BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044790
(162 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q10N34|PRR73_ORYSJ Two-component response regulator-like PRR73 OS=Oryza sativa subsp.
japonica GN=PRR73 PE=2 SV=1
Length = 767
Score = 200 bits (509), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 113/165 (68%), Positives = 129/165 (78%), Gaps = 10/165 (6%)
Query: 3 VIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHD 62
VI ENGL AW+ LEDL + IDLVLTEV+MP LSGIGLL KI +HK CK+IPVIMMSS+D
Sbjct: 107 VIPAENGLHAWQCLEDLQNHIDLVLTEVVMPRLSGIGLLSKITSHKICKDIPVIMMSSND 166
Query: 63 SMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVWRKCHSSSGSGSESCIMTQKSTKSKNA 122
SM VFKCLSKGAV FLVKPIRKNEL+NLWQHVWR+CHSSSGSGSES I TQK TK K
Sbjct: 167 SMGTVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESGIRTQKCTKPKVD 226
Query: 123 EGSDNNSGSNDEDDKG----------SIGLNIQDGSDNGSGTQLS 157
+ +NNSGSN++++ S+G N +DGSDNGSGTQ S
Sbjct: 227 DEYENNSGSNNDNEDDDDNDEDDDDLSVGHNARDGSDNGSGTQSS 271
>sp|A2XFB7|PRR73_ORYSI Two-component response regulator-like PRR73 OS=Oryza sativa subsp.
indica GN=PRR73 PE=2 SV=2
Length = 767
Score = 200 bits (508), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 113/165 (68%), Positives = 129/165 (78%), Gaps = 10/165 (6%)
Query: 3 VIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHD 62
VI ENGL AW+ LEDL + IDLVLTEV+MP LSGIGLL KI +HK CK+IPVIMMSS+D
Sbjct: 107 VIPAENGLHAWQCLEDLQNHIDLVLTEVVMPRLSGIGLLSKITSHKICKDIPVIMMSSND 166
Query: 63 SMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVWRKCHSSSGSGSESCIMTQKSTKSKNA 122
SM VFKCLSKGAV FLVKPIRKNEL+NLWQHVWR+CHSSSGSGSES I TQK TK K
Sbjct: 167 SMGTVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESGIRTQKCTKPKVD 226
Query: 123 EGSDNNSGSNDEDDKG----------SIGLNIQDGSDNGSGTQLS 157
+ +NNSGSN++++ S+G N +DGSDNGSGTQ S
Sbjct: 227 DEYENNSGSNNDNEDDDDNDEDDDDLSVGHNARDGSDNGSGTQSS 271
>sp|Q93WK5|APRR7_ARATH Two-component response regulator-like APRR7 OS=Arabidopsis thaliana
GN=APRR7 PE=2 SV=1
Length = 727
Score = 195 bits (496), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 111/156 (71%), Positives = 130/156 (83%), Gaps = 1/156 (0%)
Query: 3 VIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHD 62
V+ NG+QAWK+LEDL + ID+VLTEV+MP LSGIGLL KI+NHK+ +NIPVIMMSSHD
Sbjct: 104 VVEASNGIQAWKVLEDLNNHIDIVLTEVIMPYLSGIGLLCKILNHKSRRNIPVIMMSSHD 163
Query: 63 SMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVWRKCHSSSGSGSESCI-MTQKSTKSKN 121
SM +VFKCLSKGAV FLVKPIRKNEL+ LWQHVWR+C SSSGSGSES TQKS KSK+
Sbjct: 164 SMGLVFKCLSKGAVDFLVKPIRKNELKILWQHVWRRCQSSSGSGSESGTHQTQKSVKSKS 223
Query: 122 AEGSDNNSGSNDEDDKGSIGLNIQDGSDNGSGTQLS 157
+ SD +SGS+DE++ GSIGLN DGS +GSG Q S
Sbjct: 224 IKKSDQDSGSSDENENGSIGLNASDGSSDGSGAQSS 259
>sp|A2YQ93|PRR37_ORYSI Two-component response regulator-like PRR37 OS=Oryza sativa subsp.
indica GN=PRR37 PE=2 SV=2
Length = 742
Score = 192 bits (489), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 114/158 (72%), Positives = 129/158 (81%), Gaps = 2/158 (1%)
Query: 3 VIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHD 62
VI ENG QAW LED+ + IDLVLTEV+MP +SGI LL +IMNH CKNIPVIMMSS+D
Sbjct: 88 VIPAENGQQAWTYLEDMQNSIDLVLTEVVMPGVSGISLLSRIMNHNICKNIPVIMMSSND 147
Query: 63 SMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVWRKCHSSSGSGSESCIMTQKSTKSKNA 122
+M VFKCLSKGAV FLVKPIRKNEL+NLWQHVWR+CHSSSGSGSES I TQK KSK+
Sbjct: 148 AMGTVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESGIQTQKCAKSKSG 207
Query: 123 EGSDNNSGSNDEDDKGSI--GLNIQDGSDNGSGTQLSS 158
+ S+NNSGSND+DD + GLN +DGSDNGSGTQ S
Sbjct: 208 DESNNNSGSNDDDDDDGVIMGLNARDGSDNGSGTQAQS 245
>sp|Q0D3B6|PRR37_ORYSJ Two-component response regulator-like PRR37 OS=Oryza sativa subsp.
