Query 044790
Match_columns 162
No_of_seqs 179 out of 1488
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 11:35:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044790.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044790hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3to5_A CHEY homolog; alpha(5)b 99.9 1.3E-25 4.3E-30 156.8 12.4 94 3-98 40-133 (134)
2 3gl9_A Response regulator; bet 99.9 1.4E-21 4.9E-26 132.6 13.7 95 1-97 27-121 (122)
3 3t6k_A Response regulator rece 99.9 3.7E-21 1.3E-25 132.8 13.5 99 1-101 29-127 (136)
4 3f6p_A Transcriptional regulat 99.8 2.2E-20 7.4E-25 126.2 12.8 93 1-98 27-119 (120)
5 3h1g_A Chemotaxis protein CHEY 99.8 9E-20 3.1E-24 124.5 13.5 96 2-98 32-127 (129)
6 3gt7_A Sensor protein; structu 99.8 1.7E-19 5.6E-24 127.0 14.8 100 1-102 32-131 (154)
7 2lpm_A Two-component response 99.8 4.7E-22 1.6E-26 136.7 0.7 88 1-97 33-121 (123)
8 1dbw_A Transcriptional regulat 99.8 2E-19 6.8E-24 122.1 13.7 95 1-99 28-122 (126)
9 2pl1_A Transcriptional regulat 99.8 3.3E-19 1.1E-23 119.7 14.7 95 1-99 25-119 (121)
10 3luf_A Two-component system re 99.8 8.6E-20 2.9E-24 139.6 13.1 101 1-103 149-250 (259)
11 3crn_A Response regulator rece 99.8 2.3E-19 7.9E-24 122.9 13.9 96 1-100 28-123 (132)
12 3b2n_A Uncharacterized protein 99.8 1.4E-19 4.9E-24 124.1 12.8 97 2-102 31-127 (133)
13 3rqi_A Response regulator prot 99.8 2.7E-20 9.1E-25 135.0 8.8 95 1-99 32-126 (184)
14 3cfy_A Putative LUXO repressor 99.8 2.1E-19 7.1E-24 124.1 12.5 96 1-100 29-124 (137)
15 3m6m_D Sensory/regulatory prot 99.8 3.4E-19 1.2E-23 124.0 13.7 96 1-98 39-136 (143)
16 2r25_B Osmosensing histidine p 99.8 5.2E-19 1.8E-23 121.5 13.8 97 2-99 29-128 (133)
17 3nhm_A Response regulator; pro 99.8 3E-19 1E-23 122.0 12.4 100 1-103 28-127 (133)
18 1srr_A SPO0F, sporulation resp 99.8 2.7E-19 9.2E-24 120.9 11.8 94 1-98 28-121 (124)
19 1i3c_A Response regulator RCP1 99.8 9.6E-19 3.3E-23 122.3 15.0 99 2-100 36-139 (149)
20 3heb_A Response regulator rece 99.8 8.8E-19 3E-23 122.6 14.8 100 2-103 32-140 (152)
21 1zgz_A Torcad operon transcrip 99.8 1E-18 3.5E-23 117.6 14.5 94 1-99 27-120 (122)
22 3kht_A Response regulator; PSI 99.8 4.8E-19 1.6E-23 122.8 13.1 100 2-103 33-133 (144)
23 1jbe_A Chemotaxis protein CHEY 99.8 8.8E-19 3E-23 118.9 14.1 96 2-99 31-126 (128)
24 3hv2_A Response regulator/HD d 99.8 3.6E-19 1.2E-23 124.9 12.5 97 1-101 39-136 (153)
25 1mb3_A Cell division response 99.8 2.5E-19 8.6E-24 120.8 11.2 96 1-98 26-121 (124)
26 3r0j_A Possible two component 99.8 4.3E-19 1.5E-23 134.3 13.8 97 1-101 48-144 (250)
27 3n0r_A Response regulator; sig 99.8 3.1E-20 1.1E-24 144.3 7.2 94 1-101 185-280 (286)
28 3kto_A Response regulator rece 99.8 1.2E-19 4.1E-24 124.9 9.4 99 1-103 31-131 (136)
29 3grc_A Sensor protein, kinase; 99.8 1.7E-19 5.9E-24 124.3 10.1 102 1-104 31-133 (140)
30 3jte_A Response regulator rece 99.8 7.8E-19 2.7E-23 121.4 13.1 101 1-103 28-128 (143)
31 3hdg_A Uncharacterized protein 99.8 2.9E-19 1E-23 122.7 10.8 99 1-103 32-130 (137)
32 1p6q_A CHEY2; chemotaxis, sign 99.8 4.7E-19 1.6E-23 120.4 11.5 95 2-98 33-127 (129)
33 2zay_A Response regulator rece 99.8 1E-18 3.5E-23 121.3 13.4 100 1-102 33-132 (147)
34 4e7p_A Response regulator; DNA 99.8 8.9E-19 3E-23 122.5 13.1 97 1-101 47-143 (150)
35 2qzj_A Two-component response 99.8 9.2E-19 3.2E-23 120.7 12.9 97 1-102 29-125 (136)
36 1tmy_A CHEY protein, TMY; chem 99.8 6.9E-19 2.4E-23 118.1 11.8 92 1-96 27-119 (120)
37 1xhf_A DYE resistance, aerobic 99.8 1.8E-18 6.3E-23 116.5 13.9 94 1-99 28-121 (123)
38 2a9o_A Response regulator; ess 99.8 1.4E-18 4.7E-23 116.3 12.9 93 1-98 26-118 (120)
39 3cnb_A DNA-binding response re 99.8 2.5E-18 8.6E-23 118.4 14.5 100 1-102 34-134 (143)
40 3eod_A Protein HNR; response r 99.8 6.4E-19 2.2E-23 120.0 11.3 96 1-100 32-128 (130)
41 3hdv_A Response regulator; PSI 99.8 1.9E-18 6.4E-23 118.5 13.3 99 1-102 32-131 (136)
42 3f6c_A Positive transcription 99.8 3.8E-19 1.3E-23 121.6 9.6 99 1-103 26-125 (134)
43 3c3m_A Response regulator rece 99.8 1.2E-18 4.1E-23 120.2 12.3 98 1-100 28-125 (138)
44 1mvo_A PHOP response regulator 99.8 1.4E-18 4.7E-23 119.1 12.2 96 1-100 28-123 (136)
45 1dz3_A Stage 0 sporulation pro 99.8 9.8E-19 3.3E-23 119.2 11.2 96 2-100 29-125 (130)
46 3i42_A Response regulator rece 99.8 5.3E-19 1.8E-23 119.9 9.7 97 1-100 28-124 (127)
47 3lua_A Response regulator rece 99.8 3.7E-19 1.3E-23 122.8 8.9 102 1-103 30-132 (140)
48 3n53_A Response regulator rece 99.8 2.8E-19 9.6E-24 123.4 8.3 99 1-101 27-125 (140)
49 1a04_A Nitrate/nitrite respons 99.8 2.9E-18 1E-22 126.6 13.9 96 2-101 32-128 (215)
50 3dzd_A Transcriptional regulat 99.8 7.1E-19 2.4E-23 141.0 11.0 97 1-101 25-121 (368)
51 2jba_A Phosphate regulon trans 99.8 2.7E-19 9.2E-24 121.1 7.1 97 1-99 27-123 (127)
52 3hzh_A Chemotaxis response reg 99.8 1.8E-18 6.1E-23 122.0 11.6 93 1-97 61-156 (157)
53 2jk1_A HUPR, hydrogenase trans 99.8 3E-18 1E-22 118.2 12.4 95 1-99 25-120 (139)
54 3eul_A Possible nitrate/nitrit 99.8 4.1E-18 1.4E-22 119.2 13.2 97 3-103 44-140 (152)
55 3cu5_A Two component transcrip 99.8 9.9E-19 3.4E-23 121.2 9.9 94 2-99 30-124 (141)
56 2ayx_A Sensor kinase protein R 99.8 1.3E-18 4.3E-23 132.6 11.2 96 1-100 154-249 (254)
57 1zh2_A KDP operon transcriptio 99.8 3.7E-18 1.2E-22 114.4 12.1 94 1-99 26-119 (121)
58 2qxy_A Response regulator; reg 99.8 3E-18 1E-22 118.3 11.8 98 1-103 29-126 (142)
59 3snk_A Response regulator CHEY 99.8 9E-20 3.1E-24 125.3 4.0 94 1-98 40-133 (135)
60 3lte_A Response regulator; str 99.8 6.7E-18 2.3E-22 115.0 13.1 98 1-101 31-128 (132)
61 1k68_A Phytochrome response re 99.8 1.1E-17 3.7E-22 114.5 14.2 101 2-102 30-135 (140)
62 3kcn_A Adenylate cyclase homol 99.8 5.8E-18 2E-22 118.4 12.9 96 1-100 28-125 (151)
63 3q9s_A DNA-binding response re 99.8 3E-18 1E-22 130.1 12.2 95 1-100 62-156 (249)
64 1w25_A Stalked-cell differenti 99.8 4E-18 1.4E-22 139.3 13.7 97 1-99 26-122 (459)
65 1yio_A Response regulatory pro 99.8 1.5E-18 5E-23 127.5 10.0 95 1-99 29-123 (208)
66 1kgs_A DRRD, DNA binding respo 99.8 5.3E-18 1.8E-22 125.8 12.7 97 1-101 27-123 (225)
67 3mm4_A Histidine kinase homolo 99.8 3.4E-18 1.2E-22 126.3 11.6 98 2-101 88-199 (206)
68 2qr3_A Two-component system re 99.8 6.7E-18 2.3E-22 116.0 11.9 98 1-102 28-130 (140)
69 3cg4_A Response regulator rece 99.8 1.2E-18 4.1E-23 120.2 8.0 101 1-103 32-132 (142)
70 3bre_A Probable two-component 99.8 7.1E-18 2.4E-22 133.4 13.2 94 1-96 44-137 (358)
71 1k66_A Phytochrome response re 99.8 1.9E-17 6.5E-22 114.5 13.9 101 2-102 34-142 (149)
72 3cg0_A Response regulator rece 99.8 1.2E-17 4E-22 114.8 12.7 98 1-103 34-133 (140)
73 3ilh_A Two component response 99.8 1.4E-17 4.9E-22 115.0 13.0 100 2-101 37-142 (146)
74 2rjn_A Response regulator rece 99.8 1.3E-17 4.5E-22 116.8 12.9 96 1-100 32-128 (154)
75 4dad_A Putative pilus assembly 99.8 3.2E-18 1.1E-22 118.8 9.6 98 1-100 46-143 (146)
76 3cz5_A Two-component response 99.8 1E-17 3.5E-22 117.2 12.2 97 1-101 31-128 (153)
77 3a10_A Response regulator; pho 99.8 3.9E-18 1.3E-22 113.8 9.4 90 1-96 26-115 (116)
78 3eq2_A Probable two-component 99.8 3.6E-18 1.2E-22 137.3 10.3 94 1-98 30-124 (394)
79 1qkk_A DCTD, C4-dicarboxylate 99.7 1.2E-17 4.1E-22 117.1 11.4 96 1-100 28-123 (155)
80 1ny5_A Transcriptional regulat 99.7 1.2E-17 4.2E-22 134.6 13.0 95 1-99 25-119 (387)
81 1dcf_A ETR1 protein; beta-alph 99.7 1.3E-17 4.4E-22 114.4 11.3 97 1-100 32-131 (136)
82 1s8n_A Putative antiterminator 99.7 7.7E-18 2.6E-22 123.6 10.3 94 1-99 38-132 (205)
83 3h5i_A Response regulator/sens 99.7 6.6E-18 2.3E-22 116.7 9.3 97 1-101 30-127 (140)
84 1ys7_A Transcriptional regulat 99.7 6.5E-18 2.2E-22 125.9 9.9 97 1-101 32-128 (233)
85 2gkg_A Response regulator homo 99.7 2E-17 6.7E-22 111.4 10.7 95 1-98 30-125 (127)
86 2qv0_A Protein MRKE; structura 99.7 7.3E-17 2.5E-21 111.4 12.4 94 3-102 38-131 (143)
87 3eqz_A Response regulator; str 99.7 7.4E-18 2.5E-22 115.0 6.1 96 1-101 28-128 (135)
88 2oqr_A Sensory transduction pr 99.7 4E-17 1.4E-21 121.5 10.3 94 1-99 29-122 (230)
89 2qvg_A Two component response 99.7 1.4E-16 4.9E-21 109.8 12.3 97 2-98 35-135 (143)
90 2rdm_A Response regulator rece 99.7 1.3E-16 4.6E-21 108.4 11.9 96 1-102 30-127 (132)
91 3c3w_A Two component transcrip 99.7 6.6E-18 2.3E-22 126.0 5.6 95 3-101 30-124 (225)
92 3t8y_A CHEB, chemotaxis respon 99.7 1.4E-16 4.6E-21 113.2 11.6 92 3-99 54-156 (164)
93 2gwr_A DNA-binding response re 99.7 4.1E-17 1.4E-21 122.5 9.2 95 1-100 30-124 (238)
94 3kyj_B CHEY6 protein, putative 99.7 5.9E-17 2E-21 112.3 8.7 84 3-91 42-128 (145)
95 2qsj_A DNA-binding response re 99.7 1.1E-16 3.8E-21 111.9 10.2 98 2-102 31-128 (154)
96 3klo_A Transcriptional regulat 99.7 9.7E-18 3.3E-22 124.9 4.6 93 5-101 38-132 (225)
97 3c97_A Signal transduction his 99.7 9.8E-17 3.3E-21 110.6 9.3 97 1-102 35-134 (140)
98 1p2f_A Response regulator; DRR 99.7 2.2E-16 7.6E-21 116.8 11.8 93 2-100 27-119 (220)
99 2j48_A Two-component sensor ki 99.7 6.8E-17 2.3E-21 107.1 8.1 91 1-96 26-116 (119)
100 3sy8_A ROCR; TIM barrel phosph 99.7 5.6E-17 1.9E-21 131.0 8.3 97 1-100 29-130 (400)
101 1dc7_A NTRC, nitrogen regulati 99.7 1.3E-18 4.3E-23 117.0 -1.6 95 1-99 28-122 (124)
102 2pln_A HP1043, response regula 99.7 1.3E-15 4.4E-20 104.5 12.2 90 1-99 43-134 (137)
103 1qo0_D AMIR; binding protein, 99.6 5.1E-16 1.7E-20 113.1 7.5 90 1-99 37-126 (196)
104 2hqr_A Putative transcriptiona 99.6 2.4E-15 8.3E-20 111.4 10.9 91 1-99 25-116 (223)
105 1a2o_A CHEB methylesterase; ba 99.6 5.4E-15 1.8E-19 117.7 11.7 92 3-99 32-134 (349)
106 2vyc_A Biodegradative arginine 99.6 8.2E-16 2.8E-20 133.2 7.2 96 1-100 33-135 (755)
107 2b4a_A BH3024; flavodoxin-like 99.6 2.5E-15 8.5E-20 103.1 5.7 91 1-98 40-131 (138)
108 3luf_A Two-component system re 99.5 8.8E-15 3E-19 111.7 6.4 75 5-85 33-107 (259)
109 3cwo_X Beta/alpha-barrel prote 99.5 1.5E-14 5.2E-19 107.5 6.3 94 2-99 7-102 (237)
110 1w25_A Stalked-cell differenti 99.3 9.8E-11 3.4E-15 95.4 13.7 95 2-99 177-271 (459)
111 3n75_A LDC, lysine decarboxyla 97.8 1.3E-05 4.3E-10 69.2 4.7 93 1-99 31-124 (715)
112 3cwo_X Beta/alpha-barrel prote 97.5 0.00035 1.2E-08 51.0 7.8 82 8-93 131-221 (237)
113 3q7r_A Transcriptional regulat 97.0 0.0029 9.8E-08 41.0 6.8 69 22-99 50-119 (121)
114 2ekc_A AQ_1548, tryptophan syn 95.1 0.13 4.5E-06 38.7 8.7 80 12-95 36-143 (262)
115 2yxb_A Coenzyme B12-dependent 95.0 0.39 1.3E-05 33.4 10.4 89 7-99 56-146 (161)
116 1qop_A Tryptophan synthase alp 94.4 0.19 6.5E-06 37.9 8.0 80 12-95 36-143 (268)
117 3o63_A Probable thiamine-phosp 94.1 0.93 3.2E-05 33.7 11.2 88 5-97 141-240 (243)
118 3vnd_A TSA, tryptophan synthas 94.1 0.18 6.1E-06 38.3 7.2 81 10-94 35-143 (267)
119 3q58_A N-acetylmannosamine-6-p 93.9 0.54 1.9E-05 34.7 9.4 71 4-81 134-210 (229)
120 1geq_A Tryptophan synthase alp 93.9 0.29 9.8E-06 36.1 7.9 73 12-90 24-124 (248)
121 1xi3_A Thiamine phosphate pyro 93.8 1 3.6E-05 32.0 10.7 85 5-96 114-210 (215)
122 1ccw_A Protein (glutamate muta 93.4 0.86 2.9E-05 30.7 9.1 89 5-96 39-134 (137)
123 3igs_A N-acetylmannosamine-6-p 93.0 0.88 3E-05 33.6 9.3 70 4-80 134-209 (232)
124 1wv2_A Thiazole moeity, thiazo 92.8 0.82 2.8E-05 34.5 8.9 86 5-97 142-237 (265)
125 2vws_A YFAU, 2-keto-3-deoxy su 92.6 2.4 8.1E-05 31.9 11.5 83 9-94 28-111 (267)
126 1xrs_B D-lysine 5,6-aminomutas 92.1 1.8 6.1E-05 32.7 10.0 87 8-99 168-259 (262)
127 2v5j_A 2,4-dihydroxyhept-2-ENE 92.0 2.9 9.8E-05 31.9 11.3 81 10-93 50-131 (287)
128 1yad_A Regulatory protein TENI 91.9 2.6 8.9E-05 30.3 12.0 87 5-98 116-214 (221)
129 1ujp_A Tryptophan synthase alp 91.8 0.41 1.4E-05 36.3 6.3 79 11-95 34-140 (271)
130 3qz6_A HPCH/HPAI aldolase; str 91.7 1.1 3.8E-05 33.6 8.6 83 10-95 27-110 (261)
131 2htm_A Thiazole biosynthesis p 91.6 1.6 5.4E-05 33.0 9.2 87 5-97 131-228 (268)
132 1dxe_A 2-dehydro-3-deoxy-galac 91.5 3.3 0.00011 30.8 11.5 83 8-93 28-111 (256)
133 3nav_A Tryptophan synthase alp 90.7 0.47 1.6E-05 36.0 5.6 78 11-92 38-143 (271)
134 2tps_A Protein (thiamin phosph 90.4 2.6 9E-05 30.2 9.4 85 6-96 123-220 (227)
135 1ka9_F Imidazole glycerol phos 90.3 2.1 7.1E-05 31.4 8.9 69 8-81 32-104 (252)
136 3inp_A D-ribulose-phosphate 3- 90.2 0.99 3.4E-05 33.7 6.9 84 8-95 41-130 (246)
137 1req_A Methylmalonyl-COA mutas 90.0 2.3 7.7E-05 36.8 9.8 87 8-98 635-723 (727)
138 3ajx_A 3-hexulose-6-phosphate 89.5 0.32 1.1E-05 34.8 3.7 87 7-97 10-100 (207)
139 3kp1_A D-ornithine aminomutase 89.5 4.3 0.00015 34.7 10.7 89 7-100 644-737 (763)
140 2xij_A Methylmalonyl-COA mutas 89.2 3.2 0.00011 36.1 10.1 90 7-100 642-733 (762)
141 4fxs_A Inosine-5'-monophosphat 89.2 1.5 5.1E-05 36.1 7.8 66 10-80 233-299 (496)
142 1tqj_A Ribulose-phosphate 3-ep 88.8 1.7 6E-05 31.8 7.4 83 8-96 18-109 (230)
143 1izc_A Macrophomate synthase i 88.6 7.3 0.00025 30.4 11.3 84 9-94 52-138 (339)
144 2w6r_A Imidazole glycerol phos 88.3 4.2 0.00014 30.0 9.3 67 9-81 158-229 (266)
145 1h5y_A HISF; histidine biosynt 88.2 5.3 0.00018 28.8 9.7 81 8-93 155-245 (253)
146 2v82_A 2-dehydro-3-deoxy-6-pho 88.1 0.95 3.2E-05 32.5 5.4 67 6-80 108-175 (212)
147 1rd5_A Tryptophan synthase alp 87.9 1.2 4.2E-05 33.1 6.1 77 12-94 37-138 (262)
148 3f4w_A Putative hexulose 6 pho 87.9 3.7 0.00013 29.2 8.5 83 8-98 115-209 (211)
149 4avf_A Inosine-5'-monophosphat 87.7 2.7 9.3E-05 34.4 8.5 68 8-80 229-297 (490)
150 1ka9_F Imidazole glycerol phos 87.5 6.7 0.00023 28.6 10.2 79 10-93 155-243 (252)
151 3qja_A IGPS, indole-3-glycerol 87.4 5.1 0.00017 30.2 9.3 73 4-81 167-242 (272)
152 2gjl_A Hypothetical protein PA 87.3 8 0.00027 29.6 10.6 70 5-80 124-200 (328)
153 3usb_A Inosine-5'-monophosphat 87.1 2.8 9.6E-05 34.6 8.3 68 8-80 256-324 (511)
154 4adt_A Pyridoxine biosynthetic 87.0 8.7 0.0003 29.4 11.9 91 3-99 129-261 (297)
155 3o07_A Pyridoxine biosynthesis 86.9 5.1 0.00018 30.6 8.9 91 3-99 119-252 (291)
156 3r2g_A Inosine 5'-monophosphat 86.6 3.1 0.00011 32.9 7.9 66 10-80 102-168 (361)
157 3kts_A Glycerol uptake operon 86.5 1.7 5.7E-05 31.3 5.8 63 10-81 117-179 (192)
158 1thf_D HISF protein; thermophI 86.1 8 0.00027 28.1 10.8 80 9-93 153-242 (253)
159 3f4w_A Putative hexulose 6 pho 85.8 1.8 6.1E-05 30.9 5.8 74 8-85 11-88 (211)
160 3tsm_A IGPS, indole-3-glycerol 85.0 7.5 0.00026 29.4 9.1 80 3-88 173-261 (272)
161 2w6r_A Imidazole glycerol phos 84.7 4.2 0.00014 30.0 7.6 69 8-81 31-103 (266)
162 1thf_D HISF protein; thermophI 84.6 8.9 0.00031 27.9 9.3 69 8-81 31-103 (253)
163 1y0e_A Putative N-acetylmannos 84.6 7.3 0.00025 27.8 8.7 71 5-81 125-204 (223)
164 2p9j_A Hypothetical protein AQ 84.5 6.5 0.00022 26.2 8.0 64 22-89 8-89 (162)
165 1h5y_A HISF; histidine biosynt 84.5 5.4 0.00018 28.8 8.0 68 8-80 34-105 (253)
166 3tqv_A Nicotinate-nucleotide p 84.1 5 0.00017 30.6 7.8 69 23-95 169-239 (287)
167 1h1y_A D-ribulose-5-phosphate 84.1 7.3 0.00025 28.2 8.5 83 10-97 126-222 (228)
168 1xm3_A Thiazole biosynthesis p 83.9 6.3 0.00021 29.4 8.3 71 5-81 133-207 (264)
169 2y88_A Phosphoribosyl isomeras 83.8 6.1 0.00021 28.6 8.1 79 8-91 150-241 (244)
170 1g5t_A COB(I)alamin adenosyltr 83.6 3 0.0001 30.0 6.1 47 21-70 119-170 (196)
171 1qv9_A F420-dependent methylen 83.4 2.6 9E-05 31.4 5.7 61 17-83 61-121 (283)
172 3ceu_A Thiamine phosphate pyro 83.3 3.3 0.00011 29.7 6.3 69 5-79 94-170 (210)
173 1y80_A Predicted cobalamin bin 82.8 3.7 0.00013 29.4 6.4 69 8-81 127-197 (210)
174 3l0g_A Nicotinate-nucleotide p 82.7 5.5 0.00019 30.6 7.5 53 39-95 196-248 (300)
175 4fo4_A Inosine 5'-monophosphat 82.7 6.3 0.00022 31.1 8.1 66 10-80 110-176 (366)
176 2f6u_A GGGPS, (S)-3-O-geranylg 82.5 5.6 0.00019 29.4 7.3 61 10-83 23-86 (234)
177 3bo9_A Putative nitroalkan dio 82.5 11 0.00036 29.0 9.3 70 5-80 130-204 (326)
178 2yw3_A 4-hydroxy-2-oxoglutarat 82.5 11 0.00039 26.9 10.2 86 5-100 110-202 (207)
179 2i2x_B MTAC, methyltransferase 82.4 8.4 0.00029 28.6 8.4 81 7-97 161-243 (258)
180 3tdn_A FLR symmetric alpha-bet 82.2 8.3 0.00028 28.1 8.3 69 8-81 36-108 (247)
181 2p10_A MLL9387 protein; putati 81.9 8.7 0.0003 29.3 8.3 76 2-82 166-260 (286)
182 3bw2_A 2-nitropropane dioxygen 81.7 17 0.00057 28.3 10.8 69 5-79 151-235 (369)
183 1vzw_A Phosphoribosyl isomeras 81.5 6 0.00021 28.7 7.3 80 8-92 147-239 (244)
184 3ovp_A Ribulose-phosphate 3-ep 80.8 3.8 0.00013 30.0 5.9 83 8-95 18-108 (228)
185 3iwp_A Copper homeostasis prot 80.5 6.3 0.00021 30.1 7.1 85 4-94 44-150 (287)
186 4af0_A Inosine-5'-monophosphat 80.3 6.9 0.00023 32.7 7.7 64 11-79 284-348 (556)
187 3ffs_A Inosine-5-monophosphate 80.2 20 0.00068 28.6 10.3 73 5-80 191-274 (400)
188 2gjl_A Hypothetical protein PA 80.2 14 0.00047 28.3 9.2 62 8-81 84-145 (328)
189 3l0g_A Nicotinate-nucleotide p 80.1 7.7 0.00026 29.8 7.5 67 3-79 211-277 (300)
190 1viz_A PCRB protein homolog; s 80.1 5.3 0.00018 29.6 6.5 63 10-85 23-88 (240)
191 1jcn_A Inosine monophosphate d 79.6 12 0.00041 30.6 9.1 67 9-80 256-323 (514)
192 1r8j_A KAIA; circadian clock p 79.6 15 0.00052 27.7 8.7 97 1-101 34-132 (289)
193 1yxy_A Putative N-acetylmannos 79.4 10 0.00035 27.3 7.8 69 5-80 139-214 (234)
194 3paj_A Nicotinate-nucleotide p 79.1 20 0.00068 27.8 9.6 67 3-79 235-301 (320)
195 2z6i_A Trans-2-enoyl-ACP reduc 78.9 20 0.00067 27.5 10.1 69 5-79 116-189 (332)
196 3ffs_A Inosine-5-monophosphate 78.7 8.2 0.00028 30.8 7.6 65 10-80 146-211 (400)
197 3tha_A Tryptophan synthase alp 78.7 3.9 0.00013 30.6 5.3 81 13-98 34-139 (252)
198 3paj_A Nicotinate-nucleotide p 78.4 6.9 0.00024 30.3 6.8 53 38-94 219-271 (320)
199 1qo2_A Molecule: N-((5-phospho 77.7 8.9 0.0003 27.8 7.1 78 8-91 145-239 (241)
200 1vrd_A Inosine-5'-monophosphat 77.6 13 0.00046 30.1 8.8 68 8-80 237-305 (494)
201 1p0k_A Isopentenyl-diphosphate 77.0 23 0.00079 27.3 9.7 45 34-80 235-279 (349)
202 3tqv_A Nicotinate-nucleotide p 76.2 12 0.00041 28.5 7.5 66 4-79 203-268 (287)
203 1h1y_A D-ribulose-5-phosphate 75.8 11 0.00038 27.2 7.1 82 8-95 20-109 (228)
204 3gnn_A Nicotinate-nucleotide p 75.7 8.5 0.00029 29.5 6.6 54 38-95 197-250 (298)
205 3vk5_A MOEO5; TIM barrel, tran 75.5 12 0.0004 28.6 7.2 60 21-82 198-257 (286)
206 1qpo_A Quinolinate acid phosph 75.4 10 0.00035 28.8 7.0 70 4-80 199-268 (284)
207 3ovp_A Ribulose-phosphate 3-ep 75.1 21 0.00073 25.9 8.5 74 22-98 134-219 (228)
208 1ep3_A Dihydroorotate dehydrog 74.7 24 0.00083 26.4 9.7 86 8-98 177-293 (311)
209 2gek_A Phosphatidylinositol ma 74.4 26 0.00088 26.6 9.8 76 10-98 274-349 (406)
210 1wa3_A 2-keto-3-deoxy-6-phosph 73.6 20 0.0007 25.0 8.7 80 7-93 19-101 (205)
211 3gnn_A Nicotinate-nucleotide p 73.5 24 0.00083 27.0 8.7 65 4-78 214-278 (298)
212 4fo4_A Inosine 5'-monophosphat 73.3 27 0.00092 27.4 9.2 73 5-80 156-239 (366)
213 1wa3_A 2-keto-3-deoxy-6-phosph 73.1 6.8 0.00023 27.6 5.3 65 8-80 113-177 (205)
214 3jr2_A Hexulose-6-phosphate sy 73.1 4.2 0.00014 29.3 4.2 83 7-93 16-103 (218)
215 1eep_A Inosine 5'-monophosphat 73.1 31 0.0011 27.2 9.6 73 5-80 201-284 (404)
216 3qja_A IGPS, indole-3-glycerol 73.0 27 0.00093 26.2 10.0 77 14-95 79-158 (272)
217 3usb_A Inosine-5'-monophosphat 72.8 34 0.0012 28.0 10.1 74 5-81 304-388 (511)
218 3lkz_A Non-structural protein 72.7 7.1 0.00024 30.2 5.5 63 21-99 159-223 (321)
219 3w01_A Heptaprenylglyceryl pho 72.7 11 0.00038 27.8 6.4 60 10-81 26-87 (235)
220 4e38_A Keto-hydroxyglutarate-a 72.6 16 0.00054 26.9 7.3 84 5-94 41-125 (232)
221 3bo9_A Putative nitroalkan dio 71.8 31 0.0011 26.4 9.2 62 8-81 90-151 (326)
222 3khj_A Inosine-5-monophosphate 71.7 20 0.0007 28.0 8.1 65 10-80 107-172 (361)
223 1jub_A Dihydroorotate dehydrog 70.7 19 0.00065 27.1 7.6 68 8-80 107-191 (311)
224 1kbi_A Cytochrome B2, L-LCR; f 70.2 15 0.0005 30.3 7.2 39 38-80 332-370 (511)
225 1eep_A Inosine 5'-monophosphat 70.1 26 0.0009 27.6 8.6 66 10-80 155-221 (404)
226 3ctl_A D-allulose-6-phosphate 70.1 23 0.0008 25.8 7.7 82 8-94 14-101 (231)
227 3khj_A Inosine-5-monophosphate 69.8 22 0.00076 27.8 8.0 73 5-80 152-235 (361)
228 1o4u_A Type II quinolic acid p 69.8 19 0.00066 27.3 7.4 55 38-96 180-235 (285)
229 3b0p_A TRNA-dihydrouridine syn 69.8 25 0.00084 27.3 8.2 65 10-79 147-223 (350)
230 3ezx_A MMCP 1, monomethylamine 69.7 6.3 0.00021 28.5 4.5 70 8-82 131-204 (215)
231 1k1e_A Deoxy-D-mannose-octulos 69.2 24 0.00082 24.0 9.8 52 38-93 41-92 (180)
232 2agk_A 1-(5-phosphoribosyl)-5- 68.7 19 0.00066 26.7 7.1 78 11-93 162-257 (260)
233 3s83_A Ggdef family protein; s 68.1 4.9 0.00017 29.4 3.7 86 6-94 160-254 (259)
234 4ef8_A Dihydroorotate dehydrog 68.0 12 0.00042 29.3 6.1 61 38-100 265-332 (354)
235 2px2_A Genome polyprotein [con 67.1 12 0.00039 28.3 5.5 62 21-98 138-201 (269)
236 1geq_A Tryptophan synthase alp 67.1 14 0.00047 26.8 6.0 67 8-81 144-220 (248)
237 4avf_A Inosine-5'-monophosphat 66.9 49 0.0017 26.9 9.7 72 6-80 278-360 (490)
238 3mn1_A Probable YRBI family ph 66.4 29 0.00098 23.9 7.7 51 40-94 54-104 (189)
239 1x1o_A Nicotinate-nucleotide p 66.4 19 0.00066 27.3 6.8 53 39-95 184-237 (286)
240 2c6q_A GMP reductase 2; TIM ba 66.1 22 0.00076 27.6 7.3 56 22-80 132-188 (351)
241 2b7n_A Probable nicotinate-nuc 66.0 22 0.00076 26.6 7.0 65 4-79 187-255 (273)
242 1jcn_A Inosine monophosphate d 65.7 42 0.0015 27.3 9.2 73 5-83 303-390 (514)
243 1qpo_A Quinolinate acid phosph 65.6 23 0.00078 26.9 7.0 56 38-97 182-237 (284)
244 3fkq_A NTRC-like two-domain pr 65.4 32 0.0011 26.6 8.1 79 1-97 49-127 (373)
245 3zwt_A Dihydroorotate dehydrog 65.3 39 0.0013 26.4 8.6 60 38-98 285-351 (367)
246 2qjg_A Putative aldolase MJ040 65.1 38 0.0013 24.8 9.9 80 10-98 169-259 (273)
247 3oix_A Putative dihydroorotate 64.3 14 0.00048 28.8 5.8 61 38-99 262-329 (345)
248 2nv1_A Pyridoxal biosynthesis 63.2 12 0.00041 28.4 5.1 89 4-98 130-260 (305)
249 2c6q_A GMP reductase 2; TIM ba 63.2 51 0.0017 25.6 9.3 75 5-83 168-255 (351)
250 1jvn_A Glutamine, bifunctional 63.0 64 0.0022 26.7 10.9 78 10-93 455-544 (555)
251 2fli_A Ribulose-phosphate 3-ep 63.0 12 0.00042 26.5 4.9 72 22-94 131-216 (220)
252 3sr7_A Isopentenyl-diphosphate 62.4 25 0.00085 27.6 6.9 69 8-81 156-237 (365)
253 1p0k_A Isopentenyl-diphosphate 62.2 51 0.0017 25.3 8.9 68 8-80 128-208 (349)
254 3ff4_A Uncharacterized protein 61.8 0.88 3E-05 30.2 -1.4 83 9-94 20-103 (122)
255 1o4u_A Type II quinolic acid p 61.5 11 0.00037 28.7 4.5 69 4-79 198-266 (285)
256 2yzr_A Pyridoxal biosynthesis 61.5 26 0.0009 27.2 6.7 59 37-98 228-293 (330)
257 1f76_A Dihydroorotate dehydrog 61.5 43 0.0015 25.5 8.1 66 11-79 229-316 (336)
258 2ayx_A Sensor kinase protein R 61.4 12 0.00041 27.2 4.7 59 21-97 47-105 (254)
259 1rpx_A Protein (ribulose-phosp 61.3 41 0.0014 23.9 8.2 71 8-83 24-100 (230)
260 2e6f_A Dihydroorotate dehydrog 61.2 15 0.00053 27.7 5.4 61 38-100 232-299 (314)
261 2nli_A Lactate oxidase; flavoe 60.9 57 0.002 25.4 9.8 74 6-83 237-316 (368)
262 3cu2_A Ribulose-5-phosphate 3- 60.7 9.6 0.00033 28.1 4.0 82 8-95 27-113 (237)
263 3sz8_A 2-dehydro-3-deoxyphosph 60.4 53 0.0018 24.9 8.5 68 9-82 150-243 (285)
264 2z6i_A Trans-2-enoyl-ACP reduc 60.4 37 0.0013 25.9 7.5 62 8-81 76-137 (332)
265 2x0d_A WSAF; GT4 family, trans 60.2 35 0.0012 26.8 7.5 77 8-99 304-380 (413)
266 1rd5_A Tryptophan synthase alp 60.1 20 0.0007 26.3 5.8 42 37-81 189-230 (262)
267 3okp_A GDP-mannose-dependent a 60.1 24 0.00083 26.5 6.5 75 9-97 263-343 (394)
268 3p3b_A Mandelate racemase/muco 60.0 29 0.00098 27.3 7.0 78 8-90 213-293 (392)
269 3d8b_A Fidgetin-like protein 1 60.0 41 0.0014 25.8 7.8 85 13-99 169-267 (357)
270 4e38_A Keto-hydroxyglutarate-a 60.0 44 0.0015 24.5 7.5 83 6-97 134-228 (232)
271 3iwp_A Copper homeostasis prot 59.9 29 0.00098 26.4 6.6 71 6-80 165-237 (287)
272 2r8e_A 3-deoxy-D-manno-octulos 59.6 39 0.0013 23.1 7.4 50 40-93 61-110 (188)
273 3vfd_A Spastin; ATPase, microt 59.5 28 0.00095 27.0 6.8 86 11-98 198-297 (389)
274 3fro_A GLGA glycogen synthase; 59.3 56 0.0019 24.8 8.6 74 9-97 321-394 (439)
275 1vcf_A Isopentenyl-diphosphate 59.3 54 0.0019 25.0 8.3 48 35-84 241-289 (332)
276 2rdx_A Mandelate racemase/muco 59.2 41 0.0014 26.1 7.7 74 8-89 201-275 (379)
277 3md9_A Hemin-binding periplasm 58.5 47 0.0016 23.8 7.6 78 13-100 52-129 (255)
278 3vzx_A Heptaprenylglyceryl pho 58.4 23 0.00078 26.0 5.7 59 11-81 22-82 (228)
279 4a29_A Engineered retro-aldol 58.1 56 0.0019 24.4 10.8 73 3-81 157-233 (258)
280 3sr7_A Isopentenyl-diphosphate 57.9 66 0.0023 25.2 8.7 69 7-80 218-306 (365)
281 3q58_A N-acetylmannosamine-6-p 57.9 51 0.0017 23.9 8.2 63 9-80 91-155 (229)
282 1ye8_A Protein THEP1, hypothet 57.7 43 0.0015 23.0 6.9 74 21-95 98-175 (178)
283 2khz_A C-MYC-responsive protei 57.7 42 0.0015 22.9 8.8 78 13-100 72-153 (165)
284 2jbm_A Nicotinate-nucleotide p 57.6 25 0.00084 26.8 6.0 66 4-80 202-271 (299)
285 3tjx_A Dihydroorotate dehydrog 57.3 41 0.0014 25.9 7.4 61 39-101 266-333 (354)
286 1ypf_A GMP reductase; GUAC, pu 57.2 57 0.002 25.0 8.1 55 23-80 121-176 (336)
287 1nvm_A HOA, 4-hydroxy-2-oxoval 56.9 32 0.0011 26.6 6.6 44 35-80 67-112 (345)
288 1tv5_A Dhodehase, dihydroorota 56.2 69 0.0024 25.8 8.6 61 38-99 360-427 (443)
289 3sgz_A Hydroxyacid oxidase 2; 56.0 60 0.002 25.4 8.0 39 38-80 206-244 (352)
290 1gox_A (S)-2-hydroxy-acid oxid 55.9 70 0.0024 24.9 9.7 74 6-83 233-312 (370)
291 2gl5_A Putative dehydratase pr 55.7 72 0.0025 25.0 8.9 80 8-92 230-310 (410)
292 1vrd_A Inosine-5'-monophosphat 55.4 80 0.0028 25.4 10.0 72 5-79 285-367 (494)
293 1zfj_A Inosine monophosphate d 55.4 55 0.0019 26.3 8.1 65 11-80 236-301 (491)
294 1jub_A Dihydroorotate dehydrog 55.4 57 0.002 24.4 7.8 61 38-99 229-296 (311)
295 1x1o_A Nicotinate-nucleotide p 55.2 65 0.0022 24.3 9.4 66 4-80 201-267 (286)
296 2nzl_A Hydroxyacid oxidase 1; 55.2 76 0.0026 25.0 9.0 74 6-83 260-339 (392)
297 2bdq_A Copper homeostasis prot 55.2 51 0.0018 24.1 7.1 71 7-81 133-207 (224)
298 2qr6_A IMP dehydrogenase/GMP r 54.9 56 0.0019 25.5 7.9 64 10-80 168-238 (393)
299 1qo2_A Molecule: N-((5-phospho 54.6 17 0.00057 26.3 4.5 69 7-81 30-102 (241)
300 3ib6_A Uncharacterized protein 54.6 47 0.0016 22.5 6.7 37 37-77 39-78 (189)
301 3l12_A Putative glycerophospho 54.4 41 0.0014 25.4 6.8 48 39-93 259-306 (313)
302 3c48_A Predicted glycosyltrans 54.2 71 0.0024 24.4 9.3 75 10-98 317-391 (438)
303 3e8m_A Acylneuraminate cytidyl 54.0 44 0.0015 21.9 8.0 53 40-96 39-91 (164)
304 2zbt_A Pyridoxal biosynthesis 53.7 28 0.00096 26.0 5.7 59 37-98 195-260 (297)
305 1me8_A Inosine-5'-monophosphat 53.1 38 0.0013 27.6 6.8 69 7-80 241-311 (503)
306 2e6f_A Dihydroorotate dehydrog 53.1 22 0.00076 26.8 5.1 65 10-79 109-193 (314)
307 1qap_A Quinolinic acid phospho 52.9 73 0.0025 24.2 9.7 67 3-79 212-278 (296)
308 3sgz_A Hydroxyacid oxidase 2; 52.7 80 0.0027 24.6 9.9 72 5-80 224-300 (352)
309 1ydn_A Hydroxymethylglutaryl-C 52.6 70 0.0024 23.9 9.7 75 21-100 38-130 (295)
310 1rpx_A Protein (ribulose-phosp 52.5 16 0.00055 26.2 4.0 58 22-80 140-206 (230)
311 1qop_A Tryptophan synthase alp 52.4 60 0.0021 23.9 7.3 41 38-81 194-234 (268)
312 2bfw_A GLGA glycogen synthase; 52.4 50 0.0017 22.2 9.4 74 9-97 106-179 (200)
313 1qap_A Quinolinic acid phospho 52.0 50 0.0017 25.1 6.9 52 39-94 197-248 (296)
314 1twd_A Copper homeostasis prot 51.9 72 0.0024 23.8 7.5 69 6-79 127-196 (256)
315 2iw1_A Lipopolysaccharide core 51.6 71 0.0024 23.7 8.8 66 23-98 271-337 (374)
316 3igs_A N-acetylmannosamine-6-p 51.6 66 0.0022 23.3 8.0 61 9-79 91-154 (232)
317 2f6u_A GGGPS, (S)-3-O-geranylg 51.5 45 0.0015 24.4 6.4 55 24-82 165-219 (234)
318 1jr3_D DNA polymerase III, del 51.5 75 0.0026 23.9 8.9 90 8-99 60-158 (343)
319 1sxj_E Activator 1 40 kDa subu 51.4 34 0.0012 25.7 6.0 73 22-99 134-209 (354)
320 3noy_A 4-hydroxy-3-methylbut-2 51.0 30 0.001 27.3 5.5 59 21-85 58-116 (366)
321 1q6o_A Humps, 3-keto-L-gulonat 50.9 16 0.00055 26.0 3.8 84 7-94 13-101 (216)
322 3r2g_A Inosine 5'-monophosphat 50.5 88 0.003 24.5 9.9 67 6-80 149-227 (361)
323 2b7n_A Probable nicotinate-nuc 50.5 57 0.0019 24.4 6.9 54 38-95 169-223 (273)
324 4fyk_A Deoxyribonucleoside 5'- 50.1 58 0.002 22.2 7.3 71 23-99 69-143 (152)
325 4h83_A Mandelate racemase/muco 50.0 43 0.0015 26.2 6.4 72 8-83 221-293 (388)
326 2y88_A Phosphoribosyl isomeras 50.0 67 0.0023 22.9 9.8 69 7-81 31-103 (244)
327 1req_B Methylmalonyl-COA mutas 50.0 26 0.00088 29.8 5.3 79 10-95 550-632 (637)
328 4h08_A Putative hydrolase; GDS 49.9 36 0.0012 23.2 5.5 40 21-62 73-121 (200)
329 3gr7_A NADPH dehydrogenase; fl 49.8 86 0.0029 24.1 8.7 66 8-78 230-304 (340)
330 3evf_A RNA-directed RNA polyme 49.8 38 0.0013 25.6 5.8 62 21-98 139-205 (277)
331 1gte_A Dihydropyrimidine dehyd 49.6 81 0.0028 28.1 8.8 60 38-99 775-841 (1025)
332 4gmf_A Yersiniabactin biosynth 49.5 34 0.0012 26.8 5.7 34 64-97 84-117 (372)
333 2r7a_A Bacterial heme binding 48.8 43 0.0015 24.0 5.9 76 13-98 52-128 (256)
334 1tzz_A Hypothetical protein L1 48.6 68 0.0023 25.0 7.4 74 8-86 222-300 (392)
335 3nl6_A Thiamine biosynthetic b 48.6 1.1E+02 0.0039 25.2 10.4 91 5-99 114-232 (540)
336 2gdq_A YITF; mandelate racemas 48.5 93 0.0032 24.1 8.4 78 8-90 196-275 (382)
337 2fli_A Ribulose-phosphate 3-ep 48.3 67 0.0023 22.4 7.7 69 8-81 17-91 (220)
338 2f9f_A First mannosyl transfer 48.1 58 0.002 21.7 10.8 77 8-99 87-163 (177)
339 2r79_A Periplasmic binding pro 48.1 35 0.0012 25.0 5.4 74 13-97 52-126 (283)
340 1vzw_A Phosphoribosyl isomeras 47.7 74 0.0025 22.7 8.7 69 7-81 32-104 (244)
341 1gvf_A Tagatose-bisphosphate a 47.7 88 0.003 23.6 9.1 85 6-96 154-247 (286)
342 2poz_A Putative dehydratase; o 47.6 65 0.0022 25.1 7.1 76 8-88 211-287 (392)
343 3ajx_A 3-hexulose-6-phosphate 47.6 32 0.0011 24.0 4.9 78 8-92 115-202 (207)
344 3exr_A RMPD (hexulose-6-phosph 47.4 15 0.00052 26.5 3.2 85 7-95 15-104 (221)
345 1n2z_A Vitamin B12 transport p 47.4 31 0.0011 24.6 5.0 74 13-98 50-124 (245)
346 1mzh_A Deoxyribose-phosphate a 47.3 59 0.002 23.3 6.4 63 11-76 136-199 (225)
347 3no3_A Glycerophosphodiester p 47.1 68 0.0023 23.1 6.8 40 51-93 195-234 (238)
348 3qvq_A Phosphodiesterase OLEI0 46.8 80 0.0027 22.9 7.5 49 39-94 201-249 (252)
349 3inp_A D-ribulose-phosphate 3- 46.4 68 0.0023 23.6 6.7 74 22-96 156-243 (246)
350 1vcf_A Isopentenyl-diphosphate 46.0 58 0.002 24.8 6.5 66 9-80 134-211 (332)
351 3q94_A Fructose-bisphosphate a 45.9 95 0.0033 23.5 8.4 86 6-97 158-252 (288)
352 3jva_A Dipeptide epimerase; en 45.5 1E+02 0.0034 23.7 7.9 73 8-85 195-268 (354)
353 3kru_A NADH:flavin oxidoreduct 45.5 72 0.0025 24.6 7.0 67 9-79 229-304 (343)
354 1vc4_A Indole-3-glycerol phosp 45.3 53 0.0018 24.2 6.0 73 4-80 159-235 (254)
355 3mmz_A Putative HAD family hyd 45.3 67 0.0023 21.6 7.8 51 40-95 47-97 (176)
356 1njg_A DNA polymerase III subu 45.1 52 0.0018 22.5 5.8 73 22-98 126-200 (250)
357 2lnd_A De novo designed protei 44.9 51 0.0018 20.1 7.7 51 51-101 50-104 (112)
358 3i65_A Dihydroorotate dehydrog 44.5 47 0.0016 26.6 5.8 61 38-99 332-399 (415)
359 2r60_A Glycosyl transferase, g 44.4 1E+02 0.0035 24.2 8.0 79 9-97 345-423 (499)
360 2ox4_A Putative mandelate race 44.1 71 0.0024 24.9 6.9 78 8-90 221-299 (403)
361 1ypf_A GMP reductase; GUAC, pu 44.1 1E+02 0.0036 23.4 10.3 71 6-83 157-242 (336)
362 3eld_A Methyltransferase; flav 44.0 35 0.0012 26.1 4.8 62 21-98 146-212 (300)
363 1jmv_A USPA, universal stress 43.9 59 0.002 20.5 6.1 46 9-60 91-138 (141)
364 3beo_A UDP-N-acetylglucosamine 43.3 99 0.0034 23.0 10.2 60 23-98 283-342 (375)
365 4hn9_A Iron complex transport 42.9 40 0.0014 25.5 5.2 72 13-98 109-181 (335)
366 3ij5_A 3-deoxy-D-manno-octulos 42.7 86 0.0029 22.1 7.6 50 40-93 84-133 (211)
367 3l5l_A Xenobiotic reductase A; 42.5 69 0.0024 24.8 6.5 63 12-79 251-322 (363)
368 2qq6_A Mandelate racemase/muco 42.0 75 0.0026 24.9 6.7 80 8-92 222-302 (410)
369 3vkj_A Isopentenyl-diphosphate 41.8 1.2E+02 0.0042 23.6 8.6 40 39-80 256-295 (368)
370 3l8h_A Putative haloacid dehal 41.7 74 0.0025 21.0 7.3 23 37-63 32-54 (179)
371 1c4k_A Protein (ornithine deca 41.5 37 0.0013 29.2 5.1 67 21-96 31-103 (730)
372 3rcy_A Mandelate racemase/muco 41.3 68 0.0023 25.6 6.4 73 8-85 215-288 (433)
373 3dip_A Enolase; structural gen 41.2 62 0.0021 25.6 6.1 73 8-85 225-299 (410)
374 1tqx_A D-ribulose-5-phosphate 41.1 99 0.0034 22.3 7.2 73 22-97 138-222 (227)
375 4fxs_A Inosine-5'-monophosphat 41.0 1.4E+02 0.0049 24.2 9.9 73 6-81 280-363 (496)
376 3lab_A Putative KDPG (2-keto-3 40.9 1E+02 0.0034 22.3 7.7 66 5-79 118-185 (217)
377 3fwz_A Inner membrane protein 40.8 60 0.002 20.9 5.2 54 22-80 71-124 (140)
378 2h6r_A Triosephosphate isomera 40.6 40 0.0014 24.2 4.5 52 39-92 159-215 (219)
379 3gcz_A Polyprotein; flavivirus 40.4 46 0.0016 25.2 4.9 62 21-98 155-222 (282)
380 2og9_A Mandelate racemase/muco 40.3 58 0.002 25.4 5.8 72 8-84 219-291 (393)
381 3hgj_A Chromate reductase; TIM 40.2 94 0.0032 23.9 6.9 62 12-78 244-315 (349)
382 2o56_A Putative mandelate race 40.1 77 0.0026 24.8 6.5 81 8-93 227-308 (407)
383 2pgw_A Muconate cycloisomerase 40.0 68 0.0023 24.9 6.2 73 8-85 202-275 (384)
384 2jjm_A Glycosyl transferase, g 39.9 1.1E+02 0.0036 23.1 7.2 66 23-98 285-350 (394)
385 3pvs_A Replication-associated 39.8 78 0.0027 25.3 6.6 74 21-98 105-180 (447)
386 2chg_A Replication factor C sm 39.8 63 0.0021 21.8 5.4 74 22-99 102-177 (226)
387 3mkc_A Racemase; metabolic pro 39.7 54 0.0018 25.7 5.5 79 8-91 218-297 (394)
388 3stp_A Galactonate dehydratase 39.6 82 0.0028 24.9 6.6 73 8-85 242-315 (412)
389 3kbb_A Phosphorylated carbohyd 39.5 66 0.0023 21.8 5.5 39 37-79 89-127 (216)
390 3n07_A 3-deoxy-D-manno-octulos 39.2 94 0.0032 21.5 7.7 49 41-93 61-109 (195)
391 2qgy_A Enolase from the enviro 39.0 60 0.0021 25.3 5.7 73 8-85 206-279 (391)
392 3s3t_A Nucleotide-binding prot 39.0 69 0.0024 20.3 5.3 44 9-58 96-145 (146)
393 1i4n_A Indole-3-glycerol phosp 39.0 1.1E+02 0.0039 22.5 7.8 72 3-81 154-230 (251)
394 1xvi_A MPGP, YEDP, putative ma 39.0 1E+02 0.0035 22.3 6.8 50 22-75 8-65 (275)
395 2o6l_A UDP-glucuronosyltransfe 38.9 81 0.0028 20.7 9.3 67 22-98 86-154 (170)
396 1rzu_A Glycogen synthase 1; gl 38.1 1.4E+02 0.0048 23.2 8.9 64 23-96 366-438 (485)
397 2qz4_A Paraplegin; AAA+, SPG7, 38.1 1E+02 0.0036 21.7 7.8 22 78-99 172-193 (262)
398 1vs1_A 3-deoxy-7-phosphoheptul 37.9 1.3E+02 0.0043 22.6 8.0 84 9-96 161-271 (276)
399 3lkb_A Probable branched-chain 37.9 1.1E+02 0.0036 23.2 6.9 55 8-68 186-240 (392)
400 2qzs_A Glycogen synthase; glyc 37.8 1.4E+02 0.0049 23.2 8.9 64 23-96 367-439 (485)
401 2jbm_A Nicotinate-nucleotide p 37.8 91 0.0031 23.6 6.3 54 39-95 185-238 (299)
402 3pgv_A Haloacid dehalogenase-l 37.7 68 0.0023 23.3 5.6 54 21-78 19-80 (285)
403 4dwd_A Mandelate racemase/muco 37.7 78 0.0027 24.8 6.2 78 8-90 203-280 (393)
404 3ugv_A Enolase; enzyme functio 37.7 1.1E+02 0.0039 23.8 7.1 77 8-89 231-308 (390)
405 1pii_A N-(5'phosphoribosyl)ant 37.4 1.6E+02 0.0056 23.7 8.4 81 3-90 161-250 (452)
406 1sxj_A Activator 1 95 kDa subu 37.3 97 0.0033 25.1 6.9 75 21-99 147-225 (516)
407 1vd6_A Glycerophosphoryl diest 37.3 76 0.0026 22.5 5.6 39 38-81 176-214 (224)
408 3fdx_A Putative filament prote 37.2 77 0.0026 19.9 5.8 44 10-58 96-142 (143)
409 2iuy_A Avigt4, glycosyltransfe 37.2 68 0.0023 23.7 5.6 74 10-97 223-307 (342)
410 2ovl_A Putative racemase; stru 37.0 88 0.003 24.1 6.3 76 8-88 203-279 (371)
411 3ddm_A Putative mandelate race 37.0 66 0.0023 25.2 5.6 79 8-90 211-290 (392)
412 3mwd_B ATP-citrate synthase; A 37.0 70 0.0024 24.7 5.6 85 8-99 210-318 (334)
413 2pz0_A Glycerophosphoryl diest 36.8 98 0.0034 22.3 6.3 47 38-91 201-247 (252)
414 1vr6_A Phospho-2-dehydro-3-deo 36.7 71 0.0024 24.9 5.7 80 9-95 229-338 (350)
415 2wqp_A Polysialic acid capsule 36.7 77 0.0026 24.7 5.8 67 9-81 163-235 (349)
416 3llm_A ATP-dependent RNA helic 36.6 88 0.003 22.1 5.9 64 3-69 158-225 (235)
417 3vzx_A Heptaprenylglyceryl pho 36.4 1.2E+02 0.0042 22.0 7.0 56 22-82 153-209 (228)
418 3psh_A Protein HI_1472; substr 36.1 1.2E+02 0.0042 22.5 6.9 39 14-62 78-116 (326)
419 3ju3_A Probable 2-oxoacid ferr 36.1 84 0.0029 20.0 7.1 83 8-97 27-117 (118)
420 4e4u_A Mandalate racemase/muco 36.0 76 0.0026 25.1 5.9 73 8-85 213-286 (412)
421 1q6o_A Humps, 3-keto-L-gulonat 36.0 31 0.0011 24.5 3.3 73 23-97 131-212 (216)
422 1mdl_A Mandelate racemase; iso 36.0 67 0.0023 24.6 5.5 78 9-91 202-280 (359)
423 3skv_A SSFX3; jelly roll, GDSL 35.9 25 0.00086 27.7 3.0 46 13-62 237-293 (385)
424 1viz_A PCRB protein homolog; s 35.9 1.3E+02 0.0043 22.0 7.6 56 23-82 156-211 (240)
425 1uf3_A Hypothetical protein TT 35.9 84 0.0029 21.5 5.7 48 12-65 24-76 (228)
426 3te6_A Regulatory protein SIR3 35.8 54 0.0019 25.1 4.8 27 73-99 188-214 (318)
427 2nql_A AGR_PAT_674P, isomerase 35.7 81 0.0028 24.5 6.0 76 8-89 220-296 (388)
428 1z41_A YQJM, probable NADH-dep 35.7 1.2E+02 0.0041 23.1 6.9 63 11-78 233-304 (338)
429 1ujp_A Tryptophan synthase alp 35.7 1.3E+02 0.0046 22.2 7.7 39 38-81 191-229 (271)
430 3fvv_A Uncharacterized protein 35.5 74 0.0025 21.8 5.3 38 38-79 98-135 (232)
431 3td9_A Branched chain amino ac 35.4 68 0.0023 23.9 5.4 55 8-68 192-246 (366)
432 3go2_A Putative L-alanine-DL-g 35.2 77 0.0026 25.0 5.8 70 8-84 225-295 (409)
433 3mqt_A Mandelate racemase/muco 35.0 55 0.0019 25.7 4.9 73 8-85 213-286 (394)
434 3tdn_A FLR symmetric alpha-bet 34.4 8.4 0.00029 28.1 0.0 40 38-80 189-228 (247)
435 2nli_A Lactate oxidase; flavoe 34.3 1.6E+02 0.0056 22.8 7.6 39 38-80 218-256 (368)
436 1rvk_A Isomerase/lactonizing e 34.3 80 0.0027 24.4 5.7 73 8-85 212-286 (382)
437 1p4c_A L(+)-mandelate dehydrog 34.2 1.6E+02 0.0055 22.9 7.4 69 6-80 233-306 (380)
438 4h5g_A Amino acid ABC superfam 34.1 55 0.0019 22.9 4.4 26 2-29 146-171 (243)
439 2otd_A Glycerophosphodiester p 34.1 1.3E+02 0.0044 21.6 7.2 38 39-81 198-235 (247)
440 2csu_A 457AA long hypothetical 34.1 1.8E+02 0.0062 23.3 9.8 83 9-98 356-447 (457)
441 3vkj_A Isopentenyl-diphosphate 34.0 1.7E+02 0.0057 22.8 9.4 68 9-81 137-218 (368)
442 3n1u_A Hydrolase, HAD superfam 33.8 1.1E+02 0.0038 20.8 7.2 37 41-81 55-91 (191)
443 3bul_A Methionine synthase; tr 33.7 96 0.0033 26.0 6.3 68 8-81 137-211 (579)
444 2qfm_A Spermine synthase; sper 33.6 1.3E+02 0.0045 23.5 6.8 40 5-44 250-296 (364)
445 1kbi_A Cytochrome B2, L-LCR; f 33.6 2E+02 0.0067 23.5 9.2 75 6-83 351-435 (511)
446 2pp0_A L-talarate/galactarate 33.6 86 0.0029 24.5 5.8 72 8-84 232-304 (398)
447 2z08_A Universal stress protei 33.5 84 0.0029 19.7 5.0 43 10-58 89-136 (137)
448 3rhb_A ATGRXC5, glutaredoxin-C 33.5 47 0.0016 20.5 3.6 51 8-60 31-81 (113)
449 3qgm_A P-nitrophenyl phosphata 33.4 73 0.0025 22.6 5.1 51 22-76 7-67 (268)
450 2r6o_A Putative diguanylate cy 33.4 43 0.0015 25.1 3.9 86 6-94 184-278 (294)
451 4ab4_A Xenobiotic reductase B; 33.4 63 0.0021 25.2 4.9 59 12-79 247-305 (362)
452 1twd_A Copper homeostasis prot 33.4 1.5E+02 0.0051 22.1 7.4 85 4-93 6-111 (256)
453 3nav_A Tryptophan synthase alp 33.2 82 0.0028 23.5 5.4 42 38-82 197-238 (271)
454 4e5t_A Mandelate racemase / mu 32.9 77 0.0026 24.9 5.5 73 8-85 220-293 (404)
455 3gka_A N-ethylmaleimide reduct 32.9 65 0.0022 25.1 4.9 59 11-78 254-312 (361)
456 2d59_A Hypothetical protein PH 32.7 13 0.00044 24.9 0.7 19 64-82 91-109 (144)
457 3oy2_A Glycosyltransferase B73 32.7 1.6E+02 0.0055 22.2 7.3 75 9-98 264-355 (413)
458 2pq6_A UDP-glucuronosyl/UDP-gl 32.7 79 0.0027 25.2 5.6 42 10-62 104-149 (482)
459 2lqo_A Putative glutaredoxin R 32.7 85 0.0029 19.1 7.0 70 6-97 14-84 (92)
460 3vnd_A TSA, tryptophan synthas 32.6 90 0.0031 23.2 5.5 42 38-82 195-236 (267)
461 4gj1_A 1-(5-phosphoribosyl)-5- 32.5 1.4E+02 0.0048 21.6 9.8 80 9-92 153-241 (243)
462 3tj4_A Mandelate racemase; eno 32.4 1.7E+02 0.0059 22.5 9.9 80 8-92 209-289 (372)
463 1tkk_A Similar to chloromucona 32.4 1.4E+02 0.0048 22.8 6.8 72 8-84 197-271 (366)
464 3rr1_A GALD, putative D-galact 32.3 80 0.0027 24.9 5.4 80 8-92 190-270 (405)
465 1mjh_A Protein (ATP-binding do 32.3 1E+02 0.0035 19.9 6.1 46 9-60 109-159 (162)
466 1vhn_A Putative flavin oxidore 32.3 81 0.0028 23.8 5.3 62 11-79 144-211 (318)
467 1tqj_A Ribulose-phosphate 3-ep 32.1 67 0.0023 23.1 4.6 59 22-81 134-201 (230)
468 2pr7_A Haloacid dehalogenase/e 32.1 62 0.0021 20.0 4.1 39 23-65 2-47 (137)
469 1zcc_A Glycerophosphodiester p 32.1 1.4E+02 0.0048 21.4 7.0 49 39-94 185-234 (248)
470 3c2e_A Nicotinate-nucleotide p 32.0 51 0.0017 25.0 4.1 66 3-78 203-274 (294)
471 2zad_A Muconate cycloisomerase 32.0 76 0.0026 24.2 5.2 80 8-93 194-276 (345)
472 1gte_A Dihydropyrimidine dehyd 32.0 1.5E+02 0.0051 26.4 7.6 68 8-80 649-734 (1025)
473 3jy6_A Transcriptional regulat 32.0 1.4E+02 0.0046 21.2 7.1 22 10-33 75-96 (276)
474 2qdd_A Mandelate racemase/muco 31.6 1.1E+02 0.0038 23.6 6.1 69 8-85 202-271 (378)
475 3tsa_A SPNG, NDP-rhamnosyltran 31.5 1.1E+02 0.0039 22.9 6.1 48 51-98 305-356 (391)
476 2ps2_A Putative mandelate race 31.4 1.3E+02 0.0044 23.1 6.5 71 8-85 202-273 (371)
477 3iuu_A MLRC-like, putative met 31.4 54 0.0019 26.9 4.3 75 21-97 95-178 (495)
478 3tqp_A Enolase; energy metabol 31.3 1.5E+02 0.0052 23.6 7.0 80 8-91 264-347 (428)
479 3r8r_A Transaldolase; pentose 31.3 97 0.0033 22.3 5.3 73 4-82 108-187 (212)
480 3ekg_A Mandelate racemase/muco 31.1 1.3E+02 0.0044 23.8 6.4 79 8-91 222-303 (404)
481 4h1z_A Enolase Q92ZS5; dehydra 31.1 1.9E+02 0.0065 22.7 7.7 71 8-83 244-314 (412)
482 2ozt_A TLR1174 protein; struct 31.1 1.3E+02 0.0043 22.9 6.3 77 8-89 173-253 (332)
483 4hjf_A Ggdef family protein; s 31.0 43 0.0015 25.7 3.6 75 21-96 246-329 (340)
484 1sxj_D Activator 1 41 kDa subu 30.9 64 0.0022 24.0 4.6 72 22-98 133-207 (353)
485 3sbf_A Mandelate racemase / mu 30.9 74 0.0025 25.0 5.0 73 8-85 213-286 (401)
486 1chr_A Chloromuconate cycloiso 30.8 1.5E+02 0.0052 22.8 6.8 80 9-93 201-284 (370)
487 3iv3_A Tagatose 1,6-diphosphat 30.8 64 0.0022 25.0 4.5 60 21-80 202-279 (332)
488 3bw2_A 2-nitropropane dioxygen 30.8 1.8E+02 0.0062 22.3 9.7 61 9-80 111-171 (369)
489 2nzl_A Hydroxyacid oxidase 1; 30.7 2E+02 0.0067 22.6 7.8 39 38-80 241-279 (392)
490 3l9w_A Glutathione-regulated p 30.6 1E+02 0.0036 24.3 5.9 55 21-80 67-121 (413)
491 2qde_A Mandelate racemase/muco 30.5 97 0.0033 24.1 5.6 73 8-85 201-274 (397)
492 3dg3_A Muconate cycloisomerase 30.5 1.3E+02 0.0044 23.2 6.3 73 8-85 197-270 (367)
493 2hy7_A Glucuronosyltransferase 30.5 1.4E+02 0.0048 23.0 6.6 75 9-100 275-354 (406)
494 3lab_A Putative KDPG (2-keto-3 30.5 1.5E+02 0.0052 21.3 11.4 81 6-94 21-104 (217)
495 3nzn_A Glutaredoxin; structura 30.3 17 0.00058 22.4 1.0 51 7-59 33-84 (103)
496 3fs2_A 2-dehydro-3-deoxyphosph 30.2 1.8E+02 0.006 22.2 6.8 67 8-82 170-262 (298)
497 3i4k_A Muconate lactonizing en 30.2 1.3E+02 0.0043 23.4 6.2 75 9-88 207-282 (383)
498 1sgj_A Citrate lyase, beta sub 30.1 1.7E+02 0.0057 21.7 6.8 81 11-94 20-114 (284)
499 1vgv_A UDP-N-acetylglucosamine 30.1 1E+02 0.0036 23.0 5.7 42 51-98 300-342 (384)
500 2oz8_A MLL7089 protein; struct 30.1 91 0.0031 24.3 5.4 82 8-95 202-286 (389)
No 1
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=99.93 E-value=1.3e-25 Score=156.76 Aligned_cols=94 Identities=24% Similarity=0.507 Sum_probs=88.7
Q ss_pred EEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCC
Q 044790 3 VIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKP 82 (162)
Q Consensus 3 v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP 82 (162)
|..|.+|.+|++.+++ .+||+||+|+.||+|+|++++++||+....+++|||++|+....+...++++.|+++||.||
T Consensus 40 v~~a~~g~~al~~~~~--~~~DlillD~~MP~mdG~el~~~ir~~~~~~~ipvI~lTa~~~~~~~~~~~~~Ga~~yl~KP 117 (134)
T 3to5_A 40 TQEADDGLTALPMLKK--GDFDFVVTDWNMPGMQGIDLLKNIRADEELKHLPVLMITAEAKREQIIEAAQAGVNGYIVKP 117 (134)
T ss_dssp EEEESSHHHHHHHHHH--HCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTCCEEEEESSCCHHHHHHHHHTTCCEEEESS
T ss_pred EEEECCHHHHHHHHHh--CCCCEEEEcCCCCCCCHHHHHHHHHhCCCCCCCeEEEEECCCCHHHHHHHHHCCCCEEEECC
Confidence 6689999999999999 89999999999999999999999998777789999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHh
Q 044790 83 IRKNELQNLWQHVWRK 98 (162)
Q Consensus 83 ~~~~~L~~~i~~~l~~ 98 (162)
|+.++|..+|++++++
T Consensus 118 ~~~~~L~~~i~~~l~R 133 (134)
T 3to5_A 118 FTAATLKEKLDKIFER 133 (134)
T ss_dssp CCHHHHHHHHHHHCC-
T ss_pred CCHHHHHHHHHHHHhc
Confidence 9999999999998754
No 2
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=99.88 E-value=1.4e-21 Score=132.58 Aligned_cols=95 Identities=27% Similarity=0.424 Sum_probs=89.3
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|+|..+.++.+|++.+.. ..||+||+|+.||+++|++++++||+....+.+|||++|+....+...++++.|+++||.
T Consensus 27 ~~v~~~~~~~~al~~l~~--~~~dlvllD~~~p~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~~Ga~~~l~ 104 (122)
T 3gl9_A 27 YEVIEAENGQIALEKLSE--FTPDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGARKVMR 104 (122)
T ss_dssp CEEEEESSHHHHHHHHTT--BCCSEEEECSCCSSSCHHHHHHHHHTSTTTTTSCEEEEESCCSHHHHHHHHHTTCSEEEE
T ss_pred cEEEEeCCHHHHHHHHHh--cCCCEEEEeccCCCCcHHHHHHHHHhcccccCCCEEEEecCCchHHHHHHHhcChhhhcc
Confidence 678899999999999988 889999999999999999999999987656789999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHH
Q 044790 81 KPIRKNELQNLWQHVWR 97 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l~ 97 (162)
||++.++|..+|+++++
T Consensus 105 KP~~~~~L~~~i~~~l~ 121 (122)
T 3gl9_A 105 KPFSPSQFIEEVKHLLN 121 (122)
T ss_dssp SSCCHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHhc
Confidence 99999999999998764
No 3
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=99.87 E-value=3.7e-21 Score=132.83 Aligned_cols=99 Identities=21% Similarity=0.400 Sum_probs=90.4
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|+|..+.++.+|++.+.. ..||+||+|+.||+++|++++++||+....+.+|||++|+..+.....++++.|+++||.
T Consensus 29 ~~v~~~~~~~~al~~~~~--~~~dlvl~D~~lp~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~~~~~ga~~~l~ 106 (136)
T 3t6k_A 29 YEVRRAASGEEALQQIYK--NLPDALICDVLLPGIDGYTLCKRVRQHPLTKTLPILMLTAQGDISAKIAGFEAGANDYLA 106 (136)
T ss_dssp CEEEEESSHHHHHHHHHH--SCCSEEEEESCCSSSCHHHHHHHHHHSGGGTTCCEEEEECTTCHHHHHHHHHHTCSEEEE
T ss_pred CEEEEeCCHHHHHHHHHh--CCCCEEEEeCCCCCCCHHHHHHHHHcCCCcCCccEEEEecCCCHHHHHHHHhcCcceEEe
Confidence 678999999999999998 899999999999999999999999986444789999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhccC
Q 044790 81 KPIRKNELQNLWQHVWRKCHS 101 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l~~~~~ 101 (162)
||++.++|..+|+.++++...
T Consensus 107 KP~~~~~L~~~i~~~l~~~~~ 127 (136)
T 3t6k_A 107 KPFEPQELVYRVKNILARTTI 127 (136)
T ss_dssp TTCCHHHHHHHHHHHHHC---
T ss_pred CCCCHHHHHHHHHHHHhccCC
Confidence 999999999999999887543
No 4
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=99.85 E-value=2.2e-20 Score=126.22 Aligned_cols=93 Identities=26% Similarity=0.420 Sum_probs=87.1
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|+|..+.++.+|++.+.. .+||+||+|+.||+++|++++++||+. ..+|||++|+..+.....++++.|+++||.
