Query 044788
Match_columns 483
No_of_seqs 167 out of 1686
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 11:34:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044788.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044788hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 100.0 2.2E-53 7.7E-58 430.0 43.6 417 37-464 4-432 (445)
2 3gia_A Uncharacterized protein 100.0 7E-50 2.4E-54 404.2 42.6 420 38-470 3-430 (444)
3 4djk_A Probable glutamate/gamm 100.0 1.4E-49 4.9E-54 409.2 42.3 394 36-434 6-427 (511)
4 2jln_A MHP1; hydantoin, transp 99.3 8.1E-10 2.8E-14 111.8 29.4 288 39-335 23-329 (501)
5 3dh4_A Sodium/glucose cotransp 98.8 9.7E-06 3.3E-10 82.5 30.3 289 38-339 17-352 (530)
6 2xq2_A Sodium/glucose cotransp 98.6 6.8E-05 2.3E-09 77.4 30.6 282 40-331 48-376 (593)
7 2a65_A Leutaa, Na(+):neurotran 98.1 0.0083 2.8E-07 60.1 32.2 216 45-264 11-284 (519)
8 3gia_A Uncharacterized protein 92.6 8 0.00028 37.5 26.4 65 411-476 368-433 (444)
9 2wsw_A BCCT family betaine/car 88.8 19 0.00066 35.5 30.3 20 39-58 87-106 (509)
10 4ain_A Glycine betaine transpo 80.3 49 0.0017 32.9 19.6 152 37-193 90-277 (539)
11 2i68_A Protein EMRE; transmemb 49.6 49 0.0017 26.1 6.8 12 472-483 116-127 (137)
12 2l2t_A Receptor tyrosine-prote 40.4 21 0.00073 22.0 2.5 12 453-464 28-39 (44)
13 2ks1_B Epidermal growth factor 37.3 25 0.00086 21.7 2.5 12 453-464 29-40 (44)
14 2jln_A MHP1; hydantoin, transp 30.9 1.5E+02 0.005 29.2 8.4 38 157-194 143-180 (501)
15 3j1z_P YIIP, cation efflux fam 30.8 3E+02 0.01 24.8 10.2 18 398-415 63-80 (306)
16 2jwa_A Receptor tyrosine-prote 24.0 1.3E+02 0.0045 18.4 4.4 14 451-464 27-40 (44)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=100.00 E-value=2.2e-53 Score=430.02 Aligned_cols=417 Identities=20% Similarity=0.285 Sum_probs=355.8
Q ss_pred ccccccccchhHHHhhhhhhcc-cccCchhhHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCChHHHhHHHHh
Q 044788 37 TVTSKKLSLLPLIFLIYFEVAG-GPYGEEPAVGAAGPLFAILGFLIFPFIWSIPEALVTAELATTFPGNGGYVIWAHHAF 115 (483)
Q Consensus 37 ~~~~r~l~~~~~~~~~i~~~iG-g~~~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~l~~~el~~~~p~~Gg~y~~~~~~~ 115 (483)
++++|++++++..++.++.++| |++..|..+..+|+ ..+++|++++++ .++.+++++|+++++|++||.|+|+++.+
T Consensus 4 ~~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~-~~~~~~li~~~~-~~~~a~~~~el~~~~p~~Gg~y~~~~~~~ 81 (445)
T 3l1l_A 4 DADAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGG-IAIYGWLVTIIG-ALGLSMVYAKMSFLDPSPGGSYAYARRCF 81 (445)
T ss_dssp ---CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCT-HHHHHHHHHHHH-HHHHHHHHHHHHHHCCCTTTHHHHHHHHS
T ss_pred CCCCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhh-HHHHHHHHHHHH-HHHHHHHHHHHHccCCCCCCchhhHHhHc
Confidence 3567899999999999999999 78888888778888 577899999988 99999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHH
Q 044788 116 GPFWGSLMGSWKFLSGVINLASYPILCIDYLKLVFPIFASGFSHYLAIFVVTLVLSFLNYTGLAIVGYTAVTLGVVSLIP 195 (483)
Q Consensus 116 g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~ 195 (483)
||.+|++.||.+++++....+..+...++++..++|...++++..+++++++++.+.+|++|+|..++++.+.+.++++.
T Consensus 82 G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~ 161 (445)
T 3l1l_A 82 GPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIP 161 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGGSHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccccccHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998999999999999888876666778888999999999999999999999999999999988
Q ss_pred HHHHHHHHhcccccccccc-cCCCC--CCCchHHHHHHHHHHhcchHhhhhhhhhccCcCcchHHHHHHHHHHHHHHHHH
Q 044788 196 FLFLTVIAIPKIDSIRWIS-LGQNG--VPKNWRLFFNTLFWNLNFWDNASTLAGEVEQPQRTFPKALFSAGLLTCVAYLL 272 (483)
Q Consensus 196 ~~~~~i~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~p~r~~p~a~~~~~~~~~~~y~l 272 (483)
++++++.++.+.+++++.+ +.+.+ ...++...+...+|+|.|+|..++++||+|||+|++||+++.+..+++++|++
T Consensus 162 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip~a~~~~~~~~~~~y~~ 241 (445)
T 3l1l_A 162 IVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVL 241 (445)
T ss_dssp HHHHHHTTSTTCCCCCCCCC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChhhcccccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHH
Confidence 8888887776665554422 22111 01234445566789999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCCCCCccccHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCCCchhhhccCCCC
Q 044788 273 PLLAATGAIPLDQQNWVDGYFAEVAEIIAGKWLKICIEIGACLSIIGLYEAQLSNCAYQILGMTNLGLLPKVFGSRSSWF 352 (483)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~~~~~~~~~ 352 (483)
..+......|+++....+.|+.++++...+++...++.++.+++.+++.++.+++.+|.+++|||||.+|++|+|+|| +
T Consensus 242 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~~~~~~~~-~ 320 (445)
T 3l1l_A 242 STTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNK-A 320 (445)
T ss_dssp HHHHHHHHSCTTTSCSTTCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTSSCGGGGCCCT-T
T ss_pred HHHHHHhcCCHHHHhccCcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHhcCC-C
Confidence 999999999998888788899999999999999999999999999999999999999999999999999999999997 7
Q ss_pred CCCHHHHHHHHHHHHHHHh--------cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccCchhHHHHHHHH
Q 044788 353 HTPWVGIFISTLIALTVSY--------MDFTNIISCVNFLYSLGMLLEFASFLWLRKKLPATKRPFRVPMEMLGLIFMCI 424 (483)
Q Consensus 353 ~~P~~ai~~~~i~~~~~~~--------~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 424 (483)
++|++++++..+++.++.+ ..++.+.++.++...+.|.+.+++++++|+|+| .+ |.|..+ ++..
