Query 044790
Match_columns 162
No_of_seqs 179 out of 1488
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 06:46:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044790.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044790hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0745 OmpR Response regulato 99.9 4.2E-22 9.1E-27 151.4 13.1 97 1-101 25-121 (229)
2 COG4753 Response regulator con 99.8 1.8E-19 3.9E-24 147.5 11.6 94 3-100 31-124 (475)
3 COG2204 AtoC Response regulato 99.8 3.8E-18 8.3E-23 139.8 13.0 97 1-101 29-125 (464)
4 PF00072 Response_reg: Respons 99.8 1.1E-17 2.4E-22 112.4 12.2 88 2-93 25-112 (112)
5 COG3437 Response regulator con 99.7 6.9E-18 1.5E-22 132.8 9.6 97 1-99 39-136 (360)
6 COG4566 TtrR Response regulato 99.7 1.5E-17 3.2E-22 120.6 9.9 95 1-99 29-123 (202)
7 COG2197 CitB Response regulato 99.7 6E-17 1.3E-21 121.8 12.4 97 3-103 29-125 (211)
8 COG4565 CitB Response regulato 99.7 2.9E-17 6.2E-22 121.2 10.3 98 3-104 29-126 (224)
9 COG3706 PleD Response regulato 99.7 2.1E-16 4.6E-21 128.7 12.3 99 1-101 157-255 (435)
10 PRK10046 dpiA two-component re 99.7 1E-15 2.2E-20 115.8 13.3 96 3-102 33-128 (225)
11 PRK11475 DNA-binding transcrip 99.7 9.8E-16 2.1E-20 114.9 12.4 97 2-102 19-119 (207)
12 KOG0519 Sensory transduction h 99.7 7E-16 1.5E-20 134.9 10.7 94 2-97 692-785 (786)
13 COG0784 CheY FOG: CheY-like re 99.6 6.7E-15 1.5E-19 101.2 13.2 94 1-98 30-126 (130)
14 PRK10816 DNA-binding transcrip 99.6 5.4E-15 1.2E-19 110.5 13.6 95 1-99 25-119 (223)
15 PRK09836 DNA-binding transcrip 99.6 9.1E-15 2E-19 109.5 13.6 95 1-99 25-119 (227)
16 PRK11173 two-component respons 99.6 1.1E-14 2.5E-19 110.0 13.5 95 1-100 28-122 (237)
17 PLN03029 type-a response regul 99.6 1.2E-14 2.5E-19 110.1 13.1 98 1-98 33-148 (222)
18 PRK10643 DNA-binding transcrip 99.6 2.2E-14 4.8E-19 106.5 14.2 96 1-100 25-120 (222)
19 PRK10161 transcriptional regul 99.6 1.8E-14 3.9E-19 108.1 13.8 97 1-99 27-123 (229)
20 PRK10529 DNA-binding transcrip 99.6 1.8E-14 4E-19 107.6 13.5 94 1-99 26-119 (225)
21 TIGR02154 PhoB phosphate regul 99.6 2.4E-14 5.2E-19 106.4 13.4 98 1-100 27-124 (226)
22 PRK10766 DNA-binding transcrip 99.6 2.4E-14 5.3E-19 106.7 13.3 95 1-100 27-121 (221)
23 PRK09468 ompR osmolarity respo 99.6 2.2E-14 4.8E-19 108.3 13.2 95 1-99 30-124 (239)
24 PRK10336 DNA-binding transcrip 99.6 3.1E-14 6.8E-19 105.6 13.4 95 1-99 25-119 (219)
25 PRK10841 hybrid sensory kinase 99.6 1.9E-14 4E-19 128.3 14.2 95 1-99 826-920 (924)
26 TIGR03787 marine_sort_RR prote 99.6 3.9E-14 8.5E-19 106.0 13.8 96 1-100 25-122 (227)
27 PRK10840 transcriptional regul 99.6 2.7E-14 5.9E-19 107.0 12.8 95 3-101 32-129 (216)
28 TIGR01387 cztR_silR_copR heavy 99.6 4.6E-14 9.9E-19 104.5 13.9 96 1-100 23-118 (218)
29 PRK11107 hybrid sensory histid 99.6 2.4E-14 5.2E-19 126.8 14.5 97 1-99 692-788 (919)
30 PRK10693 response regulator of 99.6 2.6E-14 5.6E-19 112.9 12.7 91 5-99 2-93 (303)
31 PRK09581 pleD response regulat 99.6 9.6E-15 2.1E-19 119.5 10.3 95 2-98 180-274 (457)
32 TIGR02875 spore_0_A sporulatio 99.6 4.4E-14 9.5E-19 108.8 13.2 93 4-98 32-124 (262)
33 COG3947 Response regulator con 99.6 5.6E-15 1.2E-19 113.7 7.8 92 2-99 26-117 (361)
34 PRK10430 DNA-binding transcrip 99.6 4.8E-14 1E-18 107.4 12.9 95 3-99 30-124 (239)
35 PRK10701 DNA-binding transcrip 99.6 6.4E-14 1.4E-18 106.0 13.6 95 1-100 26-120 (240)
36 PRK11083 DNA-binding response 99.6 5.7E-14 1.2E-18 104.7 13.0 96 1-100 28-123 (228)
37 PRK13856 two-component respons 99.6 7.1E-14 1.5E-18 106.1 13.4 94 1-99 26-120 (241)
38 PRK10955 DNA-binding transcrip 99.6 1.1E-13 2.4E-18 103.6 13.3 94 1-100 26-119 (232)
39 TIGR02915 PEP_resp_reg putativ 99.6 7.7E-14 1.7E-18 115.2 13.2 94 1-98 21-119 (445)
40 PRK11517 transcriptional regul 99.6 1.5E-13 3.2E-18 102.3 13.3 94 1-99 25-118 (223)
41 PRK15347 two component system 99.6 7.6E-14 1.6E-18 123.7 13.6 96 1-98 715-812 (921)
42 PRK09958 DNA-binding transcrip 99.5 1.7E-13 3.7E-18 100.8 13.1 95 1-99 25-120 (204)
43 PRK09483 response regulator; P 99.5 1.8E-13 3.8E-18 101.6 13.2 96 2-101 28-124 (217)
44 TIGR02956 TMAO_torS TMAO reduc 99.5 8.7E-14 1.9E-18 124.0 13.4 96 1-98 727-823 (968)
45 PRK11466 hybrid sensory histid 99.5 9.3E-14 2E-18 123.3 13.3 96 1-99 706-801 (914)
46 CHL00148 orf27 Ycf27; Reviewed 99.5 2.3E-13 5.1E-18 102.3 13.6 95 1-100 31-125 (240)
47 PRK14084 two-component respons 99.5 1.9E-13 4.2E-18 104.1 12.9 92 2-99 28-119 (246)
48 PRK09935 transcriptional regul 99.5 3.8E-13 8.2E-18 99.0 13.1 92 5-100 34-125 (210)
49 PRK15115 response regulator Gl 99.5 3.1E-13 6.7E-18 111.5 12.3 95 1-99 30-124 (444)
50 PRK11361 acetoacetate metaboli 99.5 4.6E-13 1E-17 110.8 12.6 94 1-98 29-122 (457)
51 PRK11091 aerobic respiration c 99.5 6.6E-13 1.4E-17 116.3 13.9 96 1-99 550-646 (779)
52 PRK10923 glnG nitrogen regulat 99.5 7.1E-13 1.5E-17 110.2 13.5 94 1-98 28-121 (469)
53 PRK09959 hybrid sensory histid 99.5 6.1E-13 1.3E-17 121.2 14.1 94 1-98 983-1076(1197)
54 PRK10365 transcriptional regul 99.5 3.7E-13 8E-18 110.8 11.5 94 1-98 30-123 (441)
55 TIGR01818 ntrC nitrogen regula 99.5 7.5E-13 1.6E-17 109.8 13.1 94 1-98 23-116 (463)
56 PRK09581 pleD response regulat 99.5 1.1E-12 2.4E-17 107.3 14.0 97 1-99 27-123 (457)
57 PRK10360 DNA-binding transcrip 99.5 1.1E-12 2.3E-17 96.0 12.4 90 3-99 30-119 (196)
58 PRK15479 transcriptional regul 99.5 2.6E-12 5.7E-17 95.2 14.1 96 1-100 25-120 (221)
59 COG4567 Response regulator con 99.5 4.4E-13 9.6E-18 94.2 9.1 90 1-94 34-123 (182)
60 PRK10710 DNA-binding transcrip 99.5 3.1E-12 6.7E-17 96.2 13.9 95 1-100 35-129 (240)
61 PRK11697 putative two-componen 99.5 1.8E-12 3.8E-17 98.1 12.4 89 3-98 30-118 (238)
62 PRK10100 DNA-binding transcrip 99.4 1.8E-12 3.9E-17 97.9 11.2 93 3-103 37-132 (216)
63 PRK12555 chemotaxis-specific m 99.4 2.8E-12 6.1E-17 102.6 12.4 92 2-98 27-130 (337)
64 PRK10403 transcriptional regul 99.4 8.1E-12 1.7E-16 91.9 12.8 91 5-99 37-127 (215)
65 PRK10610 chemotaxis regulatory 99.4 2E-11 4.4E-16 81.5 13.6 94 3-98 33-126 (129)
66 PRK10651 transcriptional regul 99.4 9.2E-12 2E-16 91.7 13.0 92 4-99 36-127 (216)
67 PRK09390 fixJ response regulat 99.4 4.1E-12 9E-17 92.3 10.9 95 1-99 28-122 (202)
68 PRK15369 two component system 99.4 1.6E-11 3.5E-16 89.6 13.0 92 4-99 33-124 (211)
69 PRK00742 chemotaxis-specific m 99.4 3.4E-11 7.4E-16 96.9 14.8 92 2-98 30-133 (354)
70 PRK13558 bacterio-opsin activa 99.4 8.5E-12 1.8E-16 107.6 11.9 94 1-98 32-127 (665)
71 PRK13435 response regulator; P 99.4 2.8E-11 6.1E-16 84.9 12.4 92 2-101 31-124 (145)
72 COG3707 AmiR Response regulato 99.3 2.6E-11 5.7E-16 88.5 10.3 92 3-99 33-124 (194)
73 PRK15411 rcsA colanic acid cap 99.3 3.9E-11 8.5E-16 90.0 11.0 95 3-102 30-127 (207)
74 cd00156 REC Signal receiver do 99.3 1.5E-10 3.2E-15 74.2 10.7 91 1-95 22-112 (113)
75 COG2201 CheB Chemotaxis respon 99.3 1.8E-10 3.9E-15 91.7 13.1 78 2-84 29-108 (350)
76 PRK13837 two-component VirA-li 99.2 1.6E-10 3.4E-15 102.3 13.5 94 1-99 722-815 (828)
77 PRK09191 two-component respons 99.2 5.4E-10 1.2E-14 85.6 12.2 91 2-99 163-255 (261)
78 PRK13557 histidine kinase; Pro 99.1 7.6E-10 1.6E-14 92.4 11.9 96 1-99 440-536 (540)
79 COG3279 LytT Response regulato 99.0 1.6E-09 3.5E-14 83.2 8.1 88 5-98 32-119 (244)
80 PRK15029 arginine decarboxylas 98.9 8.7E-09 1.9E-13 89.9 10.0 96 1-99 33-134 (755)
81 COG3706 PleD Response regulato 98.9 2E-09 4.4E-14 88.2 5.4 94 1-100 13-106 (435)
82 PRK11107 hybrid sensory histid 97.9 0.0001 2.2E-09 65.9 10.4 89 2-96 562-650 (919)
83 PF03709 OKR_DC_1_N: Orn/Lys/A 97.6 0.00051 1.1E-08 46.8 7.7 94 1-98 18-114 (115)
84 cd02071 MM_CoA_mut_B12_BD meth 97.0 0.034 7.3E-07 38.1 11.4 83 7-93 37-121 (122)
85 TIGR00640 acid_CoA_mut_C methy 97.0 0.036 7.7E-07 38.7 11.4 89 6-98 39-129 (132)
86 PRK02261 methylaspartate mutas 96.3 0.17 3.6E-06 35.5 11.2 87 8-98 42-136 (137)
87 TIGR03815 CpaE_hom_Actino heli 96.1 0.039 8.4E-07 44.0 7.9 83 2-96 3-86 (322)
88 PRK00043 thiE thiamine-phospha 96.0 0.24 5.2E-06 36.7 11.6 87 5-97 110-209 (212)
89 TIGR01501 MthylAspMutase methy 95.9 0.31 6.6E-06 34.1 11.0 88 6-97 38-133 (134)
90 TIGR02311 HpaI 2,4-dihydroxyhe 95.2 0.39 8.4E-06 37.1 10.4 84 8-94 21-105 (249)
91 TIGR03239 GarL 2-dehydro-3-deo 95.1 0.36 7.8E-06 37.3 9.9 81 10-93 23-103 (249)
92 PRK10558 alpha-dehydro-beta-de 95.0 0.43 9.3E-06 37.0 10.0 81 10-93 30-111 (256)
93 PRK10128 2-keto-3-deoxy-L-rham 94.9 0.44 9.5E-06 37.2 10.0 82 10-94 29-110 (267)
94 PF06490 FleQ: Flagellar regul 94.3 0.41 8.9E-06 32.1 7.5 67 21-95 41-107 (109)
95 cd02067 B12-binding B12 bindin 94.2 0.47 1E-05 31.9 7.8 70 8-82 38-110 (119)
96 cd04728 ThiG Thiazole synthase 93.9 1.5 3.3E-05 33.8 10.7 84 5-99 130-227 (248)
97 cd04724 Tryptophan_synthase_al 93.8 1.8 3.9E-05 33.2 11.1 80 11-95 18-125 (242)
98 PRK00208 thiG thiazole synthas 93.7 1.7 3.6E-05 33.6 10.6 84 4-98 129-226 (250)
99 PRK15399 lysine decarboxylase 93.7 0.59 1.3E-05 41.4 9.1 93 1-99 31-124 (713)
100 COG3836 HpcH 2,4-dihydroxyhept 93.6 0.95 2.1E-05 34.7 9.0 79 13-94 31-109 (255)
101 PRK09426 methylmalonyl-CoA mut 93.5 1.1 2.5E-05 39.8 10.7 88 7-98 620-709 (714)
102 PF03328 HpcH_HpaI: HpcH/HpaI 93.4 1.8 3.9E-05 32.5 10.4 86 7-95 8-106 (221)
103 PRK15400 lysine decarboxylase 93.3 0.68 1.5E-05 41.1 8.8 93 1-99 31-124 (714)
104 smart00448 REC cheY-homologous 93.0 0.34 7.3E-06 25.3 4.6 29 2-32 26-54 (55)
105 PRK05458 guanosine 5'-monophos 93.0 0.59 1.3E-05 37.6 7.5 65 10-79 100-166 (326)
106 PRK13111 trpA tryptophan synth 92.9 0.66 1.4E-05 36.0 7.5 56 38-95 77-138 (258)
107 TIGR00262 trpA tryptophan synt 92.6 0.94 2E-05 35.1 8.0 81 11-95 28-136 (256)
108 PRK01130 N-acetylmannosamine-6 92.4 3.6 7.8E-05 30.8 10.9 71 5-81 125-202 (221)
109 PRK07896 nicotinate-nucleotide 92.2 1.4 3.1E-05 34.8 8.6 70 3-79 203-272 (289)
110 cd02072 Glm_B12_BD B12 binding 92.2 2.8 6E-05 29.1 11.0 84 6-93 36-127 (128)
111 cd04727 pdxS PdxS is a subunit 92.2 2.8 6.1E-05 33.0 10.0 61 36-99 181-248 (283)
112 TIGR00693 thiE thiamine-phosph 92.2 1.9 4.2E-05 31.5 9.0 70 5-80 102-179 (196)
113 TIGR00343 pyridoxal 5'-phospha 91.6 3.3 7.2E-05 32.6 9.8 61 36-99 184-251 (287)
114 TIGR00007 phosphoribosylformim 91.5 2.2 4.9E-05 32.1 8.9 68 8-80 146-217 (230)
115 cd00452 KDPG_aldolase KDPG and 91.3 2.2 4.7E-05 31.3 8.3 69 5-81 103-171 (190)
116 PF01729 QRPTase_C: Quinolinat 91.0 1.7 3.7E-05 31.6 7.3 69 4-79 85-153 (169)
117 PRK12704 phosphodiesterase; Pr 90.8 0.72 1.6E-05 39.5 6.0 45 54-98 251-297 (520)
118 PF02310 B12-binding: B12 bind 90.5 3.4 7.5E-05 27.4 8.2 69 8-81 39-111 (121)
119 PLN02591 tryptophan synthase 90.4 2 4.4E-05 33.2 7.7 56 37-95 66-127 (250)
120 PLN02274 inosine-5'-monophosph 90.4 2.5 5.3E-05 36.1 8.8 68 8-80 248-316 (505)
121 TIGR00736 nifR3_rel_arch TIM-b 90.3 3.5 7.5E-05 31.6 8.8 65 11-79 152-218 (231)
122 PRK00748 1-(5-phosphoribosyl)- 90.3 3.2 6.9E-05 31.2 8.7 67 9-80 148-219 (233)
123 cd04723 HisA_HisF Phosphoribos 90.0 1.3 2.8E-05 33.7 6.3 68 7-80 146-217 (233)
124 PRK07428 nicotinate-nucleotide 90.0 2.7 5.9E-05 33.2 8.2 70 4-80 201-270 (288)
125 cd00564 TMP_TenI Thiamine mono 89.9 4.3 9.4E-05 29.2 8.9 69 6-81 102-178 (196)
126 cd04729 NanE N-acetylmannosami 89.7 4.8 0.0001 30.1 9.2 71 5-81 129-206 (219)
127 TIGR01303 IMP_DH_rel_1 IMP deh 89.7 3 6.4E-05 35.4 8.7 68 7-79 224-292 (475)
128 PRK06096 molybdenum transport 89.5 3.3 7.1E-05 32.7 8.3 71 3-80 193-263 (284)
129 PRK07695 transcriptional regul 89.5 6.8 0.00015 28.9 10.8 86 5-97 101-198 (201)
130 CHL00200 trpA tryptophan synth 89.5 2 4.3E-05 33.5 7.0 56 37-95 79-140 (263)
131 COG0159 TrpA Tryptophan syntha 89.3 2.2 4.8E-05 33.3 7.1 57 38-97 82-144 (265)
132 PRK08385 nicotinate-nucleotide 89.0 4.9 0.00011 31.6 9.0 72 4-80 187-258 (278)
133 COG2185 Sbm Methylmalonyl-CoA 88.9 6.5 0.00014 27.8 10.4 90 5-98 48-139 (143)
134 KOG4175 Tryptophan synthase al 88.8 1.3 2.8E-05 33.3 5.3 39 51-89 94-138 (268)
135 PRK06843 inosine 5-monophospha 88.8 4 8.6E-05 33.9 8.7 56 21-79 164-220 (404)
136 TIGR01305 GMP_reduct_1 guanosi 88.4 4.2 9.1E-05 32.9 8.3 57 22-81 121-178 (343)
137 PRK05848 nicotinate-nucleotide 88.1 10 0.00022 29.8 10.2 68 4-80 187-256 (273)
138 TIGR01334 modD putative molybd 88.1 8.2 0.00018 30.4 9.6 69 4-79 193-261 (277)
139 PRK05567 inosine 5'-monophosph 88.0 3.7 8E-05 34.8 8.3 65 10-79 230-295 (486)
140 TIGR01302 IMP_dehydrog inosine 87.8 3.5 7.6E-05 34.6 8.0 65 9-79 226-291 (450)
141 TIGR01037 pyrD_sub1_fam dihydr 87.3 12 0.00027 29.3 10.6 60 39-101 224-289 (300)
142 PRK04180 pyridoxal biosynthesi 87.1 3.3 7.2E-05 32.7 6.9 62 36-100 190-258 (293)
143 cd01573 modD_like ModD; Quinol 86.9 6.4 0.00014 30.8 8.5 70 4-80 188-257 (272)
144 PF00478 IMPDH: IMP dehydrogen 86.8 4.9 0.00011 32.8 7.9 69 8-81 108-177 (352)
145 TIGR03151 enACPred_II putative 86.6 10 0.00022 30.2 9.6 71 5-81 115-190 (307)
146 TIGR00734 hisAF_rel hisA/hisF 86.6 8.7 0.00019 29.0 8.9 68 8-80 142-212 (221)
147 TIGR02370 pyl_corrinoid methyl 86.6 6.3 0.00014 29.2 8.0 69 8-81 123-193 (197)
148 cd02070 corrinoid_protein_B12- 86.4 6.5 0.00014 29.1 8.0 70 8-82 121-192 (201)
149 PRK13587 1-(5-phosphoribosyl)- 86.4 3.9 8.4E-05 31.2 6.9 67 10-81 151-221 (234)
150 cd02069 methionine_synthase_B1 86.1 5.4 0.00012 30.0 7.4 71 8-82 127-202 (213)
151 cd00381 IMPDH IMPDH: The catal 86.0 7.8 0.00017 31.1 8.7 66 10-80 96-162 (325)
152 PRK02083 imidazole glycerol ph 86.0 14 0.00029 28.4 11.3 79 9-93 155-245 (253)
153 TIGR00735 hisF imidazoleglycer 85.5 15 0.00032 28.3 11.3 80 8-93 156-247 (254)
154 PF02581 TMP-TENI: Thiamine mo 85.3 9.3 0.0002 27.7 8.2 69 4-79 100-175 (180)
155 cd02068 radical_SAM_B12_BD B12 85.0 9.6 0.00021 25.8 8.3 86 8-97 26-112 (127)
156 PF00290 Trp_syntA: Tryptophan 84.8 2.3 4.9E-05 33.2 5.0 76 10-89 27-130 (259)
157 PRK05096 guanosine 5'-monophos 84.8 6.4 0.00014 31.9 7.6 54 22-78 122-176 (346)
158 TIGR01859 fruc_bis_ald_ fructo 84.8 17 0.00038 28.6 10.3 86 5-96 151-245 (282)
159 cd00331 IGPS Indole-3-glycerol 84.8 14 0.0003 27.5 9.9 72 21-95 43-117 (217)
160 PRK06106 nicotinate-nucleotide 84.6 18 0.00038 28.6 9.9 66 4-79 199-264 (281)
161 cd04726 KGPDC_HPS 3-Keto-L-gul 84.6 7.6 0.00016 28.4 7.6 73 8-84 11-87 (202)
162 PRK07259 dihydroorotate dehydr 84.2 16 0.00035 28.7 9.7 60 38-100 223-288 (301)
163 PRK06806 fructose-bisphosphate 84.2 19 0.0004 28.4 10.4 88 5-97 151-246 (281)
164 cd04731 HisF The cyclase subun 83.5 6.6 0.00014 29.8 7.1 71 6-81 26-100 (243)
165 PF04131 NanE: Putative N-acet 83.1 14 0.0003 27.5 8.2 69 6-81 99-173 (192)
166 PRK07807 inosine 5-monophospha 83.1 7.8 0.00017 32.9 7.8 67 8-79 227-294 (479)
167 PRK04128 1-(5-phosphoribosyl)- 82.9 18 0.0004 27.4 10.3 69 7-81 30-102 (228)
168 TIGR01306 GMP_reduct_2 guanosi 82.8 9.8 0.00021 30.6 7.9 56 23-81 109-165 (321)
169 PRK08185 hypothetical protein; 82.4 13 0.00028 29.4 8.4 67 6-78 148-225 (283)
170 COG2109 BtuR ATP:corrinoid ade 82.1 10 0.00023 28.2 7.2 55 11-70 113-172 (198)
171 COG4999 Uncharacterized domain 82.1 3.1 6.8E-05 28.6 4.2 70 21-92 50-121 (140)
172 cd02922 FCB2_FMN Flavocytochro 82.1 14 0.00031 29.9 8.7 40 38-81 202-241 (344)
173 PF04131 NanE: Putative N-acet 82.0 7.5 0.00016 28.9 6.5 65 2-76 47-114 (192)
174 PRK04128 1-(5-phosphoribosyl)- 81.8 11 0.00024 28.6 7.6 66 8-80 144-210 (228)
175 COG0157 NadC Nicotinate-nucleo 81.7 23 0.0005 27.9 9.4 67 4-78 193-259 (280)
176 TIGR00642 mmCoA_mut_beta methy 81.7 21 0.00045 31.4 10.1 83 6-96 532-616 (619)
177 PRK01033 imidazole glycerol ph 81.6 8.2 0.00018 29.8 7.0 67 8-79 153-224 (258)
178 PTZ00314 inosine-5'-monophosph 81.6 13 0.00028 31.7 8.7 56 21-79 252-308 (495)
179 PF01729 QRPTase_C: Quinolinat 81.4 12 0.00025 27.2 7.3 58 37-97 66-123 (169)
180 CHL00162 thiG thiamin biosynth 81.4 21 0.00046 27.8 8.9 57 39-98 179-240 (267)
181 TIGR01163 rpe ribulose-phospha 81.3 19 0.0004 26.4 10.3 80 9-93 13-98 (210)
182 TIGR00735 hisF imidazoleglycer 81.1 14 0.0003 28.4 8.1 70 7-81 30-103 (254)
183 cd04730 NPD_like 2-Nitropropan 80.9 21 0.00045 26.7 9.8 70 6-81 109-185 (236)
184 COG0352 ThiE Thiamine monophos 80.9 22 0.00047 26.9 10.8 67 5-78 110-183 (211)
185 PRK09016 quinolinate phosphori 80.9 23 0.00049 28.2 9.2 68 3-80 212-279 (296)
186 PF02887 PK_C: Pyruvate kinase 80.7 9.5 0.00021 25.5 6.3 73 21-101 15-89 (117)
187 cd04740 DHOD_1B_like Dihydroor 80.3 26 0.00056 27.4 10.1 59 38-99 220-284 (296)
188 cd00331 IGPS Indole-3-glycerol 80.2 15 0.00034 27.2 7.9 71 5-80 127-200 (217)
189 cd04726 KGPDC_HPS 3-Keto-L-gul 80.1 20 0.00044 26.1 8.8 71 4-81 111-186 (202)
190 PF14606 Lipase_GDSL_3: GDSL-l 80.1 2 4.2E-05 31.6 2.9 47 11-61 50-102 (178)
191 PRK05286 dihydroorotate dehydr 79.2 14 0.0003 29.9 7.8 60 38-98 276-342 (344)
192 PRK07455 keto-hydroxyglutarate 79.2 22 0.00048 26.1 8.3 66 6-78 112-177 (187)
193 cd04732 HisA HisA. Phosphorib 79.1 9.3 0.0002 28.6 6.5 68 8-80 147-218 (234)
194 TIGR00708 cobA cob(I)alamin ad 79.0 13 0.00027 27.2 6.8 53 13-70 90-147 (173)
195 cd00561 CobA_CobO_BtuR ATP:cor 78.8 16 0.00035 26.3 7.2 47 21-70 94-145 (159)
196 PF03060 NMO: Nitronate monoox 78.8 21 0.00045 28.7 8.7 72 3-80 140-218 (330)
197 PRK00994 F420-dependent methyl 78.6 13 0.00029 28.7 6.9 63 16-84 56-118 (277)
198 COG1411 Uncharacterized protei 78.6 17 0.00037 27.4 7.3 72 6-81 136-210 (229)
199 PRK08072 nicotinate-nucleotide 78.4 24 0.00051 27.8 8.6 67 4-80 193-259 (277)
200 PRK05718 keto-hydroxyglutarate 78.4 26 0.00057 26.4 9.4 85 3-93 20-105 (212)
201 PLN02898 HMP-P kinase/thiamin- 78.4 28 0.00061 29.6 9.8 87 5-98 396-497 (502)
202 PRK07414 cob(I)yrinic acid a,c 78.1 14 0.0003 27.2 6.8 53 12-69 107-164 (178)
203 COG3010 NanE Putative N-acetyl 78.0 20 0.00044 27.1 7.6 82 6-94 134-224 (229)
204 PRK05986 cob(I)alamin adenolsy 77.8 7.1 0.00015 29.0 5.3 53 12-69 107-164 (191)
205 PRK05742 nicotinate-nucleotide 77.5 26 0.00057 27.5 8.7 67 4-80 194-260 (277)
206 PRK06512 thiamine-phosphate py 77.5 29 0.00062 26.3 10.3 86 6-98 118-214 (221)
207 PF07688 KaiA: KaiA domain; I 77.2 6.9 0.00015 30.5 5.1 95 1-100 25-121 (283)
208 PRK07998 gatY putative fructos 77.1 34 0.00075 27.0 9.7 85 6-96 152-244 (283)
209 TIGR03572 WbuZ glycosyl amidat 77.0 13 0.00029 27.9 6.8 70 7-81 30-103 (232)
210 PF01993 MTD: methylene-5,6,7, 76.8 9.5 0.00021 29.5 5.7 64 16-85 55-118 (276)
211 PF05690 ThiG: Thiazole biosyn 76.8 5.5 0.00012 30.6 4.5 57 38-97 164-225 (247)
212 PRK13125 trpA tryptophan synth 76.7 31 0.00068 26.3 10.1 78 11-94 22-124 (244)
213 KOG2550 IMP dehydrogenase/GMP 76.4 13 0.00029 31.0 6.9 67 7-78 250-317 (503)
214 PLN02775 Probable dihydrodipic 76.4 36 0.00079 26.9 9.4 73 7-86 66-139 (286)
215 TIGR02026 BchE magnesium-proto 76.0 26 0.00056 29.8 8.9 85 9-98 52-138 (497)
216 PRK02615 thiamine-phosphate py 75.8 42 0.00091 27.4 10.9 86 5-97 246-343 (347)
217 cd03823 GT1_ExpE7_like This fa 75.4 34 0.00074 26.2 9.2 75 10-97 254-328 (359)
218 PRK00278 trpC indole-3-glycero 75.3 36 0.00078 26.4 10.3 81 3-89 164-253 (260)
219 PF00977 His_biosynth: Histidi 74.9 20 0.00043 27.2 7.2 69 8-80 148-219 (229)
220 PRK08649 inosine 5-monophospha 74.9 42 0.00091 27.6 9.5 66 8-80 142-214 (368)
221 PRK06801 hypothetical protein; 74.8 40 0.00087 26.7 9.9 87 5-96 154-248 (286)
222 PRK07315 fructose-bisphosphate 74.8 41 0.00088 26.7 10.3 87 6-97 153-248 (293)
223 COG1927 Mtd Coenzyme F420-depe 74.7 22 0.00047 27.0 7.1 63 14-82 54-117 (277)
224 PRK07028 bifunctional hexulose 74.6 48 0.001 27.6 10.0 86 11-102 122-216 (430)
225 TIGR03128 RuMP_HxlA 3-hexulose 74.0 30 0.00066 25.3 7.9 73 7-83 9-85 (206)
226 PRK06543 nicotinate-nucleotide 73.9 42 0.00091 26.5 9.8 66 4-79 198-263 (281)
227 PRK12738 kbaY tagatose-bisphos 73.9 42 0.00092 26.5 10.6 85 6-96 154-247 (286)
228 COG0157 NadC Nicotinate-nucleo 73.4 27 0.00058 27.6 7.6 70 23-95 158-229 (280)
229 cd04731 HisF The cyclase subun 73.4 37 0.00081 25.7 9.0 65 10-80 152-222 (243)
230 PRK07764 DNA polymerase III su 73.3 19 0.00041 32.8 7.7 75 21-99 119-195 (824)
231 PF02572 CobA_CobO_BtuR: ATP:c 73.3 16 0.00034 26.7 6.0 47 21-70 95-146 (172)
232 cd02809 alpha_hydroxyacid_oxid 73.1 36 0.00077 26.8 8.5 64 11-80 133-199 (299)
233 cd04722 TIM_phosphate_binding 73.1 27 0.00058 24.6 7.4 57 21-80 135-198 (200)
234 PRK01033 imidazole glycerol ph 72.4 21 0.00046 27.5 7.0 70 7-81 30-103 (258)
235 PRK13125 trpA tryptophan synth 71.9 34 0.00074 26.1 8.0 67 11-82 143-215 (244)
236 COG0269 SgbH 3-hexulose-6-phos 71.5 42 0.00092 25.5 9.7 92 4-99 114-215 (217)
237 PF01408 GFO_IDH_MocA: Oxidore 71.5 13 0.00028 24.5 5.0 38 61-98 73-112 (120)
238 cd02911 arch_FMN Archeal FMN-b 71.5 43 0.00093 25.5 8.8 65 8-79 153-218 (233)
239 TIGR03572 WbuZ glycosyl amidat 71.3 41 0.00089 25.2 9.2 66 9-80 155-226 (232)
240 PLN02274 inosine-5'-monophosph 71.3 41 0.00089 28.8 8.9 70 6-81 297-380 (505)
241 PLN02716 nicotinate-nucleotide 71.3 52 0.0011 26.4 9.8 73 4-79 208-288 (308)
242 PRK15484 lipopolysaccharide 1, 71.3 53 0.0011 26.5 9.4 67 23-98 277-344 (380)
243 TIGR01304 IMP_DH_rel_2 IMP deh 71.2 55 0.0012 26.9 9.3 65 8-79 143-214 (369)
244 PRK13586 1-(5-phosphoribosyl)- 71.2 43 0.00094 25.5 8.7 67 8-80 147-217 (232)
245 PF01081 Aldolase: KDPG and KH 71.1 21 0.00046 26.6 6.4 66 21-91 32-97 (196)
246 PRK07896 nicotinate-nucleotide 71.0 30 0.00066 27.4 7.6 53 38-94 187-239 (289)
247 cd01844 SGNH_hydrolase_like_6 70.6 14 0.00031 26.2 5.4 46 14-63 51-104 (177)
248 cd02809 alpha_hydroxyacid_oxid 70.5 51 0.0011 26.0 9.5 73 7-83 181-259 (299)
249 PRK12656 fructose-6-phosphate 70.3 45 0.00098 25.3 9.6 71 21-100 80-159 (222)
250 cd03114 ArgK-like The function 70.2 28 0.0006 24.4 6.7 44 9-61 80-123 (148)
251 PRK13585 1-(5-phosphoribosyl)- 70.2 44 0.00096 25.2 8.9 79 8-91 150-238 (241)
252 PRK09016 quinolinate phosphori 69.9 31 0.00067 27.5 7.4 53 38-94 196-248 (296)
253 PRK13585 1-(5-phosphoribosyl)- 69.9 25 0.00053 26.6 6.8 71 7-82 32-106 (241)
254 TIGR03151 enACPred_II putative 69.5 55 0.0012 26.0 8.9 62 8-81 75-136 (307)
255 COG2022 ThiG Uncharacterized e 69.5 12 0.00026 28.9 4.7 56 39-97 172-232 (262)
256 PF04309 G3P_antiterm: Glycero 69.5 6.3 0.00014 28.9 3.2 62 9-79 106-167 (175)
257 TIGR00078 nadC nicotinate-nucl 69.3 50 0.0011 25.8 8.4 67 4-80 183-249 (265)
258 PRK06552 keto-hydroxyglutarate 69.2 46 0.001 25.0 8.6 86 3-92 18-105 (213)
259 cd03818 GT1_ExpC_like This fam 69.1 48 0.001 26.7 8.7 65 24-98 302-366 (396)
260 TIGR01361 DAHP_synth_Bsub phos 69.0 44 0.00096 25.9 8.1 73 9-85 148-234 (260)
261 cd02810 DHOD_DHPD_FMN Dihydroo 68.7 38 0.00082 26.3 7.8 39 38-78 230-269 (289)
262 cd01568 QPRTase_NadC Quinolina 68.4 55 0.0012 25.5 9.0 68 4-80 186-254 (269)
263 PRK06978 nicotinate-nucleotide 68.0 60 0.0013 25.9 9.7 66 4-79 210-275 (294)
264 PRK09982 universal stress prot 68.0 18 0.0004 24.8 5.3 48 7-59 90-138 (142)
265 PLN02645 phosphoglycolate phos 67.8 42 0.00092 26.5 7.9 51 22-76 27-87 (311)
266 COG1908 FrhD Coenzyme F420-red 67.6 8.3 0.00018 26.5 3.2 27 55-81 34-60 (132)
267 cd02801 DUS_like_FMN Dihydrour 67.6 48 0.001 24.6 8.4 64 10-78 141-210 (231)
268 PRK05458 guanosine 5'-monophos 67.6 59 0.0013 26.3 8.7 70 6-81 148-230 (326)
269 PRK06552 keto-hydroxyglutarate 67.5 51 0.0011 24.8 8.2 84 6-97 116-207 (213)
270 PRK06559 nicotinate-nucleotide 67.3 62 0.0013 25.7 9.6 66 4-79 202-267 (290)
271 PF01116 F_bP_aldolase: Fructo 67.2 33 0.00072 27.1 7.1 87 6-97 154-251 (287)
272 PRK09140 2-dehydro-3-deoxy-6-p 66.7 51 0.0011 24.6 9.5 87 3-93 15-101 (206)
273 PRK11840 bifunctional sulfur c 66.7 25 0.00055 28.3 6.3 88 4-98 203-300 (326)
274 PF13941 MutL: MutL protein 66.5 81 0.0018 26.8 10.5 90 8-101 112-212 (457)
275 cd00429 RPE Ribulose-5-phospha 66.4 27 0.00059 25.4 6.3 68 10-81 118-194 (211)
276 cd01572 QPRTase Quinolinate ph 66.2 61 0.0013 25.3 8.5 66 4-79 187-252 (268)
277 PRK08999 hypothetical protein; 65.9 63 0.0014 25.4 8.7 68 5-79 232-306 (312)
278 PTZ00170 D-ribulose-5-phosphat 65.9 15 0.00032 27.9 4.8 75 22-98 138-223 (228)
279 KOG0538 Glycolate oxidase [Ene 65.7 27 0.00059 28.1 6.2 55 37-95 211-275 (363)
280 PF01959 DHQS: 3-dehydroquinat 65.6 60 0.0013 26.6 8.3 72 22-97 96-169 (354)
281 TIGR01064 pyruv_kin pyruvate k 65.6 85 0.0018 26.7 9.9 71 21-99 372-444 (473)
282 cd01141 TroA_d Periplasmic bin 65.4 26 0.00056 25.0 5.9 76 14-99 63-140 (186)
283 PRK11359 cyclic-di-GMP phospho 65.3 41 0.00089 29.8 8.1 87 6-95 699-794 (799)
284 TIGR01668 YqeG_hyp_ppase HAD s 65.3 47 0.001 23.7 9.3 74 13-93 17-102 (170)
285 PRK07428 nicotinate-nucleotide 65.3 52 0.0011 26.1 7.8 55 38-95 183-237 (288)
286 PRK05835 fructose-bisphosphate 65.3 56 0.0012 26.2 8.0 68 6-79 154-253 (307)
287 cd01143 YvrC Periplasmic bindi 65.2 29 0.00063 24.8 6.1 75 13-98 53-127 (195)
288 PRK13397 3-deoxy-7-phosphohept 65.2 48 0.001 25.7 7.4 71 10-85 139-224 (250)
289 TIGR01452 PGP_euk phosphoglyco 65.2 35 0.00076 26.4 6.9 49 22-76 1-61 (279)
290 cd04723 HisA_HisF Phosphoribos 64.9 45 0.00097 25.3 7.3 87 6-99 34-123 (233)
291 cd02065 B12-binding_like B12 b 64.8 31 0.00068 22.7 5.9 50 8-61 38-89 (125)
292 COG0107 HisF Imidazoleglycerol 64.4 46 0.001 25.7 7.0 86 6-92 29-116 (256)
293 PRK12857 fructose-1,6-bisphosp 64.3 63 0.0014 25.5 8.1 68 6-79 154-230 (284)
294 TIGR01858 tag_bisphos_ald clas 64.3 70 0.0015 25.3 10.1 85 6-96 152-245 (282)
295 cd00516 PRTase_typeII Phosphor 64.2 42 0.00091 26.0 7.2 72 5-79 190-265 (281)
296 PF06073 DUF934: Bacterial pro 64.1 42 0.00091 22.6 9.4 73 21-95 18-92 (110)
297 PRK00748 1-(5-phosphoribosyl)- 64.1 58 0.0013 24.3 8.6 71 7-82 30-104 (233)
298 PRK07003 DNA polymerase III su 64.0 28 0.00061 31.6 6.7 74 22-99 119-194 (830)
299 PF13380 CoA_binding_2: CoA bi 63.3 4.2 9.2E-05 27.4 1.3 73 9-83 16-88 (116)
300 cd03820 GT1_amsD_like This fam 63.3 62 0.0013 24.4 9.6 67 23-98 253-319 (348)
301 PRK06843 inosine 5-monophospha 63.2 61 0.0013 27.0 8.1 73 5-80 201-284 (404)
302 PRK09195 gatY tagatose-bisphos 63.1 64 0.0014 25.5 7.9 85 6-96 154-247 (284)
303 PF02254 TrkA_N: TrkA-N domain 63.0 38 0.00082 22.0 6.0 55 21-80 61-115 (116)
304 PF00218 IGPS: Indole-3-glycer 62.9 52 0.0011 25.5 7.3 74 3-81 162-238 (254)
305 PLN02871 UDP-sulfoquinovose:DA 62.9 70 0.0015 26.6 8.7 74 10-97 323-399 (465)
306 PRK14114 1-(5-phosphoribosyl)- 62.7 66 0.0014 24.7 7.9 68 8-80 145-222 (241)
307 PRK13695 putative NTPase; Prov 62.6 53 0.0011 23.3 7.5 74 21-96 95-172 (174)
308 TIGR01459 HAD-SF-IIA-hyp4 HAD- 62.4 36 0.00079 25.7 6.4 53 21-77 6-67 (242)
309 PRK05848 nicotinate-nucleotide 62.3 52 0.0011 25.8 7.3 54 38-95 169-223 (273)
310 PRK06978 nicotinate-nucleotide 62.1 49 0.0011 26.3 7.1 69 23-95 176-246 (294)
311 PRK13399 fructose-1,6-bisphosp 61.9 87 0.0019 25.6 9.4 70 5-79 171-275 (347)
312 smart00052 EAL Putative diguan 61.5 20 0.00044 26.4 4.9 77 6-85 154-239 (241)
313 COG2200 Rtn c-di-GMP phosphodi 61.5 69 0.0015 24.6 7.9 87 5-94 156-251 (256)
314 PRK07709 fructose-bisphosphate 61.4 80 0.0017 25.0 10.0 85 6-96 155-248 (285)
315 PRK06559 nicotinate-nucleotide 61.4 47 0.001 26.4 6.9 69 23-95 167-238 (290)
316 PRK12595 bifunctional 3-deoxy- 61.3 60 0.0013 26.6 7.7 69 9-81 241-323 (360)
317 COG0167 PyrD Dihydroorotate de 61.2 67 0.0014 25.8 7.8 64 38-102 228-298 (310)
318 PRK02083 imidazole glycerol ph 61.1 72 0.0016 24.3 7.9 72 6-82 29-104 (253)
319 PRK14024 phosphoribosyl isomer 61.0 36 0.00078 25.9 6.2 77 10-91 149-238 (241)
320 PRK13523 NADPH dehydrogenase N 60.8 49 0.0011 26.7 7.2 62 12-78 232-301 (337)
321 PRK08385 nicotinate-nucleotide 60.6 54 0.0012 25.8 7.1 55 39-97 171-225 (278)
322 PRK07565 dihydroorotate dehydr 60.4 87 0.0019 25.1 9.3 59 39-100 229-294 (334)
323 TIGR03471 HpnJ hopanoid biosyn 60.3 73 0.0016 26.8 8.4 66 21-89 67-134 (472)
324 PRK08610 fructose-bisphosphate 60.3 84 0.0018 24.9 9.8 85 6-96 155-248 (286)
325 PRK14949 DNA polymerase III su 60.1 38 0.00083 31.3 6.9 76 21-99 118-194 (944)
326 PRK07455 keto-hydroxyglutarate 59.7 67 0.0014 23.5 8.4 83 3-89 17-99 (187)
327 cd04743 NPD_PKS 2-Nitropropane 59.6 77 0.0017 25.5 8.0 60 9-81 71-130 (320)
328 PRK13398 3-deoxy-7-phosphohept 59.6 47 0.001 25.9 6.6 68 10-81 151-232 (266)
329 cd02940 DHPD_FMN Dihydropyrimi 59.4 67 0.0014 25.3 7.6 41 38-79 239-279 (299)
330 PRK00366 ispG 4-hydroxy-3-meth 59.4 59 0.0013 26.6 7.2 73 21-99 54-126 (360)
331 PRK05581 ribulose-phosphate 3- 59.4 69 0.0015 23.6 7.7 83 9-94 121-216 (220)
332 PRK07107 inosine 5-monophospha 59.4 88 0.0019 26.9 8.7 56 21-80 253-311 (502)
333 PRK07413 hypothetical protein; 59.3 48 0.001 27.4 6.8 53 13-70 118-175 (382)
334 cd04739 DHOD_like Dihydroorota 59.2 91 0.002 24.9 10.1 61 38-101 226-293 (325)
335 cd04949 GT1_gtfA_like This fam 59.2 44 0.00095 26.4 6.7 67 23-98 279-345 (372)
336 PF08415 NRPS: Nonribosomal pe 59.0 18 0.00038 21.1 3.3 31 34-64 3-35 (58)
337 PRK06096 molybdenum transport 58.9 63 0.0014 25.6 7.2 53 39-95 178-230 (284)
338 COG2070 Dioxygenases related t 58.8 72 0.0016 25.8 7.8 70 4-78 132-210 (336)
339 COG0763 LpxB Lipid A disacchar 58.7 41 0.00089 27.8 6.3 46 11-62 76-121 (381)
340 PRK10060 RNase II stability mo 58.6 68 0.0015 28.3 8.2 87 6-95 562-657 (663)
341 PF09936 Methyltrn_RNA_4: SAM- 58.6 56 0.0012 24.1 6.4 75 3-85 84-162 (185)
342 PRK06106 nicotinate-nucleotide 58.5 72 0.0016 25.2 7.5 54 38-95 181-235 (281)
343 PRK06015 keto-hydroxyglutarate 58.5 75 0.0016 23.8 9.3 85 3-93 9-94 (201)
344 PRK14961 DNA polymerase III su 58.4 58 0.0013 26.4 7.3 74 22-99 119-194 (363)
345 cd04738 DHOD_2_like Dihydrooro 58.4 62 0.0013 25.9 7.3 40 38-78 267-306 (327)
346 cd01572 QPRTase Quinolinate ph 58.0 55 0.0012 25.5 6.8 53 40-95 171-223 (268)
347 TIGR01334 modD putative molybd 57.8 76 0.0016 25.0 7.5 53 39-95 177-229 (277)
348 PRK04302 triosephosphate isome 57.8 78 0.0017 23.7 9.1 73 4-81 119-202 (223)
349 PRK01021 lpxB lipid-A-disaccha 57.5 42 0.0009 29.5 6.5 47 10-62 300-346 (608)
350 TIGR01919 hisA-trpF 1-(5-phosp 57.3 86 0.0019 24.0 8.4 68 8-80 150-224 (243)
351 PF10237 N6-adenineMlase: Prob 57.1 24 0.00052 25.4 4.3 54 21-78 85-142 (162)
352 TIGR01182 eda Entner-Doudoroff 57.1 81 0.0017 23.6 9.3 85 3-93 13-98 (204)
353 PLN02461 Probable pyruvate kin 56.6 1.3E+02 0.0028 26.0 9.6 72 21-99 394-484 (511)
354 COG0134 TrpC Indole-3-glycerol 56.5 94 0.002 24.2 7.7 72 3-81 160-236 (254)
355 COG1856 Uncharacterized homolo 56.4 72 0.0016 24.6 6.8 83 8-93 167-264 (275)
356 cd01573 modD_like ModD; Quinol 56.2 60 0.0013 25.4 6.8 54 38-95 171-224 (272)
357 PRK14964 DNA polymerase III su 56.1 70 0.0015 27.4 7.5 74 22-99 116-191 (491)
358 PRK05742 nicotinate-nucleotide 56.0 85 0.0018 24.7 7.5 52 39-94 178-229 (277)
359 PRK09206 pyruvate kinase; Prov 56.0 1.3E+02 0.0028 25.7 9.4 70 21-98 369-439 (470)
360 PF07364 DUF1485: Protein of u 55.9 18 0.00039 28.7 3.8 85 10-97 85-178 (292)
361 cd06346 PBP1_ABC_ligand_bindin 55.9 65 0.0014 25.0 7.0 53 7-65 179-231 (312)
362 cd01568 QPRTase_NadC Quinolina 55.9 72 0.0016 24.9 7.1 53 40-95 170-222 (269)
363 cd01948 EAL EAL domain. This d 55.8 22 0.00047 26.2 4.2 77 6-85 153-238 (240)
364 KOG1185 Thiamine pyrophosphate 55.7 58 0.0013 28.0 6.8 72 21-99 473-549 (571)
365 COG0489 Mrp ATPases involved i 55.5 48 0.001 25.7 6.1 43 11-61 157-199 (265)
366 PF03060 NMO: Nitronate monoox 55.4 1.1E+02 0.0023 24.6 8.7 59 12-81 105-163 (330)
367 TIGR01521 FruBisAldo_II_B fruc 55.4 1.1E+02 0.0025 24.9 10.0 68 6-78 170-272 (347)
368 cd01149 HutB Hemin binding pro 55.3 46 0.001 24.7 5.9 74 14-98 52-126 (235)
369 TIGR03449 mycothiol_MshA UDP-N 55.1 1.1E+02 0.0024 24.6 9.6 66 23-98 303-368 (405)
370 PRK12737 gatY tagatose-bisphos 55.1 1E+02 0.0023 24.3 10.4 85 6-96 154-247 (284)
371 TIGR00737 nifR3_yhdG putative 55.1 1.1E+02 0.0023 24.4 8.9 65 10-79 150-220 (319)
372 PRK12724 flagellar biosynthesi 55.0 1.2E+02 0.0025 25.6 8.5 74 7-84 286-370 (432)
373 PRK02290 3-dehydroquinate synt 54.9 1.2E+02 0.0025 24.8 8.8 70 21-95 87-158 (344)
374 cd00381 IMPDH IMPDH: The catal 54.9 89 0.0019 25.1 7.7 72 6-80 143-225 (325)
375 cd04962 GT1_like_5 This family 54.7 1E+02 0.0022 24.1 9.3 65 23-97 271-335 (371)
376 PRK13111 trpA tryptophan synth 54.6 1E+02 0.0022 24.0 8.4 62 11-79 108-169 (258)
377 PRK06801 hypothetical protein; 54.5 1.1E+02 0.0023 24.3 8.6 53 51-103 73-128 (286)
378 KOG1601 GATA-4/5/6 transcripti 54.1 4 8.8E-05 31.0 -0.1 64 21-84 62-125 (340)
379 COG2216 KdpB High-affinity K+ 54.0 33 0.00071 29.8 5.1 51 39-94 454-504 (681)
380 COG0647 NagD Predicted sugar p 54.0 37 0.0008 26.6 5.2 39 21-63 6-51 (269)
381 PRK11572 copper homeostasis pr 54.0 93 0.002 24.1 7.3 70 5-79 126-196 (248)
382 PRK09922 UDP-D-galactose:(gluc 53.8 1E+02 0.0023 24.4 8.0 56 37-100 271-326 (359)
383 PRK08318 dihydropyrimidine deh 53.7 1.3E+02 0.0028 24.9 10.2 63 38-100 239-308 (420)
384 COG3684 LacD Tagatose-1,6-bisp 53.7 43 0.00092 26.4 5.3 59 21-81 198-263 (306)
385 PRK10415 tRNA-dihydrouridine s 53.7 1.1E+02 0.0025 24.4 8.4 66 9-79 151-222 (321)
386 PRK08745 ribulose-phosphate 3- 53.6 68 0.0015 24.3 6.5 74 22-95 132-218 (223)
387 TIGR02397 dnaX_nterm DNA polym 53.5 88 0.0019 24.8 7.5 73 23-99 118-192 (355)
388 cd01571 NAPRTase_B Nicotinate 53.4 91 0.002 24.8 7.5 68 9-78 198-270 (302)
389 PRK12290 thiE thiamine-phospha 53.4 1.4E+02 0.003 25.3 10.7 93 5-101 306-417 (437)
390 PRK08673 3-deoxy-7-phosphohept 53.3 1E+02 0.0023 25.0 7.8 66 10-79 217-295 (335)
391 cd08572 GDPD_GDE5_like Glycero 53.1 82 0.0018 24.8 7.1 30 51-80 260-290 (293)
392 PRK00230 orotidine 5'-phosphat 53.0 98 0.0021 23.4 8.0 85 7-97 12-103 (230)
393 TIGR01588 citE citrate lyase, 53.0 1.1E+02 0.0024 24.0 10.5 79 12-93 16-105 (288)
394 PRK11815 tRNA-dihydrouridine s 52.9 1.2E+02 0.0026 24.4 8.3 64 11-79 155-231 (333)
395 PRK14974 cell division protein 52.9 1.1E+02 0.0024 24.8 7.9 72 11-84 213-290 (336)
396 cd04733 OYE_like_2_FMN Old yel 52.7 1E+02 0.0022 24.7 7.7 39 38-79 281-319 (338)
397 KOG1562 Spermidine synthase [A 52.6 34 0.00075 27.4 4.8 33 6-40 181-213 (337)
398 TIGR00078 nadC nicotinate-nucl 52.5 1.1E+02 0.0023 23.9 7.6 52 40-94 167-218 (265)
399 PRK14960 DNA polymerase III su 52.4 82 0.0018 28.3 7.5 76 22-100 118-194 (702)
400 PF01497 Peripla_BP_2: Peripla 52.4 53 0.0011 24.2 5.8 42 13-63 53-94 (238)
401 PLN02979 glycolate oxidase 52.3 42 0.00091 27.6 5.4 42 38-83 212-253 (366)
402 PF01136 Peptidase_U32: Peptid 52.3 96 0.0021 23.1 10.0 75 9-94 4-81 (233)
403 PF00448 SRP54: SRP54-type pro 52.2 69 0.0015 23.6 6.3 68 11-81 74-149 (196)
404 PRK14098 glycogen synthase; Pr 52.2 1.4E+02 0.0031 25.3 8.9 69 23-97 382-450 (489)
405 cd03316 MR_like Mandelate race 51.9 76 0.0017 25.4 7.0 73 8-85 201-274 (357)
406 PRK07413 hypothetical protein; 51.7 76 0.0017 26.3 6.8 46 21-69 304-355 (382)
407 PRK01362 putative translaldola 51.6 79 0.0017 23.9 6.5 49 33-82 136-186 (214)
408 cd00945 Aldolase_Class_I Class 51.6 85 0.0018 22.3 9.4 78 10-98 16-109 (201)
409 cd03799 GT1_amsK_like This is 51.6 1.1E+02 0.0024 23.5 8.1 76 10-98 247-327 (355)
410 PF13528 Glyco_trans_1_3: Glyc 51.5 32 0.00069 26.7 4.6 40 10-61 84-123 (318)
411 PRK07084 fructose-bisphosphate 51.4 1.3E+02 0.0028 24.3 8.4 68 6-78 163-265 (321)
412 PF00534 Glycos_transf_1: Glyc 51.2 79 0.0017 21.8 9.9 76 10-99 84-159 (172)
413 PRK14010 potassium-transportin 51.1 41 0.00089 30.0 5.6 57 33-94 442-498 (673)
414 PRK08072 nicotinate-nucleotide 51.1 1.1E+02 0.0023 24.2 7.3 69 23-94 158-228 (277)
415 TIGR00678 holB DNA polymerase 51.0 58 0.0012 23.4 5.6 70 22-95 96-167 (188)
416 PLN02826 dihydroorotate dehydr 51.0 43 0.00092 27.9 5.4 60 38-98 328-394 (409)
417 PF13607 Succ_CoA_lig: Succiny 50.9 48 0.001 23.1 4.9 51 8-62 41-91 (138)
418 cd02803 OYE_like_FMN_family Ol 50.8 1.2E+02 0.0025 24.0 7.8 61 13-78 234-308 (327)
419 PRK11596 cyclic-di-GMP phospho 50.7 78 0.0017 24.0 6.5 85 6-93 160-253 (255)
420 COG0421 SpeE Spermidine syntha 50.6 46 0.001 26.3 5.3 37 11-47 138-179 (282)
421 cd03804 GT1_wbaZ_like This fam 50.4 1.2E+02 0.0026 23.7 8.6 77 8-99 251-327 (351)
422 COG0191 Fba Fructose/tagatose 50.4 1.3E+02 0.0028 23.9 10.3 89 5-99 154-252 (286)
423 PRK08691 DNA polymerase III su 50.4 35 0.00075 30.6 4.9 75 22-100 119-195 (709)
424 PLN02493 probable peroxisomal 50.3 47 0.001 27.3 5.4 42 38-83 213-254 (367)
425 PRK01122 potassium-transportin 49.8 55 0.0012 29.2 6.2 56 34-94 447-502 (679)
426 PRK14963 DNA polymerase III su 49.7 69 0.0015 27.5 6.6 74 22-100 116-192 (504)
427 PRK06543 nicotinate-nucleotide 49.7 1.2E+02 0.0027 23.9 7.5 54 38-95 180-234 (281)
428 cd01148 TroA_a Metal binding p 49.7 35 0.00076 26.2 4.6 79 13-99 72-159 (284)
429 cd04741 DHOD_1A_like Dihydroor 49.7 48 0.001 26.1 5.4 40 39-79 231-270 (294)
430 cd01139 TroA_f Periplasmic bin 49.7 56 0.0012 25.9 5.8 79 13-98 84-164 (342)
431 COG0036 Rpe Pentose-5-phosphat 49.5 67 0.0015 24.5 5.8 60 22-81 131-197 (220)
432 cd01147 HemV-2 Metal binding p 49.4 76 0.0016 23.8 6.3 77 13-98 67-143 (262)
433 cd00293 USP_Like Usp: Universa 49.3 60 0.0013 20.7 5.1 22 8-31 81-102 (130)
434 PRK05749 3-deoxy-D-manno-octul 49.3 1.4E+02 0.0031 24.3 8.4 68 23-97 320-387 (425)
435 PRK09140 2-dehydro-3-deoxy-6-p 49.2 1.1E+02 0.0024 22.8 10.3 84 5-97 110-201 (206)
436 PRK15005 universal stress prot 49.2 67 0.0015 21.6 5.5 41 12-58 99-143 (144)
437 PF05768 DUF836: Glutaredoxin- 49.1 62 0.0013 20.0 5.9 55 21-93 27-81 (81)
438 cd08555 PI-PLCc_GDPD_SF Cataly 49.0 49 0.0011 23.8 5.0 30 51-80 148-177 (179)
439 PRK03669 mannosyl-3-phosphogly 48.9 74 0.0016 24.4 6.2 51 21-75 5-63 (271)
440 cd03801 GT1_YqgM_like This fam 48.9 1.1E+02 0.0025 23.0 9.2 75 10-98 267-341 (374)
441 PRK14965 DNA polymerase III su 48.9 66 0.0014 28.0 6.4 74 22-99 119-194 (576)
442 cd03807 GT1_WbnK_like This fam 48.7 1.2E+02 0.0025 23.0 8.5 64 23-98 269-332 (365)
443 cd03819 GT1_WavL_like This fam 48.5 1.2E+02 0.0027 23.3 10.0 66 23-97 264-329 (355)
444 PRK06645 DNA polymerase III su 48.4 1.1E+02 0.0024 26.3 7.6 75 22-100 128-204 (507)
445 PLN02591 tryptophan synthase 48.4 58 0.0013 25.2 5.5 42 38-82 178-219 (250)
446 KOG2335 tRNA-dihydrouridine sy 48.3 1.5E+02 0.0033 24.3 8.3 77 3-81 148-233 (358)
447 TIGR00007 phosphoribosylformim 48.3 1.1E+02 0.0024 22.7 9.5 70 7-81 28-101 (230)
448 cd03418 GRX_GRXb_1_3_like Glut 48.2 57 0.0012 19.3 4.6 49 6-60 10-59 (75)
449 COG0214 SNZ1 Pyridoxine biosyn 48.2 1.3E+02 0.0028 23.4 7.3 61 37-100 194-261 (296)
450 TIGR01457 HAD-SF-IIA-hyp2 HAD- 48.1 75 0.0016 24.2 6.1 37 36-76 21-60 (249)
451 cd03813 GT1_like_3 This family 48.1 1.2E+02 0.0027 25.3 7.9 66 23-98 371-442 (475)
452 PRK14089 ipid-A-disaccharide s 48.0 47 0.001 27.0 5.1 38 21-62 75-112 (347)
453 PTZ00314 inosine-5'-monophosph 48.0 1E+02 0.0023 26.3 7.4 31 51-81 343-373 (495)
454 PRK13957 indole-3-glycerol-pho 47.9 1.3E+02 0.0028 23.3 10.4 83 9-96 63-148 (247)
455 cd06338 PBP1_ABC_ligand_bindin 47.6 1.3E+02 0.0029 23.4 7.9 48 7-60 183-230 (345)
456 PRK02506 dihydroorotate dehydr 47.6 51 0.0011 26.2 5.2 50 51-100 240-296 (310)
457 PRK05581 ribulose-phosphate 3- 47.5 1.1E+02 0.0024 22.4 9.9 81 10-96 19-106 (220)
458 PRK13288 pyrophosphatase PpaX; 47.4 83 0.0018 22.9 6.1 39 37-79 87-125 (214)
459 PRK08005 epimerase; Validated 47.1 70 0.0015 24.1 5.6 59 22-81 128-191 (210)
460 cd04737 LOX_like_FMN L-Lactate 46.9 1.6E+02 0.0034 24.1 8.6 73 7-83 230-308 (351)
461 cd03798 GT1_wlbH_like This fam 46.8 1.3E+02 0.0027 22.9 8.6 67 23-99 279-345 (377)
462 PRK07315 fructose-bisphosphate 46.8 1.5E+02 0.0031 23.6 7.7 52 52-103 77-130 (293)
463 PRK14959 DNA polymerase III su 46.8 75 0.0016 28.1 6.4 74 22-99 119-194 (624)
464 TIGR01949 AroFGH_arch predicte 46.8 1.3E+02 0.0028 23.0 9.4 71 21-98 168-249 (258)
465 cd04736 MDH_FMN Mandelate dehy 46.7 59 0.0013 26.7 5.5 39 38-80 225-263 (361)
466 PRK12323 DNA polymerase III su 46.7 62 0.0013 29.0 5.9 75 21-99 123-199 (700)
467 PRK14958 DNA polymerase III su 46.4 78 0.0017 27.2 6.4 76 21-100 118-195 (509)
468 PRK01130 N-acetylmannosamine-6 46.3 1.2E+02 0.0026 22.5 8.7 60 13-79 81-144 (221)
469 PF06925 MGDG_synth: Monogalac 45.9 64 0.0014 22.9 5.1 73 11-93 80-153 (169)
470 cd08605 GDPD_GDE5_like_1_plant 45.7 59 0.0013 25.2 5.3 30 51-80 249-279 (282)
471 PF00549 Ligase_CoA: CoA-ligas 45.7 95 0.0021 22.1 5.9 56 8-64 60-121 (153)
472 PRK04169 geranylgeranylglycery 45.6 1.1E+02 0.0024 23.4 6.5 70 22-93 154-225 (232)
473 PRK14962 DNA polymerase III su 45.6 1.1E+02 0.0025 25.9 7.2 74 22-99 117-192 (472)
474 cd04729 NanE N-acetylmannosami 45.4 1.2E+02 0.0027 22.4 8.2 62 13-81 85-150 (219)
475 cd03795 GT1_like_4 This family 45.4 1.4E+02 0.003 23.0 10.1 68 23-98 264-332 (357)
476 PF00702 Hydrolase: haloacid d 45.1 39 0.00085 24.3 4.0 39 35-77 130-168 (215)
477 cd00429 RPE Ribulose-5-phospha 45.0 1.2E+02 0.0025 22.0 10.0 80 10-95 15-101 (211)
478 cd00288 Pyruvate_Kinase Pyruva 44.8 2E+02 0.0043 24.6 8.9 71 21-99 374-450 (480)
479 PRK05437 isopentenyl pyrophosp 44.7 1.7E+02 0.0037 23.8 8.8 42 39-82 250-292 (352)
480 PF02662 FlpD: Methyl-viologen 44.5 27 0.00059 23.9 2.8 26 56-81 34-59 (124)
481 cd01427 HAD_like Haloacid deha 44.5 68 0.0015 20.6 4.9 36 36-75 28-63 (139)
482 cd03808 GT1_cap1E_like This fa 44.5 1.4E+02 0.0029 22.6 9.3 66 23-98 264-329 (359)
483 PRK03512 thiamine-phosphate py 44.4 1.3E+02 0.0029 22.4 10.8 84 5-94 108-204 (211)
484 PF01180 DHO_dh: Dihydroorotat 44.4 1.2E+02 0.0025 23.8 6.8 41 38-79 231-271 (295)
485 cd00405 PRAI Phosphoribosylant 44.2 1.1E+02 0.0024 22.4 6.3 52 21-78 119-178 (203)
486 PRK12402 replication factor C 44.1 1.5E+02 0.0032 23.2 7.4 73 23-100 126-201 (337)
487 TIGR02181 GRX_bact Glutaredoxi 44.0 49 0.0011 19.9 3.8 51 5-61 8-58 (79)
488 TIGR00167 cbbA ketose-bisphosp 43.9 1.6E+02 0.0035 23.3 9.8 86 6-96 157-251 (288)
489 cd02991 UAS_ETEA UAS family, E 43.8 98 0.0021 20.7 7.0 63 25-98 53-115 (116)
490 PRK14048 ferrichrome/ferrioxam 43.7 68 0.0015 25.9 5.5 79 13-98 114-194 (374)
491 PRK06305 DNA polymerase III su 43.7 92 0.002 26.2 6.4 73 22-99 121-196 (451)
492 TIGR03128 RuMP_HxlA 3-hexulose 43.7 1.3E+02 0.0027 22.0 10.5 70 21-93 125-203 (206)
493 PRK14951 DNA polymerase III su 43.7 2.3E+02 0.0049 25.1 8.9 75 22-99 124-199 (618)
494 PRK05567 inosine 5'-monophosph 43.6 2E+02 0.0044 24.4 8.9 71 6-80 277-359 (486)
495 cd08556 GDPD Glycerophosphodie 43.6 1.1E+02 0.0025 21.5 6.2 38 38-80 150-187 (189)
496 cd07020 Clp_protease_NfeD_1 No 43.5 1.3E+02 0.0027 21.9 8.0 44 10-59 19-65 (187)
497 PRK03379 vitamin B12-transport 43.5 1.1E+02 0.0023 23.4 6.3 74 13-98 65-139 (260)
498 PRK10116 universal stress prot 43.4 95 0.0021 20.8 5.6 45 10-59 92-138 (142)
499 cd03027 GRX_DEP Glutaredoxin ( 43.3 71 0.0015 19.0 4.4 51 5-61 10-60 (73)
500 PF12916 DUF3834: Protein of u 43.2 46 0.001 24.9 4.0 71 2-78 96-167 (201)
No 1
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.88 E-value=4.2e-22 Score=151.36 Aligned_cols=97 Identities=25% Similarity=0.388 Sum_probs=91.7
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|+|..+.++.+|++.+.. . ||+||+|++||+++|+++|++||+. ....+|||++|+..+......++++||||||.
T Consensus 25 ~~v~~~~~~~~a~~~~~~--~-~dlviLD~~lP~~dG~~~~~~iR~~-~~~~~PIi~Lta~~~~~d~v~gl~~GADDYl~ 100 (229)
T COG0745 25 YEVDVAADGEEALEAARE--Q-PDLVLLDLMLPDLDGLELCRRLRAK-KGSGPPIIVLTARDDEEDRVLGLEAGADDYLT 100 (229)
T ss_pred CEEEEECCHHHHHHHHhc--C-CCEEEEECCCCCCCHHHHHHHHHhh-cCCCCcEEEEECCCcHHHHHHHHhCcCCeeee
Confidence 789999999999999998 8 9999999999999999999999965 44789999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhccC
Q 044790 81 KPIRKNELQNLWQHVWRKCHS 101 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l~~~~~ 101 (162)
|||++.+|.++|+.++++...
T Consensus 101 KPf~~~EL~ARi~a~lRR~~~ 121 (229)
T COG0745 101 KPFSPRELLARLRALLRRNAG 121 (229)
T ss_pred CCCCHHHHHHHHHHHHCcCcC
Confidence 999999999999999998764
No 2
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=99.81 E-value=1.8e-19 Score=147.49 Aligned_cols=94 Identities=27% Similarity=0.491 Sum_probs=89.4
Q ss_pred EEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCC
Q 044790 3 VIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKP 82 (162)
Q Consensus 3 v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP 82 (162)
|..|.||.+|++.+++ .+|||||+||.||+|+|+++++.+++.. |.+.+|++|+..+.+++.+|++.|+.|||.||
T Consensus 31 VgtA~NG~eAleli~e--~~pDiviTDI~MP~mdGLdLI~~ike~~--p~~~~IILSGy~eFeYak~Am~lGV~dYLLKP 106 (475)
T COG4753 31 VGTAANGKEALELIQE--TQPDIVITDINMPGMDGLDLIKAIKEQS--PDTEFIILSGYDEFEYAKKAMKLGVKDYLLKP 106 (475)
T ss_pred EEecccHHHHHHHHHh--cCCCEEEEecCCCCCcHHHHHHHHHHhC--CCceEEEEeccchhHHHHHHHhcCchhheeCc
Confidence 5589999999999999 9999999999999999999999999976 99999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcc
Q 044790 83 IRKNELQNLWQHVWRKCH 100 (162)
Q Consensus 83 ~~~~~L~~~i~~~l~~~~ 100 (162)
++.++|...|.++...-.
T Consensus 107 ~~k~eL~~~L~ki~~kl~ 124 (475)
T COG4753 107 VDKAELEEALKKIIGKLE 124 (475)
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 999999999999887643
No 3
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.78 E-value=3.8e-18 Score=139.84 Aligned_cols=97 Identities=28% Similarity=0.494 Sum_probs=92.5
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|.|..+.++.+|++.+.. ..||+||+|+.||+++|+++++.|++.. +.+|||++|++.+.+.+..|++.||.|||.
T Consensus 29 ~~v~~a~~~~~al~~i~~--~~~~lvl~Di~mp~~~Gl~ll~~i~~~~--~~~pVI~~Tg~g~i~~AV~A~k~GA~Dfl~ 104 (464)
T COG2204 29 YEVVTAESAEEALEALSE--SPFDLVLLDIRMPGMDGLELLKEIKSRD--PDLPVIVMTGHGDIDTAVEALRLGAFDFLE 104 (464)
T ss_pred CeEEEeCCHHHHHHHHhc--CCCCEEEEecCCCCCchHHHHHHHHhhC--CCCCEEEEeCCCCHHHHHHHHhcCcceeee
Confidence 789999999999999999 6899999999999999999999999977 899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhccC
Q 044790 81 KPIRKNELQNLWQHVWRKCHS 101 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l~~~~~ 101 (162)
|||+.+.|...|++.+.....
T Consensus 105 KP~~~~~L~~~v~ral~~~~~ 125 (464)
T COG2204 105 KPFDLDRLLAIVERALELREL 125 (464)
T ss_pred CCCCHHHHHHHHHHHHHHhhh
Confidence 999999999999999987544
No 4
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=99.77 E-value=1.1e-17 Score=112.45 Aligned_cols=88 Identities=27% Similarity=0.456 Sum_probs=84.3
Q ss_pred EEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeC
Q 044790 2 AVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVK 81 (162)
Q Consensus 2 ~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~K 81 (162)
+|..+.++.++++.+.+ ..||+||+|+.||+++|+++++.||... +.+|+|++|...+.....++++.|+++||.|
T Consensus 25 ~v~~~~~~~~~~~~~~~--~~~d~iiid~~~~~~~~~~~~~~i~~~~--~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~k 100 (112)
T PF00072_consen 25 EVTTASSGEEALELLKK--HPPDLIIIDLELPDGDGLELLEQIRQIN--PSIPIIVVTDEDDSDEVQEALRAGADDYLSK 100 (112)
T ss_dssp EEEEESSHHHHHHHHHH--STESEEEEESSSSSSBHHHHHHHHHHHT--TTSEEEEEESSTSHHHHHHHHHTTESEEEES
T ss_pred EEEEECCHHHHHHHhcc--cCceEEEEEeeecccccccccccccccc--ccccEEEecCCCCHHHHHHHHHCCCCEEEEC
Confidence 68899999999999999 8999999999999999999999999877 8999999999999999999999999999999
Q ss_pred CCCHHHHHHHHH
Q 044790 82 PIRKNELQNLWQ 93 (162)
Q Consensus 82 P~~~~~L~~~i~ 93 (162)
|++.++|..+|+
T Consensus 101 p~~~~~l~~~i~ 112 (112)
T PF00072_consen 101 PFSPEELRAAIN 112 (112)
T ss_dssp SSSHHHHHHHHH
T ss_pred CCCHHHHHHhhC
Confidence 999999999885
No 5
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=99.75 E-value=6.9e-18 Score=132.82 Aligned_cols=97 Identities=32% Similarity=0.444 Sum_probs=91.2
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHc-cCCCCCCcEEEEecCCCHHHHHHHHHcCCceEE
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMN-HKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFL 79 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~-~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l 79 (162)
|+|..|.+|++++++... .++|+||+|++||+|+|+++|.+|+. .+.+..+|||++|+..+.+...+++..|+++||
T Consensus 39 y~v~~ae~g~~a~kl~~~--~~~dlvllD~~mp~mdg~ev~~~lk~~~p~t~~ip~i~lT~~~d~~~~~~~~~~g~~dyl 116 (360)
T COG3437 39 YRVIEAENGEEALKLLQE--EPPDLVLLDVRMPEMDGAEVLNKLKAMSPSTRRIPVILLTAYADSEDRQRALEAGADDYL 116 (360)
T ss_pred cceeeecCchHHHHHhcc--cCCceEEeeccCCCccHHHHHHHHHhcCCcccccceEEEeecCChHHHHHHHHhhHHHHh
Confidence 789999999999999998 88999999999999999999999998 777788999999999999999999999999999
Q ss_pred eCCCCHHHHHHHHHHHHHhc
Q 044790 80 VKPIRKNELQNLWQHVWRKC 99 (162)
Q Consensus 80 ~KP~~~~~L~~~i~~~l~~~ 99 (162)
.||+++.+|..++...+..+
T Consensus 117 ~KP~~~~~l~~rv~~~~q~k 136 (360)
T COG3437 117 SKPISPKELVARVSSHLQLK 136 (360)
T ss_pred cCCCCHHHHHHHHHHHHHHH
Confidence 99999999999998776554
No 6
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=99.74 E-value=1.5e-17 Score=120.57 Aligned_cols=95 Identities=22% Similarity=0.389 Sum_probs=89.1
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|++.++.++.+.|..... ..|-++|+|+.||+++|.++.++|.+.. ...|||++|++.+.....++++.||-|||.
T Consensus 29 ~~v~~~~s~~~fL~~~~~--~~pGclllDvrMPg~sGlelq~~L~~~~--~~~PVIfiTGhgDIpmaV~AmK~GAvDFLe 104 (202)
T COG4566 29 FQVKCFASAEEFLAAAPL--DRPGCLLLDVRMPGMSGLELQDRLAERG--IRLPVIFLTGHGDIPMAVQAMKAGAVDFLE 104 (202)
T ss_pred ceeeeecCHHHHHhhccC--CCCCeEEEecCCCCCchHHHHHHHHhcC--CCCCEEEEeCCCChHHHHHHHHcchhhHHh
Confidence 678899999999998655 7899999999999999999999999877 899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhc
Q 044790 81 KPIRKNELQNLWQHVWRKC 99 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l~~~ 99 (162)
||++.+.|+.+|++.++..
T Consensus 105 KP~~~q~Lldav~~Al~~~ 123 (202)
T COG4566 105 KPFSEQDLLDAVERALARD 123 (202)
T ss_pred CCCchHHHHHHHHHHHHHH
Confidence 9999999999999988874
No 7
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.73 E-value=6e-17 Score=121.80 Aligned_cols=97 Identities=25% Similarity=0.361 Sum_probs=89.9
Q ss_pred EEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCC
Q 044790 3 VIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKP 82 (162)
Q Consensus 3 v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP 82 (162)
|..+.++.++++.+.. .+||+||+|+.||+++|++++++|++.. +.++|+++|.+.+..++.++++.|+++|+.|.
T Consensus 29 v~~a~~~~~~l~~~~~--~~pdvvl~Dl~mP~~~G~e~~~~l~~~~--p~~~vvvlt~~~~~~~v~~al~~Ga~Gyl~K~ 104 (211)
T COG2197 29 VGEASNGEEALDLARE--LKPDVVLLDLSMPGMDGLEALKQLRARG--PDIKVVVLTAHDDPAYVIRALRAGADGYLLKD 104 (211)
T ss_pred EEEeCCHHHHHHHhhh--cCCCEEEEcCCCCCCChHHHHHHHHHHC--CCCcEEEEeccCCHHHHHHHHHcCCCEEEeCC
Confidence 4578889999999888 8999999999999999999999999765 89999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhccCCC
Q 044790 83 IRKNELQNLWQHVWRKCHSSS 103 (162)
Q Consensus 83 ~~~~~L~~~i~~~l~~~~~~~ 103 (162)
.+.++|..+|+.++.+..+..
T Consensus 105 ~~~~~l~~ai~~v~~G~~~~~ 125 (211)
T COG2197 105 ASPEELVEAIRAVAAGGTYLP 125 (211)
T ss_pred CCHHHHHHHHHHHHCCCeEeC
Confidence 999999999999998875444
No 8
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=99.73 E-value=2.9e-17 Score=121.18 Aligned_cols=98 Identities=27% Similarity=0.367 Sum_probs=91.1
Q ss_pred EEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCC
Q 044790 3 VIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKP 82 (162)
Q Consensus 3 v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP 82 (162)
|..|.++.+|...+.. ..|||||+|+-||+.+|++++..||+.. ..+-||++|+-.+.+.+.+++..|+.|||.||
T Consensus 29 vg~A~~~~ea~~~i~~--~~pDLILLDiYmPd~~Gi~lL~~ir~~~--~~~DVI~iTAA~d~~tI~~alr~Gv~DYLiKP 104 (224)
T COG4565 29 VGTAGTLEEAKMIIEE--FKPDLILLDIYMPDGNGIELLPELRSQH--YPVDVIVITAASDMETIKEALRYGVVDYLIKP 104 (224)
T ss_pred EEeeccHHHHHHHHHh--hCCCEEEEeeccCCCccHHHHHHHHhcC--CCCCEEEEeccchHHHHHHHHhcCchhheecc
Confidence 5689999999999998 8899999999999999999999999877 78999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhccCCCC
Q 044790 83 IRKNELQNLWQHVWRKCHSSSG 104 (162)
Q Consensus 83 ~~~~~L~~~i~~~l~~~~~~~~ 104 (162)
|..+.|..+|.+..+++.....
T Consensus 105 f~~eRl~~aL~~y~~~r~~l~~ 126 (224)
T COG4565 105 FTFERLQQALTRYRQKRHALES 126 (224)
T ss_pred eeHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999887655443
No 9
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=99.70 E-value=2.1e-16 Score=128.72 Aligned_cols=99 Identities=26% Similarity=0.456 Sum_probs=94.4
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|+|..+.++.+|+..+.+ .+||+||+|+.||++||+++|.++|+......+|||+++...+.....+||+.|++|||.
T Consensus 157 ~~v~~a~~~~~Al~~~~e--~~~dlil~d~~mp~~dg~el~~~lr~~~~t~~ipii~~~~~~d~~~~~~Af~~G~~Dyi~ 234 (435)
T COG3706 157 FRVVEATDGEEALLQLAE--LPPDLVLLDANMPDMDGLELCTRLRQLERTRDIPIILLSSKDDDELVVRAFELGVNDYIT 234 (435)
T ss_pred ceeeeecCHHHHHHHHhc--CCCcEEEEecCCCccCHHHHHHHHhcccccccccEEEEecccchHHHHHHHHcCCcceEe
Confidence 678999999999999999 899999999999999999999999998888899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhccC
Q 044790 81 KPIRKNELQNLWQHVWRKCHS 101 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l~~~~~ 101 (162)
||+...+|..++++.+++.+.
T Consensus 235 kPi~~~~l~~Rl~~~l~~~~~ 255 (435)
T COG3706 235 KPIEEGELRARLRRQLRRKRY 255 (435)
T ss_pred cCCCHHHHHHHHHHHHHhhhH
Confidence 999999999999999988764
No 10
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=99.68 E-value=1e-15 Score=115.75 Aligned_cols=96 Identities=22% Similarity=0.305 Sum_probs=88.0
Q ss_pred EEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCC
Q 044790 3 VIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKP 82 (162)
Q Consensus 3 v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP 82 (162)
|..+.++.++++.+.. ..||+||+|+.||+++|+++++.|+... +.++||++|+..+.....+++..|+++||.||
T Consensus 33 v~~a~~~~~al~~~~~--~~pdlvllD~~mp~~~gle~~~~l~~~~--~~~~iivls~~~~~~~~~~al~~Ga~~yl~Kp 108 (225)
T PRK10046 33 ILLAGNLAQARMMIER--FKPGLILLDNYLPDGRGINLLHELVQAH--YPGDVVFTTAASDMETVSEAVRCGVFDYLIKP 108 (225)
T ss_pred EEEECCHHHHHHHHHh--cCCCEEEEeCCCCCCcHHHHHHHHHhcC--CCCCEEEEEcCCCHHHHHHHHHcCccEEEECC
Confidence 5689999999999998 8899999999999999999999999754 67899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhccCC
Q 044790 83 IRKNELQNLWQHVWRKCHSS 102 (162)
Q Consensus 83 ~~~~~L~~~i~~~l~~~~~~ 102 (162)
++.++|...|+++..+....
T Consensus 109 ~~~~~L~~~i~~~~~~~~~~ 128 (225)
T PRK10046 109 IAYERLGQTLTRFRQRKHML 128 (225)
T ss_pred cCHHHHHHHHHHHHHHHHHH
Confidence 99999999999987765543
No 11
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=99.68 E-value=9.8e-16 Score=114.89 Aligned_cols=97 Identities=9% Similarity=0.027 Sum_probs=85.3
Q ss_pred EEEEEcCHHHHHHHHHhhCCCccEEE---EcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHH-HcCCce
Q 044790 2 AVIAVENGLQAWKILEDLMDQIDLVL---TEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCL-SKGAVY 77 (162)
Q Consensus 2 ~v~~a~~~~eal~~l~~~~~~~Dlvl---lD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~-~~Ga~~ 77 (162)
.|..+.++.++++.+.. ..||++| +|+.||+++|++++++|++.. +.+|||++|...+......++ +.|+.+
T Consensus 19 ~v~~~~~~~~~l~~~~~--~~pd~vl~dl~d~~mp~~~Gl~~~~~l~~~~--p~~~iIvlt~~~~~~~~~~~~~~~Ga~g 94 (207)
T PRK11475 19 KLHTFSSQSSFQDAMSR--ISFSAVIFSLSAMRSERREGLSCLTELAIKF--PRMRRLVIADDDIEARLIGSLSPSPLDG 94 (207)
T ss_pred EEEEeCCHHHHHHHhcc--CCCCEEEeeccccCCCCCCHHHHHHHHHHHC--CCCCEEEEeCCCCHHHHHHHHHHcCCeE
Confidence 45789999999999887 7899998 688899999999999998865 899999999987777666666 799999
Q ss_pred EEeCCCCHHHHHHHHHHHHHhccCC
Q 044790 78 FLVKPIRKNELQNLWQHVWRKCHSS 102 (162)
Q Consensus 78 ~l~KP~~~~~L~~~i~~~l~~~~~~ 102 (162)
||.||.+.++|..+|+.++++..+.
T Consensus 95 yl~K~~~~~eL~~aI~~v~~G~~~~ 119 (207)
T PRK11475 95 VLSKASTLEILQQELFLSLNGVRQA 119 (207)
T ss_pred EEecCCCHHHHHHHHHHHHCCCccc
Confidence 9999999999999999999876543
No 12
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=99.65 E-value=7e-16 Score=134.94 Aligned_cols=94 Identities=21% Similarity=0.382 Sum_probs=85.8
Q ss_pred EEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeC
Q 044790 2 AVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVK 81 (162)
Q Consensus 2 ~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~K 81 (162)
++.++.+|.||++.+.. .+.||+||||++||.|||+++.++||+.-. .++|||.+|+........+|++.|+|+||.|
T Consensus 692 ~~~~~~sg~e~l~~~~~-~~~y~~ifmD~qMP~mDG~e~~~~irk~~~-~~~pIvAlTa~~~~~~~~~c~~~Gmd~yl~K 769 (786)
T KOG0519|consen 692 EVTEVNSGQEALDKLKP-PHSYDVIFMDLQMPEMDGYEATREIRKKER-WHLPIVALTADADPSTEEECLEVGMDGYLSK 769 (786)
T ss_pred eeEeecCcHHHHHhcCC-CCcccEEEEEcCCcccchHHHHHHHHHhhc-CCCCEEEEecCCcHHHHHHHHHhCCceEEcc
Confidence 56788899999999983 278999999999999999999999998643 7999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHH
Q 044790 82 PIRKNELQNLWQHVWR 97 (162)
Q Consensus 82 P~~~~~L~~~i~~~l~ 97 (162)
|+..+.|...|.+++.
T Consensus 770 P~~~~~l~~~l~~~~~ 785 (786)
T KOG0519|consen 770 PFTLEKLVKILREFLL 785 (786)
T ss_pred cccHHHHHHHHHHHhc
Confidence 9999999999988763
No 13
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=99.65 E-value=6.7e-15 Score=101.17 Aligned_cols=94 Identities=31% Similarity=0.485 Sum_probs=81.2
Q ss_pred CEEEEEcCHH-HHHHHHHhhCC-CccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceE
Q 044790 1 MAVIAVENGL-QAWKILEDLMD-QIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYF 78 (162)
Q Consensus 1 ~~v~~a~~~~-eal~~l~~~~~-~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~ 78 (162)
|.|..+.++. +|++.++. . .||+|++|+.||+++|+++++++|... +.+|+|++|+.........++..|+++|
T Consensus 30 ~~v~~a~~g~~~al~~~~~--~~~~dlii~D~~mp~~~G~~~~~~l~~~~--~~~pvv~~t~~~~~~~~~~~~~~g~~~~ 105 (130)
T COG0784 30 YEVVEAADGEEEALELLRE--LPQPDLILLDINMPGMDGIELLRRLRARG--PNIPVILLTAYADEADRERALAAGADDY 105 (130)
T ss_pred CeEEEeCChHHHHHHHHHh--CCCCCEEEEeCCCCCCCHHHHHHHHHhCC--CCCCEEEEEcCcCHHHHHHHHHcCCCeE
Confidence 5688999995 99999998 7 499999999999999999999999863 6788899999888887778899999999
Q ss_pred EeCCCCHHH-HHHHHHHHHHh
Q 044790 79 LVKPIRKNE-LQNLWQHVWRK 98 (162)
Q Consensus 79 l~KP~~~~~-L~~~i~~~l~~ 98 (162)
+.||+...+ |...+.+.+..
T Consensus 106 l~kP~~~~~~l~~~i~~~~~~ 126 (130)
T COG0784 106 LTKPIFLEEELLAALRRLLAR 126 (130)
T ss_pred EcCCCCcHHHHHHHHHHHHHh
Confidence 999977766 78888766544
No 14
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=99.65 E-value=5.4e-15 Score=110.48 Aligned_cols=95 Identities=22% Similarity=0.361 Sum_probs=88.4
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|.|..+.++.++++.+.. ..||+||+|+.||+++|+++++.++... +.+|+|++++..+......+++.|+++|+.
T Consensus 25 ~~v~~~~~~~~~l~~~~~--~~~dlvild~~l~~~~g~~l~~~lr~~~--~~~pii~ls~~~~~~~~~~~l~~Ga~d~l~ 100 (223)
T PRK10816 25 HQVDAAEDAKEADYYLNE--HLPDIAIVDLGLPDEDGLSLIRRWRSND--VSLPILVLTARESWQDKVEVLSAGADDYVT 100 (223)
T ss_pred CEEEEECCHHHHHHHHhh--CCCCEEEEECCCCCCCHHHHHHHHHhcC--CCCCEEEEEcCCCHHHHHHHHHcCCCeeEe
Confidence 568889999999999988 7899999999999999999999999865 789999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhc
Q 044790 81 KPIRKNELQNLWQHVWRKC 99 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l~~~ 99 (162)
||++..+|..+|+.++++.
T Consensus 101 kp~~~~eL~~~i~~~~~~~ 119 (223)
T PRK10816 101 KPFHIEEVMARMQALMRRN 119 (223)
T ss_pred CCCCHHHHHHHHHHHHhcc
Confidence 9999999999999988764
No 15
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=99.63 E-value=9.1e-15 Score=109.53 Aligned_cols=95 Identities=23% Similarity=0.461 Sum_probs=87.7
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|.|..+.++.++++.+.. ..||+||+|+.||+++|+++++.++... +.+|||++++.........+++.|+++||.
T Consensus 25 ~~v~~~~~~~~~~~~~~~--~~~dlvild~~~~~~~g~~~~~~lr~~~--~~~pii~ls~~~~~~~~~~~~~~Ga~~~l~ 100 (227)
T PRK09836 25 FVVDLADNGLNGYHLAMT--GDYDLIILDIMLPDVNGWDIVRMLRSAN--KGMPILLLTALGTIEHRVKGLELGADDYLV 100 (227)
T ss_pred CEEEEECCHHHHHHHHhh--CCCCEEEEECCCCCCCHHHHHHHHHhcC--CCCCEEEEEcCCCHHHHHHHHhCCCCEEEe
Confidence 467889999999998887 7899999999999999999999999865 789999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhc
Q 044790 81 KPIRKNELQNLWQHVWRKC 99 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l~~~ 99 (162)
||++.++|..+|+.++++.
T Consensus 101 kp~~~~~l~~~i~~~~~~~ 119 (227)
T PRK09836 101 KPFAFAELLARVRTLLRRG 119 (227)
T ss_pred CCCCHHHHHHHHHHHHhcc
Confidence 9999999999999988753
No 16
>PRK11173 two-component response regulator; Provisional
Probab=99.63 E-value=1.1e-14 Score=110.00 Aligned_cols=95 Identities=21% Similarity=0.389 Sum_probs=87.5
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|+|..+.++.++++.+.. ..||+||+|+.||+++|+++++.|+.. +.+|+|++++.........++..|+++|+.
T Consensus 28 ~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~g~~~~~~lr~~---~~~pii~lt~~~~~~~~~~~~~~ga~d~l~ 102 (237)
T PRK11173 28 YDVFEATDGAEMHQILSE--NDINLVIMDINLPGKNGLLLARELREQ---ANVALMFLTGRDNEVDKILGLEIGADDYIT 102 (237)
T ss_pred CEEEEECCHHHHHHHHhh--CCCCEEEEcCCCCCCCHHHHHHHHhcC---CCCCEEEEECCCCHHHHHHHHHCCCCEEEE
Confidence 568899999999999988 789999999999999999999999874 478999999999988899999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcc
Q 044790 81 KPIRKNELQNLWQHVWRKCH 100 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l~~~~ 100 (162)
||++.++|..+|+.++++..
T Consensus 103 kP~~~~eL~~~i~~~l~r~~ 122 (237)
T PRK11173 103 KPFNPRELTIRARNLLSRTM 122 (237)
T ss_pred CCCCHHHHHHHHHHHHhccc
Confidence 99999999999999888753
No 17
>PLN03029 type-a response regulator protein; Provisional
Probab=99.62 E-value=1.2e-14 Score=110.12 Aligned_cols=98 Identities=34% Similarity=0.590 Sum_probs=84.4
Q ss_pred CEEEEEcCHHHHHHHHHhhC------------------CCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCC
Q 044790 1 MAVIAVENGLQAWKILEDLM------------------DQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHD 62 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~------------------~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~ 62 (162)
|+|..+.++.++++.+.... ..+|+||+|+.||+++|+++++.|+.......+|||++++..
T Consensus 33 ~~v~~a~sg~~al~~l~~~~~d~~~p~~~~~~~~~~~~~~~dlVllD~~mp~~~G~e~l~~ir~~~~~~~ipvIils~~~ 112 (222)
T PLN03029 33 YQVTTVDSGSKALKFLGLHEDDRSNPDTPSVSPNSHQEVEVNLIITDYCMPGMTGYDLLKKIKESSSLRNIPVVIMSSEN 112 (222)
T ss_pred ceEEEECCHHHHHHHHHhccccccccccccccccccccccCCEEEEcCCCCCCCHHHHHHHHHhccccCCCcEEEEeCCC
Confidence 57889999999999986510 136799999999999999999999986544689999999999
Q ss_pred CHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHHHh
Q 044790 63 SMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVWRK 98 (162)
Q Consensus 63 ~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 98 (162)
......+++..|+++||.||+...+|...+..++..
T Consensus 113 ~~~~~~~al~~Ga~dyl~KP~~~~~L~~l~~~~~~~ 148 (222)
T PLN03029 113 VPSRITRCLEEGAEEFFLKPVQLSDLNRLKPHMMKT 148 (222)
T ss_pred CHHHHHHHHHhCchheEECCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999997777665544
No 18
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=99.62 E-value=2.2e-14 Score=106.47 Aligned_cols=96 Identities=26% Similarity=0.392 Sum_probs=88.0
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|.+..+.++.++++.+.. ..||+||+|+.||+++|+++++.++... +.+|+|+++...+......++..|+++|+.