japonica GN=PRR37 PE=2 SV=1
Length = 742
Score = 192 bits (488), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 113/158 (71%), Positives = 129/158 (81%), Gaps = 2/158 (1%)
Query: 3 VIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHD 62
VI ENG QAW LED+ + IDLVLTEV+MP +SGI LL +IMNH CKNIPVIMMSS+D
Sbjct: 88 VIPAENGQQAWTYLEDMQNSIDLVLTEVVMPGVSGISLLSRIMNHNICKNIPVIMMSSND 147
Query: 63 SMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVWRKCHSSSGSGSESCIMTQKSTKSKNA 122
+M VFKCLSKGAV FLVKPIRKNEL+NLWQHVWR+CHSSSGSGSES I TQK KSK+
Sbjct: 148 AMGTVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESGIQTQKCAKSKSG 207
Query: 123 EGSDNNSGSNDEDDKGSI--GLNIQDGSDNGSGTQLSS 158
+ S+NN+GSND+DD + GLN +DGSDNGSGTQ S
Sbjct: 208 DESNNNNGSNDDDDDDGVIMGLNARDGSDNGSGTQAQS 245
>sp|Q9LVG4|APRR3_ARATH Two-component response regulator-like APRR3 OS=Arabidopsis thaliana
GN=APRR3 PE=1 SV=1
Length = 495
Score = 187 bits (475), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 109/159 (68%), Positives = 127/159 (79%), Gaps = 4/159 (2%)
Query: 3 VIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHD 62
V AV + L+AW+ILED IDLVLTEV MP SG GLL KIM+HKT KNIPVIMMSSHD
Sbjct: 90 VTAVPDVLEAWRILEDEKSCIDLVLTEVDMPVHSGTGLLSKIMSHKTLKNIPVIMMSSHD 149
Query: 63 SMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVWRKCHSSSGSGSESCIMTQKSTKSKNA 122
SM +VFKCLS GAV FLVKPIRKNEL+NLWQHVWR+CHSSSGSGSES I +KS K ++
Sbjct: 150 SMVLVFKCLSNGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESGIHDKKSVKPEST 209
Query: 123 EGSDNNSGSNDE--DDKGSI-GLNIQD-GSDNGSGTQLS 157
+GS+N++ +DE ++ GS GL+ QD GSDNGSGTQ S
Sbjct: 210 QGSENDASISDEHRNESGSSGGLSNQDGGSDNGSGTQSS 248
>sp|Q689G6|PRR95_ORYSJ Two-component response regulator-like PRR95 OS=Oryza sativa subsp.
japonica GN=PRR95 PE=2 SV=1
Length = 623
Score = 138 bits (348), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 66/100 (66%), Positives = 78/100 (78%)
Query: 3 VIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHD 62
V A +G++AW IL++ IDLVLTEV +P +SG LL IM H CKNIPVIMMSS+D
Sbjct: 69 VAAASDGVKAWDILKEKSFNIDLVLTEVELPLMSGFLLLSTIMEHDACKNIPVIMMSSND 128
Query: 63 SMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVWRKCHSS 102
S+S+VFKC+ KGA FLVKPIRKNEL+NLWQHVWRK SS
Sbjct: 129 SVSMVFKCMLKGAADFLVKPIRKNELRNLWQHVWRKQLSS 168
>sp|Q8L500|APRR9_ARATH Two-component response regulator-like APRR9 OS=Arabidopsis thaliana
GN=APRR9 PE=2 SV=2
Length = 468
Score = 134 bits (336), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 55/96 (57%), Positives = 76/96 (79%)
Query: 3 VIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHD 62
V+AV +GL AW++L++ IDL+LTE+ +P +SG LL +M H+ CKNIPVIMMSS D
Sbjct: 63 VVAVSDGLAAWEVLKEKSHNIDLILTELDLPSISGFALLALVMEHEACKNIPVIMMSSQD 122
Query: 63 SMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVWRK 98
S+ +V KC+ +GA +L+KP+RKNEL+NLWQHVWR+
Sbjct: 123 SIKMVLKCMLRGAADYLIKPMRKNELKNLWQHVWRR 158
>sp|Q6LA42|APRR5_ARATH Two-component response regulator-like APRR5 OS=Arabidopsis thaliana
GN=APRR5 PE=1 SV=2
Length = 558
Score = 131 bits (329), Expect = 2e-30, Method: Composition-based stats.
Identities = 64/134 (47%), Positives = 90/134 (67%), Gaps = 4/134 (2%)
Query: 3 VIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHD 62
V AV +GL+AW++L+ + +DL+LTEV +P +SG LL IM H CKNIPVIMMS+ D
Sbjct: 76 VAAVPDGLKAWEMLKGKPESVDLILTEVDLPSISGYALLTLIMEHDICKNIPVIMMSTQD 135
Query: 63 SMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVWRKCHSSSGSGSESCIMTQKSTKSKNA 122
S++ V+KC+ KGA +LVKP+R+NEL+NLWQHVWR+ S + +S + A
Sbjct: 136 SVNTVYKCMLKGAADYLVKPLRRNELRNLWQHVWRR----QTSLAPDSFPWNESVGQQKA 191
Query: 123 EGSDNNSGSNDEDD 136
EG+ N+ + DD
Sbjct: 192 EGASANNSNGKRDD 205
>sp|Q689G9|PRR1_ORYSJ Two-component response regulator-like PRR1 OS=Oryza sativa subsp.
japonica GN=PRR1 PE=2 SV=2
Length = 518
Score = 87.8 bits (216), Expect = 3e-17, Method: Composition-based stats.