T Consensus 321 ~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~r~~~~-~~---r~~~~~----~~~~ 392 (445)
T 3l1l_A 321 GTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHF-GK---ARPAYL----AVTT 392 (445)
T ss_dssp CCCHHHHHHHHHHHHHHHHSTTSHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSS-GG---GCTTTH----HHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc-cc---ccchhH----HHHH
Confidence 9999999999987766553 237889999999999999999999999988776 22 334332 3344
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044788 425 IPSGFLVYVMVVATKMVCFVSALLTFFGIFLYFFIKLCRS 464 (483)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 464 (483)
++.+++++..+..++.....+.+++++|+++|..++++++
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~ 432 (445)
T 3l1l_A 393 IAFLYCIWAVVGSGAKEVMWSFVTLMVITAMYALNYNRLH 432 (445)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 5556666667777888899999999999999987765444
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=100.00 E-value=7e-50 Score=404.24 Aligned_cols=420 Identities=16% Similarity=0.200 Sum_probs=340.4
Q ss_pred cccccccchhHHHhhhhhhcc-cccCchhh-HhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCChHHHhHHHHh
Q 044788 38 VTSKKLSLLPLIFLIYFEVAG-GPYGEEPA-VGAAGPLFAILGFLIFPFIWSIPEALVTAELATTFPGNGGYVIWAHHAF 115 (483)
Q Consensus 38 ~~~r~l~~~~~~~~~i~~~iG-g~~~~~~~-~~~~G~~~~i~~~~~~~~~~~~~~~l~~~el~~~~p~~Gg~y~~~~~~~ 115 (483)
++||++++++..+++++.++| |++..++. ...+|| ..++++++++++ .++.+++++|+++++|++||.|+|+++.+
T Consensus 3 ~~~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~-~~~~~~li~~~~-~~~~~~~~~el~~~~P~~Gg~y~~~~~~~ 80 (444)
T 3gia_A 3 LKNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGR-NLPETFILSGIY-ALLVAYSYTKLGAKIVSNAGPIAFIHKAI 80 (444)
T ss_dssp CCCCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGG-GHHHHHHHHHHH-HHHHHHHHHHHHTTCCCTTTHHHHHHHHH
T ss_pred ccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHH-HHHHHHHHHHHHhhCCCCCcHHHhHHHHh
Confidence 467999999999999999999 78877655 445888 788889999988 99999999999999999999999999999
Q ss_pred CChh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHH
Q 044788 116 GPFW-GSLMGSWKFLSGVINLASYPILCIDYLKLVFPIFASGFSHYLAIFVVTLVLSFLNYTGLAIVGYTAVTLGVVSLI 194 (483)
Q Consensus 116 g~~~-g~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~ 194 (483)
||++ +...+|.+++++....+..+...++++...++...++++..++++++.++++.+|++|+|..++++.+...++++
T Consensus 81 G~~~~~g~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~ 160 (444)
T 3gia_A 81 GDNIITGALSILLWMSYVISIALFAKGFAGYFLPLINAPINTFNIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLL 160 (444)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 9973 555689999999999999999999999998876555566678888889999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccccccccCCCCCCCchHHHH---HHHHHHhcchHhhhhhhhhccCcCcchHHHHHHHHHHHHHHHH
Q 044788 195 PFLFLTVIAIPKIDSIRWISLGQNGVPKNWRLFF---NTLFWNLNFWDNASTLAGEVEQPQRTFPKALFSAGLLTCVAYL 271 (483)
Q Consensus 195 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~a~~G~e~~~~~~~E~k~p~r~~p~a~~~~~~~~~~~y~ 271 (483)
.++++++.++.+.+++++.+... +.++.+++ ...+|+|.|+|.+++++||+|||+|++||+++.+..+++++|+
T Consensus 161 ~~~~~ii~~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~r~ip~ai~~~~~~~~~~y~ 237 (444)
T 3gia_A 161 ILGLFIFAGLITIHPSYVIPDLA---PSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFISILIVMFVYV 237 (444)
T ss_dssp HHHHHHHHHHHHCCGGGTSCCCS---HHHHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcChhhcCCCCC---CcchHHHHHHHHHHHHHHHhHHHHHHHHHHccCcccchhHHHHHHHHHHHHHHH
Confidence 98888888877777666554221 23444443 3457999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCCCCCc-cccHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCCCchhhhccCC
Q 044788 272 LPLLAATGAIPLDQQNW-VDGYFAEVAEIIAGKWLKICIEIGACLSIIGLYEAQLSNCAYQILGMTNLGLLPKVFGSRSS 350 (483)
Q Consensus 272 l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~~~~~~~ 350 (483)
+..+......|++++.. .+.|+.++.+...+++...++.++.+++.+++.++.+++.+|++++|||||.+|++|+|+|+
T Consensus 238 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~f~~~~~ 317 (444)
T 3gia_A 238 GVAISAIGNLPIDELIKASENALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAKDGELPEFFERKVW 317 (444)
T ss_dssp HHHHHHHTTSCHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHSSCCSSCCTTSC
T ss_pred HHHHHHHhCCCHHHHhcccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHhCCCC
Confidence 99999998888776543 45688888888888888889999999999999999999999999999999999999999885
Q ss_pred CCCCCHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccCchhHHHHHHHHHHHHH
Q 044788 351 WFHTPWVGIFISTLIALTVS-YMDFTNIISCVNFLYSLGMLLEFASFLWLRKKLPATKRPFRVPMEMLGLIFMCIIPSGF 429 (483)
Q Consensus 351 ~~~~P~~ai~~~~i~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (483)
++|++++++..+++.++. ..+++.+.++.+....+.|.+.+++.+++|||+|+. +.......+.++..+..