T Consensus 25 ~~v~~~~~~~~~~~~~~~--~~~d~illd~~~~~~~g~~~~~~l~~~~--~~~pii~ls~~~~~~~~~~~~~~ga~~~l~ 100 (222)
T PRK10643 25 YACDCASTAREAEALLES--GHYSLVVLDLGLPDEDGLHLLRRWRQKK--YTLPVLILTARDTLEDRVAGLDVGADDYLV 100 (222)
T ss_pred CEEEEeCCHHHHHHHHHh--CCCCEEEEECCCCCCCHHHHHHHHHhcC--CCCcEEEEECCCCHHHHHHHHhcCCCeEEe
Confidence 467788999999999987 7899999999999999999999998765 789999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcc
Q 044790 81 KPIRKNELQNLWQHVWRKCH 100 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l~~~~ 100 (162)
||++.++|..+|+.++++..
T Consensus 101 kp~~~~~l~~~i~~~~~~~~ 120 (222)
T PRK10643 101 KPFALEELHARIRALIRRHQ 120 (222)
T ss_pred CCCCHHHHHHHHHHHHhhhc
Confidence 99999999999999887654
No 19
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=99.62 E-value=1.8e-14 Score=108.05 Aligned_cols=97 Identities=24% Similarity=0.375 Sum_probs=88.4
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|++..+.++.++++.+.. ..||+||+|+.||+++|+++++.|+.....+.+|||+++...+......+++.|+++||.
T Consensus 27 ~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~g~~~~~~l~~~~~~~~~pvi~ls~~~~~~~~~~~~~~Ga~~~l~ 104 (229)
T PRK10161 27 FQPVEAEDYDSAVNQLNE--PWPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYIT 104 (229)
T ss_pred CEEEEECCHHHHHHHHhc--cCCCEEEEeCCCCCCCHHHHHHHHHhccccCCCCEEEEECCCCHHHHHHHHHcCCCEEEE
Confidence 467789999999999987 789999999999999999999999875434689999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhc
Q 044790 81 KPIRKNELQNLWQHVWRKC 99 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l~~~ 99 (162)
||++.++|..+|+.++++.
T Consensus 105 kp~~~~~L~~~i~~~~~~~ 123 (229)
T PRK10161 105 KPFSPKELVARIKAVMRRI 123 (229)
T ss_pred CCCCHHHHHHHHHHHHhcc
Confidence 9999999999999988763
No 20
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=99.61 E-value=1.8e-14 Score=107.62 Aligned_cols=94 Identities=27% Similarity=0.349 Sum_probs=86.3
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|++..+.++.+++..+.. ..||+||+|+.||+++|+++++.|+.. +.+|+|++++.........++..|+++||.
T Consensus 26 ~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~g~~~~~~lr~~---~~~pvi~lt~~~~~~~~~~~~~~ga~~~l~ 100 (225)
T PRK10529 26 MRVFEAETLQRGLLEAAT--RKPDLIILDLGLPDGDGIEFIRDLRQW---SAIPVIVLSARSEESDKIAALDAGADDYLS 100 (225)
T ss_pred CEEEEeCCHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHcC---CCCCEEEEECCCCHHHHHHHHHcCCCEEEe
Confidence 467788999999998887 789999999999999999999999864 578999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhc
Q 044790 81 KPIRKNELQNLWQHVWRKC 99 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l~~~ 99 (162)
||++.++|..+|+.++++.
T Consensus 101 kP~~~~~l~~~i~~~~~~~ 119 (225)
T PRK10529 101 KPFGIGELQARLRVALRRH 119 (225)
T ss_pred CCCCHHHHHHHHHHHHhhc
Confidence 9999999999999988764
No 21
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=99.61 E-value=2.4e-14 Score=106.45 Aligned_cols=98 Identities=26% Similarity=0.443 Sum_probs=88.5
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|++..+.++.+++..+.. ..||+||+|+.||+++|+++++.|+.....+.+|||++++..+......++..|+++|+.
T Consensus 27 ~~v~~~~~~~~~~~~~~~--~~~d~vi~d~~~~~~~g~~~~~~l~~~~~~~~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~ 104 (226)
T TIGR02154 27 YDVVEAGDGDEALTLINE--RGPDLILLDWMLPGTSGIELCRRLRRRPETRAIPIIMLTARGEEEDRVRGLETGADDYIT 104 (226)
T ss_pred CEEEEEcCHHHHHHHHHh--cCCCEEEEECCCCCCcHHHHHHHHHccccCCCCCEEEEecCCCHHHHHHHHhcCcceEEe
Confidence 467788999999999988 789999999999999999999999875434679999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcc
Q 044790 81 KPIRKNELQNLWQHVWRKCH 100 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l~~~~ 100 (162)
||++.++|..+|+.++++..
T Consensus 105 kp~~~~~l~~~i~~~~~~~~ 124 (226)
T TIGR02154 105 KPFSPRELLARIKAVLRRIR 124 (226)
T ss_pred CCCCHHHHHHHHHHHhcccc
Confidence 99999999999999887743
No 22
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=99.61 E-value=2.4e-14 Score=106.68 Aligned_cols=95 Identities=19% Similarity=0.336 Sum_probs=87.5
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|+|..+.++.++++.+.. ..||+||+|+.||+++|+++++.++.. +.+|+|++++..+......++..|+++|+.
T Consensus 27 ~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~g~~~~~~lr~~---~~~~ii~l~~~~~~~~~~~~l~~Ga~d~l~ 101 (221)
T PRK10766 27 YTVSEAASGAGMREIMQN--QHVDLILLDINLPGEDGLMLTRELRSR---STVGIILVTGRTDSIDRIVGLEMGADDYVT 101 (221)
T ss_pred CEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHhC---CCCCEEEEECCCcHHHHHHHHHcCCCcEEe
Confidence 578899999999999987 789999999999999999999999874 478999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcc
Q 044790 81 KPIRKNELQNLWQHVWRKCH 100 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l~~~~ 100 (162)
||++..+|..+|..++++..
T Consensus 102 kP~~~~~L~~~i~~~~~r~~ 121 (221)
T PRK10766 102 KPLELRELLVRVKNLLWRIS 121 (221)
T ss_pred CCCCHHHHHHHHHHHHhhhc
Confidence 99999999999999887743
No 23
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=99.60 E-value=2.2e-14 Score=108.32 Aligned_cols=95 Identities=22% Similarity=0.370 Sum_probs=88.1
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|++..+.++.++++.+.. ..||+||+|+.||+++|+++++.|+... +.+|||++++..+......++..|+++||.
T Consensus 30 ~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~g~~~~~~lr~~~--~~~pii~ls~~~~~~~~~~~l~~Ga~~~l~ 105 (239)
T PRK09468 30 FQVRSAANAEQMDRLLTR--ESFHLMVLDLMLPGEDGLSICRRLRSQN--NPTPIIMLTAKGEEVDRIVGLEIGADDYLP 105 (239)
T ss_pred CEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHhcC--CCCCEEEEECCCcHHHHHHHHhcCCCeEEE
Confidence 578889999999999988 7899999999999999999999999754 689999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhc
Q 044790 81 KPIRKNELQNLWQHVWRKC 99 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l~~~ 99 (162)
||++.++|..+|+.++++.
T Consensus 106 kP~~~~~L~~~i~~~~~r~ 124 (239)
T PRK09468 106 KPFNPRELLARIRAVLRRQ 124 (239)
T ss_pred CCCCHHHHHHHHHHHhccc
Confidence 9999999999999988764
No 24
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=99.60 E-value=3.1e-14 Score=105.59 Aligned_cols=95 Identities=22% Similarity=0.347 Sum_probs=87.1
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|++..+.++.++++.+.. ..||+||+|+.||+++|+++++.|+... +.+|+|+++...+......++..|+++|+.
T Consensus 25 ~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~g~~~~~~i~~~~--~~~~ii~lt~~~~~~~~~~~~~~ga~~~i~ 100 (219)
T PRK10336 25 FSVDWFTQGRQGKEALYS--APYDAVILDLTLPGMDGRDILREWREKG--QREPVLILTARDALAERVEGLRLGADDYLC 100 (219)
T ss_pred CEEEEeCCHHHHHHHHhh--CCCCEEEEECCCCCCCHHHHHHHHHhcC--CCCcEEEEECCCCHHHHHHHHhCCCCeEEE
Confidence 467788999999999887 7899999999999999999999999755 789999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhc
Q 044790 81 KPIRKNELQNLWQHVWRKC 99 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l~~~ 99 (162)
||++.++|..+|+.++++.
T Consensus 101 kp~~~~~l~~~i~~~~~~~ 119 (219)
T PRK10336 101 KPFALIEVAARLEALMRRT 119 (219)
T ss_pred CCCCHHHHHHHHHHHHhcc
Confidence 9999999999999988764
No 25
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=99.60 E-value=1.9e-14 Score=128.26 Aligned_cols=95 Identities=24% Similarity=0.404 Sum_probs=89.1
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|+|..+.++.+|++.+.. ..||+||+|+.||+|+|+++++.||+.. +.+|||++|+....+...++++.|+++||.
T Consensus 826 ~~v~~a~~g~eal~~l~~--~~~DlVl~D~~mP~mdG~el~~~ir~~~--~~~pII~lTa~~~~~~~~~~~~aG~d~~L~ 901 (924)
T PRK10841 826 YQCKTANDGVDALNVLSK--NHIDIVLTDVNMPNMDGYRLTQRLRQLG--LTLPVIGVTANALAEEKQRCLEAGMDSCLS 901 (924)
T ss_pred CEEEEECCHHHHHHHHHh--CCCCEEEEcCCCCCCCHHHHHHHHHhcC--CCCCEEEEECCCCHHHHHHHHHCCCCEEEe
Confidence 578899999999999998 8899999999999999999999999866 789999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhc
Q 044790 81 KPIRKNELQNLWQHVWRKC 99 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l~~~ 99 (162)
||++.++|...|..+..+.
T Consensus 902 KPv~~~~L~~~L~~~~~~~ 920 (924)
T PRK10841 902 KPVTLDVLKQTLTVYAERV 920 (924)
T ss_pred CCCCHHHHHHHHHHHHHHh
Confidence 9999999999999887654
No 26
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=99.60 E-value=3.9e-14 Score=105.97 Aligned_cols=96 Identities=19% Similarity=0.235 Sum_probs=87.5
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCC--CCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceE
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPC--LSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYF 78 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~--~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~ 78 (162)
|++..+.++.+++..+.. ..||+||+|+.||+ .+|+++++.++... +.+|+|++++..+......++..|+++|
T Consensus 25 ~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~~~g~~~~~~i~~~~--~~~pii~ls~~~~~~~~~~~~~~Ga~~~ 100 (227)
T TIGR03787 25 YQVTTYADRPSAMQAFRQ--RLPDLAIIDIGLGEEIDGGFMLCQDLRSLS--ATLPIIFLTARDSDFDTVSGLRLGADDY 100 (227)
T ss_pred cEEEEecCHHHHHHHHHh--CCCCEEEEECCCCCCCCCHHHHHHHHHhcC--CCCCEEEEECCCCHHHHHHHHhcCCCEE
Confidence 567788999999999988 78999999999998 58999999999765 6899999999999999999999999999
Q ss_pred EeCCCCHHHHHHHHHHHHHhcc
Q 044790 79 LVKPIRKNELQNLWQHVWRKCH 100 (162)
Q Consensus 79 l~KP~~~~~L~~~i~~~l~~~~ 100 (162)
+.||++.++|..+|+.++++..
T Consensus 101 l~kp~~~~~l~~~i~~~~~~~~ 122 (227)
T TIGR03787 101 LTKDISLPHLLARITALFRRAE 122 (227)
T ss_pred EECCCCHHHHHHHHHHHHHhhh
Confidence 9999999999999999988753
No 27
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=99.60 E-value=2.7e-14 Score=107.02 Aligned_cols=95 Identities=17% Similarity=0.205 Sum_probs=86.7
Q ss_pred EEEEcCHHHHHHHHHhhCCCccEEEEcCCCCC---CCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEE
Q 044790 3 VIAVENGLQAWKILEDLMDQIDLVLTEVLMPC---LSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFL 79 (162)
Q Consensus 3 v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~---~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l 79 (162)
+..+.++.++++.+.. ..||+||+|+.||+ .+|++++++|+... +.+|||+++...+......+++.|+++||
T Consensus 32 v~~~~~~~~~~~~~~~--~~~DlvllD~~l~~~~~~~g~~~~~~l~~~~--~~~~iIvls~~~~~~~~~~a~~~Ga~~yl 107 (216)
T PRK10840 32 VGEFEDSTALINNLPK--LDAHVLITDLSMPGDKYGDGITLIKYIKRHF--PSLSIIVLTMNNNPAILSAVLDLDIEGIV 107 (216)
T ss_pred EEEECCHHHHHHHHHh--CCCCEEEEeCcCCCCCCCCHHHHHHHHHHHC--CCCcEEEEEecCCHHHHHHHHHCCCeEEE
Confidence 5578999999999988 78999999999999 59999999998754 78999999999999999999999999999
Q ss_pred eCCCCHHHHHHHHHHHHHhccC
Q 044790 80 VKPIRKNELQNLWQHVWRKCHS 101 (162)
Q Consensus 80 ~KP~~~~~L~~~i~~~l~~~~~ 101 (162)
.||++.++|..+|+.++.+..+
T Consensus 108 ~K~~~~~~l~~ai~~v~~g~~~ 129 (216)
T PRK10840 108 LKQGAPTDLPKALAALQKGKKF 129 (216)
T ss_pred ECCCCHHHHHHHHHHHHCCCee
Confidence 9999999999999998876554
No 28
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=99.60 E-value=4.6e-14 Score=104.50 Aligned_cols=96 Identities=29% Similarity=0.474 Sum_probs=88.3
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|.+..+.++.++++.+.. ..||+||+|+.||+++|+++++.++... +.+|||+++...+......++..|+++|+.
T Consensus 23 ~~v~~~~~~~~~~~~~~~--~~~dlvl~d~~~~~~~g~~~~~~l~~~~--~~~~iivls~~~~~~~~~~~~~~Ga~~~l~ 98 (218)
T TIGR01387 23 YVVDAASNGRDGLHLALK--DDYDLIILDVMLPGMDGWQILQTLRRSG--KQTPVLFLTARDSVADKVKGLDLGADDYLV 98 (218)
T ss_pred CEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHccC--CCCcEEEEEcCCCHHHHHHHHHcCCCeEEE
Confidence 467788999999999988 7899999999999999999999999755 789999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcc
Q 044790 81 KPIRKNELQNLWQHVWRKCH 100 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l~~~~ 100 (162)
||++.++|..+|+.++++..
T Consensus 99 kp~~~~~l~~~i~~~~~~~~ 118 (218)
T TIGR01387 99 KPFSFSELLARVRTLLRRSH 118 (218)
T ss_pred CCCCHHHHHHHHHHHhcccc
Confidence 99999999999999887654
No 29
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=99.59 E-value=2.4e-14 Score=126.78 Aligned_cols=97 Identities=25% Similarity=0.328 Sum_probs=89.4
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|.|..+.++.+|++.+.. ..||+||+|+.||+++|+++++.||+....+.+|||++|+........+++..|+++||.
T Consensus 692 ~~v~~~~~~~~al~~~~~--~~~dlil~D~~mp~~~g~~~~~~lr~~~~~~~~pii~lt~~~~~~~~~~~~~~G~~~~l~ 769 (919)
T PRK11107 692 EHVVLCDSGHQAVEQAKQ--RPFDLILMDIQMPGMDGIRACELIRQLPHNQNTPIIAVTAHAMAGERERLLSAGMDDYLA 769 (919)
T ss_pred CEEEEECCHHHHHHHHHh--CCCCEEEEeCCCCCCcHHHHHHHHHhcccCCCCCEEEEeCCCCHHHHHHHHHcCCCeEee
Confidence 468899999999999998 899999999999999999999999986545789999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhc
Q 044790 81 KPIRKNELQNLWQHVWRKC 99 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l~~~ 99 (162)
||++.++|...|++++...
T Consensus 770 KP~~~~~L~~~l~~~~~~~ 788 (919)
T PRK11107 770 KPIDEAMLKQVLLRYKPGP 788 (919)
T ss_pred CCCCHHHHHHHHHHHcccc
Confidence 9999999999999886543
No 30
>PRK10693 response regulator of RpoS; Provisional
Probab=99.59 E-value=2.6e-14 Score=112.91 Aligned_cols=91 Identities=25% Similarity=0.444 Sum_probs=82.9
Q ss_pred EEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCC-
Q 044790 5 AVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPI- 83 (162)
Q Consensus 5 ~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~- 83 (162)
.+.++.++++.+.. ..||+||+|+.||+++|+++++.|+... +.+|||++|+....+...+++..|+++||.||+
T Consensus 2 ~a~~g~~al~~l~~--~~pDlVL~D~~mp~~~Gle~~~~ir~~~--~~ipiI~lt~~~~~~~~~~al~~Ga~dyl~KP~~ 77 (303)
T PRK10693 2 LAANGVDALELLGG--FTPDLIICDLAMPRMNGIEFVEHLRNRG--DQTPVLVISATENMADIAKALRLGVQDVLLKPVK 77 (303)
T ss_pred EeCCHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHhcC--CCCcEEEEECCCCHHHHHHHHHCCCcEEEECCCC
Confidence 57899999999988 8899999999999999999999999865 789999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhc
Q 044790 84 RKNELQNLWQHVWRKC 99 (162)
Q Consensus 84 ~~~~L~~~i~~~l~~~ 99 (162)
+.++|..+|...++..
T Consensus 78 ~~~~L~~~i~~~l~~~ 93 (303)
T PRK10693 78 DLNRLREMVFACLYPS 93 (303)
T ss_pred cHHHHHHHHHHHhhhh
Confidence 5899999998876543
No 31
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.59 E-value=9.6e-15 Score=119.46 Aligned_cols=95 Identities=21% Similarity=0.341 Sum_probs=86.8
Q ss_pred EEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeC
Q 044790 2 AVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVK 81 (162)
Q Consensus 2 ~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~K 81 (162)
.+..+.++.+++..+.+ .+||+||+|+.||+++|+++++.|++....+.+|||++|+..+.+...+++..|+.+||.|
T Consensus 180 ~~~~~~~~~~a~~~~~~--~~~d~vi~d~~~p~~~g~~l~~~i~~~~~~~~~~ii~ls~~~~~~~~~~a~~~Ga~d~l~k 257 (457)
T PRK09581 180 RVVVVSDPSEALFNAAE--TNYDLVIVSANFENYDPLRLCSQLRSKERTRYVPILLLVDEDDDPRLVKALELGVNDYLMR 257 (457)
T ss_pred eeeeecChHHHHHhccc--CCCCEEEecCCCCCchHhHHHHHHHhccccCCCcEEEEeCCCChHHHHHHHHccchhhhhC
Confidence 45678999999999888 8999999999999999999999999765558999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHh
Q 044790 82 PIRKNELQNLWQHVWRK 98 (162)
Q Consensus 82 P~~~~~L~~~i~~~l~~ 98 (162)
|++.++|...|...+..
T Consensus 258 p~~~~~l~~~i~~~~~~ 274 (457)
T PRK09581 258 PIDKNELLARVRTQIRR 274 (457)
T ss_pred CCcHHHHHHHHHHHHHH
Confidence 99999999999876553
No 32
>TIGR02875 spore_0_A sporulation transcription factor Spo0A. Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species.
Probab=99.58 E-value=4.4e-14 Score=108.81 Aligned_cols=93 Identities=27% Similarity=0.461 Sum_probs=84.5
Q ss_pred EEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCC
Q 044790 4 IAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPI 83 (162)
Q Consensus 4 ~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~ 83 (162)
..+.++.++++.+.. ..||+||+|+.||+++|+++++.|+.......+|||++|+.........++..|+++|+.||+
T Consensus 32 ~~a~~~~eal~~l~~--~~~DlvllD~~mp~~dG~~~l~~i~~~~~~~~~~iI~lt~~~~~~~~~~~~~~G~~~~l~KP~ 109 (262)
T TIGR02875 32 GVAHNGVDALELIKE--QQPDVVVLDIIMPHLDGIGVLEKLNEIELSARPRVIMLSAFGQEKITQRAVALGADYYVLKPF 109 (262)
T ss_pred EEeCCHHHHHHHHHh--cCCCEEEEeCCCCCCCHHHHHHHHHhhccccCCeEEEEeCCCCHHHHHHHHHCCCCEEEECCC
Confidence 468999999999998 889999999999999999999999976533348999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHh
Q 044790 84 RKNELQNLWQHVWRK 98 (162)
Q Consensus 84 ~~~~L~~~i~~~l~~ 98 (162)
+.++|..+|+.++..
T Consensus 110 ~~~~L~~~i~~~~~~ 124 (262)
T TIGR02875 110 DLEILAARIRQLAWG 124 (262)
T ss_pred CHHHHHHHHHHHHcc
Confidence 999999999988765
No 33
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=99.58 E-value=5.6e-15 Score=113.69 Aligned_cols=92 Identities=21% Similarity=0.402 Sum_probs=82.9
Q ss_pred EEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeC
Q 044790 2 AVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVK 81 (162)
Q Consensus 2 ~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~K 81 (162)
.+..|+...+|++.+.. ..|||||+|+.||+|+|++|++++|... +.+|||++|++. ++...++...++|||.|
T Consensus 26 ~~~~~~~~~eal~~Le~--~kpDLifldI~mp~~ngiefaeQvr~i~--~~v~iifIssh~--eya~dsf~~n~~dYl~K 99 (361)
T COG3947 26 EVRSCSHPVEALDLLEV--FKPDLIFLDIVMPYMNGIEFAEQVRDIE--SAVPIIFISSHA--EYADDSFGMNLDDYLPK 99 (361)
T ss_pred hhhccCCHHHHHHHHHh--cCCCEEEEEeecCCccHHHHHHHHHHhh--ccCcEEEEecch--hhhhhhcccchHhhccC
Confidence 35678999999999999 9999999999999999999999999977 899999999974 56677888888999999
Q ss_pred CCCHHHHHHHHHHHHHhc
Q 044790 82 PIRKNELQNLWQHVWRKC 99 (162)
Q Consensus 82 P~~~~~L~~~i~~~l~~~ 99 (162)
|+.++.|-.+|.+...+.
T Consensus 100 Pvt~ekLnraIdr~~k~v 117 (361)
T COG3947 100 PVTPEKLNRAIDRRLKRV 117 (361)
T ss_pred CCCHHHHHHHHHHHhccc
Confidence 999999999999877543
No 34
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=99.58 E-value=4.8e-14 Score=107.42 Aligned_cols=95 Identities=23% Similarity=0.273 Sum_probs=83.5
Q ss_pred EEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCC
Q 044790 3 VIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKP 82 (162)
Q Consensus 3 v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP 82 (162)
+..+.++.++++.+......||+||+|+.||+++|+++++.|+... +.+|||++|+.........++..|+++||.||
T Consensus 30 ~~~~~~~~~a~~~~~~~~~~~DlvilD~~~p~~~G~eli~~l~~~~--~~~~vI~ls~~~~~~~~~~al~~Ga~~yl~Kp 107 (239)
T PRK10430 30 CGTASTLEQAKEIIFNSDTPIDLILLDIYMQQENGLDLLPVLHEAG--CKSDVIVISSAADAATIKDSLHYGVVDYLIKP 107 (239)
T ss_pred EEEeCCHHHHHHHHHhcCCCCCEEEEecCCCCCCcHHHHHHHHhhC--CCCCEEEEECCCcHHHHHHHHHcCCCEEEeCC
Confidence 3477899999998852115699999999999999999999999765 78999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhc
Q 044790 83 IRKNELQNLWQHVWRKC 99 (162)
Q Consensus 83 ~~~~~L~~~i~~~l~~~ 99 (162)
++.++|...|..++.+.
T Consensus 108 ~~~~~l~~~i~~~~~~~ 124 (239)
T PRK10430 108 FQASRFEEALTGWRQKK 124 (239)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999999998865543
No 35
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=99.58 E-value=6.4e-14 Score=105.97 Aligned_cols=95 Identities=22% Similarity=0.289 Sum_probs=86.4
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|++..+.++.++++.+.. ..||+||+|+.||+++|+++++.|+.. ..+|+|++++.........++..|+++||.
T Consensus 26 ~~v~~~~~~~~~l~~~~~--~~~dlvild~~l~~~~g~~~~~~ir~~---~~~pii~l~~~~~~~~~~~~~~~Ga~d~l~ 100 (240)
T PRK10701 26 IDVTVEPRGDRAEATILR--EQPDLVLLDIMLPGKDGMTICRDLRPK---WQGPIVLLTSLDSDMNHILALEMGACDYIL 100 (240)
T ss_pred CEEEEeCCHHHHHHHHhh--CCCCEEEEeCCCCCCCHHHHHHHHHhc---CCCCEEEEECCCCHHHHHHHHHcCCCEEEE
Confidence 467888999999999988 789999999999999999999999974 467999999988888888999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcc
Q 044790 81 KPIRKNELQNLWQHVWRKCH 100 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l~~~~ 100 (162)
||++..+|..+|+.++++..
T Consensus 101 kP~~~~~l~~~i~~~l~~~~ 120 (240)
T PRK10701 101 KTTPPAVLLARLRLHLRQNE 120 (240)
T ss_pred CCCCHHHHHHHHHHHHhccc
Confidence 99999999999999887743
No 36
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=99.58 E-value=5.7e-14 Score=104.67 Aligned_cols=96 Identities=26% Similarity=0.405 Sum_probs=87.6
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|.|..+.++.+++..+.. ..||+||+|+.||+.+|+++++.|+... +.+|||+++...+......++..|+++|+.
T Consensus 28 ~~v~~~~~~~~~~~~~~~--~~~dlvl~d~~~~~~~g~~~~~~l~~~~--~~~~ii~ls~~~~~~~~~~a~~~Ga~~~l~ 103 (228)
T PRK11083 28 FTVEWFERGLPALDKLRQ--QPPDLVILDVGLPDISGFELCRQLLAFH--PALPVIFLTARSDEVDRLVGLEIGADDYVA 103 (228)
T ss_pred CEEEEEcCHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHhhC--CCCCEEEEEcCCcHHHHHHHhhcCCCeEEE
Confidence 467788899999999887 7899999999999999999999999865 789999999998888889999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcc
Q 044790 81 KPIRKNELQNLWQHVWRKCH 100 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l~~~~ 100 (162)
||++.++|..+|+.++++..
T Consensus 104 kp~~~~~l~~~i~~~~~~~~ 123 (228)
T PRK11083 104 KPFSPREVAARVRTILRRVK 123 (228)
T ss_pred CCCCHHHHHHHHHHHHCccc
Confidence 99999999999999887654
No 37
>PRK13856 two-component response regulator VirG; Provisional
Probab=99.57 E-value=7.1e-14 Score=106.06 Aligned_cols=94 Identities=21% Similarity=0.370 Sum_probs=84.3
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCC-CHHHHHHHHHcCCceEE
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHD-SMSIVFKCLSKGAVYFL 79 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~-~~~~~~~a~~~Ga~~~l 79 (162)
|.|..+.++.++++.+.. ..||+||+|+.||+++|+++++.|+.. ..+|+|++++.. .......++..|+++||
T Consensus 26 ~~v~~~~~~~~~~~~~~~--~~~dlvi~d~~l~~~~g~~l~~~i~~~---~~~pii~lt~~~~~~~~~~~~l~~Ga~~yl 100 (241)
T PRK13856 26 FKVTAVADSQQFNRVLAS--ETVDVVVVDLNLGREDGLEIVRSLATK---SDVPIIIISGDRLEEADKVVALELGATDFI 100 (241)
T ss_pred CEEEEECCHHHHHHHHhh--CCCCEEEEeCCCCCCCHHHHHHHHHhc---CCCcEEEEECCCCcHHHHHHHHhcCcCeEE
Confidence 578889999999999988 789999999999999999999999864 478999999853 56667889999999999
Q ss_pred eCCCCHHHHHHHHHHHHHhc
Q 044790 80 VKPIRKNELQNLWQHVWRKC 99 (162)
Q Consensus 80 ~KP~~~~~L~~~i~~~l~~~ 99 (162)
.||++.++|..+|+.++++.
T Consensus 101 ~kP~~~~eL~~~i~~~l~~~ 120 (241)
T PRK13856 101 AKPFGTREFLARIRVALRVR 120 (241)
T ss_pred eCCCCHHHHHHHHHHHHhhc
Confidence 99999999999999988864
No 38
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=99.56 E-value=1.1e-13 Score=103.61 Aligned_cols=94 Identities=34% Similarity=0.521 Sum_probs=84.7
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|.+..+.++.++++.+.. .||+||+|+.||+++|+++++.|+... + +|+|++++..+......+++.|+++||.
T Consensus 26 ~~v~~~~~~~~~~~~~~~---~~d~vl~d~~~~~~~g~~~~~~l~~~~--~-~~ii~lt~~~~~~~~~~~~~~ga~~~l~ 99 (232)
T PRK10955 26 FNVIVAHDGEQALDLLDD---SIDLLLLDVMMPKKNGIDTLKELRQTH--Q-TPVIMLTARGSELDRVLGLELGADDYLP 99 (232)
T ss_pred CEEEEeCCHHHHHHHhhc---CCCEEEEeCCCCCCcHHHHHHHHHhcC--C-CcEEEEECCCCHHHHHHHHHcCCCEEEc
Confidence 467788999999998753 699999999999999999999999764 4 8999999999988899999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcc
Q 044790 81 KPIRKNELQNLWQHVWRKCH 100 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l~~~~ 100 (162)
||++.++|..+|+.++++..
T Consensus 100 kp~~~~~l~~~i~~~~~~~~ 119 (232)
T PRK10955 100 KPFNDRELVARIRAILRRSH 119 (232)
T ss_pred CCCCHHHHHHHHHHHHhccc
Confidence 99999999999999887654
No 39
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.56 E-value=7.7e-14 Score=115.18 Aligned_cols=94 Identities=18% Similarity=0.298 Sum_probs=87.0
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCC-----CCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCC
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPC-----LSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGA 75 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~-----~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga 75 (162)
|+|..+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.|+... +.+|||++|+..+.+...++++.|+
T Consensus 21 ~~v~~a~~~~~al~~l~~--~~~dlvllD~~mp~~~~~~~~g~~~l~~i~~~~--~~~piI~lt~~~~~~~~~~a~~~Ga 96 (445)
T TIGR02915 21 YELAVAADRESAIALVRR--HEPAVVTLDLGLPPDADGASEGLAALQQILAIA--PDTKVIVITGNDDRENAVKAIGLGA 96 (445)
T ss_pred CeEEEeCCHHHHHHHHhh--CCCCEEEEeCCCCCCcCCCCCHHHHHHHHHhhC--CCCCEEEEecCCCHHHHHHHHHCCc
Confidence 678899999999999998 88999999999996 89999999998765 7899999999999999999999999
Q ss_pred ceEEeCCCCHHHHHHHHHHHHHh
Q 044790 76 VYFLVKPIRKNELQNLWQHVWRK 98 (162)
Q Consensus 76 ~~~l~KP~~~~~L~~~i~~~l~~ 98 (162)
++||.||++.++|..+|+.++..
T Consensus 97 ~dyl~KP~~~~~L~~~i~~~~~~ 119 (445)
T TIGR02915 97 YDFYQKPIDPDVLKLIVDRAFHL 119 (445)
T ss_pred cEEEeCCCCHHHHHHHHhhhhhh
Confidence 99999999999999999877653
No 40
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=99.55 E-value=1.5e-13 Score=102.32 Aligned_cols=94 Identities=26% Similarity=0.420 Sum_probs=86.3
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|.+..+.++.+++..+.. ..||+||+|+.||+++|+++++.++.. ..+|+|++++.........++..|+++|+.
T Consensus 25 ~~v~~~~~~~~~l~~~~~--~~~dlvi~d~~~~~~~g~~~~~~l~~~---~~~~ii~ls~~~~~~~~~~a~~~Ga~~~l~ 99 (223)
T PRK11517 25 YVIDAVSDGRDGLYLALK--DDYALIILDIMLPGMDGWQILQTLRTA---KQTPVICLTARDSVDDRVRGLDSGANDYLV 99 (223)
T ss_pred CEEEEECCHHHHHHHHhc--CCCCEEEEECCCCCCCHHHHHHHHHcC---CCCCEEEEECCCCHHHHHHHHhcCCCEEEE
Confidence 457789999999999987 789999999999999999999999874 468999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhc
Q 044790 81 KPIRKNELQNLWQHVWRKC 99 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l~~~ 99 (162)
||++.++|..+|+.++++.
T Consensus 100 kp~~~~~l~~~i~~~~~~~ 118 (223)
T PRK11517 100 KPFSFSELLARVRAQLRQH 118 (223)
T ss_pred CCCCHHHHHHHHHHHHccc
Confidence 9999999999999988764
No 41
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=99.55 E-value=7.6e-14 Score=123.72 Aligned_cols=96 Identities=18% Similarity=0.314 Sum_probs=87.4
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccC--CCCCCcEEEEecCCCHHHHHHHHHcCCceE
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHK--TCKNIPVIMMSSHDSMSIVFKCLSKGAVYF 78 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~--~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~ 78 (162)
|+|..+.++.+|++.+.. ..||+||+|+.||+++|+++++.||... ..+.+|||++|+........+++..|+++|
T Consensus 715 ~~v~~a~~~~~al~~~~~--~~~dlil~D~~mp~~~G~~~~~~ir~~~~~~~~~~pii~lt~~~~~~~~~~~~~~G~~~~ 792 (921)
T PRK15347 715 QQVTTAASGTEALELGRQ--HRFDLVLMDIRMPGLDGLETTQLWRDDPNNLDPDCMIVALTANAAPEEIHRCKKAGMNHY 792 (921)
T ss_pred CEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHhchhhcCCCCcEEEEeCCCCHHHHHHHHHCCCCEE
Confidence 578899999999999988 8999999999999999999999999742 226799999999999999999999999999
Q ss_pred EeCCCCHHHHHHHHHHHHHh
Q 044790 79 LVKPIRKNELQNLWQHVWRK 98 (162)
Q Consensus 79 l~KP~~~~~L~~~i~~~l~~ 98 (162)
|.||++.++|..+|..++..
T Consensus 793 l~KP~~~~~L~~~l~~~~~~ 812 (921)
T PRK15347 793 LTKPVTLAQLARALELAAEY 812 (921)
T ss_pred EECCCCHHHHHHHHHHHHhh
Confidence 99999999999999987653
No 42
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=99.55 E-value=1.7e-13 Score=100.79 Aligned_cols=95 Identities=19% Similarity=0.262 Sum_probs=86.3
Q ss_pred CEEE-EEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEE
Q 044790 1 MAVI-AVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFL 79 (162)
Q Consensus 1 ~~v~-~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l 79 (162)
|.+. .+.++.++++.+.. ..||+||+|+.+|+++|+++++.++... +..|+|++++.........++..|+++|+
T Consensus 25 ~~v~~~~~~~~~~~~~~~~--~~~dlvi~d~~~~~~~g~~~~~~l~~~~--~~~~ii~ls~~~~~~~~~~~~~~ga~~~i 100 (204)
T PRK09958 25 IEILAELTEGGSAVQRVET--LKPDIVIIDVDIPGVNGIQVLETLRKRQ--YSGIIIIVSAKNDHFYGKHCADAGANGFV 100 (204)
T ss_pred CEEEEEeCCHHHHHHHHHc--cCCCEEEEeCCCCCCCHHHHHHHHHhhC--CCCeEEEEeCCCCHHHHHHHHHCCCCEEE
Confidence 3455 68999999999988 7899999999999999999999998765 67899999999999999999999999999
Q ss_pred eCCCCHHHHHHHHHHHHHhc
Q 044790 80 VKPIRKNELQNLWQHVWRKC 99 (162)
Q Consensus 80 ~KP~~~~~L~~~i~~~l~~~ 99 (162)
.||++.++|..+|+.++++.
T Consensus 101 ~kp~~~~~l~~~i~~~~~~~ 120 (204)
T PRK09958 101 SKKEGMNNIIAAIEAAKNGY 120 (204)
T ss_pred ecCCCHHHHHHHHHHHHcCC
Confidence 99999999999999988764
No 43
>PRK09483 response regulator; Provisional
Probab=99.55 E-value=1.8e-13 Score=101.65 Aligned_cols=96 Identities=24% Similarity=0.348 Sum_probs=87.1
Q ss_pred EEE-EEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 2 AVI-AVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 2 ~v~-~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
.+. .+.++.++++.+.. ..||+||+|+.+|+.+|+++++.|+... +.+|+|+++..........++..|+++|+.
T Consensus 28 ~~v~~~~~~~~~~~~~~~--~~~dlvi~d~~~~~~~g~~~~~~l~~~~--~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~ 103 (217)
T PRK09483 28 KVVGEACCGEDAVKWCRT--NAVDVVLMDMNMPGIGGLEATRKILRYT--PDVKIIMLTVHTENPLPAKVMQAGAAGYLS 103 (217)
T ss_pred EEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCCCCHHHHHHHHHHHC--CCCeEEEEeCCCCHHHHHHHHHcCCCEEEe
Confidence 443 68899999999988 8899999999999999999999998755 789999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhccC
Q 044790 81 KPIRKNELQNLWQHVWRKCHS 101 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l~~~~~ 101 (162)
||++.++|..+|+.++++..+
T Consensus 104 k~~~~~~l~~~i~~~~~g~~~ 124 (217)
T PRK09483 104 KGAAPQEVVSAIRSVHSGQRY 124 (217)
T ss_pred CCCCHHHHHHHHHHHHCCCcc
Confidence 999999999999999876543
No 44
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=99.54 E-value=8.7e-14 Score=124.00 Aligned_cols=96 Identities=25% Similarity=0.333 Sum_probs=88.0
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCC-CcEEEEecCCCHHHHHHHHHcCCceEE
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKN-IPVIMMSSHDSMSIVFKCLSKGAVYFL 79 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~-~piI~lt~~~~~~~~~~a~~~Ga~~~l 79 (162)
|+|.++.++.+|++.+.. ..||+||+|+.||+++|+++++.||....... +|||++|+....+....++..|+++||
T Consensus 727 ~~v~~~~~~~~a~~~l~~--~~~dlvl~D~~mp~~~g~~~~~~ir~~~~~~~~~pii~lta~~~~~~~~~~~~~G~~~~l 804 (968)
T TIGR02956 727 HKVTLAESGQSALECFHQ--HAFDLALLDINLPDGDGVTLLQQLRAIYGAKNEVKFIAFSAHVFNEDVAQYLAAGFDGFL 804 (968)
T ss_pred CEEEEECCHHHHHHHHHC--CCCCEEEECCCCCCCCHHHHHHHHHhCccccCCCeEEEEECCCCHHHHHHHHHCCCCEEE
Confidence 578899999999999998 89999999999999999999999998652222 999999999999999999999999999
Q ss_pred eCCCCHHHHHHHHHHHHHh
Q 044790 80 VKPIRKNELQNLWQHVWRK 98 (162)
Q Consensus 80 ~KP~~~~~L~~~i~~~l~~ 98 (162)
.||++.++|...|..++..
T Consensus 805 ~KP~~~~~L~~~l~~~~~~ 823 (968)
T TIGR02956 805 AKPVVEEQLTAMIAVILAG 823 (968)
T ss_pred eCCCCHHHHHHHHHHHhcc
Confidence 9999999999999998764
No 45
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=99.54 E-value=9.3e-14 Score=123.28 Aligned_cols=96 Identities=23% Similarity=0.261 Sum_probs=87.5
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|+|..+.++.+|++.+... .+||+||+|+.||+++|+++++.||... +.+|||++|+........+++..|+++||.
T Consensus 706 ~~v~~a~~~~~al~~~~~~-~~~Dlvl~D~~mp~~~G~~~~~~lr~~~--~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~ 782 (914)
T PRK11466 706 AQVVAVGNAAQALETLQNS-EPFAAALVDFDLPDYDGITLARQLAQQY--PSLVLIGFSAHVIDETLRQRTSSLFRGIIP 782 (914)
T ss_pred CceEEeCCHHHHHHHHHcC-CCCCEEEEeCCCCCCCHHHHHHHHHhhC--CCCCEEEEeCCCchhhHHHHHhcCcCCEEe
Confidence 5788999999999988641 5789999999999999999999999854 789999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhc
Q 044790 81 KPIRKNELQNLWQHVWRKC 99 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l~~~ 99 (162)
||++.++|...|.++++..
T Consensus 783 KP~~~~~L~~~i~~~~~~~ 801 (914)
T PRK11466 783 KPVPREVLGQLLAHYLQLQ 801 (914)
T ss_pred CCCCHHHHHHHHHHHhhhc
Confidence 9999999999999988654
No 46
>CHL00148 orf27 Ycf27; Reviewed
Probab=99.54 E-value=2.3e-13 Score=102.33 Aligned_cols=95 Identities=32% Similarity=0.543 Sum_probs=86.5
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|.+..+.++.+++..+.. ..||+||+|+.||+.+|+++++.++.. +.+|+|++++..+......++..|+++||.
T Consensus 31 ~~v~~~~~~~~~l~~~~~--~~~d~illd~~~~~~~g~~~~~~l~~~---~~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~ 105 (240)
T CHL00148 31 YEVITASDGEEALKLFRK--EQPDLVILDVMMPKLDGYGVCQEIRKE---SDVPIIMLTALGDVSDRITGLELGADDYVV 105 (240)
T ss_pred CEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCCCCHHHHHHHHHhc---CCCcEEEEECCCCHHhHHHHHHCCCCEEEe
Confidence 467788899999999887 789999999999999999999999874 579999999999999889999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcc
Q 044790 81 KPIRKNELQNLWQHVWRKCH 100 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l~~~~ 100 (162)
||++.++|..+|+.++++..
T Consensus 106 kp~~~~~L~~~i~~~~~~~~ 125 (240)
T CHL00148 106 KPFSPKELEARIRSVLRRTN 125 (240)
T ss_pred CCCCHHHHHHHHHHHHhhcc
Confidence 99999999999999887653
No 47
>PRK14084 two-component response regulator; Provisional
Probab=99.54 E-value=1.9e-13 Score=104.08 Aligned_cols=92 Identities=22% Similarity=0.320 Sum_probs=80.9
Q ss_pred EEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeC
Q 044790 2 AVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVK 81 (162)
Q Consensus 2 ~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~K 81 (162)
.+..+.++.++++.+.+ ..||+||+|+.||+++|+++++.|+... +..+||++|+.. +...++++.|+.+||.|
T Consensus 28 ~v~~~~~~~~~l~~~~~--~~~dlv~lDi~m~~~~G~~~~~~i~~~~--~~~~iI~~t~~~--~~~~~~~~~~~~~yl~K 101 (246)
T PRK14084 28 EINEAENVKETLEALLI--NQYDIIFLDINLMDESGIELAAKIQKMK--EPPAIIFATAHD--QFAVKAFELNATDYILK 101 (246)
T ss_pred EEEEECCHHHHHHHHHh--cCCCEEEEeCCCCCCCHHHHHHHHHhcC--CCCEEEEEecCh--HHHHHHHhcCCcEEEEC
Confidence 35678999999999988 7899999999999999999999999865 667888888764 45678999999999999
Q ss_pred CCCHHHHHHHHHHHHHhc
Q 044790 82 PIRKNELQNLWQHVWRKC 99 (162)
Q Consensus 82 P~~~~~L~~~i~~~l~~~ 99 (162)
|++.++|...|++++...
T Consensus 102 P~~~~~l~~~l~~~~~~~ 119 (246)
T PRK14084 102 PFEQKRIEQAVNKVRATK 119 (246)
T ss_pred CCCHHHHHHHHHHHHHhh
Confidence 999999999999987654
No 48
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=99.52 E-value=3.8e-13 Score=99.02 Aligned_cols=92 Identities=17% Similarity=0.279 Sum_probs=84.5
Q ss_pred EEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCC
Q 044790 5 AVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIR 84 (162)
Q Consensus 5 ~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~ 84 (162)
.+.++.++++.+.. ..||+||+|+.||+++|+++++.++... +.+|||+++..........++..|+++|+.||++
T Consensus 34 ~~~~~~~~~~~~~~--~~~dlvild~~l~~~~g~~~~~~l~~~~--~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~ 109 (210)
T PRK09935 34 KTDDYRITIDYLRT--RPVDLIIMDIDLPGTDGFTFLKRIKQIQ--STVKVLFLSSKSECFYAGRAIQAGANGFVSKCND 109 (210)
T ss_pred EeCCHHHHHHHHHh--cCCCEEEEeCCCCCCCHHHHHHHHHHhC--CCCcEEEEECCCcHHHHHHHHHcCCCEEEeCCCC
Confidence 67899999999887 7899999999999999999999999754 7899999999999899999999999999999999
Q ss_pred HHHHHHHHHHHHHhcc
Q 044790 85 KNELQNLWQHVWRKCH 100 (162)
Q Consensus 85 ~~~L~~~i~~~l~~~~ 100 (162)
.++|...|+.++.+..
T Consensus 110 ~~~l~~~i~~~l~~~~ 125 (210)
T PRK09935 110 QNDIFHAVQMILSGYT 125 (210)
T ss_pred HHHHHHHHHHHHcCCc
Confidence 9999999999887643
No 49
>PRK15115 response regulator GlrR; Provisional
Probab=99.50 E-value=3.1e-13 Score=111.53 Aligned_cols=95 Identities=24% Similarity=0.526 Sum_probs=88.0
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|.|..+.++.++++.+.. ..||+||+|+.||+++|+++++.++... +.+|||++++........+++..|+.+||.
T Consensus 30 ~~v~~~~~~~eal~~l~~--~~~dlvilD~~lp~~~g~~ll~~l~~~~--~~~pvIvlt~~~~~~~~~~a~~~Ga~~~l~ 105 (444)
T PRK15115 30 YSVVTAESGQEALRVLNR--EKVDLVISDLRMDEMDGMQLFAEIQKVQ--PGMPVIILTAHGSIPDAVAATQQGVFSFLT 105 (444)
T ss_pred CEEEEeCCHHHHHHHHhc--CCCCEEEEcCCCCCCCHHHHHHHHHhcC--CCCcEEEEECCCCHHHHHHHHhcChhhhcc
Confidence 568899999999999988 7899999999999999999999998765 789999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhc
Q 044790 81 KPIRKNELQNLWQHVWRKC 99 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l~~~ 99 (162)
||++.++|...|..++...
T Consensus 106 KP~~~~~L~~~l~~~~~~~ 124 (444)
T PRK15115 106 KPVDRDALYKAIDDALEQS 124 (444)
T ss_pred CCCCHHHHHHHHHHHHHhh
Confidence 9999999999999988754
No 50
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.49 E-value=4.6e-13 Score=110.76 Aligned_cols=94 Identities=27% Similarity=0.468 Sum_probs=86.9
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|+|..+.++.++++.+.. ..||+||+|+.||+++|+++++.++... +.+|||++|+..+......++..|+++|+.
T Consensus 29 ~~v~~~~~~~~al~~l~~--~~~dlillD~~~p~~~g~~ll~~i~~~~--~~~pvI~lt~~~~~~~~~~a~~~Ga~d~l~ 104 (457)
T PRK11361 29 FETHCANNGRTALHLFAD--IHPDVVLMDIRMPEMDGIKALKEMRSHE--TRTPVILMTAYAEVETAVEALRCGAFDYVI 104 (457)
T ss_pred CEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHhcC--CCCCEEEEeCCCCHHHHHHHHHCCccEEEe
Confidence 578889999999999988 7899999999999999999999998765 789999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHh
Q 044790 81 KPIRKNELQNLWQHVWRK 98 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l~~ 98 (162)
||++.++|...|..++..
T Consensus 105 KP~~~~~L~~~i~~~l~~ 122 (457)
T PRK11361 105 KPFDLDELNLIVQRALQL 122 (457)
T ss_pred cccCHHHHHHHHhhhccc
Confidence 999999999999877653
No 51
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=99.49 E-value=6.6e-13 Score=116.33 Aligned_cols=96 Identities=20% Similarity=0.369 Sum_probs=83.6
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCC-CcEEEEecCCCHHHHHHHHHcCCceEE
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKN-IPVIMMSSHDSMSIVFKCLSKGAVYFL 79 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~-~piI~lt~~~~~~~~~~a~~~Ga~~~l 79 (162)
|.|..+.++.+|++.+.. ..||+||+|+.||+++|+++++.||.....+. +|||++|+.... ....++..|+++||
T Consensus 550 ~~v~~a~~~~eal~~~~~--~~~Dlvl~D~~mp~~~G~e~~~~ir~~~~~~~~~~ii~~ta~~~~-~~~~~~~~G~~~~l 626 (779)
T PRK11091 550 NSVDVAMTGKEALEMFDP--DEYDLVLLDIQLPDMTGLDIARELRERYPREDLPPLVALTANVLK-DKKEYLDAGMDDVL 626 (779)
T ss_pred CEEEEECCHHHHHHHhhc--CCCCEEEEcCCCCCCCHHHHHHHHHhccccCCCCcEEEEECCchH-hHHHHHHCCCCEEE
Confidence 578899999999999987 88999999999999999999999997643345 489999987654 46789999999999
Q ss_pred eCCCCHHHHHHHHHHHHHhc
Q 044790 80 VKPIRKNELQNLWQHVWRKC 99 (162)
Q Consensus 80 ~KP~~~~~L~~~i~~~l~~~ 99 (162)
.||++.++|...|++++...
T Consensus 627 ~KP~~~~~L~~~l~~~~~~~ 646 (779)
T PRK11091 627 SKPLSVPALTAMIKKFWDTQ 646 (779)
T ss_pred ECCCCHHHHHHHHHHHhccc
Confidence 99999999999999887543
No 52
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.49 E-value=7.1e-13 Score=110.16 Aligned_cols=94 Identities=26% Similarity=0.498 Sum_probs=87.3
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|.|..+.++.+++..+.. ..||+||+|+.||+++|+++++.|+... +.+|+|++++....+....+++.|+.+||.
T Consensus 28 ~~v~~~~s~~~al~~l~~--~~~DlvllD~~lp~~dgl~~l~~ir~~~--~~~pvIvlt~~~~~~~~~~a~~~Ga~~~l~ 103 (469)
T PRK10923 28 LTCTTFENGNEVLEALAS--KTPDVLLSDIRMPGMDGLALLKQIKQRH--PMLPVIIMTAHSDLDAAVSAYQQGAFDYLP 103 (469)
T ss_pred CEEEEECCHHHHHHHHhc--CCCCEEEECCCCCCCCHHHHHHHHHhhC--CCCeEEEEECCCCHHHHHHHHhcCcceEEe
Confidence 568899999999999988 8899999999999999999999998765 789999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHh
Q 044790 81 KPIRKNELQNLWQHVWRK 98 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l~~ 98 (162)
||++.++|...|..++..
T Consensus 104 KP~~~~~L~~~i~~~l~~ 121 (469)
T PRK10923 104 KPFDIDEAVALVERAISH 121 (469)
T ss_pred cCCcHHHHHHHHHHHHHH
Confidence 999999999999887764
No 53
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=99.48 E-value=6.1e-13 Score=121.15 Aligned_cols=94 Identities=24% Similarity=0.366 Sum_probs=87.4
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|+|..+.++.+|++.+.. ..||+||+|+.||+++|+++++.|+... +.+|||++|+........+++..|+++||.
T Consensus 983 ~~v~~~~~~~~al~~~~~--~~~dlil~D~~mp~~~g~~~~~~i~~~~--~~~pii~lt~~~~~~~~~~~~~~G~~~~l~ 1058 (1197)
T PRK09959 983 YDVDEATDGVQALHKVSM--QHYDLLITDVNMPNMDGFELTRKLREQN--SSLPIWGLTANAQANEREKGLSCGMNLCLF 1058 (1197)
T ss_pred CEEEEECCHHHHHHHhhc--CCCCEEEEeCCCCCCCHHHHHHHHHhcC--CCCCEEEEECCCCHHHHHHHHHCCCCEEEe
Confidence 578899999999999988 8899999999999999999999999865 789999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHh
Q 044790 81 KPIRKNELQNLWQHVWRK 98 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l~~ 98 (162)
||++.++|...|++++..
T Consensus 1059 KP~~~~~L~~~l~~~~~~ 1076 (1197)
T PRK09959 1059 KPLTLDVLKTHLSQLHQV 1076 (1197)
T ss_pred CCCCHHHHHHHHHHHhhc
Confidence 999999999999887654
No 54
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.48 E-value=3.7e-13 Score=110.84 Aligned_cols=94 Identities=29% Similarity=0.473 Sum_probs=87.0
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|.|..+.++.++++.+.. ..||+||+|+.||+++|+++++.|+... +.+|||++|+....+....++..|+.+||.
T Consensus 30 ~~v~~~~~~~~al~~l~~--~~~DlvilD~~m~~~~G~~~~~~ir~~~--~~~~vi~lt~~~~~~~~~~a~~~ga~~~l~ 105 (441)
T PRK10365 30 YNVALANSGRQALEQVRE--QVFDLVLCDVRMAEMDGIATLKEIKALN--PAIPVLIMTAYSSVETAVEALKTGALDYLI 105 (441)
T ss_pred CeEEEeCCHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHhhC--CCCeEEEEECCCCHHHHHHHHHhhhHHHhc
Confidence 567889999999999988 7899999999999999999999999865 789999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHh
Q 044790 81 KPIRKNELQNLWQHVWRK 98 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l~~ 98 (162)
||++.++|...|..++..
T Consensus 106 Kp~~~~~L~~~l~~~l~~ 123 (441)
T PRK10365 106 KPLDFDNLQATLEKALAH 123 (441)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999887764
No 55
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.48 E-value=7.5e-13 Score=109.75 Aligned_cols=94 Identities=28% Similarity=0.456 Sum_probs=86.9
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|.|..+.++.+++..+.. ..||+||+|+.||+++|+++++.|+... +.+|||++++........+++..|+++|+.
T Consensus 23 ~~v~~~~~~~~al~~~~~--~~~DlVllD~~~p~~~g~~ll~~l~~~~--~~~~vIvlt~~~~~~~~~~a~~~Ga~~~l~ 98 (463)
T TIGR01818 23 YEVRTFGNAASVLRALAR--GQPDLLITDVRMPGEDGLDLLPQIKKRH--PQLPVIVMTAHSDLDTAVAAYQRGAFEYLP 98 (463)
T ss_pred CEEEEECCHHHHHHHHhc--CCCCEEEEcCCCCCCCHHHHHHHHHHhC--CCCeEEEEeCCCCHHHHHHHHHcCcceeec
Confidence 568889999999999988 7899999999999999999999998765 789999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHh
Q 044790 81 KPIRKNELQNLWQHVWRK 98 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l~~ 98 (162)
||++.++|...|..++..
T Consensus 99 KP~~~~~L~~~i~~~l~~ 116 (463)
T TIGR01818 99 KPFDLDEAVTLVERALAH 116 (463)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999987764
No 56
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.48 E-value=1.1e-12 Score=107.29 Aligned_cols=97 Identities=29% Similarity=0.440 Sum_probs=88.3
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|+|..+.++.++++.+.. ..||+||+|+.||+.+|+++++.|+.....+.+|||++++........+++..|+++|+.
T Consensus 27 ~~v~~~~~~~~~~~~~~~--~~~dlvi~d~~~~~~~g~~l~~~i~~~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~ 104 (457)
T PRK09581 27 YTVLTASSGAEAIAICER--EQPDIILLDVMMPGMDGFEVCRRLKSDPATTHIPVVMVTALDDPEDRVRGLEAGADDFLT 104 (457)
T ss_pred CEEEEeCCHHHHHHHHhh--cCCCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCEEEEECCCCHHHHHHHHHCCCCEEEE
Confidence 578899999999999988 789999999999999999999999976544679999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhc
Q 044790 81 KPIRKNELQNLWQHVWRKC 99 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l~~~ 99 (162)
||++.++|..+|+.+++..
T Consensus 105 kp~~~~~l~~~i~~~~~~~ 123 (457)
T PRK09581 105 KPINDVALFARVKSLTRLK 123 (457)
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999999999999887643
No 57
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=99.48 E-value=1.1e-12 Score=95.95 Aligned_cols=90 Identities=30% Similarity=0.392 Sum_probs=82.1
Q ss_pred EEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCC
Q 044790 3 VIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKP 82 (162)
Q Consensus 3 v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP 82 (162)
+..+.++.++++.+.. ..||+||+|+.+|+.+|+++++.++ +.+|||+++..........++..|+++|+.||
T Consensus 30 ~~~~~~~~~~l~~~~~--~~~dlvi~d~~~~~~~g~~~~~~l~-----~~~~vi~~s~~~~~~~~~~~~~~ga~~~i~kp 102 (196)
T PRK10360 30 VAEFGSGREALAGLPG--RGVQVCICDISMPDISGLELLSQLP-----KGMATIMLSVHDSPALVEQALNAGARGFLSKR 102 (196)
T ss_pred EEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHc-----cCCCEEEEECCCCHHHHHHHHHcCCcEEEECC
Confidence 4578899999999987 7899999999999999999999985 35799999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhc
Q 044790 83 IRKNELQNLWQHVWRKC 99 (162)
Q Consensus 83 ~~~~~L~~~i~~~l~~~ 99 (162)
++.++|..+|+.++++.
T Consensus 103 ~~~~~l~~~i~~~~~~~ 119 (196)
T PRK10360 103 CSPDELIAAVHTVATGG 119 (196)
T ss_pred CCHHHHHHHHHHHHcCC
Confidence 99999999999998763
No 58
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=99.47 E-value=2.6e-12 Score=95.23 Aligned_cols=96 Identities=25% Similarity=0.453 Sum_probs=86.9
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
+.+..+.++.++++.+.. ..||+||+|+.+|+++|+++++.++... +.+|+|+++...+.....+++..|+++|+.
T Consensus 25 ~~v~~~~~~~~~~~~~~~--~~~d~vild~~~~~~~~~~~~~~i~~~~--~~~~ii~lt~~~~~~~~~~~~~~g~~~~i~ 100 (221)
T PRK15479 25 FAVDCVFDGLAADHLLQS--EMYALAVLDINMPGMDGLEVLQRLRKRG--QTLPVLLLTARSAVADRVKGLNVGADDYLP 100 (221)
T ss_pred CEEEEeCCHHHHHHHHhh--CCCCEEEEeCCCCCCcHHHHHHHHHhcC--CCCCEEEEECCCCHHHHHHHHHcCCCeeEe
Confidence 356788999999998887 7899999999999999999999998765 689999999999999889999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcc
Q 044790 81 KPIRKNELQNLWQHVWRKCH 100 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l~~~~ 100 (162)
||++.++|...++.++++..
T Consensus 101 kp~~~~~l~~~i~~~~~~~~ 120 (221)
T PRK15479 101 KPFELEELDARLRALLRRSA 120 (221)
T ss_pred CCCCHHHHHHHHHHHHhhhc
Confidence 99999999999998887643
No 59
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=99.47 E-value=4.4e-13 Score=94.17 Aligned_cols=90 Identities=13% Similarity=0.281 Sum_probs=85.9
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|.|..+++..|+|..++. ..|...++|+.|.+.+|+.+++.||+.. ++..||++|++.+.-...+|.+.|+.+||.
T Consensus 34 f~v~~a~~~~eal~~art--~~PayAvvDlkL~~gsGL~~i~~lr~~~--~d~rivvLTGy~sIATAV~AvKlGA~~YLa 109 (182)
T COG4567 34 FAVVTAESVEEALAAART--APPAYAVVDLKLGDGSGLAVIEALRERR--ADMRIVVLTGYASIATAVEAVKLGACDYLA 109 (182)
T ss_pred ceeEeeccHHHHHHHHhc--CCCceEEEEeeecCCCchHHHHHHHhcC--CcceEEEEecchHHHHHHHHHHhhhhhhcC
Confidence 689999999999999999 8999999999999999999999999977 899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHH
Q 044790 81 KPIRKNELQNLWQH 94 (162)
Q Consensus 81 KP~~~~~L~~~i~~ 94 (162)
||-+.+++..++.+
T Consensus 110 KPAdaDdi~aAl~~ 123 (182)
T COG4567 110 KPADADDILAALLR 123 (182)
T ss_pred CCCChHHHHHHHhh
Confidence 99999999988864
No 60
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=99.45 E-value=3.1e-12 Score=96.22 Aligned_cols=95 Identities=22% Similarity=0.400 Sum_probs=86.1
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|.|..+.++.+++..+.. ..||+||+|+.||+++|+++++.|+.. +.+|+|+++..........++..|+++|+.
T Consensus 35 ~~v~~~~~~~~~~~~~~~--~~~dlvl~d~~~~~~~g~~~~~~l~~~---~~~pii~l~~~~~~~~~~~~~~~ga~~~l~ 109 (240)
T PRK10710 35 YATTLLSHGDEVLPYVRQ--TPPDLILLDLMLPGTDGLTLCREIRRF---SDIPIVMVTAKIEEIDRLLGLEIGADDYIC 109 (240)
T ss_pred CEEEEeCCHHHHHHHHhh--CCCCEEEEeCCCCCCCHHHHHHHHHhc---CCCCEEEEEcCCCHHHHHHHHhcCCCeEEE
Confidence 467788999999999987 789999999999999999999999863 578999999988888888999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcc
Q 044790 81 KPIRKNELQNLWQHVWRKCH 100 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l~~~~ 100 (162)
||++.++|..+|+.++++..
T Consensus 110 kp~~~~~L~~~i~~~~~~~~ 129 (240)
T PRK10710 110 KPYSPREVVARVKTILRRCK 129 (240)
T ss_pred CCCCHHHHHHHHHHHHhhcc
Confidence 99999999999999887643
No 61
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=99.45 E-value=1.8e-12 Score=98.12 Aligned_cols=89 Identities=20% Similarity=0.343 Sum_probs=76.4
Q ss_pred EEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCC
Q 044790 3 VIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKP 82 (162)
Q Consensus 3 v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP 82 (162)
+..+.++.++++.+.. ..||++|+|+.||+++|+++++.++.. ...+||++|+.. +...+++..|+.+||.||
T Consensus 30 ~~~~~~~~~~l~~~~~--~~~dlv~lDi~~~~~~G~~~~~~l~~~---~~~~ii~vt~~~--~~~~~a~~~~~~~yl~KP 102 (238)
T PRK11697 30 VGECSNAIEAIGAIHR--LKPDVVFLDIQMPRISGLELVGMLDPE---HMPYIVFVTAFD--EYAIKAFEEHAFDYLLKP 102 (238)
T ss_pred EEEeCCHHHHHHHHHh--cCCCEEEEeCCCCCCCHHHHHHHhccc---CCCEEEEEeccH--HHHHHHHhcCCcEEEECC
Confidence 3468899999999987 789999999999999999999998642 345688888754 567899999999999999
Q ss_pred CCHHHHHHHHHHHHHh
Q 044790 83 IRKNELQNLWQHVWRK 98 (162)
Q Consensus 83 ~~~~~L~~~i~~~l~~ 98 (162)
++.++|...|.++...
T Consensus 103 ~~~~~l~~~l~~~~~~ 118 (238)
T PRK11697 103 IDPARLAKTLARLRQE 118 (238)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999988764
No 62
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=99.43 E-value=1.8e-12 Score=97.87 Aligned_cols=93 Identities=10% Similarity=0.073 Sum_probs=76.8
Q ss_pred EEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHH-HHHHccCCCCCCcEEEEecCCCHHHHHHHHH--cCCceEE
Q 044790 3 VIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLL-RKIMNHKTCKNIPVIMMSSHDSMSIVFKCLS--KGAVYFL 79 (162)
Q Consensus 3 v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~-~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~--~Ga~~~l 79 (162)
+..+.++.++++.+ .+||+||+|+.||+++|++++ +.|+... +.++||++|...+ ....++. .||.+||
T Consensus 37 ~~~~~~~~~~~~~~----~~~DvvllDi~~p~~~G~~~~~~~i~~~~--p~~~vvvlt~~~~--~~~~~~~~~~Ga~G~l 108 (216)
T PRK10100 37 TGKLHNIQRSLDDI----SSGSIILLDMMEADKKLIHYWQDTLSRKN--NNIKILLLNTPED--YPYREIENWPHINGVF 108 (216)
T ss_pred eEEEcCHHHhhccC----CCCCEEEEECCCCCccHHHHHHHHHHHhC--CCCcEEEEECCch--hHHHHHHHhcCCeEEE
Confidence 34677888888863 349999999999999999997 5677755 7899999999866 3445555 4999999
Q ss_pred eCCCCHHHHHHHHHHHHHhccCCC
Q 044790 80 VKPIRKNELQNLWQHVWRKCHSSS 103 (162)
Q Consensus 80 ~KP~~~~~L~~~i~~~l~~~~~~~ 103 (162)
.|+.+.++|.++|+.++.+..+..
T Consensus 109 ~K~~~~~~L~~aI~~v~~G~~~~~ 132 (216)
T PRK10100 109 YAMEDQERVVNGLQGVLRGECYFT 132 (216)
T ss_pred ECCCCHHHHHHHHHHHHcCCcccC
Confidence 999999999999999998866543
No 63
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=99.42 E-value=2.8e-12 Score=102.56 Aligned_cols=92 Identities=25% Similarity=0.403 Sum_probs=77.8
Q ss_pred EEE-EEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCC--HHHHHHHHHcCCceE
Q 044790 2 AVI-AVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDS--MSIVFKCLSKGAVYF 78 (162)
Q Consensus 2 ~v~-~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~--~~~~~~a~~~Ga~~~ 78 (162)
++. .+.++.++++.+.. ..||+|++|+.||+++|++++++|+.. ..+|||++++... .....++++.|+++|
T Consensus 27 ~vv~~a~~~~eal~~l~~--~~pDlVllD~~mp~~~G~e~l~~l~~~---~~~pvivvs~~~~~~~~~~~~al~~Ga~d~ 101 (337)
T PRK12555 27 EVVWVATDGAQAVERCAA--QPPDVILMDLEMPRMDGVEATRRIMAE---RPCPILIVTSLTERNASRVFEAMGAGALDA 101 (337)
T ss_pred EEEEEECCHHHHHHHHhc--cCCCEEEEcCCCCCCCHHHHHHHHHHH---CCCcEEEEeCCCCcCHHHHHHHHhcCceEE
Confidence 444 68999999999998 889999999999999999999999875 3589999998643 556778999999999
Q ss_pred EeCCC---------CHHHHHHHHHHHHHh
Q 044790 79 LVKPI---------RKNELQNLWQHVWRK 98 (162)
Q Consensus 79 l~KP~---------~~~~L~~~i~~~l~~ 98 (162)
|.||+ ..++|..+|+.+.+.
T Consensus 102 l~KP~~~~~~~~~~~~~~l~~~i~~~~~~ 130 (337)
T PRK12555 102 VDTPTLGIGAGLEEYAAELLAKIDQIGRL 130 (337)
T ss_pred EECCCCCcchhHHHHHHHHHHHHHHHhhc
Confidence 99999 567777777776543
No 64
>PRK10403 transcriptional regulator NarP; Provisional
Probab=99.40 E-value=8.1e-12 Score=91.85 Aligned_cols=91 Identities=20% Similarity=0.259 Sum_probs=83.0
Q ss_pred EEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCC
Q 044790 5 AVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIR 84 (162)
Q Consensus 5 ~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~ 84 (162)
.+.++.++++.+.. ..||+||+|+.+|+++|+++++.++... +.+|+++++..........++..|+++|+.||++
T Consensus 37 ~~~~~~~~~~~~~~--~~~dlvi~d~~~~~~~~~~~~~~l~~~~--~~~~ii~l~~~~~~~~~~~~~~~g~~~~i~kp~~ 112 (215)
T PRK10403 37 EAGDGASAIDLANR--LDPDVILLDLNMKGMSGLDTLNALRRDG--VTAQIIILTVSDASSDVFALIDAGADGYLLKDSD 112 (215)
T ss_pred EeCCHHHHHHHHHh--cCCCEEEEecCCCCCcHHHHHHHHHHhC--CCCeEEEEeCCCChHHHHHHHHcCCCeEEecCCC
Confidence 68899999998887 7899999999999999999999998765 6789999998888888899999999999999999
Q ss_pred HHHHHHHHHHHHHhc
Q 044790 85 KNELQNLWQHVWRKC 99 (162)
Q Consensus 85 ~~~L~~~i~~~l~~~ 99 (162)
.++|...|+.++.+.
T Consensus 113 ~~~l~~~i~~~~~~~ 127 (215)
T PRK10403 113 PEVLLEAIRAGAKGS 127 (215)
T ss_pred HHHHHHHHHHHhCCC
Confidence 999999999887653
No 65
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=99.40 E-value=2e-11 Score=81.55 Aligned_cols=94 Identities=23% Similarity=0.451 Sum_probs=84.0
Q ss_pred EEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCC
Q 044790 3 VIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKP 82 (162)
Q Consensus 3 v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP 82 (162)
+..+.++.++++.+.. ..+|++++|..+++++|+++++.++.....+.+|+++++..........++..|+.+|+.||
T Consensus 33 ~~~~~~~~~~~~~~~~--~~~di~l~d~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~i~~p 110 (129)
T PRK10610 33 VEEAEDGVDALNKLQA--GGFGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 110 (129)
T ss_pred EEEeCCHHHHHHHhhc--cCCCEEEEcCCCCCCCHHHHHHHHHhCCCcCCCcEEEEECCCCHHHHHHHHHhCCCeEEECC
Confidence 5578899999998887 78999999999999999999999987644467899999988888888999999999999999
Q ss_pred CCHHHHHHHHHHHHHh
Q 044790 83 IRKNELQNLWQHVWRK 98 (162)
Q Consensus 83 ~~~~~L~~~i~~~l~~ 98 (162)
++.++|...++.++++
T Consensus 111 ~~~~~l~~~l~~~~~~ 126 (129)
T PRK10610 111 FTAATLEEKLNKIFEK 126 (129)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999988765
No 66
>PRK10651 transcriptional regulator NarL; Provisional
Probab=99.40 E-value=9.2e-12 Score=91.73 Aligned_cols=92 Identities=23% Similarity=0.299 Sum_probs=84.5
Q ss_pred EEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCC
Q 044790 4 IAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPI 83 (162)
Q Consensus 4 ~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~ 83 (162)
..+.++.+++..+.. ..||+||+|+.+|+++|+++++.++... +.+|+|+++..........++..|+++|+.||+
T Consensus 36 ~~~~~~~~~~~~~~~--~~~dlvl~d~~l~~~~~~~~~~~l~~~~--~~~~vi~l~~~~~~~~~~~~~~~g~~~~i~k~~ 111 (216)
T PRK10651 36 GEASNGEQGIELAES--LDPDLILLDLNMPGMNGLETLDKLREKS--LSGRIVVFSVSNHEEDVVTALKRGADGYLLKDM 111 (216)
T ss_pred EEeCCHHHHHHHHHh--CCCCEEEEeCCCCCCcHHHHHHHHHHhC--CCCcEEEEeCCCCHHHHHHHHHcCCCEEEeCCC
Confidence 358899999999988 7899999999999999999999998765 688999999998999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhc
Q 044790 84 RKNELQNLWQHVWRKC 99 (162)
Q Consensus 84 ~~~~L~~~i~~~l~~~ 99 (162)
+..+|...|+.++++.
T Consensus 112 ~~~~l~~~i~~~~~~~ 127 (216)
T PRK10651 112 EPEDLLKALQQAAAGE 127 (216)
T ss_pred CHHHHHHHHHHHHCCC
Confidence 9999999999988764
No 67
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=99.40 E-value=4.1e-12 Score=92.28 Aligned_cols=95 Identities=26% Similarity=0.442 Sum_probs=86.4
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|.+..+.++.++++.+.. ..||+||+|+.+|+++|+++++.|+... +.+|+|+++..........++..|+.+|+.
T Consensus 28 ~~v~~~~~~~~~~~~~~~--~~~d~ii~d~~~~~~~~~~~~~~l~~~~--~~~~ii~l~~~~~~~~~~~~~~~g~~~~l~ 103 (202)
T PRK09390 28 FEVRLFESAQAFLDALPG--LRFGCVVTDVRMPGIDGIELLRRLKARG--SPLPVIVMTGHGDVPLAVEAMKLGAVDFIE 103 (202)
T ss_pred CeEEEeCCHHHHHHHhcc--CCCCEEEEeCCCCCCcHHHHHHHHHhcC--CCCCEEEEECCCCHHHHHHHHHcChHHHhh
Confidence 467788899999999887 7899999999999999999999998755 789999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhc
Q 044790 81 KPIRKNELQNLWQHVWRKC 99 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l~~~ 99 (162)
||+..++|...++.++...
T Consensus 104 ~p~~~~~l~~~l~~~~~~~ 122 (202)
T PRK09390 104 KPFEDERLIGAIERALAQA 122 (202)
T ss_pred CCCCHHHHHHHHHHHHHhh
Confidence 9999999999999887764
No 68
>PRK15369 two component system sensor kinase SsrB; Provisional
Probab=99.38 E-value=1.6e-11 Score=89.57 Aligned_cols=92 Identities=16% Similarity=0.311 Sum_probs=83.7
Q ss_pred EEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCC
Q 044790 4 IAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPI 83 (162)
Q Consensus 4 ~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~ 83 (162)
..+.++.++++.+.. ..||+||+|+.+|+++|+++++.++... +.+|+|+++..........++..|+++|+.||+
T Consensus 33 ~~~~~~~~~~~~~~~--~~~dlvl~d~~~~~~~~~~~~~~l~~~~--~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~ 108 (211)
T PRK15369 33 GQVDNGLEVYNACRQ--LEPDIVILDLGLPGMNGLDVIPQLHQRW--PAMNILVLTARQEEHMASRTLAAGALGYVLKKS 108 (211)
T ss_pred EEECCHHHHHHHHHh--cCCCEEEEeCCCCCCCHHHHHHHHHHHC--CCCcEEEEeCCCCHHHHHHHHHhCCCEEEeCCC
Confidence 367899999998887 7899999999999999999999998765 788999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhc
Q 044790 84 RKNELQNLWQHVWRKC 99 (162)
Q Consensus 84 ~~~~L~~~i~~~l~~~ 99 (162)
+..+|...|+.++++.
T Consensus 109 ~~~~l~~~i~~~~~~~ 124 (211)
T PRK15369 109 PQQILLAAIQTVAVGK 124 (211)
T ss_pred CHHHHHHHHHHHHCCC
Confidence 9999999999887653
No 69
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=99.36 E-value=3.4e-11 Score=96.89 Aligned_cols=92 Identities=32% Similarity=0.493 Sum_probs=75.6
Q ss_pred EEE-EEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCC--CHHHHHHHHHcCCceE
Q 044790 2 AVI-AVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHD--SMSIVFKCLSKGAVYF 78 (162)
Q Consensus 2 ~v~-~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~--~~~~~~~a~~~Ga~~~ 78 (162)
++. .+.++.++++.+.. ..||+|++|+.||+++|++++++|++.. + +|+|++++.. ......++++.|+++|
T Consensus 30 ~vv~~a~~~~~al~~~~~--~~~DlVllD~~mp~~dgle~l~~i~~~~--~-~piIvls~~~~~~~~~~~~al~~Ga~d~ 104 (354)
T PRK00742 30 EVVGTAPDGLEAREKIKK--LNPDVITLDVEMPVMDGLDALEKIMRLR--P-TPVVMVSSLTERGAEITLRALELGAVDF 104 (354)
T ss_pred EEEEEECCHHHHHHHHhh--hCCCEEEEeCCCCCCChHHHHHHHHHhC--C-CCEEEEecCCCCCHHHHHHHHhCCCcEE
Confidence 444 78899999999988 7899999999999999999999999865 4 9999999753 3466778999999999
Q ss_pred EeCCCCH---------HHHHHHHHHHHHh
Q 044790 79 LVKPIRK---------NELQNLWQHVWRK 98 (162)
Q Consensus 79 l~KP~~~---------~~L~~~i~~~l~~ 98 (162)
|.||+.. .+|..+++.+.+.
T Consensus 105 l~kP~~~~~~~~~~~~~~l~~~i~~~~~~ 133 (354)
T PRK00742 105 VTKPFLGISLGMDEYKEELAEKVRAAARA 133 (354)
T ss_pred EeCCcccccchHHHHHHHHHHHHHHHhhc
Confidence 9999953 5566666655443
No 70
>PRK13558 bacterio-opsin activator; Provisional
Probab=99.36 E-value=8.5e-12 Score=107.63 Aligned_cols=94 Identities=13% Similarity=0.212 Sum_probs=82.8
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|.|..+.++.++++.+.. ..||+||+|+.||+++|++++++|+... +.+|||+++...+......++..|+.+|+.
T Consensus 32 ~~v~~~~~~~~al~~~~~--~~~Dlvl~d~~lp~~~g~~~l~~l~~~~--~~~piI~lt~~~~~~~~~~al~~Ga~dyl~ 107 (665)
T PRK13558 32 LDVTQIRDFVAARDRVEA--GEIDCVVADHEPDGFDGLALLEAVRQTT--AVPPVVVVPTAGDEAVARRAVDADAAAYVP 107 (665)
T ss_pred cceEeeCCHHHHHHHhhc--cCCCEEEEeccCCCCcHHHHHHHHHhcC--CCCCEEEEECCCCHHHHHHHHhcCcceEEe
Confidence 567889999999999987 7899999999999999999999998755 789999999999999999999999999999
Q ss_pred CCCCHH--HHHHHHHHHHHh
Q 044790 81 KPIRKN--ELQNLWQHVWRK 98 (162)
Q Consensus 81 KP~~~~--~L~~~i~~~l~~ 98 (162)
||.... .+..+++..+..
T Consensus 108 k~~~~~~~~l~~~i~~~~~~ 127 (665)
T PRK13558 108 AVSDDATAAIAERIESAVPE 127 (665)
T ss_pred ccchhHHHHHHHHHHHhhhc
Confidence 997643 666777666654
No 71
>PRK13435 response regulator; Provisional
Probab=99.35 E-value=2.8e-11 Score=84.95 Aligned_cols=92 Identities=16% Similarity=0.206 Sum_probs=77.4
Q ss_pred EEE-EEcCHHHHHHHHHhhCCCccEEEEcCCCC-CCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEE
Q 044790 2 AVI-AVENGLQAWKILEDLMDQIDLVLTEVLMP-CLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFL 79 (162)
Q Consensus 2 ~v~-~a~~~~eal~~l~~~~~~~DlvllD~~mp-~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l 79 (162)
++. .++++.++++.+.. ..||+||+|+.++ +.+|+++++.++.. +.+|+|+++.... ...++..|+++|+
T Consensus 31 ~~~~~~~~~~~~~~~~~~--~~~dliivd~~~~~~~~~~~~~~~l~~~---~~~pii~ls~~~~---~~~~~~~ga~~~l 102 (145)
T PRK13435 31 EVVGIAMSSEQAIALGRR--RQPDVALVDVHLADGPTGVEVARRLSAD---GGVEVVFMTGNPE---RVPHDFAGALGVI 102 (145)
T ss_pred eEEEeeCCHHHHHHHhhh--cCCCEEEEeeecCCCCcHHHHHHHHHhC---CCCCEEEEeCCHH---HHHHHhcCcceeE
Confidence 444 78899999999887 7899999999998 58999999999764 4789999987533 3467789999999
Q ss_pred eCCCCHHHHHHHHHHHHHhccC
Q 044790 80 VKPIRKNELQNLWQHVWRKCHS 101 (162)
Q Consensus 80 ~KP~~~~~L~~~i~~~l~~~~~ 101 (162)
.||++.++|...|++++.+...
T Consensus 103 ~kp~~~~~l~~~i~~~~~~~~~ 124 (145)
T PRK13435 103 AKPYSPRGVARALSYLSARRVG 124 (145)
T ss_pred eCCCCHHHHHHHHHHHHhcCcc
Confidence 9999999999999988766544
No 72
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=99.31 E-value=2.6e-11 Score=88.53 Aligned_cols=92 Identities=20% Similarity=0.312 Sum_probs=78.0
Q ss_pred EEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCC
Q 044790 3 VIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKP 82 (162)
Q Consensus 3 v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP 82 (162)
|.++.++.++.+.+.. .+||+||+|+.+|..|-.+-+.+..+ . ...|||++|+++++..+..++++|+.+||.||
T Consensus 33 Vg~~~~~~~~~~~~~~--~~pDvVildie~p~rd~~e~~~~~~~-~--~~~piv~lt~~s~p~~i~~a~~~Gv~ayivkp 107 (194)
T COG3707 33 VGEAADGLEAVEVCER--LQPDVVILDIEMPRRDIIEALLLASE-N--VARPIVALTAYSDPALIEAAIEAGVMAYIVKP 107 (194)
T ss_pred eeeecccccchhHHHh--cCCCEEEEecCCCCccHHHHHHHhhc-C--CCCCEEEEEccCChHHHHHHHHcCCeEEEecC
Confidence 5688899999999998 89999999999999994443333332 2 67899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhc
Q 044790 83 IRKNELQNLWQHVWRKC 99 (162)
Q Consensus 83 ~~~~~L~~~i~~~l~~~ 99 (162)
++...|+..|.-..+++
T Consensus 108 i~~~rl~p~L~vA~srf 124 (194)
T COG3707 108 LDESRLLPILDVAVSRF 124 (194)
T ss_pred cchhhhhHHHHHHHHHH
Confidence 99999998887665554
No 73
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=99.30 E-value=3.9e-11 Score=89.95 Aligned_cols=95 Identities=14% Similarity=0.097 Sum_probs=79.4
Q ss_pred EEEEcCHHHHHHHHHhhCCCccEEEEcCC--CCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCce-EE
Q 044790 3 VIAVENGLQAWKILEDLMDQIDLVLTEVL--MPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVY-FL 79 (162)
Q Consensus 3 v~~a~~~~eal~~l~~~~~~~DlvllD~~--mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~-~l 79 (162)
|..+.++.++++.+.. .+||+||+|+. +|..+|.+++++|++.. +.++||++|...+..... ++..|+.. |+
T Consensus 30 v~~~~~~~~~~~~~~~--~~pDlvLlDl~~~l~~~~g~~~i~~i~~~~--p~~~iivlt~~~~~~~~~-~~~~~~~~~~~ 104 (207)
T PRK15411 30 INDIETVDDLAIACDS--LRPSVVFINEDCFIHDASNSQRIKQIINQH--PNTLFIVFMAIANIHFDE-YLLVRKNLLIS 104 (207)
T ss_pred EEecCCHHHHHHHHhc--cCCCEEEEeCcccCCCCChHHHHHHHHHHC--CCCeEEEEECCCchhHHH-HHHHHhhceee
Confidence 4578999999999887 78999999966 88889999999998865 789999999987776543 55555554 88
Q ss_pred eCCCCHHHHHHHHHHHHHhccCC
Q 044790 80 VKPIRKNELQNLWQHVWRKCHSS 102 (162)
Q Consensus 80 ~KP~~~~~L~~~i~~~l~~~~~~ 102 (162)
.|+.+.++|...|+.++.+..+.
T Consensus 105 ~K~~~~~~L~~aI~~v~~g~~~~ 127 (207)
T PRK15411 105 SKSIKPESLDDLLGDILKKETTI 127 (207)
T ss_pred eccCCHHHHHHHHHHHHcCCccc
Confidence 99999999999999998876543
No 74
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=99.25 E-value=1.5e-10 Score=74.18 Aligned_cols=91 Identities=30% Similarity=0.566 Sum_probs=80.1
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
+.+..+.+..+++..+.. ..+|++|+|..++..+|+++++.++... +.+|+++++..........++..|+.+|+.
T Consensus 22 ~~~~~~~~~~~~~~~~~~--~~~~~ii~~~~~~~~~~~~~~~~l~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~ 97 (113)
T cd00156 22 YEVVEAEDGEEALALLAE--EKPDLILLDIMMPGMDGLELLRRIRKRG--PDIPIIFLTAHGDDEDAVEALKAGADDYLT 97 (113)
T ss_pred ceEEEecCHHHHHHHHHh--CCCCEEEEecCCCCCchHHHHHHHHHhC--CCCCEEEEEecccHHHHHHHHHcChhhHcc
Confidence 356678889999998887 7899999999999999999999998763 678999999877778888899999999999
Q ss_pred CCCCHHHHHHHHHHH
Q 044790 81 KPIRKNELQNLWQHV 95 (162)
Q Consensus 81 KP~~~~~L~~~i~~~ 95 (162)
||+....|...++.+
T Consensus 98 ~p~~~~~l~~~l~~~ 112 (113)
T cd00156 98 KPFSPEELLARIRAL 112 (113)
T ss_pred CCCCHHHHHHHHHhh
Confidence 999999999888753
No 75
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.25 E-value=1.8e-10 Score=91.75 Aligned_cols=78 Identities=35% Similarity=0.510 Sum_probs=69.2
Q ss_pred EEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCC--HHHHHHHHHcCCceEE
Q 044790 2 AVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDS--MSIVFKCLSKGAVYFL 79 (162)
Q Consensus 2 ~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~--~~~~~~a~~~Ga~~~l 79 (162)
-|..+.|+.+|++.+.+ ..||+|.||+.||.|||+++++.|... ..+||||+++... .+...+++++|+.||+
T Consensus 29 vv~~a~ng~~a~~~~~~--~~PDVi~ld~emp~mdgl~~l~~im~~---~p~pVimvsslt~~g~~~t~~al~~gAvD~i 103 (350)
T COG2201 29 VVGTARNGREAIDKVKK--LKPDVITLDVEMPVMDGLEALRKIMRL---RPLPVIMVSSLTEEGAEATLEALELGAVDFI 103 (350)
T ss_pred EEEecCCHHHHHHHHHh--cCCCEEEEecccccccHHHHHHHHhcC---CCCcEEEEeccccccHHHHHHHHhcCcceee
Confidence 35688999999999999 899999999999999999999999875 5899999997543 5667889999999999
Q ss_pred eCCCC
Q 044790 80 VKPIR 84 (162)
Q Consensus 80 ~KP~~ 84 (162)
.||..
T Consensus 104 ~kp~~ 108 (350)
T COG2201 104 AKPSG 108 (350)
T ss_pred cCCCc
Confidence 99974
No 76
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=99.24 E-value=1.6e-10 Score=102.29 Aligned_cols=94 Identities=16% Similarity=0.154 Sum_probs=84.1
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|+|..+.++.++++.+.....+||+||+ .||+++|+++++.|+... +.+|||+++..........++..| ++||.
T Consensus 722 ~~v~~~~s~~~al~~l~~~~~~~DlVll--~~~~~~g~~l~~~l~~~~--~~ipIIvls~~~~~~~~~~~~~~G-~d~L~ 796 (828)
T PRK13837 722 YEPVGFSTLAAAIAWISKGPERFDLVLV--DDRLLDEEQAAAALHAAA--PTLPIILGGNSKTMALSPDLLASV-AEILA 796 (828)
T ss_pred CEEEEeCCHHHHHHHHHhCCCCceEEEE--CCCCCCHHHHHHHHHhhC--CCCCEEEEeCCCchhhhhhHhhcc-CcEEe
Confidence 6788999999999999762134899999 799999999999998765 789999999999988899999999 99999
Q ss_pred CCCCHHHHHHHHHHHHHhc
Q 044790 81 KPIRKNELQNLWQHVWRKC 99 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l~~~ 99 (162)
||++..+|..+|+.+++..
T Consensus 797 KP~~~~~L~~~l~~~l~~~ 815 (828)
T PRK13837 797 KPISSRTLAYALRTALATA 815 (828)
T ss_pred CCCCHHHHHHHHHHHHccc
Confidence 9999999999999988654
No 77
>PRK09191 two-component response regulator; Provisional
Probab=99.18 E-value=5.4e-10 Score=85.58 Aligned_cols=91 Identities=14% Similarity=0.264 Sum_probs=75.8
Q ss_pred EEE-EEcCHHHHHHHHHhhCCCccEEEEcCCCCC-CCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEE
Q 044790 2 AVI-AVENGLQAWKILEDLMDQIDLVLTEVLMPC-LSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFL 79 (162)
Q Consensus 2 ~v~-~a~~~~eal~~l~~~~~~~DlvllD~~mp~-~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l 79 (162)
.+. .+.++.++++.+.. ..||+||+|+.||+ ++|+++++.++... .+|||+++....... .+...++.+|+
T Consensus 163 ~~~~~~~~~~~~l~~l~~--~~~dlvi~d~~~~~~~~g~e~l~~l~~~~---~~pii~ls~~~~~~~--~~~~~~~~~~l 235 (261)
T PRK09191 163 RVTGIARTRAEAVALAKK--TRPGLILADIQLADGSSGIDAVNDILKTF---DVPVIFITAFPERLL--TGERPEPAFLI 235 (261)
T ss_pred EEEEEECCHHHHHHHHhc--cCCCEEEEecCCCCCCCHHHHHHHHHHhC---CCCEEEEeCCCcHHH--HHHhcccCceE
Confidence 445 67899999999988 78999999999995 89999999998753 789999998765443 34456788999
Q ss_pred eCCCCHHHHHHHHHHHHHhc
Q 044790 80 VKPIRKNELQNLWQHVWRKC 99 (162)
Q Consensus 80 ~KP~~~~~L~~~i~~~l~~~ 99 (162)
.||++.++|...|++++...
T Consensus 236 ~kP~~~~~l~~~i~~~~~~~ 255 (261)
T PRK09191 236 TKPFQPDTVKAAISQALFFQ 255 (261)
T ss_pred ECCCCHHHHHHHHHHHHhcc
Confidence 99999999999999876653
No 78
>PRK13557 histidine kinase; Provisional
Probab=99.13 E-value=7.6e-10 Score=92.39 Aligned_cols=96 Identities=25% Similarity=0.367 Sum_probs=84.6
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCC-CCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEE
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPC-LSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFL 79 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~-~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l 79 (162)
|.+..+.++.++++.+... ..||+||+|..+|+ ++|+++++.|+... +.+|+|+++..........++..|+.+|+
T Consensus 440 ~~v~~~~~~~~~~~~~~~~-~~~d~vi~d~~~~~~~~~~~~~~~l~~~~--~~~~ii~~~~~~~~~~~~~~~~~g~~~~l 516 (540)
T PRK13557 440 YRTLVASNGREALEILDSH-PEVDLLFTDLIMPGGMNGVMLAREARRRQ--PKIKVLLTTGYAEASIERTDAGGSEFDIL 516 (540)
T ss_pred CeEEEeCCHHHHHHHHhcC-CCceEEEEeccCCCCCCHHHHHHHHHHhC--CCCcEEEEcCCCchhhhhhhccccCCcee
Confidence 5678899999999998751 36999999999997 99999999999865 78999999998888888888999999999
Q ss_pred eCCCCHHHHHHHHHHHHHhc
Q 044790 80 VKPIRKNELQNLWQHVWRKC 99 (162)
Q Consensus 80 ~KP~~~~~L~~~i~~~l~~~ 99 (162)
.||++.++|...|+.++...
T Consensus 517 ~kp~~~~~l~~~l~~~~~~~ 536 (540)
T PRK13557 517 NKPYRRAELARRVRMVLDGP 536 (540)
T ss_pred eCCCCHHHHHHHHHHHhcCC
Confidence 99999999999999876643
No 79
>COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]
Probab=99.00 E-value=1.6e-09 Score=83.20 Aligned_cols=88 Identities=25% Similarity=0.438 Sum_probs=78.8
Q ss_pred EEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCC
Q 044790 5 AVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIR 84 (162)
Q Consensus 5 ~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~ 84 (162)
.+.++.++++.++. ..+|++++|+.||+++|+++.+.|+... +..+|+++|++ .++...+++..+.+||.||+.
T Consensus 32 ~~~~~~~~~~~~~~--~~~~~~fldI~~~~~~G~ela~~i~~~~--~~~~Ivfvt~~--~~~a~~afev~a~d~i~kp~~ 105 (244)
T COG3279 32 EAENGEEALQLLQG--LRPDLVFLDIAMPDINGIELAARIRKGD--PRPAIVFVTAH--DEYAVAAFEVEALDYLLKPIS 105 (244)
T ss_pred eeccchhhHHHHhc--cCCCeEEEeeccCccchHHHHHHhcccC--CCCeEEEEEeh--HHHHHHHHhHHHHhhhcCcch
Confidence 67899999999998 7999999999999999999999999864 77889999986 566788889999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 044790 85 KNELQNLWQHVWRK 98 (162)
Q Consensus 85 ~~~L~~~i~~~l~~ 98 (162)
.+.|...+....+.
