BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044790
(162 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3F7A|A Chain A, Structure Of Orthorhombic Crystal Form Of Pseudomonas
Aeruginosa Rssb
pdb|3F7A|B Chain B, Structure Of Orthorhombic Crystal Form Of Pseudomonas
Aeruginosa Rssb
Length = 394
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 7/97 (7%)
Query: 3 VIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHD 62
V+ NGLQ +I E +Q DLV+ ++ P + G+ L+R+I +T P+I++S
Sbjct: 32 VLQALNGLQGLQIFES--EQPDLVICDLRXPQIDGLELIRRI--RQTASETPIIVLSGAG 87
Query: 63 SMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVWRKC 99
MS + L GA +L+KP+ E + +H R+
Sbjct: 88 VMSDAVEALRLGAADYLIKPL---EDLAVLEHSVRRA 121
>pdb|1W25|A Chain A, Response Regulator Pled In Complex With C-digmp
pdb|1W25|B Chain B, Response Regulator Pled In Complex With C-digmp
pdb|2V0N|A Chain A, Activated Response Regulator Pled In Complex With C-Digmp
And Gtp-Alpha-S
pdb|2V0N|B Chain B, Activated Response Regulator Pled In Complex With C-Digmp
And Gtp-Alpha-S
Length = 459
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 38/63 (60%)
Query: 21 DQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80
D D++L +V+MP + G + RK+ + T ++IPV+++++ D + L GA FL
Sbjct: 44 DLPDIILLDVMMPGMDGFTVCRKLKDDPTTRHIPVVLITALDGRGDRIQGLESGASDFLT 103
Query: 81 KPI 83
KPI
Sbjct: 104 KPI 106
Score = 31.2 bits (69), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/106 (20%), Positives = 43/106 (40%), Gaps = 9/106 (8%)
Query: 4 IAVENGLQAWKILEDLMDQ--------IDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPV 55
+A E G++ ++E ++ +DLV+ G+ + + + + +PV
Sbjct: 168 VAAELGVEHRPVIESDPEKAKISAGGPVDLVIVNAAAKNFDGLRFTAALRSEERTRQLPV 227
Query: 56 IMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQ-NLWQHVWRKCH 100
+ M D + K L G L +PI EL + + RK +
Sbjct: 228 LAMVDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKTQIQRKRY 273
>pdb|2WB4|A Chain A, Activated Diguanylate Cyclase Pled In Complex With
C-Di-Gmp
pdb|2WB4|B Chain B, Activated Diguanylate Cyclase Pled In Complex With
C-Di-Gmp
Length = 459
Score = 49.7 bits (117), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 38/63 (60%)
Query: 21 DQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80
D D++L +V+MP + G + RK+ + T ++IPV+++++ D + L GA FL
Sbjct: 45 DLPDIILLDVMMPGMDGFTVCRKLKDDPTTRHIPVVLITALDGRGDRIQGLESGASDFLT 104
Query: 81 KPI 83
KPI
Sbjct: 105 KPI 107
Score = 30.8 bits (68), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/106 (20%), Positives = 43/106 (40%), Gaps = 9/106 (8%)
Query: 4 IAVENGLQAWKILEDLMDQ--------IDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPV 55
+A E G++ ++E ++ +DLV+ G+ + + + + +PV
Sbjct: 169 VAAELGVEHRPVIESDPEKAKISAGGPVDLVIVNAAAKNFDGLRFTAALRSEERTRQLPV 228
Query: 56 IMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQ-NLWQHVWRKCH 100
+ M D + K L G L +PI EL + + RK +
Sbjct: 229 LAMVDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKTQIQRKRY 274
>pdb|3EQ2|A Chain A, Structure Of Hexagonal Crystal Form Of Pseudomonas
Aeruginosa Rssb
pdb|3EQ2|B Chain B, Structure Of Hexagonal Crystal Form Of Pseudomonas
Aeruginosa Rssb
Length = 394
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 7/97 (7%)
Query: 3 VIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHD 62
V+ NGLQ +I E +Q DLV+ ++ P + G+ L+R+I +T P+I++S
Sbjct: 32 VLQALNGLQGLQIFES--EQPDLVICDLRXPQIDGLELIRRI--RQTASETPIIVLSGAG 87
Query: 63 SMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVWRKC 99
S + L GA +L+KP+ E + +H R+
Sbjct: 88 VXSDAVEALRLGAADYLIKPL---EDLAVLEHSVRRA 121
>pdb|3GWG|A Chain A, Crystal Structure Of Chey Of Helicobacter Pylori
pdb|3H1E|A Chain A, Crystal Structure Of Mg(2+) And Beh(3)(-)-Bound Chey Of
Heli Pylori
Length = 129
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 3 VIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHD 62
V+ E+G++AW+ L+ D +++T+ MP ++G+ L++K+ + K IP+IM+++
Sbjct: 33 VLEAEHGVEAWEKLDANADT-KVLITDWNMPEMNGLDLVKKVRSDSRFKEIPIIMITTEG 91
Query: 63 SMSIVFKCLSKGAVYFLVKPI 83
+ V L G ++VKP
Sbjct: 92 GKAEVITALKAGVNNYIVKPF 112
>pdb|3H1G|A Chain A, Crystal Structure Of Chey Mutant T84a Of Helicobacter
Pylori
Length = 129
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 3 VIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHD 62
V+ E+G++AW+ L+ D +++T+ MP ++G+ L++K+ + K IP+IM+++
Sbjct: 33 VLEAEHGVEAWEKLDANADT-KVLITDWNMPEMNGLDLVKKVRSDSRFKEIPIIMITAEG 91
Query: 63 SMSIVFKCLSKGAVYFLVKPI 83
+ V L G ++VKP
Sbjct: 92 GKAEVITALKAGVNNYIVKPF 112
>pdb|3H1F|A Chain A, Crystal Structure Of Chey Mutant D53a Of Helicobacter
Pylori
Length = 129
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 3 VIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHD 62
V+ E+G++AW+ L+ D +++T MP ++G+ L++K+ + K IP+IM+++
Sbjct: 33 VLEAEHGVEAWEKLDANADT-KVLITAWNMPEMNGLDLVKKVRSDSRFKEIPIIMITTEG 91
Query: 63 SMSIVFKCLSKGAVYFLVKPI 83
+ V L G ++VKP
Sbjct: 92 GKAEVITALKAGVNNYIVKPF 112
>pdb|3JTE|A Chain A, Crystal Structure Of Response Regulator Receiver Domain
Protein From Clostridium Thermocellum
Length = 143
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 48/86 (55%), Gaps = 2/86 (2%)
Query: 3 VIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHD 62
V+ + + +I + + ID+V+T++ MP LSG+ +LR+I K ++ VI+++ H
Sbjct: 30 VLTASSSTEGLRIFTENCNSIDVVITDMKMPKLSGMDILREI--KKITPHMAVIILTGHG 87
Query: 63 SMSIVFKCLSKGAVYFLVKPIRKNEL 88
+ + +GA +L KP+ +L
Sbjct: 88 DLDNAILAMKEGAFEYLRKPVTAQDL 113
>pdb|3GT7|A Chain A, Crystal Structure Of Signal Receiver Domain Of Signal
Transduction Histidine Kinase From Syntrophus
Aciditrophicus
Length = 154
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 6 VENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMS 65
V NG +A + L + + DL++++VLMP + G L R + + IPVI+++
Sbjct: 37 VRNGREAVRFLS--LTRPDLIISDVLMPEMDGYALCRWLKGQPDLRTIPVILLTILSDPR 94
Query: 66 IVFKCLSKGAVYFLVKP 82
V + L GA F+ KP
Sbjct: 95 DVVRSLECGADDFITKP 111
>pdb|1L5Y|A Chain A, Crystal Structure Of Mg2+ / Bef3-bound Receiver Domain Of
Sinorhizobium Meliloti Dctd
pdb|1L5Y|B Chain B, Crystal Structure Of Mg2+ / Bef3-bound Receiver Domain Of
Sinorhizobium Meliloti Dctd
pdb|1L5Z|A Chain A, Crystal Structure Of The E121k Substitution Of The
Receiver Domain Of Sinorhizobium Meliloti Dctd
Length = 155
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 25 LVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIR 84
+V++++ MP + G+ L RKI+ ++P+I+++ H + + + + GA F+ KP
Sbjct: 50 IVISDIRMPGMDGLALFRKILALDP--DLPMILVTGHGDIPMAVQAIQDGAYDFIAKPFA 107
Query: 85 KNELQNLWQHVWRK 98
+ L + +K
Sbjct: 108 ADRLVQSARRAEKK 121
>pdb|1J56|A Chain A, Minimized Average Structure Of Beryllofluoride-Activated
Ntrc Receiver Domain: Model Structure Incorporating
Active Site Contacts
pdb|1KRX|A Chain A, Solution Structure Of Beryllofluoride-Activated Ntrc
Receiver Domain: Model Structures Incorporating Active
Site Contacts
pdb|1NTR|A Chain A, Solution Structure Of The N-Terminal Receiver Domain Of
Ntrc
Length = 124
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 24 DLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPI 83
D++L+++ MP + G+ LL++I +PVI+M++H + +GA +L KP
Sbjct: 49 DVLLSDIRMPGMDGLALLKQIKQRHPM--LPVIIMTAHSDLDAAVSAYQQGAFDYLPKPF 106
Query: 84 RKNE 87
+E
Sbjct: 107 DIDE 110
>pdb|1DC7|A Chain A, Structure Of A Transiently Phosphorylated "switch" In
Bacterial Signal Transduction
Length = 124
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 24 DLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPI 83
D++L+++ MP + G+ LL++I +PVI+M++H + +GA +L KP
Sbjct: 49 DVLLSDIRMPGMDGLALLKQIKQRHPM--LPVIIMTAHSDLDAAVSAYQQGAFDYLPKPF 106
Query: 84 RKNE 87
+E
Sbjct: 107 DIDE 110
>pdb|1KRW|A Chain A, Solution Structure And Backbone Dynamics Of
Beryllofluoride- Activated Ntrc Receiver Domain
Length = 124
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 24 DLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPI 83
D++L+++ MP + G+ LL++I +PVI+M++H + +GA +L KP
Sbjct: 49 DVLLSDIRMPGMDGLALLKQIKQRHPM--LPVIIMTAHSDLDAAVSAYQQGAFDYLPKPF 106
Query: 84 RKNE 87
+E
Sbjct: 107 DIDE 110
>pdb|3HZH|A Chain A, Crystal Structure Of The Chex-Chey-Bef3-Mg+2 Complex From
Borrelia Burgdorferi
Length = 157
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 23 IDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKP 82
ID+V + MP + GI L IM KN VIM+S+ +V CL KGA F+VKP
Sbjct: 84 IDIVTLXITMPKMDGITCLSNIMEFD--KNARVIMISALGKEQLVKDCLIKGAKTFIVKP 141
Query: 83 IRKNELQNLWQHVWRK 98
+ + ++ V+ K
Sbjct: 142 LDRAKVLQRVMSVFVK 157
>pdb|1QKK|A Chain A, Crystal Structure Of The Receiver Domain And Linker Region
Of Dctd From Sinorhizobium Meliloti
Length = 155
Score = 43.1 bits (100), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 25 LVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIR 84
+V++++ MP + G+ L RKI+ ++P+I+++ H + + + + GA F+ KP
Sbjct: 50 IVISDIRMPGMDGLALFRKILALDP--DLPMILVTGHGDIPMAVQAIQDGAYDFIAKPFA 107
Query: 85 KNELQNLWQHVWRK 98
+ L + K
Sbjct: 108 ADRLVQSARRAEEK 121
>pdb|1DZ3|A Chain A, Domain-Swapping In The Sporulation Response Regulator