T Consensus 318 --~~P~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~------~~~~~~~~~~~~~~~~~ 389 (444)
T 3gia_A 318 --FKSTEGLYITSALGVLFALLFNMEGVASITSAVFMVIYLFVILSHYILIDEVGGR------KEIVIFSFIVVLGVFLL 389 (444)
T ss_dssp --CSCTHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCCC------HHHHHHHHHHHHHHHHH
T ss_pred --CCCcHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCc------chHHHHHHHHHHHHHHH
Confidence 459999999998887765 568999999999999999999999999998887542 11112222222222222
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 044788 430 LVYVMVVATKMVCFVSALLTFFGIFLYFFIKLCRSNKWLEF 470 (483)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 470 (483)
..+.....++........+.+...+.+..++++++|+.++.
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (444)
T 3gia_A 390 LLYYQWITNRFVFYGIIATFIGVLIFEIIYRKVTKRTFSNN 430 (444)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCGG
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhccCCCcCc
Confidence 22222233445555666666666666766666665554433
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=100.00 E-value=1.4e-49 Score=409.18 Aligned_cols=394 Identities=18% Similarity=0.246 Sum_probs=298.5
Q ss_pred cccccccccchhHHHhhhhhhcccccCchhhHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhc--cCCCCChHHHhHHH
Q 044788 36 ITVTSKKLSLLPLIFLIYFEVAGGPYGEEPAVGAAGPLFAILGFLIFPFIWSIPEALVTAELAT--TFPGNGGYVIWAHH 113 (483)
Q Consensus 36 ~~~~~r~l~~~~~~~~~i~~~iGg~~~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~l~~~el~~--~~p~~Gg~y~~~~~ 113 (483)
+++++|+++++++.+++++.++| .+.++. ...+|+. .++.++++++++.++.+++++|+++ ++| +||.|+|+++
T Consensus 6 ~~~~~r~l~~~~~~~l~~~~~ig-~~~~~~-~~~~G~~-~~~~~~i~~~~~~l~~al~~ael~s~~~~P-~GG~y~~~~~ 81 (511)
T 4djk_A 6 QTGKAKQLTLLGFFAITASMVMA-VYEYPT-FATSGFS-LVFFLLLGGILWFIPVGLCAAEMATVDGWE-EGGVFAWVSN 81 (511)
T ss_dssp ------CCCHHHHHHHTGGGGCC-GGGHHH-HHTTTTH-HHHHHHHHHHHTHHHHHHHHHHHHTTSCC----CHHHHHHH
T ss_pred cCccCccccHHHHHHHHHHHHHh-hchhHH-HHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHcccccCC-CCChhhhHHh
Confidence 56788999999999999999876 455554 4568884 4444555555535679999999999 999 9999999999
Q ss_pred HhCChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh--ccccc-cchHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Q 044788 114 AFGPFWGSLMGSWKFLSGVINLASYPILCIDYLKLV--FPIFA-SGFSHYLAIFVVTLVLSFLNYTGLAIVGYTAVTLGV 190 (483)
Q Consensus 114 ~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~-~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~ 190 (483)
.+||++|+++||.++++++...+......+.++... .|... +++...+++++++++++.+|++|+|..++++.+...
T Consensus 82 ~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~ 161 (511)
T 4djk_A 82 TLGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILKWPALNEDPITKTIAALIILWALALTQFGGTKYTARIAKVGFF 161 (511)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTTTCGGGTSCSSHHHHHHHHHHHHHHHHHHTCSSSHHHHTHHHHH
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCcHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 999999999999999999998888888888888776 34443 456778888899999999999999999999999877
Q ss_pred HHHHH-HHHHHHHHhccc---ccc----cccccCCCCCCCchHHHHHHHHHHhcchHhhhhhhhhccCcCcchHHHHHHH
Q 044788 191 VSLIP-FLFLTVIAIPKI---DSI----RWISLGQNGVPKNWRLFFNTLFWNLNFWDNASTLAGEVEQPQRTFPKALFSA 262 (483)
Q Consensus 191 ~~i~~-~~~~~i~~~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~p~r~~p~a~~~~ 262 (483)
++++. ++++++.++... ++. +..+..++....+....+...+|+|.|+|.+++++||+|||+|++||+++.+
T Consensus 162 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~a~E~k~P~k~ip~ai~~~ 241 (511)
T 4djk_A 162 AGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASATHVNEMSNPGRDYPLAMLLL 241 (511)
T ss_dssp HTTHHHHHHHHHHHHHHTC------------CCCCCTTSTTTTTTHHHHHHHHTTGGGGTGGGSSSSCCTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCcccchHHHHHHHHHHHHhhHHHHHHHHHhccCcccchhHHHHHH
Confidence 75433 444444443221 111 1111111111123334566778999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCccccH---HHHHHHHHc--chHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhh
Q 044788 263 GLLTCVAYLLPLLAATGAIPLDQQNWVDGY---FAEVAEIIA--GKWLKICIEIGACLSIIGLYEAQLSNCAYQILGMTN 337 (483)
Q Consensus 263 ~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~ 337 (483)
+.+++++|++..++.....|+++....+.+ +..+.+..+ .++...++.+..+++.+++.++.+++.+|+++++||
T Consensus 242 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~ar 321 (511)
T 4djk_A 242 MVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAPEIEWTVRVISALLLLGVLAEIASWIVGPSRGMYVTAQ 321 (511)
T ss_dssp HHHHHHHHHHHHHHHHTTSCTTSCCSSSTHHHHHHHHHSSSCSSCTTHHHHHHHHHHHHHHHHHHHHTTHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHHHHeecCHhhccccchHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 999999999999999999998876654432 233333333 467788889999999999999999999999999999
Q ss_pred cCCCchhhhccCCCCCCCHHHHHHHHHHHHH-HH-hcC--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 044788 338 LGLLPKVFGSRSSWFHTPWVGIFISTLIALT-VS-YMD--------FTNIISCVNFLYSLGMLLEFASFLWLRKKLPATK 407 (483)
Q Consensus 338 dg~lP~~~~~~~~~~~~P~~ai~~~~i~~~~-~~-~~~--------~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 407 (483)
||.+|++|+|+|| +++|++++++..++..+ +. +.+ ++.+.++.++...+.|.+.+++++++|+|+|+.+
T Consensus 322 dg~lP~~~~~~~~-~~~P~~ai~~~~~~~~l~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~y~~~~~~~~~~r~~~~~~~ 400 (511)
T 4djk_A 322 KNLLPAAFAKMNK-NGVPVTLVISQLVITSIALIILTNTGGGNNMSFLIALALTVVIYLCAYFMLFIGYIVLVLKHPDLK 400 (511)
T ss_dssp GGGCSSSCCCCCS-SSCCCHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCC
T ss_pred CCcccHHHHhcCC-CCCcHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 9999999999998 79999999988444332 22 233 7889999999999999999999999999998889
Q ss_pred CCcccCchhHHHHHHHHHHHHHHHHHH
Q 044788 408 RPFRVPMEMLGLIFMCIIPSGFLVYVM 434 (483)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (483)
||||.|.+++...++.+++.+.+++..