Identities = 51/139 (36%), Positives = 78/139 (56%), Gaps = 18/139 (12%)
Query: 22 QIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVK 81
+ID++L EV +P +L+ I +K ++IP+IMMS+ D +S+V KCL GA +LVK
Sbjct: 73 EIDIILAEVDLPVSKCFKMLKYIARNKELRHIPIIMMSNRDEVSVVVKCLRLGAAEYLVK 132
Query: 82 PIRKNELQNLWQHVWRKCHSSSGSGSESCIMTQKSTKSKN-----AEGSDNNSG-----S 131
P+R NEL NLW HVWR+ +++K+ + N +E SD N+ S
Sbjct: 133 PLRMNELLNLWTHVWRR--------RRMLGLSEKNFFNDNFELALSEPSDANTNSTTLLS 184
Query: 132 NDEDDKGSIGLNIQDGSDN 150
+D DDK +N + + N
Sbjct: 185 DDTDDKPKENINQETSTSN 203
>sp|Q9LKL2|APRR1_ARATH Two-component response regulator-like APRR1 OS=Arabidopsis thaliana
GN=APRR1 PE=1 SV=1
Length = 618
Score = 87.0 bits (214), Expect = 5e-17, Method: Composition-based stats.
Identities = 53/149 (35%), Positives = 76/149 (51%), Gaps = 4/149 (2%)
Query: 3 VIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHD 62
V AV++ Q L ID++L E+ +P G+ +LR I K + IPVIMMS D
Sbjct: 45 VTAVKSARQVIDALNAEGPDIDIILAEIDLPMAKGMKMLRYITRDKDLRRIPVIMMSRQD 104
Query: 63 SMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVWRKCHSSSGSGSESCIMTQKSTKSKNA 122
+ +V KCL GA +LVKP+R NEL NLW H+WR+ G ++ + +
Sbjct: 105 EVPVVVKCLKLGAADYLVKPLRTNELLNLWTHMWRR-RRMLGLAEKNMLSYDFDLVGSDQ 163
Query: 123 EGSDNNSG---SNDEDDKGSIGLNIQDGS 148
+ NS S+D DD+ N Q G+
Sbjct: 164 SDPNTNSTNLFSDDTDDRSLRSTNPQRGN 192
>sp|Q9ZWJ9|ARR2_ARATH Two-component response regulator ARR2 OS=Arabidopsis thaliana
GN=ARR2 PE=1 SV=1
Length = 664
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 71/128 (55%), Gaps = 8/128 (6%)
Query: 12 AWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCL 71
A +L + D+V+++V MP + G LL + ++PVIMMS+ DS S+V K +
Sbjct: 63 ALSLLRKNKNGFDIVISDVHMPDMDGFKLLEHV---GLEMDLPVIMMSADDSKSVVLKGV 119
Query: 72 SKGAVYFLVKPIRKNELQNLWQHVWRKCH-----SSSGSGSESCIMTQKSTKSKNAEGSD 126
+ GAV +L+KP+R L+N+WQHV RK S GS + + ++ E +D
Sbjct: 120 THGAVDYLIKPVRIEALKNIWQHVVRKKRNEWNVSEHSGGSIEDTGGDRDRQQQHREDAD 179
Query: 127 NNSGSNDE 134
NNS S +E
Sbjct: 180 NNSSSVNE 187
>sp|Q8L9Y3|ARR14_ARATH Two-component response regulator ARR14 OS=Arabidopsis thaliana
GN=ARR14 PE=1 SV=2
Length = 382
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 68/120 (56%), Gaps = 13/120 (10%)
Query: 12 AWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCL 71
A IL + D DLVL++V MP ++G LL+++ + ++PVIMMS + V +
Sbjct: 46 ALTILRERKDSFDLVLSDVHMPGMNGYNLLQQVGLLEM--DLPVIMMSVDGRTTTVMTGI 103
Query: 72 SKGAVYFLVKPIRKNELQNLWQHVWRKCHSSSGSGSESCIMTQKSTKSKNAEGSDNNSGS 131
+ GA +L+KPIR EL+N+WQHV R+ C+M +K +S A + NSGS
Sbjct: 104 NHGACDYLIKPIRPEELKNIWQHVVRR----------KCVM-KKELRSSQALEDNKNSGS 152
>sp|Q940D0|ARR1_ARATH Two-component response regulator ARR1 OS=Arabidopsis thaliana
GN=ARR1 PE=1 SV=2
Length = 690
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 52/79 (65%), Gaps = 3/79 (3%)
Query: 23 IDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKP 82
D+V+++V MP + G LL + ++PVIMMS+ DS S+V K ++ GAV +L+KP
Sbjct: 83 FDIVISDVHMPDMDGFKLLEHV---GLEMDLPVIMMSADDSKSVVLKGVTHGAVDYLIKP 139
Query: 83 IRKNELQNLWQHVWRKCHS 101
+R L+N+WQHV RK S
Sbjct: 140 VRMEALKNIWQHVVRKRRS 158
>sp|P62598|ARR12_ARATH Two-component response regulator ARR12 OS=Arabidopsis thaliana
GN=ARR12 PE=2 SV=2
Length = 596
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 56/95 (58%), Gaps = 3/95 (3%)
Query: 3 VIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHD 62
V +A ++L + ++ DLV+++V MP + G LL + ++PVIM+S+H
Sbjct: 43 VTTTNQAQKALELLRENKNKFDLVISDVDMPDMDGFKLLELV---GLEMDLPVIMLSAHS 99
Query: 63 SMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVWR 97
V K ++ GA +L+KP+R EL+N+WQHV R
Sbjct: 100 DPKYVMKGVTHGACDYLLKPVRIEELKNIWQHVVR 134
>sp|Q9ZWS9|ARR3_ARATH Two-component response regulator ARR3 OS=Arabidopsis thaliana