T Consensus 27 ~~v~~~~~~~~al~~~~~--~~~dlii~D~~~p~~~g~~~~~~lr~~---~~~~ii~~t~~~~~~~~~~~~~~ga~~~l~ 101 (120)
T 3f6p_A 27 YEVHCAHDGNEAVEMVEE--LQPDLILLDIMLPNKDGVEVCREVRKK---YDMPIIMLTAKDSEIDKVIGLEIGADDYVT 101 (120)
T ss_dssp CEEEEESSHHHHHHHHHT--TCCSEEEEETTSTTTHHHHHHHHHHTT---CCSCEEEEEESSCHHHHHHHHHTTCCEEEE
T ss_pred EEEEEeCCHHHHHHHHhh--CCCCEEEEeCCCCCCCHHHHHHHHHhc---CCCCEEEEECCCChHHHHHHHhCCcceeEc
Confidence 678899999999999998 899999999999999999999999974 478999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHh
Q 044790 81 KPIRKNELQNLWQHVWRK 98 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l~~ 98 (162)
||++.++|..+|++++++
T Consensus 102 KP~~~~~l~~~i~~~l~~ 119 (120)
T 3f6p_A 102 KPFSTRELLARVKANLRR 119 (120)
T ss_dssp ESCCHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHhc
Confidence 999999999999988764
No 5
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=99.83 E-value=9e-20 Score=124.51 Aligned_cols=96 Identities=26% Similarity=0.522 Sum_probs=87.4
Q ss_pred EEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeC
Q 044790 2 AVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVK 81 (162)
Q Consensus 2 ~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~K 81 (162)
.|..+.++.++++.+... ..||+||+|+.||+++|++++++||+....+.+|||++|+..+.....++++.|+++||.|
T Consensus 32 ~v~~~~~~~~a~~~~~~~-~~~dlvi~D~~~p~~~g~~~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~K 110 (129)
T 3h1g_A 32 DVLEAEHGVEAWEKLDAN-ADTKVLITDWNMPEMNGLDLVKKVRSDSRFKEIPIIMITAEGGKAEVITALKAGVNNYIVK 110 (129)
T ss_dssp CEEEESSHHHHHHHHHHC-TTCCEEEECSCCSSSCHHHHHHHHHTSTTCTTCCEEEEESCCSHHHHHHHHHHTCCEEEES
T ss_pred EEEEeCCHHHHHHHHHhC-CCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeEEEEeCCCChHHHHHHHHcCccEEEeC
Confidence 377899999999998761 3799999999999999999999999865557899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHh
Q 044790 82 PIRKNELQNLWQHVWRK 98 (162)
Q Consensus 82 P~~~~~L~~~i~~~l~~ 98 (162)
|++.++|..+|+.++.+
T Consensus 111 P~~~~~L~~~l~~~l~~ 127 (129)
T 3h1g_A 111 PFTPQVLKEKLEVVLGT 127 (129)
T ss_dssp CCCHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHhcc
Confidence 99999999999998754
No 6
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=99.83 E-value=1.7e-19 Score=126.97 Aligned_cols=100 Identities=26% Similarity=0.387 Sum_probs=93.2
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|+|..+.++.+|++.+.. .+||+||+|+.||+++|+++++.||+....+.+|||++|+....+...+++..|+++||.
T Consensus 32 ~~v~~~~~~~~al~~l~~--~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~ 109 (154)
T 3gt7_A 32 YQTEHVRNGREAVRFLSL--TRPDLIISDVLMPEMDGYALCRWLKGQPDLRTIPVILLTILSDPRDVVRSLECGADDFIT 109 (154)
T ss_dssp CEEEEESSHHHHHHHHTT--CCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEEEECCCSHHHHHHHHHHCCSEEEE
T ss_pred CEEEEeCCHHHHHHHHHh--CCCCEEEEeCCCCCCCHHHHHHHHHhCCCcCCCCEEEEECCCChHHHHHHHHCCCCEEEe
Confidence 678999999999999998 899999999999999999999999987656799999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhccCC
Q 044790 81 KPIRKNELQNLWQHVWRKCHSS 102 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l~~~~~~ 102 (162)
||++.++|..+|+.++++....
T Consensus 110 KP~~~~~l~~~i~~~l~~~~~~ 131 (154)
T 3gt7_A 110 KPCKDVVLASHVKRLLSGVKRT 131 (154)
T ss_dssp SSCCHHHHHHHHHHHHHHTCCC
T ss_pred CCCCHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999886543
No 7
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=99.83 E-value=4.7e-22 Score=136.67 Aligned_cols=88 Identities=17% Similarity=0.257 Sum_probs=76.9
Q ss_pred CEEE-EEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEE
Q 044790 1 MAVI-AVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFL 79 (162)
Q Consensus 1 ~~v~-~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l 79 (162)
|+|. .|.+|.+|++.+++ .+||+||+|+.||+++|++++++||+ +++|||++|++.+... +.++|+.+||
T Consensus 33 ~~v~~~a~~g~eAl~~~~~--~~~DlvllDi~mP~~~G~el~~~lr~----~~ipvI~lTa~~~~~~---~~~~g~~~yl 103 (123)
T 2lpm_A 33 HEVAATASRMQEALDIARK--GQFDIAIIDVNLDGEPSYPVADILAE----RNVPFIFATGYGSKGL---DTRYSNIPLL 103 (123)
T ss_dssp CCCCBCSCCHHHHHHHHHH--CCSSEEEECSSSSSCCSHHHHHHHHH----TCCSSCCBCTTCTTSC---CSSSCSCSCB
T ss_pred CEEEEEECCHHHHHHHHHh--CCCCEEEEecCCCCCCHHHHHHHHHc----CCCCEEEEecCccHHH---HHhCCCCcEE
Confidence 4554 78999999999999 89999999999999999999999997 4689999999876543 3467999999
Q ss_pred eCCCCHHHHHHHHHHHHH
Q 044790 80 VKPIRKNELQNLWQHVWR 97 (162)
Q Consensus 80 ~KP~~~~~L~~~i~~~l~ 97 (162)
.|||+.++|..+|+++++
T Consensus 104 ~KP~~~~~L~~~l~~~~~ 121 (123)
T 2lpm_A 104 TKPFLDSELEAVLVQISK 121 (123)
T ss_dssp CSSSSHHHHHHHHSTTCS
T ss_pred ECCCCHHHHHHHHHHHHh
Confidence 999999999999976543
No 8
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=99.83 E-value=2e-19 Score=122.06 Aligned_cols=95 Identities=24% Similarity=0.395 Sum_probs=88.5
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|.|..+.++.++++.+.. ..||+||+|+.||+++|++++++|++.. +.+|||++|+..+.....++++.|+++||.
T Consensus 28 ~~v~~~~~~~~~~~~~~~--~~~dlvi~D~~l~~~~g~~~~~~l~~~~--~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~ 103 (126)
T 1dbw_A 28 FAVKMHQSAEAFLAFAPD--VRNGVLVTDLRMPDMSGVELLRNLGDLK--INIPSIVITGHGDVPMAVEAMKAGAVDFIE 103 (126)
T ss_dssp CEEEEESCHHHHHHHGGG--CCSEEEEEECCSTTSCHHHHHHHHHHTT--CCCCEEEEECTTCHHHHHHHHHTTCSEEEE
T ss_pred cEEEEeCCHHHHHHHHhc--CCCCEEEEECCCCCCCHHHHHHHHHhcC--CCCCEEEEECCCCHHHHHHHHHhCHHHhee
Confidence 578899999999999988 7899999999999999999999999865 789999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhc
Q 044790 81 KPIRKNELQNLWQHVWRKC 99 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l~~~ 99 (162)
||++.++|..+|+.++++.
T Consensus 104 Kp~~~~~l~~~i~~~~~~~ 122 (126)
T 1dbw_A 104 KPFEDTVIIEAIERASEHL 122 (126)
T ss_dssp SSCCHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHhh
Confidence 9999999999999987654
No 9
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=99.83 E-value=3.3e-19 Score=119.69 Aligned_cols=95 Identities=21% Similarity=0.351 Sum_probs=88.9
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|+|..+.++.++++.+.. ..||++|+|+.||+++|+++++.|+... +.+|||++|+........++++.|+++|+.
T Consensus 25 ~~v~~~~~~~~a~~~~~~--~~~dlil~D~~l~~~~g~~~~~~l~~~~--~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~ 100 (121)
T 2pl1_A 25 HQVDDAEDAKEADYYLNE--HIPDIAIVDLGLPDEDGLSLIRRWRSND--VSLPILVLTARESWQDKVEVLSAGADDYVT 100 (121)
T ss_dssp CEEEEESSHHHHHHHHHH--SCCSEEEECSCCSSSCHHHHHHHHHHTT--CCSCEEEEESCCCHHHHHHHHHTTCSEEEE
T ss_pred CEEEEeCCHHHHHHHHhc--cCCCEEEEecCCCCCCHHHHHHHHHhcC--CCCCEEEEecCCCHHHHHHHHHcCccceEE
Confidence 578899999999999998 8899999999999999999999999765 789999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhc
Q 044790 81 KPIRKNELQNLWQHVWRKC 99 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l~~~ 99 (162)
||++.++|..+|+.++++.
T Consensus 101 kp~~~~~l~~~i~~~~~~~ 119 (121)
T 2pl1_A 101 KPFHIEEVMARMQALMRRN 119 (121)
T ss_dssp SSCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhh
Confidence 9999999999999988764
No 10
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.83 E-value=8.6e-20 Score=139.60 Aligned_cols=101 Identities=27% Similarity=0.377 Sum_probs=90.9
Q ss_pred CEEEEEcCHHHHHHHHHhhCCC-ccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEE
Q 044790 1 MAVIAVENGLQAWKILEDLMDQ-IDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFL 79 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~-~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l 79 (162)
|.|..+.++.+|++.+.. .+ ||+||+|+.||+++|++++++||+......+|||++|+........++++.||++||
T Consensus 149 ~~v~~a~~~~eal~~l~~--~~~~dlvllD~~mP~~dG~~l~~~lr~~~~~~~~~ii~~s~~~~~~~~~~a~~~Ga~~yl 226 (259)
T 3luf_A 149 LQVHEASHAREALATLEQ--HPAIRLVLVDYYMPEIDGISLVRMLRERYSKQQLAIIGISVSDKRGLSARYLKQGANDFL 226 (259)
T ss_dssp CEEEEESSHHHHHHHHHH--CTTEEEEEECSCCSSSCHHHHHHHHHHHCCTTTSEEEEEECSSSSSHHHHHHHTTCSEEE
T ss_pred cEEEEeCCHHHHHHHHhc--CCCCCEEEEcCCCCCCCHHHHHHHHHhccCCCCCeEEEEEccCCHHHHHHHHhcChhheE
Confidence 578899999999999987 64 899999999999999999999998764457999999999999999999999999999
Q ss_pred eCCCCHHHHHHHHHHHHHhccCCC
Q 044790 80 VKPIRKNELQNLWQHVWRKCHSSS 103 (162)
Q Consensus 80 ~KP~~~~~L~~~i~~~l~~~~~~~ 103 (162)
.||++.++|..+|++++++.....
T Consensus 227 ~KP~~~~~L~~~i~~~l~~~~~~~ 250 (259)
T 3luf_A 227 NQPFEPEELQCRVSHNLEALEQFN 250 (259)
T ss_dssp ESSCCHHHHHHHHHHHHHHHHC--
T ss_pred cCCCCHHHHHHHHHHHHHhHhhhc
Confidence 999999999999999998765443
No 11
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=99.83 E-value=2.3e-19 Score=122.90 Aligned_cols=96 Identities=19% Similarity=0.283 Sum_probs=89.6
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|+|..+.++.++++.+.. ..||+||+|+.||+++|++++++|++.. +.+|||++|+........++++.|+++||.
T Consensus 28 ~~v~~~~~~~~al~~~~~--~~~dlvl~D~~l~~~~g~~~~~~l~~~~--~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~ 103 (132)
T 3crn_A 28 YEVEIAATAGEGLAKIEN--EFFNLALFXIKLPDMEGTELLEKAHKLR--PGMKKIMVTGYASLENSVFSLNAGADAYIM 103 (132)
T ss_dssp CEEEEESSHHHHHHHHHH--SCCSEEEECSBCSSSBHHHHHHHHHHHC--TTSEEEEEESCCCHHHHHHHHHTTCSEEEE
T ss_pred ceEEEeCCHHHHHHHHhc--CCCCEEEEecCCCCCchHHHHHHHHhhC--CCCcEEEEeccccHHHHHHHHhccchhhcc
Confidence 578899999999999998 8899999999999999999999999865 789999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcc
Q 044790 81 KPIRKNELQNLWQHVWRKCH 100 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l~~~~ 100 (162)
||++.++|..+|+.++++..
T Consensus 104 KP~~~~~L~~~i~~~~~~~~ 123 (132)
T 3crn_A 104 KPVNPRDLLEKIKEKLDEQE 123 (132)
T ss_dssp SSCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhccc
Confidence 99999999999999887653
No 12
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=99.83 E-value=1.4e-19 Score=124.11 Aligned_cols=97 Identities=22% Similarity=0.341 Sum_probs=86.4
Q ss_pred EEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeC
Q 044790 2 AVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVK 81 (162)
Q Consensus 2 ~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~K 81 (162)
.|..+.++.++++.+.. ..||+||+|+.||+++|++++++||+.. +.+|||++|+........++++.|+++||.|
T Consensus 31 ~v~~~~~~~~al~~~~~--~~~dlvilD~~lp~~~g~~~~~~l~~~~--~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~K 106 (133)
T 3b2n_A 31 ILADTDNGLDAMKLIEE--YNPNVVILDIEMPGMTGLEVLAEIRKKH--LNIKVIIVTTFKRPGYFEKAVVNDVDAYVLK 106 (133)
T ss_dssp EEEEESCHHHHHHHHHH--HCCSEEEECSSCSSSCHHHHHHHHHHTT--CSCEEEEEESCCCHHHHHHHHHTTCSEEEET
T ss_pred EEEEcCCHHHHHHHHhh--cCCCEEEEecCCCCCCHHHHHHHHHHHC--CCCcEEEEecCCCHHHHHHHHHcCCcEEEEC
Confidence 35689999999999988 7899999999999999999999999854 7899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhccCC
Q 044790 82 PIRKNELQNLWQHVWRKCHSS 102 (162)
Q Consensus 82 P~~~~~L~~~i~~~l~~~~~~ 102 (162)
|++.++|..+|++++++....
T Consensus 107 p~~~~~L~~~i~~~~~~~~~~ 127 (133)
T 3b2n_A 107 ERSIEELVETINKVNNGEKEG 127 (133)
T ss_dssp TSCHHHHHHHHHHHHC-----
T ss_pred CCCHHHHHHHHHHHHcCCCcc
Confidence 999999999999988765443
No 13
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=99.82 E-value=2.7e-20 Score=135.00 Aligned_cols=95 Identities=16% Similarity=0.274 Sum_probs=89.7
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|+|..+.++.+|++.+.. ..||+||+|+.||+++|++++++||+.. +.+|||++|+..+.+...+++..|+++||.
T Consensus 32 ~~v~~~~~~~~al~~~~~--~~~dlvl~D~~lp~~~g~~~~~~l~~~~--~~~~ii~lt~~~~~~~~~~a~~~Ga~~~l~ 107 (184)
T 3rqi_A 32 YAVRQAHNKDEALKLAGA--EKFEFITVXLHLGNDSGLSLIAPLCDLQ--PDARILVLTGYASIATAVQAVKDGADNYLA 107 (184)
T ss_dssp CEEEEECSHHHHHHHHTT--SCCSEEEECSEETTEESHHHHHHHHHHC--TTCEEEEEESSCCHHHHHHHHHHTCSEEEE
T ss_pred CEEEEeCCHHHHHHHHhh--CCCCEEEEeccCCCccHHHHHHHHHhcC--CCCCEEEEeCCCCHHHHHHHHHhCHHHhee
Confidence 678999999999999988 8899999999999999999999999865 799999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhc
Q 044790 81 KPIRKNELQNLWQHVWRKC 99 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l~~~ 99 (162)
||++.++|..+|+.++++.
T Consensus 108 KP~~~~~L~~~i~~~~~~~ 126 (184)
T 3rqi_A 108 KPANVESILAALQTNASEV 126 (184)
T ss_dssp SSCCHHHHHHHTSTTHHHH
T ss_pred CCCCHHHHHHHHHHHHHHh
Confidence 9999999999999887764
No 14
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.82 E-value=2.1e-19 Score=124.12 Aligned_cols=96 Identities=25% Similarity=0.417 Sum_probs=89.5
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|+|..+.++.+|++.+.. ..||+||+|+.||+++|++++++|++.. +.+|||++|+....+....+++.|+++||.
T Consensus 29 ~~v~~~~~~~~a~~~l~~--~~~dlvllD~~l~~~~g~~l~~~l~~~~--~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~ 104 (137)
T 3cfy_A 29 YDIFHVETGRDAIQFIER--SKPQLIILDLKLPDMSGEDVLDWINQND--IPTSVIIATAHGSVDLAVNLIQKGAEDFLE 104 (137)
T ss_dssp SEEEEESSHHHHHHHHHH--HCCSEEEECSBCSSSBHHHHHHHHHHTT--CCCEEEEEESSCCHHHHHHHHHTTCSEEEE
T ss_pred ceEEEeCCHHHHHHHHHh--cCCCEEEEecCCCCCCHHHHHHHHHhcC--CCCCEEEEEecCcHHHHHHHHHCCccEEEe
Confidence 578899999999999998 7899999999999999999999999865 789999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcc
Q 044790 81 KPIRKNELQNLWQHVWRKCH 100 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l~~~~ 100 (162)
||++.++|..+|+.++++..
T Consensus 105 KP~~~~~L~~~i~~~~~~~~ 124 (137)
T 3cfy_A 105 KPINADRLKTSVALHLKRAK 124 (137)
T ss_dssp SSCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999887653
No 15
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=99.82 E-value=3.4e-19 Score=123.97 Aligned_cols=96 Identities=21% Similarity=0.396 Sum_probs=86.3
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHcc--CCCCCCcEEEEecCCCHHHHHHHHHcCCceE
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNH--KTCKNIPVIMMSSHDSMSIVFKCLSKGAVYF 78 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~--~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~ 78 (162)
|.|..+.++.+|++.+.. ..||+||+|+.||+++|++++++||.. ...+.+|||++|+....+...++++.|+++|
T Consensus 39 ~~v~~~~~~~~al~~~~~--~~~dlvl~D~~mp~~~g~~~~~~lr~~~~~~~~~~pii~~s~~~~~~~~~~~~~~Ga~~~ 116 (143)
T 3m6m_D 39 HKVLCVNGAEQVLDAMAE--EDYDAVIVDLHMPGMNGLDMLKQLRVMQASGMRYTPVVVLSADVTPEAIRACEQAGARAF 116 (143)
T ss_dssp CEEEEESSHHHHHHHHHH--SCCSEEEEESCCSSSCHHHHHHHHHHHHHTTCCCCCEEEEESCCCHHHHHHHHHTTCSEE
T ss_pred CeEEEeCCHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHhchhccCCCCeEEEEeCCCCHHHHHHHHHcChhhe
Confidence 578899999999999998 899999999999999999999999853 2336789999999999999999999999999
Q ss_pred EeCCCCHHHHHHHHHHHHHh
Q 044790 79 LVKPIRKNELQNLWQHVWRK 98 (162)
Q Consensus 79 l~KP~~~~~L~~~i~~~l~~ 98 (162)
|.||++.++|...|..+...
T Consensus 117 l~KP~~~~~L~~~l~~~~~~ 136 (143)
T 3m6m_D 117 LAKPVVAAKLLDTLADLAVS 136 (143)
T ss_dssp EESSCCHHHHHHHHHHHC--
T ss_pred eeCCCCHHHHHHHHHHHHHh
Confidence 99999999999999987654
No 16
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=99.81 E-value=5.2e-19 Score=121.52 Aligned_cols=97 Identities=20% Similarity=0.383 Sum_probs=84.9
Q ss_pred EEEEEcCHHHHHHHHHhh---CCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceE
Q 044790 2 AVIAVENGLQAWKILEDL---MDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYF 78 (162)
Q Consensus 2 ~v~~a~~~~eal~~l~~~---~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~ 78 (162)
.|..+.++.+|++.+... ...||+||+|+.||+++|++++++||+... +.+|||++|+..+.....++++.|+++|
T Consensus 29 ~v~~~~~~~~al~~~~~~~~~~~~~dlvllD~~mp~~~G~~~~~~lr~~~~-~~~~ii~lt~~~~~~~~~~~~~~ga~~~ 107 (133)
T 2r25_B 29 NIELACDGQEAFDKVKELTSKGENYNMIFMDVQMPKVDGLLSTKMIRRDLG-YTSPIVALTAFADDSNIKECLESGMNGF 107 (133)
T ss_dssp CEEEESSHHHHHHHHHHHHHHTCCCSEEEECSCCSSSCHHHHHHHHHHHSC-CCSCEEEEESCCSHHHHHHHHHTTCSEE
T ss_pred eEEEECCHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCChHHHHHHHHhhcC-CCCCEEEEECCCCHHHHHHHHHcCCCEE
Confidence 377899999999988641 136999999999999999999999997321 5789999999999999999999999999
Q ss_pred EeCCCCHHHHHHHHHHHHHhc
Q 044790 79 LVKPIRKNELQNLWQHVWRKC 99 (162)
Q Consensus 79 l~KP~~~~~L~~~i~~~l~~~ 99 (162)
|.||++.++|...|++++...
T Consensus 108 l~KP~~~~~L~~~l~~~~~~~ 128 (133)
T 2r25_B 108 LSKPIKRPKLKTILTEFCAAY 128 (133)
T ss_dssp EESSCCHHHHHHHHHHHCTTC
T ss_pred EeCCCCHHHHHHHHHHHHHhh
Confidence 999999999999999886544
No 17
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=99.81 E-value=3e-19 Score=121.97 Aligned_cols=100 Identities=18% Similarity=0.234 Sum_probs=86.2
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|+|..+.++.+|++.+.+ .+||+||+|+.||+++|++++++||+....+.+|||++|+...... ..++..|+++||.
T Consensus 28 ~~v~~~~~~~~a~~~l~~--~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~-~~~~~~g~~~~l~ 104 (133)
T 3nhm_A 28 FDCTTAADGASGLQQALA--HPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFVSGYAPRTE-GPADQPVPDAYLV 104 (133)
T ss_dssp SEEEEESSHHHHHHHHHH--SCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEEESCCC------TTSCCCSEEEE
T ss_pred cEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEEeCCCcHhH-HHHhhcCCceEEe
Confidence 578899999999999998 8999999999999999999999999875457999999999887777 8899999999999
Q ss_pred CCCCHHHHHHHHHHHHHhccCCC
Q 044790 81 KPIRKNELQNLWQHVWRKCHSSS 103 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l~~~~~~~ 103 (162)
||++.++|..+|+.++++.....
T Consensus 105 KP~~~~~l~~~i~~~l~~~~~~~ 127 (133)
T 3nhm_A 105 KPVKPPVLIAQLHALLARAEAEG 127 (133)
T ss_dssp SSCCHHHHHHHHHHHHHHHC---
T ss_pred ccCCHHHHHHHHHHHHhhhcccC
Confidence 99999999999999999875543
No 18
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=99.81 E-value=2.7e-19 Score=120.94 Aligned_cols=94 Identities=26% Similarity=0.455 Sum_probs=87.3
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|+|..+.++.++++.+.. ..||+||+|+.||+++|+++++.|++.. +.+|||++|+..+.....++++.|+++||.
T Consensus 28 ~~v~~~~~~~~a~~~~~~--~~~dlvl~D~~l~~~~g~~~~~~l~~~~--~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~ 103 (124)
T 1srr_A 28 YQTFQAANGLQALDIVTK--ERPDLVLLDMKIPGMDGIEILKRMKVID--ENIRVIIMTAYGELDMIQESKELGALTHFA 103 (124)
T ss_dssp CEEEEESSHHHHHHHHHH--HCCSEEEEESCCTTCCHHHHHHHHHHHC--TTCEEEEEESSCCHHHHHHHHHHTCCCEEE
T ss_pred cEEEEeCCHHHHHHHHhc--cCCCEEEEecCCCCCCHHHHHHHHHHhC--CCCCEEEEEccCchHHHHHHHhcChHhhcc
Confidence 578899999999999988 7899999999999999999999999865 789999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHh
Q 044790 81 KPIRKNELQNLWQHVWRK 98 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l~~ 98 (162)
||++.++|..+|++++++
T Consensus 104 KP~~~~~l~~~i~~~~~~ 121 (124)
T 1srr_A 104 KPFDIDEIRDAVKKYLPL 121 (124)
T ss_dssp SSCCHHHHHHHHHHHSCC
T ss_pred CCCCHHHHHHHHHHHhcc
Confidence 999999999999987643
No 19
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=99.81 E-value=9.6e-19 Score=122.28 Aligned_cols=99 Identities=20% Similarity=0.292 Sum_probs=88.7
Q ss_pred EEEEEcCHHHHHHHHHhh-----CCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCc
Q 044790 2 AVIAVENGLQAWKILEDL-----MDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAV 76 (162)
Q Consensus 2 ~v~~a~~~~eal~~l~~~-----~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~ 76 (162)
.|..+.++.++++.+... ...||+||+|+.||+++|+++++.||+....+.+|||++|+..+.....++++.|++
T Consensus 36 ~v~~~~~~~~al~~l~~~~~~~~~~~~dlillD~~lp~~~g~~l~~~l~~~~~~~~~piiils~~~~~~~~~~~~~~ga~ 115 (149)
T 1i3c_A 36 ELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLNLPKKDGREVLAEIKQNPDLKRIPVVVLTTSHNEDDVIASYELHVN 115 (149)
T ss_dssp EEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSCCSSSCHHHHHHHHHHCTTTTTSCEEEEESCCCHHHHHHHHHTTCS
T ss_pred cEEEeCCHHHHHHHHHhccccccCCCCCEEEEeCCCCCCcHHHHHHHHHhCcCcCCCeEEEEECCCChHHHHHHHHcCCc
Confidence 678999999999998741 036999999999999999999999998654468999999999999999999999999
Q ss_pred eEEeCCCCHHHHHHHHHHHHHhcc
Q 044790 77 YFLVKPIRKNELQNLWQHVWRKCH 100 (162)
Q Consensus 77 ~~l~KP~~~~~L~~~i~~~l~~~~ 100 (162)
+||.||++.++|..+|+.+++.+.
T Consensus 116 ~~l~KP~~~~~L~~~i~~~~~~~~ 139 (149)
T 1i3c_A 116 CYLTKSRNLKDLFKMVQGIESFWL 139 (149)
T ss_dssp EEEECCSSHHHHHHHHHHHHHHHT
T ss_pred EEEECCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999987654
No 20
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=99.81 E-value=8.8e-19 Score=122.60 Aligned_cols=100 Identities=21% Similarity=0.413 Sum_probs=91.3
Q ss_pred EEEEEcCHHHHHHHHH---------hhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHH
Q 044790 2 AVIAVENGLQAWKILE---------DLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLS 72 (162)
Q Consensus 2 ~v~~a~~~~eal~~l~---------~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~ 72 (162)
+|..+.++.+|++.++ . ..||+||+|+.||+++|+++++.||+....+.+|||++|+....+...++++
T Consensus 32 ~v~~~~~~~~al~~l~~~~~~~~~~~--~~~dliilD~~l~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~~~~ 109 (152)
T 3heb_A 32 EIIAFTDGTSALNYLFGDDKSGRVSA--GRAQLVLLDLNLPDMTGIDILKLVKENPHTRRSPVVILTTTDDQREIQRCYD 109 (152)
T ss_dssp CEEEESSHHHHHHHHHCTTSSSGGGT--TCBEEEEECSBCSSSBHHHHHHHHHHSTTTTTSCEEEEESCCCHHHHHHHHH
T ss_pred eEEEeCCHHHHHHHHhcccccccccc--CCCCEEEEeCCCCCCcHHHHHHHHHhcccccCCCEEEEecCCCHHHHHHHHH
Confidence 6889999999999996 4 6899999999999999999999999855558999999999999999999999
Q ss_pred cCCceEEeCCCCHHHHHHHHHHHHHhccCCC
Q 044790 73 KGAVYFLVKPIRKNELQNLWQHVWRKCHSSS 103 (162)
Q Consensus 73 ~Ga~~~l~KP~~~~~L~~~i~~~l~~~~~~~ 103 (162)
.|+++||.||++.++|..+|+++.+.+....
T Consensus 110 ~g~~~~l~KP~~~~~l~~~i~~~~~~~~~~~ 140 (152)
T 3heb_A 110 LGANVYITKPVNYENFANAIRQLGLFFSVMQ 140 (152)
T ss_dssp TTCSEEEECCSSHHHHHHHHHHHHHHHTTSC
T ss_pred CCCcEEEeCCCCHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999987765444
No 21
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=99.81 E-value=1e-18 Score=117.57 Aligned_cols=94 Identities=19% Similarity=0.335 Sum_probs=87.7
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|.|..+.++.++++.+.. ..||+||+|+.||+++|+++++.||+ . +.+|||++|+..+......+++.|+++||.
T Consensus 27 ~~v~~~~~~~~~~~~~~~--~~~dlvi~d~~l~~~~g~~~~~~l~~-~--~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~ 101 (122)
T 1zgz_A 27 YTVSVTASGAGLREIMQN--QSVDLILLDINLPDENGLMLTRALRE-R--STVGIILVTGRSDRIDRIVGLEMGADDYVT 101 (122)
T ss_dssp CEEEEESSHHHHHHHHHH--SCCSEEEEESCCSSSCHHHHHHHHHT-T--CCCEEEEEESSCCHHHHHHHHHHTCSEEEE
T ss_pred CeEEEecCHHHHHHHHhc--CCCCEEEEeCCCCCCChHHHHHHHHh-c--CCCCEEEEECCCChhhHHHHHHhCHHHHcc
Confidence 578899999999999988 88999999999999999999999998 3 689999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhc
Q 044790 81 KPIRKNELQNLWQHVWRKC 99 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l~~~ 99 (162)
||++.++|..+|+.++++.
T Consensus 102 Kp~~~~~l~~~i~~~~~~~ 120 (122)
T 1zgz_A 102 KPLELRELVVRVKNLLWRI 120 (122)
T ss_dssp SSCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHh
Confidence 9999999999999988764
No 22
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=99.81 E-value=4.8e-19 Score=122.78 Aligned_cols=100 Identities=14% Similarity=0.292 Sum_probs=92.3
Q ss_pred EEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeC
Q 044790 2 AVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVK 81 (162)
Q Consensus 2 ~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~K 81 (162)
.|..+.++.+|++.+.. ..||+||+|+.||+++|+++++.||+....+.+|||++|+..+.+...++++.|+++||.|
T Consensus 33 ~v~~~~~~~~a~~~l~~--~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~ga~~~l~K 110 (144)
T 3kht_A 33 QLEFVDNGAKALYQVQQ--AKYDLIILDIGLPIANGFEVMSAVRKPGANQHTPIVILTDNVSDDRAKQCMAAGASSVVDK 110 (144)
T ss_dssp EEEEESSHHHHHHHHTT--CCCSEEEECTTCGGGCHHHHHHHHHSSSTTTTCCEEEEETTCCHHHHHHHHHTTCSEEEEC
T ss_pred eEEEECCHHHHHHHhhc--CCCCEEEEeCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCHHHHHHHHHcCCCEEEEC
Confidence 37899999999999998 8999999999999999999999999854458999999999999999999999999999999
Q ss_pred CC-CHHHHHHHHHHHHHhccCCC
Q 044790 82 PI-RKNELQNLWQHVWRKCHSSS 103 (162)
Q Consensus 82 P~-~~~~L~~~i~~~l~~~~~~~ 103 (162)
|+ +.++|..+|+.+++++....
T Consensus 111 p~~~~~~l~~~i~~~l~~~~~~~ 133 (144)
T 3kht_A 111 SSNNVTDFYGRIYAIFSYWLTVN 133 (144)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHTS
T ss_pred CCCcHHHHHHHHHHHHHHHHhcc
Confidence 99 99999999999999875443
No 23
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=99.81 E-value=8.8e-19 Score=118.85 Aligned_cols=96 Identities=23% Similarity=0.427 Sum_probs=87.4
Q ss_pred EEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeC
Q 044790 2 AVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVK 81 (162)
Q Consensus 2 ~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~K 81 (162)
.|..+.++.++++.+.. ..||+||+|+.||+++|++++++||+....+.+|||++|+.........+++.|+++||.|
T Consensus 31 ~v~~~~~~~~a~~~~~~--~~~dlvi~D~~l~~~~g~~l~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~K 108 (128)
T 1jbe_A 31 NVEEAEDGVDALNKLQA--GGYGFVISDWNMPNMDGLELLKTIRAXXAMSALPVLMVTAEAKKENIIAAAQAGASGYVVK 108 (128)
T ss_dssp CEEEESSHHHHHHHHTT--CCCCEEEEESCCSSSCHHHHHHHHHC--CCTTCCEEEEESSCCHHHHHHHHHTTCSEEEES
T ss_pred EEEeeCCHHHHHHHHHh--cCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCcEEEEecCccHHHHHHHHHhCcCceeec
Confidence 57889999999999988 7899999999999999999999999854447899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhc
Q 044790 82 PIRKNELQNLWQHVWRKC 99 (162)
Q Consensus 82 P~~~~~L~~~i~~~l~~~ 99 (162)
|++.++|..+|++++++.
T Consensus 109 P~~~~~l~~~i~~~~~~~ 126 (128)
T 1jbe_A 109 PFTAATLEEKLNKIFEKL 126 (128)
T ss_dssp SCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHh
Confidence 999999999999988653
No 24
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=99.81 E-value=3.6e-19 Score=124.87 Aligned_cols=97 Identities=22% Similarity=0.394 Sum_probs=91.0
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcC-CceEE
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKG-AVYFL 79 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~G-a~~~l 79 (162)
|+|..+.++.+|++.+.. ..||+||+|+.||+++|+++++.||+.. +.+|||++|+..+.....+++..| +++||
T Consensus 39 ~~v~~~~~~~~a~~~l~~--~~~dlvi~D~~l~~~~g~~~~~~l~~~~--~~~~ii~~s~~~~~~~~~~~~~~g~~~~~l 114 (153)
T 3hv2_A 39 YTLHFARDATQALQLLAS--REVDLVISAAHLPQMDGPTLLARIHQQY--PSTTRILLTGDPDLKLIAKAINEGEIYRYL 114 (153)
T ss_dssp CEEEEESSHHHHHHHHHH--SCCSEEEEESCCSSSCHHHHHHHHHHHC--TTSEEEEECCCCCHHHHHHHHHTTCCSEEE
T ss_pred cEEEEECCHHHHHHHHHc--CCCCEEEEeCCCCcCcHHHHHHHHHhHC--CCCeEEEEECCCCHHHHHHHHhCCCcceEE
Confidence 678899999999999998 8999999999999999999999999865 899999999999999999999999 99999
Q ss_pred eCCCCHHHHHHHHHHHHHhccC
Q 044790 80 VKPIRKNELQNLWQHVWRKCHS 101 (162)
Q Consensus 80 ~KP~~~~~L~~~i~~~l~~~~~ 101 (162)
.||++.++|..+|+.++++...
T Consensus 115 ~KP~~~~~l~~~i~~~l~~~~~ 136 (153)
T 3hv2_A 115 SKPWDDQELLLALRQALEHQHS 136 (153)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHHhHH
Confidence 9999999999999999887543
No 25
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=99.81 E-value=2.5e-19 Score=120.80 Aligned_cols=96 Identities=18% Similarity=0.345 Sum_probs=82.6
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|+|..+.++.++++.+.. ..||+||+|+.||+++|++++++||+....+.+|||++|+.........+++.|+++||.
T Consensus 26 ~~v~~~~~~~~a~~~~~~--~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~ 103 (124)
T 1mb3_A 26 YETLQTREGLSALSIARE--NKPDLILMDIQLPEISGLEVTKWLKEDDDLAHIPVVAVTAFAMKGDEERIREGGCEAYIS 103 (124)
T ss_dssp CEEEEESCHHHHHHHHHH--HCCSEEEEESBCSSSBHHHHHHHHHHSTTTTTSCEEEEC------CHHHHHHHTCSEEEC
T ss_pred cEEEEeCCHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHcCccccCCcEEEEECCCCHHHHHHHHhCCCCEEEe
Confidence 578889999999999988 789999999999999999999999986545789999999988888889999999999999
Q ss_pred CCCCHHHHHHHHHHHHHh
Q 044790 81 KPIRKNELQNLWQHVWRK 98 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l~~ 98 (162)
||++.++|..+|+.++.+
T Consensus 104 KP~~~~~l~~~i~~~~~~ 121 (124)
T 1mb3_A 104 KPISVVHFLETIKRLLER 121 (124)
T ss_dssp SSCCHHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHHHHhc
Confidence 999999999999988754
No 26
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=99.81 E-value=4.3e-19 Score=134.34 Aligned_cols=97 Identities=24% Similarity=0.427 Sum_probs=91.2
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|+|..+.++.+|++.+.. ..||+||+|+.||+++|++++++||+.. +.+|||++|+..+......+++.|+++||.
T Consensus 48 ~~v~~~~~~~~al~~~~~--~~~dlvllD~~lp~~~g~~~~~~lr~~~--~~~~ii~lt~~~~~~~~~~~~~~Ga~~yl~ 123 (250)
T 3r0j_A 48 FEVYTATNGAQALDRARE--TRPDAVILDVXMPGMDGFGVLRRLRADG--IDAPALFLTARDSLQDKIAGLTLGGDDYVT 123 (250)
T ss_dssp CEEEEESSHHHHHHHHHH--HCCSEEEEESCCSSSCHHHHHHHHHHTT--CCCCEEEEECSTTHHHHHHHHTSTTCEEEE
T ss_pred CEEEEECCHHHHHHHHHh--CCCCEEEEeCCCCCCCHHHHHHHHHhcC--CCCCEEEEECCCCHHHHHHHHHcCCcEEEe
Confidence 678899999999999998 7899999999999999999999999875 789999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhccC
Q 044790 81 KPIRKNELQNLWQHVWRKCHS 101 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l~~~~~ 101 (162)
||++.++|..+|+.++++...
T Consensus 124 Kp~~~~~L~~~i~~~~~~~~~ 144 (250)
T 3r0j_A 124 KPFSLEEVVARLRVILRRAGK 144 (250)
T ss_dssp SSCCHHHHHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHHhhcc
Confidence 999999999999999987543
No 27
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=99.81 E-value=3.1e-20 Score=144.26 Aligned_cols=94 Identities=15% Similarity=0.257 Sum_probs=86.1
Q ss_pred CEEE-EEcCHHHHHHHHHhhCCCccEEEEcCCCC-CCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceE
Q 044790 1 MAVI-AVENGLQAWKILEDLMDQIDLVLTEVLMP-CLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYF 78 (162)
Q Consensus 1 ~~v~-~a~~~~eal~~l~~~~~~~DlvllD~~mp-~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~ 78 (162)
|+|. .+.+|.+|++.+.. .+|||||+|+.|| +|+|+++++.||+.. .+|||++|+.. +...++++.|+++|
T Consensus 185 ~~v~~~a~~g~eAl~~~~~--~~~dlvl~D~~MPd~mdG~e~~~~ir~~~---~~piI~lT~~~--~~~~~~~~~G~~~~ 257 (286)
T 3n0r_A 185 HDVTDIAATRGEALEAVTR--RTPGLVLADIQLADGSSGIDAVKDILGRM---DVPVIFITAFP--ERLLTGERPEPTFL 257 (286)
T ss_dssp CEEEEEESSHHHHHHHHHH--CCCSEEEEESCCTTSCCTTTTTHHHHHHT---TCCEEEEESCG--GGGCCSSSCCCSSE
T ss_pred ceEEEEeCCHHHHHHHHHh--CCCCEEEEcCCCCCCCCHHHHHHHHHhcC---CCCEEEEeCCH--HHHHHHHhCCCcEE
Confidence 6788 99999999999999 8999999999999 899999999999875 89999999974 45677899999999
Q ss_pred EeCCCCHHHHHHHHHHHHHhccC
Q 044790 79 LVKPIRKNELQNLWQHVWRKCHS 101 (162)
Q Consensus 79 l~KP~~~~~L~~~i~~~l~~~~~ 101 (162)
|.||++.++|..+|+.++.+...
T Consensus 258 l~KP~~~~~L~~~i~~~l~~~~~ 280 (286)
T 3n0r_A 258 ITKPFQPETVKAAIGQALFFHPR 280 (286)
T ss_dssp EESSCCHHHHHHHHHHHHHHSCC
T ss_pred EeCCCCHHHHHHHHHHHHHhCCc
Confidence 99999999999999999988643
No 28
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=99.81 E-value=1.2e-19 Score=124.92 Aligned_cols=99 Identities=17% Similarity=0.238 Sum_probs=91.2
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCC--CCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceE
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPC--LSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYF 78 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~--~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~ 78 (162)
|+|..+.++.+|++.+.+ .+||+||+|+.||+ ++|++++++||+.. +.+|||++|+..+.+...++++.|+++|
T Consensus 31 ~~v~~~~~~~~a~~~l~~--~~~dlvi~D~~l~~~~~~g~~~~~~l~~~~--~~~~ii~~s~~~~~~~~~~~~~~ga~~~ 106 (136)
T 3kto_A 31 VTIQCFASAESFMRQQIS--DDAIGMIIEAHLEDKKDSGIELLETLVKRG--FHLPTIVMASSSDIPTAVRAMRASAADF 106 (136)
T ss_dssp SEEEEESSHHHHTTSCCC--TTEEEEEEETTGGGBTTHHHHHHHHHHHTT--CCCCEEEEESSCCHHHHHHHHHTTCSEE
T ss_pred cEEEEeCCHHHHHHHHhc--cCCCEEEEeCcCCCCCccHHHHHHHHHhCC--CCCCEEEEEcCCCHHHHHHHHHcChHHh
Confidence 678899999999999988 88999999999999 99999999999876 8999999999999999999999999999
Q ss_pred EeCCCCHHHHHHHHHHHHHhccCCC
Q 044790 79 LVKPIRKNELQNLWQHVWRKCHSSS 103 (162)
Q Consensus 79 l~KP~~~~~L~~~i~~~l~~~~~~~ 103 (162)
|.||++.++|..+|++++.+.....
T Consensus 107 l~KP~~~~~l~~~i~~~~~~~~~~~ 131 (136)
T 3kto_A 107 IEKPFIEHVLVHDVQQIINGAKEGH 131 (136)
T ss_dssp EESSBCHHHHHHHHHHHHHHHC---
T ss_pred eeCCCCHHHHHHHHHHHHhccCCCC
Confidence 9999999999999999998876543
No 29
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=99.81 E-value=1.7e-19 Score=124.31 Aligned_cols=102 Identities=14% Similarity=0.199 Sum_probs=89.8
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHH-HHHHcCCceEE
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVF-KCLSKGAVYFL 79 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~-~a~~~Ga~~~l 79 (162)
|+|..+.++.+|++.+.. .+||+||+|+.||+++|++++++||+....+.+|||++|+........ .++..|+++||
T Consensus 31 ~~v~~~~~~~~a~~~l~~--~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~~g~~~~l 108 (140)
T 3grc_A 31 FDSDMVHSAAQALEQVAR--RPYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLAIVVVSANAREGELEFNSQPLAVSTWL 108 (140)
T ss_dssp CEEEEECSHHHHHHHHHH--SCCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCEEEEECTTHHHHHHHHCCTTTCCCEEE
T ss_pred CeEEEECCHHHHHHHHHh--CCCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCCEEEEecCCChHHHHHHhhhcCCCEEE
Confidence 578899999999999998 899999999999999999999999984444899999999987777766 88999999999
Q ss_pred eCCCCHHHHHHHHHHHHHhccCCCC
Q 044790 80 VKPIRKNELQNLWQHVWRKCHSSSG 104 (162)
Q Consensus 80 ~KP~~~~~L~~~i~~~l~~~~~~~~ 104 (162)
.||++.++|..+|+.++++......
T Consensus 109 ~kP~~~~~l~~~i~~~l~~~~~~~~ 133 (140)
T 3grc_A 109 EKPIDENLLILSLHRAIDNMAEGKE 133 (140)
T ss_dssp CSSCCHHHHHHHHHHHHHHHC----
T ss_pred eCCCCHHHHHHHHHHHHHhcCCCCc
Confidence 9999999999999999998765443
No 30
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=99.80 E-value=7.8e-19 Score=121.43 Aligned_cols=101 Identities=23% Similarity=0.426 Sum_probs=91.6
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|+|..+.++.+|++.+......||+||+|+.||+++|+++++.||... +.+|||++|+..+.+...+++..|+++||.
T Consensus 28 ~~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~--~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~ 105 (143)
T 3jte_A 28 NEVLTASSSTEGLRIFTENCNSIDVVITDMKMPKLSGMDILREIKKIT--PHMAVIILTGHGDLDNAILAMKEGAFEYLR 105 (143)
T ss_dssp CEEEEESSHHHHHHHHHHTTTTCCEEEEESCCSSSCHHHHHHHHHHHC--TTCEEEEEECTTCHHHHHHHHHTTCSEEEE
T ss_pred ceEEEeCCHHHHHHHHHhCCCCCCEEEEeCCCCCCcHHHHHHHHHHhC--CCCeEEEEECCCCHHHHHHHHHhCcceeEe
Confidence 578899999999999983116899999999999999999999999875 899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhccCCC
Q 044790 81 KPIRKNELQNLWQHVWRKCHSSS 103 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l~~~~~~~ 103 (162)
||++.++|..+|+.++++.....
T Consensus 106 kp~~~~~l~~~l~~~~~~~~~~~ 128 (143)
T 3jte_A 106 KPVTAQDLSIAINNAINRKKLLM 128 (143)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998765443
No 31
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=99.80 E-value=2.9e-19 Score=122.73 Aligned_cols=99 Identities=22% Similarity=0.338 Sum_probs=92.0
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|.|..+.++.+|++.+.. ..||+||+|+.||+++|+++++.||+.. +.+|||+++...+.+...+++..|+++||.
T Consensus 32 ~~v~~~~~~~~a~~~l~~--~~~dlvi~d~~l~~~~g~~~~~~l~~~~--~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~ 107 (137)
T 3hdg_A 32 PEVWSAGDGEEGERLFGL--HAPDVIITDIRMPKLGGLEMLDRIKAGG--AKPYVIVISAFSEMKYFIKAIELGVHLFLP 107 (137)
T ss_dssp SCEEEESSHHHHHHHHHH--HCCSEEEECSSCSSSCHHHHHHHHHHTT--CCCEEEECCCCCCHHHHHHHHHHCCSEECC
T ss_pred cEEEEECCHHHHHHHHhc--cCCCEEEEeCCCCCCCHHHHHHHHHhcC--CCCcEEEEecCcChHHHHHHHhCCcceeEc
Confidence 468899999999999998 7899999999999999999999999876 899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhccCCC
Q 044790 81 KPIRKNELQNLWQHVWRKCHSSS 103 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l~~~~~~~ 103 (162)
||++.++|..+|++++++.....
T Consensus 108 kP~~~~~l~~~i~~~~~~~~~~~ 130 (137)
T 3hdg_A 108 KPIEPGRLMETLEDFRHIKLAKE 130 (137)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999998865433
No 32
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=99.80 E-value=4.7e-19 Score=120.39 Aligned_cols=95 Identities=24% Similarity=0.438 Sum_probs=87.6
Q ss_pred EEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeC
Q 044790 2 AVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVK 81 (162)
Q Consensus 2 ~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~K 81 (162)
.|..+.++.++++.+.. ..||+||+|+.||+++|++++++||+....+.+|||++|+..+.....++++.|+++||.|
T Consensus 33 ~v~~~~~~~~a~~~~~~--~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~K 110 (129)
T 1p6q_A 33 QITAAGDGEQGMKIMAQ--NPHHLVISDFNMPKMDGLGLLQAVRANPATKKAAFIILTAQGDRALVQKAAALGANNVLAK 110 (129)
T ss_dssp CEECCSSHHHHHHHHHT--SCCSEEEECSSSCSSCHHHHHHHHTTCTTSTTCEEEECCSCCCHHHHHHHHHHTCSCEECC
T ss_pred EEEecCCHHHHHHHHHc--CCCCEEEEeCCCCCCCHHHHHHHHhcCccccCCCEEEEeCCCCHHHHHHHHHcCCCEEEEC
Confidence 57788999999999998 7899999999999999999999999864457899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHh
Q 044790 82 PIRKNELQNLWQHVWRK 98 (162)
Q Consensus 82 P~~~~~L~~~i~~~l~~ 98 (162)
|++.++|..+|+.++++
T Consensus 111 P~~~~~l~~~i~~~~~~ 127 (129)
T 1p6q_A 111 PFTIEKMKAAIEAVFGA 127 (129)
T ss_dssp CSSHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999998764
No 33
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=99.80 E-value=1e-18 Score=121.32 Aligned_cols=100 Identities=23% Similarity=0.367 Sum_probs=91.0
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|+|..+.++.++++.+.. ..||+||+|+.||+++|+++++.|++....+.+|||+++..........++..|+++||.
T Consensus 33 ~~v~~~~~~~~a~~~l~~--~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~ 110 (147)
T 2zay_A 33 FDIIQCGNAIEAVPVAVK--THPHLIITEANMPKISGMDLFNSLKKNPQTASIPVIALSGRATAKEEAQLLDMGFIDFIA 110 (147)
T ss_dssp EEEEEESSHHHHHHHHHH--HCCSEEEEESCCSSSCHHHHHHHHHTSTTTTTSCEEEEESSCCHHHHHHHHHHTCSEEEE
T ss_pred CeEEEeCCHHHHHHHHHc--CCCCEEEEcCCCCCCCHHHHHHHHHcCcccCCCCEEEEeCCCCHHHHHHHHhCCCCEEEe
Confidence 578899999999999998 789999999999999999999999984444899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhccCC
Q 044790 81 KPIRKNELQNLWQHVWRKCHSS 102 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l~~~~~~ 102 (162)
||++.++|..+|+.++++....
T Consensus 111 kp~~~~~L~~~i~~~~~~~~~~ 132 (147)
T 2zay_A 111 KPVNAIRLSARIKRVLKLLYED 132 (147)
T ss_dssp SSCCHHHHHHHHHHHHHHHC--
T ss_pred CCCCHHHHHHHHHHHHHHHHhc
Confidence 9999999999999998876543
No 34
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=99.80 E-value=8.9e-19 Score=122.45 Aligned_cols=97 Identities=20% Similarity=0.352 Sum_probs=90.5
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|.|..+.++.+|++.+.. ..||+||+|+.||+++|+++++.||+.. +.+|||++|+..+.+...++++.|+++||.
T Consensus 47 ~~v~~~~~~~~al~~l~~--~~~dlii~D~~l~~~~g~~~~~~l~~~~--~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~ 122 (150)
T 4e7p_A 47 ESVLQAKNGQEAIQLLEK--ESVDIAILDVEMPVKTGLEVLEWIRSEK--LETKVVVVTTFKRAGYFERAVKAGVDAYVL 122 (150)
T ss_dssp EEEEEESSHHHHHHHHTT--SCCSEEEECSSCSSSCHHHHHHHHHHTT--CSCEEEEEESCCCHHHHHHHHHTTCSEEEE
T ss_pred EEEEEECCHHHHHHHhhc--cCCCEEEEeCCCCCCcHHHHHHHHHHhC--CCCeEEEEeCCCCHHHHHHHHHCCCcEEEe
Confidence 357899999999999998 8899999999999999999999999865 899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhccC
Q 044790 81 KPIRKNELQNLWQHVWRKCHS 101 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l~~~~~ 101 (162)
||++.++|..+|++++++...
T Consensus 123 Kp~~~~~l~~~i~~~~~~~~~ 143 (150)
T 4e7p_A 123 KERSIADLMQTLHTVLEGRKE 143 (150)
T ss_dssp TTSCHHHHHHHHHHHHTTCCE
T ss_pred cCCCHHHHHHHHHHHHcCCEE
Confidence 999999999999999887543
No 35
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=99.80 E-value=9.2e-19 Score=120.70 Aligned_cols=97 Identities=21% Similarity=0.310 Sum_probs=88.9
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|+|..+.++.++++.+.. ..||+||+|+.||+++|+++++.|+... .+|||++++.........+++.|+++||.
T Consensus 29 ~~v~~~~~~~~al~~~~~--~~~dlvllD~~l~~~~g~~l~~~l~~~~---~~~ii~ls~~~~~~~~~~~~~~ga~~~l~ 103 (136)
T 2qzj_A 29 ISIDLAYNCEEAIGKIFS--NKYDLIFLEIILSDGDGWTLCKKIRNVT---TCPIVYMTYINEDQSILNALNSGGDDYLI 103 (136)
T ss_dssp CEEEEESSHHHHHHHHHH--CCCSEEEEESEETTEEHHHHHHHHHTTC---CCCEEEEESCCCHHHHHHHHHTTCCEEEE
T ss_pred CEEEEECCHHHHHHHHHh--cCCCEEEEeCCCCCCCHHHHHHHHccCC---CCCEEEEEcCCCHHHHHHHHHcCCcEEEE
Confidence 578899999999999998 8899999999999999999999999753 78999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhccCC
Q 044790 81 KPIRKNELQNLWQHVWRKCHSS 102 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l~~~~~~ 102 (162)
||++.++|..+|+.++++....
T Consensus 104 KP~~~~~L~~~l~~~~~~~~~~ 125 (136)
T 2qzj_A 104 KPLNLEILYAKVKAILRRMNSY 125 (136)
T ss_dssp SSCCHHHHHHHHHHHHHHHHC-
T ss_pred CCCCHHHHHHHHHHHHHHhhhc
Confidence 9999999999999998875433
No 36
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=99.80 E-value=6.9e-19 Score=118.11 Aligned_cols=92 Identities=24% Similarity=0.393 Sum_probs=85.0
Q ss_pred CE-EEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEE
Q 044790 1 MA-VIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFL 79 (162)
Q Consensus 1 ~~-v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l 79 (162)
|+ +..+.++.++++.+.. ..||+||+|+.||+++|++++++|++.. +.+|||++|+........++++.|+++||
T Consensus 27 ~~vv~~~~~~~~a~~~~~~--~~~dlil~D~~l~~~~g~~~~~~l~~~~--~~~~ii~~s~~~~~~~~~~~~~~g~~~~l 102 (120)
T 1tmy_A 27 YEVAGEATNGREAVEKYKE--LKPDIVTMDITMPEMNGIDAIKEIMKID--PNAKIIVCSAMGQQAMVIEAIKAGAKDFI 102 (120)
T ss_dssp CEEEEEESSHHHHHHHHHH--HCCSEEEEECSCGGGCHHHHHHHHHHHC--TTCCEEEEECTTCHHHHHHHHHTTCCEEE
T ss_pred cEEEEEECCHHHHHHHHHh--cCCCEEEEeCCCCCCcHHHHHHHHHhhC--CCCeEEEEeCCCCHHHHHHHHHhCcceeE
Confidence 45 4589999999999998 7899999999999999999999999865 78999999999999999999999999999
Q ss_pred eCCCCHHHHHHHHHHHH
Q 044790 80 VKPIRKNELQNLWQHVW 96 (162)
Q Consensus 80 ~KP~~~~~L~~~i~~~l 96 (162)
.||++.++|..+|++++
T Consensus 103 ~KP~~~~~l~~~i~~~~ 119 (120)
T 1tmy_A 103 VKPFQPSRVVEALNKVS 119 (120)
T ss_dssp ESSCCHHHHHHHHHHHC
T ss_pred eCCCCHHHHHHHHHHHh
Confidence 99999999999998764
No 37
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=99.80 E-value=1.8e-18 Score=116.49 Aligned_cols=94 Identities=21% Similarity=0.380 Sum_probs=87.7
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|+|..+.++.++++.+.. ..||+||+|+.||+++|+++++.|++. +.+|+|++++.........+++.|+++||.
T Consensus 28 ~~v~~~~~~~~a~~~~~~--~~~dlvi~D~~l~~~~g~~~~~~l~~~---~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~ 102 (123)
T 1xhf_A 28 YDVFEATDGAEMHQILSE--YDINLVIMDINLPGKNGLLLARELREQ---ANVALMFLTGRDNEVDKILGLEIGADDYIT 102 (123)
T ss_dssp CEEEEESSHHHHHHHHHH--SCCSEEEECSSCSSSCHHHHHHHHHHH---CCCEEEEEESCCSHHHHHHHHHHTCSEEEE
T ss_pred cEEEEeCCHHHHHHHHhc--CCCCEEEEcCCCCCCCHHHHHHHHHhC---CCCcEEEEECCCChHHHHHHHhcCcceEEe
Confidence 578899999999999998 889999999999999999999999975 579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhc
Q 044790 81 KPIRKNELQNLWQHVWRKC 99 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l~~~ 99 (162)
||++.++|..+|+.++++.
T Consensus 103 KP~~~~~l~~~i~~~~~~~ 121 (123)
T 1xhf_A 103 KPFNPRELTIRARNLLSRT 121 (123)
T ss_dssp SSCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHh
Confidence 9999999999999988764
No 38
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=99.80 E-value=1.4e-18 Score=116.35 Aligned_cols=93 Identities=26% Similarity=0.458 Sum_probs=86.6
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|+|..+.++.++++.+.. ..||+||+|+.||+++|++++++||+. +.+|||++++.........+++.|+++||.
T Consensus 26 ~~v~~~~~~~~a~~~~~~--~~~dlvl~D~~l~~~~g~~~~~~l~~~---~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~ 100 (120)
T 2a9o_A 26 YEVVTAFNGREALEQFEA--EQPDIIILDLMLPEIDGLEVAKTIRKT---SSVPILMLSAKDSEFDKVIGLELGADDYVT 100 (120)
T ss_dssp CEEEEESSHHHHHHHHHH--HCCSEEEECSSCSSSCHHHHHHHHHHH---CCCCEEEEESCCSHHHHHHHHHHTCSEEEE
T ss_pred cEEEEecCHHHHHHHHHh--CCCCEEEEeccCCCCCHHHHHHHHHhC---CCCCEEEEecCCchHHHHHHHhCCHhheEe
Confidence 578899999999999988 789999999999999999999999974 689999999999999899999999999999
Q ss_pred CCCCHHHHHHHHHHHHHh
Q 044790 81 KPIRKNELQNLWQHVWRK 98 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l~~ 98 (162)
||++.++|..+|+.++++
T Consensus 101 Kp~~~~~l~~~i~~~~~~ 118 (120)
T 2a9o_A 101 KPFSNRELQARVKALLRR 118 (120)
T ss_dssp SSCCHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHcc
Confidence 999999999999988765
No 39
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=99.80 E-value=2.5e-18 Score=118.41 Aligned_cols=100 Identities=20% Similarity=0.255 Sum_probs=90.9
Q ss_pred CE-EEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEE
Q 044790 1 MA-VIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFL 79 (162)
Q Consensus 1 ~~-v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l 79 (162)
|+ |..+.++.++++.+.. ..||+||+|+.||+++|++++++|++....+.+|||++++.........++..|+++||
T Consensus 34 ~~~v~~~~~~~~a~~~l~~--~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l 111 (143)
T 3cnb_A 34 YAKIKIAYNPFDAGDLLHT--VKPDVVMLDLMMVGMDGFSICHRIKSTPATANIIVIAMTGALTDDNVSRIVALGAETCF 111 (143)
T ss_dssp TCEEEEECSHHHHHHHHHH--TCCSEEEEETTCTTSCHHHHHHHHHTSTTTTTSEEEEEESSCCHHHHHHHHHTTCSEEE
T ss_pred ccEEEEECCHHHHHHHHHh--cCCCEEEEecccCCCcHHHHHHHHHhCccccCCcEEEEeCCCCHHHHHHHHhcCCcEEE
Confidence 45 8899999999999998 88999999999999999999999998544489999999999999999999999999999
Q ss_pred eCCCCHHHHHHHHHHHHHhccCC
Q 044790 80 VKPIRKNELQNLWQHVWRKCHSS 102 (162)
Q Consensus 80 ~KP~~~~~L~~~i~~~l~~~~~~ 102 (162)
.||++.++|..+|+.++++....
T Consensus 112 ~kP~~~~~l~~~i~~~~~~~~~~ 134 (143)
T 3cnb_A 112 GKPLNFTLLEKTIKQLVEQKKAT 134 (143)
T ss_dssp ESSCCHHHHHHHHHHHHHTTC--
T ss_pred eCCCCHHHHHHHHHHHHHhhccc
Confidence 99999999999999999876543
No 40
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=99.80 E-value=6.4e-19 Score=119.98 Aligned_cols=96 Identities=25% Similarity=0.432 Sum_probs=81.3
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|.|..+.++.+|++.+.. .+||+||+|+.||+++|+++++.||+.. +.+|||++|+..+.....++++.|+++||.
T Consensus 32 ~~v~~~~~~~~a~~~l~~--~~~dlvi~d~~l~~~~g~~~~~~l~~~~--~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~ 107 (130)
T 3eod_A 32 ATTVLAADGVDALELLGG--FTPDLMICDIAMPRMNGLKLLEHIRNRG--DQTPVLVISATENMADIAKALRLGVEDVLL 107 (130)
T ss_dssp CEEEEESCHHHHHHHHTT--CCCSEEEECCC-----CHHHHHHHHHTT--CCCCEEEEECCCCHHHHHHHHHHCCSEEEE
T ss_pred ceEEEeCCHHHHHHHHhc--CCCCEEEEecCCCCCCHHHHHHHHHhcC--CCCCEEEEEcCCCHHHHHHHHHcCCCEEEe
Confidence 578899999999999988 8899999999999999999999999865 799999999999999999999999999999
Q ss_pred CCC-CHHHHHHHHHHHHHhcc
Q 044790 81 KPI-RKNELQNLWQHVWRKCH 100 (162)
Q Consensus 81 KP~-~~~~L~~~i~~~l~~~~ 100 (162)
||+ +.++|...|+.++.+..
T Consensus 108 KP~~~~~~l~~~i~~~l~~~~ 128 (130)
T 3eod_A 108 KPVKDLNRLREMVFACLYPSM 128 (130)
T ss_dssp SCC---CHHHHHHHHHHC---
T ss_pred CCCCcHHHHHHHHHHHhchhh
Confidence 999 99999999999887653
No 41
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=99.79 E-value=1.9e-18 Score=118.51 Aligned_cols=99 Identities=21% Similarity=0.347 Sum_probs=87.9
Q ss_pred CEEEEEcCHHHHHHHHHhhCCC-ccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEE
Q 044790 1 MAVIAVENGLQAWKILEDLMDQ-IDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFL 79 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~-~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l 79 (162)
|+|..+.++.+++..+.. .. ||+||+|+.||+++|+++++.||+.. .+.+|||++|+..+.+...+++..|+++||
T Consensus 32 ~~v~~~~~~~~a~~~~~~--~~~~dlvi~D~~l~~~~g~~~~~~l~~~~-~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l 108 (136)
T 3hdv_A 32 IDAVGADGAEEARLYLHY--QKRIGLMITDLRMQPESGLDLIRTIRASE-RAALSIIVVSGDTDVEEAVDVMHLGVVDFL 108 (136)
T ss_dssp CCEEEESSHHHHHHHHHH--CTTEEEEEECSCCSSSCHHHHHHHHHTST-TTTCEEEEEESSCCHHHHHHHHHTTCSEEE
T ss_pred ceEEEeCCHHHHHHHHHh--CCCCcEEEEeccCCCCCHHHHHHHHHhcC-CCCCCEEEEeCCCChHHHHHHHhCCcceEE
Confidence 578899999999999988 66 99999999999999999999999863 378999999999999999999999999999
Q ss_pred eCCCCHHHHHHHHHHHHHhccCC
Q 044790 80 VKPIRKNELQNLWQHVWRKCHSS 102 (162)
Q Consensus 80 ~KP~~~~~L~~~i~~~l~~~~~~ 102 (162)
.||++.++|..+|++++.+....
T Consensus 109 ~KP~~~~~l~~~i~~~~~~~~~~ 131 (136)
T 3hdv_A 109 LKPVDLGKLLELVNKELKIGEGH 131 (136)
T ss_dssp ESSCCHHHHHHHHHHHHC-----
T ss_pred eCCCCHHHHHHHHHHHhcCchhh
Confidence 99999999999999998876543
No 42
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=99.79 E-value=3.8e-19 Score=121.59 Aligned_cols=99 Identities=18% Similarity=0.233 Sum_probs=88.3
Q ss_pred CEEE-EEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEE
Q 044790 1 MAVI-AVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFL 79 (162)
Q Consensus 1 ~~v~-~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l 79 (162)
|++. .+.++.+|++.+.+ ..||+||+|+.||+++|++++++||+.. +.+|||++|+..+.....++++.|+++||
T Consensus 26 ~~v~~~~~~~~~a~~~~~~--~~~dlii~d~~l~~~~g~~~~~~l~~~~--~~~~ii~~s~~~~~~~~~~~~~~g~~~~l 101 (134)
T 3f6c_A 26 IEILAELTEGGSAVQRVET--LKPDIVIIDVDIPGVNGIQVLETLRKRQ--YSGIIIIVSAKNDHFYGKHCADAGANGFV 101 (134)
T ss_dssp EEEEEEESSSTTHHHHHHH--HCCSEEEEETTCSSSCHHHHHHHHHHTT--CCSEEEEEECC---CTHHHHHHTTCSEEE
T ss_pred cEEEEEcCCHHHHHHHHHh--cCCCEEEEecCCCCCChHHHHHHHHhcC--CCCeEEEEeCCCChHHHHHHHHhCCCEEE
Confidence 4565 89999999999998 7899999999999999999999999876 89999999999998899999999999999
Q ss_pred eCCCCHHHHHHHHHHHHHhccCCC
Q 044790 80 VKPIRKNELQNLWQHVWRKCHSSS 103 (162)
Q Consensus 80 ~KP~~~~~L~~~i~~~l~~~~~~~ 103 (162)
.||++.++|..+|+.++++.....
T Consensus 102 ~kp~~~~~l~~~i~~~~~~~~~~~ 125 (134)
T 3f6c_A 102 SKKEGMNNIIAAIEAAKNGYCYFP 125 (134)
T ss_dssp EGGGCTHHHHHHHHHHHTTCCBCC
T ss_pred eCCCCHHHHHHHHHHHHCCCEEeC
Confidence 999999999999999998876543
No 43
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=99.79 E-value=1.2e-18 Score=120.15 Aligned_cols=98 Identities=21% Similarity=0.336 Sum_probs=85.8
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|.|..+.++.++++.+.. ..||+||+|+.||+++|+++++.|++....+.+|||++|+.........++..|+++||.
T Consensus 28 ~~v~~~~~~~~al~~l~~--~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~ls~~~~~~~~~~~~~~~~~~~l~ 105 (138)
T 3c3m_A 28 YRPITAFSGEECLEALNA--TPPDLVLLDIMMEPMDGWETLERIKTDPATRDIPVLMLTAKPLTPEEANEYGSYIEDYIL 105 (138)
T ss_dssp CEEEEESSHHHHHHHHHH--SCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEEEESSCCCHHHHHHTTTTCSEEEE
T ss_pred ceEEEeCCHHHHHHHHhc--cCCCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCEEEEECCCChHHHHHHhhcCHhheEe
Confidence 578899999999999998 889999999999999999999999986544689999999987666666666778899999
Q ss_pred CCCCHHHHHHHHHHHHHhcc
Q 044790 81 KPIRKNELQNLWQHVWRKCH 100 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l~~~~ 100 (162)
||++.++|..+|+.++.+..
T Consensus 106 KP~~~~~L~~~i~~~~~~~~ 125 (138)
T 3c3m_A 106 KPTTHHQLYEAIEHVLARRH 125 (138)
T ss_dssp CCCHHHHHHHHHHHHHSCC-
T ss_pred CCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999887544
No 44
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=99.79 E-value=1.4e-18 Score=119.07 Aligned_cols=96 Identities=25% Similarity=0.431 Sum_probs=88.3
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|+|..+.++.++++.+.. ..||+||+|+.||+++|+++++.|++.. +.+|||++|+.........+++.|+++||.
T Consensus 28 ~~v~~~~~~~~a~~~~~~--~~~dlvl~D~~l~~~~g~~~~~~l~~~~--~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~ 103 (136)
T 1mvo_A 28 YDVITASDGEEALKKAET--EKPDLIVLDVMLPKLDGIEVCKQLRQQK--LMFPILMLTAKDEEFDKVLGLELGADDYMT 103 (136)
T ss_dssp CEEEEESSHHHHHHHHHH--HCCSEEEEESSCSSSCHHHHHHHHHHTT--CCCCEEEEECTTCCCCHHHHHHTTCCEEEE
T ss_pred cEEEEecCHHHHHHHHhh--cCCCEEEEecCCCCCCHHHHHHHHHcCC--CCCCEEEEECCCCHHHHHHHHhCCCCEEEE
Confidence 578899999999999988 7899999999999999999999999865 789999999998888888999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcc
Q 044790 81 KPIRKNELQNLWQHVWRKCH 100 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l~~~~ 100 (162)
||++.++|..+|+.++++..
T Consensus 104 KP~~~~~l~~~i~~~~~~~~ 123 (136)
T 1mvo_A 104 KPFSPREVNARVKAILRRSE 123 (136)
T ss_dssp SSCCHHHHHHHHHHHHHTC-
T ss_pred CCCCHHHHHHHHHHHHHhhc
Confidence 99999999999999887643
No 45
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=99.79 E-value=9.8e-19 Score=119.20 Aligned_cols=96 Identities=28% Similarity=0.510 Sum_probs=86.2
Q ss_pred EEE-EEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 2 AVI-AVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 2 ~v~-~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
++. .+.++.++++.+.. ..||+||+|+.||+++|++++++|++.. .+.+|||++|+..+.....++++.|+++||.
T Consensus 29 ~~~~~~~~~~~a~~~~~~--~~~dlvllD~~l~~~~g~~~~~~l~~~~-~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~ 105 (130)
T 1dz3_A 29 EVIGTAYNGQDCLQMLEE--KRPDILLLDIIMPHLDGLAVLERIRAGF-EHQPNVIMLTAFGQEDVTKKAVELGASYFIL 105 (130)
T ss_dssp EEEEEESSHHHHHHHHHH--HCCSEEEEESCCSSSCHHHHHHHHHHHC-SSCCEEEEEEETTCHHHHHHHHHTTCEEEEE
T ss_pred eEEEEeCCHHHHHHHHhc--CCCCEEEEecCCCCCCHHHHHHHHHhcC-CCCCcEEEEecCCCHHHHHHHHHcCCCEEEe
Confidence 444 78999999999988 7899999999999999999999999741 2678999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcc
Q 044790 81 KPIRKNELQNLWQHVWRKCH 100 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l~~~~ 100 (162)
||++.++|..+|+.++++..
T Consensus 106 KP~~~~~l~~~i~~~~~~~~ 125 (130)
T 1dz3_A 106 KPFDMENLAHHIRQVYGKTT 125 (130)
T ss_dssp CSSCCTTHHHHHHHHHHCC-
T ss_pred CCCCHHHHHHHHHHHhcCCC
Confidence 99999999999999887653
No 46
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=99.79 E-value=5.3e-19 Score=119.95 Aligned_cols=97 Identities=20% Similarity=0.244 Sum_probs=85.4
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|+|..+.++.+|++.+.+ ..||+||+|+.||+++|+++++.||+....+.+|||++|+...... ..++..|+++||.
T Consensus 28 ~~v~~~~~~~~a~~~l~~--~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~-~~~~~~g~~~~l~ 104 (127)
T 3i42_A 28 FQADYVMSGTDALHAMST--RGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKFVAVSGFAKNDL-GKEACELFDFYLE 104 (127)
T ss_dssp EEEEEESSHHHHHHHHHH--SCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEEEEECC-CTTC-CHHHHHHCSEEEE
T ss_pred CCEEEECCHHHHHHHHHh--cCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCEEEEECCcchhH-HHHHHHhhHHhee
Confidence 478899999999999998 8899999999999999999999999874458999999999988887 8899999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcc
Q 044790 81 KPIRKNELQNLWQHVWRKCH 100 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l~~~~ 100 (162)
||++.++|..+++...+...
T Consensus 105 KP~~~~~L~~~i~~~~~~~~ 124 (127)
T 3i42_A 105 KPIDIASLEPILQSIEGHHH 124 (127)
T ss_dssp SSCCHHHHHHHHHHHC----
T ss_pred CCCCHHHHHHHHHHhhccCC
Confidence 99999999999998766543
No 47
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=99.79 E-value=3.7e-19 Score=122.77 Aligned_cols=102 Identities=26% Similarity=0.432 Sum_probs=89.1
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCC-CCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEE
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMP-CLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFL 79 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp-~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l 79 (162)
|+|..+.++.+|++.+.+. ..||+||+|+.|| +++|+++++.||+....+.+|||++|+..+.+...++++.|+++||
T Consensus 30 ~~v~~~~~~~~a~~~l~~~-~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l 108 (140)
T 3lua_A 30 YDFIEVENLKKFYSIFKDL-DSITLIIMDIAFPVEKEGLEVLSAIRNNSRTANTPVIIATKSDNPGYRHAALKFKVSDYI 108 (140)
T ss_dssp CEEEEECSHHHHHTTTTTC-CCCSEEEECSCSSSHHHHHHHHHHHHHSGGGTTCCEEEEESCCCHHHHHHHHHSCCSEEE
T ss_pred ccEEEECCHHHHHHHHhcC-CCCcEEEEeCCCCCCCcHHHHHHHHHhCcccCCCCEEEEeCCCCHHHHHHHHHcCCCEEE
Confidence 6788999999999998752 4799999999999 9999999999998333489999999999999999999999999999
Q ss_pred eCCCCHHHHHHHHHHHHHhccCCC
Q 044790 80 VKPIRKNELQNLWQHVWRKCHSSS 103 (162)
Q Consensus 80 ~KP~~~~~L~~~i~~~l~~~~~~~ 103 (162)
.||++.++|..+|+.++++.....