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (511)
T 4djk_A 401 RTFNIPGGKGVKLVVAIVGLLTSIMAF 427 (511)
T ss_dssp CSCCCSSTTHHHHHHHHHHHHHHHHHH
T ss_pred CCeecCCCchHHHHHHHHHHHHHHHHH
Confidence 999998765543334444444444433
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=99.35 E-value=8.1e-10 Score=111.79 Aligned_cols=288 Identities=11% Similarity=0.033 Sum_probs=156.7
Q ss_pred ccccccchhHHHhhhhhhcc-cccCchhhHhh-hChHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCChHHHhHHHHhC
Q 044788 39 TSKKLSLLPLIFLIYFEVAG-GPYGEEPAVGA-AGPLFAILGFLIFPFIWSIPEALVTAELATTFPGNGGYVIWAHHAFG 116 (483)
Q Consensus 39 ~~r~l~~~~~~~~~i~~~iG-g~~~~~~~~~~-~G~~~~i~~~~~~~~~~~~~~~l~~~el~~~~p~~Gg~y~~~~~~~g 116 (483)
.+|+.++++.+.+=++..+. +.+.++..... -+....+++.+++.++..++ ....+..+.++-.+ .....+..||
T Consensus 23 ~~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~~GLs~~~a~lai~lG~li~~~~-~~l~~~~G~~~Gl~--~~v~~R~~FG 99 (501)
T 2jln_A 23 AERSVGPFSLAAIWFAMAIQVAIFIAAGQMTSSFQVWQVIVAIAAGCTIAVIL-LFFTQSAAIRWGIN--FTVAARMPFG 99 (501)
T ss_dssp GGCCBCHHHHHHHHHHHHCSTHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHH-HHHHTHHHHHHCCC--HHHHTTTTSC
T ss_pred hhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHH-HHHHhHHHhhcCCC--hhhhhHhhcc
Confidence 34677899998888877655 33444433333 12234455555555441222 22234444443222 4457888999
Q ss_pred ChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHH
Q 044788 117 PFWGSLMGSWKFLSGVINLASYPILCIDYLKLVFPIFASGFSHYLAIFVVTLVLSFLNYTGLAIVGYTAVTLGVVSLIPF 196 (483)
Q Consensus 117 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~~ 196 (483)
++.+.+......+..+...+......++.+...++...+..+.++..+++.++...+.+.|.|...+++.+...+.++..
T Consensus 100 ~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~g~~~~~v~~~i~~~l~~~~~~~G~~~i~~~~~~~~p~~~i~~ 179 (501)
T 2jln_A 100 IRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLTGFTNLPLWIVIFGAIQVVTTFYGITFIRWMNVFASPVLLAMG 179 (501)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 99999999888887777777777777777766643211001134444455566677788999999999999888777776
Q ss_pred HHHHHHHhccccc--ccccccCCCCCCCchHHHHHH-HHHHhcchHhhhhhhhhccCcCcc-----------hHHHHHHH
Q 044788 197 LFLTVIAIPKIDS--IRWISLGQNGVPKNWRLFFNT-LFWNLNFWDNASTLAGEVEQPQRT-----------FPKALFSA 262 (483)
Q Consensus 197 ~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~a~~G~e~~~~~~~E~k~p~r~-----------~p~a~~~~ 262 (483)
+.+.+..+.+.+. +.....++.....++...+.. ..+...+.-..+.++.+.|++++. .-++..++
T Consensus 180 i~~~~~~l~~~g~~~~~~~~~~~~~~~~~f~~ai~~~~~~~~~~~~~~~DysRy~~~~~~~~~~~~~~~~~~~~~g~~lG 259 (501)
T 2jln_A 180 VYMVYLMLDGADVSLGEVMSMGGENPGMPFSTAIMIFVGGWIAVVVSIHDIVKECKVDPNASREGQTKADARYATAQWLG 259 (501)
T ss_dssp HHHHHHHHHHHTCCHHHHTTCCCSSCCSCHHHHHHHHHTTTHHHHTTTHHHHTTBCCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcchhhhccCCccchHHHHHHHHHHHHHHHHHHhccCcccccCCCCccccccchhhccchHHHHHHHH
Confidence 6666655544332 111111111112234333322 122223334467788888887441 33444444
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCccccHHHHHHHHHcchHH-HHHHH-HHHHHHHHHHHH-HHhhhhhHHHHHh
Q 044788 263 GLLTCVAYLLPLLAATGAIPLDQQNWVDGYFAEVAEIIAGKWL-KICIE-IGACLSIIGLYE-AQLSNCAYQILGM 335 (483)
Q Consensus 263 ~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~-~~~~~~sR~l~~~ 335 (483)
..+...+..+........ ....+|...+.+...++.. ..+.. +..+++.+++.. ...++.+--+..+
T Consensus 260 ~~i~~~~~~~lG~~~~~~------~~~~dp~~~l~~~l~~~~~~~~~~~~~~~~la~i~tn~~~n~ys~~~~l~~~ 329 (501)
T 2jln_A 260 MVPASIIFGFIGAASMVL------VGEWNPVIAITEVVGGVSIPMAILFQVFVLLATWSTNPAANLLSPAYTLCST 329 (501)
T ss_dssp HHHHHHHHHHHHHHHHHH------HSCSCHHHHHHHHHTCCCHHHHHHHHHHHHHHHHTTHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh------ccccCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 444443333332222221 1234566666554444433 55555 666666666554 3566666544444
No 5
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=98.77 E-value=9.7e-06 Score=82.53 Aligned_cols=289 Identities=13% Similarity=0.027 Sum_probs=140.5
Q ss_pred cccccccchhHHHhhhhhhcc--cccCchhhHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCChHHHhHHHHh
Q 044788 38 VTSKKLSLLPLIFLIYFEVAG--GPYGEEPAVGAAGPLFAILGFLIFPFIWSIPEALVTAELATTFPGNGGYVIWAHHAF 115 (483)
Q Consensus 38 ~~~r~l~~~~~~~~~i~~~iG--g~~~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~l~~~el~~~~p~~Gg~y~~~~~~~ 115 (483)
.-.|+++++......+++.++ ...+.++..+..|.....+.|. .++. .+..+..+...-.+. +.-..++|.++-+
T Consensus 17 laGR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~~G~~~~~~~~~-~~~~-~~i~~~~~~p~~~~~-~~~T~~e~l~~Rf 93 (530)
T 3dh4_A 17 XAGKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWM-SAIT-LIIVGKYFLPIFIEK-GIYTIPEFVEKRF 93 (530)
T ss_dssp CCCSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHHTCGGGHHHHHH-HHHH-HHHHHHHTHHHHHHT-TCCSHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHH-HHHH-HHHHHHHHHHHHHHc-CCccHHHHHHHHc