GN=ARR3 PE=2 SV=1
Length = 231
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 88/164 (53%), Gaps = 22/164 (13%)
Query: 3 VIAVENGLQAWKILEDL-MD-----------QIDLVLTEVLMPCLSGIGLLRKIMNHKTC 50
V AV++G W+ LE L +D ++DL++T+ MP ++G LL+KI +
Sbjct: 59 VTAVDSG---WRALEFLGLDDDKAAVEFDRLKVDLIITDYCMPGMTGYELLKKIKESTSF 115
Query: 51 KNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVWRKCHSSSGSGSESC 110
K +PV++MSS + M+ + +CL +GA FL+KP++ +++ L ++ R ++ G++
Sbjct: 116 KEVPVVIMSSENVMTRIDRCLEEGAEDFLLKPVKLADVKRLRSYLTRDVKVAA-EGNKRK 174
Query: 111 IMTQKSTKSKNAEGSDNNSGSNDE------DDKGSIGLNIQDGS 148
+ T +A S +S S E DD+ S+ ++ + +
Sbjct: 175 LTTPPPPPPLSATSSMESSDSTVESPLSMVDDEDSLTMSPESAT 218
>sp|O49397|ARR10_ARATH Two-component response regulator ARR10 OS=Arabidopsis thaliana
GN=ARR10 PE=1 SV=1
Length = 552
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 70/139 (50%), Gaps = 9/139 (6%)
Query: 3 VIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHD 62
V A ++L + ++ DLV+++V MP + G LL + ++PVIM+S+H
Sbjct: 43 VTTTNQAQTALELLRENKNKFDLVISDVDMPDMDGFKLLELV---GLEMDLPVIMLSAHS 99
Query: 63 SMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVWRKCHSSS-----GSGSESCIMTQKST 117
V K + GA +L+KP+R EL+N+WQHV RK +GS +C +
Sbjct: 100 DPKYVMKGVKHGACDYLLKPVRIEELKNIWQHVVRKSKLKKNKSNVSNGSGNCDKANRKR 159
Query: 118 KSKNAEGSDNNSGSNDEDD 136
K + E + G ND DD
Sbjct: 160 KEQYEEEEEEERG-NDNDD 177
>sp|O82798|ARR4_ARATH Two-component response regulator ARR4 OS=Arabidopsis thaliana
GN=ARR4 PE=1 SV=1
Length = 259
Score = 66.6 bits (161), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 67/114 (58%), Gaps = 15/114 (13%)
Query: 3 VIAVENGLQAWKILEDL-MD-----------QIDLVLTEVLMPCLSGIGLLRKIMNHKTC 50
V AV++G W+ LE L +D ++DL++T+ MP ++G LL+KI
Sbjct: 60 VTAVDSG---WRALEFLGLDNEKASAEFDRLKVDLIITDYCMPGMTGYELLKKIKESSNF 116
Query: 51 KNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVWRKCHSSSG 104
+ +PV++MSS + ++ + +CL +GA FL+KP++ +++ L H+ + S+G
Sbjct: 117 REVPVVIMSSENVLTRIDRCLEEGAQDFLLKPVKLADVKRLRSHLTKDVKLSNG 170
>sp|Q7Y0W5|EHD1_ORYSJ Two-component response regulator EHD1 OS=Oryza sativa subsp.
japonica GN=EHD1 PE=1 SV=1
Length = 341
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 56/97 (57%), Gaps = 5/97 (5%)
Query: 3 VIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCK-NIPVIMMSSH 61
V +N +A + D +DLV+++ P G+ +L+++ T K IP ++M+S
Sbjct: 37 VTTYKNVREAVPFILDNPQIVDLVISDAFFPTEDGLLILQEV----TSKFGIPTVIMASS 92
Query: 62 DSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVWRK 98
+ V K ++ GA FL+KP+R EL N+WQH++RK
Sbjct: 93 GDTNTVMKYVANGAFDFLLKPVRIEELSNIWQHIFRK 129
>sp|Q7Y0W3|EHD1_ORYSI Two-component response regulator EHD1 OS=Oryza sativa subsp. indica
PE=2 SV=1
Length = 341
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 56/97 (57%), Gaps = 5/97 (5%)
Query: 3 VIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCK-NIPVIMMSSH 61
V +N +A + D +DLV+++ P G+ +L+++ T K IP ++M+S
Sbjct: 37 VTTYKNVREAVPFILDNPQIVDLVISDAFFPTEDGLLILQEV----TSKFGIPTVIMASS 92
Query: 62 DSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVWRK 98
+ V K ++ GA FL+KP+R EL N+WQH++RK
Sbjct: 93 GDTNTVMKYVANGAFDFLLKPVRIEELSNIWQHIFRK 129
>sp|Q9ZWS7|ARR7_ARATH Two-component response regulator ARR7 OS=Arabidopsis thaliana
GN=ARR7 PE=1 SV=1
Length = 206
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 71/130 (54%), Gaps = 16/130 (12%)
Query: 3 VIAVENGLQAWKIL--------EDLMD-QIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNI 53
V VE+G +A + L +L D +++L++T+ MP LSG LL+KI + +
Sbjct: 50 VTTVESGTRALQYLGLDGGKGASNLKDLKVNLIVTDYSMPGLSGYDLLKKIKESSAFREV 109
Query: 54 PVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVWRKCHSSSGSGSESCIMT 113
