAGKWLKICIEIGACLSIIGLYEAQLSNCAYQILGMTNLGLLPKVFGSRS 349 (483)
Q Consensus 270 y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~~~~~~ 349 (483)
-.... +.+ -.+..+.+..+.++-+....-..||..++|+.|+.+|++|+|.+
T Consensus 229 ~ii~s-------------------------y~n---~~il~~~~~~w~~~y~~~~~~~~srli~~~~fd~~lpe~f~k~~ 280 (399)
T PHA02764 229 SIIDS-------------------------YSN---LNILFALMPIWFFSYMPIANKIQSRLIQTMSFDKVLPEKFSKIN 280 (399)
T ss_pred HHHHh-------------------------hhh---HHHHHHHHHHHHHhheeeecchHHHHHHHHHhhhhchHHHhccC
Confidence 33322 000 01111224455666655556678999999999999999999999
Q ss_pred CCCCCCH
Q 044788 350 SWFHTPW 356 (483)
Q Consensus 350 ~~~~~P~ 356 (483)
| ++|.
T Consensus 281 ~--nv~~ 285 (399)
T PHA02764 281 P--NVLL 285 (399)
T ss_pred C--Ccee
Confidence 8 7887
No 45
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.87 E-value=1e-18 Score=169.59 Aligned_cols=371 Identities=12% Similarity=0.081 Sum_probs=260.5
Q ss_pred cchhHHHhhhhhhcc-cccCchhhHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCChHHHhHHHHhCChhHHH
Q 044788 44 SLLPLIFLIYFEVAG-GPYGEEPAVGAAGPLFAILGFLIFPFIWSIPEALVTAELATTFPGNGGYVIWAHHAFGPFWGSL 122 (483)
Q Consensus 44 ~~~~~~~~~i~~~iG-g~~~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~l~~~el~~~~p~~Gg~y~~~~~~~g~~~g~~ 122 (483)
+.+...++..|+.+| |.+++|...+..|-...+...++.+++ +...++++.|.+.++|..-+.-..+++.+|+.+..+
T Consensus 10 ~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~-M~~t~LlllEv~l~~~~g~~l~tma~~~LG~~g~~i 88 (415)
T PRK09664 10 SAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFS-MLHSGLLLLEANLNYPVGSSFNTITKDLIGNTWNII 88 (415)
T ss_pred chhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCCCCHHHHHHHHcChHHHHH
Confidence 667789999999999 889999999998887777777777776 999999999999999998889999999999988887
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHhccc-cccchHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHH
Q 044788 123 MGSWKFLSGVINLASYPILCIDYLKLVFPI-FASGFSHYLAIFVVTLVLSFLNYTGLAIVGYTAVTLGVVSLIPFLFLTV 201 (483)
Q Consensus 123 ~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~~~~~~i 201 (483)
.+.++.+-......+|....++.+...++. .+-+.+....++++.+++..+.+.|.|...++++++...+++.++..+.
T Consensus 89 ~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~~~~i~~~~~~llF~~~~~~~v~~gt~~vd~~nr~l~~~~ii~f~~~~~ 168 (415)
T PRK09664 89 SGITVAFVLYILTYAYISANGAIISETISMNLGYHANPRIVGICTAIFVASVLWISSLAASRITSLFLGLKIISFVIVFG 168 (415)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHhhhccCCCcHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777776777788888899999888764 2223455566788888899999999999999999999999998888888
Q ss_pred HHhcccccccccccCCCCCCC----chHHHHHHHHHHhcchHhhhhhhhhccCcCcchHHHHHHHHHHHHHHHHHHHHHH
Q 044788 202 IAIPKIDSIRWISLGQNGVPK----NWRLFFNTLFWNLNFWDNASTLAGEVEQPQRTFPKALFSAGLLTCVAYLLPLLAA 277 (483)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~a~~G~e~~~~~~~E~k~p~r~~p~a~~~~~~~~~~~y~l~~~~~ 277 (483)
...++.+.+++.+.+...... .....++..+++|.=...++++....++-.|+.+|+++.+..+..++|++...+.
T Consensus 169 ~l~~~i~~~~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d~~~~~kaIl~Gs~IpLviY~~W~~~i 248 (415)
T PRK09664 169 SFFFQVDYSILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRKDKLIKSVVFGSLLALVIYLFWLYCT 248 (415)
T ss_pred HHhhcccHHHHhcCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888887776543221111 1334456677888888888888888876568899999999999999999999999
Q ss_pred hhccCCCCCC----cc-c--cHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCCCchhhhccCC
Q 044788 278 TGAIPLDQQN----WV-D--GYFAEVAEIIAGKWLKICIEIGACLSIIGLYEAQLSNCAYQILGMTNLGLLPKVFGSRSS 350 (483)
Q Consensus 278 ~~~~~~~~~~----~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~~~~~~~ 350 (483)
.+.+|+++.. +. + .......+...+++...+..+...++..+|..+...+....+..+ +++.++
T Consensus 249 lG~lp~~~~~~~~~~g~nv~~l~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D~---------~~~~~~ 319 (415)
T PRK09664 249 MGNIPRESFKAIISSGGNVDSLVKSFLGTKQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADL---------FKIDNS 319 (415)
T ss_pred hcCCCHHHHHHHHHcCCCchHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hCCCCc
Confidence 9988876531 11 1 122333344456778888888888888888877776555544433 333222
Q ss_pred C-CCCCHHHHHHHHHHHHHHHh--cC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccCchhHHHHHHHHHH
Q 044788 351 W-FHTPWVGIFISTLIALTVSY--MD-FTNIISCVNFLYSLGMLLEFASFLWLRKKLPATKRPFRVPMEMLGLIFMCIIP 426 (483)
Q Consensus 351 ~-~~~P~~ai~~~~i~~~~~~~--~~-~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (483)
+ .+.... .+..+..+++.+ .+ |-.-.+.+.....+ +.....+++..+.|++..+.+||.|+......+..+.+
T Consensus 320 ~~~r~~~~--~ltflPPl~~al~~P~gFl~AL~yAG~~~~i-l~~ilP~lM~~~~Rk~~~~~~y~v~GG~~~l~~~~~~g 396 (415)
T PRK09664 320 HGGRFKTV--LLTFLPPALLYLIFPNGFIYGIGGAGLCATI-WAVIIPAVLAIKARKKFPNQMFTVWGGNLIPAIVILFG 396 (415)
T ss_pred cccceeee--hhhHhhhHHHHHHhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcccCCCCceeeCCHHHHHHHHHHH
Confidence 1 222222 233444444442 22 33333444443222 22223333333333332346899999976555444333
Q ss_pred H
Q 044788 427 S 427 (483)
Q Consensus 427 ~ 427 (483)
.
T Consensus 397 ~ 397 (415)
T PRK09664 397 I 397 (415)
T ss_pred H
Confidence 3
No 46
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.87 E-value=1.8e-18 Score=168.98 Aligned_cols=366 Identities=16% Similarity=0.132 Sum_probs=263.8
Q ss_pred cchhHHHhhhhhhcc-cccCchhhHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCChHHHhHHHHhCChhHHH
Q 044788 44 SLLPLIFLIYFEVAG-GPYGEEPAVGAAGPLFAILGFLIFPFIWSIPEALVTAELATTFPGNGGYVIWAHHAFGPFWGSL 122 (483)
Q Consensus 44 ~~~~~~~~~i~~~iG-g~~~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~l~~~el~~~~p~~Gg~y~~~~~~~g~~~g~~ 122 (483)
+.+...++..|+.+| |++++|...+.+|....+...++.+.+ +...++.+.|.+.+.|...+.-+.+++.+|+..+++
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~-m~~t~l~l~Ev~~~~~~~~~~~~~a~~~LG~~g~~i 82 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWAL-MCYTALLLLEVYQHVPADTGLGTLAKRYLGRYGQWL 82 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCCCCCCHHHHHHHHhChHHHHH
Confidence 567788899999999 889999999998887777666666665 888899999999999887789999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHhccc-cccchHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHH
Q 044788 123 MGSWKFLSGVINLASYPILCIDYLKLVFPI-FASGFSHYLAIFVVTLVLSFLNYTGLAIVGYTAVTLGVVSLIPFLFLTV 201 (483)
Q Consensus 123 ~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~~~~~~i 201 (483)
.+..+++.......+|..+.++.+...++. .+.+.+.....+.+.+....+.+.|.|...|+++.+...+++.++....
T Consensus 83 ~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~~i~~~~~~l~F~~~~~~iv~~g~~~v~~~n~~L~~~~ii~~~~~~~ 162 (403)
T PRK15132 83 TGFSMMFLMYALTAAYISGAGELLASSISDWTGISMSPTAGVLLFTLVAGGVVCVGTSSVDLFNRFLFSAKIIFLVVMLA 162 (403)
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988888889999977777666543 1222234456666667777788889999999999999999988888888
Q ss_pred HHhcccccccccccCCCCCCCchHHHHHHHHHHhcchHhhhhhhhhccCcCcchHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 044788 202 IAIPKIDSIRWISLGQNGVPKNWRLFFNTLFWNLNFWDNASTLAGEVEQPQRTFPKALFSAGLLTCVAYLLPLLAATGAI 281 (483)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~p~r~~p~a~~~~~~~~~~~y~l~~~~~~~~~ 281 (483)
...++.+.+++...+.. .......++..+++|.-...++++....++-+|+.+|+++.+..+..++|++...++.+..
T Consensus 163 ~l~p~~~~~~L~~~~~~--~~~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~~~~~k~i~~Gs~i~li~yl~W~~~~lg~l 240 (403)
T PRK15132 163 LMMPHIHKVNLLTLPLQ--QGLALSAIPVIFTSFGFHGSVPSIVSYMGGNIRKLRWVFIIGSAIPLVAYIFWQLATLGSI 240 (403)
T ss_pred HHHHhcCHHHHhcCCcc--ccHHHHHHHHHHHHhhCCcccHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 88888888887643221 1124556677789999999999999998877788999999999999999999999999999
Q ss_pred CCCCCC----cc---ccHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCCCchhhhccCCCCCC
Q 044788 282 PLDQQN----WV---DGYFAEVAEIIAGKWLKICIEIGACLSIIGLYEAQLSNCAYQILGMTNLGLLPKVFGSRSSWFHT 354 (483)
Q Consensus 282 ~~~~~~----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~~~~~~~~~~~ 354 (483)
|.++.. ++ ++.+..+.+....++...++.+...++..+|..+...+....+.++-+.+ .+++.+.
T Consensus 241 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~~--------~~~~~r~ 312 (403)
T PRK15132 241 DSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQRR--------NTVGGRL 312 (403)
T ss_pred CHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--------ccccCCc
Confidence 877532 11 13455666666788888899999999999999888887777666654321 1111122
Q ss_pred CHHHHHHHHHHHHHHHhcC---HHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCCCCCcccCchhHHHHHHHH
Q 044788 355 PWVGIFISTLIALTVSYMD---FTNIISCVNFL-YSLGMLLEFASFLWLRKKLPATKRPFRVPMEMLGLIFMCI 424 (483)
Q Consensus 355 P~~ai~~~~i~~~~~~~~~---~~~l~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 424 (483)
. ..++..+..+++.+.. |....+..... ..+.++++.....+.|++ + .+++||.|+......++.+
T Consensus 313 ~--~~~l~flppli~a~~~P~~F~~al~~aG~~~ail~~ilP~~m~~~~r~~-~-~~~~y~v~gg~~~~~~v~~ 382 (403)
T PRK15132 313 Q--TGLITFLPPLAFALFYPRGFVMALGYAGVALAVLALLLPSLLVWQSRKQ-N-PQAGYRVKGGRPALALVFL 382 (403)
T ss_pred h--hehhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-C-CCCCccCCCChHHHHHHHH
Confidence 2 2333444444444332 44344444432 233333333344333332 2 1457999888764443333
No 47
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.85 E-value=3.7e-19 Score=174.39 Aligned_cols=292 Identities=13% Similarity=0.102 Sum_probs=225.2
Q ss_pred hhHHHhhhhhhcc-cccCchhhHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-CChHHHhHHHHhCChhHHHH
Q 044788 46 LPLIFLIYFEVAG-GPYGEEPAVGAAGPLFAILGFLIFPFIWSIPEALVTAELATTFPG-NGGYVIWAHHAFGPFWGSLM 123 (483)
Q Consensus 46 ~~~~~~~i~~~iG-g~~~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~l~~~el~~~~p~-~Gg~y~~~~~~~g~~~g~~~ 123 (483)
.......+|+.+| |++.+|...++.|....+++.+++..+ +...+..+.|.....|. ..+.++++++.+|+..|++.
T Consensus 6 ~~w~~~l~gt~IGaGiL~LP~~ag~~G~i~~li~~l~~~pl-~~~~~~ll~~~~l~~~~p~~~i~~~~~~~fGk~~G~ii 84 (397)
T TIGR00814 6 TGWMLGLYGTAIGAGVLFLPIQAGLGGLWVLVLMAIIAYPL-TYFGHRALARFLLSSKNPCEDITEVVEEHFGKNWGILI 84 (397)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCCCCCHHHHHHHHcCHHHHHHH
Confidence 3556777888889 889999987767665555555544444 45555566676555555 67899999999999999999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHhccc-cc-cchHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHH
Q 044788 124 GSWKFLSGVINLASYPILCIDYLKLVFPI-FA-SGFSHYLAIFVVTLVLSFLNYTGLAIVGYTAVTLGVVSLIPFLFLTV 201 (483)
Q Consensus 124 g~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~-~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~~~~~~i 201 (483)
++.|++........++....+.+.+++.. .. +..++...++++.++...++..|.|...|++.++....++.++...+
T Consensus 85 ~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~~~~~p~~~i~~lilv~il~~iv~~G~~~i~r~~~il~~~~ii~l~~l~~ 164 (397)
T TIGR00814 85 TLLYFFAIYPILLIYSVAITNDSASFLVNQLGTAPPLRGLLSLALILILVAIMSFGEKLLFKIMGPLVFPLVLILVLLSL 164 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888888888777776543 21 22345567777778878999999999999999999999999888888
Q ss_pred HHhcccccccccccCCCC-CCCchHHHHHHHHHHhcchHhhhhhh----hhccCc---CcchHHHHHHHHHHHHHHHHHH
Q 044788 202 IAIPKIDSIRWISLGQNG-VPKNWRLFFNTLFWNLNFWDNASTLA----GEVEQP---QRTFPKALFSAGLLTCVAYLLP 273 (483)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~G~e~~~~~~----~E~k~p---~r~~p~a~~~~~~~~~~~y~l~ 273 (483)
..+++.+.+++...+..+ .........+..+|+|.|+|.+++++ +|.+|| +|+..|++..+..+..++|++.
T Consensus 165 ~lip~~~~~~L~~~p~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~~~y~~~ 244 (397)
T TIGR00814 165 YLIPHWNGANLTTFPSFNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLILVATVMFF 244 (397)
T ss_pred HHHHHcCHHHHhcCCcccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888876443221 11234455667899999999999998 666655 5778999999999999999999
Q ss_pred HHHHhhccCCCCCC----ccccHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhc
Q 044788 274 LLAATGAIPLDQQN----WVDGYFAEVAEIIAGKWLKICIEIGACLSIIGLYEAQLSNCAYQILGMTNL 338 (483)
Q Consensus 274 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d 338 (483)
.+.+.+..++++.. ++-+.+..+.+...++....+..+...++..+|..+...+....+..+-++
T Consensus 245 ~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~~~ 313 (397)
T TIGR00814 245 VFSCVLSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIVLN 313 (397)
T ss_pred HHHHhccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 99999998887642 222345556666778888888888888999999999988888777777643
No 48
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=99.81 E-value=2.3e-16 Score=156.14 Aligned_cols=287 Identities=20% Similarity=0.183 Sum_probs=234.9
Q ss_pred cccccccchhHHHhhhhhhcc-cccCchhhHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC-hHHHhHHHHh
Q 044788 38 VTSKKLSLLPLIFLIYFEVAG-GPYGEEPAVGAAGPLFAILGFLIFPFIWSIPEALVTAELATTFPGNG-GYVIWAHHAF 115 (483)
Q Consensus 38 ~~~r~l~~~~~~~~~i~~~iG-g~~~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~l~~~el~~~~p~~G-g~y~~~~~~~ 115 (483)
..+++-+..+.+....++.+| |++.+|.+...+|-...++..++.+.+ +....+++.|...+.|+.. +.++-+++.+
T Consensus 4 ~~~~~~s~~~~vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~-t~~s~~~l~~~~~~~~~~~~~~~~~~~~~~ 82 (415)
T COG0814 4 SMKKTSSDLGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPL-TYLSLLLLLEALLSSPNGKASITSLVEDYL 82 (415)
T ss_pred cccCCcchHHHHHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCCCcccHHHHHHHHh
Confidence 344566788899999999999 899999999999987788878888887 9999999999999999984 9999999999
Q ss_pred CChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhccc-ccc-chHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHH
Q 044788 116 GPFWGSLMGSWKFLSGVINLASYPILCIDYLKLVFPI-FAS-GFSHYLAIFVVTLVLSFLNYTGLAIVGYTAVTLGVVSL 193 (483)
Q Consensus 116 g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~-~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i 193 (483)
||.++++.+..+.+.......++....++.+...+++ ... +.++.+..+++...+..+.+.|.+..-|.+..+...++
T Consensus 83 G~~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~~~~r~~~~lif~~~~~~l~~~~~~~~lk~ts~l~~~~v 162 (415)
T COG0814 83 GKKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGLNPLPRKLGSLIFALVLAFLSWLGTLAVLKITSLLVFGKV 162 (415)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998875 222 26778888888888888999999999999999999999
Q ss_pred HHHHHHHHHHhcccccccccccCCC--CCCCchHHHHHHHHHHhcchHhhhhhhhhccCcCcc-hHHHHHHHHHHHHHHH
Q 044788 194 IPFLFLTVIAIPKIDSIRWISLGQN--GVPKNWRLFFNTLFWNLNFWDNASTLAGEVEQPQRT-FPKALFSAGLLTCVAY 270 (483)
Q Consensus 194 ~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~p~r~-~p~a~~~~~~~~~~~y 270 (483)
+.+++.....+++.+..+....+.. .....+...++..+++|.+...++.+..|+|+++++ ++|++..+..+..++|
T Consensus 163 ~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~~~~~k~~~~~~~~~~vly 242 (415)
T COG0814 163 IYLVLLVVYLIPHWNPANLFALPSASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKKAVRKAILIGSLIALVLY 242 (415)
T ss_pred HHHHHHHHHHhcccCHHHHhcccccchhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchhHHHHHHHHHHHHHHHHHH
Confidence 9999999888888776665443222 113455666778899999999999999999988877 9999999999999999
Q ss_pred HHHHHHHhhccCCCCC-------CccccHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHh
Q 044788 271 LLPLLAATGAIPLDQQ-------NWVDGYFAEVAEIIAGKWLKICIEIGACLSIIGLYEAQL 325 (483)
Q Consensus 271 ~l~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (483)
....+......+.+.- .+.+.......+....+.......+...++..++..+..
T Consensus 243 i~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~ 304 (415)
T COG0814 243 ILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATSFLGVY 304 (415)
T ss_pred HHHHHHHHHhcCcccHHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhCch
Confidence 9999999998887631 122223444444455666777777777777776654444
No 49
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.81 E-value=1.3e-16 Score=155.11 Aligned_cols=291 Identities=13% Similarity=0.078 Sum_probs=227.8
Q ss_pred hHHHhhhhhhcc-cccCchhhHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccC-CCCChHHHhHHHHhCChhHHHHH
Q 044788 47 PLIFLIYFEVAG-GPYGEEPAVGAAGPLFAILGFLIFPFIWSIPEALVTAELATTF-PGNGGYVIWAHHAFGPFWGSLMG 124 (483)
Q Consensus 47 ~~~~~~i~~~iG-g~~~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~l~~~el~~~~-p~~Gg~y~~~~~~~g~~~g~~~g 124 (483)
......+|+.+| |++.+|-..+.+|....++..+++..+ +...++.+.|..... |...+.-+.+++.+|+..+.+.+
T Consensus 23 ~W~l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~-m~~s~l~L~e~~L~~~~~~~~i~~v~~~~lG~~g~~i~~ 101 (443)
T PRK13629 23 TWTLGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPI-AFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVIT 101 (443)
T ss_pred hHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHH-HHHHHHHHHHHHHccCCCCCCHHHHHHHHcChhHHHHHH
Confidence 444677788889 889999999999887777777777766 888889999999998 54556777999999999999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHhcc-cccc-chHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHH
Q 044788 125 SWKFLSGVINLASYPILCIDYLKLVFP-IFAS-GFSHYLAIFVVTLVLSFLNYTGLAIVGYTAVTLGVVSLIPFLFLTVI 202 (483)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~-~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~~~~~~i~ 202 (483)
..|++........+.....+.+.+++. +.+. +.+++..++++...+..+.+.|.|...|++.++...+++.++...+.
T Consensus 102 ilYff~ly~ll~aY~~~itn~l~sfl~~ql~~~~~~r~l~slifv~~l~~iv~~G~~~v~kv~~~Lv~~~i~~l~~l~~~ 181 (443)
T PRK13629 102 FLYFFAICPLLWIYGVTITNTFMTFWENQLGFAPLNRGFVALFLLLLMAFVIWFGKDLMVKVMSYLVWPFIASLVLISLS 181 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998888888888777777776532 2221 34688889999999999999999999999999999999999999999
Q ss_pred HhcccccccccccCC----CCCCCc----hHHHHHHHHHHhcchHhhhhhhhh----cc-----C-cCcchHHHHHHHHH
Q 044788 203 AIPKIDSIRWISLGQ----NGVPKN----WRLFFNTLFWNLNFWDNASTLAGE----VE-----Q-PQRTFPKALFSAGL 264 (483)
Q Consensus 203 ~~~~~~~~~~~~~~~----~~~~~~----~~~~~~~~~~a~~G~e~~~~~~~E----~k-----~-p~r~~p~a~~~~~~ 264 (483)
.+++.+.+++...+. .....+ ....++..+++|.-...++++... .+ | .+|+..|++..+..
T Consensus 182 LiP~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~rii~~gs~ 261 (443)
T PRK13629 182 LIPYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIISRASM 261 (443)
T ss_pred HHHHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHHHHHHHHHHH
Confidence 999999888764332 100111 334456667777766666665554 32 2 24779999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCCC---ccccH-HHHHHHHHcc---------hHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 044788 265 LTCVAYLLPLLAATGAIPLDQQN---WVDGY-FAEVAEIIAG---------KWLKICIEIGACLSIIGLYEAQLSNCAYQ 331 (483)
Q Consensus 265 ~~~~~y~l~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~sR~ 331 (483)
+..++|++..+.+.+..|+++.. ..+.+ +..+++...+ +....+..+...++..+|..+...+..-.
T Consensus 262 i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlGv~LGl~E~ 341 (443)
T PRK13629 262 LMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFFGHYLGTLEG 341 (443)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988743 23344 7777777766 77888888888889999999888888777
Q ss_pred HHHhhhc
Q 044788 332 ILGMTNL 338 (483)
Q Consensus 332 l~~~a~d 338 (483)
+..+.++
T Consensus 342 l~gl~~~ 348 (443)
T PRK13629 342 LNGLILK 348 (443)
T ss_pred HHHHHHH
Confidence 7777653
No 50
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=99.75 E-value=8.2e-17 Score=156.68 Aligned_cols=399 Identities=15% Similarity=0.148 Sum_probs=276.5
Q ss_pred ccccccccchhHHHh-hhhhhcccc--cCchhhHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-CCChHHHhHH
Q 044788 37 TVTSKKLSLLPLIFL-IYFEVAGGP--YGEEPAVGAAGPLFAILGFLIFPFIWSIPEALVTAELATTFP-GNGGYVIWAH 112 (483)
Q Consensus 37 ~~~~r~l~~~~~~~~-~i~~~iGg~--~~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~l~~~el~~~~p-~~Gg~y~~~~ 112 (483)
.+.+-+++||+-++. ++-++.|-+ .-++..++++|....++...+...+ .+.++++-.-++++-. ++||.|..++
T Consensus 24 ~~~~v~fg~~~gv~~~cmlni~gv~lflrl~wivgqagi~~~~~ii~~~~~v-t~it~lSa~~I~t~~~vk~Gg~yflis 102 (643)
T KOG2083|consen 24 TKGPVLFGWWDGVFVRCMLNIFGVILFLRLGWIVGQAGIGNSVLIIGLTTVV-TLITVLSAIAIVTRGQVKSGGVYFLIS 102 (643)
T ss_pred cCCceEEeeeehhhhhhhHHHHHHHHhhhhhheeecchhhhhHHHHHHHHHH-HHHHHHhHheeeecceeccCcEEEEEE
Confidence 344456888877665 555666733 3456667788876555555555555 7788888888887765 4799999999
Q ss_pred HHhCChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHH
Q 044788 113 HAFGPFWGSLMGSWKFLSGVINLASYPILCIDYLKLVFPIFASGFSHYLAIFVVTLVLSFLNYTGLAIVGYTAVTLGVVS 192 (483)
Q Consensus 113 ~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~ 192 (483)
|.+||..|--.|..+.++....++++..++++.+..++..... +..--++.+..++...+|..|+++..|.|.++..+.
T Consensus 103 ~slg~efggsigiIy~f~~aVa~am~~vgfaEsv~~l~~~~s~-~~i~gi~~vt~~ill~i~~ag~~w~~k~q~~ll~il 181 (643)
T KOG2083|consen 103 RSLGPEFGGSIGIIYAFANAVATAMYVVGFAESVAHLFETESK-EMIDGIGSVTVLILLAINVAGVEWEAKLQIVLLLIL 181 (643)
T ss_pred ecccccccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhccH-HHhcchhHHHHHHHHHhhhccchhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999888765421 112236667777788899999999999998888877
Q ss_pred HHHHHHHHHHHhcccc----------cccccc-cCCCC-CCCchHHHHHHHHHHhcchHhhhhhhhhccCcCcchHHHHH
Q 044788 193 LIPFLFLTVIAIPKID----------SIRWIS-LGQNG-VPKNWRLFFNTLFWNLNFWDNASTLAGEVEQPQRTFPKALF 260 (483)
Q Consensus 193 i~~~~~~~i~~~~~~~----------~~~~~~-~~~~~-~~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~p~r~~p~a~~ 260 (483)
++.+.-+.+..+...+ .+.+.+ ..++- +..+|-..|...+-+.+|.-+..+++++.|+|++++|++.+
T Consensus 182 ~iai~~f~~gs~~~~~~~~~g~~~~~a~~~~~n~~~~~~~~~tfF~vf~vfFpaatgilaG~nisGdL~~Pq~~IP~GaL 261 (643)
T KOG2083|consen 182 LIAIADFLVGSFFSPNEFSSGFFGYRADIFVENLNPDIDPGYTFFSVFAVFFPAATGILAGANISGDLKDPQKAIPLGAL 261 (643)
T ss_pred HHHHHHhhhhhccChhhhcccccccchhhcccCCCCCcCCCCceEeeeeeecchhhhhhccccccCCCCCchhhcccchh
Confidence 7766655555443221 001111 11110 12234444556667889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCC------CCcccc-----HHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 044788 261 SAGLLTCVAYLLPLLAATGAIPLDQ------QNWVDG-----YFAEVAEIIAGKWLKICIEIGACLSIIGLYEAQLSNCA 329 (483)
Q Consensus 261 ~~~~~~~~~y~l~~~~~~~~~~~~~------~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 329 (483)
.+......+|+..........-.+. ....+. -..++.+.. ....-....+...+..++..+.+.++.
T Consensus 262 ~Ai~vst~~yl~~i~~~Ga~~~r~~~~~~~~~~~~~c~~gl~~~~qv~smv--S~~~Pl~~AGi~~a~LSsalsslVsap 339 (643)
T KOG2083|consen 262 LAIGVSTLLYLIFIADLGATPVRDALENWNDTSTKSCPIGLTNYLQVMSMV--STFGPLITAGILAAELSSALSSLVSAP 339 (643)
T ss_pred hhhhhhhhhhhhhhhhcccHHHHHHhccchhhccCCCccchHHHHHHHHhH--hhcccchhhHHHHHHHHHHHHHHHhhh
Confidence 9999999999877654433221111 111100 111222211 111223445566677777888899999
Q ss_pred HHHHHhhhcCCCc--hhhhccCCCCCCCHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 044788 330 YQILGMTNLGLLP--KVFGSRSSWFHTPWVGIFISTLIALTVS-YMDFTNIISCVNFLYSLGMLLEFASFLWLRKKLPAT 406 (483)
Q Consensus 330 R~l~~~a~dg~lP--~~~~~~~~~~~~P~~ai~~~~i~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 406 (483)
++++++++|...| .++.|-..+.+.|.++..+....+.... ....+.+..+.+..++..|.....+++.-+...++.
T Consensus 340 ~V~QaL~kd~~yp~i~~f~KgyGkn~~Plrg~~l~~~~av~fi~igeln~iapiis~FfL~syAlinf~~f~aSl~~s~~ 419 (643)
T KOG2083|consen 340 KVLQALCKDSLYPSILFFAKGYGKNKEPLRGYLLTFLTAVSFIAIGELNIIAPIISNFFLLSYALINFSCFHASLAISEG 419 (643)
T ss_pred HHHHHHHhcCCCccHHHHHccCCccccchHHHHHHHHhHheeEEecccceeccchhhhhhhhhhccchhhhhhhhccccc
Confidence 9999999999999 5788877778999999999888887766 566888888888899999999988888777666555
Q ss_pred CCC-cccCchhHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 044788 407 KRP-FRVPMEMLGLIFMCIIPSGFLVYVMVVATKMVCFV 444 (483)
Q Consensus 407 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (483)
+|| ++... .++++++.+.++..++...|....+
T Consensus 420 wRp~f~~yn-----~wVSllGalKOG~ImFli~w~aaLi 453 (643)
T KOG2083|consen 420 WRPSFKFYN-----AWVSLLGALLCLAIMFLISWWAALI 453 (643)
T ss_pred cCchhhhHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 553 34322 2344555555555555544444433
No 51
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=99.67 E-value=5e-14 Score=136.13 Aligned_cols=285 Identities=18% Similarity=0.176 Sum_probs=229.4
Q ss_pred cccchhHHHhhhhhhcc-cccCchhhHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCChHHHhHHHHhCChhH
Q 044788 42 KLSLLPLIFLIYFEVAG-GPYGEEPAVGAAGPLFAILGFLIFPFIWSIPEALVTAELATTFPGNGGYVIWAHHAFGPFWG 120 (483)
Q Consensus 42 ~l~~~~~~~~~i~~~iG-g~~~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~l~~~el~~~~p~~Gg~y~~~~~~~g~~~g 120 (483)
|+|..|...+.+..++| +....|....+.+. ..+++.+++++. .+...+.+..+.+++|+. +.+++.++.+||..|
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~~-d~Wi~~ll~~~~-~l~~~~l~~~l~~~~p~~-~l~~~~~~~~Gk~lg 77 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILAEQAG-DAWISVLLGGLI-GLLLALLIYYLLKRFPGK-TLVEISEKLFGKWLG 77 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHH-HHHHHHHHHHHHHHCCCC-CHHHHHHHHhCcHHH
Confidence 46788999999999988 77888887766332 344556666665 788899999999999997 899999999999999
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHh-ccccccchHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHH
Q 044788 121 SLMGSWKFLSGVINLASYPILCIDYLKLV-FPIFASGFSHYLAIFVVTLVLSFLNYTGLAIVGYTAVTLGVVSLIPFLFL 199 (483)
Q Consensus 121 ~~~g~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~~~~~ 199 (483)
.+.+..+.+.+....+......++.++.. +|+ .|.+.+...+.+........|.+..+|.+.......++.++..
T Consensus 78 ~ii~~~~~l~~l~~~~~~lr~~~~~i~~~~lp~----TP~~~i~~~~ll~~~y~a~~G~e~i~R~~~~~~~~~~i~~~~i 153 (320)
T PF03845_consen 78 KIINLLYILYFLLISALVLREFSEFIKTYLLPE----TPIWVIILLFLLVAAYAARKGIEVIARVAEILFPIFLILLLLI 153 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc----CCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999876 454 6788888888888999999999999998888888888877777
Q ss_pred HHHHhcccccccccccCCCCCCCchHHHHHHHHHHhcchHhhhhhhhhccCcCcchHHHHHHHHHHHHHHHHHHHHHHhh
Q 044788 200 TVIAIPKIDSIRWISLGQNGVPKNWRLFFNTLFWNLNFWDNASTLAGEVEQPQRTFPKALFSAGLLTCVAYLLPLLAATG 279 (483)
Q Consensus 200 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~p~r~~p~a~~~~~~~~~~~y~l~~~~~~~ 279 (483)
......+.|.++..|....+.. ..........+.|.|.|....+.+.+||| |+..|....+...++++|.+..+...+
T Consensus 154 ~~~~~~~~~~~~l~P~~~~g~~-~i~~~~~~~~~~~~~~~~~l~~~p~~~~~-~~~~k~~~~~~~~~~~~~~~~~~~~i~ 231 (320)
T PF03845_consen 154 LLLSIPNIDWDNLLPVLESGIK-PILKGSLVISFPFGGIEILLFLFPFVKDK-KKLKKSLLIAILISGLFLLFIIFITIG 231 (320)
T ss_pred HHHhcccCCHHHeeCcccCChH-HHHHHHHHHHHHHHHHHHHHHHHHHcCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777788888888877655311 22222444567899999999999999998 557899999999999999999999999
Q ss_pred ccCCCCCCccccHHHHHHHHHcch----HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHh
Q 044788 280 AIPLDQQNWVDGYFAEVAEIIAGK----WLKICIEIGACLSIIGLYEAQLSNCAYQILGM 335 (483)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ 335 (483)
..++++.+....|..++.+...-+ -...++......+.+......++..++.+..+
T Consensus 232 vfG~~~~~~~~~P~~~~~~~i~i~~fieRld~~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 291 (320)
T PF03845_consen 232 VFGPELAKKLTYPVLELARSIEIGDFIERLDSIFILIWIIGIFIKISLYLYAASEGLSQL 291 (320)
T ss_pred hcCHHHHhceecHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988888888988888877522 34555566666667777777777777665543
No 52
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.61 E-value=6.8e-13 Score=130.49 Aligned_cols=346 Identities=19% Similarity=0.210 Sum_probs=219.0
Q ss_pred ccccccccchhHHHhhhhhhcc-cccCchhhHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCh-----HHHh
Q 044788 37 TVTSKKLSLLPLIFLIYFEVAG-GPYGEEPAVGAAGPLFAILGFLIFPFIWSIPEALVTAELATTFPGNGG-----YVIW 110 (483)
Q Consensus 37 ~~~~r~l~~~~~~~~~i~~~iG-g~~~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~l~~~el~~~~p~~Gg-----~y~~ 110 (483)
...+|+-++++..+-.++.++| |..++|.++.+.|..+-+...++.+++ ...+++.+.++-+..+...| +-+.
T Consensus 32 ~~~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~ii-t~YT~~LL~~~~~~~~~~~~~r~~~Y~dl 110 (437)
T KOG1303|consen 32 ITPSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAII-TLYTATLLSRCWEMHEAVPGKRRYRYPDL 110 (437)
T ss_pred cccCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHH-HHHHHHHHHHHHHhccCCCCccCCChHHH
Confidence 3456779999999999999999 889999999999997756667777776 88888888888888888777 7789
Q ss_pred HHHHhCChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhccccccc---h--HHHHHHHHHHHHHHHHHhhchhHHHHHH
Q 044788 111 AHHAFGPFWGSLMGSWKFLSGVINLASYPILCIDYLKLVFPIFASG---F--SHYLAIFVVTLVLSFLNYTGLAIVGYTA 185 (483)
Q Consensus 111 ~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~--~~~~~~~~~~~~~~~i~~~g~~~~~~~~ 185 (483)
++++||++.-.++++...+.....+..+....++-+..+++....+ . ..+.+... .+.+...-+...+...+..
T Consensus 111 ~~~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~~l~~~~f~iif~-~i~~~~s~lp~~~~l~~~S 189 (437)
T KOG1303|consen 111 GQAAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDNSLDKQYFIIIFG-LIVLPLSQLPNFHSLSYLS 189 (437)
T ss_pred HHHHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccceehhhhHH-HHHHHHHHCCCcchhHHHH
Confidence 9999998888889999999988888999999999998887643211 1 11222111 1111222244445555566
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccccccccCCCC-CCCch-HHHHHHHHHHhcchHhhhhhhhhccCcCcchHHHHHHHH
Q 044788 186 VTLGVVSLIPFLFLTVIAIPKIDSIRWISLGQNG-VPKNW-RLFFNTLFWNLNFWDNASTLAGEVEQPQRTFPKALFSAG 263 (483)
Q Consensus 186 ~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~a~~G~e~~~~~~~E~k~p~r~~p~a~~~~~ 263 (483)
....+..+.........+..+.-..+....+... .+... ...+....|+|.|....++.-..+|+|+| ++|+.+.+.
T Consensus 190 ~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~f~a~g~iaFaf~gH~v~peIq~tMk~p~~-f~~~~lis~ 268 (437)
T KOG1303|consen 190 LVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDLGTIPTVFTALGIIAFAYGGHAVLPEIQHTMKSPPK-FKKALLISY 268 (437)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccCCcccCcccCCCCcchhhhhhheeeeecCCeeeeehHhhcCCchh-hhhHHHHHH
Confidence 5555555555444445555443222111111110 01111 23444567999999999999999999977 999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCccccHHHHHHHHH-cchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcC-CC
Q 044788 264 LLTCVAYLLPLLAATGAIPLDQQNWVDGYFAEVAEII-AGKWLKICIEIGACLSIIGLYEAQLSNCAYQILGMTNLG-LL 341 (483)
Q Consensus 264 ~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg-~l 341 (483)
.+++.+|+..++..+.+.+++..+ ++.... .+.|.....++++.+.++++..-.. .-+++..+.. ..
T Consensus 269 ~~~~~~y~~vai~GY~aFG~~~~~-------~il~s~~~p~~~~~~ani~i~~h~i~s~~i~a----~pl~~~~E~~~~~ 337 (437)
T KOG1303|consen 269 IIVTFLYFPVAIIGYWAFGDSVPD-------NILLSLQPPTWLIALANILIVLHLIGSYQIYA----QPLFDVVEKLIGV 337 (437)
T ss_pred HHHHHHHHHHHHhhhhhhccccch-------hhhhcccCchhHHHHHHHHHHHHHhhhhhhhh----cchHHHHHHHhcc
Confidence 999999999999999888765332 122222 3667777777777777776654332 2233332211 11
Q ss_pred c-hhhhc-cCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHH--HHHHHHHHHHHHH
Q 044788 342 P-KVFGS-RSSWFHTPWVGIFISTLIALTVSYMDFTNIISCVNFL--YSLGMLLEFASFL 397 (483)
Q Consensus 342 P-~~~~~-~~~~~~~P~~ai~~~~i~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~ 397 (483)
+ +.+.+ ... .+.=.+..++.....+...+..|+.+.++.+.. ....+.++++..+
T Consensus 338 ~~~~~~~~~~~-~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~yl 396 (437)
T KOG1303|consen 338 KHPDFKKRSLV-LRLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCLMYL 396 (437)
T ss_pred CCccccccccc-eeeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 11332 111 223333333333333344455666666666544 3344555444443
No 53
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.58 E-value=2.2e-12 Score=124.89 Aligned_cols=356 Identities=16% Similarity=0.134 Sum_probs=220.4
Q ss_pred ccccccchhHHHhhhhhhcc-cccCchhhHhhhChHHHHHHHHHHHHHHHHH----HHHHHHHhhccCCCC---------
Q 044788 39 TSKKLSLLPLIFLIYFEVAG-GPYGEEPAVGAAGPLFAILGFLIFPFIWSIP----EALVTAELATTFPGN--------- 104 (483)
Q Consensus 39 ~~r~l~~~~~~~~~i~~~iG-g~~~~~~~~~~~G~~~~i~~~~~~~~~~~~~----~~l~~~el~~~~p~~--------- 104 (483)
.++..+..+...=-.-.++| |.+++|.+...+|.....+.-.+.+++ .+. ..-|--+++++...+
T Consensus 43 ~~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l-~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~ 121 (449)
T KOG1304|consen 43 REHPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFL-CTYCMHLLVKCSHKLCKRFRGPSLDYAETAE 121 (449)
T ss_pred CCCCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHhcCCccccHHHHHH
Confidence 34456677777767777789 889999999998876544444444433 222 223445666664221
Q ss_pred ---ChHHHhHHHHhCChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHH-hhchh
Q 044788 105 ---GGYVIWAHHAFGPFWGSLMGSWKFLSGVINLASYPILCIDYLKLVFPIF-ASGFSHYLAIFVVTLVLSFLN-YTGLA 179 (483)
Q Consensus 105 ---Gg~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~i~-~~g~~ 179 (483)
-+.|.| -|.+||...+++-....+.+...+..+....++-++++.+.. ...+...+...+.......+| .+.+|
T Consensus 122 ~a~~~~~~~-~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~~~~~s~~~~i~~~~~~~lll~~Ir~Lk 200 (449)
T KOG1304|consen 122 SAMEGGPGW-LRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHSPGVLSVRLYILIQLPPLLLLNLIRNLK 200 (449)
T ss_pred HHHcCCcHH-HHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccCCCCccHHHHHHHHHHHHHHHHHHHhhH
Confidence 122234 678889999999999999999999999999999998887632 223333333333333333333 45666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCCCCchHHHHHHHHHHhcchHhhhhhhhhccCcCcchH---
Q 044788 180 IVGYTAVTLGVVSLIPFLFLTVIAIPKIDSIRWISLGQNGVPKNWRLFFNTLFWNLNFWDNASTLAGEVEQPQRTFP--- 256 (483)
Q Consensus 180 ~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~p~r~~p--- 256 (483)
..+-+..+.-++.++.++++....+.... ...+.+.-+...+|.-++..++|+|-|...+-.+-++||+| +++|
T Consensus 201 ~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~--~~~~~~~~~~~~~~~lf~GtaifafEGig~VLPlEn~Mk~P-~~F~g~~ 277 (449)
T KOG1304|consen 201 ILSPFSLFANVFILVGLAIIMYYLVQDLP--PTSDLPAVTGWSGLPLFFGTAIFAFEGIGMVLPLENSMKKP-QKFPGPF 277 (449)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHhccC--CccccccccchhhhHHHHHHHHHHhccceEEEehhhcccCh-hhcCCcc
Confidence 66666655555555555555444433322 22222221124467777888999999999999999999999 5588
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCCCc--cccHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 044788 257 KALFSAGLLTCVAYLLPLLAATGAIPLDQQNW--VDGYFAEVAEIIAGKWLKICIEIGACLSIIGLYEAQLSNCAYQILG 334 (483)
Q Consensus 257 ~a~~~~~~~~~~~y~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~ 334 (483)
+..-.++.+++++|....+..+...+++.... -+-|- .++...+-+...++.+-+..-.++-.-++++.