Confidence 346899999888888887777 3467777777766533222221 1111 122233333333333 3458999999999
Q ss_pred CChhHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHhccccccchHHHHHHHH-HHHHHHHHHhhchhHHHHHHHHHHHHHH
Q 044788 116 GPFWGSLMGSWKFLSGVI-NLASYPILCIDYLKLVFPIFASGFSHYLAIFV-VTLVLSFLNYTGLAIVGYTAVTLGVVSL 193 (483)
Q Consensus 116 g~~~g~~~g~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~g~~~~~~~~~~~~~~~i 193 (483)
|++...+.+....+.+.. ..+......+..++..++. +.+...++ ..+......+-|.|...+...+-.++.+
T Consensus 94 g~~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~~Gi-----~~~~~i~i~~~i~~~Yt~~GGl~aV~~TD~iQ~~im~ 168 (530)
T 3dh4_A 94 NKKLKTILAVFWISLYIFVNLTSVLYLGGLALETILGI-----PLMYSILGLALFALVYSIYGGLSAVVWTDVIQVFFLV 168 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHTTC------CCSHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 998887777665544433 2344444555566666552 12211111 1122223333466665554444344433
Q ss_pred HHHHHHHHHHhcc----------------cccccccccCCCC-C----CCchHHHHHHH---HHHhcchHh-hhhhhhhc
Q 044788 194 IPFLFLTVIAIPK----------------IDSIRWISLGQNG-V----PKNWRLFFNTL---FWNLNFWDN-ASTLAGEV 248 (483)
Q Consensus 194 ~~~~~~~i~~~~~----------------~~~~~~~~~~~~~-~----~~~~~~~~~~~---~~a~~G~e~-~~~~~~E~ 248 (483)
+..++..+..+.+ .+++.+.....++ + ..++...+... -..|.|.+. ..+-.=..
T Consensus 169 ~g~~~v~~~~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~g~~q~i~qR~laa 248 (530)
T 3dh4_A 169 LGGFMTTYMAVSFIGGTDGWFAGVSKMVDAAPGHFEMILDQSNPQYMNLPGIAVLIGGLWVANLYYWGFNQYIIQRTLAA 248 (530)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHCGGGGCSSCCSSSSGGGGSCTTHHHHSTHHHHHHHHTTTTCHHHHHHHSS
T ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHHHhcCchhcccccCCCCccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 3322222222111 0111111110110 0 01122111111 122334321 22223335
Q ss_pred cCcCcchHHHHHHHHHHHHHHHHH---HHHHHhhccCC---------------CCCCccccHHHHHHHHHcchHHHHHHH
Q 044788 249 EQPQRTFPKALFSAGLLTCVAYLL---PLLAATGAIPL---------------DQQNWVDGYFAEVAEIIAGKWLKICIE 310 (483)
Q Consensus 249 k~p~r~~p~a~~~~~~~~~~~y~l---~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (483)
||+ |+..|+.+++........++ ..++.....++ ++..+.+..+..+.+ ..++++..++.
T Consensus 249 ks~-k~ar~~~~~~~~~~~~~~~~~~~~Gl~a~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~l~~-~lp~~l~Gl~~ 326 (530)
T 3dh4_A 249 KSV-SEAQKGIVFAAFLKLIVPFLVVLPGIAAYVITSDPQLMASLGDIAATNLPSAANADKAYPWLTQ-FLPVGVKGVVF 326 (530)
T ss_dssp SCH-HHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHCHHHHHHHCTTCCSCCCCSSSGGGHHHHHHT-TCCTTHHHHHH
T ss_pred CCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccchhhcccccccCCCCCCcchHHHHHHH-HcchhHHHHHH
Confidence 776 67888888776543332221 11111111100 223445667777776 77888888888
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHhhhcC
Q 044788 311 IGACLSIIGLYEAQLSNCAYQILGMTNLG 339 (483)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~sR~l~~~a~dg 339 (483)
.+++.+..++..+.+.+.+-. ..+|=
T Consensus 327 a~llAA~mST~ss~l~s~st~---~~~Di 352 (530)
T 3dh4_A 327 AALAAAIVSSLASMLNSTATI---FTMDI 352 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHT
T ss_pred HHHHHHHHHHHHHHHHHhHHH---HHhHH
Confidence 888888888888888877744 45553
No 6
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=98.59 E-value=6.8e-05 Score=77.38 Aligned_cols=282 Identities=13% Similarity=0.031 Sum_probs=139.0
Q ss_pred cccccchhHHHhhhhhhcc--cccCchhhHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCChHHHhHHHHhCC
Q 044788 40 SKKLSLLPLIFLIYFEVAG--GPYGEEPAVGAAGPLFAILGFLIFPFIWSIPEALVTAELATTFPGNGGYVIWAHHAFGP 117 (483)
Q Consensus 40 ~r~l~~~~~~~~~i~~~iG--g~~~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~l~~~el~~~~p~~Gg~y~~~~~~~g~ 117 (483)
.|+++++....-.+++.++ ..++.++..+..|.....+.|. ..+. .+..++.+...-.+. +.-..++|.++-+|+
T Consensus 48 GR~l~~~~~~~Sl~at~~sa~t~lG~~g~~y~~G~~~~~~~~~-~~~~-~~~~~~~~~p~~~r~-~~~T~~e~l~~Rfg~ 124 (593)
T 2xq2_A 48 GKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWM-SAIT-LIIVGKYFLPIFIEK-GIYTIPEFVEKRFNK 124 (593)
T ss_dssp ---CCHHHHHHHHHGGGSSHHHHHHHHHHHHHTCGGGGHHHHH-HHHH-HHHHHHTHHHHHHHT-TCCSHHHHHHHHTCH
T ss_pred CCCCCHHHHHHHHHHHHhcHHHHhhHhHHHHHcCHHHHHHHHH-HHHH-HHHHHHHHHHHHHhC-CCCCcHHHHHHHccC
Confidence 5788888776666666666 3457777777666532222111 1111 222233344433443 335799999999999
Q ss_pred hhHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHhccccccchHHHHHH-HHHHHHHHHHHhhchhHHHHHHHHHHHHHHHH
Q 044788 118 FWGSLMGSWKFLSGV-INLASYPILCIDYLKLVFPIFASGFSHYLAI-FVVTLVLSFLNYTGLAIVGYTAVTLGVVSLIP 195 (483)
Q Consensus 118 ~~g~~~g~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~ 195 (483)
....+.+....+.+. ...+....+.+..++..++. +.+... +...+........|.|...+...+=.+++++.