T Consensus 109 ~KP~~~~~l~~~i~~~~~~~~~~~ 132 (140)
T 3lua_A 109 LKPYPTKRLENSVRSVLKICQRFR 132 (140)
T ss_dssp ESSCCTTHHHHHHHHHHCC-----
T ss_pred ECCCCHHHHHHHHHHHHHhccccC
Confidence 999999999999999988765544
No 48
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=99.79 E-value=2.8e-19 Score=123.38 Aligned_cols=99 Identities=24% Similarity=0.320 Sum_probs=82.4
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|.|..+.++.+|++.+.+ ..||+||+|+.||+++|+++++.||+....+.+|||++++..+.+...++++.|+++||.
T Consensus 27 ~~v~~~~~~~~a~~~~~~--~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~ 104 (140)
T 3n53_A 27 YLVIESKNEKEALEQIDH--HHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLT 104 (140)
T ss_dssp SEEEEESSHHHHHHHHHH--HCCSEEEEETTC------CHHHHHHTSTTCTTCCEEEEECC----CTTTTTTCCCSEEEE
T ss_pred ceEEEeCCHHHHHHHHhc--CCCCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCEEEEecCCCHHHHHHHHhcCCCeeee
Confidence 678899999999999998 789999999999999999999999987655789999999998888888999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhccC
Q 044790 81 KPIRKNELQNLWQHVWRKCHS 101 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l~~~~~ 101 (162)
||++.++|..+|+.++++...
T Consensus 105 KP~~~~~l~~~i~~~~~~~~~ 125 (140)
T 3n53_A 105 KPFNRNDLLSRIEIHLRTQNY 125 (140)
T ss_dssp SSCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhhHHH
Confidence 999999999999999987654
No 49
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=99.79 E-value=2.9e-18 Score=126.60 Aligned_cols=96 Identities=22% Similarity=0.287 Sum_probs=89.2
Q ss_pred EE-EEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 2 AV-IAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 2 ~v-~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
.+ ..+.++.+|++.+.. ..||+||+|+.||+++|++++++||+.. +.+|||++|+..+.+....+++.|+++||.
T Consensus 32 ~vv~~~~~~~~al~~~~~--~~~dlvllD~~lp~~~g~~~~~~lr~~~--~~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~ 107 (215)
T 1a04_A 32 TVVGEASNGEQGIELAES--LDPDLILLDLNMPGMNGLETLDKLREKS--LSGRIVVFSVSNHEEDVVTALKRGADGYLL 107 (215)
T ss_dssp EEEEEESSHHHHHHHHHH--HCCSEEEEETTSTTSCHHHHHHHHHHSC--CCSEEEEEECCCCHHHHHHHHHTTCSEEEE
T ss_pred EEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCCCcHHHHHHHHHHhC--CCCcEEEEECCCCHHHHHHHHHcCCcEEEe
Confidence 45 689999999999998 7899999999999999999999999865 789999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhccC
Q 044790 81 KPIRKNELQNLWQHVWRKCHS 101 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l~~~~~ 101 (162)
||++.++|..+|+.++++...
T Consensus 108 Kp~~~~~L~~~i~~~~~~~~~ 128 (215)
T 1a04_A 108 KDMEPEDLLKALHQAAAGEMV 128 (215)
T ss_dssp TTCCHHHHHHHHHHHHHSCCC
T ss_pred CCCCHHHHHHHHHHHHcCCee
Confidence 999999999999999987543
No 50
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.78 E-value=7.1e-19 Score=141.04 Aligned_cols=97 Identities=21% Similarity=0.295 Sum_probs=91.5
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|.|..+.++.+|++.+.. ..||+||+|+.||+++|++++++||+.. +.+|||++|++.+.+...++++.||++||.
T Consensus 25 ~~v~~a~~~~eal~~l~~--~~~DlvllDi~mP~~dG~ell~~lr~~~--~~~pvI~lT~~~~~~~~~~a~~~Ga~~yl~ 100 (368)
T 3dzd_A 25 YHPDTAKTLREAEKKIKE--LFFPVIVLDVWMPDGDGVNFIDFIKENS--PDSVVIVITGHGSVDTAVKAIKKGAYEFLE 100 (368)
T ss_dssp CEEEEESSHHHHHHHHHH--BCCSEEEEESEETTEETTTHHHHHHHHC--TTCEEEEEECSSCCHHHHHHHHHTCCEEEE
T ss_pred CEEEEECCHHHHHHHHHh--CCCCEEEEeCCCCCCCHHHHHHHHHhhC--CCCeEEEEeCCCCHHHHHHHHhcCcceEEe
Confidence 678899999999999998 8999999999999999999999999876 899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhccC
Q 044790 81 KPIRKNELQNLWQHVWRKCHS 101 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l~~~~~ 101 (162)
||++.++|...|++++.....
T Consensus 101 KP~~~~~L~~~i~~~l~~~~~ 121 (368)
T 3dzd_A 101 KPFSVERFLLTIKHAFEEYSK 121 (368)
T ss_dssp SSCCHHHHHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHHHHHHhhh
Confidence 999999999999999987643
No 51
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=99.78 E-value=2.7e-19 Score=121.12 Aligned_cols=97 Identities=24% Similarity=0.345 Sum_probs=88.9
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|+|..+.++.++++.+.. ..||+||+|+.||+++|++++++||+....+.+|||++|+..+.+...++++.|+++||.
T Consensus 27 ~~v~~~~~~~~a~~~~~~--~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~ 104 (127)
T 2jba_A 27 FQPVEAEDYDSAVNQLNE--PWPDLILLAWMLPGGSGIQFIKHLRRESMTRDIPVVMLTARGEEEDRVRGLETGADDCIT 104 (127)
T ss_dssp CEEEEECSHHHHHTTCSS--SCCSEEEEESEETTEEHHHHHHHHHTSTTTTTSCEEEEEETTHHHHHHTTCCCSCSEEEE
T ss_pred ceEEEeCCHHHHHHHHhc--cCCCEEEEecCCCCCCHHHHHHHHHhCcccCCCCEEEEeCCCCHHHHHHHHhcCCCeEEe
Confidence 578899999999999887 789999999999999999999999986545789999999998888889999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhc
Q 044790 81 KPIRKNELQNLWQHVWRKC 99 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l~~~ 99 (162)
||++.++|..+|+.++++.
T Consensus 105 Kp~~~~~l~~~i~~~~~~~ 123 (127)
T 2jba_A 105 KPFSPKELVARIKAVMRRI 123 (127)
T ss_dssp ESCCHHHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHhcc
Confidence 9999999999999988764
No 52
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=99.78 E-value=1.8e-18 Score=121.99 Aligned_cols=93 Identities=32% Similarity=0.507 Sum_probs=87.0
Q ss_pred CEEE-EEcCHHHHHHHHHhhCC--CccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCce
Q 044790 1 MAVI-AVENGLQAWKILEDLMD--QIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVY 77 (162)
Q Consensus 1 ~~v~-~a~~~~eal~~l~~~~~--~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~ 77 (162)
|+|. .+.++.+|++.+.+ . .||+||+|+.||+++|+++++.||+.. +.+|||++|+..+.+...+++..|+++
T Consensus 61 ~~v~~~~~~~~~al~~l~~--~~~~~dliilD~~l~~~~g~~~~~~lr~~~--~~~~ii~ls~~~~~~~~~~~~~~g~~~ 136 (157)
T 3hzh_A 61 FNIIDTAADGEEAVIKYKN--HYPNIDIVTLXITMPKMDGITCLSNIMEFD--KNARVIMISALGKEQLVKDCLIKGAKT 136 (157)
T ss_dssp CEEEEEESSHHHHHHHHHH--HGGGCCEEEECSSCSSSCHHHHHHHHHHHC--TTCCEEEEESCCCHHHHHHHHHTTCSE
T ss_pred CeEEEEECCHHHHHHHHHh--cCCCCCEEEEeccCCCccHHHHHHHHHhhC--CCCcEEEEeccCcHHHHHHHHHcCCCE
Confidence 5677 89999999999998 6 799999999999999999999999876 899999999999999999999999999
Q ss_pred EEeCCCCHHHHHHHHHHHHH
Q 044790 78 FLVKPIRKNELQNLWQHVWR 97 (162)
Q Consensus 78 ~l~KP~~~~~L~~~i~~~l~ 97 (162)
||.||++.++|..+|+++++
T Consensus 137 ~l~KP~~~~~l~~~i~~~l~ 156 (157)
T 3hzh_A 137 FIVKPLDRAKVLQRVMSVFV 156 (157)
T ss_dssp EEESSCCHHHHHHHHHHTTC
T ss_pred EEeCCCCHHHHHHHHHHHhc
Confidence 99999999999999998754
No 53
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=99.78 E-value=3e-18 Score=118.18 Aligned_cols=95 Identities=18% Similarity=0.326 Sum_probs=86.6
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHc-CCceEE
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSK-GAVYFL 79 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~-Ga~~~l 79 (162)
|.|..+.++.++++.+.. ..||+||+|+.||+++|+++++.|+... +.+|+|++|+..+......++.. |+++||
T Consensus 25 ~~v~~~~~~~~a~~~~~~--~~~dlvl~D~~lp~~~g~~~~~~l~~~~--~~~~ii~~s~~~~~~~~~~~~~~~ga~~~l 100 (139)
T 2jk1_A 25 FDVLTAQGAEAAIAILEE--EWVQVIICDQRMPGRTGVDFLTEVRERW--PETVRIIITGYTDSASMMAAINDAGIHQFL 100 (139)
T ss_dssp SCEEEESSHHHHHHHHHH--SCEEEEEEESCCSSSCHHHHHHHHHHHC--TTSEEEEEESCTTCHHHHHHHHHTTCCEEE
T ss_pred ceEEEcCCHHHHHHHHhc--CCCCEEEEeCCCCCCcHHHHHHHHHHhC--CCCcEEEEeCCCChHHHHHHHHhhchhhhc
Confidence 568899999999999998 7899999999999999999999999865 78999999998888888888876 599999
Q ss_pred eCCCCHHHHHHHHHHHHHhc
Q 044790 80 VKPIRKNELQNLWQHVWRKC 99 (162)
Q Consensus 80 ~KP~~~~~L~~~i~~~l~~~ 99 (162)
.||++.++|..+|+.++++.
T Consensus 101 ~KP~~~~~L~~~i~~~~~~~ 120 (139)
T 2jk1_A 101 TKPWHPEQLLSSARNAARMF 120 (139)
T ss_dssp ESSCCHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999988764
No 54
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=99.78 E-value=4.1e-18 Score=119.16 Aligned_cols=97 Identities=22% Similarity=0.345 Sum_probs=88.3
Q ss_pred EEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCC
Q 044790 3 VIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKP 82 (162)
Q Consensus 3 v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP 82 (162)
|..+.++.+|++.+.+ ..||+||+|+.||+++|+++++.|++.. +.+|||++|+..+.....+++..|+++||.||
T Consensus 44 v~~~~~~~~a~~~l~~--~~~dlii~d~~l~~~~g~~~~~~l~~~~--~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp 119 (152)
T 3eul_A 44 VGEADDGAAALELIKA--HLPDVALLDYRMPGMDGAQVAAAVRSYE--LPTRVLLISAHDEPAIVYQALQQGAAGFLLKD 119 (152)
T ss_dssp EEEESSHHHHHHHHHH--HCCSEEEEETTCSSSCHHHHHHHHHHTT--CSCEEEEEESCCCHHHHHHHHHTTCSEEEETT
T ss_pred EEEeCCHHHHHHHHHh--cCCCEEEEeCCCCCCCHHHHHHHHHhcC--CCCeEEEEEccCCHHHHHHHHHcCCCEEEecC
Confidence 4589999999999998 7899999999999999999999999875 89999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhccCCC
Q 044790 83 IRKNELQNLWQHVWRKCHSSS 103 (162)
Q Consensus 83 ~~~~~L~~~i~~~l~~~~~~~ 103 (162)
++.++|..+|+.++++.....
T Consensus 120 ~~~~~l~~~i~~~~~~~~~~~ 140 (152)
T 3eul_A 120 STRTEIVKAVLDCAKGRDVVA 140 (152)
T ss_dssp CCHHHHHHHHHHHHHCC----
T ss_pred CCHHHHHHHHHHHHcCCeeeC
Confidence 999999999999998866543
No 55
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=99.78 E-value=9.9e-19 Score=121.24 Aligned_cols=94 Identities=23% Similarity=0.383 Sum_probs=80.8
Q ss_pred EEE-EEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 2 AVI-AVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 2 ~v~-~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
.+. .+.++.++++.+.. ..||+||+|+.||+++|+++++.|++.. +.+|||++|+..+.....++++.|+++||.
T Consensus 30 ~~~~~~~~~~~al~~~~~--~~~dlvllD~~lp~~~g~~l~~~l~~~~--~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~ 105 (141)
T 3cu5_A 30 DQIDQADDGINAIQIALK--HPPNVLLTDVRMPRMDGIELVDNILKLY--PDCSVIFMSGYSDKEYLKAAIKFRAIRYVE 105 (141)
T ss_dssp SEEEEESSHHHHHHHHTT--SCCSEEEEESCCSSSCHHHHHHHHHHHC--TTCEEEEECCSTTTCCC------CCCEEEC
T ss_pred EEeeecccHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHhhC--CCCcEEEEeCCCcHHHHHHHHhCCccEEEe
Confidence 345 89999999999988 7899999999999999999999999865 789999999998888888999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhc
Q 044790 81 KPIRKNELQNLWQHVWRKC 99 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l~~~ 99 (162)
||++.++|..+|+.++++.
T Consensus 106 KP~~~~~L~~~i~~~~~~~ 124 (141)
T 3cu5_A 106 KPIDPSEIMDALKQSIQTV 124 (141)
T ss_dssp SSCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999999999999988764
No 56
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=99.78 E-value=1.3e-18 Score=132.60 Aligned_cols=96 Identities=23% Similarity=0.401 Sum_probs=90.1
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|+|..+.++.+|++.+.. ..||+||+|+.||+++|++++++||+.. +.+|||++|+....+...++++.|+++||.
T Consensus 154 ~~v~~a~~~~eal~~l~~--~~~dlvl~D~~mp~~~G~~l~~~ir~~~--~~~piI~lt~~~~~~~~~~~~~~G~~~~l~ 229 (254)
T 2ayx_A 154 YQCKTANDGVDALNVLSK--NHIDIVLSDVNMPNMDGYRLTQRIRQLG--LTLPVIGVTANALAEEKQRCLESGMDSCLS 229 (254)
T ss_dssp SEEEEECCSHHHHHHHHH--SCCSEEEEEESSCSSCCHHHHHHHHHHH--CCSCEEEEESSTTSHHHHHHHHCCCEEEEE
T ss_pred CEEEEECCHHHHHHHHHh--CCCCEEEEcCCCCCCCHHHHHHHHHhcC--CCCcEEEEECCCCHHHHHHHHHcCCceEEE
Confidence 678999999999999998 8899999999999999999999999876 789999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcc
Q 044790 81 KPIRKNELQNLWQHVWRKCH 100 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l~~~~ 100 (162)
||++.++|...|++++++.+
T Consensus 230 KP~~~~~L~~~l~~~~~~~~ 249 (254)
T 2ayx_A 230 KPVTLDVIKQTLTLYAERVR 249 (254)
T ss_dssp SSCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999887653
No 57
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=99.78 E-value=3.7e-18 Score=114.41 Aligned_cols=94 Identities=26% Similarity=0.336 Sum_probs=86.8
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|.|..+.++.+++..+.. ..||+||+|+.||+++|+++++.|+. . +.+|+|++|+........++++.|+++||.
T Consensus 26 ~~v~~~~~~~~~~~~~~~--~~~dlvi~D~~l~~~~g~~~~~~l~~-~--~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~ 100 (121)
T 1zh2_A 26 MRVFEAETLQRGLLEAAT--RKPDLIILDLGLPDGDGIEFIRDLRQ-W--SAVPVIVLSARSEESDKIAALDAGADDYLS 100 (121)
T ss_dssp CEEEEESSHHHHHHHHHH--HCCSEEEEESEETTEEHHHHHHHHHT-T--CCCCEEEEESCCSHHHHHHHHHHTCSEEEE
T ss_pred CEEEEeCCHHHHHHHHhc--CCCCEEEEeCCCCCCcHHHHHHHHHh-C--CCCcEEEEECCCCHHHHHHHHhcCCCeEEe
Confidence 568889999999999988 78999999999999999999999994 2 689999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhc
Q 044790 81 KPIRKNELQNLWQHVWRKC 99 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l~~~ 99 (162)
||++.++|..+|+.++++.
T Consensus 101 Kp~~~~~l~~~i~~~~~~~ 119 (121)
T 1zh2_A 101 KPFGIGELQARLRVALRRH 119 (121)
T ss_dssp SSCCHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhh
Confidence 9999999999999988764
No 58
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=99.78 E-value=3e-18 Score=118.30 Aligned_cols=98 Identities=22% Similarity=0.382 Sum_probs=88.2
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|+|..+.++.+|++.+.. ..||+||+|+ ||+++|+++++.|+... +.+|||+++...+.+....++..|+++||.
T Consensus 29 ~~v~~~~~~~~a~~~l~~--~~~dlvi~d~-~~~~~g~~~~~~l~~~~--~~~pii~ls~~~~~~~~~~~~~~g~~~~l~ 103 (142)
T 2qxy_A 29 FNVIWAKNEQEAFTFLRR--EKIDLVFVDV-FEGEESLNLIRRIREEF--PDTKVAVLSAYVDKDLIINSVKAGAVDYIL 103 (142)
T ss_dssp CEEEEESSHHHHHHHHTT--SCCSEEEEEC-TTTHHHHHHHHHHHHHC--TTCEEEEEESCCCHHHHHHHHHHTCSCEEE
T ss_pred CEEEEECCHHHHHHHHhc--cCCCEEEEeC-CCCCcHHHHHHHHHHHC--CCCCEEEEECCCCHHHHHHHHHCCcceeEe
Confidence 678899999999999998 8999999999 99999999999999865 789999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhccCCC
Q 044790 81 KPIRKNELQNLWQHVWRKCHSSS 103 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l~~~~~~~ 103 (162)
||++.++|..+|+.++++.....
T Consensus 104 kP~~~~~l~~~i~~~~~~~~~~~ 126 (142)
T 2qxy_A 104 KPFRLDYLLERVKKIISSTPRVT 126 (142)
T ss_dssp SSCCHHHHHHHHHHHHHC-----
T ss_pred CCCCHHHHHHHHHHHHhhccccc
Confidence 99999999999999988765443
No 59
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=99.78 E-value=9e-20 Score=125.31 Aligned_cols=94 Identities=17% Similarity=0.030 Sum_probs=87.1
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|+|..+.++.+|++.+.. .+||+||+|+.||+++|+++++.||+.. +.+|||++|+..+.+...++++.|+++||.
T Consensus 40 ~~v~~~~~~~~a~~~l~~--~~~dlvi~D~~l~~~~g~~~~~~l~~~~--~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~ 115 (135)
T 3snk_A 40 YDVRVSETDDFLKGPPAD--TRPGIVILDLGGGDLLGKPGIVEARALW--ATVPLIAVSDELTSEQTRVLVRMNASDWLH 115 (135)
T ss_dssp EEEEEECGGGGGGCCCTT--CCCSEEEEEEETTGGGGSTTHHHHHGGG--TTCCEEEEESCCCHHHHHHHHHTTCSEEEE
T ss_pred eEEEEeccHHHHHHHHhc--cCCCEEEEeCCCCCchHHHHHHHHHhhC--CCCcEEEEeCCCCHHHHHHHHHcCcHhhcc
Confidence 578899999999999988 8899999999999999999999999876 799999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHh
Q 044790 81 KPIRKNELQNLWQHVWRK 98 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l~~ 98 (162)
||++.++|..+|+.++++
T Consensus 116 KP~~~~~L~~~i~~~~~~ 133 (135)
T 3snk_A 116 KPLDGKELLNAVTFHDTG 133 (135)
T ss_dssp SSCCHHHHHHHHHHTC--
T ss_pred CCCCHHHHHHHHHHHhcc
Confidence 999999999999987654
No 60
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=99.77 E-value=6.7e-18 Score=115.03 Aligned_cols=98 Identities=20% Similarity=0.328 Sum_probs=82.9
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|+|..+.++.+|++.+.+ ..||+||+|+.||+++|++++++||+....+.++||+++..... ...++++.|+++||.
T Consensus 31 ~~v~~~~~~~~a~~~l~~--~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~~~~~~~-~~~~~~~~g~~~~l~ 107 (132)
T 3lte_A 31 WQVEIAHNGFDAGIKLST--FEPAIMTLDLSMPKLDGLDVIRSLRQNKVANQPKILVVSGLDKA-KLQQAVTEGADDYLE 107 (132)
T ss_dssp CEEEEESSHHHHHHHHHH--TCCSEEEEESCBTTBCHHHHHHHHHTTTCSSCCEEEEECCSCSH-HHHHHHHHTCCEEEC
T ss_pred cEEEEeCCHHHHHHHHHh--cCCCEEEEecCCCCCCHHHHHHHHHhcCccCCCeEEEEeCCChH-HHHHHHHhChHHHhh
Confidence 678899999999999998 89999999999999999999999998653345666666665554 788999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhccC
Q 044790 81 KPIRKNELQNLWQHVWRKCHS 101 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l~~~~~ 101 (162)
||++.++|..+|+++......
T Consensus 108 kP~~~~~l~~~i~~~~~~~~~ 128 (132)
T 3lte_A 108 KPFDNDALLDRIHDLVNEGHH 128 (132)
T ss_dssp SSCCHHHHHHHHHHHHC----
T ss_pred CCCCHHHHHHHHHHHcCCCCC
Confidence 999999999999998876543
No 61
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.77 E-value=1.1e-17 Score=114.49 Aligned_cols=101 Identities=22% Similarity=0.321 Sum_probs=90.6
Q ss_pred EEEEEcCHHHHHHHHHhh-----CCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCc
Q 044790 2 AVIAVENGLQAWKILEDL-----MDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAV 76 (162)
Q Consensus 2 ~v~~a~~~~eal~~l~~~-----~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~ 76 (162)
.|..+.++.++++.+... ...||+||+|+.||+++|+++++.||+....+.+|||++++....+...++++.|++
T Consensus 30 ~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~pii~ls~~~~~~~~~~~~~~g~~ 109 (140)
T 1k68_A 30 EVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNLPKKDGREVLAEIKSDPTLKRIPVVVLSTSINEDDIFHSYDLHVN 109 (140)
T ss_dssp EEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHHHHHHHHHSTTGGGSCEEEEESCCCHHHHHHHHHTTCS
T ss_pred eEEEECCHHHHHHHHHcccccccCCCCcEEEEecCCCcccHHHHHHHHHcCcccccccEEEEecCCcHHHHHHHHHhchh
Confidence 788999999999999751 047999999999999999999999998654468999999999999999999999999
Q ss_pred eEEeCCCCHHHHHHHHHHHHHhccCC
Q 044790 77 YFLVKPIRKNELQNLWQHVWRKCHSS 102 (162)
Q Consensus 77 ~~l~KP~~~~~L~~~i~~~l~~~~~~ 102 (162)
+||.||++.++|..+|+.+++++...
T Consensus 110 ~~l~kP~~~~~l~~~i~~~~~~~~~~ 135 (140)
T 1k68_A 110 CYITKSANLSQLFQIVKGIEEFWLST 135 (140)
T ss_dssp EEEECCSSHHHHHHHHHHHHHHHHTT
T ss_pred heecCCCCHHHHHHHHHHHHHHHccc
Confidence 99999999999999999998876543
No 62
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=99.77 E-value=5.8e-18 Score=118.40 Aligned_cols=96 Identities=16% Similarity=0.361 Sum_probs=89.1
Q ss_pred CEEEEEcCHHHHHHHHHhhCCC-ccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcC-CceE
Q 044790 1 MAVIAVENGLQAWKILEDLMDQ-IDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKG-AVYF 78 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~-~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~G-a~~~ 78 (162)
|+|..+.++.+|++.+.+ .. ||+||+|+.||+++|+++++.||... +.+|||++|+..+.....+++..| +++|
T Consensus 28 ~~v~~~~~~~~a~~~l~~--~~~~dlvi~D~~l~~~~g~~~~~~l~~~~--~~~~ii~~s~~~~~~~~~~~~~~g~~~~~ 103 (151)
T 3kcn_A 28 FEVTTCESGPEALACIKK--SDPFSVIMVDMRMPGMEGTEVIQKARLIS--PNSVYLMLTGNQDLTTAMEAVNEGQVFRF 103 (151)
T ss_dssp SEEEEESSHHHHHHHHHH--SCCCSEEEEESCCSSSCHHHHHHHHHHHC--SSCEEEEEECGGGHHHHHHHHHHTCCSEE
T ss_pred ceEEEeCCHHHHHHHHHc--CCCCCEEEEeCCCCCCcHHHHHHHHHhcC--CCcEEEEEECCCCHHHHHHHHHcCCeeEE
Confidence 578899999999999988 54 69999999999999999999999866 899999999999999999999999 9999
Q ss_pred EeCCCCHHHHHHHHHHHHHhcc
Q 044790 79 LVKPIRKNELQNLWQHVWRKCH 100 (162)
Q Consensus 79 l~KP~~~~~L~~~i~~~l~~~~ 100 (162)
|.||++.++|..+|+.++++..
T Consensus 104 l~KP~~~~~L~~~i~~~l~~~~ 125 (151)
T 3kcn_A 104 LNKPCQMSDIKAAINAGIKQYD 125 (151)
T ss_dssp EESSCCHHHHHHHHHHHHHHHH
T ss_pred EcCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999988754
No 63
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=99.77 E-value=3e-18 Score=130.10 Aligned_cols=95 Identities=20% Similarity=0.381 Sum_probs=89.4
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|.|..+.++.+|++.+.. ..||+||+|+.||+++|++++++||+. +.+|||++|+..+.+.+.++++.|+++||.
T Consensus 62 ~~v~~~~~~~~al~~~~~--~~~DlvllD~~lp~~~G~~l~~~lr~~---~~~~iI~lt~~~~~~~~~~a~~~Ga~~yl~ 136 (249)
T 3q9s_A 62 YVVDHADSAMNGLIKARE--DHPDLILLDLGLPDFDGGDVVQRLRKN---SALPIIVLTARDTVEEKVRLLGLGADDYLI 136 (249)
T ss_dssp CEEEEESSHHHHHHHHHH--SCCSEEEEECCSCHHHHHHHHHHHHTT---CCCCEEEEESCCSHHHHHHHHHHTCSEEEE
T ss_pred CEEEEeCCHHHHHHHHhc--CCCCEEEEcCCCCCCCHHHHHHHHHcC---CCCCEEEEECCCCHHHHHHHHHCCCcEEEE
Confidence 578899999999999998 899999999999999999999999973 689999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcc
Q 044790 81 KPIRKNELQNLWQHVWRKCH 100 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l~~~~ 100 (162)
||++.++|..+|+.++++..
T Consensus 137 Kp~~~~~L~~~i~~~l~~~~ 156 (249)
T 3q9s_A 137 KPFHPDELLARVKVQLRQRT 156 (249)
T ss_dssp SSCCHHHHHHHHHHHHCCCC
T ss_pred CCCCHHHHHHHHHHHHhhcc
Confidence 99999999999999988754
No 64
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=99.77 E-value=4e-18 Score=139.30 Aligned_cols=97 Identities=28% Similarity=0.404 Sum_probs=89.9
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|.|..+.++.+|++.+.. ..||+||+|+.||+++|+++++.||.....+.+|||++|+..+.....++++.|+++||.
T Consensus 26 ~~v~~a~~~~~al~~~~~--~~~dlvllD~~mp~~~G~~~~~~l~~~~~~~~~pii~lt~~~~~~~~~~a~~~Ga~~~l~ 103 (459)
T 1w25_A 26 YEVSTAMDGPTALAMAAR--DLPDIILLDVMMPGMDGFTVCRKLKDDPTTRHIPVVLITALDGRGDRIQGLESGASDFLT 103 (459)
T ss_dssp CEEEEESSHHHHHHHHHH--HCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEEEECSSCHHHHHHHHHHTCCEEEE
T ss_pred CEEEEECCHHHHHHHHhc--CCCCEEEEcCCCCCCCHHHHHHHHhcCcccCCCCEEEEECCCCHHHHHHHHHcCCCEEEe
Confidence 578899999999999998 789999999999999999999999986545789999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhc
Q 044790 81 KPIRKNELQNLWQHVWRKC 99 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l~~~ 99 (162)
||++.++|..+|+.+++..
T Consensus 104 KP~~~~~l~~~i~~~~~~~ 122 (459)
T 1w25_A 104 KPIDDVMLFARVRSLTRFK 122 (459)
T ss_dssp SSCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999999999999987653
No 65
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=99.77 E-value=1.5e-18 Score=127.50 Aligned_cols=95 Identities=19% Similarity=0.369 Sum_probs=88.8
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|+|..+.++.++++.+.. ..||+||+|+.||+++|+++++.|+... +.+|||++|+..+.+....+++.|+++||.
T Consensus 29 ~~v~~~~~~~~al~~~~~--~~~dlvl~D~~lp~~~g~~~~~~l~~~~--~~~~ii~ls~~~~~~~~~~a~~~Ga~~~l~ 104 (208)
T 1yio_A 29 FEVETFDCASTFLEHRRP--EQHGCLVLDMRMPGMSGIELQEQLTAIS--DGIPIVFITAHGDIPMTVRAMKAGAIEFLP 104 (208)
T ss_dssp CEEEEESSHHHHHHHCCT--TSCEEEEEESCCSSSCHHHHHHHHHHTT--CCCCEEEEESCTTSCCCHHHHHTTEEEEEE
T ss_pred ceEEEcCCHHHHHHhhhc--cCCCEEEEeCCCCCCCHHHHHHHHHhcC--CCCCEEEEeCCCCHHHHHHHHHCCCcEEEe
Confidence 578899999999999987 7899999999999999999999999865 789999999999888899999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhc
Q 044790 81 KPIRKNELQNLWQHVWRKC 99 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l~~~ 99 (162)
||++.++|..+|+.++++.
T Consensus 105 Kp~~~~~L~~~i~~~~~~~ 123 (208)
T 1yio_A 105 KPFEEQALLDAIEQGLQLN 123 (208)
T ss_dssp SSCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhhh
Confidence 9999999999999988764
No 66
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=99.77 E-value=5.3e-18 Score=125.78 Aligned_cols=97 Identities=22% Similarity=0.365 Sum_probs=90.8
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|+|..+.++.+|++.+.. ..||+||+|+.||+++|+++++.||+.. +.+|||++|+..+......++..|+++||.
T Consensus 27 ~~v~~~~~~~~a~~~~~~--~~~dlvllD~~l~~~~g~~~~~~lr~~~--~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~ 102 (225)
T 1kgs_A 27 FTVDVCYDGEEGMYMALN--EPFDVVILDIMLPVHDGWEILKSMRESG--VNTPVLMLTALSDVEYRVKGLNMGADDYLP 102 (225)
T ss_dssp CEEEEESSHHHHHHHHHH--SCCSEEEEESCCSSSCHHHHHHHHHHTT--CCCCEEEEESSCHHHHHHHTCCCCCSEEEE
T ss_pred CEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHhcC--CCCCEEEEeCCCCHHHHHHHHhCCccEEEe
Confidence 578899999999999998 8999999999999999999999999865 799999999999989999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhccC
Q 044790 81 KPIRKNELQNLWQHVWRKCHS 101 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l~~~~~ 101 (162)
||++.++|..+|+.++++...
T Consensus 103 Kp~~~~~l~~~i~~~~~~~~~ 123 (225)
T 1kgs_A 103 KPFDLRELIARVRALIRRKSE 123 (225)
T ss_dssp SSCCHHHHHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHhhccc
Confidence 999999999999999987643
No 67
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=99.77 E-value=3.4e-18 Score=126.28 Aligned_cols=98 Identities=22% Similarity=0.335 Sum_probs=82.9
Q ss_pred EEEEEcCHHHHHHHHHhh-----------CCCccEEEEcCCCCCCCHHHHHHHHHccCC--CCCCcEEEEecCC-CHHHH
Q 044790 2 AVIAVENGLQAWKILEDL-----------MDQIDLVLTEVLMPCLSGIGLLRKIMNHKT--CKNIPVIMMSSHD-SMSIV 67 (162)
Q Consensus 2 ~v~~a~~~~eal~~l~~~-----------~~~~DlvllD~~mp~~~g~~~~~~ir~~~~--~~~~piI~lt~~~-~~~~~ 67 (162)
.|..+.++.+|++.+... ...||+||+|+.||+++|++++++||+... .+.+|||++|+.. ..+..
T Consensus 88 ~v~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~lp~~~G~el~~~lr~~~~~~~~~~piI~ls~~~~~~~~~ 167 (206)
T 3mm4_A 88 EVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQMPEMDGYEATREIRKVEKSYGVRTPIIAVSGHDPGSEEA 167 (206)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESCCSSSCHHHHHHHHHHHHHTTTCCCCEEEEESSCCCHHHH
T ss_pred eeeeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcCCCCCCCHHHHHHHHHhhhhhcCCCCcEEEEECCCCcHHHH
Confidence 788999999999999871 027999999999999999999999997521 2789999999988 77888
Q ss_pred HHHHHcCCceEEeCCCCHHHHHHHHHHHHHhccC
Q 044790 68 FKCLSKGAVYFLVKPIRKNELQNLWQHVWRKCHS 101 (162)
Q Consensus 68 ~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~~~~ 101 (162)
.++++.|+++||.||++ +|..+|+.+++++..
T Consensus 168 ~~~~~~Ga~~~l~KP~~--~L~~~i~~~l~~~~~ 199 (206)
T 3mm4_A 168 RETIQAGMDAFLDKSLN--QLANVIREIESKRHL 199 (206)
T ss_dssp HHHHHHTCSEEEETTCT--THHHHHHHHC-----
T ss_pred HHHHhCCCCEEEcCcHH--HHHHHHHHHHhhhHH
Confidence 99999999999999998 999999998876543
No 68
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=99.76 E-value=6.7e-18 Score=116.01 Aligned_cols=98 Identities=17% Similarity=0.353 Sum_probs=88.5
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCC-----CCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCC
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMP-----CLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGA 75 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp-----~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga 75 (162)
|+|..+.++.++++.+.. ..||+||+|+.|| +++|+++++.|++.. +.+|||++|+....+....+++.|+
T Consensus 28 ~~v~~~~~~~~a~~~l~~--~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~--~~~~ii~ls~~~~~~~~~~~~~~g~ 103 (140)
T 2qr3_A 28 SKVITLSSPVSLSTVLRE--ENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQY--RDLPVVLFTAYADIDLAVRGIKEGA 103 (140)
T ss_dssp SEEEEECCHHHHHHHHHH--SCEEEEEEETTTTC-----CCHHHHHHHHHHHC--TTCCEEEEEEGGGHHHHHHHHHTTC
T ss_pred cEEEEeCCHHHHHHHHHc--CCCCEEEEeCCcCCCCCCCccHHHHHHHHHhhC--cCCCEEEEECCCCHHHHHHHHHcCc
Confidence 578899999999999998 8899999999999 999999999999865 7999999999999999999999999
Q ss_pred ceEEeCCCCHHHHHHHHHHHHHhccCC
Q 044790 76 VYFLVKPIRKNELQNLWQHVWRKCHSS 102 (162)
Q Consensus 76 ~~~l~KP~~~~~L~~~i~~~l~~~~~~ 102 (162)
++||.||++.++|..+|+.++++....
T Consensus 104 ~~~l~kp~~~~~l~~~l~~~~~~~~~~ 130 (140)
T 2qr3_A 104 SDFVVKPWDNQKLLETLLNAASQAKDG 130 (140)
T ss_dssp CEEEEESCCHHHHHHHHHHHHTCC---
T ss_pred hheeeCCCCHHHHHHHHHHHHHhcccc
Confidence 999999999999999999998875443
No 69
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=99.76 E-value=1.2e-18 Score=120.17 Aligned_cols=101 Identities=18% Similarity=0.357 Sum_probs=91.2
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|+|..+.++.++++.+.. ..||+||+|+.||+++|+++++.|++....+.+|||+++..........+++.|+++||.
T Consensus 32 ~~v~~~~~~~~a~~~l~~--~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~ 109 (142)
T 3cg4_A 32 FHIISADSGGQCIDLLKK--GFSGVVLLDIMMPGMDGWDTIRAILDNSLEQGIAIVMLTAKNAPDAKMIGLQEYVVDYIT 109 (142)
T ss_dssp CEEEEESSHHHHHHHHHT--CCCEEEEEESCCSSSCHHHHHHHHHHTTCCTTEEEEEEECTTCCCCSSTTGGGGEEEEEE
T ss_pred eEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCCEEEEECCCCHHHHHHHHhcCccEEEe
Confidence 678899999999999998 889999999999999999999999984334789999999998888888999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhccCCC
Q 044790 81 KPIRKNELQNLWQHVWRKCHSSS 103 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l~~~~~~~ 103 (162)
||++.++|..+|+.++++.+...
T Consensus 110 kp~~~~~l~~~i~~~~~~~~~~~ 132 (142)
T 3cg4_A 110 KPFDNEDLIEKTTFFMGFVRNQT 132 (142)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHC-
T ss_pred CCCCHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999998765444
No 70
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=99.76 E-value=7.1e-18 Score=133.45 Aligned_cols=94 Identities=20% Similarity=0.293 Sum_probs=86.9
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|+|..+.++.+|++.+.. ..||+||+|+.||+++|+++++.||.....+.+|||++|+..+......+++.|+++||.
T Consensus 44 ~~v~~~~~~~~al~~~~~--~~~dlvl~D~~mp~~~G~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~a~~~Ga~~~l~ 121 (358)
T 3bre_A 44 IDFHFCSDPQQAVAVANQ--IKPTVILQDLVMPGVDGLTLLAAYRGNPATRDIPIIVLSTKEEPTVKSAAFAAGANDYLV 121 (358)
T ss_dssp EEEEEECCHHHHHHHHHH--HCCSEEEEESBCSSSBHHHHHHHHTTSTTTTTSCEEEEESSCCHHHHHHHHHTTCSEEEE
T ss_pred cEEEEeCCHHHHHHHHHh--CCCCEEEEeCCCCCCCHHHHHHHHhcCcccCCCcEEEEeCCCCHHHHHHHHhcChheEee
Confidence 467889999999999998 789999999999999999999999986545789999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 044790 81 KPIRKNELQNLWQHVW 96 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l 96 (162)
||++.++|..+|+.++
T Consensus 122 Kp~~~~~l~~~v~~~~ 137 (358)
T 3bre_A 122 KLPDAIELVARIRYHS 137 (358)
T ss_dssp SCCCHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHH
Confidence 9999999999998764
No 71
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.76 E-value=1.9e-17 Score=114.55 Aligned_cols=101 Identities=21% Similarity=0.305 Sum_probs=90.3
Q ss_pred EEEEEcCHHHHHHHHHhhC--------CCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHc
Q 044790 2 AVIAVENGLQAWKILEDLM--------DQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSK 73 (162)
Q Consensus 2 ~v~~a~~~~eal~~l~~~~--------~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~ 73 (162)
.|..+.++.+|++.+.... ..||+||+|+.||+++|++++++|++....+.+|||++|+.........+++.
T Consensus 34 ~v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~t~~~~~~~~~~~~~~ 113 (149)
T 1k66_A 34 PIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGTDGREVLQEIKQDEVLKKIPVVIMTTSSNPKDIEICYSY 113 (149)
T ss_dssp CEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSSCHHHHHHHHTTSTTGGGSCEEEEESCCCHHHHHHHHHT
T ss_pred eEEEECCHHHHHHHHHhcccccCcccCCCCcEEEEECCCCCCCHHHHHHHHHhCcccCCCeEEEEeCCCCHHHHHHHHHC
Confidence 6889999999999998511 36999999999999999999999998644468999999999999999999999
Q ss_pred CCceEEeCCCCHHHHHHHHHHHHHhccCC
Q 044790 74 GAVYFLVKPIRKNELQNLWQHVWRKCHSS 102 (162)
Q Consensus 74 Ga~~~l~KP~~~~~L~~~i~~~l~~~~~~ 102 (162)
|+++||.||++.++|...|+.+++++...
T Consensus 114 g~~~~l~kP~~~~~l~~~i~~~~~~~~~~ 142 (149)
T 1k66_A 114 SISSYIVKPLEIDRLTETVQTFIKYWLDI 142 (149)
T ss_dssp TCSEEEECCSSHHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEeCCCCHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999887543
No 72
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=99.76 E-value=1.2e-17 Score=114.78 Aligned_cols=98 Identities=18% Similarity=0.333 Sum_probs=90.0
Q ss_pred CEEE-EEcCHHHHHHHHHhhCCCccEEEEcCCCC-CCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceE
Q 044790 1 MAVI-AVENGLQAWKILEDLMDQIDLVLTEVLMP-CLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYF 78 (162)
Q Consensus 1 ~~v~-~a~~~~eal~~l~~~~~~~DlvllD~~mp-~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~ 78 (162)
|+|. .+.++.++++.+.. ..||+||+|+.|| +++|+++++.|+.. +.+|||+++...+......+++.|+++|
T Consensus 34 ~~v~~~~~~~~~a~~~~~~--~~~dlii~d~~~~~~~~g~~~~~~l~~~---~~~~ii~ls~~~~~~~~~~~~~~g~~~~ 108 (140)
T 3cg0_A 34 YDVLGVFDNGEEAVRCAPD--LRPDIALVDIMLCGALDGVETAARLAAG---CNLPIIFITSSQDVETFQRAKRVNPFGY 108 (140)
T ss_dssp CEEEEEESSHHHHHHHHHH--HCCSEEEEESSCCSSSCHHHHHHHHHHH---SCCCEEEEECCCCHHHHHHHHTTCCSEE
T ss_pred CeeEEEECCHHHHHHHHHh--CCCCEEEEecCCCCCCCHHHHHHHHHhC---CCCCEEEEecCCCHHHHHHHHhcCCCEE
Confidence 5677 59999999999998 7899999999998 79999999999986 6899999999999999999999999999
Q ss_pred EeCCCCHHHHHHHHHHHHHhccCCC
Q 044790 79 LVKPIRKNELQNLWQHVWRKCHSSS 103 (162)
Q Consensus 79 l~KP~~~~~L~~~i~~~l~~~~~~~ 103 (162)
|.||++.++|..+|+.++++.....
T Consensus 109 l~kp~~~~~l~~~i~~~~~~~~~~~ 133 (140)
T 3cg0_A 109 LAKPVAADTLHRSIEMAIHKKKLEE 133 (140)
T ss_dssp EEESCCHHHHHHHHHHHHHHHHHCC
T ss_pred EeCCCCHHHHHHHHHHHHhccccCC
Confidence 9999999999999999998765544
No 73
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=99.76 E-value=1.4e-17 Score=114.97 Aligned_cols=100 Identities=23% Similarity=0.318 Sum_probs=87.4
Q ss_pred EEEEEcCHHHHHHHHHhhC---CCccEEEEcCCCCCCCHHHHHHHHHccC--CCCCCcEEEEecCCCHHHHHHHHHcC-C
Q 044790 2 AVIAVENGLQAWKILEDLM---DQIDLVLTEVLMPCLSGIGLLRKIMNHK--TCKNIPVIMMSSHDSMSIVFKCLSKG-A 75 (162)
Q Consensus 2 ~v~~a~~~~eal~~l~~~~---~~~DlvllD~~mp~~~g~~~~~~ir~~~--~~~~~piI~lt~~~~~~~~~~a~~~G-a 75 (162)
.|..+.++.+|++.+.+.. ..||+||+|+.||+++|+++++.||+.. ..+.+|||++++..+......++..| +
T Consensus 37 ~v~~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~ 116 (146)
T 3ilh_A 37 EIQSVTSGNAAINKLNELYAAGRWPSIICIDINMPGINGWELIDLFKQHFQPMKNKSIVCLLSSSLDPRDQAKAEASDWV 116 (146)
T ss_dssp EEEEESSHHHHHHHHHHHHTSSCCCSEEEEESSCSSSCHHHHHHHHHHHCGGGTTTCEEEEECSSCCHHHHHHHHHCSSC
T ss_pred eeeecCCHHHHHHHHHHhhccCCCCCEEEEcCCCCCCCHHHHHHHHHHhhhhccCCCeEEEEeCCCChHHHHHHHhcCCc
Confidence 6889999999999997521 4699999999999999999999999832 33899999999999999999999999 9
Q ss_pred ceEEeCCCCHHHHHHHHHHHHHhccC
Q 044790 76 VYFLVKPIRKNELQNLWQHVWRKCHS 101 (162)
Q Consensus 76 ~~~l~KP~~~~~L~~~i~~~l~~~~~ 101 (162)
++||.||++.++|..+|+++......
T Consensus 117 ~~~l~KP~~~~~L~~~i~~~~~~~~~ 142 (146)
T 3ilh_A 117 DYYVSKPLTANALNNLYNKVLNEGHH 142 (146)
T ss_dssp CEEECSSCCHHHHHHHHHHHHCC---
T ss_pred ceeeeCCCCHHHHHHHHHHHHHhccC
Confidence 99999999999999999998776543
No 74
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=99.76 E-value=1.3e-17 Score=116.80 Aligned_cols=96 Identities=18% Similarity=0.353 Sum_probs=89.4
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcC-CceEE
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKG-AVYFL 79 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~G-a~~~l 79 (162)
|+|..+.++.+|++.+.. ..||+||+|+.||+++|+++++.|+... +.+|||++++..+......++..| +++||
T Consensus 32 ~~v~~~~~~~~a~~~l~~--~~~dlvi~d~~l~~~~g~~~~~~l~~~~--~~~~ii~ls~~~~~~~~~~~~~~g~~~~~l 107 (154)
T 2rjn_A 32 CNIITFTSPLDALEALKG--TSVQLVISDMRMPEMGGEVFLEQVAKSY--PDIERVVISGYADAQATIDAVNRGKISRFL 107 (154)
T ss_dssp CEEEEESCHHHHHHHHTT--SCCSEEEEESSCSSSCHHHHHHHHHHHC--TTSEEEEEECGGGHHHHHHHHHTTCCSEEE
T ss_pred CeEEEeCCHHHHHHHHhc--CCCCEEEEecCCCCCCHHHHHHHHHHhC--CCCcEEEEecCCCHHHHHHHHhccchheee
Confidence 578899999999999998 7899999999999999999999999865 789999999999888999999998 99999
Q ss_pred eCCCCHHHHHHHHHHHHHhcc
Q 044790 80 VKPIRKNELQNLWQHVWRKCH 100 (162)
Q Consensus 80 ~KP~~~~~L~~~i~~~l~~~~ 100 (162)
.||++.++|..+|+.++++..
T Consensus 108 ~kP~~~~~L~~~i~~~~~~~~ 128 (154)
T 2rjn_A 108 LKPWEDEDVFKVVEKGLQLAF 128 (154)
T ss_dssp ESSCCHHHHHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999987654
No 75
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=99.76 E-value=3.2e-18 Score=118.80 Aligned_cols=98 Identities=11% Similarity=0.194 Sum_probs=88.1
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|+|..+.++.+++..+.+....||+||+|+.||+++|+++++.||... +.+|||++|+..+.+...+++..|+++||.
T Consensus 46 ~~v~~~~~~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~--~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~ 123 (146)
T 4dad_A 46 YRVTRTVGRAAQIVQRTDGLDAFDILMIDGAALDTAELAAIEKLSRLH--PGLTCLLVTTDASSQTLLDAMRAGVRDVLR 123 (146)
T ss_dssp CEEEEECCCHHHHTTCHHHHTTCSEEEEECTTCCHHHHHHHHHHHHHC--TTCEEEEEESCCCHHHHHHHHTTTEEEEEE
T ss_pred eEEEEeCCHHHHHHHHHhcCCCCCEEEEeCCCCCccHHHHHHHHHHhC--CCCcEEEEeCCCCHHHHHHHHHhCCceeEc
Confidence 678889999988887654103699999999999999999999999876 899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcc
Q 044790 81 KPIRKNELQNLWQHVWRKCH 100 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l~~~~ 100 (162)
||++.++|..+|+.++++..
T Consensus 124 Kp~~~~~L~~~i~~~~~~~~ 143 (146)
T 4dad_A 124 WPLEPRALDDALKRAAAQCA 143 (146)
T ss_dssp SSCCHHHHHHHHHHHHHTCC
T ss_pred CCCCHHHHHHHHHHHHhhhc
Confidence 99999999999999988754
No 76
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=99.76 E-value=1e-17 Score=117.22 Aligned_cols=97 Identities=18% Similarity=0.336 Sum_probs=89.3
Q ss_pred CEEE-EEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEE
Q 044790 1 MAVI-AVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFL 79 (162)
Q Consensus 1 ~~v~-~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l 79 (162)
|.+. .+.++.++++.+.. ..||+||+|+.||+++|++++++|++.. +.+|||+++...+......++..|+++||
T Consensus 31 ~~v~~~~~~~~~a~~~l~~--~~~dlii~D~~l~~~~g~~~~~~l~~~~--~~~~ii~ls~~~~~~~~~~~~~~g~~~~l 106 (153)
T 3cz5_A 31 YAVVAEAADAGEAYRLYRE--TTPDIVVMDLTLPGPGGIEATRHIRQWD--GAARILIFTMHQGSAFALKAFEAGASGYV 106 (153)
T ss_dssp EEEEEEESSHHHHHHHHHT--TCCSEEEECSCCSSSCHHHHHHHHHHHC--TTCCEEEEESCCSHHHHHHHHHTTCSEEE
T ss_pred cEEEEEeCCHHHHHHHHhc--CCCCEEEEecCCCCCCHHHHHHHHHHhC--CCCeEEEEECCCCHHHHHHHHHCCCcEEE
Confidence 3566 89999999999998 8899999999999999999999999875 78999999999999999999999999999
Q ss_pred eCCCCHHHHHHHHHHHHHhccC
Q 044790 80 VKPIRKNELQNLWQHVWRKCHS 101 (162)
Q Consensus 80 ~KP~~~~~L~~~i~~~l~~~~~ 101 (162)
.||++.++|..+|+.++++...
T Consensus 107 ~kp~~~~~L~~~i~~~~~~~~~ 128 (153)
T 3cz5_A 107 TKSSDPAELVQAIEAILAGRRA 128 (153)
T ss_dssp ETTSCTTHHHHHHHHHTTTCCE
T ss_pred ecCCCHHHHHHHHHHHHhCCcc
Confidence 9999999999999998876543
No 77
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=99.76 E-value=3.9e-18 Score=113.77 Aligned_cols=90 Identities=24% Similarity=0.343 Sum_probs=81.5
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|+|..+.++.++++.+.. ..||+||+|+.||+++|+++++.||+.. +.+|||++|+..... ..++..|+++||.
T Consensus 26 ~~v~~~~~~~~a~~~~~~--~~~dlvl~D~~l~~~~g~~~~~~l~~~~--~~~~ii~~s~~~~~~--~~~~~~g~~~~l~ 99 (116)
T 3a10_A 26 YEIDTAENGEEALKKFFS--GNYDLVILDIEMPGISGLEVAGEIRKKK--KDAKIILLTAYSHYR--SDMSSWAADEYVV 99 (116)
T ss_dssp CEEEEESSHHHHHHHHHH--SCCSEEEECSCCSSSCHHHHHHHHHHHC--TTCCEEEEESCGGGG--GCGGGGGSSEEEE
T ss_pred CEEEEeCCHHHHHHHHhc--CCCCEEEEECCCCCCCHHHHHHHHHccC--CCCeEEEEECCcchH--HHHHhccccceEE
Confidence 578899999999999998 8899999999999999999999999865 789999999876554 6788899999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 044790 81 KPIRKNELQNLWQHVW 96 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l 96 (162)
||++.++|..+|+.++
T Consensus 100 Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 100 KSFNFDELKEKVKKLL 115 (116)
T ss_dssp CCSSTHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998764
No 78
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=99.75 E-value=3.6e-18 Score=137.34 Aligned_cols=94 Identities=31% Similarity=0.535 Sum_probs=84.0
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|+|..+.++.+|++.+.. ..||+||+|+.||+++|++++++||+.. +.+|||++|+..+.+...++++.|+++||.
T Consensus 30 ~~v~~a~~~~~al~~~~~--~~~dlvllD~~mp~~~G~~~~~~lr~~~--~~~pii~lt~~~~~~~~~~a~~~ga~~yl~ 105 (394)
T 3eq2_A 30 FKVLQALNGLQGLQIFES--EQPDLVICDLRMPQIDGLELIRRIRQTA--SETPIIVLSGAGVMSDAVEALRLGAADYLI 105 (394)
T ss_dssp EEEEECSSHHHHHHHHHH--SCCSEEEECCCSSSSCTHHHHHHHHHTT--CCCCEEEC---CHHHHHHHHHHHTCSEECC
T ss_pred CEEEEECCHHHHHHHHhh--CCCCEEEEcCCCCCCCHHHHHHHHHhhC--CCCcEEEEEcCCCHHHHHHHHhcChhhEEE
Confidence 578899999999999998 8999999999999999999999999865 899999999999999999999999999999
Q ss_pred CCC-CHHHHHHHHHHHHHh
Q 044790 81 KPI-RKNELQNLWQHVWRK 98 (162)
Q Consensus 81 KP~-~~~~L~~~i~~~l~~ 98 (162)
||+ ..++|..+|++++++
T Consensus 106 KP~~~~~~l~~~i~~~~~~ 124 (394)
T 3eq2_A 106 KPLEDLAVLEHSVRRALDR 124 (394)
T ss_dssp SSCSCTHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHhh
Confidence 999 688888888877664
No 79
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=99.75 E-value=1.2e-17 Score=117.14 Aligned_cols=96 Identities=23% Similarity=0.461 Sum_probs=89.6
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|+|..+.++.++++.+.. ..||+||+|+.||+++|+++++.|+... +.+|||+++...+......++..|+++||.
T Consensus 28 ~~v~~~~~~~~a~~~l~~--~~~dliild~~l~~~~g~~~~~~l~~~~--~~~pii~ls~~~~~~~~~~~~~~g~~~~l~ 103 (155)
T 1qkk_A 28 FTVSSFASATEALAGLSA--DFAGIVISDIRMPGMDGLALFRKILALD--PDLPMILVTGHGDIPMAVQAIQDGAYDFIA 103 (155)
T ss_dssp CEEEEESCHHHHHHTCCT--TCCSEEEEESCCSSSCHHHHHHHHHHHC--TTSCEEEEECGGGHHHHHHHHHTTCCEEEE
T ss_pred cEEEEECCHHHHHHHHHh--CCCCEEEEeCCCCCCCHHHHHHHHHhhC--CCCCEEEEECCCChHHHHHHHhcCCCeEEe
Confidence 678899999999999988 7899999999999999999999999875 799999999999989999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcc
Q 044790 81 KPIRKNELQNLWQHVWRKCH 100 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l~~~~ 100 (162)
||++.++|..+|+.++++..
T Consensus 104 kP~~~~~L~~~i~~~~~~~~ 123 (155)
T 1qkk_A 104 KPFAADRLVQSARRAEEKRR 123 (155)
T ss_dssp SSCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999987654
No 80
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.75 E-value=1.2e-17 Score=134.60 Aligned_cols=95 Identities=24% Similarity=0.466 Sum_probs=89.3
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|+|..+.++.+|++.+.. ..||+||+|+.||+++|++++++|+... +.+|||++|+..+.+...++++.|+++||.
T Consensus 25 ~~v~~a~~~~eal~~l~~--~~~DlvllD~~mp~~dG~ell~~lr~~~--~~~pvIvlT~~~~~~~~~~a~~~Ga~dyl~ 100 (387)
T 1ny5_A 25 IKVESAERGKEAYKLLSE--KHFNVVLLDLLLPDVNGLEILKWIKERS--PETEVIVITGHGTIKTAVEAMKMGAYDFLT 100 (387)
T ss_dssp CEEEEESSHHHHHHHHHH--SCCSEEEEESBCSSSBHHHHHHHHHHHC--TTSEEEEEEETTCHHHHHHHHTTTCCEEEE
T ss_pred CEEEEECCHHHHHHHHHh--CCCCEEEEeCCCCCCCHHHHHHHHHhhC--CCCcEEEEeCCCCHHHHHHHHhcCceEEec
Confidence 678999999999999998 8999999999999999999999999865 789999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhc
Q 044790 81 KPIRKNELQNLWQHVWRKC 99 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l~~~ 99 (162)
||++.++|..+|++++...
T Consensus 101 KP~~~~~L~~~i~~~l~~~ 119 (387)
T 1ny5_A 101 KPCMLEEIELTINKAIEHR 119 (387)
T ss_dssp ESCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999999999999887643
No 81
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=99.75 E-value=1.3e-17 Score=114.42 Aligned_cols=97 Identities=18% Similarity=0.298 Sum_probs=83.2
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCC---CCCcEEEEecCCCHHHHHHHHHcCCce
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTC---KNIPVIMMSSHDSMSIVFKCLSKGAVY 77 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~---~~~piI~lt~~~~~~~~~~a~~~Ga~~ 77 (162)
|+|..+.++.++++.+.. .+ |+||+|+.||+++|+++++.|++.... ...+||++|+..+.....++++.|+++
T Consensus 32 ~~v~~~~~~~~a~~~~~~--~~-dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~ 108 (136)
T 1dcf_A 32 CEVTTVSSNEECLRVVSH--EH-KVVFMDVCMPGVENYQIALRIHEKFTKQRHQRPLLVALSGNTDKSTKEKCMSFGLDG 108 (136)
T ss_dssp CEEEEESSHHHHHHHCCT--TC-SEEEEECCSSTTTTTHHHHHHHHHHC-CCSCCCEEEEEESCCSHHHHHHHHHTTCCE
T ss_pred CeEEEeCCHHHHHHHHhc--cC-CEEEEeCCCCCCcHHHHHHHHHHhhhhccCCCceEEEEeCCCCHHHHHHHHHcCCCe
Confidence 578899999999998876 55 999999999999999999999842211 123588899999999999999999999
Q ss_pred EEeCCCCHHHHHHHHHHHHHhcc
Q 044790 78 FLVKPIRKNELQNLWQHVWRKCH 100 (162)
Q Consensus 78 ~l~KP~~~~~L~~~i~~~l~~~~ 100 (162)
||.||++.++|..+|++++++..
T Consensus 109 ~l~KP~~~~~L~~~l~~~~~~~~ 131 (136)
T 1dcf_A 109 VLLKPVSLDNIRDVLSDLLEPRV 131 (136)
T ss_dssp EEESSCCHHHHHHHHHHHHSCCC
T ss_pred EEECCCCHHHHHHHHHHHhchhh
Confidence 99999999999999999886543
No 82
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=99.75 E-value=7.7e-18 Score=123.60 Aligned_cols=94 Identities=22% Similarity=0.394 Sum_probs=86.6
Q ss_pred CEEE-EEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEE
Q 044790 1 MAVI-AVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFL 79 (162)
Q Consensus 1 ~~v~-~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l 79 (162)
|+|. .+.++.+|++.+.. ..||+||+|+.||+++|+++++.|+... + .|||++|+..+.+....++..|+++||
T Consensus 38 ~~v~~~~~~~~~al~~~~~--~~~dlvi~D~~~p~~~g~~~~~~l~~~~--~-~pii~lt~~~~~~~~~~~~~~ga~~~l 112 (205)
T 1s8n_A 38 YEIVGEAGDGQEAVELAEL--HKPDLVIMDVKMPRRDGIDAASEIASKR--I-APIVVLTAFSQRDLVERARDAGAMAYL 112 (205)
T ss_dssp CEEEEEESSHHHHHHHHHH--HCCSEEEEESSCSSSCHHHHHHHHHHTT--C-SCEEEEEEGGGHHHHHTTGGGSCEEEE
T ss_pred CEEEEEeCCHHHHHHHHhh--cCCCEEEEeCCCCCCChHHHHHHHHhcC--C-CCEEEEecCCCHHHHHHHHhcCCcEEE
Confidence 5677 89999999999998 7899999999999999999999999864 3 499999999999999999999999999
Q ss_pred eCCCCHHHHHHHHHHHHHhc
Q 044790 80 VKPIRKNELQNLWQHVWRKC 99 (162)
Q Consensus 80 ~KP~~~~~L~~~i~~~l~~~ 99 (162)
.||++.++|..+|+.++++.
T Consensus 113 ~KP~~~~~L~~~i~~~~~~~ 132 (205)
T 1s8n_A 113 VKPFSISDLIPAIELAVSRF 132 (205)
T ss_dssp EESCCHHHHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999988764
No 83
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=99.74 E-value=6.6e-18 Score=116.69 Aligned_cols=97 Identities=19% Similarity=0.208 Sum_probs=87.8
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCC-CCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEE
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPC-LSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFL 79 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~-~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l 79 (162)
|+|..+.++.+|++.+.+. ..||+||+|+.||+ ++|+++++.||+. +.+|||++|+..+.+...+++..|+++||
T Consensus 30 ~~v~~~~~~~~a~~~l~~~-~~~dlvi~D~~l~~~~~g~~~~~~l~~~---~~~~ii~ls~~~~~~~~~~~~~~g~~~~l 105 (140)
T 3h5i_A 30 YTVEIALTGEAAVEKVSGG-WYPDLILMDIELGEGMDGVQTALAIQQI---SELPVVFLTAHTEPAVVEKIRSVTAYGYV 105 (140)
T ss_dssp CEEEEESSHHHHHHHHHTT-CCCSEEEEESSCSSSCCHHHHHHHHHHH---CCCCEEEEESSSSCCCCGGGGGSCEEEEE
T ss_pred CEEEEecChHHHHHHHhcC-CCCCEEEEeccCCCCCCHHHHHHHHHhC---CCCCEEEEECCCCHHHHHHHHhCCCcEEE
Confidence 6788999999999999752 47999999999995 9999999999975 68999999999988888899999999999
Q ss_pred eCCCCHHHHHHHHHHHHHhccC
Q 044790 80 VKPIRKNELQNLWQHVWRKCHS 101 (162)
Q Consensus 80 ~KP~~~~~L~~~i~~~l~~~~~ 101 (162)
.||++.++|..+|+.+++++..
T Consensus 106 ~KP~~~~~l~~~i~~~l~~~~~ 127 (140)
T 3h5i_A 106 MKSATEQVLITIVEMALRLYEA 127 (140)
T ss_dssp ETTCCHHHHHHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999987643
No 84
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=99.74 E-value=6.5e-18 Score=125.90 Aligned_cols=97 Identities=24% Similarity=0.392 Sum_probs=90.6
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|+|..+.++.+|++.+.. ..||+||+|+.||+++|+++++.|++.. +.+|||++|+..+......+++.|+++||.
T Consensus 32 ~~v~~~~~~~~a~~~~~~--~~~dlvllD~~l~~~~g~~~~~~l~~~~--~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~ 107 (233)
T 1ys7_A 32 FEVATAVDGAEALRSATE--NRPDAIVLDINMPVLDGVSVVTALRAMD--NDVPVCVLSARSSVDDRVAGLEAGADDYLV 107 (233)
T ss_dssp CEEEEESSHHHHHHHHHH--SCCSEEEEESSCSSSCHHHHHHHHHHTT--CCCCEEEEECCCTTTCCCTTTTTTCSEEEE
T ss_pred CEEEEECCHHHHHHHHHh--CCCCEEEEeCCCCCCCHHHHHHHHHhcC--CCCCEEEEEcCCCHHHHHHHHHcCCCEEEe
Confidence 578899999999999998 8999999999999999999999999865 789999999999888888999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhccC
Q 044790 81 KPIRKNELQNLWQHVWRKCHS 101 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l~~~~~ 101 (162)
||++.++|..+|+.++++...
T Consensus 108 Kp~~~~~L~~~i~~~~~~~~~ 128 (233)
T 1ys7_A 108 KPFVLAELVARVKALLRRRGS 128 (233)
T ss_dssp SSCCHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHhhccc
Confidence 999999999999999987654
No 85
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=99.74 E-value=2e-17 Score=111.43 Aligned_cols=95 Identities=18% Similarity=0.237 Sum_probs=86.8
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCC-CCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEE
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMP-CLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFL 79 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp-~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l 79 (162)
|+|..+.++.++++.+.. ..||+||+|+.|| +++|++++++||+....+.+|||++ +.........+++.|+++||
T Consensus 30 ~~v~~~~~~~~a~~~~~~--~~~dlvi~d~~~~~~~~g~~~~~~l~~~~~~~~~~ii~~-~~~~~~~~~~~~~~g~~~~l 106 (127)
T 2gkg_A 30 FTVDETTDGKGSVEQIRR--DRPDLVVLAVDLSAGQNGYLICGKLKKDDDLKNVPIVII-GNPDGFAQHRKLKAHADEYV 106 (127)
T ss_dssp CEEEEECCHHHHHHHHHH--HCCSEEEEESBCGGGCBHHHHHHHHHHSTTTTTSCEEEE-ECGGGHHHHHHSTTCCSEEE
T ss_pred ceEEEecCHHHHHHHHHh--cCCCEEEEeCCCCCCCCHHHHHHHHhcCccccCCCEEEE-ecCCchhHHHHHHhCcchhe
Confidence 678899999999999998 7899999999999 9999999999998744478999999 88888888999999999999
Q ss_pred eCCCCHHHHHHHHHHHHHh
Q 044790 80 VKPIRKNELQNLWQHVWRK 98 (162)
Q Consensus 80 ~KP~~~~~L~~~i~~~l~~ 98 (162)
.||++.++|..+|+.+++.
T Consensus 107 ~kp~~~~~l~~~i~~~~~~ 125 (127)
T 2gkg_A 107 AKPVDADQLVERAGALIGF 125 (127)
T ss_dssp ESSCCHHHHHHHHHHHHCC
T ss_pred eCCCCHHHHHHHHHHHHcC
Confidence 9999999999999988653
No 86
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=99.73 E-value=7.3e-17 Score=111.40 Aligned_cols=94 Identities=17% Similarity=0.387 Sum_probs=83.4
Q ss_pred EEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCC
Q 044790 3 VIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKP 82 (162)
Q Consensus 3 v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP 82 (162)
|..+.++.++++.+.. ..||+||+|+.||+++|+++++.|++.. +.+|||+++... +...+++..|+++||.||
T Consensus 38 v~~~~~~~~al~~l~~--~~~dlvi~d~~l~~~~g~~~~~~l~~~~--~~~~ii~~s~~~--~~~~~~~~~g~~~~l~KP 111 (143)
T 2qv0_A 38 VGSFDDGLDVLKFLQH--NKVDAIFLDINIPSLDGVLLAQNISQFA--HKPFIVFITAWK--EHAVEAFELEAFDYILKP 111 (143)
T ss_dssp EEEESCHHHHHHHHHH--CCCSEEEECSSCSSSCHHHHHHHHTTST--TCCEEEEEESCC--TTHHHHHHTTCSEEEESS
T ss_pred EEEeCCHHHHHHHHHh--CCCCEEEEecCCCCCCHHHHHHHHHccC--CCceEEEEeCCH--HHHHHHHhCCcceEEeCC
Confidence 4588999999999998 8899999999999999999999999865 677899999864 357789999999999999
Q ss_pred CCHHHHHHHHHHHHHhccCC
Q 044790 83 IRKNELQNLWQHVWRKCHSS 102 (162)
Q Consensus 83 ~~~~~L~~~i~~~l~~~~~~ 102 (162)
++.++|...|+.+++.+...
T Consensus 112 ~~~~~l~~~i~~~~~~~~~~ 131 (143)
T 2qv0_A 112 YQESRIINMLQKLTTAWEQQ 131 (143)
T ss_dssp CCHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHhc
Confidence 99999999999998876533
No 87
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=99.72 E-value=7.4e-18 Score=114.97 Aligned_cols=96 Identities=19% Similarity=0.290 Sum_probs=84.6
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCH-----HHHHHHHHcCC
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSM-----SIVFKCLSKGA 75 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~-----~~~~~a~~~Ga 75 (162)
+.|..+.++.++++.+.. . ||+||+|+.||+++|+++++.||+.. +.+|||++++.... +...+++..|+
T Consensus 28 ~~v~~~~~~~~~~~~~~~--~-~dlvi~D~~l~~~~g~~~~~~l~~~~--~~~~ii~~s~~~~~~~~~~~~~~~~~~~g~ 102 (135)
T 3eqz_A 28 GNVEAFQHPRAFLTLSLN--K-QDIIILDLMMPDMDGIEVIRHLAEHK--SPASLILISGYDSGVLHSAETLALSCGLNV 102 (135)
T ss_dssp SCEEEESCHHHHTTSCCC--T-TEEEEEECCTTTTHHHHHHHHHHHTT--CCCEEEEEESSCHHHHHHHHHHHHHTTCEE
T ss_pred ceeeeecCHHHHHHhhcc--C-CCEEEEeCCCCCCCHHHHHHHHHhCC--CCCCEEEEEeccchhHHHHHHHHHHcCCCc
Confidence 367899999999998877 6 99999999999999999999999866 88999999998774 66777899999
Q ss_pred ceEEeCCCCHHHHHHHHHHHHHhccC
Q 044790 76 VYFLVKPIRKNELQNLWQHVWRKCHS 101 (162)
Q Consensus 76 ~~~l~KP~~~~~L~~~i~~~l~~~~~ 101 (162)
++||.||++.++|..+|++++.+...
T Consensus 103 ~~~l~KP~~~~~l~~~l~~~~~~~~~ 128 (135)
T 3eqz_A 103 INTFTKPINTEVLTCFLTSLSNRQAE 128 (135)
T ss_dssp EEEEESSCCHHHHHHHHHHHSCCC--
T ss_pred ceeeCCCCCHHHHHHHHHHHHhhccc
Confidence 99999999999999999998766543
No 88
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=99.71 E-value=4e-17 Score=121.50 Aligned_cols=94 Identities=26% Similarity=0.400 Sum_probs=88.0
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|+|..+.++.+|++.+.. ..||+||+|+.||+++|+++++.||.. +.+|||++|+..+......+++.|+++||.
T Consensus 29 ~~v~~~~~~~~al~~~~~--~~~dlvllD~~l~~~~g~~~~~~l~~~---~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~ 103 (230)
T 2oqr_A 29 FEATVVTDGPAALAEFDR--AGADIVLLDLMLPGMSGTDVCKQLRAR---SSVPVIMVTARDSEIDKVVGLELGADDYVT 103 (230)
T ss_dssp CEEEEECSHHHHHHHHHH--HCCSEEEEESSCSSSCHHHHHHHHHHH---CSCSEEEEECCHHHHHHHHHHHHCCSCCCC
T ss_pred CEEEEECCHHHHHHHHhc--cCCCEEEEECCCCCCCHHHHHHHHHcC---CCCCEEEEeCCCcHHHHHHHHHcCCCEEEe
Confidence 578899999999999988 789999999999999999999999984 589999999998888899999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhc
Q 044790 81 KPIRKNELQNLWQHVWRKC 99 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l~~~ 99 (162)
||++.++|..+|+.++++.
T Consensus 104 Kp~~~~~l~~~i~~~~~~~ 122 (230)
T 2oqr_A 104 KPYSARELIARIRAVLRRG 122 (230)
T ss_dssp SSCCHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHhhc
Confidence 9999999999999998875
No 89
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=99.71 E-value=1.4e-16 Score=109.77 Aligned_cols=97 Identities=19% Similarity=0.251 Sum_probs=85.6
Q ss_pred EEEEEcCHHHHHHHHHhhC----CCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCce
Q 044790 2 AVIAVENGLQAWKILEDLM----DQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVY 77 (162)
Q Consensus 2 ~v~~a~~~~eal~~l~~~~----~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~ 77 (162)
.|..+.++.++++.+.... ..||+||+|+.||+++|+++++.||+....+.+|||+++.....+....+++.|+++
T Consensus 35 ~v~~~~~~~~a~~~l~~~~~~~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~ 114 (143)
T 2qvg_A 35 KIEIAKSGNQALDMLYGRNKENKIHPKLILLDINIPKMNGIEFLKELRDDSSFTDIEVFVLTAAYTSKDKLAFESLNIRG 114 (143)
T ss_dssp CEEEESSHHHHHHHHHTCTTCCCCCCSEEEEETTCTTSCHHHHHHHHTTSGGGTTCEEEEEESCCCHHHHHHHTTTTCCE
T ss_pred eEEEECCHHHHHHHHHhcccccCCCCCEEEEecCCCCCCHHHHHHHHHcCccccCCcEEEEeCCCCHHHHHHHHhcCCCe
Confidence 6889999999999997410 479999999999999999999999986444689999999999999999999999999
Q ss_pred EEeCCCCHHHHHHHHHHHHHh
Q 044790 78 FLVKPIRKNELQNLWQHVWRK 98 (162)
Q Consensus 78 ~l~KP~~~~~L~~~i~~~l~~ 98 (162)
||.||++.++|..++......