Spo0a
Length = 130
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 52/91 (57%), Gaps = 8/91 (8%)
Query: 8 NGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIP-VIMMSSHDSMSI 66
NG ++LE+ + D++L +++MP L G+ +L +I ++ P VIM+++ +
Sbjct: 36 NGQDCLQMLEE--KRPDILLLDIIMPHLDGLAVLERI--RAGFEHQPNVIMLTAFGQEDV 91
Query: 67 VFKCLSKGAVYFLVKPIRKNELQNLWQHVWR 97
K + GA YF++KP +++NL H+ +
Sbjct: 92 TKKAVELGASYFILKPF---DMENLAHHIRQ 119
>pdb|3TO5|A Chain A, High Resolution Structure Of Chey3 From Vibrio Cholerae
Length = 134
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 6 VENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMS 65
++GL A +L+ D V+T+ MP + GI LL+ I + K++PV+M+++
Sbjct: 43 ADDGLTALPMLKK--GDFDFVVTDWNMPGMQGIDLLKNIRADEELKHLPVLMITAEAKRE 100
Query: 66 IVFKCLSKGAVYFLVKPIRKNELQNLWQHVWRKC 99
+ + G ++VKP L+ ++ +
Sbjct: 101 QIIEAAQAGVNGYIVKPFTAATLKEKLDKIFERL 134
>pdb|3DGE|C Chain C, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
pdb|3DGE|D Chain D, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
pdb|3DGF|C Chain C, Structure Of A Histidine Kinase-Response Regulator Complex
Reveals Insights Into Two-Component Signaling And A
Novel Cis- Autophosphorylation Mechanism
Length = 122
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 3 VIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHD 62
VI ENG A + L + DL++ +++MP + G +L+K+ + K IPVI++++
Sbjct: 29 VIEAENGQIALEKLSEFTP--DLIVLDIMMPVMDGFTVLKKLQEKEEWKRIPVIVLTAKG 86
Query: 63 SMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHV 95
LS GA + KP ++ +H+
Sbjct: 87 GEEDESLALSLGARKVMRKPFSPSQFIEEVKHL 119
>pdb|1DC8|A Chain A, Structure Of A Transiently Phosphorylated "switch" In
Bacterial Signal Transduction
Length = 124
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 24 DLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPI 83
D++L+ + MP + G+ LL++I +PVI+M++H + +GA +L KP
Sbjct: 49 DVLLSXIRMPGMDGLALLKQIKQRHPM--LPVIIMTAHSDLDAAVSAYQQGAFDYLPKPF 106
Query: 84 RKNE 87
+E
Sbjct: 107 DIDE 110
>pdb|2JB9|A Chain A, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D10a And D53e.
pdb|2JB9|B Chain B, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D10a And D53e
Length = 127
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%)
Query: 24 DLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPI 83
DL+L E ++P SGI ++ + ++IPV+M+++ + L GA ++ KP
Sbjct: 48 DLILLEWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPF 107
Query: 84 RKNELQNLWQHVWRK 98
EL + V R+
Sbjct: 108 SPKELVARIKAVMRR 122
>pdb|3T6K|A Chain A, Crystal Structure Of A Hypothetical Response Regulator
(Caur_3799) From Chloroflexus Aurantiacus J-10-Fl At
1.86 A Resolution
pdb|3T6K|B Chain B, Crystal Structure Of A Hypothetical Response Regulator
(Caur_3799) From Chloroflexus Aurantiacus J-10-Fl At
1.86 A Resolution
Length = 136
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 17 EDLMDQI-----DLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCL 71
E+ + QI D ++ +VL+P + G L +++ H K +P++ +++ +S
Sbjct: 38 EEALQQIYKNLPDALICDVLLPGIDGYTLCKRVRQHPLTKTLPILXLTAQGDISAKIAGF 97
Query: 72 SKGAVYFLVKPIRKNEL 88
GA +L KP EL
Sbjct: 98 EAGANDYLAKPFEPQEL 114
>pdb|3LUA|A Chain A, Crystal Structure Of A Signal Receiver Domain Of Two
Component Signal Transduction (Histidine Kinase) From
Clostridium Thermocellum
Length = 140
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
Query: 4 IAVENGLQAWKILEDLMDQIDLVLTEVLMPCL-SGIGLLRKIMNHKTCKNIPVIMMSSHD 62
I VEN + + I +DL D I L++ ++ P G+ +L I N+ N PVI+ + D
Sbjct: 33 IEVENLKKFYSIFKDL-DSITLIIXDIAFPVEKEGLEVLSAIRNNSRTANTPVIIATKSD 91
Query: 63 SMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVWRKCH 100
+ L +++KP L+N + V + C
Sbjct: 92 NPGYRHAALKFKVSDYILKPYPTKRLENSVRSVLKICQ 129
>pdb|1QMP|A Chain A, Phosphorylated Aspartate In The Crystal Structure Of The
Sporulation Response Regulator, Spo0a
pdb|1QMP|B Chain B, Phosphorylated Aspartate In The Crystal Structure Of The
Sporulation Response Regulator, Spo0a
pdb|1QMP|C Chain C, Phosphorylated Aspartate In The Crystal Structure Of The
Sporulation Response Regulator, Spo0a
pdb|1QMP|D Chain D, Phosphorylated Aspartate In The Crystal Structure Of The
Sporulation Response Regulator, Spo0a
Length = 130
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 51/91 (56%), Gaps = 8/91 (8%)
Query: 8 NGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIP-VIMMSSHDSMSI 66
NG ++LE+ + D++L ++MP L G+ +L +I ++ P VIM+++ +
Sbjct: 36 NGQDCLQMLEE--KRPDILLLXIIMPHLDGLAVLERI--RAGFEHQPNVIMLTAFGQEDV 91
Query: 67 VFKCLSKGAVYFLVKPIRKNELQNLWQHVWR 97
K + GA YF++KP +++NL H+ +
Sbjct: 92 TKKAVELGASYFILKPF---DMENLAHHIRQ 119
>pdb|3GL9|A Chain A, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|B Chain B, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|C Chain C, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|D Chain D, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
Length = 122
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Query: 3 VIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHD 62
VI ENG A + L + DL++ ++MP + G +L+K+ + K IPVI++++
Sbjct: 29 VIEAENGQIALEKLSEFTP--DLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPVIVLTAKG 86
Query: 63 SMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHV 95
LS GA + KP ++ +H+
Sbjct: 87 GEEDESLALSLGARKVMRKPFSPSQFIEEVKHL 119
>pdb|1DBW|A Chain A, Crystal Structure Of Fixj-N
pdb|1DBW|B Chain B, Crystal Structure Of Fixj-N
pdb|1DCK|A Chain A, Structure Of Unphosphorylated Fixj-N Complexed With Mn2+
pdb|1DCK|B Chain B, Structure Of Unphosphorylated Fixj-N Complexed With Mn2+
pdb|1DCM|A Chain A, Structure Of Unphosphorylated Fixj-N With An Atypical
Conformer (Monomer A)
pdb|1DCM|B Chain B, Structure Of Unphosphorylated Fixj-N With An Atypical
Conformer (Monomer A)
Length = 126
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 25 LVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIR 84
+++T++ MP +SG+ LLR + + K NIP I+++ H + + + + GAV F+ KP
Sbjct: 50 VLVTDLRMPDMSGVELLRNLGDLKI--NIPSIVITGHGDVPMAVEAMKAGAVDFIEKPFE 107
>pdb|1ZES|A Chain A, Bef3- Activated Phob Receiver Domain
pdb|1ZES|B Chain B, Bef3- Activated Phob Receiver Domain
pdb|1ZES|C Chain C, Bef3- Activated Phob Receiver Domain
Length = 125
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 38/75 (50%)
Query: 24 DLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPI 83
DL+L + ++P SGI ++ + ++IPV+M+++ + L GA ++ KP
Sbjct: 48 DLILLDWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPF 107
Query: 84 RKNELQNLWQHVWRK 98
EL + V R+
Sbjct: 108 SPKELVARIKAVMRR 122
>pdb|1B00|A Chain A, Phob Receiver Domain From Escherichia Coli
pdb|1B00|B Chain B, Phob Receiver Domain From Escherichia Coli
pdb|2IYN|A Chain A, The Co-Factor-Induced Pre-Active Conformation In Phob
pdb|2IYN|B Chain B, The Co-Factor-Induced Pre-Active Conformation In Phob
pdb|2IYN|C Chain C, The Co-Factor-Induced Pre-Active Conformation In Phob
Length = 127
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 38/75 (50%)
Query: 24 DLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPI 83
DL+L + ++P SGI ++ + ++IPV+M+++ + L GA ++ KP
Sbjct: 48 DLILLDWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPF 107
Query: 84 RKNELQNLWQHVWRK 98
EL + V R+
Sbjct: 108 SPKELVARIKAVMRR 122
>pdb|3LUF|A Chain A, Structure Of Probable Two-Component System Response
RegulatorGGDEF DOMAIN PROTEIN
pdb|3LUF|B Chain B, Structure Of Probable Two-Component System Response
RegulatorGGDEF DOMAIN PROTEIN
pdb|3MF4|A Chain A, Crystal Structure Of Putative Two-Component System
Response RegulatorGGDEF DOMAIN PROTEIN
pdb|3MF4|B Chain B, Crystal Structure Of Putative Two-Component System
Response RegulatorGGDEF DOMAIN PROTEIN
Length = 259
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%)
Query: 23 IDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKP 82
I LVL + P + GI L+R + + + + +I +S D + + L +GA FL +P
Sbjct: 170 IRLVLVDYYXPEIDGISLVRXLRERYSKQQLAIIGISVSDKRGLSARYLKQGANDFLNQP 229
Query: 83 IRKNELQ 89
ELQ
Sbjct: 230 FEPEELQ 236
>pdb|3I5A|A Chain A, Crystal Structure Of Full-Length Wpsr From Pseudomonas
Syringae
Length = 334
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 36/57 (63%)
Query: 25 LVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVK 81
++L +++MP L G+ L+R+ ++ ++IP+I++S+ + I + GA +LVK
Sbjct: 64 VILQDLVMPGLDGLTLVREYRSNPLTRDIPIIVLSTKEDPLIKSAAFAAGANDYLVK 120
>pdb|3Q15|C Chain C, Crystal Structure Of Raph Complexed With Spo0f
pdb|3Q15|D Chain D, Crystal Structure Of Raph Complexed With Spo0f
Length = 126
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 49/83 (59%), Gaps = 4/83 (4%)
Query: 8 NGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIV 67
NGLQA I+ ++ DLVL ++ +P + GI +L+++ +NI VI+M+++ + ++
Sbjct: 37 NGLQALDIVTK--ERPDLVLLDMKIPGMDGIEILKRM--KVIDENIRVIIMTAYGELDMI 92
Query: 68 FKCLSKGAVYFLVKPIRKNELQN 90
+ GA+ KP +E+++
Sbjct: 93 QESKELGALTHFAKPFDIDEIRD 115
>pdb|1D5W|A Chain A, Phosphorylated Fixj Receiver Domain
pdb|1D5W|B Chain B, Phosphorylated Fixj Receiver Domain
pdb|1D5W|C Chain C, Phosphorylated Fixj Receiver Domain