T Consensus 106 ~~~l~~~l~~~~~~ 119 (244)
T COG3279 106 EERLAKTLERLRRY 119 (244)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999876554
No 80
>PRK15029 arginine decarboxylase; Provisional
Probab=98.91 E-value=8.7e-09 Score=89.86 Aligned_cols=96 Identities=15% Similarity=0.158 Sum_probs=72.8
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHH----HHHHHHHccCCCCCCcEEEEecCCC-HHHHHHHHHcCC
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGI----GLLRKIMNHKTCKNIPVIMMSSHDS-MSIVFKCLSKGA 75 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~----~~~~~ir~~~~~~~~piI~lt~~~~-~~~~~~a~~~Ga 75 (162)
|+|..+.++.+|++.+... ..||+||+|+.||+++|+ +++++||... +.+|||++|+... .+.+-.-.---+
T Consensus 33 ~eV~~a~s~~dAl~~l~~~-~~~DlVLLD~~LPd~dG~~~~~ell~~IR~~~--~~iPIIlLTar~~~~~~~~~~~~~~~ 109 (755)
T PRK15029 33 VTVIKSTSFDDGFAILSSN-EAIDCLMFSYQMEHPDEHQNVRQLIGKLHERQ--QNVPVFLLGDREKALAAMDRDLLELV 109 (755)
T ss_pred CEEEEECCHHHHHHHHHhc-CCCcEEEEECCCCCCccchhHHHHHHHHHhhC--CCCCEEEEEcCCcccccCCHHHHHhh
Confidence 6899999999999999761 379999999999999997 8999999754 6899999999885 222222233457
Q ss_pred ceEEeCCCCHHHHH-HHHHHHHHhc
Q 044790 76 VYFLVKPIRKNELQ-NLWQHVWRKC 99 (162)
Q Consensus 76 ~~~l~KP~~~~~L~-~~i~~~l~~~ 99 (162)
++|+.+-.+..++. .+|...++++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~y 134 (755)
T PRK15029 110 DEFAWILEDTADFIAGRAVAAMTRY 134 (755)
T ss_pred heEEEecCCCHHHHHHHHHHHHHHH
Confidence 89999986655554 4455555544
No 81
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=98.90 E-value=2e-09 Score=88.18 Aligned_cols=94 Identities=29% Similarity=0.390 Sum_probs=83.5
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|+|..+..|..++..+.. +++|.+++|++||+++|+++++.+++... + ++++|.........+.+++|+++|++
T Consensus 13 ~~v~~a~~g~~~l~~~~~--~~~~~~lld~~m~~~~~~~~~~~lk~~~~---~-~v~~t~~~~~~~~~~~~~~~~~~~l~ 86 (435)
T COG3706 13 KEVATAKKGLIALAILLD--HKPDYKLLDVMMPGMDGFELCRRLKAEPA---T-VVMVTALDDSAPRVRGLKAGADDFLT 86 (435)
T ss_pred hhhhhccchHHHHHHHhc--CCCCeEEeecccCCcCchhHHHHHhcCCc---c-eEEEEecCCCCcchhHHhhhhhhhcc
Confidence 356678899999999998 89999999999999999999999998752 2 89999988888899999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcc
Q 044790 81 KPIRKNELQNLWQHVWRKCH 100 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l~~~~ 100 (162)
||.+...+..+...+.+...
T Consensus 87 ~~~~~~~~~~r~~~l~~~k~ 106 (435)
T COG3706 87 KPVNDSQLFLRAKSLVRLKC 106 (435)
T ss_pred CCCChHHHHHhhhhhccchh
Confidence 99999999999988766543
No 82
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=97.91 E-value=0.0001 Score=65.89 Aligned_cols=89 Identities=15% Similarity=0.115 Sum_probs=67.9
Q ss_pred EEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeC
Q 044790 2 AVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVK 81 (162)
Q Consensus 2 ~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~K 81 (162)
.|..+.++.+ +.. ..||++|+|+.||+..+...+............++|+++..........+.+.|+++|+.|
T Consensus 562 ~v~~~~~~~~----l~~--~~~d~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~l~k 635 (919)
T PRK11107 562 EVTYSPTLSQ----LPE--AHYDILLLGLPVTFREPLTMLHERLAKAKSMTDFLILALPCHEQVLAEQLKQDGADACLSK 635 (919)
T ss_pred EEEEcCCHHH----hcc--CCCCEEEecccCCCCCCHHHHHHHHHhhhhcCCcEEEEeCCcchhhHHHHhhCCCceEECC
Confidence 4455555555 344 6899999999999888776654443322224556888888888888889999999999999
Q ss_pred CCCHHHHHHHHHHHH
Q 044790 82 PIRKNELQNLWQHVW 96 (162)
Q Consensus 82 P~~~~~L~~~i~~~l 96 (162)
|+...+|...+....
T Consensus 636 p~~~~~l~~~l~~~~ 650 (919)
T PRK11107 636 PLSHTRLLPALLEPC 650 (919)
T ss_pred CCCHHHHHHHHHHhh
Confidence 999999999988654
No 83
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=97.60 E-value=0.00051 Score=46.76 Aligned_cols=94 Identities=17% Similarity=0.110 Sum_probs=71.8
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCC--CCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceE
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPC--LSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYF 78 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~--~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~ 78 (162)
|+|+.+.+.++++..++.. ..+..|+++|. +. ....++++.||..+ ..+||.+++.+...+.+-...-..+++|
T Consensus 18 ~~vv~~~~~dd~~~~i~~~-~~i~avvi~~d-~~~~~~~~~ll~~i~~~~--~~iPVFl~~~~~~~~~l~~~~l~~v~~~ 93 (115)
T PF03709_consen 18 REVVDADSTDDALAIIESF-TDIAAVVISWD-GEEEDEAQELLDKIRERN--FGIPVFLLAERDTTEDLPAEVLGEVDGF 93 (115)
T ss_dssp TEEEEESSHHHHHHHHHCT-TTEEEEEEECH-HHHHHHHHHHHHHHHHHS--TT-EEEEEESCCHHHCCCHHHHCCESEE
T ss_pred CEEEEeCChHHHHHHHHhC-CCeeEEEEEcc-cccchhHHHHHHHHHHhC--CCCCEEEEecCCCcccCCHHHHhhccEE
Confidence 6799999999999999973 56999999986 11 22356889999887 8999999998775555555666779999
Q ss_pred EeCC-CCHHHHHHHHHHHHHh
Q 044790 79 LVKP-IRKNELQNLWQHVWRK 98 (162)
Q Consensus 79 l~KP-~~~~~L~~~i~~~l~~ 98 (162)
+... .+++.+..+|.....+
T Consensus 94 i~l~~~t~~fia~rI~~Aa~~ 114 (115)
T PF03709_consen 94 IWLFEDTAEFIARRIEAAARR 114 (115)
T ss_dssp EETTTTTHHHHHHHHHHHHHH
T ss_pred EEecCCCHHHHHHHHHHHHHh
Confidence 9987 4556666777766654
No 84
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=96.97 E-value=0.034 Score=38.06 Aligned_cols=83 Identities=5% Similarity=-0.101 Sum_probs=61.0
Q ss_pred cCHHHHHHHHHhhCCCccEEEEcCCCCCCCH--HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCC
Q 044790 7 ENGLQAWKILEDLMDQIDLVLTEVLMPCLSG--IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIR 84 (162)
Q Consensus 7 ~~~~eal~~l~~~~~~~DlvllD~~mp~~~g--~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~ 84 (162)
...++.++.+.+ ..+|+|.+...++..-. -++++.+++.. +....+++......+...++.++|+++|+..--.
T Consensus 37 vp~e~~~~~a~~--~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~--~~~i~i~~GG~~~~~~~~~~~~~G~d~~~~~~~~ 112 (122)
T cd02071 37 QTPEEIVEAAIQ--EDVDVIGLSSLSGGHMTLFPEVIELLRELG--AGDILVVGGGIIPPEDYELLKEMGVAEIFGPGTS 112 (122)
T ss_pred CCHHHHHHHHHH--cCCCEEEEcccchhhHHHHHHHHHHHHhcC--CCCCEEEEECCCCHHHHHHHHHCCCCEEECCCCC
Confidence 356788888888 89999999988754322 34566777653 3344555665566677788889999999999988
Q ss_pred HHHHHHHHH
Q 044790 85 KNELQNLWQ 93 (162)
Q Consensus 85 ~~~L~~~i~ 93 (162)
.++....|+
T Consensus 113 ~~~~~~~~~ 121 (122)
T cd02071 113 IEEIIDKIR 121 (122)
T ss_pred HHHHHHHHh
Confidence 888877764
No 85
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=96.95 E-value=0.036 Score=38.68 Aligned_cols=89 Identities=9% Similarity=-0.042 Sum_probs=63.8
Q ss_pred EcCHHHHHHHHHhhCCCccEEEEcCCCCC-CCH-HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCC
Q 044790 6 VENGLQAWKILEDLMDQIDLVLTEVLMPC-LSG-IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPI 83 (162)
Q Consensus 6 a~~~~eal~~l~~~~~~~DlvllD~~mp~-~~g-~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~ 83 (162)
..+.++.++...+ ..+|+|.+...+.. +.. -++++.|++.. .....|++.+....+......++|+++|+..--
T Consensus 39 ~~s~e~~v~aa~e--~~adii~iSsl~~~~~~~~~~~~~~L~~~g--~~~i~vivGG~~~~~~~~~l~~~Gvd~~~~~gt 114 (132)
T TIGR00640 39 FQTPEEIARQAVE--ADVHVVGVSSLAGGHLTLVPALRKELDKLG--RPDILVVVGGVIPPQDFDELKEMGVAEIFGPGT 114 (132)
T ss_pred CCCHHHHHHHHHH--cCCCEEEEcCchhhhHHHHHHHHHHHHhcC--CCCCEEEEeCCCChHhHHHHHHCCCCEEECCCC
Confidence 3467888888888 89999999877743 222 33566676654 323345556545566677888999999999989
Q ss_pred CHHHHHHHHHHHHHh
Q 044790 84 RKNELQNLWQHVWRK 98 (162)
Q Consensus 84 ~~~~L~~~i~~~l~~ 98 (162)
+..++...|.+.+..
T Consensus 115 ~~~~i~~~l~~~~~~ 129 (132)
T TIGR00640 115 PIPESAIFLLKKLRK 129 (132)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999998876543
No 86
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=96.29 E-value=0.17 Score=35.50 Aligned_cols=87 Identities=11% Similarity=-0.007 Sum_probs=64.4
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCCCCCC--HHHHHHHHHccCCCCCCcEEEEecCC------CHHHHHHHHHcCCceEE
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLMPCLS--GIGLLRKIMNHKTCKNIPVIMMSSHD------SMSIVFKCLSKGAVYFL 79 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~mp~~~--g~~~~~~ir~~~~~~~~piI~lt~~~------~~~~~~~a~~~Ga~~~l 79 (162)
..++.++.+.+ ..+|+|.+...+.... --++++.|++.. .+.++|+ +.+.. ..+...++.+.|++.++
T Consensus 42 p~e~i~~~a~~--~~~d~V~lS~~~~~~~~~~~~~~~~L~~~~-~~~~~i~-vGG~~~~~~~~~~~~~~~l~~~G~~~vf 117 (137)
T PRK02261 42 SQEEFIDAAIE--TDADAILVSSLYGHGEIDCRGLREKCIEAG-LGDILLY-VGGNLVVGKHDFEEVEKKFKEMGFDRVF 117 (137)
T ss_pred CHHHHHHHHHH--cCCCEEEEcCccccCHHHHHHHHHHHHhcC-CCCCeEE-EECCCCCCccChHHHHHHHHHcCCCEEE
Confidence 56788888888 8999999999887532 245677777653 2455544 44432 45556788899999999
Q ss_pred eCCCCHHHHHHHHHHHHHh
Q 044790 80 VKPIRKNELQNLWQHVWRK 98 (162)
Q Consensus 80 ~KP~~~~~L~~~i~~~l~~ 98 (162)
...-+.+++...|++.+..
T Consensus 118 ~~~~~~~~i~~~l~~~~~~ 136 (137)
T PRK02261 118 PPGTDPEEAIDDLKKDLNQ 136 (137)
T ss_pred CcCCCHHHHHHHHHHHhcc
Confidence 9999999999999987653
No 87
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=96.05 E-value=0.039 Score=43.95 Aligned_cols=83 Identities=14% Similarity=0.030 Sum_probs=54.0
Q ss_pred EEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEE-EEecCCCHHHHHHHHHcCCceEEe
Q 044790 2 AVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVI-MMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 2 ~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI-~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
+++.+.+..++-... ..-.+|++|..+-. .++... .+ +...++ ++....+.+....++..|+.+||.
T Consensus 3 ~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~----~~~~~~--~p--~~~~vv~v~~~~~~~~~~~~a~~~Ga~~~l~ 70 (322)
T TIGR03815 3 ELDVAPDPEAARRAW----ARAPLVLVDADMAE----ACAAAG--LP--RRRRVVLVGGGEPGGALWRAAAAVGAEHVAV 70 (322)
T ss_pred ceEEccCchhhhhcc----ccCCeEEECchhhh----HHHhcc--CC--CCCCEEEEeCCCCCHHHHHHHHHhChhheee
Confidence 355566655543322 23688999854411 111121 22 223355 444456788999999999999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 044790 81 KPIRKNELQNLWQHVW 96 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l 96 (162)
+|++..+|...|.++.
T Consensus 71 ~P~~~~~l~~~l~~~~ 86 (322)
T TIGR03815 71 LPEAEGWLVELLADLD 86 (322)
T ss_pred CCCCHHHHHHHHHhhc
Confidence 9999999999998763
No 88
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=96.00 E-value=0.24 Score=36.68 Aligned_cols=87 Identities=18% Similarity=0.159 Sum_probs=60.5
Q ss_pred EEcCHHHHHHHHHhhCCCccEEEEcCCCCCC--------CHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCc
Q 044790 5 AVENGLQAWKILEDLMDQIDLVLTEVLMPCL--------SGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAV 76 (162)
Q Consensus 5 ~a~~~~eal~~l~~~~~~~DlvllD~~mp~~--------~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~ 76 (162)
.+.+..++.+... ..+|+|.+.-..|.. .|++.++++++.. +.+||++..+- ..+.+..++..|++
T Consensus 110 ~~~t~~e~~~a~~---~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~v~a~GGI-~~~~i~~~~~~Ga~ 183 (212)
T PRK00043 110 STHTLEEAAAALA---AGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAV--GDIPIVAIGGI-TPENAPEVLEAGAD 183 (212)
T ss_pred eCCCHHHHHHHhH---cCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhc--CCCCEEEECCc-CHHHHHHHHHcCCC
Confidence 4456667766654 478999987555532 3588899987753 45899888776 57888899999999
Q ss_pred eEEe-----CCCCHHHHHHHHHHHHH
Q 044790 77 YFLV-----KPIRKNELQNLWQHVWR 97 (162)
Q Consensus 77 ~~l~-----KP~~~~~L~~~i~~~l~ 97 (162)
++.. +.-++.+....+...+.
T Consensus 184 gv~~gs~i~~~~d~~~~~~~l~~~~~ 209 (212)
T PRK00043 184 GVAVVSAITGAEDPEAAARALLAAFR 209 (212)
T ss_pred EEEEeHHhhcCCCHHHHHHHHHHHHh
Confidence 9974 44455555555555443
No 89
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=95.93 E-value=0.31 Score=34.13 Aligned_cols=88 Identities=9% Similarity=-0.038 Sum_probs=62.3
Q ss_pred EcCHHHHHHHHHhhCCCccEEEEcCCCCCCC--HHHHHHHHHccCCCCCCcEEEEecCC---CHH---HHHHHHHcCCce
Q 044790 6 VENGLQAWKILEDLMDQIDLVLTEVLMPCLS--GIGLLRKIMNHKTCKNIPVIMMSSHD---SMS---IVFKCLSKGAVY 77 (162)
Q Consensus 6 a~~~~eal~~l~~~~~~~DlvllD~~mp~~~--g~~~~~~ir~~~~~~~~piI~lt~~~---~~~---~~~~a~~~Ga~~ 77 (162)
....++.++...+ ..+|+|.+...|...- --++.+.|++.. ..-+++++.... ..+ ...++.++|++.
T Consensus 38 ~v~~e~~v~aa~~--~~adiVglS~l~~~~~~~~~~~~~~l~~~g--l~~~~vivGG~~vi~~~d~~~~~~~l~~~Gv~~ 113 (134)
T TIGR01501 38 LSPQEEFIKAAIE--TKADAILVSSLYGHGEIDCKGLRQKCDEAG--LEGILLYVGGNLVVGKQDFPDVEKRFKEMGFDR 113 (134)
T ss_pred CCCHHHHHHHHHH--cCCCEEEEecccccCHHHHHHHHHHHHHCC--CCCCEEEecCCcCcChhhhHHHHHHHHHcCCCE
Confidence 3467888888888 8999999988875432 234566777654 223456666631 222 234678899999
Q ss_pred EEeCCCCHHHHHHHHHHHHH
Q 044790 78 FLVKPIRKNELQNLWQHVWR 97 (162)
Q Consensus 78 ~l~KP~~~~~L~~~i~~~l~ 97 (162)
.+...-..+++...|++.|+
T Consensus 114 vF~pgt~~~~iv~~l~~~~~ 133 (134)
T TIGR01501 114 VFAPGTPPEVVIADLKKDLN 133 (134)
T ss_pred EECcCCCHHHHHHHHHHHhc
Confidence 99998899999999988764
No 90
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=95.20 E-value=0.39 Score=37.07 Aligned_cols=84 Identities=12% Similarity=0.010 Sum_probs=59.2
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe-CCCCHH
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV-KPIRKN 86 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~-KP~~~~ 86 (162)
..-...+.+.. ..+|.|++|++....+--++...|+.... ....+++=....+...+.++++.|+++++. |--+.+
T Consensus 21 ~~p~~~e~~~~--~g~D~v~iDlEH~~~~~~~~~~~~~a~~~-~g~~~~VRv~~~~~~~i~~~Ld~Ga~gIivP~v~s~e 97 (249)
T TIGR02311 21 ADPYAAEICAG--AGFDWLLIDGEHAPNDVRTILSQLQALAP-YPSSPVVRPAIGDPVLIKQLLDIGAQTLLVPMIETAE 97 (249)
T ss_pred CCcHHHHHHHh--cCCCEEEEeccCCCCCHHHHHHHHHHHHh-cCCCcEEECCCCCHHHHHHHhCCCCCEEEecCcCCHH
Confidence 33456677776 68999999999988888777777776432 233444445556777899999999999955 455666
Q ss_pred HHHHHHHH
Q 044790 87 ELQNLWQH 94 (162)
Q Consensus 87 ~L~~~i~~ 94 (162)
+....++.
T Consensus 98 ~a~~~v~~ 105 (249)
T TIGR02311 98 QAEAAVAA 105 (249)
T ss_pred HHHHHHHH
Confidence 66555554
No 91
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=95.12 E-value=0.36 Score=37.31 Aligned_cols=81 Identities=14% Similarity=0.086 Sum_probs=59.5
Q ss_pred HHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHH
Q 044790 10 LQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQ 89 (162)
Q Consensus 10 ~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~ 89 (162)
-.+.+.+.. ..||.|++|.+...++--++...++.... ..++.++=....+...+.++++.|+++++..-+...+=.
T Consensus 23 p~~~e~~a~--~G~D~v~iD~EHg~~~~~~~~~~~~a~~~-~g~~~~VRvp~~~~~~i~r~LD~Ga~gIivP~v~taeea 99 (249)
T TIGR03239 23 PITTEVLGL--AGFDWLLLDGEHAPNDVLTFIPQLMALKG-SASAPVVRPPWNEPVIIKRLLDIGFYNFLIPFVESAEEA 99 (249)
T ss_pred cHHHHHHHh--cCCCEEEEecccCCCCHHHHHHHHHHHhh-cCCCcEEECCCCCHHHHHHHhcCCCCEEEecCcCCHHHH
Confidence 456677776 78999999999998888787777776432 344445555667889999999999999988776554444
Q ss_pred HHHH
Q 044790 90 NLWQ 93 (162)
Q Consensus 90 ~~i~ 93 (162)
+.+.
T Consensus 100 ~~~v 103 (249)
T TIGR03239 100 ERAV 103 (249)
T ss_pred HHHH
Confidence 4433
No 92
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=94.97 E-value=0.43 Score=37.04 Aligned_cols=81 Identities=12% Similarity=0.084 Sum_probs=59.3
Q ss_pred HHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCH-HHH
Q 044790 10 LQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRK-NEL 88 (162)
Q Consensus 10 ~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~-~~L 88 (162)
-.+.+.+.. ..||.|++|.+....+--++...|+.... ..++.++=....+...+.++++.|+++++..-+.. ++.
T Consensus 30 p~~~e~~a~--~G~D~v~iD~EHg~~~~~~~~~~i~a~~~-~g~~~lVRvp~~~~~~i~r~LD~Ga~giivP~v~tae~a 106 (256)
T PRK10558 30 PITTEVLGL--AGFDWLVLDGEHAPNDVSTFIPQLMALKG-SASAPVVRVPTNEPVIIKRLLDIGFYNFLIPFVETAEEA 106 (256)
T ss_pred cHHHHHHHh--cCCCEEEEccccCCCCHHHHHHHHHHHhh-cCCCcEEECCCCCHHHHHHHhCCCCCeeeecCcCCHHHH
Confidence 456677777 78999999999998888887777766433 34454555556688999999999999998776555 444
Q ss_pred HHHHH
Q 044790 89 QNLWQ 93 (162)
Q Consensus 89 ~~~i~ 93 (162)
...++
T Consensus 107 ~~~v~ 111 (256)
T PRK10558 107 RRAVA 111 (256)
T ss_pred HHHHH
Confidence 44443
No 93
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=94.93 E-value=0.44 Score=37.24 Aligned_cols=82 Identities=12% Similarity=0.041 Sum_probs=60.1
Q ss_pred HHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHH
Q 044790 10 LQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQ 89 (162)
Q Consensus 10 ~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~ 89 (162)
-.+.+.+.. ..||.|++|.+....+--++...|+.... ..++.++=....+...+.++++.|+.+++..-+...+=.
T Consensus 29 p~~~E~~a~--~GfD~v~iD~EHg~~~~~~l~~~i~a~~~-~g~~~lVRvp~~~~~~i~r~LD~GA~GIivP~V~saeeA 105 (267)
T PRK10128 29 SYMAEIAAT--SGYDWLLIDGEHAPNTIQDLYHQLQAIAP-YASQPVIRPVEGSKPLIKQVLDIGAQTLLIPMVDTAEQA 105 (267)
T ss_pred cHHHHHHHH--cCCCEEEEccccCCCCHHHHHHHHHHHHh-cCCCeEEECCCCCHHHHHHHhCCCCCeeEecCcCCHHHH
Confidence 355677776 67999999999988888777777766433 334445555567889999999999999998887665544
Q ss_pred HHHHH
Q 044790 90 NLWQH 94 (162)
Q Consensus 90 ~~i~~ 94 (162)
+.+.+
T Consensus 106 ~~~V~ 110 (267)
T PRK10128 106 RQVVS 110 (267)
T ss_pred HHHHH
Confidence 44443
No 94
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=94.32 E-value=0.41 Score=32.11 Aligned_cols=67 Identities=18% Similarity=0.245 Sum_probs=46.4
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHH
Q 044790 21 DQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHV 95 (162)
Q Consensus 21 ~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~ 95 (162)
...+.+++-..-.. ...+.++.+.+.. +++||+++......... ..+-+-|..|+++.+|...|++.
T Consensus 41 ~~~~~~~v~~g~~~-~~~~~l~~l~~~~--~~~Pvlllg~~~~~~~~-----~nvvg~Le~Pl~Y~qLt~~L~~c 107 (109)
T PF06490_consen 41 SPWEACAVILGSCS-KLAELLKELLKWA--PHIPVLLLGEHDSPEEL-----PNVVGELEEPLNYPQLTDALHRC 107 (109)
T ss_pred cCCcEEEEEecCch-hHHHHHHHHHhhC--CCCCEEEECCCCccccc-----cCeeEecCCCCCHHHHHHHHHHh
Confidence 45555544433222 4567778887765 89999999987665111 12677799999999999999864
No 95
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=94.20 E-value=0.47 Score=31.93 Aligned_cols=70 Identities=9% Similarity=0.014 Sum_probs=48.4
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCCCCC--CHHHHHHHHHccCCCC-CCcEEEEecCCCHHHHHHHHHcCCceEEeCC
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLMPCL--SGIGLLRKIMNHKTCK-NIPVIMMSSHDSMSIVFKCLSKGAVYFLVKP 82 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~mp~~--~g~~~~~~ir~~~~~~-~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP 82 (162)
..++.++.+.+ ..||+|.+...+... ...++++.+|+.. + .++|+ +.+.........+.+.|+|.|+...
T Consensus 38 ~~~~l~~~~~~--~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~--~~~~~i~-vGG~~~~~~~~~~~~~G~D~~~~~~ 110 (119)
T cd02067 38 PPEEIVEAAKE--EDADAIGLSGLLTTHMTLMKEVIEELKEAG--LDDIPVL-VGGAIVTRDFKFLKEIGVDAYFGPA 110 (119)
T ss_pred CHHHHHHHHHH--cCCCEEEEeccccccHHHHHHHHHHHHHcC--CCCCeEE-EECCCCChhHHHHHHcCCeEEECCH
Confidence 56677888888 899999998876442 3456778888764 4 56555 5544444444577889998887643
No 96
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=93.93 E-value=1.5 Score=33.79 Aligned_cols=84 Identities=21% Similarity=0.232 Sum_probs=60.8
Q ss_pred EEcCHHHHHHHHHhhCCCccEEEEcCCCC---------CCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCC
Q 044790 5 AVENGLQAWKILEDLMDQIDLVLTEVLMP---------CLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGA 75 (162)
Q Consensus 5 ~a~~~~eal~~l~~~~~~~DlvllD~~mp---------~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga 75 (162)
++.|...|-++ .. -.+++| || +..-.++++.|++. ..+|||+=..-..++++.++++.|+
T Consensus 130 c~dd~~~ar~l-~~--~G~~~v-----mPlg~pIGsg~Gi~~~~~I~~I~e~---~~vpVI~egGI~tpeda~~AmelGA 198 (248)
T cd04728 130 CTDDPVLAKRL-ED--AGCAAV-----MPLGSPIGSGQGLLNPYNLRIIIER---ADVPVIVDAGIGTPSDAAQAMELGA 198 (248)
T ss_pred eCCCHHHHHHH-HH--cCCCEe-----CCCCcCCCCCCCCCCHHHHHHHHHh---CCCcEEEeCCCCCHHHHHHHHHcCC
Confidence 55566665444 33 467777 55 22226888888875 4799999888899999999999999
Q ss_pred ceEEe-----CCCCHHHHHHHHHHHHHhc
Q 044790 76 VYFLV-----KPIRKNELQNLWQHVWRKC 99 (162)
Q Consensus 76 ~~~l~-----KP~~~~~L~~~i~~~l~~~ 99 (162)
++.+. |.-++..+..++...+...
T Consensus 199 dgVlV~SAIt~a~dP~~ma~af~~Av~aG 227 (248)
T cd04728 199 DAVLLNTAIAKAKDPVAMARAFKLAVEAG 227 (248)
T ss_pred CEEEEChHhcCCCCHHHHHHHHHHHHHHH
Confidence 99864 5556777777777776643
No 97
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=93.77 E-value=1.8 Score=33.17 Aligned_cols=80 Identities=14% Similarity=0.287 Sum_probs=54.0
Q ss_pred HHHHHHHhhCCCccEEEEcCCC--CCCC--------------------HHHHHHHHHccCCCCCCcEEEEecCCC-----
Q 044790 11 QAWKILEDLMDQIDLVLTEVLM--PCLS--------------------GIGLLRKIMNHKTCKNIPVIMMSSHDS----- 63 (162)
Q Consensus 11 eal~~l~~~~~~~DlvllD~~m--p~~~--------------------g~~~~~~ir~~~~~~~~piI~lt~~~~----- 63 (162)
+.++.+.+ ...|++=+|+-. |-+| ++++++.+|.. ..+|+++|+-.+.
T Consensus 18 ~~~~~l~~--~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~---~~~pv~lm~y~n~~~~~G 92 (242)
T cd04724 18 EILKALVE--AGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKK---NTIPIVLMGYYNPILQYG 92 (242)
T ss_pred HHHHHHHH--CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhc---CCCCEEEEEecCHHHHhC
Confidence 44455555 678999999522 3344 45566666654 3678888886553
Q ss_pred -HHHHHHHHHcCCceEEeCCCCHHHHHHHHHHH
Q 044790 64 -MSIVFKCLSKGAVYFLVKPIRKNELQNLWQHV 95 (162)
Q Consensus 64 -~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~ 95 (162)
...+..+.++|+++++.-....+++...+..+
T Consensus 93 ~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~ 125 (242)
T cd04724 93 LERFLRDAKEAGVDGLIIPDLPPEEAEEFREAA 125 (242)
T ss_pred HHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHH
Confidence 66688889999999999776667665555544
No 98
>PRK00208 thiG thiazole synthase; Reviewed
Probab=93.74 E-value=1.7 Score=33.64 Aligned_cols=84 Identities=19% Similarity=0.203 Sum_probs=60.9
Q ss_pred EEEcCHHHHHHHHHhhCCCccEEEEcCCCC---------CCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcC
Q 044790 4 IAVENGLQAWKILEDLMDQIDLVLTEVLMP---------CLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKG 74 (162)
Q Consensus 4 ~~a~~~~eal~~l~~~~~~~DlvllD~~mp---------~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~G 74 (162)
+++.|...|-++ .. -.+++| || +..-.++++.|++. ..+|||+=..-..++++.++++.|
T Consensus 129 yc~~d~~~ak~l-~~--~G~~~v-----mPlg~pIGsg~gi~~~~~i~~i~e~---~~vpVIveaGI~tpeda~~AmelG 197 (250)
T PRK00208 129 YCTDDPVLAKRL-EE--AGCAAV-----MPLGAPIGSGLGLLNPYNLRIIIEQ---ADVPVIVDAGIGTPSDAAQAMELG 197 (250)
T ss_pred EeCCCHHHHHHH-HH--cCCCEe-----CCCCcCCCCCCCCCCHHHHHHHHHh---cCCeEEEeCCCCCHHHHHHHHHcC
Confidence 355666666444 43 467777 55 22126788888875 478999999999999999999999
Q ss_pred CceEEe-----CCCCHHHHHHHHHHHHHh
Q 044790 75 AVYFLV-----KPIRKNELQNLWQHVWRK 98 (162)
Q Consensus 75 a~~~l~-----KP~~~~~L~~~i~~~l~~ 98 (162)
+++.+. |.-++..+..++...+..
T Consensus 198 AdgVlV~SAItka~dP~~ma~af~~Av~a 226 (250)
T PRK00208 198 ADAVLLNTAIAVAGDPVAMARAFKLAVEA 226 (250)
T ss_pred CCEEEEChHhhCCCCHHHHHHHHHHHHHH
Confidence 999864 555677777777776654
No 99
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=93.69 E-value=0.59 Score=41.42 Aligned_cols=93 Identities=14% Similarity=0.095 Sum_probs=64.6
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|+|..+.+..+++..++.. ..+..|++++... ...+++.+|... ..+||+++........+-......+++|+.
T Consensus 31 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~--~~~Pv~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (713)
T PRK15399 31 FQTIWPQNSVDLLKFIEHN-PRICGVIFDWDEY---SLDLCSDINQLN--EYLPLYAFINTHSTMDVSVQDMRMALWFFE 104 (713)
T ss_pred cEEEEecCHHHHHHHHhcc-cceeEEEEecccc---hHHHHHHHHHhC--CCCCEEEEcCccccccCChhHhhhcceeee
Confidence 6789999999999988852 5689999996443 356889999877 899999998765444333344445677777
Q ss_pred CCCC-HHHHHHHHHHHHHhc
Q 044790 81 KPIR-KNELQNLWQHVWRKC 99 (162)
Q Consensus 81 KP~~-~~~L~~~i~~~l~~~ 99 (162)
.-.+ .+.+...|....+++
T Consensus 105 ~~~~~~~~~a~~i~~~~~~y 124 (713)
T PRK15399 105 YALGAAEDIAIRIRQYTNEY 124 (713)
T ss_pred eccCCHHHHHHHHHHHHHHH
Confidence 5544 344444465555554
No 100
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=93.63 E-value=0.95 Score=34.72 Aligned_cols=79 Identities=16% Similarity=0.112 Sum_probs=62.4
Q ss_pred HHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHH
Q 044790 13 WKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLW 92 (162)
Q Consensus 13 l~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i 92 (162)
.|.+.. ..||-+++|.+.-..+.-.++.+|+.....+..|||-... .++..+++.++.|+..+|..-++..+=.+.+
T Consensus 31 ~Ei~A~--aGfDwl~iD~EHapnd~~sl~~qL~a~~~~~~~pvVR~p~-g~~~~Ikq~LD~GAqtlliPmV~s~eqAr~~ 107 (255)
T COG3836 31 AEILAT--AGFDWLLIDGEHAPNDLQSLLHQLQAVAAYASPPVVRPPV-GDPVMIKQLLDIGAQTLLIPMVDTAEQARQA 107 (255)
T ss_pred HHHHHh--cCCCEEEecccccCccHHHHHHHHHHhhccCCCCeeeCCC-CCHHHHHHHHccccceeeeeccCCHHHHHHH
Confidence 455665 7899999999999999999999998876667777776554 6788899999999999998876665544444
Q ss_pred HH
Q 044790 93 QH 94 (162)
Q Consensus 93 ~~ 94 (162)
-+
T Consensus 108 V~ 109 (255)
T COG3836 108 VA 109 (255)
T ss_pred HH
Confidence 33
No 101
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=93.52 E-value=1.1 Score=39.76 Aligned_cols=88 Identities=7% Similarity=-0.067 Sum_probs=63.3
Q ss_pred cCHHHHHHHHHhhCCCccEEEEcCCCCCC--CHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCC
Q 044790 7 ENGLQAWKILEDLMDQIDLVLTEVLMPCL--SGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIR 84 (162)
Q Consensus 7 ~~~~eal~~l~~~~~~~DlvllD~~mp~~--~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~ 84 (162)
.+.+++.+...+ ..+|+|++...+... ..-++++.|++.. ..+++ |++.+...+.......++|+++||..-.+
T Consensus 620 ~s~e~~v~aa~~--~~a~ivvlcs~d~~~~e~~~~l~~~Lk~~G-~~~v~-vl~GG~~~~~~~~~l~~aGvD~~i~~g~d 695 (714)
T PRK09426 620 QTPEEAARQAVE--NDVHVVGVSSLAAGHKTLVPALIEALKKLG-REDIM-VVVGGVIPPQDYDFLYEAGVAAIFGPGTV 695 (714)
T ss_pred CCHHHHHHHHHH--cCCCEEEEeccchhhHHHHHHHHHHHHhcC-CCCcE-EEEeCCCChhhHHHHHhCCCCEEECCCCC
Confidence 467788888888 789999988766443 2346778887753 12233 44555434454566788999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 044790 85 KNELQNLWQHVWRK 98 (162)
Q Consensus 85 ~~~L~~~i~~~l~~ 98 (162)
..+++..+.+.+.-
T Consensus 696 ~~~~L~~l~~~l~~ 709 (714)
T PRK09426 696 IADAAIDLLELLSA 709 (714)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999888754
No 102
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=93.43 E-value=1.8 Score=32.52 Aligned_cols=86 Identities=12% Similarity=0.098 Sum_probs=54.2
Q ss_pred cCHHHHHHHHHhhCCCccEEEEcCCCCC---------CCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHH---HHHcC
Q 044790 7 ENGLQAWKILEDLMDQIDLVLTEVLMPC---------LSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFK---CLSKG 74 (162)
Q Consensus 7 ~~~~eal~~l~~~~~~~DlvllD~~mp~---------~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~---a~~~G 74 (162)
.+..+.++.... ..+|.|++|++-.. .+-.+++..++.... ....+++=....+.....+ ++..|
T Consensus 8 ~~~~~~~~~a~~--~g~D~vilDlEd~~~~~~K~~ar~~~~~~~~~~~~~~~-~~~~~~VRvn~~~~~~~~~Dl~~l~~g 84 (221)
T PF03328_consen 8 ANSPKMLEKAAA--SGADFVILDLEDGVPPDEKDEAREDLAEALRSIRAARA-AGSEIIVRVNSLDSPHIERDLEALDAG 84 (221)
T ss_dssp STSHHHHHHHHT--TCSSEEEEESSTTSSGGGHHHHHHHHHHHHHHHHHHTT-SSSEEEEE-SSTTCHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHh--cCCCEEEEeCcccCCcccchhhHHHHHHHHHhhccccc-ccccceecCCCCCcchhhhhhhhcccC
Confidence 344556677776 78999999998866 444556666654221 2345555555556656666 99999
Q ss_pred CceEEeCCC-CHHHHHHHHHHH
Q 044790 75 AVYFLVKPI-RKNELQNLWQHV 95 (162)
Q Consensus 75 a~~~l~KP~-~~~~L~~~i~~~ 95 (162)
+++++..=+ +.+++...+..+
T Consensus 85 ~~gI~lP~ves~~~~~~~~~~~ 106 (221)
T PF03328_consen 85 ADGIVLPKVESAEDARQAVAAL 106 (221)
T ss_dssp SSEEEETT--SHHHHHHHHHHH
T ss_pred CCeeeccccCcHHHHHHHHHHH
Confidence 999966554 455555555543
No 103
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=93.27 E-value=0.68 Score=41.07 Aligned_cols=93 Identities=13% Similarity=0.113 Sum_probs=63.0
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|+|..+.+..+++..++.. ..+..|++++.. ....++..+|... ..+||+++........+-.....-+++|+.
T Consensus 31 ~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~--~~~Pv~~~~~~~~~~~~~~~~l~~~~~~~~ 104 (714)
T PRK15400 31 FQIVYPNDRDDLLKLIENN-ARLCGVIFDWDK---YNLELCEEISKMN--ENLPLYAFANTYSTLDVSLNDLRLQVSFFE 104 (714)
T ss_pred cEEEEeCCHHHHHHHHhcc-cceeEEEEecch---hhHHHHHHHHHhC--CCCCEEEEccccccccCChHHhhhccceee
Confidence 6889999999999988852 568999999644 2255889998877 899999998765444333333344667766
Q ss_pred CCCC-HHHHHHHHHHHHHhc
Q 044790 81 KPIR-KNELQNLWQHVWRKC 99 (162)
Q Consensus 81 KP~~-~~~L~~~i~~~l~~~ 99 (162)
.-.+ .+.+..+|....+++
T Consensus 105 ~~~~~~~~~a~~i~~~~~~y 124 (714)
T PRK15400 105 YALGAADDIANKIKQTTDEY 124 (714)
T ss_pred eccCCHHHHHHHHHHHHHHH
Confidence 5433 344444455555544
No 104
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=93.00 E-value=0.34 Score=25.34 Aligned_cols=29 Identities=28% Similarity=0.574 Sum_probs=19.2
Q ss_pred EEEEEcCHHHHHHHHHhhCCCccEEEEcCCC
Q 044790 2 AVIAVENGLQAWKILEDLMDQIDLVLTEVLM 32 (162)
Q Consensus 2 ~v~~a~~~~eal~~l~~~~~~~DlvllD~~m 32 (162)
++..+.+..+++..+.. ..+|++++|+.+
T Consensus 26 ~~~~~~~~~~~~~~~~~--~~~~~vi~~~~~ 54 (55)
T smart00448 26 EVDEATDGEEALELLKE--EKPDLILLDIMM 54 (55)
T ss_pred EEEEeCCHHHHHHHHHh--cCCCEEEEeccC
Confidence 45556677777776665 567777777654
No 105
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=93.00 E-value=0.59 Score=37.59 Aligned_cols=65 Identities=12% Similarity=0.043 Sum_probs=46.8
Q ss_pred HHHHHHHHhhCC-CccEEEEcCCCCCCCH-HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEE
Q 044790 10 LQAWKILEDLMD-QIDLVLTEVLMPCLSG-IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFL 79 (162)
Q Consensus 10 ~eal~~l~~~~~-~~DlvllD~~mp~~~g-~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l 79 (162)
+++.++++. . .+|+|.+|+..+.... .+++++||+.. +.+|||+= .-...+.+..+.++|++..+
T Consensus 100 ~~~~~Lv~a--g~~~d~i~iD~a~gh~~~~~e~I~~ir~~~--p~~~vi~g-~V~t~e~a~~l~~aGad~i~ 166 (326)
T PRK05458 100 DFVDQLAAE--GLTPEYITIDIAHGHSDSVINMIQHIKKHL--PETFVIAG-NVGTPEAVRELENAGADATK 166 (326)
T ss_pred HHHHHHHhc--CCCCCEEEEECCCCchHHHHHHHHHHHhhC--CCCeEEEE-ecCCHHHHHHHHHcCcCEEE
Confidence 455555553 2 3699999999977544 66789998754 67777652 22367888999999999975
No 106
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=92.89 E-value=0.66 Score=36.04 Aligned_cols=56 Identities=16% Similarity=0.305 Sum_probs=41.5
Q ss_pred HHHHHHHHccCCCCCCcEEEEecCC------CHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHH
Q 044790 38 IGLLRKIMNHKTCKNIPVIMMSSHD------SMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHV 95 (162)
Q Consensus 38 ~~~~~~ir~~~~~~~~piI~lt~~~------~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~ 95 (162)
+++++.+|... +.+|+++|+=.+ ......++.++|+++.|.-.+..++....+...
T Consensus 77 ~~~~~~~r~~~--~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~ 138 (258)
T PRK13111 77 FELVREIREKD--PTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAA 138 (258)
T ss_pred HHHHHHHHhcC--CCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHH
Confidence 56677777443 689999998433 445688899999999999888887776666554
No 107
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=92.60 E-value=0.94 Score=35.12 Aligned_cols=81 Identities=22% Similarity=0.261 Sum_probs=55.3
Q ss_pred HHHHHHHhhCCCccEEEEcCCC--CCCC--------------------HHHHHHHHHccCCCCCCcEEEEecCCC-----
Q 044790 11 QAWKILEDLMDQIDLVLTEVLM--PCLS--------------------GIGLLRKIMNHKTCKNIPVIMMSSHDS----- 63 (162)
Q Consensus 11 eal~~l~~~~~~~DlvllD~~m--p~~~--------------------g~~~~~~ir~~~~~~~~piI~lt~~~~----- 63 (162)
+++..+.+ ...|+|=+.+-- |-.| .+++++.||+.. ..+|+++|+-.+.
T Consensus 28 ~~~~~l~~--~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~--~~~plv~m~Y~Npi~~~G 103 (256)
T TIGR00262 28 EIIKTLIE--AGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKH--PNIPIGLLTYYNLIFRKG 103 (256)
T ss_pred HHHHHHHH--cCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--CCCCEEEEEeccHHhhhh
Confidence 44444555 678888776632 2222 355577777542 5789888886655
Q ss_pred -HHHHHHHHHcCCceEEeCCCCHHHHHHHHHHH
Q 044790 64 -MSIVFKCLSKGAVYFLVKPIRKNELQNLWQHV 95 (162)
Q Consensus 64 -~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~ 95 (162)
...+.++.++|+++++.-....++....+..+
T Consensus 104 ~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~ 136 (256)
T TIGR00262 104 VEEFYAKCKEVGVDGVLVADLPLEESGDLVEAA 136 (256)
T ss_pred HHHHHHHHHHcCCCEEEECCCChHHHHHHHHHH
Confidence 67788899999999999988887766655544
No 108
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=92.40 E-value=3.6 Score=30.82 Aligned_cols=71 Identities=18% Similarity=0.166 Sum_probs=50.7
Q ss_pred EEcCHHHHHHHHHhhCCCccEEEEcCC-------CCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCce
Q 044790 5 AVENGLQAWKILEDLMDQIDLVLTEVL-------MPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVY 77 (162)
Q Consensus 5 ~a~~~~eal~~l~~~~~~~DlvllD~~-------mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~ 77 (162)
.+.+.+++.... . ..+|+|.+... ......++++++|+..- .+||+....-...+.+.++++.|+++
T Consensus 125 ~v~t~ee~~~a~-~--~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~---~iPvia~GGI~t~~~~~~~l~~Gadg 198 (221)
T PRK01130 125 DCSTLEEGLAAQ-K--LGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAV---GCPVIAEGRINTPEQAKKALELGAHA 198 (221)
T ss_pred eCCCHHHHHHHH-H--cCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhC---CCCEEEECCCCCHHHHHHHHHCCCCE
Confidence 456777775443 3 46898866421 12233478888888752 68999888888899999999999998
Q ss_pred EEeC
Q 044790 78 FLVK 81 (162)
Q Consensus 78 ~l~K 81 (162)
++.=
T Consensus 199 V~iG 202 (221)
T PRK01130 199 VVVG 202 (221)
T ss_pred EEEc
Confidence 8654
No 109
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=92.24 E-value=1.4 Score=34.84 Aligned_cols=70 Identities=14% Similarity=0.179 Sum_probs=48.4
Q ss_pred EEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEE
Q 044790 3 VIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFL 79 (162)
Q Consensus 3 v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l 79 (162)
.+.+++.+|+.+.+.. .+|+|++| +|.--.--+.++.++... +++ +|..++.-..+.+....+.|+|-+.
T Consensus 203 eVEv~tl~ea~eal~~---gaDiI~LD-nm~~e~vk~av~~~~~~~--~~v-~ieaSGGI~~~ni~~yA~tGvD~Is 272 (289)
T PRK07896 203 EVEVDSLEQLDEVLAE---GAELVLLD-NFPVWQTQEAVQRRDARA--PTV-LLESSGGLTLDTAAAYAETGVDYLA 272 (289)
T ss_pred EEEcCCHHHHHHHHHc---CCCEEEeC-CCCHHHHHHHHHHHhccC--CCE-EEEEECCCCHHHHHHHHhcCCCEEE
Confidence 4578899999999865 78999999 333222223334444332 333 6777888889999999999998764
No 110
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=92.21 E-value=2.8 Score=29.09 Aligned_cols=84 Identities=12% Similarity=0.005 Sum_probs=58.2
Q ss_pred EcCHHHHHHHHHhhCCCccEEEEcCCCCCC-CH-HHHHHHHHccCCCCCCcEEEEecCC--C----HHHHHHHHHcCCce
Q 044790 6 VENGLQAWKILEDLMDQIDLVLTEVLMPCL-SG-IGLLRKIMNHKTCKNIPVIMMSSHD--S----MSIVFKCLSKGAVY 77 (162)
Q Consensus 6 a~~~~eal~~l~~~~~~~DlvllD~~mp~~-~g-~~~~~~ir~~~~~~~~piI~lt~~~--~----~~~~~~a~~~Ga~~ 77 (162)
....++.++...+ ..+|+|.+...|... .. -++.+.+++.. ..+++| ++.... . .+...+..++|++.
T Consensus 36 ~v~~e~~v~aa~~--~~adiVglS~L~t~~~~~~~~~~~~l~~~g-l~~v~v-ivGG~~~i~~~d~~~~~~~L~~~Gv~~ 111 (128)
T cd02072 36 LSPQEEFIDAAIE--TDADAILVSSLYGHGEIDCKGLREKCDEAG-LKDILL-YVGGNLVVGKQDFEDVEKRFKEMGFDR 111 (128)
T ss_pred CCCHHHHHHHHHH--cCCCEEEEeccccCCHHHHHHHHHHHHHCC-CCCCeE-EEECCCCCChhhhHHHHHHHHHcCCCE
Confidence 3467788888888 899999998887543 22 45667777654 235444 454432 1 33446688899999
Q ss_pred EEeCCCCHHHHHHHHH
Q 044790 78 FLVKPIRKNELQNLWQ 93 (162)
Q Consensus 78 ~l~KP~~~~~L~~~i~ 93 (162)
.+...-+++++...|+
T Consensus 112 vf~pgt~~~~i~~~l~ 127 (128)
T cd02072 112 VFAPGTPPEEAIADLK 127 (128)
T ss_pred EECcCCCHHHHHHHHh
Confidence 9998888888887765
No 111
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=92.19 E-value=2.8 Score=32.99 Aligned_cols=61 Identities=10% Similarity=0.045 Sum_probs=46.2
Q ss_pred CHHHHHHHHHccCCCCCCcEE--EEecCCCHHHHHHHHHcCCceEEeC-----CCCHHHHHHHHHHHHHhc
Q 044790 36 SGIGLLRKIMNHKTCKNIPVI--MMSSHDSMSIVFKCLSKGAVYFLVK-----PIRKNELQNLWQHVWRKC 99 (162)
Q Consensus 36 ~g~~~~~~ir~~~~~~~~piI--~lt~~~~~~~~~~a~~~Ga~~~l~K-----P~~~~~L~~~i~~~l~~~ 99 (162)
.++++++.+++. ..+||| ....-..++.+..+++.|+++++.= .-++.+....+...+..+
T Consensus 181 ~d~elLk~l~~~---~~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~a~dP~~~tk~f~~ai~~~ 248 (283)
T cd04727 181 APYELVKETAKL---GRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPEKRARAIVEAVTHY 248 (283)
T ss_pred CCHHHHHHHHHh---cCCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhcCCCHHHHHHHHHHHHHhc
Confidence 578888888775 358997 6666668999999999999998543 346777777777766654
No 112
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=92.18 E-value=1.9 Score=31.49 Aligned_cols=70 Identities=20% Similarity=0.267 Sum_probs=50.3
Q ss_pred EEcCHHHHHHHHHhhCCCccEEEEcCCCCC--------CCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCc
Q 044790 5 AVENGLQAWKILEDLMDQIDLVLTEVLMPC--------LSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAV 76 (162)
Q Consensus 5 ~a~~~~eal~~l~~~~~~~DlvllD~~mp~--------~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~ 76 (162)
.+++..++.+.. + ..+|+|.++-..|. ..|++.++++.... +.+||+++.+- ..+.+.++++.|++
T Consensus 102 s~h~~~e~~~a~-~--~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~--~~~pv~a~GGI-~~~~~~~~~~~G~~ 175 (196)
T TIGR00693 102 STHNLEELAEAE-A--EGADYIGFGPIFPTPTKKDPAPPAGVELLREIAATS--IDIPIVAIGGI-TLENAAEVLAAGAD 175 (196)
T ss_pred eCCCHHHHHHHh-H--cCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhc--CCCCEEEECCc-CHHHHHHHHHcCCC
Confidence 566777776543 3 57899998765541 23788998887643 46898888765 57788888999999
Q ss_pred eEEe
Q 044790 77 YFLV 80 (162)
Q Consensus 77 ~~l~ 80 (162)
++..
T Consensus 176 gva~ 179 (196)
T TIGR00693 176 GVAV 179 (196)
T ss_pred EEEE
Confidence 8753
No 113
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=91.59 E-value=3.3 Score=32.65 Aligned_cols=61 Identities=13% Similarity=0.123 Sum_probs=47.4
Q ss_pred CHHHHHHHHHccCCCCCCcEE--EEecCCCHHHHHHHHHcCCceEE-----eCCCCHHHHHHHHHHHHHhc
Q 044790 36 SGIGLLRKIMNHKTCKNIPVI--MMSSHDSMSIVFKCLSKGAVYFL-----VKPIRKNELQNLWQHVWRKC 99 (162)
Q Consensus 36 ~g~~~~~~ir~~~~~~~~piI--~lt~~~~~~~~~~a~~~Ga~~~l-----~KP~~~~~L~~~i~~~l~~~ 99 (162)
.++++++++++. ..+||| ....-..++.+..+++.|+++++ .|.-++.+....+...+..+
T Consensus 184 ~~~elLkei~~~---~~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks~dP~~~akafv~ai~~~ 251 (287)
T TIGR00343 184 VPVELLLEVLKL---GKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKLAKAIVEATTHY 251 (287)
T ss_pred CCHHHHHHHHHh---CCCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcCCCHHHHHHHHHHHHHHc
Confidence 578899998875 368998 56666689999999999999985 44456788777777776664
No 114
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=91.51 E-value=2.2 Score=32.06 Aligned_cols=68 Identities=21% Similarity=0.257 Sum_probs=50.2
Q ss_pred CHHHHHHHHHhhCCCcc-EEEEcCCCCCC-CH--HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 8 NGLQAWKILEDLMDQID-LVLTEVLMPCL-SG--IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~D-lvllD~~mp~~-~g--~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
+..+..+.+.+ ..++ +++.|+.--++ .| +++++.+++. ..+||++-..-...+.+.++++.|+++++.
T Consensus 146 ~~~~~~~~~~~--~g~~~ii~~~~~~~g~~~g~~~~~i~~i~~~---~~ipvia~GGi~~~~di~~~~~~Gadgv~i 217 (230)
T TIGR00007 146 SLEELAKRLEE--LGLEGIIYTDISRDGTLSGPNFELTKELVKA---VNVPVIASGGVSSIDDLIALKKLGVYGVIV 217 (230)
T ss_pred CHHHHHHHHHh--CCCCEEEEEeecCCCCcCCCCHHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 34556666666 6677 66677754332 12 6788888765 478999999889999999999999999875
No 115
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=91.27 E-value=2.2 Score=31.34 Aligned_cols=69 Identities=14% Similarity=0.094 Sum_probs=52.4
Q ss_pred EEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeC
Q 044790 5 AVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVK 81 (162)
Q Consensus 5 ~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~K 81 (162)
-+.+..|+.+.++ ..+|+|-++- .+.. |.++++.++... +.+|++.+..- ..+.+.+.++.|++.+..-
T Consensus 103 gv~t~~e~~~A~~---~Gad~i~~~p-~~~~-g~~~~~~l~~~~--~~~p~~a~GGI-~~~n~~~~~~~G~~~v~v~ 171 (190)
T cd00452 103 GVATPTEIMQALE---LGADIVKLFP-AEAV-GPAYIKALKGPF--PQVRFMPTGGV-SLDNAAEWLAAGVVAVGGG 171 (190)
T ss_pred CcCCHHHHHHHHH---CCCCEEEEcC-Cccc-CHHHHHHHHhhC--CCCeEEEeCCC-CHHHHHHHHHCCCEEEEEc
Confidence 4557888888765 4789998864 3333 899999997643 57888877765 7888999999999887544
No 116
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=90.96 E-value=1.7 Score=31.59 Aligned_cols=69 Identities=16% Similarity=0.128 Sum_probs=48.2
Q ss_pred EEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEE
Q 044790 4 IAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFL 79 (162)
Q Consensus 4 ~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l 79 (162)
+.+++.+++.+.++. .+|+|.+|-.-|. +--++++.++... +. ..|.+++.-..+.+.+..+.|+|.|.
T Consensus 85 VEv~~~ee~~ea~~~---g~d~I~lD~~~~~-~~~~~v~~l~~~~--~~-v~ie~SGGI~~~ni~~ya~~gvD~is 153 (169)
T PF01729_consen 85 VEVENLEEAEEALEA---GADIIMLDNMSPE-DLKEAVEELRELN--PR-VKIEASGGITLENIAEYAKTGVDVIS 153 (169)
T ss_dssp EEESSHHHHHHHHHT---T-SEEEEES-CHH-HHHHHHHHHHHHT--TT-SEEEEESSSSTTTHHHHHHTT-SEEE
T ss_pred EEcCCHHHHHHHHHh---CCCEEEecCcCHH-HHHHHHHHHhhcC--Cc-EEEEEECCCCHHHHHHHHhcCCCEEE
Confidence 478889999998886 6999999966542 2233445555544 34 67778888888889999999988774
No 117
>PRK12704 phosphodiesterase; Provisional
Probab=90.82 E-value=0.72 Score=39.48 Aligned_cols=45 Identities=18% Similarity=0.159 Sum_probs=39.0
Q ss_pred cEEEEecCCCHH--HHHHHHHcCCceEEeCCCCHHHHHHHHHHHHHh
Q 044790 54 PVIMMSSHDSMS--IVFKCLSKGAVYFLVKPIRKNELQNLWQHVWRK 98 (162)
Q Consensus 54 piI~lt~~~~~~--~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 98 (162)
.+|++|+.+... ....+++.++.|+..||+..+++...++.-+..
T Consensus 251 ~~v~ls~~~~~rre~a~~~l~~l~~dg~i~P~~iee~~~~~~~~~~~ 297 (520)
T PRK12704 251 EAVILSGFDPIRREIARLALEKLVQDGRIHPARIEEMVEKARKEVDE 297 (520)
T ss_pred CeEEEecCChhhHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHH
Confidence 478899877666 788999999999999999999999999876654
No 118
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=90.52 E-value=3.4 Score=27.44 Aligned_cols=69 Identities=23% Similarity=0.289 Sum_probs=43.4
Q ss_pred CHHHHHHHHHhhCCCccEEEEcC-CCCCC-CHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHH--cCCceEEeC
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEV-LMPCL-SGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLS--KGAVYFLVK 81 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~-~mp~~-~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~--~Ga~~~l~K 81 (162)
+.++..+.+.+ ..||+|.+.. ..+.. ...++++.+|+.. +.++|++=... -.......++ .|+|..+.-
T Consensus 39 ~~~~l~~~~~~--~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~--p~~~iv~GG~~-~t~~~~~~l~~~~~~D~vv~G 111 (121)
T PF02310_consen 39 PPEELVEALRA--ERPDVVGISVSMTPNLPEAKRLARAIKERN--PNIPIVVGGPH-ATADPEEILREYPGIDYVVRG 111 (121)
T ss_dssp -HHHHHHHHHH--TTCSEEEEEESSSTHHHHHHHHHHHHHTTC--TTSEEEEEESS-SGHHHHHHHHHHHTSEEEEEE
T ss_pred CHHHHHHHHhc--CCCcEEEEEccCcCcHHHHHHHHHHHHhcC--CCCEEEEECCc-hhcChHHHhccCcCcceecCC
Confidence 45777788888 8999999988 44443 3356677777755 66766654443 3333444554 677766544
No 119
>PLN02591 tryptophan synthase
Probab=90.40 E-value=2 Score=33.21 Aligned_cols=56 Identities=13% Similarity=0.216 Sum_probs=41.7
Q ss_pred HHHHHHHHHccCCCCCCcEEEEecCC------CHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHH
Q 044790 37 GIGLLRKIMNHKTCKNIPVIMMSSHD------SMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHV 95 (162)
Q Consensus 37 g~~~~~~ir~~~~~~~~piI~lt~~~------~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~ 95 (162)
.+++++.+|.. ..+|+|+|+=.+ ......+|.++|+++.|.-.+..++....+...
T Consensus 66 ~~~~~~~~r~~---~~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~ 127 (250)
T PLN02591 66 VISMLKEVAPQ---LSCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEA 127 (250)
T ss_pred HHHHHHHHhcC---CCCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Confidence 35666777643 578999888544 344578888999999999999888777666654
No 120
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=90.37 E-value=2.5 Score=36.15 Aligned_cols=68 Identities=13% Similarity=0.091 Sum_probs=46.1
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCCCCC-CHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLMPCL-SGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~mp~~-~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
+..+-.+.|-+ ...|+|.+|..-... .-++++++||... ++++||+ ..-...+....+.++|||....
T Consensus 248 ~~~~r~~~l~~--ag~d~i~iD~~~g~~~~~~~~i~~ik~~~--p~~~vi~-g~v~t~e~a~~a~~aGaD~i~v 316 (505)
T PLN02274 248 SDKERLEHLVK--AGVDVVVLDSSQGDSIYQLEMIKYIKKTY--PELDVIG-GNVVTMYQAQNLIQAGVDGLRV 316 (505)
T ss_pred cHHHHHHHHHH--cCCCEEEEeCCCCCcHHHHHHHHHHHHhC--CCCcEEE-ecCCCHHHHHHHHHcCcCEEEE
Confidence 33344445555 579999999953221 2247899998754 6676664 3345678889999999998854
No 121
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=90.32 E-value=3.5 Score=31.56 Aligned_cols=65 Identities=20% Similarity=0.205 Sum_probs=51.7
Q ss_pred HHHHHHHhhCCCccEEEEcCCCCCC--CHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEE
Q 044790 11 QAWKILEDLMDQIDLVLTEVLMPCL--SGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFL 79 (162)
Q Consensus 11 eal~~l~~~~~~~DlvllD~~mp~~--~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l 79 (162)
+..+.+.+ ...|.|.+|...++. --++.++.|++.- ..+|||.--.-...+.+.+.++.||++..
T Consensus 152 ~~a~~l~~--aGad~i~Vd~~~~g~~~a~~~~I~~i~~~~--~~ipIIgNGgI~s~eda~e~l~~GAd~Vm 218 (231)
T TIGR00736 152 IDALNLVD--DGFDGIHVDAMYPGKPYADMDLLKILSEEF--NDKIIIGNNSIDDIESAKEMLKAGADFVS 218 (231)
T ss_pred HHHHHHHH--cCCCEEEEeeCCCCCchhhHHHHHHHHHhc--CCCcEEEECCcCCHHHHHHHHHhCCCeEE
Confidence 44455666 789999999777764 3588899998753 35999999988899999999999999875
No 122
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=90.28 E-value=3.2 Score=31.22 Aligned_cols=67 Identities=21% Similarity=0.229 Sum_probs=50.3
Q ss_pred HHHHHHHHHhhCCCcc-EEEEcCCCCCC-CH--HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcC-CceEEe
Q 044790 9 GLQAWKILEDLMDQID-LVLTEVLMPCL-SG--IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKG-AVYFLV 80 (162)
Q Consensus 9 ~~eal~~l~~~~~~~D-lvllD~~mp~~-~g--~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~G-a~~~l~ 80 (162)
..+..+.+.. ..++ +++.++..-++ .| +++++.+++. ..+|||.-..-...+.+.++++.| +++++.
T Consensus 148 ~~e~~~~~~~--~g~~~ii~~~~~~~g~~~G~d~~~i~~l~~~---~~ipvia~GGi~~~~di~~~~~~g~~~gv~v 219 (233)
T PRK00748 148 AEDLAKRFED--AGVKAIIYTDISRDGTLSGPNVEATRELAAA---VPIPVIASGGVSSLDDIKALKGLGAVEGVIV 219 (233)
T ss_pred HHHHHHHHHh--cCCCEEEEeeecCcCCcCCCCHHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHHHcCCccEEEE
Confidence 4566666666 5677 77777754332 33 7888888765 358999999889999999999988 999874
No 123
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=89.99 E-value=1.3 Score=33.73 Aligned_cols=68 Identities=21% Similarity=0.170 Sum_probs=52.8
Q ss_pred cCHHHHHHHHHhhCCCc-cEEEEcCCCCCC-CH--HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 7 ENGLQAWKILEDLMDQI-DLVLTEVLMPCL-SG--IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 7 ~~~~eal~~l~~~~~~~-DlvllD~~mp~~-~g--~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
.+..+.++.+.. . + .++++|+..-++ .| +++++.+.+. ..+||++-..-...+.+.++++.|+++.+.
T Consensus 146 ~~~~~~~~~~~~--~-~~~li~~di~~~G~~~g~~~~~~~~i~~~---~~ipvi~~GGi~s~edi~~l~~~G~~~viv 217 (233)
T cd04723 146 IGPEELLRRLAK--W-PEELIVLDIDRVGSGQGPDLELLERLAAR---ADIPVIAAGGVRSVEDLELLKKLGASGALV 217 (233)
T ss_pred CCHHHHHHHHHH--h-CCeEEEEEcCccccCCCcCHHHHHHHHHh---cCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 356777788877 6 5 488889976543 22 5677777664 479999999999999999999999999875
No 124
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=89.97 E-value=2.7 Score=33.22 Aligned_cols=70 Identities=13% Similarity=0.110 Sum_probs=46.3
Q ss_pred EEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 4 IAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 4 ~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
+.+++.+|+.+.+.. .+|+|.+|-.-|+ +=-++++.++... +.+++ ..++.-..+.+.+....|+|.+..
T Consensus 201 VEv~tleea~eA~~~---GaD~I~LDn~~~e-~l~~av~~~~~~~--~~i~l-eAsGGIt~~ni~~ya~tGvD~Isv 270 (288)
T PRK07428 201 VETETLEQVQEALEY---GADIIMLDNMPVD-LMQQAVQLIRQQN--PRVKI-EASGNITLETIRAVAETGVDYISS 270 (288)
T ss_pred EECCCHHHHHHHHHc---CCCEEEECCCCHH-HHHHHHHHHHhcC--CCeEE-EEECCCCHHHHHHHHHcCCCEEEE
Confidence 467899999998864 7899999933221 1122334444322 55654 455556788888889999997743
No 125
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=89.90 E-value=4.3 Score=29.16 Aligned_cols=69 Identities=25% Similarity=0.216 Sum_probs=49.0
Q ss_pred EcCHHHHHHHHHhhCCCccEEEEcCCCCC--------CCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCce
Q 044790 6 VENGLQAWKILEDLMDQIDLVLTEVLMPC--------LSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVY 77 (162)
Q Consensus 6 a~~~~eal~~l~~~~~~~DlvllD~~mp~--------~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~ 77 (162)
+.+..++.+... ..+|.|+++...|. ..+++.++++++. ..+||++..+- ..+.+..++..|+++
T Consensus 102 ~~t~~~~~~~~~---~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~pv~a~GGi-~~~~i~~~~~~Ga~~ 174 (196)
T cd00564 102 THSLEEALRAEE---LGADYVGFGPVFPTPTKPGAGPPLGLELLREIAEL---VEIPVVAIGGI-TPENAAEVLAAGADG 174 (196)
T ss_pred CCCHHHHHHHhh---cCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHh---CCCCEEEECCC-CHHHHHHHHHcCCCE
Confidence 355666666544 36999998755432 3557888888764 46899988776 467888999999998
Q ss_pred EEeC
Q 044790 78 FLVK 81 (162)
Q Consensus 78 ~l~K 81 (162)
+..=
T Consensus 175 i~~g 178 (196)
T cd00564 175 VAVI 178 (196)
T ss_pred EEEe
Confidence 8543
No 126
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=89.74 E-value=4.8 Score=30.12 Aligned_cols=71 Identities=21% Similarity=0.162 Sum_probs=50.7
Q ss_pred EEcCHHHHHHHHHhhCCCccEEEEcCC-------CCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCce
Q 044790 5 AVENGLQAWKILEDLMDQIDLVLTEVL-------MPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVY 77 (162)
Q Consensus 5 ~a~~~~eal~~l~~~~~~~DlvllD~~-------mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~ 77 (162)
.+.+..++..... ..+|+|.+... ......+++++.+++.- .+||+....-...+.+.+++..|+++
T Consensus 129 ~v~t~~ea~~a~~---~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~---~ipvia~GGI~~~~~~~~~l~~Gadg 202 (219)
T cd04729 129 DISTLEEALNAAK---LGFDIIGTTLSGYTEETAKTEDPDFELLKELRKAL---GIPVIAEGRINSPEQAAKALELGADA 202 (219)
T ss_pred ECCCHHHHHHHHH---cCCCEEEccCccccccccCCCCCCHHHHHHHHHhc---CCCEEEeCCCCCHHHHHHHHHCCCCE
Confidence 4567777755544 46888865321 12234578888888643 69999988888899999999999999
Q ss_pred EEeC
Q 044790 78 FLVK 81 (162)
Q Consensus 78 ~l~K 81 (162)
++.-
T Consensus 203 V~vG 206 (219)
T cd04729 203 VVVG 206 (219)
T ss_pred EEEc
Confidence 8754
No 127
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=89.72 E-value=3 Score=35.39 Aligned_cols=68 Identities=16% Similarity=0.130 Sum_probs=49.4
Q ss_pred cCHHHHHHHHHhhCCCccEEEEcCCCCCCCH-HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEE
Q 044790 7 ENGLQAWKILEDLMDQIDLVLTEVLMPCLSG-IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFL 79 (162)
Q Consensus 7 ~~~~eal~~l~~~~~~~DlvllD~~mp~~~g-~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l 79 (162)
.+..+-++.|-+ ...|+|++|...+.... .+++++||... +++|||+ ..-...+....+.++|++.+-
T Consensus 224 ~~~~~ra~~Lv~--aGVd~i~~D~a~g~~~~~~~~i~~i~~~~--~~~~vi~-g~~~t~~~~~~l~~~G~d~i~ 292 (475)
T TIGR01303 224 GDVGGKAKALLD--AGVDVLVIDTAHGHQVKMISAIKAVRALD--LGVPIVA-GNVVSAEGVRDLLEAGANIIK 292 (475)
T ss_pred ccHHHHHHHHHH--hCCCEEEEeCCCCCcHHHHHHHHHHHHHC--CCCeEEE-eccCCHHHHHHHHHhCCCEEE
Confidence 344555556665 67999999998855443 55688888754 7888876 435678888999999998764
No 128
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=89.55 E-value=3.3 Score=32.73 Aligned_cols=71 Identities=10% Similarity=0.104 Sum_probs=49.7
Q ss_pred EEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 3 VIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 3 v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
.+.+.+.+++.+.++. .+|+|++|- |+.-+--++++.++... +. .++-.++.-..+.+......|+|-+..
T Consensus 193 eVEv~tleqa~ea~~a---gaDiI~LDn-~~~e~l~~av~~~~~~~--~~-~~leaSGGI~~~ni~~yA~tGvD~Is~ 263 (284)
T PRK06096 193 VVEADTPKEAIAALRA---QPDVLQLDK-FSPQQATEIAQIAPSLA--PH-CTLSLAGGINLNTLKNYADCGIRLFIT 263 (284)
T ss_pred EEECCCHHHHHHHHHc---CCCEEEECC-CCHHHHHHHHHHhhccC--CC-eEEEEECCCCHHHHHHHHhcCCCEEEE
Confidence 3467899999999875 689999994 33323334445444322 33 467788888999999999999887643
No 129
>PRK07695 transcriptional regulator TenI; Provisional
Probab=89.52 E-value=6.8 Score=28.88 Aligned_cols=86 Identities=17% Similarity=0.197 Sum_probs=56.9
Q ss_pred EEcCHHHHHHHHHhhCCCccEEEEcCCCCC-------CCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCce
Q 044790 5 AVENGLQAWKILEDLMDQIDLVLTEVLMPC-------LSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVY 77 (162)
Q Consensus 5 ~a~~~~eal~~l~~~~~~~DlvllD~~mp~-------~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~ 77 (162)
.+++.+++.+. .+ ...|.|++....|. ..|++.++++... ..+||+++.+- ..+.+.+++..|+++
T Consensus 101 s~~s~e~a~~a-~~--~Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~---~~ipvia~GGI-~~~~~~~~~~~Ga~g 173 (201)
T PRK07695 101 SVHSLEEAIQA-EK--NGADYVVYGHVFPTDCKKGVPARGLEELSDIARA---LSIPVIAIGGI-TPENTRDVLAAGVSG 173 (201)
T ss_pred eCCCHHHHHHH-HH--cCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHh---CCCCEEEEcCC-CHHHHHHHHHcCCCE
Confidence 45566676554 34 57899987653321 2367888888764 36999988877 788899999999998
Q ss_pred EE-----eCCCCHHHHHHHHHHHHH
Q 044790 78 FL-----VKPIRKNELQNLWQHVWR 97 (162)
Q Consensus 78 ~l-----~KP~~~~~L~~~i~~~l~ 97 (162)
+. .+.-++.+....+.+.+.
T Consensus 174 vav~s~i~~~~~p~~~~~~~~~~~~ 198 (201)
T PRK07695 174 IAVMSGIFSSANPYSKAKRYAESIK 198 (201)
T ss_pred EEEEHHHhcCCCHHHHHHHHHHHHh
Confidence 73 233345555555555444
No 130
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=89.47 E-value=2 Score=33.54 Aligned_cols=56 Identities=11% Similarity=0.180 Sum_probs=41.3
Q ss_pred HHHHHHHHHccCCCCCCcEEEEecCC------CHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHH
Q 044790 37 GIGLLRKIMNHKTCKNIPVIMMSSHD------SMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHV 95 (162)
Q Consensus 37 g~~~~~~ir~~~~~~~~piI~lt~~~------~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~ 95 (162)
.+++++++|.. ..+|+++|+=.+ -...+.+|.++|++++|.-....++....+..+
T Consensus 79 ~~~~~~~~r~~---~~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~ 140 (263)
T CHL00200 79 ILSILSEVNGE---IKAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVC 140 (263)
T ss_pred HHHHHHHHhcC---CCCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHH
Confidence 36667777743 578988888554 355688899999999999988887766555544
No 131
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=89.30 E-value=2.2 Score=33.28 Aligned_cols=57 Identities=14% Similarity=0.208 Sum_probs=39.6
Q ss_pred HHHHHHHHccCCCCCCcEEEEecCC------CHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHHH
Q 044790 38 IGLLRKIMNHKTCKNIPVIMMSSHD------SMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVWR 97 (162)
Q Consensus 38 ~~~~~~ir~~~~~~~~piI~lt~~~------~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 97 (162)
+++++.+|+.. ..+|+++|+=.+ ......+|.+.|++++|.-.+.+++-. .+.....
T Consensus 82 lel~~~~r~~~--~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~-~~~~~~~ 144 (265)
T COG0159 82 LELVEEIRAKG--VKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESD-ELLKAAE 144 (265)
T ss_pred HHHHHHHHhcC--CCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHH-HHHHHHH
Confidence 45667777654 789999999554 234467889999999999877666554 3333333
No 132
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=89.00 E-value=4.9 Score=31.64 Aligned_cols=72 Identities=11% Similarity=0.057 Sum_probs=49.6
Q ss_pred EEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 4 IAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 4 ~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
+.+++.+++.+.++. .+|+|++|-..|. +--++++.++.... ..-..|..++.-..+.+.+..+.|+|-+..
T Consensus 187 VEv~~leea~~a~~a---gaDiI~LDn~~~e-~l~~~v~~l~~~~~-~~~~~leaSGGI~~~ni~~yA~tGvD~Is~ 258 (278)
T PRK08385 187 VEVESLEDALKAAKA---GADIIMLDNMTPE-EIREVIEALKREGL-RERVKIEVSGGITPENIEEYAKLDVDVISL 258 (278)
T ss_pred EEeCCHHHHHHHHHc---CcCEEEECCCCHH-HHHHHHHHHHhcCc-CCCEEEEEECCCCHHHHHHHHHcCCCEEEe
Confidence 478899999999875 6899999965443 22233444544221 123467777778889999999999987753
No 133
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=88.89 E-value=6.5 Score=27.81 Aligned_cols=90 Identities=9% Similarity=-0.011 Sum_probs=61.1
Q ss_pred EEcCHHHHHHHHHhhCCCccEEEEcCCCCCC--CHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCC
Q 044790 5 AVENGLQAWKILEDLMDQIDLVLTEVLMPCL--SGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKP 82 (162)
Q Consensus 5 ~a~~~~eal~~l~~~~~~~DlvllD~~mp~~--~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP 82 (162)
.+.+++|+....-+ +..|+|.+...-.+- ..-++.+.+|+... .++ ++++...-.++......+.|++.++..-
T Consensus 48 ~~~tp~e~v~aA~~--~dv~vIgvSsl~g~h~~l~~~lve~lre~G~-~~i-~v~~GGvip~~d~~~l~~~G~~~if~pg 123 (143)
T COG2185 48 LFQTPEEAVRAAVE--EDVDVIGVSSLDGGHLTLVPGLVEALREAGV-EDI-LVVVGGVIPPGDYQELKEMGVDRIFGPG 123 (143)
T ss_pred CcCCHHHHHHHHHh--cCCCEEEEEeccchHHHHHHHHHHHHHHhCC-cce-EEeecCccCchhHHHHHHhCcceeeCCC
Confidence 45688899888877 789999887643321 12334566666441 222 2456666677777777889999999888
Q ss_pred CCHHHHHHHHHHHHHh
Q 044790 83 IRKNELQNLWQHVWRK 98 (162)
Q Consensus 83 ~~~~~L~~~i~~~l~~ 98 (162)
.+..+....+...+..
T Consensus 124 t~~~~~~~~v~~~l~~ 139 (143)
T COG2185 124 TPIEEALSDLLTRLGA 139 (143)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 8888877777766554
No 134
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=88.82 E-value=1.3 Score=33.30 Aligned_cols=39 Identities=18% Similarity=0.279 Sum_probs=31.9
Q ss_pred CCCcEEEEecCC------CHHHHHHHHHcCCceEEeCCCCHHHHH
Q 044790 51 KNIPVIMMSSHD------SMSIVFKCLSKGAVYFLVKPIRKNELQ 89 (162)
Q Consensus 51 ~~~piI~lt~~~------~~~~~~~a~~~Ga~~~l~KP~~~~~L~ 89 (162)
-.+|||+++=++ ...++..+.++|+++||.-.+.+++-.
T Consensus 94 vt~PIiLmgYYNPIl~yG~e~~iq~ak~aGanGfiivDlPpEEa~ 138 (268)
T KOG4175|consen 94 VTCPIILMGYYNPILRYGVENYIQVAKNAGANGFIIVDLPPEEAE 138 (268)
T ss_pred cccceeeeecccHHHhhhHHHHHHHHHhcCCCceEeccCChHHHH
Confidence 579999998544 667788899999999999888777644
No 135
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=88.79 E-value=4 Score=33.90 Aligned_cols=56 Identities=18% Similarity=0.224 Sum_probs=42.8
Q ss_pred CCccEEEEcCCCCC-CCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEE
Q 044790 21 DQIDLVLTEVLMPC-LSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFL 79 (162)
Q Consensus 21 ~~~DlvllD~~mp~-~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l 79 (162)
..+|+|++|...+. ..-++++++||... |+++|| +..-...+....++++|+|.+.
T Consensus 164 aGvDvI~iD~a~g~~~~~~~~v~~ik~~~--p~~~vi-~g~V~T~e~a~~l~~aGaD~I~ 220 (404)
T PRK06843 164 AHVDILVIDSAHGHSTRIIELVKKIKTKY--PNLDLI-AGNIVTKEAALDLISVGADCLK 220 (404)
T ss_pred cCCCEEEEECCCCCChhHHHHHHHHHhhC--CCCcEE-EEecCCHHHHHHHHHcCCCEEE
Confidence 57999999998875 45567889998754 677755 4444567888999999999875
No 136
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=88.43 E-value=4.2 Score=32.91 Aligned_cols=57 Identities=14% Similarity=0.113 Sum_probs=42.9
Q ss_pred CccEEEEcCCCCCCCH-HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeC
Q 044790 22 QIDLVLTEVLMPCLSG-IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVK 81 (162)
Q Consensus 22 ~~DlvllD~~mp~~~g-~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~K 81 (162)
.+|+|++|+.-..... ++.+++||+.. +.. .|+...-...+.+..++++|||....-
T Consensus 121 ~~d~iviD~AhGhs~~~i~~ik~ir~~~--p~~-~viaGNV~T~e~a~~Li~aGAD~ikVg 178 (343)
T TIGR01305 121 QLKFICLDVANGYSEHFVEFVKLVREAF--PEH-TIMAGNVVTGEMVEELILSGADIVKVG 178 (343)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHHhhC--CCC-eEEEecccCHHHHHHHHHcCCCEEEEc
Confidence 5999999998766554 67789998754 554 444554667888999999999998543
No 137
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=88.11 E-value=10 Score=29.81 Aligned_cols=68 Identities=12% Similarity=0.177 Sum_probs=46.4
Q ss_pred EEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHH-HccC-CCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 4 IAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKI-MNHK-TCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 4 ~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~i-r~~~-~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
+.+++.+|+++.++. .+|+|.+|-. + ++.++++ +... ..+.+ +|..++.-.++.+.+..+.|+|-+..
T Consensus 187 VEv~tleea~~A~~~---GaDiI~LDn~----~-~e~l~~~v~~~~~~~~~~-~ieAsGgIt~~ni~~ya~~GvD~Isv 256 (273)
T PRK05848 187 IECESLEEAKNAMNA---GADIVMCDNM----S-VEEIKEVVAYRNANYPHV-LLEASGNITLENINAYAKSGVDAISS 256 (273)
T ss_pred EEeCCHHHHHHHHHc---CCCEEEECCC----C-HHHHHHHHHHhhccCCCe-EEEEECCCCHHHHHHHHHcCCCEEEe
Confidence 478899999999875 6899999843 2 2333222 2111 11343 56677777999999999999997754
No 138
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=88.08 E-value=8.2 Score=30.39 Aligned_cols=69 Identities=10% Similarity=0.073 Sum_probs=49.9
Q ss_pred EEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEE
Q 044790 4 IAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFL 79 (162)
Q Consensus 4 ~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l 79 (162)
+.+.+.+++.+.++. .+|+|++| .|+.-+-.+.++.+++.. +.+ +|..++.-..+.+......|+|-+.
T Consensus 193 VEv~tleea~ea~~~---GaDiI~lD-n~~~e~l~~~v~~l~~~~--~~~-~leasGGI~~~ni~~ya~~GvD~is 261 (277)
T TIGR01334 193 VEADTIEQALTVLQA---SPDILQLD-KFTPQQLHHLHERLKFFD--HIP-TLAAAGGINPENIADYIEAGIDLFI 261 (277)
T ss_pred EECCCHHHHHHHHHc---CcCEEEEC-CCCHHHHHHHHHHHhccC--CCE-EEEEECCCCHHHHHHHHhcCCCEEE
Confidence 467899999999875 69999999 344434445555555332 333 6778888899999999999988764
No 139
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=88.05 E-value=3.7 Score=34.81 Aligned_cols=65 Identities=11% Similarity=0.120 Sum_probs=48.0
Q ss_pred HHHHHHHHhhCCCccEEEEcCCCCCC-CHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEE
Q 044790 10 LQAWKILEDLMDQIDLVLTEVLMPCL-SGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFL 79 (162)
Q Consensus 10 ~eal~~l~~~~~~~DlvllD~~mp~~-~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l 79 (162)
.+..+.+.+ ..+|+|++|...... .-++.+++|+... +.+|||+ ..-...+.+..+.++|++.+.
T Consensus 230 ~e~a~~L~~--agvdvivvD~a~g~~~~vl~~i~~i~~~~--p~~~vi~-g~v~t~e~a~~l~~aGad~i~ 295 (486)
T PRK05567 230 EERAEALVE--AGVDVLVVDTAHGHSEGVLDRVREIKAKY--PDVQIIA-GNVATAEAARALIEAGADAVK 295 (486)
T ss_pred HHHHHHHHH--hCCCEEEEECCCCcchhHHHHHHHHHhhC--CCCCEEE-eccCCHHHHHHHHHcCCCEEE
Confidence 455555655 679999999764443 3467788888754 6788876 556678889999999998874
No 140
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=87.81 E-value=3.5 Score=34.61 Aligned_cols=65 Identities=11% Similarity=0.127 Sum_probs=46.7
Q ss_pred HHHHHHHHHhhCCCccEEEEcCCCCC-CCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEE
Q 044790 9 GLQAWKILEDLMDQIDLVLTEVLMPC-LSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFL 79 (162)
Q Consensus 9 ~~eal~~l~~~~~~~DlvllD~~mp~-~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l 79 (162)
.+.+..+++ ..+|+|.+|..-.. ..-++++++||+.. +++||++ ..-...+.+..+.++|++.+.
T Consensus 226 ~~r~~~L~~---aG~d~I~vd~a~g~~~~~~~~i~~i~~~~--~~~~vi~-G~v~t~~~a~~l~~aGad~i~ 291 (450)
T TIGR01302 226 KERAEALVK---AGVDVIVIDSSHGHSIYVIDSIKEIKKTY--PDLDIIA-GNVATAEQAKALIDAGADGLR 291 (450)
T ss_pred HHHHHHHHH---hCCCEEEEECCCCcHhHHHHHHHHHHHhC--CCCCEEE-EeCCCHHHHHHHHHhCCCEEE
Confidence 344544444 47999999996643 34567888888754 6888886 444577888999999999873
No 141
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=87.33 E-value=12 Score=29.29 Aligned_cols=60 Identities=12% Similarity=0.108 Sum_probs=46.5
Q ss_pred HHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCce------EEeCCCCHHHHHHHHHHHHHhccC
Q 044790 39 GLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVY------FLVKPIRKNELQNLWQHVWRKCHS 101 (162)
Q Consensus 39 ~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~------~l~KP~~~~~L~~~i~~~l~~~~~ 101 (162)
+.+.++++. ..+|||....-...+.+.+++..||+. ++.+|.-..++..-|.+++....+
T Consensus 224 ~~v~~i~~~---~~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~~p~~~~~i~~~l~~~~~~~g~ 289 (300)
T TIGR01037 224 RMVYDVYKM---VDIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYRGFAFKKIIEGLIAFLKAEGF 289 (300)
T ss_pred HHHHHHHhc---CCCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhcCchHHHHHHHHHHHHHHHcCC
Confidence 566777664 368999999999999999999999986 567786667777777777766543
No 142
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=87.15 E-value=3.3 Score=32.72 Aligned_cols=62 Identities=11% Similarity=0.071 Sum_probs=48.3
Q ss_pred CHHHHHHHHHccCCCCCCcEE--EEecCCCHHHHHHHHHcCCceEEe-----CCCCHHHHHHHHHHHHHhcc
Q 044790 36 SGIGLLRKIMNHKTCKNIPVI--MMSSHDSMSIVFKCLSKGAVYFLV-----KPIRKNELQNLWQHVWRKCH 100 (162)
Q Consensus 36 ~g~~~~~~ir~~~~~~~~piI--~lt~~~~~~~~~~a~~~Ga~~~l~-----KP~~~~~L~~~i~~~l~~~~ 100 (162)
.++++++++++. ..+||| ....-..++.+..+++.|+++++. |.-++.+....+.+.+..+.
T Consensus 190 ~~~elL~ei~~~---~~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ks~dP~~~akafv~ai~~~~ 258 (293)
T PRK04180 190 APYELVKEVAEL---GRLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSGDPEKRARAIVEATTHYD 258 (293)
T ss_pred CCHHHHHHHHHh---CCCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhcCCCHHHHHHHHHHHHHHcC
Confidence 468888888775 368998 666666899999999999999854 44578888888888777664
No 143
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=86.94 E-value=6.4 Score=30.83 Aligned_cols=70 Identities=13% Similarity=0.108 Sum_probs=48.8
Q ss_pred EEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 4 IAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 4 ~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
+.+.+.+++.+.++ ...|.|.+|-.-|. +--++++.++... +++|+++... -..+.+.+..+.|++.+..
T Consensus 188 Vev~t~eea~~A~~---~gaD~I~ld~~~p~-~l~~~~~~~~~~~--~~i~i~AsGG-I~~~ni~~~~~~Gvd~I~v 257 (272)
T cd01573 188 VEVDSLEEALAAAE---AGADILQLDKFSPE-ELAELVPKLRSLA--PPVLLAAAGG-INIENAAAYAAAGADILVT 257 (272)
T ss_pred EEcCCHHHHHHHHH---cCCCEEEECCCCHH-HHHHHHHHHhccC--CCceEEEECC-CCHHHHHHHHHcCCcEEEE
Confidence 46788899888775 47899999965553 1123445555432 4677776554 5778888999999998854
No 144
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=86.75 E-value=4.9 Score=32.76 Aligned_cols=69 Identities=16% Similarity=0.215 Sum_probs=47.2
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCCCCCCH-HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeC
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLMPCLSG-IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVK 81 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~mp~~~g-~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~K 81 (162)
+..+-.+.|-+ ...|+|++|..--.... .+++++||+.. +++||| .-.-...+.....+++|||....=
T Consensus 108 ~~~er~~~L~~--agvD~ivID~a~g~s~~~~~~ik~ik~~~--~~~~vi-aGNV~T~e~a~~L~~aGad~vkVG 177 (352)
T PF00478_consen 108 DDFERAEALVE--AGVDVIVIDSAHGHSEHVIDMIKKIKKKF--PDVPVI-AGNVVTYEGAKDLIDAGADAVKVG 177 (352)
T ss_dssp CHHHHHHHHHH--TT-SEEEEE-SSTTSHHHHHHHHHHHHHS--TTSEEE-EEEE-SHHHHHHHHHTT-SEEEES
T ss_pred HHHHHHHHHHH--cCCCEEEccccCccHHHHHHHHHHHHHhC--CCceEE-ecccCCHHHHHHHHHcCCCEEEEe
Confidence 44566666666 67899999987654433 66789998865 677777 555567788888999999987654
No 145
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=86.64 E-value=10 Score=30.20 Aligned_cols=71 Identities=18% Similarity=0.176 Sum_probs=52.2
Q ss_pred EEcCHHHHHHHHHhhCCCccEEEEcCCC-----CCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEE
Q 044790 5 AVENGLQAWKILEDLMDQIDLVLTEVLM-----PCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFL 79 (162)
Q Consensus 5 ~a~~~~eal~~l~~~~~~~DlvllD~~m-----p~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l 79 (162)
.+.+.+++....+ ..+|.|++.-.- ....-+.++++++.. ..+|||+-..-.+...+..++..|+++..
T Consensus 115 ~v~s~~~a~~a~~---~GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~---~~iPviaaGGI~~~~~~~~al~~GA~gV~ 188 (307)
T TIGR03151 115 VVASVALAKRMEK---AGADAVIAEGMESGGHIGELTTMALVPQVVDA---VSIPVIAAGGIADGRGMAAAFALGAEAVQ 188 (307)
T ss_pred EcCCHHHHHHHHH---cCCCEEEEECcccCCCCCCCcHHHHHHHHHHH---hCCCEEEECCCCCHHHHHHHHHcCCCEee
Confidence 4567777766554 478999874321 122358888888764 36999999888899999999999999875
Q ss_pred eC
Q 044790 80 VK 81 (162)
Q Consensus 80 ~K 81 (162)
.=
T Consensus 189 iG 190 (307)
T TIGR03151 189 MG 190 (307)
T ss_pred cc
Confidence 43
No 146
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=86.61 E-value=8.7 Score=29.01 Aligned_cols=68 Identities=16% Similarity=0.167 Sum_probs=51.1
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCCCCC-CH--HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLMPCL-SG--IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~mp~~-~g--~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
+..+..+.+.. ...-+|++|+.--++ .| +++++.+.+. ..+|||+-..-...+.+.++++.|+++.+.
T Consensus 142 ~~~~~~~~~~~--~g~~ii~tdI~~dGt~~G~d~eli~~i~~~---~~~pvia~GGi~s~ed~~~l~~~Ga~~viv 212 (221)
T TIGR00734 142 SLEEVRDFLNS--FDYGLIVLDIHSVGTMKGPNLELLTKTLEL---SEHPVMLGGGISGVEDLELLKEMGVSAVLV 212 (221)
T ss_pred cHHHHHHHHHh--cCCEEEEEECCccccCCCCCHHHHHHHHhh---CCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 44555666655 445789999976443 33 7788888765 478999888888999999999999999875
No 147
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=86.59 E-value=6.3 Score=29.20 Aligned_cols=69 Identities=9% Similarity=-0.024 Sum_probs=46.0
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCCCCCC-H-HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeC
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLMPCLS-G-IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVK 81 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~mp~~~-g-~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~K 81 (162)
..++.++.+.+ ..||+|.+...|...- . .++++.+|+....+.++|++=.....+ ..+.+.|+|.|-.-
T Consensus 123 p~e~~v~~~~~--~~pd~v~lS~~~~~~~~~~~~~i~~l~~~~~~~~v~i~vGG~~~~~---~~~~~~gad~~~~d 193 (197)
T TIGR02370 123 PIDTVVEKVKK--EKPLMLTGSALMTTTMYGQKDINDKLKEEGYRDSVKFMVGGAPVTQ---DWADKIGADVYGEN 193 (197)
T ss_pred CHHHHHHHHHH--cCCCEEEEccccccCHHHHHHHHHHHHHcCCCCCCEEEEEChhcCH---HHHHHhCCcEEeCC
Confidence 56778888888 8999999998876532 2 445677777542245666655444433 34567899998653
No 148
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=86.41 E-value=6.5 Score=29.11 Aligned_cols=70 Identities=9% Similarity=0.024 Sum_probs=48.4
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCCCCC--CHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCC
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLMPCL--SGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKP 82 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~mp~~--~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP 82 (162)
..++.++.+.+ ..||+|.+...|... .-.++++.||+......++|++=......+ .+-..|+|.|-.-.
T Consensus 121 p~~~l~~~~~~--~~~d~v~lS~~~~~~~~~~~~~i~~lr~~~~~~~~~i~vGG~~~~~~---~~~~~GaD~~~~da 192 (201)
T cd02070 121 PPEEFVEAVKE--HKPDILGLSALMTTTMGGMKEVIEALKEAGLRDKVKVMVGGAPVNQE---FADEIGADGYAEDA 192 (201)
T ss_pred CHHHHHHHHHH--cCCCEEEEeccccccHHHHHHHHHHHHHCCCCcCCeEEEECCcCCHH---HHHHcCCcEEECCH
Confidence 56788888888 899999999877653 235567888876522367777665544443 46677999987543
No 149
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=86.37 E-value=3.9 Score=31.22 Aligned_cols=67 Identities=16% Similarity=0.163 Sum_probs=50.8
Q ss_pred HHHHHHHHhhCCC-ccEEEEcCCCCCC-CH--HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeC
Q 044790 10 LQAWKILEDLMDQ-IDLVLTEVLMPCL-SG--IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVK 81 (162)
Q Consensus 10 ~eal~~l~~~~~~-~DlvllD~~mp~~-~g--~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~K 81 (162)
.+.++.+.. .. -.+|++|+..-++ .| +++++.+.+. ..+||++-..-...+.+.++++.|+++.+.=
T Consensus 151 ~~~~~~~~~--~g~~~ii~tdi~~dGt~~G~~~~li~~l~~~---~~ipvi~~GGi~s~edi~~l~~~G~~~vivG 221 (234)
T PRK13587 151 FSFVRQLSD--IPLGGIIYTDIAKDGKMSGPNFELTGQLVKA---TTIPVIASGGIRHQQDIQRLASLNVHAAIIG 221 (234)
T ss_pred HHHHHHHHH--cCCCEEEEecccCcCCCCccCHHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHHHcCCCEEEEh
Confidence 555666655 44 4688999976553 33 6677888764 4789999998999999999999999998753
No 150
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=86.06 E-value=5.4 Score=30.04 Aligned_cols=71 Identities=10% Similarity=0.078 Sum_probs=48.3
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCCCCC-C-HHHHHHHHHccCCCCCCcEEEEecCCCHHHHHH---HHHcCCceEEeCC
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLMPCL-S-GIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFK---CLSKGAVYFLVKP 82 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~mp~~-~-g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~---a~~~Ga~~~l~KP 82 (162)
..++.++.+.+ .+||+|.+...|+.. . --++++.|++.. ..++|++=......+.... +-..|+|.|-.-.