T Consensus 278 gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP~---------~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~ 348 (449)
T KOG1304|consen 278 GVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLPQ---------EILSQTVKLLLAIAIFLTYPLQFYVPIEIIEP 348 (449)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCCc---------cHHHHHHHHHHHHHHHHcCchhhhhhHHHHHH
Confidence 99999999999999999999999888764321 11121 23333444455555555555556656665554
Q ss_pred hhhcCCCchhhhccCCCC--CCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccc
Q 044788 335 MTNLGLLPKVFGSRSSWF--HTPWVGIFISTLIALTVSYMDFTNIISCVNFLYSLGMLLEFASFLWLRKKLPATKRPFRV 412 (483)
Q Consensus 335 ~a~dg~lP~~~~~~~~~~--~~P~~ai~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 412 (483)
- +.+++++ +|++ +.-.+..++....++.....+++.++++.+........+...+++-+.-..++.+++++.
T Consensus 349 ~-----i~~k~~~-~~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~liel~~~~~~~~~~~~~ 422 (449)
T KOG1304|consen 349 G-----IRKKFSE-NRKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLALIFPPLIELITFYPEGKGRFMW 422 (449)
T ss_pred h-----HHHhcCc-chhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHHHHHHHhcccccCceeh
Confidence 3 3333331 1101 112222333333333334677888888888777777777777777777777666555554
Q ss_pred Cc
Q 044788 413 PM 414 (483)
Q Consensus 413 ~~ 414 (483)
..
T Consensus 423 ~~ 424 (449)
T KOG1304|consen 423 KL 424 (449)
T ss_pred HH
Confidence 33
No 54
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=99.54 E-value=4.8e-11 Score=109.42 Aligned_cols=268 Identities=13% Similarity=0.101 Sum_probs=189.9
Q ss_pred hHHHhhhhhhcccccCchhhHhh-hCh--HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCChHHHhHHHHhCChhHHHH
Q 044788 47 PLIFLIYFEVAGGPYGEEPAVGA-AGP--LFAILGFLIFPFIWSIPEALVTAELATTFPGNGGYVIWAHHAFGPFWGSLM 123 (483)
Q Consensus 47 ~~~~~~i~~~iGg~~~~~~~~~~-~G~--~~~i~~~~~~~~~~~~~~~l~~~el~~~~p~~Gg~y~~~~~~~g~~~g~~~ 123 (483)
...+..++.++|+.|+.++.+.+ -|+ ...+++.++.+++ ....+....++++++. +...-++.++.+||.++.+.
T Consensus 7 ~~~f~~ig~~vGAGfAsGqEi~QFF~~~G~~s~~gIivs~vl-f~~~g~vim~ig~~f~-a~~y~~~~~~v~~~~~~ki~ 84 (349)
T COG3949 7 RWAFAFIGTVVGAGFASGQEIMQFFGKYGVYSILGIILSTVL-FTLSGAVIMTIGKKFN-ATSYREILKYVSGPKFAKII 84 (349)
T ss_pred HHHHHHHHHhhcccccchHHHHHHHHHhhhhhhHHHHHHHHH-HHHHHHHHHHHHHHhc-ccchHHHHHHHhhHHHHHHH
Confidence 45566778889999999998877 333 2478888898888 7777888999999994 55788999999999999998
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhc-hhHHHHHHHHHHHHHHHHHHHHHHH
Q 044788 124 GSWKFLSGVINLASYPILCIDYLKLVFPIFASGFSHYLAIFVVTLVLSFLNYTG-LAIVGYTAVTLGVVSLIPFLFLTVI 202 (483)
Q Consensus 124 g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g-~~~~~~~~~~~~~~~i~~~~~~~i~ 202 (483)
-....+.....+.....+.++.+.+.++ .|.|+-+++++........++ .+..-+++.+.+.+.++.+......
T Consensus 85 d~~iif~lf~~~vVM~AGags~~~e~~~-----lP~wiGali~i~~v~i~lfl~~vegi~tvn~iI~P~LIi~l~~v~~~ 159 (349)
T COG3949 85 DIIIIFFLFSTAVVMLAGAGSLLEEMFG-----LPYWIGALIIILLVLILLFLGRVEGIITVNGIITPFLIIILVLVTLS 159 (349)
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHhC-----ccHHHHHHHHHHHHHHHHHHhcccceeeeheeHHHHHHHHHHHHHHH
Confidence 8877777666666666666667777765 367777777777777777777 8888888877777666554433333
Q ss_pred HhcccccccccccCCCCCCCchHHHH--HHHHHHhcchHhhhhhhhhccCcCcchHHHHHHHHHHHHHHHHHHHHHHhhc
Q 044788 203 AIPKIDSIRWISLGQNGVPKNWRLFF--NTLFWNLNFWDNASTLAGEVEQPQRTFPKALFSAGLLTCVAYLLPLLAATGA 280 (483)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~a~~G~e~~~~~~~E~k~p~r~~p~a~~~~~~~~~~~y~l~~~~~~~~ 280 (483)
.....+.+.++..... ..+|.... +...-..........+++|+|++ |+..++-+.+-++.+++..+........
T Consensus 160 ~~f~~~~~~a~~~~~~--~~~W~~~~~~Y~alNi~~~~avLv~lg~~~~~~-~~~~~g~l~gglIlgvl~~l~nlsLi~~ 236 (349)
T COG3949 160 FQFTNLGNAAQIVLTK--QGNWKASAVGYGALNILVAVAVLVPLGGRMESR-KVSGIGGLIGGLILGVLLFLINLSLIAL 236 (349)
T ss_pred HHHhhccchhhhcCCc--CCChHHHHHhhhhHHHHhHhHhhhhhccccccc-chhhhhhhhhhHHHHHHHHHHHHHHHhh
Confidence 3222222222222222 23443222 22222334566678889999986 8888999998888888888888777776
Q ss_pred cCCCCCCccccHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhh
Q 044788 281 IPLDQQNWVDGYFAEVAEIIAGKWLKICIEIGACLSIIGLYEAQLSN 327 (483)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (483)
.| ++.+.+-|..++++... +....++.+...+..+++..+.+++
T Consensus 237 ~~--~v~~~dIP~l~i~~~~~-~~i~lvm~vIi~~~IytT~vg~iy~ 280 (349)
T COG3949 237 YD--KVVNYDIPLLTIAKNFS-PLIGLVMSVIIWLEIYTTTVGLIYG 280 (349)
T ss_pred cc--hhhccCCcHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54 66778889999998765 6667777777777788877777665
No 55
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=99.52 E-value=2.9e-11 Score=117.37 Aligned_cols=292 Identities=13% Similarity=0.067 Sum_probs=189.6
Q ss_pred cccccccccchhHHHhhhhhhcc--cccCchhhHhhhChHHHHHHHHHHHHHHHHHHHHHHHH--hhccCCC-------C
Q 044788 36 ITVTSKKLSLLPLIFLIYFEVAG--GPYGEEPAVGAAGPLFAILGFLIFPFIWSIPEALVTAE--LATTFPG-------N 104 (483)
Q Consensus 36 ~~~~~r~l~~~~~~~~~i~~~iG--g~~~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~l~~~e--l~~~~p~-------~ 104 (483)
+++.+++++.++.++.+.+.-+| .+-++..++..+||.+..|.|+.+-+. ++..|+| |+.+|.+ .
T Consensus 12 ~~~~~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~GGPGAiFWMWi~a~~G----matk~~E~~La~~yR~~~~~G~~~ 87 (416)
T PF01235_consen 12 KKEEEGGISPFQALCTALAGTVGTGNIAGVATAIAIGGPGAIFWMWISALLG----MATKYAEVTLAQKYREKDEDGEYR 87 (416)
T ss_pred CCCCCCCcChHHHHHHHHHhccCcchHHHHHHHHHhhchhHHHHHHHHHHHH----HHHHHHHHHHHHHheEECCCCCEe
Confidence 34555689999999999999988 356888888999999999988877543 3555555 5555543 3
Q ss_pred ChHHHhHHHHhCCh-hHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhchhHHH
Q 044788 105 GGYVIWAHHAFGPF-WGSLMGSWKFLSGVIN-LASYPILCIDYLKLVFPIFASGFSHYLAIFVVTLVLSFLNYTGLAIVG 182 (483)
Q Consensus 105 Gg~y~~~~~~~g~~-~g~~~g~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~ 182 (483)
||...|.++.+|.+ ++.+.+.+....+... ....+...++.+...++ ++.+..++++..+..++.+-|+|..+
T Consensus 88 GGP~yyi~~gl~~k~la~~fai~~~~~~~~~~~~~Q~nsi~~~~~~~f~-----i~~~~~gi~l~~l~~~vi~GGikrI~ 162 (416)
T PF01235_consen 88 GGPMYYIEKGLGSKWLAILFAIFLIIAFGIGFNMVQANSIADALSSAFG-----IPPWITGIILAILVALVIFGGIKRIA 162 (416)
T ss_pred ecHHHHHHHHhccchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcc-----ccHHHHHHHHHHHHHHHHHcchhHHH
Confidence 89999999999855 4555555544444333 44555555555555444 46677888888888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-cc--cccc-----cccCCCCCCCchHHHHH------H---HHHH---hcchHhhh
Q 044788 183 YTAVTLGVVSLIPFLFLTVIAIPK-ID--SIRW-----ISLGQNGVPKNWRLFFN------T---LFWN---LNFWDNAS 242 (483)
Q Consensus 183 ~~~~~~~~~~i~~~~~~~i~~~~~-~~--~~~~-----~~~~~~~~~~~~~~~~~------~---~~~a---~~G~e~~~ 242 (483)
++...+..++.+..++.++..+.. .+ ++.+ ..++++....+..+... + ..|+ =.|.....
T Consensus 163 ~v~~~lVP~Ma~~Yi~~~l~ii~~n~~~ip~~~~~If~~AF~~~aa~GG~~G~~i~~ai~~Gv~Rg~fSNEAG~Gsa~~a 242 (416)
T PF01235_consen 163 KVSEKLVPFMAILYILGGLIIIIINIDQIPAAFSLIFSSAFTPKAAFGGFAGSTIMMAIRQGVARGLFSNEAGLGSAPIA 242 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHcCCccchhhHHHHHHHHHHHHhhhhhhccCCCCCChhHHH
Confidence 999999988887777666554432 11 1000 01111111112222211 0 1222 23788888
Q ss_pred hhhhhccCcCcchHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCC--ccccHHHHHHHHHcchHHHHHHHHHHHHHHHHH
Q 044788 243 TLAGEVEQPQRTFPKALFSAGLLTCVAYLLPLLAATGAIPLDQQN--WVDGYFAEVAEIIAGKWLKICIEIGACLSIIGL 320 (483)
Q Consensus 243 ~~~~E~k~p~r~~p~a~~~~~~~~~~~y~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (483)
+.+.|.++|.|+=-.+++--.+-+.+.-.++.+.++..-.+.... +........++...+++...++.++.++..+++
T Consensus 243 ~a~a~~~hP~~QGl~~~~~vFiDTiiVCt~TalvIl~tG~~~~~~~~~g~~l~~~Af~~~~g~~g~~~v~i~l~lFafTT 322 (416)
T PF01235_consen 243 HAAAETDHPVRQGLVQMFEVFIDTIIVCTITALVILVTGVWSWGSGLEGAALTQAAFSTVLGSWGPYFVAIALFLFAFTT 322 (416)
T ss_pred HHHhcCCCcHHHeeeeeehHhHHHHHHHHHHHHHhhccCCCCCCCcchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 888899999886655554444444444555554444432222111 122335556666677889999999999999999
Q ss_pred HHHHhhhhhHHHHHhh
Q 044788 321 YEAQLSNCAYQILGMT 336 (483)
Q Consensus 321 ~~~~~~~~sR~l~~~a 336 (483)
..++.+...+.+.-+.
T Consensus 323 ilg~~~yge~~~~yl~ 338 (416)
T PF01235_consen 323 ILGWYYYGEKCAEYLF 338 (416)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 9999998887766654
No 56
>PLN03074 auxin influx permease; Provisional
Probab=99.50 E-value=3.1e-11 Score=121.63 Aligned_cols=224 Identities=11% Similarity=0.072 Sum_probs=130.7
Q ss_pred hhhhhcc-cccCchhhHhhhChHHHHHHHHHHHHHHHHHHHHHH----HHhhccCCCCCh--------HHHhHHHHhCCh
Q 044788 52 IYFEVAG-GPYGEEPAVGAAGPLFAILGFLIFPFIWSIPEALVT----AELATTFPGNGG--------YVIWAHHAFGPF 118 (483)
Q Consensus 52 ~i~~~iG-g~~~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~l~~----~el~~~~p~~Gg--------~y~~~~~~~g~~ 118 (483)
.....+| |++++|.++.++|....++..++.+++ ....+..+ -|...+.|+.+- .++.+.+.+||.
T Consensus 55 l~~~~vG~GILaLP~Af~~~G~v~Gii~lv~~~~l-~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~~~e~~~~~~G~~ 133 (473)
T PLN03074 55 CASNQVAQVLLTLPYSFSQLGMLSGILFQIFYGLL-GSWTAYLISVLYVEYRARKEREKVDFKNHVIQWFEVLDGLLGPY 133 (473)
T ss_pred HHHHHHhHHHHhHHHHHHHccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhccCcCCCchhHHHHHHHHHHHHhcChh
Confidence 6667778 899999999999987666666666655 55555543 456777776442 233445578998
Q ss_pred hHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHH
Q 044788 119 WGSLMGSWKFLSGVINLASYPILCIDYLKLVFPIFASGFSHYLAIFVVTLVLSFLNYTGLAIVGYTAVTLGVVSLIPFLF 198 (483)
Q Consensus 119 ~g~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~~~~ 198 (483)
++........+.....+..+....++.+..+-+..+......+..++.+.+.. .+..|..+++..+.....+...+.
T Consensus 134 ~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l~~~~~~~~~~~i~~~v~~~~~~---i~sl~~l~~~S~ig~~~tl~~av~ 210 (473)
T PLN03074 134 WKNVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVF---IPSFHNYRIWSFLGLLMTTYTAWY 210 (473)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhCCCcCCCeEEeehHHHHHHHHH---ccCHHHHHHHHHHHHHHHHHHHHH
Confidence 87777655555555444555555454444332222222222233322222222 334455554443333322222222
Q ss_pred HHHHHhcccccccccccCCCCCCCchHHHHH---HHHHHhcchHhhhhhhhhccCcCcchHHHHHHHHHHHHHHHHHHHH
Q 044788 199 LTVIAIPKIDSIRWISLGQNGVPKNWRLFFN---TLFWNLNFWDNASTLAGEVEQPQRTFPKALFSAGLLTCVAYLLPLL 275 (483)
Q Consensus 199 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~a~~G~e~~~~~~~E~k~p~r~~p~a~~~~~~~~~~~y~l~~~ 275 (483)
+.+....+.+...... .+ +.++..++. ..+|+|.|.-....+-.||||| ++.++....+...+...|+...+
T Consensus 211 i~i~~i~~~~~~~~~~---~~-~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M~~P-~~F~~~~~l~~~~v~~~y~~~~~ 285 (473)
T PLN03074 211 MTIAALSHGQVEGVKH---SG-PTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKP-QKFKYIYLAATLYVLTLTLPSAA 285 (473)
T ss_pred HHHHHHhhcCCCCCCC---CC-chhHHHHHHHHHHHHHHhcccccHHHHHHhccCh-hcccchHHHHHHHHHHHHHHHHH
Confidence 2222222222221211 11 223444443 3689999999999999999999 56999888888888888888887
Q ss_pred HHhhccCCC
Q 044788 276 AATGAIPLD 284 (483)
Q Consensus 276 ~~~~~~~~~ 284 (483)
..+...+++
T Consensus 286 ~gY~~fG~~ 294 (473)
T PLN03074 286 AVYWAFGDE 294 (473)
T ss_pred eeeeeechh
Confidence 777777765
No 57
>PTZ00206 amino acid transporter; Provisional
Probab=99.47 E-value=1.2e-10 Score=117.87 Aligned_cols=237 Identities=14% Similarity=0.089 Sum_probs=153.7
Q ss_pred hhHHHhhhhhhcc-cccCchhhHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCChHHHhHHHHhCChhHHHHH
Q 044788 46 LPLIFLIYFEVAG-GPYGEEPAVGAAGPLFAILGFLIFPFIWSIPEALVTAELATTFPGNGGYVIWAHHAFGPFWGSLMG 124 (483)
Q Consensus 46 ~~~~~~~i~~~iG-g~~~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~l~~~el~~~~p~~Gg~y~~~~~~~g~~~g~~~g 124 (483)
.+..+-.+.+++| |++++|.+..++|....++..++.+.+ .......+.+.+.+.+ .-++.+.+++++||...+++.
T Consensus 63 ~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~l-s~ys~~lL~~~~~~~~-~~sY~~la~~~~G~~g~~~v~ 140 (467)
T PTZ00206 63 AASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAM-TIFSIYALGVAADKTN-IRTYEGVARVLLGPWGSYYVA 140 (467)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHHHHHHHHHHhccCC-CCCHHHHHHHHhCHHHHHHHH
Confidence 5556666667789 899999999999987666666666665 6666666677666643 447788889999999999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHhcccccc-chH------HHHH-HHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHH
Q 044788 125 SWKFLSGVINLASYPILCIDYLKLVFPIFAS-GFS------HYLA-IFVVTLVLSFLNYTGLAIVGYTAVTLGVVSLIPF 196 (483)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~------~~~~-~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~~ 196 (483)
...++.....+..+....++.+...++..+. ++. +..+ .+.+...+-+...+.++..+++..+.....+...
T Consensus 141 ~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~~~~~~r~~~~~i~~~i~lPLs~~r~i~~L~~~S~i~~~~i~~~v 220 (467)
T PTZ00206 141 ATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLKQKSGNRLLTSLMWLCFMLPLVIPRHIDSLRYVSTIAVSFMVYLV 220 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhccCcEEeeeehhhhHhhhcccccchHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988877653211 010 1111 1111122222234566666666544332222222
Q ss_pred HHHHHHHhccccccccccc-----CCCC-----CCCchHHHHHHHHHHhcchHhhhhhhhhccCcC-cchHHHHHHHHHH
Q 044788 197 LFLTVIAIPKIDSIRWISL-----GQNG-----VPKNWRLFFNTLFWNLNFWDNASTLAGEVEQPQ-RTFPKALFSAGLL 265 (483)
Q Consensus 197 ~~~~i~~~~~~~~~~~~~~-----~~~~-----~~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~p~-r~~p~a~~~~~~~ 265 (483)
+...+....+..+.+..+. +... ........+....|+|.+........+|+|||+ |++.+....++.+
T Consensus 221 i~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M~~~t~~~~~~v~~~s~~i 300 (467)
T PTZ00206 221 IVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDMTNRSVGKFVLASTIAMGM 300 (467)
T ss_pred hhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhhcccchhHHHHHHHHHHHH
Confidence 2222222222211111110 0000 011233445667899999999999999999864 6788999999999
Q ss_pred HHHHHHHHHHHHhhccCCC
Q 044788 266 TCVAYLLPLLAATGAIPLD 284 (483)
Q Consensus 266 ~~~~y~l~~~~~~~~~~~~ 284 (483)
+.++|.+..+..+...+++
T Consensus 301 ~~~lY~~~G~~GYl~fG~~ 319 (467)
T PTZ00206 301 CFTMYVLTAFFGYMDFGRN 319 (467)
T ss_pred HHHHHHHHHHhhhhccccc
Confidence 9999999999999888765
No 58
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=99.41 E-value=2.1e-09 Score=103.24 Aligned_cols=290 Identities=12% Similarity=0.082 Sum_probs=197.8
Q ss_pred cccccccchhHHHhhhhhhcc--cccCchhhHhhhChHHHHHHHHHHHHHHHHHHHHHHHH--hhccCCC-------CCh
Q 044788 38 VTSKKLSLLPLIFLIYFEVAG--GPYGEEPAVGAAGPLFAILGFLIFPFIWSIPEALVTAE--LATTFPG-------NGG 106 (483)
Q Consensus 38 ~~~r~l~~~~~~~~~i~~~iG--g~~~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~l~~~e--l~~~~p~-------~Gg 106 (483)
+.++.++.++.++.+.+.-+| -+-++..++..+||.+..|.|+.+-+. .+-.|+| |+..|.+ .||
T Consensus 58 ~~~~~vS~FqAl~~sla~~VGtGNIaGVAtAI~~GGPGAvFWMWi~Al~G----mat~f~E~~La~~Yr~kd~~G~~~GG 133 (452)
T COG1115 58 AGKGGVSSFQALMTSLAARVGTGNIAGVATAIALGGPGAVFWMWIVALFG----MATKFAESTLAQKYRVKDKDGEYRGG 133 (452)
T ss_pred CCCCCcChHHHHHHHHHhccCcchHHHHHHHHHcCCCccHHHHHHHHHHH----HHHHHHHHHHHhheeEeCCCCCCcCC
Confidence 567789999999999998888 346778888889999999988887543 4555566 6666663 488
Q ss_pred HHHhHHHHhC-ChhHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhchhHHHHH
Q 044788 107 YVIWAHHAFG-PFWGSLMGSWKFLSGV-INLASYPILCIDYLKLVFPIFASGFSHYLAIFVVTLVLSFLNYTGLAIVGYT 184 (483)
Q Consensus 107 ~y~~~~~~~g-~~~g~~~g~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~ 184 (483)
.-.|.++.+| |.+|.+.+....+.+- ......+...++.+...++ ++.+..++++.++..++.+.|+|..+++
T Consensus 134 P~yYi~kGl~~r~l~v~FA~~li~afg~i~n~vQ~NsIa~a~~~af~-----~~~~~~gi~la~l~~~VI~GGi~rIa~v 208 (452)
T COG1115 134 PAYYIEKGLGMRWLAVLFAFALIAAFGFIGNGVQSNSIASALANAFG-----IPPLVTGIVLALLVALVIFGGIKRIAKV 208 (452)
T ss_pred hHHHHHhhcCCcHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHhcC-----CcHHHHHHHHHHHHHHHHHcchHHHHHH
Confidence 9999999999 4568887766666665 4678888888888888776 4678888888888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhc-ccc--cccc-----cccCCCCCCCchHHH-----HHH----HHHH---hcchHhhhhh
Q 044788 185 AVTLGVVSLIPFLFLTVIAIP-KID--SIRW-----ISLGQNGVPKNWRLF-----FNT----LFWN---LNFWDNASTL 244 (483)
Q Consensus 185 ~~~~~~~~i~~~~~~~i~~~~-~~~--~~~~-----~~~~~~~~~~~~~~~-----~~~----~~~a---~~G~e~~~~~ 244 (483)
...+...+.+..++..+..+. +.+ |+-+ ..+++.....+..+. +.. ..|+ =.|....++.
T Consensus 209 ~~~vVPfMA~~Yi~~~~~Ii~~n~~~iP~~i~~If~sAF~~~aa~GG~~G~~v~~aI~~Gv~RGlfSNEAGmGsap~aaA 288 (452)
T COG1115 209 SSKVVPFMAILYVLVALVIIVLNISQIPAVIALIFSSAFGPKAAAGGFAGYTVAQAIRNGVKRGLFSNEAGMGSAPIAAA 288 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhhHHHHHHHHHhcCCchhhhhhhhhHHHHHHHHHHHHHHhhcccccCCcchhHHH
Confidence 988888877766655544332 111 1000 011111101122211 111 1222 2377777888
Q ss_pred hhhccCcCcchHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCC--ccccHHHHHHHHHcchHHHHHHHHHHHHHHHHHHH
Q 044788 245 AGEVEQPQRTFPKALFSAGLLTCVAYLLPLLAATGAIPLDQQN--WVDGYFAEVAEIIAGKWLKICIEIGACLSIIGLYE 322 (483)
Q Consensus 245 ~~E~k~p~r~~p~a~~~~~~~~~~~y~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (483)
+.++++|.|+=-..++.-.+-..+.-..+.+.++..-.++... +........++...+++...++.+.+++..+++..
T Consensus 289 aA~~~hPv~QGlv~~~gvfiDT~iVCt~Ta~iIL~sg~~~~~~~~~G~~ltq~A~~~~~g~~G~~fv~i~l~lFafTTIl 368 (452)
T COG1115 289 AAKTDHPVKQGLVQMLGVFIDTLVVCTATAFIILLSGAWNSGGGLSGAALTQAAFSSHLGSWGSYFVAIALFLFAFTTIL 368 (452)
T ss_pred hhcCCCcHHHhHHHHhhhhhhhhHHhhHHHHHHHHcCCcccCCCCchHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHH
Confidence 8889999776555554444435555555555555443333222 23334555667777899999999999999999999
Q ss_pred HHhhhhhHHHHHhh
Q 044788 323 AQLSNCAYQILGMT 336 (483)
Q Consensus 323 ~~~~~~sR~l~~~a 336 (483)
++.+..-|-+.-+.
T Consensus 369 g~yyyge~~~~fl~ 382 (452)
T COG1115 369 GWYYYGEKNIEFLF 382 (452)
T ss_pred HHHHHHHHHHHHHh
Confidence 99998777766554
No 59
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=99.34 E-value=3.5e-09 Score=103.64 Aligned_cols=285 Identities=11% Similarity=0.106 Sum_probs=177.0
Q ss_pred ccccchhHHHhhhhhhcc-c-ccCchhhHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCC---CC----ChHHHhH
Q 044788 41 KKLSLLPLIFLIYFEVAG-G-PYGEEPAVGAAGPLFAILGFLIFPFIWSIPEALVTAELATTFP---GN----GGYVIWA 111 (483)
Q Consensus 41 r~l~~~~~~~~~i~~~iG-g-~~~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~l~~~el~~~~p---~~----Gg~y~~~ 111 (483)
++++.++.++...+..+| | +.+++.++..+||.+..|.|+.+-+. ....+.-.-++.++. +. ||.-.|.
T Consensus 45 g~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GGpGAvFWMWI~allG--m~~~~~e~~L~~~yr~~~~~g~~~GGP~yyi 122 (425)
T TIGR00835 45 GGVSSFQALFTSLAARVGIGNIVGVATAIAIGGPGAVFWMWVTAFIG--MATKFVESTLAQKYRERDADGVFRGGPMYYI 122 (425)
T ss_pred CCccHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCchHHHHHHHHHH--HHHHHHHHHHHHHeeeeCCCCCEecChHHHH
Confidence 569999999999999999 5 78888888889998888877766443 222332222444443 22 4555777
Q ss_pred HHHhC-ChhHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHH
Q 044788 112 HHAFG-PFWGSLMGSWKFLSG-VINLASYPILCIDYLKLVFPIFASGFSHYLAIFVVTLVLSFLNYTGLAIVGYTAVTLG 189 (483)
Q Consensus 112 ~~~~g-~~~g~~~g~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~ 189 (483)
++.++ |.+|.+.+.. .+.+ ...........++.++..++ .+.+..++++.++...+..-|+|..+++...+.
T Consensus 123 ~~gl~~k~lg~lfa~~-~i~~f~~~~~~Q~nsi~~~~~~~~~-----~~~~v~~i~l~~l~~~vi~GGik~Ia~v~~~lv 196 (425)
T TIGR00835 123 KKGLGMRWLAVLFAVF-LIASFGIGNMVQANAIASALSNAFN-----VPKLVTGIVLTVLTALIIFGGLKRIAKISSVVV 196 (425)
T ss_pred HHHhCccHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHcC-----CcHHHHHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 88776 6678777766 4444 34456667777777764442 456777777777777777779999999999888
Q ss_pred HHHHHHHHHHHHHHhcccccccccc---------cCCCCCCCchHHHH--HH-------HHHH---hcchHhhhhhhhhc
Q 044788 190 VVSLIPFLFLTVIAIPKIDSIRWIS---------LGQNGVPKNWRLFF--NT-------LFWN---LNFWDNASTLAGEV 248 (483)
Q Consensus 190 ~~~i~~~~~~~i~~~~~~~~~~~~~---------~~~~~~~~~~~~~~--~~-------~~~a---~~G~e~~~~~~~E~ 248 (483)
.++.+..++..+.... .|.++.++ ++++....+..+.. .. ..|+ =.|....++.+.|+
T Consensus 197 P~m~~~Y~~~~l~ii~-~n~~~lp~~~~~If~~AF~~~a~~GG~~G~~v~~ai~~Gv~Rg~fSNEAG~Gsa~~a~a~a~~ 275 (425)
T TIGR00835 197 PFMALLYVIMALYIII-MNIEQLPAVISLIFRSAFGGDAAAGGFAGSTVAQAIMIGVKRGLFSNEAGMGSAPIAAAAAQV 275 (425)
T ss_pred HHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHHhhHHHHhccccccCcHHHHHHHhcC
Confidence 8888776554443322 12222211 11111011222211 11 1222 23777888889999
Q ss_pred cCcCcchHHHHHHHHHHHHHHHHHHHHHHhhccCCC---CCCccccHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHh
Q 044788 249 EQPQRTFPKALFSAGLLTCVAYLLPLLAATGAIPLD---QQNWVDGYFAEVAEIIAGKWLKICIEIGACLSIIGLYEAQL 325 (483)
Q Consensus 249 k~p~r~~p~a~~~~~~~~~~~y~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (483)
++|.|+=-.+++--.+-+.+.-.++.+.+...-.++ ..+ ........++...+++...++.++.++..+++..++.
T Consensus 276 ~hP~~QGl~~~~~vfiDTivvCt~Talvil~tg~~~~~~~~~-g~~lt~~af~~~~g~~g~~~v~i~~~lFaftTii~~~ 354 (425)
T TIGR00835 276 SHPVRQGLVQMLGVFIDTMIVCTATALVILLSGVWNNGEGLS-GAQLTQQALSYGLGSFGAVFVAVALFLFAFSTIIGWY 354 (425)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCCCCCCc-HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999876555554444434444444444333322222 111 1222334455556778889999999999999999999
Q ss_pred hhhhHHHHHh
Q 044788 326 SNCAYQILGM 335 (483)
Q Consensus 326 ~~~sR~l~~~ 335 (483)
+...+.+.-+
T Consensus 355 yyge~~~~yl 364 (425)
T TIGR00835 355 YYGEKNAEFL 364 (425)
T ss_pred HHHHHHHHHh
Confidence 8777766655
No 60
>PRK11375 allantoin permease; Provisional
Probab=99.31 E-value=1.9e-08 Score=102.12 Aligned_cols=315 Identities=12% Similarity=0.070 Sum_probs=154.0
Q ss_pred cccccccccchhHHHhhhhhhcc-cccCch-hhHhh-hChHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC-hHHHhH
Q 044788 36 ITVTSKKLSLLPLIFLIYFEVAG-GPYGEE-PAVGA-AGPLFAILGFLIFPFIWSIPEALVTAELATTFPGNG-GYVIWA 111 (483)
Q Consensus 36 ~~~~~r~l~~~~~~~~~i~~~iG-g~~~~~-~~~~~-~G~~~~i~~~~~~~~~~~~~~~l~~~el~~~~p~~G-g~y~~~ 111 (483)
..+.+|+-++++.+.+=++..+. +.+... ..+.. -+....+++.+++.++ .+....-.+..-++.| +.....
T Consensus 20 vp~~~Rt~~~~~~~~~W~g~~~~i~~~~~~g~~l~~GLs~~~ai~ai~lG~~i----~~~~~~l~g~~G~~~Gl~~~v~s 95 (484)
T PRK11375 20 KTQSQRTWKTFNYFTLWMGSVHNVPNYVMVGGFFILGLSTFSIMLAIILSAFF----IAAVMVLNGAAGSKYGVPFAMIL 95 (484)
T ss_pred CCccccCCcHHHHHHHHHHHhccHHHHHHHHHHHHccchHHHHHHHHHHHHHH----HHHHHHHhcccccccCCChhHhH
Confidence 34556778888888877766544 222222 22211 2223455555555444 2222222333333333 356678
Q ss_pred HHHhCChhHHHHHHHHH-HHhhhhHHHHHHHHHHHHH----Hhccccc----------cchHHHHHHHHHHHHHHHHHhh
Q 044788 112 HHAFGPFWGSLMGSWKF-LSGVINLASYPILCIDYLK----LVFPIFA----------SGFSHYLAIFVVTLVLSFLNYT 176 (483)
Q Consensus 112 ~~~~g~~~g~~~g~~~~-~~~~~~~~~~~~~~~~~l~----~~~~~~~----------~~~~~~~~~~~~~~~~~~i~~~ 176 (483)
|..||.+-+.+.+.... +..+...+......++.+. .++|... -+.+..+..+++.++...+.+.
T Consensus 96 R~sFG~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~~~~~~~~~~~~~~g~~~~~~i~~~i~~~l~~~~~~~ 175 (484)
T PRK11375 96 RASYGVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKIWPGFLTLGGDFTLLGLSLPGLITFLIFWLVNVGIGFG 175 (484)
T ss_pred HHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcHHHHHHHHHHHHHHHHHHHc
Confidence 88999887777777763 4545555555555555544 3333211 1122334444445555666778
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCC---CCCchHHH---HHHHHHHhc-chHhhhhhhhhcc
Q 044788 177 GLAIVGYTAVTLGVVSLIPFLFLTVIAIPKIDSIRWISLGQNG---VPKNWRLF---FNTLFWNLN-FWDNASTLAGEVE 249 (483)
Q Consensus 177 g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~---~~~~~~a~~-G~e~~~~~~~E~k 249 (483)
|.|...+++.+...+.++..+...+..+...+.+......+.+ .......+ +...+-.+. +.-..+.+++..|
T Consensus 176 g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~vig~~~~~~~~~~D~tRy~k 255 (484)
T PRK11375 176 GGKVLNKFTAILNPCIYIVFGGMAIWAISLVGIGPIFDYIPSGIQKAENSGFLFLVVINAVVAVWAAPAVSASDFTQNAH 255 (484)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhccCcccccCCcchHHHHHHHHHHHHHHHHHHHccccchhcccC
Confidence 9999999988887777665555554444333322221111111 01111222 222221222 3334566777778
Q ss_pred CcCcchHHHHHHHHHHHHHHHHHHHHHHh-hccCCCCCCccccHHHHHHHHHcchHHHHHHHHHHHHHHHHHHH-HHhhh
Q 044788 250 QPQRTFPKALFSAGLLTCVAYLLPLLAAT-GAIPLDQQNWVDGYFAEVAEIIAGKWLKICIEIGACLSIIGLYE-AQLSN 327 (483)
Q Consensus 250 ~p~r~~p~a~~~~~~~~~~~y~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 327 (483)
++ |+.-++..++..+...+..+..+... .... .......+|...+. .........+..+..+++..++.. ...++
T Consensus 256 ~~-~~~~~~~~~g~~i~~~~~~~~g~~~~~~a~~-~~g~~~~dp~~i~~-~~~~~~~~~~a~l~~v~a~~~tN~~~N~ys 332 (484)
T PRK11375 256 SF-RAQALGQTLGLVVAYILFAVASVCIIAGASI-HYGADTWNVLDIVQ-RWDSLFASFFAVLVILMTTISTNATGNIIP 332 (484)
T ss_pred Ch-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCcCCHHHHHH-HhcchHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 76 55556777666665554433332221 1110 00011234544443 333344444444555666665533 45555
Q ss_pred hhHHHHHhhhcCCCchhhhccCCCCCCCHHHHHHHHHHHHHHH
Q 044788 328 CAYQILGMTNLGLLPKVFGSRSSWFHTPWVGIFISTLIALTVS 370 (483)
Q Consensus 328 ~sR~l~~~a~dg~lP~~~~~~~~~~~~P~~ai~~~~i~~~~~~ 370 (483)
++ +.-...+||+. ++| ++.++..+++.++.
T Consensus 333 ~~-----~~l~~l~pk~i---~~~-----~~~~i~~iig~~~~ 362 (484)
T PRK11375 333 AG-----YQIAALAPTKL---TYK-----NGVLIASIISLLIC 362 (484)
T ss_pred HH-----HHHHHhCcCcc---chh-----hHHHHHHHHHHHhc
Confidence 54 44455677432 332 35555656655544
No 61
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=99.13 E-value=1.7e-12 Score=130.30 Aligned_cols=354 Identities=19% Similarity=0.200 Sum_probs=202.9
Q ss_pred ccccchhHHHhhhhhhcc-cccCchhhHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCC---CCChHHHhHHHHhC
Q 044788 41 KKLSLLPLIFLIYFEVAG-GPYGEEPAVGAAGPLFAILGFLIFPFIWSIPEALVTAELATTFP---GNGGYVIWAHHAFG 116 (483)
Q Consensus 41 r~l~~~~~~~~~i~~~iG-g~~~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~l~~~el~~~~p---~~Gg~y~~~~~~~g 116 (483)
|+-|+++.....+..++| |.+++|.+..++|....++..++.+.+ .......+.|.....| +.-...+.+++.+|
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~~G~~~g~i~l~~~~~~-s~~t~~~l~~~~~~~~~~~~~~~y~~l~~~~~G 79 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQSGWVLGIILLVLVALL-SYYTMYLLVRAANAMPNGTGRRSYGDLARRAFG 79 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHH-HHHhhhhhhcccccccccccccccccccccccc
Confidence 456788999999999999 899999999999987666666666666 7777888888888765 44455567788999
Q ss_pred ChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcccccc--chHHHHHHHHHHHHHHHHHh-hchhHHHHHHHHHHHHHH
Q 044788 117 PFWGSLMGSWKFLSGVINLASYPILCIDYLKLVFPIFAS--GFSHYLAIFVVTLVLSFLNY-TGLAIVGYTAVTLGVVSL 193 (483)
Q Consensus 117 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~-~g~~~~~~~~~~~~~~~i 193 (483)
|+.++++.....+........+....++.+...++...+ ........++...+...+.. +..+..++.........+
T Consensus 80 ~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~~~l~~l~~~s~~~~~~~~ 159 (409)
T PF01490_consen 80 PKGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGDLFISRYVWIIIFALIVLPLSFLKNLKSLRYLSILGLFSIF 159 (409)
T ss_pred ccccccccchheeccccccceeEEEeeeeeecccccccccccccccccccccccccccccccchhhHHHHHhhhhhhccc
Confidence 999999999988888888888888888888877765321 11222222222222222222 233333333322222211
Q ss_pred HHHHHHHHHHhcc--cccccccccCC--CCCCCchHHHHHHHHHHhcchHhhhhhhhhccCcCc--chHHHHHHHHHHHH
Q 044788 194 IPFLFLTVIAIPK--IDSIRWISLGQ--NGVPKNWRLFFNTLFWNLNFWDNASTLAGEVEQPQR--TFPKALFSAGLLTC 267 (483)
Q Consensus 194 ~~~~~~~i~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~p~r--~~p~a~~~~~~~~~ 267 (483)
..+.+........ .++.+...... .....++...+....|+|.+......+.+|+|+|+| ++.|....+..++.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~~~s~~~~~ 239 (409)
T PF01490_consen 160 YFIVIVVIYIISYGPGEPSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKFKKMKKVLSISMIICF 239 (409)
T ss_pred eeeeeecceeeeeecccccccccccccccchhhHHHHhhhhhhhhhhcccccceeeeeccCCccccccceeeeehhhhhh
Confidence 1101111111111 11111111111 001124445566778999999999999999999865 35599999999999
Q ss_pred HHHHHHHHHHhhccCCCCCCccccHHHHHHHHHcch-HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcC-----CC
Q 044788 268 VAYLLPLLAATGAIPLDQQNWVDGYFAEVAEIIAGK-WLKICIEIGACLSIIGLYEAQLSNCAYQILGMTNLG-----LL 341 (483)
Q Consensus 268 ~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg-----~l 341 (483)
++|++.....+...+++..+ .+...+.+. +...+..++..+..+.+.........+.+...-++. ..