Length = 126
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 25 LVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIR 84
+++T + MP +SG+ LLR + + K NIP I+++ H + + + + GAV F+ KP
Sbjct: 50 VLVTXLRMPDMSGVELLRNLGDLKI--NIPSIVITGHGDVPMAVEAMKAGAVDFIEKPFE 107
>pdb|1SRR|A Chain A, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1SRR|B Chain B, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1SRR|C Chain C, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1PEY|A Chain A, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
pdb|1PEY|B Chain B, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
pdb|1PEY|C Chain C, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
Length = 124
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 49/83 (59%), Gaps = 4/83 (4%)
Query: 8 NGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIV 67
NGLQA I+ ++ DLVL ++ +P + GI +L+++ +NI VI+M+++ + ++
Sbjct: 35 NGLQALDIVTK--ERPDLVLLDMKIPGMDGIEILKRM--KVIDENIRVIIMTAYGELDMI 90
Query: 68 FKCLSKGAVYFLVKPIRKNELQN 90
+ GA+ KP +E+++
Sbjct: 91 QESKELGALTHFAKPFDIDEIRD 113
>pdb|1F51|E Chain E, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|F Chain F, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|G Chain G, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|H Chain H, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
Length = 119
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 49/83 (59%), Gaps = 4/83 (4%)
Query: 8 NGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIV 67
NGLQA I+ ++ DLVL ++ +P + GI +L+++ +NI VI+M+++ + ++
Sbjct: 33 NGLQALDIV--TKERPDLVLLDMKIPGMDGIEILKRM--KVIDENIRVIIMTAYGELDMI 88
Query: 68 FKCLSKGAVYFLVKPIRKNELQN 90
+ GA+ KP +E+++
Sbjct: 89 QESKELGALTHFAKPFDIDEIRD 111
>pdb|1PUX|A Chain A, Nmr Solution Structure Of Bef3-Activated Spo0f, 20
Conformers
pdb|1FSP|A Chain A, Nmr Solution Structure Of Bacillus Subtilis Spo0f Protein,
20 Structures
pdb|1NAT|A Chain A, Crystal Structure Of Spoof From Bacillus Subtilis
pdb|2FSP|A Chain A, Nmr Solution Structure Of Bacillus Subtilis Spo0f Protein,
Minimized Average Structure
Length = 124
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 49/83 (59%), Gaps = 4/83 (4%)
Query: 8 NGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIV 67
NGLQA I+ ++ DLVL ++ +P + GI +L+++ +NI VI+M+++ + ++
Sbjct: 35 NGLQALDIVTK--ERPDLVLLDMKIPGMDGIEILKRM--KVIDENIRVIIMTAYGELDMI 90
Query: 68 FKCLSKGAVYFLVKPIRKNELQN 90
+ GA+ KP +E+++
Sbjct: 91 QESKELGALTHFAKPFDIDEIRD 113
>pdb|2JVI|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant H101a From Bacillus Subtilis
Length = 132
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 49/83 (59%), Gaps = 4/83 (4%)
Query: 8 NGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIV 67
NGLQA I+ ++ DLVL ++ +P + GI +L+++ +NI VI+M+++ + ++
Sbjct: 35 NGLQALDIVTK--ERPDLVLLDMKIPGMDGIEILKRM--KVIDENIRVIIMTAYGELDMI 90
Query: 68 FKCLSKGAVYFLVKPIRKNELQN 90
+ GA+ KP +E+++
Sbjct: 91 QESKELGALTAFAKPFDIDEIRD 113
>pdb|1MVO|A Chain A, Crystal Structure Of The Phop Receiver Domain From
Bacillus Subtilis
Length = 136
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 48/98 (48%), Gaps = 4/98 (4%)
Query: 3 VIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHD 62
VI +G +A K E ++ DL++ +V++P L GI + +++ K P++M+++ D
Sbjct: 30 VITASDGEEALKKAE--TEKPDLIVLDVMLPKLDGIEVCKQLRQQKLM--FPILMLTAKD 85
Query: 63 SMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVWRKCH 100
L GA ++ KP E+ + + R+
Sbjct: 86 EEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRSE 123
>pdb|3BRE|A Chain A, Crystal Structure Of P.Aeruginosa Pa3702
pdb|3BRE|B Chain B, Crystal Structure Of P.Aeruginosa Pa3702
Length = 358
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 11/79 (13%)
Query: 3 VIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHD 62
+AV N ++ IL+DL +MP + G+ LL + ++IP+I++S+ +
Sbjct: 55 AVAVANQIKPTVILQDL-----------VMPGVDGLTLLAAYRGNPATRDIPIIVLSTKE 103
Query: 63 SMSIVFKCLSKGAVYFLVK 81
++ + GA +LVK
Sbjct: 104 EPTVKSAAFAAGANDYLVK 122
>pdb|3FFX|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
pdb|3FFX|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
Length = 128
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 35/74 (47%)
Query: 25 LVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIR 84
V+++ MP + G+ LL+ I +PV+M+++H + GA ++VKP
Sbjct: 52 FVISDWRMPNMDGLELLKTIRADGAMSALPVLMVTAHAKKENIIAAAQAGASGYVVKPFT 111
Query: 85 KNELQNLWQHVWRK 98
L+ ++ K
Sbjct: 112 AATLEEKLNKIFEK 125
>pdb|3HEB|A Chain A, Crystal Structure Of Response Regulator Receiver Domain
From Rhodospirillum Rubrum
pdb|3HEB|B Chain B, Crystal Structure Of Response Regulator Receiver Domain
From Rhodospirillum Rubrum
Length = 152
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 35/66 (53%)
Query: 25 LVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIR 84
LVL ++ +P +GI +L+ + + + PV+++++ D + +C GA ++ KP+
Sbjct: 62 LVLLDLNLPDXTGIDILKLVKENPHTRRSPVVILTTTDDQREIQRCYDLGANVYITKPVN 121
Query: 85 KNELQN 90
N
Sbjct: 122 YENFAN 127
>pdb|2JVJ|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant I90a From Bacillus Subtilis
Length = 132
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 48/83 (57%), Gaps = 4/83 (4%)
Query: 8 NGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIV 67
NGLQA I+ ++ DLVL ++ +P + GI +L+++ +NI VI+M+++ + +
Sbjct: 35 NGLQALDIVTK--ERPDLVLLDMKIPGMDGIEILKRM--KVIDENIRVIIMTAYGELDMA 90
Query: 68 FKCLSKGAVYFLVKPIRKNELQN 90
+ GA+ KP +E+++
Sbjct: 91 QESKELGALTHFAKPFDIDEIRD 113
>pdb|2FTK|E Chain E, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|F Chain F, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|G Chain G, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|H Chain H, Berylloflouride Spo0f Complex With Spo0b
Length = 124
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 48/83 (57%), Gaps = 4/83 (4%)
Query: 8 NGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIV 67
NGLQA I+ ++ DLVL + +P + GI +L+++ +NI VI+M+++ + ++
Sbjct: 35 NGLQALDIVTK--ERPDLVLLXMKIPGMDGIEILKRM--KVIDENIRVIIMTAYGELDMI 90
Query: 68 FKCLSKGAVYFLVKPIRKNELQN 90
+ GA+ KP +E+++
Sbjct: 91 QESKELGALTHFAKPFDIDEIRD 113
>pdb|3TMY|A Chain A, Chey From Thermotoga Maritima (Mn-Iii)
pdb|3TMY|B Chain B, Chey From Thermotoga Maritima (Mn-Iii)
pdb|4TMY|A Chain A, Chey From Thermotoga Maritima (mg-iv)
pdb|4TMY|B Chain B, Chey From Thermotoga Maritima (mg-iv)
pdb|1TMY|A Chain A, Chey From Thermotoga Maritima (Apo-I)
pdb|2TMY|A Chain A, Chey From Thermotoga Maritima (Apo-Ii)
Length = 120
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
Query: 8 NGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIV 67
NG +A + ++L + D+V ++ MP ++GI +++IM K N +I+ S+ ++V
Sbjct: 35 NGREAVEKYKEL--KPDIVTMDITMPEMNGIDAIKEIM--KIDPNAKIIVCSAMGQQAMV 90
Query: 68 FKCLSKGAVYFLVKPIRKNELQNLWQHVWR 97
+ + GA F+VKP + + + V +
Sbjct: 91 IEAIKAGAKDFIVKPFQPSRVVEALNKVSK 120
>pdb|3M6M|D Chain D, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
pdb|3M6M|E Chain E, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
pdb|3M6M|F Chain F, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
Length = 143
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 12 AWKILEDLMDQ-IDLVLTEVLMPCLSGIGLLR--KIMNHKTCKNIPVIMMSSHDSMSIVF 68
A ++L+ + ++ D V+ ++ MP ++G+ +L+ ++M + PV+++S+ + +
Sbjct: 47 AEQVLDAMAEEDYDAVIVDLHMPGMNGLDMLKQLRVMQASGMRYTPVVVLSADVTPEAIR 106
Query: 69 KCLSKGAVYFLVKPI 83
C GA FL KP+
Sbjct: 107 ACEQAGARAFLAKPV 121
>pdb|3F6P|A Chain A, Crystal Structure Of Unphosphorelated Receiver Domain Of
Yycf
Length = 120
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 47/81 (58%), Gaps = 5/81 (6%)
Query: 8 NGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIV 67
+G +A +++E+L Q DL+L ++++P G+ + R++ + ++P+IM+++ DS
Sbjct: 34 DGNEAVEMVEEL--QPDLILLDIMLPNKDGVEVCREV---RKKYDMPIIMLTAKDSEIDK 88
Query: 68 FKCLSKGAVYFLVKPIRKNEL 88
L GA ++ KP EL
Sbjct: 89 VIGLEIGADDYVTKPFSTREL 109
>pdb|3EUL|A Chain A, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
pdb|3EUL|B Chain B, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
pdb|3EUL|C Chain C, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
pdb|3EUL|D Chain D, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
Length = 152
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 24 DLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPI 83
D+ L + MP + G + + +++ V+++S+HD +IV++ L +GA FL+K
Sbjct: 63 DVALLDYRMPGMDGAQVAAAVRSYELPTR--VLLISAHDEPAIVYQALQQGAAGFLLKDS 120
Query: 84 RKNEL 88
+ E+
Sbjct: 121 TRTEI 125
>pdb|1YIO|A Chain A, Crystallographic Structure Of Response Regulator Styr From
Pseudomonas Fluorescens
pdb|1ZN2|A Chain A, Low Resolution Structure Of Response Regulator Styr
Length = 208
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 32 MPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNEL 88
MP +SGI L ++ IP++ +++H + + + + GA+ FL KP + L
Sbjct: 58 MPGMSGIELQEQLT--AISDGIPIVFITAHGDIPMTVRAMKAGAIEFLPKPFEEQAL 112
>pdb|2ZWM|A Chain A, Crystal Structure Of Yycf Receiver Domain From Bacillus
Subtilis