T Consensus 127 p~e~~v~~~~~--~~~~~V~lS~~~~~~~~~~~~~i~~L~~~~--~~~~i~vGG~~~~~~~~~~~~~~~~~gad~y~~da 202 (213)
T cd02069 127 PIEKILEAAKE--HKADIIGLSGLLVPSLDEMVEVAEEMNRRG--IKIPLLIGGAATSRKHTAVKIAPEYDGPVVYVKDA 202 (213)
T ss_pred CHHHHHHHHHH--cCCCEEEEccchhccHHHHHHHHHHHHhcC--CCCeEEEEChhcCHHHHhhhhccccCCCceEecCH
Confidence 46778888888 899999999988643 2 245677787764 5777776665545544432 2357998887544
No 151
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=86.00 E-value=7.8 Score=31.12 Aligned_cols=66 Identities=15% Similarity=0.121 Sum_probs=45.5
Q ss_pred HHHHHHHHhhCCCccEEEEcCCCCCC-CHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 10 LQAWKILEDLMDQIDLVLTEVLMPCL-SGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 10 ~eal~~l~~~~~~~DlvllD~~mp~~-~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
.+-++.+-+ ..+|+|.+|...... .-.+++++|++.. ++++|++ ..-...+.+..+.++|+|....
T Consensus 96 ~~~~~~l~e--agv~~I~vd~~~G~~~~~~~~i~~ik~~~--p~v~Vi~-G~v~t~~~A~~l~~aGaD~I~v 162 (325)
T cd00381 96 KERAEALVE--AGVDVIVIDSAHGHSVYVIEMIKFIKKKY--PNVDVIA-GNVVTAEAARDLIDAGADGVKV 162 (325)
T ss_pred HHHHHHHHh--cCCCEEEEECCCCCcHHHHHHHHHHHHHC--CCceEEE-CCCCCHHHHHHHHhcCCCEEEE
Confidence 344444555 579999999854332 3467888888754 5577665 4445678888999999998864
No 152
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=85.97 E-value=14 Score=28.36 Aligned_cols=79 Identities=20% Similarity=0.243 Sum_probs=54.2
Q ss_pred HHHHHHHHHhhCCCcc-EEEEcCC----CCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHc-CCceEEe--
Q 044790 9 GLQAWKILEDLMDQID-LVLTEVL----MPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSK-GAVYFLV-- 80 (162)
Q Consensus 9 ~~eal~~l~~~~~~~D-lvllD~~----mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~-Ga~~~l~-- 80 (162)
..+..+.+.+ ..++ +++.++. +.+. -+++++.+++. ..+|||.-..-.+.+.+.++++. |+++.+.
T Consensus 155 ~~~~~~~~~~--~g~~~ii~~~i~~~g~~~g~-d~~~i~~~~~~---~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~ 228 (253)
T PRK02083 155 AVEWAKEVEE--LGAGEILLTSMDRDGTKNGY-DLELTRAVSDA---VNVPVIASGGAGNLEHFVEAFTEGGADAALAAS 228 (253)
T ss_pred HHHHHHHHHH--cCCCEEEEcCCcCCCCCCCc-CHHHHHHHHhh---CCCCEEEECCCCCHHHHHHHHHhCCccEEeEhH
Confidence 3455566666 5676 5564543 2232 27778888765 36899999999999999999975 9998876
Q ss_pred ----CCCCHHHHHHHHH
Q 044790 81 ----KPIRKNELQNLWQ 93 (162)
Q Consensus 81 ----KP~~~~~L~~~i~ 93 (162)
.-++.+++...++
T Consensus 229 al~~~~~~~~~~~~~~~ 245 (253)
T PRK02083 229 IFHFGEITIGELKAYLA 245 (253)
T ss_pred HHHcCCCCHHHHHHHHH
Confidence 3466666665554
No 153
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=85.47 E-value=15 Score=28.28 Aligned_cols=80 Identities=18% Similarity=0.206 Sum_probs=54.2
Q ss_pred CHHHHHHHHHhhCCCccEEEE-cCCC----CCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcC-CceEEe-
Q 044790 8 NGLQAWKILEDLMDQIDLVLT-EVLM----PCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKG-AVYFLV- 80 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~Dlvll-D~~m----p~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~G-a~~~l~- 80 (162)
+..+..+.+.+ ..+|.|++ |+.- ++.+ +++++.+++. ..+|||....-...+.+.+++..| +++.+.
T Consensus 156 ~~~~~~~~l~~--~G~~~iivt~i~~~g~~~g~~-~~~~~~i~~~---~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g 229 (254)
T TIGR00735 156 DAVEWAKEVEK--LGAGEILLTSMDKDGTKSGYD-LELTKAVSEA---VKIPVIASGGAGKPEHFYEAFTKGKADAALAA 229 (254)
T ss_pred CHHHHHHHHHH--cCCCEEEEeCcCcccCCCCCC-HHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHHHcCCcceeeEh
Confidence 34455566666 67886555 4322 2222 6788888865 478999999999999999999988 998543
Q ss_pred -----CCCCHHHHHHHHH
Q 044790 81 -----KPIRKNELQNLWQ 93 (162)
Q Consensus 81 -----KP~~~~~L~~~i~ 93 (162)
.-++..++...+.
T Consensus 230 ~a~~~~~~~~~~~~~~~~ 247 (254)
T TIGR00735 230 SVFHYREITIGEVKEYLA 247 (254)
T ss_pred HHHhCCCCCHHHHHHHHH
Confidence 3455565555544
No 154
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=85.31 E-value=9.3 Score=27.68 Aligned_cols=69 Identities=19% Similarity=0.139 Sum_probs=49.1
Q ss_pred EEEcCHHHHHHHHHhhCCCccEEEEcCCCCC-------CCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCc
Q 044790 4 IAVENGLQAWKILEDLMDQIDLVLTEVLMPC-------LSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAV 76 (162)
Q Consensus 4 ~~a~~~~eal~~l~~~~~~~DlvllD~~mp~-------~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~ 76 (162)
..+++.+++.+.. + ..+|.|++.-.-|- .-|++.++++++.. .+||+.+.+-. .+.+..+.+.|++
T Consensus 100 ~S~h~~~e~~~a~-~--~g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~---~~pv~AlGGI~-~~~i~~l~~~Ga~ 172 (180)
T PF02581_consen 100 ASCHSLEEAREAE-E--LGADYVFLGPVFPTSSKPGAPPLGLDGLREIARAS---PIPVYALGGIT-PENIPELREAGAD 172 (180)
T ss_dssp EEESSHHHHHHHH-H--CTTSEEEEETSS--SSSSS-TTCHHHHHHHHHHHT---SSCEEEESS---TTTHHHHHHTT-S
T ss_pred eecCcHHHHHHhh-h--cCCCEEEECCccCCCCCccccccCHHHHHHHHHhC---CCCEEEEcCCC-HHHHHHHHHcCCC
Confidence 3678888865554 4 57899999876443 34889898887653 59999999864 5557788999999
Q ss_pred eEE
Q 044790 77 YFL 79 (162)
Q Consensus 77 ~~l 79 (162)
++-
T Consensus 173 gvA 175 (180)
T PF02581_consen 173 GVA 175 (180)
T ss_dssp EEE
T ss_pred EEE
Confidence 874
No 155
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=85.00 E-value=9.6 Score=25.76 Aligned_cols=86 Identities=14% Similarity=0.161 Sum_probs=52.5
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCCCCC-CHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHH
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLMPCL-SGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKN 86 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~mp~~-~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~ 86 (162)
.-++.++.+... ..||+|.+.+..+.. ...++++.||+.. ++++||+-...... .....+..-..||+.+--...
T Consensus 26 ~~~~~~~~~~~~-~~pdiv~~S~~~~~~~~~~~~~~~ik~~~--p~~~iv~GG~~~t~-~p~~~~~~~~~D~vv~GEgE~ 101 (127)
T cd02068 26 SADDIVEDIKEL-LKPDVVGISLMTSAIYEALELAKIAKEVL--PNVIVVVGGPHATF-FPEEILEEPGVDFVVIGEGEE 101 (127)
T ss_pred CHHHHHHHHHHh-cCCCEEEEeeccccHHHHHHHHHHHHHHC--CCCEEEECCcchhh-CHHHHhcCCCCCEEEECCcHH
Confidence 345556666432 479999999855544 3466888998865 77777655444322 222224444457888776666
Q ss_pred HHHHHHHHHHH
Q 044790 87 ELQNLWQHVWR 97 (162)
Q Consensus 87 ~L~~~i~~~l~ 97 (162)
.+...++.+.+
T Consensus 102 ~~~~l~~~l~~ 112 (127)
T cd02068 102 TFLKLLEELEE 112 (127)
T ss_pred HHHHHHHHHHc
Confidence 66666666543
No 156
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=84.84 E-value=2.3 Score=33.16 Aligned_cols=76 Identities=18% Similarity=0.365 Sum_probs=48.8
Q ss_pred HHHHHHHHhhCCCccEEEEcCCC--CCCCH--------------------HHHHHHHHccCCCCCCcEEEEecCC-----
Q 044790 10 LQAWKILEDLMDQIDLVLTEVLM--PCLSG--------------------IGLLRKIMNHKTCKNIPVIMMSSHD----- 62 (162)
Q Consensus 10 ~eal~~l~~~~~~~DlvllD~~m--p~~~g--------------------~~~~~~ir~~~~~~~~piI~lt~~~----- 62 (162)
.++++.+.+ ...|+|=+.+-- |--|| +++++.||... ..+|+|+|+=.+
T Consensus 27 ~~~~~~l~~--~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~--~~~pivlm~Y~N~i~~~ 102 (259)
T PF00290_consen 27 LEILKALEE--AGADIIEIGIPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEIRKKE--PDIPIVLMTYYNPIFQY 102 (259)
T ss_dssp HHHHHHHHH--TTBSSEEEE--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHHHHHC--TSSEEEEEE-HHHHHHH
T ss_pred HHHHHHHHH--cCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHhccC--CCCCEEEEeeccHHhcc
Confidence 445555555 667777665522 32333 45667777443 799999999543
Q ss_pred -CHHHHHHHHHcCCceEEeCCCCHHHHH
Q 044790 63 -SMSIVFKCLSKGAVYFLVKPIRKNELQ 89 (162)
Q Consensus 63 -~~~~~~~a~~~Ga~~~l~KP~~~~~L~ 89 (162)
-.....+|.++|++++|...+..++-.
T Consensus 103 G~e~F~~~~~~aGvdGlIipDLP~ee~~ 130 (259)
T PF00290_consen 103 GIERFFKEAKEAGVDGLIIPDLPPEESE 130 (259)
T ss_dssp -HHHHHHHHHHHTEEEEEETTSBGGGHH
T ss_pred chHHHHHHHHHcCCCEEEEcCCChHHHH
Confidence 334677788899999999977766543
No 157
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=84.83 E-value=6.4 Score=31.90 Aligned_cols=54 Identities=9% Similarity=0.071 Sum_probs=41.4
Q ss_pred CccEEEEcCCCCCCCH-HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceE
Q 044790 22 QIDLVLTEVLMPCLSG-IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYF 78 (162)
Q Consensus 22 ~~DlvllD~~mp~~~g-~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~ 78 (162)
.+|+|++|+.-..... ++++++||+.. |+++|| ...-...+.....+.+|||..
T Consensus 122 g~D~iviD~AhGhs~~~i~~ik~ik~~~--P~~~vI-aGNV~T~e~a~~Li~aGAD~v 176 (346)
T PRK05096 122 ALNFICIDVANGYSEHFVQFVAKAREAW--PDKTIC-AGNVVTGEMVEELILSGADIV 176 (346)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHHHhC--CCCcEE-EecccCHHHHHHHHHcCCCEE
Confidence 6999999998766554 66788888754 777644 555667788888899999976
No 158
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=84.79 E-value=17 Score=28.56 Aligned_cols=86 Identities=14% Similarity=0.202 Sum_probs=60.6
Q ss_pred EEcCHHHHHHHHHhhCCCccEEEEcC--------CCCCCCHHHHHHHHHccCCCCCCcEEEEecC-CCHHHHHHHHHcCC
Q 044790 5 AVENGLQAWKILEDLMDQIDLVLTEV--------LMPCLSGIGLLRKIMNHKTCKNIPVIMMSSH-DSMSIVFKCLSKGA 75 (162)
Q Consensus 5 ~a~~~~eal~~l~~~~~~~DlvllD~--------~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~-~~~~~~~~a~~~Ga 75 (162)
.+++.++|.+.+++ ..+|.+-+.+ .-|.. +++.++.|++.- .+|+++..+. -..+.+.++++.|+
T Consensus 151 ~~t~~eea~~f~~~--tgvD~Lavs~Gt~hg~~~~~~~l-~~e~L~~i~~~~---~iPlv~hGgSGi~~e~i~~~i~~Gi 224 (282)
T TIGR01859 151 ELADPDEAEQFVKE--TGVDYLAAAIGTSHGKYKGEPGL-DFERLKEIKELT---NIPLVLHGASGIPEEQIKKAIKLGI 224 (282)
T ss_pred ccCCHHHHHHHHHH--HCcCEEeeccCccccccCCCCcc-CHHHHHHHHHHh---CCCEEEECCCCCCHHHHHHHHHcCC
Confidence 36799999999987 6789888552 11334 488999998753 6999888743 35667888999999
Q ss_pred ceEEeCCCCHHHHHHHHHHHH
Q 044790 76 VYFLVKPIRKNELQNLWQHVW 96 (162)
Q Consensus 76 ~~~l~KP~~~~~L~~~i~~~l 96 (162)
..+=.-..-.......++..+
T Consensus 225 ~kiNv~T~l~~a~~~~~~~~~ 245 (282)
T TIGR01859 225 AKINIDTDCRIAFTAAIRKVL 245 (282)
T ss_pred CEEEECcHHHHHHHHHHHHHH
Confidence 998555444455555555554
No 159
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=84.78 E-value=14 Score=27.48 Aligned_cols=72 Identities=13% Similarity=0.160 Sum_probs=46.2
Q ss_pred CCccEE-EEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe--CCCCHHHHHHHHHHH
Q 044790 21 DQIDLV-LTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV--KPIRKNELQNLWQHV 95 (162)
Q Consensus 21 ~~~Dlv-llD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~--KP~~~~~L~~~i~~~ 95 (162)
...+.| ++|...--...++.++.+++. ..+||++..--.+...+..+++.|++..+. .-+..+.+...++..
T Consensus 43 ~GA~~l~v~~~~~~~~g~~~~~~~i~~~---v~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~ 117 (217)
T cd00331 43 AGAAAISVLTEPKYFQGSLEDLRAVREA---VSLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQLKELYELA 117 (217)
T ss_pred cCCCEEEEEeCccccCCCHHHHHHHHHh---cCCCEEECCeecCHHHHHHHHHcCCCEEEEeeccCCHHHHHHHHHHH
Confidence 344444 445444444567888999875 378999766445666788999999999973 233334555544443
No 160
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=84.58 E-value=18 Score=28.62 Aligned_cols=66 Identities=17% Similarity=0.065 Sum_probs=46.9
Q ss_pred EEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEE
Q 044790 4 IAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFL 79 (162)
Q Consensus 4 ~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l 79 (162)
+.+++.+++.+.++. .+|+|++|-.-| -++-+.+.... ... ++..++.-..+.+.+..+.|+|-+.
T Consensus 199 VEv~tleea~ea~~~---gaDiI~LDn~s~----e~l~~av~~~~--~~~-~leaSGGI~~~ni~~yA~tGVD~Is 264 (281)
T PRK06106 199 VEVDTLDQLEEALEL---GVDAVLLDNMTP----DTLREAVAIVA--GRA-ITEASGRITPETAPAIAASGVDLIS 264 (281)
T ss_pred EEeCCHHHHHHHHHc---CCCEEEeCCCCH----HHHHHHHHHhC--CCc-eEEEECCCCHHHHHHHHhcCCCEEE
Confidence 578899999999875 789999995433 23333333222 233 3778888899999999999998664
No 161
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=84.56 E-value=7.6 Score=28.39 Aligned_cols=73 Identities=14% Similarity=0.101 Sum_probs=43.8
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCCC--CCCHHHHHHHHHccCCCCCCcEEEEe--cCCCHHHHHHHHHcCCceEEeCCC
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLMP--CLSGIGLLRKIMNHKTCKNIPVIMMS--SHDSMSIVFKCLSKGAVYFLVKPI 83 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~mp--~~~g~~~~~~ir~~~~~~~~piI~lt--~~~~~~~~~~a~~~Ga~~~l~KP~ 83 (162)
+.+++++.++.....+++ +.+.+| ...|+++++.+|+.. +++|+++-. ..........+.++|++.++.-..
T Consensus 11 ~~~~~~~~~~~l~~~i~~--ieig~~~~~~~g~~~i~~i~~~~--~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h~~ 86 (202)
T cd04726 11 DLEEALELAKKVPDGVDI--IEAGTPLIKSEGMEAVRALREAF--PDKIIVADLKTADAGALEAEMAFKAGADIVTVLGA 86 (202)
T ss_pred CHHHHHHHHHHhhhcCCE--EEcCCHHHHHhCHHHHHHHHHHC--CCCEEEEEEEeccccHHHHHHHHhcCCCEEEEEee
Confidence 566777776653222444 444333 345688899998753 567777632 222223457788999998876544
Q ss_pred C
Q 044790 84 R 84 (162)
Q Consensus 84 ~ 84 (162)
.
T Consensus 87 ~ 87 (202)
T cd04726 87 A 87 (202)
T ss_pred C
Confidence 3
No 162
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=84.24 E-value=16 Score=28.72 Aligned_cols=60 Identities=15% Similarity=0.201 Sum_probs=43.7
Q ss_pred HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceE------EeCCCCHHHHHHHHHHHHHhcc
Q 044790 38 IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYF------LVKPIRKNELQNLWQHVWRKCH 100 (162)
Q Consensus 38 ~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~------l~KP~~~~~L~~~i~~~l~~~~ 100 (162)
++.+++|++. ..+|||....-.+.+.+.+++..||+.+ +..|.-...+..-+..++.+..
T Consensus 223 l~~v~~i~~~---~~ipvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~~P~~~~~i~~~l~~~~~~~g 288 (301)
T PRK07259 223 LRMVYQVYQA---VDIPIIGMGGISSAEDAIEFIMAGASAVQVGTANFYDPYAFPKIIEGLEAYLDKYG 288 (301)
T ss_pred HHHHHHHHHh---CCCCEEEECCCCCHHHHHHHHHcCCCceeEcHHHhcCcHHHHHHHHHHHHHHHHcC
Confidence 5677888764 3799999999999999999999998754 3345555566666665555543
No 163
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=84.17 E-value=19 Score=28.40 Aligned_cols=88 Identities=15% Similarity=0.161 Sum_probs=61.6
Q ss_pred EEcCHHHHHHHHHhhCCCccEEEEcC--CC---C--CCCHHHHHHHHHccCCCCCCcEEEEecCC-CHHHHHHHHHcCCc
Q 044790 5 AVENGLQAWKILEDLMDQIDLVLTEV--LM---P--CLSGIGLLRKIMNHKTCKNIPVIMMSSHD-SMSIVFKCLSKGAV 76 (162)
Q Consensus 5 ~a~~~~eal~~l~~~~~~~DlvllD~--~m---p--~~~g~~~~~~ir~~~~~~~~piI~lt~~~-~~~~~~~a~~~Ga~ 76 (162)
.+++.++|.+..+. ..+|.+-+.+ .. | ..=|++.++.|++. ..+|+++..+.. ..+.+.++++.|+.
T Consensus 151 s~t~~eea~~f~~~--tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~---~~iPlV~hG~SGI~~e~~~~~i~~G~~ 225 (281)
T PRK06806 151 LLTSTTEAKRFAEE--TDVDALAVAIGNAHGMYNGDPNLRFDRLQEINDV---VHIPLVLHGGSGISPEDFKKCIQHGIR 225 (281)
T ss_pred eeCCHHHHHHHHHh--hCCCEEEEccCCCCCCCCCCCccCHHHHHHHHHh---cCCCEEEECCCCCCHHHHHHHHHcCCc
Confidence 47899999999877 6789888833 21 1 23478899999875 369999888443 66778889999999
Q ss_pred eEEeCCCCHHHHHHHHHHHHH
Q 044790 77 YFLVKPIRKNELQNLWQHVWR 97 (162)
Q Consensus 77 ~~l~KP~~~~~L~~~i~~~l~ 97 (162)
.+=.-..-.......++.++.
T Consensus 226 kinv~T~i~~a~~~a~~~~~~ 246 (281)
T PRK06806 226 KINVATATFNSVITAVNNLVL 246 (281)
T ss_pred EEEEhHHHHHHHHHHHHHHHH
Confidence 884433222345555555554
No 164
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=83.48 E-value=6.6 Score=29.81 Aligned_cols=71 Identities=14% Similarity=0.186 Sum_probs=52.9
Q ss_pred EcCHHHHHHHHHhhCCCcc-EEEEcCCCCC-C--CHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeC
Q 044790 6 VENGLQAWKILEDLMDQID-LVLTEVLMPC-L--SGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVK 81 (162)
Q Consensus 6 a~~~~eal~~l~~~~~~~D-lvllD~~mp~-~--~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~K 81 (162)
..+..+..+.+.. ..+| +++.|+.--+ . .-++++++|++. ..+||++-..-...+.+.+++..|++..+.=
T Consensus 26 ~~d~~~~a~~~~~--~G~~~i~i~d~~~~~~~~~~~~~~i~~i~~~---~~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig 100 (243)
T cd04731 26 AGDPVELAKRYNE--QGADELVFLDITASSEGRETMLDVVERVAEE---VFIPLTVGGGIRSLEDARRLLRAGADKVSIN 100 (243)
T ss_pred CCCHHHHHHHHHH--CCCCEEEEEcCCcccccCcccHHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHHHcCCceEEEC
Confidence 3477788888887 6676 7777886422 1 225678888765 3689999999999999999999999877544
No 165
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=83.11 E-value=14 Score=27.47 Aligned_cols=69 Identities=20% Similarity=0.190 Sum_probs=46.4
Q ss_pred EcCHHHHHHHHHhhCCCccEEEEcC------CCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEE
Q 044790 6 VENGLQAWKILEDLMDQIDLVLTEV------LMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFL 79 (162)
Q Consensus 6 a~~~~eal~~l~~~~~~~DlvllD~------~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l 79 (162)
+++.+|++...+. .+|+|=.=+ ......-|+++++|.+ ..+|||.=.....++.+.++++.||+..+
T Consensus 99 ist~ee~~~A~~~---G~D~I~TTLsGYT~~t~~~~pD~~lv~~l~~----~~~pvIaEGri~tpe~a~~al~~GA~aVV 171 (192)
T PF04131_consen 99 ISTLEEAINAAEL---GFDIIGTTLSGYTPYTKGDGPDFELVRELVQ----ADVPVIAEGRIHTPEQAAKALELGAHAVV 171 (192)
T ss_dssp -SSHHHHHHHHHT---T-SEEE-TTTTSSTTSTTSSHHHHHHHHHHH----TTSEEEEESS--SHHHHHHHHHTT-SEEE
T ss_pred cCCHHHHHHHHHc---CCCEEEcccccCCCCCCCCCCCHHHHHHHHh----CCCcEeecCCCCCHHHHHHHHhcCCeEEE
Confidence 4577777776654 688775432 1123455889999986 36888888888899999999999999987
Q ss_pred eC
Q 044790 80 VK 81 (162)
Q Consensus 80 ~K 81 (162)
.=
T Consensus 172 VG 173 (192)
T PF04131_consen 172 VG 173 (192)
T ss_dssp E-
T ss_pred EC
Confidence 54
No 166
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=83.07 E-value=7.8 Score=32.93 Aligned_cols=67 Identities=10% Similarity=0.100 Sum_probs=47.1
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCCC-CCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEE
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLMP-CLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFL 79 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~mp-~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l 79 (162)
+..+.++.+.+ ...|+|++|..-- ...-++++++||+.. ++++||. ..-...+....++++|||.+-
T Consensus 227 ~~~~~a~~Lv~--aGvd~i~~D~a~~~~~~~~~~i~~ik~~~--p~~~v~a-gnv~t~~~a~~l~~aGad~v~ 294 (479)
T PRK07807 227 DVAAKARALLE--AGVDVLVVDTAHGHQEKMLEALRAVRALD--PGVPIVA-GNVVTAEGTRDLVEAGADIVK 294 (479)
T ss_pred hHHHHHHHHHH--hCCCEEEEeccCCccHHHHHHHHHHHHHC--CCCeEEe-eccCCHHHHHHHHHcCCCEEE
Confidence 34455555555 6799999998654 445577888998754 6766653 344567888899999999875
No 167
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=82.89 E-value=18 Score=27.40 Aligned_cols=69 Identities=6% Similarity=0.135 Sum_probs=51.5
Q ss_pred cCHHHHHHHHHhhCCCcc-EEEEcCC-C-CCC-CHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeC
Q 044790 7 ENGLQAWKILEDLMDQID-LVLTEVL-M-PCL-SGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVK 81 (162)
Q Consensus 7 ~~~~eal~~l~~~~~~~D-lvllD~~-m-p~~-~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~K 81 (162)
.+..+..+.+.+ . ++ ++++|+. + .+. .-+++++.|.+. ..+||++=..-...+.+.+++..|++..+.-
T Consensus 30 ~dp~~~a~~~~~--~-~~~l~ivDldga~~g~~~n~~~i~~i~~~---~~~pv~~gGGIrs~edv~~l~~~G~~~vivG 102 (228)
T PRK04128 30 GDPVEIALRFSE--Y-VDKIHVVDLDGAFEGKPKNLDVVKNIIRE---TGLKVQVGGGLRTYESIKDAYEIGVENVIIG 102 (228)
T ss_pred CCHHHHHHHHHH--h-CCEEEEEECcchhcCCcchHHHHHHHHhh---CCCCEEEcCCCCCHHHHHHHHHCCCCEEEEC
Confidence 377777788777 5 66 6777775 2 222 347788888764 4789998878888999999999999988763
No 168
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=82.76 E-value=9.8 Score=30.62 Aligned_cols=56 Identities=13% Similarity=0.117 Sum_probs=42.2
Q ss_pred ccEEEEcCCCCCCCH-HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeC
Q 044790 23 IDLVLTEVLMPCLSG-IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVK 81 (162)
Q Consensus 23 ~DlvllD~~mp~~~g-~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~K 81 (162)
.|+|++|..-..... ++.+++||+.. ..|+|+.-.-...+.+..++++||+.+..-
T Consensus 109 ~d~i~~D~ahg~s~~~~~~i~~i~~~~---p~~~vi~GnV~t~e~a~~l~~aGad~I~V~ 165 (321)
T TIGR01306 109 PEYITIDIAHGHSNSVINMIKHIKTHL---PDSFVIAGNVGTPEAVRELENAGADATKVG 165 (321)
T ss_pred CCEEEEeCccCchHHHHHHHHHHHHhC---CCCEEEEecCCCHHHHHHHHHcCcCEEEEC
Confidence 699999986655433 66788888743 456666665678899999999999998643
No 169
>PRK08185 hypothetical protein; Provisional
Probab=82.38 E-value=13 Score=29.37 Aligned_cols=67 Identities=16% Similarity=0.248 Sum_probs=52.1
Q ss_pred EcCHHHHHHHHHhhCCCccEEEEcCC----------CCCCCHHHHHHHHHccCCCCCCcEEEEecCC-CHHHHHHHHHcC
Q 044790 6 VENGLQAWKILEDLMDQIDLVLTEVL----------MPCLSGIGLLRKIMNHKTCKNIPVIMMSSHD-SMSIVFKCLSKG 74 (162)
Q Consensus 6 a~~~~eal~~l~~~~~~~DlvllD~~----------mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~-~~~~~~~a~~~G 74 (162)
.++.++|.+.++. ..+|.+-+.+- -|..+ +++++.|++. ..+|+++..+.. ..+...+|...|
T Consensus 148 ~t~peea~~f~~~--TgvD~LAvaiGt~HG~y~~~~kp~L~-~e~l~~I~~~---~~iPLVlHGgsg~~~e~~~~ai~~G 221 (283)
T PRK08185 148 YTDPEQAEDFVSR--TGVDTLAVAIGTAHGIYPKDKKPELQ-MDLLKEINER---VDIPLVLHGGSANPDAEIAESVQLG 221 (283)
T ss_pred CCCHHHHHHHHHh--hCCCEEEeccCcccCCcCCCCCCCcC-HHHHHHHHHh---hCCCEEEECCCCCCHHHHHHHHHCC
Confidence 6689999999988 78998888441 25556 8999999875 379999988764 566678899999
Q ss_pred CceE
Q 044790 75 AVYF 78 (162)
Q Consensus 75 a~~~ 78 (162)
+.-+
T Consensus 222 I~Ki 225 (283)
T PRK08185 222 VGKI 225 (283)
T ss_pred CeEE
Confidence 7765
No 170
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=82.15 E-value=10 Score=28.19 Aligned_cols=55 Identities=18% Similarity=0.207 Sum_probs=36.0
Q ss_pred HHHHHHHhhCCCccEEEEcCCC-----CCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHH
Q 044790 11 QAWKILEDLMDQIDLVLTEVLM-----PCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKC 70 (162)
Q Consensus 11 eal~~l~~~~~~~DlvllD~~m-----p~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a 70 (162)
.|.+.+.. ..+|+||+|=.. .-.+--+++..|+..+ .++.|| +|.+..+....+.
T Consensus 113 ~a~~~l~~--~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP--~~~~vI-iTGr~ap~~lie~ 172 (198)
T COG2109 113 HAKEALAD--GKYDLVILDELNYALRYGLLPLEEVVALLKARP--EHTHVI-ITGRGAPPELIEL 172 (198)
T ss_pred HHHHHHhC--CCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCC--CCcEEE-EECCCCCHHHHHH
Confidence 45556666 789999999532 2345567788888776 566666 6666666555443
No 171
>COG4999 Uncharacterized domain of BarA-like signal transduction histidine kinases [Signal transduction mechanisms]
Probab=82.08 E-value=3.1 Score=28.58 Aligned_cols=70 Identities=14% Similarity=0.208 Sum_probs=42.7
Q ss_pred CCccEEEEcCCCCCCCHHHHH-HHH-HccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHH
Q 044790 21 DQIDLVLTEVLMPCLSGIGLL-RKI-MNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLW 92 (162)
Q Consensus 21 ~~~DlvllD~~mp~~~g~~~~-~~i-r~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i 92 (162)
..||++|+.+-.+...-..+. .++ +.... .+--|+.+-+ ...-...+..+.|+.++|.||++...|+..+
T Consensus 50 ~hYD~~Ll~vavtfr~n~tm~~~~l~~Al~m-td~vilalPs-~~qv~AeqLkQ~g~~~CllKPls~~rLlptl 121 (140)
T COG4999 50 AHYDMMLLGVAVTFRENLTMQHERLAKALSM-TDFVILALPS-HAQVNAEQLKQDGAGACLLKPLSSTRLLPTL 121 (140)
T ss_pred hhhceeeecccccccCCchHHHHHHHHHHhh-hcceEEecCc-HHHHhHHHHhhcchHhHhhCcchhhhhHHHH
Confidence 468999999977655444332 122 22221 1222333332 2334456677889999999999999888743
No 172
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=82.05 E-value=14 Score=29.93 Aligned_cols=40 Identities=8% Similarity=0.193 Sum_probs=31.0
Q ss_pred HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeC
Q 044790 38 IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVK 81 (162)
Q Consensus 38 ~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~K 81 (162)
++.+++|+.. ..+|||+=.. ...+.+..+.+.|++.++.-
T Consensus 202 ~~~i~~l~~~---~~~PvivKgv-~~~~dA~~a~~~G~d~I~vs 241 (344)
T cd02922 202 WDDIKWLRKH---TKLPIVLKGV-QTVEDAVLAAEYGVDGIVLS 241 (344)
T ss_pred HHHHHHHHHh---cCCcEEEEcC-CCHHHHHHHHHcCCCEEEEE
Confidence 5667778764 3689887755 56888999999999998754
No 173
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=82.00 E-value=7.5 Score=28.86 Aligned_cols=65 Identities=14% Similarity=0.127 Sum_probs=45.4
Q ss_pred EEEEEcCHHHHHHHHHhhCCCccEEEEcCCC---CCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCc
Q 044790 2 AVIAVENGLQAWKILEDLMDQIDLVLTEVLM---PCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAV 76 (162)
Q Consensus 2 ~v~~a~~~~eal~~l~~~~~~~DlvllD~~m---p~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~ 76 (162)
.|.+..+.+++.+++.. ..|+|=+|... | ..-.++++.||.. . .++|..-...++...|.++|+|
T Consensus 47 ~V~ITPT~~ev~~l~~a---GadIIAlDaT~R~Rp-~~l~~li~~i~~~----~--~l~MADist~ee~~~A~~~G~D 114 (192)
T PF04131_consen 47 DVYITPTLKEVDALAEA---GADIIALDATDRPRP-ETLEELIREIKEK----Y--QLVMADISTLEEAINAAELGFD 114 (192)
T ss_dssp S--BS-SHHHHHHHHHC---T-SEEEEE-SSSS-S-S-HHHHHHHHHHC----T--SEEEEE-SSHHHHHHHHHTT-S
T ss_pred CeEECCCHHHHHHHHHc---CCCEEEEecCCCCCC-cCHHHHHHHHHHh----C--cEEeeecCCHHHHHHHHHcCCC
Confidence 35556677888777765 78999999864 6 7778888999874 2 6778888899999999999976
No 174
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=81.81 E-value=11 Score=28.63 Aligned_cols=66 Identities=17% Similarity=0.112 Sum_probs=48.7
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCCCCC-CHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLMPCL-SGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~mp~~-~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
+..++++++++ ..-.+|++|+.--++ .|+. .+.+.. +.+|||.-..-...+++.++...|+++.+.
T Consensus 144 ~~~~~~~~~~~--~~~~ii~t~i~~dGt~~G~d---~l~~~~--~~~pviasGGv~~~~Dl~~l~~~g~~gviv 210 (228)
T PRK04128 144 KVEDAYEMLKN--YVNRFIYTSIERDGTLTGIE---EIERFW--GDEEFIYAGGVSSAEDVKKLAEIGFSGVII 210 (228)
T ss_pred CHHHHHHHHHH--HhCEEEEEeccchhcccCHH---HHHHhc--CCCCEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence 45677777776 434689999977664 6766 332221 478999999999999999999999998764
No 175
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=81.73 E-value=23 Score=27.93 Aligned_cols=67 Identities=15% Similarity=0.131 Sum_probs=47.5
Q ss_pred EEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceE
Q 044790 4 IAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYF 78 (162)
Q Consensus 4 ~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~ 78 (162)
+.+++.+++.+.+.. .+|+|++|-+-| .++-+.++.. ....-.++-.|+.-..+.+....+.|+|-+
T Consensus 193 VEvesle~~~eAl~a---gaDiImLDNm~~----e~~~~av~~l-~~~~~~~lEaSGgIt~~ni~~yA~tGVD~I 259 (280)
T COG0157 193 VEVESLEEAEEALEA---GADIIMLDNMSP----EELKEAVKLL-GLAGRALLEASGGITLENIREYAETGVDVI 259 (280)
T ss_pred EEcCCHHHHHHHHHc---CCCEEEecCCCH----HHHHHHHHHh-ccCCceEEEEeCCCCHHHHHHHhhcCCCEE
Confidence 478899999998886 799999995444 3333333221 113455777888889999999889999855
No 176
>TIGR00642 mmCoA_mut_beta methylmalonyl-CoA mutase, heterodimeric type, beta chain. The adenosylcobalamin-binding, catalytic chain of methylmalonyl-CoA mutase may form homodimers, as in mitochondrion and E. coli, or heterodimers with a shorter, homologous chain that does not bind adenosylcobalamin. This model describes this non-catalytic beta chain, as found in the enzyme from Propionibacterium freudenreichii, for which the 3-dimensional structure has been solved.
Probab=81.70 E-value=21 Score=31.44 Aligned_cols=83 Identities=2% Similarity=-0.102 Sum_probs=57.3
Q ss_pred EcCHHHHHHHHHhhCCCccEEEEcCCCCC--CCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCC
Q 044790 6 VENGLQAWKILEDLMDQIDLVLTEVLMPC--LSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPI 83 (162)
Q Consensus 6 a~~~~eal~~l~~~~~~~DlvllD~~mp~--~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~ 83 (162)
+.+.+++.+.... ...+++++...-.. -.+-++++.||... ...|++.+.... .......|+|+||.--.
T Consensus 532 ~~~~~~~~~a~~~--sga~i~viCssD~~Y~~~a~~~~~al~~ag----~~~v~lAG~p~~--~~~~~~aGvd~fi~~g~ 603 (619)
T TIGR00642 532 GTTAEIVVEAFKK--AGAQVAVLCSSDKVYAQQGLEVAKALKAAG----AKALYLAGAFKE--FGDDAAEAIDGRLFMKM 603 (619)
T ss_pred CCCHHHHHHHHHh--cCCCEEEEeCCCcchHHHHHHHHHHHHhCC----CCEEEEeCCCcc--hhhHHhcCCcceeEcCC
Confidence 3566777777777 67787777654433 35667889998754 236667776543 33467889999999988
Q ss_pred CHHHHHHHHHHHH
Q 044790 84 RKNELQNLWQHVW 96 (162)
Q Consensus 84 ~~~~L~~~i~~~l 96 (162)
+.-+++..+++.+
T Consensus 604 d~~~~L~~~~~~~ 616 (619)
T TIGR00642 604 NVVDTLSSTLDIL 616 (619)
T ss_pred cHHHHHHHHHHHh
Confidence 8877777666543
No 177
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=81.60 E-value=8.2 Score=29.80 Aligned_cols=67 Identities=19% Similarity=0.223 Sum_probs=48.6
Q ss_pred CHHHHHHHHHhhCCCcc-EEEEcCCCCCC-C--HHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHH-HcCCceEE
Q 044790 8 NGLQAWKILEDLMDQID-LVLTEVLMPCL-S--GIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCL-SKGAVYFL 79 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~D-lvllD~~mp~~-~--g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~-~~Ga~~~l 79 (162)
+..+..+.+.+ ..++ +++.|+.--++ . -+++++.+++. ..+|||.-..-...+.+.+++ ..|+++.+
T Consensus 153 ~~~e~~~~~~~--~g~~~ii~~~i~~~G~~~G~d~~~i~~~~~~---~~ipvIasGGv~s~eD~~~l~~~~GvdgVi 224 (258)
T PRK01033 153 DPLELAKEYEA--LGAGEILLNSIDRDGTMKGYDLELLKSFRNA---LKIPLIALGGAGSLDDIVEAILNLGADAAA 224 (258)
T ss_pred CHHHHHHHHHH--cCCCEEEEEccCCCCCcCCCCHHHHHHHHhh---CCCCEEEeCCCCCHHHHHHHHHHCCCCEEE
Confidence 35566676766 5555 77777753321 2 36778888764 579999999999999999999 78999774
No 178
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=81.57 E-value=13 Score=31.70 Aligned_cols=56 Identities=11% Similarity=0.153 Sum_probs=40.8
Q ss_pred CCccEEEEcCCCCCCC-HHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEE
Q 044790 21 DQIDLVLTEVLMPCLS-GIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFL 79 (162)
Q Consensus 21 ~~~DlvllD~~mp~~~-g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l 79 (162)
...|+|.+|..-.... -++.+++||+.. +.++|++ ..-...+.+..+.++||+.+.
T Consensus 252 ag~d~i~id~a~G~s~~~~~~i~~ik~~~--~~~~v~a-G~V~t~~~a~~~~~aGad~I~ 308 (495)
T PTZ00314 252 AGVDVLVVDSSQGNSIYQIDMIKKLKSNY--PHVDIIA-GNVVTADQAKNLIDAGADGLR 308 (495)
T ss_pred CCCCEEEEecCCCCchHHHHHHHHHHhhC--CCceEEE-CCcCCHHHHHHHHHcCCCEEE
Confidence 5799999998533222 268899998753 6676665 344567888999999999874
No 179
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=81.42 E-value=12 Score=27.22 Aligned_cols=58 Identities=9% Similarity=0.097 Sum_probs=42.2
Q ss_pred HHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHHH
Q 044790 37 GIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVWR 97 (162)
Q Consensus 37 g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 97 (162)
-.++++.+|+.. +..+.|.+ .....+...++++.|++....--++++++.+.++.+..
T Consensus 66 i~~av~~~~~~~--~~~~~I~V-Ev~~~ee~~ea~~~g~d~I~lD~~~~~~~~~~v~~l~~ 123 (169)
T PF01729_consen 66 IEEAVKAARQAA--PEKKKIEV-EVENLEEAEEALEAGADIIMLDNMSPEDLKEAVEELRE 123 (169)
T ss_dssp HHHHHHHHHHHS--TTTSEEEE-EESSHHHHHHHHHTT-SEEEEES-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--CCCceEEE-EcCCHHHHHHHHHhCCCEEEecCcCHHHHHHHHHHHhh
Confidence 356778888765 55553333 33457889999999999999999999999999997743
No 180
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=81.41 E-value=21 Score=27.85 Aligned_cols=57 Identities=18% Similarity=0.185 Sum_probs=47.5
Q ss_pred HHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEE-----eCCCCHHHHHHHHHHHHHh
Q 044790 39 GLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFL-----VKPIRKNELQNLWQHVWRK 98 (162)
Q Consensus 39 ~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l-----~KP~~~~~L~~~i~~~l~~ 98 (162)
..++.|++. +.+|||+-.+-..++++..+++.|+++.+ .|--++.++...++..+.-
T Consensus 179 ~~l~~i~e~---~~vpVivdAGIgt~sDa~~AmElGaDgVL~nSaIakA~dP~~mA~a~~~AV~A 240 (267)
T CHL00162 179 LNLQIIIEN---AKIPVIIDAGIGTPSEASQAMELGASGVLLNTAVAQAKNPEQMAKAMKLAVQA 240 (267)
T ss_pred HHHHHHHHc---CCCcEEEeCCcCCHHHHHHHHHcCCCEEeecceeecCCCHHHHHHHHHHHHHH
Confidence 467777765 47999999999999999999999999885 4677888998888877664
No 181
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=81.33 E-value=19 Score=26.38 Aligned_cols=80 Identities=18% Similarity=0.264 Sum_probs=50.0
Q ss_pred HHHHHHHHHhhCCCccEEEEcC----CCCC-CCHHHHHHHHHccCCCCCCcE-EEEecCCCHHHHHHHHHcCCceEEeCC
Q 044790 9 GLQAWKILEDLMDQIDLVLTEV----LMPC-LSGIGLLRKIMNHKTCKNIPV-IMMSSHDSMSIVFKCLSKGAVYFLVKP 82 (162)
Q Consensus 9 ~~eal~~l~~~~~~~DlvllD~----~mp~-~~g~~~~~~ir~~~~~~~~pi-I~lt~~~~~~~~~~a~~~Ga~~~l~KP 82 (162)
..+.++.+.+ ...|.|=+|+ ..|. .-+++.+++|++. ...|+ +.+........+..+.+.|+++++.-.
T Consensus 13 ~~~~~~~~~~--~g~d~i~~~~~Dg~~~~~~~~~~~~v~~i~~~---~~~~v~v~lm~~~~~~~~~~~~~~gadgv~vh~ 87 (210)
T TIGR01163 13 LGEEVKAVEE--AGADWIHVDVMDGHFVPNLTFGPPVLEALRKY---TDLPIDVHLMVENPDRYIEDFAEAGADIITVHP 87 (210)
T ss_pred HHHHHHHHHH--cCCCEEEEcCCCCCCCCCcccCHHHHHHHHhc---CCCcEEEEeeeCCHHHHHHHHHHcCCCEEEEcc
Confidence 3455566666 5677766652 1122 3678889999864 34565 324444566778888899999987766
Q ss_pred CCHHHHHHHHH
Q 044790 83 IRKNELQNLWQ 93 (162)
Q Consensus 83 ~~~~~L~~~i~ 93 (162)
...++....++
T Consensus 88 ~~~~~~~~~~~ 98 (210)
T TIGR01163 88 EASEHIHRLLQ 98 (210)
T ss_pred CCchhHHHHHH
Confidence 55555544443
No 182
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=81.07 E-value=14 Score=28.43 Aligned_cols=70 Identities=16% Similarity=0.195 Sum_probs=52.3
Q ss_pred cCHHHHHHHHHhhCCCc-cEEEEcCCCCCC---CHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeC
Q 044790 7 ENGLQAWKILEDLMDQI-DLVLTEVLMPCL---SGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVK 81 (162)
Q Consensus 7 ~~~~eal~~l~~~~~~~-DlvllD~~mp~~---~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~K 81 (162)
.+..+..+.+.. ..+ .+++.|+.-.+. .-+++++.|++. ..+||++-..-...+.+.+++..|++..+.-
T Consensus 30 ~dp~~~a~~~~~--~G~~~l~v~Dl~~~~~~~~~n~~~i~~i~~~---~~~pv~~~GGi~s~~d~~~~~~~Ga~~vivg 103 (254)
T TIGR00735 30 GDPVELAQRYDE--EGADELVFLDITASSEGRTTMIDVVERTAET---VFIPLTVGGGIKSIEDVDKLLRAGADKVSIN 103 (254)
T ss_pred CCHHHHHHHHHH--cCCCEEEEEcCCcccccChhhHHHHHHHHHh---cCCCEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 477777787776 555 477778875432 235567777654 3689999999999999999999999988754
No 183
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=80.91 E-value=21 Score=26.71 Aligned_cols=70 Identities=19% Similarity=0.151 Sum_probs=48.9
Q ss_pred EcCHHHHHHHHHhhCCCccEEEEcCCCCC-------CCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceE
Q 044790 6 VENGLQAWKILEDLMDQIDLVLTEVLMPC-------LSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYF 78 (162)
Q Consensus 6 a~~~~eal~~l~~~~~~~DlvllD~~mp~-------~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~ 78 (162)
+.+..++.+ +.+ ...|.|+++-.-++ ...+++++++++. ..+||++.-.-...+.+.+++..|++++
T Consensus 109 v~~~~~~~~-~~~--~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~---~~~Pvi~~GGI~~~~~v~~~l~~GadgV 182 (236)
T cd04730 109 VTSVEEARK-AEA--AGADALVAQGAEAGGHRGTFDIGTFALVPEVRDA---VDIPVIAAGGIADGRGIAAALALGADGV 182 (236)
T ss_pred CCCHHHHHH-HHH--cCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHH---hCCCEEEECCCCCHHHHHHHHHcCCcEE
Confidence 345555544 444 46898887542111 2457788888764 3689998888777788999999999988
Q ss_pred EeC
Q 044790 79 LVK 81 (162)
Q Consensus 79 l~K 81 (162)
+.-
T Consensus 183 ~vg 185 (236)
T cd04730 183 QMG 185 (236)
T ss_pred EEc
Confidence 654
No 184
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=80.88 E-value=22 Score=26.85 Aligned_cols=67 Identities=24% Similarity=0.159 Sum_probs=53.1
Q ss_pred EEcCHHHHHHHHHhhCCCccEEEEcCC-------CCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCce
Q 044790 5 AVENGLQAWKILEDLMDQIDLVLTEVL-------MPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVY 77 (162)
Q Consensus 5 ~a~~~~eal~~l~~~~~~~DlvllD~~-------mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~ 77 (162)
.+++.+|+.+..+. .+|.|.+.-. ++...|++.++++++.. .+|++.+.+- +.+.+.+.++.|+++
T Consensus 110 S~h~~eea~~A~~~---g~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~~---~iP~vAIGGi-~~~nv~~v~~~Ga~g 182 (211)
T COG0352 110 STHDLEEALEAEEL---GADYVGLGPIFPTSTKPDAPPLGLEGLREIRELV---NIPVVAIGGI-NLENVPEVLEAGADG 182 (211)
T ss_pred ecCCHHHHHHHHhc---CCCEEEECCcCCCCCCCCCCccCHHHHHHHHHhC---CCCEEEEcCC-CHHHHHHHHHhCCCe
Confidence 56678888776654 5999998763 44678999999998764 4999988875 677789999999998
Q ss_pred E
Q 044790 78 F 78 (162)
Q Consensus 78 ~ 78 (162)
.
T Consensus 183 V 183 (211)
T COG0352 183 V 183 (211)
T ss_pred E
Confidence 7
No 185
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=80.86 E-value=23 Score=28.24 Aligned_cols=68 Identities=12% Similarity=0.155 Sum_probs=48.2
Q ss_pred EEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 3 VIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 3 v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
.+.+++.+++.+.++. .+|+|++|-.-| -++-+.++... . -.+|..++.-..+.+.+..+.|+|-+..
T Consensus 212 eVEv~sleea~ea~~~---gaDiI~LDn~s~----e~~~~av~~~~--~-~~~ieaSGGI~~~ni~~yA~tGVD~Is~ 279 (296)
T PRK09016 212 EVEVENLDELDQALKA---GADIIMLDNFTT----EQMREAVKRTN--G-RALLEVSGNVTLETLREFAETGVDFISV 279 (296)
T ss_pred EEEeCCHHHHHHHHHc---CCCEEEeCCCCh----HHHHHHHHhhc--C-CeEEEEECCCCHHHHHHHHhcCCCEEEe
Confidence 3578899999999886 689999996544 23333443322 2 2366777778889999999999986643
No 186
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=80.67 E-value=9.5 Score=25.52 Aligned_cols=73 Identities=16% Similarity=0.120 Sum_probs=45.1
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCC--HHHHHHHHHHHHHh
Q 044790 21 DQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIR--KNELQNLWQHVWRK 98 (162)
Q Consensus 21 ~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~--~~~L~~~i~~~l~~ 98 (162)
-...+|++-. .+| ...+.|-+.. |.+||+++|.... -...-.+-.|+..++.++.. .+++.....+.+..
T Consensus 15 ~~ak~Ivv~T----~sG-~ta~~isk~R--P~~pIiavt~~~~-~~r~l~l~~GV~p~~~~~~~~~~~~~~~~a~~~~~~ 86 (117)
T PF02887_consen 15 LNAKAIVVFT----ESG-RTARLISKYR--PKVPIIAVTPNES-VARQLSLYWGVYPVLIEEFDKDTEELIAEALEYAKE 86 (117)
T ss_dssp HTESEEEEE-----SSS-HHHHHHHHT---TSSEEEEEESSHH-HHHHGGGSTTEEEEECSSHSHSHHHHHHHHHHHHHH
T ss_pred cCCCEEEEEC----CCc-hHHHHHHhhC--CCCeEEEEcCcHH-HHhhhhcccceEEEEeccccccHHHHHHHHHHHHHH
Confidence 3456666653 233 4455554443 7899999997532 22334566799998887755 67777777666665
Q ss_pred ccC
Q 044790 99 CHS 101 (162)
Q Consensus 99 ~~~ 101 (162)
...
T Consensus 87 ~g~ 89 (117)
T PF02887_consen 87 RGL 89 (117)
T ss_dssp TTS
T ss_pred cCC
Confidence 544
No 187
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=80.32 E-value=26 Score=27.40 Aligned_cols=59 Identities=17% Similarity=0.194 Sum_probs=42.4
Q ss_pred HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceE------EeCCCCHHHHHHHHHHHHHhc
Q 044790 38 IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYF------LVKPIRKNELQNLWQHVWRKC 99 (162)
Q Consensus 38 ~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~------l~KP~~~~~L~~~i~~~l~~~ 99 (162)
+++++.+++. ..+|||....-.+.+.+.+++..||+.. +.-|.-..++..-+.+.+.+.
T Consensus 220 ~~~i~~i~~~---~~ipii~~GGI~~~~da~~~l~~GAd~V~igra~l~~p~~~~~i~~~l~~~~~~~ 284 (296)
T cd04740 220 LRMVYQVYKA---VEIPIIGVGGIASGEDALEFLMAGASAVQVGTANFVDPEAFKEIIEGLEAYLDEE 284 (296)
T ss_pred HHHHHHHHHh---cCCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhhcChHHHHHHHHHHHHHHHHc
Confidence 4777787764 3799999999889999999999999865 233544555555555555543
No 188
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=80.19 E-value=15 Score=27.24 Aligned_cols=71 Identities=11% Similarity=0.007 Sum_probs=48.3
Q ss_pred EEcCHHHHHHHHHhhCCCccEEEEcC---CCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 5 AVENGLQAWKILEDLMDQIDLVLTEV---LMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 5 ~a~~~~eal~~l~~~~~~~DlvllD~---~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
.+++..++.+.. + ..+|.+.+-- ... ..++++++.+++.- ...+|++....-...+.+.++++.|+++++.
T Consensus 127 ~v~~~~e~~~~~-~--~g~~~i~~t~~~~~~~-~~~~~~~~~l~~~~-~~~~pvia~gGI~s~edi~~~~~~Ga~gviv 200 (217)
T cd00331 127 EVHDEEELERAL-A--LGAKIIGINNRDLKTF-EVDLNTTERLAPLI-PKDVILVSESGISTPEDVKRLAEAGADAVLI 200 (217)
T ss_pred EECCHHHHHHHH-H--cCCCEEEEeCCCcccc-CcCHHHHHHHHHhC-CCCCEEEEEcCCCCHHHHHHHHHcCCCEEEE
Confidence 456676655544 3 4688876641 111 12356777776531 0368999999988889999999999999964
No 189
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=80.15 E-value=20 Score=26.08 Aligned_cols=71 Identities=18% Similarity=0.089 Sum_probs=47.9
Q ss_pred EEEcCHHHHHHHHHhhCCCccEEEEcCC-----CCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceE
Q 044790 4 IAVENGLQAWKILEDLMDQIDLVLTEVL-----MPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYF 78 (162)
Q Consensus 4 ~~a~~~~eal~~l~~~~~~~DlvllD~~-----mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~ 78 (162)
..+.+..++++ +.. ...|.|.+... .....+.+.++.+++. .++||++.-.- ..+.+.++++.|++.+
T Consensus 111 ~~~~t~~e~~~-~~~--~~~d~v~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~i~~~GGI-~~~~i~~~~~~Gad~v 183 (202)
T cd04726 111 IGVEDPEKRAK-LLK--LGVDIVILHRGIDAQAAGGWWPEDDLKKVKKL---LGVKVAVAGGI-TPDTLPEFKKAGADIV 183 (202)
T ss_pred eCCCCHHHHHH-HHH--CCCCEEEEcCcccccccCCCCCHHHHHHHHhh---cCCCEEEECCc-CHHHHHHHHhcCCCEE
Confidence 34557777777 343 57898887521 1123456777777754 46788766665 5888999999999988
Q ss_pred EeC
Q 044790 79 LVK 81 (162)
Q Consensus 79 l~K 81 (162)
+.=
T Consensus 184 vvG 186 (202)
T cd04726 184 IVG 186 (202)
T ss_pred EEe
Confidence 643
No 190
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=80.07 E-value=2 Score=31.59 Aligned_cols=47 Identities=13% Similarity=0.253 Sum_probs=29.4
Q ss_pred HHHHHHHhhCCCccEEEEcCCCC-CC-----CHHHHHHHHHccCCCCCCcEEEEecC
Q 044790 11 QAWKILEDLMDQIDLVLTEVLMP-CL-----SGIGLLRKIMNHKTCKNIPVIMMSSH 61 (162)
Q Consensus 11 eal~~l~~~~~~~DlvllD~~mp-~~-----~g~~~~~~ir~~~~~~~~piI~lt~~ 61 (162)
+..+.+.+ -+.|++++|+..- .. .-..|++.||+.+ |.+|||+++..
T Consensus 50 ~~a~~ia~--~~a~~~~ld~~~N~~~~~~~~~~~~fv~~iR~~h--P~tPIllv~~~ 102 (178)
T PF14606_consen 50 EVADLIAE--IDADLIVLDCGPNMSPEEFRERLDGFVKTIREAH--PDTPILLVSPI 102 (178)
T ss_dssp HHHHHHHH--S--SEEEEEESHHCCTTTHHHHHHHHHHHHHTT---SSS-EEEEE--
T ss_pred HHHHHHhc--CCCCEEEEEeecCCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEecC
Confidence 44566777 6779999998532 11 1234788889887 89999999953
No 191
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=79.25 E-value=14 Score=29.88 Aligned_cols=60 Identities=17% Similarity=0.291 Sum_probs=43.3
Q ss_pred HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceE------EeC-CCCHHHHHHHHHHHHHh
Q 044790 38 IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYF------LVK-PIRKNELQNLWQHVWRK 98 (162)
Q Consensus 38 ~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~------l~K-P~~~~~L~~~i~~~l~~ 98 (162)
++.++.+++.- ...+|||.+..-.+.+.+.+.+..||+.+ +.+ |.-..++..-|..++.+
T Consensus 276 l~~v~~l~~~~-~~~ipIig~GGI~s~eda~e~l~aGAd~V~v~~~~~~~gP~~~~~i~~~L~~~l~~ 342 (344)
T PRK05286 276 TEVIRRLYKEL-GGRLPIIGVGGIDSAEDAYEKIRAGASLVQIYSGLIYEGPGLVKEIVRGLARLLRR 342 (344)
T ss_pred HHHHHHHHHHh-CCCCCEEEECCCCCHHHHHHHHHcCCCHHHHHHHHHHhCchHHHHHHHHHHHHHHh
Confidence 44666666532 13699999999999999999999999854 444 66666666666666554
No 192
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=79.21 E-value=22 Score=26.07 Aligned_cols=66 Identities=11% Similarity=0.143 Sum_probs=47.9
Q ss_pred EcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceE
Q 044790 6 VENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYF 78 (162)
Q Consensus 6 a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~ 78 (162)
+.+..|+.+..+. .+|.|-+ .--+..-|.+.++.++..- +.+|++.+.+- ..+.+...++.|++.+
T Consensus 112 ~~t~~e~~~A~~~---Gadyv~~-Fpt~~~~G~~~l~~~~~~~--~~ipvvaiGGI-~~~n~~~~l~aGa~~v 177 (187)
T PRK07455 112 ALTPTEIVTAWQA---GASCVKV-FPVQAVGGADYIKSLQGPL--GHIPLIPTGGV-TLENAQAFIQAGAIAV 177 (187)
T ss_pred cCCHHHHHHHHHC---CCCEEEE-CcCCcccCHHHHHHHHhhC--CCCcEEEeCCC-CHHHHHHHHHCCCeEE
Confidence 5677787666653 6788876 2222245789999998753 67998877664 6788899999999876
No 193
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=79.07 E-value=9.3 Score=28.64 Aligned_cols=68 Identities=16% Similarity=0.159 Sum_probs=48.3
Q ss_pred CHHHHHHHHHhhCCCccE-EEEcCCCCCC---CHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 8 NGLQAWKILEDLMDQIDL-VLTEVLMPCL---SGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~Dl-vllD~~mp~~---~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
+..+.++.+.+ ..++- ++.++..-++ .-+++++.+++. ..+||+.-..-...+.+.++++.|+++++.
T Consensus 147 ~~~~~~~~~~~--~ga~~iii~~~~~~g~~~g~~~~~i~~i~~~---~~ipvi~~GGi~~~~di~~~~~~Ga~gv~v 218 (234)
T cd04732 147 SLEELAKRFEE--LGVKAIIYTDISRDGTLSGPNFELYKELAAA---TGIPVIASGGVSSLDDIKALKELGVAGVIV 218 (234)
T ss_pred CHHHHHHHHHH--cCCCEEEEEeecCCCccCCCCHHHHHHHHHh---cCCCEEEecCCCCHHHHHHHHHCCCCEEEE
Confidence 44566666666 55664 4566643221 237788888764 378999999888899999999999999864
No 194
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=78.99 E-value=13 Score=27.23 Aligned_cols=53 Identities=19% Similarity=0.258 Sum_probs=34.3
Q ss_pred HHHHHhhCCCccEEEEcCCC-----CCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHH
Q 044790 13 WKILEDLMDQIDLVLTEVLM-----PCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKC 70 (162)
Q Consensus 13 l~~l~~~~~~~DlvllD~~m-----p~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a 70 (162)
.+.+.. ..+|+||+|=.+ .-.+--++++.|+..+ +.+-|| +|++..+....+.
T Consensus 90 ~~~l~~--~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp--~~~evV-lTGR~~p~~l~e~ 147 (173)
T TIGR00708 90 KEMLAD--PELDLVLLDELTYALKYGYLDVEEVVEALQERP--GHQHVI-ITGRGCPQDLLEL 147 (173)
T ss_pred HHHHhc--CCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCC--CCCEEE-EECCCCCHHHHHh
Confidence 334444 689999999643 2345557888888766 566555 6776666655443
No 195
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=78.84 E-value=16 Score=26.26 Aligned_cols=47 Identities=9% Similarity=0.216 Sum_probs=31.1
Q ss_pred CCccEEEEcCCCC-----CCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHH
Q 044790 21 DQIDLVLTEVLMP-----CLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKC 70 (162)
Q Consensus 21 ~~~DlvllD~~mp-----~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a 70 (162)
..+|+||+|=.+. -.+--++++.|+..+ ..+-|| +|++..++...+.
T Consensus 94 ~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp--~~~evI-lTGr~~p~~l~e~ 145 (159)
T cd00561 94 GEYDLVILDEINYALGYGLLDVEEVVDLLKAKP--EDLELV-LTGRNAPKELIEA 145 (159)
T ss_pred CCCCEEEEechHhHhhCCCCCHHHHHHHHHcCC--CCCEEE-EECCCCCHHHHHh
Confidence 6899999986432 244557888888776 556555 6666666555443
No 196
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=78.82 E-value=21 Score=28.65 Aligned_cols=72 Identities=19% Similarity=0.155 Sum_probs=49.4
Q ss_pred EEEEcCHHHHHHHHHhhCCCccEEEEc-CCCC-----CC-CHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCC
Q 044790 3 VIAVENGLQAWKILEDLMDQIDLVLTE-VLMP-----CL-SGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGA 75 (162)
Q Consensus 3 v~~a~~~~eal~~l~~~~~~~DlvllD-~~mp-----~~-~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga 75 (162)
+..+.+.++|...++. .+|+|++- ..-. .. .-+.++..++.. ..+|||.--.-.+...+..++.+||
T Consensus 140 ~~~v~s~~~A~~a~~~---G~D~iv~qG~eAGGH~g~~~~~~~~L~~~v~~~---~~iPViaAGGI~dg~~iaaal~lGA 213 (330)
T PF03060_consen 140 IPQVTSVREARKAAKA---GADAIVAQGPEAGGHRGFEVGSTFSLLPQVRDA---VDIPVIAAGGIADGRGIAAALALGA 213 (330)
T ss_dssp EEEESSHHHHHHHHHT---T-SEEEEE-TTSSEE---SSG-HHHHHHHHHHH----SS-EEEESS--SHHHHHHHHHCT-
T ss_pred ccccCCHHHHHHhhhc---CCCEEEEeccccCCCCCccccceeeHHHHHhhh---cCCcEEEecCcCCHHHHHHHHHcCC
Confidence 4578899999877665 68998874 3221 22 246677787765 3699999988889999999999999
Q ss_pred ceEEe
Q 044790 76 VYFLV 80 (162)
Q Consensus 76 ~~~l~ 80 (162)
++...
T Consensus 214 ~gV~~ 218 (330)
T PF03060_consen 214 DGVQM 218 (330)
T ss_dssp SEEEE
T ss_pred CEeec
Confidence 99864
No 197
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=78.56 E-value=13 Score=28.66 Aligned_cols=63 Identities=17% Similarity=0.300 Sum_probs=43.5
Q ss_pred HHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCC
Q 044790 16 LEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIR 84 (162)
Q Consensus 16 l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~ 84 (162)
++. +.||++|+=.--|..-|-.-.|.+-.. ..+|.|+++....... .++++..-.+||.-+.+
T Consensus 56 ~~~--~~pDf~i~isPN~a~PGP~~ARE~l~~---~~iP~IvI~D~p~~K~-~d~l~~~g~GYIivk~D 118 (277)
T PRK00994 56 LEE--WKPDFVIVISPNPAAPGPKKAREILKA---AGIPCIVIGDAPGKKV-KDAMEEQGLGYIIVKAD 118 (277)
T ss_pred HHh--hCCCEEEEECCCCCCCCchHHHHHHHh---cCCCEEEEcCCCccch-HHHHHhcCCcEEEEecC
Confidence 356 899999987666666666667776554 4789999998665554 37777666667554433
No 198
>COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only]
Probab=78.56 E-value=17 Score=27.38 Aligned_cols=72 Identities=24% Similarity=0.220 Sum_probs=52.6
Q ss_pred EcCHHHHHHHHHhhCCCccEEEEcCCCCC-CCH--HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeC
Q 044790 6 VENGLQAWKILEDLMDQIDLVLTEVLMPC-LSG--IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVK 81 (162)
Q Consensus 6 a~~~~eal~~l~~~~~~~DlvllD~~mp~-~~g--~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~K 81 (162)
..++.+.+..+... ..+++|++|+.--+ +.| ++++..+... ..-||++=..-...+....+...|+.+.|.-
T Consensus 136 ~ed~le~Vk~l~~~-~~~~lIvLDi~aVGt~~G~~~E~l~~~~~~---s~~pVllGGGV~g~Edlel~~~~Gv~gvLva 210 (229)
T COG1411 136 LEDFLETVKDLNYR-RDPGLIVLDIGAVGTKSGPDYELLTKVLEL---SEHPVLLGGGVGGMEDLELLLGMGVSGVLVA 210 (229)
T ss_pred chhHHHHHHHHhcc-CCCCeEEEEccccccccCCCHHHHHHHHHh---ccCceeecCCcCcHHHHHHHhcCCCceeeeh
Confidence 34556666666542 46999999996533 333 6788888764 3668888778888888999999999999864
No 199
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=78.39 E-value=24 Score=27.80 Aligned_cols=67 Identities=12% Similarity=0.111 Sum_probs=46.6
Q ss_pred EEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 4 IAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 4 ~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
+.+++.+++.+... ..+|.|.+|- -|.+.++++.+... ..+|+. .++.-..+.+.+..+.|++.+-.
T Consensus 193 vsv~tleea~~A~~---~gaDyI~lD~-----~~~e~l~~~~~~~~-~~i~i~-AiGGIt~~ni~~~a~~Gvd~IAv 259 (277)
T PRK08072 193 VETETEEQVREAVA---AGADIIMFDN-----RTPDEIREFVKLVP-SAIVTE-ASGGITLENLPAYGGTGVDYISL 259 (277)
T ss_pred EEeCCHHHHHHHHH---cCCCEEEECC-----CCHHHHHHHHHhcC-CCceEE-EECCCCHHHHHHHHHcCCCEEEE
Confidence 47788999888765 4789999973 35566777665321 234433 44456788889999999998743
No 200
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=78.39 E-value=26 Score=26.36 Aligned_cols=85 Identities=13% Similarity=0.149 Sum_probs=54.5
Q ss_pred EEEEcCHHHHHHHHHhhC-CCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeC
Q 044790 3 VIAVENGLQAWKILEDLM-DQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVK 81 (162)
Q Consensus 3 v~~a~~~~eal~~l~~~~-~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~K 81 (162)
|....+.+++++..+... ..+++|=+- +-...+++.++.+++.. +++ +|-.-.--+.+....++++|++=.++.
T Consensus 20 V~r~~~~~~a~~i~~al~~~Gi~~iEit--l~~~~~~~~I~~l~~~~--p~~-~IGAGTVl~~~~a~~a~~aGA~FivsP 94 (212)
T PRK05718 20 VIVINKLEDAVPLAKALVAGGLPVLEVT--LRTPAALEAIRLIAKEV--PEA-LIGAGTVLNPEQLAQAIEAGAQFIVSP 94 (212)
T ss_pred EEEcCCHHHHHHHHHHHHHcCCCEEEEe--cCCccHHHHHHHHHHHC--CCC-EEEEeeccCHHHHHHHHHcCCCEEECC
Confidence 445567777777765431 346655444 44457999999998754 553 333444456788999999999866655
Q ss_pred CCCHHHHHHHHH
Q 044790 82 PIRKNELQNLWQ 93 (162)
Q Consensus 82 P~~~~~L~~~i~ 93 (162)
-++. ++.+..+
T Consensus 95 ~~~~-~vi~~a~ 105 (212)
T PRK05718 95 GLTP-PLLKAAQ 105 (212)
T ss_pred CCCH-HHHHHHH
Confidence 5666 5554444
No 201
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=78.36 E-value=28 Score=29.57 Aligned_cols=87 Identities=17% Similarity=0.187 Sum_probs=56.7
Q ss_pred EEcCHHHHHHHHHhhCCCccEEEEcCCCCC-------CCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCc-
Q 044790 5 AVENGLQAWKILEDLMDQIDLVLTEVLMPC-------LSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAV- 76 (162)
Q Consensus 5 ~a~~~~eal~~l~~~~~~~DlvllD~~mp~-------~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~- 76 (162)
.+++..++.+..+ ..+|.|.+.-.-|- .-|++.++++... ..+||+.+..- ..+.+.++++.|++
T Consensus 396 S~h~~~e~~~a~~---~gadyi~~gpif~t~tk~~~~~~g~~~~~~~~~~---~~~Pv~aiGGI-~~~~~~~~~~~G~~~ 468 (502)
T PLN02898 396 SCKTPEQAEQAWK---DGADYIGCGGVFPTNTKANNKTIGLDGLREVCEA---SKLPVVAIGGI-SASNAASVMESGAPN 468 (502)
T ss_pred eCCCHHHHHHHhh---cCCCEEEECCeecCCCCCCCCCCCHHHHHHHHHc---CCCCEEEECCC-CHHHHHHHHHcCCCc
Confidence 4567777655543 47899886443322 1268888888654 47999988765 57778899999988
Q ss_pred --eE-----EeCCCCHHHHHHHHHHHHHh
Q 044790 77 --YF-----LVKPIRKNELQNLWQHVWRK 98 (162)
Q Consensus 77 --~~-----l~KP~~~~~L~~~i~~~l~~ 98 (162)
++ |.+.-++.+....+.+.+.+
T Consensus 469 ~~gvav~~~i~~~~d~~~~~~~~~~~~~~ 497 (502)
T PLN02898 469 LKGVAVVSALFDQEDVLKATRKLHAILTE 497 (502)
T ss_pred CceEEEEeHHhcCCCHHHHHHHHHHHHHH
Confidence 54 33444555555555555444
No 202
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=78.14 E-value=14 Score=27.16 Aligned_cols=53 Identities=11% Similarity=0.243 Sum_probs=34.6
Q ss_pred HHHHHHhhCCCccEEEEcCCC-----CCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHH
Q 044790 12 AWKILEDLMDQIDLVLTEVLM-----PCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFK 69 (162)
Q Consensus 12 al~~l~~~~~~~DlvllD~~m-----p~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~ 69 (162)
|.+.+.. ..+|+||+|=.+ .-.+--++++.|+..+ ..+-|| +|++..+....+
T Consensus 107 a~~~l~~--~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp--~~~evI-LTGR~~p~~Lie 164 (178)
T PRK07414 107 TQAVVDE--GRYSLVVLDELSLAIQFGLIPETEVLEFLEKRP--SHVDVI-LTGPEMPESLLA 164 (178)
T ss_pred HHHHHhC--CCCCEEEEehhHHHHHCCCccHHHHHHHHHhCC--CCCEEE-EECCCCCHHHHH
Confidence 3344444 689999999643 3356667888888776 555555 777766665544
No 203
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=78.03 E-value=20 Score=27.11 Aligned_cols=82 Identities=15% Similarity=0.148 Sum_probs=55.9
Q ss_pred EcCHHHHHHHHHhhCCCccEEEEc-------CCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceE
Q 044790 6 VENGLQAWKILEDLMDQIDLVLTE-------VLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYF 78 (162)
Q Consensus 6 a~~~~eal~~l~~~~~~~DlvllD-------~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~ 78 (162)
+++.+|++...+. .+|+|=.= -.-|.-.-|++++.+.. ..+++|.=.....++...++++.|++..
T Consensus 134 ~St~ee~l~a~~~---G~D~IGTTLsGYT~~~~~~~~pDf~lvk~l~~----~~~~vIAEGr~~tP~~Ak~a~~~Ga~aV 206 (229)
T COG3010 134 CSTFEEGLNAHKL---GFDIIGTTLSGYTGYTEKPTEPDFQLVKQLSD----AGCRVIAEGRYNTPEQAKKAIEIGADAV 206 (229)
T ss_pred cCCHHHHHHHHHc---CCcEEecccccccCCCCCCCCCcHHHHHHHHh----CCCeEEeeCCCCCHHHHHHHHHhCCeEE
Confidence 4567777766553 57766321 12344455889999876 5789999999999999999999999988
Q ss_pred EeCC--CCHHHHHHHHHH
Q 044790 79 LVKP--IRKNELQNLWQH 94 (162)
Q Consensus 79 l~KP--~~~~~L~~~i~~ 94 (162)
+.=. -.++++-.+...
T Consensus 207 vVGsAITRp~~It~~F~~ 224 (229)
T COG3010 207 VVGSAITRPEEITQWFVD 224 (229)
T ss_pred EECcccCCHHHHHHHHHH
Confidence 6543 123444444433
No 204
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=77.76 E-value=7.1 Score=28.99 Aligned_cols=53 Identities=19% Similarity=0.235 Sum_probs=34.2
Q ss_pred HHHHHHhhCCCccEEEEcCCCC-----CCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHH
Q 044790 12 AWKILEDLMDQIDLVLTEVLMP-----CLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFK 69 (162)
Q Consensus 12 al~~l~~~~~~~DlvllD~~mp-----~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~ 69 (162)
|.+.+.. ..+|+||+|=.+. -.+--++++.|...+ +.+-|| +|++..+....+
T Consensus 107 a~~~l~~--~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp--~~~evV-lTGR~~p~~Lie 164 (191)
T PRK05986 107 AKRMLAD--ESYDLVVLDELTYALKYGYLDVEEVLEALNARP--GMQHVV-ITGRGAPRELIE 164 (191)
T ss_pred HHHHHhC--CCCCEEEEehhhHHHHCCCccHHHHHHHHHcCC--CCCEEE-EECCCCCHHHHH
Confidence 3344444 6899999996432 345667888887765 555555 777766655544
No 205
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=77.53 E-value=26 Score=27.55 Aligned_cols=67 Identities=15% Similarity=0.142 Sum_probs=45.8
Q ss_pred EEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 4 IAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 4 ~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
+.+++.+++.+.+.. .+|+|.+|-. +.+.++++..... +.+|+.+.. .-..+.+....+.|++.+-.
T Consensus 194 VEv~tleea~eA~~~---gaD~I~LD~~-----~~e~l~~~v~~~~-~~i~leAsG-GIt~~ni~~~a~tGvD~Isv 260 (277)
T PRK05742 194 VEVESLDELRQALAA---GADIVMLDEL-----SLDDMREAVRLTA-GRAKLEASG-GINESTLRVIAETGVDYISI 260 (277)
T ss_pred EEeCCHHHHHHHHHc---CCCEEEECCC-----CHHHHHHHHHHhC-CCCcEEEEC-CCCHHHHHHHHHcCCCEEEE
Confidence 467889998888764 7899999843 4445554433211 467766554 45778888889999998753
No 206
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=77.47 E-value=29 Score=26.27 Aligned_cols=86 Identities=12% Similarity=0.091 Sum_probs=57.7
Q ss_pred EcCHHHHHHHHHhhCCCccEEEEcCCC------CCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceE-
Q 044790 6 VENGLQAWKILEDLMDQIDLVLTEVLM------PCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYF- 78 (162)
Q Consensus 6 a~~~~eal~~l~~~~~~~DlvllD~~m------p~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~- 78 (162)
+++..++.+.. + ...|.|.+.-.. ...-|+++++++++. ..+||+.+.+- ..+.+.++++.|++++
T Consensus 118 ~~s~~~a~~A~-~--~gaDYv~~Gpv~t~tK~~~~p~gl~~l~~~~~~---~~iPvvAIGGI-~~~n~~~~~~~GA~giA 190 (221)
T PRK06512 118 LRDRHGAMEIG-E--LRPDYLFFGKLGADNKPEAHPRNLSLAEWWAEM---IEIPCIVQAGS-DLASAVEVAETGAEFVA 190 (221)
T ss_pred CCCHHHHHHhh-h--cCCCEEEECCCCCCCCCCCCCCChHHHHHHHHh---CCCCEEEEeCC-CHHHHHHHHHhCCCEEE
Confidence 34566665543 3 578999887543 122478888888764 47999999875 6777889999999987
Q ss_pred ----EeCCCCHHHHHHHHHHHHHh
Q 044790 79 ----LVKPIRKNELQNLWQHVWRK 98 (162)
Q Consensus 79 ----l~KP~~~~~L~~~i~~~l~~ 98 (162)
|.+.-++.+-...+.+.+..
T Consensus 191 visai~~~~dp~~a~~~~~~~~~~ 214 (221)
T PRK06512 191 LERAVFDAHDPPLAVAQANALLDE 214 (221)
T ss_pred EhHHhhCCCCHHHHHHHHHHHHhh
Confidence 34455555555555555543
No 207
>PF07688 KaiA: KaiA domain; InterPro: IPR011648 KaiA is a component of the kaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. The kaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction. In the complex, KaiA enhances the phosphorylation status of kaiC. In contrast, the presence of kaiB in the complex decreases the phosphorylation status of kaiC, suggesting that kaiB acts by antagonising the interaction between kaiA and kaiC. The activity of KaiA activates kaiBC expression, while KaiC represses it. The overall fold of the KaiA monomer is that of a four-helix bundle, which forms a dimer in the known structure []. KaiA functions as a homodimer. Each monomer is composed of three functional domains: the N-terminal amplitude-amplifier domain, the central period-adjuster domain and the C-termianl clock-oscillator domain. The N-terminal domain of KaiA, from cyanobacteria, acts as a psuedo-receiver domain, but lacks the conserved aspartyl residue required for phosphotransfer in response regulators []. The C-terminal domain is responsible for dimer formation, binding to KaiC, enhancing KaiC phosphorylation and generating the circadian oscillations []. The KaiA protein from Anabaena sp. (strain PCC 7120) lacks the N-terminal CheY-like domain.; GO: 0006468 protein phosphorylation, 0007623 circadian rhythm; PDB: 1V2Z_A 1Q6B_B 1Q6A_A 1SV1_B 1SUY_B 1R5Q_A 1M2E_A 1R8J_B 1M2F_A.
Probab=77.20 E-value=6.9 Score=30.46 Aligned_cols=95 Identities=13% Similarity=0.099 Sum_probs=54.6
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCH--HHHHHHHHcCCceE
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSM--SIVFKCLSKGAVYF 78 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~--~~~~~a~~~Ga~~~ 78 (162)
|.+..+.++.+.++.++.+.+.+|++|+..... -..++.++.+.. --+|+|++...... ......+.....+.
T Consensus 25 Y~l~~~~s~~ef~~~le~~~e~iDCLvle~~~~---~~~~~~~L~e~g--~LLPaVil~~~~s~~~~~~~~~~~YH~aEV 99 (283)
T PF07688_consen 25 YELVQVDSPEEFLEFLEQHREQIDCLVLEQSPL---LPPLFNQLYEQG--ILLPAVILGSSESASTTSESGTVLYHSAEV 99 (283)
T ss_dssp EEEEEESSCHHHHHHHCCTTTT-SEEEEETTST---THHHHHHHHHCT------EEEES---S--TTS--SSGSSBTT-E
T ss_pred eEEEEcCcHHHHHHHHHhchhccCEEEEecCCC---cHHHHHHHHHcC--ccccEEEEecCcccccCCCCCceeeehHhe
Confidence 567888999999999987556799999986543 356778888766 67899998763221 00111122333444
Q ss_pred EeCCCCHHHHHHHHHHHHHhcc
Q 044790 79 LVKPIRKNELQNLWQHVWRKCH 100 (162)
Q Consensus 79 l~KP~~~~~L~~~i~~~l~~~~ 100 (162)
-.+.-..++|-..|.+.+.+..
T Consensus 100 ~L~~~qL~ql~~~ID~AIsrFL 121 (283)
T PF07688_consen 100 HLPIDQLEQLSYNIDQAISRFL 121 (283)
T ss_dssp EE-CCGTTCHHHHHHHHHHHHH
T ss_pred EccHHHHHHHHHHHHHHHHHHH
Confidence 5555556666666666665543
No 208
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=77.10 E-value=34 Score=27.02 Aligned_cols=85 Identities=11% Similarity=0.164 Sum_probs=58.7
Q ss_pred EcCHHHHHHHHHhhCCCccEEEEcCCC-------CCCCHHHHHHHHHccCCCCCCcEEEEecCC-CHHHHHHHHHcCCce
Q 044790 6 VENGLQAWKILEDLMDQIDLVLTEVLM-------PCLSGIGLLRKIMNHKTCKNIPVIMMSSHD-SMSIVFKCLSKGAVY 77 (162)
Q Consensus 6 a~~~~eal~~l~~~~~~~DlvllD~~m-------p~~~g~~~~~~ir~~~~~~~~piI~lt~~~-~~~~~~~a~~~Ga~~ 77 (162)
.++.++|.+++++ ..+|++=+.+-- |..+ ++.++.|+.. ..+|+++=.+.. ..+.+.++...|+..
T Consensus 152 ~T~pe~a~~Fv~~--TgvD~LAvaiGt~HG~Y~~p~l~-~~~l~~I~~~---~~vPLVlHGgSG~~~e~~~~ai~~Gi~K 225 (283)
T PRK07998 152 KTEPEKVKDFVER--TGCDMLAVSIGNVHGLEDIPRID-IPLLKRIAEV---SPVPLVIHGGSGIPPEILRSFVNYKVAK 225 (283)
T ss_pred cCCHHHHHHHHHH--hCcCeeehhccccccCCCCCCcC-HHHHHHHHhh---CCCCEEEeCCCCCCHHHHHHHHHcCCcE
Confidence 5799999999998 789988777622 4443 6888999775 478988776655 456778899999887
Q ss_pred EEeCCCCHHHHHHHHHHHH
Q 044790 78 FLVKPIRKNELQNLWQHVW 96 (162)
Q Consensus 78 ~l~KP~~~~~L~~~i~~~l 96 (162)
+=.-..-.......++..+
T Consensus 226 iNi~Tel~~a~~~~~~~~l 244 (283)
T PRK07998 226 VNIASDLRKAFITTVGKAY 244 (283)
T ss_pred EEECHHHHHHHHHHHHHHH
Confidence 7543333334444444443
No 209
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=77.01 E-value=13 Score=27.92 Aligned_cols=70 Identities=17% Similarity=0.164 Sum_probs=52.5
Q ss_pred cCHHHHHHHHHhhCCCcc-EEEEcCCCCC---CCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeC
Q 044790 7 ENGLQAWKILEDLMDQID-LVLTEVLMPC---LSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVK 81 (162)
Q Consensus 7 ~~~~eal~~l~~~~~~~D-lvllD~~mp~---~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~K 81 (162)
.+..++.+.++. ..++ +++.|+.--+ ..-+++++.|++. ..+|+++-..-...+.+.+++..|++..+.-
T Consensus 30 ~dp~~~a~~~~~--~g~~~i~i~dl~~~~~~~~~n~~~~~~i~~~---~~~pv~~~ggi~~~~d~~~~~~~G~~~vilg 103 (232)
T TIGR03572 30 GDPVNAARIYNA--KGADELIVLDIDASKRGREPLFELISNLAEE---CFMPLTVGGGIRSLEDAKKLLSLGADKVSIN 103 (232)
T ss_pred CCHHHHHHHHHH--cCCCEEEEEeCCCcccCCCCCHHHHHHHHHh---CCCCEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 377888888877 6666 7788886543 2236677888764 4689988888888888889999999988765
No 210
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=76.81 E-value=9.5 Score=29.49 Aligned_cols=64 Identities=17% Similarity=0.248 Sum_probs=42.6
Q ss_pred HHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCH
Q 044790 16 LEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRK 85 (162)
Q Consensus 16 l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~ 85 (162)
+.. +.||++|+=.--|..-|-.-.|.+-.. .++|.|+++...... ..++++..-.+||.-+.++
T Consensus 55 ~~~--~~pdf~I~isPN~~~PGP~~ARE~l~~---~~iP~IvI~D~p~~k-~kd~l~~~g~GYIivk~Dp 118 (276)
T PF01993_consen 55 LKE--WDPDFVIVISPNAAAPGPTKAREMLSA---KGIPCIVISDAPTKK-AKDALEEEGFGYIIVKADP 118 (276)
T ss_dssp HHH--H--SEEEEE-S-TTSHHHHHHHHHHHH---SSS-EEEEEEGGGGG-GHHHHHHTT-EEEEETTS-
T ss_pred HHh--hCCCEEEEECCCCCCCCcHHHHHHHHh---CCCCEEEEcCCCchh-hHHHHHhcCCcEEEEecCc
Confidence 456 889999998888888888888887654 489999999855444 4677887777786655543
No 211
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=76.80 E-value=5.5 Score=30.62 Aligned_cols=57 Identities=19% Similarity=0.184 Sum_probs=41.7
Q ss_pred HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeC-----CCCHHHHHHHHHHHHH
Q 044790 38 IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVK-----PIRKNELQNLWQHVWR 97 (162)
Q Consensus 38 ~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~K-----P~~~~~L~~~i~~~l~ 97 (162)
...++.|++. ..+|||+=.+-..+.++..++++|+++.|.- --++-.+..+++....
T Consensus 164 ~~~l~~i~~~---~~vPvIvDAGiG~pSdaa~AMElG~daVLvNTAiA~A~dPv~MA~Af~~AV~ 225 (247)
T PF05690_consen 164 PYNLRIIIER---ADVPVIVDAGIGTPSDAAQAMELGADAVLVNTAIAKAKDPVAMARAFKLAVE 225 (247)
T ss_dssp HHHHHHHHHH---GSSSBEEES---SHHHHHHHHHTT-SEEEESHHHHTSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh---cCCcEEEeCCCCCHHHHHHHHHcCCceeehhhHHhccCCHHHHHHHHHHHHH
Confidence 3467777765 3899999999999999999999999999864 5667777777766554
No 212
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=76.71 E-value=31 Score=26.32 Aligned_cols=78 Identities=17% Similarity=0.169 Sum_probs=47.0
Q ss_pred HHHHHHHhhCCCccEEEEcCCCCCC--CHHH---------------HHHHHHccCCCCCCcEEEEe-----cCCCHHHHH
Q 044790 11 QAWKILEDLMDQIDLVLTEVLMPCL--SGIG---------------LLRKIMNHKTCKNIPVIMMS-----SHDSMSIVF 68 (162)
Q Consensus 11 eal~~l~~~~~~~DlvllD~~mp~~--~g~~---------------~~~~ir~~~~~~~~piI~lt-----~~~~~~~~~ 68 (162)
++++.+.+ . .|+|=+.+-.|+. ||-. +++.+|+. ..+|+++++ .......+.
T Consensus 22 ~~~~~l~~--~-ad~iElgip~sdp~adG~~i~~~~~~a~~~g~~~~v~~vr~~---~~~Pl~lM~y~n~~~~~~~~~i~ 95 (244)
T PRK13125 22 EFIIGLVE--L-VDILELGIPPKYPKYDGPVIRKSHRKVKGLDIWPLLEEVRKD---VSVPIILMTYLEDYVDSLDNFLN 95 (244)
T ss_pred HHHHHHHh--h-CCEEEECCCCCCCCCCCHHHHHHHHHHHHcCcHHHHHHHhcc---CCCCEEEEEecchhhhCHHHHHH
Confidence 44444555 5 8888777765543 5543 55666643 578887664 223444577
Q ss_pred HHHHcCCceEEeC--CCC-HHHHHHHHHH
Q 044790 69 KCLSKGAVYFLVK--PIR-KNELQNLWQH 94 (162)
Q Consensus 69 ~a~~~Ga~~~l~K--P~~-~~~L~~~i~~ 94 (162)
.+.+.|++.++.- |+. .+++...+..
T Consensus 96 ~~~~~Gadgvii~dlp~e~~~~~~~~~~~ 124 (244)
T PRK13125 96 MARDVGADGVLFPDLLIDYPDDLEKYVEI 124 (244)
T ss_pred HHHHcCCCEEEECCCCCCcHHHHHHHHHH
Confidence 8889999999986 333 3444444433
No 213
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=76.43 E-value=13 Score=30.98 Aligned_cols=67 Identities=10% Similarity=0.187 Sum_probs=47.4
Q ss_pred cCHHHHHHHHHhhCCCccEEEEcCCCCC-CCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceE
Q 044790 7 ENGLQAWKILEDLMDQIDLVLTEVLMPC-LSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYF 78 (162)
Q Consensus 7 ~~~~eal~~l~~~~~~~DlvllD~~mp~-~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~ 78 (162)
++..+-|+++.+ ...|+|++|.--.. .--++++++|++.. |++.||. ..-...+.....+.+|||+.
T Consensus 250 e~dK~rl~ll~~--aGvdvviLDSSqGnS~~qiemik~iK~~y--P~l~Via-GNVVT~~qa~nLI~aGaDgL 317 (503)
T KOG2550|consen 250 DDDKERLDLLVQ--AGVDVVILDSSQGNSIYQLEMIKYIKETY--PDLQIIA-GNVVTKEQAANLIAAGADGL 317 (503)
T ss_pred cchhHHHHHhhh--cCCcEEEEecCCCcchhHHHHHHHHHhhC--CCceeec-cceeeHHHHHHHHHccCcee
Confidence 355677888877 78999999975432 23367899998865 8888772 22234566777888999975
No 214
>PLN02775 Probable dihydrodipicolinate reductase
Probab=76.40 E-value=36 Score=26.95 Aligned_cols=73 Identities=10% Similarity=0.162 Sum_probs=48.8
Q ss_pred cCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHc-CCceEEeCCCCH
Q 044790 7 ENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSK-GAVYFLVKPIRK 85 (162)
Q Consensus 7 ~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~-Ga~~~l~KP~~~ 85 (162)
.+..++|..+.. ..||+|++|...|..- ++.++.... ..+|+|+=|.--..+...+..+. ++--++...++.
T Consensus 66 ~dl~~~l~~~~~--~~~~~VvIDFT~P~a~-~~~~~~~~~----~g~~~VvGTTG~~~e~l~~~~~~~~i~vv~apNfSi 138 (286)
T PLN02775 66 SEREAVLSSVKA--EYPNLIVVDYTLPDAV-NDNAELYCK----NGLPFVMGTTGGDRDRLLKDVEESGVYAVIAPQMGK 138 (286)
T ss_pred ccHHHHHHHhhc--cCCCEEEEECCChHHH-HHHHHHHHH----CCCCEEEECCCCCHHHHHHHHhcCCccEEEECcccH
Confidence 778888877766 6899999999998743 444555443 46787777766666655444443 555666666766
Q ss_pred H
Q 044790 86 N 86 (162)
Q Consensus 86 ~ 86 (162)
.
T Consensus 139 G 139 (286)
T PLN02775 139 Q 139 (286)
T ss_pred H
Confidence 4
No 215
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=75.97 E-value=26 Score=29.78 Aligned_cols=85 Identities=15% Similarity=0.188 Sum_probs=54.9
Q ss_pred HHHHHHHHHhhCCCccEEEEcCCCCCCC-HHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHH-cCCceEEeCCCCHH
Q 044790 9 GLQAWKILEDLMDQIDLVLTEVLMPCLS-GIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLS-KGAVYFLVKPIRKN 86 (162)
Q Consensus 9 ~~eal~~l~~~~~~~DlvllD~~mp~~~-g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~-~Ga~~~l~KP~~~~ 86 (162)
.++..+.+.+ ..||+|.+-..-+... ..++++.+|+.. |.++||+=..+... ...+++. ....||+..--...
T Consensus 52 ~~~~~~~l~~--~~pdvVgis~~t~~~~~a~~~~~~~k~~~--P~~~iV~GG~h~t~-~~~~~l~~~p~vD~Vv~GEGE~ 126 (497)
T TIGR02026 52 DEKLVERLRA--HCPDLVLITAITPAIYIACETLKFARERL--PNAIIVLGGIHPTF-MFHQVLTEAPWIDFIVRGEGEE 126 (497)
T ss_pred HHHHHHHHHh--cCcCEEEEecCcccHHHHHHHHHHHHHHC--CCCEEEEcCCCcCc-CHHHHHhcCCCccEEEeCCcHH
Confidence 3445566777 7899999987655443 356778888765 77777754443322 2334453 34567888887777
Q ss_pred HHHHHHHHHHHh
Q 044790 87 ELQNLWQHVWRK 98 (162)
Q Consensus 87 ~L~~~i~~~l~~ 98 (162)
.+.+.++.+..+
T Consensus 127 ~~~~Ll~~l~~g 138 (497)
T TIGR02026 127 TVVKLIAALENH 138 (497)
T ss_pred HHHHHHHHHHcC
Confidence 777777765443
No 216
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=75.83 E-value=42 Score=27.35 Aligned_cols=86 Identities=14% Similarity=0.144 Sum_probs=57.3
Q ss_pred EEcCHHHHHHHHHhhCCCccEEEEcCCCC-------CCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCce
Q 044790 5 AVENGLQAWKILEDLMDQIDLVLTEVLMP-------CLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVY 77 (162)
Q Consensus 5 ~a~~~~eal~~l~~~~~~~DlvllD~~mp-------~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~ 77 (162)
.+++..++.+... ..+|.|++.-.-| ..-|++.++++... ..+||+.+.+- ..+.+.+.+..|+++
T Consensus 246 S~Hs~~e~~~A~~---~GaDYI~lGPvf~T~tKp~~~~~Gle~l~~~~~~---~~iPv~AiGGI-~~~ni~~l~~~Ga~g 318 (347)
T PRK02615 246 STTNPEEMAKAIA---EGADYIGVGPVFPTPTKPGKAPAGLEYLKYAAKE---APIPWFAIGGI-DKSNIPEVLQAGAKR 318 (347)
T ss_pred ecCCHHHHHHHHH---cCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHh---CCCCEEEECCC-CHHHHHHHHHcCCcE
Confidence 5667777766654 4789998765432 23568888888764 46999988775 477788899999998
Q ss_pred EE-----eCCCCHHHHHHHHHHHHH
Q 044790 78 FL-----VKPIRKNELQNLWQHVWR 97 (162)
Q Consensus 78 ~l-----~KP~~~~~L~~~i~~~l~ 97 (162)
+- .+-.++......+...+.