T Consensus 115 ~l~kP~~~~~L~~~~~~~~~~ 135 (143)
T 2qvg_A 115 HLIKPLDYGEAIKLFWILQSM 135 (143)
T ss_dssp EEESSCCHHHHHHHHHHHHHC
T ss_pred EEECCCCHHHHHHHHHHHHHh
Confidence 999999999999998765443
No 90
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=99.71 E-value=1.3e-16 Score=108.36 Aligned_cols=96 Identities=21% Similarity=0.306 Sum_probs=85.1
Q ss_pred CEEEEEcCHHHHHHHHHhhCC-CccEEEEcCCCCC-CCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceE
Q 044790 1 MAVIAVENGLQAWKILEDLMD-QIDLVLTEVLMPC-LSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYF 78 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~-~~DlvllD~~mp~-~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~ 78 (162)
|+|..+.++.++++.+.. . .||+||+|+.||+ ++|+++++.|++.. +.+|||++++.........++..| +|
T Consensus 30 ~~v~~~~~~~~a~~~l~~--~~~~dlvi~d~~l~~~~~g~~~~~~l~~~~--~~~~ii~~s~~~~~~~~~~~~~~~--~~ 103 (132)
T 2rdm_A 30 FLVTAVSSGAKAIEMLKS--GAAIDGVVTDIRFCQPPDGWQVARVAREID--PNMPIVYISGHAALEWASNGVPDS--II 103 (132)
T ss_dssp CEEEEESSHHHHHHHHHT--TCCCCEEEEESCCSSSSCHHHHHHHHHHHC--TTCCEEEEESSCCTTHHHHSCTTC--EE
T ss_pred CEEEEECCHHHHHHHHHc--CCCCCEEEEeeeCCCCCCHHHHHHHHHhcC--CCCCEEEEeCCccHHHHHhhcCCc--ce
Confidence 578899999999999998 7 8999999999997 99999999999875 789999999998888877777765 89
Q ss_pred EeCCCCHHHHHHHHHHHHHhccCC
Q 044790 79 LVKPIRKNELQNLWQHVWRKCHSS 102 (162)
Q Consensus 79 l~KP~~~~~L~~~i~~~l~~~~~~ 102 (162)
|.||++.++|..+|++++......
T Consensus 104 l~kP~~~~~l~~~i~~~~~~~~~~ 127 (132)
T 2rdm_A 104 LEKPFTSAQLITAVSQLLNAREGH 127 (132)
T ss_dssp EESSCCHHHHHHHHHHHHHTTC--
T ss_pred EeCCCCHHHHHHHHHHHHhcCCCC
Confidence 999999999999999998876543
No 91
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=99.71 E-value=6.6e-18 Score=126.04 Aligned_cols=95 Identities=20% Similarity=0.241 Sum_probs=88.6
Q ss_pred EEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCC
Q 044790 3 VIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKP 82 (162)
Q Consensus 3 v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP 82 (162)
|..+.++.+|++.+.. ..||+||+|+.||+++|+++++.||+.. +.+|||++|+..+.+....+++.|+++||.||
T Consensus 30 v~~~~~~~~al~~l~~--~~~dlvllD~~lp~~~g~~~~~~lr~~~--~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp 105 (225)
T 3c3w_A 30 VGEAGSVAEAMARVPA--ARPDVAVLDVRLPDGNGIELCRDLLSRM--PDLRCLILTSYTSDEAMLDAILAGASGYVVKD 105 (225)
T ss_dssp EEEESSHHHHHHHHHH--HCCSEEEECSEETTEEHHHHHHHHHHHC--TTCEEEEGGGSSSHHHHHHHHHHTCCCHHHHH
T ss_pred EEEECCHHHHHHHHhh--cCCCEEEEeCCCCCCCHHHHHHHHHHhC--CCCcEEEEECCCCHHHHHHHHHCCCCEEEECC
Confidence 3479999999999998 7899999999999999999999999865 79999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhccC
Q 044790 83 IRKNELQNLWQHVWRKCHS 101 (162)
Q Consensus 83 ~~~~~L~~~i~~~l~~~~~ 101 (162)
++.++|..+|+.++++...
T Consensus 106 ~~~~~L~~~i~~~~~~~~~ 124 (225)
T 3c3w_A 106 IKGMELARAVKDVGAGRSL 124 (225)
T ss_dssp HHHHHHHHHHHHHHHHGGG
T ss_pred CCHHHHHHHHHHHHcCCee
Confidence 9999999999999988654
No 92
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=99.70 E-value=1.4e-16 Score=113.24 Aligned_cols=92 Identities=30% Similarity=0.373 Sum_probs=80.5
Q ss_pred EEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHH--HHHHHHHcCCceEEe
Q 044790 3 VIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMS--IVFKCLSKGAVYFLV 80 (162)
Q Consensus 3 v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~--~~~~a~~~Ga~~~l~ 80 (162)
|..+.++.+|++.+.. ..||+||+|+.||+++|++++++||+.. + +|||+++...+.. ...+++..|+++||.
T Consensus 54 v~~~~~~~~al~~l~~--~~~dlvilD~~l~~~~g~~l~~~lr~~~--~-~~ii~~s~~~~~~~~~~~~~~~~ga~~~l~ 128 (164)
T 3t8y_A 54 VGFAKDGLEAVEKAIE--LKPDVITMDIEMPNLNGIEALKLIMKKA--P-TRVIMVSSLTEEGAAITIEALRNGAVDFIT 128 (164)
T ss_dssp EEEESSHHHHHHHHHH--HCCSEEEECSSCSSSCHHHHHHHHHHHS--C-CEEEEEESSCCTTCHHHHHHHHTTCCEEEE
T ss_pred EEecCCHHHHHHHhcc--CCCCEEEEeCCCCCCCHHHHHHHHHhcC--C-ceEEEEecCCccchHHHHHHHHcCcCEEEe
Confidence 4479999999999998 7899999999999999999999999875 5 8999999877654 677999999999999
Q ss_pred CCCC---------HHHHHHHHHHHHHhc
Q 044790 81 KPIR---------KNELQNLWQHVWRKC 99 (162)
Q Consensus 81 KP~~---------~~~L~~~i~~~l~~~ 99 (162)
||++ .++|..+|++++...
T Consensus 129 KP~~~~~l~~r~~~~~l~~~i~~~~~~~ 156 (164)
T 3t8y_A 129 KPHGSISLTFRQVAPELLEKIRQAMNVD 156 (164)
T ss_dssp CSSSSSCGGGGGGHHHHHHHHHHHTTSC
T ss_pred CCCCHHHHHHHhhhHHHHHHHHHHhCCC
Confidence 9999 678888887776653
No 93
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=99.70 E-value=4.1e-17 Score=122.49 Aligned_cols=95 Identities=23% Similarity=0.430 Sum_probs=88.0
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|+|..+.++.+|++.+.. ..||+||+|+.||+++|+++++.|+.. +.+|||++|+..+......++..|+++||.
T Consensus 30 ~~v~~~~~~~~al~~l~~--~~~dlvilD~~l~~~~g~~~~~~lr~~---~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~ 104 (238)
T 2gwr_A 30 FDTAVIGDGTQALTAVRE--LRPDLVLLDLMLPGMNGIDVCRVLRAD---SGVPIVMLTAKTDTVDVVLGLESGADDYIM 104 (238)
T ss_dssp CEEEEECCGGGHHHHHHH--HCCSEEEEESSCSSSCHHHHHHHHHTT---CCCCEEEEEETTCCSCHHHHHHTTCCEEEE
T ss_pred CEEEEECCHHHHHHHHHh--CCCCEEEEeCCCCCCCHHHHHHHHHhC---CCCcEEEEeCCCCHHHHHHHHHCCCCEEEe
Confidence 578899999999999988 789999999999999999999999975 379999999999988899999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcc
Q 044790 81 KPIRKNELQNLWQHVWRKCH 100 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l~~~~ 100 (162)
||++.++|..+|+.++++..
T Consensus 105 Kp~~~~~L~~~i~~~~~~~~ 124 (238)
T 2gwr_A 105 KPFKPKELVARVRARLRRND 124 (238)
T ss_dssp ESCCHHHHHHHHHHHCCCCS
T ss_pred CCCCHHHHHHHHHHHHhhcc
Confidence 99999999999999887653
No 94
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=99.70 E-value=5.9e-17 Score=112.35 Aligned_cols=84 Identities=24% Similarity=0.319 Sum_probs=69.6
Q ss_pred EEEEcCHHHHHHHHHhhCC-CccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEec--CCCHHHHHHHHHcCCceEE
Q 044790 3 VIAVENGLQAWKILEDLMD-QIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSS--HDSMSIVFKCLSKGAVYFL 79 (162)
Q Consensus 3 v~~a~~~~eal~~l~~~~~-~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~--~~~~~~~~~a~~~Ga~~~l 79 (162)
|..+.++.+|++.+.. . .||+||+|+.||+++|++++++||+.. + +|+|+++. ....+...++++.|+++||
T Consensus 42 v~~~~~~~~al~~l~~--~~~~dlvilD~~l~~~~g~~~~~~lr~~~--~-~~iiil~~~~~~~~~~~~~~~~~ga~~~l 116 (145)
T 3kyj_B 42 VAQAANGQEALDKLAA--QPNVDLILLDIEMPVMDGMEFLRHAKLKT--R-AKICMLSSVAVSGSPHAARARELGADGVV 116 (145)
T ss_dssp EEEESSHHHHHHHHHH--CTTCCEEEECTTSCCCTTCHHHHHHHHHC--C-CEEC-CBSSCSTTSSHHHHHHHTTCSCCC
T ss_pred EEEECCHHHHHHHHhc--CCCCCEEEEeCCCCCCCHHHHHHHHHhcC--C-CCeEEEEEeccCChHHHHHHHhCCCCEEE
Confidence 3489999999999998 7 899999999999999999999999865 3 89999987 5566778899999999999
Q ss_pred eCCCCHHHHHHH
Q 044790 80 VKPIRKNELQNL 91 (162)
Q Consensus 80 ~KP~~~~~L~~~ 91 (162)
.||++.++|..+
T Consensus 117 ~KP~~~~~l~~~ 128 (145)
T 3kyj_B 117 AKPSGTVSHDLE 128 (145)
T ss_dssp BCCCSCC-----
T ss_pred eCCCCHHHHHHH
Confidence 999995444333
No 95
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=99.70 E-value=1.1e-16 Score=111.93 Aligned_cols=98 Identities=20% Similarity=0.195 Sum_probs=78.4
Q ss_pred EEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeC
Q 044790 2 AVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVK 81 (162)
Q Consensus 2 ~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~K 81 (162)
.|..+.++.++++.+... ..||+||+|+.||+++|+++++.|++.. +.+|||++|+....+....++..|+++||.|
T Consensus 31 ~v~~~~~~~~a~~~l~~~-~~~dlvi~d~~l~~~~g~~~~~~l~~~~--~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~k 107 (154)
T 2qsj_A 31 RVEGAETVSDALAFLEAD-NTVDLILLDVNLPDAEAIDGLVRLKRFD--PSNAVALISGETDHELIRAALEAGADGFIPK 107 (154)
T ss_dssp EEEEESSHHHHHHHHHTT-CCCSEEEECC------CHHHHHHHHHHC--TTSEEEEC-----CHHHHHHHHTTCCBBCCT
T ss_pred EEEEecCHHHHHHHHhcc-CCCCEEEEeCCCCCCchHHHHHHHHHhC--CCCeEEEEeCCCCHHHHHHHHHccCCEEEeC
Confidence 577899999999999762 4699999999999999999999999875 7899999999988899999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhccCC
Q 044790 82 PIRKNELQNLWQHVWRKCHSS 102 (162)
Q Consensus 82 P~~~~~L~~~i~~~l~~~~~~ 102 (162)
|++.++|..+|+.++++....
T Consensus 108 p~~~~~L~~~l~~~~~~~~~~ 128 (154)
T 2qsj_A 108 SADPQVLIHAVSLILEGEIFL 128 (154)
T ss_dssp TSCHHHHHHHHHHHHTTCCBC
T ss_pred CCCHHHHHHHHHHHHcCCEEc
Confidence 999999999999998876543
No 96
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=99.69 E-value=9.7e-18 Score=124.92 Aligned_cols=93 Identities=4% Similarity=-0.099 Sum_probs=81.7
Q ss_pred EEcCHHHHHHH-HHhhCCCccEEEEcCCCCCCCHHHHHHHHHc-cCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCC
Q 044790 5 AVENGLQAWKI-LEDLMDQIDLVLTEVLMPCLSGIGLLRKIMN-HKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKP 82 (162)
Q Consensus 5 ~a~~~~eal~~-l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~-~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP 82 (162)
.+.++.+++.. +.. ..||+||+|+.||+++|++++++||+ .. +.+|||++|+..+......++..|+++||.||
T Consensus 38 ~~~~~~~~~~~~~~~--~~~dlvllD~~mp~~~G~~~~~~lr~~~~--~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp 113 (225)
T 3klo_A 38 TPFSELWLEENKPES--RSIQMLVIDYSRISDDVLTDYSSFKHISC--PDAKEVIINCPQDIEHKLLFKWNNLAGVFYID 113 (225)
T ss_dssp ECGGGHHHHTTCSGG--GGCCEEEEEGGGCCHHHHHHHHHHHHHHC--TTCEEEEEEECTTCCHHHHTTSTTEEEEEETT
T ss_pred EeCCcHHHHHHHhhc--cCCCEEEEeCCCCCCCHHHHHHHHHHhhC--CCCcEEEEECCcchhHHHHHHHhCCCEEEecC
Confidence 34566666654 566 78999999999999999999999998 55 79999999999998899999999999999999
Q ss_pred CCHHHHHHHHHHHHHhccC
Q 044790 83 IRKNELQNLWQHVWRKCHS 101 (162)
Q Consensus 83 ~~~~~L~~~i~~~l~~~~~ 101 (162)
++.++|..+|+.++++...
T Consensus 114 ~~~~~L~~~i~~~~~~~~~ 132 (225)
T 3klo_A 114 DDMDTLIKGMSKILQDEMW 132 (225)
T ss_dssp CCHHHHHHHHHHHHTTCCB
T ss_pred CCHHHHHHHHHHHHCCCEe
Confidence 9999999999999987644
No 97
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=99.69 E-value=9.8e-17 Score=110.62 Aligned_cols=97 Identities=20% Similarity=0.338 Sum_probs=79.5
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccC---CCCCCcEEEEecCCCHHHHHHHHHcCCce
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHK---TCKNIPVIMMSSHDSMSIVFKCLSKGAVY 77 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~---~~~~~piI~lt~~~~~~~~~~a~~~Ga~~ 77 (162)
|.|..+.++.++++.+.. ..||+||+|+.||+++|+++++.|++.. ..+.+|||++++........ ..|+++
T Consensus 35 ~~v~~~~~~~~al~~l~~--~~~dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~~~~ii~~s~~~~~~~~~---~~g~~~ 109 (140)
T 3c97_A 35 NDITVVTNGLQALQAYQN--RQFDVIIMDIQMPVMDGLEAVSEIRNYERTHNTKRASIIAITADTIDDDRP---GAELDE 109 (140)
T ss_dssp SEEEEESSHHHHHHHHHH--SCCSEEEECTTCCSSCHHHHHHHHHHHHHHHTCCCCCCEEEESSCCSCCCC---CSSCSE
T ss_pred CceEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCcHHHHHHHHHhhhhhcCCCceEEEEEeCccchhHHH---hCChhh
Confidence 468889999999999998 8899999999999999999999998641 12678999999866544332 789999
Q ss_pred EEeCCCCHHHHHHHHHHHHHhccCC
Q 044790 78 FLVKPIRKNELQNLWQHVWRKCHSS 102 (162)
Q Consensus 78 ~l~KP~~~~~L~~~i~~~l~~~~~~ 102 (162)
||.||++.++|..+|+.++.+....
T Consensus 110 ~l~KP~~~~~L~~~i~~~~~~~~~~ 134 (140)
T 3c97_A 110 YVSKPLNPNQLRDVVLTCHSEGAEG 134 (140)
T ss_dssp EEESSCCHHHHHHHHHHHHC-----
T ss_pred eEeCCCCHHHHHHHHHHHhCCCCCC
Confidence 9999999999999999998765443
No 98
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=99.69 E-value=2.2e-16 Score=116.81 Aligned_cols=93 Identities=19% Similarity=0.245 Sum_probs=85.8
Q ss_pred EEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeC
Q 044790 2 AVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVK 81 (162)
Q Consensus 2 ~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~K 81 (162)
.|..+.++.++++.+ ..||+||+|+.||+++|+++++.|+... +.+|||++|+..+......++..|+++||.|
T Consensus 27 ~v~~~~~~~~al~~~----~~~dlvllD~~lp~~~g~~~~~~lr~~~--~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~K 100 (220)
T 1p2f_A 27 RVKTFLTGEDFLNDE----EAFHVVVLDVMLPDYSGYEICRMIKETR--PETWVILLTLLSDDESVLKGFEAGADDYVTK 100 (220)
T ss_dssp EEEEESSHHHHHHCC----SCCSEEEEESBCSSSBHHHHHHHHHHHC--TTSEEEEEESCCSHHHHHHHHHHTCSEEEES
T ss_pred CEEEECCHHHHHHhc----CCCCEEEEeCCCCCCCHHHHHHHHHhcC--CCCcEEEEEcCCCHHHHHHHHHcCCCEEEEC
Confidence 467899999999876 3699999999999999999999999876 7899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcc
Q 044790 82 PIRKNELQNLWQHVWRKCH 100 (162)
Q Consensus 82 P~~~~~L~~~i~~~l~~~~ 100 (162)
|++.++|..+|+.++++..
T Consensus 101 p~~~~~L~~~i~~~~~~~~ 119 (220)
T 1p2f_A 101 PFNPEILLARVKRFLEREK 119 (220)
T ss_dssp SCCHHHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHcccc
Confidence 9999999999999998754
No 99
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=99.69 E-value=6.8e-17 Score=107.11 Aligned_cols=91 Identities=22% Similarity=0.223 Sum_probs=82.5
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|+|..+.++.++++.+.. ..||+||+|+.+|+++|+++++.|++....+.+|||+++...... .++..|+++||.
T Consensus 26 ~~v~~~~~~~~~~~~l~~--~~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~~~~~---~~~~~g~~~~l~ 100 (119)
T 2j48_A 26 FKVIWLVDGSTALDQLDL--LQPIVILMAWPPPDQSCLLLLQHLREHQADPHPPLVLFLGEPPVD---PLLTAQASAILS 100 (119)
T ss_dssp CEEEEESCHHHHHHHHHH--HCCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCEEEESSCCSS---HHHHHHCSEECS
T ss_pred cEEEEecCHHHHHHHHHh--cCCCEEEEecCCCCCCHHHHHHHHHhccccCCCCEEEEeCCCCch---hhhhcCHHHhcc
Confidence 578899999999999998 789999999999999999999999987545789999999987766 889999999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 044790 81 KPIRKNELQNLWQHVW 96 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l 96 (162)
||++.++|...|+.++
T Consensus 101 kp~~~~~l~~~l~~~~ 116 (119)
T 2j48_A 101 KPLDPQLLLTTLQGLC 116 (119)
T ss_dssp SCSTTHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998654
No 100
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=99.68 E-value=5.6e-17 Score=130.95 Aligned_cols=97 Identities=22% Similarity=0.330 Sum_probs=85.0
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCH-----HHHHHHHHcCC
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSM-----SIVFKCLSKGA 75 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~-----~~~~~a~~~Ga 75 (162)
|+|..+.++.+|++.+... ..||+||+|+.||+++|++++++||... +.++||++|+.... ....+++..|+
T Consensus 29 ~~v~~a~~g~eal~~l~~~-~~~DlvllDi~mP~~dG~ell~~l~~~~--~~~~ii~~s~~~~~~~~~~~~~~~a~~~ga 105 (400)
T 3sy8_A 29 GSILEAADGKEAVAILESC-GHVDIAICDLQMSGMDGLAFLRHASLSG--KVHSVILSSEVDPILRQATISMIECLGLNF 105 (400)
T ss_dssp EEEEEESSHHHHHHHHHHH-SCEEEEEECSSCSSSCHHHHHHHHHHHT--CEEEEEESCCCCGGGHHHHHHHHHTTTCEE
T ss_pred cEEEEecCHHHHHHHHhhC-CCCCEEEEeCCCCCCCHHHHHHHHHhcC--CCceEEEEcCchHHHHHHHHHHHHHcCCee
Confidence 4678999999999999872 3799999999999999999999999876 67778877777665 56778899999
Q ss_pred ceEEeCCCCHHHHHHHHHHHHHhcc
Q 044790 76 VYFLVKPIRKNELQNLWQHVWRKCH 100 (162)
Q Consensus 76 ~~~l~KP~~~~~L~~~i~~~l~~~~ 100 (162)
++||.||++.++|...|++++....
T Consensus 106 ~~yl~KP~~~~~L~~~i~~~~~~~~ 130 (400)
T 3sy8_A 106 LGDLGKPFSLERITALLTRYNARRQ 130 (400)
T ss_dssp EEECCSSCCHHHHHHHHHHHHHHTT
T ss_pred ccCcCCCcCHHHHHHHHHHHHHhhh
Confidence 9999999999999999999988754
No 101
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=99.68 E-value=1.3e-18 Score=117.02 Aligned_cols=95 Identities=25% Similarity=0.485 Sum_probs=86.8
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|.|..+.++.++++.+.. ..||+||+|+.||+++|+++++.|++.. +.+|||++|+..+......++..|+++|+.
T Consensus 28 ~~v~~~~~~~~~~~~~~~--~~~dlvi~d~~~~~~~g~~~~~~l~~~~--~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~ 103 (124)
T 1dc7_A 28 LTCTTFENGNEVLAALAS--KTPDVLLSDIRMPGMDGLALLKQIKQRH--PMLPVIIMTAHSDLDAAVSAYQQGAFDYLP 103 (124)
T ss_dssp CCCEECCCTTHHHHHSSS--CCCSCEEECSCSSHHHHCSTHHHHHHHC--TTSCCCCBCCSTTSTTTTSSCTTCCCCCBC
T ss_pred cEEEEeCCHHHHHHHHhc--CCCCEEEEeeecCCCCHHHHHHHHHhhC--CCCCEEEEecCCCHHHHHHHHhcCcceEee
Confidence 457788999999999987 7899999999999999999999999865 789999999988888888999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhc
Q 044790 81 KPIRKNELQNLWQHVWRKC 99 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l~~~ 99 (162)
||++.++|..+|+.+++++
T Consensus 104 kp~~~~~l~~~i~~~~~~~ 122 (124)
T 1dc7_A 104 KPFDIDEAVALVERAISHY 122 (124)
T ss_dssp SSCCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhh
Confidence 9999999999999988764
No 102
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=99.66 E-value=1.3e-15 Score=104.47 Aligned_cols=90 Identities=16% Similarity=0.191 Sum_probs=82.7
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCC-CCcEEEEecCCCHHHHHHHHHcCCceEE
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCK-NIPVIMMSSHDSMSIVFKCLSKGAVYFL 79 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~-~~piI~lt~~~~~~~~~~a~~~Ga~~~l 79 (162)
|+|..+.++.++++.+.. ..||+|| ||+++|+++++.|+.. + .+|||++++..+......++..|+++||
T Consensus 43 ~~v~~~~~~~~al~~l~~--~~~dlvi----~~~~~g~~~~~~l~~~---~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l 113 (137)
T 2pln_A 43 FMADVTESLEDGEYLMDI--RNYDLVM----VSDKNALSFVSRIKEK---HSSIVVLVSSDNPTSEEEVHAFEQGADDYI 113 (137)
T ss_dssp CEEEEESCHHHHHHHHHH--SCCSEEE----ECSTTHHHHHHHHHHH---STTSEEEEEESSCCHHHHHHHHHTTCSEEE
T ss_pred cEEEEeCCHHHHHHHHHc--CCCCEEE----EcCccHHHHHHHHHhc---CCCccEEEEeCCCCHHHHHHHHHcCCceee
Confidence 578899999999999998 8899999 8999999999999986 5 8999999999999999999999999999
Q ss_pred eCCC-CHHHHHHHHHHHHHhc
Q 044790 80 VKPI-RKNELQNLWQHVWRKC 99 (162)
Q Consensus 80 ~KP~-~~~~L~~~i~~~l~~~ 99 (162)
.||+ +.++|..+|+.++++.
T Consensus 114 ~kP~~~~~~l~~~i~~~~~~~ 134 (137)
T 2pln_A 114 AKPYRSIKALVARIEARLRFW 134 (137)
T ss_dssp ESSCSCHHHHHHHHHHHTC--
T ss_pred eCCCCCHHHHHHHHHHHHhhh
Confidence 9999 9999999999887654
No 103
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=99.63 E-value=5.1e-16 Score=113.05 Aligned_cols=90 Identities=10% Similarity=0.128 Sum_probs=78.2
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|.|..+.++.+++ . ..||+||+|+.||+++|+ +++.++... +.+|||++|+..+.+....+++.|+++||.
T Consensus 37 ~~v~~~~~~~~al----~--~~~dlvl~D~~mp~~~g~-l~~~~~~~~--~~~~ii~lt~~~~~~~~~~a~~~ga~~~l~ 107 (196)
T 1qo0_D 37 CSVRQCWPPPEAF----D--VPVDVVFTSIFQNRHHDE-IAALLAAGT--PRTTLVALVEYESPAVLSQIIELECHGVIT 107 (196)
T ss_dssp CEEEEECSCCSSC----S--SCCSEEEEECCSSTHHHH-HHHHHHHSC--TTCEEEEEECCCSHHHHHHHHHHTCSEEEE
T ss_pred CeEEEecCchhhC----C--CCCCEEEEeCCCCccchH-HHHHHhccC--CCCCEEEEEcCCChHHHHHHHHcCCCeeEe
Confidence 4566666666655 3 579999999999999998 999998764 789999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhc
Q 044790 81 KPIRKNELQNLWQHVWRKC 99 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l~~~ 99 (162)
||++.++|...|+.++.+.
T Consensus 108 KP~~~~~L~~~l~~~~~~~ 126 (196)
T 1qo0_D 108 QPLDAHRVLPVLVSARRIS 126 (196)
T ss_dssp SSCCGGGHHHHHHHHHHHH
T ss_pred cCcCHHHHHHHHHHHHHHH
Confidence 9999999999999887654
No 104
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=99.63 E-value=2.4e-15 Score=111.40 Aligned_cols=91 Identities=15% Similarity=0.189 Sum_probs=84.5
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|+|..+.++.+|++.+.. ..||+|| ||+++|+++++.|++.+ ..+|||++|+..+......++..|+++||.
T Consensus 25 ~~v~~~~~~~~al~~l~~--~~~dlvi----lp~~~g~~~~~~lr~~~--~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~ 96 (223)
T 2hqr_A 25 FMADVTESLEDGEYLMDI--RNYDLVM----VSDKNALSFVSRIKEKH--SSIVVLVSSDNPTSEEEVHAFEQGADDYIA 96 (223)
T ss_dssp CCEEEESSHHHHHHHHTT--SCCSEEE----ECCTTHHHHHHHHHHHC--TTSEEEEEESSCCHHHHHHHHHHTCSEEEE
T ss_pred cEEEEECCHHHHHHHHhc--CCCCEEE----eCCCCHHHHHHHHHhCC--CCCcEEEEECCCCHHHHHHHHHcCCCEEEE
Confidence 568899999999999988 8899999 99999999999999862 489999999999999999999999999999
Q ss_pred CCC-CHHHHHHHHHHHHHhc
Q 044790 81 KPI-RKNELQNLWQHVWRKC 99 (162)
Q Consensus 81 KP~-~~~~L~~~i~~~l~~~ 99 (162)
||+ +.++|..+|+.++++.
T Consensus 97 Kp~~~~~~L~~~i~~~~~~~ 116 (223)
T 2hqr_A 97 KPYRSIKALVARIEARLRFW 116 (223)
T ss_dssp TTCSCTHHHHHHHHHHTSSC
T ss_pred CCCCCHHHHHHHHHHHhccc
Confidence 999 9999999999998765
No 105
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=99.61 E-value=5.4e-15 Score=117.75 Aligned_cols=92 Identities=25% Similarity=0.409 Sum_probs=81.3
Q ss_pred EEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCH--HHHHHHHHcCCceEEe
Q 044790 3 VIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSM--SIVFKCLSKGAVYFLV 80 (162)
Q Consensus 3 v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~--~~~~~a~~~Ga~~~l~ 80 (162)
|..+.++.+|++.+.. ..||+||+|+.||+++|++++++|++.. + +|||++|+.... +...++++.|+++||.
T Consensus 32 v~~a~~~~eAl~~l~~--~~pDlVllDi~mp~~dGlell~~l~~~~--p-~pVIvlS~~~~~~~~~~~~al~~Ga~d~l~ 106 (349)
T 1a2o_A 32 VATAPDPLVARDLIKK--FNPDVLTLDVEMPRMDGLDFLEKLMRLR--P-MPVVMVSSLTGKGSEVTLRALELGAIDFVT 106 (349)
T ss_dssp EEEESSHHHHHHHHHH--HCCSEEEEECCCSSSCHHHHHHHHHHSS--C-CCEEEEECCTHHHHHHHHHHHHHTCCEEEE
T ss_pred EEEeCCHHHHHHHHhc--cCCCEEEEECCCCCCCHHHHHHHHHhcC--C-CcEEEEECCCcccHHHHHHHHhCCceEEEE
Confidence 5689999999999998 7899999999999999999999999865 5 999999987765 4478899999999999
Q ss_pred CCCCH---------HHHHHHHHHHHHhc
Q 044790 81 KPIRK---------NELQNLWQHVWRKC 99 (162)
Q Consensus 81 KP~~~---------~~L~~~i~~~l~~~ 99 (162)
||++. ++|..+|+.+.+..
T Consensus 107 KP~~~~~~~l~~~~~~L~~~I~~~~~~~ 134 (349)
T 1a2o_A 107 KPQLGIREGMLAYSEMIAEKVRTAARAR 134 (349)
T ss_dssp CSSSSCSSCHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCccchhHHHHHHHHHHHHHHHHhhh
Confidence 99984 88888888877654
No 106
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.60 E-value=8.2e-16 Score=133.19 Aligned_cols=96 Identities=15% Similarity=0.172 Sum_probs=88.1
Q ss_pred CEEEEEcCHHHHHHHHHhhCC-CccEEEEcCCCCC----CCHHHHHHHHHccCCCCCCcEEEEecCCC-HHHHHHHHHcC
Q 044790 1 MAVIAVENGLQAWKILEDLMD-QIDLVLTEVLMPC----LSGIGLLRKIMNHKTCKNIPVIMMSSHDS-MSIVFKCLSKG 74 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~-~~DlvllD~~mp~----~~g~~~~~~ir~~~~~~~~piI~lt~~~~-~~~~~~a~~~G 74 (162)
|+|..+.++.+|++.+.. . .||+||+|++||+ ++|++++++||+.. +.+|||++|+... .+....++..|
T Consensus 33 ~~v~~a~~g~~al~~~~~--~~~~d~vilDi~lp~~~~~~~G~~ll~~iR~~~--~~iPIi~lTa~~~~~~d~~~~l~~g 108 (755)
T 2vyc_A 33 VTVIKSTSFDDGFAILSS--NEAIDCLMFSYQMEHPDEHQNVRQLIGKLHERQ--QNVPVFLLGDREKALAAMDRDLLEL 108 (755)
T ss_dssp CEEEEESSHHHHHHHHTT--TCCCSEEEEECCCCSHHHHHHHHHHHHHHHHHS--TTCCEEEEECHHHHHHTCSHHHHHH
T ss_pred CEEEEECCHHHHHHHHhc--CCCCcEEEEeCCCCcccccccHHHHHHHHHHhC--CCCCEEEEecCCcchhhccHhHhhc
Confidence 789999999999999987 6 4999999999999 99999999999976 7899999999776 67778889999
Q ss_pred CceEEeCCCCHHH-HHHHHHHHHHhcc
Q 044790 75 AVYFLVKPIRKNE-LQNLWQHVWRKCH 100 (162)
Q Consensus 75 a~~~l~KP~~~~~-L~~~i~~~l~~~~ 100 (162)
++|||.||++..+ |..+|+..++++.
T Consensus 109 addyi~kpf~~~efl~~ri~a~~rr~~ 135 (755)
T 2vyc_A 109 VDEFAWILEDTADFIAGRAVAAMTRYR 135 (755)
T ss_dssp CSEEEETTTSCHHHHHHHHHHHHHHHH
T ss_pred CCceEeCCCCCHHHHHHHHHHHHHHhh
Confidence 9999999999999 9999999998853
No 107
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=99.57 E-value=2.5e-15 Score=103.13 Aligned_cols=91 Identities=18% Similarity=0.184 Sum_probs=77.1
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEe-cCCCHHHHHHHHHcCCceEE
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMS-SHDSMSIVFKCLSKGAVYFL 79 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt-~~~~~~~~~~a~~~Ga~~~l 79 (162)
|+|..+.++.++++.+... ..||+||+|+.||+++|+++++.||... +.+|||++| +...... .+++ +++||
T Consensus 40 ~~v~~~~~~~~al~~l~~~-~~~dlvilD~~l~~~~g~~~~~~l~~~~--~~~~ii~ls~~~~~~~~-~~~~---~~~~l 112 (138)
T 2b4a_A 40 AEVTVHPSGSAFFQHRSQL-STCDLLIVSDQLVDLSIFSLLDIVKEQT--KQPSVLILTTGRHELIE-SSEH---NLSYL 112 (138)
T ss_dssp CEEEEESSHHHHHHTGGGG-GSCSEEEEETTCTTSCHHHHHHHHTTSS--SCCEEEEEESCC--CCC-CSSS---CEEEE
T ss_pred CEEEEeCCHHHHHHHHHhC-CCCCEEEEeCCCCCCCHHHHHHHHHhhC--CCCCEEEEECCCCCHHH-HHHH---HHhee
Confidence 5788999999999988751 3699999999999999999999999854 789999999 8766655 5555 99999
Q ss_pred eCCCCHHHHHHHHHHHHHh
Q 044790 80 VKPIRKNELQNLWQHVWRK 98 (162)
Q Consensus 80 ~KP~~~~~L~~~i~~~l~~ 98 (162)
.||++.++|..+|+.++++
T Consensus 113 ~KP~~~~~L~~~i~~~~~~ 131 (138)
T 2b4a_A 113 QKPFAISELRAAIDYHKPS 131 (138)
T ss_dssp ESSCCHHHHHHHHHHTCCC
T ss_pred eCCCCHHHHHHHHHHHHHh
Confidence 9999999999999887554
No 108
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.53 E-value=8.8e-15 Score=111.67 Aligned_cols=75 Identities=15% Similarity=0.267 Sum_probs=63.9
Q ss_pred EEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCC
Q 044790 5 AVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIR 84 (162)
Q Consensus 5 ~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~ 84 (162)
.+.++.+++..+.. ..||+||+|+.||+++|++++++||+. .+|||++|+..+.+...++++.||++||.||+.
T Consensus 33 ~~~~~~~~~~~~~~--~~~dlvllD~~mP~~~G~~~~~~lr~~----~~pvi~lt~~~~~~~~~~a~~~Ga~dyl~Kp~~ 106 (259)
T 3luf_A 33 DAFDTLEGARHCQG--DEYVVALVDLTLPDAPSGEAVKVLLER----GLPVVILTADISEDKREAWLEAGVLDYVMKDSR 106 (259)
T ss_dssp EEESSTGGGTTCCT--TTEEEEEEESCBTTBTTSHHHHHHHHT----TCCEEEEECC-CHHHHHHHHHTTCCEEEECSSH
T ss_pred EEeChHHHHHHhhc--CCCcEEEEeCCCCCCCHHHHHHHHHhC----CCCEEEEEccCCHHHHHHHHHCCCcEEEeCCch
Confidence 34455666666655 689999999999999999999999873 589999999999999999999999999999964
Q ss_pred H
Q 044790 85 K 85 (162)
Q Consensus 85 ~ 85 (162)
.
T Consensus 107 ~ 107 (259)
T 3luf_A 107 H 107 (259)
T ss_dssp H
T ss_pred h
Confidence 3
No 109
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=99.51 E-value=1.5e-14 Score=107.54 Aligned_cols=94 Identities=22% Similarity=0.362 Sum_probs=81.4
Q ss_pred EEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeC
Q 044790 2 AVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVK 81 (162)
Q Consensus 2 ~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~K 81 (162)
.|..+.++.++++.+.. ..||+||+|+.||+++|+++++.||+.. +..++++++.....+...++++.|+++|+.|
T Consensus 7 ~v~~~~~~~~a~~~~~~--~~~dlvl~D~~~p~~~g~~~~~~l~~~~--~~~~i~vi~~~~~~~~~~~~~~~Ga~~~l~k 82 (237)
T 3cwo_X 7 IVDDATNGREAVEKYKE--LKPDIVTMDITMPEMNGIDAIKEIMKID--PNAKIIVCSAMGQQAMVIEAIKAGAKDFIVN 82 (237)
T ss_dssp EEECCCSSSTTHHHHHH--HCCSCEEEECCSTTSSHHHHHHHHHHHS--SSCCEEEECCSSTHHHHHHHHHTTCCEEEES
T ss_pred EEEECCCHHHHHHHHHh--cCCCEEEEeCCCCCCCHHHHHHHHHHhC--CCCCEEEEECCCCHHHHHHHHHCCHHheEeC
Confidence 56778899999999998 7899999999999999999999999865 5566777776667888999999999999999
Q ss_pred C--CCHHHHHHHHHHHHHhc
Q 044790 82 P--IRKNELQNLWQHVWRKC 99 (162)
Q Consensus 82 P--~~~~~L~~~i~~~l~~~ 99 (162)
| ++..+|...+...+...
T Consensus 83 p~~~~~~~l~~~i~~~~~~~ 102 (237)
T 3cwo_X 83 TAAVENPSLITQIAQTFGSQ 102 (237)
T ss_dssp HHHHHCTHHHHHHHHHHTGG
T ss_pred CcccChHHHHHHHHHHhCCC
Confidence 9 78889998888876543
No 110
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=99.26 E-value=9.8e-11 Score=95.41 Aligned_cols=95 Identities=19% Similarity=0.280 Sum_probs=81.9
Q ss_pred EEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeC
Q 044790 2 AVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVK 81 (162)
Q Consensus 2 ~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~K 81 (162)
.+....++.+++ .... ..||++++|+.||+|+|+++++.||.......+||+++++.........+++.|+++|+.|
T Consensus 177 ~~~~~~~~~~~~-~~~~--~~~dlil~D~~mp~~dG~~~~~~ir~~~~~~~~pii~lt~~~~~~~~~~~l~~Ga~d~~~k 253 (459)
T 1w25_A 177 RPVIESDPEKAK-ISAG--GPVDLVIVNAAAKNFDGLRFTAALRSEERTRQLPVLAMVDPDDRGRMVKALEIGVNDILSR 253 (459)
T ss_dssp EEEEECCHHHHH-HHHH--SSCSEEEEETTCSSSCHHHHHHHHHTSGGGTTCCEEEEECTTCHHHHHHHHHTTCCEEEES
T ss_pred ceeeccCHHHHh-hhcc--CCCCEEEEecCCCCCcHHHHHHHHHhCccccCCcEEEEcCCCchHHHHHHHhccccccccC
Confidence 345566777775 3345 6799999999999999999999999876667899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhc
Q 044790 82 PIRKNELQNLWQHVWRKC 99 (162)
Q Consensus 82 P~~~~~L~~~i~~~l~~~ 99 (162)
|+...++..++..++...
T Consensus 254 p~~~~~l~~~v~~~~~~~ 271 (459)
T 1w25_A 254 PIDPQELSARVKTQIQRK 271 (459)
T ss_dssp SCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 999999999888877654
No 111
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=97.84 E-value=1.3e-05 Score=69.19 Aligned_cols=93 Identities=12% Similarity=0.104 Sum_probs=70.6
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|+|..+.++++|+..+++. ..+++||+|+.++ +.+++++||... ..+||++++.......+......++++|+.
T Consensus 31 ~~V~~a~s~~Da~~~i~~~-~~i~avIld~d~~---~~~ll~~Ir~~~--~~iPVFl~~~~~~~~~~~~~~~~~~~~~~~ 104 (715)
T 3n75_A 31 FQIVYPNDRDDLLKLIENN-ARLCGVIFDWDKY---NLELCEEISKMN--ENLPLYAFANTYSTLDVSLNDLRLQISFFE 104 (715)
T ss_dssp CEEECCSSHHHHHHHHHHC-TTEEEEEEEHHHH---HHHHHHHHHHHC--TTCEEEEECCTTCCCCGGGTTSCCEEEEEC
T ss_pred cEEEEeCCHHHHHHHHHhC-CCceEEEEecccc---HHHHHHHHHHhC--CCCCEEEEecCCcccccchhhhhccCeEEE
Confidence 6899999999999999982 3599999999986 689999999987 899999999875433322212357899999
Q ss_pred CCC-CHHHHHHHHHHHHHhc
Q 044790 81 KPI-RKNELQNLWQHVWRKC 99 (162)
Q Consensus 81 KP~-~~~~L~~~i~~~l~~~ 99 (162)
+.. +.+.+..+|.+..+++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~y 124 (715)
T 3n75_A 105 YALGAAEDIANKIKQTTDEY 124 (715)
T ss_dssp CCTTCHHHHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHHH
Confidence 875 4455555665555544
No 112
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=97.52 E-value=0.00035 Score=51.00 Aligned_cols=82 Identities=18% Similarity=0.178 Sum_probs=62.0
Q ss_pred CHHHHHHHHHhhCCCccEEEEcC-CCCCCCHH--HHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEE-----
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEV-LMPCLSGI--GLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFL----- 79 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~-~mp~~~g~--~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l----- 79 (162)
+..+.++.+... ...++++.++ .++.+.|+ +++++++.. ..+|||.+++....+...++++.|+++++
T Consensus 131 ~~~~~i~~~~~~-~~~~vli~~~~~~g~~~g~~~~~i~~~~~~---~~~Pvia~~g~~~~~~~~~~~~~G~~~~~vg~a~ 206 (237)
T 3cwo_X 131 LLRDWVVEVEKR-GAGEILLTSIDRDGTKSGYDTEMIRFVRPL---TTLPIIASGGAGKMEHFLEAFLAGADAALAASVF 206 (237)
T ss_dssp EHHHHHHHHHHH-TCSEEEEEETTTTTCCSCCCHHHHHHHGGG---CCSCEEEESCCCSHHHHHHHHHHTCSEEEESHHH
T ss_pred CHHHHHHHHhhc-CCCeEEEEecCCCCccccccHHHHHHHHHh---cCCCEEecCCCCCHHHHHHHHHcCcHHHhhhHHH
Confidence 445566666552 3456888887 66666664 456666544 48999999999999999999999999985
Q ss_pred -eCCCCHHHHHHHHH
Q 044790 80 -VKPIRKNELQNLWQ 93 (162)
Q Consensus 80 -~KP~~~~~L~~~i~ 93 (162)
.+|++..++...++
T Consensus 207 ~~~~~~~~~~~~~l~ 221 (237)
T 3cwo_X 207 HFREIDVRELKEYLK 221 (237)
T ss_dssp HTTSSCHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHH
Confidence 78999999887654
No 113
>3q7r_A Transcriptional regulatory protein; CHXR, receiver domain, transcription factor, OMPR, chlamydia transcription; 1.60A {Chlamydia trachomatis} PDB: 3q7s_A* 3q7t_A
Probab=97.02 E-value=0.0029 Score=41.00 Aligned_cols=69 Identities=20% Similarity=0.281 Sum_probs=56.3
Q ss_pred CccEEEEcCCC-CCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 044790 22 QIDLVLTEVLM-PCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVWRKC 99 (162)
Q Consensus 22 ~~DlvllD~~m-p~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~~ 99 (162)
..|+|+|.+.+ |. .|.+.......-+|++-...+.+.+.+.+..|+- ||..|+.+.-|.++|+..++..
T Consensus 50 ~AdlIfCEYlLLPe--------~ifS~k~~~~~dliVLfD~F~EEa~v~vLd~Ga~-yLlrPIT~kvldAvIraFLrqh 119 (121)
T 3q7r_A 50 SADLVVCEYSLLPR--------EIRSPKSLEGSFVLVLLDFFDEETSVDLLDRGFW-YLIRPITPRILKSAISLFLSQH 119 (121)
T ss_dssp TEEEEEEEGGGSCT--------TCCCCTTCCSCEEEEEESSCCHHHHHHHHHTTCE-EEESCCCHHHHHHHHHHHHHHC
T ss_pred cceeEEEeeecChH--------HhcCCCCCCcccEEEEehhhchHHHHHHHhCCce-eEeccCcHHHHHHHHHHHHhcc
Confidence 45899998754 43 3444444456678888888999999999999999 9999999999999999999864
No 114
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=95.12 E-value=0.13 Score=38.71 Aligned_cols=80 Identities=16% Similarity=0.185 Sum_probs=54.5
Q ss_pred HHHHHHhhCCCccEEEEcCCCCC--CC--------------------HHHHHHHHHccCCCCCCcEEEEecCCC------
Q 044790 12 AWKILEDLMDQIDLVLTEVLMPC--LS--------------------GIGLLRKIMNHKTCKNIPVIMMSSHDS------ 63 (162)
Q Consensus 12 al~~l~~~~~~~DlvllD~~mp~--~~--------------------g~~~~~~ir~~~~~~~~piI~lt~~~~------ 63 (162)
.++.+.+ ...|+|.+++-..+ .| .+++++.+|+.. +.+|+++++-.+.
T Consensus 36 ~~~~l~~--~G~D~IElG~P~sdP~adgp~i~~a~~~al~~G~~~~~~~~~v~~ir~~~--~~~Pi~~m~y~n~v~~~g~ 111 (262)
T 2ekc_A 36 AFKEVLK--NGTDILEIGFPFSDPVADGPTIQVAHEVALKNGIRFEDVLELSETLRKEF--PDIPFLLMTYYNPIFRIGL 111 (262)
T ss_dssp HHHHHHH--TTCSEEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTSCEEEECCHHHHHHHCH
T ss_pred HHHHHHH--cCCCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhc--CCCCEEEEecCcHHHHhhH
Confidence 3444555 67999999874432 22 345677887652 4799999854331
Q ss_pred HHHHHHHHHcCCceEEeCCCCHHHHHHHHHHH
Q 044790 64 MSIVFKCLSKGAVYFLVKPIRKNELQNLWQHV 95 (162)
Q Consensus 64 ~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~ 95 (162)
...+..+.+.|+++++.-.+..+++...+...
T Consensus 112 ~~f~~~~~~aG~dgvii~dl~~ee~~~~~~~~ 143 (262)
T 2ekc_A 112 EKFCRLSREKGIDGFIVPDLPPEEAEELKAVM 143 (262)
T ss_dssp HHHHHHHHHTTCCEEECTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEECCCCHHHHHHHHHHH
Confidence 35567788999999999888887766555443
No 115
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=95.05 E-value=0.39 Score=33.43 Aligned_cols=89 Identities=13% Similarity=0.104 Sum_probs=60.3
Q ss_pred cCHHHHHHHHHhhCCCccEEEEcCCCCC-C-CHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCC
Q 044790 7 ENGLQAWKILEDLMDQIDLVLTEVLMPC-L-SGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIR 84 (162)
Q Consensus 7 ~~~~eal~~l~~~~~~~DlvllD~~mp~-~-~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~ 84 (162)
...++.++.+.+ ..+|+|.+...+.. + .--++++.||+.. .++++|++ .+.........+.+.|++.++..--+
T Consensus 56 ~p~e~lv~aa~~--~~~diV~lS~~~~~~~~~~~~~i~~L~~~g-~~~i~v~v-GG~~~~~~~~~l~~~G~d~v~~~~~~ 131 (161)
T 2yxb_A 56 QTPEQVAMAAVQ--EDVDVIGVSILNGAHLHLMKRLMAKLRELG-ADDIPVVL-GGTIPIPDLEPLRSLGIREIFLPGTS 131 (161)
T ss_dssp CCHHHHHHHHHH--TTCSEEEEEESSSCHHHHHHHHHHHHHHTT-CTTSCEEE-EECCCHHHHHHHHHTTCCEEECTTCC
T ss_pred CCHHHHHHHHHh--cCCCEEEEEeechhhHHHHHHHHHHHHhcC-CCCCEEEE-eCCCchhcHHHHHHCCCcEEECCCCC
Confidence 467788888888 89999999887753 1 1234567777643 13566664 44444545556678999987766556
Q ss_pred HHHHHHHHHHHHHhc
Q 044790 85 KNELQNLWQHVWRKC 99 (162)
Q Consensus 85 ~~~L~~~i~~~l~~~ 99 (162)
..+....++.++...
T Consensus 132 ~~~~~~~~~~~~~~~ 146 (161)
T 2yxb_A 132 LGEIIEKVRKLAEEK 146 (161)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 677777777777654
No 116
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=94.39 E-value=0.19 Score=37.91 Aligned_cols=80 Identities=19% Similarity=0.196 Sum_probs=54.5
Q ss_pred HHHHHHhhCCCccEEEEcCCC--CCCC--------------------HHHHHHHHHccCCCCCCcEEEEecCC------C
Q 044790 12 AWKILEDLMDQIDLVLTEVLM--PCLS--------------------GIGLLRKIMNHKTCKNIPVIMMSSHD------S 63 (162)
Q Consensus 12 al~~l~~~~~~~DlvllD~~m--p~~~--------------------g~~~~~~ir~~~~~~~~piI~lt~~~------~ 63 (162)
.++.+.+ ...|+|-+++-. |-+| ++++++.||+.. ..+||++++-.+ .
T Consensus 36 ~~~~l~~--~GaD~ieig~P~sdp~~DG~~i~~a~~~al~~G~~~~~~~~~v~~ir~~~--~~~Pv~lm~y~n~v~~~g~ 111 (268)
T 1qop_A 36 IIDTLID--AGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKH--PTIPIGLLMYANLVFNNGI 111 (268)
T ss_dssp HHHHHHH--TTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--SSSCEEEEECHHHHHTTCH
T ss_pred HHHHHHH--CCCCEEEECCCCCCccCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--CCCCEEEEEcccHHHHhhH
Confidence 3445555 679999999844 3233 346678887752 468998876322 1
Q ss_pred HHHHHHHHHcCCceEEeCCCCHHHHHHHHHHH
Q 044790 64 MSIVFKCLSKGAVYFLVKPIRKNELQNLWQHV 95 (162)
Q Consensus 64 ~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~ 95 (162)
...+..+.+.|+++++.-....+++...+..+
T Consensus 112 ~~~~~~~~~aGadgii~~d~~~e~~~~~~~~~ 143 (268)
T 1qop_A 112 DAFYARCEQVGVDSVLVADVPVEESAPFRQAA 143 (268)
T ss_dssp HHHHHHHHHHTCCEEEETTCCGGGCHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHH
Confidence 46778899999999999888877665555443
No 117
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=94.12 E-value=0.93 Score=33.75 Aligned_cols=88 Identities=14% Similarity=0.118 Sum_probs=62.1
Q ss_pred EEcCHHHHHHHHHhhCCCccEEEEcCCCCC-------CCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCce
Q 044790 5 AVENGLQAWKILEDLMDQIDLVLTEVLMPC-------LSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVY 77 (162)
Q Consensus 5 ~a~~~~eal~~l~~~~~~~DlvllD~~mp~-------~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~ 77 (162)
.+.+..|+.+... ..+|.|.+.-..|. .-|++.+++++... ...+||+.+.+- ..+.+.+++..|+++
T Consensus 141 S~ht~~Ea~~A~~---~GaDyI~vgpvf~T~tK~~~~~~gl~~l~~~~~~~-~~~iPvvAiGGI-~~~ni~~~~~aGa~g 215 (243)
T 3o63_A 141 STHDPDQVAAAAA---GDADYFCVGPCWPTPTKPGRAAPGLGLVRVAAELG-GDDKPWFAIGGI-NAQRLPAVLDAGARR 215 (243)
T ss_dssp EECSHHHHHHHHH---SSCSEEEECCSSCCCC-----CCCHHHHHHHHTC----CCCEEEESSC-CTTTHHHHHHTTCCC
T ss_pred eCCCHHHHHHHhh---CCCCEEEEcCccCCCCCCCcchhhHHHHHHHHHhc-cCCCCEEEecCC-CHHHHHHHHHcCCCE
Confidence 5788888776555 47899998654332 24688888887641 137999999887 677788999999999
Q ss_pred EEe-----CCCCHHHHHHHHHHHHH
Q 044790 78 FLV-----KPIRKNELQNLWQHVWR 97 (162)
Q Consensus 78 ~l~-----KP~~~~~L~~~i~~~l~ 97 (162)
+.. +.-++.+-...+...+.
T Consensus 216 vav~sai~~a~dp~~a~~~l~~~~~ 240 (243)
T 3o63_A 216 IVVVRAITSADDPRAAAEQLRSALT 240 (243)
T ss_dssp EEESHHHHTCSSHHHHHHHHHHHHH
T ss_pred EEEeHHHhCCCCHHHHHHHHHHHHH
Confidence 864 55566666666665544
No 118
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=94.08 E-value=0.18 Score=38.27 Aligned_cols=81 Identities=15% Similarity=0.222 Sum_probs=55.9
Q ss_pred HHHHHHHHhhCCCccEEEEcCCC--CCCCH--------------------HHHHHHHHccCCCCCCcEEEEecCCC----
Q 044790 10 LQAWKILEDLMDQIDLVLTEVLM--PCLSG--------------------IGLLRKIMNHKTCKNIPVIMMSSHDS---- 63 (162)
Q Consensus 10 ~eal~~l~~~~~~~DlvllD~~m--p~~~g--------------------~~~~~~ir~~~~~~~~piI~lt~~~~---- 63 (162)
.+.++.+.+ ...|+|=+++-- |-+|| +++++.+|+.. ..+||++++-.+.
T Consensus 35 ~~~~~~l~~--~GaD~iElgiPfSDP~aDGp~Iq~a~~~AL~~G~~~~~~~~~v~~ir~~~--~~~Pivlm~Y~npv~~~ 110 (267)
T 3vnd_A 35 LKIIQTLVD--NGADALELGFPFSDPLADGPVIQGANLRSLAAGTTSSDCFDIITKVRAQH--PDMPIGLLLYANLVFAN 110 (267)
T ss_dssp HHHHHHHHH--TTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCCEEEEECHHHHHHH
T ss_pred HHHHHHHHH--cCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--CCCCEEEEecCcHHHHh
Confidence 344555666 679999998632 33443 56677777653 5789999975332
Q ss_pred --HHHHHHHHHcCCceEEeCCCCHHHHHHHHHH
Q 044790 64 --MSIVFKCLSKGAVYFLVKPIRKNELQNLWQH 94 (162)
Q Consensus 64 --~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~ 94 (162)
...+.++.++|++++|.-....++....+..
T Consensus 111 g~e~f~~~~~~aGvdgvii~Dlp~ee~~~~~~~ 143 (267)
T 3vnd_A 111 GIDEFYTKAQAAGVDSVLIADVPVEESAPFSKA 143 (267)
T ss_dssp CHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHH
T ss_pred hHHHHHHHHHHcCCCEEEeCCCCHhhHHHHHHH
Confidence 5568889999999999987877775554443
No 119
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=93.89 E-value=0.54 Score=34.66 Aligned_cols=71 Identities=11% Similarity=0.150 Sum_probs=53.7
Q ss_pred EEEcCHHHHHHHHHhhCCCccEEEEcCC------CCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCce
Q 044790 4 IAVENGLQAWKILEDLMDQIDLVLTEVL------MPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVY 77 (162)
Q Consensus 4 ~~a~~~~eal~~l~~~~~~~DlvllD~~------mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~ 77 (162)
..+++.+++....+ ..+|+|.+... .+...+++++++++.. .+|||.-..-...+.+.++++.|+++
T Consensus 134 ~~v~t~eea~~a~~---~Gad~Ig~~~~g~t~~~~~~~~~~~li~~l~~~----~ipvIA~GGI~t~~d~~~~~~~Gadg 206 (229)
T 3q58_A 134 ADCSTVNEGISCHQ---KGIEFIGTTLSGYTGPITPVEPDLAMVTQLSHA----GCRVIAEGRYNTPALAANAIEHGAWA 206 (229)
T ss_dssp EECSSHHHHHHHHH---TTCSEEECTTTTSSSSCCCSSCCHHHHHHHHTT----TCCEEEESSCCSHHHHHHHHHTTCSE
T ss_pred EecCCHHHHHHHHh---CCCCEEEecCccCCCCCcCCCCCHHHHHHHHHc----CCCEEEECCCCCHHHHHHHHHcCCCE
Confidence 35678888876655 47899964321 2334568889998762 78999999888899999999999999
Q ss_pred EEeC
Q 044790 78 FLVK 81 (162)
Q Consensus 78 ~l~K 81 (162)
++.=
T Consensus 207 V~VG 210 (229)
T 3q58_A 207 VTVG 210 (229)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9753
No 120
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=93.85 E-value=0.29 Score=36.14 Aligned_cols=73 Identities=12% Similarity=0.206 Sum_probs=49.7
Q ss_pred HHHHHHhhCCCccEEEEcC--CCCCCCH--------------------HHHHHHHHccCCCCCCcEEEEecCCC------
Q 044790 12 AWKILEDLMDQIDLVLTEV--LMPCLSG--------------------IGLLRKIMNHKTCKNIPVIMMSSHDS------ 63 (162)
Q Consensus 12 al~~l~~~~~~~DlvllD~--~mp~~~g--------------------~~~~~~ir~~~~~~~~piI~lt~~~~------ 63 (162)
.++.+.+ . .|.|-+++ .-|.+|| +++++.||+. ..+||++++....
T Consensus 24 ~a~~~~~--~-ad~iel~~p~sdp~~DG~~~~~~~~~al~~g~~~~~~~~~i~~i~~~---~~~pv~~~~~~~~~~~~~~ 97 (248)
T 1geq_A 24 FLLALDE--Y-AGAIELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRH---SSTPIVLMTYYNPIYRAGV 97 (248)
T ss_dssp HHHHHGG--G-BSCEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHTT---CCCCEEEEECHHHHHHHCH
T ss_pred HHHHHHH--c-CCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhh---CCCCEEEEeccchhhhcCH
Confidence 3444555 6 89998884 2345554 6677888765 3678888874333
Q ss_pred HHHHHHHHHcCCceEEeCCCCHHHHHH
Q 044790 64 MSIVFKCLSKGAVYFLVKPIRKNELQN 90 (162)
Q Consensus 64 ~~~~~~a~~~Ga~~~l~KP~~~~~L~~ 90 (162)
.+.+..+++.|++.++.-....++...
T Consensus 98 ~~~~~~~~~~Gad~v~~~~~~~~~~~~ 124 (248)
T 1geq_A 98 RNFLAEAKASGVDGILVVDLPVFHAKE 124 (248)
T ss_dssp HHHHHHHHHHTCCEEEETTCCGGGHHH
T ss_pred HHHHHHHHHCCCCEEEECCCChhhHHH
Confidence 467888999999999987655554433
No 121
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1
Probab=93.76 E-value=1 Score=32.05 Aligned_cols=85 Identities=18% Similarity=0.184 Sum_probs=56.9
Q ss_pred EEcCHHHHHHHHHhhCCCccEEEEcCCCCC-------CCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCce
Q 044790 5 AVENGLQAWKILEDLMDQIDLVLTEVLMPC-------LSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVY 77 (162)
Q Consensus 5 ~a~~~~eal~~l~~~~~~~DlvllD~~mp~-------~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~ 77 (162)
.+.+..++.+... ..+|.|+++-..|. ..+++.++.+++. ..+||++..+-. .+.+.++++.|+++
T Consensus 114 ~~~t~~e~~~~~~---~g~d~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~pvia~GGI~-~~nv~~~~~~Ga~g 186 (215)
T 1xi3_A 114 SVYSLEEALEAEK---KGADYLGAGSVFPTKTKEDARVIGLEGLRKIVES---VKIPVVAIGGIN-KDNAREVLKTGVDG 186 (215)
T ss_dssp EESSHHHHHHHHH---HTCSEEEEECSSCC----CCCCCHHHHHHHHHHH---CSSCEEEESSCC-TTTHHHHHTTTCSE
T ss_pred ecCCHHHHHHHHh---cCCCEEEEcCCccCCCCCCCCCcCHHHHHHHHHh---CCCCEEEECCcC-HHHHHHHHHcCCCE
Confidence 3567777765544 46899998754442 3578888888764 378988877766 77788889999999
Q ss_pred EEe-----CCCCHHHHHHHHHHHH
Q 044790 78 FLV-----KPIRKNELQNLWQHVW 96 (162)
Q Consensus 78 ~l~-----KP~~~~~L~~~i~~~l 96 (162)
+.. +.-++.+....+.+.+
T Consensus 187 v~vgs~i~~~~d~~~~~~~~~~~~ 210 (215)
T 1xi3_A 187 IAVISAVMGAEDVRKATEELRKIV 210 (215)
T ss_dssp EEESHHHHTSSSHHHHHHHHHHHH
T ss_pred EEEhHHHhCCCCHHHHHHHHHHHH
Confidence 843 3334444444444433
No 122
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=93.43 E-value=0.86 Score=30.67 Aligned_cols=89 Identities=10% Similarity=-0.081 Sum_probs=59.8
Q ss_pred EEcCHHHHHHHHHhhCCCccEEEEcCCCCCCC--HHHHHHHHHccCCCCCCcEEEEecCC--CHH---HHHHHHHcCCce
Q 044790 5 AVENGLQAWKILEDLMDQIDLVLTEVLMPCLS--GIGLLRKIMNHKTCKNIPVIMMSSHD--SMS---IVFKCLSKGAVY 77 (162)
Q Consensus 5 ~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~--g~~~~~~ir~~~~~~~~piI~lt~~~--~~~---~~~~a~~~Ga~~ 77 (162)
.....++.++.+.+ ..+|+|.+...+.... --++++.|++.. ..+++|++=.... ..+ ....+.+.|++.
T Consensus 39 ~~~p~e~~v~~a~~--~~~d~v~lS~~~~~~~~~~~~~i~~l~~~g-~~~i~v~vGG~~~~~~~~~~~~~~~~~~~G~d~ 115 (137)
T 1ccw_A 39 VLSPQELFIKAAIE--TKADAILVSSLYGQGEIDCKGLRQKCDEAG-LEGILLYVGGNIVVGKQHWPDVEKRFKDMGYDR 115 (137)
T ss_dssp EEECHHHHHHHHHH--HTCSEEEEEECSSTHHHHHTTHHHHHHHTT-CTTCEEEEEESCSSSSCCHHHHHHHHHHTTCSE
T ss_pred CCCCHHHHHHHHHh--cCCCEEEEEecCcCcHHHHHHHHHHHHhcC-CCCCEEEEECCCcCchHhhhhhHHHHHHCCCCE
Confidence 45678889999988 7899999998874321 123567777653 1356665444321 111 244578899999
Q ss_pred EEeCCCCHHHHHHHHHHHH
Q 044790 78 FLVKPIRKNELQNLWQHVW 96 (162)
Q Consensus 78 ~l~KP~~~~~L~~~i~~~l 96 (162)
|+..--+..++...|...+
T Consensus 116 ~~~~g~~~~~~~~~l~~~~ 134 (137)
T 1ccw_A 116 VYAPGTPPEVGIADLKKDL 134 (137)
T ss_dssp ECCTTCCHHHHHHHHHHHH
T ss_pred EECCCCCHHHHHHHHHHHh
Confidence 9977778888888776654
No 123
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=92.99 E-value=0.88 Score=33.56 Aligned_cols=70 Identities=14% Similarity=0.099 Sum_probs=52.7
Q ss_pred EEEcCHHHHHHHHHhhCCCccEEEEcCC------CCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCce
Q 044790 4 IAVENGLQAWKILEDLMDQIDLVLTEVL------MPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVY 77 (162)
Q Consensus 4 ~~a~~~~eal~~l~~~~~~~DlvllD~~------mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~ 77 (162)
..+++.+++....+ ..+|+|..... .+...+++++++++.. .+|||.-..-...+.+.++++.|+++
T Consensus 134 ~~v~t~eea~~a~~---~Gad~Ig~~~~g~t~~~~~~~~~~~~i~~l~~~----~ipvIA~GGI~t~~d~~~~~~~Gadg 206 (232)
T 3igs_A 134 ADCSSVDDGLACQR---LGADIIGTTMSGYTTPDTPEEPDLPLVKALHDA----GCRVIAEGRYNSPALAAEAIRYGAWA 206 (232)
T ss_dssp EECCSHHHHHHHHH---TTCSEEECTTTTSSSSSCCSSCCHHHHHHHHHT----TCCEEEESCCCSHHHHHHHHHTTCSE
T ss_pred EeCCCHHHHHHHHh---CCCCEEEEcCccCCCCCCCCCCCHHHHHHHHhc----CCcEEEECCCCCHHHHHHHHHcCCCE
Confidence 35677888876655 47899864321 1233468889998763 78999998888899999999999999
Q ss_pred EEe
Q 044790 78 FLV 80 (162)
Q Consensus 78 ~l~ 80 (162)
++.
T Consensus 207 V~V 209 (232)
T 3igs_A 207 VTV 209 (232)
T ss_dssp EEE
T ss_pred EEE
Confidence 975
No 124
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1
Probab=92.84 E-value=0.82 Score=34.53 Aligned_cols=86 Identities=13% Similarity=0.093 Sum_probs=61.1
Q ss_pred EEcCHHHHHHHHHhhCCCccEEEEcCCCC-----CCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEE
Q 044790 5 AVENGLQAWKILEDLMDQIDLVLTEVLMP-----CLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFL 79 (162)
Q Consensus 5 ~a~~~~eal~~l~~~~~~~DlvllD~~mp-----~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l 79 (162)
++.+...|-.+ .. -.+++| +.+-.| +..-+++++.|++. ..+|||+=..-..++.+..++++|+++.+
T Consensus 142 ~~dd~~~akrl-~~--~G~~aV-mPlg~pIGsG~Gi~~~~lI~~I~e~---~~vPVI~eGGI~TPsDAa~AmeLGAdgVl 214 (265)
T 1wv2_A 142 TSDDPIIARQL-AE--IGCIAV-MPLAGLIGSGLGICNPYNLRIILEE---AKVPVLVDAGVGTASDAAIAMELGCEAVL 214 (265)
T ss_dssp ECSCHHHHHHH-HH--SCCSEE-EECSSSTTCCCCCSCHHHHHHHHHH---CSSCBEEESCCCSHHHHHHHHHHTCSEEE
T ss_pred eCCCHHHHHHH-HH--hCCCEE-EeCCccCCCCCCcCCHHHHHHHHhc---CCCCEEEeCCCCCHHHHHHHHHcCCCEEE
Confidence 56666666544 44 467877 444332 22337899999884 58999987788899999999999999986
Q ss_pred e-----CCCCHHHHHHHHHHHHH
Q 044790 80 V-----KPIRKNELQNLWQHVWR 97 (162)
Q Consensus 80 ~-----KP~~~~~L~~~i~~~l~ 97 (162)
. |--++..+...+...+.
T Consensus 215 VgSAI~~a~dP~~ma~af~~Av~ 237 (265)
T 1wv2_A 215 MNTAIAHAKDPVMMAEAMKHAIV 237 (265)
T ss_dssp ESHHHHTSSSHHHHHHHHHHHHH
T ss_pred EChHHhCCCCHHHHHHHHHHHHH
Confidence 4 44556777776666544
No 125
>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of homoprotocatechuate; 1.39A {Escherichia coli} PDB: 2vwt_A
Probab=92.65 E-value=2.4 Score=31.86 Aligned_cols=83 Identities=10% Similarity=0.011 Sum_probs=56.9
Q ss_pred HHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceE-EeCCCCHHH
Q 044790 9 GLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYF-LVKPIRKNE 87 (162)
Q Consensus 9 ~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~-l~KP~~~~~ 87 (162)
..+.++.+.. ..+|.|++|++-...+--++...++.... ...++++=+...++..+..+++.|++.+ ++|--+.++
T Consensus 28 ~p~~~e~a~~--~GaD~v~lDlE~~~~~~~~~~~~~~a~~~-~~~~~~VRv~~~~~~~i~~~l~~g~~~I~~P~V~s~ee 104 (267)
T 2vws_A 28 TAYMAEIAAT--SGYDWLLIDGEHAPNTIQDLYHQLQAVAP-YASQPVIRPVEGSKPLIKQVLDIGAQTLLIPMVDTAEQ 104 (267)
T ss_dssp CHHHHHHHHT--TCCSEEEEETTTSCCCHHHHHHHHHHHTT-SSSEEEEECSSCCHHHHHHHHHTTCCEEEECCCCSHHH
T ss_pred CHHHHHHHHh--CCCCEEEEcCCCCCCCHHHHHHHHHHHHh-CCCcEEEEeCCCCHHHHHHHHHhCCCEEEeCCCCCHHH
Confidence 3455666666 78999999998766665555555554322 3566776666677888999999999986 445556777
Q ss_pred HHHHHHH
Q 044790 88 LQNLWQH 94 (162)
Q Consensus 88 L~~~i~~ 94 (162)
+...+..
T Consensus 105 ~~~~~~~ 111 (267)
T 2vws_A 105 ARQVVSA 111 (267)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6555443
No 126
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=92.09 E-value=1.8 Score=32.69 Aligned_cols=87 Identities=6% Similarity=-0.083 Sum_probs=59.9
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCCCC----CCH-HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCC
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLMPC----LSG-IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKP 82 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~mp~----~~g-~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP 82 (162)
..++.++.+.+ ..+|+|.+...+.. +.. -++++.+++......++|++=....+. ..+.+.|++.|..--
T Consensus 168 p~e~iv~aa~e--~~~d~VglS~l~t~~~~~~~~~~~~i~~L~~~g~~~~i~vivGG~~~~~---~~a~~iGad~~~~da 242 (262)
T 1xrs_B 168 ANEDFIKKAVE--LEADVLLVSQTVTQKNVHIQNMTHLIELLEAEGLRDRFVLLCGGPRINN---EIAKELGYDAGFGPG 242 (262)
T ss_dssp CHHHHHHHHHH--TTCSEEEEECCCCTTSHHHHHHHHHHHHHHHTTCGGGSEEEEECTTCCH---HHHHTTTCSEEECTT
T ss_pred CHHHHHHHHHH--cCCCEEEEEeecCCccchHHHHHHHHHHHHhcCCCCCCEEEEECCcCCH---HHHHHcCCeEEECCc
Confidence 67788888888 89999999998875 222 235667766432233666544444333 346788999999888
Q ss_pred CCHHHHHHHHHHHHHhc
Q 044790 83 IRKNELQNLWQHVWRKC 99 (162)
Q Consensus 83 ~~~~~L~~~i~~~l~~~ 99 (162)
....++...|...+..+
T Consensus 243 ~~~~~~a~~l~~~~~~~ 259 (262)
T 1xrs_B 243 RFADDVATFAVKTLNDR 259 (262)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhh
Confidence 88888888887766544
No 127
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic DEGR aromatic hydrocarbons catabolism; 1.60A {Escherichia coli} PDB: 2v5k_A
Probab=92.00 E-value=2.9 Score=31.86 Aligned_cols=81 Identities=11% Similarity=0.029 Sum_probs=56.2
Q ss_pred HHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEE-eCCCCHHHH
Q 044790 10 LQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFL-VKPIRKNEL 88 (162)
Q Consensus 10 ~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l-~KP~~~~~L 88 (162)
.+.++.+.. ..+|.|++|++-...+--.+...++.... ...++++=+...+...+..++..|++.++ +|--+.+++
T Consensus 50 p~~~e~a~~--~GaD~v~lDlEh~~~~~~~~~~~l~a~~~-~~~~~~VRv~~~d~~di~~~ld~ga~~ImlP~V~saeea 126 (287)
T 2v5j_A 50 SYSAELLAG--AGFDWLLIDGEHAPNNVQTVLTQLQAIAP-YPSQPVVRPSWNDPVQIKQLLDVGTQTLLVPMVQNADEA 126 (287)
T ss_dssp HHHHHHHHT--SCCSEEEEESSSSSCCHHHHHHHHHHHTT-SSSEEEEECSSSCHHHHHHHHHTTCCEEEESCCCSHHHH
T ss_pred HHHHHHHHh--CCCCEEEEeCCCccchHHHHHHHHHHHHh-cCCCEEEEECCCCHHHHHHHHhCCCCEEEeCCCCCHHHH
Confidence 345566666 68999999998766665555565654322 35677777777778889999999999874 444566775
Q ss_pred HHHHH
Q 044790 89 QNLWQ 93 (162)
Q Consensus 89 ~~~i~ 93 (162)
...+.