T Consensus 125 ~~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~Gi-----~~~~~i~i~~~i~~~Yt~~GGl~av~~TD~iQ~iiml~~ 199 (593)
T 2xq2_A 125 KLKTILAVFWISLYIFVNLTSVLYLGGLALETILGI-----PLMYSILGLALFALVYSIYGGLSAVVWTDVIQVFFLVLG 199 (593)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHHHTTC---CCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-----cHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 887777665554433 33444555556666666542 122221 22223334445567776665544444444433
Q ss_pred HHHHHHHHhcccc----------------cccccccCCCCC-----CCchHHHHHH---HHHHhcchH-hhhhhhhhccC
Q 044788 196 FLFLTVIAIPKID----------------SIRWISLGQNGV-----PKNWRLFFNT---LFWNLNFWD-NASTLAGEVEQ 250 (483)
Q Consensus 196 ~~~~~i~~~~~~~----------------~~~~~~~~~~~~-----~~~~~~~~~~---~~~a~~G~e-~~~~~~~E~k~ 250 (483)
.++..+..+.+.+ ++.+....+.+. ...+...+.. ....+.|.+ ...+-.=+.||
T Consensus 200 ~l~v~~~~l~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~q~~~qR~laaks 279 (593)
T 2xq2_A 200 GFMTTYMAVSFIGGTDGWFAGVSKMVDAAPGHFEMILDQSNPQYMNLPGIAVLIGGLWVANLYYWGFNQYIIQRTLAAKS 279 (593)
T ss_dssp HHHHHHHHHHHHHGGGHHHHHHHHHHHHCGGGSCSSCCSSSGGGGTSCTTHHHHSTHHHHHHHHHTTTCSHHHHHHTTSC
T ss_pred HHHHHHHHHHHcCCchhHHHHHHHHHhhChhhcccccCCCCcccccchHHHHHHHHHHHHHHHhhcCChHHHHHhheeCC
Confidence 3332222221110 111111111110 0112211111 112233443 23444556788
Q ss_pred cCcchHHHHHHHHHHHHHHHHHHH---HHHhhc-cC--------------CCCCCccccHHHHHHHHHcchHHHHHHHHH
Q 044788 251 PQRTFPKALFSAGLLTCVAYLLPL---LAATGA-IP--------------LDQQNWVDGYFAEVAEIIAGKWLKICIEIG 312 (483)
Q Consensus 251 p~r~~p~a~~~~~~~~~~~y~l~~---~~~~~~-~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (483)
+ |+..|+.+++......+.++.. +..... .+ .++..+.+..+..+. +..++++..++..+
T Consensus 280 ~-k~ar~~~~~~~~~~~~~~~~~~~~Gl~a~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~p~l~-~~lp~~l~gl~~a~ 357 (593)
T 2xq2_A 280 V-SEAQKGIVFAAFLALIVPFLVVLPGIAAYVITSDPQLMASLGDIAATNLPSAANADKAYPWLT-QFLPVGVKGVVFAA 357 (593)
T ss_dssp H-HHHHHHHHHHHHHTTTHHHHHTHHHHHHHHHHTCHHHHHHHC-----CCCCSTBGGGHHHHHH-HTSCHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccCCCCCChhhHHHHHH-HHcChhHHHHHHHH
Confidence 6 7789998887765444333221 111111 00 112233455666677 77889988888888
Q ss_pred HHHHHHHHHHHHhhhhhHH
Q 044788 313 ACLSIIGLYEAQLSNCAYQ 331 (483)
Q Consensus 313 ~~~~~~~~~~~~~~~~sR~ 331 (483)
++.+..++..+.+.+.+-.
T Consensus 358 llaA~mST~~s~l~a~st~ 376 (593)
T 2xq2_A 358 LAAAIVSSLASMLNSTATI 376 (593)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888888888887776644
No 7
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=98.14 E-value=0.0083 Score=60.07 Aligned_cols=216 Identities=14% Similarity=0.119 Sum_probs=112.1
Q ss_pred chhHHHhhhhhhcc-c-ccCchhhHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhh-----ccCCCCChHHHhHHHHhCC
Q 044788 45 LLPLIFLIYFEVAG-G-PYGEEPAVGAAGPLFAILGFLIFPFIWSIPEALVTAELA-----TTFPGNGGYVIWAHHAFGP 117 (483)
Q Consensus 45 ~~~~~~~~i~~~iG-g-~~~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~l~~~el~-----~~~p~~Gg~y~~~~~~~g~ 117 (483)
..+.+.-++|..+| | +.-.|...++.|..+.++.+++..++..+|.. +.|++ ++..+.|..-.|-+ ..++
T Consensus 11 r~~FiLa~~G~AVGLGNiWRFPyl~~~nGGgAFlipYli~l~~~GiPll--~~E~alGq~~~~~~r~~~i~a~~~-l~~~ 87 (519)
T 2a65_A 11 RLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLM--WIEWAMGRYGGAQGHGTTPAIFYL-LWRN 87 (519)
T ss_dssp HHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHH--HHHHHHHHHHHTTTCCSHHHHHHH-HSCS
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHH--HHHHHhcccchhccCCCHHHHHHH-hcCC
Confidence 35667777788888 3 56778888775554666666665543344433 35533 32444444444422 2222
Q ss_pred hhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh--------------------------------cccc------cc-chH
Q 044788 118 FWGSLMGSWKFLSGVINLASYPILCIDYLKLV--------------------------------FPIF------AS-GFS 158 (483)
Q Consensus 118 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--------------------------------~~~~------~~-~~~ 158 (483)
......||...+........+....+..+.++ .... ++ ++.