T Consensus 240 ~~y~~~g~~gy~~fg~~~~~-------~il~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~ 312 (409)
T PF01490_consen 240 IIYLLFGIFGYLAFGDSVQG-------NILLNLPNDDVLIIIARILLVISLLLSYPLQLFPARNSLENLLFKRAASSRDS 312 (409)
T ss_pred HHhhhhhhcccceeeeeecc-------hhhhcCCCcccccccccccchhhhhhccccccchhHhhhhhheeccccccccc
Confidence 99999999888877654211 222222222 344444445555555544444444444444443321 11
Q ss_pred chhhhccCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhC
Q 044788 342 PKVFGSRSSWFHTPWVGIFISTLIALTVSYMDFTNIISCVNFLY--SLGMLLEFASFLWLRKKL 403 (483)
Q Consensus 342 P~~~~~~~~~~~~P~~ai~~~~i~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~r~~~ 403 (483)
++. .+.++..+.-.+..+......+.....+++.+.++.+... .+.|+++.+...+.++++
T Consensus 313 ~~~-~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~~ 375 (409)
T PF01490_consen 313 PKN-TPSSRWLRYLIRIILVLLSFLIAIFVPNFGDIISLVGALFGSFISFILPALLYLKLFKRK 375 (409)
T ss_pred ccc-ccccceeeeeeecchhhhhhhhhhhccchhhhhcccchHHHHhHHHHHHHHHHHHhhccc
Confidence 100 0111101122222222222222233467777777765443 456666665555555544
No 62
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=99.04 E-value=1.6e-06 Score=85.06 Aligned_cols=224 Identities=11% Similarity=0.019 Sum_probs=119.3
Q ss_pred HHHHHHhhccCCCCChHHHhHHHHhCChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHH
Q 044788 91 ALVTAELATTFPGNGGYVIWAHHAFGPFWGSLMGSWKFLSGVINLASYPILCIDYLKLVFPIFASGFSHYLAIFVVTLVL 170 (483)
Q Consensus 91 ~l~~~el~~~~p~~Gg~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 170 (483)
....++++.+...+ ...-.|..||.+-+.+.....++.++...+.....+++..... +. .+.+...++...+.
T Consensus 69 ~A~~s~~Ga~~Glp--qmi~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~~-~~----~~~~~~ili~g~l~ 141 (442)
T COG1457 69 MAYFSYQGARTGLP--QMILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIGSG-TG----LPVWAGILIIGVLM 141 (442)
T ss_pred HHHHHHhccccCCC--hheeecccccchhHHHHHHHHHHHHhhHHHHHHHHhccccccC-CC----CcHHHHHHHHHHHH
Confidence 33445555554433 4445566799999999999888888888888887777763322 22 34455555555667
Q ss_pred HHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCCCCchHHHHHHHHHHhc-chHhhhhhhhhcc
Q 044788 171 SFLNYTGLAIVGYTAVTLGVVSLIPFLFLTVIAIPKIDSIRWISLGQNGVPKNWRLFFNTLFWNLN-FWDNASTLAGEVE 249 (483)
Q Consensus 171 ~~i~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~-G~e~~~~~~~E~k 249 (483)
++..++|.|...+++.+..+..++..+......+-.....+......+..+.++...+..++-.+. +---++.++.-.|
T Consensus 142 ~l~~ifG~r~l~~l~~~a~~~~~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~~fl~a~slv~g~~~sw~~~~aDysRy~~ 221 (442)
T COG1457 142 TLVTIFGYRALHKLERIAVPLLLLLFLYLLALLFRSKGGLDALWVKGPTSPLSFLSALSLVIGSFASWGPYAADYSRYAP 221 (442)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccceeeccCCCcchhHHHHHHHHHHHHHhhhhhhhhhhhhcC
Confidence 777889999999999998888777766655554431211111111112124455555444332222 2222455555566
Q ss_pred CcC-cchHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCccccHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhh
Q 044788 250 QPQ-RTFPKALFSAGLLTCVAYLLPLLAATGAIPLDQQNWVDGYFAEVAEIIAGKWLKICIEIGACLSIIGLYEAQLSNC 328 (483)
Q Consensus 250 ~p~-r~~p~a~~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (483)
+|+ ++.-.+...+......+..+...+.....+.++ +..+.....++ +.....+.+.++..++....++++
T Consensus 222 ~~t~~~~~~~~~~G~~l~~~~~~ilGa~~a~a~g~~~------~~~~~~~~~G~--~g~~~~lil~l~~~ttN~~nlYsa 293 (442)
T COG1457 222 SPTPSKAFLAAVLGFFLGTSFMMILGAALAAAAGNAD------SIADVMLGLGG--FGLPAILILVLGTVTTNANNLYSA 293 (442)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc------hHHHHHHhccc--HHHHHHHHHHHHHHhcCcHHHHHH
Confidence 653 123333333443443333333333333333221 33444433333 444555555555555544445554
Q ss_pred h
Q 044788 329 A 329 (483)
Q Consensus 329 s 329 (483)
+
T Consensus 294 ~ 294 (442)
T COG1457 294 G 294 (442)
T ss_pred H
Confidence 4
No 63
>PRK11017 codB cytosine permease; Provisional
Probab=98.99 E-value=2e-05 Score=78.56 Aligned_cols=186 Identities=10% Similarity=-0.062 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCChHHHhHHHHhCChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhccc
Q 044788 73 LFAILGFLIFPFIWSIPEALVTAELATTFPGNGGYVIWAHHAFGPFWGSLMGSWKFLSGVINLASYPILCIDYLKLVFPI 152 (483)
Q Consensus 73 ~~~i~~~~~~~~~~~~~~~l~~~el~~~~p~~Gg~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 152 (483)
...+++.+++.++ ........+..+.++-. +.....|..||.+.+.+.+....+..+...+......+..+...++.
T Consensus 42 ~~ai~aiilG~~i-~~~~~~l~~~~G~k~G~--~~~v~sR~~FG~~Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~~~ 118 (404)
T PRK11017 42 VDFLLAVLIGNLL-LGIYTAALGYIGAKTGL--STHLLARFSFGEKGSWLPSLLLGFTQVGWFGVGVAMFAIPVVKATGL 118 (404)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHhccCc--CHHHHHHHHhchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCC
Confidence 3455555555443 22222223344444322 35567788899998888888777777766667766666666655442
Q ss_pred cccchHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHhcccc-cccccccCCCCCCCchHHHHHHH
Q 044788 153 FASGFSHYLAIFVVTLVLSFLNYTGLAIVGYTAVTLGVVSLIPFLFLTVIAIPKID-SIRWISLGQNGVPKNWRLFFNTL 231 (483)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 231 (483)
+ .....+++.++.......|.|...+++.+......+..+...+..+.+.+ .+......+. .+..+...+...
T Consensus 119 -~----~~~~~~i~~~l~~~~~~~G~~~i~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~a~~~~ 192 (404)
T PRK11017 119 -D----INLLIVLSGLLMTVTAYFGISALTILSRIAVPAIALLGGYSVWLAVNDVGGLDGLKAIVPA-EPLDFSAALTLV 192 (404)
T ss_pred -C----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhcCCCC-CcccHHHHHHHH
Confidence 1 11233334455556667888888888888777666655544443333222 1122111111 123444333332
Q ss_pred H-HHhcchHhhhhhhhhccCcCcchHHHHHHHHHHHHH
Q 044788 232 F-WNLNFWDNASTLAGEVEQPQRTFPKALFSAGLLTCV 268 (483)
Q Consensus 232 ~-~a~~G~e~~~~~~~E~k~p~r~~p~a~~~~~~~~~~ 268 (483)
+ +-..+.-..+.+++..|+|+ +.-.+...+..+...
T Consensus 193 ~g~~~~~~~~~~DysRy~k~~~-~~~~~~~lg~~i~~~ 229 (404)
T PRK11017 193 VGSFISGGTLTADFVRFGRSAK-IAVLATMVAFFLGNS 229 (404)
T ss_pred HHHHHHhHhcCCChHhhccCcc-ceeehhHHHHHHHHH
Confidence 1 22334445667777778764 333555555544433
No 64
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=98.97 E-value=2.2e-05 Score=80.44 Aligned_cols=289 Identities=11% Similarity=0.017 Sum_probs=154.7
Q ss_pred cccccccchhHHHhhhhhhcc--cccCchhhHhhhChHHHHHHHH--HHHHHHHHHHHHHHHHhhccCCCCChHHHhHHH
Q 044788 38 VTSKKLSLLPLIFLIYFEVAG--GPYGEEPAVGAAGPLFAILGFL--IFPFIWSIPEALVTAELATTFPGNGGYVIWAHH 113 (483)
Q Consensus 38 ~~~r~l~~~~~~~~~i~~~iG--g~~~~~~~~~~~G~~~~i~~~~--~~~~~~~~~~~l~~~el~~~~p~~Gg~y~~~~~ 113 (483)
.-.|+++++......+++.++ ...+.++..+..|.....++.. ....+.....+.-+.++.++.. .=..++|.++
T Consensus 38 ~agr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~-~~T~~e~l~~ 116 (483)
T PRK09442 38 LGNRSMGGFVLAMTLIATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILARKYN-AVTLNDMLRA 116 (483)
T ss_pred eeCCCccHHHHHHHHHHHHhhHhHHhCChhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CccHHHHHHH
Confidence 346888988887777777766 3467777777766532222111 1111101123344556666653 4478899999
Q ss_pred HhCCh-hHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHH
Q 044788 114 AFGPF-WGSLMGSWKFLSGVINLASYPILCIDYLKLVFPIFASGFSHYLAIFVVTLVLSFLNYTGLAIVGYTAVTLGVVS 192 (483)
Q Consensus 114 ~~g~~-~g~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~ 192 (483)
-+|++ ...+.+....+..+...+....+.+..++..++- +. +...+ +..........+-|+|...+...+-.++.
T Consensus 117 Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~gi-~~-~~~ii--i~~~iv~iYt~~GGl~av~~TD~iQ~~i~ 192 (483)
T PRK09442 117 RYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATGI-SY-ETGLL--IFGITVALYTAFGGFRAVVLTDALQGIVM 192 (483)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CH-HHHHH--HHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 99865 5666666666666666677777777888777652 11 11111 12222344455567887777665555554
Q ss_pred HHHHHHHHHHHhccc-------------ccccccccCCCCCCCchHHHHHH---HHHHhcchHhhhhhhhhccCcCcchH
Q 044788 193 LIPFLFLTVIAIPKI-------------DSIRWISLGQNGVPKNWRLFFNT---LFWNLNFWDNASTLAGEVEQPQRTFP 256 (483)
Q Consensus 193 i~~~~~~~i~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~---~~~a~~G~e~~~~~~~E~k~p~r~~p 256 (483)
++..++..+..+... +++.+.+.+..+ ..++...... ..+...+.....+-.=..||+ |+..
T Consensus 193 ~~~~~vi~~~~~~~~gG~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~p~~~qR~~aaks~-~~a~ 270 (483)
T PRK09442 193 LVGTVILLIGVIHAGGGLENAVQTLQAIDPQLVTPQGADD-ILSPPFMTSFWILVCFGVIGLPHTAVRCMSYKDS-KALH 270 (483)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHhcCccccCCCCCCc-cccHHHHHHHHHHHHHHHhCCCHHHHHHHHcCCH-HHHH
Confidence 444333332222111 111111111110 1122111111 111122222222222235776 7788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh---hccCCCCCCccccHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 044788 257 KALFSAGLLTCVAYLLPLLAAT---GAIPLDQQNWVDGYFAEVAEIIAGKWLKICIEIGACLSIIGLYEAQLSNCAYQIL 333 (483)
Q Consensus 257 ~a~~~~~~~~~~~y~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~ 333 (483)
|+.+++.+....+++....... ...|+ ....+..+..+..+..++++..++..+++.+..++..+.+.+.+-.
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~p~--~~~~~~~~p~l~~~~lp~~l~gl~~a~~~aA~mST~~s~l~~~ss~-- 346 (483)
T PRK09442 271 RGIIIGTIVVGFLMFGMHLAGALGRAVLPD--LTVPDKVIPTLMLKVLPPFAAGIFLAAPMAAIMSTVDSQLLQSSST-- 346 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CCCccchHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 9988887766666554443321 12332 2234556667777788899888888888888888877777655532
Q ss_pred Hhhhc
Q 044788 334 GMTNL 338 (483)
Q Consensus 334 ~~a~d 338 (483)
.+||
T Consensus 347 -~~~D 350 (483)
T PRK09442 347 -IIKD 350 (483)
T ss_pred -HHHH
Confidence 4455
No 65
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=98.95 E-value=9.3e-06 Score=79.83 Aligned_cols=317 Identities=16% Similarity=0.139 Sum_probs=181.6
Q ss_pred hhhhcc-cccCchhhHhh-hCh--HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCChHHHhHHHHhCChhHHHHHHHHH
Q 044788 53 YFEVAG-GPYGEEPAVGA-AGP--LFAILGFLIFPFIWSIPEALVTAELATTFPGNGGYVIWAHHAFGPFWGSLMGSWKF 128 (483)
Q Consensus 53 i~~~iG-g~~~~~~~~~~-~G~--~~~i~~~~~~~~~~~~~~~l~~~el~~~~p~~Gg~y~~~~~~~g~~~g~~~g~~~~ 128 (483)
++.-.| |=.-.|..+.+ +|. ....+++++.++..-+...++.+ . ..|+.++. .+-.||..|.+.....+
T Consensus 13 FamFFGAGNLIFPp~lG~~aG~~~~~a~~GF~lTgV~lP~Lgvia~~-----~-~~~~~~~l-~~~v~~~f~~if~~~i~ 85 (427)
T PF05525_consen 13 FAMFFGAGNLIFPPFLGQQAGSNWWPAMIGFLLTGVGLPLLGVIAVA-----K-SGGGIEDL-ASRVGPKFALIFTILIY 85 (427)
T ss_pred HHHHhCCccccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHh-----h-cCCCHHHH-hcccCcHHHHHHHHHHH
Confidence 333346 33455666655 554 34677777777652333322222 1 23345554 44457888877665544
Q ss_pred HH--hhhhHHHHHHHHHH-HHHHhccccccchHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044788 129 LS--GVINLASYPILCID-YLKLVFPIFASGFSHYLAIFVVTLVLSFLNYTGLAIVGYTAVTLGVVSLIPFLFLTVIAIP 205 (483)
Q Consensus 129 ~~--~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~ 205 (483)
+. -....+=.+...-+ .+..++|. ++.+...+.++++..+..++.+..-|...++-.+++.+.++.++++++.++.
T Consensus 86 l~IGP~~aiPRtaa~sfe~~i~p~~~~-~~~~~~~ifs~iFF~i~~~l~~~p~kivd~iGk~LTP~LL~~l~ilii~~i~ 164 (427)
T PF05525_consen 86 LSIGPLFAIPRTAAVSFEMGIAPFFPE-NSNISLLIFSIIFFAITYLLSLNPSKIVDRIGKFLTPILLILLAILIIKGIF 164 (427)
T ss_pred HHHHhcccCcchhhhhHHHhhhccCCc-ccccchhhhhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 22222222222222 23333443 3456677778888888888999999999999999999998888888887776
Q ss_pred ccccccccccCCCCCCCchH-HHH---HH----HHHHhcchHhhhhhhhhccCcCcchHHHHHH----HHHHHHHHHHHH
Q 044788 206 KIDSIRWISLGQNGVPKNWR-LFF---NT----LFWNLNFWDNASTLAGEVEQPQRTFPKALFS----AGLLTCVAYLLP 273 (483)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~-~~~---~~----~~~a~~G~e~~~~~~~E~k~p~r~~p~a~~~----~~~~~~~~y~l~ 273 (483)
+...+...+.+ +..+..+. ++. +. ....|...-..+--....||+ |+..|.+.. +.+...+.|...
T Consensus 165 ~p~g~~~~~~~-~y~~~~f~~Gf~eGY~TMD~laal~Fg~iIi~~i~~~g~~~~-k~~~~~~~~ag~ia~~lL~~IY~gL 242 (427)
T PF05525_consen 165 SPIGPPQAPSG-AYASNPFFKGFLEGYQTMDALAALAFGIIIINAIRQKGYKDK-KEIKKYTIKAGLIAGILLALIYGGL 242 (427)
T ss_pred cCCCCccccch-hhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 53322221110 00011111 111 10 112222222222222223333 444444444 444445555555
Q ss_pred HHHHhhccCC-CCCCccccHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCCCchhhhccCCCC
Q 044788 274 LLAATGAIPL-DQQNWVDGYFAEVAEIIAGKWLKICIEIGACLSIIGLYEAQLSNCAYQILGMTNLGLLPKVFGSRSSWF 352 (483)
Q Consensus 274 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~~~~~~~~~ 352 (483)
........+. ++..+....+..+.++..|+.+..++.+.+.++|+++..+...+.+.. |++..| +
T Consensus 243 ~~lGa~~~~~~~~~~~g~~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~y-------------f~~~~~-k 308 (427)
T PF05525_consen 243 AYLGATSSGSFPDDINGAELLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEY-------------FSELFP-K 308 (427)
T ss_pred HHHccCCcccccCCCCHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHhc-c
Confidence 5444443332 223334567888899999999999999999999999999999888854 455555 2
Q ss_pred CCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Q 044788 353 HTPWVGIFISTLIALTVSYMDFTNIISCVNFLYSLGMLLEF 393 (483)
Q Consensus 353 ~~P~~ai~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 393 (483)
-.....+++.++++.++...+++.+++...-...+.|-+.+
T Consensus 309 isY~~~v~i~~i~S~~ian~Gl~~Ii~~s~PiL~~iYP~~I 349 (427)
T PF05525_consen 309 ISYKVWVIIFTIFSFIIANLGLDQIIKISVPILMFIYPVAI 349 (427)
T ss_pred cChHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHhHHHH
Confidence 22233445566778888888899999988877777776655
No 66
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=98.90 E-value=4.3e-05 Score=78.07 Aligned_cols=289 Identities=11% Similarity=0.010 Sum_probs=155.3
Q ss_pred cccccccchhHHHhhhhhhcc--cccCchhhHhhhChHHHHHHH---HHHHHHHHHHHHHHHHHhhccCCCCChHHHhHH
Q 044788 38 VTSKKLSLLPLIFLIYFEVAG--GPYGEEPAVGAAGPLFAILGF---LIFPFIWSIPEALVTAELATTFPGNGGYVIWAH 112 (483)
Q Consensus 38 ~~~r~l~~~~~~~~~i~~~iG--g~~~~~~~~~~~G~~~~i~~~---~~~~~~~~~~~~l~~~el~~~~p~~Gg~y~~~~ 112 (483)
.-.|+++++......+++.+| ...+.++..+..|.....+.+ ..+.++ ....+.-+.++.++. +.-..++|.+
T Consensus 37 ~agr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~T~~e~l~ 114 (471)
T TIGR02119 37 LGGRSMGGFVLAMTLVATYGSASSFIGGPGIAYNYGLGWVLLAMIQVPTGYFV-LGVLGKKFAIISRKY-NAITINDVLK 114 (471)
T ss_pred EeCCcccHHHHHHHHHHHHhhHHHHcCcHHHHHHhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHc-CCccHHHHHH
Confidence 456889999888888888877 346777777776653221111 111111 111233344555555 3448899999
Q ss_pred HHhCCh-hHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhccccccchHHHHHH-HHHHHHHHHHHhhchhHHHHHHHHHHH
Q 044788 113 HAFGPF-WGSLMGSWKFLSGVINLASYPILCIDYLKLVFPIFASGFSHYLAI-FVVTLVLSFLNYTGLAIVGYTAVTLGV 190 (483)
Q Consensus 113 ~~~g~~-~g~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~g~~~~~~~~~~~~~ 190 (483)
+-+|++ ...+.+....+..+........+.+..++..++- +.+... +...........-|+|...+.+.+-.+
T Consensus 115 ~Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~gi-----~~~~~iii~~~iv~iYt~~GG~~av~~td~iQ~~ 189 (471)
T TIGR02119 115 ARYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTGL-----SYLTALFIFSSSVLIYTTFGGFRAVALTDAIQGI 189 (471)
T ss_pred HHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 999954 4666666655555555556666677777776652 222111 122234445555788887777666555
Q ss_pred HHHHHHHHHHHHHhccc-cccc----cccc-----CCCCCCCc-hHHHHHHHH-----HHhcchHhhhhhhhhccCcCcc
Q 044788 191 VSLIPFLFLTVIAIPKI-DSIR----WISL-----GQNGVPKN-WRLFFNTLF-----WNLNFWDNASTLAGEVEQPQRT 254 (483)
Q Consensus 191 ~~i~~~~~~~i~~~~~~-~~~~----~~~~-----~~~~~~~~-~~~~~~~~~-----~a~~G~e~~~~~~~E~k~p~r~ 254 (483)
+.++..++.....+.+. +.++ ..+. .+.+ ..+ +...+...+ +...+.....+-.-..||+ |+
T Consensus 190 v~~~~~~~~~~~~l~~~gG~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~p~~~~R~~aak~~-~~ 267 (471)
T TIGR02119 190 VMFTGTTILLIAVIKAGGGVEKIMEKLKDIDPNLITPFG-GDGGLTKPFVASFWILVGIGVIGLPQTAVRCMSYKDS-KA 267 (471)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCccccCCCC-CCcchhhhHHHHHHHHHHHHHhCchHHHHHHHhcCCH-HH
Confidence 55544444333333221 1100 0110 0010 111 111111111 1222322223334445765 78
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcc-CCCCCCccccHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 044788 255 FPKALFSAGLLTCVAYLLPLLAATGAI-PLDQQNWVDGYFAEVAEIIAGKWLKICIEIGACLSIIGLYEAQLSNCAYQIL 333 (483)
Q Consensus 255 ~p~a~~~~~~~~~~~y~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~ 333 (483)
..|+..++.+....+++...+...... -.++..+.+..+..+..+..+++...++..+++.+..++..+.+.+.+-.
T Consensus 268 a~~~~~~~~~~~~~~~~~~~~~G~~a~~~~p~~~~~d~~~p~~~~~~lp~~~~gl~~a~llaA~mST~~s~l~~~ss~-- 345 (471)
T TIGR02119 268 MHRAMIIGTIVVGIIMLGMHLAGVLGRAVIPDLTVPDKVIPLLAIKVLPPILAGIFLAAPMAAIMSTVNSLLLQSSST-- 345 (471)
T ss_pred HhhhHhHHHHHHHHHHHHHHHHHHhhhhhccCCCCccchHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 899998887766666554443322211 01223334556667767778888888888888888888888777766543
Q ss_pred Hhhhc
Q 044788 334 GMTNL 338 (483)
Q Consensus 334 ~~a~d 338 (483)
.+||
T Consensus 346 -~~~D 349 (471)
T TIGR02119 346 -IIKD 349 (471)
T ss_pred -HHHH
Confidence 4455
No 67
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=98.87 E-value=6.3e-05 Score=77.08 Aligned_cols=290 Identities=10% Similarity=0.044 Sum_probs=140.6
Q ss_pred ccccccchhHHHhhhhhhcc--cccCchhhHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccC----CCCChHHHhHH
Q 044788 39 TSKKLSLLPLIFLIYFEVAG--GPYGEEPAVGAAGPLFAILGFLIFPFIWSIPEALVTAELATTF----PGNGGYVIWAH 112 (483)
Q Consensus 39 ~~r~l~~~~~~~~~i~~~iG--g~~~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~l~~~el~~~~----p~~Gg~y~~~~ 112 (483)
-.|+++++.......++.++ ...+.++..+..|... .+..+...+. .+...+.+++--+++ ++.-..++|.+
T Consensus 34 agr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~~G~~~-~~~~~g~~~~-~~~~~~~~~~~~r~~~~~~~~~~T~~e~l~ 111 (487)
T TIGR02121 34 GGRSLGPFVTALSAGASDMSGWLLMGLPGALYVTGLSE-LWIAIGLTIG-AYINWKFVAPRLRVYTEAAHNSITLPDFFE 111 (487)
T ss_pred eCCcccHHHHHHHHHHHHHhHHHHHhhHHHHHHhhHHH-HHHHHHHHHH-HHHHHHHHHHHHHHHhHhhcCCccHHHHHH
Confidence 46888888877666665555 3356777777766533 2211111111 122223333322222 22346899999
Q ss_pred HHhCC---hhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHH
Q 044788 113 HAFGP---FWGSLMGSWKFLSGVINLASYPILCIDYLKLVFPIFASGFSHYLAIFVVTLVLSFLNYTGLAIVGYTAVTLG 189 (483)
Q Consensus 113 ~~~g~---~~g~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~ 189 (483)
+-+|+ ....+.+....+......+....+.+..++.+++. + . ...+.+...+......+-|+|...+...+=.
T Consensus 112 ~Ryg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~gi-~--~-~~~iii~~~i~~~Yt~~GGl~av~~TD~iQ~ 187 (487)
T TIGR02121 112 NRFNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTFGL-D--Y-KTGLLIGALIIVIYTFFGGFLAVSWTDFVQG 187 (487)
T ss_pred HHhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-c--H-HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 99985 34444554444444445566666667777766542 1 1 1112222233444555567777776654444
Q ss_pred HHHHHHHHHHHHHHhccc-cccc----ccccCC---C-CCCCchHHHHHHHHHH--hcchHhhhhhhhhccCcCcchHHH
Q 044788 190 VVSLIPFLFLTVIAIPKI-DSIR----WISLGQ---N-GVPKNWRLFFNTLFWN--LNFWDNASTLAGEVEQPQRTFPKA 258 (483)
Q Consensus 190 ~~~i~~~~~~~i~~~~~~-~~~~----~~~~~~---~-~~~~~~~~~~~~~~~a--~~G~e~~~~~~~E~k~p~r~~p~a 258 (483)
++.++..++..+..+.+. ..+. ....++ + ..+..+..+.....|. +.|.....+=.=-.||+ |+..|+
T Consensus 188 ~i~~~~~~~v~~~~~~~~GG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~qR~~aaks~-k~~~~~ 266 (487)
T TIGR02121 188 LLMFFALVLVPIVALFNLGGFGETLSAVAAINPHLLDMFKGASVIAIISLLAWGLGYFGQPHIIVRFMAIRSH-KELPKA 266 (487)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhCccccCCCCCCCHHHHHHHHHHHHHhccchHHHHHHHhcCCH-HHHHHH
Confidence 444433332222222211 1110 000000 0 0112233333222222 12221111111223554 778888
Q ss_pred HHHHHHHHHHHHHHHH---HHHhh---ccCCCCCCccccHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 044788 259 LFSAGLLTCVAYLLPL---LAATG---AIPLDQQNWVDGYFAEVAEIIAGKWLKICIEIGACLSIIGLYEAQLSNCAYQI 332 (483)
Q Consensus 259 ~~~~~~~~~~~y~l~~---~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l 332 (483)
..++.......++... +.... ..|.....+.+..+..+.++..++++..++..+++.+..++..+.+.+.+-.
T Consensus 267 ~~~~~~~~~~~~~~~~~~g~~g~~~~~~~p~~~~~~~d~~~~~~~~~~~p~~l~gl~~a~ilaA~mST~~s~l~s~ss~- 345 (487)
T TIGR02121 267 RRIGMSWMILSLLGAIAVGLTGIAYFNKNPHVELVDRETIFIVLSQILFHPWIAGILLAAILAAIMSTISSQLLVSSSA- 345 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCccccCCCcchhHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 8777543332222111 11111 1121112234556667777778888888888888888888888888877644
Q ss_pred HHhhhc
Q 044788 333 LGMTNL 338 (483)
Q Consensus 333 ~~~a~d 338 (483)
.+||
T Consensus 346 --~~~D 349 (487)
T TIGR02121 346 --LTED 349 (487)
T ss_pred --HHHH
Confidence 4555
No 68
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=98.84 E-value=8.3e-07 Score=87.34 Aligned_cols=351 Identities=16% Similarity=0.125 Sum_probs=175.3
Q ss_pred ccccchhHHHhhhhhhcc-cccCchhhHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCChHHHhHHHHhCChh
Q 044788 41 KKLSLLPLIFLIYFEVAG-GPYGEEPAVGAAGPLFAILGFLIFPFIWSIPEALVTAELATTFPGNGGYVIWAHHAFGPFW 119 (483)
Q Consensus 41 r~l~~~~~~~~~i~~~iG-g~~~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~l~~~el~~~~p~~Gg~y~~~~~~~g~~~ 119 (483)
++-+....+.-...+++| |++..|.+....|-...++.....+++ .....+.+.+.+.+.++. .+-...++.+|+..
T Consensus 4 ~~~s~~~~v~nl~~ti~GaGIl~~P~afk~~Giv~gi~li~~~a~~-s~~sl~~l~~~a~~~~~~-ty~~l~~~~~g~~g 81 (411)
T KOG1305|consen 4 GKTSFRSAVFNLVNTIMGAGILAMPYAFKTAGLLLGILLIVLSAFL-SLLSLYLLSKCAKKSGER-TYSSLGDLIFGKLG 81 (411)
T ss_pred CccchhhhHHHHHhhhhccHHHHhHHHHHHhcHHHHHHHHHHHHHH-HHhHHHHHHHhhhhcCCC-CHHHHHHHHcCCCc
Confidence 445677778888888889 899999999998876666656666666 777788888888888877 56667777777654
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHhccccc-cch------HHHH-HHHHHHHHHHHHHhhc-hhHHHHHHHHHHH
Q 044788 120 GSLMGSWKFLSGVINLASYPILCIDYLKLVFPIFA-SGF------SHYL-AIFVVTLVLSFLNYTG-LAIVGYTAVTLGV 190 (483)
Q Consensus 120 g~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~------~~~~-~~~~~~~~~~~i~~~g-~~~~~~~~~~~~~ 190 (483)
.+......-..... +..+....++.+..+..... .++ .+.. +.+.....+..+.+.. +... +......+
T Consensus 82 ~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~~~~~~~~~~~~~~ill~~~~~i~pLsl~k~l~~L-k~tS~~s~ 159 (411)
T KOG1305|consen 82 KVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLDEEGGSHYLDRNFLILLVLLFIILPLSLLKNLDSL-KYTSALSL 159 (411)
T ss_pred eeeehhhHHhhhcc-ceEEEEEEccccchhhhhcccccccccccccceeEeehHHHHHHHHHHHHHhhhhH-HHHHHHHH
Confidence 22222221111111 11111111111111111000 000 0000 1111111122222221 1111 22333333
Q ss_pred HHHHHHHHHHHHHhccccc--ccccccCCCCC-CCchHHHHHHHHHHhcchHhhhhhhhhccCcC-cchHHHHHHHHHHH
Q 044788 191 VSLIPFLFLTVIAIPKIDS--IRWISLGQNGV-PKNWRLFFNTLFWNLNFWDNASTLAGEVEQPQ-RTFPKALFSAGLLT 266 (483)
Q Consensus 191 ~~i~~~~~~~i~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~p~-r~~p~a~~~~~~~~ 266 (483)
...+.++...+........ .......++.. ..++...++..+++|...+.....-.|+|||+ |++.+....+...+
T Consensus 160 ~~~~~fv~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~~~i~~v~~~~~~~~ 239 (411)
T KOG1305|consen 160 ASVVYFVVLVVYKYFQGPCALGRLSYLVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDRSVKKIQRVSNIAIILA 239 (411)
T ss_pred HHHHHHHHHHHHHHHhcccccCCcccccCCcchhhhhhhhhhhhheeeeccccceeeeeeeeCchHHHHHHHHHHHHHHH
Confidence 3333333333332222111 11111111110 12455566778899999999999999999996 68889999999999
Q ss_pred HHHHHHHHHHHhhccCCCCCCc----cccHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCCCc
Q 044788 267 CVAYLLPLLAATGAIPLDQQNW----VDGYFAEVAEIIAGKWLKICIEIGACLSIIGLYEAQLSNCAYQILGMTNLGLLP 342 (483)
Q Consensus 267 ~~~y~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP 342 (483)
..+|.......+...+++...+ .+.-.....+. +....+....++...-......+ +-|.- .++-.+|
T Consensus 240 ~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~l~~----~~~~~vr~~~~~~~~l~~pi~~f-Plr~~---l~~~~~~ 311 (411)
T KOG1305|consen 240 TLIYLLTGLFGYLTFGDLVKGNLLHNYDSILNNLLRS----FPLLCVRLRIAVAVLLTFPIVLF-PLRMN---LDELLFP 311 (411)
T ss_pred HHHHHHHHHhhhheecccchHHHHhcCCcccchhHhh----hhHHHHHHHHHHHHHHHHHHHhc-hHHHH---HHHHhcc
Confidence 9999999988888777653221 11101000000 11122222222222222222222 22222 3444445
Q ss_pred hhhh--ccCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 044788 343 KVFG--SRSSWFHTPWVGIFISTLIALTVSYMDFTNIISCVNFLYSLGMLLEFASFLWLRKKL 403 (483)
Q Consensus 343 ~~~~--~~~~~~~~P~~ai~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~ 403 (483)
+... ..+.+++......++....-..+...+...+....+............+.++++.++
T Consensus 312 ~~~~~~~~s~~r~~~itl~ll~~~~l~ai~~p~i~~i~~~vGAT~~~~i~FI~P~~~yl~~~~ 374 (411)
T KOG1305|consen 312 YQPGLTSFSGKRHFVITLLLLIFTFLLAIFVPSIGTIFGFVGATSSTSISFILPALYYLKASK 374 (411)
T ss_pred cCCCCCCccceehhHHHHHHHHHHHHHHHHhccHHHHHHHhhhhhhhhhHHHHHHHhhheeec
Confidence 4332 334445555555555555555555566666666665544444444444555554443
No 69
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=98.75 E-value=3.7e-05 Score=77.02 Aligned_cols=287 Identities=11% Similarity=0.048 Sum_probs=158.3
Q ss_pred cccccchhHHHhhhhhhcc--cccCchhhHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCChHHHhHHHHhCC
Q 044788 40 SKKLSLLPLIFLIYFEVAG--GPYGEEPAVGAAGPLFAILGFLIFPFIWSIPEALVTAELATTFPGNGGYVIWAHHAFGP 117 (483)
Q Consensus 40 ~r~l~~~~~~~~~i~~~iG--g~~~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~l~~~el~~~~p~~Gg~y~~~~~~~g~ 117 (483)
.|+++++......+++..+ ...+.++..+..|.....+ .+...+. .+..+..+.+.-++.+ .-..++|.++-+|+
T Consensus 2 gr~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~G~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~-~~T~~e~l~~Ryg~ 78 (407)
T TIGR00813 2 GRSLGGWVVAASLFASYISASQFLGLPGAIYAYGFAIGFY-ELGALVL-LIILGWLFVPIFINNG-AYTMPEYLEKRFGK 78 (407)
T ss_pred CCCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHH-HHHHHHH-HHHHHHHHHHHHHHcC-CCchhHHHHHHhCc
Confidence 4788998888888887777 4467788777766422221 1111222 3445566666655544 44789999999998
Q ss_pred -hhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhccccccchHHHHHH-HHHHHHHHHHHhhchhHHHHHHHHHHHHHHHH
Q 044788 118 -FWGSLMGSWKFLSGVINLASYPILCIDYLKLVFPIFASGFSHYLAI-FVVTLVLSFLNYTGLAIVGYTAVTLGVVSLIP 195 (483)
Q Consensus 118 -~~g~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~ 195 (483)
....+.+....+..+...+....+.+..++..++- +.+... +...+.......-|+|...+...+-.++.++.
T Consensus 79 ~~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~gi-----~~~~~~ii~~~i~~~Yt~~GG~~av~~Td~iQ~~i~~~~ 153 (407)
T TIGR00813 79 RILRGLSVLSLILYIFLYMSVDLFSGALLIELITGL-----DLYLSLLLLGAITILYTVFGGLKAVVWTDTIQAVIMILG 153 (407)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-----hHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHH
Confidence 46677778777777778888888888888877652 222222 22223334455568887776655544444443
Q ss_pred HHHHHHHHhcccc-ccc----c---cc----------cCCCC--CCCchHHHHHHHHHH--hcchH-hhhhhhhhccCcC
Q 044788 196 FLFLTVIAIPKID-SIR----W---IS----------LGQNG--VPKNWRLFFNTLFWN--LNFWD-NASTLAGEVEQPQ 252 (483)
Q Consensus 196 ~~~~~i~~~~~~~-~~~----~---~~----------~~~~~--~~~~~~~~~~~~~~a--~~G~e-~~~~~~~E~k~p~ 252 (483)
.++..+..+.+.+ .+. . .+ ..... ....|.-........ ..+.+ ...+-.=-.||+
T Consensus 154 ~i~~~~~~~~~~GG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~qR~~a~ks~- 232 (407)
T TIGR00813 154 TFILPVFAFSEVGGLGTFVEKASQAAPTNPSPDDLYDFFRDPSTSDLPWGAGVFGLPHVALWYWTNQVIVQRCLAAKSA- 232 (407)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcCCCccchhhhccCCCCCcccCCChHHHHhChHHHHHHHhcCHHHhhHHHhcCCH-
Confidence 3333322222111 000 0 00 00000 001111000000000 00000 011112223554
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHh---hccCC--CCC-----CccccHHHHHHHHHcchHHHHHHHHHHHHHHHHHHH
Q 044788 253 RTFPKALFSAGLLTCVAYLLPLLAAT---GAIPL--DQQ-----NWVDGYFAEVAEIIAGKWLKICIEIGACLSIIGLYE 322 (483)
Q Consensus 253 r~~p~a~~~~~~~~~~~y~l~~~~~~---~~~~~--~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (483)
|+.+|+..++.+...+++++..+... ...++ .+. .+.+..+..+.++..++++..++..+.+.+..++..
T Consensus 233 ~~~r~~~~~~~~~~~~~~~~~~l~G~~a~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~lp~~l~gl~~agilaA~mST~~ 312 (407)
T TIGR00813 233 KHAKKGCLISGVLKLLPMFGAVLPGLIARALYTDIDPALAGAVNQNSDQAYPLLVQELMPPGLAGLFLAAILAAVMSTLS 312 (407)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhhhcccCCChhhHHHHHHHHHcCcchHHHHHHHHHHHHHHhhh
Confidence 88899998887766666554433322 12221 111 245567777888888999998888888888888888
Q ss_pred HHhhhhhHHHHHhhhc
Q 044788 323 AQLSNCAYQILGMTNL 338 (483)
Q Consensus 323 ~~~~~~sR~l~~~a~d 338 (483)
+.+.+.+-. .+||
T Consensus 313 s~l~a~ss~---~~~D 325 (407)
T TIGR00813 313 SQLNSASTV---FTMD 325 (407)
T ss_pred hhHHHHHHH---HHHH
Confidence 777766644 4455
No 70
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=98.68 E-value=0.00024 Score=70.12 Aligned_cols=316 Identities=13% Similarity=0.097 Sum_probs=159.0
Q ss_pred cccccccccchhHHHhhhhhhcc-cccCchhhHhh--hChHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCChHHHhHH
Q 044788 36 ITVTSKKLSLLPLIFLIYFEVAG-GPYGEEPAVGA--AGPLFAILGFLIFPFIWSIPEALVTAELATTFPGNGGYVIWAH 112 (483)
Q Consensus 36 ~~~~~r~l~~~~~~~~~i~~~iG-g~~~~~~~~~~--~G~~~~i~~~~~~~~~~~~~~~l~~~el~~~~p~~Gg~y~~~~ 112 (483)
.++.+|+.++++.+.+=.+.+.- ..+.+.....+ .++...+++.+++-++ .......-+..++++-. +.-...|
T Consensus 34 ~~~~~rtWg~~~~~~~W~~~~~nv~~~~~aa~~~~lGLS~~qallai~vG~~i-v~i~m~Lng~~G~~~gI--pFpv~~R 110 (497)
T COG1953 34 TPAEQRTWGWWNYFALWLGMVHNVPTYMLAAGLFELGLSPWQALLAILVGNLI-VAIFMVLNGHAGSKYGI--PFPVLSR 110 (497)
T ss_pred CccccCcchHHHHHHHHHHhhccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HHHHHHhccCcccccCC--CchHHHH
Confidence 45678899999999887776644 33333333222 3344455555555554 22222222222222211 1223566
Q ss_pred HHhCChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh----ccccc----------cchHHHHHHHHHHHH-HHHHHhhc
Q 044788 113 HAFGPFWGSLMGSWKFLSGVINLASYPILCIDYLKLV----FPIFA----------SGFSHYLAIFVVTLV-LSFLNYTG 177 (483)
Q Consensus 113 ~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~----------~~~~~~~~~~~~~~~-~~~i~~~g 177 (483)
..||-..+-.-...-.+.-+..-...+...+..++.+ +|... -+... .+..++.+. -..+-..|
T Consensus 111 aSFGi~Ga~~p~l~R~i~A~~WyGvqty~Gg~av~llL~~i~~~~~~~~~~~~~lg~tt~~-~i~F~ifW~l~~l~~~~g 189 (497)
T COG1953 111 ASFGIYGANFPALIRAIVAIVWYGVQTYAGGLAVNLLLGSIFPSLLIPNTLSPLLGLTTLE-LICFFIFWVLQLLVLFKG 189 (497)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccccccCCccccccCCcHHH-HHHHHHHHHHHHHHHhcC
Confidence 7788766665555555444444455555544444333 33311 12233 333334444 34456679
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCC---CCCCCchHHHHHHHHHHhcchH----hhhhhhhhccC
Q 044788 178 LAIVGYTAVTLGVVSLIPFLFLTVIAIPKIDSIRWISLGQ---NGVPKNWRLFFNTLFWNLNFWD----NASTLAGEVEQ 250 (483)
Q Consensus 178 ~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~a~~G~e----~~~~~~~E~k~ 250 (483)
++..+|++.+......+..+.+.+....+.+..+.....+ .+.+..+..++.........|. ..+-.+++.|+
T Consensus 190 ~~~Ir~~~~~a~p~~~~~~~gl~Iw~~~~a~g~~~~~~~p~~~~~~~~~~w~~~~~~~~~v~~~Atl~lN~~DFsRfa~s 269 (497)
T COG1953 190 MESIRKFETWAGPLVYIAMLGLAIWALVKAGGSSILGELPAGTVSGSNSSWAFLAGIAAWVGFWATLALNIPDFTRFAKS 269 (497)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHHHhcCCcCccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHhcCCchhhcccCC
Confidence 9999999999999888888888888777665532211111 1122333344444333333332 34555666676
Q ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCccccHHHHHHHHHcchHHHH-HHHHHHHHHHHHHHH-HHhhhh
Q 044788 251 PQRTFPKALFSAGLLTCVAYLLPLLAATGAIPLDQQNWVDGYFAEVAEIIAGKWLKI-CIEIGACLSIIGLYE-AQLSNC 328 (483)
Q Consensus 251 p~r~~p~a~~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~ 328 (483)
| |+.-++.++++.+...+..+..+......-.-.-....+|...+ ++........ +..+...++..+... +...++
T Consensus 270 ~-~~~~~gq~~gLPv~~~l~~ligvv~tsa~~~lyG~~~w~P~di~-~~~~~~~~~~fl~~l~~~iati~~Ni~aN~vsp 347 (497)
T COG1953 270 Q-KAQIWGQLVGLPVNFALFSLIGVVVTSASYILYGETIWDPLDIV-ARFLSGFYAAFLAGLTFAVATISTNIAANIVSP 347 (497)
T ss_pred h-hhhhhccchhhhHHHHHHHHHHhhHHHHHHHhhCcccCCHHHHH-HHhccchHHHHHHHHHHHHHHHhhhHHhccCCh
Confidence 6 45556666777766666666555444322111111122454433 3444343443 444444555554332 222222
Q ss_pred hHHHHHhhhcCCCchhhhccCCCCCCCHHHHHHHHHHHHHHH
Q 044788 329 AYQILGMTNLGLLPKVFGSRSSWFHTPWVGIFISTLIALTVS 370 (483)
Q Consensus 329 sR~l~~~a~dg~lP~~~~~~~~~~~~P~~ai~~~~i~~~~~~ 370 (483)
. .--.+.+|+... - .++-+++.++++++.