T Consensus 319 VAvisaI~~a~dp~~~~~~l~~~l~ 343 (347)
T PRK02615 319 VAVVRAIMGAEDPKQATQELLKQLS 343 (347)
T ss_pred EEEeHHHhCCCCHHHHHHHHHHHHh
Confidence 73 333344444444444433
No 217
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=75.43 E-value=34 Score=26.17 Aligned_cols=75 Identities=13% Similarity=0.170 Sum_probs=50.7
Q ss_pred HHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHH
Q 044790 10 LQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQ 89 (162)
Q Consensus 10 ~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~ 89 (162)
.+..+.+.. .|++|+=......-|..+++.+. ..+|||.... . ...+.+..|..+++.++.+.++|.
T Consensus 254 ~~~~~~~~~----ad~~i~ps~~~e~~~~~~~Ea~a-----~G~Pvi~~~~-~---~~~e~i~~~~~g~~~~~~d~~~l~ 320 (359)
T cd03823 254 EEIDDFYAE----IDVLVVPSIWPENFPLVIREALA-----AGVPVIASDI-G---GMAELVRDGVNGLLFPPGDAEDLA 320 (359)
T ss_pred HHHHHHHHh----CCEEEEcCcccCCCChHHHHHHH-----CCCCEEECCC-C---CHHHHhcCCCcEEEECCCCHHHHH
Confidence 455555544 57777643333445666777774 4678885332 2 234456677889999999999999
Q ss_pred HHHHHHHH
Q 044790 90 NLWQHVWR 97 (162)
Q Consensus 90 ~~i~~~l~ 97 (162)
..|..++.
T Consensus 321 ~~i~~l~~ 328 (359)
T cd03823 321 AALERLID 328 (359)
T ss_pred HHHHHHHh
Confidence 99999876
No 218
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=75.30 E-value=36 Score=26.36 Aligned_cols=81 Identities=11% Similarity=-0.021 Sum_probs=53.5
Q ss_pred EEEEcCHHHHHHHHHhhCCCccEEEEcC---CCCCCCHHHHHHHHHccCCCC-CCcEEEEecCCCHHHHHHHHHcCCceE
Q 044790 3 VIAVENGLQAWKILEDLMDQIDLVLTEV---LMPCLSGIGLLRKIMNHKTCK-NIPVIMMSSHDSMSIVFKCLSKGAVYF 78 (162)
Q Consensus 3 v~~a~~~~eal~~l~~~~~~~DlvllD~---~mp~~~g~~~~~~ir~~~~~~-~~piI~lt~~~~~~~~~~a~~~Ga~~~ 78 (162)
+..+++..|+..... ..+|+|-+.- ..-..+ ++.+.++...- + ..++|..++-..++.+.++++.|++++
T Consensus 164 lvevh~~~E~~~A~~---~gadiIgin~rdl~~~~~d-~~~~~~l~~~~--p~~~~vIaegGI~t~ed~~~~~~~Gad~v 237 (260)
T PRK00278 164 LVEVHDEEELERALK---LGAPLIGINNRNLKTFEVD-LETTERLAPLI--PSDRLVVSESGIFTPEDLKRLAKAGADAV 237 (260)
T ss_pred EEEeCCHHHHHHHHH---cCCCEEEECCCCcccccCC-HHHHHHHHHhC--CCCCEEEEEeCCCCHHHHHHHHHcCCCEE
Confidence 346778888866543 4688887542 111223 55666665432 3 468899999889999999999999998
Q ss_pred Ee-----CCCCHHHHH
Q 044790 79 LV-----KPIRKNELQ 89 (162)
Q Consensus 79 l~-----KP~~~~~L~ 89 (162)
+. |+-++.+..
T Consensus 238 lVGsaI~~~~dp~~~~ 253 (260)
T PRK00278 238 LVGESLMRADDPGAAL 253 (260)
T ss_pred EECHHHcCCCCHHHHH
Confidence 54 454544433
No 219
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=74.94 E-value=20 Score=27.15 Aligned_cols=69 Identities=25% Similarity=0.290 Sum_probs=49.9
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCCCC-CCH--HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLMPC-LSG--IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~mp~-~~g--~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
+..+.++.+.+. ..-.+|++|+.--+ +.| +++++.++.. ..+|+|.-..-...+++.++.+.|+++.+.
T Consensus 148 ~~~~~~~~~~~~-g~~~ii~tdi~~dGt~~G~d~~~~~~l~~~---~~~~viasGGv~~~~Dl~~l~~~G~~gviv 219 (229)
T PF00977_consen 148 DLEEFAKRLEEL-GAGEIILTDIDRDGTMQGPDLELLKQLAEA---VNIPVIASGGVRSLEDLRELKKAGIDGVIV 219 (229)
T ss_dssp EHHHHHHHHHHT-T-SEEEEEETTTTTTSSS--HHHHHHHHHH---HSSEEEEESS--SHHHHHHHHHTTECEEEE
T ss_pred CHHHHHHHHHhc-CCcEEEEeeccccCCcCCCCHHHHHHHHHH---cCCCEEEecCCCCHHHHHHHHHCCCcEEEE
Confidence 456777777762 33468889996544 233 5778888765 389999999988999999999999998875
No 220
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=74.89 E-value=42 Score=27.56 Aligned_cols=66 Identities=17% Similarity=0.207 Sum_probs=44.8
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCC-------CCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLM-------PCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~m-------p~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
+..+..+.+.+ ..+|+|.++... +..+...+.+.+++ ..+|||. ..-...+.+..+++.|||.++.
T Consensus 142 ~~~e~a~~l~e--aGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~----~~ipVIa-G~V~t~e~A~~l~~aGAD~V~V 214 (368)
T PRK08649 142 RAQELAPTVVE--AGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYE----LDVPVIV-GGCVTYTTALHLMRTGAAGVLV 214 (368)
T ss_pred CHHHHHHHHHH--CCCCEEEEeccchhhhccCCcCCHHHHHHHHHH----CCCCEEE-eCCCCHHHHHHHHHcCCCEEEE
Confidence 45566666776 789999996532 22244555555554 3688876 4455678888899999999854
No 221
>PRK06801 hypothetical protein; Provisional
Probab=74.81 E-value=40 Score=26.66 Aligned_cols=87 Identities=9% Similarity=0.042 Sum_probs=58.8
Q ss_pred EEcCHHHHHHHHHhhCCCccEEEEcCC-----CCC--CCHHHHHHHHHccCCCCCCcEEEEecCC-CHHHHHHHHHcCCc
Q 044790 5 AVENGLQAWKILEDLMDQIDLVLTEVL-----MPC--LSGIGLLRKIMNHKTCKNIPVIMMSSHD-SMSIVFKCLSKGAV 76 (162)
Q Consensus 5 ~a~~~~eal~~l~~~~~~~DlvllD~~-----mp~--~~g~~~~~~ir~~~~~~~~piI~lt~~~-~~~~~~~a~~~Ga~ 76 (162)
..++.++|.+++++ ..+|.+=+-+- -++ .-+++.++.|+.. ..+|+++..+.. ..+...++.+.|+.
T Consensus 154 ~~T~pe~a~~f~~~--tgvD~LAvaiGt~Hg~y~~~~~l~~e~l~~i~~~---~~~PLVlHGGSgi~~e~~~~~i~~Gi~ 228 (286)
T PRK06801 154 KFTDPQLARDFVDR--TGIDALAVAIGNAHGKYKGEPKLDFARLAAIHQQ---TGLPLVLHGGSGISDADFRRAIELGIH 228 (286)
T ss_pred cCCCHHHHHHHHHH--HCcCEEEeccCCCCCCCCCCCCCCHHHHHHHHHh---cCCCEEEECCCCCCHHHHHHHHHcCCc
Confidence 35678999999988 78998877441 111 2478899999875 368998887733 45678889999999
Q ss_pred eEEeCCCCHHHHHHHHHHHH
Q 044790 77 YFLVKPIRKNELQNLWQHVW 96 (162)
Q Consensus 77 ~~l~KP~~~~~L~~~i~~~l 96 (162)
.+=.-.--.......+++.+
T Consensus 229 KINv~T~~~~a~~~~~~~~~ 248 (286)
T PRK06801 229 KINFYTGMSQAALAAVEQRM 248 (286)
T ss_pred EEEehhHHHHHHHHHHHHHH
Confidence 88544333334444444443
No 222
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=74.76 E-value=41 Score=26.69 Aligned_cols=87 Identities=13% Similarity=0.167 Sum_probs=60.2
Q ss_pred EcCHHHHHHHHHhhCCCccEEEEcC--C---CCC---CCHHHHHHHHHccCCCCCCcEEEEecCC-CHHHHHHHHHcCCc
Q 044790 6 VENGLQAWKILEDLMDQIDLVLTEV--L---MPC---LSGIGLLRKIMNHKTCKNIPVIMMSSHD-SMSIVFKCLSKGAV 76 (162)
Q Consensus 6 a~~~~eal~~l~~~~~~~DlvllD~--~---mp~---~~g~~~~~~ir~~~~~~~~piI~lt~~~-~~~~~~~a~~~Ga~ 76 (162)
.++.++|.+.. + ..+|.+-+.+ . -+. .=+++.++.|++.- ..+|+++..+.. ..+.+.++.+.|+.
T Consensus 153 ~t~peea~~f~-~--tgvD~LAv~iG~vHG~y~t~~k~l~~e~L~~i~~~~--~~iPlVlhGGSGi~~e~~~~~i~~Gi~ 227 (293)
T PRK07315 153 LAPIEDAKAMV-E--TGIDFLAAGIGNIHGPYPENWEGLDLDHLEKLTEAV--PGFPIVLHGGSGIPDDQIQEAIKLGVA 227 (293)
T ss_pred CCCHHHHHHHH-H--cCCCEEeeccccccccCCCCCCcCCHHHHHHHHHhc--cCCCEEEECCCCCCHHHHHHHHHcCCC
Confidence 37899999988 5 6789998883 1 121 24689999998753 468998887733 56678889999999
Q ss_pred eEEeCCCCHHHHHHHHHHHHH
Q 044790 77 YFLVKPIRKNELQNLWQHVWR 97 (162)
Q Consensus 77 ~~l~KP~~~~~L~~~i~~~l~ 97 (162)
.+=.-..-.......++.++.
T Consensus 228 KiNv~T~i~~~~~~~~~~~~~ 248 (293)
T PRK07315 228 KVNVNTECQIAFANATRKFAR 248 (293)
T ss_pred EEEEccHHHHHHHHHHHHHHH
Confidence 884433222355555555543
No 223
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=74.74 E-value=22 Score=27.02 Aligned_cols=63 Identities=22% Similarity=0.378 Sum_probs=44.6
Q ss_pred HHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceE-EeCC
Q 044790 14 KILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYF-LVKP 82 (162)
Q Consensus 14 ~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~-l~KP 82 (162)
+.++. +.||.||+----|.--|-.-.+.|.+. .++|.|+++...... +...++..-.+| |.|+
T Consensus 54 ~~~e~--~~pDfvi~isPNpaaPGP~kARE~l~~---s~~PaiiigDaPg~~-vkdeleeqGlGYIivk~ 117 (277)
T COG1927 54 EMLEE--FNPDFVIYISPNPAAPGPKKAREILSD---SDVPAIIIGDAPGLK-VKDELEEQGLGYIIVKA 117 (277)
T ss_pred HHHHh--cCCCEEEEeCCCCCCCCchHHHHHHhh---cCCCEEEecCCccch-hHHHHHhcCCeEEEecC
Confidence 34555 889999998888888888888888765 489999998766444 445555444455 5553
No 224
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=74.56 E-value=48 Score=27.56 Aligned_cols=86 Identities=16% Similarity=0.176 Sum_probs=57.0
Q ss_pred HHHHHHHhhCCCccEEEEcCC----CCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceE-----EeC
Q 044790 11 QAWKILEDLMDQIDLVLTEVL----MPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYF-----LVK 81 (162)
Q Consensus 11 eal~~l~~~~~~~DlvllD~~----mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~-----l~K 81 (162)
+.+..+.+ ...|.|.+..- .....+++.+++++.. ..+||++...- ..+....+++.|++.+ |.+
T Consensus 122 e~~~~a~~--~GaD~I~~~pg~~~~~~~~~~~~~l~~l~~~---~~iPI~a~GGI-~~~n~~~~l~aGAdgv~vGsaI~~ 195 (430)
T PRK07028 122 KRAVELEE--LGVDYINVHVGIDQQMLGKDPLELLKEVSEE---VSIPIAVAGGL-DAETAAKAVAAGADIVIVGGNIIK 195 (430)
T ss_pred HHHHHHHh--cCCCEEEEEeccchhhcCCChHHHHHHHHhh---CCCcEEEECCC-CHHHHHHHHHcCCCEEEEChHHcC
Confidence 33333444 46888876531 1224567888888764 35888877765 5777889999999966 455
Q ss_pred CCCHHHHHHHHHHHHHhccCC
Q 044790 82 PIRKNELQNLWQHVWRKCHSS 102 (162)
Q Consensus 82 P~~~~~L~~~i~~~l~~~~~~ 102 (162)
.-++.+....+++.+.+....
T Consensus 196 ~~d~~~~~~~l~~~i~~~~~~ 216 (430)
T PRK07028 196 SADVTEAARKIREAIDSGKPV 216 (430)
T ss_pred CCCHHHHHHHHHHHHhccCCc
Confidence 667777777777777664433
No 225
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=73.96 E-value=30 Score=25.31 Aligned_cols=73 Identities=12% Similarity=0.013 Sum_probs=44.9
Q ss_pred cCHHHHHHHHHhhCCCccEEEEcCC--CCCCCHHHHHHHHHccCCCCCCcEEEEe--cCCCHHHHHHHHHcCCceEEeCC
Q 044790 7 ENGLQAWKILEDLMDQIDLVLTEVL--MPCLSGIGLLRKIMNHKTCKNIPVIMMS--SHDSMSIVFKCLSKGAVYFLVKP 82 (162)
Q Consensus 7 ~~~~eal~~l~~~~~~~DlvllD~~--mp~~~g~~~~~~ir~~~~~~~~piI~lt--~~~~~~~~~~a~~~Ga~~~l~KP 82 (162)
.+.+++++.++. -...+-++.+. +-...|.+.++.||+.. +...+++=+ .......+..+.++|++-++.-.
T Consensus 9 ~~~~~a~~~~~~--l~~~v~~iev~~~l~~~~g~~~i~~l~~~~--~~~~i~~d~k~~d~~~~~~~~~~~~Gad~i~vh~ 84 (206)
T TIGR03128 9 LDIEEALELAEK--VADYVDIIEIGTPLIKNEGIEAVKEMKEAF--PDRKVLADLKTMDAGEYEAEQAFAAGADIVTVLG 84 (206)
T ss_pred CCHHHHHHHHHH--cccCeeEEEeCCHHHHHhCHHHHHHHHHHC--CCCEEEEEEeeccchHHHHHHHHHcCCCEEEEec
Confidence 467788888877 34455566664 44456788999998763 344444111 11222247888999999775444
Q ss_pred C
Q 044790 83 I 83 (162)
Q Consensus 83 ~ 83 (162)
.
T Consensus 85 ~ 85 (206)
T TIGR03128 85 V 85 (206)
T ss_pred c
Confidence 3
No 226
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=73.93 E-value=42 Score=26.51 Aligned_cols=66 Identities=14% Similarity=0.073 Sum_probs=46.9
Q ss_pred EEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEE
Q 044790 4 IAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFL 79 (162)
Q Consensus 4 ~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l 79 (162)
+.+++.+++.+.+.. .+|+|++|-.-| -++-+.+.... ...+|-.++.-..+.+.+....|+|-..
T Consensus 198 VEv~slee~~ea~~~---gaDiImLDn~s~----e~l~~av~~~~---~~~~leaSGgI~~~ni~~yA~tGVD~Is 263 (281)
T PRK06543 198 VEVDRLDQIEPVLAA---GVDTIMLDNFSL----DDLREGVELVD---GRAIVEASGNVNLNTVGAIASTGVDVIS 263 (281)
T ss_pred EEeCCHHHHHHHHhc---CCCEEEECCCCH----HHHHHHHHHhC---CCeEEEEECCCCHHHHHHHHhcCCCEEE
Confidence 578899999998864 789999994333 33333333221 2237888888899999999999988653
No 227
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=73.92 E-value=42 Score=26.54 Aligned_cols=85 Identities=14% Similarity=0.188 Sum_probs=59.5
Q ss_pred EcCHHHHHHHHHhhCCCccEEEEcCC--------CCCCCHHHHHHHHHccCCCCCCcEEEEecCC-CHHHHHHHHHcCCc
Q 044790 6 VENGLQAWKILEDLMDQIDLVLTEVL--------MPCLSGIGLLRKIMNHKTCKNIPVIMMSSHD-SMSIVFKCLSKGAV 76 (162)
Q Consensus 6 a~~~~eal~~l~~~~~~~DlvllD~~--------mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~-~~~~~~~a~~~Ga~ 76 (162)
.++.++|.+++++ ..+|.+=+-+- -|..+ |+.++.|++. -.+|+++=.+.. ..+.+.+|.+.|+.
T Consensus 154 ~T~peea~~Fv~~--TgvD~LAvaiGt~HG~Y~~~p~Ld-fd~l~~I~~~---~~vPLVLHGgSG~~~e~~~kai~~GI~ 227 (286)
T PRK12738 154 LTDPQEAKRFVEL--TGVDSLAVAIGTAHGLYSKTPKID-FQRLAEIREV---VDVPLVLHGASDVPDEFVRRTIELGVT 227 (286)
T ss_pred CCCHHHHHHHHHH--hCCCEEEeccCcccCCCCCCCcCC-HHHHHHHHHH---hCCCEEEeCCCCCCHHHHHHHHHcCCe
Confidence 6789999999998 88998887772 35566 8899999875 378987766544 56667889999987
Q ss_pred eEEeCCCCHHHHHHHHHHHH
Q 044790 77 YFLVKPIRKNELQNLWQHVW 96 (162)
Q Consensus 77 ~~l~KP~~~~~L~~~i~~~l 96 (162)
.+=.-..-.......++..+
T Consensus 228 KiNi~T~l~~a~~~~~~~~~ 247 (286)
T PRK12738 228 KVNVATELKIAFAGAVKAWF 247 (286)
T ss_pred EEEeCcHHHHHHHHHHHHHH
Confidence 76433322334444444444
No 228
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=73.43 E-value=27 Score=27.57 Aligned_cols=70 Identities=16% Similarity=0.171 Sum_probs=50.3
Q ss_pred ccEEEE-cCCCCCCCH-HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHH
Q 044790 23 IDLVLT-EVLMPCLSG-IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHV 95 (162)
Q Consensus 23 ~Dlvll-D~~mp~~~g-~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~ 95 (162)
.|.|++ |-+..-..| -+.+++.|... ++++.|-+ ..+..+...+|+++|+|-.+.-.++++++.+.++.+
T Consensus 158 sDavliKDNHia~~g~i~~Av~~aR~~~--~~~~kIEV-Evesle~~~eAl~agaDiImLDNm~~e~~~~av~~l 229 (280)
T COG0157 158 SDAVLIKDNHIAAAGSITEAVRRARAAA--PFTKKIEV-EVESLEEAEEALEAGADIIMLDNMSPEELKEAVKLL 229 (280)
T ss_pred cceEEehhhHHHHhccHHHHHHHHHHhC--CCCceEEE-EcCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHh
Confidence 455655 433332223 44678887765 66664433 345788899999999999999999999999999875
No 229
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=73.42 E-value=37 Score=25.66 Aligned_cols=65 Identities=22% Similarity=0.222 Sum_probs=45.8
Q ss_pred HHHHHHHHhhCCCcc-EEEEcCC----CCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHc-CCceEEe
Q 044790 10 LQAWKILEDLMDQID-LVLTEVL----MPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSK-GAVYFLV 80 (162)
Q Consensus 10 ~eal~~l~~~~~~~D-lvllD~~----mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~-Ga~~~l~ 80 (162)
.+..+.+.+ ..+| +++.++. +++ -.+++++.+++. ..+|||+...-...+.+.++++. |+++.+.
T Consensus 152 ~~~~~~l~~--~G~d~i~v~~i~~~g~~~g-~~~~~i~~i~~~---~~~pvia~GGi~~~~di~~~l~~~g~dgv~v 222 (243)
T cd04731 152 VEWAKEVEE--LGAGEILLTSMDRDGTKKG-YDLELIRAVSSA---VNIPVIASGGAGKPEHFVEAFEEGGADAALA 222 (243)
T ss_pred HHHHHHHHH--CCCCEEEEeccCCCCCCCC-CCHHHHHHHHhh---CCCCEEEeCCCCCHHHHHHHHHhCCCCEEEE
Confidence 344455555 6788 4454543 222 237888888764 47999999988899999999997 9988755
No 230
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=73.34 E-value=19 Score=32.80 Aligned_cols=75 Identities=7% Similarity=0.177 Sum_probs=51.4
Q ss_pred CCccEEEEc-CCCCCCCHHHHH-HHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHHHh
Q 044790 21 DQIDLVLTE-VLMPCLSGIGLL-RKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVWRK 98 (162)
Q Consensus 21 ~~~DlvllD-~~mp~~~g~~~~-~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 98 (162)
..+-|+|+| .++--..++..+ +.|.+-+ .++.+|+++. +.+.+...+..-+.-|-.+++..++|...|.+++..
T Consensus 119 ~~~KV~IIDEad~lt~~a~NaLLK~LEEpP--~~~~fIl~tt--~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~ 194 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQGFNALLKIVEEPP--EHLKFIFATT--EPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQ 194 (824)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHHhCCC--CCeEEEEEeC--ChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHH
Confidence 457788887 444444555544 4444433 4566666663 444566677777888989999999999999988766
Q ss_pred c
Q 044790 99 C 99 (162)
Q Consensus 99 ~ 99 (162)
.
T Consensus 195 E 195 (824)
T PRK07764 195 E 195 (824)
T ss_pred c
Confidence 4
No 231
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=73.33 E-value=16 Score=26.70 Aligned_cols=47 Identities=17% Similarity=0.313 Sum_probs=27.5
Q ss_pred CCccEEEEcCC-----CCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHH
Q 044790 21 DQIDLVLTEVL-----MPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKC 70 (162)
Q Consensus 21 ~~~DlvllD~~-----mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a 70 (162)
..+|+||+|=. ..-.+--++++.|...+ ..+-|| +|.+..+..+.+.
T Consensus 95 ~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp--~~~evV-lTGR~~~~~l~e~ 146 (172)
T PF02572_consen 95 GEYDLVILDEINYAVDYGLLSEEEVLDLLENRP--ESLEVV-LTGRNAPEELIEA 146 (172)
T ss_dssp TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS---TT-EEE-EE-SS--HHHHHH
T ss_pred CCCCEEEEcchHHHhHCCCccHHHHHHHHHcCC--CCeEEE-EECCCCCHHHHHh
Confidence 67999999953 33456667888888765 555555 7777777666554
No 232
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=73.14 E-value=36 Score=26.85 Aligned_cols=64 Identities=16% Similarity=0.100 Sum_probs=45.5
Q ss_pred HHHHHHHhhCCCccEEEEcCCCCCC---CHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 11 QAWKILEDLMDQIDLVLTEVLMPCL---SGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 11 eal~~l~~~~~~~DlvllD~~mp~~---~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
++++.+.. ..+|.|.+.+..|.. ..++.+++|+... .+||++=.- ...+.+..+.+.|++.+..
T Consensus 133 ~~i~~~~~--~g~~~i~l~~~~p~~~~~~~~~~i~~l~~~~---~~pvivK~v-~s~~~a~~a~~~G~d~I~v 199 (299)
T cd02809 133 DLLRRAEA--AGYKALVLTVDTPVLGRRLTWDDLAWLRSQW---KGPLILKGI-LTPEDALRAVDAGADGIVV 199 (299)
T ss_pred HHHHHHHH--cCCCEEEEecCCCCCCCCCCHHHHHHHHHhc---CCCEEEeec-CCHHHHHHHHHCCCCEEEE
Confidence 34555555 678999998877742 1257888888742 478776532 4567789999999999876
No 233
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=73.12 E-value=27 Score=24.60 Aligned_cols=57 Identities=21% Similarity=0.017 Sum_probs=40.5
Q ss_pred CCccEEEEcCCCCCCCH-------HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 21 DQIDLVLTEVLMPCLSG-------IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 21 ~~~DlvllD~~mp~~~g-------~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
...|.|.++...+...+ ...+..++.. ..+||+....-...+.+.++++.|++.+..
T Consensus 135 ~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~pi~~~GGi~~~~~~~~~~~~Gad~v~v 198 (200)
T cd04722 135 AGVDEVGLGNGGGGGGGRDAVPIADLLLILAKRG---SKVPVIAGGGINDPEDAAEALALGADGVIV 198 (200)
T ss_pred cCCCEEEEcCCcCCCCCccCchhHHHHHHHHHhc---CCCCEEEECCCCCHHHHHHHHHhCCCEEEe
Confidence 56788888876664432 1334444432 578999988887778899999999998763
No 234
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=72.43 E-value=21 Score=27.52 Aligned_cols=70 Identities=13% Similarity=0.227 Sum_probs=52.6
Q ss_pred cCHHHHHHHHHhhCCCc-cEEEEcCCCCCC-CH--HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeC
Q 044790 7 ENGLQAWKILEDLMDQI-DLVLTEVLMPCL-SG--IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVK 81 (162)
Q Consensus 7 ~~~~eal~~l~~~~~~~-DlvllD~~mp~~-~g--~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~K 81 (162)
.+..+..+.+.. ..+ .+++.|+.--++ .| +++++.|.+. ..+||++=..-...+.+.+.+..|++.++.-
T Consensus 30 ~dp~~~a~~~~~--~g~~~l~i~Dl~~~~~~~~~n~~~i~~i~~~---~~~pv~~gGGi~s~~d~~~l~~~G~~~vvig 103 (258)
T PRK01033 30 GDPINAVRIFNE--KEVDELIVLDIDASKRGSEPNYELIENLASE---CFMPLCYGGGIKTLEQAKKIFSLGVEKVSIN 103 (258)
T ss_pred CCHHHHHHHHHH--cCCCEEEEEECCCCcCCCcccHHHHHHHHHh---CCCCEEECCCCCCHHHHHHHHHCCCCEEEEC
Confidence 467777777776 454 578889976642 23 7788888764 4789988888888899999999999988754
No 235
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=71.89 E-value=34 Score=26.10 Aligned_cols=67 Identities=18% Similarity=0.024 Sum_probs=41.4
Q ss_pred HHHHHHHhhCCCccEEEEcCCCCCCC------HHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCC
Q 044790 11 QAWKILEDLMDQIDLVLTEVLMPCLS------GIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKP 82 (162)
Q Consensus 11 eal~~l~~~~~~~DlvllD~~mp~~~------g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP 82 (162)
+.++.+.. ....+++| -..|+.. -.+.++++|+.. ...||++=.+-...+.+..+.+.|+|+++.=.
T Consensus 143 e~l~~~~~--~~~~~l~m-sv~~~~g~~~~~~~~~~i~~lr~~~--~~~~i~v~gGI~~~e~i~~~~~~gaD~vvvGS 215 (244)
T PRK13125 143 LLIHRLSK--LSPLFIYY-GLRPATGVPLPVSVERNIKRVRNLV--GNKYLVVGFGLDSPEDARDALSAGADGVVVGT 215 (244)
T ss_pred HHHHHHHH--hCCCEEEE-EeCCCCCCCchHHHHHHHHHHHHhc--CCCCEEEeCCcCCHHHHHHHHHcCCCEEEECH
Confidence 34444444 45567767 4455531 234667777643 34665543444478888888999999998764
No 236
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=71.48 E-value=42 Score=25.46 Aligned_cols=92 Identities=16% Similarity=0.006 Sum_probs=69.1
Q ss_pred EEEcCHHHHHHHHHhhCCCccEEEE----cCCCCCCCH-HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceE
Q 044790 4 IAVENGLQAWKILEDLMDQIDLVLT----EVLMPCLSG-IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYF 78 (162)
Q Consensus 4 ~~a~~~~eal~~l~~~~~~~Dlvll----D~~mp~~~g-~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~ 78 (162)
..+.+..+..+++++ -.+|.+++ |.++-+.+- ++.+..+++.. ...-.+.+++--.++.+......|++-|
T Consensus 114 ~~~~~~~~~~~~l~~--~gvd~~~~H~g~D~q~~G~~~~~~~l~~ik~~~--~~g~~vAVaGGI~~~~i~~~~~~~~~iv 189 (217)
T COG0269 114 IGVWDPEQRAKWLKE--LGVDQVILHRGRDAQAAGKSWGEDDLEKIKKLS--DLGAKVAVAGGITPEDIPLFKGIGADIV 189 (217)
T ss_pred ecCCCHHHHHHHHHH--hCCCEEEEEecccHhhcCCCccHHHHHHHHHhh--ccCceEEEecCCCHHHHHHHhcCCCCEE
Confidence 345678899999997 68999985 667767766 78888888754 2324667888889999999999998765
Q ss_pred -----EeCCCCHHHHHHHHHHHHHhc
Q 044790 79 -----LVKPIRKNELQNLWQHVWRKC 99 (162)
Q Consensus 79 -----l~KP~~~~~L~~~i~~~l~~~ 99 (162)
|++--++.+-.+.++..+.++
T Consensus 190 IvGraIt~a~dp~~~a~~~~~~i~~~ 215 (217)
T COG0269 190 IVGRAITGAKDPAEAARKFKEEIDKI 215 (217)
T ss_pred EECchhcCCCCHHHHHHHHHHHHhcc
Confidence 567777777777777766543
No 237
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=71.47 E-value=13 Score=24.47 Aligned_cols=38 Identities=24% Similarity=0.288 Sum_probs=29.5
Q ss_pred CCCHHHHHHHHHcCCceEEeCCC--CHHHHHHHHHHHHHh
Q 044790 61 HDSMSIVFKCLSKGAVYFLVKPI--RKNELQNLWQHVWRK 98 (162)
Q Consensus 61 ~~~~~~~~~a~~~Ga~~~l~KP~--~~~~L~~~i~~~l~~ 98 (162)
....+....+++.|..=|+-||+ +.+++.+.++..-+.
T Consensus 73 ~~h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~ 112 (120)
T PF01408_consen 73 SSHAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAKEK 112 (120)
T ss_dssp GGHHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHHh
Confidence 33566788899999999999997 778887777665443
No 238
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=71.46 E-value=43 Score=25.50 Aligned_cols=65 Identities=15% Similarity=0.213 Sum_probs=48.1
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCCCC-CCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEE
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLMPC-LSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFL 79 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~mp~-~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l 79 (162)
+..+..+.+.+ ...|.|-.+...++ .--++.+++++ ..+|||....-.+.+.+.+++..|++...
T Consensus 153 ~~~~la~~l~~--aG~d~ihv~~~~~g~~ad~~~I~~i~-----~~ipVIgnGgI~s~eda~~~l~~GaD~Vm 218 (233)
T cd02911 153 DDEELARLIEK--AGADIIHVDAMDPGNHADLKKIRDIS-----TELFIIGNNSVTTIESAKEMFSYGADMVS 218 (233)
T ss_pred CHHHHHHHHHH--hCCCEEEECcCCCCCCCcHHHHHHhc-----CCCEEEEECCcCCHHHHHHHHHcCCCEEE
Confidence 44555566766 67898877765554 23366666664 36899999988899999999999999874
No 239
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=71.35 E-value=41 Score=25.24 Aligned_cols=66 Identities=17% Similarity=0.210 Sum_probs=46.5
Q ss_pred HHHHHHHHHhhCCCccEEE-EcCCC----CCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHH-HHHcCCceEEe
Q 044790 9 GLQAWKILEDLMDQIDLVL-TEVLM----PCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFK-CLSKGAVYFLV 80 (162)
Q Consensus 9 ~~eal~~l~~~~~~~Dlvl-lD~~m----p~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~-a~~~Ga~~~l~ 80 (162)
..+..+.+.+ ...|.|+ .++.- ++. -+++++.+++. ..+||+....-...+.+.+ +...|+++.+.
T Consensus 155 ~~~~~~~~~~--~G~d~i~i~~i~~~g~~~g~-~~~~~~~i~~~---~~ipvia~GGi~s~~di~~~l~~~gadgV~v 226 (232)
T TIGR03572 155 PVEWAREAEQ--LGAGEILLNSIDRDGTMKGY-DLELIKTVSDA---VSIPVIALGGAGSLDDLVEVALEAGASAVAA 226 (232)
T ss_pred HHHHHHHHHH--cCCCEEEEeCCCccCCcCCC-CHHHHHHHHhh---CCCCEEEECCCCCHHHHHHHHHHcCCCEEEE
Confidence 4556666666 6677444 45422 222 27888888765 3789999998888888888 66789998864
No 240
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=71.34 E-value=41 Score=28.84 Aligned_cols=70 Identities=17% Similarity=0.177 Sum_probs=51.3
Q ss_pred EcCHHHHHHHHHhhCCCccEEEEcC--------------CCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHH
Q 044790 6 VENGLQAWKILEDLMDQIDLVLTEV--------------LMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCL 71 (162)
Q Consensus 6 a~~~~eal~~l~~~~~~~DlvllD~--------------~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~ 71 (162)
+.+.++|..+++ ..+|.|.+.+ -.|....+..+..+.+. ..+|||.=..-.....+.+|+
T Consensus 297 v~t~e~a~~a~~---aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~---~~vpVIadGGI~~~~di~kAl 370 (505)
T PLN02274 297 VVTMYQAQNLIQ---AGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQ---HGVPVIADGGISNSGHIVKAL 370 (505)
T ss_pred CCCHHHHHHHHH---cCcCEEEECCCCCccccCccccccCCCcccHHHHHHHHHHh---cCCeEEEeCCCCCHHHHHHHH
Confidence 567778777765 4789887642 12334455566666543 468999999999999999999
Q ss_pred HcCCceEEeC
Q 044790 72 SKGAVYFLVK 81 (162)
Q Consensus 72 ~~Ga~~~l~K 81 (162)
.+||+..+.=
T Consensus 371 a~GA~~V~vG 380 (505)
T PLN02274 371 TLGASTVMMG 380 (505)
T ss_pred HcCCCEEEEc
Confidence 9999988643
No 241
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=71.30 E-value=52 Score=26.40 Aligned_cols=73 Identities=12% Similarity=0.026 Sum_probs=47.2
Q ss_pred EEEcCHHHHHHHHHh---hCCCccEEEEcCC--CCC---CCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCC
Q 044790 4 IAVENGLQAWKILED---LMDQIDLVLTEVL--MPC---LSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGA 75 (162)
Q Consensus 4 ~~a~~~~eal~~l~~---~~~~~DlvllD~~--mp~---~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga 75 (162)
+.+++.+++.+.+.- .+..+|+|++|-+ -|. .+--++-+.+.... .. ..+-.++.-..+.+......|+
T Consensus 208 VEv~tleea~ea~~~~~~~~agaDiImLDnm~~~~~~~~~~~e~l~~av~~~~--~~-~~lEaSGGIt~~ni~~yA~tGV 284 (308)
T PLN02716 208 VETRTLEEVKEVLEYLSDTKTSLTRVMLDNMVVPLENGDVDVSMLKEAVELIN--GR-FETEASGNVTLDTVHKIGQTGV 284 (308)
T ss_pred EEECCHHHHHHHHHhcccccCCCCEEEeCCCcccccccCCCHHHHHHHHHhhC--CC-ceEEEECCCCHHHHHHHHHcCC
Confidence 478899999999880 0025899999965 121 13333333333222 22 3477888889999999889998
Q ss_pred ceEE
Q 044790 76 VYFL 79 (162)
Q Consensus 76 ~~~l 79 (162)
|-+.
T Consensus 285 D~Is 288 (308)
T PLN02716 285 TYIS 288 (308)
T ss_pred CEEE
Confidence 8553
No 242
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=71.27 E-value=53 Score=26.55 Aligned_cols=67 Identities=12% Similarity=0.186 Sum_probs=43.6
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceE-EeCCCCHHHHHHHHHHHHHh
Q 044790 23 IDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYF-LVKPIRKNELQNLWQHVWRK 98 (162)
Q Consensus 23 ~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~-l~KP~~~~~L~~~i~~~l~~ 98 (162)
.|++++=....+.-|.-+++.+. ..+|||...... ..+.+..|..+| +..|.+.++|...|.+++..
T Consensus 277 aDv~v~pS~~~E~f~~~~lEAma-----~G~PVI~s~~gg----~~Eiv~~~~~G~~l~~~~d~~~la~~I~~ll~d 344 (380)
T PRK15484 277 ADLVVVPSQVEEAFCMVAVEAMA-----AGKPVLASTKGG----ITEFVLEGITGYHLAEPMTSDSIISDINRTLAD 344 (380)
T ss_pred CCEEEeCCCCccccccHHHHHHH-----cCCCEEEeCCCC----cHhhcccCCceEEEeCCCCHHHHHHHHHHHHcC
Confidence 47777643333333455566653 478988654332 233456688898 56789999999999988753
No 243
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=71.19 E-value=55 Score=26.91 Aligned_cols=65 Identities=17% Similarity=0.219 Sum_probs=43.3
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCC-------CCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEE
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLM-------PCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFL 79 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~m-------p~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l 79 (162)
+..+..+.+.+ ...|+|+++-.. ..-+-..+.+.++. ..+|||+ ..-...+.+..+++.|++.++
T Consensus 143 ~~~e~a~~l~e--AGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~----~~IPVI~-G~V~t~e~A~~~~~aGaDgV~ 214 (369)
T TIGR01304 143 NAREIAPIVVK--AGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGE----LDVPVIA-GGVNDYTTALHLMRTGAAGVI 214 (369)
T ss_pred CHHHHHHHHHH--CCCCEEEEeccchhhhccCCCCCHHHHHHHHHH----CCCCEEE-eCCCCHHHHHHHHHcCCCEEE
Confidence 45566677777 789999987321 22233333344433 3689886 556678888999999999987
No 244
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=71.18 E-value=43 Score=25.48 Aligned_cols=67 Identities=10% Similarity=-0.009 Sum_probs=46.7
Q ss_pred CHHHHHHHHHhhCCCc-cEEEEcCCCCCC-CH--HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 8 NGLQAWKILEDLMDQI-DLVLTEVLMPCL-SG--IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~-DlvllD~~mp~~-~g--~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
+..+.++.+++ ..+ .+|++|+.--++ .| +++++.+++. ..|+|.-..-...++..++.+.|+++.|.
T Consensus 147 ~~~e~~~~l~~--~g~~~ii~tdI~~dGt~~G~d~el~~~~~~~----~~~viasGGv~s~~Dl~~l~~~G~~gviv 217 (232)
T PRK13586 147 EVIDGIKKVNE--LELLGIIFTYISNEGTTKGIDYNVKDYARLI----RGLKEYAGGVSSDADLEYLKNVGFDYIIV 217 (232)
T ss_pred CHHHHHHHHHh--cCCCEEEEecccccccCcCcCHHHHHHHHhC----CCCEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence 45566666766 444 789999976554 44 5677777653 23466655666778888888999998864
No 245
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=71.15 E-value=21 Score=26.58 Aligned_cols=66 Identities=6% Similarity=0.116 Sum_probs=40.4
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHH
Q 044790 21 DQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNL 91 (162)
Q Consensus 21 ~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~ 91 (162)
..+. ++.+.+-..+.+++++.+++.. +++ +|=...--+.+.+..|.++|++=.++.-++++-+...
T Consensus 32 gGi~--~iEiT~~t~~a~~~I~~l~~~~--p~~-~vGAGTV~~~e~a~~a~~aGA~FivSP~~~~~v~~~~ 97 (196)
T PF01081_consen 32 GGIR--AIEITLRTPNALEAIEALRKEF--PDL-LVGAGTVLTAEQAEAAIAAGAQFIVSPGFDPEVIEYA 97 (196)
T ss_dssp TT----EEEEETTSTTHHHHHHHHHHHH--TTS-EEEEES--SHHHHHHHHHHT-SEEEESS--HHHHHHH
T ss_pred CCCC--EEEEecCCccHHHHHHHHHHHC--CCC-eeEEEeccCHHHHHHHHHcCCCEEECCCCCHHHHHHH
Confidence 4444 4566666678999999998764 564 3444445588899999999998666555555444433
No 246
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=71.04 E-value=30 Score=27.41 Aligned_cols=53 Identities=21% Similarity=0.267 Sum_probs=42.8
Q ss_pred HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHH
Q 044790 38 IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQH 94 (162)
Q Consensus 38 ~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~ 94 (162)
.+.++++|+.. +..+|.+-. ...+...++++.|+|-.+.-.++++++...+..
T Consensus 187 ~~ai~~~r~~~--~~~kIeVEv--~tl~ea~eal~~gaDiI~LDnm~~e~vk~av~~ 239 (289)
T PRK07896 187 VAALRAVRAAA--PDLPCEVEV--DSLEQLDEVLAEGAELVLLDNFPVWQTQEAVQR 239 (289)
T ss_pred HHHHHHHHHhC--CCCCEEEEc--CCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHH
Confidence 45677777754 567766665 467788999999999999999999999999984
No 247
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=70.60 E-value=14 Score=26.22 Aligned_cols=46 Identities=15% Similarity=0.294 Sum_probs=29.7
Q ss_pred HHHHhhCCCccEEEEcCCCCCCCHH--------HHHHHHHccCCCCCCcEEEEecCCC
Q 044790 14 KILEDLMDQIDLVLTEVLMPCLSGI--------GLLRKIMNHKTCKNIPVIMMSSHDS 63 (162)
Q Consensus 14 ~~l~~~~~~~DlvllD~~mp~~~g~--------~~~~~ir~~~~~~~~piI~lt~~~~ 63 (162)
+.+.. .+||+||+.+-.-+.... .++++||+.. +.+||++++....
T Consensus 51 ~~~~~--~~pd~vii~~G~ND~~~~~~~~~~~~~~i~~i~~~~--p~~~iil~~~~~~ 104 (177)
T cd01844 51 ELLRD--VPADLYIIDCGPNIVGAEAMVRERLGPLVKGLRETH--PDTPILLVSPRYC 104 (177)
T ss_pred HHHHh--cCCCEEEEEeccCCCccHHHHHHHHHHHHHHHHHHC--cCCCEEEEecCCC
Confidence 33444 689999997655443222 3456666654 7899999886543
No 248
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=70.46 E-value=51 Score=25.97 Aligned_cols=73 Identities=18% Similarity=0.141 Sum_probs=51.0
Q ss_pred cCHHHHHHHHHhhCCCccEEEEcCCC-----CCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceE-Ee
Q 044790 7 ENGLQAWKILEDLMDQIDLVLTEVLM-----PCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYF-LV 80 (162)
Q Consensus 7 ~~~~eal~~l~~~~~~~DlvllD~~m-----p~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~-l~ 80 (162)
.+.++|....+ ..+|.|.+.-.- .+...++++..+++.- ...+|||.-..-.....+.+++..||+.. +-
T Consensus 181 ~s~~~a~~a~~---~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~-~~~ipvia~GGI~~~~d~~kal~lGAd~V~ig 256 (299)
T cd02809 181 LTPEDALRAVD---AGADGIVVSNHGGRQLDGAPATIDALPEIVAAV-GGRIEVLLDGGIRRGTDVLKALALGADAVLIG 256 (299)
T ss_pred CCHHHHHHHHH---CCCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHh-cCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEc
Confidence 45666655443 578888875321 2345677888886532 03699999999999999999999999988 44
Q ss_pred CCC
Q 044790 81 KPI 83 (162)
Q Consensus 81 KP~ 83 (162)
.|+
T Consensus 257 ~~~ 259 (299)
T cd02809 257 RPF 259 (299)
T ss_pred HHH
Confidence 443
No 249
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=70.30 E-value=45 Score=25.34 Aligned_cols=71 Identities=10% Similarity=0.141 Sum_probs=48.7
Q ss_pred CCccEEEEcCCCCC-CCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCC--------CHHHHHHH
Q 044790 21 DQIDLVLTEVLMPC-LSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPI--------RKNELQNL 91 (162)
Q Consensus 21 ~~~DlvllD~~mp~-~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~--------~~~~L~~~ 91 (162)
..+.++| .+|. ..|++.++.|... .+++- +|.-........|.++|+ +|+..-+ +...+...
T Consensus 80 ~~~nv~V---KIP~T~~Gl~Ai~~L~~~----Gi~vn-~T~ifs~~Qa~~Aa~aGa-~yvsPyvgRi~d~g~D~~~~i~~ 150 (222)
T PRK12656 80 CGDDVYI---KVPVTPAGLAAIKTLKAE----GYHIT-ATAIYTVFQGLLAIEAGA-DYLAPYYNRMENLNIDSNAVIGQ 150 (222)
T ss_pred hCCCEEE---EeCCCHHHHHHHHHHHHC----CCceE-EeeeCCHHHHHHHHHCCC-CEEecccchhhhcCCCHHHHHHH
Confidence 3455665 5564 4799999999763 56665 555567788889999999 8877633 44566666
Q ss_pred HHHHHHhcc
Q 044790 92 WQHVWRKCH 100 (162)
Q Consensus 92 i~~~l~~~~ 100 (162)
|...+.+..
T Consensus 151 i~~~~~~~~ 159 (222)
T PRK12656 151 LAEAIDREN 159 (222)
T ss_pred HHHHHHhcC
Confidence 676666543
No 250
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=70.21 E-value=28 Score=24.39 Aligned_cols=44 Identities=11% Similarity=0.216 Sum_probs=28.1
Q ss_pred HHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecC
Q 044790 9 GLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSH 61 (162)
Q Consensus 9 ~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~ 61 (162)
..++++.++. ..+|+||+|. ++... .....++. .+..||+++..
T Consensus 80 ~~~~~~~~~~--~~~D~iiIDt--aG~~~-~~~~~~~~----Ad~~ivv~tpe 123 (148)
T cd03114 80 TPEVIRVLDA--AGFDVIIVET--VGVGQ-SEVDIASM----ADTTVVVMAPG 123 (148)
T ss_pred HHHHHHHHHh--cCCCEEEEEC--CccCh-hhhhHHHh----CCEEEEEECCC
Confidence 3566676666 6899999998 66553 33344443 45666666654
No 251
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=70.21 E-value=44 Score=25.16 Aligned_cols=79 Identities=16% Similarity=0.132 Sum_probs=52.6
Q ss_pred CHHHHHHHHHhhCCCccE-EEEcCCCC---CCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe---
Q 044790 8 NGLQAWKILEDLMDQIDL-VLTEVLMP---CLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV--- 80 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~Dl-vllD~~mp---~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~--- 80 (162)
+..+..+.+.. ..++- ++.|+..- ....+++++.+++. ..+||++...-...+.+.+.+..|+++++.
T Consensus 150 ~~~~~~~~~~~--~G~~~i~~~~~~~~g~~~g~~~~~i~~i~~~---~~iPvia~GGI~~~~di~~~~~~Ga~gv~vgsa 224 (241)
T PRK13585 150 TPVEAAKRFEE--LGAGSILFTNVDVEGLLEGVNTEPVKELVDS---VDIPVIASGGVTTLDDLRALKEAGAAGVVVGSA 224 (241)
T ss_pred CHHHHHHHHHH--cCCCEEEEEeecCCCCcCCCCHHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHHHcCCCEEEEEHH
Confidence 44555566665 56664 44465321 22347788888765 369999999888888899999999998754
Q ss_pred ---CCCCHHHHHHH
Q 044790 81 ---KPIRKNELQNL 91 (162)
Q Consensus 81 ---KP~~~~~L~~~ 91 (162)
.|+..+++...
T Consensus 225 ~~~~~~~~~~~~~~ 238 (241)
T PRK13585 225 LYKGKFTLEEAIEA 238 (241)
T ss_pred HhcCCcCHHHHHHH
Confidence 45555554433
No 252
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=69.92 E-value=31 Score=27.48 Aligned_cols=53 Identities=11% Similarity=0.194 Sum_probs=42.2
Q ss_pred HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHH
Q 044790 38 IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQH 94 (162)
Q Consensus 38 ~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~ 94 (162)
.+.++++|... +..+|.+=.. ..+.+.+++++|+|-.+.--++++++.+.+..
T Consensus 196 ~~av~~~r~~~--~~~kIeVEv~--sleea~ea~~~gaDiI~LDn~s~e~~~~av~~ 248 (296)
T PRK09016 196 RQAVEKAFWLH--PDVPVEVEVE--NLDELDQALKAGADIIMLDNFTTEQMREAVKR 248 (296)
T ss_pred HHHHHHHHHhC--CCCCEEEEeC--CHHHHHHHHHcCCCEEEeCCCChHHHHHHHHh
Confidence 35566777654 6677665554 58889999999999999999999999999985
No 253
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=69.90 E-value=25 Score=26.56 Aligned_cols=71 Identities=15% Similarity=0.120 Sum_probs=49.1
Q ss_pred cCHHHHHHHHHhhCCCcc-EEEEcCCCCC---CCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCC
Q 044790 7 ENGLQAWKILEDLMDQID-LVLTEVLMPC---LSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKP 82 (162)
Q Consensus 7 ~~~~eal~~l~~~~~~~D-lvllD~~mp~---~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP 82 (162)
.+..+..+.+.+ ..++ +.+.|..... ..-++.++.|.+. ..+|+++=..-.+.+.+..++..||+..+.--
T Consensus 32 ~~~~e~a~~~~~--~G~~~l~i~dl~~~~~~~~~~~~~i~~i~~~---~~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs 106 (241)
T PRK13585 32 GDPVEVAKRWVD--AGAETLHLVDLDGAFEGERKNAEAIEKIIEA---VGVPVQLGGGIRSAEDAASLLDLGVDRVILGT 106 (241)
T ss_pred CCHHHHHHHHHH--cCCCEEEEEechhhhcCCcccHHHHHHHHHH---cCCcEEEcCCcCCHHHHHHHHHcCCCEEEECh
Confidence 477787788776 5554 5566776432 2335566666553 46889986666778889999999999877654
No 254
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=69.54 E-value=55 Score=26.02 Aligned_cols=62 Identities=13% Similarity=0.152 Sum_probs=44.8
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeC
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVK 81 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~K 81 (162)
...+.++.+.+ ..+++|.+....| .+++++++.. .+.|+... ...+....+.+.|+|.++..
T Consensus 75 ~~~~~~~~~~~--~~v~~v~~~~g~p----~~~i~~lk~~----g~~v~~~v--~s~~~a~~a~~~GaD~Ivv~ 136 (307)
T TIGR03151 75 FVDELVDLVIE--EKVPVVTTGAGNP----GKYIPRLKEN----GVKVIPVV--ASVALAKRMEKAGADAVIAE 136 (307)
T ss_pred CHHHHHHHHHh--CCCCEEEEcCCCc----HHHHHHHHHc----CCEEEEEc--CCHHHHHHHHHcCCCEEEEE
Confidence 44666777766 7899999876555 3678888764 45665444 35677889999999999863
No 255
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=69.49 E-value=12 Score=28.85 Aligned_cols=56 Identities=16% Similarity=0.157 Sum_probs=43.0
Q ss_pred HHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeC-----CCCHHHHHHHHHHHHH
Q 044790 39 GLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVK-----PIRKNELQNLWQHVWR 97 (162)
Q Consensus 39 ~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~K-----P~~~~~L~~~i~~~l~ 97 (162)
..++.|++. .++|||+=.+-..+.....+++.|+|+.|.- --++-.+.+++.....
T Consensus 172 ~~l~iiie~---a~VPviVDAGiG~pSdAa~aMElG~DaVL~NTAiA~A~DPv~MA~Af~~Av~ 232 (262)
T COG2022 172 YNLEIIIEE---ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIARAKDPVAMARAFALAVE 232 (262)
T ss_pred HHHHHHHHh---CCCCEEEeCCCCChhHHHHHHhcccceeehhhHhhccCChHHHHHHHHHHHH
Confidence 457777765 4899999999999999999999999999865 3455556666555443
No 256
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=69.46 E-value=6.3 Score=28.85 Aligned_cols=62 Identities=24% Similarity=0.189 Sum_probs=42.4
Q ss_pred HHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEE
Q 044790 9 GLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFL 79 (162)
Q Consensus 9 ~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l 79 (162)
.+.+++.+++ .+||+|=+ ||+ --..+++++++. ..+|||.=.=-...+++.+++++||.+.=
T Consensus 106 l~~~~~~i~~--~~PD~vEi---lPg-~~p~vi~~i~~~---~~~PiIAGGLI~~~e~v~~al~aGa~aVS 167 (175)
T PF04309_consen 106 LETGIKQIEQ--SKPDAVEI---LPG-VMPKVIKKIREE---TNIPIIAGGLIRTKEDVEEALKAGADAVS 167 (175)
T ss_dssp HHHHHHHHHH--HT-SEEEE---ESC-CHHHHHCCCCCC---CSS-EEEESS--SHHHHHHHCCTTCEEEE
T ss_pred HHHHHHHHhh--cCCCEEEE---chH-HHHHHHHHHHHh---cCCCEEeecccCCHHHHHHHHHcCCEEEE
Confidence 3456777877 78998854 687 444666666553 47888866666788999999999998864
No 257
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=69.26 E-value=50 Score=25.77 Aligned_cols=67 Identities=12% Similarity=0.115 Sum_probs=45.9
Q ss_pred EEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 4 IAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 4 ~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
..+++.+|+++.++. .+|.|.+|-.-| +.++++.+.-. ..+|+++ ++.-..+.+....+.|++.+-.
T Consensus 183 vev~t~eea~~A~~~---gaDyI~ld~~~~-----e~lk~~v~~~~-~~ipi~A-sGGI~~~ni~~~a~~Gvd~Isv 249 (265)
T TIGR00078 183 VEVESLEEAEEAAEA---GADIIMLDNMKP-----EEIKEAVQLLK-GRVLLEA-SGGITLDNLEEYAETGVDVISS 249 (265)
T ss_pred EEeCCHHHHHHHHHc---CCCEEEECCCCH-----HHHHHHHHHhc-CCCcEEE-ECCCCHHHHHHHHHcCCCEEEe
Confidence 478899999888764 789999986444 44444433110 2367654 4456788888999999998754
No 258
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=69.23 E-value=46 Score=25.02 Aligned_cols=86 Identities=16% Similarity=0.133 Sum_probs=53.1
Q ss_pred EEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCc--EEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 3 VIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIP--VIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 3 v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~p--iI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|....+.++++...+.. ..--+=++.+.|-.-+.++.++.|++.. +.-| +|=...--+.+.+.++.++|++=.+
T Consensus 18 vir~~~~~~a~~~~~al-~~~Gi~~iEit~~~~~a~~~i~~l~~~~--~~~p~~~vGaGTV~~~~~~~~a~~aGA~Fiv- 93 (213)
T PRK06552 18 VVRGESKEEALKISLAV-IKGGIKAIEVTYTNPFASEVIKELVELY--KDDPEVLIGAGTVLDAVTARLAILAGAQFIV- 93 (213)
T ss_pred EEECCCHHHHHHHHHHH-HHCCCCEEEEECCCccHHHHHHHHHHHc--CCCCCeEEeeeeCCCHHHHHHHHHcCCCEEE-
Confidence 44556677777666543 2233445566666677999999998753 3222 3333344578889999999997555
Q ss_pred CCCCHHHHHHHH
Q 044790 81 KPIRKNELQNLW 92 (162)
Q Consensus 81 KP~~~~~L~~~i 92 (162)
-|.-..++.+..
T Consensus 94 sP~~~~~v~~~~ 105 (213)
T PRK06552 94 SPSFNRETAKIC 105 (213)
T ss_pred CCCCCHHHHHHH
Confidence 554445554443
No 259
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=69.13 E-value=48 Score=26.72 Aligned_cols=65 Identities=15% Similarity=0.129 Sum_probs=43.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHHHh
Q 044790 24 DLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVWRK 98 (162)
Q Consensus 24 DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 98 (162)
|+.++= ..|..-|+.+++.+. ..+|||.... . ...+.+..|..+++..|.+.++|...|..++..
T Consensus 302 dv~v~~-s~~e~~~~~llEAmA-----~G~PVIas~~-~---g~~e~i~~~~~G~lv~~~d~~~la~~i~~ll~~ 366 (396)
T cd03818 302 DVHVYL-TYPFVLSWSLLEAMA-----CGCLVVGSDT-A---PVREVITDGENGLLVDFFDPDALAAAVIELLDD 366 (396)
T ss_pred cEEEEc-CcccccchHHHHHHH-----CCCCEEEcCC-C---CchhhcccCCceEEcCCCCHHHHHHHHHHHHhC
Confidence 444432 234444556666663 4788886433 2 233445678899999999999999999988764
No 260
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=68.98 E-value=44 Score=25.93 Aligned_cols=73 Identities=14% Similarity=0.155 Sum_probs=44.9
Q ss_pred HHHHHHHHHhhCCCccEEEEcCCC----CC---CCHHHHHHHHHccCCCCCCcEEEEecCC-C-----HHHHHHHHHcCC
Q 044790 9 GLQAWKILEDLMDQIDLVLTEVLM----PC---LSGIGLLRKIMNHKTCKNIPVIMMSSHD-S-----MSIVFKCLSKGA 75 (162)
Q Consensus 9 ~~eal~~l~~~~~~~DlvllD~~m----p~---~~g~~~~~~ir~~~~~~~~piI~lt~~~-~-----~~~~~~a~~~Ga 75 (162)
-..|++.+.+. ...+++||..-. |- .--+..+..+++. .++||++-+.+. . ......|...||
T Consensus 148 ~~~Ave~i~~~-Gn~~i~l~~rG~s~y~~~~~~~~dl~~i~~lk~~---~~~pV~~ds~Hs~G~r~~~~~~~~aAva~Ga 223 (260)
T TIGR01361 148 WLYAAEYILSS-GNGNVILCERGIRTFEKATRNTLDLSAVPVLKKE---THLPIIVDPSHAAGRRDLVIPLAKAAIAAGA 223 (260)
T ss_pred HHHHHHHHHHc-CCCcEEEEECCCCCCCCCCcCCcCHHHHHHHHHh---hCCCEEEcCCCCCCccchHHHHHHHHHHcCC
Confidence 45677777652 456899987622 21 1224556666653 368999845543 2 445567888999
Q ss_pred ce-EEeCCCCH
Q 044790 76 VY-FLVKPIRK 85 (162)
Q Consensus 76 ~~-~l~KP~~~ 85 (162)
++ +|-|-+++
T Consensus 224 ~gl~iE~H~t~ 234 (260)
T TIGR01361 224 DGLMIEVHPDP 234 (260)
T ss_pred CEEEEEeCCCc
Confidence 98 67775443
No 261
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=68.65 E-value=38 Score=26.31 Aligned_cols=39 Identities=23% Similarity=0.326 Sum_probs=31.6
Q ss_pred HHHHHHHHccCCCC-CCcEEEEecCCCHHHHHHHHHcCCceE
Q 044790 38 IGLLRKIMNHKTCK-NIPVIMMSSHDSMSIVFKCLSKGAVYF 78 (162)
Q Consensus 38 ~~~~~~ir~~~~~~-~~piI~lt~~~~~~~~~~a~~~Ga~~~ 78 (162)
++.++.|++.- + ++|||....-...+.+.+++..||+..
T Consensus 230 ~~~v~~i~~~~--~~~ipiia~GGI~~~~da~~~l~~GAd~V 269 (289)
T cd02810 230 LRWVARLAARL--QLDIPIIGVGGIDSGEDVLEMLMAGASAV 269 (289)
T ss_pred HHHHHHHHHhc--CCCCCEEEECCCCCHHHHHHHHHcCccHh
Confidence 55677776642 3 799999999999999999999998865
No 262
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=68.36 E-value=55 Score=25.52 Aligned_cols=68 Identities=13% Similarity=0.136 Sum_probs=46.1
Q ss_pred EEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHH-HHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 4 IAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIG-LLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 4 ~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~-~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
..+++.+|+.+.+.. .+|+|.+|-.-|. .+. +++.++.. +.+||. .++.-..+.+....+.|++.+..
T Consensus 186 vev~t~eea~~A~~~---gaD~I~ld~~~~e--~l~~~v~~i~~~---~~i~i~-asGGIt~~ni~~~a~~Gad~Isv 254 (269)
T cd01568 186 VEVETLEEAEEALEA---GADIIMLDNMSPE--ELKEAVKLLKGL---PRVLLE-ASGGITLENIRAYAETGVDVIST 254 (269)
T ss_pred EecCCHHHHHHHHHc---CCCEEEECCCCHH--HHHHHHHHhccC---CCeEEE-EECCCCHHHHHHHHHcCCCEEEE
Confidence 477899999888764 6899999975551 221 22333321 356644 55556788889999999998853
No 263
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=68.03 E-value=60 Score=25.85 Aligned_cols=66 Identities=17% Similarity=0.031 Sum_probs=46.7
Q ss_pred EEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEE
Q 044790 4 IAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFL 79 (162)
Q Consensus 4 ~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l 79 (162)
+.+++.+++.+.++. .+|+|++|-+-|. ++-+.+.... .-.++-.++.-..+.+.+..+.|+|-..
T Consensus 210 VEvetleea~eA~~a---GaDiImLDnmspe----~l~~av~~~~---~~~~lEaSGGIt~~ni~~yA~tGVD~IS 275 (294)
T PRK06978 210 IEVETLAQLETALAH---GAQSVLLDNFTLD----MMREAVRVTA---GRAVLEVSGGVNFDTVRAFAETGVDRIS 275 (294)
T ss_pred EEcCCHHHHHHHHHc---CCCEEEECCCCHH----HHHHHHHhhc---CCeEEEEECCCCHHHHHHHHhcCCCEEE
Confidence 477899999999875 7899999954333 3333333222 2346778888899999998899998653
No 264
>PRK09982 universal stress protein UspD; Provisional
Probab=67.97 E-value=18 Score=24.77 Aligned_cols=48 Identities=15% Similarity=0.264 Sum_probs=26.3
Q ss_pred cCHHHHHHHHHhhCCCccEEEEcCCCCCCCHH-HHHHHHHccCCCCCCcEEEEe
Q 044790 7 ENGLQAWKILEDLMDQIDLVLTEVLMPCLSGI-GLLRKIMNHKTCKNIPVIMMS 59 (162)
Q Consensus 7 ~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~-~~~~~ir~~~~~~~~piI~lt 59 (162)
+-.++.++..++ ..+|||+|.....+...+ .+.+.+-+. ..+||+++-
T Consensus 90 ~p~~~I~~~A~~--~~aDLIVmG~~~~~~~~~~~va~~V~~~---s~~pVLvv~ 138 (142)
T PRK09982 90 EMPETLLEIMQK--EQCDLLVCGHHHSFINRLMPAYRGMINK---MSADLLIVP 138 (142)
T ss_pred CHHHHHHHHHHH--cCCCEEEEeCChhHHHHHHHHHHHHHhc---CCCCEEEec
Confidence 334555555566 789999998642222111 123333322 578888763
No 265
>PLN02645 phosphoglycolate phosphatase
Probab=67.81 E-value=42 Score=26.53 Aligned_cols=51 Identities=8% Similarity=-0.020 Sum_probs=34.6
Q ss_pred CccEEEEcCC-------CCCCCHHHHHHHHHccCCCCCCcEEEEecCC---CHHHHHHHHHcCCc
Q 044790 22 QIDLVLTEVL-------MPCLSGIGLLRKIMNHKTCKNIPVIMMSSHD---SMSIVFKCLSKGAV 76 (162)
Q Consensus 22 ~~DlvllD~~-------mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~---~~~~~~~a~~~Ga~ 76 (162)
.++++++|+. -+--...+++++||. ...+++++|.+. ......+....|+.
T Consensus 27 ~~~~~~~D~DGtl~~~~~~~~ga~e~l~~lr~----~g~~~~~~TN~~~~~~~~~~~~l~~lGi~ 87 (311)
T PLN02645 27 SVETFIFDCDGVIWKGDKLIEGVPETLDMLRS----MGKKLVFVTNNSTKSRAQYGKKFESLGLN 87 (311)
T ss_pred hCCEEEEeCcCCeEeCCccCcCHHHHHHHHHH----CCCEEEEEeCCCCCCHHHHHHHHHHCCCC
Confidence 5899999973 122334788889887 468999999866 33444444567753
No 266
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=67.61 E-value=8.3 Score=26.50 Aligned_cols=27 Identities=37% Similarity=0.369 Sum_probs=23.6
Q ss_pred EEEEecCCCHHHHHHHHHcCCceEEeC
Q 044790 55 VIMMSSHDSMSIVFKCLSKGAVYFLVK 81 (162)
Q Consensus 55 iI~lt~~~~~~~~~~a~~~Ga~~~l~K 81 (162)
-++++++.+++.+.+|+..|+|+.+.-
T Consensus 34 rv~CsGrvn~~fvl~Al~~GaDGV~v~ 60 (132)
T COG1908 34 RVMCSGRVNPEFVLKALRKGADGVLVA 60 (132)
T ss_pred EeeccCccCHHHHHHHHHcCCCeEEEe
Confidence 356888999999999999999998765
No 267
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=67.60 E-value=48 Score=24.59 Aligned_cols=64 Identities=22% Similarity=0.223 Sum_probs=44.8
Q ss_pred HHHHHHHHhhCCCccEEEEcCC-----CCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHc-CCceE
Q 044790 10 LQAWKILEDLMDQIDLVLTEVL-----MPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSK-GAVYF 78 (162)
Q Consensus 10 ~eal~~l~~~~~~~DlvllD~~-----mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~-Ga~~~ 78 (162)
.+.++.+.+ ..+|.|.+.-. ..+...++.++.+++. ..+||+.-..-...+.+.+++.. |++.+
T Consensus 141 ~~~~~~l~~--~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~---~~ipvi~~Ggi~~~~d~~~~l~~~gad~V 210 (231)
T cd02801 141 LELAKALED--AGASALTVHGRTREQRYSGPADWDYIAEIKEA---VSIPVIANGDIFSLEDALRCLEQTGVDGV 210 (231)
T ss_pred HHHHHHHHH--hCCCEEEECCCCHHHcCCCCCCHHHHHHHHhC---CCCeEEEeCCCCCHHHHHHHHHhcCCCEE
Confidence 344555565 56788766442 1222347788888874 57899988888889999999997 78865
No 268
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=67.60 E-value=59 Score=26.27 Aligned_cols=70 Identities=13% Similarity=0.063 Sum_probs=49.3
Q ss_pred EcCHHHHHHHHHhhCCCccEEEEcCCC-----------CCCC--HHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHH
Q 044790 6 VENGLQAWKILEDLMDQIDLVLTEVLM-----------PCLS--GIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLS 72 (162)
Q Consensus 6 a~~~~eal~~l~~~~~~~DlvllD~~m-----------p~~~--g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~ 72 (162)
+.+.++|..+++ ..+|++.+.+.- .+.. ++..+..++.. ..+|||.-..-....++.+|+.
T Consensus 148 V~t~e~a~~l~~---aGad~i~vg~~~G~~~~t~~~~g~~~~~w~l~ai~~~~~~---~~ipVIAdGGI~~~~Di~KaLa 221 (326)
T PRK05458 148 VGTPEAVRELEN---AGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKA---ARKPIIADGGIRTHGDIAKSIR 221 (326)
T ss_pred cCCHHHHHHHHH---cCcCEEEECCCCCcccccccccCCCCCccHHHHHHHHHHH---cCCCEEEeCCCCCHHHHHHHHH
Confidence 567777766655 468887754211 1122 44457777654 3689999999999999999999
Q ss_pred cCCceEEeC
Q 044790 73 KGAVYFLVK 81 (162)
Q Consensus 73 ~Ga~~~l~K 81 (162)
+||+.+..=
T Consensus 222 ~GA~aV~vG 230 (326)
T PRK05458 222 FGATMVMIG 230 (326)
T ss_pred hCCCEEEec
Confidence 999987543
No 269
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=67.52 E-value=51 Score=24.82 Aligned_cols=84 Identities=12% Similarity=0.009 Sum_probs=56.5
Q ss_pred EcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEE-----e
Q 044790 6 VENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFL-----V 80 (162)
Q Consensus 6 a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l-----~ 80 (162)
+.+..|+.+.++ ..+|+|=+- -.+.-|.+.++.++..- +++|++.+. --..+.+.+.++.|++.+- .
T Consensus 116 ~~T~~E~~~A~~---~Gad~vklF--Pa~~~G~~~ik~l~~~~--p~ip~~atG-GI~~~N~~~~l~aGa~~vavgs~l~ 187 (213)
T PRK06552 116 CMTVTEIVTALE---AGSEIVKLF--PGSTLGPSFIKAIKGPL--PQVNVMVTG-GVNLDNVKDWFAAGADAVGIGGELN 187 (213)
T ss_pred cCCHHHHHHHHH---cCCCEEEEC--CcccCCHHHHHHHhhhC--CCCEEEEEC-CCCHHHHHHHHHCCCcEEEEchHHh
Confidence 456778877765 478888872 12446788899998754 789988555 4567889999999988763 2
Q ss_pred CCC---CHHHHHHHHHHHHH
Q 044790 81 KPI---RKNELQNLWQHVWR 97 (162)
Q Consensus 81 KP~---~~~~L~~~i~~~l~ 97 (162)
+.. +.+++....++++.
T Consensus 188 ~~~~~~~~~~i~~~a~~~~~ 207 (213)
T PRK06552 188 KLASQGDFDLITEKAKKYMS 207 (213)
T ss_pred CccccCCHHHHHHHHHHHHH
Confidence 221 23556666655544
No 270
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=67.28 E-value=62 Score=25.72 Aligned_cols=66 Identities=14% Similarity=0.058 Sum_probs=46.3
Q ss_pred EEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEE
Q 044790 4 IAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFL 79 (162)
Q Consensus 4 ~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l 79 (162)
+.+++.+++.+.+.. .+|+|++|-+-|. ++-+.+.... .-.++-.++.-..+.+......|+|-..
T Consensus 202 VEv~tleea~~a~~a---gaDiImLDnmspe----~l~~av~~~~---~~~~leaSGGI~~~ni~~yA~tGVD~Is 267 (290)
T PRK06559 202 VEVESLAAAEEAAAA---GADIIMLDNMSLE----QIEQAITLIA---GRSRIECSGNIDMTTISRFRGLAIDYVS 267 (290)
T ss_pred EECCCHHHHHHHHHc---CCCEEEECCCCHH----HHHHHHHHhc---CceEEEEECCCCHHHHHHHHhcCCCEEE
Confidence 477899999998875 6899999954333 3333332222 2346778888899999998899998653
No 271
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=67.19 E-value=33 Score=27.10 Aligned_cols=87 Identities=13% Similarity=0.208 Sum_probs=56.6
Q ss_pred EcCHHHHHHHHHhhCCCccEEEEcCC----------CCCCCHHHHHHHHHccCCCCCCcEEEEecCC-CHHHHHHHHHcC
Q 044790 6 VENGLQAWKILEDLMDQIDLVLTEVL----------MPCLSGIGLLRKIMNHKTCKNIPVIMMSSHD-SMSIVFKCLSKG 74 (162)
Q Consensus 6 a~~~~eal~~l~~~~~~~DlvllD~~----------mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~-~~~~~~~a~~~G 74 (162)
.+++++|.+++++ ..+|.+=+-+- -|..+ ++.+++|++.- +.+|+++=.+.. ..+.+.++.+.|
T Consensus 154 ~TdP~~a~~Fv~~--TgvD~LAvaiGt~HG~y~~~~~p~Ld-~~~L~~I~~~~--~~iPLVlHGgSG~~~e~~~~ai~~G 228 (287)
T PF01116_consen 154 YTDPEEAKEFVEE--TGVDALAVAIGTAHGMYKGGKKPKLD-FDRLKEIREAV--PDIPLVLHGGSGLPDEQIRKAIKNG 228 (287)
T ss_dssp SSSHHHHHHHHHH--HTTSEEEE-SSSBSSSBSSSSSTC---HHHHHHHHHHH--HTSEEEESSCTTS-HHHHHHHHHTT
T ss_pred ccCHHHHHHHHHH--hCCCEEEEecCccccccCCCCCcccC-HHHHHHHHHhc--CCCCEEEECCCCCCHHHHHHHHHcC
Confidence 4689999999999 88999887773 23333 88899998753 378988776655 455788899999
Q ss_pred CceEEeCCCCHHHHHHHHHHHHH
Q 044790 75 AVYFLVKPIRKNELQNLWQHVWR 97 (162)
Q Consensus 75 a~~~l~KP~~~~~L~~~i~~~l~ 97 (162)
+..+=.-..-.......++..+.
T Consensus 229 i~KiNi~T~~~~a~~~~~~~~~~ 251 (287)
T PF01116_consen 229 ISKINIGTELRRAFTDALREYLA 251 (287)
T ss_dssp EEEEEESHHHHHHHHHHHHHHHH
T ss_pred ceEEEEehHHHHHHHHHHHHHHH
Confidence 77663332222333334444333
No 272
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=66.66 E-value=51 Score=24.58 Aligned_cols=87 Identities=10% Similarity=0.016 Sum_probs=51.6
Q ss_pred EEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCC
Q 044790 3 VIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKP 82 (162)
Q Consensus 3 v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP 82 (162)
|....+.+++++.++.. ..--+=++.+.+-..++.+.++.|++.. +..-+|=...--..+.+..++++|++..++ |
T Consensus 15 v~r~~~~~~~~~~~~a~-~~gGi~~iEvt~~~~~~~~~i~~l~~~~--~~~~~iGaGTV~~~~~~~~a~~aGA~fivs-p 90 (206)
T PRK09140 15 ILRGITPDEALAHVGAL-IEAGFRAIEIPLNSPDPFDSIAALVKAL--GDRALIGAGTVLSPEQVDRLADAGGRLIVT-P 90 (206)
T ss_pred EEeCCCHHHHHHHHHHH-HHCCCCEEEEeCCCccHHHHHHHHHHHc--CCCcEEeEEecCCHHHHHHHHHcCCCEEEC-C
Confidence 34455666666665542 1222335566666668899999997754 321123233344678889999999965554 6
Q ss_pred CCHHHHHHHHH
Q 044790 83 IRKNELQNLWQ 93 (162)
Q Consensus 83 ~~~~~L~~~i~ 93 (162)
....++.+..+
T Consensus 91 ~~~~~v~~~~~ 101 (206)
T PRK09140 91 NTDPEVIRRAV 101 (206)
T ss_pred CCCHHHHHHHH
Confidence 55555555444
No 273
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=66.65 E-value=25 Score=28.33 Aligned_cols=88 Identities=10% Similarity=0.106 Sum_probs=59.0
Q ss_pred EEEcCHHHHHHHHHhhCCCccEEEEcCCCC-----CCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceE
Q 044790 4 IAVENGLQAWKILEDLMDQIDLVLTEVLMP-----CLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYF 78 (162)
Q Consensus 4 ~~a~~~~eal~~l~~~~~~~DlvllD~~mp-----~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~ 78 (162)
+++.|...|-++..- .+ +.++=+--| +..--+.++.+.+. +.+|||+=.+-..++++..++++|+++.
T Consensus 203 yc~~d~~~a~~l~~~---g~-~avmPl~~pIGsg~gv~~p~~i~~~~e~---~~vpVivdAGIg~~sda~~AmelGadgV 275 (326)
T PRK11840 203 YCSDDPIAAKRLEDA---GA-VAVMPLGAPIGSGLGIQNPYTIRLIVEG---ATVPVLVDAGVGTASDAAVAMELGCDGV 275 (326)
T ss_pred EeCCCHHHHHHHHhc---CC-EEEeeccccccCCCCCCCHHHHHHHHHc---CCCcEEEeCCCCCHHHHHHHHHcCCCEE
Confidence 466666666554443 33 333321111 22234567777665 5799999999999999999999999998
Q ss_pred Ee-----CCCCHHHHHHHHHHHHHh
Q 044790 79 LV-----KPIRKNELQNLWQHVWRK 98 (162)
Q Consensus 79 l~-----KP~~~~~L~~~i~~~l~~ 98 (162)
+. |--++-.+.++++.....
T Consensus 276 L~nSaIa~a~dPv~Ma~A~~~av~a 300 (326)
T PRK11840 276 LMNTAIAEAKNPVLMARAMKLAVEA 300 (326)
T ss_pred EEcceeccCCCHHHHHHHHHHHHHH
Confidence 64 567778888888776553
No 274
>PF13941 MutL: MutL protein
Probab=66.52 E-value=81 Score=26.79 Aligned_cols=90 Identities=11% Similarity=0.077 Sum_probs=59.4
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCCCCCCH---HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHH-cCCceEEeCCC
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLMPCLSG---IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLS-KGAVYFLVKPI 83 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~mp~~~g---~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~-~Ga~~~l~KP~ 83 (162)
=.++-++.+.+ .+||+||+-=--.+.+. +...+.|.... ..+|||+-....-.+.+.+.|. .|.+=|+...+
T Consensus 112 l~~~~l~~i~~--~~PDiILLaGGtDgG~~~~il~nA~~La~~~--~~~pVIyAGN~~a~~~v~~il~~~~~~~~~~~NV 187 (457)
T PF13941_consen 112 LTEEDLEEIRE--IRPDIILLAGGTDGGNKEVILHNAEMLAEAN--LRIPVIYAGNKAAQDEVEEILEKAGKEVVITENV 187 (457)
T ss_pred CCHHHHHHHhc--cCCCEEEEeCCccCCchHHHHHHHHHHHhCC--CCCcEEEECCHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 34556777887 89999999533223222 34556666554 6789888877777788888888 67777776633
Q ss_pred -------CHHHHHHHHHHHHHhccC
Q 044790 84 -------RKNELQNLWQHVWRKCHS 101 (162)
Q Consensus 84 -------~~~~L~~~i~~~l~~~~~ 101 (162)
+.+-.+..|+.+..+.-.
T Consensus 188 ~P~i~~ln~~paR~~I~~~F~~~Ii 212 (457)
T PF13941_consen 188 MPKIDVLNVEPAREAIREVFLRHII 212 (457)
T ss_pred CCCCCCcChHHHHHHHHHHHHHHHh
Confidence 455667777766555433
No 275
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=66.44 E-value=27 Score=25.45 Aligned_cols=68 Identities=18% Similarity=0.237 Sum_probs=41.2
Q ss_pred HHHHHHHHhhCCCccEEEEcCCCCCCCH-------HHHHHHHHccC--CCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 10 LQAWKILEDLMDQIDLVLTEVLMPCLSG-------IGLLRKIMNHK--TCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 10 ~eal~~l~~~~~~~DlvllD~~mp~~~g-------~~~~~~ir~~~--~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
.+.++.+.. .+|.++++...|+.+| ++.++++++.. ..+.+|+++.-+- ..+.+.++.+.|++.++.
T Consensus 118 ~~~~~~~~~---~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~GGI-~~env~~~~~~gad~iiv 193 (211)
T cd00429 118 VEVLEPYLD---EVDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGGI-NLETIPLLAEAGADVLVA 193 (211)
T ss_pred HHHHHHHHh---hCCEEEEEEECCCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEECCC-CHHHHHHHHHcCCCEEEE
Confidence 444444443 3788887765565444 33445554321 0124787665544 468889999999999875
Q ss_pred C
Q 044790 81 K 81 (162)
Q Consensus 81 K 81 (162)
-
T Consensus 194 g 194 (211)
T cd00429 194 G 194 (211)
T ss_pred C
Confidence 4
No 276
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=66.20 E-value=61 Score=25.29 Aligned_cols=66 Identities=15% Similarity=0.124 Sum_probs=46.5
Q ss_pred EEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEE
Q 044790 4 IAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFL 79 (162)
Q Consensus 4 ~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l 79 (162)
+.+++.+++.+.+.. .+|.|.+|-.- .+.++++.+... ..+|++++. .-..+.+....+.|++.+-
T Consensus 187 vev~s~eea~~A~~~---gaDyI~ld~~~-----~e~l~~~~~~~~-~~ipi~AiG-GI~~~ni~~~a~~Gvd~Ia 252 (268)
T cd01572 187 VEVETLEQLKEALEA---GADIIMLDNMS-----PEELREAVALLK-GRVLLEASG-GITLENIRAYAETGVDYIS 252 (268)
T ss_pred EEECCHHHHHHHHHc---CCCEEEECCcC-----HHHHHHHHHHcC-CCCcEEEEC-CCCHHHHHHHHHcCCCEEE
Confidence 578899999888754 78999999542 455666554321 257766554 4578888899999999873
No 277
>PRK08999 hypothetical protein; Provisional
Probab=65.92 E-value=63 Score=25.35 Aligned_cols=68 Identities=10% Similarity=0.092 Sum_probs=49.3
Q ss_pred EEcCHHHHHHHHHhhCCCccEEEEcCCCC-------CCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCce
Q 044790 5 AVENGLQAWKILEDLMDQIDLVLTEVLMP-------CLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVY 77 (162)
Q Consensus 5 ~a~~~~eal~~l~~~~~~~DlvllD~~mp-------~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~ 77 (162)
.+++..++.+.. + ..+|.|++.-.-+ ..-|++.++++++. ..+||+.+.+- ..+.+.++++.|+++
T Consensus 232 S~h~~~~~~~a~-~--~~~dyi~~gpvf~t~tk~~~~~~g~~~~~~~~~~---~~~Pv~AiGGI-~~~~~~~~~~~g~~g 304 (312)
T PRK08999 232 SCHDAEELARAQ-R--LGVDFAVLSPVQPTASHPGAAPLGWEGFAALIAG---VPLPVYALGGL-GPGDLEEAREHGAQG 304 (312)
T ss_pred ecCCHHHHHHHH-h--cCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHh---CCCCEEEECCC-CHHHHHHHHHhCCCE
Confidence 567777765544 3 4689998876432 12467888888764 47999999976 677788899999998
Q ss_pred EE
Q 044790 78 FL 79 (162)
Q Consensus 78 ~l 79 (162)
+-
T Consensus 305 va 306 (312)
T PRK08999 305 IA 306 (312)
T ss_pred EE
Confidence 73
No 278
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=65.89 E-value=15 Score=27.87 Aligned_cols=75 Identities=17% Similarity=0.238 Sum_probs=45.2
Q ss_pred CccEEE-EcCCCCCCCHHHH----HHHHHccCCC-CCCcEEEEecCCCHHHHHHHHHcCCceE-----EeCCCCHHHHHH
Q 044790 22 QIDLVL-TEVLMPCLSGIGL----LRKIMNHKTC-KNIPVIMMSSHDSMSIVFKCLSKGAVYF-----LVKPIRKNELQN 90 (162)
Q Consensus 22 ~~Dlvl-lD~~mp~~~g~~~----~~~ir~~~~~-~~~piI~lt~~~~~~~~~~a~~~Ga~~~-----l~KP~~~~~L~~ 90 (162)
..|.|+ |.++ |+.+|..+ +.+|++.... +. -.|.+.+.-..+.+..+.++|++-+ |.+.-++.+-..
T Consensus 138 ~vD~Vl~m~v~-pG~~gq~~~~~~~~ki~~~~~~~~~-~~I~VdGGI~~~ti~~~~~aGad~iVvGsaI~~a~d~~~~~~ 215 (228)
T PTZ00170 138 LVDMVLVMTVE-PGFGGQSFMHDMMPKVRELRKRYPH-LNIQVDGGINLETIDIAADAGANVIVAGSSIFKAKDRKQAIE 215 (228)
T ss_pred hhhhHHhhhcc-cCCCCcEecHHHHHHHHHHHHhccc-CeEEECCCCCHHHHHHHHHcCCCEEEEchHHhCCCCHHHHHH
Confidence 467554 3443 77666543 3344332111 23 3466777778888999999999965 445446666666
Q ss_pred HHHHHHHh
Q 044790 91 LWQHVWRK 98 (162)
Q Consensus 91 ~i~~~l~~ 98 (162)
.|+..+..
T Consensus 216 ~i~~~~~~ 223 (228)
T PTZ00170 216 LLRESVQK 223 (228)
T ss_pred HHHHHHHH
Confidence 66665544
No 279
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=65.65 E-value=27 Score=28.11 Aligned_cols=55 Identities=13% Similarity=0.175 Sum_probs=39.5
Q ss_pred HHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeC----------CCCHHHHHHHHHHH
Q 044790 37 GIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVK----------PIRKNELQNLWQHV 95 (162)
Q Consensus 37 g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~K----------P~~~~~L~~~i~~~ 95 (162)
.|+-+++||+. ..+|||+=.- -..+++..|.+.|+.+.|.- |-+.+.|-+.+..+
T Consensus 211 ~W~Di~wLr~~---T~LPIvvKGi-lt~eDA~~Ave~G~~GIIVSNHGgRQlD~vpAtI~~L~Evv~aV 275 (363)
T KOG0538|consen 211 SWKDIKWLRSI---TKLPIVVKGV-LTGEDARKAVEAGVAGIIVSNHGGRQLDYVPATIEALPEVVKAV 275 (363)
T ss_pred ChhhhHHHHhc---CcCCeEEEee-cccHHHHHHHHhCCceEEEeCCCccccCcccchHHHHHHHHHHh
Confidence 36778899876 4788886443 34567889999999999986 55556666666554
No 280
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=65.61 E-value=60 Score=26.56 Aligned_cols=72 Identities=17% Similarity=0.236 Sum_probs=45.8
Q ss_pred CccEEEEcCCCCCCCHHH-HHHHHHccCCCCCCcEEEEe-cCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHHH
Q 044790 22 QIDLVLTEVLMPCLSGIG-LLRKIMNHKTCKNIPVIMMS-SHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVWR 97 (162)
Q Consensus 22 ~~DlvllD~~mp~~~g~~-~~~~ir~~~~~~~~piI~lt-~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 97 (162)
..+.+|++..-+..=-+| ++..+.. ....|+... ...+.......++.|+++.+.+|-++.++......+-.
T Consensus 96 ~~~~~iv~~~Dw~iIPlEnliA~~~~----~~~~i~a~v~~~~eA~~~~~~LE~G~dGVll~~~d~~ei~~~~~~~~~ 169 (354)
T PF01959_consen 96 RADYVIVEFRDWTIIPLENLIAALQG----SSTKIIAVVADAEEARVALEVLEKGVDGVLLDPDDPAEIKALVALLKE 169 (354)
T ss_pred cCCeEEEEcCCCcEecHHHHHHHhcC----CCceEEEEeCCHHHHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHhh
Confidence 367777665544433333 3344433 234444444 33455666778889999999999999999887766544
No 281
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=65.57 E-value=85 Score=26.70 Aligned_cols=71 Identities=17% Similarity=0.129 Sum_probs=45.2
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCC--CHHHHHHHHHHHHHh
Q 044790 21 DQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPI--RKNELQNLWQHVWRK 98 (162)
Q Consensus 21 ~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~--~~~~L~~~i~~~l~~ 98 (162)
-..++||+-. .+| ...+.|.+.. |.+||+++|.. ..-...-++..|+.-++.++. +.+++.......+..
T Consensus 372 ~~akaIVv~T----~SG-~TA~~vSr~r--p~~PIiAvT~~-~~v~R~L~L~wGV~Pil~~~~~~~~~~~i~~a~~~l~~ 443 (473)
T TIGR01064 372 LDAKAIVVLT----ESG-RTARLLSKYR--PNAPIIAVTPN-ERVARQLALYWGVFPFLVDEEPSDTEARVNKALELLKE 443 (473)
T ss_pred cCCCEEEEEc----CCh-HHHHHHHhhC--CCCCEEEEcCC-HHHHHHhhccCCcEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 4456677653 344 4445554444 78999999974 344455567789999998863 556666655555554
Q ss_pred c
Q 044790 99 C 99 (162)
Q Consensus 99 ~ 99 (162)
.
T Consensus 444 ~ 444 (473)
T TIGR01064 444 K 444 (473)
T ss_pred c
Confidence 3
No 282
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=65.41 E-value=26 Score=25.05 Aligned_cols=76 Identities=18% Similarity=0.111 Sum_probs=40.6
Q ss_pred HHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe--CCCCHHHHHHH
Q 044790 14 KILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV--KPIRKNELQNL 91 (162)
Q Consensus 14 ~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~--KP~~~~~L~~~ 91 (162)
|.+.. .+|||||..-.... -++.+.+.+ ..+|++.+............+.. .-..+- |+-..+++...
T Consensus 63 E~ll~--l~PDlii~~~~~~~---~~~~~~l~~----~gIpvv~i~~~~~~~~~~~~i~~-~g~~~g~~~~~~a~~~i~~ 132 (186)
T cd01141 63 ELIVA--LKPDLVILYGGFQA---QTILDKLEQ----LGIPVLYVNEYPSPLGRAEWIKF-AAAFYGVGKEDKADEAFAQ 132 (186)
T ss_pred HHHhc--cCCCEEEEecCCCc---hhHHHHHHH----cCCCEEEeCCCCChhhHHHHHHH-HHHHcCCchHHHHHHHHHH
Confidence 44555 68999998533211 146677765 46899888643222222222211 112232 55566677777
Q ss_pred HHHHHHhc
Q 044790 92 WQHVWRKC 99 (162)
Q Consensus 92 i~~~l~~~ 99 (162)
+++.+...
T Consensus 133 ~~~~~~~i 140 (186)
T cd01141 133 IAGRYRDL 140 (186)
T ss_pred HHHHHHHH
Confidence 76665543
No 283
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=65.33 E-value=41 Score=29.77 Aligned_cols=87 Identities=14% Similarity=0.154 Sum_probs=58.7
Q ss_pred EcCHHHHHHHHHhhCCCccEEEEcCCCC-----CCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCc----
Q 044790 6 VENGLQAWKILEDLMDQIDLVLTEVLMP-----CLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAV---- 76 (162)
Q Consensus 6 a~~~~eal~~l~~~~~~~DlvllD~~mp-----~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~---- 76 (162)
+.++-..+..+.. -++|.|-+|-.+- +.....+++.|.......++.+| ...-+..+....+.+.|++
T Consensus 699 fg~~~~~~~~l~~--l~~d~iKid~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vi-a~gVe~~~~~~~l~~~g~~~~QG 775 (799)
T PRK11359 699 FGTGFSGLSRLVS--LPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTVV-AEGVETKEQFEMLRKIHCRVIQG 775 (799)
T ss_pred CCCchhhHHHHhh--CCCCEEEECHHHHhhcccChhHHHHHHHHHHHHHHCCCeEE-EEcCCCHHHHHHHHhcCCCEEee
Confidence 4566667777777 7899999887431 12234455555432211345544 6677788888888899997
Q ss_pred eEEeCCCCHHHHHHHHHHH
Q 044790 77 YFLVKPIRKNELQNLWQHV 95 (162)
Q Consensus 77 ~~l~KP~~~~~L~~~i~~~ 95 (162)
.|+.||...++|...|+..
T Consensus 776 ~~~~~p~~~~~~~~~~~~~ 794 (799)
T PRK11359 776 YFFSRPLPAEEIPGWMSSV 794 (799)
T ss_pred CeecCCCCHHHHHHHHHhc
Confidence 3588999999999977653
No 284
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=65.33 E-value=47 Score=23.67 Aligned_cols=74 Identities=11% Similarity=0.082 Sum_probs=41.8
Q ss_pred HHHHHhhCCCccEEEEcCCC--------CCCCH-HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHH-HHcCCceEE--e
Q 044790 13 WKILEDLMDQIDLVLTEVLM--------PCLSG-IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKC-LSKGAVYFL--V 80 (162)
Q Consensus 13 l~~l~~~~~~~DlvllD~~m--------p~~~g-~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a-~~~Ga~~~l--~ 80 (162)
.+++.+ ..+.+|++|+.- .-..| .++++.++. ...+++++|........... -..|...+. .