T Consensus 127 ~~~~~ 131 (287)
T 2v5j_A 127 REAVR 131 (287)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 128
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*
Probab=91.88 E-value=2.6 Score=30.32 Aligned_cols=87 Identities=20% Similarity=0.196 Sum_probs=58.3
Q ss_pred EEcCHHHHHHHHHhhCCCccEEEEcCCCCC-------CCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCce
Q 044790 5 AVENGLQAWKILEDLMDQIDLVLTEVLMPC-------LSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVY 77 (162)
Q Consensus 5 ~a~~~~eal~~l~~~~~~~DlvllD~~mp~-------~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~ 77 (162)
.+.+..++.+... ...|.|+++...+. ..+++.++.+++. ..+||++..+- ..+.+.++++.|+++
T Consensus 116 sv~t~~~~~~a~~---~gaD~i~~~~~f~~~~~~g~~~~~~~~l~~~~~~---~~~pvia~GGI-~~~nv~~~~~~Ga~g 188 (221)
T 1yad_A 116 SVHSLEEAVQAEK---EDADYVLFGHVFETDCKKGLEGRGVSLLSDIKQR---ISIPVIAIGGM-TPDRLRDVKQAGADG 188 (221)
T ss_dssp EECSHHHHHHHHH---TTCSEEEEECCC----------CHHHHHHHHHHH---CCSCEEEESSC-CGGGHHHHHHTTCSE
T ss_pred EcCCHHHHHHHHh---CCCCEEEECCccccCCCCCCCCCCHHHHHHHHHh---CCCCEEEECCC-CHHHHHHHHHcCCCE
Confidence 4567888766654 46899999764332 2467888888764 37899888877 788899999999998
Q ss_pred EEe-----CCCCHHHHHHHHHHHHHh
Q 044790 78 FLV-----KPIRKNELQNLWQHVWRK 98 (162)
Q Consensus 78 ~l~-----KP~~~~~L~~~i~~~l~~ 98 (162)
+.. +.-++.+....+.+.++.
T Consensus 189 v~vgs~i~~~~d~~~~~~~~~~~~~~ 214 (221)
T 1yad_A 189 IAVMSGIFSSAEPLEAARRYSRKLKE 214 (221)
T ss_dssp EEESHHHHTSSSHHHHHHHHHHHHHH
T ss_pred EEEhHHhhCCCCHHHHHHHHHHHHHH
Confidence 754 333444444445444443
No 129
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=91.83 E-value=0.41 Score=36.32 Aligned_cols=79 Identities=15% Similarity=0.112 Sum_probs=52.7
Q ss_pred HHHHHHHhhCCCccEEEEcCCCCC--CC--------------------HHHHHHHHHccCCCCCCcEEEEecCC------
Q 044790 11 QAWKILEDLMDQIDLVLTEVLMPC--LS--------------------GIGLLRKIMNHKTCKNIPVIMMSSHD------ 62 (162)
Q Consensus 11 eal~~l~~~~~~~DlvllD~~mp~--~~--------------------g~~~~~~ir~~~~~~~~piI~lt~~~------ 62 (162)
+.++.+.+ . .|+|.+++-..+ .| .+++++.||+. ..+||++++-.+
T Consensus 34 ~~~~~l~~--~-aD~IElG~PfsdP~adGp~Iq~a~~~Al~~G~~~~~~~~~v~~ir~~---~~~Pii~m~y~n~v~~~g 107 (271)
T 1ujp_A 34 QAVEEVLP--Y-ADLLEIGLPYSDPLGDGPVIQRASELALRKGMSVQGALELVREVRAL---TEKPLFLMTYLNPVLAWG 107 (271)
T ss_dssp HHHHHHGG--G-CSSEEEECCCCC----CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH---CCSCEEEECCHHHHHHHC
T ss_pred HHHHHHHh--c-CCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc---CCCCEEEEecCcHHHHhh
Confidence 34555666 6 999999874422 22 25667888765 479999985222
Q ss_pred CHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHH
Q 044790 63 SMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHV 95 (162)
Q Consensus 63 ~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~ 95 (162)
....+..+.+.|++++|.-....+++...+..+
T Consensus 108 ~~~f~~~~~~aG~dGviv~Dl~~ee~~~~~~~~ 140 (271)
T 1ujp_A 108 PERFFGLFKQAGATGVILPDLPPDEDPGLVRLA 140 (271)
T ss_dssp HHHHHHHHHHHTCCEEECTTCCGGGCHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHH
Confidence 244567788999999999877776665555443
No 130
>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} SCOP: c.1.12.0
Probab=91.74 E-value=1.1 Score=33.62 Aligned_cols=83 Identities=11% Similarity=0.095 Sum_probs=57.7
Q ss_pred HHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEE-eCCCCHHHH
Q 044790 10 LQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFL-VKPIRKNEL 88 (162)
Q Consensus 10 ~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l-~KP~~~~~L 88 (162)
.+.++.+.. ..+|.||+|++-...+.-++...++.... ...++++=....+...+..+++.|+++++ +|--+.+++
T Consensus 27 p~~~e~a~~--~g~D~vilDlEhav~~~~k~~~~l~a~~~-~~~~~~VRVn~~~~~di~~~ld~G~~gI~lP~v~saed~ 103 (261)
T 3qz6_A 27 PDIVRIYAE--AGLDYFIVDCEHAAYTFREINHLVSVAKN-AGVSVLVRIPQVDRAHVQRLLDIGAEGFMIPGVQSAETM 103 (261)
T ss_dssp TTHHHHHHH--TTCSEEEEESSSSCCCHHHHHHHHHHHHH-HTCEEEEECSSCCHHHHHHHHHHTCCEEEETTCCSHHHH
T ss_pred HHHHHHHhc--CCcCEEEEeccCCCCCHHHHHHHHHHHhh-cCCeEEEEeCCCCHHHHHHHHhcCCCEEEECCcCCHHHH
Confidence 455666666 68999999999887777666666654221 24455555555677889999999999874 455566777
Q ss_pred HHHHHHH
Q 044790 89 QNLWQHV 95 (162)
Q Consensus 89 ~~~i~~~ 95 (162)
...+..+
T Consensus 104 ~~~~~~~ 110 (261)
T 3qz6_A 104 RETVRLA 110 (261)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6665543
No 131
>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus}
Probab=91.59 E-value=1.6 Score=33.04 Aligned_cols=87 Identities=17% Similarity=0.086 Sum_probs=57.9
Q ss_pred EEcCHHHHHHHHHhhCCCccEEEEcCCCCCCC-----HHHHHHHHHccCCCCC-CcEEEEecCCCHHHHHHHHHcCCceE
Q 044790 5 AVENGLQAWKILEDLMDQIDLVLTEVLMPCLS-----GIGLLRKIMNHKTCKN-IPVIMMSSHDSMSIVFKCLSKGAVYF 78 (162)
Q Consensus 5 ~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~-----g~~~~~~ir~~~~~~~-~piI~lt~~~~~~~~~~a~~~Ga~~~ 78 (162)
+..|...| +.+.. -.+++| +.+--|-.. -.++++.|++.. .. +|||+=..-..++.+..++++|+++.
T Consensus 131 ~~~D~~~a-k~l~~--~G~~aV-mPlg~pIGsG~Gi~~~~~L~~i~~~~--~~~vPVI~~GGI~tpsDAa~AmeLGAdgV 204 (268)
T 2htm_A 131 MGPDLVLA-KRLAA--LGTATV-MPLAAPIGSGWGVRTRALLELFAREK--ASLPPVVVDAGLGLPSHAAEVMELGLDAV 204 (268)
T ss_dssp ECSCHHHH-HHHHH--HTCSCB-EEBSSSTTTCCCSTTHHHHHHHHHTT--TTSSCBEEESCCCSHHHHHHHHHTTCCEE
T ss_pred cCCCHHHH-HHHHh--cCCCEE-EecCccCcCCcccCCHHHHHHHHHhc--CCCCeEEEeCCCCCHHHHHHHHHcCCCEE
Confidence 44555444 34444 356666 554433222 256788888733 46 99999888889999999999999998
Q ss_pred Ee-----CCCCHHHHHHHHHHHHH
Q 044790 79 LV-----KPIRKNELQNLWQHVWR 97 (162)
Q Consensus 79 l~-----KP~~~~~L~~~i~~~l~ 97 (162)
+. |.-++..+...+...+.
T Consensus 205 lVgSAI~~a~dP~~ma~af~~Av~ 228 (268)
T 2htm_A 205 LVNTAIAEAQDPPAMAEAFRLAVE 228 (268)
T ss_dssp EESHHHHTSSSHHHHHHHHHHHHH
T ss_pred EEChHHhCCCCHHHHHHHHHHHHH
Confidence 64 54556777777666544
No 132
>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A
Probab=91.55 E-value=3.3 Score=30.82 Aligned_cols=83 Identities=12% Similarity=0.028 Sum_probs=56.1
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceE-EeCCCCHH
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYF-LVKPIRKN 86 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~-l~KP~~~~ 86 (162)
+..+.++.+.. ..+|.|++|++-...+--++...++... ....++++=+...+...+..++..|++++ ++|--+.+
T Consensus 28 ~~p~~~e~a~~--~gaD~v~lDlEd~p~~~~~a~~~~~~~~-~~~~~~~VRv~~~~~~~i~~~l~~g~~gI~~P~V~s~~ 104 (256)
T 1dxe_A 28 SNPISTEVLGL--AGFDWLVLDGEHAPNDISTFIPQLMALK-GSASAPVVRVPTNEPVIIKRLLDIGFYNFLIPFVETKE 104 (256)
T ss_dssp CSHHHHHHHTT--SCCSEEEEESSSSSCCHHHHHHHHHHTT-TCSSEEEEECSSSCHHHHHHHHHTTCCEEEESCCCSHH
T ss_pred CCHHHHHHHHh--CCCCEEEEcCCCCCCCHHHHHHHHHHHH-hCCCcEEEECCCCCHHHHHHHHhcCCceeeecCcCCHH
Confidence 34455666666 7899999999876444444444444432 24567777777778888999999999986 45556677
Q ss_pred HHHHHHH
Q 044790 87 ELQNLWQ 93 (162)
Q Consensus 87 ~L~~~i~ 93 (162)
++...+.
T Consensus 105 ev~~~~~ 111 (256)
T 1dxe_A 105 EAELAVA 111 (256)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7755443
No 133
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=90.66 E-value=0.47 Score=36.01 Aligned_cols=78 Identities=17% Similarity=0.199 Sum_probs=52.7
Q ss_pred HHHHHHHhhCCCccEEEEcCCC--CCC--------------------CHHHHHHHHHccCCCCCCcEEEEecC------C
Q 044790 11 QAWKILEDLMDQIDLVLTEVLM--PCL--------------------SGIGLLRKIMNHKTCKNIPVIMMSSH------D 62 (162)
Q Consensus 11 eal~~l~~~~~~~DlvllD~~m--p~~--------------------~g~~~~~~ir~~~~~~~~piI~lt~~------~ 62 (162)
+.+..+.+ ...|+|=+.+-. |-. +.+++++.+|+.. ..+||++++=. .
T Consensus 38 ~~~~~l~~--~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~v~~~r~~~--~~~Pivlm~Y~n~v~~~g 113 (271)
T 3nav_A 38 AIMQTLID--AGADALELGMPFSDPLADGPTIQGANLRALAAKTTPDICFELIAQIRARN--PETPIGLLMYANLVYARG 113 (271)
T ss_dssp HHHHHHHH--TTCSSEEEECCCCCGGGCCSHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTSCEEEEECHHHHHHTC
T ss_pred HHHHHHHH--cCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--CCCCEEEEecCcHHHHHh
Confidence 34444555 578998887643 222 2355777777653 58999999732 3
Q ss_pred CHHHHHHHHHcCCceEEeCCCCHHHHHHHH
Q 044790 63 SMSIVFKCLSKGAVYFLVKPIRKNELQNLW 92 (162)
Q Consensus 63 ~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i 92 (162)
-...+.++.++|++++|.-....++....+
T Consensus 114 ~~~f~~~~~~aGvdGvIipDlp~ee~~~~~ 143 (271)
T 3nav_A 114 IDDFYQRCQKAGVDSVLIADVPTNESQPFV 143 (271)
T ss_dssp HHHHHHHHHHHTCCEEEETTSCGGGCHHHH
T ss_pred HHHHHHHHHHCCCCEEEECCCCHHHHHHHH
Confidence 355688899999999999877777744433
No 134
>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*
Probab=90.42 E-value=2.6 Score=30.24 Aligned_cols=85 Identities=13% Similarity=0.171 Sum_probs=54.0
Q ss_pred EcCHHHHHHHHHhhCCCccEEEEcCCCC--------CCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCce
Q 044790 6 VENGLQAWKILEDLMDQIDLVLTEVLMP--------CLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVY 77 (162)
Q Consensus 6 a~~~~eal~~l~~~~~~~DlvllD~~mp--------~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~ 77 (162)
+.+..++.+... ..+|.|++....| ...+++.++++++.. ..+||++..+-. .+.+.++++.|+++
T Consensus 123 ~~t~~e~~~a~~---~g~d~v~~~~v~~t~~~~~~~~~~~~~~l~~~~~~~--~~~pvia~GGI~-~~nv~~~~~~Ga~g 196 (227)
T 2tps_A 123 AHTMSEVKQAEE---DGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQG--ISIPIVGIGGIT-IDNAAPVIQAGADG 196 (227)
T ss_dssp ECSHHHHHHHHH---HTCSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHTT--CCCCEEEESSCC-TTTSHHHHHTTCSE
T ss_pred cCCHHHHHHHHh---CCCCEEEECCCcCCCCCCCCCCccCHHHHHHHHHhC--CCCCEEEEcCCC-HHHHHHHHHcCCCE
Confidence 467777655444 4689998732222 124688888887643 248998887766 77778888999998
Q ss_pred EEe-----CCCCHHHHHHHHHHHH
Q 044790 78 FLV-----KPIRKNELQNLWQHVW 96 (162)
Q Consensus 78 ~l~-----KP~~~~~L~~~i~~~l 96 (162)
+.. +.-++.+....+.+.+
T Consensus 197 v~vgs~i~~~~d~~~~~~~~~~~~ 220 (227)
T 2tps_A 197 VSMISAISQAEDPESAARKFREEI 220 (227)
T ss_dssp EEESHHHHTSSCHHHHHHHHHHHH
T ss_pred EEEhHHhhcCCCHHHHHHHHHHHH
Confidence 753 3335534444444333
No 135
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=90.32 E-value=2.1 Score=31.36 Aligned_cols=69 Identities=16% Similarity=0.184 Sum_probs=48.7
Q ss_pred CHHHHHHHHHhhCCCccE-EEEcCCCCCCCH---HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeC
Q 044790 8 NGLQAWKILEDLMDQIDL-VLTEVLMPCLSG---IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVK 81 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~Dl-vllD~~mp~~~g---~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~K 81 (162)
+..+..+.+.+ ...|. .+.|....+... +++++.|++. ..+||++...-.+.+.+..++..|++..+.=
T Consensus 32 d~~~~a~~~~~--~Gad~i~v~d~~~~~~~~~~~~~~i~~i~~~---~~iPvi~~Ggi~~~~~~~~~~~~Gad~V~lg 104 (252)
T 1ka9_F 32 DPVEAARAYDE--AGADELVFLDISATHEERAILLDVVARVAER---VFIPLTVGGGVRSLEDARKLLLSGADKVSVN 104 (252)
T ss_dssp CHHHHHHHHHH--HTCSCEEEEECCSSTTCHHHHHHHHHHHHTT---CCSCEEEESSCCSHHHHHHHHHHTCSEEEEC
T ss_pred CHHHHHHHHHH--cCCCEEEEEcCCccccCccccHHHHHHHHHh---CCCCEEEECCcCCHHHHHHHHHcCCCEEEEC
Confidence 45566666666 45664 455765433322 4456777654 4899999999889999999999999998754
No 136
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=90.22 E-value=0.99 Score=33.74 Aligned_cols=84 Identities=11% Similarity=0.048 Sum_probs=57.8
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCCCC-----CCHHHHHHHHHccCCCCCCcEEE-EecCCCHHHHHHHHHcCCceEEeC
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLMPC-----LSGIGLLRKIMNHKTCKNIPVIM-MSSHDSMSIVFKCLSKGAVYFLVK 81 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~mp~-----~~g~~~~~~ir~~~~~~~~piI~-lt~~~~~~~~~~a~~~Ga~~~l~K 81 (162)
+-.+.++.+.+ ...|.+=+|++... .-|.++++.||+.. +..|+.+ +--.....++..+.++||+-+..-
T Consensus 41 ~L~~~i~~l~~--~G~d~lHvDVmDg~FVpnit~G~~~v~~lr~~~--p~~~ldvHLmv~~p~~~i~~~~~aGAd~itvH 116 (246)
T 3inp_A 41 RLGDDVKAVLA--AGADNIHFDVMDNHYVPNLTFGPMVLKALRDYG--ITAGMDVHLMVKPVDALIESFAKAGATSIVFH 116 (246)
T ss_dssp GHHHHHHHHHH--TTCCCEEEEEEBSSSSSCBCCCHHHHHHHHHHT--CCSCEEEEEECSSCHHHHHHHHHHTCSEEEEC
T ss_pred hHHHHHHHHHH--cCCCEEEEEecCCCcCcchhcCHHHHHHHHHhC--CCCeEEEEEeeCCHHHHHHHHHHcCCCEEEEc
Confidence 45678888887 67888888775432 35789999998764 4566554 333445667888889999988776
Q ss_pred CCCHHHHHHHHHHH
Q 044790 82 PIRKNELQNLWQHV 95 (162)
Q Consensus 82 P~~~~~L~~~i~~~ 95 (162)
......+.+.|+.+
T Consensus 117 ~Ea~~~~~~~i~~i 130 (246)
T 3inp_A 117 PEASEHIDRSLQLI 130 (246)
T ss_dssp GGGCSCHHHHHHHH
T ss_pred cccchhHHHHHHHH
Confidence 65445555555554
No 137
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=90.03 E-value=2.3 Score=36.76 Aligned_cols=87 Identities=13% Similarity=-0.020 Sum_probs=61.1
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCCCC-C-CHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCH
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLMPC-L-SGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRK 85 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~mp~-~-~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~ 85 (162)
+.++.++...+ ..+|+|.+...|.. + ..-++++.|++... .++ +|++.+.........+.+.|+++|+..-.+.
T Consensus 635 ~~eeiv~aA~e--~~adiVglSsl~~~~~~~~~~vi~~L~~~G~-~~i-~VivGG~~p~~d~~~l~~~GaD~~f~~gt~~ 710 (727)
T 1req_A 635 TPEETARQAVE--ADVHVVGVSSLAGGHLTLVPALRKELDKLGR-PDI-LITVGGVIPEQDFDELRKDGAVEIYTPGTVI 710 (727)
T ss_dssp CHHHHHHHHHH--TTCSEEEEEECSSCHHHHHHHHHHHHHHTTC-TTS-EEEEEESCCGGGHHHHHHTTEEEEECTTCCH
T ss_pred CHHHHHHHHHH--cCCCEEEEeeecHhHHHHHHHHHHHHHhcCC-CCC-EEEEcCCCccccHHHHHhCCCCEEEcCCccH
Confidence 56888888888 89999999887753 2 23456778877541 244 4445543344445667889999999877788
Q ss_pred HHHHHHHHHHHHh
Q 044790 86 NELQNLWQHVWRK 98 (162)
Q Consensus 86 ~~L~~~i~~~l~~ 98 (162)
.++...|.+.+..
T Consensus 711 ~e~a~~l~~~l~~ 723 (727)
T 1req_A 711 PESAISLVKKLRA 723 (727)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888777654
No 138
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}
Probab=89.52 E-value=0.32 Score=34.81 Aligned_cols=87 Identities=9% Similarity=-0.011 Sum_probs=53.4
Q ss_pred cCHHHHHHHHHhhCCCccEEEEcCCCCC--CCHHHHHHHHHccCCCCCCcEEE--EecCCCHHHHHHHHHcCCceEEeCC
Q 044790 7 ENGLQAWKILEDLMDQIDLVLTEVLMPC--LSGIGLLRKIMNHKTCKNIPVIM--MSSHDSMSIVFKCLSKGAVYFLVKP 82 (162)
Q Consensus 7 ~~~~eal~~l~~~~~~~DlvllD~~mp~--~~g~~~~~~ir~~~~~~~~piI~--lt~~~~~~~~~~a~~~Ga~~~l~KP 82 (162)
.+.+++++.++.. ...+-++++.++. ..|.++++.||+.. +..|+++ ....-...++..+.++|++.+..-+
T Consensus 10 ~~~~~~~~~~~~~--~~~v~~iev~~~~~~~~g~~~i~~l~~~~--~~~~i~~~l~~~di~~~~~~~a~~~Gad~v~vh~ 85 (207)
T 3ajx_A 10 LSTEAALELAGKV--AEYVDIIELGTPLIKAEGLSVITAVKKAH--PDKIVFADMKTMDAGELEADIAFKAGADLVTVLG 85 (207)
T ss_dssp SCHHHHHHHHHHH--GGGCSEEEECHHHHHHHCTHHHHHHHHHS--TTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEET
T ss_pred CCHHHHHHHHHHh--hccCCEEEECcHHHHhhCHHHHHHHHHhC--CCCeEEEEEEecCccHHHHHHHHhCCCCEEEEec
Confidence 4678888888763 2223336665542 35678899998753 4678774 4432123447889999999998766
Q ss_pred CCHHHHHHHHHHHHH
Q 044790 83 IRKNELQNLWQHVWR 97 (162)
Q Consensus 83 ~~~~~L~~~i~~~l~ 97 (162)
....+....+.+.++
T Consensus 86 ~~~~~~~~~~~~~~~ 100 (207)
T 3ajx_A 86 SADDSTIAGAVKAAQ 100 (207)
T ss_dssp TSCHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHH
Confidence 554333333333333
No 139
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A*
Probab=89.48 E-value=4.3 Score=34.74 Aligned_cols=89 Identities=6% Similarity=-0.010 Sum_probs=62.8
Q ss_pred cCHHHHHHHHHhhCCCccEEEEcCCCCC----CCHH-HHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeC
Q 044790 7 ENGLQAWKILEDLMDQIDLVLTEVLMPC----LSGI-GLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVK 81 (162)
Q Consensus 7 ~~~~eal~~l~~~~~~~DlvllD~~mp~----~~g~-~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~K 81 (162)
...++.++.+.+ ..+|+|.+...|.. +..+ ++++.|++......++|++=......+ .+.+.|++.|...
T Consensus 644 VPpEeIVeAA~E--edADVVGLSsLLTt~dihL~~MkevIelLrE~GlrDkIkVIVGGa~~tqd---~AkeIGADa~f~D 718 (763)
T 3kp1_A 644 VPVEKLVDAAIE--LKADAILASTIISHDDIHYKNMKRIHELAVEKGIRDKIMIGCGGTQVTPE---VAVKQGVDAGFGR 718 (763)
T ss_dssp BCHHHHHHHHHH--TTCSEEEEECCCCGGGHHHHHHHHHHHHHHHTTCTTTSEEEEECTTCCHH---HHHTTTCSEEECT
T ss_pred CCHHHHHHHHHH--cCCCEEEEeccccCchhhHHHHHHHHHHHHhcCCCCCCEEEEECCCCCHH---HHHHcCCcEEECC
Confidence 367888899988 89999999988876 3443 466777775422235555443334443 3458999999988
Q ss_pred CCCHHHHHHHHHHHHHhcc
Q 044790 82 PIRKNELQNLWQHVWRKCH 100 (162)
Q Consensus 82 P~~~~~L~~~i~~~l~~~~ 100 (162)
.....++...|...+..+.
T Consensus 719 ATeAVeVA~~Ll~~l~er~ 737 (763)
T 3kp1_A 719 GSKGIHVATFLVKKRREMR 737 (763)
T ss_dssp TCCHHHHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHHHHHHhh
Confidence 8888888888877776543
No 140
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=89.24 E-value=3.2 Score=36.07 Aligned_cols=90 Identities=11% Similarity=-0.011 Sum_probs=62.5
Q ss_pred cCHHHHHHHHHhhCCCccEEEEcCCCCC-C-CHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCC
Q 044790 7 ENGLQAWKILEDLMDQIDLVLTEVLMPC-L-SGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIR 84 (162)
Q Consensus 7 ~~~~eal~~l~~~~~~~DlvllD~~mp~-~-~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~ 84 (162)
.+.++.++...+ ..+|+|.+...|.. + ..-++++.|++... .++ +|++.+.........+.+.|+++|+..--+
T Consensus 642 v~~eeiv~aA~e--~~adiVglSsl~~~~~~~~~~vi~~Lr~~G~-~dv-~VivGG~~P~~d~~~l~~~GaD~~f~pgtd 717 (762)
T 2xij_A 642 QTPREVAQQAVD--ADVHAVGVSTLAAGHKTLVPELIKELNSLGR-PDI-LVMCGGVIPPQDYEFLFEVGVSNVFGPGTR 717 (762)
T ss_dssp CCHHHHHHHHHH--TTCSEEEEEECSSCHHHHHHHHHHHHHHTTC-TTS-EEEEEESCCGGGHHHHHHHTCCEEECTTCC
T ss_pred CCHHHHHHHHHH--cCCCEEEEeeecHHHHHHHHHHHHHHHhcCC-CCC-EEEEeCCCCcccHHHHHhCCCCEEeCCCCC
Confidence 356888888888 88999999887753 2 22456777877541 244 344554233434556788999999987778
Q ss_pred HHHHHHHHHHHHHhcc
Q 044790 85 KNELQNLWQHVWRKCH 100 (162)
Q Consensus 85 ~~~L~~~i~~~l~~~~ 100 (162)
..+....+...+....
T Consensus 718 ~~e~~~~i~~~l~~~~ 733 (762)
T 2xij_A 718 IPKAAVQVLDDIEKCL 733 (762)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 8888888888876543
No 141
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=89.17 E-value=1.5 Score=36.09 Aligned_cols=66 Identities=14% Similarity=0.122 Sum_probs=48.5
Q ss_pred HHHHHHHHhhCCCccEEEEcCCCCCCCH-HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 10 LQAWKILEDLMDQIDLVLTEVLMPCLSG-IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 10 ~eal~~l~~~~~~~DlvllD~~mp~~~g-~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
.+..+.+.+ ..+|+|.+|...+...+ +++++++++.. +.+||++ ......+.+..+.++|++.++.
T Consensus 233 ~~~a~~l~~--aG~d~I~id~a~g~~~~~~~~i~~ir~~~--p~~~Vi~-g~v~t~e~a~~l~~aGaD~I~V 299 (496)
T 4fxs_A 233 EERVKALVE--AGVDVLLIDSSHGHSEGVLQRIRETRAAY--PHLEIIG-GNVATAEGARALIEAGVSAVKV 299 (496)
T ss_dssp HHHHHHHHH--TTCSEEEEECSCTTSHHHHHHHHHHHHHC--TTCCEEE-EEECSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHh--ccCceEEeccccccchHHHHHHHHHHHHC--CCceEEE-cccCcHHHHHHHHHhCCCEEEE
Confidence 344444555 57999999998876543 57888998764 6788876 3234677888999999999875
No 142
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=88.84 E-value=1.7 Score=31.80 Aligned_cols=83 Identities=14% Similarity=0.092 Sum_probs=54.4
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCC----C-CCCHHHHHHHHHccCCCCCCcEE--EEecCCCHHHHHHHHHcCCceEEe
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLM----P-CLSGIGLLRKIMNHKTCKNIPVI--MMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~m----p-~~~g~~~~~~ir~~~~~~~~piI--~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
+..+.++.+.+ ...|++=+|+.- | -..|.++++.||+.. ..|+. +++. +...++..++++|++.+..
T Consensus 18 ~l~~~i~~~~~--~Gad~ihldi~DG~fvp~~~~g~~~v~~lr~~~---~~~~~vhlmv~-dp~~~i~~~~~aGadgv~v 91 (230)
T 1tqj_A 18 RLGEEIKAVDE--AGADWIHVDVMDGRFVPNITIGPLIVDAIRPLT---KKTLDVHLMIV-EPEKYVEDFAKAGADIISV 91 (230)
T ss_dssp GHHHHHHHHHH--TTCSEEEEEEEBSSSSSCBCBCHHHHHHHGGGC---CSEEEEEEESS-SGGGTHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHH--cCCCEEEEEEEecCCCcchhhhHHHHHHHHhhc---CCcEEEEEEcc-CHHHHHHHHHHcCCCEEEE
Confidence 45667777776 677887777621 1 234679999998753 45555 6774 3455678899999999976
Q ss_pred CCC--CHHHHHHHHHHHH
Q 044790 81 KPI--RKNELQNLWQHVW 96 (162)
Q Consensus 81 KP~--~~~~L~~~i~~~l 96 (162)
-.. ..+.+...++.+.
T Consensus 92 h~e~~~~~~~~~~~~~i~ 109 (230)
T 1tqj_A 92 HVEHNASPHLHRTLCQIR 109 (230)
T ss_dssp ECSTTTCTTHHHHHHHHH
T ss_pred CcccccchhHHHHHHHHH
Confidence 655 4445555555543
No 143
>1izc_A Macrophomate synthase intermolecular diels-aldera; TIM-barrel, pyruvate Mg(II) complex, lyase; 1.70A {Macrophoma commelinae} SCOP: c.1.12.5
Probab=88.62 E-value=7.3 Score=30.37 Aligned_cols=84 Identities=15% Similarity=0.113 Sum_probs=55.9
Q ss_pred HHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCC--CCCCcEEEEecCCCHHHHHHHHHcCCceEE-eCCCCH
Q 044790 9 GLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKT--CKNIPVIMMSSHDSMSIVFKCLSKGAVYFL-VKPIRK 85 (162)
Q Consensus 9 ~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~--~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l-~KP~~~ 85 (162)
..+.++.+.. ..+|.|++|+.-...+--.+.+.|+.... ....++++=+...+...+..++..|+++++ +|--+.
T Consensus 52 ~p~~~e~a~~--~GaD~vilDlEha~~~~e~~~~~l~a~~~~~~~~~~~~VRv~~~~~~di~~~LdaGa~gImlP~V~sa 129 (339)
T 1izc_A 52 STFVTKVLAA--TKPDFVWIDVEHGMFNRLELHDAIHAAQHHSEGRSLVIVRVPKHDEVSLSTALDAGAAGIVIPHVETV 129 (339)
T ss_dssp CHHHHHHHHH--TCCSEEEEETTTSCCCHHHHHHHHHHHHHHTTTCSEEEEECCTTCHHHHHHHHHHTCSEEEETTCCCH
T ss_pred CHHHHHHHHh--CCCCEEEEECCCCCCcHHHHHHHHHHhhhcCCCCCeEEEEeCCCCHHHHHHHHhCCCCEEEeCCCCCH
Confidence 3445566666 68999999998765555555555543210 112667777777788889999999999864 444566
Q ss_pred HHHHHHHHH
Q 044790 86 NELQNLWQH 94 (162)
Q Consensus 86 ~~L~~~i~~ 94 (162)
+++......
T Consensus 130 ee~~~~~~~ 138 (339)
T 1izc_A 130 EEVREFVKE 138 (339)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777665544
No 144
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=88.32 E-value=4.2 Score=29.97 Aligned_cols=67 Identities=13% Similarity=0.093 Sum_probs=48.2
Q ss_pred HHHHHHHHHhhCCCccEEEE-cCC----CCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeC
Q 044790 9 GLQAWKILEDLMDQIDLVLT-EVL----MPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVK 81 (162)
Q Consensus 9 ~~eal~~l~~~~~~~Dlvll-D~~----mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~K 81 (162)
..+..+.+.. ..++.|++ ++. +.+. .+++++++++. ..+|||....-...+.+.++++.|+++++.=
T Consensus 158 ~~e~~~~~~~--~G~~~i~~t~~~~~g~~~g~-~~~~i~~l~~~---~~ipvia~GGI~~~ed~~~~~~~Gadgv~vg 229 (266)
T 2w6r_A 158 LRDWVVEVEK--RGAGEILLTSIDRDGTKSGY-DTEMIRFVRPL---TTLPIIASGGAGKMEHFLEAFLAGADAALAA 229 (266)
T ss_dssp HHHHHHHHHH--TTCSEEEEEETTTTTTCSCC-CHHHHHHHGGG---CCSCEEEESCCCSHHHHHHHHHHTCSEEEES
T ss_pred HHHHHHHHHH--cCCCEEEEEeecCCCCcCCC-CHHHHHHHHHH---cCCCEEEeCCCCCHHHHHHHHHcCCHHHHcc
Confidence 4555555666 56777665 432 2222 37889999865 4799999999888899999999999988653
No 145
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=88.19 E-value=5.3 Score=28.78 Aligned_cols=81 Identities=15% Similarity=0.224 Sum_probs=53.8
Q ss_pred CHHHHHHHHHhhCCCccEEEE-cCCCCCC---CHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe---
Q 044790 8 NGLQAWKILEDLMDQIDLVLT-EVLMPCL---SGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV--- 80 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~Dlvll-D~~mp~~---~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~--- 80 (162)
+..+.++.+.+ ..+|.|++ .+...+. -.++.++.+++. ..+||++...-...+.+.++++.|+++++.
T Consensus 155 ~~~e~~~~~~~--~G~d~i~~~~~~~~g~~~~~~~~~i~~l~~~---~~~pvia~GGi~~~~~~~~~~~~Ga~~v~vgsa 229 (253)
T 1h5y_A 155 DAVKWAKEVEE--LGAGEILLTSIDRDGTGLGYDVELIRRVADS---VRIPVIASGGAGRVEHFYEAAAAGADAVLAASL 229 (253)
T ss_dssp EHHHHHHHHHH--HTCSEEEEEETTTTTTCSCCCHHHHHHHHHH---CSSCEEEESCCCSHHHHHHHHHTTCSEEEESHH
T ss_pred CHHHHHHHHHh--CCCCEEEEecccCCCCcCcCCHHHHHHHHHh---cCCCEEEeCCCCCHHHHHHHHHcCCcHHHHHHH
Confidence 34455555555 46787764 4432111 146788888765 378999888877778889999999998864
Q ss_pred ---CCCCHHHHHHHHH
Q 044790 81 ---KPIRKNELQNLWQ 93 (162)
Q Consensus 81 ---KP~~~~~L~~~i~ 93 (162)
.+.+..++...++
T Consensus 230 l~~~~~~~~~~~~~l~ 245 (253)
T 1h5y_A 230 FHFRVLSIAQVKRYLK 245 (253)
T ss_dssp HHTTSSCHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHH
Confidence 3456666655554
No 146
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Probab=88.10 E-value=0.95 Score=32.45 Aligned_cols=67 Identities=10% Similarity=0.067 Sum_probs=47.9
Q ss_pred EcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCC-CCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 6 VENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCK-NIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 6 a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~-~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
+.+..++.+... ..+|.|++-- ....|++.++++++.. + .+||++..+-. .+.+.++++.|+++++.
T Consensus 108 ~~t~~e~~~a~~---~G~d~v~v~~--t~~~g~~~~~~l~~~~--~~~ipvia~GGI~-~~~i~~~~~~Ga~gv~v 175 (212)
T 2v82_A 108 CATATEAFTALE---AGAQALKIFP--SSAFGPQYIKALKAVL--PSDIAVFAVGGVT-PENLAQWIDAGCAGAGL 175 (212)
T ss_dssp ECSHHHHHHHHH---TTCSEEEETT--HHHHCHHHHHHHHTTS--CTTCEEEEESSCC-TTTHHHHHHHTCSEEEE
T ss_pred cCCHHHHHHHHH---CCCCEEEEec--CCCCCHHHHHHHHHhc--cCCCeEEEeCCCC-HHHHHHHHHcCCCEEEE
Confidence 677888866644 4689998621 1123578888887643 3 58999888765 77788899999999864
No 147
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=87.94 E-value=1.2 Score=33.11 Aligned_cols=77 Identities=18% Similarity=0.281 Sum_probs=48.6
Q ss_pred HHHHHHhhCCCccEEEEcCCCC--CCC--------------------HHHHHHHHHccCCCCCCcEEEEecCCCHH---H
Q 044790 12 AWKILEDLMDQIDLVLTEVLMP--CLS--------------------GIGLLRKIMNHKTCKNIPVIMMSSHDSMS---I 66 (162)
Q Consensus 12 al~~l~~~~~~~DlvllD~~mp--~~~--------------------g~~~~~~ir~~~~~~~~piI~lt~~~~~~---~ 66 (162)
.++.+.+ ...|+|-+++-.. -+| ++++++.+|+. .++|+++++-. +.. .
T Consensus 37 ~~~~l~~--~Gad~ielg~p~~dp~~dg~~i~~a~~~al~~g~~~~~~~~~i~~ir~~---~~~Pv~~m~~~-~~~~~~~ 110 (262)
T 1rd5_A 37 ALRLLDG--CGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTPE---LSCPVVLLSYY-KPIMFRS 110 (262)
T ss_dssp HHHHHHH--TTCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHHHHHHHGGG---CSSCEEEECCS-HHHHSCC
T ss_pred HHHHHHH--cCCCEEEECCCCCCcccCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc---CCCCEEEEecC-cHHHHHH
Confidence 3444555 6799999987443 233 45667788764 47899887522 221 1
Q ss_pred HHHHHHcCCceEEeCCCCHHHHHHHHHH
Q 044790 67 VFKCLSKGAVYFLVKPIRKNELQNLWQH 94 (162)
Q Consensus 67 ~~~a~~~Ga~~~l~KP~~~~~L~~~i~~ 94 (162)
+..+.+.|+++++.-....+++...+..
T Consensus 111 ~~~a~~aGadgv~v~d~~~~~~~~~~~~ 138 (262)
T 1rd5_A 111 LAKMKEAGVHGLIVPDLPYVAAHSLWSE 138 (262)
T ss_dssp THHHHHTTCCEEECTTCBTTTHHHHHHH
T ss_pred HHHHHHcCCCEEEEcCCChhhHHHHHHH
Confidence 2348899999999866555555444443
No 148
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=87.88 E-value=3.7 Score=29.16 Aligned_cols=83 Identities=12% Similarity=0.087 Sum_probs=54.4
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCCCCC-------CHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLMPCL-------SGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~mp~~-------~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
+..+.++.+.+ ...|.|.++ |+. .+++.++++++.. +.+||++-.+- ..+.+..+++.|++.++.
T Consensus 115 t~~~~~~~~~~--~g~d~i~v~---~g~~g~~~~~~~~~~i~~l~~~~--~~~~i~~~gGI-~~~~~~~~~~~Gad~vvv 186 (211)
T 3f4w_A 115 DLPARVRLLEE--AGADMLAVH---TGTDQQAAGRKPIDDLITMLKVR--RKARIAVAGGI-SSQTVKDYALLGPDVVIV 186 (211)
T ss_dssp SHHHHHHHHHH--HTCCEEEEE---CCHHHHHTTCCSHHHHHHHHHHC--SSCEEEEESSC-CTTTHHHHHTTCCSEEEE
T ss_pred CHHHHHHHHHH--cCCCEEEEc---CCCcccccCCCCHHHHHHHHHHc--CCCcEEEECCC-CHHHHHHHHHcCCCEEEE
Confidence 44344455554 467887766 332 2467888888753 47888776665 478888999999998864
Q ss_pred -----CCCCHHHHHHHHHHHHHh
Q 044790 81 -----KPIRKNELQNLWQHVWRK 98 (162)
Q Consensus 81 -----KP~~~~~L~~~i~~~l~~ 98 (162)
+.-++.+-.+.+++.++.
T Consensus 187 Gsai~~~~d~~~~~~~l~~~~~~ 209 (211)
T 3f4w_A 187 GSAITHAADPAGEARKISQVLLQ 209 (211)
T ss_dssp CHHHHTCSSHHHHHHHHHHHHHH
T ss_pred CHHHcCCCCHHHHHHHHHHHHhh
Confidence 555666666666655543
No 149
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=87.73 E-value=2.7 Score=34.42 Aligned_cols=68 Identities=16% Similarity=0.082 Sum_probs=49.6
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCCCCCCH-HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLMPCLSG-IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~mp~~~g-~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
+..+..+.+.+ ..+|+|.+|...+...+ +++++++++.. +.+||++- .....+.+..+.++|++.+..
T Consensus 229 ~~~~~a~~l~~--aG~d~I~id~a~g~~~~~~~~v~~i~~~~--p~~~Vi~g-~v~t~e~a~~l~~aGaD~I~v 297 (490)
T 4avf_A 229 DTGERVAALVA--AGVDVVVVDTAHGHSKGVIERVRWVKQTF--PDVQVIGG-NIATAEAAKALAEAGADAVKV 297 (490)
T ss_dssp THHHHHHHHHH--TTCSEEEEECSCCSBHHHHHHHHHHHHHC--TTSEEEEE-EECSHHHHHHHHHTTCSEEEE
T ss_pred chHHHHHHHhh--cccceEEecccCCcchhHHHHHHHHHHHC--CCceEEEe-eeCcHHHHHHHHHcCCCEEEE
Confidence 33455555665 57999999988765433 57888888764 67888763 234677889999999999875
No 150
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=87.47 E-value=6.7 Score=28.57 Aligned_cols=79 Identities=16% Similarity=0.114 Sum_probs=54.2
Q ss_pred HHHHHHHHhhCCCccEEE-EcCCCCCC-C--HHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe-----
Q 044790 10 LQAWKILEDLMDQIDLVL-TEVLMPCL-S--GIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV----- 80 (162)
Q Consensus 10 ~eal~~l~~~~~~~Dlvl-lD~~mp~~-~--g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~----- 80 (162)
.+..+.+.+ ..++.|+ .++.-.++ . .+++++++++. ..+|||....-...+.+.++++.|+++++.
T Consensus 155 ~e~~~~~~~--~G~~~i~~~~~~~~g~~~g~~~~~i~~l~~~---~~ipvia~GGI~~~~d~~~~~~~Gadgv~vgsal~ 229 (252)
T 1ka9_F 155 VEWAVKGVE--LGAGEILLTSMDRDGTKEGYDLRLTRMVAEA---VGVPVIASGGAGRMEHFLEAFQAGAEAALAASVFH 229 (252)
T ss_dssp HHHHHHHHH--HTCCEEEEEETTTTTTCSCCCHHHHHHHHHH---CSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHH
T ss_pred HHHHHHHHH--cCCCEEEEecccCCCCcCCCCHHHHHHHHHH---cCCCEEEeCCCCCHHHHHHHHHCCCHHHHHHHHHH
Confidence 444455555 4566444 55432211 2 38899999875 378999999888889999999999999865
Q ss_pred -CCCCHHHHHHHHH
Q 044790 81 -KPIRKNELQNLWQ 93 (162)
Q Consensus 81 -KP~~~~~L~~~i~ 93 (162)
.|++..++.+.+.
T Consensus 230 ~~~~~~~~~~~~l~ 243 (252)
T 1ka9_F 230 FGEIPIPKLKRYLA 243 (252)
T ss_dssp TTSSCHHHHHHHHH
T ss_pred cCCCCHHHHHHHHH
Confidence 3567777766554
No 151
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=87.39 E-value=5.1 Score=30.20 Aligned_cols=73 Identities=14% Similarity=0.039 Sum_probs=51.6
Q ss_pred EEEcCHHHHHHHHHhhCCCccEEEEcCC---CCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 4 IAVENGLQAWKILEDLMDQIDLVLTEVL---MPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 4 ~~a~~~~eal~~l~~~~~~~DlvllD~~---mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
..+++.+|+...+.. .+|+|-+.-. ... -+++.++.|...- ...+|+|..++-...+.+.++.+.|+++++.
T Consensus 167 vev~t~ee~~~A~~~---Gad~IGv~~r~l~~~~-~dl~~~~~l~~~v-~~~~pvVaegGI~t~edv~~l~~~GadgvlV 241 (272)
T 3qja_A 167 VEVHTEQEADRALKA---GAKVIGVNARDLMTLD-VDRDCFARIAPGL-PSSVIRIAESGVRGTADLLAYAGAGADAVLV 241 (272)
T ss_dssp EEESSHHHHHHHHHH---TCSEEEEESBCTTTCC-BCTTHHHHHGGGS-CTTSEEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred EEcCCHHHHHHHHHC---CCCEEEECCCcccccc-cCHHHHHHHHHhC-cccCEEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 467888887665544 6888887532 111 2356667776532 1378999988888899999999999999986
Q ss_pred C
Q 044790 81 K 81 (162)
Q Consensus 81 K 81 (162)
=
T Consensus 242 G 242 (272)
T 3qja_A 242 G 242 (272)
T ss_dssp C
T ss_pred c
Confidence 3
No 152
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=87.26 E-value=8 Score=29.62 Aligned_cols=70 Identities=19% Similarity=0.132 Sum_probs=51.4
Q ss_pred EEcCHHHHHHHHHhhCCCccEEEEcCCCC----C---CCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCce
Q 044790 5 AVENGLQAWKILEDLMDQIDLVLTEVLMP----C---LSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVY 77 (162)
Q Consensus 5 ~a~~~~eal~~l~~~~~~~DlvllD~~mp----~---~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~ 77 (162)
.+.+..++..... ..+|.|+++-.-+ + ...+++++.++.. ..+|||+-..-.+.+.+.+++..|+++
T Consensus 124 ~v~t~~~a~~~~~---~GaD~i~v~g~~~GG~~G~~~~~~~~~l~~v~~~---~~iPviaaGGI~~~~~v~~al~~GAdg 197 (328)
T 2gjl_A 124 KCTAVRHALKAER---LGVDAVSIDGFECAGHPGEDDIPGLVLLPAAANR---LRVPIIASGGFADGRGLVAALALGADA 197 (328)
T ss_dssp EESSHHHHHHHHH---TTCSEEEEECTTCSBCCCSSCCCHHHHHHHHHTT---CCSCEEEESSCCSHHHHHHHHHHTCSE
T ss_pred eCCCHHHHHHHHH---cCCCEEEEECCCCCcCCCCccccHHHHHHHHHHh---cCCCEEEECCCCCHHHHHHHHHcCCCE
Confidence 4567777776555 4689998853222 1 2567888888764 378999888887888999999999998
Q ss_pred EEe
Q 044790 78 FLV 80 (162)
Q Consensus 78 ~l~ 80 (162)
+..
T Consensus 198 V~v 200 (328)
T 2gjl_A 198 INM 200 (328)
T ss_dssp EEE
T ss_pred EEE
Confidence 754
No 153
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=87.11 E-value=2.8 Score=34.57 Aligned_cols=68 Identities=12% Similarity=0.165 Sum_probs=50.8
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCCCCCCH-HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLMPCLSG-IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~mp~~~g-~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
+..+.++.+.+ ..+|+|.+|...+...+ ++++++|++.. +.+|||+-. -...+....+.++|++.++.
T Consensus 256 d~~era~aLve--aGvd~I~Id~a~g~~~~v~~~i~~i~~~~--~~~~vi~g~-v~t~e~a~~~~~aGad~i~v 324 (511)
T 3usb_A 256 DAMTRIDALVK--ASVDAIVLDTAHGHSQGVIDKVKEVRAKY--PSLNIIAGN-VATAEATKALIEAGANVVKV 324 (511)
T ss_dssp THHHHHHHHHH--TTCSEEEEECSCTTSHHHHHHHHHHHHHC--TTSEEEEEE-ECSHHHHHHHHHHTCSEEEE
T ss_pred chHHHHHHHHh--hccceEEecccccchhhhhhHHHHHHHhC--CCceEEeee-eccHHHHHHHHHhCCCEEEE
Confidence 33455556666 68999999998877666 46889998764 677877533 34678889999999998874
No 154
>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A
Probab=87.02 E-value=8.7 Score=29.40 Aligned_cols=91 Identities=13% Similarity=0.100 Sum_probs=61.9
Q ss_pred EEEEcCHHHHHHHHHhhCCCccEEEEcCC-------------------------CCC----------CCHHHHHHHHHcc
Q 044790 3 VIAVENGLQAWKILEDLMDQIDLVLTEVL-------------------------MPC----------LSGIGLLRKIMNH 47 (162)
Q Consensus 3 v~~a~~~~eal~~l~~~~~~~DlvllD~~-------------------------mp~----------~~g~~~~~~ir~~ 47 (162)
+..+.+..|++..+.. .+|+|...-. |+. ...++++++++..
T Consensus 129 vv~v~~~~Ea~~a~~~---Gad~I~v~g~~gTG~~~~~v~h~~~~~~eir~l~~~~~d~L~t~~~~~~~~~~ll~~i~~~ 205 (297)
T 4adt_A 129 VCGCTNLGEALRRISE---GASMIRTKGEAGTGNIIEAIKHIRTVNNEIKYLCSLDESEVYNFAKKLRAPIDLILLTRKL 205 (297)
T ss_dssp EEEESSHHHHHHHHHH---TCSEEEECCCTTSCCCHHHHHHHHHHHHHHHHHHHSCTTTHHHHHHHHTCCHHHHHHHHHH
T ss_pred EEEeCCHHHHHHHHhC---CCCEEEECCCcCCCchHHHHHHHHHhhhhhhhhccccccccccccccCCCCHHHHHHHHHh
Confidence 3468899999888876 5788887632 100 1235667777664
Q ss_pred CCCCCCcEEE--EecCCCHHHHHHHHHcCCceEEe-----CCCCHHHHHHHHHHHHHhc
Q 044790 48 KTCKNIPVIM--MSSHDSMSIVFKCLSKGAVYFLV-----KPIRKNELQNLWQHVWRKC 99 (162)
Q Consensus 48 ~~~~~~piI~--lt~~~~~~~~~~a~~~Ga~~~l~-----KP~~~~~L~~~i~~~l~~~ 99 (162)
..+|||+ -..-...+.+.+++..|+++++. |.-++......+...+..+
T Consensus 206 ---~~iPVivvA~GGI~t~~dv~~~~~~GAdgVlVGsai~~a~dp~~~~~~l~~ai~~~ 261 (297)
T 4adt_A 206 ---KRLPVVNFAAGGIATPADAAMCMQLGMDGVFVGSGIFESENPQKMASSIVMAVSNF 261 (297)
T ss_dssp ---TSCSSEEEEESCCCSHHHHHHHHHTTCSCEEESHHHHTSSCHHHHHHHHHHHHHTT
T ss_pred ---cCCCeEEEecCCCCCHHHHHHHHHcCCCEEEEhHHHHcCCCHHHHHHHHHHHHHhh
Confidence 3578774 44455889999999999999975 5556776666666665554
No 155
>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A
Probab=86.85 E-value=5.1 Score=30.56 Aligned_cols=91 Identities=12% Similarity=0.124 Sum_probs=66.0
Q ss_pred EEEEcCHHHHHHHHHhhCCCccEEEEcCC-------------------------C-----------CCCCHHHHHHHHHc
Q 044790 3 VIAVENGLQAWKILEDLMDQIDLVLTEVL-------------------------M-----------PCLSGIGLLRKIMN 46 (162)
Q Consensus 3 v~~a~~~~eal~~l~~~~~~~DlvllD~~-------------------------m-----------p~~~g~~~~~~ir~ 46 (162)
+.-+.+..||+..+.. ..|+|=.=.. | .....|+++++|++
T Consensus 119 v~~~~~l~EAlrri~e---GA~mIrTtge~gtg~v~~av~h~r~~~~~i~~l~g~~t~~el~~~a~~~~ad~elI~~Ike 195 (291)
T 3o07_A 119 VCGAKDLGEALRRINE---GAAMIRTKGEAGTGDVSEAVKHIRRITEEIKACQQLKSEDDIAKVAEEMRVPVSLLKDVLE 195 (291)
T ss_dssp EEEESSHHHHHHHHHH---TCSEEEECCCTTSCCTHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred EeeCCCHHHHHHHHHC---CCCEEEecCcCCCccHHHHHHHHHHHHHHHHHHHcCCCHHHhhhcccccCCCHHHHHHHHH
Confidence 3467899999999887 5788765211 1 11234788888887
Q ss_pred cCCCCCCcEEEEe--cCCCHHHHHHHHHcCCceEEe-----CCCCHHHHHHHHHHHHHhc
Q 044790 47 HKTCKNIPVIMMS--SHDSMSIVFKCLSKGAVYFLV-----KPIRKNELQNLWQHVWRKC 99 (162)
Q Consensus 47 ~~~~~~~piI~lt--~~~~~~~~~~a~~~Ga~~~l~-----KP~~~~~L~~~i~~~l~~~ 99 (162)
. ..+|||++. .-..++.+.++++.|+++.+. +--++......+...+..+
T Consensus 196 ~---~~IPVV~IAnGGI~TpedA~~~le~GaDGVmVGrAI~~s~DP~~~Akafv~Av~~~ 252 (291)
T 3o07_A 196 K---GKLPVVNFAAGGVATPADAALLMQLGCDGVFVGSGIFKSSNPVRLATAVVEATTHF 252 (291)
T ss_dssp H---TSCSSCEEBCSSCCSHHHHHHHHHTTCSCEEECGGGGGSSCHHHHHHHHHHHHHTT
T ss_pred c---cCCCEEEecCCCCCCHHHHHHHHHhCCCEEEEchHHhCCCCHHHHHHHHHHHHHhc
Confidence 5 479999873 334689999999999999854 4556788888888777665
No 156
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=86.65 E-value=3.1 Score=32.86 Aligned_cols=66 Identities=15% Similarity=-0.012 Sum_probs=46.7
Q ss_pred HHHHHHHHhhCCCccEEEEcCCCCCCCH-HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 10 LQAWKILEDLMDQIDLVLTEVLMPCLSG-IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 10 ~eal~~l~~~~~~~DlvllD~~mp~~~g-~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
.+.++.+.+ ..+|+|.+|........ ++.+++||+.. +.+|||+= .-...+.+..+.++|+|.+..
T Consensus 102 ~e~~~~a~~--aGvdvI~id~a~G~~~~~~e~I~~ir~~~--~~~~Vi~G-~V~T~e~A~~a~~aGaD~I~V 168 (361)
T 3r2g_A 102 LQRAEALRD--AGADFFCVDVAHAHAKYVGKTLKSLRQLL--GSRCIMAG-NVATYAGADYLASCGADIIKA 168 (361)
T ss_dssp HHHHHHHHH--TTCCEEEEECSCCSSHHHHHHHHHHHHHH--TTCEEEEE-EECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHH--cCCCEEEEeCCCCCcHhHHHHHHHHHHhc--CCCeEEEc-CcCCHHHHHHHHHcCCCEEEE
Confidence 345555556 67999999976643322 57888998754 57888861 123577889999999998875
No 157
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=86.50 E-value=1.7 Score=31.32 Aligned_cols=63 Identities=19% Similarity=0.267 Sum_probs=49.7
Q ss_pred HHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeC
Q 044790 10 LQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVK 81 (162)
Q Consensus 10 ~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~K 81 (162)
..+++.+.+ ..||+| =.||+.-- ++++++++. ..+|||+=.--.+.+.+..|+++||+...+-
T Consensus 117 ~~~~~~i~~--~~PD~i---EiLPGi~p-~iI~~i~~~---~~~PiIaGGlI~~~edv~~al~aGA~aVsTs 179 (192)
T 3kts_A 117 NKGVALIQK--VQPDCI---ELLPGIIP-EQVQKMTQK---LHIPVIAGGLIETSEQVNQVIASGAIAVTTS 179 (192)
T ss_dssp HHHHHHHHH--HCCSEE---EEECTTCH-HHHHHHHHH---HCCCEEEESSCCSHHHHHHHHTTTEEEEEEC
T ss_pred HHHHHHHhh--cCCCEE---EECCchhH-HHHHHHHHh---cCCCEEEECCcCCHHHHHHHHHcCCeEEEeC
Confidence 346777887 789987 23577654 788999875 4789998777889999999999999988653
No 158
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=86.12 E-value=8 Score=28.14 Aligned_cols=80 Identities=18% Similarity=0.141 Sum_probs=54.7
Q ss_pred HHHHHHHHHhhCCCccEEE-EcCCCCC-CC--HHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeC---
Q 044790 9 GLQAWKILEDLMDQIDLVL-TEVLMPC-LS--GIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVK--- 81 (162)
Q Consensus 9 ~~eal~~l~~~~~~~Dlvl-lD~~mp~-~~--g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~K--- 81 (162)
..+.++.+.+ ..++.|+ .++.-.+ .. .++++++|++. ..+|||....-...+.+.++++.|+++++.=
T Consensus 153 ~~e~~~~~~~--~G~~~i~~~~~~~~g~~~g~~~~~~~~l~~~---~~ipvia~GGI~~~~d~~~~~~~Gadgv~vGsal 227 (253)
T 1thf_D 153 LRDWVVEVEK--RGAGEILLTSIDRDGTKSGYDTEMIRFVRPL---TTLPIIASGGAGKMEHFLEAFLAGADAALAASVF 227 (253)
T ss_dssp HHHHHHHHHH--TTCSEEEEEETTTTTSCSCCCHHHHHHHGGG---CCSCEEEESCCCSHHHHHHHHHTTCSEEEESHHH
T ss_pred HHHHHHHHHH--CCCCEEEEEeccCCCCCCCCCHHHHHHHHHh---cCCCEEEECCCCCHHHHHHHHHcCChHHHHHHHH
Confidence 4555566666 5677555 5554222 12 38889999864 3789999988888899999999999987643
Q ss_pred ---CCCHHHHHHHHH
Q 044790 82 ---PIRKNELQNLWQ 93 (162)
Q Consensus 82 ---P~~~~~L~~~i~ 93 (162)
|+++.++...++
T Consensus 228 ~~~~~~~~~~~~~l~ 242 (253)
T 1thf_D 228 HFREIDVRELKEYLK 242 (253)
T ss_dssp HTTCSCHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHH
Confidence 456666655543
No 159
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=85.77 E-value=1.8 Score=30.86 Aligned_cols=74 Identities=15% Similarity=0.208 Sum_probs=47.8
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCCCC--CCHHHHHHHHHccCCCCCCcEEE--EecCCCHHHHHHHHHcCCceEEeCCC
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLMPC--LSGIGLLRKIMNHKTCKNIPVIM--MSSHDSMSIVFKCLSKGAVYFLVKPI 83 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~mp~--~~g~~~~~~ir~~~~~~~~piI~--lt~~~~~~~~~~a~~~Ga~~~l~KP~ 83 (162)
+.+++++.++.....+|+|-+.+ |- ..|+++++.||+.. +.+||.+ +........+..+.++|++.++.-..
T Consensus 11 ~~~~~~~~~~~~~~~~diie~G~--p~~~~~g~~~i~~ir~~~--~~~~i~~~~~~~~~~~~~~~~~~~~Gad~v~v~~~ 86 (211)
T 3f4w_A 11 TLPEAMVFMDKVVDDVDIIEVGT--PFLIREGVNAIKAIKEKY--PHKEVLADAKIMDGGHFESQLLFDAGADYVTVLGV 86 (211)
T ss_dssp CHHHHHHHHHHHGGGCSEEEECH--HHHHHHTTHHHHHHHHHC--TTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETT
T ss_pred CHHHHHHHHHHhhcCccEEEeCc--HHHHhccHHHHHHHHHhC--CCCEEEEEEEeccchHHHHHHHHhcCCCEEEEeCC
Confidence 57788888776323466654443 42 45788999998763 4677643 22332333488999999999888654
Q ss_pred CH
Q 044790 84 RK 85 (162)
Q Consensus 84 ~~ 85 (162)
..
T Consensus 87 ~~ 88 (211)
T 3f4w_A 87 TD 88 (211)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 160
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=85.04 E-value=7.5 Score=29.37 Aligned_cols=80 Identities=10% Similarity=0.059 Sum_probs=54.2
Q ss_pred EEEEcCHHHHHHHHHhhCCCccEEEEcCC-C--CCCCHHHHHHHHHc-cCCCCCCcEEEEecCCCHHHHHHHHHcCCceE
Q 044790 3 VIAVENGLQAWKILEDLMDQIDLVLTEVL-M--PCLSGIGLLRKIMN-HKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYF 78 (162)
Q Consensus 3 v~~a~~~~eal~~l~~~~~~~DlvllD~~-m--p~~~g~~~~~~ir~-~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~ 78 (162)
+..+++.+|+...+. ..+|+|=+.-. + -..+ ++....|.. .+ ..+|+|.-++-..++.+.++.+.|++++
T Consensus 173 lvevh~~eEl~~A~~---~ga~iIGinnr~l~t~~~d-l~~~~~L~~~ip--~~~~vIaesGI~t~edv~~l~~~Ga~gv 246 (272)
T 3tsm_A 173 LIEVHDEAEMERALK---LSSRLLGVNNRNLRSFEVN-LAVSERLAKMAP--SDRLLVGESGIFTHEDCLRLEKSGIGTF 246 (272)
T ss_dssp EEEECSHHHHHHHTT---SCCSEEEEECBCTTTCCBC-THHHHHHHHHSC--TTSEEEEESSCCSHHHHHHHHTTTCCEE
T ss_pred EEEeCCHHHHHHHHh---cCCCEEEECCCCCccCCCC-hHHHHHHHHhCC--CCCcEEEECCCCCHHHHHHHHHcCCCEE
Confidence 457888888765554 46888866522 1 1122 444555543 33 4789999999989999999999999999
Q ss_pred Ee-----CCCCHHHH
Q 044790 79 LV-----KPIRKNEL 88 (162)
Q Consensus 79 l~-----KP~~~~~L 88 (162)
+. ++-++.+.
T Consensus 247 LVG~almr~~d~~~~ 261 (272)
T 3tsm_A 247 LIGESLMRQHDVAAA 261 (272)
T ss_dssp EECHHHHTSSCHHHH
T ss_pred EEcHHHcCCcCHHHH
Confidence 76 55555443
No 161
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=84.71 E-value=4.2 Score=30.00 Aligned_cols=69 Identities=14% Similarity=0.073 Sum_probs=48.9
Q ss_pred CHHHHHHHHHhhCCCccEEE-EcCCCCCC---CHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeC
Q 044790 8 NGLQAWKILEDLMDQIDLVL-TEVLMPCL---SGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVK 81 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~Dlvl-lD~~mp~~---~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~K 81 (162)
+..+..+.+.+ ...|.|. .|....+. .-+++++.|++. ..+||++...-...+.+..+++.|++..+.=
T Consensus 31 ~~~~~a~~~~~--~Ga~~i~v~d~~~~~~~~g~~~~~i~~i~~~---~~iPvi~~ggi~~~~~i~~~~~~Gad~v~lg 103 (266)
T 2w6r_A 31 LLRDWVVEVEK--RGAGEILLTSIDRDGTKSGYDTEMIRFVRPL---TTLPIIASGGAGKMEHFLEAFLAGADKALAA 103 (266)
T ss_dssp EHHHHHHHHHH--HTCSEEEEEETTTSSCSSCCCHHHHHHHGGG---CCSCEEEESCCCSTHHHHHHHHHTCSEEECC
T ss_pred CHHHHHHHHHH--CCCCEEEEEecCcccCCCcccHHHHHHHHHh---cCCCEEEECCCCCHHHHHHHHHcCCcHhhhh
Confidence 45566666666 5666555 56543321 127888888765 4799999888778888999999999998764
No 162
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=84.57 E-value=8.9 Score=27.88 Aligned_cols=69 Identities=13% Similarity=0.196 Sum_probs=47.7
Q ss_pred CHHHHHHHHHhhCCCccEEEE-cCCCCCC---CHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeC
Q 044790 8 NGLQAWKILEDLMDQIDLVLT-EVLMPCL---SGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVK 81 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~Dlvll-D~~mp~~---~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~K 81 (162)
+..+..+.+.+ ...|.|.+ |...... ..+++++.|++. ..+|+++-..-...+.+..+++.||+..+.=
T Consensus 31 d~~~~a~~~~~--~Gad~i~v~d~~~~~~~~~~~~~~i~~i~~~---~~ipvi~~ggI~~~~~~~~~~~~Gad~V~lg 103 (253)
T 1thf_D 31 DPVELGKFYSE--IGIDELVFLDITASVEKRKTMLELVEKVAEQ---IDIPFTVGGGIHDFETASELILRGADKVSIN 103 (253)
T ss_dssp CHHHHHHHHHH--TTCCEEEEEESSCSSSHHHHHHHHHHHHHTT---CCSCEEEESSCCSHHHHHHHHHTTCSEEEES
T ss_pred CHHHHHHHHHH--cCCCEEEEECCchhhcCCcccHHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 55666667776 67776554 4332221 124566777653 4799999888888899999999999988754
No 163
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=84.56 E-value=7.3 Score=27.82 Aligned_cols=71 Identities=11% Similarity=0.091 Sum_probs=49.0
Q ss_pred EEcCHHHHHHHHHhhCCCccEEEEcCC-----CC----CCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCC
Q 044790 5 AVENGLQAWKILEDLMDQIDLVLTEVL-----MP----CLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGA 75 (162)
Q Consensus 5 ~a~~~~eal~~l~~~~~~~DlvllD~~-----mp----~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga 75 (162)
.+.+..++.+... ...|+|.+... .. ...++++++++++. ..+|||....-...+.+.++++.|+
T Consensus 125 ~~~t~~e~~~~~~---~G~d~i~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~---~~ipvia~GGI~~~~~~~~~~~~Ga 198 (223)
T 1y0e_A 125 DIATVEEAKNAAR---LGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQS---VDAKVIAEGNVITPDMYKRVMDLGV 198 (223)
T ss_dssp ECSSHHHHHHHHH---TTCSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHH---CCSEEEEESSCCSHHHHHHHHHTTC
T ss_pred cCCCHHHHHHHHH---cCCCEEEeCCCcCcCCCCCCCCCcccHHHHHHHHhh---CCCCEEEecCCCCHHHHHHHHHcCC
Confidence 4456677766443 46788765321 01 12245678888764 3689998888878999999999999
Q ss_pred ceEEeC
Q 044790 76 VYFLVK 81 (162)
Q Consensus 76 ~~~l~K 81 (162)
+.++.=
T Consensus 199 d~v~vG 204 (223)
T 1y0e_A 199 HCSVVG 204 (223)
T ss_dssp SEEEEC
T ss_pred CEEEEC
Confidence 998653
No 164
>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}
Probab=84.51 E-value=6.5 Score=26.18 Aligned_cols=64 Identities=13% Similarity=0.147 Sum_probs=42.3
Q ss_pred CccEEEEcCCCCCCC------------------HHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCC
Q 044790 22 QIDLVLTEVLMPCLS------------------GIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPI 83 (162)
Q Consensus 22 ~~DlvllD~~mp~~~------------------g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~ 83 (162)
.+.+|++|+.=--.+ -.++++.+++ ..++++++|..........+-..|...|+..+.
T Consensus 8 ~~k~v~~DlDGTL~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~----~g~~~~i~T~~~~~~~~~~l~~~gl~~~~~~~k 83 (162)
T 2p9j_A 8 KLKLLIMDIDGVLTDGKLYYTEHGETIKVFNVLDGIGIKLLQK----MGITLAVISGRDSAPLITRLKELGVEEIYTGSY 83 (162)
T ss_dssp HCCEEEECCTTTTSCSEEEEETTEEEEEEEEHHHHHHHHHHHT----TTCEEEEEESCCCHHHHHHHHHTTCCEEEECC-
T ss_pred ceeEEEEecCcceECCceeecCCCceeeeecccHHHHHHHHHH----CCCEEEEEeCCCcHHHHHHHHHcCCHhhccCCC
Confidence 478899987522111 2377888876 468999999987776666666789998886543
Q ss_pred CHHHHH
Q 044790 84 RKNELQ 89 (162)
Q Consensus 84 ~~~~L~ 89 (162)
...+..
T Consensus 84 p~~~~~ 89 (162)
T 2p9j_A 84 KKLEIY 89 (162)
T ss_dssp -CHHHH
T ss_pred CCHHHH
Confidence 334433
No 165
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=84.45 E-value=5.4 Score=28.76 Aligned_cols=68 Identities=15% Similarity=0.168 Sum_probs=47.8
Q ss_pred CHHHHHHHHHhhCCCccEE-EEcCCCCCC---CHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 8 NGLQAWKILEDLMDQIDLV-LTEVLMPCL---SGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~Dlv-llD~~mp~~---~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
+..+..+.+.+ ..+|.| +.|...... ..+++++.+++. ..+|+++-......+.+..+++.|++.++.
T Consensus 34 ~~~~~a~~~~~--~G~d~i~v~~~~~~~~~~~~~~~~i~~i~~~---~~ipvi~~g~i~~~~~~~~~~~~Gad~V~i 105 (253)
T 1h5y_A 34 DPVEMAVRYEE--EGADEIAILDITAAPEGRATFIDSVKRVAEA---VSIPVLVGGGVRSLEDATTLFRAGADKVSV 105 (253)
T ss_dssp CHHHHHHHHHH--TTCSCEEEEECCCCTTTHHHHHHHHHHHHHH---CSSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred cHHHHHHHHHH--cCCCEEEEEeCCccccCCcccHHHHHHHHHh---cCCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 55666777777 678844 555433211 236677888764 368999888778888899999999998864
No 166
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=84.12 E-value=5 Score=30.64 Aligned_cols=69 Identities=12% Similarity=0.097 Sum_probs=48.2
Q ss_pred ccEEEE-cCCCCCCCH-HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHH
Q 044790 23 IDLVLT-EVLMPCLSG-IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHV 95 (162)
Q Consensus 23 ~Dlvll-D~~mp~~~g-~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~ 95 (162)
.|.|++ |-++--..| -+.+++.|+.. +..+|.+-.. ..+...+++++|++-.+...+++++|.+.++.+
T Consensus 169 ~d~vlikdNHi~~~G~i~~Av~~ar~~~--~~~~IeVEv~--tl~ea~eAl~aGaD~I~LDn~~~~~l~~av~~~ 239 (287)
T 3tqv_A 169 FDAYLIKENHIRSAGGIAKAVTKAKKLD--SNKVVEVEVT--NLDELNQAIAAKADIVMLDNFSGEDIDIAVSIA 239 (287)
T ss_dssp SSSEEECTTTC----CHHHHHHHHHHHC--TTSCEEEEES--SHHHHHHHHHTTCSEEEEESCCHHHHHHHHHHH
T ss_pred ccEEEEeHHHHHHhCCHHHHHHHHHhhC--CCCcEEEEeC--CHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHhh
Confidence 355555 433332223 35667777754 6788877554 558889999999999999999999999888764
No 167
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=84.08 E-value=7.3 Score=28.18 Aligned_cols=83 Identities=14% Similarity=0.170 Sum_probs=53.0
Q ss_pred HHHHHHHHhhCC--CccEEEEcCCCCCCCH-------HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 10 LQAWKILEDLMD--QIDLVLTEVLMPCLSG-------IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 10 ~eal~~l~~~~~--~~DlvllD~~mp~~~g-------~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
.+.++.+.. . ..|.|+++-..|+..| ++.++++|+.. ..+||++.-+-. .+.+.++.+.|+|.++.
T Consensus 126 ~e~~~~~~~--~~~~~d~vl~~sv~pg~~g~~~~~~~l~~i~~~~~~~--~~~pi~v~GGI~-~~ni~~~~~aGaD~vvv 200 (228)
T 1h1y_A 126 VEEVFPLVE--AENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKY--PSLDIEVDGGLG-PSTIDVAASAGANCIVA 200 (228)
T ss_dssp GGGGHHHHH--SSSCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHC--TTSEEEEESSCS-TTTHHHHHHHTCCEEEE
T ss_pred HHHHHHHHh--cCCCCCEEEEEeecCCCCcccCCHHHHHHHHHHHHhc--CCCCEEEECCcC-HHHHHHHHHcCCCEEEE
Confidence 344444443 3 6899999887776333 45567776653 377877666654 46778888899998865
Q ss_pred -----CCCCHHHHHHHHHHHHH
Q 044790 81 -----KPIRKNELQNLWQHVWR 97 (162)
Q Consensus 81 -----KP~~~~~L~~~i~~~l~ 97 (162)
+.-++.+-.+.+++.+.
T Consensus 201 Gsai~~~~d~~~~~~~l~~~~~ 222 (228)
T 1h1y_A 201 GSSIFGAAEPGEVISALRKSVE 222 (228)
T ss_dssp SHHHHTSSCHHHHHHHHHHHHH
T ss_pred CHHHHCCCCHHHHHHHHHHHHH
Confidence 33355555555555444
No 168
>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A
Probab=83.92 E-value=6.3 Score=29.42 Aligned_cols=71 Identities=17% Similarity=0.134 Sum_probs=47.5
Q ss_pred EEcCHHHHHHHHHhhCCCccEEEE-cCCC---CCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 5 AVENGLQAWKILEDLMDQIDLVLT-EVLM---PCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 5 ~a~~~~eal~~l~~~~~~~Dlvll-D~~m---p~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
++.+..++.+..+. ..|.|+. -... .+..+.+.++++++. ..+|||+...-...+.+.++++.||++++.