T Consensus 348 ~-----~D~s~l~Pk~in---~-----krg~liaA~ial~~~ 376 (497)
T COG1953 348 G-----YDLSALFPKYIN---I-----KRGGLIAAIIALLIC 376 (497)
T ss_pred H-----HHHHHhcccccc---h-----hhhHHHHHHHHHHHc
Confidence 2 112245664433 2 245666666666655
No 71
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=98.64 E-value=0.00017 Score=73.04 Aligned_cols=234 Identities=12% Similarity=-0.010 Sum_probs=114.1
Q ss_pred cccccccchhHHHhhhhhhcc-cccCchhhHhh--hChHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCChHHHhHHHH
Q 044788 38 VTSKKLSLLPLIFLIYFEVAG-GPYGEEPAVGA--AGPLFAILGFLIFPFIWSIPEALVTAELATTFPGNGGYVIWAHHA 114 (483)
Q Consensus 38 ~~~r~l~~~~~~~~~i~~~iG-g~~~~~~~~~~--~G~~~~i~~~~~~~~~~~~~~~l~~~el~~~~p~~Gg~y~~~~~~ 114 (483)
+.+|+.++++.+.+=++..+. ..+..+..... -+....+++.+++.++ ........+..+.++-. +.....|..
T Consensus 9 ~~~R~~~~~~~~~~W~~~~~~v~~~~~Ga~l~~~GLs~~~ailai~lG~~i-~~~~~~l~~~~G~r~Gl--~~~v~sR~~ 85 (442)
T TIGR00800 9 EEERTWSFLNYFSLWLGAAFNIATWAIGALGLPLGLSWWQSVIAIILGNLL-GGIFVALNSRAGAKYGL--PFPVLSRAS 85 (442)
T ss_pred cccCCccHHHHHHHHHHHhhhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH-HHHHHHHhhhhHHHhCC--Ccchhhhhh
Confidence 344566788887777765544 22333332222 2233455555555543 22222223334443322 355678889
Q ss_pred hCChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhccccccc----hH----HHHHHHHHHHHHHH--HHhhchhHHHHH
Q 044788 115 FGPFWGSLMGSWKFLSGVINLASYPILCIDYLKLVFPIFASG----FS----HYLAIFVVTLVLSF--LNYTGLAIVGYT 184 (483)
Q Consensus 115 ~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~----~~~~~~~~~~~~~~--i~~~g~~~~~~~ 184 (483)
||.+-+.+.+....+..+...+..+...++.+...+....+. .+ .....+++...+.. ....|.|...+.
T Consensus 86 FG~~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~~~~~~~~t~~~~~~~~i~~~l~~~~~~~~g~~~~~~~ 165 (442)
T TIGR00800 86 FGIYGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGYLHLGNGMTTLELICFIIFWALVLVFLFFFGYKIRHLF 165 (442)
T ss_pred hhhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccccccCCcccHHHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 999999999998888888888888888877665554332111 00 12222222222222 344555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccc-cccccccCC-CCCCCchHHHHHHH----HHHhcchHhhhhhhhhccCcCcchHHH
Q 044788 185 AVTLGVVSLIPFLFLTVIAIPKID-SIRWISLGQ-NGVPKNWRLFFNTL----FWNLNFWDNASTLAGEVEQPQRTFPKA 258 (483)
Q Consensus 185 ~~~~~~~~i~~~~~~~i~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~----~~a~~G~e~~~~~~~E~k~p~r~~p~a 258 (483)
+.......++.++... +...+.+ ......... ...+.....++... -+..++....+-+++..|++ |+..++
T Consensus 166 ~~~a~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~DysRy~~~~-~~~~~~ 243 (442)
T TIGR00800 166 EWLAVVPPFAAFGMLI-WALSKAHGKGPLGELTGTLHGSTGAWAFLYALSLVIGSFATWATNAPDFTRFGKSK-KTAIWG 243 (442)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHcCCCCccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHcCchhhhhhcCCc-cchHHH
Confidence 5544444333333332 2222222 111111111 01112223333221 12233444567777888876 445566
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 044788 259 LFSAGLLTCVAYLLPLLA 276 (483)
Q Consensus 259 ~~~~~~~~~~~y~l~~~~ 276 (483)
...+.........+....
T Consensus 244 ~~~~~~~~~~~~~~~g~~ 261 (442)
T TIGR00800 244 QFLALPGGFTLTCFFGIL 261 (442)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666555444444333
No 72
>PRK12488 acetate permease; Provisional
Probab=98.59 E-value=0.00055 Score=71.13 Aligned_cols=149 Identities=12% Similarity=0.023 Sum_probs=88.3
Q ss_pred ccccccchhHHHhhhhhhcc--cccCchhhHhhhChHHHH--HHHHHHHHHHHHHHHHHHHHhhccCCCCChHHHhHHHH
Q 044788 39 TSKKLSLLPLIFLIYFEVAG--GPYGEEPAVGAAGPLFAI--LGFLIFPFIWSIPEALVTAELATTFPGNGGYVIWAHHA 114 (483)
Q Consensus 39 ~~r~l~~~~~~~~~i~~~iG--g~~~~~~~~~~~G~~~~i--~~~~~~~~~~~~~~~l~~~el~~~~p~~Gg~y~~~~~~ 114 (483)
-.|+++++.......++.++ ...+.++..+..|..... +++.++ .....+.+++--++... =..++|.++-
T Consensus 65 aGR~l~~~~~~~si~at~~Sa~sflG~~G~~y~~G~~~~~~~~g~~~g----~~~~~~~~a~~lr~~g~-~T~~d~l~~R 139 (549)
T PRK12488 65 AGGGLTGMQNGLAIAGDMISAASFLGISAMMFMNGYDGLLYALGVLAG----WPIILFLIAERLRNLGK-YTFADVVSYR 139 (549)
T ss_pred eCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHH----HHHHHHHHHHHHHHCCC-cchHHHHHHH
Confidence 46899999998888887776 346777777776653322 222221 11123334444344332 3677888888
Q ss_pred hC-ChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHH
Q 044788 115 FG-PFWGSLMGSWKFLSGVINLASYPILCIDYLKLVFPIFASGFSHYLAIFVVTLVLSFLNYTGLAIVGYTAVTLGVVSL 193 (483)
Q Consensus 115 ~g-~~~g~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i 193 (483)
|| +....+.+....+..+........+.+..++.+++. + .+.. +.+...+.......-|+|...+.+.+=.++.+
T Consensus 140 f~s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~gi-~-~~~~--iii~~~i~~~Yt~~GGm~av~~td~iQ~~im~ 215 (549)
T PRK12488 140 LAQGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFGI-S-YLYA--VVIVGALMVLYVTFGGMLATTWVQIIKAVLLL 215 (549)
T ss_pred cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-C-HHHH--HHHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Confidence 87 568888888777777777777777778777777642 1 1111 11222233334445688877776655444444
Q ss_pred HHH
Q 044788 194 IPF 196 (483)
Q Consensus 194 ~~~ 196 (483)
+..
T Consensus 216 ~~~ 218 (549)
T PRK12488 216 SGT 218 (549)
T ss_pred HHH
Confidence 443
No 73
>PRK10484 putative transporter; Provisional
Probab=98.58 E-value=0.0014 Score=67.79 Aligned_cols=289 Identities=13% Similarity=0.069 Sum_probs=139.4
Q ss_pred cccccccchhHHHhhhhhhcc--cccCchhhHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCChHHHhHHHHh
Q 044788 38 VTSKKLSLLPLIFLIYFEVAG--GPYGEEPAVGAAGPLFAILGFLIFPFIWSIPEALVTAELATTFPGNGGYVIWAHHAF 115 (483)
Q Consensus 38 ~~~r~l~~~~~~~~~i~~~iG--g~~~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~l~~~el~~~~p~~Gg~y~~~~~~~ 115 (483)
.-.|+++++-..+...++.++ ...+.++..+..|.....+.+ ...+. .++.++.++.--++. ..=..++|.++-+
T Consensus 35 lagR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~~G~~~~~~~~-~~~~~-~~~~~~~~~p~~~r~-~~~T~~e~l~~Ry 111 (523)
T PRK10484 35 LAGRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYASGMSVMAWEV-TAAIA-LIILALIFLPRYLKS-GITTIPDFLEERY 111 (523)
T ss_pred ecCCCCchHHHHHHHHHHHhhHHHHhcchHHHHHhCHHHHHHHH-HHHHH-HHHHHHHHHHHHHhc-CCccHHHHHHHhc
Confidence 457899999887777777666 346778877777763322222 11122 222344344332333 2347889999999
Q ss_pred CChhHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHhcc---ccc-cchHHHHHH-HH-HHHHHHHHHhhchhHHHHHHHHH
Q 044788 116 GPFWGSLMGSWKFLSGVIN-LASYPILCIDYLKLVFP---IFA-SGFSHYLAI-FV-VTLVLSFLNYTGLAIVGYTAVTL 188 (483)
Q Consensus 116 g~~~g~~~g~~~~~~~~~~-~~~~~~~~~~~l~~~~~---~~~-~~~~~~~~~-~~-~~~~~~~i~~~g~~~~~~~~~~~ 188 (483)
|++...+.+....+.+... .+......+..++..+. ..+ +......+. ++ ..+.......-|.|...+...+=
T Consensus 112 g~~~~~~~~~~~~i~~~~~~~~~~l~~g~~~l~~i~~~~~~~gi~~~~~~~~~~~~~~~i~~~Yt~~GGl~aV~~TD~iQ 191 (523)
T PRK10484 112 DKTTRRIVSILFLIGYVVSFLPIVLYSGALALNSLFHVSELLGISYGAAIWLLVWLIGIIGAIYAVFGGLKAVAVSDTIN 191 (523)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Confidence 9876666555544444332 22222223333333221 011 111111111 11 12223444456777777655444
Q ss_pred HHHHHHHHHHHHHHHhcc---------------cccccccccCCCCCCCchHHHHHHHHH-HhcchHhhhhhh---hhcc
Q 044788 189 GVVSLIPFLFLTVIAIPK---------------IDSIRWISLGQNGVPKNWRLFFNTLFW-NLNFWDNASTLA---GEVE 249 (483)
Q Consensus 189 ~~~~i~~~~~~~i~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-a~~G~e~~~~~~---~E~k 249 (483)
.++.++..++..+..+.. .+++.++..+....+..|...+....+ .+.++-.-.++. =-.|
T Consensus 192 ~vim~i~~iiv~~~~l~~~g~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~qR~~aak 271 (523)
T PRK10484 192 GIGLLIGGLLVPVFGLIALGDGSFMQGLEQLTTVHPEKLNSIGGATDPVPFPTLFTGLILVNLFYWCTNQSIVQRALGAK 271 (523)
T ss_pred HHHHHHHHHHHHHHHHHHhCCccHHhHHHHHhhcCchhhcccCCCCCCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHhCC
Confidence 444433322222111111 011112111111111233333222111 111111112222 2236
Q ss_pred CcCcchHHHHHHHHHHHHHHHHHHH---HHHhhccCCCCCCccccHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhh
Q 044788 250 QPQRTFPKALFSAGLLTCVAYLLPL---LAATGAIPLDQQNWVDGYFAEVAEIIAGKWLKICIEIGACLSIIGLYEAQLS 326 (483)
Q Consensus 250 ~p~r~~p~a~~~~~~~~~~~y~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (483)
|+ |+..|+.+++.....+.+.... .......|+ +..+++..+..+..+..++++..++..+++.+..++..+.+.
T Consensus 272 ~~-k~a~~~~~~~~~~~~~~~~~~~~~G~~a~~~~p~-~~~~~d~~~p~~~~~~lp~~l~Gl~~a~ilAA~mST~~s~l~ 349 (523)
T PRK10484 272 NL-AEGQKGALLAAFFKLLGPLILVLPGIIAFHLYGD-GLPNADMAYPTLVNDVLPVPLVGFFAAVLFGAILSTFNGFLN 349 (523)
T ss_pred CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccCChhhHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 64 7788888877654444333322 222223333 234456677788878888888888888888888888888887
Q ss_pred hhhHH
Q 044788 327 NCAYQ 331 (483)
Q Consensus 327 ~~sR~ 331 (483)
+.+-.
T Consensus 350 s~st~ 354 (523)
T PRK10484 350 SASTL 354 (523)
T ss_pred HHHHH
Confidence 76643
No 74
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=98.57 E-value=0.00046 Score=68.08 Aligned_cols=331 Identities=13% Similarity=0.117 Sum_probs=175.1
Q ss_pred hhhhcccc-cCchhhHhh-hCh--HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCChHHHhHHHHhCChhHHHHHHHHH
Q 044788 53 YFEVAGGP-YGEEPAVGA-AGP--LFAILGFLIFPFIWSIPEALVTAELATTFPGNGGYVIWAHHAFGPFWGSLMGSWKF 128 (483)
Q Consensus 53 i~~~iGg~-~~~~~~~~~-~G~--~~~i~~~~~~~~~~~~~~~l~~~el~~~~p~~Gg~y~~~~~~~g~~~g~~~g~~~~ 128 (483)
++.-.|.. .-.|..+.. +|. ....+++.+.++..-+...+..+ . ..|+.++..+| .||+.|.+.....+
T Consensus 18 FamFFGAGNLIFPp~LG~~aG~~~~~a~~GF~iT~VglPlLgiiava-----~-~~g~~~~l~~r-v~~~f~~~f~~~i~ 90 (439)
T PRK15433 18 FALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVGLPVLTVVALA-----K-VGGGVDSLSTP-IGKVAGVLLATVCY 90 (439)
T ss_pred HHHHhcCcchhccHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHh-----h-cCCCHHHHhhh-cchHHHHHHHHHHH
Confidence 33334633 455666655 554 34577777777642333222222 2 22566665555 46777776655443
Q ss_pred HH--hhhhHHHHHHHHHH-HHHHhccccccchHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044788 129 LS--GVINLASYPILCID-YLKLVFPIFASGFSHYLAIFVVTLVLSFLNYTGLAIVGYTAVTLGVVSLIPFLFLTVIAIP 205 (483)
Q Consensus 129 ~~--~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~ 205 (483)
+. -....+=.+...-+ .+.-++|+ . .....+.++++..+..++.++.-|...++-.+++.+.++.++++++.++.
T Consensus 91 l~IGP~~aiPRtaavsfEm~i~p~~~~-~-~~~~~ifs~iFF~i~~~l~l~p~klvd~iGK~LTP~LL~~l~~lii~~i~ 168 (439)
T PRK15433 91 LAVGPLFATPRTATVSFEVGIAPLTGD-S-ALPLFIYSLVYFAIVILVSLYPGKLLDTVGNFLAPLKIIALVILSVAAIV 168 (439)
T ss_pred HHHhhccccCCccccchhheeeccCCc-c-cHHHHHHHHHHHHHHHHHHcChhhHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 32 12211111111111 12222332 1 24556677788888888888899999999999999888888887777766
Q ss_pred ccccccccccC-CCCC--CCch------HHHHHHHHHHhcchHhhhhh-hhhccCcCcchHHHH----HHHHHHHHHHHH
Q 044788 206 KIDSIRWISLG-QNGV--PKNW------RLFFNTLFWNLNFWDNASTL-AGEVEQPQRTFPKAL----FSAGLLTCVAYL 271 (483)
Q Consensus 206 ~~~~~~~~~~~-~~~~--~~~~------~~~~~~~~~a~~G~e~~~~~-~~E~k~p~r~~p~a~----~~~~~~~~~~y~ 271 (483)
+...+...+.+ .... ..++ ...+.+..|+.. .+..+ ....||+ |++.|.. +.+.+...+.|.
T Consensus 169 ~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMDalaal~Fg~i---ii~~i~~~G~~~~-~~~~k~t~~ag~ia~~~L~~vY~ 244 (439)
T PRK15433 169 WPAGSISTATEAYQNAAFSNGFVNGYLTMDTLGAMVFGIV---IVNAARSRGVTEA-RLLTRYTVWAGLMAGVGLTLLYL 244 (439)
T ss_pred cCCCCCCCcchhhhhhhHHHHHHhhHHHHHHHHHHHHHHH---HHHHHHHcCCCCH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 53221111100 0000 0011 111222333222 22222 2235554 3344444 444444555555
Q ss_pred HHHHHHhhccC-CCCCCccccHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCCCchhhhccCC
Q 044788 272 LPLLAATGAIP-LDQQNWVDGYFAEVAEIIAGKWLKICIEIGACLSIIGLYEAQLSNCAYQILGMTNLGLLPKVFGSRSS 350 (483)
Q Consensus 272 l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~~~~~~~ 350 (483)
..........+ .++..+.........+...|+++..++.+.+.++|+++..+...+.++.... .-+
T Consensus 245 gL~~lGa~s~~~~~~~~~g~~il~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~-------------~~~ 311 (439)
T PRK15433 245 ALFRLGSDSASLVDQSANGAAILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQ-------------YVP 311 (439)
T ss_pred HHHHHhcCCcccccCCCcHhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------------hcC
Confidence 55554443322 1212123334555566777899999999999999999999999888764333 211
Q ss_pred CCCCCH-HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhCCCCCCCccc
Q 044788 351 WFHTPW-VGIFISTLIALTVSYMDFTNIISCVNFLYSLGMLLEFASFL--WLRKKLPATKRPFRV 412 (483)
Q Consensus 351 ~~~~P~-~ai~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~ 412 (483)
.|+ ..+++..+++..+...+++.++....-...+.|-+.+.-.+ ..++..++.++.||.
T Consensus 312 ---isY~~~v~i~~l~S~~lSn~G~~~II~~s~PiL~~iYP~~IvLill~l~~~~~~~~~~~y~~ 373 (439)
T PRK15433 312 ---LSYRTLVFILGGFSMVVSNLGLSQLIQISVPVLTAIYPPCIALVVLSFTRSWWHNSSRVIAP 373 (439)
T ss_pred ---CcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCceehH
Confidence 333 33455566777777788998888877666666655542222 123333333445664
No 75
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=98.57 E-value=0.00087 Score=64.49 Aligned_cols=337 Identities=18% Similarity=0.195 Sum_probs=177.6
Q ss_pred Hhhhhhhcc-cccCchhhHhh-hCh--HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCChHHHhHHHHhCChhHHHHHH
Q 044788 50 FLIYFEVAG-GPYGEEPAVGA-AGP--LFAILGFLIFPFIWSIPEALVTAELATTFPGNGGYVIWAHHAFGPFWGSLMGS 125 (483)
Q Consensus 50 ~~~i~~~iG-g~~~~~~~~~~-~G~--~~~i~~~~~~~~~~~~~~~l~~~el~~~~p~~Gg~y~~~~~~~g~~~g~~~g~ 125 (483)
++.++.-.| |=.-.|..... +|. ....+++++.++..-+......+ ..||.++=..+-.||..|.+..-
T Consensus 12 fmLFalFFGAGNlIFPP~LG~~aG~~~~~A~lGFllTgVglPlLgiIa~a-------~~g~~~~~l~~~i~~~fg~~f~~ 84 (431)
T COG1114 12 FMLFALFFGAGNLIFPPMLGLHAGEHVWPAILGFLLTGVGLPLLGIIAVA-------LYGGGVESLATRIGPWFGVLFAI 84 (431)
T ss_pred HHHHHHHhcCCCccCChhhhhhcCccHHHHHHHHHHHHhhHHHHHHHHhh-------ccCCCHHHHhhhccchHHHHHHH
Confidence 333444446 32444555544 443 45677788877642222222211 34444444445567888777665
Q ss_pred HHHHH--hhhhHHHHHHHHHHHHHHhccccc--cchHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHH
Q 044788 126 WKFLS--GVINLASYPILCIDYLKLVFPIFA--SGFSHYLAIFVVTLVLSFLNYTGLAIVGYTAVTLGVVSLIPFLFLTV 201 (483)
Q Consensus 126 ~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~~~~~~i 201 (483)
..++. -....+=.+.. .|=....|... +.....+-++++..+..++++...|...++-.+++-+.++.+++..+
T Consensus 85 ~iyLsIGPffAiPRt~~v--sfe~~i~p~~~~~~~~~l~ifs~ifF~ia~~~sl~psklid~vGk~LTPilLv~l~il~i 162 (431)
T COG1114 85 AIYLSIGPFFAIPRTGAV--SFEVGISPLLGDSSLPSLFIFSVIFFAIAYLFSLNPSKLIDRVGKFLTPILLVLLLILVI 162 (431)
T ss_pred HHHHHhcccccCCcccch--hHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 54433 11111111111 11111222222 33446677778888888899999999999999999999888877777
Q ss_pred HHhcccccccccccC------C-CCCCCchHHHHHHHHHHhcchHhhhhhhhhccCcCcchHHHHHHHHHHH----HHHH
Q 044788 202 IAIPKIDSIRWISLG------Q-NGVPKNWRLFFNTLFWNLNFWDNASTLAGEVEQPQRTFPKALFSAGLLT----CVAY 270 (483)
Q Consensus 202 ~~~~~~~~~~~~~~~------~-~~~~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~p~r~~p~a~~~~~~~~----~~~y 270 (483)
..+.+.+...-.+.+ . .|...|+..+=.-..++|...-..+-=..-.+++ |+..|-.+.+-.+. ...|
T Consensus 163 ~~~~~p~g~~~~a~~~y~~~pf~~GfleGY~TMDaLAal~FgivIv~alk~~g~~~~-~~~~~~~~~aglIa~i~La~iY 241 (431)
T COG1114 163 AAIIPPAGPISAASGAYQSQPFSKGFLEGYLTMDALAALAFGIVIVNALKSKGVTTK-KQIIKYTIKAGLIAAILLALIY 241 (431)
T ss_pred HHHhCCCCCcccccHHHHhChHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhccCcH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 665443322111110 0 0001111111111223333322222222233333 34444444433333 3333
Q ss_pred HHHHHHHhhccCCC---CCCccccHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCCCchhhhc
Q 044788 271 LLPLLAATGAIPLD---QQNWVDGYFAEVAEIIAGKWLKICIEIGACLSIIGLYEAQLSNCAYQILGMTNLGLLPKVFGS 347 (483)
Q Consensus 271 ~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~~~~ 347 (483)
....... ..+.+ ..++...-+.+..+...|+.+..++...+.++|+++..+...+++. .|+|
T Consensus 242 ~~L~ylG--a~s~~~~~~~~nG~~IL~~~s~~~fG~~G~~lL~~iv~lACLTTaiGLi~a~ae-------------fF~~ 306 (431)
T COG1114 242 LSLFYLG--ATSASAAGLAANGGQILSAYSQHLFGSYGSILLGLIVFLACLTTAVGLIVACAE-------------FFSK 306 (431)
T ss_pred HHHHHhc--cchHhhcccccchHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHH
Confidence 3333222 22221 1223344577777888899999999999999999999988887773 5666
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhCCCCCCCccc
Q 044788 348 RSSWFHTPWVGIFISTLIALTVSYMDFTNIISCVNFLYSLGMLLEFA--SFLWLRKKLPATKRPFRV 412 (483)
Q Consensus 348 ~~~~~~~P~~ai~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~r~~~~~~~~~~~~ 412 (483)
.-|| -+......+..+.+.++.-.+++.++....-.....|-+.+. .....+|.-+..++.|+.
T Consensus 307 ~~p~-~SY~~~v~if~i~sflvan~GL~~Ii~isvPvL~~iYPiaI~Lv~l~~~~k~~~~~~~~y~~ 372 (431)
T COG1114 307 LVPK-LSYKTWVIIFTLISFLVANLGLEQIIKISVPVLTAIYPIAIALVLLSFARKLWKNSKRVYRL 372 (431)
T ss_pred hccc-ccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCcchhHHH
Confidence 6652 222233344566667777778888888877666666665542 222344444443444554
No 76
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=98.56 E-value=0.0016 Score=67.03 Aligned_cols=290 Identities=12% Similarity=0.015 Sum_probs=135.8
Q ss_pred cccccccchhHHHhhhhhhcc--cccCchhhHhhhChHHHHHHHHHHHHHHHHHHHHHHH----HhhccCCCCChHHHhH
Q 044788 38 VTSKKLSLLPLIFLIYFEVAG--GPYGEEPAVGAAGPLFAILGFLIFPFIWSIPEALVTA----ELATTFPGNGGYVIWA 111 (483)
Q Consensus 38 ~~~r~l~~~~~~~~~i~~~iG--g~~~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~l~~~----el~~~~p~~Gg~y~~~ 111 (483)
.-.|+++++.......++.++ ...+.|+..+..|... .+..+...+. .+.....+. .-..+.+..-..++|.
T Consensus 37 lagr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y~~G~~~-~~~~~~~~~~-~~l~~~~~~~~l~~~~~~~~~~~T~~e~l 114 (502)
T PRK15419 37 LGGRSLGPFVTALSAGASDMSGWLLMGLPGAVFLSGISE-SWIAIGLTLG-AWINWKLVAGRLRVHTEYNNNALTLPDYF 114 (502)
T ss_pred eeCCCccHHHHHHHHHHHHHHHHHHHHhhHHHHHcCHHH-HHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCceeHHHHH
Confidence 346899998888777777766 3467788777777633 2211111111 111111111 1112233445788999
Q ss_pred HHHhCC---hhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Q 044788 112 HHAFGP---FWGSLMGSWKFLSGVINLASYPILCIDYLKLVFPIFASGFSHYLAIFVVTLVLSFLNYTGLAIVGYTAVTL 188 (483)
Q Consensus 112 ~~~~g~---~~g~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~ 188 (483)
++-+|+ ....+.+....+......+....+.+..+...++. +. ...+.+..........+-|+|...+...+=
T Consensus 115 ~~Ry~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~gi---~~-~~~iii~~~iv~iYt~~GGl~aV~~TD~iQ 190 (502)
T PRK15419 115 TGRFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFGM---SY-ETALWAGAAATILYTFIGGFLAVSWTDTVQ 190 (502)
T ss_pred HHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CH-HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 999985 34545555555555555566666667777766552 11 112222223344445556777777665544
Q ss_pred HHHHHHHHHHHHHHHhcc-ccccc----c---cccCCC-CCCCchHHHHHHHHHHhcchHhhhhhhhh---ccCcCcchH
Q 044788 189 GVVSLIPFLFLTVIAIPK-IDSIR----W---ISLGQN-GVPKNWRLFFNTLFWNLNFWDNASTLAGE---VEQPQRTFP 256 (483)
Q Consensus 189 ~~~~i~~~~~~~i~~~~~-~~~~~----~---~~~~~~-~~~~~~~~~~~~~~~a~~G~e~~~~~~~E---~k~p~r~~p 256 (483)
.++.++..++..+..+.+ +..+. . .+...+ .+..++........+.+ |.-..+++... .||+ |+..
T Consensus 191 ~~imi~g~i~~~~~~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~p~~~qR~~aak~~-~~~~ 268 (502)
T PRK15419 191 ASLMIFALILTPVIVIISVGGFGDSLEVIKQKSIENVDMLKGLNFVAIISLMGWGL-GYFGQPHILARFMAADSH-HSIV 268 (502)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcCccccCcccCCCHHHHHHHHHHHH-HHcCChHHHHhheecCCh-HHHH
Confidence 444443333322222111 11000 0 000000 01122322222111211 11112222222 2443 3233
Q ss_pred HHH----HHHHHHHHHHHHHHHHHHhh--ccCCCC---CCccccHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhh
Q 044788 257 KAL----FSAGLLTCVAYLLPLLAATG--AIPLDQ---QNWVDGYFAEVAEIIAGKWLKICIEIGACLSIIGLYEAQLSN 327 (483)
Q Consensus 257 ~a~----~~~~~~~~~~y~l~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (483)
++. .+.........++....... ..|..+ ..+.+..+..+..+..++++..++..+++.+..++..+.+.+
T Consensus 269 ~a~~~~~~~~~~~~~~~~~ig~~~~~~~~~~p~~~~~~~~~~d~~~~~l~~~~lp~~l~gl~~a~ilAA~mST~~s~l~a 348 (502)
T PRK15419 269 HARRISMTWMILCLAGAVAVGFFGIAYFNEHPAVAGAVNQNAERVFIELAQILFNPWIAGILLSAILAAVMSTLSCQLLV 348 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCCCcchHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 22222211111111111111 112110 123455677777778889988888888888888888888877
Q ss_pred hhHHHHHhhhc
Q 044788 328 CAYQILGMTNL 338 (483)
Q Consensus 328 ~sR~l~~~a~d 338 (483)
.+-. .++|
T Consensus 349 ~ss~---~~~D 356 (502)
T PRK15419 349 CSSA---ITED 356 (502)
T ss_pred HHHH---HHHH
Confidence 7643 4455
No 77
>PRK09395 actP acetate permease; Provisional
Probab=98.52 E-value=0.00096 Score=69.44 Aligned_cols=151 Identities=13% Similarity=0.047 Sum_probs=84.2
Q ss_pred cccccccchhHHHhhhhhhcc--cccCchhhHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCChHHHhHHHHh
Q 044788 38 VTSKKLSLLPLIFLIYFEVAG--GPYGEEPAVGAAGPLFAILGFLIFPFIWSIPEALVTAELATTFPGNGGYVIWAHHAF 115 (483)
Q Consensus 38 ~~~r~l~~~~~~~~~i~~~iG--g~~~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~l~~~el~~~~p~~Gg~y~~~~~~~ 115 (483)
.-.|+++++......+++.++ ...+.++..+..|..... ..+...+. .....+.+++--++.. .=..++|.++-|
T Consensus 66 ~agr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~~G~~~~~-~~~~~~~g-~~~~~~~~~~~~r~~g-~~T~~d~l~~Ry 142 (551)
T PRK09395 66 TAGGGITGFQNGLAIAGDYMSAASFLGISALVFTSGYDGLI-YSIGFLVG-WPIILFLIAERLRNLG-KYTFADVASYRL 142 (551)
T ss_pred hcCCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHhCHHHHH-HHHHHHHH-HHHHHHHHHHHHhhCC-CccHHHHHHHHc
Confidence 356889988877777777666 346777777776763322 11111111 1112233333323322 235667777888
Q ss_pred C-ChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHH
Q 044788 116 G-PFWGSLMGSWKFLSGVINLASYPILCIDYLKLVFPIFASGFSHYLAIFVVTLVLSFLNYTGLAIVGYTAVTLGVVSLI 194 (483)
Q Consensus 116 g-~~~g~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~ 194 (483)
| +....+.+....+..+........+.+..++.+++- + . ...+.+...+.......-|+|...+.+.+=.++.++
T Consensus 143 gs~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~gi-~--~-~~~ili~~~i~~iYt~~GGm~av~~TD~iQ~iim~~ 218 (551)
T PRK09395 143 KQGPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLFGL-N--Y-HVAVVLVGVLMMVYVLFGGMLATTWVQIIKAVLLLS 218 (551)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-C--H-HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence 8 558888888777766666677777777777776542 1 1 112222223334445556888777665544444444
Q ss_pred H
Q 044788 195 P 195 (483)
Q Consensus 195 ~ 195 (483)
.
T Consensus 219 g 219 (551)
T PRK09395 219 G 219 (551)
T ss_pred H
Confidence 3
No 78
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=98.51 E-value=0.00034 Score=71.54 Aligned_cols=290 Identities=12% Similarity=0.027 Sum_probs=151.3
Q ss_pred ccccccccchhHHHhhhhhh-cc--cccCchhhHhhhChHHHHHHHH--HHHHHHHHHHHHHHHHhhccCCCCChHHHhH
Q 044788 37 TVTSKKLSLLPLIFLIYFEV-AG--GPYGEEPAVGAAGPLFAILGFL--IFPFIWSIPEALVTAELATTFPGNGGYVIWA 111 (483)
Q Consensus 37 ~~~~r~l~~~~~~~~~i~~~-iG--g~~~~~~~~~~~G~~~~i~~~~--~~~~~~~~~~~l~~~el~~~~p~~Gg~y~~~ 111 (483)
-.-.|+++.+ ..++..+.. .+ ..++.|+..+..|.....+... ++..+.....+--..+++ +-++.=..++|.
T Consensus 34 ~~~gR~lg~~-v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~-~~~~~~T~~d~l 111 (493)
T COG0591 34 FLGGRSLGPF-VYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLA-KARGATTIPDFL 111 (493)
T ss_pred hccCCcCChH-HHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccCCccHHHHH
Confidence 3456888888 555555433 33 3468888888877744333222 233322444455566777 556667899999
Q ss_pred HHHhC-ChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Q 044788 112 HHAFG-PFWGSLMGSWKFLSGVINLASYPILCIDYLKLVFPIFASGFSHYLAIFVVTLVLSFLNYTGLAIVGYTAVTLGV 190 (483)
Q Consensus 112 ~~~~g-~~~g~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~ 190 (483)
++-|| +....+.+....+..+...+....+.+..+...++ .+........+.++......--++++-++..+|.....
T Consensus 112 ~~Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g-i~~~~~~~~~~~~v~~Yt~~gG~~av~~Td~iqg~im~ 190 (493)
T COG0591 112 EARFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG-ISYVTGILIGALIVALYTFLGGLRAVVWTDFIQGLIML 190 (493)
T ss_pred HHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHH
Confidence 99999 89999999999999999999999999998877776 33222222333333333333333444455555544443
Q ss_pred HHHHHHHHHHHHH---hcc---c--cccc-ccccCCCCCCCchHHHHHH------HHHHhcchHhhhhhhhhccCcCc--
Q 044788 191 VSLIPFLFLTVIA---IPK---I--DSIR-WISLGQNGVPKNWRLFFNT------LFWNLNFWDNASTLAGEVEQPQR-- 253 (483)
Q Consensus 191 ~~i~~~~~~~i~~---~~~---~--~~~~-~~~~~~~~~~~~~~~~~~~------~~~a~~G~e~~~~~~~E~k~p~r-- 253 (483)
+.+..+....... +.. . ..+. ....+.++ ...+...... ....+...+..+..-. .|+++|
T Consensus 191 i~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~i~~r~~~-~~~~~~~~ 268 (493)
T COG0591 191 IALIVIPILVLILFGGFGELFAVLASLAPLFLTHPFDG-ALSPIYIISLIAWGTLFLGYFGQPHILPRFMA-AKSIKSLP 268 (493)
T ss_pred HHHHHHHHHHHhhcccHHHHHHHHHhcccccccCcccc-cchHHHHHHHHHHHHHHhhhhcCchhhhhhhh-hccHhhhH
Confidence 3333322222221 110 0 0000 00011111 1111111111 1222333333343333 444422
Q ss_pred -chHHHHHHHHHHHHHH-HHHHHHHHhhcc-CCC---CCCccccHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhh
Q 044788 254 -TFPKALFSAGLLTCVA-YLLPLLAATGAI-PLD---QQNWVDGYFAEVAEIIAGKWLKICIEIGACLSIIGLYEAQLSN 327 (483)
Q Consensus 254 -~~p~a~~~~~~~~~~~-y~l~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (483)
...++.+...+.+... +++......... +++ ...+.+..+..+.....+|+...++...++.+..++..+....
T Consensus 269 ~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~g~~~~ailaAvmSt~ss~ll~ 348 (493)
T COG0591 269 KSARLAGILWPLYCLLGAFLLGLLGIAYFPLLPDLSVPLLNPELVFPYLILALFPPWIAGLLLAAILAAVMSTASSQLLV 348 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2223333333333222 222211111111 111 1224455688888888999999888888888777777766665
Q ss_pred hhHH
Q 044788 328 CAYQ 331 (483)
Q Consensus 328 ~sR~ 331 (483)
.+-.
T Consensus 349 ~ss~ 352 (493)
T COG0591 349 ASSA 352 (493)
T ss_pred hhHH
Confidence 5543
No 79
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=98.50 E-value=0.0017 Score=64.43 Aligned_cols=244 Identities=14% Similarity=0.006 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCChHHHhHHHHhCChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcccc
Q 044788 74 FAILGFLIFPFIWSIPEALVTAELATTFPGNGGYVIWAHHAFGPFWGSLMGSWKFLSGVINLASYPILCIDYLKLVFPIF 153 (483)
Q Consensus 74 ~~i~~~~~~~~~~~~~~~l~~~el~~~~p~~Gg~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 153 (483)
..+++.+++.++..++ ....+..+.++.. +.....|..||.+.+.+......+..+...+......++.+....+..
T Consensus 30 ~ai~aiilG~~i~~~~-~~l~~~~G~~~Gl--~~~v~sR~~FG~~Gs~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~~~ 106 (386)
T TIGR02358 30 RGLLAILLGHLVGVLL-LSAAGVIGADTGL--SAMGSLKLSLGSKGSVLPSLLNLLQLVGWTAVMIIVGAKAASLLGGRL 106 (386)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHhhcccCc--CHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455554431222 2223344444322 366678889999999999999888888888888888888887776432
Q ss_pred ccchHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCCCCchHHHHHHHHH
Q 044788 154 ASGFSHYLAIFVVTLVLSFLNYTGLAIVGYTAVTLGVVSLIPFLFLTVIAIPKIDSIRWISLGQNGVPKNWRLFFNTLFW 233 (483)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (483)
.+........+++.++.......|.|...+++.+...+..+..+........+.+.+... +.++ +.++........-
T Consensus 107 ~~~~~~~~~~~i~~~l~~~~~~~G~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~-~~s~~~~~~~~~~ 183 (386)
T TIGR02358 107 FGEESPMLWILIVGILVTLWLLSGPLAFVWLNNWSVWLLLIATLWLLVVVFSKADLSELW--NRAG-DMSFAVAVELVIA 183 (386)
T ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhc--CCCC-CccHHHHHHHHHH
Confidence 111111222233333455666789999999998888777766655554444443322111 1111 2344333322111
Q ss_pred H-hcchHhhhhhhhhccCcCcchHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCccccHHHHHHHHHcchHHHHHHHHH
Q 044788 234 N-LNFWDNASTLAGEVEQPQRTFPKALFSAGLLTCVAYLLPLLAATGAIPLDQQNWVDGYFAEVAEIIAGKWLKICIEIG 312 (483)
Q Consensus 234 a-~~G~e~~~~~~~E~k~p~r~~p~a~~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (483)
. -.+....+.+++..|+| |+.-++..++..+...+..+.........+. .+|...+. ..+.. .+..+.
T Consensus 184 ~~~swa~~~~DysRy~k~~-~~~~~~~~~G~~i~~~~~~~~G~~~~~a~~~------~d~~~~~~-~~g~~---~~~~~~ 252 (386)
T TIGR02358 184 MPLSWLPLIADYTRFARNP-RHVFLGTVLGYFIGSCWMYFLGLAVTLATGQ------TDIISILA-GAGLG---IPALLI 252 (386)
T ss_pred HHHHHHHHccchhhhcCCC-cceehHHHHHHHHHHHHHHHHHHHHHHhcCC------CCHHHHHH-hccHH---HHHHHH
Confidence 1 12223366777777776 5566777777777766666655554444332 23443332 22211 223344
Q ss_pred HHHHHHHHHHHHhhhhhHHHHH
Q 044788 313 ACLSIIGLYEAQLSNCAYQILG 334 (483)
Q Consensus 313 ~~~~~~~~~~~~~~~~sR~l~~ 334 (483)
.+++..++.....++++--+..