pdb|2ZWM|B Chain B, Crystal Structure Of Yycf Receiver Domain From Bacillus
Subtilis
Length = 130
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 47/81 (58%), Gaps = 5/81 (6%)
Query: 8 NGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIV 67
+G +A +++E+L Q DL+L ++++P G+ + R++ + ++P+IM+++ DS
Sbjct: 34 DGNEAVEMVEEL--QPDLILLDIMLPNKDGVEVCREV---RKKYDMPIIMLTAKDSEIDK 88
Query: 68 FKCLSKGAVYFLVKPIRKNEL 88
L GA ++ KP EL
Sbjct: 89 VIGLEIGADDYVTKPFSTREL 109
>pdb|3Q9S|A Chain A, Crystal Structure Of Rra(1-215) From Deinococcus
Radiodurans
Length = 249
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 21 DQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80
D DL+L ++ +P G +++++ + +P+I++++ D++ + L GA +L+
Sbjct: 80 DHPDLILLDLGLPDFDGGDVVQRLRKNSA---LPIIVLTARDTVEEKVRLLGLGADDYLI 136
Query: 81 KPIRKNEL 88
KP +EL
Sbjct: 137 KPFHPDEL 144
>pdb|1U0S|Y Chain Y, Chemotaxis Kinase Chea P2 Domain In Complex With Response
Regulator Chey From The Thermophile Thermotoga Maritima
Length = 118
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Query: 8 NGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIV 67
NG +A + ++L + D+V ++ MP ++GI +++IM K N +I+ S+ ++V
Sbjct: 34 NGREAVEKYKEL--KPDIVTMDITMPEMNGIDAIKEIM--KIDPNAKIIVCSAMGQQAMV 89
Query: 68 FKCLSKGAVYFLVKPIRKNELQNLWQHV 95
+ + GA F+VKP + + + V
Sbjct: 90 IEAIKAGAKDFIVKPFQPSRVVEALNKV 117
>pdb|2JVK|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant L66a From Bacillus Subtilis
Length = 132
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 48/83 (57%), Gaps = 4/83 (4%)
Query: 8 NGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIV 67
NGLQA I+ ++ DLVL ++ +P + GI + +++ +NI VI+M+++ + ++
Sbjct: 35 NGLQALDIVTK--ERPDLVLLDMKIPGMDGIEIAKRM--KVIDENIRVIIMTAYGELDMI 90
Query: 68 FKCLSKGAVYFLVKPIRKNELQN 90
+ GA+ KP +E+++
Sbjct: 91 QESKELGALTHFAKPFDIDEIRD 113
>pdb|3NHZ|A Chain A, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|B Chain B, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|C Chain C, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|D Chain D, Structure Of N-Terminal Domain Of Mtra
Length = 125
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 47/86 (54%), Gaps = 7/86 (8%)
Query: 2 AVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSH 61
AVI +G QA + +L + DLVL ++++P ++GI + R + + +P++M+++
Sbjct: 33 AVIG--DGTQALTAVREL--RPDLVLLDLMLPGMNGIDVCRVL---RADSGVPIVMLTAK 85
Query: 62 DSMSIVFKCLSKGAVYFLVKPIRKNE 87
V L GA +++KP + E
Sbjct: 86 TDTVDVVLGLESGADDYIMKPFKPKE 111
>pdb|3T8Y|A Chain A, Crystal Structure Of The Response Regulator Domain Of
Thermotoga Maritima Cheb
pdb|3T8Y|B Chain B, Crystal Structure Of The Response Regulator Domain Of
Thermotoga Maritima Cheb
Length = 164
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 7/78 (8%)
Query: 7 ENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSS--HDSM 64
++GL+A + +L + D++ ++ MP L+GI L+ IM + VIM+SS +
Sbjct: 58 KDGLEAVEKAIEL--KPDVITMDIEMPNLNGIEALKLIMKKAPTR---VIMVSSLTEEGA 112
Query: 65 SIVFKCLSKGAVYFLVKP 82
+I + L GAV F+ KP
Sbjct: 113 AITIEALRNGAVDFITKP 130
>pdb|3FGZ|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
pdb|3FGZ|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
Length = 128
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 35/75 (46%)
Query: 25 LVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIR 84
V+++ +MP + G+ LL+ I +PV+M+++ + GA ++VKP
Sbjct: 52 FVISDWMMPNMDGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGASGYVVKPFT 111
Query: 85 KNELQNLWQHVWRKC 99
L+ ++ K
Sbjct: 112 AATLEEKLNKIFEKL 126
>pdb|1S8N|A Chain A, Crystal Structure Of Rv1626 From Mycobacterium
Tuberculosis
pdb|1SD5|A Chain A, Crystal Structure Of Rv1626
Length = 205
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 8 NGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIV 67
+G +A ++ E + + DLV+ +V MP GI +I + + P++++++ +V
Sbjct: 46 DGQEAVELAE--LHKPDLVIMDVKMPRRDGIDAASEIASKRIA---PIVVLTAFSQRDLV 100
Query: 68 FKCLSKGAVYFLVKPIRKNEL 88
+ GA+ +LVKP ++L
Sbjct: 101 ERARDAGAMAYLVKPFSISDL 121
>pdb|2ZAY|A Chain A, Crystal Structure Of Response Regulator From
Desulfuromonas Acetoxidans
pdb|2ZAY|B Chain B, Crystal Structure Of Response Regulator From
Desulfuromonas Acetoxidans
Length = 147
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%)
Query: 25 LVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPI 83
L++TE MP +SG+ L + + +IPVI +S + + L G + F+ KP+
Sbjct: 55 LIITEANMPKISGMDLFNSLKKNPQTASIPVIALSGRATAKEEAQLLDMGFIDFIAKPV 113
>pdb|2JBA|A Chain A, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D53a And Y102c
Length = 127
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%)
Query: 24 DLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPI 83
DL+L ++P SGI ++ + ++IPV+M+++ + L GA + KP
Sbjct: 48 DLILLAWMLPGGSGIQFIKHLRRESMTRDIPVVMLTARGEEEDRVRGLETGADDCITKPF 107
Query: 84 RKNELQNLWQHVWRK 98
EL + V R+
Sbjct: 108 SPKELVARIKAVMRR 122
>pdb|3EOD|A Chain A, Crystal Structure Of N-Terminal Domain Of E. Coli Rssb
Length = 130
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 43/73 (58%), Gaps = 4/73 (5%)
Query: 24 DLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPI 83
DL++ ++ MP ++G+ LL I N PV+++S+ ++M+ + K L G L+KP+
Sbjct: 53 DLMICDIAMPRMNGLKLLEHIRNRG--DQTPVLVISATENMADIAKALRLGVEDVLLKPV 110
Query: 84 RKNELQNLWQHVW 96
+ +L L + V+
Sbjct: 111 K--DLNRLREMVF 121
>pdb|2OQR|A Chain A, The Structure Of The Response Regulator Regx3 From
Mycobacterium Tuberculosis
Length = 230
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 24 DLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPI 83
D+VL ++++P +SG + +++ + ++PVIM+++ DS L GA ++ KP
Sbjct: 50 DIVLLDLMLPGMSGTDVCKQL---RARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPY 106
Query: 84 RKNELQNLWQHVWRK 98
EL + V R+
Sbjct: 107 SARELIARIRAVLRR 121
>pdb|2JBA|B Chain B, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D53a And Y102c
Length = 127
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%)
Query: 24 DLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPI 83
DL+L ++P SGI ++ + ++IPV+M+++ + L GA + KP
Sbjct: 48 DLILLAWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDCITKPF 107
Query: 84 RKNELQNLWQHVWRK 98
EL + V R+
Sbjct: 108 SPKELVARIKAVMRR 122
>pdb|1HEY|A Chain A, Investigating The Structural Determinants Of The P21-Like
Triphosphate And Mg2+ Binding Site
Length = 128
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 40/94 (42%), Gaps = 11/94 (11%)
Query: 16 LEDLMDQID-----------LVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSM 64
+ED D +D V+++ MP + G+ LL+ I +PV+M+++
Sbjct: 32 VEDAEDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKK 91
Query: 65 SIVFKCLSKGAVYFLVKPIRKNELQNLWQHVWRK 98
+ GA ++VKP L+ ++ K
Sbjct: 92 ENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125
>pdb|3FFW|A Chain A, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
pdb|3FFW|B Chain B, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
Length = 128
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 35/74 (47%)
Query: 25 LVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIR 84
V+++ MP + G+ LL+ I +PV+M++++ + GA ++VKP
Sbjct: 52 FVISDWKMPNMDGLELLKTIRADGAMSALPVLMVTAYAKKENIIAAAQAGASGYVVKPFT 111
Query: 85 KNELQNLWQHVWRK 98
L+ ++ K
Sbjct: 112 AATLEEKLNKIFEK 125
>pdb|3RVN|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89y
pdb|3RVN|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89y
pdb|3RVO|A Chain A, Structure Of Chey-Mn2+ Complex With Substitutions At 59
And 89: N59d E89y
Length = 132
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 35/74 (47%)
Query: 25 LVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIR 84
V+++ MP + G+ LL+ I +PV+M++++ + GA ++VKP
Sbjct: 56 FVISDWDMPNMDGLELLKTIRADGAMSALPVLMVTAYAKKENIIAAAQAGASGYVVKPFT 115
Query: 85 KNELQNLWQHVWRK 98
L+ ++ K
Sbjct: 116 AATLEEKLNKIFEK 129
>pdb|3OLX|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
pdb|3OLX|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
Length = 129
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 34/75 (45%)
Query: 25 LVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIR 84
V+++ MP + G+ LL+ I +PV+M++S + GA ++VKP
Sbjct: 53 FVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTSEAKKENIIAAAQAGASGYVVKPFT 112
Query: 85 KNELQNLWQHVWRKC 99
L+ ++ K
Sbjct: 113 AATLEEKLNKIFEKL 127
>pdb|3F7N|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
pdb|3F7N|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
Length = 128
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 35/75 (46%)
Query: 25 LVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIR 84
V+++ +MP + G+ LL+ I +PV+M+++ + GA ++VKP
Sbjct: 52 FVISDWMMPNMDGLELLKTIRADGAMSALPVLMVTALAKKENIIAAAQAGASGYVVKPFT 111
Query: 85 KNELQNLWQHVWRKC 99
L+ ++ K
Sbjct: 112 AATLEEKLNKIFEKL 126
>pdb|1MIH|A Chain A, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation
Of The E. Coli Chemotaxis Response Regulator Chey
pdb|1MIH|B Chain B, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation
Of The E. Coli Chemotaxis Response Regulator Chey