T Consensus 133 ~~~~~~~a~~~~~~---gad~v~~~~~~~Gt~~~~~~~~~l~~i~~~---~~iPviv~gGI~t~eda~~~~~~GAdgViV 206 (264)
T 1xm3_A 133 TSDDVVLARKLEEL---GVHAIMPGASPIGSGQGILNPLNLSFIIEQ---AKVPVIVDAGIGSPKDAAYAMELGADGVLL 206 (264)
T ss_dssp ECSCHHHHHHHHHH---TCSCBEECSSSTTCCCCCSCHHHHHHHHHH---CSSCBEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred cCCCHHHHHHHHHh---CCCEEEECCcccCCCCCCCCHHHHHHHHhc---CCCCEEEEeCCCCHHHHHHHHHcCCCEEEE
Confidence 44566555444433 4566532 1000 123347888999874 489999998888899999999999999875
Q ss_pred C
Q 044790 81 K 81 (162)
Q Consensus 81 K 81 (162)
=
T Consensus 207 G 207 (264)
T 1xm3_A 207 N 207 (264)
T ss_dssp S
T ss_pred c
Confidence 4
No 169
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=83.83 E-value=6.1 Score=28.62 Aligned_cols=79 Identities=13% Similarity=0.143 Sum_probs=54.1
Q ss_pred CHHHHHHHHHhhCCCccEE-EEcCCCCCC---CHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHc---CCceEEe
Q 044790 8 NGLQAWKILEDLMDQIDLV-LTEVLMPCL---SGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSK---GAVYFLV 80 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~Dlv-llD~~mp~~---~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~---Ga~~~l~ 80 (162)
+..+.++.+.+ ..++.| +.+....+. -.+++++++++. ..+|||....-...+.+.++++. |+++++.
T Consensus 150 ~~~e~~~~~~~--~G~~~i~~~~~~~~~~~~g~~~~~~~~l~~~---~~ipvia~GGI~~~~d~~~~~~~~~~Gad~v~v 224 (244)
T 2y88_A 150 DLWDVLERLDS--EGCSRFVVTDITKDGTLGGPNLDLLAGVADR---TDAPVIASGGVSSLDDLRAIATLTHRGVEGAIV 224 (244)
T ss_dssp EHHHHHHHHHH--TTCCCEEEEETTTTTTTSCCCHHHHHHHHTT---CSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEE
T ss_pred CHHHHHHHHHh--CCCCEEEEEecCCccccCCCCHHHHHHHHHh---CCCCEEEECCCCCHHHHHHHHhhccCCCCEEEE
Confidence 34566666666 567755 466554322 247888888864 47999999888888999999998 9998754
Q ss_pred ------CCCCHHHHHHH
Q 044790 81 ------KPIRKNELQNL 91 (162)
Q Consensus 81 ------KP~~~~~L~~~ 91 (162)
.|....++.+.
T Consensus 225 G~al~~~~~~~~~~~~~ 241 (244)
T 2y88_A 225 GKALYARRFTLPQALAA 241 (244)
T ss_dssp CHHHHTTSSCHHHHHHH
T ss_pred cHHHHCCCcCHHHHHHH
Confidence 35555555443
No 170
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=83.64 E-value=3 Score=30.00 Aligned_cols=47 Identities=13% Similarity=0.182 Sum_probs=31.2
Q ss_pred CCccEEEEcCCC-----CCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHH
Q 044790 21 DQIDLVLTEVLM-----PCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKC 70 (162)
Q Consensus 21 ~~~DlvllD~~m-----p~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a 70 (162)
..+|+||+|-.. .-.+--++++.|...+ ...-|| +|++..+....+.
T Consensus 119 ~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp--~~~~vI-lTGr~ap~~l~e~ 170 (196)
T 1g5t_A 119 PLLDMVVLDELTYMVAYDYLPLEEVISALNARP--GHQTVI-ITGRGCHRDILDL 170 (196)
T ss_dssp TTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSC--TTCEEE-EECSSCCHHHHHH
T ss_pred CCCCEEEEeCCCccccCCCCCHHHHHHHHHhCc--CCCEEE-EECCCCcHHHHHh
Confidence 579999999642 3355567889998765 566555 6666555555443
No 171
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=83.37 E-value=2.6 Score=31.43 Aligned_cols=61 Identities=13% Similarity=0.255 Sum_probs=46.8
Q ss_pred HhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCC
Q 044790 17 EDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPI 83 (162)
Q Consensus 17 ~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~ 83 (162)
.. +.||++|+=.--|..-|-.-.|.+-.. .++|.|+++...... ...+++..-.+||.-+.
T Consensus 61 ~~--~~pDfvI~isPN~a~PGP~~ARE~l~~---~~iP~IvI~D~p~~K-~kd~l~~~g~GYIivk~ 121 (283)
T 1qv9_A 61 ED--FEPDFIVYGGPNPAAPGPSKAREMLAD---SEYPAVIIGDAPGLK-VKDEMEEQGLGYILVKP 121 (283)
T ss_dssp HH--HCCSEEEEECSCTTSHHHHHHHHHHHT---SSSCEEEEEEGGGGG-GHHHHHHTTCEEEEETT
T ss_pred hh--cCCCEEEEECCCCCCCCchHHHHHHHh---CCCCEEEEcCCcchh-hHHHHHhcCCcEEEEec
Confidence 55 899999998888888998888887654 589999999866555 55777776677765443
No 172
>3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482}
Probab=83.30 E-value=3.3 Score=29.69 Aligned_cols=69 Identities=10% Similarity=-0.011 Sum_probs=47.8
Q ss_pred EEcCHHHHHHHHHhhCCCccEEEEcCCCCC--------CCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCc
Q 044790 5 AVENGLQAWKILEDLMDQIDLVLTEVLMPC--------LSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAV 76 (162)
Q Consensus 5 ~a~~~~eal~~l~~~~~~~DlvllD~~mp~--------~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~ 76 (162)
.+.+..|+.+.. . ..|.|+++-..|. .-|++.+++++..- ...+||+.+.+-. .+.+.++++.|++
T Consensus 94 s~~t~~e~~~A~-~---GaDyv~~g~vf~t~sk~~~~~~~g~~~l~~~~~~~-~~~iPviaiGGI~-~~nv~~~~~~Ga~ 167 (210)
T 3ceu_A 94 SCHSVEEVKNRK-H---FYDYVFMSPIYDSISKVNYYSTYTAEELREAQKAK-IIDSKVMALGGIN-EDNLLEIKDFGFG 167 (210)
T ss_dssp EECSHHHHHTTG-G---GSSEEEECCCC---------CCCCHHHHHHHHHTT-CSSTTEEEESSCC-TTTHHHHHHTTCS
T ss_pred ecCCHHHHHHHh-h---CCCEEEECCcCCCCCCCCCCCCCCHHHHHHHHHhc-CCCCCEEEECCCC-HHHHHHHHHhCCC
Confidence 567787876553 3 5899988764332 23678888887531 0368999888765 6778899999999
Q ss_pred eEE
Q 044790 77 YFL 79 (162)
Q Consensus 77 ~~l 79 (162)
++-
T Consensus 168 gVa 170 (210)
T 3ceu_A 168 GAV 170 (210)
T ss_dssp EEE
T ss_pred EEE
Confidence 873
No 173
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=82.81 E-value=3.7 Score=29.38 Aligned_cols=69 Identities=13% Similarity=0.065 Sum_probs=45.7
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCCCC-CCH-HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeC
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLMPC-LSG-IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVK 81 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~mp~-~~g-~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~K 81 (162)
..++.++.+.+ ..||+|.+...+.. +.. -++++.||+....+++||++-......+. +.+.|++.|..-
T Consensus 127 p~~~l~~~~~~--~~~d~v~lS~~~~~~~~~~~~~i~~l~~~~~~~~~~v~vGG~~~~~~~---~~~~gad~~~~d 197 (210)
T 1y80_A 127 EPGKFVEAVKK--YQPDIVGMSALLTTTMMNMKSTIDALIAAGLRDRVKVIVGGAPLSQDF---ADEIGADGYAPD 197 (210)
T ss_dssp CHHHHHHHHHH--HCCSEEEEECCSGGGTHHHHHHHHHHHHTTCGGGCEEEEESTTCCHHH---HHHHTCSEECSS
T ss_pred CHHHHHHHHHH--cCCCEEEEeccccccHHHHHHHHHHHHhcCCCCCCeEEEECCCCCHHH---HHHcCCeEEECC
Confidence 46677777877 78999999987754 222 44567777653224588877666655543 355799877644
No 174
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=82.75 E-value=5.5 Score=30.63 Aligned_cols=53 Identities=17% Similarity=0.193 Sum_probs=43.6
Q ss_pred HHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHH
Q 044790 39 GLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHV 95 (162)
Q Consensus 39 ~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~ 95 (162)
+.++++|+.. +..+|.+-.. ..+...+++++|+|-.+...++++++.+.+..+
T Consensus 196 ~Av~~ar~~~--p~~kIeVEv~--tl~e~~eAl~aGaDiImLDn~s~~~l~~av~~~ 248 (300)
T 3l0g_A 196 LAIQRLRKNL--KNEYIAIECD--NISQVEESLSNNVDMILLDNMSISEIKKAVDIV 248 (300)
T ss_dssp HHHHHHHHHS--SSCCEEEEES--SHHHHHHHHHTTCSEEEEESCCHHHHHHHHHHH
T ss_pred HHHHHHHHhC--CCCCEEEEEC--CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHhh
Confidence 5567777654 6788887665 468899999999999999999999999998764
No 175
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=82.71 E-value=6.3 Score=31.08 Aligned_cols=66 Identities=12% Similarity=0.053 Sum_probs=45.6
Q ss_pred HHHHHHHHhhCCCccEEEEcCCCCCCC-HHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 10 LQAWKILEDLMDQIDLVLTEVLMPCLS-GIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 10 ~eal~~l~~~~~~~DlvllD~~mp~~~-g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
.+.++.+.+ ..+|+|.+|....... -.+.++++++.. +.++||+-+ -...+.+..+.++|++.+..
T Consensus 110 ~~~~~~lie--aGvd~I~idta~G~~~~~~~~I~~ik~~~--p~v~Vi~G~-v~t~e~A~~a~~aGAD~I~v 176 (366)
T 4fo4_A 110 EERVKALVE--AGVDVLLIDSSHGHSEGVLQRIRETRAAY--PHLEIIGGN-VATAEGARALIEAGVSAVKV 176 (366)
T ss_dssp HHHHHHHHH--TTCSEEEEECSCTTSHHHHHHHHHHHHHC--TTCEEEEEE-ECSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHh--CCCCEEEEeCCCCCCHHHHHHHHHHHHhc--CCCceEeee-eCCHHHHHHHHHcCCCEEEE
Confidence 455566666 6899999986543222 246678887754 678877532 23577888899999998887
No 176
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=82.53 E-value=5.6 Score=29.40 Aligned_cols=61 Identities=18% Similarity=0.271 Sum_probs=43.3
Q ss_pred HHHHHHHHhhCCCccEEEEcCCCCCCC---HHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCC
Q 044790 10 LQAWKILEDLMDQIDLVLTEVLMPCLS---GIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPI 83 (162)
Q Consensus 10 ~eal~~l~~~~~~~DlvllD~~mp~~~---g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~ 83 (162)
.++++.+.+ ...|+|.+... -+++ -+++++++|+ ..+|+|+++...+. +..|+|++|..-+
T Consensus 23 ~~~~~~l~~--~GaD~IelG~S-~g~t~~~~~~~v~~ir~----~~~Pivl~~y~~n~------i~~gvDg~iipdL 86 (234)
T 2f6u_A 23 DEIIKAVAD--SGTDAVMISGT-QNVTYEKARTLIEKVSQ----YGLPIVVEPSDPSN------VVYDVDYLFVPTV 86 (234)
T ss_dssp HHHHHHHHT--TTCSEEEECCC-TTCCHHHHHHHHHHHTT----SCCCEEECCSSCCC------CCCCSSEEEEEEE
T ss_pred HHHHHHHHH--cCCCEEEECCC-CCCCHHHHHHHHHHhcC----CCCCEEEecCCcch------hhcCCCEEEEccc
Confidence 456777777 78999999984 2233 3556666654 47999999987432 2789999988743
No 177
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Probab=82.52 E-value=11 Score=29.04 Aligned_cols=70 Identities=20% Similarity=0.137 Sum_probs=51.3
Q ss_pred EEcCHHHHHHHHHhhCCCccEEEEcC-CCCC----CCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEE
Q 044790 5 AVENGLQAWKILEDLMDQIDLVLTEV-LMPC----LSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFL 79 (162)
Q Consensus 5 ~a~~~~eal~~l~~~~~~~DlvllD~-~mp~----~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l 79 (162)
.+.+.+++....+ ..+|.|+++- .-.+ ...+++++.++.. ..+|||+-..-.+.+.+.+++..|++++.
T Consensus 130 ~v~s~~~a~~a~~---~GaD~i~v~g~~~GG~~G~~~~~~ll~~i~~~---~~iPviaaGGI~~~~dv~~al~~GA~gV~ 203 (326)
T 3bo9_A 130 VVASDSLARMVER---AGADAVIAEGMESGGHIGEVTTFVLVNKVSRS---VNIPVIAAGGIADGRGMAAAFALGAEAVQ 203 (326)
T ss_dssp EESSHHHHHHHHH---TTCSCEEEECTTSSEECCSSCHHHHHHHHHHH---CSSCEEEESSCCSHHHHHHHHHHTCSEEE
T ss_pred EcCCHHHHHHHHH---cCCCEEEEECCCCCccCCCccHHHHHHHHHHH---cCCCEEEECCCCCHHHHHHHHHhCCCEEE
Confidence 4567777766544 4689888853 2222 3567888888764 37899988888889999999999999875
Q ss_pred e
Q 044790 80 V 80 (162)
Q Consensus 80 ~ 80 (162)
.
T Consensus 204 v 204 (326)
T 3bo9_A 204 M 204 (326)
T ss_dssp E
T ss_pred e
Confidence 3
No 178
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A
Probab=82.45 E-value=11 Score=26.92 Aligned_cols=86 Identities=7% Similarity=-0.001 Sum_probs=61.9
Q ss_pred EEcCHHHHHHHHHhhCCCccEEEEcCCCCC-C-CHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEE---
Q 044790 5 AVENGLQAWKILEDLMDQIDLVLTEVLMPC-L-SGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFL--- 79 (162)
Q Consensus 5 ~a~~~~eal~~l~~~~~~~DlvllD~~mp~-~-~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l--- 79 (162)
-+.+..|+.+..+. ..|.|-+ .|. . -|.+.++.++... +++|++.+-.-. .+.+.+.+..|++.+.
T Consensus 110 G~~t~~e~~~A~~~---Gad~v~~---fpa~~~gG~~~lk~l~~~~--~~ipvvaiGGI~-~~n~~~~l~aGa~~vavgS 180 (207)
T 2yw3_A 110 GVLTPTEVERALAL---GLSALKF---FPAEPFQGVRVLRAYAEVF--PEVRFLPTGGIK-EEHLPHYAALPNLLAVGGS 180 (207)
T ss_dssp EECSHHHHHHHHHT---TCCEEEE---TTTTTTTHHHHHHHHHHHC--TTCEEEEBSSCC-GGGHHHHHTCSSBSCEEES
T ss_pred cCCCHHHHHHHHHC---CCCEEEE---ecCccccCHHHHHHHHhhC--CCCcEEEeCCCC-HHHHHHHHhCCCcEEEEeh
Confidence 46788888777654 6898877 342 2 3889999998754 689998776654 6788899999998764
Q ss_pred --eCCCCHHHHHHHHHHHHHhcc
Q 044790 80 --VKPIRKNELQNLWQHVWRKCH 100 (162)
Q Consensus 80 --~KP~~~~~L~~~i~~~l~~~~ 100 (162)
.+ -+.+++.++.++++....
T Consensus 181 ai~~-~d~~~i~~~a~~~~~~~~ 202 (207)
T 2yw3_A 181 WLLQ-GNLEAVRAKVRAAKALLS 202 (207)
T ss_dssp GGGS-SCHHHHHHHHHHHHHHC-
T ss_pred hhhC-CCHHHHHHHHHHHHHHhc
Confidence 33 566678888887766543
No 179
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=82.36 E-value=8.4 Score=28.59 Aligned_cols=81 Identities=5% Similarity=0.021 Sum_probs=53.9
Q ss_pred cCHHHHHHHHHhhCCCccEEEEcCCCCC-CCH-HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCC
Q 044790 7 ENGLQAWKILEDLMDQIDLVLTEVLMPC-LSG-IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIR 84 (162)
Q Consensus 7 ~~~~eal~~l~~~~~~~DlvllD~~mp~-~~g-~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~ 84 (162)
...++.++.+.+ ..||+|.+...+.. +.. -++++.|++.. +.+||++-......+. +...|++.|..-.
T Consensus 161 vp~e~l~~~~~~--~~~d~V~lS~l~~~~~~~~~~~i~~l~~~~--~~~~v~vGG~~~~~~~---~~~igad~~~~da-- 231 (258)
T 2i2x_B 161 VPAEEVLAAVQK--EKPIMLTGTALMTTTMYAFKEVNDMLLENG--IKIPFACGGGAVNQDF---VSQFALGVYGEEA-- 231 (258)
T ss_dssp CCSHHHHHHHHH--HCCSEEEEECCCTTTTTHHHHHHHHHHTTT--CCCCEEEESTTCCHHH---HHTSTTEEECSST--
T ss_pred CCHHHHHHHHHH--cCCCEEEEEeeccCCHHHHHHHHHHHHhcC--CCCcEEEECccCCHHH---HHHcCCeEEECCH--
Confidence 356677788887 78999999987754 333 45678888755 5688776665555443 3478988776543
Q ss_pred HHHHHHHHHHHHH
Q 044790 85 KNELQNLWQHVWR 97 (162)
Q Consensus 85 ~~~L~~~i~~~l~ 97 (162)
.+....++.++.
T Consensus 232 -~~av~~~~~l~~ 243 (258)
T 2i2x_B 232 -ADAPKIADAIIA 243 (258)
T ss_dssp -THHHHHHHHHHT
T ss_pred -HHHHHHHHHHHc
Confidence 555555555554
No 180
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Probab=82.24 E-value=8.3 Score=28.12 Aligned_cols=69 Identities=13% Similarity=0.085 Sum_probs=49.6
Q ss_pred CHHHHHHHHHhhCCCccEEE-EcCCCC---CCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeC
Q 044790 8 NGLQAWKILEDLMDQIDLVL-TEVLMP---CLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVK 81 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~Dlvl-lD~~mp---~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~K 81 (162)
+..+..+.+.+ ..+|.|. .|+.-. ...-+++++.|++. ..+||++-..-.+.+.+..+++.|++..+.=
T Consensus 36 ~~~~~a~~~~~--~G~~~i~v~d~~~~~~~~~~~~~~i~~i~~~---~~ipvi~~Ggi~~~~~~~~~l~~Gad~V~ig 108 (247)
T 3tdn_A 36 LLRDWVVEVEK--RGAGEILLTSIDRDGTKSGYDTEMIRFVRPL---TTLPIIASGGAGKMEHFLEAFLRGADKVSIN 108 (247)
T ss_dssp EHHHHHHHHHH--TTCSEEEEEETTTTTCSSCCCHHHHHHHGGG---CCSCEEEESCCCSHHHHHHHHHTTCSEECCS
T ss_pred CHHHHHHHHHH--cCCCEEEEEecCcccCCCcccHHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHHHcCCCeeehh
Confidence 45566666776 6777554 465422 12236888888865 4799999988888999999999999987643
No 181
>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9
Probab=81.93 E-value=8.7 Score=29.27 Aligned_cols=76 Identities=12% Similarity=0.074 Sum_probs=49.6
Q ss_pred EEEEEcCHHHHHHHHHhhCCCccEEEEcCCCC--CCCH----------HHHH----HHHHccCCCCCCcEEEEe-cCCCH
Q 044790 2 AVIAVENGLQAWKILEDLMDQIDLVLTEVLMP--CLSG----------IGLL----RKIMNHKTCKNIPVIMMS-SHDSM 64 (162)
Q Consensus 2 ~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp--~~~g----------~~~~----~~ir~~~~~~~~piI~lt-~~~~~ 64 (162)
.+.++.+.++|..+... .+|+|++..-+- +.-| .+.+ +.+++.. +++.|+.-. .-..+
T Consensus 166 Ti~~v~~~eeA~amA~a---gpDiI~~h~glT~gglIG~~~avs~~~~~e~i~~i~~a~~~vn--pdvivLc~gGpIstp 240 (286)
T 2p10_A 166 TTPYVFSPEDAVAMAKA---GADILVCHMGLTTGGAIGARSGKSMDDCVSLINECIEAARTIR--DDIIILSHGGPIANP 240 (286)
T ss_dssp ECCEECSHHHHHHHHHH---TCSEEEEECSCC---------CCCHHHHHHHHHHHHHHHHHHC--SCCEEEEESTTCCSH
T ss_pred EEEecCCHHHHHHHHHc---CCCEEEECCCCCCCCcccCCCcccHHHhHHHHHHHHHHHHHhC--CCcEEEecCCCCCCH
Confidence 45688899999888765 789999876531 2222 2222 3334444 566444434 34688
Q ss_pred HHHHHHHHc--CCceEEeCC
Q 044790 65 SIVFKCLSK--GAVYFLVKP 82 (162)
Q Consensus 65 ~~~~~a~~~--Ga~~~l~KP 82 (162)
+++..+++. |+++|+.-.
T Consensus 241 eDv~~~l~~t~G~~G~~gAS 260 (286)
T 2p10_A 241 EDARFILDSCQGCHGFYGAS 260 (286)
T ss_dssp HHHHHHHHHCTTCCEEEESH
T ss_pred HHHHHHHhcCCCccEEEeeh
Confidence 999999998 999998763
No 182
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*
Probab=81.65 E-value=17 Score=28.33 Aligned_cols=69 Identities=16% Similarity=0.138 Sum_probs=50.3
Q ss_pred EEcCHHHHHHHHHhhCCCccEEEEcCC---------CC-----C--CCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHH
Q 044790 5 AVENGLQAWKILEDLMDQIDLVLTEVL---------MP-----C--LSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVF 68 (162)
Q Consensus 5 ~a~~~~eal~~l~~~~~~~DlvllD~~---------mp-----~--~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~ 68 (162)
.+.+..++..... ..+|.|+++-. .+ . ...+++++.++.. ..+|||+...-.+.+.+.
T Consensus 151 ~v~t~~~a~~a~~---~GaD~i~v~g~~~GGh~g~~~~~~~~~~~~~~~~~~l~~i~~~---~~iPViaaGGI~~~~~~~ 224 (369)
T 3bw2_A 151 TATTPEEARAVEA---AGADAVIAQGVEAGGHQGTHRDSSEDDGAGIGLLSLLAQVREA---VDIPVVAAGGIMRGGQIA 224 (369)
T ss_dssp EESSHHHHHHHHH---TTCSEEEEECTTCSEECCCSSCCGGGTTCCCCHHHHHHHHHHH---CSSCEEEESSCCSHHHHH
T ss_pred ECCCHHHHHHHHH---cCCCEEEEeCCCcCCcCCCcccccccccccccHHHHHHHHHHh---cCceEEEECCCCCHHHHH
Confidence 4567777665544 46899998531 11 0 2348888888764 378999888877899999
Q ss_pred HHHHcCCceEE
Q 044790 69 KCLSKGAVYFL 79 (162)
Q Consensus 69 ~a~~~Ga~~~l 79 (162)
+++..|++.+.
T Consensus 225 ~~l~~GAd~V~ 235 (369)
T 3bw2_A 225 AVLAAGADAAQ 235 (369)
T ss_dssp HHHHTTCSEEE
T ss_pred HHHHcCCCEEE
Confidence 99999998875
No 183
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=81.47 E-value=6 Score=28.72 Aligned_cols=80 Identities=15% Similarity=0.158 Sum_probs=53.4
Q ss_pred CHHHHHHHHHhhCCCcc-EEEEcCCCCCC---CHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHc---CCceEEe
Q 044790 8 NGLQAWKILEDLMDQID-LVLTEVLMPCL---SGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSK---GAVYFLV 80 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~D-lvllD~~mp~~---~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~---Ga~~~l~ 80 (162)
+..+..+.+.+ ..++ ++++++.-.+. -.++++++|++. ..+|||....-...+.+.++++. |+++++.
T Consensus 147 ~~~e~~~~~~~--~G~~~i~~~~~~~~~~~~g~~~~~~~~i~~~---~~ipvia~GGI~~~~d~~~~~~~~~~Gadgv~v 221 (244)
T 1vzw_A 147 DLYETLDRLNK--EGCARYVVTDIAKDGTLQGPNLELLKNVCAA---TDRPVVASGGVSSLDDLRAIAGLVPAGVEGAIV 221 (244)
T ss_dssp BHHHHHHHHHH--TTCCCEEEEEC-------CCCHHHHHHHHHT---CSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEE
T ss_pred CHHHHHHHHHh--CCCCEEEEeccCcccccCCCCHHHHHHHHHh---cCCCEEEECCCCCHHHHHHHHhhccCCCceeee
Confidence 45565566666 5677 44566543221 237888999864 37999999888888999999999 9998764
Q ss_pred ------CCCCHHHHHHHH
Q 044790 81 ------KPIRKNELQNLW 92 (162)
Q Consensus 81 ------KP~~~~~L~~~i 92 (162)
.|++..++...+
T Consensus 222 G~al~~~~~~~~~~~~~~ 239 (244)
T 1vzw_A 222 GKALYAKAFTLEEALEAT 239 (244)
T ss_dssp CHHHHTTSSCHHHHHHHH
T ss_pred eHHHHcCCCCHHHHHHHh
Confidence 355655555443
No 184
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=80.84 E-value=3.8 Score=30.04 Aligned_cols=83 Identities=14% Similarity=0.043 Sum_probs=54.6
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCCCC-----CCHHHHHHHHHcc-CCCCCCcEE--EEecCCCHHHHHHHHHcCCceEE
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLMPC-----LSGIGLLRKIMNH-KTCKNIPVI--MMSSHDSMSIVFKCLSKGAVYFL 79 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~mp~-----~~g~~~~~~ir~~-~~~~~~piI--~lt~~~~~~~~~~a~~~Ga~~~l 79 (162)
+-.+.++.+.+ ...|.+-+|++... .-|.++++.||.. . +.+|+. ++.. ....++..+.++|++.+.
T Consensus 18 ~l~~~i~~l~~--~g~d~~h~DVmDg~Fvpn~~~G~~~v~~ir~~~~--~~~~~dvhLmv~-~p~~~i~~~~~aGad~it 92 (228)
T 3ovp_A 18 NLGAECLRMLD--SGADYLHLDVMDGHFVPNITFGHPVVESLRKQLG--QDPFFDMHMMVS-KPEQWVKPMAVAGANQYT 92 (228)
T ss_dssp GHHHHHHHHHH--TTCSCEEEEEEBSSSSSCBCBCHHHHHHHHHHHC--SSSCEEEEEECS-CGGGGHHHHHHHTCSEEE
T ss_pred hHHHHHHHHHH--cCCCEEEEEecCCCcCcccccCHHHHHHHHHhhC--CCCcEEEEEEeC-CHHHHHHHHHHcCCCEEE
Confidence 45678888887 67888888775432 3588999999876 1 244544 3443 334567888899999887
Q ss_pred eCCCCHHHHHHHHHHH
Q 044790 80 VKPIRKNELQNLWQHV 95 (162)
Q Consensus 80 ~KP~~~~~L~~~i~~~ 95 (162)
.-......+.+.++.+
T Consensus 93 vH~Ea~~~~~~~i~~i 108 (228)
T 3ovp_A 93 FHLEATENPGALIKDI 108 (228)
T ss_dssp EEGGGCSCHHHHHHHH
T ss_pred EccCCchhHHHHHHHH
Confidence 6554334455555544
No 185
>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}
Probab=80.53 E-value=6.3 Score=30.10 Aligned_cols=85 Identities=16% Similarity=0.071 Sum_probs=57.6
Q ss_pred EEEcCHHHHHHHHHhhCCCccEEEEcCC--CCCC-CHHHHHHHHHccCCCCCCcEEEEecCCCH-------------HHH
Q 044790 4 IAVENGLQAWKILEDLMDQIDLVLTEVL--MPCL-SGIGLLRKIMNHKTCKNIPVIMMSSHDSM-------------SIV 67 (162)
Q Consensus 4 ~~a~~~~eal~~l~~~~~~~DlvllD~~--mp~~-~g~~~~~~ir~~~~~~~~piI~lt~~~~~-------------~~~ 67 (162)
+++.+...++...+. . .|-|=++-. .++. .++.+++.+++. ..+||.++...... +++
T Consensus 44 vc~~s~~~a~~A~~g--G-AdRIELc~~l~~GGlTPS~g~i~~a~~~---~~ipV~vMIRPRgGdF~Ys~~E~~~M~~dI 117 (287)
T 3iwp_A 44 VCVDSVESAVNAERG--G-ADRIELCSGLSEGGTTPSMGVLQVVKQS---VQIPVFVMIRPRGGDFLYSDREIEVMKADI 117 (287)
T ss_dssp EEESSHHHHHHHHHH--T-CSEEEECBCGGGTCBCCCHHHHHHHHTT---CCSCEEEECCSSSSCSCCCHHHHHHHHHHH
T ss_pred EEeCCHHHHHHHHHh--C-CCEEEECCCCCCCCCCCCHHHHHHHHHh---cCCCeEEEEecCCCCcccCHHHHHHHHHHH
Confidence 367888888888776 3 344433333 3443 468889999875 36999888866544 578
Q ss_pred HHHHHcCCceEEeC---C---CCHHHHHHHHHH
Q 044790 68 FKCLSKGAVYFLVK---P---IRKNELQNLWQH 94 (162)
Q Consensus 68 ~~a~~~Ga~~~l~K---P---~~~~~L~~~i~~ 94 (162)
..+.++|+++++.= | ++.+.+...|..
T Consensus 118 ~~~~~~GAdGvVfG~L~~dg~iD~~~~~~Li~~ 150 (287)
T 3iwp_A 118 RLAKLYGADGLVFGALTEDGHIDKELCMSLMAI 150 (287)
T ss_dssp HHHHHTTCSEEEECCBCTTSCBCHHHHHHHHHH
T ss_pred HHHHHcCCCEEEEeeeCCCCCcCHHHHHHHHHH
Confidence 88999999999765 2 455555555543
No 186
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=80.35 E-value=6.9 Score=32.66 Aligned_cols=64 Identities=17% Similarity=0.149 Sum_probs=46.6
Q ss_pred HHHHHHHhhCCCccEEEEcCCCCCCCH-HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEE
Q 044790 11 QAWKILEDLMDQIDLVLTEVLMPCLSG-IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFL 79 (162)
Q Consensus 11 eal~~l~~~~~~~DlvllD~~mp~~~g-~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l 79 (162)
+-.+.|-+ ...|+|++|........ ++++++|+... +.++||. ..-...+.....+++|||...
T Consensus 284 eR~~aLv~--AGvD~iviD~ahGhs~~v~~~i~~ik~~~--p~~~via-GNVaT~e~a~~Li~aGAD~vk 348 (556)
T 4af0_A 284 DRLKLLAE--AGLDVVVLDSSQGNSVYQIEFIKWIKQTY--PKIDVIA-GNVVTREQAAQLIAAGADGLR 348 (556)
T ss_dssp HHHHHHHH--TTCCEEEECCSCCCSHHHHHHHHHHHHHC--TTSEEEE-EEECSHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHh--cCCcEEEEeccccccHHHHHHHHHHHhhC--CcceEEe-ccccCHHHHHHHHHcCCCEEe
Confidence 33444555 67999999998766544 77889998865 7887764 444567777888899999874
No 187
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=80.22 E-value=20 Score=28.59 Aligned_cols=73 Identities=16% Similarity=0.110 Sum_probs=50.6
Q ss_pred EEcCHHHHHHHHHhhCCCccEEEEcCCC-----------CCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHc
Q 044790 5 AVENGLQAWKILEDLMDQIDLVLTEVLM-----------PCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSK 73 (162)
Q Consensus 5 ~a~~~~eal~~l~~~~~~~DlvllD~~m-----------p~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~ 73 (162)
.+.+.++|..+.+ ..+|.|++.+.- .+...+.++..+........+|||.-..-.....+.+++.+
T Consensus 191 ~V~t~e~A~~a~~---aGAD~I~vG~g~Gs~~~tr~~~g~g~p~~~al~~v~~~~~~~~IPVIA~GGI~~~~di~kalal 267 (400)
T 3ffs_A 191 NVVTEEATKELIE---NGADGIKVGIGPGSICTTRIVAGVGVPQITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAV 267 (400)
T ss_dssp EECSHHHHHHHHH---TTCSEEEECC---------CCSCBCCCHHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHTT
T ss_pred ecCCHHHHHHHHH---cCCCEEEEeCCCCcCcccccccccchhHHHHHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHc
Confidence 4678888877655 478999884210 11234566666654211147999988888889999999999
Q ss_pred CCceEEe
Q 044790 74 GAVYFLV 80 (162)
Q Consensus 74 Ga~~~l~ 80 (162)
||+....
T Consensus 268 GAd~V~v 274 (400)
T 3ffs_A 268 GASSVMI 274 (400)
T ss_dssp TCSEEEE
T ss_pred CCCEEEE
Confidence 9998753
No 188
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=80.18 E-value=14 Score=28.27 Aligned_cols=62 Identities=15% Similarity=0.071 Sum_probs=47.0
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeC
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVK 81 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~K 81 (162)
+..+.++.+.+ ..+|+|.+....| .+++++++.. .++++... ...+....+.+.|++.++.-
T Consensus 84 ~~~~~~~~~~~--~g~d~V~~~~g~p----~~~~~~l~~~----gi~vi~~v--~t~~~a~~~~~~GaD~i~v~ 145 (328)
T 2gjl_A 84 PYAEYRAAIIE--AGIRVVETAGNDP----GEHIAEFRRH----GVKVIHKC--TAVRHALKAERLGVDAVSID 145 (328)
T ss_dssp CHHHHHHHHHH--TTCCEEEEEESCC----HHHHHHHHHT----TCEEEEEE--SSHHHHHHHHHTTCSEEEEE
T ss_pred cHHHHHHHHHh--cCCCEEEEcCCCc----HHHHHHHHHc----CCCEEeeC--CCHHHHHHHHHcCCCEEEEE
Confidence 34577788877 7899999987766 5788888763 57777543 35677888999999999874
No 189
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=80.12 E-value=7.7 Score=29.81 Aligned_cols=67 Identities=16% Similarity=0.167 Sum_probs=47.0
Q ss_pred EEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEE
Q 044790 3 VIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFL 79 (162)
Q Consensus 3 v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l 79 (162)
.+.+++.+|+.+.+.. ..|+|++|-.-| -++-+.++... .. ..|..++.-..+.+....+.|+|-+-
T Consensus 211 eVEv~tl~e~~eAl~a---GaDiImLDn~s~----~~l~~av~~~~--~~-v~leaSGGIt~~~i~~~A~tGVD~Is 277 (300)
T 3l0g_A 211 AIECDNISQVEESLSN---NVDMILLDNMSI----SEIKKAVDIVN--GK-SVLEVSGCVNIRNVRNIALTGVDYIS 277 (300)
T ss_dssp EEEESSHHHHHHHHHT---TCSEEEEESCCH----HHHHHHHHHHT--TS-SEEEEESSCCTTTHHHHHTTTCSEEE
T ss_pred EEEECCHHHHHHHHHc---CCCEEEECCCCH----HHHHHHHHhhc--Cc-eEEEEECCCCHHHHHHHHHcCCCEEE
Confidence 3578899999999886 689999995333 33333333322 23 46778888888888888899998664
No 190
>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1
Probab=80.06 E-value=5.3 Score=29.61 Aligned_cols=63 Identities=13% Similarity=0.190 Sum_probs=43.1
Q ss_pred HHHHHHHHhhCCCccEEEEcCCCCCCC---HHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCH
Q 044790 10 LQAWKILEDLMDQIDLVLTEVLMPCLS---GIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRK 85 (162)
Q Consensus 10 ~eal~~l~~~~~~~DlvllD~~mp~~~---g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~ 85 (162)
.++++.+.+ ...|+|.+... -++. .++++++||+ ..+|||+++...+. +..|+++||..-+..
T Consensus 23 ~~~~~~l~~--~GaD~ielG~S-~Gvt~~~~~~~v~~ir~----~~~Pivlm~y~~n~------i~~G~dg~iiPdLp~ 88 (240)
T 1viz_A 23 DEQLEILCE--SGTDAVIIGGS-DGVTEDNVLRMMSKVRR----FLVPCVLEVSAIEA------IVPGFDLYFIPSVLN 88 (240)
T ss_dssp HHHHHHHHT--SCCSEEEECC-----CHHHHHHHHHHHTT----SSSCEEEECSCGGG------CCSCCSEEEEEEETT
T ss_pred HHHHHHHHH--cCCCEEEECCC-CCCCHHHHHHHHHHhhC----cCCCEEEecCcccc------ccCCCCEEEEcccCc
Confidence 466777777 78999999873 2222 4566677765 47999999986422 277999999874433
No 191
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=79.57 E-value=12 Score=30.63 Aligned_cols=67 Identities=12% Similarity=0.077 Sum_probs=48.5
Q ss_pred HHHHHHHHHhhCCCccEEEEcCCCCCCCH-HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 9 GLQAWKILEDLMDQIDLVLTEVLMPCLSG-IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 9 ~~eal~~l~~~~~~~DlvllD~~mp~~~g-~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
..+..+.+.+ ..+|+|.+|........ +++++++++.- +.+||++-.. ...+.+..+.++|++.+..
T Consensus 256 ~~~~a~~~~~--aG~d~v~i~~~~G~~~~~~~~i~~i~~~~--~~~pvi~~~v-~t~~~a~~l~~aGad~I~v 323 (514)
T 1jcn_A 256 DKYRLDLLTQ--AGVDVIVLDSSQGNSVYQIAMVHYIKQKY--PHLQVIGGNV-VTAAQAKNLIDAGVDGLRV 323 (514)
T ss_dssp HHHHHHHHHH--TTCSEEEECCSCCCSHHHHHHHHHHHHHC--TTCEEEEEEE-CSHHHHHHHHHHTCSEEEE
T ss_pred hHHHHHHHHH--cCCCEEEeeccCCcchhHHHHHHHHHHhC--CCCceEeccc-chHHHHHHHHHcCCCEEEE
Confidence 4455555666 68999999887654433 58899998864 5788886332 4577788999999998865
No 192
>1r8j_A KAIA; circadian clock protein; 2.03A {Synechococcus elongatus pcc 7942} SCOP: a.186.1.1 c.23.1.5 PDB: 1m2e_A 1m2f_A
Probab=79.56 E-value=15 Score=27.75 Aligned_cols=97 Identities=12% Similarity=0.022 Sum_probs=62.1
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHH--HHHcCCceE
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFK--CLSKGAVYF 78 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~--a~~~Ga~~~ 78 (162)
|.+..+....+.++.++.+.+.+|++|+-.. +..-..+...+.+.. --+|+|++..........- -+.....+.
T Consensus 34 Y~l~~~~s~~~f~~~le~~~e~iDcLvle~~--~~~~~~~~~~L~~~g--~lLP~vil~~~~~~~~~~~~~~~~yh~aEv 109 (289)
T 1r8j_A 34 YQLQVCESGEMLLEYAQTHRDQIDCLILVAA--NPSFRAVVQQLCFEG--VVVPAIVVGDRDSEDPDEPAKEQLYHSAEL 109 (289)
T ss_dssp EEEEEECSHHHHHHHHHHSTTSCSEEEEETT--STTHHHHHHHHHHTT--CCCCEEEESCCC------CCSSCSSBTTCE
T ss_pred eEEEEcCcHHHHHHHHHhccccCCEEEEEeC--CCccHHHHHHHHHcC--ccccEEEeccCccccCCCCccceeccHHHH
Confidence 5778889999999999875567999998752 223567788888766 6789998876422000000 022223334
Q ss_pred EeCCCCHHHHHHHHHHHHHhccC
Q 044790 79 LVKPIRKNELQNLWQHVWRKCHS 101 (162)
Q Consensus 79 l~KP~~~~~L~~~i~~~l~~~~~ 101 (162)
-...-..+++...|...+.+...
T Consensus 110 ~l~~~ql~~l~~~Id~AI~~Fl~ 132 (289)
T 1r8j_A 110 HLGIHQLEQLPYQVDAALAEFLR 132 (289)
T ss_dssp EECTTCGGGHHHHHHHHHHHHHH
T ss_pred cCCHhHHHHHHHHHHHHHHHHHc
Confidence 44555667787777777776543
No 193
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5
Probab=79.35 E-value=10 Score=27.32 Aligned_cols=69 Identities=17% Similarity=0.098 Sum_probs=48.1
Q ss_pred EEcCHHHHHHHHHhhCCCccEE---EEcCCCCC----CCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCce
Q 044790 5 AVENGLQAWKILEDLMDQIDLV---LTEVLMPC----LSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVY 77 (162)
Q Consensus 5 ~a~~~~eal~~l~~~~~~~Dlv---llD~~mp~----~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~ 77 (162)
.+.+..++..... ...|+| ++.+.-.. ...++++++++.. .+||++...-...+.+.++++.|++.
T Consensus 139 ~~~t~~ea~~a~~---~Gad~i~~~v~g~~~~~~~~~~~~~~~i~~~~~~----~ipvia~GGI~s~~~~~~~~~~Gad~ 211 (234)
T 1yxy_A 139 DISTFDEGLVAHQ---AGIDFVGTTLSGYTPYSRQEAGPDVALIEALCKA----GIAVIAEGKIHSPEEAKKINDLGVAG 211 (234)
T ss_dssp ECSSHHHHHHHHH---TTCSEEECTTTTSSTTSCCSSSCCHHHHHHHHHT----TCCEEEESCCCSHHHHHHHHTTCCSE
T ss_pred eCCCHHHHHHHHH---cCCCEEeeeccccCCCCcCCCCCCHHHHHHHHhC----CCCEEEECCCCCHHHHHHHHHCCCCE
Confidence 4456777766554 468888 44332111 1236778888763 68999888887799999999999999
Q ss_pred EEe
Q 044790 78 FLV 80 (162)
Q Consensus 78 ~l~ 80 (162)
++.
T Consensus 212 v~v 214 (234)
T 1yxy_A 212 IVV 214 (234)
T ss_dssp EEE
T ss_pred EEE
Confidence 864
No 194
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=79.06 E-value=20 Score=27.76 Aligned_cols=67 Identities=10% Similarity=0.125 Sum_probs=46.6
Q ss_pred EEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEE
Q 044790 3 VIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFL 79 (162)
Q Consensus 3 v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l 79 (162)
.+.+++.+++.+.+.. .+|+|.+|-. +--++-+.++... .. ..|..++.-..+.+....+.|+|.|-
T Consensus 235 eVEVdtldea~eAl~a---GaD~I~LDn~----~~~~l~~av~~l~--~~-v~ieaSGGIt~~~I~~~a~tGVD~is 301 (320)
T 3paj_A 235 EVETETLAELEEAISA---GADIIMLDNF----SLEMMREAVKINA--GR-AALENSGNITLDNLKECAETGVDYIS 301 (320)
T ss_dssp EEEESSHHHHHHHHHT---TCSEEEEESC----CHHHHHHHHHHHT--TS-SEEEEESSCCHHHHHHHHTTTCSEEE
T ss_pred EEEECCHHHHHHHHHc---CCCEEEECCC----CHHHHHHHHHHhC--CC-CeEEEECCCCHHHHHHHHHcCCCEEE
Confidence 3578899999888875 6899999963 3333333333322 33 45667787889999999999997664
No 195
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*
Probab=78.91 E-value=20 Score=27.50 Aligned_cols=69 Identities=22% Similarity=0.166 Sum_probs=50.0
Q ss_pred EEcCHHHHHHHHHhhCCCccEEEEcCCCC-----CCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEE
Q 044790 5 AVENGLQAWKILEDLMDQIDLVLTEVLMP-----CLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFL 79 (162)
Q Consensus 5 ~a~~~~eal~~l~~~~~~~DlvllD~~mp-----~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l 79 (162)
.+.+.+++... .+ ..+|.|+++-.-. ....+++++.++.. ..+|||+...-.+.+.+.+++..|+++..
T Consensus 116 ~v~~~~~a~~~-~~--~GaD~i~v~g~~~GG~~g~~~~~~ll~~i~~~---~~iPViaaGGI~~~~~~~~al~~GAdgV~ 189 (332)
T 2z6i_A 116 VVPSVALAKRM-EK--IGADAVIAEGMEAGGHIGKLTTMTLVRQVATA---ISIPVIAAGGIADGEGAAAGFMLGAEAVQ 189 (332)
T ss_dssp EESSHHHHHHH-HH--TTCSCEEEECTTSSEECCSSCHHHHHHHHHHH---CSSCEEEESSCCSHHHHHHHHHTTCSEEE
T ss_pred EeCCHHHHHHH-HH--cCCCEEEEECCCCCCCCCCccHHHHHHHHHHh---cCCCEEEECCCCCHHHHHHHHHcCCCEEE
Confidence 45666666544 44 5689988853211 23567888888764 36899988888889999999999999864
No 196
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=78.71 E-value=8.2 Score=30.83 Aligned_cols=65 Identities=20% Similarity=0.206 Sum_probs=45.3
Q ss_pred HHHHHHHHhhCCCccEEEEcCCCCCCCH-HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 10 LQAWKILEDLMDQIDLVLTEVLMPCLSG-IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 10 ~eal~~l~~~~~~~DlvllD~~mp~~~g-~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
.+.++.+.+ ..+|+|++|........ .++++++++. ..+|||+=. -...+.+..+.++|++.++.
T Consensus 146 ~e~~~~lve--aGvdvIvldta~G~~~~~~e~I~~ik~~---~~i~Vi~g~-V~t~e~A~~a~~aGAD~I~v 211 (400)
T 3ffs_A 146 IERAKLLVE--AGVDVIVLDSAHGHSLNIIRTLKEIKSK---MNIDVIVGN-VVTEEATKELIENGADGIKV 211 (400)
T ss_dssp CHHHHHHHH--HTCSEEEECCSCCSBHHHHHHHHHHHTT---CCCEEEEEE-ECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHH--cCCCEEEEeCCCCCcccHHHHHHHHHhc---CCCeEEEee-cCCHHHHHHHHHcCCCEEEE
Confidence 355566655 57999999976543322 5778888764 267777522 23578889999999999987
No 197
>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}
Probab=78.66 E-value=3.9 Score=30.64 Aligned_cols=81 Identities=17% Similarity=0.188 Sum_probs=49.9
Q ss_pred HHHHHhhCCCccEEEEcCCC--CCCCH-----------------HHHHHHHHccCCCCCCcEEEEecC------CCHHHH
Q 044790 13 WKILEDLMDQIDLVLTEVLM--PCLSG-----------------IGLLRKIMNHKTCKNIPVIMMSSH------DSMSIV 67 (162)
Q Consensus 13 l~~l~~~~~~~DlvllD~~m--p~~~g-----------------~~~~~~ir~~~~~~~~piI~lt~~------~~~~~~ 67 (162)
+..+.+ ...|+|=+.+-- |-.|| -.+++.+++.. ..+|+++|+=. .-....
T Consensus 34 ~~~l~~--~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r--~~~Pivlm~Y~N~i~~~G~e~F~ 109 (252)
T 3tha_A 34 LQRLDQ--SPIDILELGVAYSDPIADGEIIADAAKIALDQGVDIHSVFELLARIK--TKKALVFMVYYNLIFSYGLEKFV 109 (252)
T ss_dssp HHTGGG--SSCSEEEEECCCSCCCSCCCHHHHHHHHHHHTTCCHHHHHHHHHHCC--CSSEEEEECCHHHHHHHCHHHHH
T ss_pred HHHHHH--cCCCEEEECCCCCCCCCCcHHHHHHHHHHHHCCCCHHHHHHHHHHHh--cCCCEEEEeccCHHHHhhHHHHH
Confidence 333444 568888776632 33343 22344444433 24899998843 345567
Q ss_pred HHHHHcCCceEEeCCCCHHHHHHHHHHHHHh
Q 044790 68 FKCLSKGAVYFLVKPIRKNELQNLWQHVWRK 98 (162)
Q Consensus 68 ~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 98 (162)
.+|.++|++++|.-.+.+++. ..+...++.
T Consensus 110 ~~~~~aGvdG~IipDLP~eE~-~~~~~~~~~ 139 (252)
T 3tha_A 110 KKAKSLGICALIVPELSFEES-DDLIKECER 139 (252)
T ss_dssp HHHHHTTEEEEECTTCCGGGC-HHHHHHHHH
T ss_pred HHHHHcCCCEEEeCCCCHHHH-HHHHHHHHH
Confidence 889999999999988877773 334444444
No 198
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=78.36 E-value=6.9 Score=30.34 Aligned_cols=53 Identities=9% Similarity=0.119 Sum_probs=41.8
Q ss_pred HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHH
Q 044790 38 IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQH 94 (162)
Q Consensus 38 ~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~ 94 (162)
-+.++..|+.. +..+|++... ..+.+.+++++|++......+++++|.+.++.
T Consensus 219 ~~Av~~ar~~~--p~~kIeVEVd--tldea~eAl~aGaD~I~LDn~~~~~l~~av~~ 271 (320)
T 3paj_A 219 RQAISTAKQLN--PGKPVEVETE--TLAELEEAISAGADIIMLDNFSLEMMREAVKI 271 (320)
T ss_dssp HHHHHHHHHHS--TTSCEEEEES--SHHHHHHHHHTTCSEEEEESCCHHHHHHHHHH
T ss_pred HHHHHHHHHhC--CCCeEEEEEC--CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHH
Confidence 35667777655 6678877665 35778899999999999999999999888865
No 199
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A
Probab=77.67 E-value=8.9 Score=27.81 Aligned_cols=78 Identities=14% Similarity=0.161 Sum_probs=54.8
Q ss_pred CHHHHHHHHHhhCCCccEEE-EcCC----CCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHc-----C-Cc
Q 044790 8 NGLQAWKILEDLMDQIDLVL-TEVL----MPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSK-----G-AV 76 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~Dlvl-lD~~----mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~-----G-a~ 76 (162)
+..+..+.+.+ ..++.|+ .++. +.+. .+++++++++. ..+|||....-...+.+.++++. | ++
T Consensus 145 ~~~e~~~~~~~--~G~~~i~~t~~~~~g~~~g~-~~~~i~~l~~~---~~iPvia~GGI~~~~d~~~~~~~~~~~~G~ad 218 (241)
T 1qo2_A 145 DPVSLLKRLKE--YGLEEIVHTEIEKDGTLQEH-DFSLTKKIAIE---AEVKVLAAGGISSENSLKTAQKVHTETNGLLK 218 (241)
T ss_dssp CHHHHHHHHHT--TTCCEEEEEETTHHHHTCCC-CHHHHHHHHHH---HTCEEEEESSCCSHHHHHHHHHHHHHTTTSEE
T ss_pred CHHHHHHHHHh--CCCCEEEEEeecccccCCcC-CHHHHHHHHHh---cCCcEEEECCCCCHHHHHHHHhcccccCCeEe
Confidence 44565555665 5677444 4542 2333 38899999875 37899999988888999999998 9 99
Q ss_pred eEEe------CCCCHHHHHHH
Q 044790 77 YFLV------KPIRKNELQNL 91 (162)
Q Consensus 77 ~~l~------KP~~~~~L~~~ 91 (162)
+++. .+++..++.+.
T Consensus 219 gv~vgsal~~~~~~~~~~~~~ 239 (241)
T 1qo2_A 219 GVIVGRAFLEGILTVEVMKRY 239 (241)
T ss_dssp EEEECHHHHTTSSCHHHHHHH
T ss_pred EEEeeHHHHcCCCCHHHHHHH
Confidence 8764 46766666554
No 200
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=77.61 E-value=13 Score=30.08 Aligned_cols=68 Identities=15% Similarity=0.111 Sum_probs=48.6
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCCCCC-CHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLMPCL-SGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~mp~~-~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
+..+.++.+.+ ..+|.|.++...... .-++.+++||+.. +.+||++=. -...+....+.+.|++.+..
T Consensus 237 ~~~~~a~~l~~--aGvd~v~i~~~~G~~~~~~e~i~~i~~~~--p~~pvi~g~-~~t~e~a~~l~~~G~d~I~v 305 (494)
T 1vrd_A 237 ETMERVEKLVK--AGVDVIVIDTAHGHSRRVIETLEMIKADY--PDLPVVAGN-VATPEGTEALIKAGADAVKV 305 (494)
T ss_dssp THHHHHHHHHH--TTCSEEEECCSCCSSHHHHHHHHHHHHHC--TTSCEEEEE-ECSHHHHHHHHHTTCSEEEE
T ss_pred hHHHHHHHHHH--hCCCEEEEEecCCchHHHHHHHHHHHHHC--CCceEEeCC-cCCHHHHHHHHHcCCCEEEE
Confidence 33556666666 689999998764322 2578899998764 578887633 34567788899999998876
No 201
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*
Probab=77.04 E-value=23 Score=27.26 Aligned_cols=45 Identities=18% Similarity=0.062 Sum_probs=37.1
Q ss_pred CCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 34 CLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 34 ~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
+...++.++.+++.. ..+|||....-...+.+.+++..||+.+..
T Consensus 235 g~~~~~~l~~v~~~~--~~ipvia~GGI~~~~d~~k~l~~GAd~V~i 279 (349)
T 1p0k_A 235 GISTAASLAEIRSEF--PASTMIASGGLQDALDVAKAIALGASCTGM 279 (349)
T ss_dssp SCCHHHHHHHHHHHC--TTSEEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred CccHHHHHHHHHHhc--CCCeEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 456777888887643 579999999999999999999999998854
No 202
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=76.19 E-value=12 Score=28.54 Aligned_cols=66 Identities=9% Similarity=0.081 Sum_probs=45.7
Q ss_pred EEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEE
Q 044790 4 IAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFL 79 (162)
Q Consensus 4 ~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l 79 (162)
+.+++.+|+.+.++. ..|+|.+|-.-| -++-+.++... .. ..|..++.-..+.+....+.|+|.+-
T Consensus 203 VEv~tl~ea~eAl~a---GaD~I~LDn~~~----~~l~~av~~~~--~~-v~ieaSGGIt~~~i~~~a~tGVD~Is 268 (287)
T 3tqv_A 203 VEVTNLDELNQAIAA---KADIVMLDNFSG----EDIDIAVSIAR--GK-VALEVSGNIDRNSIVAIAKTGVDFIS 268 (287)
T ss_dssp EEESSHHHHHHHHHT---TCSEEEEESCCH----HHHHHHHHHHT--TT-CEEEEESSCCTTTHHHHHTTTCSEEE
T ss_pred EEeCCHHHHHHHHHc---CCCEEEEcCCCH----HHHHHHHHhhc--CC-ceEEEECCCCHHHHHHHHHcCCCEEE
Confidence 478899999998876 689999996433 23322333222 23 35567777788888888899998764
No 203
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=75.76 E-value=11 Score=27.17 Aligned_cols=82 Identities=16% Similarity=0.129 Sum_probs=49.2
Q ss_pred CHHHHHHHHHhhCCCccEEEEcC---CC-CC-CCHHHHHHHHHccCCCCCCcEE--EEecCCCHHHHHHHHHcCCceEEe
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEV---LM-PC-LSGIGLLRKIMNHKTCKNIPVI--MMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~---~m-p~-~~g~~~~~~ir~~~~~~~~piI--~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
+..+.++.+.+ ...|++=+|+ .. |. ..|.+.++.||+.. ..|+. +++. +...++..+++.|++.+..
T Consensus 20 ~l~~~i~~~~~--~Gad~i~l~i~Dg~fv~~~~~~~~~~~~lr~~~---~~~~~v~lmv~-d~~~~i~~~~~agad~v~v 93 (228)
T 1h1y_A 20 NLAAEADRMVR--LGADWLHMDIMDGHFVPNLTIGAPVIQSLRKHT---KAYLDCHLMVT-NPSDYVEPLAKAGASGFTF 93 (228)
T ss_dssp GHHHHHHHHHH--TTCSEEEEEEEBSSSSSCBCBCHHHHHHHHTTC---CSEEEEEEESS-CGGGGHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHH--cCCCEEEEEEecCCcCcchhhCHHHHHHHHhhc---CCcEEEEEEec-CHHHHHHHHHHcCCCEEEE
Confidence 44566677766 5677654443 21 22 34689999998753 33444 6664 4455688899999999865
Q ss_pred CCCCHHHH-HHHHHHH
Q 044790 81 KPIRKNEL-QNLWQHV 95 (162)
Q Consensus 81 KP~~~~~L-~~~i~~~ 95 (162)
-....++. ...++.+
T Consensus 94 H~~~~~~~~~~~~~~i 109 (228)
T 1h1y_A 94 HIEVSRDNWQELIQSI 109 (228)
T ss_dssp EGGGCTTTHHHHHHHH
T ss_pred CCCCcccHHHHHHHHH
Confidence 54333333 4444443
No 204
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=75.71 E-value=8.5 Score=29.52 Aligned_cols=54 Identities=13% Similarity=0.175 Sum_probs=41.6
Q ss_pred HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHH
Q 044790 38 IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHV 95 (162)
Q Consensus 38 ~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~ 95 (162)
-+.++.+|+.. +..+|.+-.. ..+.+.+++++|++..+...+++++|.+.++.+
T Consensus 197 ~~Av~~~r~~~--p~~~ieVEvd--tlde~~eAl~aGaD~I~LDn~~~~~l~~av~~i 250 (298)
T 3gnn_A 197 GEALDAAFALN--AEVPVQIEVE--TLDQLRTALAHGARSVLLDNFTLDMMRDAVRVT 250 (298)
T ss_dssp HHHHHHHHHHC----CCCEEEES--SHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC--CCCCEEEEeC--CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Confidence 35567777754 5677777754 456788999999999999999999999998865
No 205
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=75.46 E-value=12 Score=28.59 Aligned_cols=60 Identities=13% Similarity=-0.020 Sum_probs=47.3
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCC
Q 044790 21 DQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKP 82 (162)
Q Consensus 21 ~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP 82 (162)
-..++|.+|+.- .....++++++++.- ...+||++=-.-...+.+.+++.+||+..+.-.
T Consensus 198 ~G~~lV~LD~~~-~~v~~e~V~~I~~~~-~~~iPV~vGGGIrs~Eda~~ll~aGAD~VVVGS 257 (286)
T 3vk5_A 198 FGFHMVYLYSRN-EHVPPEVVRHFRKGL-GPDQVLFVSGNVRSGRQVTEYLDSGADYVGFAG 257 (286)
T ss_dssp TTCSEEEEECSS-SCCCHHHHHHHHHHS-CTTCEEEEESSCCSHHHHHHHHHTTCSEEEESG
T ss_pred cCCCEEEEcCCC-CcCCHHHHHHHHHhc-CCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECc
Confidence 346899999855 333468899998752 017899988888899999999999999998765
No 206
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=75.35 E-value=10 Score=28.77 Aligned_cols=70 Identities=14% Similarity=0.160 Sum_probs=47.5
Q ss_pred EEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 4 IAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 4 ~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
+.+.+.+++.+.++. ..|+|++|-.-|. .--+.++.++... +++ .|..++.-..+.+....+.|+|.|..
T Consensus 199 Vev~t~eea~eal~a---GaD~I~LDn~~~~-~~~~~v~~l~~~~--~~v-~ieaSGGIt~~~i~~~a~tGVD~isv 268 (284)
T 1qpo_A 199 VEVDSLEQLDAVLPE---KPELILLDNFAVW-QTQTAVQRRDSRA--PTV-MLESSGGLSLQTAATYAETGVDYLAV 268 (284)
T ss_dssp EEESSHHHHHHHGGG---CCSEEEEETCCHH-HHHHHHHHHHHHC--TTC-EEEEESSCCTTTHHHHHHTTCSEEEC
T ss_pred EEeCCHHHHHHHHHc---CCCEEEECCCCHH-HHHHHHHHhhccC--CCe-EEEEECCCCHHHHHHHHhcCCCEEEE
Confidence 467788898888775 6899999974331 1223445555432 344 55567777888888989999987753
No 207
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=75.08 E-value=21 Score=25.92 Aligned_cols=74 Identities=19% Similarity=0.294 Sum_probs=47.9
Q ss_pred CccEEEEcCCCCCCCH-------HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe-----CCCCHHHHH
Q 044790 22 QIDLVLTEVLMPCLSG-------IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV-----KPIRKNELQ 89 (162)
Q Consensus 22 ~~DlvllD~~mp~~~g-------~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~-----KP~~~~~L~ 89 (162)
.+|+|++....|+..| ++-++++|+.. ..++|. +...-..+.+..+.++||+.++. +.-++.+-.
T Consensus 134 ~~D~Vl~msv~pGf~Gq~f~~~~l~ki~~lr~~~--~~~~I~-VdGGI~~~t~~~~~~aGAd~~VvGsaIf~a~dp~~~~ 210 (228)
T 3ovp_A 134 QIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQF--PSLDIE-VDGGVGPDTVHKCAEAGANMIVSGSAIMRSEDPRSVI 210 (228)
T ss_dssp GCSEEEEESSCTTTCSCCCCGGGHHHHHHHHHHC--TTCEEE-EESSCSTTTHHHHHHHTCCEEEESHHHHTCSCHHHHH
T ss_pred cCCeEEEeeecCCCCCcccCHHHHHHHHHHHHhc--CCCCEE-EeCCcCHHHHHHHHHcCCCEEEEeHHHhCCCCHHHHH
Confidence 3688887777787766 33366666643 456555 55555678889999999998765 434565555
Q ss_pred HHHHHHHHh
Q 044790 90 NLWQHVWRK 98 (162)
Q Consensus 90 ~~i~~~l~~ 98 (162)
..++..+..
T Consensus 211 ~~l~~~~~~ 219 (228)
T 3ovp_A 211 NLLRNVCSE 219 (228)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555544443
No 208
>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*
Probab=74.72 E-value=24 Score=26.37 Aligned_cols=86 Identities=19% Similarity=0.256 Sum_probs=57.5
Q ss_pred CHHHHHHHHHhhCCCccEEEE---------cCCC--C-------CCCH-------HHHHHHHHccCCCCCCcEEEEecCC
Q 044790 8 NGLQAWKILEDLMDQIDLVLT---------EVLM--P-------CLSG-------IGLLRKIMNHKTCKNIPVIMMSSHD 62 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~Dlvll---------D~~m--p-------~~~g-------~~~~~~ir~~~~~~~~piI~lt~~~ 62 (162)
+..+..+.+.+ ...|.|++ +..- | +..| +++++.+++. ..+|||....-.
T Consensus 177 ~~~~~a~~l~~--~G~d~i~v~~~~~g~~i~~~~~~~~~~~~~~g~~g~~~~~~~~~~i~~i~~~---~~ipvia~GGI~ 251 (311)
T 1ep3_A 177 DIVPIAKAVEA--AGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQVAQD---VDIPIIGMGGVA 251 (311)
T ss_dssp CSHHHHHHHHH--TTCSEEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHHHHHHHHHHHHTT---CSSCEEECSSCC
T ss_pred HHHHHHHHHHH--cCCCEEEEeCCCcccccCcccCCccccCCCCcccCccchHHHHHHHHHHHHh---cCCCEEEECCcC
Confidence 44565666776 67898887 3311 1 1112 4677788764 379999888877
Q ss_pred CHHHHHHHHHcCCceEE------eCCCCHHHHHHHHHHHHHh
Q 044790 63 SMSIVFKCLSKGAVYFL------VKPIRKNELQNLWQHVWRK 98 (162)
Q Consensus 63 ~~~~~~~a~~~Ga~~~l------~KP~~~~~L~~~i~~~l~~ 98 (162)
+.+.+.+++..||+... ..|.-..++..-++.++..
T Consensus 252 ~~~d~~~~l~~GAd~V~vg~~~l~~p~~~~~i~~~l~~~~~~ 293 (311)
T 1ep3_A 252 NAQDVLEMYMAGASAVAVGTANFADPFVCPKIIDKLPELMDQ 293 (311)
T ss_dssp SHHHHHHHHHHTCSEEEECTHHHHCTTHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCEEEECHHHHcCcHHHHHHHHHHHHHHHH
Confidence 89999999999998763 3455556666666665544
No 209
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=74.43 E-value=26 Score=26.58 Aligned_cols=76 Identities=13% Similarity=0.063 Sum_probs=51.8
Q ss_pred HHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHH
Q 044790 10 LQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQ 89 (162)
Q Consensus 10 ~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~ 89 (162)
.+..+.+.. .|++|+=....+.-|..+++.+.. .+|||.... ....+.+..|..+++..|.+.++|.
T Consensus 274 ~~~~~~~~~----adv~v~ps~~~e~~~~~~~Ea~a~-----G~PvI~~~~----~~~~e~i~~~~~g~~~~~~d~~~l~ 340 (406)
T 2gek_A 274 ATKASAMRS----ADVYCAPHLGGESFGIVLVEAMAA-----GTAVVASDL----DAFRRVLADGDAGRLVPVDDADGMA 340 (406)
T ss_dssp HHHHHHHHH----SSEEEECCCSCCSSCHHHHHHHHH-----TCEEEECCC----HHHHHHHTTTTSSEECCTTCHHHHH
T ss_pred HHHHHHHHH----CCEEEecCCCCCCCchHHHHHHHc-----CCCEEEecC----CcHHHHhcCCCceEEeCCCCHHHHH
Confidence 444555554 577777532233345667777753 678775322 4456677778899999999999999
Q ss_pred HHHHHHHHh
Q 044790 90 NLWQHVWRK 98 (162)
Q Consensus 90 ~~i~~~l~~ 98 (162)
..|..++..
T Consensus 341 ~~i~~l~~~ 349 (406)
T 2gek_A 341 AALIGILED 349 (406)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHcC
Confidence 999988753
No 210
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=73.65 E-value=20 Score=25.03 Aligned_cols=80 Identities=16% Similarity=0.198 Sum_probs=49.2
Q ss_pred cCHHHHHHHH---HhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCC
Q 044790 7 ENGLQAWKIL---EDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPI 83 (162)
Q Consensus 7 ~~~~eal~~l---~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~ 83 (162)
.+.+++.+.+ .+ ..+++|-+.+..| .+.+.++.+|+... ...+ |-+......+....+.+.|++-+ .-|.
T Consensus 19 ~~~~~~~~~~~~~~~--~G~~~iev~~~~~--~~~~~i~~ir~~~~-~~~~-ig~~~v~~~~~~~~a~~~Gad~i-v~~~ 91 (205)
T 1wa3_A 19 NSVEEAKEKALAVFE--GGVHLIEITFTVP--DADTVIKELSFLKE-KGAI-IGAGTVTSVEQCRKAVESGAEFI-VSPH 91 (205)
T ss_dssp SSHHHHHHHHHHHHH--TTCCEEEEETTST--THHHHHHHTHHHHH-TTCE-EEEESCCSHHHHHHHHHHTCSEE-ECSS
T ss_pred CCHHHHHHHHHHHHH--CCCCEEEEeCCCh--hHHHHHHHHHHHCC-CCcE-EEecccCCHHHHHHHHHcCCCEE-EcCC
Confidence 4455554444 44 5688887766655 56777888887520 1333 33433346778899999999877 5565
Q ss_pred CHHHHHHHHH
Q 044790 84 RKNELQNLWQ 93 (162)
Q Consensus 84 ~~~~L~~~i~ 93 (162)
-..++.+..+
T Consensus 92 ~~~~~~~~~~ 101 (205)
T 1wa3_A 92 LDEEISQFCK 101 (205)
T ss_dssp CCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 4455555443
No 211
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=73.51 E-value=24 Score=26.98 Aligned_cols=65 Identities=17% Similarity=0.042 Sum_probs=45.6
Q ss_pred EEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceE
Q 044790 4 IAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYF 78 (162)
Q Consensus 4 ~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~ 78 (162)
+.+++.+++.+.+.. .+|+|.+|-. +--++-+.++... ++ ..|..++.-..+.+.+..+.|+|.|
T Consensus 214 VEvdtlde~~eAl~a---GaD~I~LDn~----~~~~l~~av~~i~--~~-v~ieaSGGI~~~~i~~~a~tGVD~i 278 (298)
T 3gnn_A 214 IEVETLDQLRTALAH---GARSVLLDNF----TLDMMRDAVRVTE--GR-AVLEVSGGVNFDTVRAIAETGVDRI 278 (298)
T ss_dssp EEESSHHHHHHHHHT---TCEEEEEESC----CHHHHHHHHHHHT--TS-EEEEEESSCSTTTHHHHHHTTCSEE
T ss_pred EEeCCHHHHHHHHHc---CCCEEEECCC----CHHHHHHHHHHhC--CC-CeEEEEcCCCHHHHHHHHHcCCCEE
Confidence 468899998888875 6899999963 3334434444332 33 4566777778888888889999766
No 212
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=73.35 E-value=27 Score=27.45 Aligned_cols=73 Identities=18% Similarity=0.135 Sum_probs=50.4
Q ss_pred EEcCHHHHHHHHHhhCCCccEEEEcCCC-----------CCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHc
Q 044790 5 AVENGLQAWKILEDLMDQIDLVLTEVLM-----------PCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSK 73 (162)
Q Consensus 5 ~a~~~~eal~~l~~~~~~~DlvllD~~m-----------p~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~ 73 (162)
.+.+.++|.++.+. ..|.|.+.+.- .+...++++..++.......+|||.--.-.....+.+++.+
T Consensus 156 ~v~t~e~A~~a~~a---GAD~I~vG~gpGs~~~tr~~~g~g~p~~~~l~~v~~~~~~~~iPVIA~GGI~~~~di~kala~ 232 (366)
T 4fo4_A 156 NVATAEGARALIEA---GVSAVKVGIGPGSICTTRIVTGVGVPQITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAA 232 (366)
T ss_dssp EECSHHHHHHHHHH---TCSEEEECSSCSTTBCHHHHHCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHT
T ss_pred eeCCHHHHHHHHHc---CCCEEEEecCCCCCCCcccccCcccchHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHc
Confidence 46788888777665 68999884321 11234556666653211147999988888889999999999
Q ss_pred CCceEEe
Q 044790 74 GAVYFLV 80 (162)
Q Consensus 74 Ga~~~l~ 80 (162)
||+....
T Consensus 233 GAd~V~v 239 (366)
T 4fo4_A 233 GASCVMV 239 (366)
T ss_dssp TCSEEEE
T ss_pred CCCEEEE
Confidence 9998854
No 213
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=73.14 E-value=6.8 Score=27.60 Aligned_cols=65 Identities=9% Similarity=0.039 Sum_probs=44.5
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
+..++...++ ..+|+|-+... ..-|.+.++.++... +++||+...+-. .+.+.+++..|++.+..
T Consensus 113 t~~e~~~a~~---~Gad~vk~~~~--~~~g~~~~~~l~~~~--~~~pvia~GGI~-~~~~~~~~~~Ga~~v~v 177 (205)
T 1wa3_A 113 TPTELVKAMK---LGHTILKLFPG--EVVGPQFVKAMKGPF--PNVKFVPTGGVN-LDNVCEWFKAGVLAVGV 177 (205)
T ss_dssp SHHHHHHHHH---TTCCEEEETTH--HHHHHHHHHHHHTTC--TTCEEEEBSSCC-TTTHHHHHHHTCSCEEE
T ss_pred CHHHHHHHHH---cCCCEEEEcCc--cccCHHHHHHHHHhC--CCCcEEEcCCCC-HHHHHHHHHCCCCEEEE
Confidence 5666666554 46787765421 113678888887643 478888777664 66788999999998754
No 214
>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A*
Probab=73.09 E-value=4.2 Score=29.28 Aligned_cols=83 Identities=13% Similarity=0.122 Sum_probs=49.7
Q ss_pred cCHHHHHHHHHhhCCCccEEEEcCCCCC--CCHHHHHHHHHccCCCCCCcEEEEec-CC-CHHHHHHHHHcCCceEEeCC
Q 044790 7 ENGLQAWKILEDLMDQIDLVLTEVLMPC--LSGIGLLRKIMNHKTCKNIPVIMMSS-HD-SMSIVFKCLSKGAVYFLVKP 82 (162)
Q Consensus 7 ~~~~eal~~l~~~~~~~DlvllD~~mp~--~~g~~~~~~ir~~~~~~~~piI~lt~-~~-~~~~~~~a~~~Ga~~~l~KP 82 (162)
.+.+++++.++......| ++++.+|- ..|.++++.||+.. ++.|+++-.- .. ....+..+.++|++.+..-.