T Consensus 17 ~~~~~~--~~v~~vv~D~Dgtl~~~~~~~~~pgv~e~L~~Lk~----~g~~l~I~Sn~~~~~~~~~~~~~~gl~~~~~~~ 90 (170)
T TIGR01668 17 IDLLKK--VGIKGVVLDKDNTLVYPDHNEAYPALRDWIEELKA----AGRKLLIVSNNAGEQRAKAVEKALGIPVLPHAV 90 (170)
T ss_pred HHHHHH--CCCCEEEEecCCccccCCCCCcChhHHHHHHHHHH----cCCEEEEEeCCchHHHHHHHHHHcCCEEEcCCC
Confidence 345666 789999998731 11222 456777765 35788989886522333332 246665543 4
Q ss_pred CCCCHHHHHHHHH
Q 044790 81 KPIRKNELQNLWQ 93 (162)
Q Consensus 81 KP~~~~~L~~~i~ 93 (162)
||. ++-+...++
T Consensus 91 KP~-p~~~~~~l~ 102 (170)
T TIGR01668 91 KPP-GCAFRRAHP 102 (170)
T ss_pred CCC-hHHHHHHHH
Confidence 773 444444443
No 285
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=65.29 E-value=52 Score=26.09 Aligned_cols=55 Identities=15% Similarity=0.152 Sum_probs=40.5
Q ss_pred HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHH
Q 044790 38 IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHV 95 (162)
Q Consensus 38 ~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~ 95 (162)
.+.++.+|+.. +....|-+.. ...+.+.++++.|+|-+..-++++++|.+.+..+
T Consensus 183 ~~av~~~r~~~--~~~~~I~VEv-~tleea~eA~~~GaD~I~LDn~~~e~l~~av~~~ 237 (288)
T PRK07428 183 GEAITRIRQRI--PYPLTIEVET-ETLEQVQEALEYGADIIMLDNMPVDLMQQAVQLI 237 (288)
T ss_pred HHHHHHHHHhC--CCCCEEEEEC-CCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHH
Confidence 34566776643 3233444444 4677888999999999999999999999999754
No 286
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=65.29 E-value=56 Score=26.20 Aligned_cols=68 Identities=16% Similarity=0.250 Sum_probs=50.5
Q ss_pred EcCHHHHHHHHHhhCCCccEEEEcCC----------CCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHH----------
Q 044790 6 VENGLQAWKILEDLMDQIDLVLTEVL----------MPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMS---------- 65 (162)
Q Consensus 6 a~~~~eal~~l~~~~~~~DlvllD~~----------mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~---------- 65 (162)
.++.++|.+++++ ..+|.+=+-+- -|..+ |+.++.|++. ..+|+++=.+..-++
T Consensus 154 ~TdPeeA~~Fv~~--TgvD~LAvaiGt~HG~Yk~~~~p~L~-f~~L~~I~~~---~~iPLVLHGgSGip~e~~~~~~~~g 227 (307)
T PRK05835 154 LVNPKEAEQFVKE--SQVDYLAPAIGTSHGAFKFKGEPKLD-FERLQEVKRL---TNIPLVLHGASAIPDDVRKSYLDAG 227 (307)
T ss_pred CCCHHHHHHHHHh--hCCCEEEEccCccccccCCCCCCccC-HHHHHHHHHH---hCCCEEEeCCCCCchHHhhhhhhhc
Confidence 6789999999998 88998776662 12233 7889999775 378988877766554
Q ss_pred ------------HHHHHHHcCCceEE
Q 044790 66 ------------IVFKCLSKGAVYFL 79 (162)
Q Consensus 66 ------------~~~~a~~~Ga~~~l 79 (162)
.+.+|...|+.-+=
T Consensus 228 ~~~~~~~g~~~e~~~kai~~GI~KiN 253 (307)
T PRK05835 228 GDLKGSKGVPFEFLQESVKGGINKVN 253 (307)
T ss_pred cccccccCCCHHHHHHHHHcCceEEE
Confidence 67888888877663
No 287
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=65.24 E-value=29 Score=24.78 Aligned_cols=75 Identities=16% Similarity=0.170 Sum_probs=40.1
Q ss_pred HHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHH
Q 044790 13 WKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLW 92 (162)
Q Consensus 13 l~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i 92 (162)
+|.+.+ ..|||||....+. .+..+.+++ ..+|++++......+...+.+.. .-.++-|+-..+++...+
T Consensus 53 ~E~l~~--l~PDlii~~~~~~----~~~~~~l~~----~gi~v~~~~~~~~~~~~~~~~~~-lg~~~g~~~~a~~~~~~~ 121 (195)
T cd01143 53 VEKIVA--LKPDLVIVSSSSL----AELLEKLKD----AGIPVVVLPAASSLDEIYDQIEL-IGKITGAEEEAEKLVKEM 121 (195)
T ss_pred HHHHhc--cCCCEEEEcCCcC----HHHHHHHHH----cCCcEEEeCCCCCHHHHHHHHHH-HHHHhCChHHHHHHHHHH
Confidence 344555 6899999864332 235666665 35778777654333333332221 112334555566666666
Q ss_pred HHHHHh
Q 044790 93 QHVWRK 98 (162)
Q Consensus 93 ~~~l~~ 98 (162)
+..+..
T Consensus 122 ~~~~~~ 127 (195)
T cd01143 122 KQKIDK 127 (195)
T ss_pred HHHHHH
Confidence 655543
No 288
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=65.22 E-value=48 Score=25.75 Aligned_cols=71 Identities=20% Similarity=0.189 Sum_probs=40.9
Q ss_pred HHHHHHHHhhCCCccEEEEc-C----CCCCC--CHHHHHHHHHccCCCCCCcEEE-EecCCCH------HHHHHHHHcCC
Q 044790 10 LQAWKILEDLMDQIDLVLTE-V----LMPCL--SGIGLLRKIMNHKTCKNIPVIM-MSSHDSM------SIVFKCLSKGA 75 (162)
Q Consensus 10 ~eal~~l~~~~~~~DlvllD-~----~mp~~--~g~~~~~~ir~~~~~~~~piI~-lt~~~~~------~~~~~a~~~Ga 75 (162)
..|++.+... ...+++||. . ..+.. --+..+..+++. .++|||+ .| +... .....|..+||
T Consensus 139 ~~A~e~i~~~-Gn~~i~L~eRg~~~Y~~~~~n~~dl~ai~~lk~~---~~lPVivd~S-Hs~G~r~~v~~~a~AAvA~GA 213 (250)
T PRK13397 139 LGALSYLQDT-GKSNIILCERGVRGYDVETRNMLDIMAVPIIQQK---TDLPIIVDVS-HSTGRRDLLLPAAKIAKAVGA 213 (250)
T ss_pred HHHHHHHHHc-CCCeEEEEccccCCCCCccccccCHHHHHHHHHH---hCCCeEECCC-CCCcccchHHHHHHHHHHhCC
Confidence 5667777652 456899997 2 11111 112233444443 4689988 55 4432 56777888999
Q ss_pred ceE-EeCCCCH
Q 044790 76 VYF-LVKPIRK 85 (162)
Q Consensus 76 ~~~-l~KP~~~ 85 (162)
+++ |-|-+++
T Consensus 214 dGl~IE~H~~P 224 (250)
T PRK13397 214 NGIMMEVHPDP 224 (250)
T ss_pred CEEEEEecCCc
Confidence 976 4554443
No 289
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=65.17 E-value=35 Score=26.42 Aligned_cols=49 Identities=10% Similarity=0.164 Sum_probs=32.6
Q ss_pred CccEEEEcCC---------CCCCCHHHHHHHHHccCCCCCCcEEEEecCC---CHHHHHHHHHcCCc
Q 044790 22 QIDLVLTEVL---------MPCLSGIGLLRKIMNHKTCKNIPVIMMSSHD---SMSIVFKCLSKGAV 76 (162)
Q Consensus 22 ~~DlvllD~~---------mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~---~~~~~~~a~~~Ga~ 76 (162)
+++++++|+. .|+ ..+++++|+. ..++++++|.+. ......+....|+.
T Consensus 1 ~~~~~~~D~DGtl~~~~~~~~g--a~e~l~~L~~----~g~~~~~~Tnns~~~~~~~~~~l~~~G~~ 61 (279)
T TIGR01452 1 RAQGFIFDCDGVLWLGERVVPG--APELLDRLAR----AGKAALFVTNNSTKSRAEYALKFARLGFN 61 (279)
T ss_pred CccEEEEeCCCceEcCCeeCcC--HHHHHHHHHH----CCCeEEEEeCCCCCCHHHHHHHHHHcCCC
Confidence 3678888874 233 5788888876 468999999854 23334445556764
No 290
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=64.85 E-value=45 Score=25.27 Aligned_cols=87 Identities=9% Similarity=0.014 Sum_probs=58.7
Q ss_pred EcCHHHHHHHHHhhCCCc-cEEEEcCCC--CCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCC
Q 044790 6 VENGLQAWKILEDLMDQI-DLVLTEVLM--PCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKP 82 (162)
Q Consensus 6 a~~~~eal~~l~~~~~~~-DlvllD~~m--p~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP 82 (162)
..++.+..+.+.+ ..+ .+.|+|+.- ....-+++++.|.+. ..+|+.+=..-...+.+.+++..|++-.+.-.
T Consensus 34 ~~dp~~~a~~~~~--~g~~~l~i~DLd~~~~~~~n~~~i~~i~~~---~~~~v~vgGGir~~edv~~~l~~Ga~~viigt 108 (233)
T cd04723 34 TSDPLDVARAYKE--LGFRGLYIADLDAIMGRGDNDEAIRELAAA---WPLGLWVDGGIRSLENAQEWLKRGASRVIVGT 108 (233)
T ss_pred CCCHHHHHHHHHH--CCCCEEEEEeCccccCCCccHHHHHHHHHh---CCCCEEEecCcCCHHHHHHHHHcCCCeEEEcc
Confidence 3467777777776 444 467778753 223336677777653 36899888888889999999999999988766
Q ss_pred CCHHHHHHHHHHHHHhc
Q 044790 83 IRKNELQNLWQHVWRKC 99 (162)
Q Consensus 83 ~~~~~L~~~i~~~l~~~ 99 (162)
..... ..+..++.+.
T Consensus 109 ~~~~~--~~~~~~~~~~ 123 (233)
T cd04723 109 ETLPS--DDDEDRLAAL 123 (233)
T ss_pred eeccc--hHHHHHHHhc
Confidence 44443 3444444443
No 291
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=64.79 E-value=31 Score=22.73 Aligned_cols=50 Identities=16% Similarity=0.233 Sum_probs=33.4
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCCCCCC-HHHHHHHHHccCCCC-CCcEEEEecC
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLMPCLS-GIGLLRKIMNHKTCK-NIPVIMMSSH 61 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~mp~~~-g~~~~~~ir~~~~~~-~~piI~lt~~ 61 (162)
...+.++.+.+ .+||+|.+...+.... ..+.+..+++.. + +++|++=...
T Consensus 38 ~~~~~~~~i~~--~~pdiV~iS~~~~~~~~~~~~~~~~~~~~--p~~~~ivvGG~~ 89 (125)
T cd02065 38 PPEEIVEAAKE--EDADVVGLSALSTTHMEAMKLVIEALKEL--GIDIPVVVGGAH 89 (125)
T ss_pred CHHHHHHHHHH--cCCCEEEEecchHhHHHHHHHHHHHHHhc--CCCCeEEEeCCc
Confidence 55667777777 7899999998775533 355566666654 4 6766655433
No 292
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=64.40 E-value=46 Score=25.71 Aligned_cols=86 Identities=15% Similarity=0.093 Sum_probs=52.6
Q ss_pred EcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeC-C-C
Q 044790 6 VENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVK-P-I 83 (162)
Q Consensus 6 a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~K-P-~ 83 (162)
+.+.-+.-+.+.+. ..=.|||+||.-..-.--..++.+.+....-.+|+-+=..-...+.+.+.+.+|||..=.- + +
T Consensus 29 ~GDpVelA~~Y~e~-GADElvFlDItAs~~gr~~~~~vv~r~A~~vfiPltVGGGI~s~eD~~~ll~aGADKVSINsaAv 107 (256)
T COG0107 29 AGDPVELAKRYNEE-GADELVFLDITASSEGRETMLDVVERVAEQVFIPLTVGGGIRSVEDARKLLRAGADKVSINSAAV 107 (256)
T ss_pred cCChHHHHHHHHHc-CCCeEEEEecccccccchhHHHHHHHHHhhceeeeEecCCcCCHHHHHHHHHcCCCeeeeChhHh
Confidence 34555666666651 3346999999765433233344444433335677777667778999999999999987332 2 3
Q ss_pred CHHHHHHHH
Q 044790 84 RKNELQNLW 92 (162)
Q Consensus 84 ~~~~L~~~i 92 (162)
...+|+..+
T Consensus 108 ~~p~lI~~~ 116 (256)
T COG0107 108 KDPELITEA 116 (256)
T ss_pred cChHHHHHH
Confidence 334444444
No 293
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=64.27 E-value=63 Score=25.53 Aligned_cols=68 Identities=22% Similarity=0.299 Sum_probs=51.1
Q ss_pred EcCHHHHHHHHHhhCCCccEEEEcCCC--------CCCCHHHHHHHHHccCCCCCCcEEEEecCC-CHHHHHHHHHcCCc
Q 044790 6 VENGLQAWKILEDLMDQIDLVLTEVLM--------PCLSGIGLLRKIMNHKTCKNIPVIMMSSHD-SMSIVFKCLSKGAV 76 (162)
Q Consensus 6 a~~~~eal~~l~~~~~~~DlvllD~~m--------p~~~g~~~~~~ir~~~~~~~~piI~lt~~~-~~~~~~~a~~~Ga~ 76 (162)
.++.++|.+++++ ..+|.+=+.+-- |..+ |++++.|++. ..+|+++=.+.. ..+.+.++.+.|+.
T Consensus 154 ~T~pe~a~~Fv~~--TgvD~LAvaiGt~HG~y~~~p~Ld-~~~L~~i~~~---~~vPLVlHGgSG~~~e~~~~ai~~Gi~ 227 (284)
T PRK12857 154 MTDPEEARRFVEE--TGVDALAIAIGTAHGPYKGEPKLD-FDRLAKIKEL---VNIPIVLHGSSGVPDEAIRKAISLGVR 227 (284)
T ss_pred cCCHHHHHHHHHH--HCCCEEeeccCccccccCCCCcCC-HHHHHHHHHH---hCCCEEEeCCCCCCHHHHHHHHHcCCe
Confidence 6789999999998 789988877722 4444 7889999875 368887766544 55667889999987
Q ss_pred eEE
Q 044790 77 YFL 79 (162)
Q Consensus 77 ~~l 79 (162)
.+=
T Consensus 228 KiN 230 (284)
T PRK12857 228 KVN 230 (284)
T ss_pred EEE
Confidence 663
No 294
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=64.26 E-value=70 Score=25.27 Aligned_cols=85 Identities=15% Similarity=0.179 Sum_probs=57.6
Q ss_pred EcCHHHHHHHHHhhCCCccEEEEcCCC--------CCCCHHHHHHHHHccCCCCCCcEEEEecCC-CHHHHHHHHHcCCc
Q 044790 6 VENGLQAWKILEDLMDQIDLVLTEVLM--------PCLSGIGLLRKIMNHKTCKNIPVIMMSSHD-SMSIVFKCLSKGAV 76 (162)
Q Consensus 6 a~~~~eal~~l~~~~~~~DlvllD~~m--------p~~~g~~~~~~ir~~~~~~~~piI~lt~~~-~~~~~~~a~~~Ga~ 76 (162)
.++.++|.+++++ ..+|.+=+.+-- |..+ |++++.|+.. -.+|+++=.+.. ..+...++.+.|+.
T Consensus 152 ~T~peea~~Fv~~--TgvD~LAvaiGt~HG~yk~~p~Ld-f~~L~~I~~~---~~iPLVlHGgSG~~~e~~~~ai~~Gi~ 225 (282)
T TIGR01858 152 YTDPQEAKEFVEA--TGVDSLAVAIGTAHGLYKKTPKLD-FDRLAEIREV---VDVPLVLHGASDVPDEDVRRTIELGIC 225 (282)
T ss_pred cCCHHHHHHHHHH--HCcCEEecccCccccCcCCCCccC-HHHHHHHHHH---hCCCeEEecCCCCCHHHHHHHHHcCCe
Confidence 6789999999998 889988877632 3333 7889999875 368887766544 56667889999987
Q ss_pred eEEeCCCCHHHHHHHHHHHH
Q 044790 77 YFLVKPIRKNELQNLWQHVW 96 (162)
Q Consensus 77 ~~l~KP~~~~~L~~~i~~~l 96 (162)
.+=.-..-.......++..+
T Consensus 226 KiNi~T~l~~a~~~~~~~~~ 245 (282)
T TIGR01858 226 KVNVATELKIAFSGAVKAYF 245 (282)
T ss_pred EEEeCcHHHHHHHHHHHHHH
Confidence 76333322333334444444
No 295
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=64.22 E-value=42 Score=26.02 Aligned_cols=72 Identities=11% Similarity=-0.105 Sum_probs=44.7
Q ss_pred EEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccC----CCCCCcEEEEecCCCHHHHHHHHHcCCceEE
Q 044790 5 AVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHK----TCKNIPVIMMSSHDSMSIVFKCLSKGAVYFL 79 (162)
Q Consensus 5 ~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~----~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l 79 (162)
.+++..++++.+.. ..+|.|.+|-.-|. .+-.....++... ..+...+|+++..-+.+.+......|++-|-
T Consensus 190 e~~~~~~~~~~~~~--~~~d~irlDs~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~Sggi~~~~i~~~~~~gvd~~g 265 (281)
T cd00516 190 EVDTLEEALEAAKA--GGADGIRLDSGSPE-ELDPAVLILKARAHLDGKGLPRVKIEASGGLDEENIRAYAETGVDVFG 265 (281)
T ss_pred EeCCHHHHHHHHhc--CCCCEEEeCCCChH-HHHHHHHHHHHHHhhhhcCCCceEEEEeCCCCHHHHHHHHHcCCCEEE
Confidence 45568888888876 45999999976442 2222222222210 0123346777777778888888888877663
No 296
>PF06073 DUF934: Bacterial protein of unknown function (DUF934); InterPro: IPR008318 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=64.11 E-value=42 Score=22.64 Aligned_cols=73 Identities=10% Similarity=0.030 Sum_probs=52.4
Q ss_pred CCccEEEEcCC-CCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCC-CCHHHHHHHHHHH
Q 044790 21 DQIDLVLTEVL-MPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKP-IRKNELQNLWQHV 95 (162)
Q Consensus 21 ~~~DlvllD~~-mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP-~~~~~L~~~i~~~ 95 (162)
...++|.++.- .-+.-|+...+.||+.. .-.--|--++..-.+...-....|++.|..+. .+.+.....+..+
T Consensus 18 ~~l~lI~i~FP~F~DGRgfS~ArlLR~r~--gy~GelRA~Gdvl~DQl~~l~R~GFdsf~l~~~~~~~~~~~~l~~f 92 (110)
T PF06073_consen 18 DRLPLIAIDFPKFTDGRGFSQARLLRERY--GYTGELRAVGDVLRDQLFYLRRCGFDSFELREDQDPEDALAALSDF 92 (110)
T ss_pred cCCCEEEEECCCcCCchHhHHHHHHHHHc--CCCCcEEEeccchHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHhhC
Confidence 34677776652 34567899999999654 34445667777888888888899999998775 6666666655543
No 297
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=64.07 E-value=58 Score=24.28 Aligned_cols=71 Identities=20% Similarity=0.230 Sum_probs=51.2
Q ss_pred cCHHHHHHHHHhhCCCcc-EEEEcCCC--CC-CCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCC
Q 044790 7 ENGLQAWKILEDLMDQID-LVLTEVLM--PC-LSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKP 82 (162)
Q Consensus 7 ~~~~eal~~l~~~~~~~D-lvllD~~m--p~-~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP 82 (162)
.+..+..+.+.+ ..+| +.++|+.- .+ ..-+++++.|++. ..+||++-..-.+.+.+.+++..|++..+.--
T Consensus 30 ~~~~~~a~~~~~--~g~~~i~v~dld~~~~g~~~~~~~i~~i~~~---~~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg~ 104 (233)
T PRK00748 30 DDPVAQAKAWED--QGAKWLHLVDLDGAKAGKPVNLELIEAIVKA---VDIPVQVGGGIRSLETVEALLDAGVSRVIIGT 104 (233)
T ss_pred CCHHHHHHHHHH--cCCCEEEEEeCCccccCCcccHHHHHHHHHH---CCCCEEEcCCcCCHHHHHHHHHcCCCEEEECc
Confidence 477777777777 5655 56667632 12 2336778888764 46899988888889999999999999887554
No 298
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=64.02 E-value=28 Score=31.61 Aligned_cols=74 Identities=7% Similarity=0.127 Sum_probs=50.2
Q ss_pred CccEEEEcC-CCCCCCHHHH-HHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 044790 22 QIDLVLTEV-LMPCLSGIGL-LRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVWRKC 99 (162)
Q Consensus 22 ~~DlvllD~-~mp~~~g~~~-~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~~ 99 (162)
++-|+|+|- +|-....+.. ++.|.+-+ .++.+|++|.. ...+...+..-|.-|-.|++..+++...|++++...
T Consensus 119 r~KVIIIDEah~LT~~A~NALLKtLEEPP--~~v~FILaTtd--~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~E 194 (830)
T PRK07003 119 RFKVYMIDEVHMLTNHAFNAMLKTLEEPP--PHVKFILATTD--PQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEE 194 (830)
T ss_pred CceEEEEeChhhCCHHHHHHHHHHHHhcC--CCeEEEEEECC--hhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHc
Confidence 467888864 4433344443 44443322 46777777753 445566677778889999999999999999988764
No 299
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=63.33 E-value=4.2 Score=27.42 Aligned_cols=73 Identities=12% Similarity=0.117 Sum_probs=48.3
Q ss_pred HHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCC
Q 044790 9 GLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPI 83 (162)
Q Consensus 9 ~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~ 83 (162)
+...+..+.+ ..++++.++-.--...|......|...+...++-+|++.+..-.+.+.++...|+...+.-|-
T Consensus 16 g~~v~~~l~~--~G~~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~~~~~~~~~~v~~~~~~g~~~v~~~~g 88 (116)
T PF13380_consen 16 GYRVLRNLKA--AGYEVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVCVPPDKVPEIVDEAAALGVKAVWLQPG 88 (116)
T ss_dssp HHHHHHHHHH--TT-EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-S-HHHHHHHHHHHHHHT-SEEEE-TT
T ss_pred HHHHHHHHHh--CCCEEEEECCCceEECcEEeeccccCCCCCCCEEEEEcCHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 5567777777 678999998877777787777777654333455555555556777888888999999988874
No 300
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=63.28 E-value=62 Score=24.35 Aligned_cols=67 Identities=15% Similarity=0.130 Sum_probs=45.1
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHHHh
Q 044790 23 IDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVWRK 98 (162)
Q Consensus 23 ~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 98 (162)
.|++|+-.... .-|..+++.+. ..+|||+........ .....+..+++.++.+.+++...|..++..
T Consensus 253 ad~~i~ps~~e-~~~~~~~Ea~a-----~G~Pvi~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~i~~ll~~ 319 (348)
T cd03820 253 ASIFVLTSRFE-GFPMVLLEAMA-----FGLPVISFDCPTGPS---EIIEDGVNGLLVPNGDVEALAEALLRLMED 319 (348)
T ss_pred CCEEEeCcccc-ccCHHHHHHHH-----cCCCEEEecCCCchH---hhhccCcceEEeCCCCHHHHHHHHHHHHcC
Confidence 57777665443 23566777764 478887543322222 334556789999999999999999998653
No 301
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=63.16 E-value=61 Score=27.05 Aligned_cols=73 Identities=14% Similarity=0.078 Sum_probs=47.7
Q ss_pred EEcCHHHHHHHHHhhCCCccEEEEcCCCC---------C--CCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHc
Q 044790 5 AVENGLQAWKILEDLMDQIDLVLTEVLMP---------C--LSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSK 73 (162)
Q Consensus 5 ~a~~~~eal~~l~~~~~~~DlvllD~~mp---------~--~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~ 73 (162)
-+.+.++|..+++. .+|.|...+.-. + ..-+..+..++.......+|||+=..-.....+.+|+.+
T Consensus 201 ~V~T~e~a~~l~~a---GaD~I~vG~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~~vpVIAdGGI~~~~Di~KALal 277 (404)
T PRK06843 201 NIVTKEAALDLISV---GADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEVCKNTNICIIADGGIRFSGDVVKAIAA 277 (404)
T ss_pred ecCCHHHHHHHHHc---CCCEEEECCCCCcCCcceeecCCCCChHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHc
Confidence 35677788777664 688887654221 1 112333333333211146899988888899999999999
Q ss_pred CCceEEe
Q 044790 74 GAVYFLV 80 (162)
Q Consensus 74 Ga~~~l~ 80 (162)
||+..+.
T Consensus 278 GA~aVmv 284 (404)
T PRK06843 278 GADSVMI 284 (404)
T ss_pred CCCEEEE
Confidence 9998864
No 302
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=63.10 E-value=64 Score=25.52 Aligned_cols=85 Identities=18% Similarity=0.193 Sum_probs=57.6
Q ss_pred EcCHHHHHHHHHhhCCCccEEEEcCC--------CCCCCHHHHHHHHHccCCCCCCcEEEEecCC-CHHHHHHHHHcCCc
Q 044790 6 VENGLQAWKILEDLMDQIDLVLTEVL--------MPCLSGIGLLRKIMNHKTCKNIPVIMMSSHD-SMSIVFKCLSKGAV 76 (162)
Q Consensus 6 a~~~~eal~~l~~~~~~~DlvllD~~--------mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~-~~~~~~~a~~~Ga~ 76 (162)
.++.++|.+++++ ..+|.+=+.+- -|..+ |++++.|++. ..+|+++=.+.. ..+.+.+|.+.|+.
T Consensus 154 ~T~peea~~Fv~~--TgvD~LAvaiGt~HG~y~~~p~Ld-~~~L~~I~~~---~~vPLVLHGgSG~~~e~~~~ai~~Gi~ 227 (284)
T PRK09195 154 YTDPAQAREFVEA--TGIDSLAVAIGTAHGMYKGEPKLD-FDRLENIRQW---VNIPLVLHGASGLPTKDIQQTIKLGIC 227 (284)
T ss_pred CCCHHHHHHHHHH--HCcCEEeeccCccccccCCCCcCC-HHHHHHHHHH---hCCCeEEecCCCCCHHHHHHHHHcCCe
Confidence 6799999999998 88998887762 24444 7889999875 378887766544 55667889999987
Q ss_pred eEEeCCCCHHHHHHHHHHHH
Q 044790 77 YFLVKPIRKNELQNLWQHVW 96 (162)
Q Consensus 77 ~~l~KP~~~~~L~~~i~~~l 96 (162)
.+=.-..-.......++..+
T Consensus 228 KiNi~T~l~~a~~~~~~~~~ 247 (284)
T PRK09195 228 KVNVATELKIAFSQALKNYL 247 (284)
T ss_pred EEEeCcHHHHHHHHHHHHHH
Confidence 66332222233344444444
No 303
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=63.05 E-value=38 Score=22.04 Aligned_cols=55 Identities=11% Similarity=-0.042 Sum_probs=33.4
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 21 DQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 21 ~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
...+.+|+...-. ..-+.++..+|+.. +..+|++... +.........+|++..+.
T Consensus 61 ~~a~~vv~~~~~d-~~n~~~~~~~r~~~--~~~~ii~~~~--~~~~~~~l~~~g~d~vi~ 115 (116)
T PF02254_consen 61 EKADAVVILTDDD-EENLLIALLARELN--PDIRIIARVN--DPENAELLRQAGADHVIS 115 (116)
T ss_dssp GCESEEEEESSSH-HHHHHHHHHHHHHT--TTSEEEEEES--SHHHHHHHHHTT-SEEEE
T ss_pred cccCEEEEccCCH-HHHHHHHHHHHHHC--CCCeEEEEEC--CHHHHHHHHHCCcCEEEC
Confidence 3566666665422 23355667777655 6677776664 455566667788887764
No 304
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=62.89 E-value=52 Score=25.54 Aligned_cols=74 Identities=18% Similarity=0.137 Sum_probs=47.6
Q ss_pred EEEEcCHHHHHHHHHhhCCCccEEEEcCC-CCCC-CHHHHHHHHHc-cCCCCCCcEEEEecCCCHHHHHHHHHcCCceEE
Q 044790 3 VIAVENGLQAWKILEDLMDQIDLVLTEVL-MPCL-SGIGLLRKIMN-HKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFL 79 (162)
Q Consensus 3 v~~a~~~~eal~~l~~~~~~~DlvllD~~-mp~~-~g~~~~~~ir~-~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l 79 (162)
++.+++..|+...+.. ..++|=++-. +..+ -.++....|.. .+ ..+.+|.-++-...+.+......|++++|
T Consensus 162 lVEVh~~~El~~al~~---~a~iiGINnRdL~tf~vd~~~~~~l~~~ip--~~~~~iseSGI~~~~d~~~l~~~G~davL 236 (254)
T PF00218_consen 162 LVEVHNEEELERALEA---GADIIGINNRDLKTFEVDLNRTEELAPLIP--KDVIVISESGIKTPEDARRLARAGADAVL 236 (254)
T ss_dssp EEEESSHHHHHHHHHT---T-SEEEEESBCTTTCCBHTHHHHHHHCHSH--TTSEEEEESS-SSHHHHHHHCTTT-SEEE
T ss_pred EEEECCHHHHHHHHHc---CCCEEEEeCccccCcccChHHHHHHHhhCc--cceeEEeecCCCCHHHHHHHHHCCCCEEE
Confidence 5688999998777654 6777766543 2221 12344444443 33 45667777788889999999999999998
Q ss_pred eC
Q 044790 80 VK 81 (162)
Q Consensus 80 ~K 81 (162)
.-
T Consensus 237 VG 238 (254)
T PF00218_consen 237 VG 238 (254)
T ss_dssp ES
T ss_pred EC
Confidence 64
No 305
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=62.86 E-value=70 Score=26.63 Aligned_cols=74 Identities=12% Similarity=0.123 Sum_probs=47.1
Q ss_pred HHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHc---CCceEEeCCCCHH
Q 044790 10 LQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSK---GAVYFLVKPIRKN 86 (162)
Q Consensus 10 ~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~---Ga~~~l~KP~~~~ 86 (162)
++..+++.. .|++++=.. ...-|+.+++.+. ..+|||....... .+.+.. |-.+++..|-+.+
T Consensus 323 ~ev~~~~~~----aDv~V~pS~-~E~~g~~vlEAmA-----~G~PVI~s~~gg~----~eiv~~~~~~~~G~lv~~~d~~ 388 (465)
T PLN02871 323 DELSQAYAS----GDVFVMPSE-SETLGFVVLEAMA-----SGVPVVAARAGGI----PDIIPPDQEGKTGFLYTPGDVD 388 (465)
T ss_pred HHHHHHHHH----CCEEEECCc-ccccCcHHHHHHH-----cCCCEEEcCCCCc----HhhhhcCCCCCceEEeCCCCHH
Confidence 444444443 466665332 2333555666664 4789985543322 233444 8899999999999
Q ss_pred HHHHHHHHHHH
Q 044790 87 ELQNLWQHVWR 97 (162)
Q Consensus 87 ~L~~~i~~~l~ 97 (162)
+|...|..++.
T Consensus 389 ~la~~i~~ll~ 399 (465)
T PLN02871 389 DCVEKLETLLA 399 (465)
T ss_pred HHHHHHHHHHh
Confidence 99999998875
No 306
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=62.70 E-value=66 Score=24.65 Aligned_cols=68 Identities=19% Similarity=0.145 Sum_probs=49.6
Q ss_pred CHHHHHHHHHhhCCC-ccEEEEcCCCCCC-CH--HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHc-----C-Cce
Q 044790 8 NGLQAWKILEDLMDQ-IDLVLTEVLMPCL-SG--IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSK-----G-AVY 77 (162)
Q Consensus 8 ~~~eal~~l~~~~~~-~DlvllD~~mp~~-~g--~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~-----G-a~~ 77 (162)
+..+.++.+.. .. -.+|++|+.--++ .| +++++.+++. ..+|||.-..-...+++.++... | +++
T Consensus 145 ~~~e~~~~~~~--~g~~~ii~tdI~rdGt~~G~d~el~~~l~~~---~~~pviasGGv~s~~Dl~~l~~~~~~~~g~v~g 219 (241)
T PRK14114 145 DPVSLLKRLKE--YGLEEIVHTEIEKDGTLQEHDFSLTRKIAIE---AEVKVFAAGGISSENSLKTAQRVHRETNGLLKG 219 (241)
T ss_pred CHHHHHHHHHh--cCCCEEEEEeechhhcCCCcCHHHHHHHHHH---CCCCEEEECCCCCHHHHHHHHhcccccCCcEEE
Confidence 34555666665 33 4788899976554 33 6778888765 47899999999999999888886 5 887
Q ss_pred EEe
Q 044790 78 FLV 80 (162)
Q Consensus 78 ~l~ 80 (162)
.|.
T Consensus 220 viv 222 (241)
T PRK14114 220 VIV 222 (241)
T ss_pred EEE
Confidence 754
No 307
>PRK13695 putative NTPase; Provisional
Probab=62.64 E-value=53 Score=23.30 Aligned_cols=74 Identities=14% Similarity=0.189 Sum_probs=42.0
Q ss_pred CCccEEEEcC--CCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHc--CCceEEeCCCCHHHHHHHHHHHH
Q 044790 21 DQIDLVLTEV--LMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSK--GAVYFLVKPIRKNELQNLWQHVW 96 (162)
Q Consensus 21 ~~~DlvllD~--~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~--Ga~~~l~KP~~~~~L~~~i~~~l 96 (162)
..++++|+|- .+...+ ..+.+.|..... ...|+|+++..........-+.. +..=|-..|-+.++|...|...+
T Consensus 95 ~~~~~lllDE~~~~e~~~-~~~~~~l~~~~~-~~~~~i~v~h~~~~~~~~~~i~~~~~~~i~~~~~~~r~~~~~~~~~~~ 172 (174)
T PRK13695 95 EEADVIIIDEIGKMELKS-PKFVKAVEEVLD-SEKPVIATLHRRSVHPFVQEIKSRPGGRVYELTPENRDSLPFEILNRL 172 (174)
T ss_pred CCCCEEEEECCCcchhhh-HHHHHHHHHHHh-CCCeEEEEECchhhHHHHHHHhccCCcEEEEEcchhhhhHHHHHHHHH
Confidence 3699999996 222222 333444443321 46788887765433222222322 33445567888888888887654
No 308
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=62.38 E-value=36 Score=25.67 Aligned_cols=53 Identities=19% Similarity=0.198 Sum_probs=34.8
Q ss_pred CCccEEEEcCC-------CCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHH--HHHHHcCCce
Q 044790 21 DQIDLVLTEVL-------MPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIV--FKCLSKGAVY 77 (162)
Q Consensus 21 ~~~DlvllD~~-------mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~--~~a~~~Ga~~ 77 (162)
..++++++|+. -|-....++++++++ ...++.++|........ ...-..|...
T Consensus 6 ~~~~~~~~D~dG~l~~~~~~~pga~e~L~~L~~----~G~~~~ivTN~~~~~~~~~~~L~~~gl~~ 67 (242)
T TIGR01459 6 NDYDVFLLDLWGVIIDGNHTYPGAVQNLNKIIA----QGKPVYFVSNSPRNIFSLHKTLKSLGINA 67 (242)
T ss_pred hcCCEEEEecccccccCCccCccHHHHHHHHHH----CCCEEEEEeCCCCChHHHHHHHHHCCCCc
Confidence 35899999983 233345778899986 46899999886543322 3344567654
No 309
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=62.34 E-value=52 Score=25.83 Aligned_cols=54 Identities=7% Similarity=0.085 Sum_probs=41.1
Q ss_pred HHHHHHHHccCCCCC-CcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHH
Q 044790 38 IGLLRKIMNHKTCKN-IPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHV 95 (162)
Q Consensus 38 ~~~~~~ir~~~~~~~-~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~ 95 (162)
.++++++|... +. .+|. ..-...+....++++|+|-.+.-.+++++|.+.++.+
T Consensus 169 ~~~v~~~k~~~--p~~~~I~--VEv~tleea~~A~~~GaDiI~LDn~~~e~l~~~v~~~ 223 (273)
T PRK05848 169 KEFIQHARKNI--PFTAKIE--IECESLEEAKNAMNAGADIVMCDNMSVEEIKEVVAYR 223 (273)
T ss_pred HHHHHHHHHhC--CCCceEE--EEeCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Confidence 45677777643 43 3333 3455888999999999999999999999999999853
No 310
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=62.06 E-value=49 Score=26.33 Aligned_cols=69 Identities=16% Similarity=0.205 Sum_probs=48.2
Q ss_pred ccEEEE-cCCCCCCCH-HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHH
Q 044790 23 IDLVLT-EVLMPCLSG-IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHV 95 (162)
Q Consensus 23 ~Dlvll-D~~mp~~~g-~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~ 95 (162)
.|.|++ |-++--..| -++++++|+.. +..+|. ..-...+.+.+++++|+|-.+.-.++++++.+.+..+
T Consensus 176 sD~vLIkdNHi~~~G~i~~av~~~r~~~--~~~kIe--VEvetleea~eA~~aGaDiImLDnmspe~l~~av~~~ 246 (294)
T PRK06978 176 YDGILIKENHIAAAGGVGAALDAAFALN--AGVPVQ--IEVETLAQLETALAHGAQSVLLDNFTLDMMREAVRVT 246 (294)
T ss_pred CceEEEeHHHHHHhCCHHHHHHHHHHhC--CCCcEE--EEcCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHhh
Confidence 466655 433332333 35678887654 344433 3335688899999999999999999999999998754
No 311
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=61.91 E-value=87 Score=25.57 Aligned_cols=70 Identities=16% Similarity=0.192 Sum_probs=51.2
Q ss_pred EEcCHHHHHHHHHhhCCCccEEEEcCCC----------CC---CCHHHHHHHHHccCCCCCCcEEEEecCCC--------
Q 044790 5 AVENGLQAWKILEDLMDQIDLVLTEVLM----------PC---LSGIGLLRKIMNHKTCKNIPVIMMSSHDS-------- 63 (162)
Q Consensus 5 ~a~~~~eal~~l~~~~~~~DlvllD~~m----------p~---~~g~~~~~~ir~~~~~~~~piI~lt~~~~-------- 63 (162)
..++.++|.+++++ ..+|.+=+.+-- |. .+ |+.++.|++.- +.+|+++=.+..-
T Consensus 171 ~~T~PeeA~~Fv~~--TgvD~LAvaiGt~HG~Yk~~~~p~~~~L~-~drl~eI~~~v--~~vPLVLHGgSGvp~~~~~~~ 245 (347)
T PRK13399 171 MLTDPDQAVDFVQR--TGVDALAIAIGTSHGAYKFTRKPDGDILA-IDRIEEIHARL--PNTHLVMHGSSSVPQELQEII 245 (347)
T ss_pred cCCCHHHHHHHHHH--HCcCEEhhhhccccCCcCCCCCCChhhcc-HHHHHHHHhhc--CCCCEEEeCCCCCCHHHHHHH
Confidence 36789999999998 789988766621 22 33 77888888753 4689887776653
Q ss_pred --------------HHHHHHHHHcCCceEE
Q 044790 64 --------------MSIVFKCLSKGAVYFL 79 (162)
Q Consensus 64 --------------~~~~~~a~~~Ga~~~l 79 (162)
.+.+.+|.+.|+.-+=
T Consensus 246 ~~~g~~~~~~~g~~~e~~~kai~~GI~KIN 275 (347)
T PRK13399 246 NAYGGKMKETYGVPVEEIQRGIKHGVRKVN 275 (347)
T ss_pred HHhcCCccccCCCCHHHHHHHHHCCCeEEE
Confidence 4678889999887663
No 312
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=61.51 E-value=20 Score=26.39 Aligned_cols=77 Identities=12% Similarity=0.122 Sum_probs=47.3
Q ss_pred EcCHHHHHHHHHhhCCCccEEEEcCCCCC-----CCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCc---e
Q 044790 6 VENGLQAWKILEDLMDQIDLVLTEVLMPC-----LSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAV---Y 77 (162)
Q Consensus 6 a~~~~eal~~l~~~~~~~DlvllD~~mp~-----~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~---~ 77 (162)
+..+..-+..+.. .+||.|-+|..+-. .....+++.+........+.| +...-+..+....+...|++ |
T Consensus 154 fg~~~~~~~~l~~--l~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v-ia~gVe~~~~~~~l~~~Gi~~~QG 230 (241)
T smart00052 154 FGTGYSSLSYLKR--LPVDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQKLGLQV-VAEGVETPEQLDLLRSLGCDYGQG 230 (241)
T ss_pred CCCcHHHHHHHHh--CCCCeEEECHHHHhhhccChhHHHHHHHHHHHHHHCCCeE-EEecCCCHHHHHHHHHcCCCEEee
Confidence 3345555667776 67899999864321 113345555544321134544 46677788888889999986 3
Q ss_pred -EEeCCCCH
Q 044790 78 -FLVKPIRK 85 (162)
Q Consensus 78 -~l~KP~~~ 85 (162)
|+.||...
T Consensus 231 ~~~~~p~~~ 239 (241)
T smart00052 231 YLFSRPLPL 239 (241)
T ss_pred ceeccCCCC
Confidence 46777654
No 313
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=61.48 E-value=69 Score=24.58 Aligned_cols=87 Identities=13% Similarity=0.180 Sum_probs=57.4
Q ss_pred EEcCHHHHHHHHHhhCCCccEEEEcCCC-----CCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCc---
Q 044790 5 AVENGLQAWKILEDLMDQIDLVLTEVLM-----PCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAV--- 76 (162)
Q Consensus 5 ~a~~~~eal~~l~~~~~~~DlvllD~~m-----p~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~--- 76 (162)
-+.+|-..+..+.+ .+||.|=+|-.+ .......+++.|-.......+.|| .-.-+..+......+.|++
T Consensus 156 DFGtG~ssl~~L~~--l~~d~iKID~~fi~~i~~~~~~~~iv~~iv~la~~l~~~vv-aEGVEt~~ql~~L~~~G~~~~Q 232 (256)
T COG2200 156 DFGTGYSSLSYLKR--LPPDILKIDRSFVRDLETDARDQAIVRAIVALAHKLGLTVV-AEGVETEEQLDLLRELGCDYLQ 232 (256)
T ss_pred CCCCCHHHHHHHhh--CCCCeEEECHHHHhhcccCcchHHHHHHHHHHHHHCCCEEE-EeecCCHHHHHHHHHcCCCeEe
Confidence 45677778888888 899999888743 223334566666443322345444 4445667777778889988
Q ss_pred -eEEeCCCCHHHHHHHHHH
Q 044790 77 -YFLVKPIRKNELQNLWQH 94 (162)
Q Consensus 77 -~~l~KP~~~~~L~~~i~~ 94 (162)
.|+.||...+++...+..
T Consensus 233 Gylf~~P~~~~~~~~~~~~ 251 (256)
T COG2200 233 GYLFSRPLPADALDALLSS 251 (256)
T ss_pred eccccCCCCHHHHHHHHhh
Confidence 348889998777776653
No 314
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=61.39 E-value=80 Score=24.98 Aligned_cols=85 Identities=14% Similarity=0.221 Sum_probs=58.3
Q ss_pred EcCHHHHHHHHHhhCCCccEEEEcCC--------CCCCCHHHHHHHHHccCCCCCCcEEEEecCC-CHHHHHHHHHcCCc
Q 044790 6 VENGLQAWKILEDLMDQIDLVLTEVL--------MPCLSGIGLLRKIMNHKTCKNIPVIMMSSHD-SMSIVFKCLSKGAV 76 (162)
Q Consensus 6 a~~~~eal~~l~~~~~~~DlvllD~~--------mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~-~~~~~~~a~~~Ga~ 76 (162)
.++.++|.+++++ ..+|.+-+.+- -|..+ |+.++.|+.. -.+|+++=.+.. ..+.+.++...|+.
T Consensus 155 yT~peeA~~Fv~~--TgvD~LAvaiGt~HG~Y~~~p~L~-~~~L~~I~~~---~~iPLVLHGgSG~~~e~~~~ai~~Gi~ 228 (285)
T PRK07709 155 YADPAECKHLVEA--TGIDCLAPALGSVHGPYKGEPNLG-FAEMEQVRDF---TGVPLVLHGGTGIPTADIEKAISLGTS 228 (285)
T ss_pred CCCHHHHHHHHHH--hCCCEEEEeecccccCcCCCCccC-HHHHHHHHHH---HCCCEEEeCCCCCCHHHHHHHHHcCCe
Confidence 5799999999999 88998887762 14333 6888999774 378987766655 45778889999987
Q ss_pred eEEeCCCCHHHHHHHHHHHH
Q 044790 77 YFLVKPIRKNELQNLWQHVW 96 (162)
Q Consensus 77 ~~l~KP~~~~~L~~~i~~~l 96 (162)
.+=.-..-.......++..+
T Consensus 229 KiNi~T~l~~a~~~~~~~~~ 248 (285)
T PRK07709 229 KINVNTENQIEFTKAVREVL 248 (285)
T ss_pred EEEeChHHHHHHHHHHHHHH
Confidence 76333322334444444444
No 315
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=61.38 E-value=47 Score=26.39 Aligned_cols=69 Identities=7% Similarity=0.084 Sum_probs=46.8
Q ss_pred ccEEEEcC-CCCCCCH-HHHHHHHHccCCCC-CCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHH
Q 044790 23 IDLVLTEV-LMPCLSG-IGLLRKIMNHKTCK-NIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHV 95 (162)
Q Consensus 23 ~DlvllD~-~mp~~~g-~~~~~~ir~~~~~~-~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~ 95 (162)
.|.|++-- +.--..+ .+.++.+|+.. + ..+|.+=. ...+.+.+++++|+|-.+.-.++++++.+.+..+
T Consensus 167 sD~iLIkdNHi~~~g~i~~av~~~r~~~--~~~~kIeVEv--~tleea~~a~~agaDiImLDnmspe~l~~av~~~ 238 (290)
T PRK06559 167 SDAIMLKDNHIAAVGSVQKAIAQARAYA--PFVKMVEVEV--ESLAAAEEAAAAGADIIMLDNMSLEQIEQAITLI 238 (290)
T ss_pred cceEEEcHHHHHhhccHHHHHHHHHHhC--CCCCeEEEEC--CCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Confidence 45555533 2222223 35567777654 3 34444333 5778899999999999999999999999999753
No 316
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=61.29 E-value=60 Score=26.56 Aligned_cols=69 Identities=14% Similarity=0.135 Sum_probs=39.7
Q ss_pred HHHHHHHHHhhCCCccEEEEc-CCC----CCC--CHHHHHHHHHccCCCCCCcEEEEecCCC------HHHHHHHHHcCC
Q 044790 9 GLQAWKILEDLMDQIDLVLTE-VLM----PCL--SGIGLLRKIMNHKTCKNIPVIMMSSHDS------MSIVFKCLSKGA 75 (162)
Q Consensus 9 ~~eal~~l~~~~~~~DlvllD-~~m----p~~--~g~~~~~~ir~~~~~~~~piI~lt~~~~------~~~~~~a~~~Ga 75 (162)
-..|++.+... ...+++||. ... +.. --+..+..+++. .++||++=+.+.. ......|..+||
T Consensus 241 ~~~Ave~i~~~-Gn~~i~L~erg~s~yp~~~~~~ldl~~i~~lk~~---~~~PV~~d~~Hs~G~r~~~~~~a~aAva~GA 316 (360)
T PRK12595 241 FIYAAEYIMSQ-GNGQIILCERGIRTYEKATRNTLDISAVPILKQE---THLPVMVDVTHSTGRRDLLLPTAKAALAIGA 316 (360)
T ss_pred HHHHHHHHHHC-CCCCEEEECCccCCCCCCCCCCcCHHHHHHHHHH---hCCCEEEeCCCCCcchhhHHHHHHHHHHcCC
Confidence 34667777652 456899996 322 111 124456666653 4689876244432 224456788999
Q ss_pred ceE-EeC
Q 044790 76 VYF-LVK 81 (162)
Q Consensus 76 ~~~-l~K 81 (162)
++. |-|
T Consensus 317 dg~~iE~ 323 (360)
T PRK12595 317 DGVMAEV 323 (360)
T ss_pred CeEEEEe
Confidence 955 555
No 317
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=61.23 E-value=67 Score=25.79 Aligned_cols=64 Identities=13% Similarity=0.142 Sum_probs=50.4
Q ss_pred HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCc------eEEeC-CCCHHHHHHHHHHHHHhccCC
Q 044790 38 IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAV------YFLVK-PIRKNELQNLWQHVWRKCHSS 102 (162)
Q Consensus 38 ~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~------~~l~K-P~~~~~L~~~i~~~l~~~~~~ 102 (162)
+++++.+++.. ...+|||-+..-...+++.+-+.+||+ .++.+ |.-..++.+-|.++++.....
T Consensus 228 l~~v~~l~~~~-~~~ipIIGvGGI~s~~DA~E~i~aGA~~vQv~Tal~~~Gp~i~~~I~~~l~~~l~~~g~~ 298 (310)
T COG0167 228 LRVVAELYKRL-GGDIPIIGVGGIETGEDALEFILAGASAVQVGTALIYKGPGIVKEIIKGLARWLEEKGFE 298 (310)
T ss_pred HHHHHHHHHhc-CCCCcEEEecCcCcHHHHHHHHHcCCchheeeeeeeeeCchHHHHHHHHHHHHHHHcCCC
Confidence 34566665542 147999999999999999999999987 66777 888889999999888876544
No 318
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=61.15 E-value=72 Score=24.34 Aligned_cols=72 Identities=13% Similarity=0.174 Sum_probs=52.6
Q ss_pred EcCHHHHHHHHHhhCCCc-cEEEEcCCCC---CCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeC
Q 044790 6 VENGLQAWKILEDLMDQI-DLVLTEVLMP---CLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVK 81 (162)
Q Consensus 6 a~~~~eal~~l~~~~~~~-DlvllD~~mp---~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~K 81 (162)
..+..+..+.+.. ..+ .+.|.|+.-- ...-+++++.+++. ..+||++-..-...+.+.+++..|++..+.-
T Consensus 29 ~~d~~~~a~~~~~--~G~~~i~i~dl~~~~~~~~~~~~~i~~i~~~---~~ipv~~~GGi~s~~~~~~~l~~Ga~~Viig 103 (253)
T PRK02083 29 AGDPVELAKRYNE--EGADELVFLDITASSEGRDTMLDVVERVAEQ---VFIPLTVGGGIRSVEDARRLLRAGADKVSIN 103 (253)
T ss_pred cCCHHHHHHHHHH--cCCCEEEEEeCCcccccCcchHHHHHHHHHh---CCCCEEeeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 3477777777766 444 4677788643 22336677888764 3689999999899999999999999988665
Q ss_pred C
Q 044790 82 P 82 (162)
Q Consensus 82 P 82 (162)
-
T Consensus 104 t 104 (253)
T PRK02083 104 S 104 (253)
T ss_pred h
Confidence 3
No 319
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=61.03 E-value=36 Score=25.92 Aligned_cols=77 Identities=17% Similarity=0.188 Sum_probs=51.4
Q ss_pred HHHHHHHHhhCCCcc-EEEEcCCCCCC---CHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHH---cCCceEEe--
Q 044790 10 LQAWKILEDLMDQID-LVLTEVLMPCL---SGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLS---KGAVYFLV-- 80 (162)
Q Consensus 10 ~eal~~l~~~~~~~D-lvllD~~mp~~---~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~---~Ga~~~l~-- 80 (162)
.+.++.+.+ ..++ +++.|+..-++ ..+++++.+++. ..+|||.-..-...+.+.++.+ .|+++.+.
T Consensus 149 ~~~~~~l~~--~G~~~iiv~~~~~~g~~~G~d~~~i~~i~~~---~~ipviasGGi~s~~D~~~l~~~~~~GvdgV~igr 223 (241)
T PRK14024 149 WEVLERLDS--AGCSRYVVTDVTKDGTLTGPNLELLREVCAR---TDAPVVASGGVSSLDDLRALAELVPLGVEGAIVGK 223 (241)
T ss_pred HHHHHHHHh--cCCCEEEEEeecCCCCccCCCHHHHHHHHhh---CCCCEEEeCCCCCHHHHHHHhhhccCCccEEEEeH
Confidence 455555555 4544 77778854321 237888888765 4789998888888888888764 49998754
Q ss_pred ----CCCCHHHHHHH
Q 044790 81 ----KPIRKNELQNL 91 (162)
Q Consensus 81 ----KP~~~~~L~~~ 91 (162)
.+++.+++...
T Consensus 224 a~~~g~~~~~~~~~~ 238 (241)
T PRK14024 224 ALYAGAFTLPEALAV 238 (241)
T ss_pred HHHcCCCCHHHHHHH
Confidence 35666665544
No 320
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=60.83 E-value=49 Score=26.70 Aligned_cols=62 Identities=16% Similarity=0.134 Sum_probs=42.9
Q ss_pred HHHHHHhhCCCccEEEEcCCC------CCCCH--HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceE
Q 044790 12 AWKILEDLMDQIDLVLTEVLM------PCLSG--IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYF 78 (162)
Q Consensus 12 al~~l~~~~~~~DlvllD~~m------p~~~g--~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~ 78 (162)
..+.+.+ ..+|+|-+.... +...| +++++.||+. ..+||+........+.+.++++.|.-|+
T Consensus 232 i~~~l~~--~gvD~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~---~~ipVi~~G~i~~~~~a~~~l~~g~~D~ 301 (337)
T PRK13523 232 YAKWMKE--QGVDLIDVSSGAVVPARIDVYPGYQVPFAEHIREH---ANIATGAVGLITSGAQAEEILQNNRADL 301 (337)
T ss_pred HHHHHHH--cCCCEEEeCCCCCCCCCCCCCccccHHHHHHHHhh---cCCcEEEeCCCCCHHHHHHHHHcCCCCh
Confidence 3344554 458988775533 11234 5678888875 4689998888888999999999885444
No 321
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=60.61 E-value=54 Score=25.85 Aligned_cols=55 Identities=15% Similarity=0.205 Sum_probs=41.7
Q ss_pred HHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHHH
Q 044790 39 GLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVWR 97 (162)
Q Consensus 39 ~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 97 (162)
+.++.+|... +..+|.+=. ...+.+.+++++|+|-.+.--++++++.+.+..+..
T Consensus 171 ~av~~~r~~~--~~~kIeVEv--~~leea~~a~~agaDiI~LDn~~~e~l~~~v~~l~~ 225 (278)
T PRK08385 171 EAIRRAKEFS--VYKVVEVEV--ESLEDALKAAKAGADIIMLDNMTPEEIREVIEALKR 225 (278)
T ss_pred HHHHHHHHhC--CCCcEEEEe--CCHHHHHHHHHcCcCEEEECCCCHHHHHHHHHHHHh
Confidence 3466677644 556644433 478889999999999998999999999999986543
No 322
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=60.39 E-value=87 Score=25.08 Aligned_cols=59 Identities=10% Similarity=0.036 Sum_probs=40.2
Q ss_pred HHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceE-EeC------CCCHHHHHHHHHHHHHhcc
Q 044790 39 GLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYF-LVK------PIRKNELQNLWQHVWRKCH 100 (162)
Q Consensus 39 ~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~-l~K------P~~~~~L~~~i~~~l~~~~ 100 (162)
+.+..+++. ..+|||....-...+++.+++.+||+.. +.. |--..++.+-|..++.+..
T Consensus 229 ~~v~~~~~~---~~ipIig~GGI~s~~Da~e~l~aGA~~V~v~t~~~~~g~~~~~~i~~~L~~~l~~~g 294 (334)
T PRK07565 229 RWIAILSGR---VGADLAATTGVHDAEDVIKMLLAGADVVMIASALLRHGPDYIGTILRGLEDWMERHG 294 (334)
T ss_pred HHHHHHHhh---cCCCEEEECCCCCHHHHHHHHHcCCCceeeehHHhhhCcHHHHHHHHHHHHHHHHcC
Confidence 344455442 3799999999999999999999999876 332 4333445556666555443
No 323
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=60.29 E-value=73 Score=26.79 Aligned_cols=66 Identities=15% Similarity=0.208 Sum_probs=43.8
Q ss_pred CCccEEEEcCCCCCC-CHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHH-cCCceEEeCCCCHHHHH
Q 044790 21 DQIDLVLTEVLMPCL-SGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLS-KGAVYFLVKPIRKNELQ 89 (162)
Q Consensus 21 ~~~DlvllD~~mp~~-~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~-~Ga~~~l~KP~~~~~L~ 89 (162)
..||+|.+-..-+.. ..+++++.+|+.. ++++||+-..+.... ..+++. ...-||+........|.
T Consensus 67 ~~~Dlv~is~~t~~~~~~~~ia~~iK~~~--p~~~vv~GG~h~t~~-pe~~l~~~~~vD~Vv~GEgE~~l~ 134 (472)
T TIGR03471 67 KDYDLVVLHTSTPSFPSDVKTAEALKEQN--PATKIGFVGAHVAVL-PEKTLKQGPAIDFVCRREFDYTIK 134 (472)
T ss_pred cCCCEEEEECCCcchHHHHHHHHHHHHhC--CCCEEEEECCCcccC-HHHHHhcCCCeeEEEeCchHHHHH
Confidence 468999998766654 4688889999876 788877666554332 234454 34567888865544443
No 324
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=60.27 E-value=84 Score=24.88 Aligned_cols=85 Identities=13% Similarity=0.153 Sum_probs=57.3
Q ss_pred EcCHHHHHHHHHhhCCCccEEEEcCC--------CCCCCHHHHHHHHHccCCCCCCcEEEEecCC-CHHHHHHHHHcCCc
Q 044790 6 VENGLQAWKILEDLMDQIDLVLTEVL--------MPCLSGIGLLRKIMNHKTCKNIPVIMMSSHD-SMSIVFKCLSKGAV 76 (162)
Q Consensus 6 a~~~~eal~~l~~~~~~~DlvllD~~--------mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~-~~~~~~~a~~~Ga~ 76 (162)
.++.++|.+++++ ..+|.+=+.+- -|..+ |+.++.|+.. -.+|+++=.+.. ..+.+.++...|+.
T Consensus 155 yT~peea~~Fv~~--TgvD~LAvaiGt~HG~Y~~~p~Ld-~~~L~~I~~~---~~vPLVLHGgSG~~~e~~~~ai~~GI~ 228 (286)
T PRK08610 155 YADPKECQELVEK--TGIDALAPALGSVHGPYKGEPKLG-FKEMEEIGLS---TGLPLVLHGGTGIPTKDIQKAIPFGTA 228 (286)
T ss_pred cCCHHHHHHHHHH--HCCCEEEeeccccccccCCCCCCC-HHHHHHHHHH---HCCCEEEeCCCCCCHHHHHHHHHCCCe
Confidence 5799999999998 88998887772 13333 7889999874 378987776655 44677889999977
Q ss_pred eEEeCCCCHHHHHHHHHHHH
Q 044790 77 YFLVKPIRKNELQNLWQHVW 96 (162)
Q Consensus 77 ~~l~KP~~~~~L~~~i~~~l 96 (162)
.+=.-..-.......++..+
T Consensus 229 KiNi~T~l~~a~~~~~~~~~ 248 (286)
T PRK08610 229 KINVNTENQIASAKAVRDVL 248 (286)
T ss_pred EEEeccHHHHHHHHHHHHHH
Confidence 66333222233344444443
No 325
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=60.09 E-value=38 Score=31.31 Aligned_cols=76 Identities=13% Similarity=0.235 Sum_probs=50.7
Q ss_pred CCccEEEEc-CCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 044790 21 DQIDLVLTE-VLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVWRKC 99 (162)
Q Consensus 21 ~~~DlvllD-~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~~ 99 (162)
.++-|+|+| ++|-....+..+.++-+.+. .++.+|++|. +...+...+..-+.-|-.||++.+++...|+.++...
T Consensus 118 gk~KViIIDEAh~LT~eAqNALLKtLEEPP-~~vrFILaTT--e~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~E 194 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSSFNALLKTLEEPP-EHVKFLLATT--DPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQE 194 (944)
T ss_pred CCcEEEEEechHhcCHHHHHHHHHHHhccC-CCeEEEEECC--CchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHc
Confidence 356799998 55544455555444444321 3455665543 3444566677778899999999999999999987763
No 326
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=59.72 E-value=67 Score=23.52 Aligned_cols=83 Identities=10% Similarity=0.079 Sum_probs=50.1
Q ss_pred EEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCC
Q 044790 3 VIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKP 82 (162)
Q Consensus 3 v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP 82 (162)
|....+..++++.++.. -.--+=++-+.+...+..++++.+++.. +.+.+=.-+ --..+....|++.|++.++..-
T Consensus 17 v~r~~~~~~~~~~~~~~-~~~Gv~~vqlr~k~~~~~e~~~~~~~~~--~~~~~g~gt-vl~~d~~~~A~~~gAdgv~~p~ 92 (187)
T PRK07455 17 VIRAPDLELGLQMAEAV-AAGGMRLIEITWNSDQPAELISQLREKL--PECIIGTGT-ILTLEDLEEAIAAGAQFCFTPH 92 (187)
T ss_pred EEEcCCHHHHHHHHHHH-HHCCCCEEEEeCCCCCHHHHHHHHHHhC--CCcEEeEEE-EEcHHHHHHHHHcCCCEEECCC
Confidence 44556777777766542 1222344455566677888888887654 333111111 1123778899999999888777
Q ss_pred CCHHHHH
Q 044790 83 IRKNELQ 89 (162)
Q Consensus 83 ~~~~~L~ 89 (162)
++.+.+.
T Consensus 93 ~~~~~~~ 99 (187)
T PRK07455 93 VDPELIE 99 (187)
T ss_pred CCHHHHH
Confidence 7755444
No 327
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=59.64 E-value=77 Score=25.55 Aligned_cols=60 Identities=15% Similarity=0.144 Sum_probs=43.6
Q ss_pred HHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeC
Q 044790 9 GLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVK 81 (162)
Q Consensus 9 ~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~K 81 (162)
..+.++.+.+ .+|.+|++-...|. + +++++. ..+.|+.... ......++.+.|+|.++..
T Consensus 71 ~~~~l~vi~e--~~v~~V~~~~G~P~----~-~~~lk~----~Gi~v~~~v~--s~~~A~~a~~~GaD~vVaq 130 (320)
T cd04743 71 RAAQLAVVRA--IKPTFALIAGGRPD----Q-ARALEA----IGISTYLHVP--SPGLLKQFLENGARKFIFE 130 (320)
T ss_pred hHHHHHHHHh--cCCcEEEEcCCChH----H-HHHHHH----CCCEEEEEeC--CHHHHHHHHHcCCCEEEEe
Confidence 4577888877 78999988766554 2 466765 3566665553 5677788999999999976
No 328
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=59.59 E-value=47 Score=25.92 Aligned_cols=68 Identities=18% Similarity=0.236 Sum_probs=39.9
Q ss_pred HHHHHHHHhhCCCccEEEEcCCC---CCCC----HHHHHHHHHccCCCCCCcEEEEecCC-C-----HHHHHHHHHcCCc
Q 044790 10 LQAWKILEDLMDQIDLVLTEVLM---PCLS----GIGLLRKIMNHKTCKNIPVIMMSSHD-S-----MSIVFKCLSKGAV 76 (162)
Q Consensus 10 ~eal~~l~~~~~~~DlvllD~~m---p~~~----g~~~~~~ir~~~~~~~~piI~lt~~~-~-----~~~~~~a~~~Ga~ 76 (162)
..|.+.+... ...+++||..-- +.-. -+..+..+++. .++||++-+++. . ......|..+||+
T Consensus 151 ~~A~e~i~~~-Gn~~i~L~~rG~~t~~~Y~~~~vdl~~i~~lk~~---~~~pV~~D~sHs~G~~~~v~~~~~aAva~Ga~ 226 (266)
T PRK13398 151 LYAAEYIMSE-GNENVVLCERGIRTFETYTRNTLDLAAVAVIKEL---SHLPIIVDPSHATGRRELVIPMAKAAIAAGAD 226 (266)
T ss_pred HHHHHHHHhc-CCCeEEEEECCCCCCCCCCHHHHHHHHHHHHHhc---cCCCEEEeCCCcccchhhHHHHHHHHHHcCCC
Confidence 3455666542 457889887632 3322 23334555543 468988845543 3 4566778889998
Q ss_pred eE-EeC
Q 044790 77 YF-LVK 81 (162)
Q Consensus 77 ~~-l~K 81 (162)
+. |-|
T Consensus 227 Gl~iE~ 232 (266)
T PRK13398 227 GLMIEV 232 (266)
T ss_pred EEEEec
Confidence 65 444
No 329
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=59.42 E-value=67 Score=25.30 Aligned_cols=41 Identities=15% Similarity=0.130 Sum_probs=33.6
Q ss_pred HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEE
Q 044790 38 IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFL 79 (162)
Q Consensus 38 ~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l 79 (162)
++.+.++++.- .+.+|||....-...+.+.+++.+||+...
T Consensus 239 l~~v~~~~~~~-~~~ipIig~GGI~~~~da~~~l~aGA~~V~ 279 (299)
T cd02940 239 LRAVSQIARAP-EPGLPISGIGGIESWEDAAEFLLLGASVVQ 279 (299)
T ss_pred HHHHHHHHHhc-CCCCcEEEECCCCCHHHHHHHHHcCCChhe
Confidence 67777777642 137999999999999999999999999764
No 330
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=59.41 E-value=59 Score=26.63 Aligned_cols=73 Identities=15% Similarity=0.204 Sum_probs=55.2
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 044790 21 DQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVWRKC 99 (162)
Q Consensus 21 ~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~~ 99 (162)
...|+|= +..|++...+.++.|++.. .+|+|.=. +.+...+..|++.|++..=.-|=+...+...++.++...
T Consensus 54 aGceiVR--vav~~~~~a~al~~I~~~~---~iPlvADI-HFd~~lAl~a~~~G~~~iRINPGNig~~~~~v~~vv~~a 126 (360)
T PRK00366 54 AGCEIVR--VAVPDMEAAAALPEIKKQL---PVPLVADI-HFDYRLALAAAEAGADALRINPGNIGKRDERVREVVEAA 126 (360)
T ss_pred cCCCEEE--EccCCHHHHHhHHHHHHcC---CCCEEEec-CCCHHHHHHHHHhCCCEEEECCCCCCchHHHHHHHHHHH
Confidence 4566664 4568888999999998764 68877544 568888999999999999999977766556666665544
No 331
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=59.38 E-value=69 Score=23.57 Aligned_cols=83 Identities=18% Similarity=0.218 Sum_probs=45.0
Q ss_pred HHHHHHHHHhhCCCccEEEEcCCCCCCCHH-------HHHHHHHccCCCCCC-cEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 9 GLQAWKILEDLMDQIDLVLTEVLMPCLSGI-------GLLRKIMNHKTCKNI-PVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 9 ~~eal~~l~~~~~~~DlvllD~~mp~~~g~-------~~~~~ir~~~~~~~~-piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
..+.++.+.. .+|.|+++..-|+..|. +.++.++.......+ ++|++..--..+.+.++.+.|++.++.
T Consensus 121 ~~e~~~~~~~---~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~~~nv~~l~~~GaD~vvv 197 (220)
T PRK05581 121 PLEPLEDVLD---LLDLVLLMSVNPGFGGQKFIPEVLEKIRELRKLIDERGLDILIEVDGGINADNIKECAEAGADVFVA 197 (220)
T ss_pred CHHHHHHHHh---hCCEEEEEEECCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHcCCCEEEE
Confidence 3444554433 46877776654655442 344444432110122 455565556668888888999997754
Q ss_pred -----CCCCHHHHHHHHHH
Q 044790 81 -----KPIRKNELQNLWQH 94 (162)
Q Consensus 81 -----KP~~~~~L~~~i~~ 94 (162)
+.-++.+....+++
T Consensus 198 gSai~~~~d~~~~~~~~~~ 216 (220)
T PRK05581 198 GSAVFGAPDYKEAIDSLRA 216 (220)
T ss_pred ChhhhCCCCHHHHHHHHHH
Confidence 33344444444443
No 332
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=59.37 E-value=88 Score=26.85 Aligned_cols=56 Identities=14% Similarity=-0.016 Sum_probs=37.1
Q ss_pred CCccEEEEcCCCCCCCH--HHHHHHHHccCCCCC-CcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 21 DQIDLVLTEVLMPCLSG--IGLLRKIMNHKTCKN-IPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 21 ~~~DlvllD~~mp~~~g--~~~~~~ir~~~~~~~-~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
..+|+|++| .-++.+- .+.+++||... +. ++|+ ...-...+.+..++++||+.+..
T Consensus 253 aGvd~i~vd-~a~g~~~~~~~~i~~ir~~~--~~~~~V~-aGnV~t~e~a~~li~aGAd~I~v 311 (502)
T PRK07107 253 AGADVLCID-SSEGYSEWQKRTLDWIREKY--GDSVKVG-AGNVVDREGFRYLAEAGADFVKV 311 (502)
T ss_pred hCCCeEeec-CcccccHHHHHHHHHHHHhC--CCCceEE-eccccCHHHHHHHHHcCCCEEEE
Confidence 579999999 4444322 67788888753 32 3333 32334677888999999988643
No 333
>PRK07413 hypothetical protein; Validated
Probab=59.35 E-value=48 Score=27.43 Aligned_cols=53 Identities=8% Similarity=0.129 Sum_probs=35.2
Q ss_pred HHHHHhhCCCccEEEEcCCC-----CCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHH
Q 044790 13 WKILEDLMDQIDLVLTEVLM-----PCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKC 70 (162)
Q Consensus 13 l~~l~~~~~~~DlvllD~~m-----p~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a 70 (162)
.+.+.. ..+|+||+|=.+ .-.+--++++.|+..+ +.+-|| +|.+..+....+.
T Consensus 118 ~~~i~s--g~ydlvILDEi~~Al~~gll~~eevl~~L~~rP--~~~evV-LTGR~ap~~Lie~ 175 (382)
T PRK07413 118 KGAIAS--GLYSVVVLDELNPVLDLGLLPVDEVVNTLKSRP--EGLEII-ITGRAAPQSLLDI 175 (382)
T ss_pred HHHHhC--CCCCEEEEehhHHHHHCCCccHHHHHHHHHhCC--CCCEEE-EeCCCCCHHHHHh
Confidence 334555 789999999643 3356667888888765 555555 7777766655544
No 334
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=59.25 E-value=91 Score=24.94 Aligned_cols=61 Identities=11% Similarity=0.023 Sum_probs=43.4
Q ss_pred HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeC-------CCCHHHHHHHHHHHHHhccC
Q 044790 38 IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVK-------PIRKNELQNLWQHVWRKCHS 101 (162)
Q Consensus 38 ~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~K-------P~~~~~L~~~i~~~l~~~~~ 101 (162)
++.++++++. ..+|||....-.+.+++.+.+.+||+..-.= |.-...+..-|...+.+...
T Consensus 226 l~~v~~v~~~---~~ipIig~GGI~s~~Da~e~l~aGA~~Vqv~ta~~~~gp~~~~~i~~~L~~~l~~~g~ 293 (325)
T cd04739 226 LRWIAILSGR---VKASLAASGGVHDAEDVVKYLLAGADVVMTTSALLRHGPDYIGTLLAGLEAWMEEHGY 293 (325)
T ss_pred HHHHHHHHcc---cCCCEEEECCCCCHHHHHHHHHcCCCeeEEehhhhhcCchHHHHHHHHHHHHHHHcCC
Confidence 3445555543 4799999999999999999999999976322 55555666667666665443
No 335
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=59.23 E-value=44 Score=26.43 Aligned_cols=67 Identities=16% Similarity=0.166 Sum_probs=43.7
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHHHh
Q 044790 23 IDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVWRK 98 (162)
Q Consensus 23 ~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 98 (162)
.|++|+=.. .+.-|+.+++.+. ..+|||........ .+.+.-|..+|+..|-+.++|...|..++..
T Consensus 279 ad~~v~~S~-~Eg~~~~~lEAma-----~G~PvI~~~~~~g~---~~~v~~~~~G~lv~~~d~~~la~~i~~ll~~ 345 (372)
T cd04949 279 AQLSLLTSQ-SEGFGLSLMEALS-----HGLPVISYDVNYGP---SEIIEDGENGYLVPKGDIEALAEAIIELLND 345 (372)
T ss_pred hhEEEeccc-ccccChHHHHHHh-----CCCCEEEecCCCCc---HHHcccCCCceEeCCCcHHHHHHHHHHHHcC
Confidence 345444322 2334556666663 47898875432111 2345678899999999999999999998764
No 336
>PF08415 NRPS: Nonribosomal peptide synthase; InterPro: IPR013624 This domain is found in bacterial non-ribosomal peptide synthetases (NRPS). NRPS are megaenzymes organised as iterative modules, one for each amino acid to be built into the peptide product []. NRPS modules are involved in epothilone biosynthesis (EpoB), myxothiazol biosynthesis (MtaC and MtaD), and other functions []. The NRPS domain tends to be found together with the condensation domain (IPR001242 from INTERPRO) and the phosphopantetheine binding domain (IPR006163 from INTERPRO).
Probab=59.00 E-value=18 Score=21.11 Aligned_cols=31 Identities=23% Similarity=0.400 Sum_probs=21.6
Q ss_pred CCCHHHHHHHHHcc--CCCCCCcEEEEecCCCH
Q 044790 34 CLSGIGLLRKIMNH--KTCKNIPVIMMSSHDSM 64 (162)
Q Consensus 34 ~~~g~~~~~~ir~~--~~~~~~piI~lt~~~~~ 64 (162)
..+|+++++++.+. ......|||+.+.-...
T Consensus 3 ~~sGv~vlRel~r~~~~~~~~~PVVFTS~Lg~~ 35 (58)
T PF08415_consen 3 SFSGVEVLRELARRGGGRAAVMPVVFTSMLGVD 35 (58)
T ss_pred cccHHHHHHHHHHhcCCCCCcCCEEEeCCCCCC
Confidence 46899999999665 33356888877765433
No 337
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=58.87 E-value=63 Score=25.57 Aligned_cols=53 Identities=9% Similarity=0.172 Sum_probs=40.6
Q ss_pred HHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHH
Q 044790 39 GLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHV 95 (162)
Q Consensus 39 ~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~ 95 (162)
+.++.+|+.. +..+|.+ .....+.+.+++++|+|-.+.--++++++.+.+..+
T Consensus 178 ~av~~~r~~~--~~~kIeV--Ev~tleqa~ea~~agaDiI~LDn~~~e~l~~av~~~ 230 (284)
T PRK06096 178 GAINQLRRHA--PEKKIVV--EADTPKEAIAALRAQPDVLQLDKFSPQQATEIAQIA 230 (284)
T ss_pred HHHHHHHHhC--CCCCEEE--ECCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Confidence 4566666643 4555333 335788899999999999999999999999999754
No 338
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=58.81 E-value=72 Score=25.82 Aligned_cols=70 Identities=20% Similarity=0.130 Sum_probs=51.4
Q ss_pred EEEcCHHHHHHHHHhhCCCccEEEEcCCC-C--------CCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcC
Q 044790 4 IAVENGLQAWKILEDLMDQIDLVLTEVLM-P--------CLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKG 74 (162)
Q Consensus 4 ~~a~~~~eal~~l~~~~~~~DlvllD~~m-p--------~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~G 74 (162)
..+.+..+|....+ ...|.||..=.- . ....+.++.+++..- ..+|||.--+-.+...+..++.+|
T Consensus 132 ~~v~~~~~A~~~~~---~G~d~vI~~g~eAGGH~g~~~~~~~t~~Lv~ev~~~~--~~iPViAAGGI~dg~~i~AAlalG 206 (336)
T COG2070 132 HSVITVREALKAER---AGADAVIAQGAEAGGHRGGVDLEVSTFALVPEVVDAV--DGIPVIAAGGIADGRGIAAALALG 206 (336)
T ss_pred EEeCCHHHHHHHHh---CCCCEEEecCCcCCCcCCCCCCCccHHHHHHHHHHHh--cCCCEEEecCccChHHHHHHHHhc
Confidence 45677788877655 478888876542 2 223367778887653 229999999999999999999999
Q ss_pred CceE
Q 044790 75 AVYF 78 (162)
Q Consensus 75 a~~~ 78 (162)
|++.
T Consensus 207 A~gV 210 (336)
T COG2070 207 ADGV 210 (336)
T ss_pred cHHH
Confidence 9964
No 339
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=58.66 E-value=41 Score=27.79 Aligned_cols=46 Identities=13% Similarity=0.245 Sum_probs=33.1
Q ss_pred HHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCC
Q 044790 11 QAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHD 62 (162)
Q Consensus 11 eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~ 62 (162)
+..+.+.. ++||++|+ |.-|+.+ +.+.+++|+.. +++|+|-..+..
T Consensus 76 ~~~~~i~~--~kpD~~i~-IDsPdFn-l~vak~lrk~~--p~i~iihYV~Ps 121 (381)
T COG0763 76 ELVRYILA--NKPDVLIL-IDSPDFN-LRVAKKLRKAG--PKIKIIHYVSPS 121 (381)
T ss_pred HHHHHHHh--cCCCEEEE-eCCCCCc-hHHHHHHHHhC--CCCCeEEEECcc
Confidence 44455555 78997764 3346766 68899999876 899999887654
No 340
>PRK10060 RNase II stability modulator; Provisional
Probab=58.62 E-value=68 Score=28.26 Aligned_cols=87 Identities=15% Similarity=0.158 Sum_probs=57.8
Q ss_pred EcCHHHHHHHHHhhCCCccEEEEcCCC----C-CCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCc---e
Q 044790 6 VENGLQAWKILEDLMDQIDLVLTEVLM----P-CLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAV---Y 77 (162)
Q Consensus 6 a~~~~eal~~l~~~~~~~DlvllD~~m----p-~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~---~ 77 (162)
|.+|-..+..+.. -++|.|=+|-.. . ......+++.|-.......+.+| ...-+..+....+.+.|++ +
T Consensus 562 fGtg~ssl~~L~~--l~~d~iKiD~sfv~~i~~~~~~~~~v~~ii~~a~~lg~~vi-AeGVEt~~q~~~l~~~G~d~~QG 638 (663)
T PRK10060 562 FGTGYSSLSQLAR--FPIDAIKLDQSFVRDIHKQPVSQSLVRAIVAVAQALNLQVI-AEGVETAKEDAFLTKNGVNERQG 638 (663)
T ss_pred CCCchhhHHHHHh--CCCCEEEECHHHHhccccCcchHHHHHHHHHHHHHCCCcEE-EecCCCHHHHHHHHHcCCCEEec
Confidence 4566677777777 789999888522 2 23345555555432211455555 5556677777778889997 3
Q ss_pred -EEeCCCCHHHHHHHHHHH
Q 044790 78 -FLVKPIRKNELQNLWQHV 95 (162)
Q Consensus 78 -~l~KP~~~~~L~~~i~~~ 95 (162)
|+.||...+++...+++.
T Consensus 639 y~~~~P~~~~~~~~~l~~~ 657 (663)
T PRK10060 639 FLFAKPMPAVAFERWYKRY 657 (663)
T ss_pred CccCCCCCHHHHHHHHHhh
Confidence 488999999998887654
No 341
>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function. They are found as separate proteins and as a C-terminal domain to tRNA (guanine-N(1)-)-methyltransferases to which they are structurally related. ; PDB: 3DCM_X.
Probab=58.58 E-value=56 Score=24.13 Aligned_cols=75 Identities=21% Similarity=0.288 Sum_probs=38.0
Q ss_pred EEEEcCHHHHHHHHHhhC-CCccEEEEcCC-CCCCCHHHHHHHHHccCCCCCCcEEEEe--cCCCHHHHHHHHHcCCceE
Q 044790 3 VIAVENGLQAWKILEDLM-DQIDLVLTEVL-MPCLSGIGLLRKIMNHKTCKNIPVIMMS--SHDSMSIVFKCLSKGAVYF 78 (162)
Q Consensus 3 v~~a~~~~eal~~l~~~~-~~~DlvllD~~-mp~~~g~~~~~~ir~~~~~~~~piI~lt--~~~~~~~~~~a~~~Ga~~~ 78 (162)
|..+.+.+++++.+++.. .+|-+|..+-. -|..-+++.+++.-.. .+-|++++= +..-.+++. ...||
T Consensus 84 v~~~~sle~a~~~I~~~~G~~P~~v~TsAr~~~~~is~~~lr~~l~~---~~~P~LllFGTGwGL~~ev~-----~~~D~ 155 (185)
T PF09936_consen 84 VRVVDSLEEAIEDIEEEEGKRPLLVATSARKYPNTISYAELRRMLEE---EDRPVLLLFGTGWGLAPEVM-----EQCDY 155 (185)
T ss_dssp EEEESSHHHHHHHHHHHHSS--EEEE--SS--SS-B-HHHHHHHHHH-----S-EEEEE--TT---HHHH-----TT-SE
T ss_pred hccHhhHHHHHHHHHHHhCCCCEEEEecCcCCCCCcCHHHHHHHHhc---cCCeEEEEecCCCCCCHHHH-----HhcCe
Confidence 568899999999987633 46888888887 4666677777665422 244555543 444443332 23468
Q ss_pred EeCCCCH
Q 044790 79 LVKPIRK 85 (162)
Q Consensus 79 l~KP~~~ 85 (162)
+..|+.-
T Consensus 156 iLePI~g 162 (185)
T PF09936_consen 156 ILEPIRG 162 (185)
T ss_dssp EB--TTT
T ss_pred eEccccc
Confidence 8888643
No 342
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=58.54 E-value=72 Score=25.22 Aligned_cols=54 Identities=11% Similarity=0.107 Sum_probs=42.1
Q ss_pred HHHHHHHHccCCCC-CCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHH
Q 044790 38 IGLLRKIMNHKTCK-NIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHV 95 (162)
Q Consensus 38 ~~~~~~ir~~~~~~-~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~ 95 (162)
.+.++++|+.. + ..+|.+=.. ..+...++++.|+|-.+.-.++++++.+.+..+
T Consensus 181 ~~ai~~~r~~~--~~~~kIeVEv~--tleea~ea~~~gaDiI~LDn~s~e~l~~av~~~ 235 (281)
T PRK06106 181 REAIRRARAGV--GHLVKIEVEVD--TLDQLEEALELGVDAVLLDNMTPDTLREAVAIV 235 (281)
T ss_pred HHHHHHHHHhC--CCCCcEEEEeC--CHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHh
Confidence 35667777654 3 455665554 677899999999999999999999999999854
No 343
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=58.51 E-value=75 Score=23.76 Aligned_cols=85 Identities=13% Similarity=0.178 Sum_probs=52.9
Q ss_pred EEEEcCHHHHHHHHHhhC-CCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeC
Q 044790 3 VIAVENGLQAWKILEDLM-DQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVK 81 (162)
Q Consensus 3 v~~a~~~~eal~~l~~~~-~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~K 81 (162)
|....+.+++++..+... ..+. ++.+.|-.-..++.++.+++.. +++ +|=...--+.+.+.++.++|++ ||.-
T Consensus 9 Vir~~~~~~a~~ia~al~~gGi~--~iEit~~tp~a~~~I~~l~~~~--~~~-~vGAGTVl~~e~a~~ai~aGA~-FivS 82 (201)
T PRK06015 9 VLLIDDVEHAVPLARALAAGGLP--AIEITLRTPAALDAIRAVAAEV--EEA-IVGAGTILNAKQFEDAAKAGSR-FIVS 82 (201)
T ss_pred EEEcCCHHHHHHHHHHHHHCCCC--EEEEeCCCccHHHHHHHHHHHC--CCC-EEeeEeCcCHHHHHHHHHcCCC-EEEC
Confidence 344556677666655421 3444 4566666677999999998654 442 3333344578889999999997 5555
Q ss_pred CCCHHHHHHHHH
Q 044790 82 PIRKNELQNLWQ 93 (162)
Q Consensus 82 P~~~~~L~~~i~ 93 (162)
|.-..++.+..+
T Consensus 83 P~~~~~vi~~a~ 94 (201)
T PRK06015 83 PGTTQELLAAAN 94 (201)
T ss_pred CCCCHHHHHHHH
Confidence 554555554443
No 344
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=58.44 E-value=58 Score=26.41 Aligned_cols=74 Identities=16% Similarity=0.252 Sum_probs=45.9
Q ss_pred CccEEEEcC-CCCCCCHH-HHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 044790 22 QIDLVLTEV-LMPCLSGI-GLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVWRKC 99 (162)
Q Consensus 22 ~~DlvllD~-~mp~~~g~-~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~~ 99 (162)
.+.++|+|= ++-....+ .+++.+...+ ..+.+|+++. +.......+..-+.-|-.+|++.+++...++.++...
T Consensus 119 ~~kviIIDEa~~l~~~a~naLLk~lEe~~--~~~~fIl~t~--~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~ 194 (363)
T PRK14961 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPP--QHIKFILATT--DVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKE 194 (363)
T ss_pred CceEEEEEChhhcCHHHHHHHHHHHhcCC--CCeEEEEEcC--ChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHc
Confidence 356888874 22111223 2445554433 3455565553 3444555666556788999999999999999887764
No 345
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=58.38 E-value=62 Score=25.88 Aligned_cols=40 Identities=20% Similarity=0.289 Sum_probs=31.8
Q ss_pred HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceE
Q 044790 38 IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYF 78 (162)
Q Consensus 38 ~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~ 78 (162)
++.++.+++.- ...+|||....-...+.+.+.+..||+..
T Consensus 267 l~~v~~l~~~~-~~~ipIi~~GGI~t~~da~e~l~aGAd~V 306 (327)
T cd04738 267 TEVLRELYKLT-GGKIPIIGVGGISSGEDAYEKIRAGASLV 306 (327)
T ss_pred HHHHHHHHHHh-CCCCcEEEECCCCCHHHHHHHHHcCCCHH
Confidence 56677776642 13689999999999999999999999865
No 346
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=58.03 E-value=55 Score=25.54 Aligned_cols=53 Identities=13% Similarity=0.157 Sum_probs=38.9
Q ss_pred HHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHH
Q 044790 40 LLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHV 95 (162)
Q Consensus 40 ~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~ 95 (162)
.++.+|+.. +.-.+|-++.+ ..+...++.+.|+|-+..-|+.+++|...+..+
T Consensus 171 ~v~~~r~~~--~~~~~Igvev~-s~eea~~A~~~gaDyI~ld~~~~e~l~~~~~~~ 223 (268)
T cd01572 171 AVRRARAAA--PFTLKIEVEVE-TLEQLKEALEAGADIIMLDNMSPEELREAVALL 223 (268)
T ss_pred HHHHHHHhC--CCCCeEEEEEC-CHHHHHHHHHcCCCEEEECCcCHHHHHHHHHHc
Confidence 456777643 33345656664 457788999999999999999999888887643
No 347
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=57.82 E-value=76 Score=25.00 Aligned_cols=53 Identities=9% Similarity=0.243 Sum_probs=41.3
Q ss_pred HHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHH
Q 044790 39 GLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHV 95 (162)
Q Consensus 39 ~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~ 95 (162)
+.++.+|+.. +..+|.+= -...+.+.+++++|+|-.+.--++++++...++.+
T Consensus 177 ~av~~~r~~~--~~~kIeVE--v~tleea~ea~~~GaDiI~lDn~~~e~l~~~v~~l 229 (277)
T TIGR01334 177 GAIGRLKQTA--PERKITVE--ADTIEQALTVLQASPDILQLDKFTPQQLHHLHERL 229 (277)
T ss_pred HHHHHHHHhC--CCCCEEEE--CCCHHHHHHHHHcCcCEEEECCCCHHHHHHHHHHH
Confidence 5567777644 45554433 34788899999999999999999999999999865
No 348
>PRK04302 triosephosphate isomerase; Provisional
Probab=57.77 E-value=78 Score=23.70 Aligned_cols=73 Identities=15% Similarity=0.020 Sum_probs=46.4
Q ss_pred EEEcCHHHHHHHHHhhCCCccEEEEcCC-CCC---------CC-HHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHH
Q 044790 4 IAVENGLQAWKILEDLMDQIDLVLTEVL-MPC---------LS-GIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLS 72 (162)
Q Consensus 4 ~~a~~~~eal~~l~~~~~~~DlvllD~~-mp~---------~~-g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~ 72 (162)
.++.+..++.. +.+ ..+|+|-+.-. .-+ .. -.++++.+|+.. ..+||+.-.+-...+.+..+++
T Consensus 119 ~~v~~~~~~~~-~~~--~~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~~--~~~pvi~GggI~~~e~~~~~~~ 193 (223)
T PRK04302 119 VCVNNPETSAA-AAA--LGPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKVN--PDVKVLCGAGISTGEDVKAALE 193 (223)
T ss_pred EEcCCHHHHHH-Hhc--CCCCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhcc--CCCEEEEECCCCCHHHHHHHHc
Confidence 45556555544 444 56777654321 101 11 234566677643 4789998888888999999999
Q ss_pred cCCceEEeC
Q 044790 73 KGAVYFLVK 81 (162)
Q Consensus 73 ~Ga~~~l~K 81 (162)
.|+++++.=
T Consensus 194 ~gadGvlVG 202 (223)
T PRK04302 194 LGADGVLLA 202 (223)
T ss_pred CCCCEEEEe
Confidence 999998754
No 349
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=57.53 E-value=42 Score=29.54 Aligned_cols=47 Identities=11% Similarity=0.157 Sum_probs=33.6
Q ss_pred HHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCC
Q 044790 10 LQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHD 62 (162)
Q Consensus 10 ~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~ 62 (162)
++..+.+.+ .+||++|+ ++-||.+ +.+.+++|+.. ..+|||-..+..
T Consensus 300 ~~l~~~i~~--~kPD~vIl-ID~PgFN-lrLAK~lkk~G--i~ipviyYVsPq 346 (608)
T PRK01021 300 RKLYKTILK--TNPRTVIC-IDFPDFH-FLLIKKLRKRG--YKGKIVHYVCPS 346 (608)
T ss_pred HHHHHHHHh--cCCCEEEE-eCCCCCC-HHHHHHHHhcC--CCCCEEEEECcc
Confidence 345566666 78999888 5668888 56889998864 346888777544
No 350
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=57.34 E-value=86 Score=24.03 Aligned_cols=68 Identities=13% Similarity=0.051 Sum_probs=48.1
Q ss_pred CHHHHHHHHHhhCCC-ccEEEEcCCCCCC-CH--HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHH---HcCCceEEe
Q 044790 8 NGLQAWKILEDLMDQ-IDLVLTEVLMPCL-SG--IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCL---SKGAVYFLV 80 (162)
Q Consensus 8 ~~~eal~~l~~~~~~-~DlvllD~~mp~~-~g--~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~---~~Ga~~~l~ 80 (162)
+..+.++.+.. .. -.+|++|+.--++ .| +++++.+++. ..+|||.-..-...++..+.. ..|+++.|.
T Consensus 150 ~~~~~~~~~~~--~g~~~ii~tdI~~dGt~~G~d~~l~~~l~~~---~~~pviasGGv~s~eDl~~l~~l~~~Gv~gviv 224 (243)
T TIGR01919 150 DLEVLERLLDS--GGCSRVVVTDSKKDGLSGGPNELLLEVVAAR---TDAIVAASGGSSLLDDLRAIKYLDEGGVSVAIG 224 (243)
T ss_pred cHHHHHHHHHh--CCCCEEEEEecCCcccCCCcCHHHHHHHHhh---CCCCEEEECCcCCHHHHHHHHhhccCCeeEEEE
Confidence 44566666665 33 4789999977654 44 5677888765 479999988888888877654 358887764
No 351
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=57.14 E-value=24 Score=25.43 Aligned_cols=54 Identities=15% Similarity=0.136 Sum_probs=32.4
Q ss_pred CCccEEEEcCCCCCCCHHHHH----HHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceE
Q 044790 21 DQIDLVLTEVLMPCLSGIGLL----RKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYF 78 (162)
Q Consensus 21 ~~~DlvllD~~mp~~~g~~~~----~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~ 78 (162)
..+|+||+|--- =.-++. +.+|.... +..+||++|.......+.+.+..-.-+|
T Consensus 85 ~~~d~vv~DPPF---l~~ec~~k~a~ti~~L~k-~~~kii~~Tg~~~~~~~~~ll~~~~~~f 142 (162)
T PF10237_consen 85 GKFDVVVIDPPF---LSEECLTKTAETIRLLLK-PGGKIILCTGEEMEELIKKLLGLRMCDF 142 (162)
T ss_pred CCceEEEECCCC---CCHHHHHHHHHHHHHHhC-ccceEEEecHHHHHHHHHHHhCeeEEeE
Confidence 689999999422 222222 23332211 4678999999888888777773333333
No 352
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=57.07 E-value=81 Score=23.65 Aligned_cols=85 Identities=12% Similarity=0.143 Sum_probs=51.9
Q ss_pred EEEEcCHHHHHHHHHhhC-CCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeC
Q 044790 3 VIAVENGLQAWKILEDLM-DQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVK 81 (162)
Q Consensus 3 v~~a~~~~eal~~l~~~~-~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~K 81 (162)
|....+.+++++..+... ..+.+|=+.+.- .+.++.++++++.. +++.|- ...--+.+.+..+.++|++-.++.