Length = 129
Score = 35.8 bits (81), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 34/75 (45%)
Query: 25 LVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIR 84
V+++ MP + G+ LL+ I +PV+M+++ + GA ++VKP
Sbjct: 53 FVISDWRMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFT 112
Query: 85 KNELQNLWQHVWRKC 99
L+ ++ K
Sbjct: 113 AATLEEKLNKIFEKL 127
>pdb|1D4Z|A Chain A, Crystal Structure Of Chey-95iv, A Hyperactive Chey Mutant
Length = 128
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 30/67 (44%)
Query: 32 MPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNL 91
MP + G+ LL+ I +PV+M+++ V GA ++VKP L+
Sbjct: 59 MPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENVIAAAQAGASGYVVKPFTAATLEEK 118
Query: 92 WQHVWRK 98
++ K
Sbjct: 119 LNKIFEK 125
>pdb|1ZH2|A Chain A, Crystal Structure Of The Calcium-Bound Receiver Domain Of
Kdp Potassium Transport System Response Regulator Kdpe
pdb|1ZH2|B Chain B, Crystal Structure Of The Calcium-Bound Receiver Domain Of
Kdp Potassium Transport System Response Regulator Kdpe
pdb|1ZH4|A Chain A, Crystal Structure Of The Mg+2/bef3-bound Receiver Domain
Of Kdp Potassium Transport System Response Regulator
Kdpe
pdb|1ZH4|B Chain B, Crystal Structure Of The Mg+2/bef3-bound Receiver Domain
Of Kdp Potassium Transport System Response Regulator
Kdpe
Length = 121
Score = 35.8 bits (81), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 15 ILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKG 74
+LE + DL++ ++ +P GI +R + + +PVI++S+ S L G
Sbjct: 38 LLEAATRKPDLIILDLGLPDGDGIEFIRDL---RQWSAVPVIVLSARSEESDKIAALDAG 94
Query: 75 AVYFLVKPIRKNELQNLWQHVWRK 98
A +L KP ELQ + R+
Sbjct: 95 ADDYLSKPFGIGELQARLRVALRR 118
>pdb|2CHE|A Chain A, Structure Of The Mg2+-Bound Form Of Chey And Mechanism Of
Phosphoryl Transfer In Bacterial Chemotaxis
pdb|2CHF|A Chain A, Structure Of The Mg2+-Bound Form Of Chey And The Mechanism
Of Phosphoryl Transfer In Bacterial Chemotaxis
pdb|2PL9|A Chain A, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PL9|B Chain B, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PL9|C Chain C, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PMC|A Chain A, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|B Chain B, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|C Chain C, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|D Chain D, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
Length = 128
Score = 35.8 bits (81), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 30/68 (44%)
Query: 32 MPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNL 91
MP + G+ LL+ I +PV+M+++ + GA ++VKP L+
Sbjct: 59 MPNMDGLELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEK 118
Query: 92 WQHVWRKC 99
++ K
Sbjct: 119 LNKIFEKL 126
>pdb|1YMV|A Chain A, Signal Transduction Protein Chey Mutant With Phe 14
Replaced By Gly, Ser 15 Replaced By Gly, And Met 17
Replaced By Gly
Length = 129
Score = 35.8 bits (81), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 34/74 (45%)
Query: 25 LVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIR 84
V+++ MP + G+ LL+ I +PV+M+++ + GA ++VKP
Sbjct: 53 FVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFT 112
Query: 85 KNELQNLWQHVWRK 98
L+ ++ K
Sbjct: 113 AATLEEKLNKIFEK 126
>pdb|3RVJ|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89q
pdb|3RVJ|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89q
pdb|3RVK|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d E89q
Length = 132
Score = 35.8 bits (81), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 34/74 (45%)
Query: 25 LVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIR 84
V+++ MP + G+ LL+ I +PV+M+++ + GA ++VKP
Sbjct: 56 FVISDWDMPNMDGLELLKTIRADGAMSALPVLMVTAQAKKENIIAAAQAGASGYVVKPFT 115
Query: 85 KNELQNLWQHVWRK 98
L+ ++ K
Sbjct: 116 AATLEEKLNKIFEK 129
>pdb|2FKA|A Chain A, Crystal Structure Of Mg(2+) And Bef(3)(-)-Bound Chey In
Complex With Chez(200-214) Solved From A F432 Crystal
Grown In Caps (Ph 10.5)
pdb|2FLK|A Chain A, Crystal Structure Of Chey In Complex With Chez(200-214)
Solved From A F432 Crystal Grown In Caps (Ph 10.5)
pdb|2FLW|A Chain A, Crystal Structure Of Mg2+ And Bef3- Ound Chey In Complex
With Chez 200-214 Solved From A F432 Crystal Grown In
Hepes (ph 7.5)
pdb|2FMF|A Chain A, Crystal Structure Of Chey In Complex With Chez 200-214
Solved From A F432 Crystal Grown In Hepes (ph 7.5)
pdb|2FMH|A Chain A, Crystal Structure Of Mg2+ And Bef3- Bound Chey In Complex
With Chez 200-214 Solved From A F432 Crystal Grown In
Tris (Ph 8.4)
pdb|2FMI|A Chain A, Crystal Structure Of Chey In Complex With Chez 200-214
Solved From A F432 Crystal Grown In Tris (Ph 8.4)
pdb|2FMK|A Chain A, Crystal Structure Of Mg2+ And Bef3- Bound Chey In Complex
With Chez 200-214 Solved From A P2(1)2(1)2 Crystal Grown
In Mes (Ph 6.0)
Length = 129
Score = 35.4 bits (80), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 30/68 (44%)
Query: 32 MPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNL 91
MP + G+ LL+ I +PV+M+++ + GA ++VKP L+
Sbjct: 60 MPNMDGLELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEK 119
Query: 92 WQHVWRKC 99
++ K
Sbjct: 120 LNKIFEKL 127
>pdb|3CFY|A Chain A, Crystal Structure Of Signal Receiver Domain Of Putative
Luxo Repressor Protein From Vibrio Parahaemolyticus
Length = 137
Score = 35.4 bits (80), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 3 VIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIP--VIMMSS 60
+ VE G A + +E Q L++ ++ +P +SG +++ +IP VI+ ++
Sbjct: 31 IFHVETGRDAIQFIERSKPQ--LIILDLKLPDMSG----EDVLDWINQNDIPTSVIIATA 84
Query: 61 HDSMSIVFKCLSKGAVYFLVKPIRKNELQN 90
H S+ + + KGA FL KPI + L+
Sbjct: 85 HGSVDLAVNLIQKGAEDFLEKPINADRLKT 114
>pdb|2CHY|A Chain A, Three-Dimensional Structure Of Chey, The Response
Regulator Of Bacterial Chemotaxis
Length = 128
Score = 35.4 bits (80), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 30/67 (44%)
Query: 32 MPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNL 91
MP + G+ LL+ I +PV+M+++ + GA ++VKP L+
Sbjct: 59 MPNMDGLELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEK 118
Query: 92 WQHVWRK 98
++ K
Sbjct: 119 LNKIFEK 125
>pdb|3RVL|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVL|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVM|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVR|A Chain A, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVR|B Chain B, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVS|A Chain A, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
pdb|3RVS|B Chain B, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
Length = 132
Score = 35.4 bits (80), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 34/74 (45%)
Query: 25 LVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIR 84
V+++ MP + G+ LL+ I +PV+M+++ + GA ++VKP
Sbjct: 56 FVISDWDMPNMDGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGASGYVVKPFT 115
Query: 85 KNELQNLWQHVWRK 98
L+ ++ K
Sbjct: 116 AATLEEKLNKIFEK 129
>pdb|1AB5|A Chain A, Structure Of Chey Mutant F14n, V21t
pdb|1AB5|B Chain B, Structure Of Chey Mutant F14n, V21t
Length = 125
Score = 35.4 bits (80), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 34/74 (45%)
Query: 25 LVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIR 84
V+++ MP + G+ LL+ I +PV+M+++ + GA ++VKP
Sbjct: 49 FVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFT 108
Query: 85 KNELQNLWQHVWRK 98
L+ ++ K
Sbjct: 109 AATLEEKLNKIFEK 122
>pdb|1YMU|A Chain A, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
pdb|1YMU|B Chain B, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
Length = 130
Score = 35.4 bits (80), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 34/74 (45%)
Query: 25 LVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIR 84
V+++ MP + G+ LL+ I +PV+M+++ + GA ++VKP
Sbjct: 54 FVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFT 113
Query: 85 KNELQNLWQHVWRK 98
L+ ++ K
Sbjct: 114 AATLEEKLNKIFEK 127
>pdb|3FFT|A Chain A, Crystal Structure Of Chey Double Mutant F14e, E89r
Complexed With Bef3- And Mn2+
pdb|3FFT|B Chain B, Crystal Structure Of Chey Double Mutant F14e, E89r
Complexed With Bef3- And Mn2+
Length = 128
Score = 35.4 bits (80), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 34/74 (45%)
Query: 25 LVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIR 84
V+++ MP + G+ LL+ I +PV+M+++ + GA ++VKP
Sbjct: 52 FVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGASGYVVKPFT 111
Query: 85 KNELQNLWQHVWRK 98
L+ ++ K
Sbjct: 112 AATLEEKLNKIFEK 125
>pdb|1CEY|A Chain A, Assignments, Secondary Structure, Global Fold, And
Dynamics Of Chemotaxis Y Protein Using Three-And
Four-Dimensional Heteronuclear (13c,15n) Nmr
Spectroscopy
Length = 128
Score = 35.4 bits (80), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 34/75 (45%)
Query: 25 LVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIR 84
V+++ MP + G+ LL+ I +PV+M+++ + GA ++VKP
Sbjct: 52 FVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFT 111
Query: 85 KNELQNLWQHVWRKC 99
L+ ++ K
Sbjct: 112 AATLEEKLNKIFEKL 126