PV++MSS + + + +CL +GA FL+KP++ +++ + Q + R + +E C +
Sbjct: 110 PVVIMSSENILPRIQECLKEGAEEFLLKPVKLADVKRIKQLIMR-------NEAEECKIL 162
Query: 114 QKSTKSKNAE 123
S K K E
Sbjct: 163 SHSNKRKLQE 172
>sp|O80366|ARR9_ARATH Two-component response regulator ARR9 OS=Arabidopsis thaliana
GN=ARR9 PE=1 SV=1
Length = 234
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 49/76 (64%)
Query: 22 QIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVK 81
+++L++T+ MP ++G LL+K+ ++IPV++MSS + + + +CL +GA F +K
Sbjct: 73 EVNLIITDYCMPGMTGYDLLKKVKESSAFRDIPVVIMSSENVPARISRCLEEGAEEFFLK 132
Query: 82 PIRKNELQNLWQHVWR 97
P+R +L L H+ +
Sbjct: 133 PVRLADLNKLKPHMMK 148
>sp|Q9FXD6|ARR11_ARATH Two-component response regulator ARR11 OS=Arabidopsis thaliana
GN=ARR11 PE=1 SV=1
Length = 521
Score = 62.8 bits (151), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 52/88 (59%), Gaps = 3/88 (3%)
Query: 11 QAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKC 70
+A ++L + D D+V+++V MP + G LL + ++PVIMMS S V K
Sbjct: 45 EALRLLRERKDGYDIVISDVNMPDMDGFKLLEHV---GLELDLPVIMMSVDGETSRVMKG 101
Query: 71 LSKGAVYFLVKPIRKNELQNLWQHVWRK 98
+ GA +L+KPIR EL+ +WQHV RK
Sbjct: 102 VQHGACDYLLKPIRMKELKIIWQHVLRK 129
>sp|Q9FGT7|ARR18_ARATH Two-component response regulator ARR18 OS=Arabidopsis thaliana
GN=ARR18 PE=2 SV=2
Length = 635
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 4/88 (4%)
Query: 11 QAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKC 70
+A ++L + + DLV+++V MP G LL + ++PVIM+S+H V K
Sbjct: 52 KALEMLRENSNMFDLVISDVEMPDTDGFKLLEIGLE----MDLPVIMLSAHSDYDSVMKG 107
Query: 71 LSKGAVYFLVKPIRKNELQNLWQHVWRK 98
+ GA +LVKP+ ELQN+W HV +K
Sbjct: 108 IIHGACDYLVKPVGLKELQNIWHHVVKK 135
>sp|Q9LZJ8|ARR20_ARATH Putative two-component response regulator ARR20 OS=Arabidopsis
thaliana GN=ARR20 PE=2 SV=1
Length = 426
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 68/144 (47%), Gaps = 15/144 (10%)
Query: 3 VIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHD 62
V E+G +A L +IDLV+ + MP ++G+ L I ++PV++MS
Sbjct: 65 VTKYESGEEAMAFLMKNKHEIDLVIWDFHMPDINGLDALNIIGKQM---DLPVVIMSHEY 121
Query: 63 SMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVWRKCHSSSG------SGS------ESC 110
V + + GA FLVKP+ K + LW+HV+RK S SG SG+ E
Sbjct: 122 KKETVMESIKYGACDFLVKPVSKEVIAVLWRHVYRKRMSKSGLDKPGESGTVESDPDEYD 181
Query: 111 IMTQKSTKSKNAEGSDNNSGSNDE 134
+ Q + N EGS N +E
Sbjct: 182 DLEQDNLYESNEEGSKNTCDHKEE 205
>sp|Q7G8V2|ARR15_ARATH Two-component response regulator ARR15 OS=Arabidopsis thaliana
GN=ARR15 PE=1 SV=1
Length = 206
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 63/113 (55%), Gaps = 13/113 (11%)
Query: 3 VIAVENGLQAWKIL-----------EDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCK 51
V VE+G +A + L +DL +++L++T+ MP L+G LL+KI +
Sbjct: 44 VTTVESGTRALQYLGLDGDNGSSGLKDL--KVNLIVTDYSMPGLTGYELLKKIKESSALR 101
Query: 52 NIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVWRKCHSSSG 104
IPV++MSS + + +C+ +GA FL+KP++ +++ L + + R + G
Sbjct: 102 EIPVVIMSSENIQPRIEQCMIEGAEEFLLKPVKLADVKRLKELIMRGGEAEEG 154
>sp|O80365|ARR8_ARATH Two-component response regulator ARR8 OS=Arabidopsis thaliana
GN=ARR8 PE=1 SV=1
Length = 225
Score = 60.1 bits (144), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 49/76 (64%)
Query: 22 QIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVK 81
+I+L++T+ MP ++G LL+K+ ++IPV++MSS + + + +CL +GA F +K
Sbjct: 71 EINLIITDYCMPGMTGYDLLKKVKESAAFRSIPVVIMSSENVPARISRCLEEGAEEFFLK 130
Query: 82 PIRKNELQNLWQHVWR 97
P++ +L L H+ +
Sbjct: 131 PVKLADLTKLKPHMMK 146
>sp|Q23917|PDE2_DICDI 3',5'-cyclic-nucleotide phosphodiesterase regA OS=Dictyostelium
discoideum GN=regA PE=1 SV=1
Length = 793
Score = 58.5 bits (140), Expect = 2e-08, Method: Composition-based stats.