T Consensus 253 ~~l~~~~~n~~N~ys~~l~l~~ 274 (386)
T TIGR02358 253 ILLSTVTTTFMDIYSAAISTGN 274 (386)
T ss_pred HHHhHHHHHHHHHHHHHHHHHH
Confidence 4555555544445554433333
No 80
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=98.50 E-value=2.8e-05 Score=77.95 Aligned_cols=289 Identities=15% Similarity=0.076 Sum_probs=138.4
Q ss_pred cccccchhHHHhhhhhhcc--cccCchhhHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCChHHHhHHHHhCC
Q 044788 40 SKKLSLLPLIFLIYFEVAG--GPYGEEPAVGAAGPLFAILGFLIFPFIWSIPEALVTAELATTFPGNGGYVIWAHHAFGP 117 (483)
Q Consensus 40 ~r~l~~~~~~~~~i~~~iG--g~~~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~l~~~el~~~~p~~Gg~y~~~~~~~g~ 117 (483)
.|+++++......+++.+| ..++.++..+..|.....+ .+...+. .....+.++.--++. +.-..++|.++-+|+
T Consensus 5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~~G~~~~~~-~~~~~~~-~~~~~~~~~~~~r~~-~~~T~~e~~~~Ryg~ 81 (406)
T PF00474_consen 5 GRSLGWWVVAFSLVATWISAWTFIGFPGFAYSYGISGLWY-AIGYAIG-FLLFALFFAPRLRRS-GAVTIPEYLEKRYGS 81 (406)
T ss_dssp -S---HHHHHHHHHHHHSSHHHHTHHHHHHHHT-GGGGHH-HHHHHHH-HHHHHHHTHHHHHHT-T--SHHHHHHHHT-H
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcceeee-ccccchh-HHHHHHHHHHhhccc-chhhhhhhhhhhcCC
Confidence 5788998888888887777 3467777777766533221 2222222 222333334433333 334788999999998
Q ss_pred hh--HHHHHHHHHHHhhhhHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHH
Q 044788 118 FW--GSLMGSWKFLSGVINLASYPILCIDYLKLVFPIFASGFSHYLAIFVVTLVLSFLNYTGLAIVGYTAVTLGVVSLIP 195 (483)
Q Consensus 118 ~~--g~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~ 195 (483)
+. ..+.+....+..+...+....+.+..++..++. + ... .+.+...+......+-|.|...+...+-.++.++.
T Consensus 82 ~~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~gi-~--~~~-~~~i~~~i~~iYt~~GGl~av~~td~iQ~~i~~~~ 157 (406)
T PF00474_consen 82 KALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFGI-P--YNT-AILIVGVIVIIYTFFGGLRAVAWTDFIQGVIMIIG 157 (406)
T ss_dssp HH-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-----HHH-HHHHHHHHHHHTTCTT------SHHHHHHHHHHHH
T ss_pred chhhhhhcccccchhhhhhhhccccccccchhhccch-h--hhH-HHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHH
Confidence 87 666666566666677778888888888877752 1 111 11112222233344457776665544444443333
Q ss_pred HHHHHHHHhccc-------------ccccccccCCCCC-C-CchHHHHHHHHHHhcchHhhhhhhhhc---cCcCcchHH
Q 044788 196 FLFLTVIAIPKI-------------DSIRWISLGQNGV-P-KNWRLFFNTLFWNLNFWDNASTLAGEV---EQPQRTFPK 257 (483)
Q Consensus 196 ~~~~~i~~~~~~-------------~~~~~~~~~~~~~-~-~~~~~~~~~~~~a~~G~e~~~~~~~E~---k~p~r~~p~ 257 (483)
.++..+..+.+. +++..+..++.+. . .+........+....|....++..... ||+ |+.+|
T Consensus 158 ~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~qR~~aak~~-~~ar~ 236 (406)
T PF00474_consen 158 AIVVLIFVLSAVGGFGGLFQNLSAAHPNFLDLFNPGGFSMFSSPLFFLSFWIALMLGTFGAPHFWQRFLAAKSP-KTARK 236 (406)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHH-GGGG-SS--SS-----SSGGGGS-TTHHHHSTHHH-HHHHHHHSSSHH-HHHHH
T ss_pred HHHhhhccchhcCCchhhHHHHhhcCcccccccCCCCcccccchhhhHHHHHHHHhhhccchHHHHHHHhcCCH-HHHHH
Confidence 333222222111 1110000111100 0 001111101011122333334443333 544 77888
Q ss_pred HHHHHHHHHHHHHHHHH------HHHhhccCC---CCCCccccHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhh
Q 044788 258 ALFSAGLLTCVAYLLPL------LAATGAIPL---DQQNWVDGYFAEVAEIIAGKWLKICIEIGACLSIIGLYEAQLSNC 328 (483)
Q Consensus 258 a~~~~~~~~~~~y~l~~------~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (483)
+...+.....+++.... .......|+ +...+.+..+..+.++..+++...++..+++.+..++..+.+.+.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~gl~~~~~~aA~~ST~~s~l~a~ 316 (406)
T PF00474_consen 237 GMLIAIIFLIIFYFLTIFIGLIAIALFGLYPDAAGPSLGDPDLAFPYLAAQYLPPGLAGLFLAGILAAIMSTADSLLLAI 316 (406)
T ss_dssp HHHHHHGGGTTHHHHHHHHHHHH-HHHHHH-TT--S-SSSGGGHHHHHHT-TS-TTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHhhhheeeehHHhhhhhhhhcccccccccccccccCCcccchhhhhhhccchhHHHHHHHHHHhhhHHHHHHHhhh
Confidence 88777654444443311 112222221 223345567888888888999998888888888888888888876
Q ss_pred hHHHHHhhhcC
Q 044788 329 AYQILGMTNLG 339 (483)
Q Consensus 329 sR~l~~~a~dg 339 (483)
+-. ++||=
T Consensus 317 ss~---~~~Di 324 (406)
T PF00474_consen 317 SSI---FSRDI 324 (406)
T ss_dssp HHH---HHHHC
T ss_pred hhh---hhHHh
Confidence 643 56774
No 81
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=98.48 E-value=0.0024 Score=66.38 Aligned_cols=283 Identities=11% Similarity=0.024 Sum_probs=138.4
Q ss_pred ccccccchhHHHhhhhhhcc--cccCchhhHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCChHHHhHHHHhC
Q 044788 39 TSKKLSLLPLIFLIYFEVAG--GPYGEEPAVGAAGPLFAILGFLIFPFIWSIPEALVTAELATTFPGNGGYVIWAHHAFG 116 (483)
Q Consensus 39 ~~r~l~~~~~~~~~i~~~iG--g~~~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~l~~~el~~~~p~~Gg~y~~~~~~~g 116 (483)
-.|+++++.......++..+ ...+.++..+..|..+..+. ++..+-.....+.+++--++.-. =...+|.++-++
T Consensus 65 aGr~~~~~~~g~si~at~~SaasflG~~G~~y~~G~~~~~~~--~g~~~~~~i~~~~~a~~lrr~g~-~T~~d~l~~Rf~ 141 (549)
T TIGR02711 65 AGGNITGFQNGLAIAGDYMSAASFLGISALVYTSGYDGLIYS--LGFLVGWPIILFLIAERLRNLGR-YTFADVASYRLK 141 (549)
T ss_pred eCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHHHHHHcCC-ccHHHHHHHHcC
Confidence 46888888776666666655 34577777777665333222 11111011223444554444432 356677777786
Q ss_pred -ChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHH
Q 044788 117 -PFWGSLMGSWKFLSGVINLASYPILCIDYLKLVFPIFASGFSHYLAIFVVTLVLSFLNYTGLAIVGYTAVTLGVVSLIP 195 (483)
Q Consensus 117 -~~~g~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~ 195 (483)
+....+.+....+..+........+.+..++.+++. + .+.. +.+...+......+-|+|...+.+.+=.++.++.
T Consensus 142 s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~gi-~-~~~~--iii~~~i~~~Yt~~GGm~av~~td~iQ~~im~~g 217 (549)
T TIGR02711 142 QRPIRILSACGSLVVVALYLIAQMVGAGKLIELLFGL-N-YHVA--VVLVGILMVMYVLFGGMLATTWVQIIKAVLLLFG 217 (549)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-C-HHHH--HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 556777777666666666666777777777777652 1 1111 2222223334445568877777665555544443
Q ss_pred HHHHHHHHhcccc--------------cccccccCCCCCCCchHHHHHHHHHHhcchHhhhhhhhh---ccCcCcchHHH
Q 044788 196 FLFLTVIAIPKID--------------SIRWISLGQNGVPKNWRLFFNTLFWNLNFWDNASTLAGE---VEQPQRTFPKA 258 (483)
Q Consensus 196 ~~~~~i~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~~~E---~k~p~r~~p~a 258 (483)
.++..+....+.+ +.......+.+...+....+...+....|.-..++.... .||+ |+..|+
T Consensus 218 ~i~~~~~~~~~~ggg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~P~~~~R~~taks~-k~ar~s 296 (549)
T TIGR02711 218 ATFMAFMVMKSVGFSFNTLFKEAMAVHPKGVAIMSPGGLVSDPISALSLGLGLMFGTAGLPHILMRFFTVSDA-KEARKS 296 (549)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhhCcccccccCCCccccchHHHHHHHHHHHHHhcCCchhheeeeecCCH-HHHHHH
Confidence 3332222211111 100000011100011111222111112233223444332 3554 888999
Q ss_pred HHHHHHHHHHHHHHHHHHHh---hccC-CCCC--------CccccHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhh
Q 044788 259 LFSAGLLTCVAYLLPLLAAT---GAIP-LDQQ--------NWVDGYFAEVAEIIAGKWLKICIEIGACLSIIGLYEAQLS 326 (483)
Q Consensus 259 ~~~~~~~~~~~y~l~~~~~~---~~~~-~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (483)
..++......+|+...+... ...+ ..+. ...+.....+.....++++..++..+.+.+..++..+.+.
T Consensus 297 ~~~~~~~~~~~~~~~~~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~glv~A~~~AA~mST~~s~l~ 376 (549)
T TIGR02711 297 VFYATGFMGYFYILTFIIGFGAILLVSANPEFKDATGALIGGNNMAAVHLANAVGGNLFLGFISAVAFATILAVVAGLTL 376 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccccCCCcchHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99887777666655443321 1122 1111 0112234445555666666666666666666666666655
Q ss_pred hhh
Q 044788 327 NCA 329 (483)
Q Consensus 327 ~~s 329 (483)
+.+
T Consensus 377 a~s 379 (549)
T TIGR02711 377 AGA 379 (549)
T ss_pred HHH
Confidence 554
No 82
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=98.43 E-value=0.0018 Score=63.38 Aligned_cols=276 Identities=16% Similarity=0.114 Sum_probs=143.8
Q ss_pred chhHHHhhhhhhcc--cccCchhhHhhhChHHHHHHHHHHHHHHHHHHHHHHHHh--hccCCCC-ChHHHhHHHHhCChh
Q 044788 45 LLPLIFLIYFEVAG--GPYGEEPAVGAAGPLFAILGFLIFPFIWSIPEALVTAEL--ATTFPGN-GGYVIWAHHAFGPFW 119 (483)
Q Consensus 45 ~~~~~~~~i~~~iG--g~~~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~l~~~el--~~~~p~~-Gg~y~~~~~~~g~~~ 119 (483)
-...+.-++|+.+| -+.-.|...++.|..+.++-+++..++..++.. ..|+ +++..++ -+.|. +..+++.
T Consensus 11 rlGFILAa~GsAVGLGNiWrFPy~~~~nGGgAFll~yli~~l~~GiPll--i~Ef~iGr~~~~~~~~a~~---~l~~~~~ 85 (439)
T COG0733 11 RLGFILAAAGSAVGLGNIWRFPYMAGENGGGAFLLPYLIFLLLVGIPLL--LAEFAIGRRGRKNAVGAFR---KLAPKKK 85 (439)
T ss_pred HHHHHHHHHHHHhcccccccCCeEeeecCcchHHHHHHHHHHHHhHHHH--HHHHHhhhhcCCChhHHHH---HhccCcc
Confidence 34556667777777 456778887775554666667666654455444 4664 4444332 22222 2222344
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcc----c--------------c-ccchHHHHHHHHHHHHHHHHHhhchhH
Q 044788 120 GSLMGSWKFLSGVINLASYPILCIDYLKLVFP----I--------------F-ASGFSHYLAIFVVTLVLSFLNYTGLAI 180 (483)
Q Consensus 120 g~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~----~--------------~-~~~~~~~~~~~~~~~~~~~i~~~g~~~ 180 (483)
.-..||.-.+......+.++...+..+.+... . . .+++......+++..+..++..+|++.
T Consensus 86 ~~~~G~~gv~~~~~i~sfYsvI~GWil~Y~~~s~tg~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~lt~~iv~~GV~~ 165 (439)
T COG0733 86 WEWIGWFGVLGGFLILSFYSVIGGWILSYLVKSLTGALPDTGEQFAQLFGQTISNPGLAVIFHLLFLVLTALIVSRGVKK 165 (439)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhHHh
Confidence 45556655555555555555555544433321 1 0 123333344445555556666778776
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhccccc-c----cccccCCCC-CCCchHHHHHHHHHHhc-chHhhhhhhhhccCcC
Q 044788 181 -VGYTAVTLGVVSLIPFLFLTVIAIPKIDS-I----RWISLGQNG-VPKNWRLFFNTLFWNLN-FWDNASTLAGEVEQPQ 252 (483)
Q Consensus 181 -~~~~~~~~~~~~i~~~~~~~i~~~~~~~~-~----~~~~~~~~~-~~~~~~~~~~~~~~a~~-G~e~~~~~~~E~k~p~ 252 (483)
.-|.+.++...-.+.+++..+..+...+. + .+.|+...- .+..|..++...+|+.+ |+....+++.-.++ +
T Consensus 166 GIEk~~kimMP~Lfvl~i~Lvi~~~tLpGA~~G~~f~l~PD~s~l~~~~v~~~AlGQ~FFsLSlG~g~mitYsSYL~k-~ 244 (439)
T COG0733 166 GIEKANKIMMPLLFVLFIILVIRAVTLPGAMEGLKFLFKPDFSKLTDPKVWLAALGQAFFSLSLGFGIMITYSSYLSK-K 244 (439)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHhcCCHHHcCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCc-c
Confidence 44677666666655555555544432111 0 011211110 13466667777777765 88888888888876 5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHH---HhhccCCCCCCccc---cHHHHHHHHHc-chHHHHHHHHHHHHHHHHHHHHHh
Q 044788 253 RTFPKALFSAGLLTCVAYLLPLLA---ATGAIPLDQQNWVD---GYFAEVAEIIA-GKWLKICIEIGACLSIIGLYEAQL 325 (483)
Q Consensus 253 r~~p~a~~~~~~~~~~~y~l~~~~---~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 325 (483)
+|+++.-......=...-++..+. .....+.+..+... ..+..++++.. |.....++..+..++.++|..+.+
T Consensus 245 ~~l~~sa~~v~~~n~~~s~lAGl~Ifpa~f~~g~~~~~GpgL~Fi~LP~if~~mp~G~~~~~lFFl~l~fAalTS~iSml 324 (439)
T COG0733 245 SDLVSSALSIVLLNTLISLLAGLVIFPALFSFGADASQGPGLVFIVLPAVFNQMPLGTLFGILFFLLLLFAALTSAISML 324 (439)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeeehhHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788877665544333332222222 11222222111111 23566666664 445555555666666666666555
Q ss_pred h
Q 044788 326 S 326 (483)
Q Consensus 326 ~ 326 (483)
-
T Consensus 325 E 325 (439)
T COG0733 325 E 325 (439)
T ss_pred H
Confidence 3
No 83
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=98.37 E-value=0.0018 Score=67.54 Aligned_cols=147 Identities=10% Similarity=-0.053 Sum_probs=87.8
Q ss_pred cccccccchhHHHhhhhhhcc--cccCchhhHhhhChHHH--HHHHHHHHHHHHHHHHHHHHHhhccCCCCChHHHhHHH
Q 044788 38 VTSKKLSLLPLIFLIYFEVAG--GPYGEEPAVGAAGPLFA--ILGFLIFPFIWSIPEALVTAELATTFPGNGGYVIWAHH 113 (483)
Q Consensus 38 ~~~r~l~~~~~~~~~i~~~iG--g~~~~~~~~~~~G~~~~--i~~~~~~~~~~~~~~~l~~~el~~~~p~~Gg~y~~~~~ 113 (483)
.-.|+++++.......++.++ ...+.++..+..|.... .+++.++ ....++.+++.-++.... ..++|.++
T Consensus 29 laGr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~~G~~~~~~~~g~~~~----~~~~~~~~~p~~rr~~~~-T~~e~l~~ 103 (552)
T TIGR03648 29 VAGRGVPPVANGMATAADWMSAASFISMAGLIAFLGYDGLAYLMGWTGG----YVLLALLLAPYLRKFGKY-TVPDFIGD 103 (552)
T ss_pred eeCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhChHHHHHHHHHHHH----HHHHHHHHHHHHHHCCCc-cHHHHHHH
Confidence 456899999988888877766 34567776666665322 2223222 222345566666666543 89999999
Q ss_pred HhCCh-hHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHH
Q 044788 114 AFGPF-WGSLMGSWKFLSGVINLASYPILCIDYLKLVFPIFASGFSHYLAIFVVTLVLSFLNYTGLAIVGYTAVTLGVVS 192 (483)
Q Consensus 114 ~~g~~-~g~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~ 192 (483)
-||++ ...+.+....+..+...+......+..++.+++. + .+...++ ...+.......-|+|...+...+=.++.
T Consensus 104 Rf~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~gi-~-~~~~iii--~~~i~~iYt~~GG~~aV~~TD~iQ~iim 179 (552)
T TIGR03648 104 RYYSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFLEV-D-FETGVFI--GMAIVFFYAVLGGMKGVTWTQVAQYIVL 179 (552)
T ss_pred HhCCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-C-HHHHHHH--HHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 99854 6777777777666666677777777777766552 1 1112222 2223334444467777766544433333
Q ss_pred H
Q 044788 193 L 193 (483)
Q Consensus 193 i 193 (483)
+
T Consensus 180 ~ 180 (552)
T TIGR03648 180 I 180 (552)
T ss_pred H
Confidence 3
No 84
>PRK00701 manganese transport protein MntH; Reviewed
Probab=98.35 E-value=0.0044 Score=62.25 Aligned_cols=64 Identities=14% Similarity=-0.056 Sum_probs=43.0
Q ss_pred HHHHHHHHHhhccCCCC-C-hHHHhHHHHhCChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcc
Q 044788 88 IPEALVTAELATTFPGN-G-GYVIWAHHAFGPFWGSLMGSWKFLSGVINLASYPILCIDYLKLVFP 151 (483)
Q Consensus 88 ~~~~l~~~el~~~~p~~-G-g~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~ 151 (483)
.+....+.|++.|.-.. | |.-+-.++.+|+.+++.......+...........+.+.-++.+++
T Consensus 75 ~~~~~~~Q~~~~RlgivTG~~l~~~ir~~~~~~~~~~~~~~~~l~~~~~~~~e~~G~a~al~ll~g 140 (439)
T PRK00701 75 NLMAMLLQSLSAKLGIATGRDLAQACRDRYPRPVVWFLWIQAELAIMATDLAEVIGAAIALKLLFG 140 (439)
T ss_pred HHHHHHHHHHHhHhhhhcCCCHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33467778888877653 4 7888899999998888776665566665555555555555554443
No 85
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members.; GO: 0015079 potassium ion transmembrane transporter activity, 0071805 potassium ion transmembrane transport, 0016020 membrane
Probab=98.32 E-value=0.0011 Score=66.73 Aligned_cols=294 Identities=15% Similarity=0.104 Sum_probs=153.4
Q ss_pred HHHHHHhhccCCC--CChHHHhHHHHh-----CChhHH-------HHHHHHHHHhhhhHHHHHHHHHHHHHHhccccccc
Q 044788 91 ALVTAELATTFPG--NGGYVIWAHHAF-----GPFWGS-------LMGSWKFLSGVINLASYPILCIDYLKLVFPIFASG 156 (483)
Q Consensus 91 ~l~~~el~~~~p~--~Gg~y~~~~~~~-----g~~~g~-------~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 156 (483)
..-|.-+.-+.-+ +||.....+..- +++..+ +-+-..+-+.+.+.+....+..+-+....|...+
T Consensus 52 ~iKYv~ivlradn~GEGGi~aL~sL~~~~~~~~~~~~~~l~~l~l~G~al~~gDgviTPAISVlSAvEGl~v~~p~~~~- 130 (534)
T PF02705_consen 52 TIKYVLIVLRADNNGEGGIFALYSLIRRFLKSSKRRRWLLLILGLLGAALFYGDGVITPAISVLSAVEGLEVATPSLEP- 130 (534)
T ss_pred HHheEEEEEEeCCCCChhHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhhcceeecchHHHHHHhhhhhccCCCCcc-
Confidence 4444434333332 578776554443 233222 2222334457778888888888888877776552
Q ss_pred hHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCC-----CCCchHH--HHH
Q 044788 157 FSHYLAIFVVTLVLSFLNYTGLAIVGYTAVTLGVVSLIPFLFLTVIAIPKIDSIRWISLGQNG-----VPKNWRL--FFN 229 (483)
Q Consensus 157 ~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~-----~~~~~~~--~~~ 229 (483)
....+++++++.+..+.-+|....++.-.-...+=++.+..+.+..+.+. ++-+...++.. ...++.+ .+.
T Consensus 131 -~Vv~it~~ILv~LF~iQ~~GT~~ig~~FgPim~~WF~~l~~~G~~~I~~~-p~Vl~A~nP~yai~f~~~~~~~~~~~LG 208 (534)
T PF02705_consen 131 -YVVPITIAILVGLFAIQRFGTAKIGKLFGPIMLLWFLTLGVLGLYNIIQH-PEVLKALNPYYAIRFFIRNGWIGFFVLG 208 (534)
T ss_pred -eehhHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHhhC-HHHHHHhCHHHHHHHHHHcCCchhhhcc
Confidence 23556667777788888889888877754433333344444444443332 32222222111 0112222 234
Q ss_pred HHHHHhcchHhhhhhhhhccCcCcchHHHHHHHHHHH-HHHHHHHHHHHhhccCCCCCCccccHHHHHHHHHcchHHHHH
Q 044788 230 TLFWNLNFWDNASTLAGEVEQPQRTFPKALFSAGLLT-CVAYLLPLLAATGAIPLDQQNWVDGYFAEVAEIIAGKWLKIC 308 (483)
Q Consensus 230 ~~~~a~~G~e~~~~~~~E~k~p~r~~p~a~~~~~~~~-~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (483)
+++.+.+|-|+.-.--+- -.+|.+.++-..-+.-+ .+-|+-.. +....-|++ ..+|+.... +++..+.
T Consensus 209 ~V~L~~TGaEALyADmGH--fg~~~Ir~aw~~~V~PaL~LnY~GQg-A~ll~~p~~----~~npFf~~~----P~~~~~p 277 (534)
T PF02705_consen 209 AVFLCVTGAEALYADMGH--FGRKPIRIAWFFLVFPALLLNYFGQG-ALLLSHPEA----VSNPFFLLI----PEWLLWP 277 (534)
T ss_pred hHHHHHhhHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHccHH-HHHHcCcch----hhhHHHHHh----HHHHHHH
Confidence 578899999975442222 23455655554422222 33344333 333332322 345555443 4455555
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCCCch-hhhccCCCC--C--CCHHHH-HHHHHHHHHHHhcCHHHHHHHHH
Q 044788 309 IEIGACLSIIGLYEAQLSNCAYQILGMTNLGLLPK-VFGSRSSWF--H--TPWVGI-FISTLIALTVSYMDFTNIISCVN 382 (483)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~-~~~~~~~~~--~--~P~~ai-~~~~i~~~~~~~~~~~~l~~~~~ 382 (483)
+.+...++..-...+.+.++--+..+.-+-|.+|+ +..+.+++. + .|..-- ++..++.+++.+-+-+.+.++.+
T Consensus 278 ~~ilAtlAtIIASQA~Isg~FSl~~Qai~Lg~~Pr~~I~hTS~~~~GQIYIP~vNw~L~i~~i~vvl~F~~S~~la~AYG 357 (534)
T PF02705_consen 278 MVILATLATIIASQAVISGAFSLTRQAIQLGYFPRLKIVHTSEKEEGQIYIPEVNWLLMIGVIAVVLGFRSSSNLAAAYG 357 (534)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEECCcccCCcEechHHHHHHHHHHHhhheEECChHHHHHHHH
Confidence 55554444444444445455555566677889995 344444433 2 343333 32333333333567788888888
Q ss_pred HHHHHHHHHHHHHHHH
Q 044788 383 FLYSLGMLLEFASFLW 398 (483)
Q Consensus 383 ~~~~~~~~~~~~~~~~ 398 (483)
+.......++.+.+..
T Consensus 358 iAVt~tM~iTT~L~~~ 373 (534)
T PF02705_consen 358 IAVTGTMLITTILLFL 373 (534)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8877777776644443
No 86
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=98.22 E-value=0.0024 Score=62.73 Aligned_cols=252 Identities=15% Similarity=0.094 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCC--CChHHHhHHHHhCChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcc
Q 044788 74 FAILGFLIFPFIWSIPEALVTAELATTFPG--NGGYVIWAHHAFGPFWGSLMGSWKFLSGVINLASYPILCIDYLKLVFP 151 (483)
Q Consensus 74 ~~i~~~~~~~~~~~~~~~l~~~el~~~~p~--~Gg~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~ 151 (483)
..+|..++..+ ..+.+.|++.|+-. .-+..+-.++.+||.+++.......+...........+.+.-++.+++
T Consensus 14 ~Llw~lll~~~-----~~~~~q~~~~R~~~~Tg~~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a~al~ll~g 88 (358)
T PF01566_consen 14 SLLWVLLLSNL-----LKYVFQEMAARLGIVTGKGLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIAIALNLLFG 88 (358)
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHhhhcCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 34444444433 47777777777664 345666778888999988888887777777777777666666665552
Q ss_pred ccccchHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHH-hccccccccc-ccCCCC-CC-CchHHH
Q 044788 152 IFASGFSHYLAIFVVTLVLSFLNYTGLAIVGYTAVTLGVVSLIPFLFLTVIA-IPKIDSIRWI-SLGQNG-VP-KNWRLF 227 (483)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~-~~~~~~~~~~-~~~~~~-~~-~~~~~~ 227 (483)
.+.....++..+....+.+...+...+++..+.++..+..+.+.... ..+.+..... ....+. +. .++...
T Consensus 89 -----~~~~~~~~~~~~~~~~ll~~~~~~y~~~E~~~~~lv~~m~l~f~~~~~~~~p~~~~~~~g~~~P~~p~~~~~~~~ 163 (358)
T PF01566_consen 89 -----IPLWIWVLLVAVIAILLLWLSSGGYRRLERILKVLVAVMVLAFLIAAFIVHPDWGEVARGLVVPSIPGPGSLLFA 163 (358)
T ss_pred -----CCcHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHhhhccCCCCcchhHHHHH
Confidence 12222232222332233222234455566665555554433333222 2222222111 111011 11 111111
Q ss_pred HHHHHHHhcchHhh--hhhh-hhccCcC---cc--hHHH---HHHHHHHHHHHHHHHHHHHhhcc-CCCCCCccccHHHH
Q 044788 228 FNTLFWNLNFWDNA--STLA-GEVEQPQ---RT--FPKA---LFSAGLLTCVAYLLPLLAATGAI-PLDQQNWVDGYFAE 295 (483)
Q Consensus 228 ~~~~~~a~~G~e~~--~~~~-~E~k~p~---r~--~p~a---~~~~~~~~~~~y~l~~~~~~~~~-~~~~~~~~~~~~~~ 295 (483)
....-.....++.. ++.. |+-.+++ ++ .+.. ...+.++..++-........... +.+....+.....+
T Consensus 164 valiGttv~p~~lf~~s~~~~~k~~~~~~~~~~~~l~~~~~D~~~g~~~~~li~~ai~i~~A~~l~~~~~~~~~~~~~~~ 243 (358)
T PF01566_consen 164 VALIGTTVMPHNLFLHSSLVQEKGWTGNRSRPDEALKYARFDTIIGMIVSFLINVAILIVAAAVLYPGGSEVETAAQAAQ 243 (358)
T ss_pred HHHHHHhhhHHHHHHHHHHhhhcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHH
Confidence 11111111111111 1111 1111110 11 2111 12222222222111111111111 22221122334556
Q ss_pred HHHHHcc-hHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHh
Q 044788 296 VAEIIAG-KWLKICIEIGACLSIIGLYEAQLSNCAYQILGM 335 (483)
Q Consensus 296 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ 335 (483)
..+...| ++...++.++.+.+.+++..+...+.++.+.+.
T Consensus 244 ~L~~~~G~~~a~~lF~igl~~a~fss~i~~~~~~~~~~~~~ 284 (358)
T PF01566_consen 244 ALEPLLGSPWARYLFAIGLFAAGFSSSITATLAGAYVLADF 284 (358)
T ss_pred HHHHhcCchHHHHhHHHHHHHHHHhhHHHhccccceehHhh
Confidence 6667777 799999999999999999998888877765554
No 87
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=98.20 E-value=0.0081 Score=59.30 Aligned_cols=110 Identities=14% Similarity=0.089 Sum_probs=60.0
Q ss_pred HHHHHHHHHHhhccCCC-C-ChHHHhHHHHhCChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhccccccchHHHHHHH
Q 044788 87 SIPEALVTAELATTFPG-N-GGYVIWAHHAFGPFWGSLMGSWKFLSGVINLASYPILCIDYLKLVFPIFASGFSHYLAIF 164 (483)
Q Consensus 87 ~~~~~l~~~el~~~~p~-~-Gg~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 164 (483)
..+..+..-|++.+.-. + -|.-.-.++.++|++++.......+....+...+..+.+-.++.++.. +.....+
T Consensus 57 s~l~~~~~Q~~~arLgivTG~~laq~ir~~y~~~~~~~~~~~~~i~~~at~iae~~G~aial~ll~~i-----p~~~g~i 131 (416)
T COG1914 57 SNLMAYILQELSARLGIVTGKGLAEAIRERYLPGLGILLWILAEIAGIATDIAEVAGIAIALNLLFGI-----PLIIGAV 131 (416)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----hHHHHHH
Confidence 33345666666666543 2 235566777788988888777777777777777777777667666542 2222222
Q ss_pred HHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 044788 165 VVTLVLSFLNYTGLAIVGYTAVTLGVVSLIPFLFLTVIA 203 (483)
Q Consensus 165 ~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~ 203 (483)
+......++...+ -..+++.+...+.++..+.+....
T Consensus 132 Itav~~~iil~~~--~~r~~E~~v~~l~~~~~i~~~~~~ 168 (416)
T COG1914 132 ITAVDVLIILLLK--GYRLLERVVLILGLVLVILFVYVA 168 (416)
T ss_pred HHHHHHHHHHHhc--chHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222222222 344555555555554444444433
No 88
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=98.16 E-value=2.9e-05 Score=78.70 Aligned_cols=231 Identities=15% Similarity=0.113 Sum_probs=110.1
Q ss_pred ccccccchhHHHhhhhhhcc-cccCchhhHhh--hChHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCChHHHhHHHHh
Q 044788 39 TSKKLSLLPLIFLIYFEVAG-GPYGEEPAVGA--AGPLFAILGFLIFPFIWSIPEALVTAELATTFPGNGGYVIWAHHAF 115 (483)
Q Consensus 39 ~~r~l~~~~~~~~~i~~~iG-g~~~~~~~~~~--~G~~~~i~~~~~~~~~~~~~~~l~~~el~~~~p~~Gg~y~~~~~~~ 115 (483)
.+|+-++++.+.+=++..+. ..+.++..... -+....+++.+++.++..++.++ .+.++.++-. ......|..|
T Consensus 5 ~~R~~~~~~~~~iW~~~~~~~~~~~~G~~~~~~gL~~~~ailai~~G~~l~~i~~~~-~~~~G~r~Gl--~~~v~sR~~F 81 (440)
T PF02133_consen 5 SERTWSPWSLFWIWFGANISIATFVTGALGVALGLSFWQAILAILIGNLLGAILVAL-MGIIGPRTGL--PTMVLSRASF 81 (440)
T ss_dssp GG--B-HHHHHHHHCHHH-SCHHH-HHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHH-HTHHHHCC-----HHHHTTTTS
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHH-hcccccccCC--Cchhcchhcc
Confidence 45666777777776665444 23333333212 23334555566655542233333 3444444432 2555667789
Q ss_pred CChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcccccc------------chHHHHHHHHHHHHHHHHHhhchhHHHH
Q 044788 116 GPFWGSLMGSWKFLSGVINLASYPILCIDYLKLVFPIFAS------------GFSHYLAIFVVTLVLSFLNYTGLAIVGY 183 (483)
Q Consensus 116 g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------------~~~~~~~~~~~~~~~~~i~~~g~~~~~~ 183 (483)
|.+.+.+......+..+...+......++.+....+...+ ....++..++..++.....+.|.|...+
T Consensus 82 G~~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~l~~ 161 (440)
T PF02133_consen 82 GYRGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGIIFGSFLWIGNAIIGIALPLWVCFFIFWLIQTLFAIYGMKALRR 161 (440)
T ss_dssp -TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----HH-----------HHHHHHHHHHHHHHCTHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhhhhhcchhhHHHHHHHHHHHHHHHHhcCHHHHHh
Confidence 9999999998888888888888888888888777554311 1122233333334455566788888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCCCC-chHHHHHHHHHHh-cchHhhhhhhhhccCcCcchHHHHHH
Q 044788 184 TAVTLGVVSLIPFLFLTVIAIPKIDSIRWISLGQNGVPK-NWRLFFNTLFWNL-NFWDNASTLAGEVEQPQRTFPKALFS 261 (483)
Q Consensus 184 ~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~-~G~e~~~~~~~E~k~p~r~~p~a~~~ 261 (483)
++.+...+.....+........+.+.+..........+. .+...+....-.+ ...-..+.++...|++ |+..|+...
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~DysRy~~~~-~~~~~~~~~ 240 (440)
T PF02133_consen 162 LAVIAAPILLVVFIGMLIWALSKAGGGPLLSAPASPSPSGSFLAAIALVIGSWISWAPNASDYSRYAKSD-TSAWWGFWL 240 (440)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHHCT-HHHCCS--S----S-HHHHHHHHHCCCHHHHCCCHHHHTTC--H-HHHHHHHHH
T ss_pred HHhhhhHHHHhhhhheeEEEeecCCcchhhhCcccchhHHHHHHHHHHHHhhhhhhhhccccHHhhCCCC-CCcEEEEee
Confidence 887766655544444444433333322111111110011 1222222211111 1112233567777765 444566666
Q ss_pred HHHHHHHHHHHH
Q 044788 262 AGLLTCVAYLLP 273 (483)
Q Consensus 262 ~~~~~~~~y~l~ 273 (483)
+.........+.
T Consensus 241 ~~~~~~~~~~~~ 252 (440)
T PF02133_consen 241 GFPGGFIPFVLV 252 (440)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhhhHHHHHHHH
Confidence 555444444333
No 89
>PLN00150 potassium ion transporter family protein; Provisional
Probab=98.12 E-value=0.00064 Score=70.81 Aligned_cols=250 Identities=13% Similarity=0.075 Sum_probs=130.6
Q ss_pred HhhhhHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 044788 130 SGVINLASYPILCIDYLKLVFPIFASGFSHYLAIFVVTLVLSFLNYTGLAIVGYTAVTLGVVSLIPFLFLTVIAIPKIDS 209 (483)
Q Consensus 130 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~ 209 (483)
+.+++.+....+..+-+....|.+..++ ...+++++++.++.+.-+|....++...-...+=++.+..+++..+.+.++
T Consensus 186 DgviTPAISVLSAVeGL~v~~p~l~~~~-Vv~is~~ILv~LF~iQ~~GT~kVg~~FgPIm~~Wf~~i~~iGiyni~~~~p 264 (779)
T PLN00150 186 DGILTPSISVLSAVVGIKAASSGLDTNL-VTIISCVILVILFSLQRFGTHKVSFLFAPIFLCWFFSLALIGCYNIIKWDK 264 (779)
T ss_pred ccccccchhhhhhhccccccCCCCCCCe-ehhhHHHHHHHHHHHHhccchhhhhhhccHHHHHHHHHHHHHHHHHHhcCH
Confidence 4566667777777777776666654332 345667777778888888988887766544444445555555655555555
Q ss_pred ccccccCCCC--------CCCchHHHHHHHHHHhcchHhhhh-hhhhccCcCcchHHHHHHHHH-HHHHHHHHHHHHHhh
Q 044788 210 IRWISLGQNG--------VPKNWRLFFNTLFWNLNFWDNAST-LAGEVEQPQRTFPKALFSAGL-LTCVAYLLPLLAATG 279 (483)
Q Consensus 210 ~~~~~~~~~~--------~~~~~~~~~~~~~~a~~G~e~~~~-~~~E~k~p~r~~p~a~~~~~~-~~~~~y~l~~~~~~~ 279 (483)
.-+...++.. ...+| -.+.+++.+.+|-|+.-. ++.-- +|.+.++-..-+. ...+-|+-....+.
T Consensus 265 ~Vl~AlnP~y~~~ff~~~~~~g~-~~LG~V~L~iTGaEALyADlGHFg---~~~Iriaw~~~V~P~LlL~Y~GQaA~ll- 339 (779)
T PLN00150 265 SVFLAFNPLYIVSFFIRNGRQGW-ESLGGIVLCMTGTEAMFADLGHFT---VKSMQIAFTSLVYPCLLLTYLGQAAYLV- 339 (779)
T ss_pred HHHhhcCHHHHHHHHHhCCCceE-EEecceeeeecchhhhhccccCCC---ccceeeeehhhHHHHHHHHHcchHHHHh-
Confidence 5443333211 01111 123456788999997433 33322 3445555443222 33333444433332
Q ss_pred ccCCCCCCccccHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCCCch-hhhccCCCC--CC--
Q 044788 280 AIPLDQQNWVDGYFAEVAEIIAGKWLKICIEIGACLSIIGLYEAQLSNCAYQILGMTNLGLLPK-VFGSRSSWF--HT-- 354 (483)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~-~~~~~~~~~--~~-- 354 (483)
.-| + ...+|+... .++++.+-+.+.+.++..-...+.+.++--+..+.-+-|.+|+ +..+.+++. +.
T Consensus 340 ~~p-~---~~~npFf~~----iP~~~~~P~~vlAtlAtIIASQA~ISg~FSi~~Qai~Lg~fPrvkI~hTS~~~~GQIYI 411 (779)
T PLN00150 340 KHM-E---DVNDPFYRS----LPKPIYWPIFVLATCSAMIASQAMISATFSIVKQAMALGCFPRVKIVHTSNKVHGQVYI 411 (779)
T ss_pred cCc-c---cccCcHHHh----CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCcccCCceee
Confidence 222 1 133444333 4556666555555555444444444444455555667789995 344444433 22
Q ss_pred CHHHHHH-HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Q 044788 355 PWVGIFI-STLIALTVSYMDFTNIISCVNFLYSLGMLLEF 393 (483)
Q Consensus 355 P~~ai~~-~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 393 (483)
|..--++ ..++...+.+-+-+.+.++.++......+++-
T Consensus 412 P~vNw~Lmv~~i~vv~~F~~s~~l~~AYGiAV~~vM~iTT 451 (779)
T PLN00150 412 PEINWILMVLCLVITAGFRDTDEIGNAYGIAVVGVMIITT 451 (779)
T ss_pred HHHHHHHHHHHHhheEEecChHHHHHHhhhheehhhHHHH
Confidence 3322222 22222222245677788877776555555544
No 90
>TIGR00794 kup potassium uptake protein. Proteins of the KUP family include the KUP (TrkD) protein of E. coli, a partially sequenced ORF from Lactococcus lactis, high affinity K+ uptake systems (Hak1) of the yeast Debaryomyces occidentalis as well as the fungus, Neurospora crassa, and several homologues in plants. While the E. coli KUP protein is assumed to be a secondary transporter, and uptake is blocked by protonophores such as CCCP (but not arsenate), the energy coupling mechanism has not been defined. However, the N. crassa protein has been shown to be a K+:H+ symporter, establishing that the KUP family consists of secondary carriers. The plant high affinity (20mM) K+ transporter can complement K+ uptake defects in E. coli.