T Consensus 16 ~~~~~~~~~~~~~~~~vd--~ie~g~~~~~~~G~~~i~~lr~~~--~~~~i~ld~~l~d~p~~~~~~~~~aGad~i~vh~ 91 (218)
T 3jr2_A 16 TNLTDAVAVASNVASYVD--VIEVGTILAFAEGMKAVSTLRHNH--PNHILVCDMKTTDGGAILSRMAFEAGADWITVSA 91 (218)
T ss_dssp SSHHHHHHHHHHHGGGCS--EEEECHHHHHHHTTHHHHHHHHHC--TTSEEEEEEEECSCHHHHHHHHHHHTCSEEEEET
T ss_pred CCHHHHHHHHHHhcCCce--EEEeCcHHHHhcCHHHHHHHHHhC--CCCcEEEEEeecccHHHHHHHHHhcCCCEEEEec
Confidence 467888888876212344 45555442 35788899998763 4566654221 12 23456778899999887765
Q ss_pred CCHHH-HHHHHH
Q 044790 83 IRKNE-LQNLWQ 93 (162)
Q Consensus 83 ~~~~~-L~~~i~ 93 (162)
...++ +.+.++
T Consensus 92 ~~~~~~~~~~~~ 103 (218)
T 3jr2_A 92 AAHIATIAACKK 103 (218)
T ss_dssp TSCHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 55444 334333
No 215
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=73.06 E-value=31 Score=27.16 Aligned_cols=73 Identities=14% Similarity=0.085 Sum_probs=48.4
Q ss_pred EEcCHHHHHHHHHhhCCCccEEEEcCCC-----------CCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHc
Q 044790 5 AVENGLQAWKILEDLMDQIDLVLTEVLM-----------PCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSK 73 (162)
Q Consensus 5 ~a~~~~eal~~l~~~~~~~DlvllD~~m-----------p~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~ 73 (162)
.+.+.++|.... + ..+|.|++...- .+...++.+..+++......+|||....-.....+.+++.+
T Consensus 201 ~v~~~~~a~~a~-~--~Gad~I~vg~~~G~~~~~~~~~~~g~p~~~~l~~v~~~~~~~~ipVia~GGI~~~~d~~~ala~ 277 (404)
T 1eep_A 201 NIVTKEAALDLI-S--VGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEACNNTNICIIADGGIRFSGDVVKAIAA 277 (404)
T ss_dssp EECSHHHHHHHH-T--TTCSEEEECSSCSTTSHHHHHHCCCCCHHHHHHHHHHHHTTSSCEEEEESCCCSHHHHHHHHHH
T ss_pred CCCcHHHHHHHH-h--cCCCEEEECCCCCcCcCccccCCCCcchHHHHHHHHHHHhhcCceEEEECCCCCHHHHHHHHHc
Confidence 355666665544 4 578999883210 02224566666654211147999988888889999999999
Q ss_pred CCceEEe
Q 044790 74 GAVYFLV 80 (162)
Q Consensus 74 Ga~~~l~ 80 (162)
||+....
T Consensus 278 GAd~V~i 284 (404)
T 1eep_A 278 GADSVMI 284 (404)
T ss_dssp TCSEEEE
T ss_pred CCCHHhh
Confidence 9998854
No 216
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=72.99 E-value=27 Score=26.15 Aligned_cols=77 Identities=14% Similarity=0.182 Sum_probs=48.9
Q ss_pred HHHHhhCCCccEEEEcCCCCCCCH-HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe--CCCCHHHHHH
Q 044790 14 KILEDLMDQIDLVLTEVLMPCLSG-IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV--KPIRKNELQN 90 (162)
Q Consensus 14 ~~l~~~~~~~DlvllD~~mp~~~g-~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~--KP~~~~~L~~ 90 (162)
+.+.+ ...+.|=+=..-.-+.| ++.++.+|+. ..+||+.---.-+...+..+...||+..+. .-.+.+++..
T Consensus 79 ~~y~~--~GA~~isvltd~~~f~Gs~~~l~~ir~~---v~lPvl~kdfiid~~qv~~A~~~GAD~VlLi~a~l~~~~l~~ 153 (272)
T 3qja_A 79 QAYQD--GGARIVSVVTEQRRFQGSLDDLDAVRAS---VSIPVLRKDFVVQPYQIHEARAHGADMLLLIVAALEQSVLVS 153 (272)
T ss_dssp HHHHH--TTCSEEEEECCGGGHHHHHHHHHHHHHH---CSSCEEEESCCCSHHHHHHHHHTTCSEEEEEGGGSCHHHHHH
T ss_pred HHHHH--cCCCEEEEecChhhcCCCHHHHHHHHHh---CCCCEEECccccCHHHHHHHHHcCCCEEEEecccCCHHHHHH
Confidence 34444 44555543323333444 7889999875 478998665445665689999999999986 4455566555
Q ss_pred HHHHH
Q 044790 91 LWQHV 95 (162)
Q Consensus 91 ~i~~~ 95 (162)
.+...
T Consensus 154 l~~~a 158 (272)
T 3qja_A 154 MLDRT 158 (272)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 217
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=72.84 E-value=34 Score=28.02 Aligned_cols=74 Identities=15% Similarity=0.130 Sum_probs=48.3
Q ss_pred EEcCHHHHHHHHHhhCCCccEEEEcCCCC-----------CCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHc
Q 044790 5 AVENGLQAWKILEDLMDQIDLVLTEVLMP-----------CLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSK 73 (162)
Q Consensus 5 ~a~~~~eal~~l~~~~~~~DlvllD~~mp-----------~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~ 73 (162)
.+.+.+.|..+.+. .+|.|++.+.-. +...+.++..++.......+|||.-..-.....+.+|+.+
T Consensus 304 ~v~t~e~a~~~~~a---Gad~i~vg~g~gsi~~~~~~~g~g~p~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kala~ 380 (511)
T 3usb_A 304 NVATAEATKALIEA---GANVVKVGIGPGSICTTRVVAGVGVPQLTAVYDCATEARKHGIPVIADGGIKYSGDMVKALAA 380 (511)
T ss_dssp EECSHHHHHHHHHH---TCSEEEECSSCSTTCCHHHHHCCCCCHHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHT
T ss_pred eeccHHHHHHHHHh---CCCEEEECCCCccccccccccCCCCCcHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHh
Confidence 35566777666554 678888743211 1233455544432211136999998888899999999999
Q ss_pred CCceEEeC
Q 044790 74 GAVYFLVK 81 (162)
Q Consensus 74 Ga~~~l~K 81 (162)
||+..+.=
T Consensus 381 GA~~V~vG 388 (511)
T 3usb_A 381 GAHVVMLG 388 (511)
T ss_dssp TCSEEEES
T ss_pred Cchhheec
Confidence 99998653
No 218
>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}
Probab=72.73 E-value=7.1 Score=30.17 Aligned_cols=63 Identities=16% Similarity=0.158 Sum_probs=45.2
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCH--HHHHHHHHHHHHh
Q 044790 21 DQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRK--NELQNLWQHVWRK 98 (162)
Q Consensus 21 ~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~--~~L~~~i~~~l~~ 98 (162)
.++|+|+||+- ..+|...++..|... -.+.+...+.-|...|+.|=+.+ +++++.+..+-++
T Consensus 159 ~~~D~ivcDig--eSs~~~~ve~~Rtl~--------------vLel~~~wL~~~~~~f~~KVl~pY~~~v~e~l~~lq~~ 222 (321)
T 3lkz_A 159 ECCDTLLCDIG--ESSSSAEVEEHRTIR--------------VLEMVEDWLHRGPREFCVKVLCPYMPKVIEKMELLQRR 222 (321)
T ss_dssp CCCSEEEECCC--CCCSCHHHHHHHHHH--------------HHHHHHHHHTTCCCEEEEEESCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECc--cCCCChhhhhhHHHH--------------HHHHHHHHhccCCCcEEEEEcCCCChHHHHHHHHHHHH
Confidence 56899999997 666666666665432 13566777888877999997777 7777777766555
Q ss_pred c
Q 044790 99 C 99 (162)
Q Consensus 99 ~ 99 (162)
+
T Consensus 223 f 223 (321)
T 3lkz_A 223 Y 223 (321)
T ss_dssp H
T ss_pred h
Confidence 3
No 219
>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A
Probab=72.65 E-value=11 Score=27.82 Aligned_cols=60 Identities=17% Similarity=0.178 Sum_probs=41.7
Q ss_pred HHHHHHHHhhCCCccEEEEcCCCCC--CCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeC
Q 044790 10 LQAWKILEDLMDQIDLVLTEVLMPC--LSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVK 81 (162)
Q Consensus 10 ~eal~~l~~~~~~~DlvllD~~mp~--~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~K 81 (162)
.++++.+.+ ...|+|++.....- -+-.+++++||+ ..+|+|++.... ..+..|+|+|+..
T Consensus 26 ~~~l~~~~~--~GtDaI~vGgs~gvt~~~~~~~v~~ik~----~~~Piil~p~~~------~~~~~gaD~il~p 87 (235)
T 3w01_A 26 DDDLDAICM--SQTDAIMIGGTDDVTEDNVIHLMSKIRR----YPLPLVLEISNI------ESVMPGFDFYFVP 87 (235)
T ss_dssp HHHHHHHHT--SSCSEEEECCSSCCCHHHHHHHHHHHTT----SCSCEEEECCCS------TTCCTTCSEEEEE
T ss_pred HHHHHHHHH--cCCCEEEECCcCCcCHHHHHHHHHHhcC----cCCCEEEecCCH------HHhhcCCCEEEEc
Confidence 356666666 67999999875422 234566677765 489999999853 2246699999876
No 220
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=72.63 E-value=16 Score=26.88 Aligned_cols=84 Identities=11% Similarity=0.064 Sum_probs=51.5
Q ss_pred EEcCHHHHHHHHHhhC-CCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCC
Q 044790 5 AVENGLQAWKILEDLM-DQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPI 83 (162)
Q Consensus 5 ~a~~~~eal~~l~~~~-~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~ 83 (162)
...+.++++++.+..- ..+.+|=+.+. ..++.+.++.|++.- +. .+|-...--..+.+..+.++|++-.+. |-
T Consensus 41 r~~~~~~a~~~a~al~~gGi~~iEvt~~--t~~a~e~I~~l~~~~--~~-~~iGaGTVlt~~~a~~Ai~AGA~fIvs-P~ 114 (232)
T 4e38_A 41 AIDNAEDIIPLGKVLAENGLPAAEITFR--SDAAVEAIRLLRQAQ--PE-MLIGAGTILNGEQALAAKEAGATFVVS-PG 114 (232)
T ss_dssp CCSSGGGHHHHHHHHHHTTCCEEEEETT--STTHHHHHHHHHHHC--TT-CEEEEECCCSHHHHHHHHHHTCSEEEC-SS
T ss_pred EcCCHHHHHHHHHHHHHCCCCEEEEeCC--CCCHHHHHHHHHHhC--CC-CEEeECCcCCHHHHHHHHHcCCCEEEe-CC
Confidence 3344555555443210 46676666554 446899999998753 44 344444456789999999999976655 54
Q ss_pred CHHHHHHHHHH
Q 044790 84 RKNELQNLWQH 94 (162)
Q Consensus 84 ~~~~L~~~i~~ 94 (162)
...++....++
T Consensus 115 ~~~~vi~~~~~ 125 (232)
T 4e38_A 115 FNPNTVRACQE 125 (232)
T ss_dssp CCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 44455554443
No 221
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Probab=71.80 E-value=31 Score=26.35 Aligned_cols=62 Identities=16% Similarity=0.125 Sum_probs=46.3
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeC
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVK 81 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~K 81 (162)
+..+.++.+.+ ..+|+|.+....| .+++++++.. .++|+... ...+....+.+.|++.++.-
T Consensus 90 ~~~~~~~~~~~--~g~d~V~l~~g~p----~~~~~~l~~~----g~~v~~~v--~s~~~a~~a~~~GaD~i~v~ 151 (326)
T 3bo9_A 90 WADDLVKVCIE--EKVPVVTFGAGNP----TKYIRELKEN----GTKVIPVV--ASDSLARMVERAGADAVIAE 151 (326)
T ss_dssp THHHHHHHHHH--TTCSEEEEESSCC----HHHHHHHHHT----TCEEEEEE--SSHHHHHHHHHTTCSCEEEE
T ss_pred CHHHHHHHHHH--CCCCEEEECCCCc----HHHHHHHHHc----CCcEEEEc--CCHHHHHHHHHcCCCEEEEE
Confidence 44677787777 7899999987766 5778888763 56666543 35677888999999988873
No 222
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=71.71 E-value=20 Score=28.01 Aligned_cols=65 Identities=20% Similarity=0.206 Sum_probs=44.2
Q ss_pred HHHHHHHHhhCCCccEEEEcCCCCCCCH-HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 10 LQAWKILEDLMDQIDLVLTEVLMPCLSG-IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 10 ~eal~~l~~~~~~~DlvllD~~mp~~~g-~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
.+.++.+.+ ..+|+|.+|........ .+.++++++.. .+|||+-. ....+.+..+.++|++.+..
T Consensus 107 ~e~a~~l~e--aGad~I~ld~a~G~~~~~~~~i~~i~~~~---~~~Vivg~-v~t~e~A~~l~~aGaD~I~V 172 (361)
T 3khj_A 107 IERAKLLVE--AGVDVIVLDSAHGHSLNIIRTLKEIKSKM---NIDVIVGN-VVTEEATKELIENGADGIKV 172 (361)
T ss_dssp HHHHHHHHH--TTCSEEEECCSCCSBHHHHHHHHHHHHHC---CCEEEEEE-ECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHH--cCcCeEEEeCCCCCcHHHHHHHHHHHHhc---CCcEEEcc-CCCHHHHHHHHHcCcCEEEE
Confidence 444555555 57999999876543332 46677777642 67877622 24678888999999998876
No 223
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*
Probab=70.72 E-value=19 Score=27.14 Aligned_cols=68 Identities=10% Similarity=0.111 Sum_probs=41.7
Q ss_pred CHHHHHHHHHhhCCCcc-EEEEcCCCCCCCH-----------HHHHHHHHccCCCCCCcEEEEecCC-CHHH----HHHH
Q 044790 8 NGLQAWKILEDLMDQID-LVLTEVLMPCLSG-----------IGLLRKIMNHKTCKNIPVIMMSSHD-SMSI----VFKC 70 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~D-lvllD~~mp~~~g-----------~~~~~~ir~~~~~~~~piI~lt~~~-~~~~----~~~a 70 (162)
+..++.+.+.+ ..+| .|-+.+..|...| .++++.+|+. ..+||++-.... +.+. +..+
T Consensus 107 ~~~~~a~~~~~--~g~d~~iein~~~P~~~g~~~~g~~~e~~~~iv~~vr~~---~~~Pv~vKi~~~~~~~~~~~~a~~~ 181 (311)
T 1jub_A 107 ENIAMLKKIQE--SDFSGITELNLSCPNVPGEPQLAYDFEATEKLLKEVFTF---FTKPLGVKLPPYFDLVHFDIMAEIL 181 (311)
T ss_dssp HHHHHHHHHHH--SCCCSEEEEESCCCCSSSCCCGGGCHHHHHHHHHHHTTT---CCSCEEEEECCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--cCCCeEEEEeccCCCCCCcccccCCHHHHHHHHHHHHHh---cCCCEEEEECCCCCHHHHHHHHHHH
Confidence 34555666666 6789 8888876555321 4566777654 367888754432 3222 4556
Q ss_pred HHcCCceEEe
Q 044790 71 LSKGAVYFLV 80 (162)
Q Consensus 71 ~~~Ga~~~l~ 80 (162)
.+.|++.++.
T Consensus 182 ~~~G~d~i~v 191 (311)
T 1jub_A 182 NQFPLTYVNS 191 (311)
T ss_dssp TTSCCCEEEE
T ss_pred HHcCCcEEEe
Confidence 6779988754
No 224
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A*
Probab=70.15 E-value=15 Score=30.32 Aligned_cols=39 Identities=10% Similarity=0.217 Sum_probs=29.7
Q ss_pred HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 38 IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 38 ~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
++.+++||+.. .+||++=.. ...+.+..+.+.|++.++.
T Consensus 332 ~~~i~~lr~~~---~~PvivKgv-~~~e~A~~a~~aGad~I~v 370 (511)
T 1kbi_A 332 WKDIEELKKKT---KLPIVIKGV-QRTEDVIKAAEIGVSGVVL 370 (511)
T ss_dssp HHHHHHHHHHC---SSCEEEEEE-CSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHh---CCcEEEEeC-CCHHHHHHHHHcCCCEEEE
Confidence 67788888753 688886422 2377889999999999987
No 225
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=70.12 E-value=26 Score=27.60 Aligned_cols=66 Identities=18% Similarity=0.201 Sum_probs=44.0
Q ss_pred HHHHHHHHhhCCCccEEEEcCCCCCC-CHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 10 LQAWKILEDLMDQIDLVLTEVLMPCL-SGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 10 ~eal~~l~~~~~~~DlvllD~~mp~~-~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
.+.++.+.+ ..+|+|.++...... .-+++++++|+.. +.+||++-. -...+.+..+.+.|++.++.
T Consensus 155 ~~~a~~~~~--~G~d~i~i~~~~g~~~~~~e~i~~ir~~~--~~~pviv~~-v~~~~~a~~a~~~Gad~I~v 221 (404)
T 1eep_A 155 IERVEELVK--AHVDILVIDSAHGHSTRIIELIKKIKTKY--PNLDLIAGN-IVTKEAALDLISVGADCLKV 221 (404)
T ss_dssp HHHHHHHHH--TTCSEEEECCSCCSSHHHHHHHHHHHHHC--TTCEEEEEE-ECSHHHHHHHHTTTCSEEEE
T ss_pred HHHHHHHHH--CCCCEEEEeCCCCChHHHHHHHHHHHHHC--CCCeEEEcC-CCcHHHHHHHHhcCCCEEEE
Confidence 344455555 578999886433221 2467788888753 478888622 23577888999999998877
No 226
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=70.08 E-value=23 Score=25.79 Aligned_cols=82 Identities=11% Similarity=0.169 Sum_probs=49.7
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCC----CC-CCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCC
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLM----PC-LSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKP 82 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~m----p~-~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP 82 (162)
+-.++++.+ + ...|.+=+|++- |. .-|..+++.||... ...+-+-+++.. ...++..+.++||+.+..-.
T Consensus 14 ~l~~~i~~~-~--~gad~lHvDvmDG~fvpn~t~G~~~v~~lr~~~-~~~~dvhLmv~d-p~~~i~~~~~aGAd~itvh~ 88 (231)
T 3ctl_A 14 KFKEQIEFI-D--SHADYFHIDIMDGHFVPNLTLSPFFVSQVKKLA-TKPLDCHLMVTR-PQDYIAQLARAGADFITLHP 88 (231)
T ss_dssp GHHHHHHHH-H--TTCSCEEEEEECSSSSSCCCBCHHHHHHHHTTC-CSCEEEEEESSC-GGGTHHHHHHHTCSEEEECG
T ss_pred hHHHHHHHH-H--cCCCEEEEEEEeCccCccchhcHHHHHHHHhcc-CCcEEEEEEecC-HHHHHHHHHHcCCCEEEECc
Confidence 556777888 5 455655444321 22 35889999999753 123445566653 34467889999999887655
Q ss_pred CC-HHHHHHHHHH
Q 044790 83 IR-KNELQNLWQH 94 (162)
Q Consensus 83 ~~-~~~L~~~i~~ 94 (162)
.. ...+.+.++.
T Consensus 89 Ea~~~~~~~~i~~ 101 (231)
T 3ctl_A 89 ETINGQAFRLIDE 101 (231)
T ss_dssp GGCTTTHHHHHHH
T ss_pred ccCCccHHHHHHH
Confidence 44 2234444443
No 227
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=69.80 E-value=22 Score=27.80 Aligned_cols=73 Identities=16% Similarity=0.110 Sum_probs=48.0
Q ss_pred EEcCHHHHHHHHHhhCCCccEEEEcCCC-----------CCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHc
Q 044790 5 AVENGLQAWKILEDLMDQIDLVLTEVLM-----------PCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSK 73 (162)
Q Consensus 5 ~a~~~~eal~~l~~~~~~~DlvllD~~m-----------p~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~ 73 (162)
.+.+.++|..+++ ...|.|.+.+.- .+...++.+..++.......+|||.-..-...+.+.+++.+
T Consensus 152 ~v~t~e~A~~l~~---aGaD~I~VG~~~Gs~~~tr~~~g~g~p~~~~i~~v~~~~~~~~iPVIA~GGI~~~~di~kala~ 228 (361)
T 3khj_A 152 NVVTEEATKELIE---NGADGIKVGIGPGSICTTRIVAGVGVPQITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAV 228 (361)
T ss_dssp EECSHHHHHHHHH---TTCSEEEECSSCCTTCCHHHHTCBCCCHHHHHHHHHHHHHHHTCCEEEESCCCSHHHHHHHHHH
T ss_pred cCCCHHHHHHHHH---cCcCEEEEecCCCcCCCcccccCCCCCcHHHHHHHHHHHhhcCCeEEEECCCCCHHHHHHHHHc
Confidence 4567777766655 478999884211 01234555555533111136899988887789999999999
Q ss_pred CCceEEe
Q 044790 74 GAVYFLV 80 (162)
Q Consensus 74 Ga~~~l~ 80 (162)
||+....
T Consensus 229 GAd~V~v 235 (361)
T 3khj_A 229 GASSVMI 235 (361)
T ss_dssp TCSEEEE
T ss_pred CCCEEEE
Confidence 9998753
No 228
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=69.77 E-value=19 Score=27.29 Aligned_cols=55 Identities=5% Similarity=0.149 Sum_probs=41.6
Q ss_pred HHHHHHHHccCCCCC-CcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHH
Q 044790 38 IGLLRKIMNHKTCKN-IPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVW 96 (162)
Q Consensus 38 ~~~~~~ir~~~~~~~-~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l 96 (162)
.+.++..|+.. +. .+|.+-. ...+.+.++++.|++-++.-+++++.+...++.+-
T Consensus 180 ~~av~~ar~~~--~~~~~I~VEV--~tleea~eA~~aGaD~I~LDn~~~e~l~~av~~l~ 235 (285)
T 1o4u_A 180 ERAVQEVRKII--PFTTKIEVEV--ENLEDALRAVEAGADIVMLDNLSPEEVKDISRRIK 235 (285)
T ss_dssp HHHHHHHHTTS--CTTSCEEEEE--SSHHHHHHHHHTTCSEEEEESCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC--CCCceEEEEe--CCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhh
Confidence 34567777654 44 5666543 35788999999999999899999999998887754
No 229
>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*
Probab=69.75 E-value=25 Score=27.28 Aligned_cols=65 Identities=6% Similarity=0.067 Sum_probs=45.5
Q ss_pred HHHHHHHHhhCCCccEEEEcCCCC--CC----------CHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCce
Q 044790 10 LQAWKILEDLMDQIDLVLTEVLMP--CL----------SGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVY 77 (162)
Q Consensus 10 ~eal~~l~~~~~~~DlvllD~~mp--~~----------~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~ 77 (162)
.+..+.+.+ ..+|.|.+.-... +. -.+++++.|++.- +.+|||.-..-.+.+.+.+++. |++.
T Consensus 147 ~~~a~~l~~--aG~d~I~V~~r~~~~g~~g~~~~~~~~~~~~~i~~ik~~~--~~iPVianGgI~s~eda~~~l~-GaD~ 221 (350)
T 3b0p_A 147 AQSVEAMAE--AGVKVFVVHARSALLALSTKANREIPPLRHDWVHRLKGDF--PQLTFVTNGGIRSLEEALFHLK-RVDG 221 (350)
T ss_dssp HHHHHHHHH--TTCCEEEEECSCBC----------CCCCCHHHHHHHHHHC--TTSEEEEESSCCSHHHHHHHHT-TSSE
T ss_pred HHHHHHHHH--cCCCEEEEecCchhcccCcccccCCCcccHHHHHHHHHhC--CCCeEEEECCcCCHHHHHHHHh-CCCE
Confidence 344455666 6789888754321 11 1377888888753 5799998888888999999998 9987
Q ss_pred EE
Q 044790 78 FL 79 (162)
Q Consensus 78 ~l 79 (162)
..
T Consensus 222 V~ 223 (350)
T 3b0p_A 222 VM 223 (350)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 230
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=69.70 E-value=6.3 Score=28.52 Aligned_cols=70 Identities=13% Similarity=0.025 Sum_probs=47.0
Q ss_pred CHHHHHHHHHhhCCCccEEEE--cCCCCC-CC-HHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCC
Q 044790 8 NGLQAWKILEDLMDQIDLVLT--EVLMPC-LS-GIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKP 82 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~Dlvll--D~~mp~-~~-g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP 82 (162)
..++.++.+.+ ..||+|.+ ...|.. +. --++++.+++......+||++-.+....+. +.+.|++.|-.-.
T Consensus 131 p~e~iv~~~~~--~~~d~v~l~~S~l~~~~~~~~~~~i~~l~~~~~~~~v~v~vGG~~~~~~~---a~~iGad~~~~dA 204 (215)
T 3ezx_A 131 LNENVVEEAAK--HKGEKVLLVGSALMTTSMLGQKDLMDRLNEEKLRDSVKCMFGGAPVSDKW---IEEIGADATAENA 204 (215)
T ss_dssp CHHHHHHHHHH--TTTSCEEEEEECSSHHHHTHHHHHHHHHHHTTCGGGSEEEEESSSCCHHH---HHHHTCCBCCSSH
T ss_pred CHHHHHHHHHH--cCCCEEEEEchhcccCcHHHHHHHHHHHHHcCCCCCCEEEEECCCCCHHH---HHHhCCeEEECCH
Confidence 56777888888 89999999 877742 22 244667777754112678776666566543 4467999886443
No 231
>1k1e_A Deoxy-D-mannose-octulosonate 8-phosphate phosphat; structural genomics, KDO 8-P phosphatase, structure function project, S2F; HET: MES; 1.67A {Haemophilus influenzae RD} SCOP: c.108.1.5 PDB: 1j8d_A*
Probab=69.17 E-value=24 Score=23.96 Aligned_cols=52 Identities=17% Similarity=0.149 Sum_probs=37.4
Q ss_pred HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHH
Q 044790 38 IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQ 93 (162)
Q Consensus 38 ~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~ 93 (162)
.++++.+++ ..++++++|..........+-..|...|+....+..+.+..+.
T Consensus 41 ~~~l~~L~~----~G~~~~i~Tg~~~~~~~~~~~~lgl~~~~~~~k~k~~~~~~~~ 92 (180)
T 1k1e_A 41 GLGIKMLMD----ADIQVAVLSGRDSPILRRRIADLGIKLFFLGKLEKETACFDLM 92 (180)
T ss_dssp HHHHHHHHH----TTCEEEEEESCCCHHHHHHHHHHTCCEEEESCSCHHHHHHHHH
T ss_pred HHHHHHHHH----CCCeEEEEeCCCcHHHHHHHHHcCCceeecCCCCcHHHHHHHH
Confidence 467888876 4689999999877776666667899999876555555544443
No 232
>2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae}
Probab=68.71 E-value=19 Score=26.68 Aligned_cols=78 Identities=10% Similarity=0.120 Sum_probs=51.5
Q ss_pred HHHHHHHhhCCCcc-EEEEcCCCCCC-C--HHHHHHHHHccCCCC---CCcEEEEecCCCHHHHHHHHHc--CCceEE--
Q 044790 11 QAWKILEDLMDQID-LVLTEVLMPCL-S--GIGLLRKIMNHKTCK---NIPVIMMSSHDSMSIVFKCLSK--GAVYFL-- 79 (162)
Q Consensus 11 eal~~l~~~~~~~D-lvllD~~mp~~-~--g~~~~~~ir~~~~~~---~~piI~lt~~~~~~~~~~a~~~--Ga~~~l-- 79 (162)
+.++.+++ . .+ +++.|+.-.++ . -+++++.|.+.- + .+|||.-..-...+.+.++++. |+++.+
T Consensus 162 e~a~~~~~--~-a~~il~t~i~~dG~~~G~d~eli~~l~~~~--~~~~~iPVIasGGi~s~ed~~~l~~~~~G~~gvivg 236 (260)
T 2agk_A 162 DTFRELRK--Y-TNEFLIHAADVEGLCGGIDELLVSKLFEWT--KDYDDLKIVYAGGAKSVDDLKLVDELSHGKVDLTFG 236 (260)
T ss_dssp HHHHHHTT--T-CSEEEEEC-------CCCCHHHHHHHHHHH--TTCSSCEEEEESCCCCTHHHHHHHHHHTTCEEEECC
T ss_pred HHHHHHHH--h-cCEEEEEeeccccCcCCCCHHHHHHHHHhh--cccCCceEEEeCCCCCHHHHHHHHHhcCCCCEEEee
Confidence 56666666 5 55 44557644222 2 378888887642 2 7999988888899999999988 998853
Q ss_pred ------eCC-CCHHHHHHHHH
Q 044790 80 ------VKP-IRKNELQNLWQ 93 (162)
Q Consensus 80 ------~KP-~~~~~L~~~i~ 93 (162)
..| +...++.+.++
T Consensus 237 ~al~l~~g~~~~~~~~~~~~~ 257 (260)
T 2agk_A 237 SSLDIFGGNLVKFEDCCRWNE 257 (260)
T ss_dssp TTBGGGTCSSBCHHHHHHHHH
T ss_pred CCHHHcCCCCCCHHHHHHHHH
Confidence 234 77777776654
No 233
>3s83_A Ggdef family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, signaling protein; HET: MSE; 1.34A {Caulobacter crescentus} PDB: 3u2e_A
Probab=68.10 E-value=4.9 Score=29.41 Aligned_cols=86 Identities=10% Similarity=0.150 Sum_probs=54.4
Q ss_pred EcCHHHHHHHHHhhCCCccEEEEcCCC-----CCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCc---e
Q 044790 6 VENGLQAWKILEDLMDQIDLVLTEVLM-----PCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAV---Y 77 (162)
Q Consensus 6 a~~~~eal~~l~~~~~~~DlvllD~~m-----p~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~---~ 77 (162)
+..+...+..+.. -+||.|=+|..+ .......+++.|........+.|| ...-+..+....+.+.|++ +
T Consensus 160 fG~g~ssl~~L~~--l~~d~iKiD~~~v~~~~~~~~~~~~~~~i~~~a~~~g~~vi-aeGVEt~~~~~~l~~lG~~~~QG 236 (259)
T 3s83_A 160 FGTGFSSLSYLTR--LPFDTLKIDRYFVRTMGNNAGSAKIVRSVVKLGQDLDLEVV-AEGVENAEMAHALQSLGCDYGQG 236 (259)
T ss_dssp C---CHHHHHHHH--SCCCEEEECHHHHHHTTTCHHHHHHHHHHHHHHHHTTCEEE-ECCCCSHHHHHHHHHHTCCEECB
T ss_pred CCCCchhHHHHHh--CCCCEEEECHHHHhhhhcCchHHHHHHHHHHHHHHCCCeEE-EEeCCCHHHHHHHHhcCCCEeec
Confidence 3455566777777 789999998532 122223445555332211345444 6667788888888889987 3
Q ss_pred E-EeCCCCHHHHHHHHHH
Q 044790 78 F-LVKPIRKNELQNLWQH 94 (162)
Q Consensus 78 ~-l~KP~~~~~L~~~i~~ 94 (162)
| +.||...+++...+..
T Consensus 237 ~~~~~p~~~~~~~~~l~~ 254 (259)
T 3s83_A 237 FGYAPALSPQEAEVYLNE 254 (259)
T ss_dssp TTTBCCBCHHHHHHHHHH
T ss_pred CcccCCCCHHHHHHHHHH
Confidence 3 7799999999887764
No 234
>4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A*
Probab=67.98 E-value=12 Score=29.27 Aligned_cols=61 Identities=13% Similarity=0.024 Sum_probs=47.3
Q ss_pred HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe------C-CCCHHHHHHHHHHHHHhcc
Q 044790 38 IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV------K-PIRKNELQNLWQHVWRKCH 100 (162)
Q Consensus 38 ~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~------K-P~~~~~L~~~i~~~l~~~~ 100 (162)
++++++|++.. +.+|||....-...+.+.+++..||+.... . |.-..++..-|...+....
T Consensus 265 ~~~i~~v~~~~--~~ipII~~GGI~s~~da~~~l~aGAd~V~vgra~l~~GP~~~~~i~~~l~~~m~~~G 332 (354)
T 4ef8_A 265 LANINAFYRRC--PGKLIFGCGGVYTGEDAFLHVLAGASMVQVGTALQEEGPSIFERLTSELLGVMAKKR 332 (354)
T ss_dssp HHHHHHHHHHC--TTSEEEEESCCCSHHHHHHHHHHTEEEEEECHHHHHHCTTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhC--CCCCEEEECCcCCHHHHHHHHHcCCCEEEEhHHHHHhCHHHHHHHHHHHHHHHHHcC
Confidence 77888888753 589999999999999999999999987643 3 6656677777777666543
No 235
>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*
Probab=67.07 E-value=12 Score=28.34 Aligned_cols=62 Identities=16% Similarity=0.198 Sum_probs=44.2
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCH--HHHHHHHHHHHHh
Q 044790 21 DQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRK--NELQNLWQHVWRK 98 (162)
Q Consensus 21 ~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~--~~L~~~i~~~l~~ 98 (162)
.++|+||+|+.- . +|...+...|... -.+.+.+.+.-|-..|+.|=|.. +++.+.++.+-+.
T Consensus 138 ~~~DvVLSDMAP-n-SG~~~vD~~Rs~~--------------aL~~A~~~Lk~gG~~FvvKVFqg~~~~~~~~l~~lk~~ 201 (269)
T 2px2_A 138 EISDTLLCDIGE-S-SPSAEIEEQRTLR--------------ILEMVSDWLSRGPKEFCIKILCPYMPKVIEKLESLQRR 201 (269)
T ss_dssp CCCSEEEECCCC-C-CSCHHHHHHHHHH--------------HHHHHHHHHTTCCSEEEEEESCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEeCCCC-C-CCccHHHHHHHHH--------------HHHHHHHHhhcCCcEEEEEECCCCchHHHHHHHHHHHH
Confidence 479999999755 3 7877777777642 23555667777767899999887 7787766655444
No 236
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=67.06 E-value=14 Score=26.83 Aligned_cols=67 Identities=19% Similarity=0.124 Sum_probs=43.0
Q ss_pred CHHHHHHHHHhhCCCcc-EEEEcCCCCCCC---------HHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCce
Q 044790 8 NGLQAWKILEDLMDQID-LVLTEVLMPCLS---------GIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVY 77 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~D-lvllD~~mp~~~---------g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~ 77 (162)
+..+.++.+.. . .| +|.+ +..++.. .++.++++++. ..+||++-.+-...+.+.+++..|++.
T Consensus 144 t~~e~~~~~~~--~-~d~~i~~-~~~~G~~g~~~~~~~~~~~~i~~l~~~---~~~pi~~~GGI~~~e~i~~~~~~Gad~ 216 (248)
T 1geq_A 144 TPDERLKVIDD--M-TTGFVYL-VSLYGTTGAREEIPKTAYDLLRRAKRI---CRNKVAVGFGVSKREHVVSLLKEGANG 216 (248)
T ss_dssp CCHHHHHHHHH--H-CSSEEEE-ECCC-------CCCHHHHHHHHHHHHH---CSSCEEEESCCCSHHHHHHHHHTTCSE
T ss_pred CHHHHHHHHHh--c-CCCeEEE-EECCccCCCCCCCChhHHHHHHHHHhh---cCCCEEEEeecCCHHHHHHHHHcCCCE
Confidence 44566666655 2 34 5533 2225433 34567777764 268988877777778899999999999
Q ss_pred EEeC
Q 044790 78 FLVK 81 (162)
Q Consensus 78 ~l~K 81 (162)
++.=
T Consensus 217 vivG 220 (248)
T 1geq_A 217 VVVG 220 (248)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9754
No 237
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=66.85 E-value=49 Score=26.92 Aligned_cols=72 Identities=14% Similarity=0.114 Sum_probs=49.0
Q ss_pred EcCHHHHHHHHHhhCCCccEEEEcCCC-----------CCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcC
Q 044790 6 VENGLQAWKILEDLMDQIDLVLTEVLM-----------PCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKG 74 (162)
Q Consensus 6 a~~~~eal~~l~~~~~~~DlvllD~~m-----------p~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~G 74 (162)
+.+.++|..+.+ ...|.|.+.+.- .+...++++..+.+......+|||.-..-...+.+.+++.+|
T Consensus 278 v~t~e~a~~l~~---aGaD~I~vg~g~Gs~~~t~~~~g~g~p~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kal~~G 354 (490)
T 4avf_A 278 IATAEAAKALAE---AGADAVKVGIGPGSICTTRIVAGVGVPQISAIANVAAALEGTGVPLIADGGIRFSGDLAKAMVAG 354 (490)
T ss_dssp ECSHHHHHHHHH---TTCSEEEECSSCSTTCHHHHHTCBCCCHHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHHHT
T ss_pred eCcHHHHHHHHH---cCCCEEEECCCCCcCCCccccCCCCccHHHHHHHHHHHhccCCCcEEEeCCCCCHHHHHHHHHcC
Confidence 567777766555 478999874211 112345556666542111479999988888999999999999
Q ss_pred CceEEe
Q 044790 75 AVYFLV 80 (162)
Q Consensus 75 a~~~l~ 80 (162)
|+....
T Consensus 355 Ad~V~v 360 (490)
T 4avf_A 355 AYCVMM 360 (490)
T ss_dssp CSEEEE
T ss_pred CCeeee
Confidence 998754
No 238
>3mn1_A Probable YRBI family phosphatase; structural genomics, PSI, protein structure initiative, NYSG phosphatase; 1.80A {Pseudomonas syringae PV} PDB: 3nrj_A
Probab=66.44 E-value=29 Score=23.87 Aligned_cols=51 Identities=8% Similarity=0.062 Sum_probs=37.3
Q ss_pred HHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHH
Q 044790 40 LLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQH 94 (162)
Q Consensus 40 ~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~ 94 (162)
+++.+++ ..+++.++|+.........+-..|..+|+....+..+.+..+.+
T Consensus 54 ~l~~L~~----~g~~~~i~T~~~~~~~~~~~~~lgl~~~f~~~~~K~~~~~~~~~ 104 (189)
T 3mn1_A 54 GIKMLIA----SGVTTAIISGRKTAIVERRAKSLGIEHLFQGREDKLVVLDKLLA 104 (189)
T ss_dssp HHHHHHH----TTCEEEEECSSCCHHHHHHHHHHTCSEEECSCSCHHHHHHHHHH
T ss_pred HHHHHHH----CCCEEEEEECcChHHHHHHHHHcCCHHHhcCcCChHHHHHHHHH
Confidence 6777776 46899999998877776677778999998876555544444433
No 239
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=66.37 E-value=19 Score=27.27 Aligned_cols=53 Identities=17% Similarity=0.218 Sum_probs=38.1
Q ss_pred HHHHHHHccCCCCC-CcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHH
Q 044790 39 GLLRKIMNHKTCKN-IPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHV 95 (162)
Q Consensus 39 ~~~~~ir~~~~~~~-~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~ 95 (162)
+.++..|+.. +. .+|.+ +. ...+...++++.|++-++..|+.++.+...++.+
T Consensus 184 ~av~~ar~~~--~~~~~IgV-ev-~t~eea~eA~~aGaD~I~ld~~~~~~~k~av~~v 237 (286)
T 1x1o_A 184 EAVRRAKARA--PHYLKVEV-EV-RSLEELEEALEAGADLILLDNFPLEALREAVRRV 237 (286)
T ss_dssp HHHHHHHHHS--CTTSCEEE-EE-SSHHHHHHHHHHTCSEEEEESCCHHHHHHHHHHH
T ss_pred HHHHHHHHhC--CCCCEEEE-Ee-CCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Confidence 3566676653 34 44444 44 3478889999999998889999999988776653
No 240
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*
Probab=66.10 E-value=22 Score=27.64 Aligned_cols=56 Identities=11% Similarity=0.081 Sum_probs=39.6
Q ss_pred CccEEEEcCCCCCC-CHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 22 QIDLVLTEVLMPCL-SGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 22 ~~DlvllD~~mp~~-~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
.+|++.++...... .-++.+++||+.. +.+||++=+. ...+.+..+.++|++.+..
T Consensus 132 g~~~i~i~~~~g~~~~~~~~i~~lr~~~--~~~~vi~g~v-~t~e~A~~a~~aGaD~I~v 188 (351)
T 2c6q_A 132 QVKYICLDVANGYSEHFVEFVKDVRKRF--PQHTIMAGNV-VTGEMVEELILSGADIIKV 188 (351)
T ss_dssp TCCEEEEECSCTTBHHHHHHHHHHHHHC--TTSEEEEEEE-CSHHHHHHHHHTTCSEEEE
T ss_pred CCCEEEEEecCCCcHHHHHHHHHHHHhc--CCCeEEEEeC-CCHHHHHHHHHhCCCEEEE
Confidence 58888888654222 2467888888754 5788875332 3578889999999998844
No 241
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*
Probab=66.01 E-value=22 Score=26.63 Aligned_cols=65 Identities=14% Similarity=0.043 Sum_probs=44.3
Q ss_pred EEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHH----HHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEE
Q 044790 4 IAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLR----KIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFL 79 (162)
Q Consensus 4 ~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~----~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l 79 (162)
..+.+.+++.+.++. ..|.|.+|-.- .+.++ .++.. +++++|.+.. .-..+.+....+.|++.+-
T Consensus 187 vev~tlee~~~A~~a---GaD~I~ld~~~-----~~~l~~~v~~l~~~--~~~~~i~AsG-GI~~~ni~~~~~aGaD~i~ 255 (273)
T 2b7n_A 187 IECESFEEAKNAMNA---GADIVMCDNLS-----VLETKEIAAYRDAH--YPFVLLEASG-NISLESINAYAKSGVDAIS 255 (273)
T ss_dssp EEESSHHHHHHHHHH---TCSEEEEETCC-----HHHHHHHHHHHHHH--CTTCEEEEES-SCCTTTHHHHHTTTCSEEE
T ss_pred EEcCCHHHHHHHHHc---CCCEEEECCCC-----HHHHHHHHHHhhcc--CCCcEEEEEC-CCCHHHHHHHHHcCCcEEE
Confidence 467788888888765 58999999622 34443 33332 3567766544 4577888899999997664
No 242
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=65.73 E-value=42 Score=27.29 Aligned_cols=73 Identities=16% Similarity=0.177 Sum_probs=50.9
Q ss_pred EEcCHHHHHHHHHhhCCCccEEEEcCC--------------CCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHH
Q 044790 5 AVENGLQAWKILEDLMDQIDLVLTEVL--------------MPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKC 70 (162)
Q Consensus 5 ~a~~~~eal~~l~~~~~~~DlvllD~~--------------mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a 70 (162)
.+.+.++|..+.+. ..|.|.+... +|....+..+..++.. ..+|||....-.....+.++
T Consensus 303 ~v~t~~~a~~l~~a---Gad~I~vg~~~G~~~~t~~~~~~g~~~~~~~~~~~~~~~~---~~ipVia~GGI~~~~di~ka 376 (514)
T 1jcn_A 303 NVVTAAQAKNLIDA---GVDGLRVGMGCGSICITQEVMACGRPQGTAVYKVAEYARR---FGVPIIADGGIQTVGHVVKA 376 (514)
T ss_dssp EECSHHHHHHHHHH---TCSEEEECSSCSCCBTTBCCCSCCCCHHHHHHHHHHHHGG---GTCCEEEESCCCSHHHHHHH
T ss_pred ccchHHHHHHHHHc---CCCEEEECCCCCcccccccccCCCccchhHHHHHHHHHhh---CCCCEEEECCCCCHHHHHHH
Confidence 35677777666654 6898887431 1222345666777654 37999998888889999999
Q ss_pred HHcCCceE-EeCCC
Q 044790 71 LSKGAVYF-LVKPI 83 (162)
Q Consensus 71 ~~~Ga~~~-l~KP~ 83 (162)
+.+||+.. +-.++
T Consensus 377 la~GAd~V~iG~~~ 390 (514)
T 1jcn_A 377 LALGASTVMMGSLL 390 (514)
T ss_dssp HHTTCSEEEESTTT
T ss_pred HHcCCCeeeECHHH
Confidence 99999987 44443
No 243
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=65.61 E-value=23 Score=26.85 Aligned_cols=56 Identities=16% Similarity=0.139 Sum_probs=42.7
Q ss_pred HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHHH
Q 044790 38 IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVWR 97 (162)
Q Consensus 38 ~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 97 (162)
-+.++..|+.. +..+|.+-.. ..+.+.+++++|++-++.-.++++++...++.+-.
T Consensus 182 ~~av~~ar~~~--~~~~I~Vev~--t~eea~eal~aGaD~I~LDn~~~~~~~~~v~~l~~ 237 (284)
T 1qpo_A 182 VDALRAVRNAA--PDLPCEVEVD--SLEQLDAVLPEKPELILLDNFAVWQTQTAVQRRDS 237 (284)
T ss_dssp HHHHHHHHHHC--TTSCEEEEES--SHHHHHHHGGGCCSEEEEETCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC--CCCCEEEEeC--CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhhc
Confidence 34667777654 4457776554 47889999999999988999999999988887543
No 244
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=65.41 E-value=32 Score=26.62 Aligned_cols=79 Identities=13% Similarity=0.123 Sum_probs=54.1
Q ss_pred CEEEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 1 MAVIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 1 ~~v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
|+|..|++.+.+.+.+++ .++|++|+|-.+..-. .... ...++++++.....+ ...-...+.
T Consensus 49 ~~v~~ft~~e~~~~~~~~--~~~dilli~e~~~~~~--------~~~~--~~~~v~~l~~~~~~~------~~~~~~~i~ 110 (373)
T 3fkq_A 49 LEVYSFTDEKNAIESVKE--YRIDVLIAEEDFNIDK--------SEFK--RNCGLAYFTGTPGIE------LIKDEIAIC 110 (373)
T ss_dssp EEEEEESCHHHHHHHHHH--HTCSEEEEETTCCCCG--------GGGC--SSCEEEEEESCTTCC------EETTEEEEE
T ss_pred eEEEEECCHHHHHHHHhc--CCCCEEEEcchhhhhh--------hhhc--ccCcEEEEECCCCCC------cCCCCceee
Confidence 578899999999999998 7999999997765421 1111 345677776643221 111224688
Q ss_pred CCCCHHHHHHHHHHHHH
Q 044790 81 KPIRKNELQNLWQHVWR 97 (162)
Q Consensus 81 KP~~~~~L~~~i~~~l~ 97 (162)
|--+.+++...|.....
T Consensus 111 kyq~~~~i~~ei~~~~~ 127 (373)
T 3fkq_A 111 KYQRVDVIFKQILGVYS 127 (373)
T ss_dssp TTSCHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHh
Confidence 98889888877776653
No 245
>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ...
Probab=65.31 E-value=39 Score=26.44 Aligned_cols=60 Identities=12% Similarity=0.174 Sum_probs=42.3
Q ss_pred HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeC-------CCCHHHHHHHHHHHHHh
Q 044790 38 IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVK-------PIRKNELQNLWQHVWRK 98 (162)
Q Consensus 38 ~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~K-------P~~~~~L~~~i~~~l~~ 98 (162)
+++++.|++.- ...+|||....-...+.+.+++..||+....- |.-..++..-|...+..
T Consensus 285 ~~~v~~i~~~v-~~~ipvI~~GGI~s~~da~~~l~~GAd~V~vgra~l~~gP~~~~~i~~~l~~~m~~ 351 (367)
T 3zwt_A 285 TQTIREMYALT-QGRVPIIGVGGVSSGQDALEKIRAGASLVQLYTALTFWGPPVVGKVKRELEALLKE 351 (367)
T ss_dssp HHHHHHHHHHT-TTCSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHHHCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc-CCCceEEEECCCCCHHHHHHHHHcCCCEEEECHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 47788887642 13799999999999999999999999877422 43344555555554444
No 246
>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A
Probab=65.05 E-value=38 Score=24.80 Aligned_cols=80 Identities=14% Similarity=0.127 Sum_probs=53.3
Q ss_pred HHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCC--HHH----HHHHHHcCCceEEe---
Q 044790 10 LQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDS--MSI----VFKCLSKGAVYFLV--- 80 (162)
Q Consensus 10 ~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~--~~~----~~~a~~~Ga~~~l~--- 80 (162)
.++.+...+ ...|+|.+.. + -+++.+++++.. ..+||++..+-.. .+. +..+++.|++++..
T Consensus 169 ~~~a~~a~~--~Gad~i~~~~--~--~~~~~l~~i~~~---~~ipvva~GGi~~~~~~~~~~~~~~~~~~Ga~gv~vg~~ 239 (273)
T 2qjg_A 169 AHAARLGAE--LGADIVKTSY--T--GDIDSFRDVVKG---CPAPVVVAGGPKTNTDEEFLQMIKDAMEAGAAGVAVGRN 239 (273)
T ss_dssp HHHHHHHHH--TTCSEEEECC--C--SSHHHHHHHHHH---CSSCEEEECCSCCSSHHHHHHHHHHHHHHTCSEEECCHH
T ss_pred HHHHHHHHH--cCCCEEEECC--C--CCHHHHHHHHHh---CCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEeeHH
Confidence 344344555 6789998874 2 468888888764 3689999887663 444 66677899998743
Q ss_pred --CCCCHHHHHHHHHHHHHh
Q 044790 81 --KPIRKNELQNLWQHVWRK 98 (162)
Q Consensus 81 --KP~~~~~L~~~i~~~l~~ 98 (162)
+.-++.+....+...+.+
T Consensus 240 i~~~~~~~~~~~~l~~~~~~ 259 (273)
T 2qjg_A 240 IFQHDDVVGITRAVCKIVHE 259 (273)
T ss_dssp HHTSSSHHHHHHHHHHHHHH
T ss_pred hhCCCCHHHHHHHHHHHHhc
Confidence 334566666666666554
No 247
>3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans}
Probab=64.29 E-value=14 Score=28.78 Aligned_cols=61 Identities=10% Similarity=0.084 Sum_probs=43.7
Q ss_pred HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe-------CCCCHHHHHHHHHHHHHhc
Q 044790 38 IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV-------KPIRKNELQNLWQHVWRKC 99 (162)
Q Consensus 38 ~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~-------KP~~~~~L~~~i~~~l~~~ 99 (162)
++++++|++.- ...+|||....-...+.+.+++..||+.... -|.-..++..-|...+...
T Consensus 262 ~~~v~~i~~~~-~~~ipIIg~GGI~s~~da~~~l~aGAd~V~igra~~~~gP~~~~~i~~~L~~~l~~~ 329 (345)
T 3oix_A 262 LANVHAFYKRL-NPSIQIIGTGGVXTGRDAFEHILCGASMVQIGTALHQEGPQIFKRITKELXAIMTEK 329 (345)
T ss_dssp HHHHHHHHTTS-CTTSEEEEESSCCSHHHHHHHHHHTCSEEEESHHHHHHCTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc-CCCCcEEEECCCCChHHHHHHHHhCCCEEEEChHHHhcChHHHHHHHHHHHHHHHHc
Confidence 57788887642 1379999999999999999999999998632 2444455555565555543
No 248
>2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A
Probab=63.20 E-value=12 Score=28.36 Aligned_cols=89 Identities=11% Similarity=0.038 Sum_probs=56.0
Q ss_pred EEEcCHHHHHHHHHhhCCCccEEEEc---------------------------CCCC--------CCCHHHHHHHHHccC
Q 044790 4 IAVENGLQAWKILEDLMDQIDLVLTE---------------------------VLMP--------CLSGIGLLRKIMNHK 48 (162)
Q Consensus 4 ~~a~~~~eal~~l~~~~~~~DlvllD---------------------------~~mp--------~~~g~~~~~~ir~~~ 48 (162)
..+.+..++...+. ...|+|.+. +.-. ...+++++++++..
T Consensus 130 ~~~~~~~e~~~a~~---~Gad~V~~~G~~g~g~~~~~~~h~rt~~~~i~~l~gi~~~~~~~~~~~~~~~~~~i~~i~~~- 205 (305)
T 2nv1_A 130 CGCRDLGEATRRIA---EGASMLRTKGEPGTGNIVEAVRHMRKVNAQVRKVVAMSEDELMTEAKNLGAPYELLLQIKKD- 205 (305)
T ss_dssp EEESSHHHHHHHHH---TTCSEEEECCCTTSCCTHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHTCCHHHHHHHHHH-
T ss_pred EEeCCHHHHHHHHH---CCCCEEEeccccCccchHHHHhhhhhhhccchhhccccchhhhcccccccccHHHHHHHHHh-
Confidence 45667788888774 467888772 1101 11246777777764
Q ss_pred CCCCCcEE--EEecCCCHHHHHHHHHcCCceEEeCC-----CCHHHHHHHHHHHHHh
Q 044790 49 TCKNIPVI--MMSSHDSMSIVFKCLSKGAVYFLVKP-----IRKNELQNLWQHVWRK 98 (162)
Q Consensus 49 ~~~~~piI--~lt~~~~~~~~~~a~~~Ga~~~l~KP-----~~~~~L~~~i~~~l~~ 98 (162)
..+||+ ....-...+.+.+++..|+++++.=- -++......+...+..
T Consensus 206 --~~iPvi~~a~GGI~~~~d~~~~~~~GadgV~vGsai~~~~~p~~~~~~l~~~~~~ 260 (305)
T 2nv1_A 206 --GKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSDNPAKFAKAIVEATTH 260 (305)
T ss_dssp --TSCSSCEEBCSCCCSHHHHHHHHHTTCSCEEECGGGGGSSCHHHHHHHHHHHHHT
T ss_pred --cCCCEEEEeccCCCCHHHHHHHHHcCCCEEEEcHHHHcCCCHHHHHHHHHHHHHH
Confidence 368888 45555578889999999999885442 2444555555554443
No 249
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*
Probab=63.15 E-value=51 Score=25.57 Aligned_cols=75 Identities=13% Similarity=0.104 Sum_probs=49.6
Q ss_pred EEcCHHHHHHHHHhhCCCccEEEEcCCCCC------------CCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHH
Q 044790 5 AVENGLQAWKILEDLMDQIDLVLTEVLMPC------------LSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLS 72 (162)
Q Consensus 5 ~a~~~~eal~~l~~~~~~~DlvllD~~mp~------------~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~ 72 (162)
.+.+.++|....+. ..|.|++... ++ ..-+.++..+........+|||.-..-.....+.+++.
T Consensus 168 ~v~t~e~A~~a~~a---GaD~I~v~~g-~G~~~~~r~~~g~~~p~~~~l~~v~~~~~~~~ipvIa~GGI~~g~di~kAla 243 (351)
T 2c6q_A 168 NVVTGEMVEELILS---GADIIKVGIG-PGSVCTTRKKTGVGYPQLSAVMECADAAHGLKGHIISDGGCSCPGDVAKAFG 243 (351)
T ss_dssp EECSHHHHHHHHHT---TCSEEEECSS-CSTTBCHHHHHCBCCCHHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHH
T ss_pred eCCCHHHHHHHHHh---CCCEEEECCC-CCcCcCccccCCCCccHHHHHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHH
Confidence 46678888776654 6899977531 21 12234444443211113689998888889999999999
Q ss_pred cCCceE-EeCCC
Q 044790 73 KGAVYF-LVKPI 83 (162)
Q Consensus 73 ~Ga~~~-l~KP~ 83 (162)
+||+.. +-++|
T Consensus 244 lGA~~V~vG~~f 255 (351)
T 2c6q_A 244 AGADFVMLGGML 255 (351)
T ss_dssp TTCSEEEESTTT
T ss_pred cCCCceeccHHH
Confidence 999987 55565
No 250
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=63.02 E-value=64 Score=26.68 Aligned_cols=78 Identities=14% Similarity=0.070 Sum_probs=55.2
Q ss_pred HHHHHHHHhhCCCccEEEE-cCCC----CCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHH-cCCceEEe---
Q 044790 10 LQAWKILEDLMDQIDLVLT-EVLM----PCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLS-KGAVYFLV--- 80 (162)
Q Consensus 10 ~eal~~l~~~~~~~Dlvll-D~~m----p~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~-~Ga~~~l~--- 80 (162)
.+..+.+.+ ..++.||+ ++.- .+. -+++++.|++. ..+|||.-..-...+.+.++++ .|+++.+.
T Consensus 455 ~e~a~~~~~--~Ga~~il~t~~~~dG~~~G~-d~~li~~l~~~---~~iPVIasGGi~s~~d~~~~~~~~G~~gvivg~a 528 (555)
T 1jvn_A 455 WELTRACEA--LGAGEILLNCIDKDGSNSGY-DLELIEHVKDA---VKIPVIASSGAGVPEHFEEAFLKTRADACLGAGM 528 (555)
T ss_dssp HHHHHHHHH--TTCCEEEECCGGGTTTCSCC-CHHHHHHHHHH---CSSCEEECSCCCSHHHHHHHHHHSCCSEEEESHH
T ss_pred HHHHHHHHH--cCCCEEEEeCCCCCCCCCCC-CHHHHHHHHHh---CCccEEEECCCCCHHHHHHHHHhcCChHHHHHHH
Confidence 344455555 55776665 5432 333 37889999865 4799998888889999999998 79998754
Q ss_pred ---CCCCHHHHHHHHH
Q 044790 81 ---KPIRKNELQNLWQ 93 (162)
Q Consensus 81 ---KP~~~~~L~~~i~ 93 (162)
.++...++...++
T Consensus 529 ~~~~~~~~~e~~~~l~ 544 (555)
T 1jvn_A 529 FHRGEFTVNDVKEYLL 544 (555)
T ss_dssp HHTTSCCHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHH
Confidence 3777777777654
No 251
>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2
Probab=62.99 E-value=12 Score=26.47 Aligned_cols=72 Identities=14% Similarity=0.176 Sum_probs=42.9
Q ss_pred CccEEEEcCCCCCCCHH-------HHHHHHHccC--CCCCCcEEEEecCCCHHHHHHHHHcCCceEEe-----CCCCHHH
Q 044790 22 QIDLVLTEVLMPCLSGI-------GLLRKIMNHK--TCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV-----KPIRKNE 87 (162)
Q Consensus 22 ~~DlvllD~~mp~~~g~-------~~~~~ir~~~--~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~-----KP~~~~~ 87 (162)
..|.|+++...|+.+|. +-++.+|+.. ....+||++.-+- ..+.+.++.+.|++.++. +..++.+
T Consensus 131 ~~d~vl~~~~~~g~~g~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI-~~~~~~~~~~~Gad~vvvGsai~~~~d~~~ 209 (220)
T 2fli_A 131 LVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGV-DNKTIRACYEAGANVFVAGSYLFKASDLVS 209 (220)
T ss_dssp TCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHHHHTTCCCEEEEESSC-CTTTHHHHHHHTCCEEEESHHHHTSSCHHH
T ss_pred hCCEEEEEEECCCCcccccCHHHHHHHHHHHHHHHhcCCCceEEEECcC-CHHHHHHHHHcCCCEEEEChHHhCCCCHHH
Confidence 47888887766665552 3345555421 0025677655554 467777888999998854 3445555
Q ss_pred HHHHHHH
Q 044790 88 LQNLWQH 94 (162)
Q Consensus 88 L~~~i~~ 94 (162)
-.+.+++
T Consensus 210 a~~~~~~ 216 (220)
T 2fli_A 210 QVQTLRT 216 (220)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 252
>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans}
Probab=62.42 E-value=25 Score=27.63 Aligned_cols=69 Identities=10% Similarity=0.100 Sum_probs=47.9
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCC------C----CCCHH-HHHHHHHccCCCCCCcEEEEecC--CCHHHHHHHHHcC
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLM------P----CLSGI-GLLRKIMNHKTCKNIPVIMMSSH--DSMSIVFKCLSKG 74 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~m------p----~~~g~-~~~~~ir~~~~~~~~piI~lt~~--~~~~~~~~a~~~G 74 (162)
..+++.+.++. -..|.+.+.+.. | ...++ +.+++|++. ..+||++=-.. ...+.+..+.++|
T Consensus 156 ~~e~~~~~ve~--~~adal~ihln~~qe~~~p~Gd~~~~~~~~~I~~l~~~---~~~PVivK~vg~g~s~e~A~~l~~aG 230 (365)
T 3sr7_A 156 PYQAGLQAVRD--LQPLFLQVHINLMQELLMPEGEREFRSWKKHLSDYAKK---LQLPFILKEVGFGMDVKTIQTAIDLG 230 (365)
T ss_dssp CHHHHHHHHHH--HCCSCEEEEECHHHHHTSSSSCCCCHHHHHHHHHHHHH---CCSCEEEEECSSCCCHHHHHHHHHHT
T ss_pred CHHHHHHHHHh--cCCCEEEEeccccccccCCCCCCcHHHHHHHHHHHHHh---hCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 34566676666 567888777653 2 34343 788999875 37898877321 4678889999999
Q ss_pred CceEEeC
Q 044790 75 AVYFLVK 81 (162)
Q Consensus 75 a~~~l~K 81 (162)
++.+..-
T Consensus 231 ad~I~V~ 237 (365)
T 3sr7_A 231 VKTVDIS 237 (365)
T ss_dssp CCEEECC
T ss_pred CCEEEEe
Confidence 9998764
No 253
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*
Probab=62.20 E-value=51 Score=25.27 Aligned_cols=68 Identities=18% Similarity=0.130 Sum_probs=46.6
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCCCC----------CC-HHHHHHHHHccCCCCCCcEEEEe-cC-CCHHHHHHHHHcC
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLMPC----------LS-GIGLLRKIMNHKTCKNIPVIMMS-SH-DSMSIVFKCLSKG 74 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~mp~----------~~-g~~~~~~ir~~~~~~~~piI~lt-~~-~~~~~~~~a~~~G 74 (162)
+..+..+.++. ..+|.|-+++..|. .+ -++.++++|+. ..+||++-. .. ...+.+..+.+.|
T Consensus 128 ~~~~~~~~~~~--~gad~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~vr~~---~~~Pv~vK~~~~~~~~~~a~~a~~~G 202 (349)
T 1p0k_A 128 TAAQAKEAVEM--IGANALQIHLNVIQEIVMPEGDRSFSGALKRIEQICSR---VSVPVIVKEVGFGMSKASAGKLYEAG 202 (349)
T ss_dssp CHHHHHHHHHH--TTCSEEEEEECTTTTC--------CTTHHHHHHHHHHH---CSSCEEEEEESSCCCHHHHHHHHHHT
T ss_pred CHHHHHHHHHh--cCCCeEEecccchhhhcCCCCCcchHHHHHHHHHHHHH---cCCCEEEEecCCCCCHHHHHHHHHcC
Confidence 44555555665 56898877765442 22 35788888865 368888753 22 4578888999999
Q ss_pred CceEEe
Q 044790 75 AVYFLV 80 (162)
Q Consensus 75 a~~~l~ 80 (162)
++.++.
T Consensus 203 ad~I~v 208 (349)
T 1p0k_A 203 AAAVDI 208 (349)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 999987
No 254
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=61.82 E-value=0.88 Score=30.17 Aligned_cols=83 Identities=11% Similarity=0.097 Sum_probs=48.2
Q ss_pred HHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCC-CCHHH
Q 044790 9 GLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKP-IRKNE 87 (162)
Q Consensus 9 ~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP-~~~~~ 87 (162)
+...++.|.+ ..|.++.+.-.-....|......|...+. .++-+|++-+..-.+.+.+|.+.|+...+.-| +..++
T Consensus 20 g~~v~~~L~~--~g~~V~pVnP~~~~i~G~~~y~sl~dlp~-vDlavi~~p~~~v~~~v~e~~~~g~k~v~~~~G~~~~e 96 (122)
T 3ff4_A 20 AYLAAERLKS--HGHEFIPVGRKKGEVLGKTIINERPVIEG-VDTVTLYINPQNQLSEYNYILSLKPKRVIFNPGTENEE 96 (122)
T ss_dssp HHHHHHHHHH--HTCCEEEESSSCSEETTEECBCSCCCCTT-CCEEEECSCHHHHGGGHHHHHHHCCSEEEECTTCCCHH
T ss_pred HHHHHHHHHH--CCCeEEEECCCCCcCCCeeccCChHHCCC-CCEEEEEeCHHHHHHHHHHHHhcCCCEEEECCCCChHH
Confidence 4456667766 56777777765555555444444444443 34434444444455667788888888776665 44455
Q ss_pred HHHHHHH
Q 044790 88 LQNLWQH 94 (162)
Q Consensus 88 L~~~i~~ 94 (162)
+.+..++
T Consensus 97 ~~~~a~~ 103 (122)
T 3ff4_A 97 LEEILSE 103 (122)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555543
No 255
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=61.53 E-value=11 Score=28.70 Aligned_cols=69 Identities=22% Similarity=0.135 Sum_probs=44.0
Q ss_pred EEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEE
Q 044790 4 IAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFL 79 (162)
Q Consensus 4 ~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l 79 (162)
+.+.+.+++.+.++. ..|+|++|-.-|. .--+.++.++... +.+++. .++.-..+.+....+.|+|.+.
T Consensus 198 VEV~tleea~eA~~a---GaD~I~LDn~~~e-~l~~av~~l~~~~--~~v~ie-ASGGIt~eni~~~a~tGVD~Is 266 (285)
T 1o4u_A 198 VEVENLEDALRAVEA---GADIVMLDNLSPE-EVKDISRRIKDIN--PNVIVE-VSGGITEENVSLYDFETVDVIS 266 (285)
T ss_dssp EEESSHHHHHHHHHT---TCSEEEEESCCHH-HHHHHHHHHHHHC--TTSEEE-EEECCCTTTGGGGCCTTCCEEE
T ss_pred EEeCCHHHHHHHHHc---CCCEEEECCCCHH-HHHHHHHHhhccC--CCceEE-EECCCCHHHHHHHHHcCCCEEE
Confidence 367789999888775 6899999973221 1122344444322 355554 5555667777777888988764
No 256
>2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal phosphate, structural genomi NPPSFA; 2.30A {Methanocaldococcus jannaschii}
Probab=61.47 E-value=26 Score=27.20 Aligned_cols=59 Identities=12% Similarity=0.012 Sum_probs=42.3
Q ss_pred HHHHHHHHHccCCCCCCcEE--EEecCCCHHHHHHHHHcCCceEEe-----CCCCHHHHHHHHHHHHHh
Q 044790 37 GIGLLRKIMNHKTCKNIPVI--MMSSHDSMSIVFKCLSKGAVYFLV-----KPIRKNELQNLWQHVWRK 98 (162)
Q Consensus 37 g~~~~~~ir~~~~~~~~piI--~lt~~~~~~~~~~a~~~Ga~~~l~-----KP~~~~~L~~~i~~~l~~ 98 (162)
++++++++++. ..+||| ....-..++.+.++++.|+++++. +--++......+...+..
T Consensus 228 ~lell~~i~~~---~~IPVV~VAeGGI~Tpeda~~~l~~GaDgV~VGsaI~~a~dP~~aar~l~~ai~~ 293 (330)
T 2yzr_A 228 LYEVLLEVKKL---GRLPVVNFAAGGVATPADAALMMQLGSDGVFVGSGIFKSENPLERARAIVEATYN 293 (330)
T ss_dssp HHHHHHHHHHH---TSCSSEEEECSCCCSHHHHHHHHHTTCSCEEESHHHHTSSCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHh---CCCCeEEEEECCCCCHHHHHHHHHcCcCEEeeHHHHhcCCCHHHHHHHHHHHHHh
Confidence 45888888764 368886 344444689999999999999974 344677777777666654
No 257
>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1
Probab=61.47 E-value=43 Score=25.50 Aligned_cols=66 Identities=23% Similarity=0.241 Sum_probs=45.8
Q ss_pred HHHHHHHhhCCCccEEEEcCCCC---------------CCCH-------HHHHHHHHccCCCCCCcEEEEecCCCHHHHH
Q 044790 11 QAWKILEDLMDQIDLVLTEVLMP---------------CLSG-------IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVF 68 (162)
Q Consensus 11 eal~~l~~~~~~~DlvllD~~mp---------------~~~g-------~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~ 68 (162)
+..+.+.+ ...|.|.+--... +.+| +++++.+++.- ...+|||....-.+.+.+.
T Consensus 229 ~~a~~l~~--~Gvd~i~vsn~~~~~~~~~~~~~~~~~gg~~g~~~~~~~~~~i~~i~~~~-~~~ipVi~~GGI~~~~da~ 305 (336)
T 1f76_A 229 QVADSLVR--HNIDGVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKSTEIIRRLSLEL-NGRLPIIGVGGIDSVIAAR 305 (336)
T ss_dssp HHHHHHHH--TTCSEEEECCCBCCCTTSTTSTTTTCSSEEEEGGGHHHHHHHHHHHHHHH-TTSSCEEEESSCCSHHHHH
T ss_pred HHHHHHHH--cCCcEEEEeCCcccccccccccccccCCCcCCchhHHHHHHHHHHHHHHh-CCCCCEEEECCCCCHHHHH
Confidence 33455666 6789888743211 1223 36777777642 1379999999999999999
Q ss_pred HHHHcCCceEE
Q 044790 69 KCLSKGAVYFL 79 (162)
Q Consensus 69 ~a~~~Ga~~~l 79 (162)
+++..||+...
T Consensus 306 ~~l~~GAd~V~ 316 (336)
T 1f76_A 306 EKIAAGASLVQ 316 (336)
T ss_dssp HHHHHTCSEEE
T ss_pred HHHHCCCCEEE
Confidence 99999998773
No 258
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=61.44 E-value=12 Score=27.19 Aligned_cols=59 Identities=14% Similarity=0.124 Sum_probs=39.0
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHHH
Q 044790 21 DQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVWR 97 (162)
Q Consensus 21 ~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 97 (162)
..+|++|+|+.+|...+ ...++.++...... ....+...++.||+...++...+.++..
T Consensus 47 ~~~~~ii~d~~~~~~~~--------------~~~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 105 (254)
T 2ayx_A 47 TPEDVLITDEVVSKKWQ--------------GRAVVTFCRRHIGI----PLEKAPGEWVHSVAAPHELPALLARIYL 105 (254)
T ss_dssp CTTCEEEEESSCSCCCC--------------SSEEEEECSSCCCS----CCTTSTTEEEECSSCCSHHHHHHHHHHT
T ss_pred CcCcEEEEcCCCccccc--------------cceEEEEecccCCC----cccccCCceeccccchHHHHHHHHHHhh
Confidence 46899999999987532 12355555432110 0123456899999999988888877654
No 259
>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2
Probab=61.30 E-value=41 Score=23.92 Aligned_cols=71 Identities=15% Similarity=0.137 Sum_probs=42.5
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCC----CCC-CCHHHHHHHHHccCCCCCCcEEE-EecCCCHHHHHHHHHcCCceEEeC
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVL----MPC-LSGIGLLRKIMNHKTCKNIPVIM-MSSHDSMSIVFKCLSKGAVYFLVK 81 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~----mp~-~~g~~~~~~ir~~~~~~~~piI~-lt~~~~~~~~~~a~~~Ga~~~l~K 81 (162)
+..+.++.+.+ ...|+|=+++. .|. ..|+++++.|++.. ..|+.+ +.-......+..+.+.|++....-
T Consensus 24 ~~~~~i~~~~~--~G~d~i~l~~~dg~f~~~~~~~~~~i~~l~~~~---~~~~~v~l~vnd~~~~v~~~~~~Gad~v~vh 98 (230)
T 1rpx_A 24 KLGEQVKAIEQ--AGCDWIHVDVMDGRFVPNITIGPLVVDSLRPIT---DLPLDVHLMIVEPDQRVPDFIKAGADIVSVH 98 (230)
T ss_dssp GHHHHHHHHHH--TTCCCEEEEEEBSSSSSCBCCCHHHHHHHGGGC---CSCEEEEEESSSHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHHH--CCCCEEEEeeccCCcccccccCHHHHHHHHhcc---CCcEEEEEEecCHHHHHHHHHHcCCCEEEEE
Confidence 44566777766 56676655531 121 24689999998752 334333 333333347888899999988644
Q ss_pred CC
Q 044790 82 PI 83 (162)
Q Consensus 82 P~ 83 (162)
..
T Consensus 99 ~~ 100 (230)
T 1rpx_A 99 CE 100 (230)
T ss_dssp CS
T ss_pred ec
Confidence 43
No 260
>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*
Probab=61.17 E-value=15 Score=27.69 Aligned_cols=61 Identities=13% Similarity=0.020 Sum_probs=45.6
Q ss_pred HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe-------CCCCHHHHHHHHHHHHHhcc
Q 044790 38 IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV-------KPIRKNELQNLWQHVWRKCH 100 (162)
Q Consensus 38 ~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~-------KP~~~~~L~~~i~~~l~~~~ 100 (162)
+++++.+++.- +.+|||....-.+.+.+.+++..||+.... .|.-..++..-+...+....