Identities = 37/108 (34%), Positives = 59/108 (54%), Gaps = 19/108 (17%)
Query: 3 VIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMS--- 59
V V NG AW+ + + DLVLT+V+MP ++G LL++I +H ++IPVI+MS
Sbjct: 186 VTLVPNGEIAWEYINKGQQKYDLVLTDVMMPHITGFDLLQRINDHPVHRHIPVILMSGTA 245
Query: 60 -----SHDSMSIVFKCLSKGAVYFLVKPIRKNELQ----NLWQHVWRK 98
++D++ I G FL KPI K L+ + Q +W++
Sbjct: 246 VDYKYANDTIKI-------GGQDFLTKPIAKELLKKKIDTVLQSIWQR 286
>sp|Q9FPR6|ARR17_ARATH Two-component response regulator ARR17 OS=Arabidopsis thaliana
GN=ARR17 PE=2 SV=1
Length = 153
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 61/104 (58%), Gaps = 10/104 (9%)
Query: 3 VIAVENGLQAWKIL--------EDLMD--QIDLVLTEVLMPCLSGIGLLRKIMNHKTCKN 52
V ENGL+A + L + L + +++L++T+ MP ++G LL+K+ K
Sbjct: 46 VTTAENGLRALEYLGLGDPQQTDSLTNVMKVNLIITDYCMPGMTGFELLKKVKESSNLKE 105
Query: 53 IPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVW 96
+PV+++SS + + + KCL+ GA F+ KP++ ++++ L H+
Sbjct: 106 VPVVILSSENIPTRINKCLASGAQMFMQKPLKLSDVEKLKCHLL 149
>sp|Q9SB04|ARR5_ARATH Two-component response regulator ARR5 OS=Arabidopsis thaliana
GN=ARR5 PE=1 SV=2
Length = 184
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 52/82 (63%), Gaps = 2/82 (2%)
Query: 16 LEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGA 75
EDL +I+L++T+ MP ++G LL+KI + IPV++MSS + + + +CL +GA
Sbjct: 76 FEDL--KINLIMTDYSMPGMTGYELLKKIKESSAFREIPVVIMSSENILPRIDRCLEEGA 133
Query: 76 VYFLVKPIRKNELQNLWQHVWR 97
FL+KP++ +++ L + +
Sbjct: 134 EDFLLKPVKLADVKRLRDSLMK 155
>sp|Q9ZWS6|ARR6_ARATH Two-component response regulator ARR6 OS=Arabidopsis thaliana
GN=ARR6 PE=1 SV=2
Length = 186
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 16 LEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGA 75
EDL +++L++T+ MP ++G LL+KI + +PV++MSS + + + +CL +GA
Sbjct: 75 FEDL--KVNLIMTDYSMPGMTGYELLKKIKESSAFREVPVVIMSSENILPRIDRCLEEGA 132
Query: 76 VYFLVKPIRKNELQNL 91
FL+KP++ ++++ L
Sbjct: 133 EDFLLKPVKLSDVKRL 148
>sp|P58253|SP0A_CLOAB Stage 0 sporulation protein A homolog OS=Clostridium acetobutylicum
(strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM
B-1787) GN=spo0A PE=3 SV=1
Length = 281
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 81/135 (60%), Gaps = 13/135 (9%)
Query: 1 MAVIAV-ENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIP-VIMM 58
M V+ + ++G++A K++E+ + DLV+ +++MP L G+G+L K +N+K +N+P +I++
Sbjct: 31 MIVVGIAKDGVEALKLIEN--KKPDLVVLDIIMPRLDGLGVLEK-LNNKDAENLPRIIVL 87
Query: 59 SSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVWRKCHSSSGSGSESCIMTQKSTK 118
S+ I + ++ GA Y++VKP +++ + R+ +++ S SE ++S +
Sbjct: 88 SAVGQDKITQRAITLGADYYVVKPFD----MDVFTNRIREMFNNTISNSEQ----KRSYQ 139
Query: 119 SKNAEGSDNNSGSND 133
+ E S + +ND
Sbjct: 140 VEEKEASFAGTIAND 154
>sp|Q9LYP5|ARR21_ARATH Putative two-component response regulator ARR21 OS=Arabidopsis
thaliana GN=ARR21 PE=2 SV=3
Length = 613
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 55/91 (60%), Gaps = 4/91 (4%)
Query: 3 VIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHD 62
VIAV++ +A L+ D IDL++T+ MP ++G+ L ++I + N+PV++MSS
Sbjct: 42 VIAVDDPKKALSTLKIQRDNIDLIITDYYMPGMNGLQLKKQIT--QEFGNLPVLVMSSDT 99
Query: 63 SMSIVFKCLSKGAVYFLVKPIRKNELQNLWQ 93
+ + LS GA+ F+ KPI +L ++Q
Sbjct: 100 NKEE--ESLSCGAMGFIPKPIHPTDLTKIYQ 128
>sp|Q9SHC2|ARR16_ARATH Two-component response regulator ARR16 OS=Arabidopsis thaliana
GN=ARR16 PE=1 SV=1
Length = 164
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 57/107 (53%), Gaps = 14/107 (13%)
Query: 3 VIAVENGLQAWKILEDLMDQ-------------IDLVLTEVLMPCLSGIGLLRKIMNHKT 49
V EN L+A + L L DQ + L++T+ MP ++G LL+K+
Sbjct: 55 VTTAENALRALEYL-GLGDQNQHIDALTCNVMKVSLIITDYCMPGMTGFELLKKVKESSN 113
Query: 50 CKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVW 96
+ +PV++MSS + + + KCL+ GA F+ KP++ +++ L H+
Sbjct: 114 LREVPVVIMSSENIPTRINKCLASGAQMFMQKPLKLADVEKLKCHLM 160
>sp|Q6LA43|APRR2_ARATH Two-component response regulator-like APRR2 OS=Arabidopsis thaliana