T Consensus 88 ~~~~giG~~~v~~~~~i~~yY~vi~gW~l~Y~~~s~~~~lp~~w~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~g~~~~~ 167 (519)
T 2a65_A 88 RFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEPPPNATDPDSILRPFKEFLYSYIGVPKGDEPILKPSLF 167 (519)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC--CCHHHHHHHHHHHHHHHHTCCSSSSCBCCCCHH
T ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCcccccCcHHHHHHHHHCCCCCcccccCccHH
Confidence 12233444433333333333333222222111 1100 00 133
Q ss_pred HHHHHHHHHHHHHHHHhhch-hHHHHHHHHHHHHHHHHHHHHHHHHhccccc-----cc----ccccCCCC-CCCchHHH
Q 044788 159 HYLAIFVVTLVLSFLNYTGL-AIVGYTAVTLGVVSLIPFLFLTVIAIPKIDS-----IR----WISLGQNG-VPKNWRLF 227 (483)
Q Consensus 159 ~~~~~~~~~~~~~~i~~~g~-~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~-----~~----~~~~~~~~-~~~~~~~~ 227 (483)
.....+++.++..++..+|+ |-..|.+.++...-.+.++++.+.++.-.++ +. +.|+-..- .+..|..+
T Consensus 168 ~~~~~~~~w~i~~~ii~~Gv~kgiek~~~~~mp~l~vlliiL~ir~ltLpGp~~~A~~Gl~~~~~Pd~s~L~~~~vw~~A 247 (519)
T 2a65_A 168 AYIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIAA 247 (519)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHTTCEETTEEHHHHHHHHHSCCTTSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCHHHhCCHHHHHHH
Confidence 33333444555566778899 6688888887776666666666655543221 11 12211110 12357777
Q ss_pred HHHHHHHhc-chHhhhhhhhhccCcCcchHHHHHHHHH
Q 044788 228 FNTLFWNLN-FWDNASTLAGEVEQPQRTFPKALFSAGL 264 (483)
Q Consensus 228 ~~~~~~a~~-G~e~~~~~~~E~k~p~r~~p~a~~~~~~ 264 (483)
...++|+++ |+....+++.-.|+ +.|++|..+....
T Consensus 248 ~gQ~FFSLslG~G~~ity~SY~~~-~~n~~~~a~~v~~ 284 (519)
T 2a65_A 248 VGQIFFTLSLGFGAIITYASYVRK-DQDIVLSGLTAAT 284 (519)
T ss_dssp HHHHHHHHTTTSSHHHHHHTTSCT-TSCCHHHHHHHHH
T ss_pred HHHHHHHhHHHHhHHhhhhcccCC-CcChHhhHHHHHH
Confidence 777888876 88888888887775 4677776554433
No 8
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=92.58 E-value=8 Score=37.53 Aligned_cols=65 Identities=14% Similarity=-0.019 Sum_probs=33.8
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHHHHHHHHHhccccccccccccc
Q 044788 411 RVPMEMLGLIFMCIIPSGFLVYVMVVATKMV-CFVSALLTFFGIFLYFFIKLCRSNKWLEFKNFEEK 476 (483)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 476 (483)
|.|..+. ..+.+++......+......+.. .........+.......+...++++.++.+.....
T Consensus 368 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (444)
T 3gia_A 368 EVGGRKE-IVIFSFIVVLGVFLLLLYYQWITNRFVFYGIIATFIGVLIFEIIYRKVTKRTFSNNMYV 433 (444)
T ss_dssp HHCCCHH-HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCGGGTT
T ss_pred cCCCcch-HHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhccCCCcCceee
Confidence 3466643 33333333333333333333333 33344455566666677777778777776666543
No 9
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=88.85 E-value=19 Score=35.50 Aligned_cols=20 Identities=15% Similarity=0.373 Sum_probs=15.8
Q ss_pred ccccccchhHHHhhhhhhcc
Q 044788 39 TSKKLSLLPLIFLIYFEVAG 58 (483)
Q Consensus 39 ~~r~l~~~~~~~~~i~~~iG 58 (483)
.|-+++.++.+++.+++=+|
T Consensus 87 ~kPefs~~sW~aMlF~aGmG 106 (509)
T 2wsw_A 87 EKPEFSTASWIFMMFASCTS 106 (509)
T ss_dssp SCCSSCHHHHHHHHHHHTCC
T ss_pred CCCCCccchHHHHHHHHhhh
Confidence 55678888888888887666
No 10
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=80.26 E-value=49 Score=32.85 Aligned_cols=152 Identities=14% Similarity=0.193 Sum_probs=69.6
Q ss_pred ccccccccchhHHHhhhhhhcc-cc--cCchhhHh--hh-----Ch----H--------HHHHHHHHHHHHHHHHHHHHH
Q 044788 37 TVTSKKLSLLPLIFLIYFEVAG-GP--YGEEPAVG--AA-----GP----L--------FAILGFLIFPFIWSIPEALVT 94 (483)
Q Consensus 37 ~~~~r~l~~~~~~~~~i~~~iG-g~--~~~~~~~~--~~-----G~----~--------~~i~~~~~~~~~~~~~~~l~~ 94 (483)
.+.|.+++.++.+++.+++=+| |+ ++...-+. .. .+ . ..+-+|.+.++. ++++
T Consensus 90 ~d~kPefS~~sW~aMlF~AGmGiGl~FwgvaEPl~h~~~pP~~~~~eAa~~Am~~t~fHWG~~~WAiYav~-----glal 164 (539)
T 4ain_A 90 IDEAPEFRTVSWISMMFAAGMGIGLMFYGTTEPLTFYRNGVPGHDEHNVGVAMSTTMFHWTLHPWAIYAIV-----GLAI 164 (539)
T ss_dssp TTCCCSSCHHHHHHHHHTTSCCTHHHHHHHHHHHHHHHTCCTTSCSSCHHHHHHHHHHHHSHHHHHHHHHH-----HHHH
T ss_pred CCCCCCCcchHHHHHHHHHhhcchheeehhhhhHHHhcCCCCCccHHHHHHHHHHHHHhcChHHHHHHHHH-----HHHH
Confidence 3456788899999998887666 43 12211111 00 00 0 113345554443 4444