>pdb|1EAY|A Chain A, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1EAY|B Chain B, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1A0O|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|E Chain E, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|G Chain G, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1BDJ|A Chain A, Complex Structure Of Hpt Domain And Chey
pdb|1F4V|A Chain A, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|B Chain B, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|C Chain C, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1FFG|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFG|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFS|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFS|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFW|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FFW|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FQW|A Chain A, Crystal Structure Of Activated Chey
pdb|1FQW|B Chain B, Crystal Structure Of Activated Chey
pdb|2B1J|A Chain A, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|2B1J|B Chain B, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|1CHN|A Chain A, Magnesium Binding To The Bacterial Chemotaxis Protein Chey
Results In Large Conformational Changes Involving Its
Functional Surface
pdb|3CHY|A Chain A, Crystal Structure Of Escherichia Coli Chey Refined At 1.7-
Angstrom Resolution
pdb|2LP4|Y Chain Y, Solution Structure Of P1-CheyP2 COMPLEX IN BACTERIAL
CHEMOTAXIS
Length = 128
Score = 35.4 bits (80), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 34/74 (45%)
Query: 25 LVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIR 84
V+++ MP + G+ LL+ I +PV+M+++ + GA ++VKP
Sbjct: 52 FVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFT 111
Query: 85 KNELQNLWQHVWRK 98
L+ ++ K
Sbjct: 112 AATLEEKLNKIFEK 125
>pdb|1DJM|A Chain A, Solution Structure Of Bef3-Activated Chey From Escherichia
Coli
pdb|1KMI|Y Chain Y, Crystal Structure Of An E.Coli Chemotaxis Protein, Chez
Length = 129
Score = 35.4 bits (80), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 30/68 (44%)
Query: 32 MPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNL 91
MP + G+ LL+ I +PV+M+++ + GA ++VKP L+
Sbjct: 60 MPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEK 119
Query: 92 WQHVWRKC 99
++ K
Sbjct: 120 LNKIFEKL 127
>pdb|1CYE|A Chain A, Three Dimensional Structure Of Chemotactic Che Y Protein
In Aqueous Solution By Nuclear Magnetic Resonance
Methods
Length = 129
Score = 35.0 bits (79), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 34/75 (45%)
Query: 25 LVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIR 84
V+++ MP + G+ LL+ I +PV+M+++ + GA ++VKP
Sbjct: 53 FVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFT 112
Query: 85 KNELQNLWQHVWRKC 99
L+ ++ K
Sbjct: 113 AATLEEKLNKIFEKL 127
>pdb|3OLW|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
pdb|3OLW|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
Length = 129
Score = 35.0 bits (79), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 30/68 (44%)
Query: 32 MPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNL 91
MP + G+ LL+ I +PV+M+++ + GA ++VKP L+
Sbjct: 60 MPNMDGLELLKTIRADGAMSALPVLMVTTEAKKENIIAAAQAGASGYVVKPFTAATLEEK 119
Query: 92 WQHVWRKC 99
++ K
Sbjct: 120 LNKIFEKL 127
>pdb|1E6M|A Chain A, Two-Component Signal Transduction System D57a Mutant Of
Chey
Length = 128
Score = 35.0 bits (79), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 30/67 (44%)
Query: 32 MPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNL 91
MP + G+ LL+ I +PV+M+++ + GA ++VKP L+
Sbjct: 59 MPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEK 118
Query: 92 WQHVWRK 98
++ K
Sbjct: 119 LNKIFEK 125
>pdb|1JBE|A Chain A, 1.08 A Structure Of Apo-Chey Reveals Meta-Active
Conformation
Length = 128
Score = 35.0 bits (79), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 30/68 (44%)
Query: 32 MPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNL 91
MP + G+ LL+ I +PV+M+++ + GA ++VKP L+
Sbjct: 59 MPNMDGLELLKTIRAXXAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEK 118
Query: 92 WQHVWRKC 99
++ K
Sbjct: 119 LNKIFEKL 126
>pdb|3MYY|A Chain A, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
pdb|3MYY|B Chain B, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
Length = 128
Score = 35.0 bits (79), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 34/75 (45%)
Query: 25 LVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIR 84
V+++ MP + G+ LL+ I +PV+M+++ + GA ++VKP
Sbjct: 52 FVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFT 111
Query: 85 KNELQNLWQHVWRKC 99
L+ ++ K
Sbjct: 112 PATLEEKLNKIFEKL 126
>pdb|1E6L|A Chain A, Two-Component Signal Transduction System D13a Mutant Of
Chey
Length = 127
Score = 35.0 bits (79), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 30/67 (44%)
Query: 32 MPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNL 91
MP + G+ LL+ I +PV+M+++ + GA ++VKP L+
Sbjct: 58 MPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEK 117
Query: 92 WQHVWRK 98
++ K
Sbjct: 118 LNKIFEK 124
>pdb|1C4W|A Chain A, 1.9 A Structure Of A-Thiophosphonate Modified Chey D57c
Length = 128
Score = 35.0 bits (79), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 30/67 (44%)
Query: 32 MPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNL 91
MP + G+ LL+ I +PV+M+++ + GA ++VKP L+
Sbjct: 59 MPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEK 118
Query: 92 WQHVWRK 98
++ K
Sbjct: 119 LNKIFEK 125
>pdb|3OO0|A Chain A, Structure Of Apo Chey A113p
pdb|3OO0|B Chain B, Structure Of Apo Chey A113p
pdb|3OO1|A Chain A, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
pdb|3OO1|B Chain B, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
Length = 129
Score = 35.0 bits (79), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 34/75 (45%)
Query: 25 LVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIR 84
V+++ MP + G+ LL+ I +PV+M+++ + GA ++VKP
Sbjct: 53 FVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFT 112
Query: 85 KNELQNLWQHVWRKC 99
L+ ++ K
Sbjct: 113 PATLEEKLNKIFEKL 127
>pdb|1ZDM|A Chain A, Crystal Structure Of Activated Chey Bound To Xe
pdb|1ZDM|B Chain B, Crystal Structure Of Activated Chey Bound To Xe
Length = 129
Score = 35.0 bits (79), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 30/68 (44%)
Query: 32 MPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNL 91
MP + G+ LL+ I +PV+M+++ + GA ++VKP L+
Sbjct: 60 MPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEK 119
Query: 92 WQHVWRKC 99
++ K
Sbjct: 120 LNKIFEKL 127
>pdb|3RVP|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89k
pdb|3RVP|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89k
pdb|3RVQ|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d E89k
Length = 132
Score = 35.0 bits (79), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 34/74 (45%)
Query: 25 LVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIR 84
V+++ MP + G+ LL+ I +PV+M+++ + GA ++VKP
Sbjct: 56 FVISDWDMPNMDGLELLKTIRADGAMSALPVLMVTAKAKKENIIAAAQAGASGYVVKPFT 115
Query: 85 KNELQNLWQHVWRK 98
L+ ++ K
Sbjct: 116 AATLEEKLNKIFEK 129
>pdb|1EHC|A Chain A, Structure Of Signal Transduction Protein Chey
Length = 128
Score = 35.0 bits (79), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 30/67 (44%)
Query: 32 MPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNL 91
MP + G+ LL+ I +PV+M+++ + GA ++VKP L+
Sbjct: 59 MPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEK 118
Query: 92 WQHVWRK 98
++ K
Sbjct: 119 LNKIFEK 125
>pdb|1E6K|A Chain A, Two-Component Signal Transduction System D12a Mutant Of
Chey
Length = 130
Score = 35.0 bits (79), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 30/68 (44%)
Query: 32 MPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNL 91
MP + G+ LL+ I +PV+M+++ + GA ++VKP L+
Sbjct: 61 MPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEK 120
Query: 92 WQHVWRKC 99
++ K
Sbjct: 121 LNKIFEKL 128
>pdb|1AB6|A Chain A, Structure Of Chey Mutant F14n, V86t
pdb|1AB6|B Chain B, Structure Of Chey Mutant F14n, V86t
Length = 125
Score = 35.0 bits (79), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 33/74 (44%)
Query: 25 LVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIR 84
V+++ MP + G+ LL+ I +PV+M ++ + GA ++VKP
Sbjct: 49 FVISDWNMPNMDGLELLKTIRADGAMSALPVLMTTAEAKKENIIAAAQAGASGYVVKPFT 108
Query: 85 KNELQNLWQHVWRK 98
L+ ++ K
Sbjct: 109 AATLEEKLNKIFEK 122
>pdb|3R0J|A Chain A, Structure Of Phop From Mycobacterium Tuberculosis
pdb|3R0J|B Chain B, Structure Of Phop From Mycobacterium Tuberculosis
Length = 250
Score = 34.7 bits (78), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 42/99 (42%), Gaps = 4/99 (4%)
Query: 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSS 60
V NG QA + + D V+ +V P G G+LR++ + P + +++
Sbjct: 48 FEVYTATNGAQALDRARET--RPDAVILDVXXPGXDGFGVLRRL--RADGIDAPALFLTA 103
Query: 61 HDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVWRKC 99
DS+ L+ G ++ KP E+ + + R+