Probab=98.00 E-value=0.0015 Score=67.60 Aligned_cols=258 Identities=16% Similarity=0.119 Sum_probs=137.5
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 044788 127 KFLSGVINLASYPILCIDYLKLVFPIFASGFSHYLAIFVVTLVLSFLNYTGLAIVGYTAVTLGVVSLIPFLFLTVIAIPK 206 (483)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~ 206 (483)
.+-+.+++.+....+..+-+....|.+..+ ....++++++++++.+.-+|....++...-...+=++.+.++++..+.+
T Consensus 137 ~~gDgviTPAiSVLSAVeGl~v~~p~~~~~-~Vv~it~~ILv~LF~iQ~~GT~kvg~~FgPim~vWF~~l~~~Gi~~I~~ 215 (688)
T TIGR00794 137 VMGDGVLTPAISVLSAVSGLEIVAPSLSDT-WVVPISCIILVLLFLIQRFGTAKVGFTFAPIILVWLLLLAGIGIYNIVK 215 (688)
T ss_pred HhcccccccchhhhhhhccccccCCCCCCC-eehhHHHHHHHHHHHHhccccHHHhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 333567777777777777777777766333 2345666777778888888988887776554444455555555555555
Q ss_pred cccccccccCCCC-----CCCchHH--HHHHHHHHhcchHhhhhhhhhccCcCcchHHHHHHHH-HHHHHHHHHHHHHHh
Q 044788 207 IDSIRWISLGQNG-----VPKNWRL--FFNTLFWNLNFWDNASTLAGEVEQPQRTFPKALFSAG-LLTCVAYLLPLLAAT 278 (483)
Q Consensus 207 ~~~~~~~~~~~~~-----~~~~~~~--~~~~~~~a~~G~e~~~~~~~E~k~p~r~~p~a~~~~~-~~~~~~y~l~~~~~~ 278 (483)
.++.-+...++.. ...++.+ .+.+++.+.+|-|+.-.--+-. .+|.+.++-..-+ ....+.|+-....+.
T Consensus 216 ~~P~Vl~AlnP~ya~~f~~~~~~~~~~~LG~V~L~iTGaEALyADmGHF--g~~~Ir~aw~~~V~P~L~LnY~GQgA~ll 293 (688)
T TIGR00794 216 FNPEVLKALSPYYAVQFFIEYGTVGWVSLGGVVLSITGVEAMFADLGHF--GKLPIQLAWFTFVYPSLILCYIGQAAYLS 293 (688)
T ss_pred cCHHHHhHhCHHHHHHHHHHCCCceeeeccchhheeccHhhhhcccCCC--CcccceeehHHHHHHHHHHHHcchHHHHh
Confidence 4554443333211 0112222 2445778999999743322222 2344555544222 233444544443333
Q ss_pred hccCCCCCCccccHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCCCch-hhhccCCC--CCC-
Q 044788 279 GAIPLDQQNWVDGYFAEVAEIIAGKWLKICIEIGACLSIIGLYEAQLSNCAYQILGMTNLGLLPK-VFGSRSSW--FHT- 354 (483)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~-~~~~~~~~--~~~- 354 (483)
.-| + ...+|+... .+++..+.+.+.+.++..-...+.+.++--+..+.-+-|.+|+ +..+.+++ .+.
T Consensus 294 -~~p-~---~~~NpFf~~----~P~~~~~p~~vlAtlAtIIASQA~IsG~FSl~~Qai~Lg~~Pr~~I~hTS~~~~GQIY 364 (688)
T TIGR00794 294 -KHP-E---AIKNPFFLS----IPDWALWPLFIIATLAAIIASQAVISGVFSITSQAVRLGCFPRVKIIHTSEKYHGQIY 364 (688)
T ss_pred -cCc-c---hhcCcHHHh----CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccCCcee
Confidence 222 2 124555443 4556666555555554444444444444445555667789995 34444443 233
Q ss_pred -CHHHHH-HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH
Q 044788 355 -PWVGIF-ISTLIALTVSYMDFTNIISCVNFLYSLGMLLEFASF 396 (483)
Q Consensus 355 -P~~ai~-~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 396 (483)
|..--+ +..++...+.+-+-+.+.++.++......+++-+-+
T Consensus 365 iP~vNw~Lmv~~i~vvl~F~~S~~la~AYGiaVt~tM~iTT~L~ 408 (688)
T TIGR00794 365 IPFVNWLLMLGVIAVTAGFRDTNNLGAAYGIAVTGTFLVTTCLM 408 (688)
T ss_pred eHHHHHHHHHHHHheeEEecChHHHHHHhhhhhhhhhHHHHHHH
Confidence 332222 222222222355677888888777666666665443
No 91
>PRK10745 trkD potassium transport protein Kup; Provisional
Probab=97.99 E-value=0.0028 Score=64.61 Aligned_cols=296 Identities=16% Similarity=0.103 Sum_probs=150.1
Q ss_pred HHHHHHHhhccCC--CCChHHHhHHHHh---CCh-------hHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhccccccch
Q 044788 90 EALVTAELATTFP--GNGGYVIWAHHAF---GPF-------WGSLMGSWKFLSGVINLASYPILCIDYLKLVFPIFASGF 157 (483)
Q Consensus 90 ~~l~~~el~~~~p--~~Gg~y~~~~~~~---g~~-------~g~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 157 (483)
...-|.-+.-+-- -+||.....+-.- .++ +|.+-+-..+-+.+++.+....+..+-+....|...+ +
T Consensus 64 vtiKYv~ivlrADn~GEGGi~AL~aL~~~~~~~~~~~~l~~lgl~Gaal~~gDgvITPAISVLSAVEGL~v~~p~l~~-~ 142 (622)
T PRK10745 64 VSIKYLTFVMRADNAGEGGILTLMSLAGRNTSARTTSMLVIMGLIGGSFFYGEVVITPAISVMSAIEGLEIVAPQLDT-Y 142 (622)
T ss_pred HHHHhheEEEecCCCCCchHHHHHHHHhhhcccchhHHHHHHHHHHHHHHhhccccchhHHHHHHhhcccccCCCCCC-c
Confidence 3444444443333 3688776544332 122 2333333344457778888888888888877777643 2
Q ss_pred HHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCC-----CCCchHH--HHHH
Q 044788 158 SHYLAIFVVTLVLSFLNYTGLAIVGYTAVTLGVVSLIPFLFLTVIAIPKIDSIRWISLGQNG-----VPKNWRL--FFNT 230 (483)
Q Consensus 158 ~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~-----~~~~~~~--~~~~ 230 (483)
...+++++++.+..+.-+|....++.-.-...+=++.+.+.++..+.+ ++.-+...++.. ...++.+ .+.+
T Consensus 143 -Vvpit~~ILv~LF~iQ~~GT~~vG~~FgPIm~vWF~~i~~~Gi~~I~~-~P~Vl~AlnP~ya~~f~~~~~~~gf~~LG~ 220 (622)
T PRK10745 143 -IVPLSIIVLTLLFMIQKHGTGMVGKLFAPIMLTWFLTLAVLGLRSIIA-NPEVLHALNPMWAVHFFLEYKTVSFFALGA 220 (622)
T ss_pred -cHHHHHHHHHHHHHHhccccHHHhhhhhhHHHHHHHHHHHHHHHHHhc-CHHHHhHhCHHHHHHHHHhCCCceEEEecc
Confidence 456677777788888888988877765444444344444444444433 333333322211 0011111 2334
Q ss_pred HHHHhcchHhhhhhhhhccCcCcchHHHHHHHHH-HHHHHHHHHHHHHhhccCCCCCCccccHHHHHHHHHcchHHHHHH
Q 044788 231 LFWNLNFWDNASTLAGEVEQPQRTFPKALFSAGL-LTCVAYLLPLLAATGAIPLDQQNWVDGYFAEVAEIIAGKWLKICI 309 (483)
Q Consensus 231 ~~~a~~G~e~~~~~~~E~k~p~r~~p~a~~~~~~-~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (483)
++.+.+|-|+.-.--+- -.+|.+.++-..-.. ...+-|+-....... -| + ...+|+... .+++..+.+
T Consensus 221 V~L~vTGaEALYADmGH--FG~~~Ir~aW~~~v~P~L~LnY~GQgA~ll~-~p-~---~~~NpFf~~----~P~~~~~p~ 289 (622)
T PRK10745 221 VVLAITGVEALYADMGH--FGKFPIRLAWFTVVLPSLVLNYFGQGALLLK-NP-E---AIKNPFFLL----APDWALIPL 289 (622)
T ss_pred eeeeccchHHHhhccCC--CCccceeeeehhhHHHHHHHHhcchHHHHhc-Cc-h---hhcCcHHHh----CChhHHHHH
Confidence 67888999974332222 223445555443332 334445554433332 22 1 234565444 455555555
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHhhhcCCCch-hhhccCCC--CCCCHHHH---HHHHHHHHHHHhcCHHHHHHHHHH
Q 044788 310 EIGACLSIIGLYEAQLSNCAYQILGMTNLGLLPK-VFGSRSSW--FHTPWVGI---FISTLIALTVSYMDFTNIISCVNF 383 (483)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~-~~~~~~~~--~~~P~~ai---~~~~i~~~~~~~~~~~~l~~~~~~ 383 (483)
.+.+.+++.-...+.+.++--+..+.-+-|.+|+ +..+.+++ .+..+-.+ ++..++..++.+-+-+.+.++.++
T Consensus 290 viLATlAtIIASQAvISGaFSl~~QAi~Lg~~Prl~I~hTS~~~~GQIYIP~vNw~Lmv~~i~~vl~F~sS~~La~AYGi 369 (622)
T PRK10745 290 LILATLATVIASQAVISGVFSLTRQAVRLGYLPPMRIIHTSEMESGQIYIPFVNWLLYVAVVIVIVSFEHSSNLAAAYGI 369 (622)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCCCCceEEeCCCccCCceeeHHHHHHHHHHHHeeEEEecCchHHHHHhhh
Confidence 4444444433334444444444455567789995 34444443 23332222 222222222234566778888777
Q ss_pred HHHHHHHHHHHHHHHH
Q 044788 384 LYSLGMLLEFASFLWL 399 (483)
Q Consensus 384 ~~~~~~~~~~~~~~~~ 399 (483)
.......++-+-+...
T Consensus 370 AVt~tM~iTT~L~~~v 385 (622)
T PRK10745 370 AVTGTMVLTSILSTTV 385 (622)
T ss_pred hheeHhHHHHHHHHHH
Confidence 7666666655444433
No 92
>PLN00149 potassium transporter; Provisional
Probab=97.94 E-value=0.0028 Score=66.35 Aligned_cols=255 Identities=16% Similarity=0.079 Sum_probs=134.0
Q ss_pred HHhhhhHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 044788 129 LSGVINLASYPILCIDYLKLVFPIFASGFSHYLAIFVVTLVLSFLNYTGLAIVGYTAVTLGVVSLIPFLFLTVIAIPKID 208 (483)
Q Consensus 129 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~ 208 (483)
-+.+++.+....+..+-+....|....+.....++++++++++.+.-+|....++...-...+=++.+..+++..+.+.+
T Consensus 168 gDgvlTPAISVLSAVeGl~v~~~~~~~~~vvv~is~~ILv~LF~~Q~~GT~kvg~~FgPIml~Wf~~i~~iGiyni~~~~ 247 (779)
T PLN00149 168 GDGVLTPAISVFSAVSGLELSMSKEHHKYVEVPVACIILIGLFALQHYGTHRVGFLFAPVVLTWLLCISAIGVYNIFHWN 247 (779)
T ss_pred hccccchhHHHHHHhhcccccCCCccCCceehHHHHHHHHHHHHHhccccHHHhhhhhhHHHHHHHHHHHHHHHHHHhcC
Confidence 34667777777777777776654322323334577777888888888998888777655444445555555566665555
Q ss_pred cccccccCCCC--------CCCchHHHHHHHHHHhcchHhhhh-hhhhccCcCcchHHHHHHHHH-HHHHHHHHHHHHHh
Q 044788 209 SIRWISLGQNG--------VPKNWRLFFNTLFWNLNFWDNAST-LAGEVEQPQRTFPKALFSAGL-LTCVAYLLPLLAAT 278 (483)
Q Consensus 209 ~~~~~~~~~~~--------~~~~~~~~~~~~~~a~~G~e~~~~-~~~E~k~p~r~~p~a~~~~~~-~~~~~y~l~~~~~~ 278 (483)
+.-+...++.. ...+| -.+.+++.+.+|-|+.-. ++.-- +|.+.++-..-+. ...+.|+-....+.
T Consensus 248 p~Vl~AlnP~y~~~f~~~~~~~g~-~~LGgV~L~iTG~EALyADlGHF~---~~~Ir~aw~~~V~P~L~L~Y~GQaA~l~ 323 (779)
T PLN00149 248 PHVYQALSPYYMYKFLKKTQRGGW-MSLGGILLCITGSEAMFADLGHFS---QLSIKIAFTSLVYPSLILAYMGQAAYLS 323 (779)
T ss_pred HhHhhhcCHHHHHHHHHHCCCcee-EeecchhhcccchhhhhhcccCCC---ccceeeeehhhHHHHHHHHhhhHHHHHh
Confidence 55444433221 01111 123456789999997433 33333 3445555443222 33344544443333
Q ss_pred hccCCCCCCccccHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCCCch-hhhccCCCC--CC-
Q 044788 279 GAIPLDQQNWVDGYFAEVAEIIAGKWLKICIEIGACLSIIGLYEAQLSNCAYQILGMTNLGLLPK-VFGSRSSWF--HT- 354 (483)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~-~~~~~~~~~--~~- 354 (483)
.-|. ...+..+|+.. ..+++..+-+.+.+.++..-...+.+.++--+..+.-+-|.+|+ +.-+.+++. +.
T Consensus 324 -~~p~-~~~~~~~pFy~----~iP~~~~~P~~vlAtlAaIIASQA~ISg~FSii~Qa~~Lg~fPrvkIvhTS~~~~GQIY 397 (779)
T PLN00149 324 -KHHV-IESDYRIGFYV----SVPEKLRWPVLVIAILAAVVGSQAIITGTFSIIKQCSALGCFPKVKIVHTSSKIHGQIY 397 (779)
T ss_pred -cCcc-hhccccCcHHH----hCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCcccCCcee
Confidence 2222 12223345433 34556666555555555444444444444455555667789995 344444432 22
Q ss_pred -CHHHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Q 044788 355 -PWVGI-FISTLIALTVSYMDFTNIISCVNFLYSLGMLLEF 393 (483)
Q Consensus 355 -P~~ai-~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 393 (483)
|..-- ++..+++..+.+-+-+.+.++.++......+++-
T Consensus 398 IP~vNw~Lmv~~i~vv~~F~~s~~l~~AYGiAV~~vM~iTT 438 (779)
T PLN00149 398 IPEINWTLMLLCLAVTVGFRDTKRLGNASGLAVITVMLVTT 438 (779)
T ss_pred eHHHHHHHHHHHHhheeEecChHHHHHHhhhhhehHHHHHH
Confidence 33222 2222222222355677888877776555555544
No 93
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=97.85 E-value=0.00015 Score=67.34 Aligned_cols=241 Identities=15% Similarity=0.128 Sum_probs=142.0
Q ss_pred ccccccccchhHHHhhhhhhcc-cccCchhhHhhhChHHHHHHHHHHHHHHHH---HHHHHHHHhh---ccCCCCChHHH
Q 044788 37 TVTSKKLSLLPLIFLIYFEVAG-GPYGEEPAVGAAGPLFAILGFLIFPFIWSI---PEALVTAELA---TTFPGNGGYVI 109 (483)
Q Consensus 37 ~~~~r~l~~~~~~~~~i~~~iG-g~~~~~~~~~~~G~~~~i~~~~~~~~~~~~---~~~l~~~el~---~~~p~~Gg~y~ 109 (483)
.+-+.+++.++...-+-..+-| -+.++|.++..+|.. .+.+.+..+..... ...-|+.|=. ......-++-.
T Consensus 111 Ge~~~kI~a~qAaWNVTNAIQGMFivgLP~AvlhGGyw-~i~amvg~A~vCcyTGk~Li~CLYE~~~dGevVrvRdsYva 189 (524)
T KOG4303|consen 111 GEASEKISALQAAWNVTNAIQGMFIVGLPIAVLHGGYW-SIGAMVGVAYVCCYTGKLLIECLYENGEDGEVVRVRDSYVA 189 (524)
T ss_pred CCCCCccHHHHHhhhhhhhhheeeEeccceeeeEcchh-HHHHHHhhhhhhhccchhhhhhhccCCCCCcEEEeehhHHH
Confidence 3445678888887666665545 346788888888884 33333333321010 1122333322 22222323333
Q ss_pred hHHHHhCChhH-HHHHHHHHHHhhhhHHHHHHHHHHHHHHhccccccc--hHHHHHHHHHHHHHHHHHhhchhHHHHHHH
Q 044788 110 WAHHAFGPFWG-SLMGSWKFLSGVINLASYPILCIDYLKLVFPIFASG--FSHYLAIFVVTLVLSFLNYTGLAIVGYTAV 186 (483)
Q Consensus 110 ~~~~~~g~~~g-~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~ 186 (483)
.+..-++|.+| -.+.-+.+.....++..+....++.+..-+|++.-+ -+..+.++ .++-..+ +...|..+++..
T Consensus 190 IA~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~~svd~~sWm~i~~a-~LLpc~F--Lk~Lk~VS~lSf 266 (524)
T KOG4303|consen 190 IADFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPGLSVDKASWMMITSA-SLLPCSF--LKDLKIVSRLSF 266 (524)
T ss_pred HHHHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCCCCCccccchhhhhhH-HHhhhHH--HHHHHHHHHHHH
Confidence 44444888887 677888889999999999999999999999965421 12222232 2222222 257788888888
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccccccCCCCCCCchHHHHHHHHHHhcchHhhhhhhhhccCcCcchHHHHHHHHHHH
Q 044788 187 TLGVVSLIPFLFLTVIAIPKIDSIRWISLGQNGVPKNWRLFFNTLFWNLNFWDNASTLAGEVEQPQRTFPKALFSAGLLT 266 (483)
Q Consensus 187 ~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~p~r~~p~a~~~~~~~~ 266 (483)
..++-+++.-++++...+.....=.|....+.-.-..+.-....+.|+|+-.--.+++-+.||||.+ +-.-+-|+.+..
T Consensus 267 ~ct~sH~viN~i~v~YCLs~~~dW~wskv~Fsidi~~fPisvG~iVFsYTSqIFLP~LEGNM~~ps~-Fn~Ml~WsHIAA 345 (524)
T KOG4303|consen 267 FCTISHLVINLIMVLYCLSFVSDWSWSKVTFSIDINTFPISVGMIVFSYTSQIFLPNLEGNMKNPSQ-FNVMLKWSHIAA 345 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccceeEEEEEEcccCceEEEEEEEeeeceeeccccccccCChhH-heeeeehHHHHH
Confidence 8888888776666666554322211211110000001111122346788877778999999999965 666777888888
Q ss_pred HHHHHHHHHHHhhccC
Q 044788 267 CVAYLLPLLAATGAIP 282 (483)
Q Consensus 267 ~~~y~l~~~~~~~~~~ 282 (483)
.++=.+..........
T Consensus 346 aVfK~~Fg~~~fLTf~ 361 (524)
T KOG4303|consen 346 AVFKVVFGMLGFLTFG 361 (524)
T ss_pred HHHHHHHHHheeeeec
Confidence 7777766665555444
No 94
>PLN00151 potassium transporter; Provisional
Probab=97.82 E-value=0.0016 Score=67.99 Aligned_cols=251 Identities=16% Similarity=0.077 Sum_probs=131.6
Q ss_pred HHhhhhHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 044788 129 LSGVINLASYPILCIDYLKLVFPIFASGFSHYLAIFVVTLVLSFLNYTGLAIVGYTAVTLGVVSLIPFLFLTVIAIPKID 208 (483)
Q Consensus 129 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~ 208 (483)
-+.+++.+....+..+-+....|.+..++ ...++++++++++.+.-+|....+++..-+..+=++.+..+++..+.+.+
T Consensus 245 GDGvlTPAISVLSAVeGL~v~~p~l~~~~-VV~Is~~ILv~LF~~Q~~GT~kVg~~FgPImllWFl~i~~iGiynI~~~~ 323 (852)
T PLN00151 245 GDGVLTPAMSVMSAVSGLKVGVPGFGQDA-VVMISVAFLVILFSVQRFGTSKVGFAFGPALALWFCSLGGIGIYNLVKYD 323 (852)
T ss_pred cccccccchhhhhhhccccccCCcCCCCe-ehhHHHHHHHHHHHHHhccchhhhhhhccHHHHHHHHHHHHHHHHHHhcC
Confidence 34666777777777777776666654332 34567777777888888898888877654444444555555566655555
Q ss_pred cccccccCCCC--------CCCchHHHHHHHHHHhcchHhhhh-hhhhccCcCcchHHHHHHHHH-HHHHHHHHHHHHHh
Q 044788 209 SIRWISLGQNG--------VPKNWRLFFNTLFWNLNFWDNAST-LAGEVEQPQRTFPKALFSAGL-LTCVAYLLPLLAAT 278 (483)
Q Consensus 209 ~~~~~~~~~~~--------~~~~~~~~~~~~~~a~~G~e~~~~-~~~E~k~p~r~~p~a~~~~~~-~~~~~y~l~~~~~~ 278 (483)
+.-+...++.. ...+| -.+.+++.+.+|-|+.-. ++.-- +|.+..+-..-+. ...+-|+-... ..
T Consensus 324 p~Vl~AlnP~Y~~~Ff~~~~~~gw-~~LGgVvLciTGaEALfADLGHFg---~~sIqiaw~~~V~P~LlL~Y~GQaA-~L 398 (852)
T PLN00151 324 SSVFRAFNPVYIYYFFKRNSTKAW-SALGGCVLCATGSEAMFADLGYFS---VRSIQLAFTCLVLPCLLLAYMGQAA-YL 398 (852)
T ss_pred HHHHhhhCHHHHHHHHHhCCCceE-EEecceeeeeccchhhhcccCCCC---ccceeeeehhhHHHHHHHHHcchHH-HH
Confidence 55444333221 01121 123456788899997433 33333 3445555443232 23333444333 23
Q ss_pred hccCCCCCCccccHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCCCch-hhhccCCCC--CC-
Q 044788 279 GAIPLDQQNWVDGYFAEVAEIIAGKWLKICIEIGACLSIIGLYEAQLSNCAYQILGMTNLGLLPK-VFGSRSSWF--HT- 354 (483)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~-~~~~~~~~~--~~- 354 (483)
..-|.+ ..+|+. ...++++.+-+.+.+.++..-...+.+.++--+..+.-+-|.+|+ +.-+.+++. +.
T Consensus 399 ~~~p~~----~~npFy----~svP~~~~wP~~vlAtlAaIIASQA~ISgtFSii~Qai~Lg~fPRvkIvHTS~~~~GQIY 470 (852)
T PLN00151 399 MKNPDS----AEQIFF----SSVPSSLFWPVFLIANLAALIASRAMTTATFSCIKQSMALGCFPRLKIIHTSRKFMGQIY 470 (852)
T ss_pred hcCccc----ccCcHH----HhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEeCCCccCCcee
Confidence 322221 334443 334556656555555554444444444444445555566789995 344444432 22
Q ss_pred -CHHHHH-HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Q 044788 355 -PWVGIF-ISTLIALTVSYMDFTNIISCVNFLYSLGMLLEF 393 (483)
Q Consensus 355 -P~~ai~-~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 393 (483)
|..--+ +..+++..+.+-+-+.+.++.++......+++-
T Consensus 471 IP~vNw~Lmv~~i~v~l~F~~s~~l~~AYGiAV~~vM~iTT 511 (852)
T PLN00151 471 IPVINWFLLVMCLVVVCSFRSITDIGNAYGIAEVGVMMVST 511 (852)
T ss_pred eHHHHHHHHHHHHhheeeecCHHHHHHHhhhhhhhhhhHHH
Confidence 332222 222222223355677888887776665555554
No 95
>PLN00148 potassium transporter; Provisional
Probab=97.81 E-value=0.0024 Score=66.79 Aligned_cols=253 Identities=14% Similarity=0.076 Sum_probs=134.0
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 044788 127 KFLSGVINLASYPILCIDYLKLVFPIFASGFSHYLAIFVVTLVLSFLNYTGLAIVGYTAVTLGVVSLIPFLFLTVIAIPK 206 (483)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~ 206 (483)
.+-+.+++.+....+..+-+....|.+..++ ...+++++++.++.+.-+|....+++..-...+=++.+..+++..+.+
T Consensus 166 ~~gDgvlTPAISVLSAVeGl~v~~p~~~~~~-vv~is~~ILv~LF~vQ~~GT~kVg~~FgPIm~lWf~~i~~iGiyni~~ 244 (785)
T PLN00148 166 VIGDGVLTPAISVLSSVSGLQVTETKLTDGE-LVLLACVILVGLFALQHCGTHRVAFMFAPIVIIWLLSIGSIGLYNIIH 244 (785)
T ss_pred HHhccccchhHHHHHHhccceecCCCCCCCe-ehhHHHHHHHHHHHHhccccHHHHhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 3345677778777777777776667664333 345666777778888888988888776554444455555566666655
Q ss_pred cccccccccCCCC--------CCCchHHHHHHHHHHhcchHhhhh-hhhhccCcCcchHHHHHHHHH-HHHHHHHHHHHH
Q 044788 207 IDSIRWISLGQNG--------VPKNWRLFFNTLFWNLNFWDNAST-LAGEVEQPQRTFPKALFSAGL-LTCVAYLLPLLA 276 (483)
Q Consensus 207 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~a~~G~e~~~~-~~~E~k~p~r~~p~a~~~~~~-~~~~~y~l~~~~ 276 (483)
.++.-+...++.. ...+| -.+.+++.+.+|-|+.-. ++.--| |.+.++-..-+. ...+-|+-....
T Consensus 245 ~~p~Vl~AlnP~y~~~ff~~~~~~g~-~~LGgV~L~iTGaEALyADlGHFg~---~~Iriaw~~~V~P~L~L~Y~GQaA~ 320 (785)
T PLN00148 245 WNPKIIHALSPYYIIKFFRVTGKDGW-ISLGGILLSITGTEAMFADLGHFTA---ASIRLAFATVIYPCLVVQYMGQAAF 320 (785)
T ss_pred cCHHHhhhcCHHHHHHHHHhCCCceE-EeecchheeccchhhhhhhccCCCc---cceEEeeeehHHHHHHHHHcchHHH
Confidence 5555444333211 01111 123456788999997433 333333 445555443322 333344444333
Q ss_pred HhhccCCCCCCccccHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCCCch-hhhccCCCC--C
Q 044788 277 ATGAIPLDQQNWVDGYFAEVAEIIAGKWLKICIEIGACLSIIGLYEAQLSNCAYQILGMTNLGLLPK-VFGSRSSWF--H 353 (483)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~-~~~~~~~~~--~ 353 (483)
+ ..-| + ...+|+... .+++..+-+.+.+.++..-...+.+.++--+..+.-+-|.+|+ +.-+.+++. +
T Consensus 321 l-l~~p-~---~~~npFf~~----iP~~~~~P~~vlAtlAtIIASQA~ISg~FSi~~Qai~Lg~fPrvkIvhTS~~~~GQ 391 (785)
T PLN00148 321 L-SKNI-P---SIPNSFYDS----IPDPVFWPVFVIATLAAIVGSQAVITATFSIVKQCHALGCFPRVKVVHTSKHIYGQ 391 (785)
T ss_pred H-hcCc-c---cccCcHHHh----CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccCCc
Confidence 3 3223 2 133454333 4555555555555554444444444444445555566789995 344445432 2
Q ss_pred C--CHHHHH-HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Q 044788 354 T--PWVGIF-ISTLIALTVSYMDFTNIISCVNFLYSLGMLLEF 393 (483)
Q Consensus 354 ~--P~~ai~-~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 393 (483)
. |..--+ +..+++..+.+-+-+.+.++.++......+++-
T Consensus 392 IYIP~vNw~Lmv~~i~vv~~F~~s~~la~AYGiAV~~vM~iTT 434 (785)
T PLN00148 392 IYIPEINWILMILTLAVTIGFRDTTLIGNAYGLACMTVMFITT 434 (785)
T ss_pred eeeHHHHHHHHHHHHHhheeeccchhHHHhhhhheeeHHHHHH
Confidence 2 432222 222233333355667777777766555444443
No 96
>COG3158 Kup K+ transporter [Inorganic ion transport and metabolism]
Probab=97.51 E-value=0.0086 Score=59.69 Aligned_cols=303 Identities=15% Similarity=0.135 Sum_probs=138.0
Q ss_pred HHHHHHHHHHhhccCCC--CChHHHhH---HHHhCChh------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcccccc
Q 044788 87 SIPEALVTAELATTFPG--NGGYVIWA---HHAFGPFW------GSLMGSWKFLSGVINLASYPILCIDYLKLVFPIFAS 155 (483)
Q Consensus 87 ~~~~~l~~~el~~~~p~--~Gg~y~~~---~~~~g~~~------g~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 155 (483)
.+.+..-|.-+.-+--+ +||..... ++..++.. |.+-+-.++-+.+.+.+....+..+-+....|...+
T Consensus 67 tlIVTiKYv~~vlRADN~GEGGilsL~aL~~~~~~~~~~~l~~~g~iGaalf~GD~vITPAiSVlSAvEGL~iv~p~~~~ 146 (627)
T COG3158 67 TLIVTIKYVLFVLRADNNGEGGILSLMALARRAAPRRTALLIILGLIGAALFYGDAVITPAISVLSAVEGLEIVTPALDP 146 (627)
T ss_pred HHHHHHhhheeEEecCCCCCchhhhHHHHHHhhcCCCchhhhhHHHHhHHHHhcccccchhHHHHHHhccccccCccccC
Confidence 33345556555554433 58887654 44444332 333333334456777777777777777777665542
Q ss_pred chHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCC-----CCCchHHH--H
Q 044788 156 GFSHYLAIFVVTLVLSFLNYTGLAIVGYTAVTLGVVSLIPFLFLTVIAIPKIDSIRWISLGQNG-----VPKNWRLF--F 228 (483)
Q Consensus 156 ~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~-----~~~~~~~~--~ 228 (483)
....+++++++.++.+.-+|....+++-.-...+=+..+....+..+. .+++-+...++.. ...++.++ +
T Consensus 147 --~Vvpitl~IL~~LF~iQ~~GT~~Vg~~FGPVm~lWF~~l~~~Gl~~i~-~~p~IL~AiNP~yAi~fl~~~~~~gf~vL 223 (627)
T COG3158 147 --YVVPITLIILVLLFLIQRFGTGRVGKLFGPVMLLWFLALAVLGLINII-DDPEILRAINPYYAVHFLLEEGFVGFFVL 223 (627)
T ss_pred --ccHHHHHHHHHHHHHHhcccchhhhhhhccHHHHHHHHHHHHHHHHHh-cCHHHHHHhChHHHHHHHHhCCceEEEEe
Confidence 345667777777888888888887776533333223333333332221 1222222222110 00011111 2
Q ss_pred HHHHHHhcchHhhhhhhhhccCcCcchHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCccccHHHHHHHHHcchHHHHH
Q 044788 229 NTLFWNLNFWDNASTLAGEVEQPQRTFPKALFSAGLLTCVAYLLPLLAATGAIPLDQQNWVDGYFAEVAEIIAGKWLKIC 308 (483)
Q Consensus 229 ~~~~~a~~G~e~~~~~~~E~k~p~r~~p~a~~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (483)
..++.+.+|-|+.-.--+-. -||.+.+|=..-..=+.+ .+++..++.=-.+-....+|+..++ +.|..+-
T Consensus 224 GaVfLavTGaEALYADmGHf--Gr~pI~~AWf~vv~P~L~----LNY~GQGA~vL~~p~a~~npFF~~~----P~~aliP 293 (627)
T COG3158 224 GAVFLAVTGAEALYADMGHF--GRKPIRVAWFFVVLPCLL----LNYFGQGALLLSNPEAIGNPFFLLA----PDWALIP 293 (627)
T ss_pred eeeeeeeccHHHHHhhcccc--CCccHHHHHHHHHHHHHH----HHHccccceeccCcccccCcHHHhC----hhhHHHH
Confidence 23567788988754322222 234454443322221222 2222222211111112334544333 3443333
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCCCch-hhhccCCC--CC--CCHHHHHH-HHHHHHHHHhcCHHHHHHHHH
Q 044788 309 IEIGACLSIIGLYEAQLSNCAYQILGMTNLGLLPK-VFGSRSSW--FH--TPWVGIFI-STLIALTVSYMDFTNIISCVN 382 (483)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~-~~~~~~~~--~~--~P~~ai~~-~~i~~~~~~~~~~~~l~~~~~ 382 (483)
+.+....++.-...+.+.++--+..+.-+-|.+|+ ...+.+++ .+ .|..-.++ ..++..++.+-+-+.+.++.+
T Consensus 294 ~viLAT~ATVIASQAvISGaFSLtrQAi~Lg~lPrm~I~~TSe~~~GQIYiP~VN~~L~~~V~~~vl~F~~S~~LAaAYG 373 (627)
T COG3158 294 LVILATAATVIASQAVISGAFSLTRQAIRLGYLPRMRIRHTSETESGQIYIPAVNWLLLVAVVFVVLGFGSSSNLAAAYG 373 (627)
T ss_pred HHHHHHHHHHHHHHHHHhhHhHHHHHHHHhCCCCceEEEecCCcccceEEehHHHHHHHHHHhheeeEecChHHHHHhhC
Confidence 22222222111111222222222233446789995 34444442 22 35443333 333333333556677777777
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 044788 383 FLYSLGMLLEFASFLWLRKK 402 (483)
Q Consensus 383 ~~~~~~~~~~~~~~~~~r~~ 402 (483)
+...-..+++.+-+...-++
T Consensus 374 iAVTgtM~iTt~L~~~~~~~ 393 (627)
T COG3158 374 IAVTGTMVITTILLTVVMRK 393 (627)
T ss_pred hheeehhHHHHHHHHHHHHH
Confidence 76666666655444433333
No 97
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=97.36 E-value=0.15 Score=48.65 Aligned_cols=279 Identities=13% Similarity=0.074 Sum_probs=151.6
Q ss_pred cccccccchhHHHhhhhhhcc-cc-cCchhhHhhhChHHHHHHHHHHHHHHHHHHH-H-------HHHHhhccCCCCChH
Q 044788 38 VTSKKLSLLPLIFLIYFEVAG-GP-YGEEPAVGAAGPLFAILGFLIFPFIWSIPEA-L-------VTAELATTFPGNGGY 107 (483)
Q Consensus 38 ~~~r~l~~~~~~~~~i~~~iG-g~-~~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~-l-------~~~el~~~~p~~Gg~ 107 (483)
.-.|+++.+-+.....++-++ +. .+-|++.+.-|-.+.+++ .+ .++.+ + -++.+++.+. +=..
T Consensus 36 lgnRsmgg~VlAmt~~aTYisaSSFigGpgaayk~GlgwvlLa-----~i-qvp~~~l~lgvlgkk~~~~ar~~n-AltI 108 (473)
T COG4145 36 LGNRSMGGIVLAMTFTATYISASSFIGGPGAAYKYGLGWVLLA-----MI-QVPTVWLALGVLGKKFAILAREYN-ALTI 108 (473)
T ss_pred hccCcccceehhhHHHHHHHHHhhhcCCCcHHHHhchHHHHHH-----HH-HHHHHHHHHHHhhhHHHHHHHHhC-CeeH
Confidence 446788877777666666655 33 344555555555333332 22 22222 2 2334444442 2244
Q ss_pred HHhHHHH-hCChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhchhHHH---H
Q 044788 108 VIWAHHA-FGPFWGSLMGSWKFLSGVINLASYPILCIDYLKLVFPIFASGFSHYLAIFVVTLVLSFLNYTGLAIVG---Y 183 (483)
Q Consensus 108 y~~~~~~-~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~---~ 183 (483)
-++.++- -++...++.+....+.....+.+.-.+.+..+....+-.- .....+.+..+ .....+-|-|... .
T Consensus 109 ~D~l~~RY~s~fl~~las~~Lifff~~~m~~qfiGgarLlE~~~gidY-~tgL~ifa~~V---~iYt~fGGFRAvvltD~ 184 (473)
T COG4145 109 NDLLFARYQSRFLVWLASLSLIFFFVGAMTVQFIGGARLLETALGIDY-TTGLLIFAVSV---AIYTAFGGFRAVVLTDT 184 (473)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHCCCc-hhhHHHHHHHH---HHHHhhcceeeeehHHH
Confidence 4555444 4678899999999999999999999999999888765311 11122222222 2223334555444 4
Q ss_pred HHHHHHHHHHHHHHHHHHHH----------hcccccccccccCCCC--CCCchHHHHHHHHHHhcchHhhhhhhhhccCc
Q 044788 184 TAVTLGVVSLIPFLFLTVIA----------IPKIDSIRWISLGQNG--VPKNWRLFFNTLFWNLNFWDNASTLAGEVEQP 251 (483)
Q Consensus 184 ~~~~~~~~~i~~~~~~~i~~----------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~p 251 (483)
+|.....+.-+.+..-.+.. +.+.+++...|.+.+. .++-..++.-.+.+.-.|..-...-.-..||.
T Consensus 185 IQG~vmligtv~Lf~~~i~~~GG~~~av~tl~~iDp~lv~P~~~~~~l~~~Fm~Sfwilv~~gvlglP~t~vr~ia~kDs 264 (473)
T COG4145 185 IQGLVMLIGTVVLFVGVIYAGGGLSNAVETLTTIDPGLVTPQGADDILDPPFMASFWILVCFGVLGLPHTAVRCIAFKDS 264 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHhCCccccCCCCCcccccchHHHHHHHHHHHHHhcCcHHHHHHHhccch
Confidence 55333332222222211111 1123444444433332 01111122222333334433333333344774
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHh---hccCCCCCCccccHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhh
Q 044788 252 QRTFPKALFSAGLLTCVAYLLPLLAAT---GAIPLDQQNWVDGYFAEVAEIIAGKWLKICIEIGACLSIIGLYEAQLSNC 328 (483)
Q Consensus 252 ~r~~p~a~~~~~~~~~~~y~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (483)
|.+.++|+++.+++.++.+.+-.+.. .+.| +++..|..+..++-+..+|....++..+-+.+..++.++...-.
T Consensus 265 -kaih~gmiigt~vi~il~~gmhl~G~~graViP--dlt~~D~Vip~lalkvlpp~~agifl~apmaAiMSTIds~L~~~ 341 (473)
T COG4145 265 -KAIHRGMIIGTIVIAILMLGMHLAGALGRAVIP--DLTVVDLVIPTLALKVLPPFAAGIFLAAPMAAIMSTINSQLLQS 341 (473)
T ss_pred -hHHhcCcchHHHHHHHHHHHHHHhhhhhhhhcC--CCCccchhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999988888777665533 2333 34446667778888888888777777777777888887776644
Q ss_pred hH
Q 044788 329 AY 330 (483)
Q Consensus 329 sR 330 (483)
+-
T Consensus 342 ss 343 (473)
T COG4145 342 SS 343 (473)
T ss_pred HH
Confidence 43
No 98
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=97.24 E-value=0.29 Score=49.70 Aligned_cols=160 Identities=13% Similarity=0.153 Sum_probs=76.8
Q ss_pred cccccccccchhHHHhhhhhhcc-ccc--CchhhHh--h-------hC-hH------------HHHHHHHHHHHHHHHHH
Q 044788 36 ITVTSKKLSLLPLIFLIYFEVAG-GPY--GEEPAVG--A-------AG-PL------------FAILGFLIFPFIWSIPE 90 (483)
Q Consensus 36 ~~~~~r~l~~~~~~~~~i~~~iG-g~~--~~~~~~~--~-------~G-~~------------~~i~~~~~~~~~~~~~~ 90 (483)
+++.|.+++.++..++.+++-+| |+. +...-+. . .+ +. ..+.+|.+.++. .++.
T Consensus 68 g~d~kPefS~~sW~aMlf~aGig~GivfwgvaEP~~~~~~pP~~~~p~s~~A~~~A~~~~~fHWG~~~Wa~Y~~~-~l~~ 146 (485)
T PF02028_consen 68 GDDAKPEFSTFSWFAMLFCAGIGAGIVFWGVAEPLYHYQSPPFGIEPGSPEAAEWAMAYSFFHWGFHAWAIYALV-GLAI 146 (485)
T ss_dssp STSS--SS-HHHHHHHHHHHCSSHHHHHHHHHHHHHHHHS-STT-TTT-HHHHHHHHHHHHHHTSHHHHHHHHHH-HHHH
T ss_pred CCCCCCCCCchHHHHHHHHHHhcchhhcchhHhhHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHH-HHHH
Confidence 34566678888999998887776 431 2111110 0 01 10 124556666665 5655
Q ss_pred HHHHHHhhccCCCCChHHHhHHHHhCChhHHHHHHHHHHHhhhhHHH----HHHHHHHHHHHhccccccchHHHHHHHHH
Q 044788 91 ALVTAELATTFPGNGGYVIWAHHAFGPFWGSLMGSWKFLSGVINLAS----YPILCIDYLKLVFPIFASGFSHYLAIFVV 166 (483)
Q Consensus 91 ~l~~~el~~~~p~~Gg~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 166 (483)
++.+..-.....-+...|....+......|.+.-....++.+...+. .....+.-++..++..++......+.+++
T Consensus 147 ay~~y~k~~~~~~ss~l~pl~g~~~~g~~g~~ID~l~i~a~~~GvatslGlg~~qi~~gl~~~~Gi~~~~~~~~~ii~~~ 226 (485)
T PF02028_consen 147 AYFFYNKGKPLRISSALYPLLGDRINGPLGKIIDILAIFATIFGVATSLGLGVPQISAGLSSLFGIPNTFGLQIIIIIVI 226 (485)
T ss_dssp HHHHHTS---SSGGGGCHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTSSSTHHHHHHHHHHH
T ss_pred heeeeecCCCCchhhhhhhhcCCcccCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHcCCCCchHHHHHHHHHH
Confidence 66555433333334555555554444556666666655555544333 33334444555554322333344444444
Q ss_pred HHHHHHHHhh----chhHHHHHHHHHHHHHHHHH
Q 044788 167 TLVLSFLNYT----GLAIVGYTAVTLGVVSLIPF 196 (483)
Q Consensus 167 ~~~~~~i~~~----g~~~~~~~~~~~~~~~i~~~ 196 (483)
..+.+.-... |+|..+.+|..+....++.+
T Consensus 227 ~~i~~~S~~~Gl~kGIk~LS~~n~~l~~~ll~~v 260 (485)
T PF02028_consen 227 TVIFTISAVSGLDKGIKRLSNINVYLAFALLLFV 260 (485)
T ss_dssp HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444544444 55556666655555444333
No 99
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=96.91 E-value=0.51 Score=46.68 Aligned_cols=283 Identities=13% Similarity=0.117 Sum_probs=150.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCCChHHHhH-HHHhCChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcccc
Q 044788 75 AILGFLIFPFIWSIPEALVTAELATTFPGNGGYVIWA-HHAFGPFWGSLMGSWKFLSGVINLASYPILCIDYLKLVFPIF 153 (483)
Q Consensus 75 ~i~~~~~~~~~~~~~~~l~~~el~~~~p~~Gg~y~~~-~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 153 (483)
...+|..+-.+ ..++.+|--+++-+- ..-++. .|.-.+..-++.+..-.+...........+.+..+..+++..