T Consensus 13 Vlr~~~~e~a~~~~~al~~~Gi~~iEit~~t--~~a~~~i~~l~~~~--~~~~vG-AGTVl~~~~a~~a~~aGA~FivsP 87 (204)
T TIGR01182 13 VIRIDDVDDALPLAKALIEGGLRVLEVTLRT--PVALDAIRLLRKEV--PDALIG-AGTVLNPEQLRQAVDAGAQFIVSP 87 (204)
T ss_pred EEecCCHHHHHHHHHHHHHcCCCEEEEeCCC--ccHHHHHHHHHHHC--CCCEEE-EEeCCCHHHHHHHHHcCCCEEECC
Confidence 344556666666554321 457766555544 55889999998754 554333 333457888999999999755544
Q ss_pred CCCHHHHHHHHH
Q 044790 82 PIRKNELQNLWQ 93 (162)
Q Consensus 82 P~~~~~L~~~i~ 93 (162)
-+ ..++.+..+
T Consensus 88 ~~-~~~v~~~~~ 98 (204)
T TIGR01182 88 GL-TPELAKHAQ 98 (204)
T ss_pred CC-CHHHHHHHH
Confidence 44 444444433
No 353
>PLN02461 Probable pyruvate kinase
Probab=56.60 E-value=1.3e+02 Score=25.95 Aligned_cols=72 Identities=11% Similarity=0.145 Sum_probs=44.0
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCC------------CHHHHHHHHHcCCceEEeCC------
Q 044790 21 DQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHD------------SMSIVFKCLSKGAVYFLVKP------ 82 (162)
Q Consensus 21 ~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~------------~~~~~~~a~~~Ga~~~l~KP------ 82 (162)
-...+||+-. .+| ...+.|.+.. |.+||+.+|... ......-++-.|+..++.++
T Consensus 394 l~a~aIiv~T----~sG-~tA~~iSk~R--P~~pIia~t~~~~~~~~~~w~~~~~~~ar~l~L~~GV~P~~~~~~~~~~~ 466 (511)
T PLN02461 394 VKASLIVVLT----RGG-TTARLVAKYR--PAVPILSVVVPEITTDSFDWSCSDEAPARHSLIYRGLIPVLAEGSAKATD 466 (511)
T ss_pred CCCCEEEEEC----CCc-HHHHHHHhhC--CCCCEEEEecCcccccccccccCCHHHhhhhheecceEEEEecccccccc
Confidence 4456666653 233 4455665444 789999998652 33444455667999998764
Q ss_pred -CCHHHHHHHHHHHHHhc
Q 044790 83 -IRKNELQNLWQHVWRKC 99 (162)
Q Consensus 83 -~~~~~L~~~i~~~l~~~ 99 (162)
.+.+++......++...
T Consensus 467 ~~~~~~~i~~a~~~~~~~ 484 (511)
T PLN02461 467 SESTEEILEAAIEHAKKK 484 (511)
T ss_pred cCCHHHHHHHHHHHHHHc
Confidence 35566666555555543
No 354
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=56.54 E-value=94 Score=24.23 Aligned_cols=72 Identities=19% Similarity=0.157 Sum_probs=45.7
Q ss_pred EEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHH----HHHHHHc-cCCCCCCcEEEEecCCCHHHHHHHHHcCCce
Q 044790 3 VIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIG----LLRKIMN-HKTCKNIPVIMMSSHDSMSIVFKCLSKGAVY 77 (162)
Q Consensus 3 v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~----~~~~ir~-~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~ 77 (162)
++.++|.+|+-..+.- ...+| .++--+...++ ....|.. .+ ....+|.-++-..++.+.+....|+++
T Consensus 160 LVEVh~~eEl~rAl~~---ga~iI--GINnRdL~tf~vdl~~t~~la~~~p--~~~~~IsESGI~~~~dv~~l~~~ga~a 232 (254)
T COG0134 160 LVEVHNEEELERALKL---GAKII--GINNRDLTTLEVDLETTEKLAPLIP--KDVILISESGISTPEDVRRLAKAGADA 232 (254)
T ss_pred EEEECCHHHHHHHHhC---CCCEE--EEeCCCcchheecHHHHHHHHhhCC--CCcEEEecCCCCCHHHHHHHHHcCCCE
Confidence 4578888887666653 34444 44333333333 3344432 22 345566667777899999999999999
Q ss_pred EEeC
Q 044790 78 FLVK 81 (162)
Q Consensus 78 ~l~K 81 (162)
||.=
T Consensus 233 ~LVG 236 (254)
T COG0134 233 FLVG 236 (254)
T ss_pred EEec
Confidence 9864
No 355
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=56.40 E-value=72 Score=24.63 Aligned_cols=83 Identities=17% Similarity=0.127 Sum_probs=48.3
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCCCC----------CCHHHHHHHHHc-cCCCCCCcEEEEecCCCHHH----HHHHHH
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLMPC----------LSGIGLLRKIMN-HKTCKNIPVIMMSSHDSMSI----VFKCLS 72 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~mp~----------~~g~~~~~~ir~-~~~~~~~piI~lt~~~~~~~----~~~a~~ 72 (162)
-..+|++.|.+ .++|+++++..||- .+--|.++.++. +..++. ||++=..+...+. ...+..
T Consensus 167 ~e~kaIdiL~~--~~~DalVl~vliPtpGtkm~~~~pp~~eE~i~v~~~AR~~f~~-pv~iGCmrP~Ge~rvk~d~~av~ 243 (275)
T COG1856 167 GEFKAIDILVN--YEPDALVLVVLIPTPGTKMGNSPPPPVEEAIKVVKYARKKFPN-PVSIGCMRPRGEWRVKLDKEAVL 243 (275)
T ss_pred chHHHHHHHhc--CCCCeEEEEEEecCCchhccCCCCcCHHHHHHHHHHHHHhCCC-CeeEeecCcCchhHHHHHHHHHH
Confidence 34578999998 89999999998863 233344444432 223355 7776665554433 344566
Q ss_pred cCCceEEeCCCCHHHHHHHHH
Q 044790 73 KGAVYFLVKPIRKNELQNLWQ 93 (162)
Q Consensus 73 ~Ga~~~l~KP~~~~~L~~~i~ 93 (162)
+|+|..--.|-..-+....++
T Consensus 244 ~gVd~It~P~~~t~e~ak~~r 264 (275)
T COG1856 244 AGVDRITFPPRGTIEYAKSIR 264 (275)
T ss_pred cCCceeecCCccceehhhhhh
Confidence 777765444333334433333
No 356
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=56.17 E-value=60 Score=25.38 Aligned_cols=54 Identities=15% Similarity=0.210 Sum_probs=38.9
Q ss_pred HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHH
Q 044790 38 IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHV 95 (162)
Q Consensus 38 ~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~ 95 (162)
.+.++.+|+.. +.. +|.++.+ ..+...++.+.|++-+..-|+.++.+...++.+
T Consensus 171 ~~av~~~R~~~--~~~-~IgVev~-t~eea~~A~~~gaD~I~ld~~~p~~l~~~~~~~ 224 (272)
T cd01573 171 LKALARLRATA--PEK-KIVVEVD-SLEEALAAAEAGADILQLDKFSPEELAELVPKL 224 (272)
T ss_pred HHHHHHHHHhC--CCC-eEEEEcC-CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHH
Confidence 45677777653 444 4455554 567788899999999999999999887666543
No 357
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=56.06 E-value=70 Score=27.38 Aligned_cols=74 Identities=11% Similarity=0.158 Sum_probs=48.3
Q ss_pred CccEEEEcC-CCCCCCHHHHH-HHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 044790 22 QIDLVLTEV-LMPCLSGIGLL-RKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVWRKC 99 (162)
Q Consensus 22 ~~DlvllD~-~mp~~~g~~~~-~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~~ 99 (162)
.+-++|+|= +|-....+..+ +.|.+-+ +++.+|+.+. +...+...+..-+.-|-.+|++.+++...+..++...
T Consensus 116 ~~KVvIIDEah~Ls~~A~NaLLK~LEePp--~~v~fIlatt--e~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~E 191 (491)
T PRK14964 116 KFKVYIIDEVHMLSNSAFNALLKTLEEPA--PHVKFILATT--EVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKE 191 (491)
T ss_pred CceEEEEeChHhCCHHHHHHHHHHHhCCC--CCeEEEEEeC--ChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHc
Confidence 456888874 33333334433 4443332 4555665553 4445666777778889999999999999999988764
No 358
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=56.01 E-value=85 Score=24.72 Aligned_cols=52 Identities=12% Similarity=0.183 Sum_probs=38.4
Q ss_pred HHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHH
Q 044790 39 GLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQH 94 (162)
Q Consensus 39 ~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~ 94 (162)
..++.+|+.. +..+|. +.. ...+.+.++++.|+|-+..-++.++++.+.++.
T Consensus 178 ~av~~~r~~~--~~~~I~-VEv-~tleea~eA~~~gaD~I~LD~~~~e~l~~~v~~ 229 (277)
T PRK05742 178 QAVAAAHRIA--PGKPVE-VEV-ESLDELRQALAAGADIVMLDELSLDDMREAVRL 229 (277)
T ss_pred HHHHHHHHhC--CCCeEE-EEe-CCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHH
Confidence 3456666643 455544 444 357788999999999999999999999988864
No 359
>PRK09206 pyruvate kinase; Provisional
Probab=55.96 E-value=1.3e+02 Score=25.68 Aligned_cols=70 Identities=19% Similarity=0.218 Sum_probs=42.9
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCC-CHHHHHHHHHHHHHh
Q 044790 21 DQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPI-RKNELQNLWQHVWRK 98 (162)
Q Consensus 21 ~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~-~~~~L~~~i~~~l~~ 98 (162)
-...+|++-. .+| ...+.+.+.. |.+||+.+|.. ......-++-.|+..++..+. +.+++.......+..
T Consensus 369 l~a~aIv~~T----~sG-~tA~~is~~R--P~~pIia~t~~-~~~~r~l~l~~GV~p~~~~~~~~~~~~~~~a~~~~~~ 439 (470)
T PRK09206 369 LDAPLIVVAT----QGG-KSARSVRKYF--PDATILALTTN-EKTARQLVLSKGVVPQLVKEIASTDDFYRLGKELALQ 439 (470)
T ss_pred CCCCEEEEEC----CCc-HHHHHHHhhC--CCCCEEEECCC-HHHHHHhhcccCcEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 4556677653 233 4455665444 78999999974 334445567789999987753 335555555444444
No 360
>PF07364 DUF1485: Protein of unknown function (DUF1485); InterPro: IPR015995 Proteins in this entry are involved in degradation of the cyanobacterial heptapeptide hepatotoxin microcystin LR, and are encoded in the mlr gene cluster []. MlrC from Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) is believed to mediate the last step of peptidolytic degradation of the tetrapeptide. It is suspected to be a metallopeptidase based on homology to known peptidases and its inhibition by metal chelators. The proteins encoded by the mlr cluster may be involved in cell wall peptidoglycan cycling and subsequently act fortuitously in hydrolysis of microcystin LR. This entry represents the N-terminal region of these proteins.; PDB: 3IUU_A.
Probab=55.95 E-value=18 Score=28.68 Aligned_cols=85 Identities=15% Similarity=0.053 Sum_probs=39.2
Q ss_pred HHHHHHHHhhCCCccEEEEcCC-------CCCCCHHHHHHHHHccCCCCCCcEEEEecC-CCHHHHHHHHHcCCceEEeC
Q 044790 10 LQAWKILEDLMDQIDLVLTEVL-------MPCLSGIGLLRKIMNHKTCKNIPVIMMSSH-DSMSIVFKCLSKGAVYFLVK 81 (162)
Q Consensus 10 ~eal~~l~~~~~~~DlvllD~~-------mp~~~g~~~~~~ir~~~~~~~~piI~lt~~-~~~~~~~~a~~~Ga~~~l~K 81 (162)
.+.++.++.. .++|.|+++++ .++.+ .+++++||..- .+++||++.-.. .+.....-...-.+..|-..
T Consensus 85 ~eil~~l~~a-gp~Dgv~L~LHGAmv~e~~~D~E-G~Ll~rvR~~v-Gp~vpI~~tlDlHaNvs~~mv~~ad~~~~yrty 161 (292)
T PF07364_consen 85 DEILDRLRAA-GPLDGVLLDLHGAMVAEGYDDGE-GDLLRRVRAIV-GPDVPIAATLDLHANVSPRMVEAADIIVGYRTY 161 (292)
T ss_dssp HHHHHHHHHS----SEEEEEE-S---BSS-SSHH-HHHHHHHHHHH-TTTSEEEEEE-TT----HHHHHH-SEEEE---S
T ss_pred HHHHHHHHhc-CCcCEEEEeccCcEeecCCCCch-HHHHHHHHHHh-CCCCeEEEEeCCCCCccHHHHHhCCEEEEcCCC
Confidence 3455666662 57999999984 34444 47899999842 267887765542 22222222222345556566
Q ss_pred C-CCHHHHHHHHHHHHH
Q 044790 82 P-IRKNELQNLWQHVWR 97 (162)
Q Consensus 82 P-~~~~~L~~~i~~~l~ 97 (162)
| ++..+=-.+.-+++.
T Consensus 162 PH~D~~etg~~aa~ll~ 178 (292)
T PF07364_consen 162 PHIDMYETGERAARLLL 178 (292)
T ss_dssp S---HHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHH
Confidence 6 444333333333333
No 361
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=55.93 E-value=65 Score=24.99 Aligned_cols=53 Identities=13% Similarity=0.022 Sum_probs=35.5
Q ss_pred cCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHH
Q 044790 7 ENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMS 65 (162)
Q Consensus 7 ~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~ 65 (162)
.+....+..+.. ..||+|++-.. ..++..+++.+++.. ...+++.........
T Consensus 179 ~d~~~~v~~l~~--~~pd~v~~~~~--~~~~~~~~~~~~~~G--~~~~~~~~~~~~~~~ 231 (312)
T cd06346 179 SSYSSEVAAAAA--GGPDALVVIGY--PETGSGILRSAYEQG--LFDKFLLTDGMKSDS 231 (312)
T ss_pred CCHHHHHHHHHh--cCCCEEEEecc--cchHHHHHHHHHHcC--CCCceEeeccccChH
Confidence 466677777877 78999987643 337788888888765 456666554433433
No 362
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=55.89 E-value=72 Score=24.87 Aligned_cols=53 Identities=11% Similarity=0.133 Sum_probs=38.8
Q ss_pred HHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHH
Q 044790 40 LLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHV 95 (162)
Q Consensus 40 ~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~ 95 (162)
.++.+|+.. +.-..|.++.+ ..+...+++..|+|-+..-|+.++.+...++.+
T Consensus 170 ~v~~~r~~~--~~~~~I~vev~-t~eea~~A~~~gaD~I~ld~~~~e~l~~~v~~i 222 (269)
T cd01568 170 AVKRARAAA--PFEKKIEVEVE-TLEEAEEALEAGADIIMLDNMSPEELKEAVKLL 222 (269)
T ss_pred HHHHHHHhC--CCCCeEEEecC-CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Confidence 467777654 42334556654 567788999999999999999999988877643
No 363
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=55.83 E-value=22 Score=26.22 Aligned_cols=77 Identities=12% Similarity=0.174 Sum_probs=47.7
Q ss_pred EcCHHHHHHHHHhhCCCccEEEEcCCCCC-----CCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCc----
Q 044790 6 VENGLQAWKILEDLMDQIDLVLTEVLMPC-----LSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAV---- 76 (162)
Q Consensus 6 a~~~~eal~~l~~~~~~~DlvllD~~mp~-----~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~---- 76 (162)
+..+...++.+.. .+||.|-+|..+.. .....+++.+........++| +++.-........+...|++
T Consensus 153 ~g~~~~~~~~l~~--~~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v-ia~gVe~~~~~~~~~~~gi~~~QG 229 (240)
T cd01948 153 FGTGYSSLSYLKR--LPVDYLKIDRSFVRDIETDPEDRAIVRAIIALAHSLGLKV-VAEGVETEEQLELLRELGCDYVQG 229 (240)
T ss_pred CCCcHhhHHHHHh--CCCCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHCCCeE-EEEecCCHHHHHHHHHcCCCeeee
Confidence 3455566677777 77899988864321 233445555544221134544 46777888888888899985
Q ss_pred eEEeCCCCH
Q 044790 77 YFLVKPIRK 85 (162)
Q Consensus 77 ~~l~KP~~~ 85 (162)
.|+.||...
T Consensus 230 ~~~~~p~~~ 238 (240)
T cd01948 230 YLFSRPLPA 238 (240)
T ss_pred ceeccCCCC
Confidence 346677654
No 364
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=55.69 E-value=58 Score=28.00 Aligned_cols=72 Identities=11% Similarity=0.094 Sum_probs=47.9
Q ss_pred CCccEEEEcCCCCC-----CCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHH
Q 044790 21 DQIDLVLTEVLMPC-----LSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHV 95 (162)
Q Consensus 21 ~~~DlvllD~~mp~-----~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~ 95 (162)
.+..+|++=++-.+ .+|++-++ +.......|+..+.++..-+ .-+...|..+|+.+ ..++|...+++.
T Consensus 473 ~~Lpvv~vV~NN~Giyg~d~~~~~~I~---e~~~~~~~p~~~l~~~~rY~--~v~ka~G~kG~~v~--t~~el~~~l~~a 545 (571)
T KOG1185|consen 473 YKLPVVIVVGNNNGIYGLDDDGWKQIS---EQDPTLDLPPTALLANTRYD--KVAKAFGGKGYFVS--TVEELLAALQQA 545 (571)
T ss_pred hcCCeEEEEecCCcccccCcccHHHHh---hcCcccCCCcccccccccHH--HHHHHcCCCceeeC--CHHHHHHHHHHH
Confidence 45666665544433 35565544 22223677888888765554 44556799999999 789999999988
Q ss_pred HHhc
Q 044790 96 WRKC 99 (162)
Q Consensus 96 l~~~ 99 (162)
.+..
T Consensus 546 ~q~~ 549 (571)
T KOG1185|consen 546 CQDT 549 (571)
T ss_pred HhcC
Confidence 7765
No 365
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=55.53 E-value=48 Score=25.74 Aligned_cols=43 Identities=14% Similarity=0.124 Sum_probs=27.4
Q ss_pred HHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecC
Q 044790 11 QAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSH 61 (162)
Q Consensus 11 eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~ 61 (162)
+.++.++. ..+|+||+| +|-..|..-+..+.... . -+|++|..
T Consensus 157 qll~~~~~--~~~D~vIID--~PP~~g~~d~~i~~~~~---~-g~viVt~p 199 (265)
T COG0489 157 QLLEDVLW--GEYDYVIID--TPPGTGDADATVLQRIP---D-GVVIVTTP 199 (265)
T ss_pred HHHHHHhc--cCCCEEEEe--CCCCchHHHHHHHhccC---C-eEEEEeCC
Confidence 34444443 349999999 57788877777776643 3 34445543
No 366
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=55.41 E-value=1.1e+02 Score=24.56 Aligned_cols=59 Identities=17% Similarity=0.169 Sum_probs=39.2
Q ss_pred HHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeC
Q 044790 12 AWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVK 81 (162)
Q Consensus 12 al~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~K 81 (162)
-++.+.+ .++++|.+-.-+|. -+.++.++. ..+.++.... .......+.+.|+|.++..
T Consensus 105 ~~~~~~~--~~~~~v~~~~G~p~---~~~i~~l~~----~gi~v~~~v~--s~~~A~~a~~~G~D~iv~q 163 (330)
T PF03060_consen 105 QLDVALE--AKPDVVSFGFGLPP---PEVIERLHA----AGIKVIPQVT--SVREARKAAKAGADAIVAQ 163 (330)
T ss_dssp HHHHHHH--S--SEEEEESSSC----HHHHHHHHH----TT-EEEEEES--SHHHHHHHHHTT-SEEEEE
T ss_pred ccccccc--cceEEEEeecccch---HHHHHHHHH----cCCccccccC--CHHHHHHhhhcCCCEEEEe
Confidence 3444445 57899999887775 356777766 4566666554 6777889999999999877
No 367
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=55.36 E-value=1.1e+02 Score=24.90 Aligned_cols=68 Identities=13% Similarity=0.217 Sum_probs=51.0
Q ss_pred EcCHHHHHHHHHhhCCCccEEEEcCC----------CCC---CCHHHHHHHHHccCCCCCCcEEEEecCCC---------
Q 044790 6 VENGLQAWKILEDLMDQIDLVLTEVL----------MPC---LSGIGLLRKIMNHKTCKNIPVIMMSSHDS--------- 63 (162)
Q Consensus 6 a~~~~eal~~l~~~~~~~DlvllD~~----------mp~---~~g~~~~~~ir~~~~~~~~piI~lt~~~~--------- 63 (162)
.++.++|.+++++ ..+|.+=+.+- -|. .+ |+.++.|++.- +.+|+++=.+..-
T Consensus 170 ~T~PeeA~~Fv~~--TgvD~LAvaiGt~HG~Yk~~~~p~~~~Ld-~~rL~eI~~~v--~~vPLVLHGgSG~p~~~~~~~~ 244 (347)
T TIGR01521 170 LTDPEEAADFVKK--TKVDALAVAIGTSHGAYKFTRKPTGEVLA-IQRIEEIHARL--PDTHLVMHGSSSVPQEWLDIIN 244 (347)
T ss_pred CCCHHHHHHHHHH--HCcCEEehhcccccCCcCCCCCCChhhcC-HHHHHHHHccC--CCCCEEEeCCCCCchHhhHHHH
Confidence 6789999999998 78998877662 122 33 77888887753 4689887776653
Q ss_pred -------------HHHHHHHHHcCCceE
Q 044790 64 -------------MSIVFKCLSKGAVYF 78 (162)
Q Consensus 64 -------------~~~~~~a~~~Ga~~~ 78 (162)
.+.+.+|.+.|+.-+
T Consensus 245 ~~~~~~~~~~g~p~e~i~~ai~~GI~KV 272 (347)
T TIGR01521 245 EYGGEIKETYGVPVEEIVEGIKYGVRKV 272 (347)
T ss_pred hhcccccccCCCCHHHHHHHHHCCCeeE
Confidence 477889999998766
No 368
>cd01149 HutB Hemin binding protein HutB. These proteins have been shown to function as initial receptors in ABC transport of hemin and hemoproteins in many eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=55.27 E-value=46 Score=24.73 Aligned_cols=74 Identities=12% Similarity=0.079 Sum_probs=41.7
Q ss_pred HHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHH-cCCceEEeCCCCHHHHHHHH
Q 044790 14 KILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLS-KGAVYFLVKPIRKNELQNLW 92 (162)
Q Consensus 14 ~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~-~Ga~~~l~KP~~~~~L~~~i 92 (162)
|.+.. ..|||||...... .-...+.+++ ..+|++++..........+.+. .| ..+-|.-..+++...+
T Consensus 52 E~i~~--l~PDlIi~~~~~~---~~~~~~~l~~----~gipvv~~~~~~~~~~~~~~~~~lg--~i~g~e~~A~~l~~~~ 120 (235)
T cd01149 52 EGVLS--LKPTLVIASDEAG---PPEALDQLRA----AGVPVVTVPSTPTLDGLLTKIRQVA--QALGVPEKGEALAQEV 120 (235)
T ss_pred HHhhc--cCCCEEEEcCCCC---CHHHHHHHHH----cCCeEEEecCCCCHHHHHHHHHHHH--HHhCCHHHHHHHHHHH
Confidence 44555 6799998753322 1255566654 4688888865433433333332 22 1344555667777777
Q ss_pred HHHHHh
Q 044790 93 QHVWRK 98 (162)
Q Consensus 93 ~~~l~~ 98 (162)
++.+..
T Consensus 121 ~~~i~~ 126 (235)
T cd01149 121 RQRLAA 126 (235)
T ss_pred HHHHHH
Confidence 766654
No 369
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=55.15 E-value=1.1e+02 Score=24.56 Aligned_cols=66 Identities=12% Similarity=0.091 Sum_probs=44.7
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHHHh
Q 044790 23 IDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVWRK 98 (162)
Q Consensus 23 ~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 98 (162)
.|++++-.. ...-|..+++.+. ..+|||....... .+.+..|..+++..|-+.++|...|.+++..
T Consensus 303 ad~~v~ps~-~E~~g~~~lEAma-----~G~Pvi~~~~~~~----~e~i~~~~~g~~~~~~d~~~la~~i~~~l~~ 368 (405)
T TIGR03449 303 ADVVAVPSY-NESFGLVAMEAQA-----CGTPVVAARVGGL----PVAVADGETGLLVDGHDPADWADALARLLDD 368 (405)
T ss_pred CCEEEECCC-CCCcChHHHHHHH-----cCCCEEEecCCCc----HhhhccCCceEECCCCCHHHHHHHHHHHHhC
Confidence 466655433 2334566667664 4789986554332 2345678889999999999999999988763
No 370
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=55.12 E-value=1e+02 Score=24.32 Aligned_cols=85 Identities=20% Similarity=0.185 Sum_probs=57.0
Q ss_pred EcCHHHHHHHHHhhCCCccEEEEcCCC--------CCCCHHHHHHHHHccCCCCCCcEEEEecCC-CHHHHHHHHHcCCc
Q 044790 6 VENGLQAWKILEDLMDQIDLVLTEVLM--------PCLSGIGLLRKIMNHKTCKNIPVIMMSSHD-SMSIVFKCLSKGAV 76 (162)
Q Consensus 6 a~~~~eal~~l~~~~~~~DlvllD~~m--------p~~~g~~~~~~ir~~~~~~~~piI~lt~~~-~~~~~~~a~~~Ga~ 76 (162)
.+++++|.+++++ ..+|.+=+.+-- |..+ |++++.|++. ..+|+++=.+.. ..+.+.++.+.|+.
T Consensus 154 ~T~peeA~~Fv~~--TgvD~LAvaiGt~HG~y~~~p~Ld-~~~L~~I~~~---~~iPLVlHGgSG~~~e~~~kai~~Gi~ 227 (284)
T PRK12737 154 YTNPDAAAEFVER--TGIDSLAVAIGTAHGLYKGEPKLD-FERLAEIREK---VSIPLVLHGASGVPDEDVKKAISLGIC 227 (284)
T ss_pred CCCHHHHHHHHHH--hCCCEEeeccCccccccCCCCcCC-HHHHHHHHHH---hCCCEEEeCCCCCCHHHHHHHHHCCCe
Confidence 6789999999999 889988877721 3333 7789999775 368887766544 56667889999987
Q ss_pred eEEeCCCCHHHHHHHHHHHH
Q 044790 77 YFLVKPIRKNELQNLWQHVW 96 (162)
Q Consensus 77 ~~l~KP~~~~~L~~~i~~~l 96 (162)
.+=.-..-.......+++.+
T Consensus 228 KiNi~T~l~~a~~~~~~~~~ 247 (284)
T PRK12737 228 KVNVATELKIAFSDAVKKYF 247 (284)
T ss_pred EEEeCcHHHHHHHHHHHHHH
Confidence 66333222223334444444
No 371
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=55.09 E-value=1.1e+02 Score=24.38 Aligned_cols=65 Identities=18% Similarity=0.105 Sum_probs=45.5
Q ss_pred HHHHHHHHhhCCCccEEEEcCCC-----CCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHH-HcCCceEE
Q 044790 10 LQAWKILEDLMDQIDLVLTEVLM-----PCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCL-SKGAVYFL 79 (162)
Q Consensus 10 ~eal~~l~~~~~~~DlvllD~~m-----p~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~-~~Ga~~~l 79 (162)
.+..+.+++ ...|.|.+.-.. ++..-++.++.|++. ..+|||....-...+.+.+++ ..|++.+.
T Consensus 150 ~~~a~~l~~--~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~---~~ipvi~nGgI~~~~da~~~l~~~gad~Vm 220 (319)
T TIGR00737 150 VEAARIAED--AGAQAVTLHGRTRAQGYSGEANWDIIARVKQA---VRIPVIGNGDIFSPEDAKAMLETTGCDGVM 220 (319)
T ss_pred HHHHHHHHH--hCCCEEEEEcccccccCCCchhHHHHHHHHHc---CCCcEEEeCCCCCHHHHHHHHHhhCCCEEE
Confidence 344555666 568888764322 122237778888765 359999999999999999999 46888663
No 372
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=55.04 E-value=1.2e+02 Score=25.65 Aligned_cols=74 Identities=15% Similarity=0.164 Sum_probs=41.4
Q ss_pred cCHHHHHHHHHhhCCCccEEEEcCCCCCCC--HHHHHHHHHc----cC-CCCCCcEEEEecCCCHHHHHHHHH----cCC
Q 044790 7 ENGLQAWKILEDLMDQIDLVLTEVLMPCLS--GIGLLRKIMN----HK-TCKNIPVIMMSSHDSMSIVFKCLS----KGA 75 (162)
Q Consensus 7 ~~~~eal~~l~~~~~~~DlvllD~~mp~~~--g~~~~~~ir~----~~-~~~~~piI~lt~~~~~~~~~~a~~----~Ga 75 (162)
.+..++.+.+.. ..+|+||+|. ++.. -.+.++.+.. .. ..+.-.++++++.........++. .|+
T Consensus 286 ~~~~~l~~~l~~--~~~D~VLIDT--aGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f~~~~~ 361 (432)
T PRK12724 286 KDIKKFKETLAR--DGSELILIDT--AGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYESLNY 361 (432)
T ss_pred HHHHHHHHHHHh--CCCCEEEEeC--CCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHhcCCCC
Confidence 345566666665 6899999997 3321 1233333322 11 113345788888776655555543 578
Q ss_pred ceEEeCCCC
Q 044790 76 VYFLVKPIR 84 (162)
Q Consensus 76 ~~~l~KP~~ 84 (162)
+++|.-=++
T Consensus 362 ~glIlTKLD 370 (432)
T PRK12724 362 RRILLTKLD 370 (432)
T ss_pred CEEEEEccc
Confidence 887544333
No 373
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=54.93 E-value=1.2e+02 Score=24.83 Aligned_cols=70 Identities=17% Similarity=0.254 Sum_probs=43.5
Q ss_pred CCccEEEEcCCCCCCCHHH-HHHHHHccCCCCCCcEEEEec-CCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHH
Q 044790 21 DQIDLVLTEVLMPCLSGIG-LLRKIMNHKTCKNIPVIMMSS-HDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHV 95 (162)
Q Consensus 21 ~~~DlvllD~~mp~~~g~~-~~~~ir~~~~~~~~piI~lt~-~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~ 95 (162)
...+.+|++..-+..=-+| ++..+ . ....|+.... ..+.......++.|+++.+.+|-++.++.+....+
T Consensus 87 ~~~~~viv~~~dW~iIPlEnlIA~~-~----~~~~l~a~v~~~~eA~~a~~~LE~G~dGVvl~~~d~~ei~~~~~~~ 158 (344)
T PRK02290 87 KEVDYVIVEGRDWTIIPLENLIADL-G----QSGKIIAGVADAEEAKLALEILEKGVDGVLLDPDDPNEIKAIVALI 158 (344)
T ss_pred ccCCEEEEECCCCcEecHHHHHhhh-c----CCceEEEEeCCHHHHHHHHHHhccCCCeEEECCCCHHHHHHHHHHH
Confidence 3447777765543332233 33444 2 2344444443 33555566777899999999999999998776654
No 374
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=54.93 E-value=89 Score=25.08 Aligned_cols=72 Identities=15% Similarity=0.120 Sum_probs=43.8
Q ss_pred EcCHHHHHHHHHhhCCCccEEEEcCCC-----------CCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcC
Q 044790 6 VENGLQAWKILEDLMDQIDLVLTEVLM-----------PCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKG 74 (162)
Q Consensus 6 a~~~~eal~~l~~~~~~~DlvllD~~m-----------p~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~G 74 (162)
+.+.+.|..+++ ...|.|.+.+.- .+..-+.++..+........+|||.--.-.....+.+++.+|
T Consensus 143 v~t~~~A~~l~~---aGaD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kAla~G 219 (325)
T cd00381 143 VVTAEAARDLID---AGADGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAARDYGVPVIADGGIRTSGDIVKALAAG 219 (325)
T ss_pred CCCHHHHHHHHh---cCCCEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHcC
Confidence 455666655554 467888763210 011223344444332111368988777777889999999999
Q ss_pred CceEEe
Q 044790 75 AVYFLV 80 (162)
Q Consensus 75 a~~~l~ 80 (162)
|+....
T Consensus 220 A~~Vmi 225 (325)
T cd00381 220 ADAVML 225 (325)
T ss_pred CCEEEe
Confidence 998865
No 375
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=54.67 E-value=1e+02 Score=24.09 Aligned_cols=65 Identities=17% Similarity=0.176 Sum_probs=43.9
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHHH
Q 044790 23 IDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVWR 97 (162)
Q Consensus 23 ~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 97 (162)
.|++++=.. .+.-|..+++.+. ..+|+|..... ...+.+..|..+|+.+|-+.++|...|..++.
T Consensus 271 ~d~~v~ps~-~E~~~~~~~EAma-----~g~PvI~s~~~----~~~e~i~~~~~G~~~~~~~~~~l~~~i~~l~~ 335 (371)
T cd04962 271 ADLFLLPSE-KESFGLAALEAMA-----CGVPVVASNAG----GIPEVVKHGETGFLVDVGDVEAMAEYALSLLE 335 (371)
T ss_pred cCEEEeCCC-cCCCccHHHHHHH-----cCCCEEEeCCC----CchhhhcCCCceEEcCCCCHHHHHHHHHHHHh
Confidence 466665433 2334566666664 46888864332 23455677889999999999999999988764
No 376
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=54.58 E-value=1e+02 Score=23.97 Aligned_cols=62 Identities=11% Similarity=0.080 Sum_probs=25.9
Q ss_pred HHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEE
Q 044790 11 QAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFL 79 (162)
Q Consensus 11 eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l 79 (162)
..++.+.+ ..+|=+|+ ..||--..-++...+++ ..+..|++.+...+..+.+.+..-..+||
T Consensus 108 ~f~~~~~~--aGvdGvii-pDLp~ee~~~~~~~~~~----~gl~~I~lvap~t~~eri~~i~~~s~gfI 169 (258)
T PRK13111 108 RFAADAAE--AGVDGLII-PDLPPEEAEELRAAAKK----HGLDLIFLVAPTTTDERLKKIASHASGFV 169 (258)
T ss_pred HHHHHHHH--cCCcEEEE-CCCCHHHHHHHHHHHHH----cCCcEEEEeCCCCCHHHHHHHHHhCCCcE
Confidence 34455554 45554444 12332233334444444 24444443333333333343433344444
No 377
>PRK06801 hypothetical protein; Provisional
Probab=54.47 E-value=1.1e+02 Score=24.27 Aligned_cols=53 Identities=21% Similarity=0.367 Sum_probs=42.1
Q ss_pred CCCcEEEEecCC-CHHHHHHHHHcCCceEEe--CCCCHHHHHHHHHHHHHhccCCC
Q 044790 51 KNIPVIMMSSHD-SMSIVFKCLSKGAVYFLV--KPIRKNELQNLWQHVWRKCHSSS 103 (162)
Q Consensus 51 ~~~piI~lt~~~-~~~~~~~a~~~Ga~~~l~--KP~~~~~L~~~i~~~l~~~~~~~ 103 (162)
..+||.+=-.+. ..+.+.+|++.|+.-+.. |..+.++..+..+++....+...
T Consensus 73 ~~vpV~lHlDH~~~~e~i~~Ai~~GftSVm~D~S~l~~eeNi~~t~~v~~~a~~~g 128 (286)
T PRK06801 73 HDIPVVLNLDHGLHFEAVVRALRLGFSSVMFDGSTLEYEENVRQTREVVKMCHAVG 128 (286)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHhCCcEEEEcCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 588988888776 678899999999998877 67787888888887777665443
No 378
>KOG1601 consensus GATA-4/5/6 transcription factors [Transcription]
Probab=54.11 E-value=4 Score=30.99 Aligned_cols=64 Identities=33% Similarity=0.334 Sum_probs=47.6
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCC
Q 044790 21 DQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIR 84 (162)
Q Consensus 21 ~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~ 84 (162)
..+|+++-+..||.+.++.++..+.........+++++............+..++.+|+.+|..
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 125 (340)
T KOG1601|consen 62 FSIDLSVPSLDMPGLEGFSLFVSENNPNSLRHPPVPSMPSSNSSSSSSSSVSPSASLELTKPDR 125 (340)
T ss_pred ccccccccccccccccccccccccccCCCCCCCCcccccccccchhhhcccCCccccccccccc
Confidence 3579999999999999999988886544445666666665555554566677778899999987
No 379
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=54.03 E-value=33 Score=29.80 Aligned_cols=51 Identities=10% Similarity=0.218 Sum_probs=37.7
Q ss_pred HHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHH
Q 044790 39 GLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQH 94 (162)
Q Consensus 39 ~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~ 94 (162)
|-..+||+ -.+..||+|..+......-+.++|+|+||.-- .+++=++.|++
T Consensus 454 ERf~elR~----MgIkTvM~TGDN~~TAa~IA~EAGVDdfiAea-tPEdK~~~I~~ 504 (681)
T COG2216 454 ERFAELRK----MGIKTVMITGDNPLTAAAIAAEAGVDDFIAEA-TPEDKLALIRQ 504 (681)
T ss_pred HHHHHHHh----cCCeEEEEeCCCHHHHHHHHHHhCchhhhhcC-ChHHHHHHHHH
Confidence 44566766 47899999999988888889999999998642 33444444443
No 380
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=54.00 E-value=37 Score=26.63 Aligned_cols=39 Identities=18% Similarity=0.297 Sum_probs=28.7
Q ss_pred CCccEEEEcCC-------CCCCCHHHHHHHHHccCCCCCCcEEEEecCCC
Q 044790 21 DQIDLVLTEVL-------MPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDS 63 (162)
Q Consensus 21 ~~~DlvllD~~-------mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~ 63 (162)
..+|.+|+|+. -+-....++++.|++ ..+|++++|.+..
T Consensus 6 ~~y~~~l~DlDGvl~~G~~~ipga~e~l~~L~~----~g~~~iflTNn~~ 51 (269)
T COG0647 6 DKYDGFLFDLDGVLYRGNEAIPGAAEALKRLKA----AGKPVIFLTNNST 51 (269)
T ss_pred hhcCEEEEcCcCceEeCCccCchHHHHHHHHHH----cCCeEEEEeCCCC
Confidence 46899999974 122345778888877 4689999997663
No 381
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=53.97 E-value=93 Score=24.14 Aligned_cols=70 Identities=24% Similarity=0.298 Sum_probs=52.9
Q ss_pred EEcCHHHHHHHHHhhCCCccEEEEcCCCC-CCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEE
Q 044790 5 AVENGLQAWKILEDLMDQIDLVLTEVLMP-CLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFL 79 (162)
Q Consensus 5 ~a~~~~eal~~l~~~~~~~DlvllD~~mp-~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l 79 (162)
.+.+..+|++.+.+ ..++=||..=.-+ -.+|++.++.+.+.. .. .+|+..+--..+.+......|+..|-
T Consensus 126 ~~~d~~~al~~l~~--lG~~rILTSGg~~~a~~g~~~L~~lv~~a--~~-~~Im~GgGV~~~Nv~~l~~tG~~~~H 196 (248)
T PRK11572 126 MCANPLNALKQLAD--LGVARILTSGQQQDAEQGLSLIMELIAAS--DG-PIIMAGAGVRLSNLHKFLDAGVREVH 196 (248)
T ss_pred ccCCHHHHHHHHHH--cCCCEEECCCCCCCHHHHHHHHHHHHHhc--CC-CEEEeCCCCCHHHHHHHHHcCCCEEe
Confidence 45688999999998 7899998765444 468888888887654 23 45777777778887777788988885
No 382
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=53.81 E-value=1e+02 Score=24.41 Aligned_cols=56 Identities=18% Similarity=0.103 Sum_probs=40.5
Q ss_pred HHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHHHhcc
Q 044790 37 GIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVWRKCH 100 (162)
Q Consensus 37 g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~~~ 100 (162)
|..+++.+. ..+|||..-.... ..+.+..|..+++..|.+.++|...|..++....
T Consensus 271 ~~~~lEAma-----~G~Pvv~s~~~~g---~~eiv~~~~~G~lv~~~d~~~la~~i~~l~~~~~ 326 (359)
T PRK09922 271 PMTLLEAMS-----YGIPCISSDCMSG---PRDIIKPGLNGELYTPGNIDEFVGKLNKVISGEV 326 (359)
T ss_pred ChHHHHHHH-----cCCCEEEeCCCCC---hHHHccCCCceEEECCCCHHHHHHHHHHHHhCcc
Confidence 566666664 4788875431222 2345667889999999999999999999887653
No 383
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=53.73 E-value=1.3e+02 Score=24.94 Aligned_cols=63 Identities=8% Similarity=0.079 Sum_probs=44.5
Q ss_pred HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceE------Ee-CCCCHHHHHHHHHHHHHhcc
Q 044790 38 IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYF------LV-KPIRKNELQNLWQHVWRKCH 100 (162)
Q Consensus 38 ~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~------l~-KP~~~~~L~~~i~~~l~~~~ 100 (162)
++.++++++......+|||-...-...+++.+.+.+||+.. +. -|.-...|..-|...+.+..
T Consensus 239 l~~v~~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqi~ta~~~~gp~ii~~I~~~L~~~l~~~g 308 (420)
T PRK08318 239 LNMVAEIARDPETRGLPISGIGGIETWRDAAEFILLGAGTVQVCTAAMQYGFRIVEDMISGLSHYMDEKG 308 (420)
T ss_pred HHHHHHHHhccccCCCCEEeecCcCCHHHHHHHHHhCCChheeeeeeccCCchhHHHHHHHHHHHHHHcC
Confidence 45556665432113799999999999999999999999854 33 25556677777777776654
No 384
>COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=53.69 E-value=43 Score=26.36 Aligned_cols=59 Identities=20% Similarity=0.173 Sum_probs=39.5
Q ss_pred CCccEEEEcCCCCC---CCHHHHHHHHHccCCCCCCcEEEEecCCCHHH----HHHHHHcCCceEEeC
Q 044790 21 DQIDLVLTEVLMPC---LSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSI----VFKCLSKGAVYFLVK 81 (162)
Q Consensus 21 ~~~DlvllD~~mp~---~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~----~~~a~~~Ga~~~l~K 81 (162)
...|++= +.||. ..--+++..++......++|.|++++..+... +.-|++.||.++|.=
T Consensus 198 ~GadvlK--vevPvyveGe~~ea~~~f~~~~~~~~lP~i~LSAGV~~klF~~tv~fA~eaGAsGvL~G 263 (306)
T COG3684 198 SGADVLK--VEVPVYVEGEQEEAAAAFQRQNDHINLPWIYLSAGVSAKLFQRTVRFAMEAGASGVLAG 263 (306)
T ss_pred CCCceEE--eecceeccCccHHHHHHHHHhhcCCCCCeEEEecCccHHHhHHHHHHHHHcCCceeEec
Confidence 3455544 44554 12346777777655446899999999876554 455778999999864
No 385
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=53.66 E-value=1.1e+02 Score=24.36 Aligned_cols=66 Identities=17% Similarity=0.119 Sum_probs=46.6
Q ss_pred HHHHHHHHHhhCCCccEEEEcCCC-C----CCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHH-cCCceEE
Q 044790 9 GLQAWKILEDLMDQIDLVLTEVLM-P----CLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLS-KGAVYFL 79 (162)
Q Consensus 9 ~~eal~~l~~~~~~~DlvllD~~m-p----~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~-~Ga~~~l 79 (162)
..+..+.+.+ ...|.|.+.-.. + +...++.++++++. ..+|||....-.+.+.+.++++ .|+++..
T Consensus 151 ~~~~a~~le~--~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~---~~iPVI~nGgI~s~~da~~~l~~~gadgVm 222 (321)
T PRK10415 151 CVEIAQLAED--CGIQALTIHGRTRACLFNGEAEYDSIRAVKQK---VSIPVIANGDITDPLKARAVLDYTGADALM 222 (321)
T ss_pred HHHHHHHHHH--hCCCEEEEecCccccccCCCcChHHHHHHHHh---cCCcEEEeCCCCCHHHHHHHHhccCCCEEE
Confidence 3444555666 567877654322 2 22348888888875 4799999998889999999997 5898774
No 386
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=53.61 E-value=68 Score=24.34 Aligned_cols=74 Identities=14% Similarity=0.144 Sum_probs=45.3
Q ss_pred CccEEEEcCCCCCCCHHHHH----HHH---HccCCCCC-CcEEEEecCCCHHHHHHHHHcCCceEE-----eCCCCHHHH
Q 044790 22 QIDLVLTEVLMPCLSGIGLL----RKI---MNHKTCKN-IPVIMMSSHDSMSIVFKCLSKGAVYFL-----VKPIRKNEL 88 (162)
Q Consensus 22 ~~DlvllD~~mp~~~g~~~~----~~i---r~~~~~~~-~piI~lt~~~~~~~~~~a~~~Ga~~~l-----~KP~~~~~L 88 (162)
..|+|++=..-||..|..++ ++| |+...... -..|-+.+.-..+.+..+.++||+-|+ .+.-++.+.
T Consensus 132 ~vD~VlvMtV~PGf~GQ~fi~~~l~KI~~l~~~~~~~~~~~~IeVDGGI~~eti~~l~~aGaDi~V~GSaiF~~~d~~~~ 211 (223)
T PRK08745 132 ELDLVLVMSVNPGFGGQAFIPSALDKLRAIRKKIDALGKPIRLEIDGGVKADNIGAIAAAGADTFVAGSAIFNAPDYAQV 211 (223)
T ss_pred hcCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCeeEEEECCCCHHHHHHHHHcCCCEEEEChhhhCCCCHHHH
Confidence 46777766667888776653 233 33210011 135667777888999999999999664 444445555
Q ss_pred HHHHHHH
Q 044790 89 QNLWQHV 95 (162)
Q Consensus 89 ~~~i~~~ 95 (162)
...++..
T Consensus 212 ~~~lr~~ 218 (223)
T PRK08745 212 IAQMRAA 218 (223)
T ss_pred HHHHHHH
Confidence 5555543
No 387
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=53.49 E-value=88 Score=24.79 Aligned_cols=73 Identities=10% Similarity=0.116 Sum_probs=42.2
Q ss_pred ccEEEEcC--CCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 044790 23 IDLVLTEV--LMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVWRKC 99 (162)
Q Consensus 23 ~DlvllD~--~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~~ 99 (162)
.-+||+|- .|....--.+++.+...+ ..+.+|+++ .+.......+..-+.-+-.+|.+.+++...|...+...
T Consensus 118 ~~vviidea~~l~~~~~~~Ll~~le~~~--~~~~lIl~~--~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~ 192 (355)
T TIGR02397 118 YKVYIIDEVHMLSKSAFNALLKTLEEPP--EHVVFILAT--TEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKE 192 (355)
T ss_pred ceEEEEeChhhcCHHHHHHHHHHHhCCc--cceeEEEEe--CCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHc
Confidence 35888874 122111122344443222 344444444 23444455555556677778999999999999887764
No 388
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=53.43 E-value=91 Score=24.77 Aligned_cols=68 Identities=19% Similarity=0.053 Sum_probs=42.0
Q ss_pred HHHHHHHHHhhCCCccEEEEcCCCCC--CCHHHHHHHHHccC---CCCCCcEEEEecCCCHHHHHHHHHcCCceE
Q 044790 9 GLQAWKILEDLMDQIDLVLTEVLMPC--LSGIGLLRKIMNHK---TCKNIPVIMMSSHDSMSIVFKCLSKGAVYF 78 (162)
Q Consensus 9 ~~eal~~l~~~~~~~DlvllD~~mp~--~~g~~~~~~ir~~~---~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~ 78 (162)
..+|++.++.....+|+|.+|- |.. .+..+.++++++.- ..+.+ .|.+|+.-+.+.+....+.|+|-|
T Consensus 198 v~eal~~~~~~~~~~d~I~lDn-~~~~~G~~~~~~~~~~~~l~~~g~~~~-~ieaSGgI~~~~i~~~a~~gvD~i 270 (302)
T cd01571 198 KEEALKAAKALGDKLDGVRLDT-PSSRRGVFRYLIREVRWALDIRGYKHV-KIFVSGGLDEEDIKELEDVGVDAF 270 (302)
T ss_pred hHHHHHHHHHhCCCCcEEEECC-CCCCCCCHHHHHHHHHHHHHhCCCCCe-EEEEeCCCCHHHHHHHHHcCCCEE
Confidence 3478887765212589999994 321 12344444444311 11334 577777888888888888997766
No 389
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=53.36 E-value=1.4e+02 Score=25.26 Aligned_cols=93 Identities=10% Similarity=0.086 Sum_probs=62.4
Q ss_pred EEcCHHHHHHHHHhhCCCccEEEEcCCCC--------CCCHHHHHHHHHccCC------CCCCcEEEEecCCCHHHHHHH
Q 044790 5 AVENGLQAWKILEDLMDQIDLVLTEVLMP--------CLSGIGLLRKIMNHKT------CKNIPVIMMSSHDSMSIVFKC 70 (162)
Q Consensus 5 ~a~~~~eal~~l~~~~~~~DlvllD~~mp--------~~~g~~~~~~ir~~~~------~~~~piI~lt~~~~~~~~~~a 70 (162)
.+++..|+.+... ..+|.|.+.-..| ..-|++.++++++.-. ...+||+.+.+- ..+.+..+
T Consensus 306 StHs~eEl~~A~~---~gaDYI~lGPIFpT~TK~~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAIGGI-~~~Ni~~v 381 (437)
T PRK12290 306 STHGYYELLRIVQ---IQPSYIALGHIFPTTTKQMPSKPQGLVRLALYQKLIDTIPYQGQTGFPTVAIGGI-DQSNAEQV 381 (437)
T ss_pred ecCCHHHHHHHhh---cCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHHhhhccccccCCCCEEEECCc-CHHHHHHH
Confidence 5667777766554 4789999875432 1247777776654321 126899999875 66777889
Q ss_pred HHcCCceE-----EeCCCCHHHHHHHHHHHHHhccC
Q 044790 71 LSKGAVYF-----LVKPIRKNELQNLWQHVWRKCHS 101 (162)
Q Consensus 71 ~~~Ga~~~-----l~KP~~~~~L~~~i~~~l~~~~~ 101 (162)
++.|++++ |.+.-++.+-...+++.+.....
T Consensus 382 l~aGa~GVAVVSAI~~A~DP~aa~~~l~~~~~~~~~ 417 (437)
T PRK12290 382 WQCGVSSLAVVRAITLAEDPQLVIEFFDQVMAENQL 417 (437)
T ss_pred HHcCCCEEEEehHhhcCCCHHHHHHHHHHHHhhcCC
Confidence 99999987 34555667766777766665543
No 390
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=53.32 E-value=1e+02 Score=24.96 Aligned_cols=66 Identities=18% Similarity=0.244 Sum_probs=41.1
Q ss_pred HHHHHHHHhhCCCccEEEEcC---CCCC--CCH--HHHHHHHHccCCCCCCcEEEEecCCCH------HHHHHHHHcCCc
Q 044790 10 LQAWKILEDLMDQIDLVLTEV---LMPC--LSG--IGLLRKIMNHKTCKNIPVIMMSSHDSM------SIVFKCLSKGAV 76 (162)
Q Consensus 10 ~eal~~l~~~~~~~DlvllD~---~mp~--~~g--~~~~~~ir~~~~~~~~piI~lt~~~~~------~~~~~a~~~Ga~ 76 (162)
..|.+.+... ...+++||.. .-+. ..- +..+..+++. .++|||+.+++... .....|..+||+
T Consensus 217 l~A~e~i~~~-GN~~viL~erG~~tf~~~~~~~ldl~ai~~lk~~---~~lPVi~d~sH~~G~~~~v~~~a~AAvA~GAd 292 (335)
T PRK08673 217 LMAAEYILAE-GNPNVILCERGIRTFETATRNTLDLSAVPVIKKL---THLPVIVDPSHATGKRDLVEPLALAAVAAGAD 292 (335)
T ss_pred HHHHHHHHHc-CCCeEEEEECCCCCCCCcChhhhhHHHHHHHHHh---cCCCEEEeCCCCCccccchHHHHHHHHHhCCC
Confidence 4456666542 4578999975 2221 222 2334555543 47999998877644 456778889999
Q ss_pred eEE
Q 044790 77 YFL 79 (162)
Q Consensus 77 ~~l 79 (162)
+++
T Consensus 293 Gli 295 (335)
T PRK08673 293 GLI 295 (335)
T ss_pred EEE
Confidence 764
No 391
>cd08572 GDPD_GDE5_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. GDE5 is widely expressed in mammalian tissues, with highest expression in spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=53.08 E-value=82 Score=24.76 Aligned_cols=30 Identities=10% Similarity=-0.011 Sum_probs=23.2
Q ss_pred CCCcEEEEecC-CCHHHHHHHHHcCCceEEe
Q 044790 51 KNIPVIMMSSH-DSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 51 ~~~piI~lt~~-~~~~~~~~a~~~Ga~~~l~ 80 (162)
..++|.+.|.. ++++.+...++.|++++++
T Consensus 260 ~Gl~v~~wTv~~n~~~~~~~l~~~GVdgIiT 290 (293)
T cd08572 260 LGLVLFTYGDDNNDPENVKKQKELGVDGVIY 290 (293)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHcCCCEEEe
Confidence 46778877773 5677788888999999875
No 392
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=53.01 E-value=98 Score=23.41 Aligned_cols=85 Identities=12% Similarity=0.084 Sum_probs=56.3
Q ss_pred cCHHHHHHHHHhhCCCccEEEEcCCCCC--CCHHHHHHHHHccCCCCCCcEEEE-----ecCCCHHHHHHHHHcCCceEE
Q 044790 7 ENGLQAWKILEDLMDQIDLVLTEVLMPC--LSGIGLLRKIMNHKTCKNIPVIMM-----SSHDSMSIVFKCLSKGAVYFL 79 (162)
Q Consensus 7 ~~~~eal~~l~~~~~~~DlvllD~~mp~--~~g~~~~~~ir~~~~~~~~piI~l-----t~~~~~~~~~~a~~~Ga~~~l 79 (162)
.+..++++.+.+ ...+++.+|+.++- ..|.++++.|++.. .+|++= ........+..+.+.|++-+.
T Consensus 12 ~~~~~~l~~~~~--~~~~~~~ikvg~~~f~~~G~~~i~~l~~~~----~~i~~D~Kl~Di~~t~~~~i~~~~~~gad~it 85 (230)
T PRK00230 12 PSKEEALAFLDQ--LDPAVLFVKVGMELFTAGGPQFVRELKQRG----FKVFLDLKLHDIPNTVAKAVRALAKLGVDMVN 85 (230)
T ss_pred CCHHHHHHHHHh--cCCcccEEEEcHHHHHhcCHHHHHHHHhcC----CCEEEEeehhhccccHHHHHHHHHHcCCCEEE
Confidence 357889999988 67788888887764 35678888998642 222211 111233445567889999988
Q ss_pred eCCCCHHHHHHHHHHHHH
Q 044790 80 VKPIRKNELQNLWQHVWR 97 (162)
Q Consensus 80 ~KP~~~~~L~~~i~~~l~ 97 (162)
.-+..-.+.++...+..+
T Consensus 86 vH~~ag~~~i~~~~~~~~ 103 (230)
T PRK00230 86 VHASGGPRMMKAAREALE 103 (230)
T ss_pred EcccCCHHHHHHHHHHhh
Confidence 888777666666665544
No 393
>TIGR01588 citE citrate lyase, beta subunit. This is a model of the beta subunit of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The beta subunit catalyzes the reaction (3S)-citryl-CoA = acetyl-CoA + oxaloacetate. The seed contains an experimentally characterized member from Leuconostoc mesenteroides. The model covers a wide range of Gram positive bacteria. For Gram negative bacteria, it appears that only gamma proteobacteria hit this model. The model is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in-between the noise cutoff and trusted cutoff.
Probab=52.96 E-value=1.1e+02 Score=24.01 Aligned_cols=79 Identities=8% Similarity=-0.036 Sum_probs=45.4
Q ss_pred HHHHHHhhCCCccEEEEcCCCCCC--CHHH----HHHHHHccCCCCCCcEEEEecCCCH----HHHHHHHHcCCceE-Ee
Q 044790 12 AWKILEDLMDQIDLVLTEVLMPCL--SGIG----LLRKIMNHKTCKNIPVIMMSSHDSM----SIVFKCLSKGAVYF-LV 80 (162)
Q Consensus 12 al~~l~~~~~~~DlvllD~~mp~~--~g~~----~~~~ir~~~~~~~~piI~lt~~~~~----~~~~~a~~~Ga~~~-l~ 80 (162)
.++.... ..+|.|++|++-... +--+ +...|+... .....+++=....+. ..+...+..|++++ |+
T Consensus 16 ~~~ka~~--~gaD~vilDLEDav~~~~k~~AR~~v~~~l~~~~-~~~~~~~VRIn~~~~~~~~~di~~~l~~g~~givlP 92 (288)
T TIGR01588 16 MISDAFI--YGADSVMFDLEDAVSLAEKDSARLLVYEALQTPD-YGDTETVVRINGLDTPFGLADIKAVVKAGVDVVRLP 92 (288)
T ss_pred HHHhhhh--cCCCEEEEecccCCCcchHHHHHHHHHHHHhccC-CCCCEEEEEECCCCChhHHHHHHHHHhcCCCEEEeC
Confidence 3444444 579999999986443 3333 445554432 123333333332233 66788888999988 55
Q ss_pred CCCCHHHHHHHHH
Q 044790 81 KPIRKNELQNLWQ 93 (162)
Q Consensus 81 KP~~~~~L~~~i~ 93 (162)
|.-+.+++.....
T Consensus 93 Kv~s~~~v~~~~~ 105 (288)
T TIGR01588 93 KTDTAEDIHELEK 105 (288)
T ss_pred CCCCHHHHHHHHH
Confidence 6666666555543
No 394
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=52.94 E-value=1.2e+02 Score=24.38 Aligned_cols=64 Identities=6% Similarity=0.047 Sum_probs=43.5
Q ss_pred HHHHHHHhhCCCccEEEEcCC---CCCCC----------HHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCce
Q 044790 11 QAWKILEDLMDQIDLVLTEVL---MPCLS----------GIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVY 77 (162)
Q Consensus 11 eal~~l~~~~~~~DlvllD~~---mp~~~----------g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~ 77 (162)
+..+.+.+ ...|.|.+.-. +.+.+ .++.++++++.. +.+|||....-...+.+.++++ |+++
T Consensus 155 ~~~~~l~~--aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~--~~iPVI~nGgI~s~eda~~~l~-~aDg 229 (333)
T PRK11815 155 DFVDTVAE--AGCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDF--PHLTIEINGGIKTLEEAKEHLQ-HVDG 229 (333)
T ss_pred HHHHHHHH--hCCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhC--CCCeEEEECCcCCHHHHHHHHh-cCCE
Confidence 33455555 56888887532 11222 277888887642 5799999888888998888886 6886
Q ss_pred EE
Q 044790 78 FL 79 (162)
Q Consensus 78 ~l 79 (162)
.+
T Consensus 230 Vm 231 (333)
T PRK11815 230 VM 231 (333)
T ss_pred EE
Confidence 53
No 395
>PRK14974 cell division protein FtsY; Provisional
Probab=52.88 E-value=1.1e+02 Score=24.77 Aligned_cols=72 Identities=13% Similarity=0.117 Sum_probs=37.9
Q ss_pred HHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccC--CCCCCcEEEEecCCCHHHHHH--HH--HcCCceEEeCCCC
Q 044790 11 QAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHK--TCKNIPVIMMSSHDSMSIVFK--CL--SKGAVYFLVKPIR 84 (162)
Q Consensus 11 eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~--~~~~~piI~lt~~~~~~~~~~--a~--~~Ga~~~l~KP~~ 84 (162)
++++.... ..+|+||+|..=-...-..++..|+... ..++..++++.+....+.... .| ..+++++|.-=++
T Consensus 213 ~ai~~~~~--~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~~~~giIlTKlD 290 (336)
T PRK14974 213 DAIEHAKA--RGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVILTKVD 290 (336)
T ss_pred HHHHHHHh--CCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhcCCCCEEEEeeec
Confidence 45555555 6789999998421111233444433210 115666777776554444432 33 2588888544333
No 396
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=52.72 E-value=1e+02 Score=24.72 Aligned_cols=39 Identities=18% Similarity=0.286 Sum_probs=31.5
Q ss_pred HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEE
Q 044790 38 IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFL 79 (162)
Q Consensus 38 ~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l 79 (162)
++++++||+. -.+||++.......+.+.++++.|.-|++
T Consensus 281 ~~~~~~ik~~---v~iPVi~~G~i~t~~~a~~~l~~g~aD~V 319 (338)
T cd04733 281 LEFAEKIRKV---TKTPLMVTGGFRTRAAMEQALASGAVDGI 319 (338)
T ss_pred HHHHHHHHHH---cCCCEEEeCCCCCHHHHHHHHHcCCCCee
Confidence 4677888875 37899998888889999999999866664
No 397
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=52.59 E-value=34 Score=27.44 Aligned_cols=33 Identities=18% Similarity=0.363 Sum_probs=26.9
Q ss_pred EcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHH
Q 044790 6 VENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGL 40 (162)
Q Consensus 6 a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~ 40 (162)
..||...++.+.+ +++|+||+|+.-|.+.+-.+
T Consensus 181 iGDG~~fl~~~~~--~~~dVii~dssdpvgpa~~l 213 (337)
T KOG1562|consen 181 IGDGFLFLEDLKE--NPFDVIITDSSDPVGPACAL 213 (337)
T ss_pred eccHHHHHHHhcc--CCceEEEEecCCccchHHHH
Confidence 3488888888877 89999999998888887664
No 398
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=52.50 E-value=1.1e+02 Score=23.88 Aligned_cols=52 Identities=12% Similarity=0.115 Sum_probs=38.3
Q ss_pred HHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHH
Q 044790 40 LLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQH 94 (162)
Q Consensus 40 ~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~ 94 (162)
.++.+|+.- +.-.+|-++.+ ..+...+|.+.|+|-+..-|+.++.+...++.
T Consensus 167 av~~~r~~~--~~~~~Igvev~-t~eea~~A~~~gaDyI~ld~~~~e~lk~~v~~ 218 (265)
T TIGR00078 167 AVKRARAAA--PFALKIEVEVE-SLEEAEEAAEAGADIIMLDNMKPEEIKEAVQL 218 (265)
T ss_pred HHHHHHHhC--CCCCeEEEEeC-CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHH
Confidence 456777643 33334555554 56778899999999888999999998888875
No 399
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=52.43 E-value=82 Score=28.25 Aligned_cols=76 Identities=12% Similarity=0.225 Sum_probs=48.8
Q ss_pred CccEEEEc-CCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHHHhcc
Q 044790 22 QIDLVLTE-VLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVWRKCH 100 (162)
Q Consensus 22 ~~DlvllD-~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~~~ 100 (162)
++.++|+| ++|-...++..+.++-+.+. ..+.+|+++. +.......+..-+.-|-.||++.+++...|+.++....
T Consensus 118 k~KV~IIDEVh~LS~~A~NALLKtLEEPP-~~v~FILaTt--d~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEg 194 (702)
T PRK14960 118 RFKVYLIDEVHMLSTHSFNALLKTLEEPP-EHVKFLFATT--DPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQ 194 (702)
T ss_pred CcEEEEEechHhcCHHHHHHHHHHHhcCC-CCcEEEEEEC--ChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcC
Confidence 56789987 44444345554433333321 4566776663 33334444456678888999999999999999887753
No 400
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=52.38 E-value=53 Score=24.16 Aligned_cols=42 Identities=17% Similarity=0.322 Sum_probs=26.8
Q ss_pred HHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCC
Q 044790 13 WKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDS 63 (162)
Q Consensus 13 l~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~ 63 (162)
+|.+.. .+|||||..-.. ...+....+.+ ..+|++++.....
T Consensus 53 ~E~i~~--l~PDlIi~~~~~---~~~~~~~~~~~----~~ip~~~~~~~~~ 94 (238)
T PF01497_consen 53 LEAILA--LKPDLIIGSSFY---GQSEEIEKLLE----AGIPVVVFDSSSP 94 (238)
T ss_dssp HHHHHH--T--SEEEEETTS---SCHHHHHHHHH----TTSEEEEESSTTC
T ss_pred HHHHHh--CCCCEEEEeccc---cchHHHHHHhc----ccceEEEeecccc
Confidence 355555 689999987655 33445555544 5789999988764
No 401
>PLN02979 glycolate oxidase
Probab=52.34 E-value=42 Score=27.58 Aligned_cols=42 Identities=10% Similarity=0.061 Sum_probs=32.9
Q ss_pred HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCC
Q 044790 38 IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPI 83 (162)
Q Consensus 38 ~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~ 83 (162)
|+-+++||+. ..+|||+=-- ...+.+.++.+.|++.++.-..
T Consensus 212 W~dl~wlr~~---~~~PvivKgV-~~~~dA~~a~~~Gvd~I~Vsnh 253 (366)
T PLN02979 212 WKDVQWLQTI---TKLPILVKGV-LTGEDARIAIQAGAAGIIVSNH 253 (366)
T ss_pred HHHHHHHHhc---cCCCEEeecC-CCHHHHHHHHhcCCCEEEECCC
Confidence 5778889875 4788885444 5688899999999999988753
No 402
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=52.29 E-value=96 Score=23.11 Aligned_cols=75 Identities=16% Similarity=0.157 Sum_probs=54.3
Q ss_pred HHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCC--CHHHHHHHHHcCCceEEeCC-CCH
Q 044790 9 GLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHD--SMSIVFKCLSKGAVYFLVKP-IRK 85 (162)
Q Consensus 9 ~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~--~~~~~~~a~~~Ga~~~l~KP-~~~ 85 (162)
..+.++.+.+ ..+|-|++. -+.+++.+++.. ++++|++=+... +...+....+.|+..++.-| ++.
T Consensus 4 ~~~~l~~l~~--~g~dgi~v~-------~~g~~~~~k~~~--~~~~i~~~~~~nv~N~~s~~~~~~~G~~~i~ls~EL~~ 72 (233)
T PF01136_consen 4 LEKYLDKLKE--LGVDGILVS-------NPGLLELLKELG--PDLKIIADYSLNVFNSESARFLKELGASRITLSPELSL 72 (233)
T ss_pred HHHHHHHHHh--CCCCEEEEc-------CHHHHHHHHHhC--CCCcEEEecCccCCCHHHHHHHHHcCCCEEEECccCCH
Confidence 3456777777 789987775 367788888865 678877665433 66667777788999997776 777
Q ss_pred HHHHHHHHH
Q 044790 86 NELQNLWQH 94 (162)
Q Consensus 86 ~~L~~~i~~ 94 (162)
++|.+..+.
T Consensus 73 ~ei~~i~~~ 81 (233)
T PF01136_consen 73 EEIKEIAEN 81 (233)
T ss_pred HHHHHHHHh
Confidence 777776554
No 403
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=52.23 E-value=69 Score=23.59 Aligned_cols=68 Identities=18% Similarity=0.125 Sum_probs=36.4
Q ss_pred HHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHc---cCCCCCCcEEEEecCCCHHHHHHHH---H-cCCceE-EeC
Q 044790 11 QAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMN---HKTCKNIPVIMMSSHDSMSIVFKCL---S-KGAVYF-LVK 81 (162)
Q Consensus 11 eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~---~~~~~~~piI~lt~~~~~~~~~~a~---~-~Ga~~~-l~K 81 (162)
++++.... ..+|+||+|..=-...-.+.++++++ .. .+.-.++++++....+....+. + .+.+++ ++|
T Consensus 74 ~~l~~~~~--~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~-~~~~~~LVlsa~~~~~~~~~~~~~~~~~~~~~lIlTK 149 (196)
T PF00448_consen 74 EALEKFRK--KGYDLVLIDTAGRSPRDEELLEELKKLLEAL-NPDEVHLVLSATMGQEDLEQALAFYEAFGIDGLILTK 149 (196)
T ss_dssp HHHHHHHH--TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHH-SSSEEEEEEEGGGGGHHHHHHHHHHHHSSTCEEEEES
T ss_pred HHHHHHhh--cCCCEEEEecCCcchhhHHHHHHHHHHhhhc-CCccceEEEecccChHHHHHHHHHhhcccCceEEEEe
Confidence 45555555 67999999983211222333333332 21 1445577777766555543333 3 467777 455
No 404
>PRK14098 glycogen synthase; Provisional
Probab=52.18 E-value=1.4e+02 Score=25.28 Aligned_cols=69 Identities=7% Similarity=0.006 Sum_probs=40.7
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHHH
Q 044790 23 IDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVWR 97 (162)
Q Consensus 23 ~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 97 (162)
.|++++=.. ...-|+..++.++ ..+|+|+.......+.+......+..+|+..|.+.++|...|.+++.
T Consensus 382 aDi~l~PS~-~E~~Gl~~lEAma-----~G~ppVv~~~GGl~d~v~~~~~~~~~G~l~~~~d~~~la~ai~~~l~ 450 (489)
T PRK14098 382 LDMLLMPGK-IESCGMLQMFAMS-----YGTIPVAYAGGGIVETIEEVSEDKGSGFIFHDYTPEALVAKLGEALA 450 (489)
T ss_pred CCEEEeCCC-CCCchHHHHHHHh-----CCCCeEEecCCCCceeeecCCCCCCceeEeCCCCHHHHHHHHHHHHH
Confidence 466554322 2334555556654 35555554433333333222223678999999999999999988764
No 405
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=51.93 E-value=76 Score=25.41 Aligned_cols=73 Identities=16% Similarity=0.156 Sum_probs=45.6
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceE-EeCCCCH
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYF-LVKPIRK 85 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~-l~KP~~~ 85 (162)
+.++|++.++.. ..+++.++.--+|. +-++.++.|++. ..+||++--.........++++.|+-|+ -.||...
T Consensus 201 ~~~~a~~~~~~l-~~~~i~~iEqP~~~-~~~~~~~~l~~~---~~ipi~~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~ 274 (357)
T cd03316 201 DLAEAIRLARAL-EEYDLFWFEEPVPP-DDLEGLARLRQA---TSVPIAAGENLYTRWEFRDLLEAGAVDIIQPDVTKV 274 (357)
T ss_pred CHHHHHHHHHHh-CccCCCeEcCCCCc-cCHHHHHHHHHh---CCCCEEeccccccHHHHHHHHHhCCCCEEecCcccc
Confidence 456777777663 34555555544443 236667777765 3678776555557788888888775555 4666443
No 406
>PRK07413 hypothetical protein; Validated
Probab=51.66 E-value=76 Score=26.27 Aligned_cols=46 Identities=11% Similarity=0.219 Sum_probs=30.1
Q ss_pred CCccEEEEcCCC-----CCCCHHHHHHHHHccCCCCCCcEEEEecCC-CHHHHHH
Q 044790 21 DQIDLVLTEVLM-----PCLSGIGLLRKIMNHKTCKNIPVIMMSSHD-SMSIVFK 69 (162)
Q Consensus 21 ~~~DlvllD~~m-----p~~~g~~~~~~ir~~~~~~~~piI~lt~~~-~~~~~~~ 69 (162)
..+|+||+|=.+ .-.+--+++..|+..+ ..+-|| +|.+. .+....+
T Consensus 304 g~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp--~~~evV-LTGR~~ap~~lie 355 (382)
T PRK07413 304 GLYKTIILDELNPTVDLELLPVEPIVQTLLRKP--RDTEVI-ITGRCKNQPAYFD 355 (382)
T ss_pred CCCCEEEEechHHHHHCCCccHHHHHHHHHhCC--CCCEEE-EeCCCCCCHHHHH
Confidence 679999999543 3345567888888765 555555 77775 5444433
No 407
>PRK01362 putative translaldolase; Provisional
Probab=51.63 E-value=79 Score=23.86 Aligned_cols=49 Identities=16% Similarity=0.066 Sum_probs=33.2
Q ss_pred CCCCHHHHHHHHHccCCC--CCCcEEEEecCCCHHHHHHHHHcCCceEEeCC
Q 044790 33 PCLSGIGLLRKIMNHKTC--KNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKP 82 (162)
Q Consensus 33 p~~~g~~~~~~ir~~~~~--~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP 82 (162)
.+.+|+++++.++..-.. ..+ -|+..+..+...+.++...|++-+-..|
T Consensus 136 ~g~dg~~~i~~~~~~~~~~~~~t-kilaAS~r~~~~v~~~~~~G~d~iTi~~ 186 (214)
T PRK01362 136 IGTDGMELIEDIREIYDNYGFDT-EIIAASVRHPMHVLEAALAGADIATIPY 186 (214)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCc-EEEEeecCCHHHHHHHHHcCCCEEecCH
Confidence 477899988887652211 234 4445556688888999999999554443
No 408
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=51.61 E-value=85 Score=22.27 Aligned_cols=78 Identities=17% Similarity=0.118 Sum_probs=49.5
Q ss_pred HHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCC-CCcEEEEecCCC--------HHHHHHHHHcCCceEEe
Q 044790 10 LQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCK-NIPVIMMSSHDS--------MSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 10 ~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~-~~piI~lt~~~~--------~~~~~~a~~~Ga~~~l~ 80 (162)
...++.+.+ ..++.|++.- ++++.++.... . .+|+++-..... .+....+.+.|++..+.
T Consensus 16 ~~~~~~~~~--~gv~gi~~~g--------~~i~~~~~~~~-~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v 84 (201)
T cd00945 16 AKLCDEAIE--YGFAAVCVNP--------GYVRLAADALA-GSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDV 84 (201)
T ss_pred HHHHHHHHH--hCCcEEEECH--------HHHHHHHHHhC-CCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEE
Confidence 444555555 5688877763 66777665431 2 588777665443 35567788899999976
Q ss_pred C-CCC------HHHHHHHHHHHHHh
Q 044790 81 K-PIR------KNELQNLWQHVWRK 98 (162)
Q Consensus 81 K-P~~------~~~L~~~i~~~l~~ 98 (162)
- |+. .+.+.+.++.+...
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~i~~~ 109 (201)
T cd00945 85 VINIGSLKEGDWEEVLEEIAAVVEA 109 (201)
T ss_pred eccHHHHhCCCHHHHHHHHHHHHHH
Confidence 5 332 46666766666665
No 409
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=51.56 E-value=1.1e+02 Score=23.54 Aligned_cols=76 Identities=16% Similarity=0.217 Sum_probs=48.5
Q ss_pred HHHHHHHHhhCCCccEEEEcCCCC-----CCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCC
Q 044790 10 LQAWKILEDLMDQIDLVLTEVLMP-----CLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIR 84 (162)
Q Consensus 10 ~eal~~l~~~~~~~DlvllD~~mp-----~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~ 84 (162)
.+..+.+.. .|++|+=...+ ..-|..+++.+. ..+|+|..-. .. ..+.+..+..+++.++-+
T Consensus 247 ~~l~~~~~~----adi~l~~s~~~~~~~~e~~~~~~~Ea~a-----~G~Pvi~~~~-~~---~~~~i~~~~~g~~~~~~~ 313 (355)
T cd03799 247 EEVRELLRA----ADLFVLPSVTAADGDREGLPVVLMEAMA-----MGLPVISTDV-SG---IPELVEDGETGLLVPPGD 313 (355)
T ss_pred HHHHHHHHh----CCEEEecceecCCCCccCccHHHHHHHH-----cCCCEEecCC-CC---cchhhhCCCceEEeCCCC
Confidence 455555543 57766643331 223566666664 4788885332 22 234566677899999999
Q ss_pred HHHHHHHHHHHHHh
Q 044790 85 KNELQNLWQHVWRK 98 (162)
Q Consensus 85 ~~~L~~~i~~~l~~ 98 (162)
.++|.+.|..++..
T Consensus 314 ~~~l~~~i~~~~~~ 327 (355)
T cd03799 314 PEALADAIERLLDD 327 (355)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999988754
No 410
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=51.49 E-value=32 Score=26.73 Aligned_cols=40 Identities=23% Similarity=0.290 Sum_probs=25.8
Q ss_pred HHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecC
Q 044790 10 LQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSH 61 (162)
Q Consensus 10 ~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~ 61 (162)
.+.+++++. .+||+||.|...- .+...+. ..+|+|+++..
T Consensus 84 ~~~~~~l~~--~~pDlVIsD~~~~------~~~aa~~----~giP~i~i~~~ 123 (318)
T PF13528_consen 84 RREIRWLRE--FRPDLVISDFYPL------AALAARR----AGIPVIVISNQ 123 (318)
T ss_pred HHHHHHHHh--cCCCEEEEcChHH------HHHHHHh----cCCCEEEEEeh
Confidence 344566676 7899999996432 1222222 57999988864
No 411
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=51.40 E-value=1.3e+02 Score=24.32 Aligned_cols=68 Identities=12% Similarity=0.176 Sum_probs=50.0
Q ss_pred EcCHHHHHHHHHhhCCCccEEEEcCCC-------------CCCCHHHHHHHHHccCCCCCCcEEEEecCC----------
Q 044790 6 VENGLQAWKILEDLMDQIDLVLTEVLM-------------PCLSGIGLLRKIMNHKTCKNIPVIMMSSHD---------- 62 (162)
Q Consensus 6 a~~~~eal~~l~~~~~~~DlvllD~~m-------------p~~~g~~~~~~ir~~~~~~~~piI~lt~~~---------- 62 (162)
.++.++|.+++++ ..+|.+=+.+-- |.. -|++++.|++.- +.+|+++=.+..
T Consensus 163 ~T~peeA~~Fv~~--TgvD~LAvaiGt~HG~Y~~~~~~~~p~L-d~d~L~~I~~~~--~~vPLVLHGgSg~~~~~~~~~~ 237 (321)
T PRK07084 163 YTQPEEVEDFVKK--TGVDSLAISIGTSHGAYKFKPGQCPPPL-RFDILEEIEKRI--PGFPIVLHGSSSVPQEYVKTIN 237 (321)
T ss_pred cCCHHHHHHHHHH--hCCCEEeeccccccccccCCCCCCCCcc-CHHHHHHHHHhc--CCCCEEEeCCCCCcHHHHHHHH
Confidence 6789999999998 789988877621 222 278899998753 468988776652
Q ss_pred ------------CHHHHHHHHHcCCceE
Q 044790 63 ------------SMSIVFKCLSKGAVYF 78 (162)
Q Consensus 63 ------------~~~~~~~a~~~Ga~~~ 78 (162)
..+.+.+|.+.|+..+
T Consensus 238 ~~g~~~~~~~Gi~~e~~~kai~~GI~KI 265 (321)
T PRK07084 238 EYGGKLKDAIGIPEEQLRKAAKSAVCKI 265 (321)
T ss_pred HhcCccccCCCCCHHHHHHHHHcCCcee
Confidence 3467788888888765
No 412
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=51.22 E-value=79 Score=21.78 Aligned_cols=76 Identities=17% Similarity=0.177 Sum_probs=51.2
Q ss_pred HHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHH
Q 044790 10 LQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQ 89 (162)
Q Consensus 10 ~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~ 89 (162)
++..+++.. .|++++=... +.-|..+++.+. ..+|+|+.- .....+.+..+..+++..+.+.++|.
T Consensus 84 ~~l~~~~~~----~di~v~~s~~-e~~~~~~~Ea~~-----~g~pvI~~~----~~~~~e~~~~~~~g~~~~~~~~~~l~ 149 (172)
T PF00534_consen 84 DELDELYKS----SDIFVSPSRN-EGFGLSLLEAMA-----CGCPVIASD----IGGNNEIINDGVNGFLFDPNDIEELA 149 (172)
T ss_dssp HHHHHHHHH----TSEEEE-BSS-BSS-HHHHHHHH-----TT-EEEEES----STHHHHHSGTTTSEEEESTTSHHHHH
T ss_pred ccccccccc----ceeccccccc-cccccccccccc-----cccceeecc----ccCCceeeccccceEEeCCCCHHHHH
Confidence 355555554 5777765555 445567777764 467777433 23345667788899999999999999
Q ss_pred HHHHHHHHhc
Q 044790 90 NLWQHVWRKC 99 (162)
Q Consensus 90 ~~i~~~l~~~ 99 (162)
..|.+++...
T Consensus 150 ~~i~~~l~~~ 159 (172)
T PF00534_consen 150 DAIEKLLNDP 159 (172)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHCCH
Confidence 9999988764
No 413
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=51.11 E-value=41 Score=29.98 Aligned_cols=57 Identities=11% Similarity=0.155 Sum_probs=41.4
Q ss_pred CCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHH
Q 044790 33 PCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQH 94 (162)
Q Consensus 33 p~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~ 94 (162)
|..+--+.++++|+ ..+.++|+|+........-|.+.|+++|+.. ..+++=.+.|+.
T Consensus 442 ~R~~a~e~I~~Lr~----~GI~vvMiTGDn~~TA~aIA~elGI~~v~A~-~~PedK~~iV~~ 498 (673)
T PRK14010 442 IKDGLVERFRELRE----MGIETVMCTGDNELTAATIAKEAGVDRFVAE-CKPEDKINVIRE 498 (673)
T ss_pred CcHHHHHHHHHHHH----CCCeEEEECCCCHHHHHHHHHHcCCceEEcC-CCHHHHHHHHHH
Confidence 44555778888887 4688999999888888888999999998765 234443444443
No 414
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=51.06 E-value=1.1e+02 Score=24.18 Aligned_cols=69 Identities=10% Similarity=0.127 Sum_probs=45.8
Q ss_pred ccEEEEc-CCCCCCCH-HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHH
Q 044790 23 IDLVLTE-VLMPCLSG-IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQH 94 (162)
Q Consensus 23 ~DlvllD-~~mp~~~g-~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~ 94 (162)
+|.|++. -+.--..| .+.++.+|+.. +.-.+|-++.+ ..+.+.++.+.|+|-+...++.++.|...++.
T Consensus 158 ~d~vlikdnHi~~~g~~~~~v~~aR~~~--~~~~~Igvsv~-tleea~~A~~~gaDyI~lD~~~~e~l~~~~~~ 228 (277)
T PRK08072 158 YDGVMIKDNHIAFCGSITKAVTSVREKL--GHMVKIEVETE-TEEQVREAVAAGADIIMFDNRTPDEIREFVKL 228 (277)
T ss_pred CceEEEchhHHHhhCCHHHHHHHHHHhC--CCCCEEEEEeC-CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHh
Confidence 4556653 33222223 34556666643 33446777775 56778889999999999999999888887764
No 415
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=50.98 E-value=58 Score=23.39 Aligned_cols=70 Identities=14% Similarity=0.162 Sum_probs=41.7
Q ss_pred CccEEEEcC--CCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHH
Q 044790 22 QIDLVLTEV--LMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHV 95 (162)
Q Consensus 22 ~~DlvllD~--~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~ 95 (162)
.+-+||+|- .|.....-.+++.|...+ +.+.+|+++. ....+..++..-+.-+-.+|++.+++...|...
T Consensus 96 ~~kviiide~~~l~~~~~~~Ll~~le~~~--~~~~~il~~~--~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~ 167 (188)
T TIGR00678 96 GRRVVIIEDAERMNEAAANALLKTLEEPP--PNTLFILITP--SPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ 167 (188)
T ss_pred CeEEEEEechhhhCHHHHHHHHHHhcCCC--CCeEEEEEEC--ChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc
Confidence 356888873 122211223445554322 4455665554 335566667766778888899999998888764
No 416
>PLN02826 dihydroorotate dehydrogenase
Probab=50.96 E-value=43 Score=27.94 Aligned_cols=60 Identities=15% Similarity=0.187 Sum_probs=40.6
Q ss_pred HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEE------eC-CCCHHHHHHHHHHHHHh
Q 044790 38 IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFL------VK-PIRKNELQNLWQHVWRK 98 (162)
Q Consensus 38 ~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l------~K-P~~~~~L~~~i~~~l~~ 98 (162)
.++++.+++.- ...+|||.+.+-...+++.+.+.+||+..- .+ |.-..++..-|.+.+.+
T Consensus 328 l~~v~~l~~~~-~~~ipIIgvGGI~sg~Da~e~i~AGAs~VQv~Ta~~~~Gp~~i~~I~~eL~~~l~~ 394 (409)
T PLN02826 328 TEVLREMYRLT-RGKIPLVGCGGVSSGEDAYKKIRAGASLVQLYTAFAYEGPALIPRIKAELAACLER 394 (409)
T ss_pred HHHHHHHHHHh-CCCCcEEEECCCCCHHHHHHHHHhCCCeeeecHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 45666665432 137999999999999999999999999663 32 43334455555544443
No 417
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=50.93 E-value=48 Score=23.13 Aligned_cols=51 Identities=10% Similarity=0.114 Sum_probs=30.3
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCC
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHD 62 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~ 62 (162)
+..|.++++.+. ....+|++=++ .-.++-+|++.+++.. ...|||++-...
T Consensus 41 ~~~d~l~~~~~D-~~t~~I~ly~E-~~~d~~~f~~~~~~a~--~~KPVv~lk~Gr 91 (138)
T PF13607_consen 41 DFADLLEYLAED-PDTRVIVLYLE-GIGDGRRFLEAARRAA--RRKPVVVLKAGR 91 (138)
T ss_dssp -HHHHHHHHCT--SS--EEEEEES---S-HHHHHHHHHHHC--CCS-EEEEE---
T ss_pred CHHHHHHHHhcC-CCCCEEEEEcc-CCCCHHHHHHHHHHHh--cCCCEEEEeCCC
Confidence 567888888762 44677777665 3456888888888765 458988887653
No 418
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=50.79 E-value=1.2e+02 Score=23.97 Aligned_cols=61 Identities=23% Similarity=0.146 Sum_probs=40.8
Q ss_pred HHHHHhhCCCccEEEEcCCCC-------------CCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcC-CceE
Q 044790 13 WKILEDLMDQIDLVLTEVLMP-------------CLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKG-AVYF 78 (162)
Q Consensus 13 l~~l~~~~~~~DlvllD~~mp-------------~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~G-a~~~ 78 (162)
++.+.+ ..+|.|-+..... ....+++++.|++. ..+||+........+.+.++++.| ++-.
T Consensus 234 a~~l~~--~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~---~~iPVi~~Ggi~t~~~a~~~l~~g~aD~V 308 (327)
T cd02803 234 AKALEE--AGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKA---VKIPVIAVGGIRDPEVAEEILAEGKADLV 308 (327)
T ss_pred HHHHHH--cCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHH---CCCCEEEeCCCCCHHHHHHHHHCCCCCee
Confidence 444555 5678876533221 23346778888875 368999888877899999999985 5543
No 419
>PRK11596 cyclic-di-GMP phosphodiesterase; Provisional
Probab=50.65 E-value=78 Score=24.03 Aligned_cols=85 Identities=13% Similarity=0.148 Sum_probs=54.2
Q ss_pred EcCHHHHHHHHHhhCCCccEEEEcCCC----C-CCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCc---e
Q 044790 6 VENGLQAWKILEDLMDQIDLVLTEVLM----P-CLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAV---Y 77 (162)
Q Consensus 6 a~~~~eal~~l~~~~~~~DlvllD~~m----p-~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~---~ 77 (162)
+..+...+..+.. -+||.|=+|-.+ . ...+..+++.+-.......+. ++...-+..+....+.+.|++ |
T Consensus 160 fG~g~s~l~~L~~--l~~d~IKiD~~~i~~i~~~~~~~~~~~~lv~~a~~~~~~-viAeGVEt~eq~~~l~~lG~d~~QG 236 (255)
T PRK11596 160 FGTGMANFSALSE--VRYDYIKVARELFIMLRQSEEGRNLFSQLLHLMNRYCRG-VIVEGVETPEEWRDVQRSPAFAAQG 236 (255)
T ss_pred CCCCHHHHHHHHh--CCCCEEEECHHHHHhhhcChhhHHHHHHHHHHHHHcCCe-EEEEeCCCHHHHHHHHHCCCCEeec
Confidence 4455566777777 789999998532 1 223344444432211112333 556677788888889999997 4
Q ss_pred -EEeCCCCHHHHHHHHH
Q 044790 78 -FLVKPIRKNELQNLWQ 93 (162)
Q Consensus 78 -~l~KP~~~~~L~~~i~ 93 (162)
|+.||...+++...+.
T Consensus 237 y~~~~P~~~~~~~~l~~ 253 (255)
T PRK11596 237 YFLSRPAPFETLETLPL 253 (255)
T ss_pred CccCCCCCHHHHHHHHh
Confidence 5888999988876553
No 420
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=50.56 E-value=46 Score=26.26 Aligned_cols=37 Identities=11% Similarity=0.141 Sum_probs=24.2
Q ss_pred HHHHHHHhhCCCccEEEEcCCCCCC-----CHHHHHHHHHcc
Q 044790 11 QAWKILEDLMDQIDLVLTEVLMPCL-----SGIGLLRKIMNH 47 (162)
Q Consensus 11 eal~~l~~~~~~~DlvllD~~mp~~-----~g~~~~~~ir~~ 47 (162)
++.++++.....+|+||+|..-|.. ...++.+.+++.
T Consensus 138 Dg~~~v~~~~~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~ 179 (282)
T COG0421 138 DGVEFLRDCEEKFDVIIVDSTDPVGPAEALFTEEFYEGCRRA 179 (282)
T ss_pred cHHHHHHhCCCcCCEEEEcCCCCCCcccccCCHHHHHHHHHh
Confidence 4455555432469999999988832 235677777653
No 421
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=50.41 E-value=1.2e+02 Score=23.69 Aligned_cols=77 Identities=12% Similarity=0.076 Sum_probs=50.2
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHH
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNE 87 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~ 87 (162)
+..+..+.+.. .|++++=.. ..-|.-+++.+. ..+|||....... .+.+..|..+++..|-+.++
T Consensus 251 ~~~~~~~~~~~----ad~~v~ps~--e~~g~~~~Eama-----~G~Pvi~~~~~~~----~e~i~~~~~G~~~~~~~~~~ 315 (351)
T cd03804 251 SDEELRDLYAR----ARAFLFPAE--EDFGIVPVEAMA-----SGTPVIAYGKGGA----LETVIDGVTGILFEEQTVES 315 (351)
T ss_pred CHHHHHHHHHh----CCEEEECCc--CCCCchHHHHHH-----cCCCEEEeCCCCC----cceeeCCCCEEEeCCCCHHH
Confidence 34445555544 577775544 334555666654 4789987654332 23345577899999999999
Q ss_pred HHHHHHHHHHhc
Q 044790 88 LQNLWQHVWRKC 99 (162)
Q Consensus 88 L~~~i~~~l~~~ 99 (162)
|.+.|..++...
T Consensus 316 la~~i~~l~~~~ 327 (351)
T cd03804 316 LAAAVERFEKNE 327 (351)
T ss_pred HHHHHHHHHhCc
Confidence 999999887654
No 422
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=50.37 E-value=1.3e+02 Score=23.95 Aligned_cols=89 Identities=11% Similarity=0.158 Sum_probs=62.9
Q ss_pred EEcCHHHHHHHHHhhCCCccEEEEcCC---------CCCCCHHHHHHHHHccCCCCCCcEEEEecCC-CHHHHHHHHHcC
Q 044790 5 AVENGLQAWKILEDLMDQIDLVLTEVL---------MPCLSGIGLLRKIMNHKTCKNIPVIMMSSHD-SMSIVFKCLSKG 74 (162)
Q Consensus 5 ~a~~~~eal~~l~~~~~~~DlvllD~~---------mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~-~~~~~~~a~~~G 74 (162)
...+.++|++.++. ..+|.+=.-+- .|.. .++.++.|++.. .+|+++=.+.. ..+.++++++.|
T Consensus 154 ~~tdp~ea~~fv~~--tgiD~LA~aiGn~HG~Yk~~~p~L-~~~~L~~i~~~~---~~PlVlHGgSGip~~eI~~aI~~G 227 (286)
T COG0191 154 DLTDPEEALEFVER--TGIDALAAAIGNVHGVYKPGNPKL-DFDRLKEIQEAV---SLPLVLHGGSGIPDEEIREAIKLG 227 (286)
T ss_pred hhCCHHHHHHHHhc--cCcceeeeeccccccCCCCCCCCC-CHHHHHHHHHHh---CCCEEEeCCCCCCHHHHHHHHHhC
Confidence 36789999999998 77888776652 2333 378889998764 48877666544 667789999999
Q ss_pred CceEEeCCCCHHHHHHHHHHHHHhc
Q 044790 75 AVYFLVKPIRKNELQNLWQHVWRKC 99 (162)
Q Consensus 75 a~~~l~KP~~~~~L~~~i~~~l~~~ 99 (162)
+...=.-.-..-.+...|++++...
T Consensus 228 V~KvNi~Td~~~A~~~avr~~~~~~ 252 (286)
T COG0191 228 VAKVNIDTDLQLAFTAAVREYLAEN 252 (286)
T ss_pred ceEEeeCcHHHHHHHHHHHHHHHhC
Confidence 8877555544556666666666554
No 423
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=50.36 E-value=35 Score=30.61 Aligned_cols=75 Identities=11% Similarity=0.212 Sum_probs=46.0
Q ss_pred CccEEEEcC-CCCCCCHHH-HHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 044790 22 QIDLVLTEV-LMPCLSGIG-LLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVWRKC 99 (162)
Q Consensus 22 ~~DlvllD~-~mp~~~g~~-~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~~ 99 (162)
++.|||+|- .+-....+. +++.|...+ ..+.+|+++.. ...+...+..-+..|-.+|+..+++...|.+++...
T Consensus 119 k~KVIIIDEad~Ls~~A~NALLKtLEEPp--~~v~fILaTtd--~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kE 194 (709)
T PRK08691 119 KYKVYIIDEVHMLSKSAFNAMLKTLEEPP--EHVKFILATTD--PHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSE 194 (709)
T ss_pred CcEEEEEECccccCHHHHHHHHHHHHhCC--CCcEEEEEeCC--ccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHc
Confidence 467999975 332222232 345554433 46667766642 222333333455678888999999999999988865
Q ss_pred c
Q 044790 100 H 100 (162)
Q Consensus 100 ~ 100 (162)
.
T Consensus 195 g 195 (709)
T PRK08691 195 K 195 (709)
T ss_pred C
Confidence 3
No 424
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=50.32 E-value=47 Score=27.32 Aligned_cols=42 Identities=10% Similarity=0.061 Sum_probs=32.5
Q ss_pred HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCC
Q 044790 38 IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPI 83 (162)
Q Consensus 38 ~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~ 83 (162)
|+-+++||+. ..+|||+=-- -..+....+.+.|++.++.-..