Sbjct: 104 RDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRA 142
>pdb|1UDR|A Chain A, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|B Chain B, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|C Chain C, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|D Chain D, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
Length = 129
Score = 33.9 bits (76), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 34/75 (45%)
Query: 25 LVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIR 84
V+++ MP + G+ LL+ I +PV+M+++ + GA ++VKP
Sbjct: 53 FVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEADAENIKALAQAGASGYVVKPFT 112
Query: 85 KNELQNLWQHVWRKC 99
L+ ++ K
Sbjct: 113 AATLEEKLNKIFEKL 127
>pdb|1K66|A Chain A, Crystal Structure Of The Cyanobacterial Phytochrome
Response Regulator, Rcpb
pdb|1K66|B Chain B, Crystal Structure Of The Cyanobacterial Phytochrome
Response Regulator, Rcpb
Length = 149
Score = 33.9 bits (76), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 39/76 (51%)
Query: 18 DLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVY 77
D+ + ++L ++ +P G +L++I + K IPV++M++ + + C S
Sbjct: 58 DIAPRPAVILLDLNLPGTDGREVLQEIKQDEVLKKIPVVIMTTSSNPKDIEICYSYSISS 117
Query: 78 FLVKPIRKNELQNLWQ 93
++VKP+ + L Q
Sbjct: 118 YIVKPLEIDRLTETVQ 133
>pdb|2R25|B Chain B, Complex Of Ypd1 And Sln1-R1 With Bound Mg2+ And Bef3-
Length = 133
Score = 33.9 bits (76), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Query: 8 NGLQAWKILEDLM---DQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSM 64
+G +A+ +++L + +++ +V MP + G+ L K++ P++ +++
Sbjct: 35 DGQEAFDKVKELTSKGENYNMIFMDVQMPKVDGL-LSTKMIRRDLGYTSPIVALTAFADD 93
Query: 65 SIVFKCLSKGAVYFLVKPIRKNELQNL 91
S + +CL G FL KPI++ +L+ +
Sbjct: 94 SNIKECLESGMNGFLSKPIKRPKLKTI 120
>pdb|1OXB|B Chain B, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P2(1)2(1)2(1)
pdb|1OXK|B Chain B, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|D Chain D, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|F Chain F, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|H Chain H, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|J Chain J, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|L Chain L, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
Length = 134
Score = 33.9 bits (76), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Query: 8 NGLQAWKILEDLM---DQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSM 64
+G +A+ +++L + +++ +V MP + G+ L K++ P++ +++
Sbjct: 34 DGQEAFDKVKELTSKGENYNMIFMDVQMPKVDGL-LSTKMIRRDLGYTSPIVALTAFADD 92
Query: 65 SIVFKCLSKGAVYFLVKPIRKNELQNL 91
S + +CL G FL KPI++ +L+ +
Sbjct: 93 SNIKECLESGMNGFLSKPIKRPKLKTI 119
>pdb|3OLV|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
pdb|3OLV|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
Length = 129
Score = 33.9 bits (76), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 29/68 (42%)
Query: 32 MPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNL 91
MP + G+ LL+ I +PV+M++ + GA ++VKP L+
Sbjct: 60 MPNMDGLELLKTIRADGAMSALPVLMVTVEAKKENIIAAAQAGASGYVVKPFTAATLEEK 119
Query: 92 WQHVWRKC 99
++ K
Sbjct: 120 LNKIFEKL 127
>pdb|5CHY|A Chain A, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 33.9 bits (76), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 34/75 (45%)
Query: 25 LVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIR 84
V+++ MP + G+ LL+ I +PV+M+++ + GA ++VKP
Sbjct: 52 FVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGWVVKPFT 111
Query: 85 KNELQNLWQHVWRKC 99
L+ ++ K
Sbjct: 112 AATLEEKLNKIFEKL 126
>pdb|3OLY|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
pdb|3OLY|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
Length = 129
Score = 33.5 bits (75), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 29/68 (42%)
Query: 32 MPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNL 91
MP + G+ LL+ I +PV+M++ + GA ++VKP L+
Sbjct: 60 MPNMDGLELLKTIRADGAMSALPVLMVTMEAKKENIIAAAQAGASGYVVKPFTAATLEEK 119
Query: 92 WQHVWRKC 99
++ K
Sbjct: 120 LNKIFEKL 127
>pdb|3N53|A Chain A, Crystal Structure Of A Response Regulator Receiver
Modulated Diguanylate Cyclase From Pelobacter
Carbinolicus
pdb|3N53|B Chain B, Crystal Structure Of A Response Regulator Receiver
Modulated Diguanylate Cyclase From Pelobacter
Carbinolicus
Length = 140
Score = 33.5 bits (75), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 43 KIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNEL 88
K+ K KN+P+I++ S + + L GA +L KP +N+L
Sbjct: 67 KLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDL 112
>pdb|1VLZ|A Chain A, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
pdb|1VLZ|B Chain B, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
Length = 128
Score = 33.5 bits (75), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 33/75 (44%)
Query: 25 LVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIR 84
V+++ MP + G+ LL+ I +PV+M+ + + GA ++VKP
Sbjct: 52 FVISDWNMPNMDGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGYVVKPFT 111
Query: 85 KNELQNLWQHVWRKC 99
L+ ++ K
Sbjct: 112 AATLEEKLNKIFEKL 126
>pdb|2ID7|A Chain A, 1.75 A Structure Of T87i Phosphono-Chey
Length = 128
Score = 33.1 bits (74), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 29/68 (42%)
Query: 32 MPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNL 91
MP + G+ LL+ I +PV+M+ + + GA ++VKP L+
Sbjct: 59 MPNMDGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGYVVKPFTAATLEEK 118
Query: 92 WQHVWRKC 99
++ K
Sbjct: 119 LNKIFEKL 126
>pdb|3CWO|X Chain X, A BetaALPHA-Barrel Built By The Combination Of Fragments
From Different Folds
Length = 237
Score = 32.7 bits (73), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 8 NGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIV 67
NG +A + ++L + D+V ++ MP ++GI +++IM K N +I+ S+ ++V
Sbjct: 13 NGREAVEKYKEL--KPDIVTMDITMPEMNGIDAIKEIM--KIDPNAKIIVCSAMGQQAMV 68
Query: 68 FKCLSKGAVYFLV 80
+ + GA F+V
Sbjct: 69 IEAIKAGAKDFIV 81
>pdb|2LLE|A Chain A, Computational Design Of An Eight-Stranded
(BetaALPHA)-Barrel From Fragments Of Different Folds
Length = 234
Score = 32.7 bits (73), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 8 NGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIV 67
NG +A + ++L + D+V ++ MP ++GI +++IM K N +I+ S+ ++V
Sbjct: 13 NGREAVEKYKEL--KPDIVTMDITMPEMNGIDAIKEIM--KIDPNAKIIVCSAMGQQAMV 68
Query: 68 FKCLSKGAVYFLV 80
+ + GA F+V
Sbjct: 69 IEAIKAGAKGFIV 81
>pdb|2PKX|A Chain A, E.Coli Response Regulator Phop Receiver Domain
pdb|2PKX|B Chain B, E.Coli Response Regulator Phop Receiver Domain
pdb|2PL1|A Chain A, Berrylium Fluoride Activated Receiver Domain Of E.Coli
Phop
Length = 121
Score = 32.7 bits (73), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 16/75 (21%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 24 DLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPI 83
D+ + ++ +P G+ L+R+ ++ +P++++++ +S + LS GA ++ KP
Sbjct: 46 DIAIVDLGLPDEDGLSLIRRWRSNDVS--LPILVLTARESWQDKVEVLSAGADDYVTKPF 103
Query: 84 RKNELQNLWQHVWRK 98
E+ Q + R+
Sbjct: 104 HIEEVXARXQALXRR 118
>pdb|3C97|A Chain A, Crystal Structure Of The Response Regulator Receiver
Domain Of A Signal Transduction Histidine Kinase From
Aspergillus Oryzae
Length = 140
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 47/98 (47%), Gaps = 6/98 (6%)
Query: 3 VIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHD 62
+ V NGLQA + ++ Q D+++ ++ MP + G+ + +I N++ N + +
Sbjct: 37 ITVVTNGLQALQAYQNR--QFDVIIMDIQMPVMDGLEAVSEIRNYERTHNTKRASIIAIT 94
Query: 63 SMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVWRKCH 100
+ +I ++ KP+ N+L++ V CH
Sbjct: 95 ADTIDDDRPGAELDEYVSKPLNPNQLRD----VVLTCH 128
>pdb|1YS6|A Chain A, Crystal Structure Of The Response Regulatory Protein Prra
From Mycobacterium Tuberculosis
pdb|1YS6|B Chain B, Crystal Structure Of The Response Regulatory Protein Prra
From Mycobacterium Tuberculosis
pdb|1YS7|A Chain A, Crystal Structure Of The Response Regulator Protein Prra
Comlexed With Mg2+
pdb|1YS7|B Chain B, Crystal Structure Of The Response Regulator Protein Prra
Comlexed With Mg2+
Length = 233
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
Query: 24 DLVLTEVLMPCLSGIGL---LRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80
D ++ ++ MP L G+ + LR + N ++PV ++S+ S+ L GA +LV
Sbjct: 53 DAIVLDINMPVLDGVSVVTALRAMDN-----DVPVCVLSARSSVDDRVAGLEAGADDYLV 107
Query: 81 KPIRKNELQNLWQHVWRK 98
KP EL + + R+
Sbjct: 108 KPFVLAELVARVKALLRR 125
>pdb|3NNN|A Chain A, Bef3 Activated Drrd Receiver Domain
pdb|3NNN|B Chain B, Bef3 Activated Drrd Receiver Domain
Length = 122
Score = 32.0 bits (71), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 19 LMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYF 78
L + D+V+ ++++P G +L+ + ++ N PV+M+++ + K L+ GA +
Sbjct: 43 LNEPFDVVILDIMLPVHDGWEILKSM--RESGVNTPVLMLTALSDVEYRVKGLNMGADDY 100
Query: 79 LVKPIRKNEL 88
L KP EL
Sbjct: 101 LPKPFDLREL 110
>pdb|6CHY|A Chain A, Structure Of Chemotaxis Protein Chey
pdb|6CHY|B Chain B, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 32.0 bits (71), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 33/75 (44%)