T Consensus 79 Y~iG~~~Gy~i----~~fL~A~~LRk~Gky-T~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l~gv~ 153 (529)
T COG4147 79 YSIGWTGGYPI----LLFLIAEYLRKLGKY-TFADFIADRYKSNPARLLAAIGTIIVSFLYLIAQMVGAGLLISLLLGVP 153 (529)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHhcCCc-chHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCC
Confidence 34445554332 466777777777432 233333 344456677777777777777777777888888888777631
Q ss_pred ccchHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHhccc--cccc-------cc------ccCCC
Q 044788 154 ASGFSHYLAIFVVTLVLSFLNYTGLAIVGYTAVTLGVVSLIPFLFLTVIAIPKI--DSIR-------WI------SLGQN 218 (483)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~--~~~~-------~~------~~~~~ 218 (483)
....+.+...+......+-|+|...+.|.+=.++.+...++..+....+. ++.. .+ ...++
T Consensus 154 ----~~vgv~ig~ilm~~Yvv~GGM~atTW~Qi~qavlLi~a~~i~ai~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p 229 (529)
T COG4147 154 ----YHVGVVIGGILMMVYVVLGGMKATTWVQIIQAVLLIVAALIMAIMIMWKLGGNPNPLFAEAVTVHPKDDGSDIMEP 229 (529)
T ss_pred ----ceeehhhHhHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHhhcCcccCcccccCC
Confidence 12222333344445556678888888876554444444433333322221 1111 01 11111
Q ss_pred C-CCCchHHHHHHHHHHhcchHhhhhhhhhc-cCcC-cchHHHHHHHHHHHHHHHHHHHHHHh----hcc----CC----
Q 044788 219 G-VPKNWRLFFNTLFWNLNFWDNASTLAGEV-EQPQ-RTFPKALFSAGLLTCVAYLLPLLAAT----GAI----PL---- 283 (483)
Q Consensus 219 ~-~~~~~~~~~~~~~~a~~G~e~~~~~~~E~-k~p~-r~~p~a~~~~~~~~~~~y~l~~~~~~----~~~----~~---- 283 (483)
+ ...++..++.-.+--..|.-..+|.--.. --|. |+.+|+..++...++.+|+...+... .+. +.
T Consensus 230 Gl~~~~~i~~isl~~aLm~GTAgLPHil~RFfTvp~~k~AR~Sv~wA~~fIg~fYi~~~~ig~~A~~~v~t~~~~~p~w~ 309 (529)
T COG4147 230 GLLYKDPIDFISLGFALMVGTAGLPHILMRFFTVPDAKEARKSVFWATGFIGIFYILTPIIGAGARLLVGTNPVGKPAWA 309 (529)
T ss_pred CCcccCHHHHHHHHHHHHHccCCCCeEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcchh
Confidence 1 23455566655555556766666653222 1222 66678888999999999998765432 111 11
Q ss_pred -------CC-----CCccccHHHHHHHHHc-chHHHHHHHHHHHHHHHHHHHHHhhh----hhHHHHHhhhcCCCchhhh
Q 044788 284 -------DQ-----QNWVDGYFAEVAEIIA-GKWLKICIEIGACLSIIGLYEAQLSN----CAYQILGMTNLGLLPKVFG 346 (483)
Q Consensus 284 -------~~-----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----~sR~l~~~a~dg~lP~~~~ 346 (483)
|. ....+.....++...+ +++...++..+.+...+++.-+.... .++=+|++- +.+..+
T Consensus 310 ~~w~~~~D~~~~gi~~~~n~a~vlaa~~i~~g~~v~g~vsAga~AtaLstaaGL~l~iasavsHDiY~~v----ik~~as 385 (529)
T COG4147 310 AKWIKTGDANGDGIGGWTNMAAVLAAPAIGGGPWVLGFVSAGAFATALSTAAGLLLVIASAVSHDLYAMV----IKKGAT 385 (529)
T ss_pred hcccccccccccccccccchHHHhhhHHhcCCceehhHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHH----hCCCCC
Confidence 11 0111334455566666 68888888777766666655444443 333333332 222233
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHHh
Q 044788 347 SRSSWFHTPWVGIFISTLIALTVSY 371 (483)
Q Consensus 347 ~~~~~~~~P~~ai~~~~i~~~~~~~ 371 (483)
+..+ -..-..+.....+++..+.+
T Consensus 386 e~~~-v~vaRi~~v~~~vva~~lgi 409 (529)
T COG4147 386 EKKE-VRVARIAVVILGVVAILLGI 409 (529)
T ss_pred ccce-ehhHHHHHHHHHHHHHHhee
Confidence 3222 34455555666666665553
No 100
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=95.01 E-value=5.2 Score=41.56 Aligned_cols=92 Identities=11% Similarity=0.145 Sum_probs=48.0
Q ss_pred HHhhchhHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccccc----ccccCCC-CCCCchHHHHHHHHHHhc-chHhhhhhh
Q 044788 173 LNYTGLAIVGYTAVTLGVVSLIPFLFLTVIAIPK-IDSIR----WISLGQN-GVPKNWRLFFNTLFWNLN-FWDNASTLA 245 (483)
Q Consensus 173 i~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~-~~~~~----~~~~~~~-~~~~~~~~~~~~~~~a~~-G~e~~~~~~ 245 (483)
...+|+|..+|+......+..+.++++.+..+.. +..+. +.|+... ..+.-|..++..++|+.. |+....+++
T Consensus 194 ~i~kGi~~~~kv~~~~~~~p~v~l~il~ir~ltl~ga~~Gl~~~~~pd~~~l~~~~vW~~A~~Q~ffsl~ig~G~~it~~ 273 (523)
T PF00209_consen 194 GIWKGIESIGKVMYPTLLLPFVLLIILLIRSLTLPGASEGLKFLFTPDWSKLLDPKVWIAALGQVFFSLSIGFGIMITYG 273 (523)
T ss_dssp TTTTTHHHHHHHHHHHHH---HHHHHHHHHHHT-EEHHHHHHHHHSB-TTGTTSHHHHHHHHHHHHHHTTTTSSHHHHHH
T ss_pred heEeccccccchhhhhhhhhhEEEEEEEEEEEcCCCCCCceEEEecCCcchhhHHHHHHHHHHHHhhccCCCcceEEEEc
Confidence 3457899988887666554444444444433321 11111 1111110 113356777777787765 777788888
Q ss_pred hhccCcCcchHHHHHHHHHH
Q 044788 246 GEVEQPQRTFPKALFSAGLL 265 (483)
Q Consensus 246 ~E~k~p~r~~p~a~~~~~~~ 265 (483)
.-.|+ ++|++|........
T Consensus 274 Sy~~~-~~n~~~~a~~v~~~ 292 (523)
T PF00209_consen 274 SYNKF-KNNIFRDALIVAFI 292 (523)
T ss_dssp TTS-T-TS-SHHHHHHHHHH
T ss_pred CcCCC-CccccccceEEEcC
Confidence 87776 46777755544443
No 101
>PF13906 AA_permease_C: C-terminus of AA_permease
Probab=94.89 E-value=0.09 Score=35.00 Aligned_cols=49 Identities=16% Similarity=0.337 Sum_probs=37.7
Q ss_pred cccCchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 044788 410 FRVPMEMLGLIFMCIIPSGFLVYVMVVATKMVCFVSALLTFFGIFLYFFIKLC 462 (483)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 462 (483)
||.|..+. +..+++...++.+...+..+++...+|+++|+++|+.+.++
T Consensus 1 F~vP~vP~----~P~~si~~ni~Lm~~L~~~twirf~iWl~iGl~iYf~YG~~ 49 (51)
T PF13906_consen 1 FKVPLVPF----LPALSILINIYLMAQLSALTWIRFGIWLAIGLVIYFGYGIR 49 (51)
T ss_pred CCCCcccH----HHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHheeee
Confidence 45666643 33444667778888999999999999999999999987543
No 102
>PRK09928 choline transport protein BetT; Provisional
Probab=94.17 E-value=9 Score=40.53 Aligned_cols=91 Identities=11% Similarity=0.001 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCCCchhhhccCCCCCCCHHHHHHHHHHHHHHHhcC---HHHHHHHHH
Q 044788 306 KICIEIGACLSIIGLYEAQLSNCAYQILGMTNLGLLPKVFGSRSSWFHTPWVGIFISTLIALTVSYMD---FTNIISCVN 382 (483)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~~~~~~~~~~~P~~ai~~~~i~~~~~~~~~---~~~l~~~~~ 382 (483)
..+.....++.++.-..+..-+.+-++-.++..|.=|+ ...+++..=.+++++..+-..++...+ +....-+..
T Consensus 408 ~~i~~~l~~il~~iFfvTSaDS~s~Vla~lts~g~~~~---~~pp~~~RifW~v~ig~la~~LL~~GGL~aLQt~sii~a 484 (679)
T PRK09928 408 FTFSASVATITGLLFYVTSADSGALVLGNFTSKLKDIN---SDAPNWLRVFWSVAIGLLTLGMLMTNGISALQNTTVIMG 484 (679)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHcCCCCCC---CCCCcceeeHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 33444444444444444555566666666666553221 111223333444444333332233333 444444555
Q ss_pred HHHHHHHHHHHHHHHHH
Q 044788 383 FLYSLGMLLEFASFLWL 399 (483)
Q Consensus 383 ~~~~~~~~~~~~~~~~~ 399 (483)
+.+.+..++.+.++++.
T Consensus 485 lPf~~I~ll~~~sl~k~ 501 (679)
T PRK09928 485 LPFSFVIFFVMAGLYKS 501 (679)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56666666666676663
No 103
>KOG3659 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=94.12 E-value=7.9 Score=39.76 Aligned_cols=105 Identities=16% Similarity=0.178 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHhc--ccccccccccCCCC----CCCchHHHHHHHHH
Q 044788 160 YLAIFVVTLVLSFLNYTGLAIVGYTAVTLGVVSLIPFLFLTVIAIP--KIDSIRWISLGQNG----VPKNWRLFFNTLFW 233 (483)
Q Consensus 160 ~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~--~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 233 (483)
.+..+++.+++.+..+.|.|.++|+..+.+..-.+++.+..+.+.. ..+.+...-..+.- ....|..+...+++
T Consensus 255 ~lc~~lv~~liyf~~~kG~kssGKvv~vtallPy~Il~illirgl~l~ga~~g~~y~~~~~~~kl~~~~vW~dAAtqiff 334 (629)
T KOG3659|consen 255 ALCLVLVWLLIYFSLWKGVKSSGKVVWVTALLPYIILLILLVRGLTLPGAKNGIQYYLTPDIEKLKEPSVWIDAATQIFF 334 (629)
T ss_pred HHHHHHHHHHHHHHHhccccccceEEeeehhhHHHHHHHHHHhcccccccccchhheecccHHHHhhHHHHHHHHHHHHh
Confidence 3445555556667888999999998544444333333333333331 11111111111000 12344444444555
Q ss_pred H-hcchHhhhhhhhhccCcCcchHHHHHHHHH
Q 044788 234 N-LNFWDNASTLAGEVEQPQRTFPKALFSAGL 264 (483)
Q Consensus 234 a-~~G~e~~~~~~~E~k~p~r~~p~a~~~~~~ 264 (483)
+ ..|+.+...++.-.|--.+=..=|++.+.+
T Consensus 335 slg~GfG~L~AfaSyn~F~NNc~rDAll~S~i 366 (629)
T KOG3659|consen 335 SLGPGFGVLIAFASYNKFHNNCYRDALLTSII 366 (629)
T ss_pred hcCccchhhhhhhhhcccccchhhhhHHHHHH
Confidence 5 447777777776666443333344444443
No 104
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional
Probab=91.72 E-value=17 Score=37.21 Aligned_cols=155 Identities=11% Similarity=0.126 Sum_probs=71.1
Q ss_pred ccccccchhHHHhhhhhhcc-ccc--CchhhH--hh-------hCh-H------------HHHHHHHHHHHHHHHHHHHH
Q 044788 39 TSKKLSLLPLIFLIYFEVAG-GPY--GEEPAV--GA-------AGP-L------------FAILGFLIFPFIWSIPEALV 93 (483)
Q Consensus 39 ~~r~l~~~~~~~~~i~~~iG-g~~--~~~~~~--~~-------~G~-~------------~~i~~~~~~~~~~~~~~~l~ 93 (483)
.|.+++.++.+++.+++=+| |+. +...-+ .+ ++. . ..+-+|.+.++. .+..+
T Consensus 82 ~kPefs~~sW~aMlf~aG~G~gllfwgvaEP~~h~~~PP~g~e~~s~~A~~~A~~~~~fHWG~~aWaiY~~~-~la~a-- 158 (504)
T PRK03356 82 EKPEFSTASWIFMMFASCTSAAVLFWGSIEIYYYISTPPFGLEPNSTGAKELGLAYSLFHWGPLPWATYSFL-SVAFG-- 158 (504)
T ss_pred CCCCccchHHHHHHHHHhhhhhhhhhhhhhHHHHcCCCCCCCCCCcHHHHHHHHHHHHHHhcHHHHHHHHHH-HHHHH--
Confidence 36788888888888887666 431 111111 10 011 0 124445555544 44333
Q ss_pred HHHhhccCCC---CChHHHhHH-HHhCChhHHHHHHHHHHHhhhhHHHHH----HHHHHHHHHhccccccchHHHHHHHH
Q 044788 94 TAELATTFPG---NGGYVIWAH-HAFGPFWGSLMGSWKFLSGVINLASYP----ILCIDYLKLVFPIFASGFSHYLAIFV 165 (483)
Q Consensus 94 ~~el~~~~p~---~Gg~y~~~~-~~~g~~~g~~~g~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~ 165 (483)
|....+..|. +...|-... |...+..|.+.-....++.+...+... ...+.-++.+++...+......+.++
T Consensus 159 y~~y~~~~p~l~iss~~~pllG~~~~~g~~G~~IDil~v~atv~GvatSLGlg~~qi~~gl~~l~Gi~~~~~~~~~ii~~ 238 (504)
T PRK03356 159 YFFFVRKMDVIRPSSTLVPLVGEKHAKGLFGTIVDNFYLVALIFAMGTSLGLATPLVTECMQWLFGIPHTLQLDAIIITC 238 (504)
T ss_pred HHHHhcCCCcccHHHHHHHHcCCCcccCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCCchHHHHHHHHH
Confidence 3444555553 223333332 112234566666655555555443333 33344444444432222223332222
Q ss_pred HHHHHHHHHh----hchhHHHHHHHHHHHHHHHHH
Q 044788 166 VTLVLSFLNY----TGLAIVGYTAVTLGVVSLIPF 196 (483)
Q Consensus 166 ~~~~~~~i~~----~g~~~~~~~~~~~~~~~i~~~ 196 (483)
+.++++.-.+ +|+|..+.+|..+....++.+
T Consensus 239 i~~if~~S~~~Gl~kGIk~LS~~N~~la~~ll~~v 273 (504)
T PRK03356 239 WIILNAICVACGLQKGVRIASDVRSYLSFLMLGWV 273 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3333333333 567777777766655444433
No 105
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=90.08 E-value=22 Score=35.67 Aligned_cols=293 Identities=11% Similarity=0.035 Sum_probs=130.8
Q ss_pred cccccccccchhHHHhhhhhhcc-cccCchhhHhhhCh--HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCChHHHhH-
Q 044788 36 ITVTSKKLSLLPLIFLIYFEVAG-GPYGEEPAVGAAGP--LFAILGFLIFPFIWSIPEALVTAELATTFPGNGGYVIWA- 111 (483)
Q Consensus 36 ~~~~~r~l~~~~~~~~~i~~~iG-g~~~~~~~~~~~G~--~~~i~~~~~~~~~~~~~~~l~~~el~~~~p~~Gg~y~~~- 111 (483)
-++.+|..++++-..+=.+..++ +.+-...+..+-|- ...+..++++=.+..++ .-+++ +.|..|+.-
T Consensus 49 v~~~~Rtws~~~~~~fW~~~~fnv~Tw~ia~s~l~lGLswwq~~~tv~vG~~~~~~f-----~~lns---~~G~~yhIsF 120 (572)
T KOG2466|consen 49 VPPSRRTWSWWNYIAFWLADSFNVNTWMIAGSALELGLSWWQTWITVWVGYLFTAIF-----LVLNS---RPGSDYHISF 120 (572)
T ss_pred CCcccccccHHHHHHHHHhccccccceeehhhHHhccCCHHHHHHHHHHHHHHHHHH-----HHHcc---CCCcccccce
Confidence 35667889999998887666555 34444333333332 12222222322221221 22222 345666532
Q ss_pred ----HHHhCChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhc----cc-------cc--cchHHHHHHHHHHHHHH-HH
Q 044788 112 ----HHAFGPFWGSLMGSWKFLSGVINLASYPILCIDYLKLVF----PI-------FA--SGFSHYLAIFVVTLVLS-FL 173 (483)
Q Consensus 112 ----~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~----~~-------~~--~~~~~~~~~~~~~~~~~-~i 173 (483)
|..||-..+-.--..-.+..+..-...+...++.++.++ +. +. +......+...+.+++. ..
T Consensus 121 pv~sR~sFGiygS~~pIi~R~vma~vwYg~~awiGgecV~lmL~si~~~~~hipntl~~~~~tt~e~i~FfIFwv~s~~~ 200 (572)
T KOG2466|consen 121 PVLSRSSFGIYGSLWPIINRVVMACVWYGVNAWIGGECVQLMLKSIFKSFSHIPNTLGKPGTTTYEFIGFFIFWVASLPF 200 (572)
T ss_pred eeeeeeehhhhHhHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhhhhcCccccCCCCCchHHHHHHHHHHHHhhhe
Confidence 223443332222222223333333444444454444333 21 11 11223344444444443 34
Q ss_pred HhhchhHHHHHHHHHHHHHHHHHHHHHHHHhccccc-ccccc--cCCCCCCCchHHHHHHHHHHhcchHhhhhhhhh---
Q 044788 174 NYTGLAIVGYTAVTLGVVSLIPFLFLTVIAIPKIDS-IRWIS--LGQNGVPKNWRLFFNTLFWNLNFWDNASTLAGE--- 247 (483)
Q Consensus 174 ~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~~~E--- 247 (483)
.+++.....++..+-.+........+.+..+-+.|. ++... ....+....| .++.+...++.++.....-..+
T Consensus 201 ~~~~p~~ir~lf~~ka~~t~fA~~g~LIw~l~kAhG~G~l~~~~st~~gs~~aW-a~~~~i~~~~~~fstl~~N~pDFsR 279 (572)
T KOG2466|consen 201 YWFPPYKIRHLFTWKAVLTPFAAFGFLIWLLKKAHGLGHLFDSKSTVSGSAHAW-AFVRSIMSCIANFSTLIVNAPDFSR 279 (572)
T ss_pred eeccHHHhhhHHHHHHhhhHHHHHHHHHHHHHhcCCccccccCCCcccccchhH-HHHHHHHHHHhccchhhccCchhHh
Confidence 566788888887777776666666666766655443 22222 2222223333 3445666777776665444444
Q ss_pred -ccCcCcchHHHHHHHHHHHHHHHHHHHHHHhhccCC-CCC--CccccHHHHHHHHH------cchHHHHHHHHHHHHHH
Q 044788 248 -VEQPQRTFPKALFSAGLLTCVAYLLPLLAATGAIPL-DQQ--NWVDGYFAEVAEII------AGKWLKICIEIGACLSI 317 (483)
Q Consensus 248 -~k~p~r~~p~a~~~~~~~~~~~y~l~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 317 (483)
.|+|.. .+.+.+.++.+. +.+..+....+... +.+ .+.-+|+..+-+-. +.+...-++.++..++.
T Consensus 280 F~ksp~a-~~~~Ql~alp~~---~~l~~liGVlv~sa~~~iYG~~~W~Pldil~~~l~~~y~~G~RAgvFfi~~~f~laq 355 (572)
T KOG2466|consen 280 FAKSPNA-IWWGQLIALPLP---FGLTPLIGVLVTSASKIIYGTNYWSPLDILNQWLDTNYSAGARAGVFFIGFGFALAQ 355 (572)
T ss_pred hcCCCCc-cchhhhhhhhhh---hhhhhheeeEehhhhhhhhcccccCHHHHHHHHhccccccccchhhhHHHHHHHHHH
Confidence 455522 333333333222 22222221111111 111 11224543332221 34466666677777777
Q ss_pred HHHHHHHhhhhhHHHHHhhhcCCCchhh
Q 044788 318 IGLYEAQLSNCAYQILGMTNLGLLPKVF 345 (483)
Q Consensus 318 ~~~~~~~~~~~sR~l~~~a~dg~lP~~~ 345 (483)
+++..+.-.-+ -++.-.+.+|+.+
T Consensus 356 l~~NISan~va----agnDl~~L~Pkyi 379 (572)
T KOG2466|consen 356 LGTNISANSVA----AGNDLSALLPKYI 379 (572)
T ss_pred Hhcchhccccc----cchhhHhhCcceE
Confidence 76544332211 2234446778655
No 106
>PRK09950 putative transporter; Provisional
Probab=89.97 E-value=25 Score=36.07 Aligned_cols=19 Identities=21% Similarity=0.343 Sum_probs=15.2
Q ss_pred cccccchhHHHhhhhhhcc
Q 044788 40 SKKLSLLPLIFLIYFEVAG 58 (483)
Q Consensus 40 ~r~l~~~~~~~~~i~~~iG 58 (483)
|.+++.++..++.+++=+|
T Consensus 81 kPefS~~sW~aMlf~aG~G 99 (506)
T PRK09950 81 KPEYSTLSWLFMFICAGLG 99 (506)
T ss_pred CCCccchhHHHHHHHHhhh
Confidence 6688888888888887666
No 107
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=89.53 E-value=25 Score=35.50 Aligned_cols=20 Identities=15% Similarity=0.313 Sum_probs=14.2
Q ss_pred ccccccchhHHHhhhhhhcc
Q 044788 39 TSKKLSLLPLIFLIYFEVAG 58 (483)
Q Consensus 39 ~~r~l~~~~~~~~~i~~~iG 58 (483)
.|.+++.++.+++.+++-+|
T Consensus 33 ~kPefS~~sW~aMlf~aG~G 52 (453)
T TIGR00842 33 EKPEFSTLSWLAMLFAAGMG 52 (453)
T ss_pred CCCCCcchHHHHHHHHHhhh
Confidence 35677778888887776656
No 108
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=87.80 E-value=31 Score=34.29 Aligned_cols=36 Identities=3% Similarity=-0.198 Sum_probs=26.1
Q ss_pred HHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 044788 294 AEVAEIIAGKWLKICIEIGACLSIIGLYEAQLSNCA 329 (483)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 329 (483)
....+...|++...++.++.+.+-.+|..+.-++..
T Consensus 283 ~~~L~p~~G~~a~~lF~igLlaAG~sS~it~~~ag~ 318 (390)
T TIGR01197 283 GVLLGCLFSPAAGYIFAVGLLAAGQSSGMVGTYSGQ 318 (390)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 334455678888888888888888888777766544
No 109
>PRK15049 L-asparagine permease; Provisional
Probab=84.67 E-value=52 Score=33.95 Aligned_cols=51 Identities=10% Similarity=0.055 Sum_probs=23.3
Q ss_pred CCCCcccCchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 044788 406 TKRPFRVPMEMLGLIFMCIIPSGFLVYVMVVATKMVCFVSALLTFFGIFLYFF 458 (483)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 458 (483)
.+.|. .|...+...+..++..+...+.....+.. .....++.++..+.|+.
T Consensus 417 f~~~~-~p~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 467 (499)
T PRK15049 417 FKLPG-APFTSWLTLLFLLSVLVLMAFDYPNGTYT-IAALPIIGILLVIGWFG 467 (499)
T ss_pred CcccC-ccHHHHHHHHHHHHHHHHHHHcCcchHHH-HHHHHHHHHHHHHHHHH
Confidence 34444 45555555554455455555543323333 33333444444555544
No 110
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=84.51 E-value=42 Score=32.72 Aligned_cols=99 Identities=17% Similarity=0.141 Sum_probs=53.9
Q ss_pred chhHHHhhhhhhcc-cccCchhhHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-CChHHHhHHHHhCChhHHH
Q 044788 45 LLPLIFLIYFEVAG-GPYGEEPAVGAAGPLFAILGFLIFPFIWSIPEALVTAELATTFPG-NGGYVIWAHHAFGPFWGSL 122 (483)
Q Consensus 45 ~~~~~~~~i~~~iG-g~~~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~l~~~el~~~~p~-~Gg~y~~~~~~~g~~~g~~ 122 (483)
.+-++.--+.++.| |...=|..-..-|+...++ |++.+.++.-. .-=|..+-....+ .-+.-+.+++.+|++.+.+
T Consensus 54 ~~vlfghhf~sIAGaGPI~GPi~aa~~GwlPa~l-WI~~G~if~Ga-VHD~~sl~~SvR~~G~Si~~i~~~~lG~~~~~l 131 (376)
T PF02554_consen 54 KWVLFGHHFASIAGAGPIVGPILAAQFGWLPALL-WIVFGCIFAGA-VHDYGSLMASVRHKGKSIGEIAGKYLGKRAKKL 131 (376)
T ss_pred hHHhhHHHHHHHhccccchHHHHHHHhcchHHHH-HHHHccHHHHH-HHHHHHHhhhhcCCCccHHHHHHHHHHHHHHHH
Confidence 34455555666667 5544444334566652322 44443321221 2222333333333 3456678889999999998
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHH
Q 044788 123 MGSWKFLSGVINLASYPILCIDY 145 (483)
Q Consensus 123 ~g~~~~~~~~~~~~~~~~~~~~~ 145 (483)
..+..++..+...+..+...++.
T Consensus 132 f~~f~~~~lilV~avF~~v~a~~ 154 (376)
T PF02554_consen 132 FLIFIFFLLILVIAVFADVVANT 154 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887777776666655544443
No 111
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=83.92 E-value=54 Score=33.57 Aligned_cols=152 Identities=16% Similarity=0.161 Sum_probs=70.0
Q ss_pred ccccccccchhHHHhhhhhhcc-cc--cCchhhH--hh----hCh--------H--------HHHHHHHHHHHHHHHHHH
Q 044788 37 TVTSKKLSLLPLIFLIYFEVAG-GP--YGEEPAV--GA----AGP--------L--------FAILGFLIFPFIWSIPEA 91 (483)
Q Consensus 37 ~~~~r~l~~~~~~~~~i~~~iG-g~--~~~~~~~--~~----~G~--------~--------~~i~~~~~~~~~~~~~~~ 91 (483)
++.+-+.+.++.+++-++.=+| |. ++...-+ +. ++. . ..+.+|.+-++. +
T Consensus 82 ~~~~PEfs~~SW~aMLFaAGmGigl~fwgvaEp~~~y~~pp~~~~~~t~~A~~~Al~~tffHWG~~~WaiY~lv-----a 156 (537)
T COG1292 82 DDEKPEFSTLSWLAMLFAAGMGIGLLFWGVAEPVYYYATPPPGAEPNTTEAAEQALAYTFFHWGLHAWAIYALV-----A 156 (537)
T ss_pred CCCCCCcchhHHHHHHHHcccCceeeEeechhhHHHhcCCCCCCCCCCHHHHHHHHHHHHHhhchHHHHHHHHH-----H
Confidence 3455677788888887776555 33 2221111 11 110 0 123445554443 5
Q ss_pred HHHHHhhccCCCCChHHHhHHHHhCC----hhHHHHHHHHHHHhhhhHHHHHHHHHH----HHHHhccccccchHHHHHH
Q 044788 92 LVTAELATTFPGNGGYVIWAHHAFGP----FWGSLMGSWKFLSGVINLASYPILCID----YLKLVFPIFASGFSHYLAI 163 (483)
Q Consensus 92 l~~~el~~~~p~~Gg~y~~~~~~~g~----~~g~~~g~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~~~~~~ 163 (483)
+.++.+.-+.-..+-...-.+-.+|+ .+|..+-.+.+++.+.+.+...-..+. -++.+++-.++.+....+.
T Consensus 157 lalaYf~~rk~~pl~lss~l~Pllg~~~~G~~G~~IDi~aiiaTl~GiATsLG~ga~qi~~Gl~~l~gip~~~~~q~~iI 236 (537)
T COG1292 157 LALAYFHYRKGLPLLLSSALYPLLGERIKGPIGHAVDILAIIATLFGIATSLGLGALQLTAGLSYLFGIPNSFAVQAIII 236 (537)
T ss_pred HHhheeeEecCCCchhhhhhhhhhcccccCccchhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 55555555544433333333333333 456666666666666655554443333 3333333222333333333
Q ss_pred HHHHHHHHHHHh----hchhHHHHHHHHHHHHHH
Q 044788 164 FVVTLVLSFLNY----TGLAIVGYTAVTLGVVSL 193 (483)
Q Consensus 164 ~~~~~~~~~i~~----~g~~~~~~~~~~~~~~~i 193 (483)
.++.+.++.-.. +|+|..++++..+....+
T Consensus 237 ~vi~~~~~~S~~sGv~KGIr~LS~~n~~la~~ll 270 (537)
T COG1292 237 AVITALFTISVWSGLDKGIRVLSNINMVLAFLLL 270 (537)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333 466666666655544433
No 112
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]
Probab=82.06 E-value=69 Score=33.42 Aligned_cols=285 Identities=11% Similarity=0.046 Sum_probs=131.3
Q ss_pred cccccchhHHHhhhhhhccc--ccCchhhHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-CChHHHhHHHHhC
Q 044788 40 SKKLSLLPLIFLIYFEVAGG--PYGEEPAVGAAGPLFAILGFLIFPFIWSIPEALVTAELATTFPG-NGGYVIWAHHAFG 116 (483)
Q Consensus 40 ~r~l~~~~~~~~~i~~~iGg--~~~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~l~~~el~~~~p~-~Gg~y~~~~~~~g 116 (483)
.|++.++-..+--+.+-+|+ ..++|...+..|-.... +....++.....++.+ +=-.+.. -...|+|.++-|+
T Consensus 44 gr~m~~~Pv~~SL~aS~~s~~~~~gl~~e~~~~G~~~~~--~~~~~l~~~~~~~~~f--~Pvf~~~~v~~~~eYl~~Rf~ 119 (585)
T KOG2349|consen 44 GRSMVWLPVAASLFASNISSVHFLGLPGEGYAYGIQYWF--FEWNALLSVLLLGWIF--IPVFYRLGVTTMYEYLEKRFG 119 (585)
T ss_pred CCcceEEEeehhhhhhhhcceeeecCchHHHHHHHHHHH--HHHHHHHHHHhhheEE--EEEEEecCeeehhHHHHHHhc
Confidence 46777776666655555563 46788877776653332 2222222112122211 1111111 2578999999999
Q ss_pred ChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHH
Q 044788 117 PFWGSLMGSWKFLSGVINLASYPILCIDYLKLVFPIFASGFSHYLAIFVVTLVLSFLNYTGLAIVGYTAVTLGVVSLIPF 196 (483)
Q Consensus 117 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~~ 196 (483)
+....+....+.+..+.........-+..++...+.. .. ....+....+.....+-|+|..-+.-.+=+.+++...
T Consensus 120 ~~~r~l~~l~f~l~~~~~l~v~~y~pal~~~qvtg~~---~~-l~~~~~~~ic~~YT~~GGlkaVi~TDv~Q~~iml~~~ 195 (585)
T KOG2349|consen 120 GRVRYLATLSFILMIFLYLPVDMYAPALAINQVTGIN---LY-LIVVILGLICVFYTALGGLKAVIWTDVVQTVIMLGGV 195 (585)
T ss_pred ccchhhHHHHHHHHHHhheeeeEeehHHHHHHHhccC---ce-eehHHHHHHHHHHHHhcCeeEEEEhhHHHHHHHHHHH
Confidence 8855555555555544444444444444444443311 11 1111111222233334466654444333344444444
Q ss_pred HHHHHHHhccc-----------ccc--ccc-ccCCC--CCCCchHHHHHH---HHHHhcchHhhhhhhhhccC-cCcchH
Q 044788 197 LFLTVIAIPKI-----------DSI--RWI-SLGQN--GVPKNWRLFFNT---LFWNLNFWDNASTLAGEVEQ-PQRTFP 256 (483)
Q Consensus 197 ~~~~i~~~~~~-----------~~~--~~~-~~~~~--~~~~~~~~~~~~---~~~a~~G~e~~~~~~~E~k~-p~r~~p 256 (483)
....+.+..+. +.+ ++. .+..+ .-..-|. .+.+ ....+.|.+... +-.-+.- ..|+..
T Consensus 196 ~~v~i~gt~~vGG~~~V~e~a~~~gr~~~~~~~~~dp~vr~t~W~-~~~Gg~~~~l~~~~vnQ~~-VQR~lsl~slk~ak 273 (585)
T KOG2349|consen 196 LAVMIKGTMKVGGLGRVLEKAFDAGRVNFVAEFLRDPTVRHTPWS-LLFGGTIMWLSYYGVNQLI-VQRYLSLPSLKHAK 273 (585)
T ss_pred HHHhheeehhcCcccceeeecccCCceeecccccCCCcccccchh-HhcCCcHHHHHHHhhhHHH-HhHHhccccHHHhh
Confidence 44444333211 111 111 11111 0122333 3322 122344444321 1111211 236666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc-------C--CCCCCccccHHHHHHHHHcc--hHHHHHHHHHHHHHHHHHHHHHh
Q 044788 257 KALFSAGLLTCVAYLLPLLAATGAI-------P--LDQQNWVDGYFAEVAEIIAG--KWLKICIEIGACLSIIGLYEAQL 325 (483)
Q Consensus 257 ~a~~~~~~~~~~~y~l~~~~~~~~~-------~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 325 (483)
++++.......+...+......... | .......|........+..+ |...-++..++.-+.++++.+.+
T Consensus 274 ~~~~~~~~~~~l~~~~~~~~G~i~~~~Y~~Cdpl~~g~v~~~D~~~P~fV~d~~~~~pGl~GLfia~vfsA~LSsLSS~~ 353 (585)
T KOG2349|consen 274 PSLLLFGYGVLLIMFIMVFVGMIIYALYTDCDPLCGGLVGCPDQLLPLFVMDLMGHLPGLRGLFIAVVFSAALSSLSSIF 353 (585)
T ss_pred hhhhhhhhHHHHHHHhhcccceeEeeecccCCcccccccCCccccccHHHHHhcCCCCCccchhHHHHHHHHHHHHHHhh
Confidence 6666665555554444433322111 1 11234445555566666666 66667777777777888888778
Q ss_pred hhhhHHHHH
Q 044788 326 SNCAYQILG 334 (483)
Q Consensus 326 ~~~sR~l~~ 334 (483)
++.+-+.+.
T Consensus 354 NS~s~v~~e 362 (585)
T KOG2349|consen 354 NSLSTVFLE 362 (585)
T ss_pred hhHHHHHHH
Confidence 777765543
No 113
>COG4146 Predicted symporter [General function prediction only]
Probab=79.95 E-value=62 Score=31.51 Aligned_cols=224 Identities=14% Similarity=0.048 Sum_probs=107.9
Q ss_pred HHHhHHHHhCChhHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHhcccc---c-cc---hHHHHHHHHHHHHHHHHHhhch
Q 044788 107 YVIWAHHAFGPFWGSLMGSWKFLSGVI-NLASYPILCIDYLKLVFPIF---A-SG---FSHYLAIFVVTLVLSFLNYTGL 178 (483)
Q Consensus 107 ~y~~~~~~~g~~~g~~~g~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~---~-~~---~~~~~~~~~~~~~~~~i~~~g~ 178 (483)
.-++.++-|.+..-.++..++.+.|.. ..+....+.+-.+++.|+.. + ++ .+...+++.+ ..+....+-|.
T Consensus 105 IPdFlE~RfD~~TR~Iis~lFLi~y~~~flPtvLYsGAla~nsiF~l~~v~~IS~g~~i~~~viaiG~-~g~~Yai~GGL 183 (571)
T COG4146 105 IPDFLEERFDKTTRMIISFLFLIAYGVCFLPTVLYSGALALNSIFHLGEVLQISHGAAIWLLVIAIGL-AGILYAIIGGL 183 (571)
T ss_pred chHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHhhhhchHhhhCcCcchHHHHHHHHHHH-HHHHHHHHcch
Confidence 457888889988888888888777643 34445555556666666421 1 11 1111222222 22233344577
Q ss_pred hHHHH---HHHHHHHHHHHHHHHHHHHHhcc------------cccccccccCCCCCCCchHHHHHHHH------HHhc-
Q 044788 179 AIVGY---TAVTLGVVSLIPFLFLTVIAIPK------------IDSIRWISLGQNGVPKNWRLFFNTLF------WNLN- 236 (483)
Q Consensus 179 ~~~~~---~~~~~~~~~i~~~~~~~i~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~------~a~~- 236 (483)
|..+. +|.+..++.-..+=++.+..+.+ .|++.+...+.+..+-.|...+.+.. |+-.
T Consensus 184 kA~AvsDtiNgigLviGgLlvPifaLi~lG~Gsfa~G~~~itt~h~eKlNaIGg~~d~vPw~a~fTGll~vN~FYWcTNQ 263 (571)
T COG4146 184 KAMAVSDTINGIGLVIGGLLVPIFALIALGKGSFAQGIEQITTVHAEKLNAIGGPTDPVPWGAAFTGLLLVNTFYWCTNQ 263 (571)
T ss_pred hheeeccccchhhHhhhhHHHHHHHHHhhcCccHhhchhhhhccCHHHhcccCCCCCCCcHHHHHHhHhhhheeeeeccH
Confidence 76553 44443333222222222222222 22333333333333556666665532 1111
Q ss_pred chHhhhhhhhhccCcCcchHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCccccHHHHHHHHHcchHHHHHHHHHHHHH
Q 044788 237 FWDNASTLAGEVEQPQRTFPKALFSAGLLTCVAYLLPLLAATGAIPLDQQNWVDGYFAEVAEIIAGKWLKICIEIGACLS 316 (483)
Q Consensus 237 G~e~~~~~~~E~k~p~r~~p~a~~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (483)
|.-.=+-.+++.++-+|-+-.+.+.-+.-..++-+... ......++ +...|.....+..+..+-.+.-++....+-+
T Consensus 264 ~IvQRtLaak~LaeGQKG~Llaa~fk~~~pl~LvLPGl-iafhlygd--L~~aDmaYP~LVn~VlPv~l~GFf~AvLFGA 340 (571)
T COG4146 264 GIVQRTLAAKSLAEGQKGALLAAVFKMLDPLVLVLPGL-IAFHLYGD--LPKADMAYPTLVNNVLPVPLVGFFGAVLFGA 340 (571)
T ss_pred HHHHHHHhhhhhhccccccHHHHHHHHhchHHhhhhHH-HHHHHhcc--CCccccccHHHHHhccchHHHHHHHHHHHHH
Confidence 22222223444555555544444333333333333222 22222222 4344444556666666666777777777777
Q ss_pred HHHHHHHHhhhhhHHHHHh
Q 044788 317 IIGLYEAQLSNCAYQILGM 335 (483)
Q Consensus 317 ~~~~~~~~~~~~sR~l~~~ 335 (483)
.+++.|+..++++ .+|+|
T Consensus 341 ilStFN~fLNSa~-Tlf~~ 358 (571)
T COG4146 341 ILSTFNGFLNSAS-TLFSM 358 (571)
T ss_pred HHHHHHHHhhhhh-HHhhh
Confidence 7888888777655 44444
No 114
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=76.77 E-value=37 Score=29.27 Aligned_cols=12 Identities=17% Similarity=0.235 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHH
Q 044788 358 GIFISTLIALTV 369 (483)
Q Consensus 358 ai~~~~i~~~~~ 369 (483)
++++.++++++-
T Consensus 101 sLl~lg~~aLls 112 (226)
T COG4858 101 SLLFLGAMALLS 112 (226)
T ss_pred cHHHHHHHHHHH
Confidence 455555555543
No 115
>PF14256 YwiC: YwiC-like protein
Probab=69.40 E-value=61 Score=26.46 Aligned_cols=24 Identities=21% Similarity=0.519 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Q 044788 380 CVNFLYSLGMLLEFASFLWLRKKL 403 (483)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~r~~~ 403 (483)
..-...+..|.........+|.|+
T Consensus 29 ~L~~aw~~~yl~~~p~~~~~k~r~ 52 (129)
T PF14256_consen 29 PLLLAWLFGYLAFYPFLLWLKQRR 52 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc
Confidence 345566667777766665555544
No 116
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=64.65 E-value=1.5e+02 Score=29.75 Aligned_cols=75 Identities=23% Similarity=0.320 Sum_probs=55.3
Q ss_pred HhHHHHhCChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhchhHHHHHHHH
Q 044788 109 IWAHHAFGPFWGSLMGSWKFLSGVINLASYPILCIDYLKLVFPIFASGFSHYLAIFVVTLVLSFLNYTGLAIVGYTAVT 187 (483)
Q Consensus 109 ~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~ 187 (483)
..+++.+|+.-..+.+.+..++...++.-...++++|.+..++.. ....+.+++.+....+.-.|.+..-++..-
T Consensus 265 ~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~ki----sY~~~v~i~~i~S~~ian~Gl~~Ii~~s~P 339 (427)
T PF05525_consen 265 QIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSELFPKI----SYKVWVIIFTIFSFIIANLGLDQIIKISVP 339 (427)
T ss_pred HHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----ChHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 466778999999999999999988888888889999999998832 223333344455566666787776666543
No 117
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=64.54 E-value=13 Score=26.02 Aligned_cols=21 Identities=14% Similarity=0.289 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcc
Q 044788 445 SALLTFFGIFLYFFIKLCRSN 465 (483)
Q Consensus 445 ~~~~~~~g~~~~~~~~~~~~~ 465 (483)
+..+.++|+++|.++.+++..