GN=APRR2 PE=2 SV=2
Length = 535
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 34/53 (64%)
Query: 53 IPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVWRKCHSSSGS 105
+P IM+S+ ++ KC++ GAV FL KP+ +L+N+WQHV K + GS
Sbjct: 96 LPTIMISTDHCITTTMKCIALGAVEFLQKPLSPEKLKNIWQHVVHKAFNDGGS 148
>sp|Q9ZVD3|ARR13_ARATH Putative two-component response regulator ARR13 OS=Arabidopsis
thaliana GN=ARR13 PE=2 SV=2
Length = 572
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 62/115 (53%), Gaps = 6/115 (5%)
Query: 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSS 60
+ VIAV+ +A L++ D IDL++T+ MP ++G+ L ++I + N+ V++MSS
Sbjct: 43 ITVIAVDYPKKALSTLKNQRDNIDLIITDYYMPGMNGLQLKKQIT--QEFGNLSVLVMSS 100
Query: 61 HDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVWRKCHSSSGSGSESCIMTQK 115
+ + LS GA+ F+ KPI +L ++Q + +G + S QK
Sbjct: 101 DPNKEE--ESLSCGAMGFIPKPIAPTDLPKIYQFAL--TYKRNGKSTLSTEQNQK 151
>sp|Q9M9B9|ARR19_ARATH Putative two-component response regulator ARR19 OS=Arabidopsis
thaliana GN=ARR19 PE=2 SV=2
Length = 407
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 50/89 (56%), Gaps = 5/89 (5%)
Query: 11 QAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCK-NIPVIMMSSHDSMSIVFK 69
+A L +I++V+ + MP + G+ L+ I T K ++PV++MS + V K
Sbjct: 68 KALAFLTSCKHEINIVIWDFHMPGIDGLQALKSI----TSKLDLPVVIMSDDNQTESVMK 123
Query: 70 CLSKGAVYFLVKPIRKNELQNLWQHVWRK 98
GA ++VKP+++ + N+WQH+ RK
Sbjct: 124 ATFYGACDYVVKPVKEEVMANIWQHIVRK 152
>sp|Q9ZEP4|CSEB_STRCO Transcriptional regulatory protein CseB OS=Streptomyces coelicolor
(strain ATCC BAA-471 / A3(2) / M145) GN=cseB PE=1 SV=1
Length = 234
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 57/112 (50%), Gaps = 8/112 (7%)
Query: 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSS 60
AV A+ +GL + D+ D+ L +V++P L G+ L R+I + T +PVIM+S+
Sbjct: 29 FAVTAMPDGLSGLESFR--ADRPDIALLDVMLPGLDGVSLCRRIRDEST---VPVIMLSA 83
Query: 61 H-DSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVWRKC-HSSSGSGSESC 110
DS+ +V L GA ++ KP L + V R+ H+ G +E
Sbjct: 84 RADSIDVVL-GLEAGADDYVTKPFDGAVLVARIRAVLRRFGHAGGGDRTEGA 134
>sp|A1TEL7|MPRA_MYCVP Response regulator MprA OS=Mycobacterium vanbaalenii (strain DSM
7251 / PYR-1) GN=mprA PE=3 SV=1
Length = 231
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 21 DQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80
D+ D V+ +V+MP L G+ + R++ T ++P++++++ DS+S L GA +L
Sbjct: 45 DRPDAVVLDVMMPRLDGLEVCRQL--RSTGDDLPILVLTARDSVSERVAGLDAGADDYLP 102
Query: 81 KPIRKNELQNLWQHVWRKCHSSSGSGSESCIMT 113
KP EL + + R+ G+G ES MT
Sbjct: 103 KPFALEELLARMRALLRRTTPDDGAG-ESAAMT 134
>sp|A1W0A5|CHEY_CAMJJ Chemotaxis protein CheY homolog OS=Campylobacter jejuni subsp.
jejuni serotype O:23/36 (strain 81-176) GN=cheY PE=3
SV=1
Length = 130
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 58/105 (55%), Gaps = 4/105 (3%)
Query: 3 VIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHD 62
V+ E+G++AW +L D + +++T+ MP ++G+ L++K+ K +++P+IM+++
Sbjct: 28 VLEAEHGVEAWDLLTKNED-VKVLITDWNMPEMNGLELVKKVRAEKKYEDMPIIMVTTEG 86
Query: 63 SMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVWRKCHSSSGSGS 107
+ V L G ++VKP L+ + V + SG G+
Sbjct: 87 GKAEVITALKAGVNNYIVKPFTPQVLKEKLEDV---LGTGSGEGA 128
>sp|P0C635|CHEY_CAMJE Chemotaxis protein CheY homolog OS=Campylobacter jejuni subsp.
jejuni serotype O:2 (strain NCTC 11168) GN=cheY PE=3
SV=1
Length = 130
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 58/105 (55%), Gaps = 4/105 (3%)
Query: 3 VIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHD 62
V+ E+G++AW +L D + +++T+ MP ++G+ L++K+ K +++P+IM+++
Sbjct: 28 VLEAEHGVEAWDLLTKNED-VKVLITDWNMPEMNGLELVKKVRAEKKYEDMPIIMVTTEG 86
Query: 63 SMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVWRKCHSSSGSGS 107
+ V L G ++VKP L+ + V + SG G+
Sbjct: 87 GKAEVITALKAGVNNYIVKPFTPQVLKEKLEDV---LGTGSGEGA 128
>sp|A8FMH1|CHEY_CAMJ8 Chemotaxis protein CheY homolog OS=Campylobacter jejuni subsp.
jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=cheY
PE=3 SV=1
Length = 130
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 58/105 (55%), Gaps = 4/105 (3%)
Query: 3 VIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHD 62
V+ E+G++AW +L D + +++T+ MP ++G+ L++K+ K +++P+IM+++
Sbjct: 28 VLEAEHGVEAWDLLTKNED-VKVLITDWNMPEMNGLELVKKVRAEKKYEDMPIIMVTTEG 86
Query: 63 SMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVWRKCHSSSGSGS 107
+ V L G ++VKP L+ + V + SG G+
Sbjct: 87 GKAEVITALKAGVNNYIVKPFTPQVLKEKLEDV---LGTGSGEGA 128
>sp|Q4UU85|RPFG_XANC8 Cyclic di-GMP phosphodiesterase response regulator RpfG
OS=Xanthomonas campestris pv. campestris (strain 8004)
GN=rpfG PE=1 SV=1
Length = 378
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 39/68 (57%)
Query: 22 QIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVK 81
++DL+L + MP + G+ R++ + ++IP+I+++ I L G + FLVK
Sbjct: 73 RVDLLLLDYRMPGMDGLEFARRLRRLPSHRDIPIILITIVGDEPIRQAALEAGVIDFLVK 132
Query: 82 PIRKNELQ 89
PIR EL+
Sbjct: 133 PIRPRELR 140
>sp|Q82EB1|CSEB_STRAW Transcriptional regulatory protein CseB OS=Streptomyces avermitilis
(strain ATCC 31267 / DSM 46492 / JCM 5070 / NCIMB 12804
/ NRRL 8165 / MA-4680) GN=cseB PE=3 SV=1
Length = 235
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 7/111 (6%)
Query: 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSS 60
AV A+ +GL + ++ D+ L +V++P L G+ L R+I + T +PVIM+S+
Sbjct: 29 FAVTAMPDGLSGLEAFR--ANRPDIALLDVMVPGLDGVSLCRRIRDEST---VPVIMLSA 83
Query: 61 H-DSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVWRKCHSSSGSGSESC 110
DS+ +V L GA ++ KP L + V R+ +SG S
Sbjct: 84 RADSIDVVL-GLEAGADDYVTKPFDGAVLVARIRAVLRRFGHASGPNSRPA 133
>sp|Q9A5I5|PLED_CAUCR Response regulator PleD OS=Caulobacter crescentus (strain ATCC
19089 / CB15) GN=pleD PE=1 SV=1
Length = 454
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 38/63 (60%)
Query: 21 DQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80
D D++L +V+MP + G + RK+ + T ++IPV+++++ D + L GA FL
Sbjct: 45 DLPDIILLDVMMPGMDGFTVCRKLKDDPTTRHIPVVLITALDGRGDRIQGLESGASDFLT 104
Query: 81 KPI 83
KPI
Sbjct: 105 KPI 107
>sp|B8GZM2|PLED_CAUCN Response regulator PleD OS=Caulobacter crescentus (strain NA1000 /
CB15N) GN=pleD PE=1 SV=1
Length = 454
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 38/63 (60%)
Query: 21 DQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80
D D++L +V+MP + G + RK+ + T ++IPV+++++ D + L GA FL
Sbjct: 45 DLPDIILLDVMMPGMDGFTVCRKLKDDPTTRHIPVVLITALDGRGDRIQGLESGASDFLT 104
Query: 81 KPI 83
KPI
Sbjct: 105 KPI 107
>sp|A7N6S2|CQSS_VIBHB CAI-1 autoinducer sensor kinase/phosphatase CqsS OS=Vibrio harveyi
(strain ATCC BAA-1116 / BB120) GN=cqsS PE=1 SV=1
Length = 681
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 3 VIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIM-NHKTCKNIPVIMMSSH 61
VI E+GLQA L + + +DL+L ++ MP + G+ R+I ++K ++P+I +
Sbjct: 589 VIQTEDGLQAINALNE--NNVDLILMDIEMPVMDGVEASRQIRGSNKAYASVPIIAHTGD 646
Query: 62 DSMSIVFKCLSKGAVYFLVKPIRKNEL 88
S + K S G F+VKP KN L
Sbjct: 647 SSPITLDKIGSSGMSDFIVKPADKNRL 673
>sp|P0A4I4|SP0A_BACTU Stage 0 sporulation protein A OS=Bacillus thuringiensis GN=spo0A
PE=3 SV=1
Length = 264
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 50/88 (56%), Gaps = 5/88 (5%)
Query: 8 NGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIV 67
NG + +L D Q D+++ +++MP L G+ +L K+ + + K VIM+++ +
Sbjct: 37 NGQECLNLLTD--KQPDVLVLDIIMPHLDGLAVLEKMRHIERLKQPSVIMLTAFGQEDVT 94
Query: 68 FKCLSKGAVYFLVKPIRKNELQNLWQHV 95
K + GA YF++KP +++NL H+
Sbjct: 95 KKAVDLGASYFILKPF---DMENLTSHI 119
>sp|P0A4I3|SP0A_BACCR Stage 0 sporulation protein A OS=Bacillus cereus (strain ATCC 14579
/ DSM 31) GN=spo0A PE=3 SV=1
Length = 264
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 50/88 (56%), Gaps = 5/88 (5%)
Query: 8 NGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIV 67
NG + +L D Q D+++ +++MP L G+ +L K+ + + K VIM+++ +
Sbjct: 37 NGQECLNLLTD--KQPDVLVLDIIMPHLDGLAVLEKMRHIERLKQPSVIMLTAFGQEDVT 94
Query: 68 FKCLSKGAVYFLVKPIRKNELQNLWQHV 95
K + GA YF++KP +++NL H+
Sbjct: 95 KKAVDLGASYFILKPF---DMENLTSHI 119
>sp|P52928|SP0A_BACAN Stage 0 sporulation protein A OS=Bacillus anthracis GN=spo0A PE=3
SV=2
Length = 264
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 51/88 (57%), Gaps = 5/88 (5%)
Query: 8 NGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIV 67
NG + +L+D Q D+++ +++MP L G+ +L K+ + + + VIM+++ +
Sbjct: 37 NGQECLNLLKD--KQPDVLVLDIIMPHLDGLAVLEKMRHIERLRQPSVIMLTAFGQEDVT 94
Query: 68 FKCLSKGAVYFLVKPIRKNELQNLWQHV 95
K + GA YF++KP +++NL H+
Sbjct: 95 KKAVDLGASYFILKPF---DMENLTSHI 119
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.129 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,018,337
Number of Sequences: 539616
Number of extensions: 2216911
Number of successful extensions: 14453
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 417
Number of HSP's that attempted gapping in prelim test: 12137
Number of HSP's gapped (non-prelim): 2454
length of query: 162
length of database: 191,569,459
effective HSP length: 108
effective length of query: 54
effective length of database: 133,290,931
effective search space: 7197710274
effective search space used: 7197710274
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (26.2 bits)