T Consensus 213 W~di~wlr~~---~~~PiivKgV-~~~~dA~~a~~~Gvd~I~Vsnh 254 (367)
T PLN02493 213 WKDVQWLQTI---TKLPILVKGV-LTGEDARIAIQAGAAGIIVSNH 254 (367)
T ss_pred HHHHHHHHhc---cCCCEEeecC-CCHHHHHHHHHcCCCEEEECCC
Confidence 5667888875 4688885444 5788899999999999987743
No 425
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=49.82 E-value=55 Score=29.23 Aligned_cols=56 Identities=11% Similarity=0.132 Sum_probs=40.2
Q ss_pred CCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHH
Q 044790 34 CLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQH 94 (162)
Q Consensus 34 ~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~ 94 (162)
..+--+.++.+|+ ..+.++|+|+........-|.+.|+++|+.. ..+++=.+.|+.
T Consensus 447 R~~~~eai~~Lr~----~GI~vvMiTGDn~~TA~aIA~elGId~v~A~-~~PedK~~iV~~ 502 (679)
T PRK01122 447 KPGIKERFAELRK----MGIKTVMITGDNPLTAAAIAAEAGVDDFLAE-ATPEDKLALIRQ 502 (679)
T ss_pred chhHHHHHHHHHH----CCCeEEEECCCCHHHHHHHHHHcCCcEEEcc-CCHHHHHHHHHH
Confidence 3445677888887 4688999999888888888999999998764 233333333433
No 426
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=49.75 E-value=69 Score=27.46 Aligned_cols=74 Identities=8% Similarity=0.130 Sum_probs=44.3
Q ss_pred CccEEEEcCCCCCCCH--H-HHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHHHh
Q 044790 22 QIDLVLTEVLMPCLSG--I-GLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVWRK 98 (162)
Q Consensus 22 ~~DlvllD~~mp~~~g--~-~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 98 (162)
.+.+||+|=-- .++. + .+++.|...+ ..+-+|+++. ....+...+..-+.-|-.+|++.+++...|+.++..
T Consensus 116 ~~kVVIIDEad-~ls~~a~naLLk~LEep~--~~t~~Il~t~--~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~ 190 (504)
T PRK14963 116 GRKVYILDEAH-MMSKSAFNALLKTLEEPP--EHVIFILATT--EPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEA 190 (504)
T ss_pred CCeEEEEECcc-ccCHHHHHHHHHHHHhCC--CCEEEEEEcC--ChhhCChHHhcceEEEEecCCCHHHHHHHHHHHHHH
Confidence 46799988421 2222 2 2333333321 2333444442 334445566666778888999999999999998876
Q ss_pred cc
Q 044790 99 CH 100 (162)
Q Consensus 99 ~~ 100 (162)
..
T Consensus 191 eg 192 (504)
T PRK14963 191 EG 192 (504)
T ss_pred cC
Confidence 53
No 427
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=49.72 E-value=1.2e+02 Score=23.91 Aligned_cols=54 Identities=15% Similarity=0.172 Sum_probs=40.8
Q ss_pred HHHHHHHHccCCCC-CCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHH
Q 044790 38 IGLLRKIMNHKTCK-NIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHV 95 (162)
Q Consensus 38 ~~~~~~ir~~~~~~-~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~ 95 (162)
.+.++.+|+.. + ..+|.+ .-...+.+.+++++|+|-.+.-.++++++.+.+..+
T Consensus 180 ~~av~~~r~~~--~~~~kIeV--Ev~slee~~ea~~~gaDiImLDn~s~e~l~~av~~~ 234 (281)
T PRK06543 180 TEALRHVRAQL--GHTTHVEV--EVDRLDQIEPVLAAGVDTIMLDNFSLDDLREGVELV 234 (281)
T ss_pred HHHHHHHHHhC--CCCCcEEE--EeCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHh
Confidence 35566777654 4 244443 334788899999999999999999999999999854
No 428
>cd01148 TroA_a Metal binding protein TroA_a. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=49.70 E-value=35 Score=26.16 Aligned_cols=79 Identities=13% Similarity=0.114 Sum_probs=42.6
Q ss_pred HHHHHhhCCCccEEEEcCCCCCCCH-HHHHHHHHccCCCCCCcEEEEec-------CCCHHHHHHHHH-cCCceEEeCCC
Q 044790 13 WKILEDLMDQIDLVLTEVLMPCLSG-IGLLRKIMNHKTCKNIPVIMMSS-------HDSMSIVFKCLS-KGAVYFLVKPI 83 (162)
Q Consensus 13 l~~l~~~~~~~DlvllD~~mp~~~g-~~~~~~ir~~~~~~~~piI~lt~-------~~~~~~~~~a~~-~Ga~~~l~KP~ 83 (162)
+|.+-+ ..|||||.+.......+ .+.+++|++ ..+|++++.. ........+.+. .| ..+-|+-
T Consensus 72 ~E~I~~--l~PDlIi~~~~~~~~~~~~~~~~~L~~----~gipv~~~~~~~~~~~~~~~~~~~~~~~~~lg--~~~g~e~ 143 (284)
T cd01148 72 KETVLA--ARPDLVFGGWSYGFDKGGLGTPDSLAE----LGIKTYILPESCGQRRGEATLDDVYNDIRNLG--KIFDVED 143 (284)
T ss_pred HHHHhc--CCCCEEEEecccccCCCCCCCHHHHHH----CCCeEEECchhccCCCCCCCHHHHHHHHHHHH--HHhCCHh
Confidence 455555 68999999754322222 344566654 4688888853 122222222121 12 1444555
Q ss_pred CHHHHHHHHHHHHHhc
Q 044790 84 RKNELQNLWQHVWRKC 99 (162)
Q Consensus 84 ~~~~L~~~i~~~l~~~ 99 (162)
..+++...+++.+...
T Consensus 144 ~A~~~i~~~~~~~~~v 159 (284)
T cd01148 144 RADKLVADLKARLAEI 159 (284)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6677777666666543
No 429
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=49.67 E-value=48 Score=26.09 Aligned_cols=40 Identities=18% Similarity=0.071 Sum_probs=31.0
Q ss_pred HHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEE
Q 044790 39 GLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFL 79 (162)
Q Consensus 39 ~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l 79 (162)
..++.+++.- ...+|||....-...+.+.+.+.+||+...
T Consensus 231 ~~v~~~~~~~-~~~ipIig~GGI~s~~da~e~l~aGA~~Vq 270 (294)
T cd04741 231 GNVRTFRRLL-PSEIQIIGVGGVLDGRGAFRMRLAGASAVQ 270 (294)
T ss_pred HHHHHHHHhc-CCCCCEEEeCCCCCHHHHHHHHHcCCCcee
Confidence 4456665532 126999999999999999999999999763
No 430
>cd01139 TroA_f Periplasmic binding protein TroA_f. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=49.66 E-value=56 Score=25.89 Aligned_cols=79 Identities=16% Similarity=0.204 Sum_probs=42.3
Q ss_pred HHHHHhhCCCccEEEEcCCCCCC-CHHHHHHHHHccCCCCCCcEEEEecCC-CHHHHHHHHHcCCceEEeCCCCHHHHHH
Q 044790 13 WKILEDLMDQIDLVLTEVLMPCL-SGIGLLRKIMNHKTCKNIPVIMMSSHD-SMSIVFKCLSKGAVYFLVKPIRKNELQN 90 (162)
Q Consensus 13 l~~l~~~~~~~DlvllD~~mp~~-~g~~~~~~ir~~~~~~~~piI~lt~~~-~~~~~~~a~~~Ga~~~l~KP~~~~~L~~ 90 (162)
+|.+.. ..|||||........ ...+..+.|++ ..+|++++.... ..+...+.+.. .-..+-|+-..++|..
T Consensus 84 ~E~l~~--l~PDLIi~~~~~~~~~~~~~~~~~l~~----~gipvv~~~~~~~~~~~~~~~i~~-lg~i~g~~~~A~~li~ 156 (342)
T cd01139 84 VEKVLT--LKPDLVILNIWAKTTAEESGILEKLEQ----AGIPVVFVDFRQKPLKNTTPSMRL-LGKALGREERAEEFIE 156 (342)
T ss_pred HHHHhh--cCCCEEEEeccccccchhhHHHHHHHH----cCCcEEEEeCCCchhhhHHHHHHH-HHHHhCCHHHHHHHHH
Confidence 445555 689999986544321 23456777765 358998886432 12222222221 1113455556666666
Q ss_pred HHHHHHHh
Q 044790 91 LWQHVWRK 98 (162)
Q Consensus 91 ~i~~~l~~ 98 (162)
.++..+..
T Consensus 157 ~~~~~l~~ 164 (342)
T cd01139 157 FYQERIDR 164 (342)
T ss_pred HHHHHHHH
Confidence 66555443
No 431
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=49.45 E-value=67 Score=24.46 Aligned_cols=60 Identities=22% Similarity=0.280 Sum_probs=41.7
Q ss_pred CccEEEEcCCCCCCCHHHH----HHHHHccCCC---CCCcEEEEecCCCHHHHHHHHHcCCceEEeC
Q 044790 22 QIDLVLTEVLMPCLSGIGL----LRKIMNHKTC---KNIPVIMMSSHDSMSIVFKCLSKGAVYFLVK 81 (162)
Q Consensus 22 ~~DlvllD~~mp~~~g~~~----~~~ir~~~~~---~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~K 81 (162)
..|+|++=..-||..|-.| +++||+.... ..-..|-+-+.-..+.+..+..+||+-|+.=
T Consensus 131 ~vD~VllMsVnPGfgGQ~Fi~~~l~Ki~~lr~~~~~~~~~~IeVDGGI~~~t~~~~~~AGad~~VaG 197 (220)
T COG0036 131 DVDLVLLMSVNPGFGGQKFIPEVLEKIRELRAMIDERLDILIEVDGGINLETIKQLAAAGADVFVAG 197 (220)
T ss_pred hCCEEEEEeECCCCcccccCHHHHHHHHHHHHHhcccCCeEEEEeCCcCHHHHHHHHHcCCCEEEEE
Confidence 5788888777799888654 4555442211 1144677777788999999999999976543
No 432
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=49.38 E-value=76 Score=23.82 Aligned_cols=77 Identities=16% Similarity=0.164 Sum_probs=39.8
Q ss_pred HHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHH
Q 044790 13 WKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLW 92 (162)
Q Consensus 13 l~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i 92 (162)
+|.+.. .+|||||........ +....+++. ..+|++++......+...+.+.. +-.++-|+-..+++...+
T Consensus 67 ~E~i~~--l~PDLIi~~~~~~~~---~~~~~l~~~---~gipvv~~~~~~~~~~~~~~i~~-lg~~~g~~~~a~~~~~~~ 137 (262)
T cd01147 67 YEKIAA--LKPDVVIDVGSDDPT---SIADDLQKK---TGIPVVVLDGGDSLEDTPEQIRL-LGKVLGKEERAEELISFI 137 (262)
T ss_pred HHHHHh--cCCCEEEEecCCccc---hhHHHHHHh---hCCCEEEEecCCchHhHHHHHHH-HHHHhCCHHHHHHHHHHH
Confidence 345555 689999986443221 244455432 35788888754323333333321 111334555556666655
Q ss_pred HHHHHh
Q 044790 93 QHVWRK 98 (162)
Q Consensus 93 ~~~l~~ 98 (162)
+..+..
T Consensus 138 ~~~~~~ 143 (262)
T cd01147 138 ESILAD 143 (262)
T ss_pred HHHHHH
Confidence 555544
No 433
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=49.30 E-value=60 Score=20.70 Aligned_cols=22 Identities=14% Similarity=0.060 Sum_probs=14.7
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCC
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVL 31 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~ 31 (162)
...+..+.+++ ..+|+|++...
T Consensus 81 ~~~~i~~~~~~--~~~dlvvig~~ 102 (130)
T cd00293 81 PAEAILEAAEE--LGADLIVMGSR 102 (130)
T ss_pred CHHHHHHHHHH--cCCCEEEEcCC
Confidence 34555566666 67888888764
No 434
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=49.27 E-value=1.4e+02 Score=24.26 Aligned_cols=68 Identities=13% Similarity=0.077 Sum_probs=37.5
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHHH
Q 044790 23 IDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVWR 97 (162)
Q Consensus 23 ~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 97 (162)
.|++++--.....-|..+++.+. ..+|||.-..........+.+. ..+++..|-+.++|...|..++.
T Consensus 320 aDi~~v~~S~~e~~g~~~lEAma-----~G~PVI~g~~~~~~~e~~~~~~--~~g~~~~~~d~~~La~~l~~ll~ 387 (425)
T PRK05749 320 ADIAFVGGSLVKRGGHNPLEPAA-----FGVPVISGPHTFNFKEIFERLL--QAGAAIQVEDAEDLAKAVTYLLT 387 (425)
T ss_pred CCEEEECCCcCCCCCCCHHHHHH-----hCCCEEECCCccCHHHHHHHHH--HCCCeEEECCHHHHHHHHHHHhc
Confidence 46655522221113444555543 4688885332233333333322 22567778899999999998875
No 435
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=49.19 E-value=1.1e+02 Score=22.83 Aligned_cols=84 Identities=14% Similarity=0.144 Sum_probs=56.9
Q ss_pred EEcCHHHHHHHHHhhCCCccEEEEcCCCC-CCCHHHHHHHHHccCCCC-CCcEEEEecCCCHHHHHHHHHcCCceEE---
Q 044790 5 AVENGLQAWKILEDLMDQIDLVLTEVLMP-CLSGIGLLRKIMNHKTCK-NIPVIMMSSHDSMSIVFKCLSKGAVYFL--- 79 (162)
Q Consensus 5 ~a~~~~eal~~l~~~~~~~DlvllD~~mp-~~~g~~~~~~ir~~~~~~-~~piI~lt~~~~~~~~~~a~~~Ga~~~l--- 79 (162)
-+.+..|+.+..+ ...|.|-+ .| ..-|.+.++.++..- + .+|++.+.+- ..+.+.+.++.|++.+-
T Consensus 110 G~~t~~E~~~A~~---~Gad~vk~---Fpa~~~G~~~l~~l~~~~--~~~ipvvaiGGI-~~~n~~~~~~aGa~~vav~s 180 (206)
T PRK09140 110 GVATPTEAFAALR---AGAQALKL---FPASQLGPAGIKALRAVL--PPDVPVFAVGGV-TPENLAPYLAAGAAGFGLGS 180 (206)
T ss_pred ccCCHHHHHHHHH---cCCCEEEE---CCCCCCCHHHHHHHHhhc--CCCCeEEEECCC-CHHHHHHHHHCCCeEEEEeh
Confidence 4667778777665 46788875 23 345788888887643 3 6998877764 77888999999999875
Q ss_pred --eC-CCCHHHHHHHHHHHHH
Q 044790 80 --VK-PIRKNELQNLWQHVWR 97 (162)
Q Consensus 80 --~K-P~~~~~L~~~i~~~l~ 97 (162)
.+ ..+.+++....+.++.
T Consensus 181 ~l~~~~~~~~~i~~~a~~~~~ 201 (206)
T PRK09140 181 ALYRPGQSAEEVAERARAFVA 201 (206)
T ss_pred HhcccccChHHHHHHHHHHHH
Confidence 32 1233566666665544
No 436
>PRK15005 universal stress protein F; Provisional
Probab=49.16 E-value=67 Score=21.56 Aligned_cols=41 Identities=7% Similarity=0.171 Sum_probs=21.8
Q ss_pred HHHHHHhhCCCccEEEEcCCCCCCCHH----HHHHHHHccCCCCCCcEEEE
Q 044790 12 AWKILEDLMDQIDLVLTEVLMPCLSGI----GLLRKIMNHKTCKNIPVIMM 58 (162)
Q Consensus 12 al~~l~~~~~~~DlvllD~~mp~~~g~----~~~~~ir~~~~~~~~piI~l 58 (162)
.++...+ ..+|+|+|.....+..++ ..-+.+|. ..+||+++
T Consensus 99 I~~~a~~--~~~DLIV~Gs~~~~~~~~llGS~a~~vl~~----a~cpVlvV 143 (144)
T PRK15005 99 ILELAKK--IPADMIIIASHRPDITTYLLGSNAAAVVRH----AECSVLVV 143 (144)
T ss_pred HHHHHHH--cCCCEEEEeCCCCCchheeecchHHHHHHh----CCCCEEEe
Confidence 4444455 678888888664333321 12233333 35777765
No 437
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=49.09 E-value=62 Score=19.96 Aligned_cols=55 Identities=13% Similarity=0.096 Sum_probs=35.1
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHH
Q 044790 21 DQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQ 93 (162)
Q Consensus 21 ~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~ 93 (162)
.++.+..+||. +.-++.+ ... ..+||+.+........ ..++..|++.+.|.+.|+
T Consensus 27 ~~~~l~~vDI~----~d~~l~~----~Y~-~~IPVl~~~~~~~~~~---------~~~~~~~~d~~~L~~~L~ 81 (81)
T PF05768_consen 27 FPFELEEVDID----EDPELFE----KYG-YRIPVLHIDGIRQFKE---------QEELKWRFDEEQLRAWLE 81 (81)
T ss_dssp STCEEEEEETT----TTHHHHH----HSC-TSTSEEEETT-GGGCT---------SEEEESSB-HHHHHHHHH
T ss_pred cCceEEEEECC----CCHHHHH----Hhc-CCCCEEEEcCcccccc---------cceeCCCCCHHHHHHHhC
Confidence 56889999997 2222222 222 5899998886322211 457778899999998874
No 438
>cd08555 PI-PLCc_GDPD_SF Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily. The PI-PLC-like phosphodiesterases superfamily represents the catalytic domains of bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11), glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria, as well as their uncharacterized homologs found in organisms ranging from bacteria and archaea to metazoans, plants, and fungi. PI-PLCs are ubiquitous enzymes hydrolyzing the membrane lipid phosphoinositides to yield two important second messengers, inositol phosphates and diacylglycerol (DAG). GP-GDEs play essential roles in glycerol metabolism and catalyze the hydrolysis of glycerophosph
Probab=49.04 E-value=49 Score=23.77 Aligned_cols=30 Identities=17% Similarity=0.180 Sum_probs=23.6
Q ss_pred CCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 51 KNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 51 ~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
..++|.+.|.......+.++++.|++++++
T Consensus 148 ~g~~v~~wtvn~~~~~~~~l~~~Gvd~i~T 177 (179)
T cd08555 148 LGLLSRIWTVNDNNEIINKFLNLGVDGLIT 177 (179)
T ss_pred CCCEEEEEeeCChHHHHHHHHHcCCCEEeC
Confidence 467888888765478888899999998875
No 439
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=48.94 E-value=74 Score=24.40 Aligned_cols=51 Identities=18% Similarity=0.259 Sum_probs=30.3
Q ss_pred CCccEEEEcCC---C-CCC-C---HHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCC
Q 044790 21 DQIDLVLTEVL---M-PCL-S---GIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGA 75 (162)
Q Consensus 21 ~~~DlvllD~~---m-p~~-~---g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga 75 (162)
.++-+|++|+. + +.. . -.+.++++++ ..+++++.|++.-......+-+.|.
T Consensus 5 ~~~~lI~~DlDGTLL~~~~~i~~~~~~ai~~l~~----~Gi~~viaTGR~~~~i~~~~~~l~~ 63 (271)
T PRK03669 5 QDPLLIFTDLDGTLLDSHTYDWQPAAPWLTRLRE----AQVPVILCSSKTAAEMLPLQQTLGL 63 (271)
T ss_pred CCCeEEEEeCccCCcCCCCcCcHHHHHHHHHHHH----cCCeEEEEcCCCHHHHHHHHHHhCC
Confidence 46788998883 1 111 1 2334444443 5789999999886665444444444
No 440
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=48.89 E-value=1.1e+02 Score=22.95 Aligned_cols=75 Identities=16% Similarity=0.183 Sum_probs=48.5
Q ss_pred HHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHH
Q 044790 10 LQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQ 89 (162)
Q Consensus 10 ~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~ 89 (162)
++..+.+.. .|++|+-... +.-|..+++.+. ..+|||+..... ..+.+..+-.+++..+.+.++|.
T Consensus 267 ~~~~~~~~~----~di~i~~~~~-~~~~~~~~Ea~~-----~g~pvI~~~~~~----~~~~~~~~~~g~~~~~~~~~~l~ 332 (374)
T cd03801 267 EDLPALYAA----ADVFVLPSLY-EGFGLVLLEAMA-----AGLPVVASDVGG----IPEVVEDGETGLLVPPGDPEALA 332 (374)
T ss_pred hhHHHHHHh----cCEEEecchh-ccccchHHHHHH-----cCCcEEEeCCCC----hhHHhcCCcceEEeCCCCHHHHH
Confidence 455555543 5777654433 334556666664 467887554322 23335557889999999999999
Q ss_pred HHHHHHHHh
Q 044790 90 NLWQHVWRK 98 (162)
Q Consensus 90 ~~i~~~l~~ 98 (162)
..|..++..
T Consensus 333 ~~i~~~~~~ 341 (374)
T cd03801 333 EAILRLLDD 341 (374)
T ss_pred HHHHHHHcC
Confidence 999987654
No 441
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=48.85 E-value=66 Score=28.03 Aligned_cols=74 Identities=8% Similarity=0.095 Sum_probs=47.3
Q ss_pred CccEEEEcC-CCCCCCHHHHH-HHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 044790 22 QIDLVLTEV-LMPCLSGIGLL-RKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVWRKC 99 (162)
Q Consensus 22 ~~DlvllD~-~mp~~~g~~~~-~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~~ 99 (162)
.+-++|+|- +|-....+..+ +.|-.-+ .++.+|++|. +...+...+..-+.-|-.+|++.+++...|..++...
T Consensus 119 ~~KVvIIdev~~Lt~~a~naLLk~LEepp--~~~~fIl~t~--~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~e 194 (576)
T PRK14965 119 RYKIFIIDEVHMLSTNAFNALLKTLEEPP--PHVKFIFATT--EPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQE 194 (576)
T ss_pred CceEEEEEChhhCCHHHHHHHHHHHHcCC--CCeEEEEEeC--ChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHh
Confidence 456888874 33333334433 3443322 4566776664 3455556666667777788999999999999888765
No 442
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=48.69 E-value=1.2e+02 Score=23.05 Aligned_cols=64 Identities=17% Similarity=0.160 Sum_probs=40.8
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHHHh
Q 044790 23 IDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVWRK 98 (162)
Q Consensus 23 ~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 98 (162)
.|++|+-... ..-|..+++.+. ..+|||+.- .... .+.+.. .+++.++-+.+++...|..++..
T Consensus 269 adi~v~ps~~-e~~~~~~~Ea~a-----~g~PvI~~~-~~~~---~e~~~~--~g~~~~~~~~~~l~~~i~~l~~~ 332 (365)
T cd03807 269 LDVFVLSSLS-EGFPNVLLEAMA-----CGLPVVATD-VGDN---AELVGD--TGFLVPPGDPEALAEAIEALLAD 332 (365)
T ss_pred CCEEEeCCcc-ccCCcHHHHHHh-----cCCCEEEcC-CCCh---HHHhhc--CCEEeCCCCHHHHHHHHHHHHhC
Confidence 5777765444 333556667664 467887633 2222 222222 67899999999999999988764
No 443
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=48.51 E-value=1.2e+02 Score=23.31 Aligned_cols=66 Identities=18% Similarity=0.210 Sum_probs=43.8
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHHH
Q 044790 23 IDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVWR 97 (162)
Q Consensus 23 ~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 97 (162)
.|++|+=...+..-|..+++.+. ..+|||+... .. ..+.+..+..+++..|.+.++|...|...+.
T Consensus 264 ad~~i~ps~~~e~~~~~l~EA~a-----~G~PvI~~~~-~~---~~e~i~~~~~g~~~~~~~~~~l~~~i~~~~~ 329 (355)
T cd03819 264 ADIVVSASTEPEAFGRTAVEAQA-----MGRPVIASDH-GG---ARETVRPGETGLLVPPGDAEALAQALDQILS 329 (355)
T ss_pred CCEEEecCCCCCCCchHHHHHHh-----cCCCEEEcCC-CC---cHHHHhCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 56666543234445666777764 4788875433 22 2445666778999999999999999965543
No 444
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=48.42 E-value=1.1e+02 Score=26.31 Aligned_cols=75 Identities=8% Similarity=0.136 Sum_probs=45.3
Q ss_pred CccEEEEcC-CCCCCCHHHH-HHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 044790 22 QIDLVLTEV-LMPCLSGIGL-LRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVWRKC 99 (162)
Q Consensus 22 ~~DlvllD~-~mp~~~g~~~-~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~~ 99 (162)
.+-+||+|= .+-....+.. ++.|...+ +.+-+|+.| .....+...+..-+.-|=.+|++.+++...|+.++...
T Consensus 128 ~~KVvIIDEa~~Ls~~a~naLLk~LEepp--~~~vfI~aT--te~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~e 203 (507)
T PRK06645 128 KHKIFIIDEVHMLSKGAFNALLKTLEEPP--PHIIFIFAT--TEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQE 203 (507)
T ss_pred CcEEEEEEChhhcCHHHHHHHHHHHhhcC--CCEEEEEEe--CChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHc
Confidence 356888873 3322222333 33333322 344444444 34455666666666777789999999999999998764
Q ss_pred c
Q 044790 100 H 100 (162)
Q Consensus 100 ~ 100 (162)
.
T Consensus 204 g 204 (507)
T PRK06645 204 N 204 (507)
T ss_pred C
Confidence 3
No 445
>PLN02591 tryptophan synthase
Probab=48.37 E-value=58 Score=25.20 Aligned_cols=42 Identities=17% Similarity=0.077 Sum_probs=34.0
Q ss_pred HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCC
Q 044790 38 IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKP 82 (162)
Q Consensus 38 ~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP 82 (162)
.++++++|+. ..+||++=.+-...+.+.+..+.|+|+.+.-.
T Consensus 178 ~~~i~~vk~~---~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGS 219 (250)
T PLN02591 178 ESLLQELKEV---TDKPVAVGFGISKPEHAKQIAGWGADGVIVGS 219 (250)
T ss_pred HHHHHHHHhc---CCCceEEeCCCCCHHHHHHHHhcCCCEEEECH
Confidence 4457788774 58899986677779999999999999999865
No 446
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=48.27 E-value=1.5e+02 Score=24.28 Aligned_cols=77 Identities=16% Similarity=0.115 Sum_probs=51.4
Q ss_pred EEEEcCHHHHHHHHHhhC-CCccEEEEcCCCCCCC-------HHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHH-c
Q 044790 3 VIAVENGLQAWKILEDLM-DQIDLVLTEVLMPCLS-------GIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLS-K 73 (162)
Q Consensus 3 v~~a~~~~eal~~l~~~~-~~~DlvllD~~mp~~~-------g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~-~ 73 (162)
+.++.+..+.+++++... ...+++.+==.-+.+. -|+.++.|++.- +.+|||+=..-...+++.++++ .
T Consensus 148 IRI~~d~~kTvd~ak~~e~aG~~~ltVHGRtr~~kg~~~~pad~~~i~~v~~~~--~~ipviaNGnI~~~~d~~~~~~~t 225 (358)
T KOG2335|consen 148 IRIFVDLEKTVDYAKMLEDAGVSLLTVHGRTREQKGLKTGPADWEAIKAVRENV--PDIPVIANGNILSLEDVERCLKYT 225 (358)
T ss_pred EEecCcHHHHHHHHHHHHhCCCcEEEEecccHHhcCCCCCCcCHHHHHHHHHhC--cCCcEEeeCCcCcHHHHHHHHHHh
Confidence 455666666666654311 4566666544333333 378899998864 5688887776667788999998 7
Q ss_pred CCceEEeC
Q 044790 74 GAVYFLVK 81 (162)
Q Consensus 74 Ga~~~l~K 81 (162)
|+++.+.-
T Consensus 226 G~dGVM~a 233 (358)
T KOG2335|consen 226 GADGVMSA 233 (358)
T ss_pred CCceEEec
Confidence 99987653
No 447
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=48.26 E-value=1.1e+02 Score=22.72 Aligned_cols=70 Identities=17% Similarity=0.225 Sum_probs=49.1
Q ss_pred cCHHHHHHHHHhhCCCc-cEEEEcCCCC--C-CCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeC
Q 044790 7 ENGLQAWKILEDLMDQI-DLVLTEVLMP--C-LSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVK 81 (162)
Q Consensus 7 ~~~~eal~~l~~~~~~~-DlvllD~~mp--~-~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~K 81 (162)
.+..+..+.+++ ..+ .+.++|+.=- + ..-+++++.+++. ..+|+.+=..-...+.+.++++.|++..+.-
T Consensus 28 ~dp~~~a~~~~~--~g~~~l~v~dl~~~~~g~~~~~~~i~~i~~~---~~~pi~~ggGI~~~ed~~~~~~~Ga~~vvlg 101 (230)
T TIGR00007 28 DDPVEAAKKWEE--EGAERIHVVDLDGAKEGGPVNLPVIKKIVRE---TGVPVQVGGGIRSLEDVEKLLDLGVDRVIIG 101 (230)
T ss_pred CCHHHHHHHHHH--cCCCEEEEEeCCccccCCCCcHHHHHHHHHh---cCCCEEEeCCcCCHHHHHHHHHcCCCEEEEC
Confidence 367777777766 544 4666676432 1 1235778888764 3678887666678899999999999988765
No 448
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=48.24 E-value=57 Score=19.27 Aligned_cols=49 Identities=16% Similarity=0.253 Sum_probs=31.3
Q ss_pred EcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCC-CCcEEEEec
Q 044790 6 VENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCK-NIPVIMMSS 60 (162)
Q Consensus 6 a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~-~~piI~lt~ 60 (162)
|.....|.+++.+ ..++.-..|+... -+..+.++...... .+|+|++-.
T Consensus 10 Cp~C~~ak~~L~~--~~i~~~~i~i~~~----~~~~~~~~~~~~~~~~vP~v~i~g 59 (75)
T cd03418 10 CPYCVRAKALLDK--KGVDYEEIDVDGD----PALREEMINRSGGRRTVPQIFIGD 59 (75)
T ss_pred ChHHHHHHHHHHH--CCCcEEEEECCCC----HHHHHHHHHHhCCCCccCEEEECC
Confidence 4566788888888 6778888888643 23344443322123 799998775
No 449
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=48.20 E-value=1.3e+02 Score=23.42 Aligned_cols=61 Identities=10% Similarity=0.091 Sum_probs=45.3
Q ss_pred HHHHHHHHHccCCCCCCcEEEEecCC--CHHHHHHHHHcCCceE-----EeCCCCHHHHHHHHHHHHHhcc
Q 044790 37 GIGLLRKIMNHKTCKNIPVIMMSSHD--SMSIVFKCLSKGAVYF-----LVKPIRKNELQNLWQHVWRKCH 100 (162)
Q Consensus 37 g~~~~~~ir~~~~~~~~piI~lt~~~--~~~~~~~a~~~Ga~~~-----l~KP~~~~~L~~~i~~~l~~~~ 100 (162)
-+++++.+++. ..+||+-+++-. .+-+....+++|+++. |.|.-+++++..+|-.....+.
T Consensus 194 p~elv~~~~~~---grLPVvnFAAGGvATPADAALMM~LGadGVFVGSGIFKS~~P~~~A~AIV~A~~~yd 261 (296)
T COG0214 194 PYELVKEVAKL---GRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKRAKAIVEATTHYD 261 (296)
T ss_pred hHHHHHHHHHh---CCCCeEeecccCcCChhHHHHHHHhCCCeEEecccccCCCCHHHHHHHHHHHHHccC
Confidence 35777777765 478999998754 4555556678999998 4688899999999887665543
No 450
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=48.12 E-value=75 Score=24.21 Aligned_cols=37 Identities=11% Similarity=0.197 Sum_probs=23.9
Q ss_pred CHHHHHHHHHccCCCCCCcEEEEec---CCCHHHHHHHHHcCCc
Q 044790 36 SGIGLLRKIMNHKTCKNIPVIMMSS---HDSMSIVFKCLSKGAV 76 (162)
Q Consensus 36 ~g~~~~~~ir~~~~~~~~piI~lt~---~~~~~~~~~a~~~Ga~ 76 (162)
...+++++++. ...+++++|. +............|.+
T Consensus 21 ~a~~~l~~l~~----~g~~~~~~Tnn~~r~~~~~~~~l~~~g~~ 60 (249)
T TIGR01457 21 EAETFVHELQK----RDIPYLFVTNNSTRTPESVAEMLASFDIP 60 (249)
T ss_pred CHHHHHHHHHH----CCCeEEEEeCCCCCCHHHHHHHHHHcCCC
Confidence 36788888876 4688999985 3344444445556654
No 451
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=48.07 E-value=1.2e+02 Score=25.32 Aligned_cols=66 Identities=15% Similarity=0.225 Sum_probs=43.2
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHc------CCceEEeCCCCHHHHHHHHHHHH
Q 044790 23 IDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSK------GAVYFLVKPIRKNELQNLWQHVW 96 (162)
Q Consensus 23 ~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~------Ga~~~l~KP~~~~~L~~~i~~~l 96 (162)
.|++++-... ..-|..+++.+. ..+|||. |.... ..+.+.. |..+++..|-+.++|...|.+++
T Consensus 371 aDv~vlpS~~-Eg~p~~vlEAma-----~G~PVVa-td~g~---~~elv~~~~~~~~g~~G~lv~~~d~~~la~ai~~ll 440 (475)
T cd03813 371 LDVLVLTSIS-EGQPLVILEAMA-----AGIPVVA-TDVGS---CRELIEGADDEALGPAGEVVPPADPEALARAILRLL 440 (475)
T ss_pred CCEEEeCchh-hcCChHHHHHHH-----cCCCEEE-CCCCC---hHHHhcCCcccccCCceEEECCCCHHHHHHHHHHHh
Confidence 5676665432 233556666664 4678876 43322 2333333 67899999999999999999887
Q ss_pred Hh
Q 044790 97 RK 98 (162)
Q Consensus 97 ~~ 98 (162)
..
T Consensus 441 ~~ 442 (475)
T cd03813 441 KD 442 (475)
T ss_pred cC
Confidence 53
No 452
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=48.03 E-value=47 Score=26.99 Aligned_cols=38 Identities=24% Similarity=0.199 Sum_probs=29.5
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCC
Q 044790 21 DQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHD 62 (162)
Q Consensus 21 ~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~ 62 (162)
.+||++|+ +.-|+++ +.+.+.+|+.. +.+|+|-..+..
T Consensus 75 ~~pd~~i~-iD~p~Fn-l~lak~~k~~~--~~i~viyyi~Pq 112 (347)
T PRK14089 75 KQADKVLL-MDSSSFN-IPLAKKIKKAY--PKKEIIYYILPQ 112 (347)
T ss_pred cCCCEEEE-eCCCCCC-HHHHHHHHhcC--CCCCEEEEECcc
Confidence 57998887 5668888 56889998765 689999877644
No 453
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=47.96 E-value=1e+02 Score=26.33 Aligned_cols=31 Identities=19% Similarity=0.297 Sum_probs=26.0
Q ss_pred CCCcEEEEecCCCHHHHHHHHHcCCceEEeC
Q 044790 51 KNIPVIMMSSHDSMSIVFKCLSKGAVYFLVK 81 (162)
Q Consensus 51 ~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~K 81 (162)
..+|||.=..-....++.+|+.+||+..+.=
T Consensus 343 ~~v~vIadGGi~~~~di~kAla~GA~~Vm~G 373 (495)
T PTZ00314 343 RGVPCIADGGIKNSGDICKALALGADCVMLG 373 (495)
T ss_pred cCCeEEecCCCCCHHHHHHHHHcCCCEEEEC
Confidence 4688887777788999999999999988654
No 454
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=47.93 E-value=1.3e+02 Score=23.32 Aligned_cols=83 Identities=14% Similarity=0.116 Sum_probs=55.4
Q ss_pred HHHHHHHHHhhCCCccEEEEcCCCCCCCH-HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeC--CCCH
Q 044790 9 GLQAWKILEDLMDQIDLVLTEVLMPCLSG-IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVK--PIRK 85 (162)
Q Consensus 9 ~~eal~~l~~~~~~~DlvllD~~mp~~~g-~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~K--P~~~ 85 (162)
..+....+.+ .....|-+...-....| ++.++.++.. -.+||+.=---.++..+.++...||+..|.- -.+.
T Consensus 63 ~~~~A~~y~~--~GA~aISVlTe~~~F~Gs~~~l~~v~~~---v~~PvL~KDFIid~~QI~ea~~~GADavLLI~~~L~~ 137 (247)
T PRK13957 63 PVQIAKTYET--LGASAISVLTDQSYFGGSLEDLKSVSSE---LKIPVLRKDFILDEIQIREARAFGASAILLIVRILTP 137 (247)
T ss_pred HHHHHHHHHH--CCCcEEEEEcCCCcCCCCHHHHHHHHHh---cCCCEEeccccCCHHHHHHHHHcCCCEEEeEHhhCCH
Confidence 3333444555 55666665555444444 7888888875 3689987777778999999999999998543 4555
Q ss_pred HHHHHHHHHHH
Q 044790 86 NELQNLWQHVW 96 (162)
Q Consensus 86 ~~L~~~i~~~l 96 (162)
++|...+....
T Consensus 138 ~~l~~l~~~a~ 148 (247)
T PRK13957 138 SQIKSFLKHAS 148 (247)
T ss_pred HHHHHHHHHHH
Confidence 56666555443
No 455
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=47.61 E-value=1.3e+02 Score=23.40 Aligned_cols=48 Identities=13% Similarity=0.026 Sum_probs=32.3
Q ss_pred cCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEec
Q 044790 7 ENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSS 60 (162)
Q Consensus 7 ~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~ 60 (162)
.+....+..+.. ..+|+|++... ..+...+++.+++.. ...+++..+.
T Consensus 183 ~d~~~~v~~l~~--~~~d~i~~~~~--~~~~~~~~~~~~~~g--~~~~~~~~~~ 230 (345)
T cd06338 183 ADLSPLISKAKA--AGPDAVVVAGH--FPDAVLLVRQMKELG--YNPKALYMTV 230 (345)
T ss_pred cchHHHHHHHHh--cCCCEEEECCc--chhHHHHHHHHHHcC--CCCCEEEEec
Confidence 355667777777 78999998653 335677888888754 4556665544
No 456
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=47.56 E-value=51 Score=26.23 Aligned_cols=50 Identities=14% Similarity=0.096 Sum_probs=37.7
Q ss_pred CCCcEEEEecCCCHHHHHHHHHcCCceE------EeC-CCCHHHHHHHHHHHHHhcc
Q 044790 51 KNIPVIMMSSHDSMSIVFKCLSKGAVYF------LVK-PIRKNELQNLWQHVWRKCH 100 (162)
Q Consensus 51 ~~~piI~lt~~~~~~~~~~a~~~Ga~~~------l~K-P~~~~~L~~~i~~~l~~~~ 100 (162)
..+|||-+..-...+++.+.+.+||+.. +.+ |--..++..-|..++.+..
T Consensus 240 ~~ipIig~GGI~s~~da~e~i~aGA~~Vqv~ta~~~~gp~~~~~i~~~L~~~l~~~g 296 (310)
T PRK02506 240 PSIQIIGTGGVKTGRDAFEHILCGASMVQVGTALHKEGPAVFERLTKELKAIMAEKG 296 (310)
T ss_pred CCCCEEEECCCCCHHHHHHHHHcCCCHHhhhHHHHHhChHHHHHHHHHHHHHHHHhC
Confidence 4799999999999999999999999854 433 5445666666666666544
No 457
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=47.53 E-value=1.1e+02 Score=22.44 Aligned_cols=81 Identities=20% Similarity=0.200 Sum_probs=47.7
Q ss_pred HHHHHHHHhhCCCccEEEEcCCCC----CCC-HHHHHHHHHccCCCCCCc--EEEEecCCCHHHHHHHHHcCCceEEeCC
Q 044790 10 LQAWKILEDLMDQIDLVLTEVLMP----CLS-GIGLLRKIMNHKTCKNIP--VIMMSSHDSMSIVFKCLSKGAVYFLVKP 82 (162)
Q Consensus 10 ~eal~~l~~~~~~~DlvllD~~mp----~~~-g~~~~~~ir~~~~~~~~p--iI~lt~~~~~~~~~~a~~~Ga~~~l~KP 82 (162)
.+.++.+.+ ...|.|=+|+.-. ... +++.+++|+... + .+ +-+++. .....+..+.+.|++.++.--
T Consensus 19 ~~~~~~~~~--~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~--~-~~~~v~l~v~-d~~~~i~~~~~~g~d~v~vh~ 92 (220)
T PRK05581 19 GEEVKAVEA--AGADWIHVDVMDGHFVPNLTIGPPVVEAIRKVT--K-LPLDVHLMVE-NPDRYVPDFAKAGADIITFHV 92 (220)
T ss_pred HHHHHHHHH--cCCCEEEEeCccCCcCCCcCcCHHHHHHHHhcC--C-CcEEEEeeeC-CHHHHHHHHHHcCCCEEEEee
Confidence 344555665 6688888875322 111 688889998643 2 33 324443 455567788899999865554
Q ss_pred CCHHHHHHHHHHHH
Q 044790 83 IRKNELQNLWQHVW 96 (162)
Q Consensus 83 ~~~~~L~~~i~~~l 96 (162)
...++....++.+.
T Consensus 93 ~~~~~~~~~~~~~~ 106 (220)
T PRK05581 93 EASEHIHRLLQLIK 106 (220)
T ss_pred ccchhHHHHHHHHH
Confidence 43455555554443
No 458
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=47.37 E-value=83 Score=22.94 Aligned_cols=39 Identities=8% Similarity=0.077 Sum_probs=26.5
Q ss_pred HHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEE
Q 044790 37 GIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFL 79 (162)
Q Consensus 37 g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l 79 (162)
-.++++++++ ..+++.++|...........-..|..+|+
T Consensus 87 ~~~~l~~L~~----~g~~~~i~S~~~~~~~~~~l~~~gl~~~f 125 (214)
T PRK13288 87 VYETLKTLKK----QGYKLGIVTTKMRDTVEMGLKLTGLDEFF 125 (214)
T ss_pred HHHHHHHHHH----CCCeEEEEeCCCHHHHHHHHHHcCChhce
Confidence 3678888886 35888989987655444444446777665
No 459
>PRK08005 epimerase; Validated
Probab=47.14 E-value=70 Score=24.09 Aligned_cols=59 Identities=12% Similarity=0.108 Sum_probs=40.6
Q ss_pred CccEEEEcCCCCCCCHHHHH----HHHHccCCC-CCCcEEEEecCCCHHHHHHHHHcCCceEEeC
Q 044790 22 QIDLVLTEVLMPCLSGIGLL----RKIMNHKTC-KNIPVIMMSSHDSMSIVFKCLSKGAVYFLVK 81 (162)
Q Consensus 22 ~~DlvllD~~mp~~~g~~~~----~~ir~~~~~-~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~K 81 (162)
.+|+|++=..-||..|..+. ++|++.... ... -|-+-+.-..+.+..+.++||+-|+.=
T Consensus 128 ~vD~VlvMsV~PGf~GQ~f~~~~~~KI~~l~~~~~~~-~I~VDGGI~~~~i~~l~~aGad~~V~G 191 (210)
T PRK08005 128 QLDALMIMTSEPDGRGQQFIAAMCEKVSQSREHFPAA-ECWADGGITLRAARLLAAAGAQHLVIG 191 (210)
T ss_pred hcCEEEEEEecCCCccceecHHHHHHHHHHHHhcccC-CEEEECCCCHHHHHHHHHCCCCEEEEC
Confidence 46877776677998887664 355542211 222 367777778899999999999977553
No 460
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=46.91 E-value=1.6e+02 Score=24.06 Aligned_cols=73 Identities=19% Similarity=0.199 Sum_probs=49.8
Q ss_pred cCHHHHHHHHHhhCCCccEEEEcC----CC-CCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceE-Ee
Q 044790 7 ENGLQAWKILEDLMDQIDLVLTEV----LM-PCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYF-LV 80 (162)
Q Consensus 7 ~~~~eal~~l~~~~~~~DlvllD~----~m-p~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~-l~ 80 (162)
.+.++|....+ ..+|.|++.- .+ .+...++.+..|+... ...+|||+-..-....++.+++..||+.. +-
T Consensus 230 ~~~~dA~~a~~---~G~d~I~vsnhGGr~ld~~~~~~~~l~~i~~a~-~~~i~vi~dGGIr~g~Di~kaLalGA~~V~iG 305 (351)
T cd04737 230 QSPEDADVAIN---AGADGIWVSNHGGRQLDGGPASFDSLPEIAEAV-NHRVPIIFDSGVRRGEHVFKALASGADAVAVG 305 (351)
T ss_pred CCHHHHHHHHH---cCCCEEEEeCCCCccCCCCchHHHHHHHHHHHh-CCCCeEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 45666655544 4788888731 11 1223467777776532 14699999999999999999999999987 44
Q ss_pred CCC
Q 044790 81 KPI 83 (162)
Q Consensus 81 KP~ 83 (162)
.|+
T Consensus 306 r~~ 308 (351)
T cd04737 306 RPV 308 (351)
T ss_pred HHH
Confidence 443
No 461
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=46.81 E-value=1.3e+02 Score=22.85 Aligned_cols=67 Identities=18% Similarity=0.206 Sum_probs=43.5
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 044790 23 IDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVWRKC 99 (162)
Q Consensus 23 ~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~~ 99 (162)
.|++|+-... +.-|..+++.+. ..+|+|+... .. ..+.+..+..+++.++.+.+++...|..++...
T Consensus 279 ad~~i~~~~~-~~~~~~~~Ea~~-----~G~pvI~~~~-~~---~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~ 345 (377)
T cd03798 279 ADVFVLPSLR-EGFGLVLLEAMA-----CGLPVVATDV-GG---IPEIITDGENGLLVPPGDPEALAEAILRLLADP 345 (377)
T ss_pred cCeeecchhh-ccCChHHHHHHh-----cCCCEEEecC-CC---hHHHhcCCcceeEECCCCHHHHHHHHHHHhcCc
Confidence 4665543222 333455666654 4678875432 22 334466777789999999999999999987654
No 462
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=46.78 E-value=1.5e+02 Score=23.57 Aligned_cols=52 Identities=19% Similarity=0.339 Sum_probs=42.5
Q ss_pred CCcEEEEecCCCHHHHHHHHHcCCceEEe--CCCCHHHHHHHHHHHHHhccCCC
Q 044790 52 NIPVIMMSSHDSMSIVFKCLSKGAVYFLV--KPIRKNELQNLWQHVWRKCHSSS 103 (162)
Q Consensus 52 ~~piI~lt~~~~~~~~~~a~~~Ga~~~l~--KP~~~~~L~~~i~~~l~~~~~~~ 103 (162)
.+||.+=..+.+.+.+.+|++.|+.-+.. |..+.++.++..+++....+...
T Consensus 77 ~vPV~lHLDH~~~~~i~~ai~~GftSVm~d~S~l~~eEni~~t~~v~~~a~~~g 130 (293)
T PRK07315 77 TVPVAIHLDHGHYEDALECIEVGYTSIMFDGSHLPVEENLKLAKEVVEKAHAKG 130 (293)
T ss_pred CCcEEEECCCCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 67999999998878999999999987765 46788999988888887665433
No 463
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=46.77 E-value=75 Score=28.12 Aligned_cols=74 Identities=8% Similarity=0.127 Sum_probs=42.8
Q ss_pred CccEEEEcC-CCCCCCHH-HHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 044790 22 QIDLVLTEV-LMPCLSGI-GLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVWRKC 99 (162)
Q Consensus 22 ~~DlvllD~-~mp~~~g~-~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~~ 99 (162)
.+-|||+|= ++-....+ .+++.|.+.. ..+.+|++|. ....+...+..-+.-|-.+|++.+++...|+.++...
T Consensus 119 ~~kVIIIDEad~Lt~~a~naLLk~LEEP~--~~~ifILaTt--~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~e 194 (624)
T PRK14959 119 RYKVFIIDEAHMLTREAFNALLKTLEEPP--ARVTFVLATT--EPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGRE 194 (624)
T ss_pred CceEEEEEChHhCCHHHHHHHHHHhhccC--CCEEEEEecC--ChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHc
Confidence 467888873 22222222 2344443322 3444444443 3333444455556678889999999999999877654
No 464
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=46.77 E-value=1.3e+02 Score=23.04 Aligned_cols=71 Identities=14% Similarity=0.168 Sum_probs=48.0
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCC--C----HHHHHHHHHcCCceEE-----eCCCCHHHHH
Q 044790 21 DQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHD--S----MSIVFKCLSKGAVYFL-----VKPIRKNELQ 89 (162)
Q Consensus 21 ~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~--~----~~~~~~a~~~Ga~~~l-----~KP~~~~~L~ 89 (162)
...|.|-+.+. .+.+.++++... ..+||+++..-. . .+.+.++++.|++++. .+.-++.+..
T Consensus 168 ~GADyikt~~~----~~~~~l~~~~~~---~~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~~~dp~~~~ 240 (258)
T TIGR01949 168 LGADIVKTPYT----GDIDSFRDVVKG---CPAPVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQHDDPVGIT 240 (258)
T ss_pred HCCCEEeccCC----CCHHHHHHHHHh---CCCcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhcCCCHHHHH
Confidence 56898888642 367888888654 368998776554 2 4566777899999763 3445666676
Q ss_pred HHHHHHHHh
Q 044790 90 NLWQHVWRK 98 (162)
Q Consensus 90 ~~i~~~l~~ 98 (162)
..+++++..
T Consensus 241 ~~l~~~i~~ 249 (258)
T TIGR01949 241 KAVCKIVHE 249 (258)
T ss_pred HHHHHHHhC
Confidence 667666544
No 465
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=46.72 E-value=59 Score=26.67 Aligned_cols=39 Identities=13% Similarity=0.076 Sum_probs=0.0
Q ss_pred HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 38 IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 38 ~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|+.+++||+. ...|||+- .--..+.+.++.+.|+++++.
T Consensus 225 w~~i~~ir~~---~~~pviiK-gV~~~eda~~a~~~G~d~I~V 263 (361)
T cd04736 225 WQDLRWLRDL---WPHKLLVK-GIVTAEDAKRCIELGADGVIL 263 (361)
T ss_pred HHHHHHHHHh---CCCCEEEe-cCCCHHHHHHHHHCCcCEEEE
No 466
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=46.70 E-value=62 Score=28.99 Aligned_cols=75 Identities=7% Similarity=0.124 Sum_probs=47.9
Q ss_pred CCccEEEEcC-CCCCCCHHHH-HHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHHHh
Q 044790 21 DQIDLVLTEV-LMPCLSGIGL-LRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVWRK 98 (162)
Q Consensus 21 ~~~DlvllD~-~mp~~~g~~~-~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 98 (162)
.++-|+|+|- +|-....+.. ++.|-+-+ .++.+|++|. +...+...+..-|.-|-.|+++.+++...|++++..
T Consensus 123 gr~KViIIDEah~Ls~~AaNALLKTLEEPP--~~v~FILaTt--ep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~ 198 (700)
T PRK12323 123 GRFKVYMIDEVHMLTNHAFNAMLKTLEEPP--EHVKFILATT--DPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGE 198 (700)
T ss_pred CCceEEEEEChHhcCHHHHHHHHHhhccCC--CCceEEEEeC--ChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHH
Confidence 3577899874 3322333333 33332222 4566776665 344555666666778888999999999999988875
Q ss_pred c
Q 044790 99 C 99 (162)
Q Consensus 99 ~ 99 (162)
.
T Consensus 199 E 199 (700)
T PRK12323 199 E 199 (700)
T ss_pred c
Confidence 4
No 467
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=46.38 E-value=78 Score=27.16 Aligned_cols=76 Identities=9% Similarity=0.150 Sum_probs=48.2
Q ss_pred CCccEEEEcC-CCCCCCHHHH-HHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHHHh
Q 044790 21 DQIDLVLTEV-LMPCLSGIGL-LRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVWRK 98 (162)
Q Consensus 21 ~~~DlvllD~-~mp~~~g~~~-~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 98 (162)
.++.++|+|= +|-..+.+.. ++.|..-+ .++.+|++|. +...+...+..-+.-|-.||++..++...++.++..
T Consensus 118 ~~~kV~iIDE~~~ls~~a~naLLk~LEepp--~~~~fIlatt--d~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~ 193 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSFNALLKTLEEPP--SHVKFILATT--DHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKE 193 (509)
T ss_pred CCcEEEEEEChHhcCHHHHHHHHHHHhccC--CCeEEEEEEC--ChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHH
Confidence 3577999874 3333334443 34443333 4666776663 344444445666677778999999999999998887
Q ss_pred cc
Q 044790 99 CH 100 (162)
Q Consensus 99 ~~ 100 (162)
..
T Consensus 194 eg 195 (509)
T PRK14958 194 EN 195 (509)
T ss_pred cC
Confidence 53
No 468
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=46.32 E-value=1.2e+02 Score=22.49 Aligned_cols=60 Identities=10% Similarity=0.112 Sum_probs=39.4
Q ss_pred HHHHHhhCCCccEEEEcCCC---CC-CCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEE
Q 044790 13 WKILEDLMDQIDLVLTEVLM---PC-LSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFL 79 (162)
Q Consensus 13 l~~l~~~~~~~DlvllD~~m---p~-~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l 79 (162)
++.+.+ ...|+|++|..+ |. ..-.++++.+++. +.++++. .....+.+..+.+.|++-+.
T Consensus 81 v~~a~~--aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~---~~i~vi~--~v~t~ee~~~a~~~G~d~i~ 144 (221)
T PRK01130 81 VDALAA--AGADIIALDATLRPRPDGETLAELVKRIKEY---PGQLLMA--DCSTLEEGLAAQKLGFDFIG 144 (221)
T ss_pred HHHHHH--cCCCEEEEeCCCCCCCCCCCHHHHHHHHHhC---CCCeEEE--eCCCHHHHHHHHHcCCCEEE
Confidence 344444 578999999865 32 4556778888763 3555553 33456777889999987553
No 469
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=45.95 E-value=64 Score=22.86 Aligned_cols=73 Identities=19% Similarity=0.336 Sum_probs=43.7
Q ss_pred HHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEE-EEecCCCHHHHHHHHHcCCceEEeCCCCHHHHH
Q 044790 11 QAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVI-MMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQ 89 (162)
Q Consensus 11 eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI-~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~ 89 (162)
...+++++ .+||+||+=.-+|..-. +..+|.....+.+|++ ++|.... .-...+.-++|-|+.-- +++.
T Consensus 80 ~l~~~l~~--~~PD~IIsThp~~~~~~---l~~lk~~~~~~~~p~~tvvTD~~~--~H~~W~~~~~D~y~Vas---e~~~ 149 (169)
T PF06925_consen 80 RLIRLLRE--FQPDLIISTHPFPAQVP---LSRLKRRGRLPNIPVVTVVTDFDT--VHPFWIHPGVDRYFVAS---EEVK 149 (169)
T ss_pred HHHHHHhh--cCCCEEEECCcchhhhH---HHHHHHhhcccCCcEEEEEcCCCC--CCcCeecCCCCEEEECC---HHHH
Confidence 34556677 89999999887764221 4445544433467865 6665421 12345677899998653 4554
Q ss_pred HHHH
Q 044790 90 NLWQ 93 (162)
Q Consensus 90 ~~i~ 93 (162)
+.+.
T Consensus 150 ~~l~ 153 (169)
T PF06925_consen 150 EELI 153 (169)
T ss_pred HHHH
Confidence 4443
No 470
>cd08605 GDPD_GDE5_like_1_plant Glycerophosphodiester phosphodiesterase domain of uncharacterized plant glycerophosphodiester phosphodiesterase-like proteins similar to mammalian GDE5. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized plant glycerophosphodiester phosphodiesterase (GP-PDE)-like proteins. Members in this family show very high sequence homology to mammalian glycerophosphodiester phosphodiesterase GDE5 and are distantly related to plant GP-PDEs.
Probab=45.73 E-value=59 Score=25.22 Aligned_cols=30 Identities=10% Similarity=0.063 Sum_probs=23.8
Q ss_pred CCCcEEEEec-CCCHHHHHHHHHcCCceEEe
Q 044790 51 KNIPVIMMSS-HDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 51 ~~~piI~lt~-~~~~~~~~~a~~~Ga~~~l~ 80 (162)
..++|.+.|. .++.+.+.++++.|++++++
T Consensus 249 ~Gl~v~vWTv~~n~~~~~~~l~~~GVdgIiT 279 (282)
T cd08605 249 SGLELGTYGKLNNDAEAVERQADLGVDGVIV 279 (282)
T ss_pred cCcEEEEeCCCCCCHHHHHHHHHcCCCEEEe
Confidence 4678888874 46688888999999999886
No 471
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6.2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....
Probab=45.73 E-value=95 Score=22.13 Aligned_cols=56 Identities=16% Similarity=0.185 Sum_probs=31.6
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCCCCCC-HHH---HHHHHHccC-CCCCCcEEE-EecCCCH
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLMPCLS-GIG---LLRKIMNHK-TCKNIPVIM-MSSHDSM 64 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~mp~~~-g~~---~~~~ir~~~-~~~~~piI~-lt~~~~~ 64 (162)
...++++.+.+. ....+||+|+...-.. -.. +++.++... ....+|||+ ++.....
T Consensus 60 ~~~~~l~~~~~D-p~v~vIlvd~~~G~g~~~~~A~~l~~a~~~~~~~~~~~pvVa~v~GT~~d 121 (153)
T PF00549_consen 60 TRNEALEIEAAD-PEVKVILVDIVGGIGSCEDPAAGLIPAIKEAKAEGRKKPVVARVCGTNAD 121 (153)
T ss_dssp HHHHHHHHHHTS-TTESEEEEEEESSSSSHHHHHHHHHHHHSHCTHTTT-SEEEEEEESTTCH
T ss_pred HHHHHHHHHhcC-CCccEEEEEeccccCchHHHHHHHHHHHHhccccCCCCcEEEEeeeecCC
Confidence 456777777662 5699999999987333 333 333333211 114678776 4444444
No 472
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=45.64 E-value=1.1e+02 Score=23.45 Aligned_cols=70 Identities=13% Similarity=0.047 Sum_probs=47.2
Q ss_pred CccEEEEcCCC--CCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHH
Q 044790 22 QIDLVLTEVLM--PCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQ 93 (162)
Q Consensus 22 ~~DlvllD~~m--p~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~ 93 (162)
.+.++.++.-- ....-.++++.+++.- ..+|+++=..-.+.+.+.+++..||+..+.-..-.+.....++
T Consensus 154 g~~~vYle~gs~~g~~~~~e~I~~v~~~~--~~~pvivGGGIrs~e~a~~~l~~GAD~VVVGSai~~d~~~~~~ 225 (232)
T PRK04169 154 GMPIVYLEYGGGAGDPVPPEMVKAVKKAL--DITPLIYGGGIRSPEQARELMAAGADTIVVGNIIEEDPKKTVK 225 (232)
T ss_pred CCCeEEEECCCCCCCCCCHHHHHHHHHhc--CCCcEEEECCCCCHHHHHHHHHhCCCEEEEChHHhhCHHHHHH
Confidence 45677777542 2223378899998753 2238887777778888889999999999987654444333333
No 473
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=45.63 E-value=1.1e+02 Score=25.91 Aligned_cols=74 Identities=9% Similarity=0.118 Sum_probs=44.4
Q ss_pred CccEEEEcC-CCCCCCHHH-HHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 044790 22 QIDLVLTEV-LMPCLSGIG-LLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVWRKC 99 (162)
Q Consensus 22 ~~DlvllD~-~mp~~~g~~-~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~~ 99 (162)
.+.+||+|= ++-....+. +++.+...+ ..+.+|+.+. .+..+..++..-+.-|-.+|++.+++...++.++...
T Consensus 117 ~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~--~~vv~Ilatt--n~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~e 192 (472)
T PRK14962 117 KYKVYIIDEVHMLTKEAFNALLKTLEEPP--SHVVFVLATT--NLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAE 192 (472)
T ss_pred CeEEEEEEChHHhHHHHHHHHHHHHHhCC--CcEEEEEEeC--ChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHc
Confidence 457899983 221111122 334443322 2333333333 3455667777777788889999999999999988654
No 474
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=45.41 E-value=1.2e+02 Score=22.41 Aligned_cols=62 Identities=11% Similarity=0.103 Sum_probs=39.4
Q ss_pred HHHHHhhCCCccEEEEcCCC---CC-CCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeC
Q 044790 13 WKILEDLMDQIDLVLTEVLM---PC-LSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVK 81 (162)
Q Consensus 13 l~~l~~~~~~~DlvllD~~m---p~-~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~K 81 (162)
++.+.+ ...|+|++|... |. ..-.++++.+++.. .+++++ .....+.+..+.+.|++-+...
T Consensus 85 ~~~a~~--aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g---~~~iiv--~v~t~~ea~~a~~~G~d~i~~~ 150 (219)
T cd04729 85 VDALAA--AGADIIALDATDRPRPDGETLAELIKRIHEEY---NCLLMA--DISTLEEALNAAKLGFDIIGTT 150 (219)
T ss_pred HHHHHH--cCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHh---CCeEEE--ECCCHHHHHHHHHcCCCEEEcc
Confidence 355555 577899998755 43 35566777776632 355543 3345677788899998866443
No 475
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=45.35 E-value=1.4e+02 Score=22.97 Aligned_cols=68 Identities=21% Similarity=0.166 Sum_probs=44.0
Q ss_pred ccEEEEcCC-CCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHHHh
Q 044790 23 IDLVLTEVL-MPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVWRK 98 (162)
Q Consensus 23 ~DlvllD~~-mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 98 (162)
.|++++=.. ....-|..+++.+. ..+|||..-.....+.+.. .|-.+++..+-+.+++...|..++..
T Consensus 264 ad~~i~ps~~~~e~~g~~~~Ea~~-----~g~Pvi~~~~~~~~~~i~~---~~~~g~~~~~~d~~~~~~~i~~l~~~ 332 (357)
T cd03795 264 CDVFVFPSVERSEAFGIVLLEAMA-----FGKPVISTEIGTGGSYVNL---HGVTGLVVPPGDPAALAEAIRRLLED 332 (357)
T ss_pred CCEEEeCCcccccccchHHHHHHH-----cCCCEEecCCCCchhHHhh---CCCceEEeCCCCHHHHHHHHHHHHHC
Confidence 466665322 12344666777764 3678886433333332222 47889999999999999999998764
No 476
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=45.08 E-value=39 Score=24.29 Aligned_cols=39 Identities=10% Similarity=0.113 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCce
Q 044790 35 LSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVY 77 (162)
Q Consensus 35 ~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~ 77 (162)
.+-.++++.|+. ..+++.++|+.........+...|..+
T Consensus 130 ~~~~~~l~~L~~----~Gi~~~i~TGD~~~~a~~~~~~lgi~~ 168 (215)
T PF00702_consen 130 PGAKEALQELKE----AGIKVAILTGDNESTASAIAKQLGIFD 168 (215)
T ss_dssp TTHHHHHHHHHH----TTEEEEEEESSEHHHHHHHHHHTTSCS
T ss_pred hhhhhhhhhhhc----cCcceeeeecccccccccccccccccc
Confidence 346788899987 367999999877777777777899976
No 477
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=44.97 E-value=1.2e+02 Score=21.99 Aligned_cols=80 Identities=19% Similarity=0.299 Sum_probs=47.1
Q ss_pred HHHHHHHHhhCCCccEEEEcCCC----CCC-CHHHHHHHHHccCCCCCCcE-E-EEecCCCHHHHHHHHHcCCceEEeCC
Q 044790 10 LQAWKILEDLMDQIDLVLTEVLM----PCL-SGIGLLRKIMNHKTCKNIPV-I-MMSSHDSMSIVFKCLSKGAVYFLVKP 82 (162)
Q Consensus 10 ~eal~~l~~~~~~~DlvllD~~m----p~~-~g~~~~~~ir~~~~~~~~pi-I-~lt~~~~~~~~~~a~~~Ga~~~l~KP 82 (162)
.+.++.+.+ ...+.|=+|+.- |.. -|++.+++|+... ..++ + +++ .+..+.+..+.+.|++..+.--
T Consensus 15 ~~~~~~~~~--~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~---~~~~~v~l~~-~d~~~~~~~~~~~g~dgv~vh~ 88 (211)
T cd00429 15 GEELKRLEE--AGADWIHIDVMDGHFVPNLTFGPPVVKALRKHT---DLPLDVHLMV-ENPERYIEAFAKAGADIITFHA 88 (211)
T ss_pred HHHHHHHHH--cCCCEEEEecccCCCCCccccCHHHHHHHHhhC---CCcEEEEeee-CCHHHHHHHHHHcCCCEEEECc
Confidence 345566666 568888776422 111 4568889998642 2333 2 444 3445668888899999975554
Q ss_pred CCHHHHHHHHHHH
Q 044790 83 IRKNELQNLWQHV 95 (162)
Q Consensus 83 ~~~~~L~~~i~~~ 95 (162)
...++....++.+
T Consensus 89 ~~~~~~~~~~~~~ 101 (211)
T cd00429 89 EATDHLHRTIQLI 101 (211)
T ss_pred cchhhHHHHHHHH
Confidence 3334544554443
No 478
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=44.79 E-value=2e+02 Score=24.61 Aligned_cols=71 Identities=13% Similarity=0.079 Sum_probs=43.4
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCC------CHHHHHHHHHH
Q 044790 21 DQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPI------RKNELQNLWQH 94 (162)
Q Consensus 21 ~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~------~~~~L~~~i~~ 94 (162)
-....|++-. .+|.... ++.+.. +.+||+.+|... .....-++-.|+..|+.++. +.+++......
T Consensus 374 l~akaIVv~T----~SG~TA~-~lS~~R--P~~pIiavT~~~-~~~r~l~l~~GV~p~~~~~~~~~~~~~~~~~~~~~~~ 445 (480)
T cd00288 374 LGAKAIVVLT----TSGRTAR-LVSKYR--PNAPIIAVTRNE-QTARQLHLYRGVYPVLFEEPKPGWQEDTDARLKAAVN 445 (480)
T ss_pred cCCCEEEEEC----CCcHHHH-HHHhhC--CCCCEEEEcCCH-HHhhheeeccCcEEEEecccccccCCCHHHHHHHHHH
Confidence 3455555542 4555443 443322 679999999753 33444566789999988764 55666666655
Q ss_pred HHHhc
Q 044790 95 VWRKC 99 (162)
Q Consensus 95 ~l~~~ 99 (162)
.+...
T Consensus 446 ~~~~~ 450 (480)
T cd00288 446 VAKEK 450 (480)
T ss_pred HHHHc
Confidence 55543
No 479
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=44.75 E-value=1.7e+02 Score=23.77 Aligned_cols=42 Identities=19% Similarity=0.177 Sum_probs=32.3
Q ss_pred HHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceE-EeCC
Q 044790 39 GLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYF-LVKP 82 (162)
Q Consensus 39 ~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~-l~KP 82 (162)
+.+..+++.. ..+|||....-.....+.+++..||+.+ +..|
T Consensus 250 ~~l~~i~~~~--~~ipvia~GGI~~~~dv~k~l~~GAd~v~ig~~ 292 (352)
T PRK05437 250 QSLLEARSLL--PDLPIIASGGIRNGLDIAKALALGADAVGMAGP 292 (352)
T ss_pred HHHHHHHHhc--CCCeEEEECCCCCHHHHHHHHHcCCCEEEEhHH
Confidence 3455555432 4789999999999999999999999988 4454
No 480
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=44.55 E-value=27 Score=23.88 Aligned_cols=26 Identities=23% Similarity=0.287 Sum_probs=22.4
Q ss_pred EEEecCCCHHHHHHHHHcCCceEEeC
Q 044790 56 IMMSSHDSMSIVFKCLSKGAVYFLVK 81 (162)
Q Consensus 56 I~lt~~~~~~~~~~a~~~Ga~~~l~K 81 (162)
+.+++.-++..+.+||+.|||+.+.-
T Consensus 34 vpC~Grv~~~~il~Af~~GADGV~V~ 59 (124)
T PF02662_consen 34 VPCSGRVDPEFILRAFEKGADGVLVA 59 (124)
T ss_pred ccCCCccCHHHHHHHHHcCCCEEEEe
Confidence 45677789999999999999999883
No 481
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=44.53 E-value=68 Score=20.62 Aligned_cols=36 Identities=8% Similarity=0.100 Sum_probs=22.3
Q ss_pred CHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCC
Q 044790 36 SGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGA 75 (162)
Q Consensus 36 ~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga 75 (162)
.-.++++.++.. ..+++++|+..........-..|.
T Consensus 28 ~~~~~l~~l~~~----g~~i~ivS~~~~~~~~~~~~~~~~ 63 (139)
T cd01427 28 GVKEALKELKEK----GIKLALATNKSRREVLELLEELGL 63 (139)
T ss_pred CHHHHHHHHHHC----CCeEEEEeCchHHHHHHHHHHcCC
Confidence 346778888763 578898998764444333334554
No 482
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=44.50 E-value=1.4e+02 Score=22.57 Aligned_cols=66 Identities=18% Similarity=0.142 Sum_probs=43.1
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHHHh
Q 044790 23 IDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVWRK 98 (162)
Q Consensus 23 ~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 98 (162)
.|++|+=... ..-|..+++.+. ..+|||....... .+.+..|..+++..+.+.+++.+.|..++..
T Consensus 264 adi~i~ps~~-e~~~~~~~Ea~~-----~G~Pvi~s~~~~~----~~~i~~~~~g~~~~~~~~~~~~~~i~~l~~~ 329 (359)
T cd03808 264 ADVFVLPSYR-EGLPRVLLEAMA-----MGRPVIATDVPGC----REAVIDGVNGFLVPPGDAEALADAIERLIED 329 (359)
T ss_pred ccEEEecCcc-cCcchHHHHHHH-----cCCCEEEecCCCc----hhhhhcCcceEEECCCCHHHHHHHHHHHHhC
Confidence 4666654333 333566677664 4678886433222 3345557789999999999999999987653
No 483
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=44.37 E-value=1.3e+02 Score=22.42 Aligned_cols=84 Identities=10% Similarity=0.133 Sum_probs=54.1
Q ss_pred EEcCHHHHHHHHHhhCCCccEEEEcCCCC--------CCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCc
Q 044790 5 AVENGLQAWKILEDLMDQIDLVLTEVLMP--------CLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAV 76 (162)
Q Consensus 5 ~a~~~~eal~~l~~~~~~~DlvllD~~mp--------~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~ 76 (162)
.+++..++.+.. + ..+|.|++.-..| ..-|++.++.+.+.. ..+||+.+.+- ..+.+.+.+..|++
T Consensus 108 S~H~~~e~~~A~-~--~gaDYi~lgpvf~T~tK~~~~~~~G~~~l~~~~~~~--~~~PV~AiGGI-~~~ni~~l~~~Ga~ 181 (211)
T PRK03512 108 STHDDMEIDVAL-A--ARPSYIALGHVFPTQTKQMPSAPQGLAQLARHVERL--ADYPTVAIGGI-SLERAPAVLATGVG 181 (211)
T ss_pred eCCCHHHHHHHh-h--cCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhc--CCCCEEEECCC-CHHHHHHHHHcCCC
Confidence 566777765543 3 4789999876432 124677777765432 36899999875 46777888899998
Q ss_pred eEE-----eCCCCHHHHHHHHHH
Q 044790 77 YFL-----VKPIRKNELQNLWQH 94 (162)
Q Consensus 77 ~~l-----~KP~~~~~L~~~i~~ 94 (162)
++- .+..++.+....+..
T Consensus 182 GiAvisai~~~~d~~~~~~~l~~ 204 (211)
T PRK03512 182 SIAVVSAITQAADWRAATAQLLE 204 (211)
T ss_pred EEEEhhHhhCCCCHHHHHHHHHH
Confidence 873 344444444444433
No 484
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=44.37 E-value=1.2e+02 Score=23.78 Aligned_cols=41 Identities=20% Similarity=0.233 Sum_probs=30.6
Q ss_pred HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEE
Q 044790 38 IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFL 79 (162)
Q Consensus 38 ~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l 79 (162)
+..++.+++.- ..++|||.+.+-...+++.+.+.+||+..-
T Consensus 231 L~~V~~~~~~~-~~~i~Iig~GGI~s~~da~e~l~aGA~~Vq 271 (295)
T PF01180_consen 231 LRWVRELRKAL-GQDIPIIGVGGIHSGEDAIEFLMAGASAVQ 271 (295)
T ss_dssp HHHHHHHHHHT-TTSSEEEEESS--SHHHHHHHHHHTESEEE
T ss_pred HHHHHHHHhcc-ccceEEEEeCCcCCHHHHHHHHHhCCCHhe
Confidence 44566666543 147999999999999999999999999763
No 485
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=44.17 E-value=1.1e+02 Score=22.36 Aligned_cols=52 Identities=17% Similarity=0.153 Sum_probs=36.1
Q ss_pred CCccEEEEcCCCCC-------CCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcC-CceE
Q 044790 21 DQIDLVLTEVLMPC-------LSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKG-AVYF 78 (162)
Q Consensus 21 ~~~DlvllD~~mp~-------~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~G-a~~~ 78 (162)
...|.+++|..-+. .-+|++++.++ ..+|+++...- .++.+.+++..+ ++++
T Consensus 119 ~~aD~il~dt~~~~~~Gg~g~~~~~~~l~~~~-----~~~PvilaGGI-~~~Nv~~~i~~~~~~gv 178 (203)
T cd00405 119 GEVDAILLDSKSGGGGGGTGKTFDWSLLRGLA-----SRKPVILAGGL-TPDNVAEAIRLVRPYGV 178 (203)
T ss_pred ccCCEEEEcCCCCCCCCCCcceEChHHhhccc-----cCCCEEEECCC-ChHHHHHHHHhcCCCEE
Confidence 45799999986553 23456666554 36798877765 777788888877 6655
No 486
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=44.13 E-value=1.5e+02 Score=23.23 Aligned_cols=73 Identities=11% Similarity=0.146 Sum_probs=42.6
Q ss_pred ccEEEEcCCCCCCC--HHHHH-HHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 044790 23 IDLVLTEVLMPCLS--GIGLL-RKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVWRKC 99 (162)
Q Consensus 23 ~DlvllD~~mp~~~--g~~~~-~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~~ 99 (162)
+.+||+|-. ..++ ....+ +.+.... ..+.+|+++... ......+..-+..+..+|.+.+++...|+..+...
T Consensus 126 ~~vlilDe~-~~l~~~~~~~L~~~le~~~--~~~~~Il~~~~~--~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~ 200 (337)
T PRK12402 126 YKTILLDNA-EALREDAQQALRRIMEQYS--RTCRFIIATRQP--SKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAE 200 (337)
T ss_pred CcEEEEeCc-ccCCHHHHHHHHHHHHhcc--CCCeEEEEeCCh--hhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHc
Confidence 568888752 2222 23333 3333322 345566555432 23334555556678889999999999999887764
Q ss_pred c
Q 044790 100 H 100 (162)
Q Consensus 100 ~ 100 (162)
.
T Consensus 201 ~ 201 (337)
T PRK12402 201 G 201 (337)
T ss_pred C
Confidence 3
No 487
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=44.03 E-value=49 Score=19.94 Aligned_cols=51 Identities=14% Similarity=0.141 Sum_probs=32.4
Q ss_pred EEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecC
Q 044790 5 AVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSH 61 (162)
Q Consensus 5 ~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~ 61 (162)
.|.....|.+++++ ..++.-..|+.... +..+.++.......+|+|++-..
T Consensus 8 ~Cp~C~~a~~~L~~--~~i~~~~~di~~~~----~~~~~~~~~~g~~~vP~i~i~g~ 58 (79)
T TIGR02181 8 YCPYCTRAKALLSS--KGVTFTEIRVDGDP----ALRDEMMQRSGRRTVPQIFIGDV 58 (79)
T ss_pred CChhHHHHHHHHHH--cCCCcEEEEecCCH----HHHHHHHHHhCCCCcCEEEECCE
Confidence 35567788888888 67777777776432 23334433222368999988753
No 488
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=43.86 E-value=1.6e+02 Score=23.28 Aligned_cols=86 Identities=13% Similarity=0.124 Sum_probs=57.4
Q ss_pred EcCHHHHHHHHHhhCCCccEEEEcCC--------CCCCCHHHHHHHHHccCCCCCCcEEEEecCC-CHHHHHHHHHcCCc
Q 044790 6 VENGLQAWKILEDLMDQIDLVLTEVL--------MPCLSGIGLLRKIMNHKTCKNIPVIMMSSHD-SMSIVFKCLSKGAV 76 (162)
Q Consensus 6 a~~~~eal~~l~~~~~~~DlvllD~~--------mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~-~~~~~~~a~~~Ga~ 76 (162)
.++.++|.+++++ ..+|.+=+.+- -|..=-+++++.|++. -.+|+++=.+.. ..+.+.++...|+.
T Consensus 157 ~T~peea~~Fv~~--TgvD~LAvaiGt~HG~y~~~p~~Ld~~~L~~I~~~---v~vPLVlHGgSG~~~e~~~~ai~~Gi~ 231 (288)
T TIGR00167 157 YTDPEEAKEFVKL--TGVDSLAAAIGNVHGVYKGEPKGLDFERLEEIQKY---VNLPLVLHGGSGIPDEEIKKAISLGVV 231 (288)
T ss_pred CCCHHHHHHHHhc--cCCcEEeeccCccccccCCCCCccCHHHHHHHHHH---hCCCEEEeCCCCCCHHHHHHHHHcCCe
Confidence 6788999999998 88999888773 1331137888999775 378988777655 44678889999977
Q ss_pred eEEeCCCCHHHHHHHHHHHH
Q 044790 77 YFLVKPIRKNELQNLWQHVW 96 (162)
Q Consensus 77 ~~l~KP~~~~~L~~~i~~~l 96 (162)
.+=.-..-.......++..+
T Consensus 232 KiNi~T~l~~a~~~~~~~~~ 251 (288)
T TIGR00167 232 KVNIDTELQIAFAAAVRNYY 251 (288)
T ss_pred EEEcChHHHHHHHHHHHHHH
Confidence 66333222233344444443
No 489
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=43.78 E-value=98 Score=20.75 Aligned_cols=63 Identities=13% Similarity=0.098 Sum_probs=36.4
Q ss_pred EEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHHHh
Q 044790 25 LVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVWRK 98 (162)
Q Consensus 25 lvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 98 (162)
.|+.-...-...|.++...++.. ..|.+++....+. +..+..-+.-+.++++|...|+.++..
T Consensus 53 fv~w~~dv~~~eg~~la~~l~~~----~~P~~~~l~~~~~-------~~~vv~~i~G~~~~~~ll~~L~~~~~~ 115 (116)
T cd02991 53 MLFWACSVAKPEGYRVSQALRER----TYPFLAMIMLKDN-------RMTIVGRLEGLIQPEDLINRLTFIMDA 115 (116)
T ss_pred EEEEEEecCChHHHHHHHHhCCC----CCCEEEEEEecCC-------ceEEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 45544444455678887777653 3454444322111 122333455678999999999987653
No 490
>PRK14048 ferrichrome/ferrioxamine B periplasmic transporter; Provisional
Probab=43.75 E-value=68 Score=25.92 Aligned_cols=79 Identities=8% Similarity=0.148 Sum_probs=40.6
Q ss_pred HHHHHhhCCCccEEEEcCCC-CCCCHHHHHHHHHccCCCCCCcEEEEecCC-CHHHHHHHHHcCCceEEeCCCCHHHHHH
Q 044790 13 WKILEDLMDQIDLVLTEVLM-PCLSGIGLLRKIMNHKTCKNIPVIMMSSHD-SMSIVFKCLSKGAVYFLVKPIRKNELQN 90 (162)
Q Consensus 13 l~~l~~~~~~~DlvllD~~m-p~~~g~~~~~~ir~~~~~~~~piI~lt~~~-~~~~~~~a~~~Ga~~~l~KP~~~~~L~~ 90 (162)
+|.+-. .+|||||+.... ....+.+..+.+.+ ..+|++++.... ..+...+.+.. .-..+-|.-..+++..
T Consensus 114 ~E~Ila--l~PDLVi~~~~~~~~~~~~~~~~~L~~----~Gipvv~~~~~~~~~~~~~~~i~~-lG~i~g~ee~A~~li~ 186 (374)
T PRK14048 114 FETILT--LKADLAILANWQADTEAGQRAIEYLES----IGVPVIVVDFNNEALKNTPDNMRL-LGKVFEREEQAEDFAR 186 (374)
T ss_pred HHHHhh--cCCCEEEecCcccccccchhHHHHHHH----CCCCEEEEeCCcchhhhhHHHHHH-HHHHhCCHHHHHHHHH
Confidence 344555 689999975322 22233456677755 357888885322 12222222211 1123445555666666
Q ss_pred HHHHHHHh
Q 044790 91 LWQHVWRK 98 (162)
Q Consensus 91 ~i~~~l~~ 98 (162)
.++..+..
T Consensus 187 ~~~~~i~~ 194 (374)
T PRK14048 187 FYEERLAR 194 (374)
T ss_pred HHHHHHHH
Confidence 66655543
No 491
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=43.74 E-value=92 Score=26.24 Aligned_cols=73 Identities=5% Similarity=0.159 Sum_probs=45.8
Q ss_pred CccEEEEcC--CCCCCCHHH-HHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHHHh
Q 044790 22 QIDLVLTEV--LMPCLSGIG-LLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVWRK 98 (162)
Q Consensus 22 ~~DlvllD~--~mp~~~g~~-~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 98 (162)
.+-+||+|- .|.. .+.+ +++.|...+ ..+.+|+++ .....+...+..-+.-+-.+|++.+++...|..++..
T Consensus 121 ~~kvvIIdead~lt~-~~~n~LLk~lEep~--~~~~~Il~t--~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~ 195 (451)
T PRK06305 121 RYKIYIIDEVHMLTK-EAFNSLLKTLEEPP--QHVKFFLAT--TEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQ 195 (451)
T ss_pred CCEEEEEecHHhhCH-HHHHHHHHHhhcCC--CCceEEEEe--CChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHH
Confidence 467888874 2211 1233 344444322 355555555 3345566667777778888999999999999988765
Q ss_pred c
Q 044790 99 C 99 (162)
Q Consensus 99 ~ 99 (162)
.
T Consensus 196 e 196 (451)
T PRK06305 196 E 196 (451)
T ss_pred c
Confidence 4
No 492
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=43.73 E-value=1.3e+02 Score=21.98 Aligned_cols=70 Identities=11% Similarity=0.073 Sum_probs=41.3
Q ss_pred CCccEEEEcCCC----CCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe-----CCCCHHHHHHH
Q 044790 21 DQIDLVLTEVLM----PCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV-----KPIRKNELQNL 91 (162)
Q Consensus 21 ~~~DlvllD~~m----p~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~-----KP~~~~~L~~~ 91 (162)
..+|+|-+.-.- -...+++.++++++.. +.. .|++.+.-..+.+..+++.|++.++. +.-++.+....
T Consensus 125 ~g~d~v~~~pg~~~~~~~~~~~~~i~~l~~~~--~~~-~i~v~GGI~~~n~~~~~~~Ga~~v~vGsai~~~~d~~~~~~~ 201 (206)
T TIGR03128 125 LGADYIGVHTGLDEQAKGQNPFEDLQTILKLV--KEA-RVAVAGGINLDTIPDVIKLGPDIVIVGGAITKAADPAEAARQ 201 (206)
T ss_pred cCCCEEEEcCCcCcccCCCCCHHHHHHHHHhc--CCC-cEEEECCcCHHHHHHHHHcCCCEEEEeehhcCCCCHHHHHHH
Confidence 468888764211 0112455566666543 333 45556667888899999999997765 33344444444
Q ss_pred HH
Q 044790 92 WQ 93 (162)
Q Consensus 92 i~ 93 (162)
++
T Consensus 202 l~ 203 (206)
T TIGR03128 202 IR 203 (206)
T ss_pred HH
Confidence 43
No 493
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=43.70 E-value=2.3e+02 Score=25.14 Aligned_cols=75 Identities=8% Similarity=0.136 Sum_probs=46.8
Q ss_pred CccEEEEcC-CCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 044790 22 QIDLVLTEV-LMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVWRKC 99 (162)
Q Consensus 22 ~~DlvllD~-~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~~ 99 (162)
++.|+|+|- +|-....+..+.+.-+.+ -.++.+|++|. +...+...+..-+.-|-.||++.+++...|+.++...
T Consensus 124 ~~KV~IIDEvh~Ls~~a~NaLLKtLEEP-P~~~~fIL~Tt--d~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~e 199 (618)
T PRK14951 124 RFKVFMIDEVHMLTNTAFNAMLKTLEEP-PEYLKFVLATT--DPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAE 199 (618)
T ss_pred CceEEEEEChhhCCHHHHHHHHHhcccC-CCCeEEEEEEC--CchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHc
Confidence 478898873 443333343333222222 03455665553 3444555577778889999999999999999888764
No 494
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=43.61 E-value=2e+02 Score=24.39 Aligned_cols=71 Identities=21% Similarity=0.205 Sum_probs=45.1
Q ss_pred EcCHHHHHHHHHhhCCCccEEEEcCCCCC------------CCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHc
Q 044790 6 VENGLQAWKILEDLMDQIDLVLTEVLMPC------------LSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSK 73 (162)
Q Consensus 6 a~~~~eal~~l~~~~~~~DlvllD~~mp~------------~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~ 73 (162)
+.+.++|..+++. .+|.|.+.+. |+ ..-++++..++.......+|||.=..-....++.+|+.+
T Consensus 277 v~t~e~a~~l~~a---Gad~i~vg~g-~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAla~ 352 (486)
T PRK05567 277 VATAEAARALIEA---GADAVKVGIG-PGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAA 352 (486)
T ss_pred cCCHHHHHHHHHc---CCCEEEECCC-CCccccceeecCCCcCHHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHHHh
Confidence 3456666666553 6787765331 11 122445555543221246888887888899999999999
Q ss_pred CCceEEe
Q 044790 74 GAVYFLV 80 (162)
Q Consensus 74 Ga~~~l~ 80 (162)
||+..+.
T Consensus 353 GA~~v~~ 359 (486)
T PRK05567 353 GASAVML 359 (486)
T ss_pred CCCEEEE
Confidence 9997754
No 495
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=43.58 E-value=1.1e+02 Score=21.45 Aligned_cols=38 Identities=13% Similarity=0.105 Sum_probs=28.5
Q ss_pred HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 38 IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 38 ~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
.++++.++. ..+++.+.|- .+.+....++..|++++++
T Consensus 150 ~~~i~~~~~----~g~~v~~wtv-n~~~~~~~~~~~GVdgI~T 187 (189)
T cd08556 150 PELVRAAHA----AGLKVYVWTV-NDPEDARRLLALGVDGIIT 187 (189)
T ss_pred HHHHHHHHH----cCCEEEEEcC-CCHHHHHHHHHCCCCEEec
Confidence 456777765 4678887776 4677788889999998875
No 496
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=43.49 E-value=1.3e+02 Score=21.90 Aligned_cols=44 Identities=18% Similarity=0.255 Sum_probs=30.4
Q ss_pred HHHHHHHHhhCCCccEEEEcCCCCCCC---HHHHHHHHHccCCCCCCcEEEEe
Q 044790 10 LQAWKILEDLMDQIDLVLTEVLMPCLS---GIGLLRKIMNHKTCKNIPVIMMS 59 (162)
Q Consensus 10 ~eal~~l~~~~~~~DlvllD~~mp~~~---g~~~~~~ir~~~~~~~~piI~lt 59 (162)
.++++.+.. .+.+.|+++++-|+.+ +.+++..|+. ...|||...
T Consensus 19 ~~~l~~a~~--~~~~~vvl~InSpGG~v~~~~~i~~~l~~----~~kPvia~v 65 (187)
T cd07020 19 ERAIDQAEE--GGADALIIELDTPGGLLDSTREIVQAILA----SPVPVVVYV 65 (187)
T ss_pred HHHHHHHHh--CCCCEEEEEEECCCCCHHHHHHHHHHHHh----CCCCEEEEE
Confidence 455666665 5689999999999975 4455556654 357887665
No 497
>PRK03379 vitamin B12-transporter protein BtuF; Provisional
Probab=43.48 E-value=1.1e+02 Score=23.40 Aligned_cols=74 Identities=12% Similarity=0.091 Sum_probs=40.2
Q ss_pred HHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHH-cCCceEEeCCCCHHHHHHH
Q 044790 13 WKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLS-KGAVYFLVKPIRKNELQNL 91 (162)
Q Consensus 13 l~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~-~Ga~~~l~KP~~~~~L~~~ 91 (162)
+|.+-. .+||+||.... ...-+.++.|++ ..+|++.+... ..+.....+. .| ..+-|+-..+++...
T Consensus 65 ~E~il~--l~PDlVi~~~~---~~~~~~~~~L~~----~gi~v~~~~~~-~~~~~~~~i~~lg--~~~g~~~~A~~li~~ 132 (260)
T PRK03379 65 LERIVA--LKPDLVLAWRG---GNAERQVDQLAS----LGIKVMWVDAT-SIEQIANALRQLA--PWSPQPEKAEQAAQS 132 (260)
T ss_pred HHHHHh--cCCCEEEEecC---CCcHHHHHHHHH----CCCCEEEeCCC-CHHHHHHHHHHHH--HHcCCHHHHHHHHHH
Confidence 344555 68999987432 122345667764 46888887543 3444434332 22 233455556666666
Q ss_pred HHHHHHh
Q 044790 92 WQHVWRK 98 (162)
Q Consensus 92 i~~~l~~ 98 (162)
+++.+..
T Consensus 133 ~~~~l~~ 139 (260)
T PRK03379 133 LLQQYAA 139 (260)
T ss_pred HHHHHHH
Confidence 6655543
No 498
>PRK10116 universal stress protein UspC; Provisional
Probab=43.44 E-value=95 Score=20.75 Aligned_cols=45 Identities=11% Similarity=0.235 Sum_probs=22.7
Q ss_pred HHHHHHHHhhCCCccEEEEcCCCCC-CCHH-HHHHHHHccCCCCCCcEEEEe
Q 044790 10 LQAWKILEDLMDQIDLVLTEVLMPC-LSGI-GLLRKIMNHKTCKNIPVIMMS 59 (162)
Q Consensus 10 ~eal~~l~~~~~~~DlvllD~~mp~-~~g~-~~~~~ir~~~~~~~~piI~lt 59 (162)
+..++.+++ ..+|||++...-+. ...+ .....+-.. ..+||+++-
T Consensus 92 ~~I~~~a~~--~~~DLiV~g~~~~~~~~~~~s~a~~v~~~---~~~pVLvv~ 138 (142)
T PRK10116 92 EHILEVCRK--HHFDLVICGNHNHSFFSRASCSAKRVIAS---SEVDVLLVP 138 (142)
T ss_pred HHHHHHHHH--hCCCEEEEcCCcchHHHHHHHHHHHHHhc---CCCCEEEEe
Confidence 344455555 67888888765332 1111 112222222 467887764
No 499
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=43.34 E-value=71 Score=18.97 Aligned_cols=51 Identities=10% Similarity=0.116 Sum_probs=32.9
Q ss_pred EEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecC
Q 044790 5 AVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSH 61 (162)
Q Consensus 5 ~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~ 61 (162)
.+.....|.++|.+ ..++....|+..-. +....+.+......+|+|++-..
T Consensus 10 ~C~~C~ka~~~L~~--~gi~~~~~di~~~~----~~~~el~~~~g~~~vP~v~i~~~ 60 (73)
T cd03027 10 GCEDCTAVRLFLRE--KGLPYVEINIDIFP----ERKAELEERTGSSVVPQIFFNEK 60 (73)
T ss_pred CChhHHHHHHHHHH--CCCceEEEECCCCH----HHHHHHHHHhCCCCcCEEEECCE
Confidence 35567888999998 77888888886422 22333332222257899988753
No 500
>PF12916 DUF3834: Protein of unknown function (DUF3834); InterPro: IPR024533 This family is likely to be related to solute-binding lipo-proteins.; PDB: 3MST_A.
Probab=43.21 E-value=46 Score=24.87 Aligned_cols=71 Identities=10% Similarity=0.079 Sum_probs=39.1
Q ss_pred EEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCc-EEEEecCCCHHHHHHHHHcCCceE
Q 044790 2 AVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIP-VIMMSSHDSMSIVFKCLSKGAVYF 78 (162)
Q Consensus 2 ~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~p-iI~lt~~~~~~~~~~a~~~Ga~~~ 78 (162)
+++.+++..++++++++ ...|-.++-..+.. |..|=..+.+.. ..+| .=......+.++...+++.|++-+
T Consensus 96 EvVytdD~~~i~~Ml~~--g~vdsAVv~~~~~~--G~~fEdl~~~~g--~~~PgsCga~v~~~~~~fi~aY~~GI~~~ 167 (201)
T PF12916_consen 96 EVVYTDDMSEIVKMLNE--GEVDSAVVGSEFSK--GETFEDLLGSLG--LYAPGSCGAYVNGDPDYFISAYEEGIDLI 167 (201)
T ss_dssp EEEE---HHHHHHHHHT--T-E--EEEETTT-----EEHHHHHHHTT--------EEEEESS--HHHHHHHHHHHHHH
T ss_pred eeEEecCHHHHHHHHhc--Cceeeeeecchhcc--chhHHHHHhhcC--CCCChhhhhhhcCChHHHHHHHHHHHHHH
Confidence 67788899999999999 88988888855544 544445555444 4556 333334556888899998887743
Done!