Query: 25 LVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIR 84
V+++ MP + G+ LL+ I +PV+M+ + + GA ++VKP
Sbjct: 52 FVISDWNMPNMDGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGWVVKPFT 111
Query: 85 KNELQNLWQHVWRKC 99
L+ ++ K
Sbjct: 112 AATLEEKLNKIFEKL 126
>pdb|2ID9|A Chain A, 1.85 A Structure Of T87iY106W PHOSPHONO-Chey
pdb|2IDM|A Chain A, 2.00 A Structure Of T87iY106W PHOSPHONO-Chey
Length = 128
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 29/68 (42%)
Query: 32 MPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNL 91
MP + G+ LL+ I +PV+M+ + + GA ++VKP L+
Sbjct: 59 MPNMDGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGWVVKPFTAATLEEK 118
Query: 92 WQHVWRKC 99
++ K
Sbjct: 119 LNKIFEKL 126
>pdb|2QZJ|A Chain A, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|B Chain B, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|C Chain C, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|D Chain D, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|E Chain E, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|F Chain F, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
Length = 136
Score = 31.2 bits (69), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 21 DQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80
++ DL+ E+++ G L +KI N TC P++ + + + L+ G +L+
Sbjct: 47 NKYDLIFLEIILSDGDGWTLCKKIRNVTTC---PIVYXTYINEDQSILNALNSGGDDYLI 103
Query: 81 KPI 83
KP+
Sbjct: 104 KPL 106
>pdb|4EUK|A Chain A, Crystal Structure
Length = 153
Score = 31.2 bits (69), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 44/113 (38%), Gaps = 28/113 (24%)
Query: 8 NGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKN--------------- 52
NG++A + DLVL +V MP L G+ R I +++ N
Sbjct: 40 NGVEAITAINS--SSYDLVLMDVCMPVLDGLKATRLIRSYEETGNWNAAIEAGVDISTSE 97
Query: 53 -----------IPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQH 94
+P+I M+++ +C + G F+ KP+ +L+ Q
Sbjct: 98 NEQVCMRPTNRLPIIAMTANTLAESSEECYANGMDSFISKPVTLQKLRECLQQ 150
>pdb|2QXY|A Chain A, Crystal Structure Of A Response Regulator From Thermotoga
Maritima
pdb|2QXY|B Chain B, Crystal Structure Of A Response Regulator From Thermotoga
Maritima
Length = 142
Score = 30.4 bits (67), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 3 VIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHD 62
VI +N +A+ L ++IDLV +V + L+R+I + + V ++S++
Sbjct: 31 VIWAKNEQEAFTFLR--REKIDLVFVDVF-EGEESLNLIRRI--REEFPDTKVAVLSAYV 85
Query: 63 SMSIVFKCLSKGAVYFLVKPIR 84
++ + GAV +++KP R
Sbjct: 86 DKDLIINSVKAGAVDYILKPFR 107
>pdb|1ZIT|A Chain A, Structure Of The Receiver Domain Of Ntrc4 From Aquifex
Aeolicus
pdb|2JRL|A Chain A, Solution Structure Of The Beryllofluoride-Activated Ntrc4
Receiver Domain Dimer
pdb|2JRL|B Chain B, Solution Structure Of The Beryllofluoride-Activated Ntrc4
Receiver Domain Dimer
Length = 121
Score = 30.4 bits (67), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 11 QAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKC 70
+A K +++L +++ +V MP G+ + I + + VI+++ H S+ K
Sbjct: 36 EAEKKIKELF--FPVIVLDVWMPDGDGVNFIDFI--KENSPDSVVIVITGHGSVDTAVKA 91
Query: 71 LSKGAVYFLVKPIRKNELQNLWQHVWRK 98
+ KGA FL KP +H + +
Sbjct: 92 IKKGAYEFLEKPFSVERFLLTIKHAFEE 119
>pdb|1K68|A Chain A, Crystal Structure Of The Phosphorylated Cyanobacterial
Phytochrome Response Regulator Rcpa
pdb|1K68|B Chain B, Crystal Structure Of The Phosphorylated Cyanobacterial
Phytochrome Response Regulator Rcpa
Length = 140
Score = 29.6 bits (65), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 3 VIAVENGLQAWKILEDL-----MDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIM 57
V+ V +G++A L + DL+L + +P G +L +I + T K IPV++
Sbjct: 31 VVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNLPKKDGREVLAEIKSDPTLKRIPVVV 90
Query: 58 MSS 60
+S+
Sbjct: 91 LST 93
>pdb|1KGS|A Chain A, Crystal Structure At 1.50 A Of An OmprPHOB HOMOLOG FROM
THERMOTOGA Maritima
Length = 225
Score = 29.6 bits (65), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 19 LMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYF 78
L + D+V+ ++ +P G +L+ ++ N PV+ +++ + K L+ GA +
Sbjct: 43 LNEPFDVVILDIXLPVHDGWEILKS--XRESGVNTPVLXLTALSDVEYRVKGLNXGADDY 100
Query: 79 LVKPIRKNEL 88
L KP EL
Sbjct: 101 LPKPFDLREL 110
>pdb|3EQZ|A Chain A, Crystal Structure Of A Response Regulator From Colwellia
Psychrerythraea
pdb|3EQZ|B Chain B, Crystal Structure Of A Response Regulator From Colwellia
Psychrerythraea
Length = 135
Score = 29.6 bits (65), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 31/44 (70%), Gaps = 2/44 (4%)
Query: 20 MDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDS 63
+++ D+++ +++MP + GI ++R + HK+ ++ I++S +DS
Sbjct: 44 LNKQDIIILDLMMPDMDGIEVIRHLAEHKSPASL--ILISGYDS 85
>pdb|3DZD|A Chain A, Crystal Structure Of Sigma54 Activator Ntrc4 In The
Inactive State
pdb|3DZD|B Chain B, Crystal Structure Of Sigma54 Activator Ntrc4 In The
Inactive State
Length = 368
Score = 29.3 bits (64), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 55 VIMMSSHDSMSIVFKCLSKGAVYFLVKPI 83
VI+++ H S+ K + KGA FL KP
Sbjct: 75 VIVITGHGSVDTAVKAIKKGAYEFLEKPF 103
>pdb|1R5T|A Chain A, The Crystal Structure Of Cytidine Deaminase Cdd1, An
Orphan C To U Editase From Yeast
pdb|1R5T|B Chain B, The Crystal Structure Of Cytidine Deaminase Cdd1, An
Orphan C To U Editase From Yeast
pdb|1R5T|C Chain C, The Crystal Structure Of Cytidine Deaminase Cdd1, An
Orphan C To U Editase From Yeast
pdb|1R5T|D Chain D, The Crystal Structure Of Cytidine Deaminase Cdd1, An
Orphan C To U Editase From Yeast
Length = 142
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 34 CLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIV 67
C+S G+ R+ +N K+ P++M++S S S V
Sbjct: 92 CVSPCGVCRQFINEFVVKDFPIVMLNSTGSRSKV 125
>pdb|3A0U|A Chain A, Crystal Structure Of Response Regulator Protein Trra
(Tm1360) From Thermotoga Maritima In Complex With
Mg(2+)- Bef (Wild Type)
Length = 116
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 6 VENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSH 61
ENG +A K DLV+ ++ MP +SG+ + +I K I ++ SH
Sbjct: 31 AENGEEALKKF--FSGNYDLVILDIEMPGISGLEVAGEIRKKKKDAKIILLTAYSH 84
>pdb|3ILH|A Chain A, Crystal Structure Of Two Component Response Regulator From
Cytophaga Hutchinsonii
Length = 146
Score = 27.3 bits (59), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 25 LVLTEVLMPCLSG---IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVK 81
++ ++ MP ++G I L ++ K+I ++ SS D S Y++ K
Sbjct: 63 IICIDINMPGINGWELIDLFKQHFQPMKNKSIVCLLSSSLDPRDQAKAEASDWVDYYVSK 122
Query: 82 PIRKNELQNLWQHV 95
P+ N L NL+ V
Sbjct: 123 PLTANALNNLYNKV 136
>pdb|4E7O|A Chain A, Crystal Structure Of Receiver Domain Of Putative Narl
Family Response Regulator Spr1814 From Streptococcus
Pneumoniae
pdb|4E7O|B Chain B, Crystal Structure Of Receiver Domain Of Putative Narl
Family Response Regulator Spr1814 From Streptococcus
Pneumoniae
pdb|4E7P|A Chain A, Crystal Structure Of Receiver Domain Of Putative Narl
Family Response Regulator Spr1814 From Streptococcus
Pneumoniae In The Presence Of The Phosphoryl Analog
Beryllofluoride
pdb|4E7P|B Chain B, Crystal Structure Of Receiver Domain Of Putative Narl
Family Response Regulator Spr1814 From Streptococcus
Pneumoniae In The Presence Of The Phosphoryl Analog
Beryllofluoride
Length = 150
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 2 AVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVI 56
+V+ +NG +A ++LE + +D+ + +V MP +G+ +L I + K + V+
Sbjct: 48 SVLQAKNGQEAIQLLEK--ESVDIAILDVEMPVKTGLEVLEWIRSEKLETKVVVV 100
>pdb|1M5T|A Chain A, Crystal Structure Of The Response Regulator Divk
pdb|1M5U|A Chain A, Crystal Structure Of The Response Regulator Divk.
Structure At Ph 8.0 In The Apo-Form
pdb|1MAV|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 6.0
In Complex With Mn2+
pdb|1MB0|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 8.0
In Complex With Mn2+
pdb|1MB3|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 8.5
In Complex With Mg2+
Length = 124
Score = 26.9 bits (58), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/76 (22%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 8 NGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIV 67
GL A I + ++ DL+L ++ +P +SG+ + + + +IPV+ +++
Sbjct: 33 EGLSALSIARE--NKPDLILMDIQLPEISGLEVTKWLKEDDDLAHIPVVAVTAFAMKGDE 90
Query: 68 FKCLSKGAVYFLVKPI 83
+ G ++ KPI
Sbjct: 91 ERIREGGCEAYISKPI 106
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,623,865
Number of Sequences: 62578
Number of extensions: 96798
Number of successful extensions: 326
Number of sequences better than 100.0: 130
Number of HSP's better than 100.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 219
Number of HSP's gapped (non-prelim): 132
length of query: 162
length of database: 14,973,337
effective HSP length: 91
effective length of query: 71
effective length of database: 9,278,739
effective search space: 658790469
effective search space used: 658790469
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)