Q ss_pred HHhh--ccCCC--CChHHHhHHHH-hCChhHHHHHHHHHHHhhhhHHHH----HHHHHHHHHHhcccc-ccchHHHHHHH
Q 044788 95 AELA--TTFPG--NGGYVIWAHHA-FGPFWGSLMGSWKFLSGVINLASY----PILCIDYLKLVFPIF-ASGFSHYLAIF 164 (483)
Q Consensus 95 ~el~--~~~p~--~Gg~y~~~~~~-~g~~~g~~~g~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~-~~~~~~~~~~~ 164 (483)
+.+. ...|- +...|-...+- ....+|.+.-....++.+.+.+.. +...+.-++.+++.. ++......+.+
T Consensus 165 aY~~yrk~~pl~iss~l~PllG~r~~~G~~G~~IDilav~atv~GvatSLGlg~~Qi~~Gl~~lfGi~~~~~~~qi~ii~ 244 (539)
T 4ain_A 165 AYSTFRVGRKQLLSSAFVPLIGEKGAEGWLGKLIDILAIIATVFGTACSLGLGALQIGAGLSAANIIEDPSDWTIVGIVS 244 (539)
T ss_dssp HCCCCCTCCCSCTTGGGHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCSTTTTTHHHH
T ss_pred HHHHhcCCCCCcHHHHhHhhcCCCccCCcchhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCCCChHHHHHHHH
Confidence 4333 33343 34555554432 333456666655555555443332 233333455555432 22222223332
Q ss_pred HHHHHHHHHHh----hchhHHHHHHHHHHHHHH
Q 044788 165 VVTLVLSFLNY----TGLAIVGYTAVTLGVVSL 193 (483)
Q Consensus 165 ~~~~~~~~i~~----~g~~~~~~~~~~~~~~~i 193 (483)
++..+++.-.. +|+|..+.+|..+.+..+
T Consensus 245 vit~i~~~Sa~sGl~kGIk~LS~~N~~La~~Ll 277 (539)
T 4ain_A 245 VLTLAFIFSAISGVGKGIQYLSNANMVLAALLA 277 (539)
T ss_dssp HHHHHHHHHHHC---CCHHHHGGGHCCCCCHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333 577788777765544433
No 11
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=49.60 E-value=49 Score=26.14 Aligned_cols=12 Identities=25% Similarity=0.357 Sum_probs=0.0
Q ss_pred cccccCCCCCCC
Q 044788 472 NFEEKLDNEDVN 483 (483)
Q Consensus 472 ~~~~~~~~e~~~ 483 (483)
...+++.+||+|
T Consensus 116 v~~~~~~~~~~~ 127 (137)
T 2i68_A 116 VEQKLISEEDLN 127 (137)
T ss_dssp ------------
T ss_pred hhhhhcCHHHhh
Confidence 355677888876
No 12
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=40.44 E-value=21 Score=21.98 Aligned_cols=12 Identities=0% Similarity=0.124 Sum_probs=5.0
Q ss_pred HHHHHHHHHHhc
Q 044788 453 IFLYFFIKLCRS 464 (483)
Q Consensus 453 ~~~~~~~~~~~~ 464 (483)
+.+++++|++++
T Consensus 28 ~~~~~~~RRRr~ 39 (44)
T 2l2t_A 28 LTFAVYVRRKSI 39 (44)
T ss_dssp HHHHHHHHTTCS
T ss_pred HHHHHHhhhhhh
Confidence 334444444333
No 13
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=37.27 E-value=25 Score=21.67 Aligned_cols=12 Identities=8% Similarity=0.141 Sum_probs=4.8
Q ss_pred HHHHHHHHHHhc
Q 044788 453 IFLYFFIKLCRS 464 (483)
Q Consensus 453 ~~~~~~~~~~~~ 464 (483)
+.+++++|++++
T Consensus 29 ~~~~~~~RRr~~ 40 (44)
T 2ks1_B 29 LGIGLFMRRRHI 40 (44)
T ss_dssp HHHHHHHHTTTC
T ss_pred HHHHHHhhhhHh
Confidence 334444444333
No 14
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=30.90 E-value=1.5e+02 Score=29.24 Aligned_cols=38 Identities=11% Similarity=-0.005 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHH
Q 044788 157 FSHYLAIFVVTLVLSFLNYTGLAIVGYTAVTLGVVSLI 194 (483)
Q Consensus 157 ~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~ 194 (483)
+...++..++.+...+.-+..++...++......+..+
T Consensus 143 ~v~~~i~~~l~~~~~~~G~~~i~~~~~~~~p~~~i~~i 180 (501)
T 2jln_A 143 PLWIVIFGAIQVVTTFYGITFIRWMNVFASPVLLAMGV 180 (501)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 33444434444555566666666666665544444433
No 15
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=30.82 E-value=3e+02 Score=24.83 Aligned_cols=18 Identities=0% Similarity=-0.169 Sum_probs=9.9
Q ss_pred HHHHhCCCCCCCcccCch
Q 044788 398 WLRKKLPATKRPFRVPME 415 (483)
Q Consensus 398 ~~r~~~~~~~~~~~~~~~ 415 (483)
++.+|.++.+.||.....
T Consensus 63 ~~s~k~~d~~~pyG~~R~ 80 (306)
T 3j1z_P 63 RYAIVPADHDHRYGHGKA 80 (306)
T ss_dssp HHHTSCCCCTTSSCCTTH
T ss_pred HHhCCCCcccCCCchhhH
Confidence 444555665667755433
No 16
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=24.03 E-value=1.3e+02 Score=18.43 Aligned_cols=14 Identities=21% Similarity=0.413 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHhc
Q 044788 451 FGIFLYFFIKLCRS 464 (483)
Q Consensus 451 ~g~~~~~~~~~~~~ 464 (483)
+++++..+.||++.
T Consensus 27 ~~l~~~~~~RRR~~ 40 (44)
T 2jwa_A 27 LGVVFGILIKRRQQ 40 (44)
T ss_dssp HHHHHHHHHHHHCS
T ss_pred HHHHHHhheehhhh
Confidence 33333434444433
Done!