T Consensus 9 ~ICVaii~lIlY~iYnr~~~~ 29 (68)
T PF05961_consen 9 IICVAIIGLILYGIYNRKKTT 29 (68)
T ss_pred HHHHHHHHHHHHHHHhccccc
Confidence 444567888999988776644
No 118
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=64.30 E-value=9.2 Score=30.77 Aligned_cols=12 Identities=17% Similarity=0.282 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHh
Q 044788 452 GIFLYFFIKLCR 463 (483)
Q Consensus 452 g~~~~~~~~~~~ 463 (483)
.++.|+++|++|
T Consensus 82 lli~y~irR~~K 93 (122)
T PF01102_consen 82 LLISYCIRRLRK 93 (122)
T ss_dssp HHHHHHHHHHS-
T ss_pred HHHHHHHHHHhc
Confidence 345555544433
No 119
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=63.95 E-value=79 Score=28.16 Aligned_cols=10 Identities=10% Similarity=0.464 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 044788 450 FFGIFLYFFI 459 (483)
Q Consensus 450 ~~g~~~~~~~ 459 (483)
++|.+.+..+
T Consensus 185 iig~i~~~~~ 194 (206)
T PF06570_consen 185 IIGVIAFALR 194 (206)
T ss_pred HHHHHHHHHH
Confidence 3444444333
No 120
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=63.47 E-value=1.7e+02 Score=29.40 Aligned_cols=46 Identities=11% Similarity=0.242 Sum_probs=25.9
Q ss_pred HHHHHHHHHhhhhhHHHHHhhhcCCCchhhhccCCCCCCCHHHHHHHHHHHHHHH
Q 044788 316 SIIGLYEAQLSNCAYQILGMTNLGLLPKVFGSRSSWFHTPWVGIFISTLIALTVS 370 (483)
Q Consensus 316 ~~~~~~~~~~~~~sR~l~~~a~dg~lP~~~~~~~~~~~~P~~ai~~~~i~~~~~~ 370 (483)
+.+++.....++.|+.+..+=.|+. |+|.-.| ..++++.++.+++.
T Consensus 67 G~i~s~f~i~YG~sKf~~G~~sDr~--------npr~fm~-~gLilsai~nil~G 112 (448)
T COG2271 67 GILGSAFSITYGVSKFVMGVLSDRS--------NPRYFMA-FGLILSAIVNILFG 112 (448)
T ss_pred HHHHHHHHHHHHHHHHHhhhhcccC--------CCceeeh-HHHHHHHHHHHHHh
Confidence 3445555566788888777766654 4433233 34555555555444
No 121
>PRK11281 hypothetical protein; Provisional
Probab=61.63 E-value=3e+02 Score=31.64 Aligned_cols=30 Identities=27% Similarity=0.232 Sum_probs=20.2
Q ss_pred cCcCcchHHHHHHHHHHHHHHHHHHHHHHh
Q 044788 249 EQPQRTFPKALFSAGLLTCVAYLLPLLAAT 278 (483)
Q Consensus 249 k~p~r~~p~a~~~~~~~~~~~y~l~~~~~~ 278 (483)
+|.....|++++++++.+....++...+.+
T Consensus 536 ~D~~~~T~~al~~t~l~alp~~l~~~~~g~ 565 (1113)
T PRK11281 536 RDSQLHTPKAILITLLLALPVTLIFLAVGL 565 (1113)
T ss_pred cCcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567899999999877666655544443
No 122
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=60.78 E-value=1.8e+02 Score=28.80 Aligned_cols=75 Identities=20% Similarity=0.310 Sum_probs=53.1
Q ss_pred HhHHHHhCChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhchhHHHHHHHH
Q 044788 109 IWAHHAFGPFWGSLMGSWKFLSGVINLASYPILCIDYLKLVFPIFASGFSHYLAIFVVTLVLSFLNYTGLAIVGYTAVT 187 (483)
Q Consensus 109 ~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~ 187 (483)
+.+++.+|+.-+.+.+-...++...+.......+++|+....+. .+...+.+...+....+...|.+..-++...
T Consensus 259 ~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~k----~~y~~~v~~~~l~s~~ia~~Gl~~Ii~~~~P 333 (378)
T TIGR00796 259 AYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHKLVPK----LSYKTWVIVFTLFSFIVANLGLTQIISISIP 333 (378)
T ss_pred HHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CCHHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 67888999999999999999988888888888899999988774 2233333333444444555677766665433
No 123
>PHA03049 IMV membrane protein; Provisional
Probab=59.45 E-value=15 Score=25.51 Aligned_cols=22 Identities=9% Similarity=0.193 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHhccc
Q 044788 445 SALLTFFGIFLYFFIKLCRSNK 466 (483)
Q Consensus 445 ~~~~~~~g~~~~~~~~~~~~~~ 466 (483)
...+.++|+++|.++++++...
T Consensus 9 iICVaIi~lIvYgiYnkk~~~q 30 (68)
T PHA03049 9 IICVVIIGLIVYGIYNKKTTTS 30 (68)
T ss_pred HHHHHHHHHHHHHHHhcccccC
Confidence 3445578889999987766543
No 124
>PTZ00206 amino acid transporter; Provisional
Probab=59.39 E-value=1.4e+02 Score=30.44 Aligned_cols=56 Identities=11% Similarity=0.122 Sum_probs=44.1
Q ss_pred cHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCCCchhhh
Q 044788 291 GYFAEVAEIIAGKWLKICIEIGACLSIIGLYEAQLSNCAYQILGMTNLGLLPKVFG 346 (483)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~~~ 346 (483)
....++.+...|++...++.+...+..++...+++......+...-.+...|+++.
T Consensus 121 ~sY~~la~~~~G~~g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~ 176 (467)
T PTZ00206 121 RTYEGVARVLLGPWGSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLK 176 (467)
T ss_pred CCHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhh
Confidence 46888999888999999999999999999999998888877766654433444443
No 125
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=59.06 E-value=1.8e+02 Score=28.29 Aligned_cols=38 Identities=24% Similarity=0.201 Sum_probs=25.3
Q ss_pred hhhhhhccCcCc----chHHHHHHHHHHHHHHHHHHHHHHhh
Q 044788 242 STLAGEVEQPQR----TFPKALFSAGLLTCVAYLLPLLAATG 279 (483)
Q Consensus 242 ~~~~~E~k~p~r----~~p~a~~~~~~~~~~~y~l~~~~~~~ 279 (483)
...++++.++++ +-|+++.++++.+...-++...+...
T Consensus 29 ~~~~~~ig~~~~D~~~~T~~al~~tll~alp~pl~~~~~g~~ 70 (340)
T PF12794_consen 29 ERIAKRIGKVRQDSFSHTPRALLLTLLLALPLPLLLLAIGYL 70 (340)
T ss_pred HHHHHHcCCccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555544 48999999998777766666555444
No 126
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=56.64 E-value=1.3e+02 Score=25.82 Aligned_cols=10 Identities=50% Similarity=0.823 Sum_probs=3.9
Q ss_pred hCChhHHHHH
Q 044788 115 FGPFWGSLMG 124 (483)
Q Consensus 115 ~g~~~g~~~g 124 (483)
-|+..|.+-|
T Consensus 96 ~g~W~Gi~YG 105 (173)
T PF11085_consen 96 KGPWPGILYG 105 (173)
T ss_pred cccchHHHHH
Confidence 3343444333
No 127
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=52.08 E-value=2.4e+02 Score=27.66 Aligned_cols=20 Identities=20% Similarity=0.214 Sum_probs=12.4
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q 044788 351 WFHTPWVGIFISTLIALTVS 370 (483)
Q Consensus 351 ~~~~P~~ai~~~~i~~~~~~ 370 (483)
|...-....+...+++....
T Consensus 308 ~~~~~~~~~~~pl~~a~~~p 327 (381)
T TIGR00837 308 RFKTGLLTFLPPLVFALFYP 327 (381)
T ss_pred CchhhhhhHHhHHHHHHHhh
Confidence 35666666666666666654
No 128
>PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae. AbgT expression is apparently cryptic in wild type cells, but when present on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs []. p-Aminobenzoate is a constituent of, and a precursor for, the biosynthesis of folic acid. It is not currently known if AbgT is naturally involved in transporting p-aminobenzoyl-glutamate, or if it only becomes involved when under altered regulation. MtrF is an inner membrane protein which, together with the MtrCDE efflux pump, is required for high-level resistance to hydrophobic antimicrobial agents in N. gonorrhoeae []. Its role in this process is not known, but it has been suggested that it may be a component of the efflux pump which is dispensible for basal activity, but required for high-level activity [].
Probab=48.08 E-value=2.8e+02 Score=28.56 Aligned_cols=93 Identities=11% Similarity=0.030 Sum_probs=60.3
Q ss_pred HHHHHHHHHHhhccCCCCChHHHhHHHHhCChhHHHHHHH------HHHHhhhhHHHHHHHHHHHHHHhccccccchHHH
Q 044788 87 SIPEALVTAELATTFPGNGGYVIWAHHAFGPFWGSLMGSW------KFLSGVINLASYPILCIDYLKLVFPIFASGFSHY 160 (483)
Q Consensus 87 ~~~~~l~~~el~~~~p~~Gg~y~~~~~~~g~~~g~~~g~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 160 (483)
.+..+..|+..+.++.+.....+...+.+....++++-.. .++.+-=.....+...++.++.. + .+..
T Consensus 307 F~i~GivYG~~sG~iks~~Dv~~~M~~~m~~m~~yiVL~F~aaQFia~F~~Snlg~i~Av~GA~~L~~~-~-----~~~~ 380 (502)
T PF03806_consen 307 FLIPGIVYGIASGTIKSDKDVVKMMSKGMKSMAPYIVLAFFAAQFIAYFNWSNLGTILAVKGAEFLKSL-G-----LPGI 380 (502)
T ss_pred HHHHHHHHhhhhceecCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhc-C-----CCcH
Confidence 5667999999999999998999999988876655543322 22222223445566666777655 1 2233
Q ss_pred HHHHHHHHHHHHHHhhchhHHHHHH
Q 044788 161 LAIFVVTLVLSFLNYTGLAIVGYTA 185 (483)
Q Consensus 161 ~~~~~~~~~~~~i~~~g~~~~~~~~ 185 (483)
...+.++++..++|++=...++|-.
T Consensus 381 ~l~i~fill~a~iNLfi~S~SaKWa 405 (502)
T PF03806_consen 381 PLIIGFILLTAFINLFIGSASAKWA 405 (502)
T ss_pred HHHHHHHHHHHHHHHhhhcchhhHH
Confidence 4455566777888887655555544
No 129
>KOG3660 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=45.25 E-value=4.1e+02 Score=28.35 Aligned_cols=65 Identities=18% Similarity=0.335 Sum_probs=40.0
Q ss_pred cchhHHHhhhhhhcc-c-ccCchhhHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhh-ccCCCCChHHHh
Q 044788 44 SLLPLIFLIYFEVAG-G-PYGEEPAVGAAGPLFAILGFLIFPFIWSIPEALVTAELA-TTFPGNGGYVIW 110 (483)
Q Consensus 44 ~~~~~~~~~i~~~iG-g-~~~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~l~~~el~-~~~p~~Gg~y~~ 110 (483)
+..+.+...+|..+| | +.-.|....+-|..+.++.+++..+++.+|.-+ .|++ ..+-+.|+.-.|
T Consensus 39 ~~~efllS~ig~~vGlgNvwRFP~~~y~nGGgaFLIpY~i~l~l~GlP~~~--LE~slGQf~~~g~v~~w 106 (629)
T KOG3660|consen 39 SKIEFLLSCLGYAVGLGNVWRFPYLAYKNGGGAFLIPYLIVLFLFGLPLFF--LEMSLGQFTSQGPVSVW 106 (629)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHhcCCchHHHHHHHHHHHhcchHHH--HHHHHhhhhcCChHHHH
Confidence 567777888888777 3 345677777744446666677766655666554 4543 234455555555
No 130
>KOG1278 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.70 E-value=3.8e+02 Score=27.82 Aligned_cols=37 Identities=11% Similarity=0.057 Sum_probs=23.0
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Q 044788 176 TGLAIVGYTAVTLGVVSLIPFLFLTVIAIPKIDSIRW 212 (483)
Q Consensus 176 ~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~ 212 (483)
.-+++.+-+|..+.+..+..++.++..-..+.|-++.
T Consensus 262 ~qIhWfSIiNSlvIVlfLSgiv~mI~lRtl~rDiarY 298 (628)
T KOG1278|consen 262 VQIHWFSIINSLVIVLFLSGIVAMIMLRTLYRDIARY 298 (628)
T ss_pred CceEEEehhhhHHHHHHHHHHHHHHHHHHHHHhHhhh
Confidence 3456777778777777776666666555444444443
No 131
>PF14007 YtpI: YtpI-like protein
Probab=43.73 E-value=1.4e+02 Score=22.55 Aligned_cols=23 Identities=22% Similarity=0.453 Sum_probs=15.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHH
Q 044788 436 VATKMVCFVSALLTFFGIFLYFF 458 (483)
Q Consensus 436 ~~~~~~~~~~~~~~~~g~~~~~~ 458 (483)
..++.+.+++.+.+++|+.-.+.
T Consensus 54 ~~st~~~iV~~ifl~lG~~n~~~ 76 (89)
T PF14007_consen 54 FGSTVRLIVGAIFLVLGLFNLFA 76 (89)
T ss_pred cccHHHHHHHHHHHHHhHHHHHH
Confidence 45677778888888887654433
No 132
>PRK12489 anaerobic C4-dicarboxylate transporter; Reviewed
Probab=41.33 E-value=3.4e+02 Score=27.51 Aligned_cols=18 Identities=11% Similarity=0.289 Sum_probs=9.8
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 044788 353 HTPWVGIFISTLIALTVS 370 (483)
Q Consensus 353 ~~P~~ai~~~~i~~~~~~ 370 (483)
+.|.+..++...++.+..
T Consensus 83 k~pk~i~llap~vt~l~a 100 (443)
T PRK12489 83 RNPKYITILAPFVTYTLT 100 (443)
T ss_pred cChhHHHHHHHHHHHHHH
Confidence 356666665555544443
No 133
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=40.96 E-value=4.3e+02 Score=27.40 Aligned_cols=79 Identities=19% Similarity=0.066 Sum_probs=46.5
Q ss_pred hChHHHHH----HHHHHHHHHHHHHHHHHH-HhhccCCCCCh--HHHhHHHHhCChhHHHHHHHHHHHhhhhHHHHHHHH
Q 044788 70 AGPLFAIL----GFLIFPFIWSIPEALVTA-ELATTFPGNGG--YVIWAHHAFGPFWGSLMGSWKFLSGVINLASYPILC 142 (483)
Q Consensus 70 ~G~~~~i~----~~~~~~~~~~~~~~l~~~-el~~~~p~~Gg--~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~ 142 (483)
..|.+++. +++++.+. .+..+++.. .+.+.+-+..| .-.+..+.+|++.+....-...+...+.........
T Consensus 284 ~aPrgIi~s~~i~~i~gw~~-~I~i~~~i~~D~~~v~ns~~g~p~~~i~~~~lg~k~~v~~~~l~ii~~f~~gi~s~~a~ 362 (550)
T KOG1289|consen 284 AAPRGIISSIAIGFILGWII-IIGIAYTIPDDLDAVLNSSLGQPIVQIYYQALGKKGAVFLLSLIIIALFFMGISSLTAS 362 (550)
T ss_pred hccHHHHHHHHHHHHHHHHH-HHHHHHhccchHHHHhcCCCCChHHHHHHHhcCCCceEehhHHHHHHHHHhhHHHHHHH
Confidence 55544433 34443333 666777777 66666665422 335778889998886555555555555555555555
Q ss_pred HHHHHHh
Q 044788 143 IDYLKLV 149 (483)
Q Consensus 143 ~~~l~~~ 149 (483)
+..+..+
T Consensus 363 SR~v~af 369 (550)
T KOG1289|consen 363 SRLVYAF 369 (550)
T ss_pred HHHHhhh
Confidence 5555554
No 134
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=38.54 E-value=76 Score=29.54 Aligned_cols=24 Identities=29% Similarity=0.559 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHhcccccc
Q 044788 446 ALLTFFGIFLYFFIKLCRSNKWLE 469 (483)
Q Consensus 446 ~~~~~~g~~~~~~~~~~~~~~~~~ 469 (483)
+++.++.+++|.|.+|+|++.|+.
T Consensus 269 lil~vvliiLYiWlyrrRK~swkh 292 (295)
T TIGR01478 269 IILTVVLIILYIWLYRRRKKSWKH 292 (295)
T ss_pred HHHHHHHHHHHHHHHHhhcccccc
Confidence 344445556666666666666643
No 135
>COG4025 Predicted membrane protein [Function unknown]
Probab=36.58 E-value=3.3e+02 Score=24.71 Aligned_cols=16 Identities=6% Similarity=0.040 Sum_probs=12.7
Q ss_pred hhhHHHHHhhhcCCCc
Q 044788 327 NCAYQILGMTNLGLLP 342 (483)
Q Consensus 327 ~~sR~l~~~a~dg~lP 342 (483)
..-|-...+.||+.+|
T Consensus 55 ~~ve~v~e~~re~~i~ 70 (284)
T COG4025 55 SKVEKVMEKVREFQIP 70 (284)
T ss_pred HHHHHHHHHHhcCCCc
Confidence 4557788899999886
No 136
>PTZ00370 STEVOR; Provisional
Probab=35.34 E-value=82 Score=29.40 Aligned_cols=24 Identities=29% Similarity=0.569 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHhcccccc
Q 044788 446 ALLTFFGIFLYFFIKLCRSNKWLE 469 (483)
Q Consensus 446 ~~~~~~g~~~~~~~~~~~~~~~~~ 469 (483)
+++.++.+++|.|.+|+|++.|+.
T Consensus 265 lil~vvliilYiwlyrrRK~swkh 288 (296)
T PTZ00370 265 LILAVVLIILYIWLYRRRKNSWKH 288 (296)
T ss_pred HHHHHHHHHHHHHHHHhhcchhHH
Confidence 334444556666666666666643
No 137
>PF15050 SCIMP: SCIMP protein
Probab=35.05 E-value=55 Score=25.93 Aligned_cols=18 Identities=17% Similarity=0.361 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 044788 447 LLTFFGIFLYFFIKLCRS 464 (483)
Q Consensus 447 ~~~~~g~~~~~~~~~~~~ 464 (483)
+-+.+|+++|.++|+..|
T Consensus 19 vS~~lglIlyCvcR~~lR 36 (133)
T PF15050_consen 19 VSVVLGLILYCVCRWQLR 36 (133)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344678888988876654
No 138
>PRK00968 tetrahydromethanopterin S-methyltransferase subunit D; Provisional
Probab=33.49 E-value=59 Score=28.74 Aligned_cols=31 Identities=16% Similarity=0.409 Sum_probs=23.4
Q ss_pred hhhccCcC-cchHHHHHHHHHHHHHHHHHHHH
Q 044788 245 AGEVEQPQ-RTFPKALFSAGLLTCVAYLLPLL 275 (483)
Q Consensus 245 ~~E~k~p~-r~~p~a~~~~~~~~~~~y~l~~~ 275 (483)
.|-..||+ |++||+++.+.+...++-++...
T Consensus 204 IEGfHDPKFKr~p~~vias~vaS~~~gii~v~ 235 (240)
T PRK00968 204 IEGFHDPKFKRWPRAVIASFVASLVCGIVAVL 235 (240)
T ss_pred eecCCCcccccchHHHHHHHHHHHHHHHHHHH
Confidence 45567888 89999999998877766555443
No 139
>PRK10263 DNA translocase FtsK; Provisional
Probab=33.21 E-value=8.6e+02 Score=28.55 Aligned_cols=17 Identities=12% Similarity=0.298 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHhhc
Q 044788 264 LLTCVAYLLPLLAATGA 280 (483)
Q Consensus 264 ~~~~~~y~l~~~~~~~~ 280 (483)
+++..+|++++++.+..
T Consensus 30 LlllAlfL~lALiSYsP 46 (1355)
T PRK10263 30 IVLFAVWLMAALLSFNP 46 (1355)
T ss_pred HHHHHHHHHHHHHhCCc
Confidence 34444555555544443
No 140
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=33.04 E-value=93 Score=24.80 Aligned_cols=22 Identities=14% Similarity=0.235 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 044788 443 FVSALLTFFGIFLYFFIKLCRS 464 (483)
Q Consensus 443 ~~~~~~~~~g~~~~~~~~~~~~ 464 (483)
+.+....+++.+.+...+++.+
T Consensus 77 iv~~~~l~la~i~~~~~~~~l~ 98 (121)
T PF07332_consen 77 IVAGLYLLLALILLLIGRRRLR 98 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4444555555555544444433
No 141
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=32.66 E-value=5.4e+02 Score=26.06 Aligned_cols=74 Identities=16% Similarity=0.303 Sum_probs=55.4
Q ss_pred HhHHHHhCChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhchhHHHHHHHH
Q 044788 109 IWAHHAFGPFWGSLMGSWKFLSGVINLASYPILCIDYLKLVFPIFASGFSHYLAIFVVTLVLSFLNYTGLAIVGYTAVT 187 (483)
Q Consensus 109 ~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~ 187 (483)
.++.+.+|+....+.+...+++...+......++++++...++ .....+.+++.++...+...|.+..-++..-
T Consensus 269 ~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~-----isY~~~v~i~~l~S~~lSn~G~~~II~~s~P 342 (439)
T PRK15433 269 AYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVP-----LSYRTLVFILGGFSMVVSNLGLSQLIQISVP 342 (439)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----CcHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4677889999999999999999998888899999999998876 2333444445555666666787766655543
No 142
>PRK09804 putative cryptic C4-dicarboxylate transporter DcuD; Provisional
Probab=31.96 E-value=5.6e+02 Score=26.03 Aligned_cols=32 Identities=6% Similarity=0.193 Sum_probs=20.9
Q ss_pred CCCchhhhccCCCCCCCHHHHHHHHHHHHHHH
Q 044788 339 GLLPKVFGSRSSWFHTPWVGIFISTLIALTVS 370 (483)
Q Consensus 339 g~lP~~~~~~~~~~~~P~~ai~~~~i~~~~~~ 370 (483)
+.+=+...|.=+|-+.|+..+....+++.++.
T Consensus 97 ~~lV~~~~kPL~~ik~pYlll~~~~llg~lls 128 (455)
T PRK09804 97 RAMVSLLSRPLKLIRSPYIILSATYVIGQIMA 128 (455)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 33334455555557789988887777776655
No 143
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=31.25 E-value=4.1e+02 Score=26.42 Aligned_cols=25 Identities=12% Similarity=0.195 Sum_probs=13.1
Q ss_pred hhccCCCCCCCHHHHHHHHHHHHHH
Q 044788 345 FGSRSSWFHTPWVGIFISTLIALTV 369 (483)
Q Consensus 345 ~~~~~~~~~~P~~ai~~~~i~~~~~ 369 (483)
++...+|++.+.+.+.+..+++.+.
T Consensus 57 ~g~~aDr~~~~~~~l~~~~l~~~~~ 81 (400)
T PF03825_consen 57 WGAIADRFGSAKRILALLSLLSALA 81 (400)
T ss_pred HHHHHhHhhhHHHHHHHHHHHHHHH
Confidence 3444444566666665555544443
No 144
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=30.93 E-value=61 Score=30.74 Aligned_cols=19 Identities=11% Similarity=0.522 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 044788 446 ALLTFFGIFLYFFIKLCRS 464 (483)
Q Consensus 446 ~~~~~~g~~~~~~~~~~~~ 464 (483)
++++++.+++|+++|+||+
T Consensus 266 liIVLIMvIIYLILRYRRK 284 (299)
T PF02009_consen 266 LIIVLIMVIIYLILRYRRK 284 (299)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344455667766655443
No 145
>PHA02681 ORF089 virion membrane protein; Provisional
Probab=30.04 E-value=1.5e+02 Score=21.84 Aligned_cols=20 Identities=0% Similarity=0.097 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 044788 444 VSALLTFFGIFLYFFIKLCR 463 (483)
Q Consensus 444 ~~~~~~~~g~~~~~~~~~~~ 463 (483)
+...+.++++++|..|||..
T Consensus 9 ~~V~V~IVclliya~YRR~~ 28 (92)
T PHA02681 9 TVIVISIVCYIVIMMYRRSC 28 (92)
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 34556667788888888774
No 146
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=29.00 E-value=5.4e+02 Score=24.91 Aligned_cols=105 Identities=14% Similarity=0.134 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCCccccHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcC
Q 044788 260 FSAGLLTCVAYLLPLLAATGAIPLDQQNWVDGYFAEVAEIIAGKWLKICIEIGACLSIIGLYEAQLSNCAYQILGMTNLG 339 (483)
Q Consensus 260 ~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg 339 (483)
+.+++++++++.+.....+...-.-+. .-..+..+...+|..+.+.........+++...+..+++-.+.++
T Consensus 39 ~~gIivs~vlf~~~g~vim~ig~~f~a----~~y~~~~~~v~~~~~~ki~d~~iif~lf~~~vVM~AGags~~~e~---- 110 (349)
T COG3949 39 ILGIILSTVLFTLSGAVIMTIGKKFNA----TSYREILKYVSGPKFAKIIDIIIIFFLFSTAVVMLAGAGSLLEEM---- 110 (349)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcc----cchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHH----
Confidence 467778888888877776654322222 224566777888999999999999988988887777766454443
Q ss_pred CCchhhhccCCCCCCCHHH--HHHHHHHHHHHHhcCHHHHHHHHHHH
Q 044788 340 LLPKVFGSRSSWFHTPWVG--IFISTLIALTVSYMDFTNIISCVNFL 384 (483)
Q Consensus 340 ~lP~~~~~~~~~~~~P~~a--i~~~~i~~~~~~~~~~~~l~~~~~~~ 384 (483)
++.|++- +++...+.+...+.+++.+.+..++.
T Consensus 111 ------------~~lP~wiGali~i~~v~i~lfl~~vegi~tvn~iI 145 (349)
T COG3949 111 ------------FGLPYWIGALIIILLVLILLFLGRVEGIITVNGII 145 (349)
T ss_pred ------------hCccHHHHHHHHHHHHHHHHHHhcccceeeeheeH
Confidence 6777654 33333333333344466666555443
No 147
>PF11174 DUF2970: Protein of unknown function (DUF2970); InterPro: IPR021344 This short family is conserved in Proteobacteria. The function is not known.
Probab=28.90 E-value=1.7e+02 Score=19.96 Aligned_cols=25 Identities=8% Similarity=0.209 Sum_probs=19.2
Q ss_pred HHHHHHHHHhcchHhhhhhhhhccC
Q 044788 226 LFFNTLFWNLNFWDNASTLAGEVEQ 250 (483)
Q Consensus 226 ~~~~~~~~a~~G~e~~~~~~~E~k~ 250 (483)
..+.++.|+|.|...-.+.-++.++
T Consensus 3 ~~~~sVl~af~GVqs~~~~e~Df~~ 27 (56)
T PF11174_consen 3 QVVKSVLWAFFGVQSSKNRERDFAQ 27 (56)
T ss_pred HHHHHHHHHHhCcCcchhHHHHHHc
Confidence 4566788999998888877777764
No 148
>PHA02902 putative IMV membrane protein; Provisional
Probab=28.80 E-value=1.4e+02 Score=20.77 Aligned_cols=19 Identities=16% Similarity=0.431 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 044788 445 SALLTFFGIFLYFFIKLCR 463 (483)
Q Consensus 445 ~~~~~~~g~~~~~~~~~~~ 463 (483)
...+.++++++|..+||.|
T Consensus 10 ~v~v~Ivclliya~YrR~k 28 (70)
T PHA02902 10 AVIVIIFCLLIYAAYKRYK 28 (70)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3445567788888888774
No 149
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=28.21 E-value=3.2e+02 Score=22.22 Aligned_cols=17 Identities=12% Similarity=0.085 Sum_probs=6.9
Q ss_pred hHHHHHHHHHHHHHHHH
Q 044788 439 KMVCFVSALLTFFGIFL 455 (483)
Q Consensus 439 ~~~~~~~~~~~~~g~~~ 455 (483)
......+++.+++++.+
T Consensus 97 ~~~~l~~l~~l~~~~~~ 113 (135)
T PF04246_consen 97 LWAILGGLLGLALGFLI 113 (135)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444333
No 150
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=27.74 E-value=3.4e+02 Score=27.63 Aligned_cols=15 Identities=13% Similarity=0.250 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHH
Q 044788 443 FVSALLTFFGIFLYF 457 (483)
Q Consensus 443 ~~~~~~~~~g~~~~~ 457 (483)
++.+.++++|++++.
T Consensus 259 ~lSl~~il~gl~~~~ 273 (460)
T PRK13108 259 FTSTFVFIGAVVYII 273 (460)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445556666665543
No 151
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=27.64 E-value=2.7e+02 Score=25.19 Aligned_cols=23 Identities=9% Similarity=0.026 Sum_probs=15.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 044788 438 TKMVCFVSALLTFFGIFLYFFIK 460 (483)
Q Consensus 438 ~~~~~~~~~~~~~~g~~~~~~~~ 460 (483)
.+.....+-...++++.+|--++
T Consensus 62 ~~i~~lLgPAtVAlAvPLYkq~~ 84 (230)
T COG1346 62 QWINFLLGPATVALAVPLYKQRH 84 (230)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHH
Confidence 45556667777778888875443
No 152
>COG3965 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=27.52 E-value=5e+02 Score=24.09 Aligned_cols=48 Identities=8% Similarity=-0.032 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhh------------hhHHHHHHHHHHHHHHHHHHHHHHHh
Q 044788 416 MLGLIFMCIIPSGFLVYVMVVA------------TKMVCFVSALLTFFGIFLYFFIKLCR 463 (483)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~g~~~~~~~~~~~ 463 (483)
+....+-+.+....++|..+.. .-....+++.....+..+++..+|.+
T Consensus 90 plvL~ing~ll~ll~lyAlinAl~~l~dGGR~v~~~~ai~yt~~s~~~Ca~~~~~~~r~n 149 (314)
T COG3965 90 PLVLAINGTLLALLCLYALINALGSLLDGGREVEPGHAIAYTLVSVTGCAAIAWKLRRLN 149 (314)
T ss_pred hhHhhhccHHHHHHHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3444455555555566655532 12334445555555566666655533
No 153
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=27.02 E-value=3e+02 Score=21.33 Aligned_cols=24 Identities=8% Similarity=-0.186 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 044788 441 VCFVSALLTFFGIFLYFFIKLCRS 464 (483)
Q Consensus 441 ~~~~~~~~~~~g~~~~~~~~~~~~ 464 (483)
.+.+.+.++.++...+-.+++.+|
T Consensus 75 ~~tl~~lllGv~~G~~n~w~wi~r 98 (100)
T TIGR02230 75 SWTLTMLIVGVVIGCLNAWHWVSR 98 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444544555555655555444
No 154
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=26.00 E-value=2.8e+02 Score=25.17 Aligned_cols=27 Identities=11% Similarity=0.101 Sum_probs=16.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044788 438 TKMVCFVSALLTFFGIFLYFFIKLCRS 464 (483)
Q Consensus 438 ~~~~~~~~~~~~~~g~~~~~~~~~~~~ 464 (483)
++.....+-...++++.+|.-++.-||
T Consensus 59 ~~l~~lLgPAtVALAvPLY~~~~~lk~ 85 (226)
T TIGR00659 59 GVINDLLGPAVVALAIPLYKQLPQIKK 85 (226)
T ss_pred HHHHHhhHHHHHHHHHHHHHhHHHHHH
Confidence 344556677778888888865444333
No 155
>TIGR00819 ydaH p-Aminobenzoyl-glutamate transporter family. The p-Aminobenzoyl-glutamate transporter family includes two transporters, the AbgT (YdaH) protein of E. coli and MtrF of Neisseria gonorrhoea. AbgT is apparently cryptic in wild type cells, but when expressed on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs. p-Aminobenzoate is a constituent of and a precursor for the biosynthesis of folic acid.
Probab=25.95 E-value=7.1e+02 Score=25.82 Aligned_cols=94 Identities=11% Similarity=0.004 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhhccCCCCChHHHhHHHHhCChhHH------HHHHHHHHHhhhhHHHHHHHHHHHHHHhccccccchHHH
Q 044788 87 SIPEALVTAELATTFPGNGGYVIWAHHAFGPFWGS------LMGSWKFLSGVINLASYPILCIDYLKLVFPIFASGFSHY 160 (483)
Q Consensus 87 ~~~~~l~~~el~~~~p~~Gg~y~~~~~~~g~~~g~------~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 160 (483)
.+..+..|+..+.++.+.....+...+......++ ..+...++++--.....+...++.+++. ..+..
T Consensus 314 Fli~givyG~~~g~ik~~~di~~~m~~g~~~m~~~~vli~~A~~f~~~f~~s~i~~~ia~~~A~~L~~~------~l~~~ 387 (513)
T TIGR00819 314 FALPGIAYGIATRSIRGEADLPHAMAEPMKELAGFIVIIFFAAQFVAFFNWSNIGKFIAVGGADFLEES------GLAGI 387 (513)
T ss_pred HHHHHHHHHhhcCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhc------CCChH
Confidence 56678889999998877766666666665443322 2333333333333334444444555322 12344
Q ss_pred HHHHHHHHHHHHHHhhchhHHHHHHH
Q 044788 161 LAIFVVTLVLSFLNYTGLAIVGYTAV 186 (483)
Q Consensus 161 ~~~~~~~~~~~~i~~~g~~~~~~~~~ 186 (483)
...+.++++..++|++=...+++...
T Consensus 388 ~~~i~~~l~~~~iNlfI~S~Sgkwal 413 (513)
T TIGR00819 388 PAFIGFALICAFICLFIASASAIWAI 413 (513)
T ss_pred HHHHHHHHHHHHHHheeccHHHHHHH
Confidence 46667778888899887677666553
No 156
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=25.86 E-value=3e+02 Score=25.05 Aligned_cols=26 Identities=19% Similarity=0.213 Sum_probs=17.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHh
Q 044788 438 TKMVCFVSALLTFFGIFLYFFIKLCR 463 (483)
Q Consensus 438 ~~~~~~~~~~~~~~g~~~~~~~~~~~ 463 (483)
++..+..+-...++++.+|.-++.-|
T Consensus 65 ~~l~~lLgPAtVALAvPLY~q~~~lk 90 (232)
T PRK04288 65 DIISFFLEPATIAFAIPLYKKRDVLK 90 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 45556777788888888886544333
No 157
>COG4060 MtrD Tetrahydromethanopterin S-methyltransferase, subunit D [Coenzyme metabolism]
Probab=24.36 E-value=1e+02 Score=26.26 Aligned_cols=31 Identities=19% Similarity=0.427 Sum_probs=22.5
Q ss_pred hhhccCcC-cchHHHHHHHHHHHHHHHHHHHH
Q 044788 245 AGEVEQPQ-RTFPKALFSAGLLTCVAYLLPLL 275 (483)
Q Consensus 245 ~~E~k~p~-r~~p~a~~~~~~~~~~~y~l~~~ 275 (483)
.|-..||+ |++||+.+.+.+...++-.+..+
T Consensus 194 IEGfHDPKfkk~pk~vias~vasil~~iia~l 225 (230)
T COG4060 194 IEGFHDPKFKKLPKAVIASLVASILAGIIAVL 225 (230)
T ss_pred eecccChhhhccchHHHHHHHHHHHHHHHHHH
Confidence 45567898 88999999988766665554443
No 158
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=23.13 E-value=28 Score=21.78 Aligned_cols=8 Identities=50% Similarity=1.289 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 044788 450 FFGIFLYF 457 (483)
Q Consensus 450 ~~g~~~~~ 457 (483)
++++.+|.
T Consensus 27 vl~~~l~~ 34 (40)
T PF08693_consen 27 VLGAFLFF 34 (40)
T ss_pred HHHHHhhe
Confidence 33333443
No 159
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=22.90 E-value=28 Score=32.16 Aligned_cols=17 Identities=12% Similarity=0.276 Sum_probs=0.0
Q ss_pred ccCCCCCCCHHHHHHHH
Q 044788 347 SRSSWFHTPWVGIFIST 363 (483)
Q Consensus 347 ~~~~~~~~P~~ai~~~~ 363 (483)
+.++|--.|...+.+..
T Consensus 13 ~r~pr~p~~~a~l~~~~ 29 (381)
T PF05297_consen 13 RRPPRCPQPHASLLFGL 29 (381)
T ss_dssp -----------------
T ss_pred CCCCCCCCcchhHHHHH
Confidence 34554455655555543
No 160
>PF07226 DUF1422: Protein of unknown function (DUF1422); InterPro: IPR009867 This family consists of several hypothetical bacterial proteins of around 120 residues in length. The function of this family is unknown.
Probab=22.48 E-value=4e+02 Score=21.18 Aligned_cols=16 Identities=13% Similarity=0.073 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHhcc
Q 044788 450 FFGIFLYFFIKLCRSN 465 (483)
Q Consensus 450 ~~g~~~~~~~~~~~~~ 465 (483)
.+.+++|..+|.+.++
T Consensus 100 ~l~L~~Wi~~kl~~~k 115 (117)
T PF07226_consen 100 CLILVFWIGYKLGFRK 115 (117)
T ss_pred HHHHHHHHHHHHhhhc
Confidence 3445555555554443
No 161
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=21.05 E-value=8.5e+02 Score=24.44 Aligned_cols=74 Identities=20% Similarity=0.384 Sum_probs=54.5
Q ss_pred HhHHHHhCChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhchhHHHHHHH
Q 044788 109 IWAHHAFGPFWGSLMGSWKFLSGVINLASYPILCIDYLKLVFPIFASGFSHYLAIFVVTLVLSFLNYTGLAIVGYTAV 186 (483)
Q Consensus 109 ~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~ 186 (483)
.+.++.||+.-..+.|-+..++...+..-....+++|....+|.. ....+..++...-..+.-.|....-++..
T Consensus 267 ~~s~~~fG~~G~~lL~~iv~lACLTTaiGLi~a~aefF~~~~p~~----SY~~~v~if~i~sflvan~GL~~Ii~isv 340 (431)
T COG1114 267 AYSQHLFGSYGSILLGLIVFLACLTTAVGLIVACAEFFSKLVPKL----SYKTWVIIFTLISFLVANLGLEQIIKISV 340 (431)
T ss_pred HHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc----cHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 577889999999999999988888888888889999999998843 23334444555555565567766655543
No 162
>PF06939 DUF1286: Protein of unknown function (DUF1286); InterPro: IPR009705 This entry is represented by Sulfolobus virus STSV1, Orf8. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical archaeal proteins of around 120 residues in length. All members of this family seem to be Sulfolobus species specific. The function of this family is unknown.
Probab=20.18 E-value=3.5e+02 Score=21.31 Aligned_cols=16 Identities=13% Similarity=0.247 Sum_probs=13.5
Q ss_pred cchHHHHHHHHHHHHH
Q 044788 253 RTFPKALFSAGLLTCV 268 (483)
Q Consensus 253 r~~p~a~~~~~~~~~~ 268 (483)
.++||++.|+.+....
T Consensus 66 HT~pRSv~WGli~slp 81 (114)
T PF06939_consen 66 HTLPRSVLWGLIPSLP 81 (114)
T ss_pred cCcchhhHHHHHHHHH
Confidence 6899999999987765
Done!