T Consensus 232 ~~~i~~v~~~~--~~ipvi~~GGI~~~~da~~~l~~GAd~V~ig~~~l~~~p~~~~~i~~~l~~~~~~~g 299 (314)
T 2e6f_A 232 LANVNAFYRRC--PDKLVFGCGGVYSGEDAFLHILAGASMVQVGTALQEEGPGIFTRLEDELLEIMARKG 299 (314)
T ss_dssp HHHHHHHHHHC--TTSEEEEESSCCSHHHHHHHHHHTCSSEEECHHHHHHCTTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhc--CCCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhHhcCcHHHHHHHHHHHHHHHHcC
Confidence 67888887753 589999999988999999999999986622 56555666666666665543
No 261
>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A*
Probab=60.89 E-value=57 Score=25.44 Aligned_cols=74 Identities=16% Similarity=0.169 Sum_probs=52.5
Q ss_pred EcCHHHHHHHHHhhCCCccEEEEcC----CC-CCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEE-
Q 044790 6 VENGLQAWKILEDLMDQIDLVLTEV----LM-PCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFL- 79 (162)
Q Consensus 6 a~~~~eal~~l~~~~~~~DlvllD~----~m-p~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l- 79 (162)
+.+.++|....+ ..+|.|.+.- .+ .+..-++++..+++.- ...+|||.-..-.....+.+++..||+...
T Consensus 237 v~~~e~a~~a~~---~Gad~I~vs~~ggr~~~~g~~~~~~l~~v~~~v-~~~ipVia~GGI~~g~D~~kalalGAd~V~i 312 (368)
T 2nli_A 237 IQHPEDADMAIK---RGASGIWVSNHGARQLYEAPGSFDTLPAIAERV-NKRVPIVFDSGVRRGEHVAKALASGADVVAL 312 (368)
T ss_dssp ECSHHHHHHHHH---TTCSEEEECCGGGTSCSSCCCHHHHHHHHHHHH-TTSSCEEECSSCCSHHHHHHHHHTTCSEEEE
T ss_pred CCCHHHHHHHHH---cCCCEEEEcCCCcCCCCCCCChHHHHHHHHHHh-CCCCeEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 456677655544 5789888843 11 1345578888887532 136999999999999999999999999884
Q ss_pred eCCC
Q 044790 80 VKPI 83 (162)
Q Consensus 80 ~KP~ 83 (162)
-.|+
T Consensus 313 Gr~~ 316 (368)
T 2nli_A 313 GRPV 316 (368)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 4454
No 262
>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus}
Probab=60.66 E-value=9.6 Score=28.09 Aligned_cols=82 Identities=11% Similarity=0.105 Sum_probs=51.9
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCC----CC-CCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCC
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLM----PC-LSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKP 82 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~m----p~-~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP 82 (162)
+..+.++.+.+ ...|.+=+|+.- |. .-|.++++.||+.. +. -+-++.. ....++..++++||+.+..-.
T Consensus 27 ~l~~~i~~~~~--~gad~lhvDvmDG~fvpn~t~G~~~v~~lr~~~--~~-DvhLMv~-~p~~~i~~~~~aGAd~itvH~ 100 (237)
T 3cu2_A 27 QLNEEVTTLLE--NQINVLHFDIADGQFSSLFTVGAIGIKYFPTHC--FK-DVHLMVR-NQLEVAKAVVANGANLVTLQL 100 (237)
T ss_dssp GHHHHHHHHHH--TTCCEEEEEEEBSSSSSCBCBCTHHHHTSCTTS--EE-EEEEECS-CHHHHHHHHHHTTCSEEEEET
T ss_pred cHHHHHHHHHH--cCCCEEEEEEecCccccchhhhHHHHHHHhhhC--CC-CeEEEEE-CHHHHHHHHHHcCCCEEEEec
Confidence 45666777777 567766666521 22 24568888887643 22 5555544 346678889999999976666
Q ss_pred CCHHHHHHHHHHH
Q 044790 83 IRKNELQNLWQHV 95 (162)
Q Consensus 83 ~~~~~L~~~i~~~ 95 (162)
.....+...++.+
T Consensus 101 ea~~~~~~~i~~i 113 (237)
T 3cu2_A 101 EQYHDFALTIEWL 113 (237)
T ss_dssp TCTTSHHHHHHHH
T ss_pred CCcccHHHHHHHH
Confidence 5555555555554
No 263
>3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A*
Probab=60.40 E-value=53 Score=24.89 Aligned_cols=68 Identities=15% Similarity=0.132 Sum_probs=42.5
Q ss_pred HHHHHHHHHhhCCCccEEEEcCCC--------CCCCHHHHHHHHHccCCCCCCcEEEEecCC------------C-----
Q 044790 9 GLQAWKILEDLMDQIDLVLTEVLM--------PCLSGIGLLRKIMNHKTCKNIPVIMMSSHD------------S----- 63 (162)
Q Consensus 9 ~~eal~~l~~~~~~~DlvllD~~m--------p~~~g~~~~~~ir~~~~~~~~piI~lt~~~------------~----- 63 (162)
-..|++.+.+. ...+++||.... -++..+.. +|+.. +.+||++-+.+. .
T Consensus 150 i~~ave~i~~~-Gn~~i~L~erg~~y~~~~~~vdl~~i~~---lk~~~--~~~pV~~D~sHs~q~p~~~~~~s~G~r~~v 223 (285)
T 3sz8_A 150 LKHVVSKCGEV-GNDRVMLCERGSSFGYDNLVVDMLGFRQ---MAETT--GGCPVIFDVTHSLQCRDPLGDASGGRRRQV 223 (285)
T ss_dssp THHHHHHHHHT-TCCCEEEEECCEECSSSCEECCTTHHHH---HHHHT--TSCCEEEETTTTCC---------------H
T ss_pred HHHHHHHHHHc-CCCcEEEEeCCCCCCCCcCccCHHHHHH---HHHhC--CCCCEEEeCCCccccCCCcCCCCCCchhhH
Confidence 35677887662 457899987532 24555544 44432 358999866665 2
Q ss_pred HHHHHHHHHcCCce-EEeCC
Q 044790 64 MSIVFKCLSKGAVY-FLVKP 82 (162)
Q Consensus 64 ~~~~~~a~~~Ga~~-~l~KP 82 (162)
......|..+||++ ||-|-
T Consensus 224 ~~~a~AAvA~GA~gl~IE~H 243 (285)
T 3sz8_A 224 LDLARAGIAVGIAGLFLEAH 243 (285)
T ss_dssp HHHHHHHHHHCCSEEEEEEE
T ss_pred HHHHHHHHHhCCCEEEEEec
Confidence 44567788899997 45553
No 264
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*
Probab=60.39 E-value=37 Score=25.94 Aligned_cols=62 Identities=15% Similarity=0.134 Sum_probs=45.3
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeC
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVK 81 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~K 81 (162)
+..+.++.+.+ ..+|+|.+....| .++++.++.. .+||++-. ...+.+..+.+.|+|.++.-
T Consensus 76 ~~~~~~~~a~~--~g~d~V~~~~g~p----~~~i~~l~~~----g~~v~~~v--~~~~~a~~~~~~GaD~i~v~ 137 (332)
T 2z6i_A 76 FVEDIVDLVIE--EGVKVVTTGAGNP----SKYMERFHEA----GIIVIPVV--PSVALAKRMEKIGADAVIAE 137 (332)
T ss_dssp THHHHHHHHHH--TTCSEEEECSSCG----GGTHHHHHHT----TCEEEEEE--SSHHHHHHHHHTTCSCEEEE
T ss_pred CHHHHHHHHHH--CCCCEEEECCCCh----HHHHHHHHHc----CCeEEEEe--CCHHHHHHHHHcCCCEEEEE
Confidence 34577777777 7899999877665 4678888762 57777544 35667788889999988774
No 265
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=60.15 E-value=35 Score=26.77 Aligned_cols=77 Identities=6% Similarity=0.022 Sum_probs=51.8
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHH
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNE 87 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~ 87 (162)
+.++..+++.. .|+.++=..-.+ -|+-+++.+. ..+|||. +.....+ ....|..+++..|-++++
T Consensus 304 ~~~~l~~~~~~----adv~v~pS~~E~-~g~~~lEAmA-----~G~PVV~-~~~g~~e----~v~~~~~G~lv~~~d~~~ 368 (413)
T 2x0d_A 304 TLEDYADLLKR----SSIGISLMISPH-PSYPPLEMAH-----FGLRVIT-NKYENKD----LSNWHSNIVSLEQLNPEN 368 (413)
T ss_dssp CHHHHHHHHHH----CCEEECCCSSSS-CCSHHHHHHH-----TTCEEEE-ECBTTBC----GGGTBTTEEEESSCSHHH
T ss_pred CHHHHHHHHHh----CCEEEEecCCCC-CCcHHHHHHh-----CCCcEEE-eCCCcch----hhhcCCCEEEeCCCCHHH
Confidence 35666666655 577776332222 2455666664 5789997 5433332 345688899999999999
Q ss_pred HHHHHHHHHHhc
Q 044790 88 LQNLWQHVWRKC 99 (162)
Q Consensus 88 L~~~i~~~l~~~ 99 (162)
|..+|..++...
T Consensus 369 la~ai~~ll~~~ 380 (413)
T 2x0d_A 369 IAETLVELCMSF 380 (413)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHcCH
Confidence 999999998754
No 266
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=60.15 E-value=20 Score=26.28 Aligned_cols=42 Identities=17% Similarity=0.075 Sum_probs=34.1
Q ss_pred HHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeC
Q 044790 37 GIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVK 81 (162)
Q Consensus 37 g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~K 81 (162)
..++++++++. ..+||++-.+-...+.+..++..||+.++.=
T Consensus 189 ~~~~i~~v~~~---~~~pI~vgGGI~~~e~~~~~~~~GAdgvvVG 230 (262)
T 1rd5_A 189 VESLIQEVKKV---TNKPVAVGFGISKPEHVKQIAQWGADGVIIG 230 (262)
T ss_dssp HHHHHHHHHHH---CSSCEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHhh---cCCeEEEECCcCCHHHHHHHHHcCCCEEEEC
Confidence 45678888765 3789998888777999999999999998754
No 267
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=60.13 E-value=24 Score=26.54 Aligned_cols=75 Identities=16% Similarity=0.100 Sum_probs=50.7
Q ss_pred HHHHHHHHHhhCCCccEEEEcCCC------CCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCC
Q 044790 9 GLQAWKILEDLMDQIDLVLTEVLM------PCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKP 82 (162)
Q Consensus 9 ~~eal~~l~~~~~~~DlvllD~~m------p~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP 82 (162)
.++..+++.. .|++|+=... +..-|..+++.+. ..+|||.... .. ..+.+..| .+++..|
T Consensus 263 ~~~~~~~~~~----ad~~v~ps~~~~~~~~~e~~~~~~~Ea~a-----~G~PvI~~~~-~~---~~e~i~~~-~g~~~~~ 328 (394)
T 3okp_A 263 YQDMINTLAA----ADIFAMPARTRGGGLDVEGLGIVYLEAQA-----CGVPVIAGTS-GG---APETVTPA-TGLVVEG 328 (394)
T ss_dssp HHHHHHHHHH----CSEEEECCCCBGGGTBCCSSCHHHHHHHH-----TTCCEEECSS-TT---GGGGCCTT-TEEECCT
T ss_pred HHHHHHHHHh----CCEEEecCccccccccccccCcHHHHHHH-----cCCCEEEeCC-CC---hHHHHhcC-CceEeCC
Confidence 3566666655 5888775443 1444567777774 4688886332 22 22334567 8999999
Q ss_pred CCHHHHHHHHHHHHH
Q 044790 83 IRKNELQNLWQHVWR 97 (162)
Q Consensus 83 ~~~~~L~~~i~~~l~ 97 (162)
.+.++|...|..++.
T Consensus 329 ~d~~~l~~~i~~l~~ 343 (394)
T 3okp_A 329 SDVDKLSELLIELLD 343 (394)
T ss_dssp TCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999998875
No 268
>3p3b_A Mandelate racemase/muconate lactonizing protein; enolase superfamily fold, galacturonate dehydratase, D-tartr galacturonate, lyase; HET: TAR; 1.65A {Geobacillus SP} PDB: 3ops_A* 3n4f_A* 3qpe_A*
Probab=60.00 E-value=29 Score=27.25 Aligned_cols=78 Identities=12% Similarity=0.074 Sum_probs=51.2
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccC--CCCCCcEEEEecCCCHHHHHHHHHcCC-ceEEeCCCC
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHK--TCKNIPVIMMSSHDSMSIVFKCLSKGA-VYFLVKPIR 84 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~--~~~~~piI~lt~~~~~~~~~~a~~~Ga-~~~l~KP~~ 84 (162)
+..+|+++++.. .++++..+.--+| +-++.+++|++.- ....+||+.-= ........++++.|+ +-+..|+..
T Consensus 213 ~~~~ai~~~~~l-~~~~i~~iE~P~~--~d~~~~~~l~~~l~~~g~~iPIa~dE-~~~~~~~~~~i~~~~~d~v~ik~~~ 288 (392)
T 3p3b_A 213 NLNLTKEVLAAL-SDVNLYWLEEAFH--EDEALYEDLKEWLGQRGQNVLIADGE-GLASPHLIEWATRGRVDVLQYDIIW 288 (392)
T ss_dssp CHHHHHHHHHHT-TTSCEEEEECSSS--CCHHHHHHHHHHHHHHTCCCEEEECC-SSCCTTHHHHHHTTSCCEECCBTTT
T ss_pred CHHHHHHHHHHH-HhcCCCEEecCCc--ccHHHHHHHHHhhccCCCCccEEecC-CCCHHHHHHHHHcCCCCEEEeCccc
Confidence 567888888774 5688888877666 4467777777640 00257777544 555667788888884 555678866
Q ss_pred HHHHHH
Q 044790 85 KNELQN 90 (162)
Q Consensus 85 ~~~L~~ 90 (162)
. =|.+
T Consensus 289 ~-Git~ 293 (392)
T 3p3b_A 289 P-GFTH 293 (392)
T ss_dssp B-CHHH
T ss_pred c-CHHH
Confidence 4 4443
No 269
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=60.00 E-value=41 Score=25.78 Aligned_cols=85 Identities=6% Similarity=0.096 Sum_probs=42.2
Q ss_pred HHHHHhhCCCccEEEEcCC--C-CCCC------H----HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCc-eE
Q 044790 13 WKILEDLMDQIDLVLTEVL--M-PCLS------G----IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAV-YF 78 (162)
Q Consensus 13 l~~l~~~~~~~DlvllD~~--m-p~~~------g----~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~-~~ 78 (162)
+..... ..+.+||+|=. | +... . -+++..+..........++++.+....+.+..++..-+. .+
T Consensus 169 ~~~a~~--~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i 246 (357)
T 3d8b_A 169 FAVARC--QQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRL 246 (357)
T ss_dssp HHHHHH--TCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEE
T ss_pred HHHHHh--cCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEE
Confidence 344444 56889999832 1 1100 0 134444443221123345555444445555555555555 34
Q ss_pred EeCCCCHHHHHHHHHHHHHhc
Q 044790 79 LVKPIRKNELQNLWQHVWRKC 99 (162)
Q Consensus 79 l~KP~~~~~L~~~i~~~l~~~ 99 (162)
...+.+.++....|..++...
T Consensus 247 ~i~~p~~~~r~~il~~~~~~~ 267 (357)
T 3d8b_A 247 YIPLPEASARKQIVINLMSKE 267 (357)
T ss_dssp ECCCCCHHHHHHHHHHHHHTS
T ss_pred EeCCcCHHHHHHHHHHHHhhc
Confidence 445567777777777766543
No 270
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=60.00 E-value=44 Score=24.47 Aligned_cols=83 Identities=16% Similarity=0.111 Sum_probs=56.7
Q ss_pred EcCHHHHHHHHHhhCCCccEEEEcCCCC-CC-CHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeC--
Q 044790 6 VENGLQAWKILEDLMDQIDLVLTEVLMP-CL-SGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVK-- 81 (162)
Q Consensus 6 a~~~~eal~~l~~~~~~~DlvllD~~mp-~~-~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~K-- 81 (162)
+.+..|+...++. .+|+|=+ .| .. -|.++++.++..- +++|++.... -..+.+.+++++|+...+.=
T Consensus 134 v~TptEi~~A~~~---Gad~vK~---FPa~~~gG~~~lkal~~p~--p~ip~~ptGG-I~~~n~~~~l~aGa~~~vgGs~ 204 (232)
T 4e38_A 134 VNNPSTVEAALEM---GLTTLKF---FPAEASGGISMVKSLVGPY--GDIRLMPTGG-ITPSNIDNYLAIPQVLACGGTW 204 (232)
T ss_dssp ECSHHHHHHHHHT---TCCEEEE---CSTTTTTHHHHHHHHHTTC--TTCEEEEBSS-CCTTTHHHHHTSTTBCCEEECG
T ss_pred CCCHHHHHHHHHc---CCCEEEE---CcCccccCHHHHHHHHHHh--cCCCeeeEcC-CCHHHHHHHHHCCCeEEEECch
Confidence 5688888888765 6888876 44 33 3899999998743 7888886554 45788999999998755322
Q ss_pred ---C-----CCHHHHHHHHHHHHH
Q 044790 82 ---P-----IRKNELQNLWQHVWR 97 (162)
Q Consensus 82 ---P-----~~~~~L~~~i~~~l~ 97 (162)
| -+.+++.+..++++.
T Consensus 205 l~~~~~i~~~~~~~i~~~a~~~~~ 228 (232)
T 4e38_A 205 MVDKKLVTNGEWDEIARLTREIVE 228 (232)
T ss_dssp GGCHHHHHTTCHHHHHHHHHHHHH
T ss_pred hcChHHhhcCCHHHHHHHHHHHHH
Confidence 1 244555555555443
No 271
>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}
Probab=59.95 E-value=29 Score=26.43 Aligned_cols=71 Identities=21% Similarity=0.255 Sum_probs=49.1
Q ss_pred EcCHHHHHHHHHhhCCCccEEEEcCCCC-CCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHH-cCCceEEe
Q 044790 6 VENGLQAWKILEDLMDQIDLVLTEVLMP-CLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLS-KGAVYFLV 80 (162)
Q Consensus 6 a~~~~eal~~l~~~~~~~DlvllD~~mp-~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~-~Ga~~~l~ 80 (162)
+.+..+|++.+.. ..+|-||..=.-| ..+|++.++.+..... ..++|+ ..+--..+.+...++ .|++.|-.
T Consensus 165 ~~d~~~Ale~Li~--lGvdrILTSG~~~~a~~Gl~~Lk~Lv~~a~-~rI~Im-aGGGV~~~Ni~~l~~~tG~~~~H~ 237 (287)
T 3iwp_A 165 VHDPMAALETLLT--LGFERVLTSGCDSSALEGLPLIKRLIEQAK-GRIVVM-PGGGITDRNLQRILEGSGATEFHC 237 (287)
T ss_dssp CSCHHHHHHHHHH--HTCSEEEECTTSSSTTTTHHHHHHHHHHHT-TSSEEE-ECTTCCTTTHHHHHHHHCCSEEEE
T ss_pred cCCHHHHHHHHHH--cCCCEEECCCCCCChHHhHHHHHHHHHHhC-CCCEEE-ECCCcCHHHHHHHHHhhCCCEEeE
Confidence 3478899999988 6899999965443 4789999988866431 234444 444445555666555 89988864
No 272
>2r8e_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; YRBI, divalent metal, HAD superfamily, KDO 8-P, hydrolase; 1.40A {Escherichia coli O6} PDB: 2r8x_A 2r8y_A 2r8z_A 3hyc_A 3i6b_A*
Probab=59.57 E-value=39 Score=23.06 Aligned_cols=50 Identities=12% Similarity=0.106 Sum_probs=34.6
Q ss_pred HHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHH
Q 044790 40 LLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQ 93 (162)
Q Consensus 40 ~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~ 93 (162)
+++.+++ ..++++++|..........+-..|...|+....+..+.+..+.
T Consensus 61 ~l~~L~~----~g~~v~ivT~~~~~~~~~~l~~lgl~~~~~~~kpk~~~~~~~~ 110 (188)
T 2r8e_A 61 GIRCALT----SDIEVAIITGRKAKLVEDRCATLGITHLYQGQSNKLIAFSDLL 110 (188)
T ss_dssp HHHHHHT----TTCEEEEECSSCCHHHHHHHHHHTCCEEECSCSCSHHHHHHHH
T ss_pred HHHHHHH----CCCeEEEEeCCChHHHHHHHHHcCCceeecCCCCCHHHHHHHH
Confidence 5777765 4689999999877766666667899988865544444444443
No 273
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=59.46 E-value=28 Score=27.04 Aligned_cols=86 Identities=8% Similarity=0.079 Sum_probs=43.6
Q ss_pred HHHHHHHhhCCCccEEEEcCC--C-CCC------CHH----HHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCc-
Q 044790 11 QAWKILEDLMDQIDLVLTEVL--M-PCL------SGI----GLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAV- 76 (162)
Q Consensus 11 eal~~l~~~~~~~DlvllD~~--m-p~~------~g~----~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~- 76 (162)
..++.... ..+.+||+|=. | +.. ... +++..+..........|+++.+....+.+..++..-+.
T Consensus 198 ~~~~~a~~--~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~ 275 (389)
T 3vfd_A 198 ALFAVARE--LQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIK 275 (389)
T ss_dssp HHHHHHHH--SSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHTTCCE
T ss_pred HHHHHHHh--cCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHcCcce
Confidence 34444455 56789998742 1 110 011 33444433221123345555444555555556655554
Q ss_pred eEEeCCCCHHHHHHHHHHHHHh
Q 044790 77 YFLVKPIRKNELQNLWQHVWRK 98 (162)
Q Consensus 77 ~~l~KP~~~~~L~~~i~~~l~~ 98 (162)
.+...+.+.++....|+.++..
T Consensus 276 ~i~i~~p~~~~r~~il~~~~~~ 297 (389)
T 3vfd_A 276 RVYVSLPNEETRLLLLKNLLCK 297 (389)
T ss_dssp EEECCCCCHHHHHHHHHHHHTT
T ss_pred EEEcCCcCHHHHHHHHHHHHHh
Confidence 3555667788888888776654
No 274
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=59.31 E-value=56 Score=24.83 Aligned_cols=74 Identities=15% Similarity=0.073 Sum_probs=49.3
Q ss_pred HHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHH
Q 044790 9 GLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNEL 88 (162)
Q Consensus 9 ~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L 88 (162)
.++..+.+. ..|++|+=... +.-|..+++.+. ..+|||... . ....+.+..| .+++..|.+.++|
T Consensus 321 ~~~~~~~~~----~adv~v~ps~~-e~~~~~~~EAma-----~G~Pvi~s~-~---~~~~e~~~~~-~g~~~~~~d~~~l 385 (439)
T 3fro_A 321 REFVRELYG----SVDFVIIPSYF-EPFGLVALEAMC-----LGAIPIASA-V---GGLRDIITNE-TGILVKAGDPGEL 385 (439)
T ss_dssp HHHHHHHHT----TCSEEEECBSC-CSSCHHHHHHHH-----TTCEEEEES-S---THHHHHCCTT-TCEEECTTCHHHH
T ss_pred HHHHHHHHH----HCCEEEeCCCC-CCccHHHHHHHH-----CCCCeEEcC-C---CCcceeEEcC-ceEEeCCCCHHHH
Confidence 344444443 35777765444 334566777764 467888643 2 2334445567 9999999999999
Q ss_pred HHHHHHHHH
Q 044790 89 QNLWQHVWR 97 (162)
Q Consensus 89 ~~~i~~~l~ 97 (162)
...|..++.
T Consensus 386 a~~i~~ll~ 394 (439)
T 3fro_A 386 ANAILKALE 394 (439)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999987
No 275
>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A*
Probab=59.28 E-value=54 Score=24.97 Aligned_cols=48 Identities=13% Similarity=0.187 Sum_probs=37.7
Q ss_pred CCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceE-EeCCCC
Q 044790 35 LSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYF-LVKPIR 84 (162)
Q Consensus 35 ~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~-l~KP~~ 84 (162)
...++++..+++.- ..+|||....-.....+.+++..||+.. +-.|+-
T Consensus 241 ~~~~~~l~~v~~~~--~~ipvia~GGI~~~~d~~kal~~GAd~V~igr~~l 289 (332)
T 1vcf_A 241 IPTARAILEVREVL--PHLPLVASGGVYTGTDGAKALALGADLLAVARPLL 289 (332)
T ss_dssp CBHHHHHHHHHHHC--SSSCEEEESSCCSHHHHHHHHHHTCSEEEECGGGH
T ss_pred ccHHHHHHHHHHhc--CCCeEEEECCCCCHHHHHHHHHhCCChHhhhHHHH
Confidence 35577777787643 3799999999999999999999999987 455543
No 276
>2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.00A {Roseovarius nubinhibens}
Probab=59.22 E-value=41 Score=26.09 Aligned_cols=74 Identities=9% Similarity=0.068 Sum_probs=50.3
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcC-CceEEeCCCCHH
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKG-AVYFLVKPIRKN 86 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~G-a~~~l~KP~~~~ 86 (162)
+.++++++++.. ..+++ .+.--++ -++.+++|++. ..+||+.--.........++++.| ++-+..||...-
T Consensus 201 ~~~~a~~~~~~l-~~~~i-~iE~P~~---~~~~~~~l~~~---~~iPI~~de~i~~~~~~~~~i~~~~~d~v~ik~~~~G 272 (379)
T 2rdx_A 201 RVDNAIRLARAT-RDLDY-ILEQPCR---SYEECQQVRRV---ADQPMKLDECVTGLHMAQRIVADRGAEICCLKISNLG 272 (379)
T ss_dssp CHHHHHHHHHHT-TTSCC-EEECCSS---SHHHHHHHHTT---CCSCEEECTTCCSHHHHHHHHHHTCCSEEEEETTTTT
T ss_pred CHHHHHHHHHHH-HhCCe-EEeCCcC---CHHHHHHHHhh---CCCCEEEeCCcCCHHHHHHHHHcCCCCEEEEeccccC
Confidence 457788877764 45677 6664444 57778888764 368887655555778888888876 666788887643
Q ss_pred HHH
Q 044790 87 ELQ 89 (162)
Q Consensus 87 ~L~ 89 (162)
-+.
T Consensus 273 Git 275 (379)
T 2rdx_A 273 GLS 275 (379)
T ss_dssp SHH
T ss_pred CHH
Confidence 333
No 277
>3md9_A Hemin-binding periplasmic protein HMUT; transport protein, alpha beta protein, rigid helical backbon substrate-free, heme transport; 1.50A {Yersinia pestis} PDB: 3nu1_A*
Probab=58.49 E-value=47 Score=23.80 Aligned_cols=78 Identities=12% Similarity=0.075 Sum_probs=46.3
Q ss_pred HHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHH
Q 044790 13 WKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLW 92 (162)
Q Consensus 13 l~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i 92 (162)
+|.+.. .+|||||...... .-+..++|++ ..+|++++......+...+.+.. .-..+-|+-..+++...+
T Consensus 52 ~E~i~~--l~PDlIi~~~~~~---~~~~~~~L~~----~gipvv~~~~~~~~~~~~~~i~~-lg~~~g~~~~A~~l~~~~ 121 (255)
T 3md9_A 52 AEGILA--MKPTMLLVSELAQ---PSLVLTQIAS----SGVNVVTVPGQTTPESVAMKINA-VATALHQTEKGQKLIEDY 121 (255)
T ss_dssp HHHHHT--TCCSEEEEETTCS---CHHHHHHHHH----TTCEEEEECCCCSHHHHHHHHHH-HHHHHTCHHHHHHHHHHH
T ss_pred HHHHHc--cCCCEEEEcCCcC---chhHHHHHHH----cCCcEEEeCCCCCHHHHHHHHHH-HHHHhCCHHHHHHHHHHH
Confidence 455666 7899999875431 1356677765 35899988744444444443331 112333555567777777
Q ss_pred HHHHHhcc
Q 044790 93 QHVWRKCH 100 (162)
Q Consensus 93 ~~~l~~~~ 100 (162)
+..+....
T Consensus 122 ~~~~~~i~ 129 (255)
T 3md9_A 122 QQRLAAVN 129 (255)
T ss_dssp HHHHHTSC
T ss_pred HHHHHHHH
Confidence 77766543
No 278
>3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A
Probab=58.44 E-value=23 Score=25.98 Aligned_cols=59 Identities=14% Similarity=0.157 Sum_probs=40.8
Q ss_pred HHHHHHHhhCCCccEEEEcCCCC--CCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeC
Q 044790 11 QAWKILEDLMDQIDLVLTEVLMP--CLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVK 81 (162)
Q Consensus 11 eal~~l~~~~~~~DlvllD~~mp--~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~K 81 (162)
++++.+.+ ...|+|++.-... .-+-.+++++||+ ..+|+|++..... .+..|+|+|+..
T Consensus 22 ~~~~~~~~--~GtD~i~vGGs~gvt~~~~~~~v~~ik~----~~~Pvvlfp~~~~------~v~~gaD~~l~p 82 (228)
T 3vzx_A 22 EQLEILCE--SGTDAVIIGGSDGVTEDNVLRMMSKVRR----FLVPCVLEVSAIE------AIVPGFDLYFIP 82 (228)
T ss_dssp THHHHHHT--SSCSEEEECCCSCCCHHHHHHHHHHHTT----SSSCEEEECSCGG------GCCSCCSEEEEE
T ss_pred HHHHHHHH--cCCCEEEECCcCCCCHHHHHHHHHHhhc----cCCCEEEeCCCHH------HccccCCEEEEe
Confidence 46676766 6799999987542 2233555666654 4899999998632 245799999876
No 279
>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...
Probab=58.11 E-value=56 Score=24.43 Aligned_cols=73 Identities=11% Similarity=0.019 Sum_probs=49.7
Q ss_pred EEEEcCHHHHHHHHHhhCCCccEEEEcC-CC--CCCCHHHHHHHHHc-cCCCCCCcEEEEecCCCHHHHHHHHHcCCceE
Q 044790 3 VIAVENGLQAWKILEDLMDQIDLVLTEV-LM--PCLSGIGLLRKIMN-HKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYF 78 (162)
Q Consensus 3 v~~a~~~~eal~~l~~~~~~~DlvllD~-~m--p~~~g~~~~~~ir~-~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~ 78 (162)
++.+++..|.-..+.. ..++|=++- ++ -..| ++....|.. .+ .++.+|.-++-...+.+.+....|+++|
T Consensus 157 LvEVh~~~El~rAl~~---~a~iIGINNRnL~tf~vd-l~~t~~L~~~ip--~~~~~VsESGI~t~~dv~~l~~~G~~a~ 230 (258)
T 4a29_A 157 LILINDENDLDIALRI---GARFIGIMSRDFETGEIN-KENQRKLISMIP--SNVVKVAKLGISERNEIEELRKLGVNAF 230 (258)
T ss_dssp EEEESSHHHHHHHHHT---TCSEEEECSBCTTTCCBC-HHHHHHHHTTSC--TTSEEEEEESSCCHHHHHHHHHTTCCEE
T ss_pred HHhcchHHHHHHHhcC---CCcEEEEeCCCccccccC-HHHHHHHHhhCC--CCCEEEEcCCCCCHHHHHHHHHCCCCEE
Confidence 4678888887666654 567775532 22 2233 344445543 33 4666777788889999999999999999
Q ss_pred EeC
Q 044790 79 LVK 81 (162)
Q Consensus 79 l~K 81 (162)
|.-
T Consensus 231 LVG 233 (258)
T 4a29_A 231 LIS 233 (258)
T ss_dssp EEC
T ss_pred EEC
Confidence 975
No 280
>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans}
Probab=57.93 E-value=66 Score=25.19 Aligned_cols=69 Identities=9% Similarity=-0.079 Sum_probs=46.9
Q ss_pred cCHHHHHHHHHhhCCCccEEEEcCC--------------------CCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHH
Q 044790 7 ENGLQAWKILEDLMDQIDLVLTEVL--------------------MPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSI 66 (162)
Q Consensus 7 ~~~~eal~~l~~~~~~~DlvllD~~--------------------mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~ 66 (162)
.+.++|....+. .+|.|.++-. -.+....+.+..++... ..+|||.-..-....+
T Consensus 218 ~s~e~A~~l~~a---Gad~I~V~g~GGt~~a~ie~~r~~~~~~~~~~g~pt~~~L~~v~~~~--~~ipvia~GGI~~g~D 292 (365)
T 3sr7_A 218 MDVKTIQTAIDL---GVKTVDISGRGGTSFAYIENRRGGNRSYLNQWGQTTAQVLLNAQPLM--DKVEILASGGIRHPLD 292 (365)
T ss_dssp CCHHHHHHHHHH---TCCEEECCCBC--------------CGGGTTCSCBHHHHHHHHGGGT--TTSEEEECSSCCSHHH
T ss_pred CCHHHHHHHHHc---CCCEEEEeCCCCcccchhhccccccccccccccccHHHHHHHHHHhc--CCCeEEEeCCCCCHHH
Confidence 355666555543 6888887532 01223345566665433 4789998888889999
Q ss_pred HHHHHHcCCceEEe
Q 044790 67 VFKCLSKGAVYFLV 80 (162)
Q Consensus 67 ~~~a~~~Ga~~~l~ 80 (162)
+.+++.+||+....
T Consensus 293 v~KaLalGAdaV~i 306 (365)
T 3sr7_A 293 IIKALVLGAKAVGL 306 (365)
T ss_dssp HHHHHHHTCSEEEE
T ss_pred HHHHHHcCCCEEEE
Confidence 99999999998743
No 281
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=57.91 E-value=51 Score=23.87 Aligned_cols=63 Identities=13% Similarity=0.152 Sum_probs=41.2
Q ss_pred HHHHHHHHHhhCCCccEEEEcCCC--CCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 9 GLQAWKILEDLMDQIDLVLTEVLM--PCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 9 ~~eal~~l~~~~~~~DlvllD~~m--p~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
.+++.+.+. ...|+|++|... ....-.++++.+++. .++++ ......+...++.+.|++-+..
T Consensus 91 ~~~i~~~~~---aGad~I~l~~~~~~~p~~l~~~i~~~~~~----g~~v~--~~v~t~eea~~a~~~Gad~Ig~ 155 (229)
T 3q58_A 91 LQDVDALAQ---AGADIIAFDASFRSRPVDIDSLLTRIRLH----GLLAM--ADCSTVNEGISCHQKGIEFIGT 155 (229)
T ss_dssp HHHHHHHHH---HTCSEEEEECCSSCCSSCHHHHHHHHHHT----TCEEE--EECSSHHHHHHHHHTTCSEEEC
T ss_pred HHHHHHHHH---cCCCEEEECccccCChHHHHHHHHHHHHC----CCEEE--EecCCHHHHHHHHhCCCCEEEe
Confidence 345544443 478999999863 123456778888763 34433 3445778889999999987753
No 282
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=57.69 E-value=43 Score=22.99 Aligned_cols=74 Identities=15% Similarity=0.159 Sum_probs=37.1
Q ss_pred CCccEEEEcC--CCCCCCHHHHHHHHHccCCCCCCcEEEEec-CCCHHHHHHHHHc-CCceEEeCCCCHHHHHHHHHHH
Q 044790 21 DQIDLVLTEV--LMPCLSGIGLLRKIMNHKTCKNIPVIMMSS-HDSMSIVFKCLSK-GAVYFLVKPIRKNELQNLWQHV 95 (162)
Q Consensus 21 ~~~DlvllD~--~mp~~~g~~~~~~ir~~~~~~~~piI~lt~-~~~~~~~~~a~~~-Ga~~~l~KP~~~~~L~~~i~~~ 95 (162)
..|+++|+|= -+...|- .+.+.|...-......+|+++. ..+...+...... ++.=|-..+.+.+++...|...
T Consensus 98 ~~p~llilDEigp~~~ld~-~~~~~l~~~l~~~~~~~i~~~H~~h~~~~~~~i~~r~~~~i~~~~~~~r~~~~~~l~~~ 175 (178)
T 1ye8_A 98 DRRKVIIIDEIGKMELFSK-KFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPENRDVILEDILSL 175 (178)
T ss_dssp CTTCEEEECCCSTTGGGCH-HHHHHHHHHHTCTTSEEEEECCSSCCSHHHHHHHTCTTCEEEECCTTTTTTHHHHHHHH
T ss_pred cCCCEEEEeCCCCcccCCH-HHHHHHHHHHhcCCCeEEEEEccCCCchHHHHHHhcCCcEEEEecCcCHHHHHHHHHHH
Confidence 5799999997 5555553 2223332211113344666663 2334444333332 2333444566666666666543
No 283
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=57.66 E-value=42 Score=22.91 Aligned_cols=78 Identities=21% Similarity=0.315 Sum_probs=44.9
Q ss_pred HHHHHhhCCCccEEEEcCCCCC-CCHHHHHHHHHccCCCCCCcEEEEecCCC---HHHHHHHHHcCCceEEeCCCCHHHH
Q 044790 13 WKILEDLMDQIDLVLTEVLMPC-LSGIGLLRKIMNHKTCKNIPVIMMSSHDS---MSIVFKCLSKGAVYFLVKPIRKNEL 88 (162)
Q Consensus 13 l~~l~~~~~~~DlvllD~~mp~-~~g~~~~~~ir~~~~~~~~piI~lt~~~~---~~~~~~a~~~Ga~~~l~KP~~~~~L 88 (162)
++++++ .|+||.++.-++ ..++|+--... ...|||++..... ...+..+...+ ..|-...++.++|
T Consensus 72 ~~~i~~----aD~vva~~~~~d~Gt~~EiGyA~a-----lgKPVi~l~~~~~~~~~n~M~~g~~~~-~~~~~~~y~~~el 141 (165)
T 2khz_A 72 LNWLQQ----ADVVVAEVTQPSLGVGYELGRAVA-----LGKPILCLFRPQSGRVLSAMIRGAADG-SRFQVWDYAEGEV 141 (165)
T ss_dssp HHHHHH----CSEEEEECSSCCHHHHHHHHHHHH-----TCSSEEEEECTTTTCCCCHHHHHTCCS-SSEEEEECCTTTH
T ss_pred HHHHHh----CCEEEEECCCCCCCHHHHHHHHHH-----CCCEEEEEEcCCCCCcchhhhcccCcc-ceeEEEecCHHHH
Confidence 455554 699998776222 12244433332 4789999876442 11222222111 3355555588999
Q ss_pred HHHHHHHHHhcc
Q 044790 89 QNLWQHVWRKCH 100 (162)
Q Consensus 89 ~~~i~~~l~~~~ 100 (162)
...|..++....
T Consensus 142 ~~~l~~~~~~~~ 153 (165)
T 2khz_A 142 ETMLDRYFEAYL 153 (165)
T ss_dssp HHHHHHHHHTSC
T ss_pred HHHHHHHHHhcC
Confidence 999999988653
No 284
>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A
Probab=57.58 E-value=25 Score=26.82 Aligned_cols=66 Identities=12% Similarity=0.031 Sum_probs=44.3
Q ss_pred EEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHH----HHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEE
Q 044790 4 IAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLR----KIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFL 79 (162)
Q Consensus 4 ~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~----~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l 79 (162)
..+.+.+++.+.++. ..|.|.+|-.- .+.++ .++.. +++++|.+.. .-..+.+....+.|++.+-
T Consensus 202 vev~tlee~~~A~~a---GaD~I~ld~~~-----~~~l~~~v~~l~~~--~~~~~I~ASG-GIt~~ni~~~~~aGaD~i~ 270 (299)
T 2jbm_A 202 VECSSLQEAVQAAEA---GADLVLLDNFK-----PEELHPTATVLKAQ--FPSVAVEASG-GITLDNLPQFCGPHIDVIS 270 (299)
T ss_dssp EEESSHHHHHHHHHT---TCSEEEEESCC-----HHHHHHHHHHHHHH--CTTSEEEEES-SCCTTTHHHHCCTTCCEEE
T ss_pred EecCCHHHHHHHHHc---CCCEEEECCCC-----HHHHHHHHHHhhcc--CCCeeEEEEC-CCCHHHHHHHHHCCCCEEE
Confidence 467788888887764 68999999622 34333 33332 3567766554 4577888888899997664
Q ss_pred e
Q 044790 80 V 80 (162)
Q Consensus 80 ~ 80 (162)
.
T Consensus 271 v 271 (299)
T 2jbm_A 271 M 271 (299)
T ss_dssp C
T ss_pred E
Confidence 3
No 285
>3tjx_A Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh, oxidored mutation H174A; HET: FMN; 1.64A {Leishmania major} PDB: 3gz3_A* 3gye_A* 3tro_A*
Probab=57.32 E-value=41 Score=25.91 Aligned_cols=61 Identities=13% Similarity=-0.002 Sum_probs=44.8
Q ss_pred HHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe------C-CCCHHHHHHHHHHHHHhccC
Q 044790 39 GLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV------K-PIRKNELQNLWQHVWRKCHS 101 (162)
Q Consensus 39 ~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~------K-P~~~~~L~~~i~~~l~~~~~ 101 (162)
++++.+++.. ..+|||.+..-...+++.+.+.+||+..-. + |.-..++.+-|..++.+...
T Consensus 266 ~~v~~~~~~~--~~~pIIg~GGI~s~~Da~e~i~aGAs~Vqv~Ta~~y~GP~~~~~I~~~L~~~L~~~G~ 333 (354)
T 3tjx_A 266 ANINAFYRRC--PGKLIFGCGGVYTGEDAFLHVLAGASMVQVGTALQEEGPSIFERLTSELLGVMAKKRY 333 (354)
T ss_dssp HHHHHHHHHC--TTSEEEEESSCCSHHHHHHHHHHTEEEEEECHHHHHHCTTHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhc--CCCcEEEeCCcCCHHHHHHHHHcCCCEEEEChhhhhcCchHHHHHHHHHHHHHHHcCC
Confidence 3455555543 678999999999999999999999996532 3 66667777777777776543
No 286
>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*
Probab=57.16 E-value=57 Score=24.95 Aligned_cols=55 Identities=16% Similarity=0.103 Sum_probs=37.5
Q ss_pred ccEEEEcCCCCCC-CHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 23 IDLVLTEVLMPCL-SGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 23 ~DlvllD~~mp~~-~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
+++|.+|...... .-++.+++||+.. +..||+ ...-...+.+..+.++|++.++.
T Consensus 121 ~~~i~i~~~~G~~~~~~~~i~~lr~~~--~~~~vi-~G~v~s~e~A~~a~~aGad~Ivv 176 (336)
T 1ypf_A 121 PEYITIDIAHGHSNAVINMIQHIKKHL--PESFVI-AGNVGTPEAVRELENAGADATKV 176 (336)
T ss_dssp CSEEEEECSSCCSHHHHHHHHHHHHHC--TTSEEE-EEEECSHHHHHHHHHHTCSEEEE
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHhC--CCCEEE-ECCcCCHHHHHHHHHcCCCEEEE
Confidence 8888877632211 2467889998754 344444 33234678899999999999988
No 287
>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5
Probab=56.85 E-value=32 Score=26.57 Aligned_cols=44 Identities=9% Similarity=0.102 Sum_probs=34.4
Q ss_pred CCHHHHHHHHHccCCCCCCcEEEEe--cCCCHHHHHHHHHcCCceEEe
Q 044790 35 LSGIGLLRKIMNHKTCKNIPVIMMS--SHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 35 ~~g~~~~~~ir~~~~~~~~piI~lt--~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
.+-+++++.+++.. +.+++++++ .......+.++.+.|++.+..
T Consensus 67 ~~~~e~l~~i~~~~--~~~~i~~l~~p~~~~~~~i~~a~~aGvd~v~I 112 (345)
T 1nvm_A 67 HTDLEYIEAVAGEI--SHAQIATLLLPGIGSVHDLKNAYQAGARVVRV 112 (345)
T ss_dssp SCHHHHHHHHHTTC--SSSEEEEEECBTTBCHHHHHHHHHHTCCEEEE
T ss_pred CCHHHHHHHHHhhC--CCCEEEEEecCCcccHHHHHHHHhCCcCEEEE
Confidence 56899999998754 688998884 334577889999999998754
No 288
>1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1
Probab=56.17 E-value=69 Score=25.82 Aligned_cols=61 Identities=15% Similarity=0.116 Sum_probs=42.0
Q ss_pred HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe-------CCCCHHHHHHHHHHHHHhc
Q 044790 38 IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV-------KPIRKNELQNLWQHVWRKC 99 (162)
Q Consensus 38 ~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~-------KP~~~~~L~~~i~~~l~~~ 99 (162)
+++++.+++.- ...+|||....-...+.+.+++.+||+..-. -|.-..++..-+...+...
T Consensus 360 l~~i~~v~~~v-~~~iPVIg~GGI~s~~DA~e~l~aGAd~Vqigrall~~gP~l~~~i~~~l~~~l~~~ 427 (443)
T 1tv5_A 360 TKFICEMYNYT-NKQIPIIASGGIFSGLDALEKIEAGASVCQLYSCLVFNGMKSAVQIKRELNHLLYQR 427 (443)
T ss_dssp HHHHHHHHHHT-TTCSCEEEESSCCSHHHHHHHHHTTEEEEEESHHHHHHGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc-CCCCcEEEECCCCCHHHHHHHHHcCCCEEEEcHHHHhcChHHHHHHHHHHHHHHHHh
Confidence 46777887642 1379999999999999999999999886632 2433444555555544443
No 289
>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*
Probab=55.96 E-value=60 Score=25.35 Aligned_cols=39 Identities=10% Similarity=0.058 Sum_probs=30.1
Q ss_pred HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 38 IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 38 ~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
++.+++||+. ..+||++=.. ...+.+..+.+.|++.++.
T Consensus 206 w~~i~~lr~~---~~~PvivK~v-~~~e~A~~a~~~GaD~I~v 244 (352)
T 3sgz_A 206 WNDLSLLQSI---TRLPIILKGI-LTKEDAELAMKHNVQGIVV 244 (352)
T ss_dssp HHHHHHHHHH---CCSCEEEEEE-CSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHh---cCCCEEEEec-CcHHHHHHHHHcCCCEEEE
Confidence 4678888875 3678876543 4578889999999999987
No 290
>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0
Probab=55.94 E-value=70 Score=24.88 Aligned_cols=74 Identities=19% Similarity=0.236 Sum_probs=51.1
Q ss_pred EcCHHHHHHHHHhhCCCccEEEEcCC----CC-CCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 6 VENGLQAWKILEDLMDQIDLVLTEVL----MP-CLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 6 a~~~~eal~~l~~~~~~~DlvllD~~----mp-~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
+.+.+++....+ ..+|.|.+.-. +. ...-++++..++..- ...+|||.-..-.....+.+++..||+....
T Consensus 233 ~~~~e~a~~a~~---~Gad~I~vs~~ggr~~~~~~~~~~~l~~v~~~~-~~~ipvia~GGI~~~~D~~k~l~~GAdaV~i 308 (370)
T 1gox_A 233 VITAEDARLAVQ---HGAAGIIVSNHGARQLDYVPATIMALEEVVKAA-QGRIPVFLDGGVRRGTDVFKALALGAAGVFI 308 (370)
T ss_dssp CCSHHHHHHHHH---TTCSEEEECCGGGTSSTTCCCHHHHHHHHHHHT-TTSSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred cCCHHHHHHHHH---cCCCEEEECCCCCccCCCcccHHHHHHHHHHHh-CCCCEEEEECCCCCHHHHHHHHHcCCCEEee
Confidence 345666655544 47898888431 11 124567777776632 1379999999999999999999999998843
Q ss_pred -CCC
Q 044790 81 -KPI 83 (162)
Q Consensus 81 -KP~ 83 (162)
.|+
T Consensus 309 Gr~~ 312 (370)
T 1gox_A 309 GRPV 312 (370)
T ss_dssp CHHH
T ss_pred cHHH
Confidence 443
No 291
>2gl5_A Putative dehydratase protein; structural genomics, protein structure initiati nysgxrc; 1.60A {Salmonella typhimurium} SCOP: c.1.11.2 d.54.1.1 PDB: 4e6m_A*
Probab=55.67 E-value=72 Score=24.96 Aligned_cols=80 Identities=10% Similarity=-0.030 Sum_probs=53.3
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcC-CceEEeCCCCHH
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKG-AVYFLVKPIRKN 86 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~G-a~~~l~KP~~~~ 86 (162)
+..+++++++.. .++++..+.--+|. +-++.+++|++. ..+||+.-=.........++++.| ++-+..|+...-
T Consensus 230 ~~~~ai~~~~~l-~~~~i~~iE~P~~~-~~~~~~~~l~~~---~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~G 304 (410)
T 2gl5_A 230 GTNSAIQFAKAI-EKYRIFLYEEPIHP-LNSDNMQKVSRS---TTIPIATGERSYTRWGYRELLEKQSIAVAQPDLCLCG 304 (410)
T ss_dssp CHHHHHHHHHHH-GGGCEEEEECSSCS-SCHHHHHHHHHH---CSSCEEECTTCCTTHHHHHHHHTTCCSEECCCTTTTT
T ss_pred CHHHHHHHHHHH-HhcCCCeEECCCCh-hhHHHHHHHHhh---CCCCEEecCCcCCHHHHHHHHHcCCCCEEecCccccC
Confidence 457777777664 45788777755553 337777888765 367877655555677888888887 555677886655
Q ss_pred HHHHHH
Q 044790 87 ELQNLW 92 (162)
Q Consensus 87 ~L~~~i 92 (162)
-|.+.+
T Consensus 305 Git~~~ 310 (410)
T 2gl5_A 305 GITEGK 310 (410)
T ss_dssp HHHHHH
T ss_pred CHHHHH
Confidence 554443
No 292
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=55.41 E-value=80 Score=25.41 Aligned_cols=72 Identities=14% Similarity=0.079 Sum_probs=47.6
Q ss_pred EEcCHHHHHHHHHhhCCCccEEEEcCCCC-----------CCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHc
Q 044790 5 AVENGLQAWKILEDLMDQIDLVLTEVLMP-----------CLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSK 73 (162)
Q Consensus 5 ~a~~~~eal~~l~~~~~~~DlvllD~~mp-----------~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~ 73 (162)
.+.+.+++..+. + ..+|.|.+...-. +...+.++..+........+|||.-..-.....+.+++.+
T Consensus 285 ~~~t~e~a~~l~-~--~G~d~I~v~~~~G~~~~~~~~~~~g~p~~~~l~~v~~~~~~~~ipvia~GGI~~~~di~kala~ 361 (494)
T 1vrd_A 285 NVATPEGTEALI-K--AGADAVKVGVGPGSICTTRVVAGVGVPQLTAVMECSEVARKYDVPIIADGGIRYSGDIVKALAA 361 (494)
T ss_dssp EECSHHHHHHHH-H--TTCSEEEECSSCSTTCHHHHHHCCCCCHHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHT
T ss_pred CcCCHHHHHHHH-H--cCCCEEEEcCCCCccccccccCCCCccHHHHHHHHHHHHhhcCCCEEEECCcCCHHHHHHHHHc
Confidence 355677775544 4 4689998844210 1233455555543211147999998888899999999999
Q ss_pred CCceEE
Q 044790 74 GAVYFL 79 (162)
Q Consensus 74 Ga~~~l 79 (162)
||+...
T Consensus 362 GAd~V~ 367 (494)
T 1vrd_A 362 GAESVM 367 (494)
T ss_dssp TCSEEE
T ss_pred CCCEEE
Confidence 999875
No 293
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1
Probab=55.36 E-value=55 Score=26.31 Aligned_cols=65 Identities=12% Similarity=0.042 Sum_probs=44.4
Q ss_pred HHHHHHHhhCCCccEEEEcCCCCCCC-HHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 11 QAWKILEDLMDQIDLVLTEVLMPCLS-GIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 11 eal~~l~~~~~~~DlvllD~~mp~~~-g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
+..+++.. ..+|.|+++....... -++++++++... +.+|++ .-.-...+....++++|++.+..
T Consensus 236 ~~a~~l~~--~G~d~ivi~~a~g~~~~~~~~i~~l~~~~--p~~pvi-~G~v~t~~~a~~~~~~Gad~I~v 301 (491)
T 1zfj_A 236 ERAEALFE--AGADAIVIDTAHGHSAGVLRKIAEIRAHF--PNRTLI-AGNIATAEGARALYDAGVDVVKV 301 (491)
T ss_dssp HHHHHHHH--HTCSEEEECCSCTTCHHHHHHHHHHHHHC--SSSCEE-EEEECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHH--cCCCeEEEeeecCcchhHHHHHHHHHHHC--CCCcEe-CCCccCHHHHHHHHHcCCCEEEE
Confidence 33444555 4799999998543222 256778887653 578887 54555678888999999998743
No 294
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*
Probab=55.35 E-value=57 Score=24.40 Aligned_cols=61 Identities=13% Similarity=0.158 Sum_probs=42.5
Q ss_pred HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe-------CCCCHHHHHHHHHHHHHhc
Q 044790 38 IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV-------KPIRKNELQNLWQHVWRKC 99 (162)
Q Consensus 38 ~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~-------KP~~~~~L~~~i~~~l~~~ 99 (162)
+++++++++.- ...+|||....-...+.+.+++..||+.... -|.-..++..-+...+...
T Consensus 229 ~~~i~~v~~~~-~~~ipvi~~GGI~~~~da~~~l~~GAd~V~vg~~~l~~~p~~~~~i~~~l~~~l~~~ 296 (311)
T 1jub_A 229 LANVRAFYTRL-KPEIQIIGTGGIETGQDAFEHLLCGATMLQIGTALHKEGPAIFDRIIKELEEIMNQK 296 (311)
T ss_dssp HHHHHHHHTTS-CTTSEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHHCTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-CCCCCEEEECCCCCHHHHHHHHHcCCCEEEEchHHHhcCcHHHHHHHHHHHHHHHHc
Confidence 67778887642 1379999999999999999999999987732 3433445555555555543
No 295
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=55.20 E-value=65 Score=24.31 Aligned_cols=66 Identities=20% Similarity=0.190 Sum_probs=45.0
Q ss_pred EEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHH-HccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 4 IAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKI-MNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 4 ~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~i-r~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
..+++.+++.+.+.. ..|.|.+|-.-| +.++.+ +... ..+|+++ ++.-..+.+....+.|++.+-.
T Consensus 201 Vev~t~eea~eA~~a---GaD~I~ld~~~~-----~~~k~av~~v~--~~ipi~A-sGGIt~eni~~~a~tGvD~IsV 267 (286)
T 1x1o_A 201 VEVRSLEELEEALEA---GADLILLDNFPL-----EALREAVRRVG--GRVPLEA-SGNMTLERAKAAAEAGVDYVSV 267 (286)
T ss_dssp EEESSHHHHHHHHHH---TCSEEEEESCCH-----HHHHHHHHHHT--TSSCEEE-ESSCCHHHHHHHHHHTCSEEEC
T ss_pred EEeCCHHHHHHHHHc---CCCEEEECCCCH-----HHHHHHHHHhC--CCCeEEE-EcCCCHHHHHHHHHcCCCEEEE
Confidence 367889999888865 689999997433 222222 2222 3567665 5556788899999999987753
No 296
>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A*
Probab=55.16 E-value=76 Score=25.03 Aligned_cols=74 Identities=19% Similarity=0.203 Sum_probs=52.0
Q ss_pred EcCHHHHHHHHHhhCCCccEEEEcCCC-----CCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceE-E
Q 044790 6 VENGLQAWKILEDLMDQIDLVLTEVLM-----PCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYF-L 79 (162)
Q Consensus 6 a~~~~eal~~l~~~~~~~DlvllD~~m-----p~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~-l 79 (162)
+.+.++|....+ ..+|.|++.-.- .+..-++++..+++.- ...+|||+-..-....++.+++..||+.. +
T Consensus 260 v~~~e~A~~a~~---aGad~I~vs~~ggr~~~~g~~~~~~l~~v~~av-~~~ipVia~GGI~~g~Dv~kalalGAd~V~i 335 (392)
T 2nzl_A 260 ILRGDDAREAVK---HGLNGILVSNHGARQLDGVPATIDVLPEIVEAV-EGKVEVFLDGGVRKGTDVLKALALGAKAVFV 335 (392)
T ss_dssp ECCHHHHHHHHH---TTCCEEEECCGGGTSSTTCCCHHHHHHHHHHHH-TTSSEEEECSSCCSHHHHHHHHHTTCSEEEE
T ss_pred cCCHHHHHHHHH---cCCCEEEeCCCCCCcCCCCcChHHHHHHHHHHc-CCCCEEEEECCCCCHHHHHHHHHhCCCeeEE
Confidence 456677665554 478999884321 1334577777776532 13699999888899999999999999988 4
Q ss_pred eCCC
Q 044790 80 VKPI 83 (162)
Q Consensus 80 ~KP~ 83 (162)
-.|+
T Consensus 336 Gr~~ 339 (392)
T 2nzl_A 336 GRPI 339 (392)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 4554
No 297
>2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae}
Probab=55.16 E-value=51 Score=24.07 Aligned_cols=71 Identities=10% Similarity=-0.025 Sum_probs=50.2
Q ss_pred cCHHHHHHHHHhhCCCccEEEEcCCCC---CCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHH-HcCCceEEeC
Q 044790 7 ENGLQAWKILEDLMDQIDLVLTEVLMP---CLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCL-SKGAVYFLVK 81 (162)
Q Consensus 7 ~~~~eal~~l~~~~~~~DlvllD~~mp---~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~-~~Ga~~~l~K 81 (162)
.+..+|++++.+ ..++=||..=.-+ -.+|++.++.+.+.. ..-..|+..+--..+.+...+ ..|+..|-..
T Consensus 133 ~d~~~ale~L~~--lGv~rILTSG~~~~~~a~~g~~~L~~Lv~~a--~~ri~Im~GgGV~~~Ni~~l~~~tGv~e~H~s 207 (224)
T 2bdq_A 133 SDQKKSIDQLVA--LGFTRILLHGSSNGEPIIENIKHIKALVEYA--NNRIEIMVGGGVTAENYQYICQETGVKQAHGT 207 (224)
T ss_dssp TTHHHHHHHHHH--TTCCEEEECSCSSCCCGGGGHHHHHHHHHHH--TTSSEEEECSSCCTTTHHHHHHHHTCCEEEET
T ss_pred cCHHHHHHHHHH--cCCCEEECCCCCCCCcHHHHHHHHHHHHHhh--CCCeEEEeCCCCCHHHHHHHHHhhCCCEEccc
Confidence 678999999999 7899999865444 488999998886543 233455555555666666655 4799888543
No 298
>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032}
Probab=54.88 E-value=56 Score=25.51 Aligned_cols=64 Identities=17% Similarity=0.229 Sum_probs=40.7
Q ss_pred HHHHHHHHhhCCCccEEEEcCCC-------CCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 10 LQAWKILEDLMDQIDLVLTEVLM-------PCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 10 ~eal~~l~~~~~~~DlvllD~~m-------p~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
.+..+.+.+ ..+|++.++..- |.. .++.+.++++. ..+|||+ -.-...+.+..+++.|++.+..
T Consensus 168 ~e~a~~~~~--agad~i~i~~~~~~~~~~~~~~-~~~~i~~l~~~---~~~pvi~-ggi~t~e~a~~~~~~Gad~i~v 238 (393)
T 2qr6_A 168 REIAPIVIK--AGADLLVIQGTLISAEHVNTGG-EALNLKEFIGS---LDVPVIA-GGVNDYTTALHMMRTGAVGIIV 238 (393)
T ss_dssp HHHHHHHHH--TTCSEEEEECSSCCSSCCCC------CHHHHHHH---CSSCEEE-ECCCSHHHHHHHHTTTCSEEEE
T ss_pred HHHHHHHHH--CCCCEEEEeCCccccccCCCcc-cHHHHHHHHHh---cCCCEEE-CCcCCHHHHHHHHHcCCCEEEE
Confidence 333444444 568988887421 111 34557777765 3789887 4445678899999999999876
No 299
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A
Probab=54.65 E-value=17 Score=26.31 Aligned_cols=69 Identities=12% Similarity=0.090 Sum_probs=48.9
Q ss_pred cCHHHHHHHHHhhCCCccEE-EEcCCC---CCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeC
Q 044790 7 ENGLQAWKILEDLMDQIDLV-LTEVLM---PCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVK 81 (162)
Q Consensus 7 ~~~~eal~~l~~~~~~~Dlv-llD~~m---p~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~K 81 (162)
.+..+..+.+.+ ...|.| +.|... ....-+++++.|+ . ..+||++...-...+.+..+++.|++..+.=
T Consensus 30 ~~~~~~a~~~~~--~Gad~i~v~d~~~~~~~~~~~~~~i~~i~-~---~~ipvi~~Ggi~~~~~~~~~~~~Gad~V~lg 102 (241)
T 1qo2_A 30 KDPVELVEKLIE--EGFTLIHVVDLSNAIENSGENLPVLEKLS-E---FAEHIQIGGGIRSLDYAEKLRKLGYRRQIVS 102 (241)
T ss_dssp SCHHHHHHHHHH--TTCCCEEEEEHHHHHHCCCTTHHHHHHGG-G---GGGGEEEESSCCSHHHHHHHHHTTCCEEEEC
T ss_pred cCHHHHHHHHHH--cCCCEEEEecccccccCCchhHHHHHHHH-h---cCCcEEEECCCCCHHHHHHHHHCCCCEEEEC
Confidence 466777777777 667655 445322 1112266777776 3 4799999999999999999999999988653
No 300
>3ib6_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Listeria monocytogenes}
Probab=54.65 E-value=47 Score=22.52 Aligned_cols=37 Identities=14% Similarity=0.068 Sum_probs=23.3
Q ss_pred HHHHHHHHHccCCCCCCcEEEEecCCC---HHHHHHHHHcCCce
Q 044790 37 GIGLLRKIMNHKTCKNIPVIMMSSHDS---MSIVFKCLSKGAVY 77 (162)
Q Consensus 37 g~~~~~~ir~~~~~~~~piI~lt~~~~---~~~~~~a~~~Ga~~ 77 (162)
-.++++.|++ ..+++.++|.... .......-..|...
T Consensus 39 ~~~~L~~L~~----~g~~~~i~Tn~~~~~~~~~~~~l~~~gl~~ 78 (189)
T 3ib6_A 39 AKETLEKVKQ----LGFKQAILSNTATSDTEVIKRVLTNFGIID 78 (189)
T ss_dssp HHHHHHHHHH----TTCEEEEEECCSSCCHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHH----CCCEEEEEECCCccchHHHHHHHHhcCchh
Confidence 3578889887 3689999997654 33333333456543
No 301
>3l12_A Putative glycerophosphoryl diester phosphodiester; struct genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.60A {Silicibacter pomeroyi}
Probab=54.44 E-value=41 Score=25.39 Aligned_cols=48 Identities=8% Similarity=0.080 Sum_probs=34.2
Q ss_pred HHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHH
Q 044790 39 GLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQ 93 (162)
Q Consensus 39 ~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~ 93 (162)
++++.++. ..++|.+.|- ++++.+.++++.|++++++- .++.+.+.++
T Consensus 259 ~~v~~~~~----~Gl~V~~WTV-n~~~~~~~l~~~GVDgIiTD--~P~~~~~~l~ 306 (313)
T 3l12_A 259 ELVAEAHD----LGLIVLTWTV-NEPEDIRRMATTGVDGIVTD--YPGRTQRILI 306 (313)
T ss_dssp HHHHHHHH----TTCEEEEBCC-CSHHHHHHHHHHTCSEEEES--CHHHHHHHHH
T ss_pred HHHHHHHH----CCCEEEEEcC-CCHHHHHHHHHcCCCEEEeC--CHHHHHHHHH
Confidence 45555554 4688888884 67888899999999999974 3455555443
No 302
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=54.18 E-value=71 Score=24.45 Aligned_cols=75 Identities=12% Similarity=0.094 Sum_probs=49.8
Q ss_pred HHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHH
Q 044790 10 LQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQ 89 (162)
Q Consensus 10 ~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~ 89 (162)
.+..+++.. .|++|+=... +.-|..+++.+. ..+|||+... . ...+.+..|..+++..|.+.++|.
T Consensus 317 ~~~~~~~~~----adv~v~ps~~-e~~~~~~~Eama-----~G~PvI~~~~-~---~~~e~i~~~~~g~~~~~~d~~~la 382 (438)
T 3c48_A 317 SELVAVYRA----ADIVAVPSFN-ESFGLVAMEAQA-----SGTPVIAARV-G---GLPIAVAEGETGLLVDGHSPHAWA 382 (438)
T ss_dssp HHHHHHHHH----CSEEEECCSC-CSSCHHHHHHHH-----TTCCEEEESC-T---THHHHSCBTTTEEEESSCCHHHHH
T ss_pred HHHHHHHHh----CCEEEECccc-cCCchHHHHHHH-----cCCCEEecCC-C---ChhHHhhCCCcEEECCCCCHHHHH
Confidence 455555554 4777664432 334566777764 4788886543 2 233446678889999999999999
Q ss_pred HHHHHHHHh
Q 044790 90 NLWQHVWRK 98 (162)
Q Consensus 90 ~~i~~~l~~ 98 (162)
..|..++..
T Consensus 383 ~~i~~l~~~ 391 (438)
T 3c48_A 383 DALATLLDD 391 (438)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHcC
Confidence 999988763
No 303
>3e8m_A Acylneuraminate cytidylyltransferase; 2-keto-3-deoxynononic acid 9-phosphate phosphohydrolase, nucleotidyltransferase; HET: PEG PG4 EDO PGE; 1.10A {Bacteroides thetaiotaomicron} PDB: 3e84_A 3e81_A*
Probab=53.96 E-value=44 Score=21.93 Aligned_cols=53 Identities=13% Similarity=0.056 Sum_probs=37.2
Q ss_pred HHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHH
Q 044790 40 LLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVW 96 (162)
Q Consensus 40 ~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l 96 (162)
+++.+++ ..+++.++|..........+-..|...|+...-+..+....+.+.+
T Consensus 39 ~l~~l~~----~g~~~~i~T~~~~~~~~~~~~~~gl~~~~~~~kpk~~~~~~~~~~~ 91 (164)
T 3e8m_A 39 GIFWAHN----KGIPVGILTGEKTEIVRRRAEKLKVDYLFQGVVDKLSAAEELCNEL 91 (164)
T ss_dssp HHHHHHH----TTCCEEEECSSCCHHHHHHHHHTTCSEEECSCSCHHHHHHHHHHHH
T ss_pred HHHHHHH----CCCEEEEEeCCChHHHHHHHHHcCCCEeecccCChHHHHHHHHHHc
Confidence 3777776 3689999999877776666667899998876555555555554443
No 304
>2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A*
Probab=53.68 E-value=28 Score=26.04 Aligned_cols=59 Identities=12% Similarity=0.081 Sum_probs=39.9
Q ss_pred HHHHHHHHHccCCCCCCcEE--EEecCCCHHHHHHHHHcCCceEEe-----CCCCHHHHHHHHHHHHHh
Q 044790 37 GIGLLRKIMNHKTCKNIPVI--MMSSHDSMSIVFKCLSKGAVYFLV-----KPIRKNELQNLWQHVWRK 98 (162)
Q Consensus 37 g~~~~~~ir~~~~~~~~piI--~lt~~~~~~~~~~a~~~Ga~~~l~-----KP~~~~~L~~~i~~~l~~ 98 (162)
.++.++++++. ..+|+| +...-...+.+.+++++|++.++. +.-++.+....+...+..
T Consensus 195 ~~~~i~~l~~~---~~~pvi~~a~GGI~~~e~i~~~~~aGadgvvvGsai~~~~dp~~~~~~l~~~i~~ 260 (297)
T 2zbt_A 195 PFELVKWVHDH---GRLPVVNFAAGGIATPADAALMMHLGMDGVFVGSGIFKSGDPRKRARAIVRAVAH 260 (297)
T ss_dssp CHHHHHHHHHH---SSCSSCEEBCSSCCSHHHHHHHHHTTCSEEEECGGGGGSSCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHh---cCCCcEEEeeCCCCCHHHHHHHHHcCCCEEEEchHHhCCCCHHHHHHHHHHHHHH
Confidence 46777888764 367776 444444789999999999999863 333566666666665544
No 305
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Probab=53.12 E-value=38 Score=27.61 Aligned_cols=69 Identities=9% Similarity=-0.105 Sum_probs=47.3
Q ss_pred cCHHHHHHHHHhhCCCccEEEEcCCCCCCCH-HHHHHHHHccCCCCC-CcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 7 ENGLQAWKILEDLMDQIDLVLTEVLMPCLSG-IGLLRKIMNHKTCKN-IPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 7 ~~~~eal~~l~~~~~~~DlvllD~~mp~~~g-~~~~~~ir~~~~~~~-~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
.+..+.++.+.+ ..++++.+|..-....+ ++.+++|+... +. +||| +..-...+.+..+.++|++....
T Consensus 241 ~~~~e~~~~l~e--~gv~~l~Vd~~~g~~~~~~~~i~~lk~~~--~~~~~Vi-~G~V~t~~~a~~l~~aGad~I~V 311 (503)
T 1me8_A 241 RDFRERVPALVE--AGADVLCIDSSDGFSEWQKITIGWIREKY--GDKVKVG-AGNIVDGEGFRYLADAGADFIKI 311 (503)
T ss_dssp SSHHHHHHHHHH--HTCSEEEECCSCCCSHHHHHHHHHHHHHH--GGGSCEE-EEEECSHHHHHHHHHHTCSEEEE
T ss_pred hhHHHHHHHHHh--hhccceEEecccCcccchhhHHHHHHHhC--CCCceEe-eccccCHHHHHHHHHhCCCeEEe
Confidence 444566666666 57899999887544433 56678887753 45 7777 34445677888999999988754
No 306
>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*
Probab=53.06 E-value=22 Score=26.78 Aligned_cols=65 Identities=9% Similarity=0.042 Sum_probs=39.5
Q ss_pred HHHHHHHHhhCCCcc---EEEEcCCCCCCCH-----------HHHHHHHHccCCCCCCcEEEEecCC-CHHH----HHHH
Q 044790 10 LQAWKILEDLMDQID---LVLTEVLMPCLSG-----------IGLLRKIMNHKTCKNIPVIMMSSHD-SMSI----VFKC 70 (162)
Q Consensus 10 ~eal~~l~~~~~~~D---lvllD~~mp~~~g-----------~~~~~~ir~~~~~~~~piI~lt~~~-~~~~----~~~a 70 (162)
.++.+.+.+ ..+| .|-+.+..|...| .++++.+|+.. .+||++-.... +.+. +..+
T Consensus 109 ~~~a~~~~~--~g~d~~~~iein~~~P~~~g~~~~g~~~~~~~~ii~~vr~~~---~~Pv~vK~~~~~~~~~~~~~a~~~ 183 (314)
T 2e6f_A 109 VAMVRRLAP--VAQEKGVLLELNLSCPNVPGKPQVAYDFEAMRTYLQQVSLAY---GLPFGVKMPPYFDIAHFDTAAAVL 183 (314)
T ss_dssp HHHHHHHHH--HHHHHCCEEEEECCCCCSTTCCCGGGSHHHHHHHHHHHHHHH---CSCEEEEECCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHH--hCCCcCceEEEEcCCCCCCCchhhcCCHHHHHHHHHHHHHhc---CCCEEEEECCCCCHHHHHHHHHHH
Confidence 444455554 4578 8888876665432 45777887642 57887754432 3333 4556
Q ss_pred HHcC-CceEE
Q 044790 71 LSKG-AVYFL 79 (162)
Q Consensus 71 ~~~G-a~~~l 79 (162)
.+.| ++.+.
T Consensus 184 ~~aG~~d~i~ 193 (314)
T 2e6f_A 184 NEFPLVKFVT 193 (314)
T ss_dssp HTCTTEEEEE
T ss_pred HhcCCceEEE
Confidence 6789 87765
No 307
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=52.86 E-value=73 Score=24.16 Aligned_cols=67 Identities=12% Similarity=0.140 Sum_probs=44.6
Q ss_pred EEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEE
Q 044790 3 VIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFL 79 (162)
Q Consensus 3 v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l 79 (162)
.+.+.+.+++.+.++. ..|.|.+|- ++- +.++.+.+.- ...++|. .++.-..+.+....+.|++.+-
T Consensus 212 ~vev~tlee~~eA~~a---GaD~I~ld~----~~~-e~l~~~v~~~-~~~~~I~-ASGGIt~~~i~~~a~~GvD~is 278 (296)
T 1qap_A 212 EVEVENLDELDDALKA---GADIIMLDN----FNT-DQMREAVKRV-NGQARLE-VSGNVTAETLREFAETGVDFIS 278 (296)
T ss_dssp EEEESSHHHHHHHHHT---TCSEEEESS----CCH-HHHHHHHHTT-CTTCCEE-ECCCSCHHHHHHHHHTTCSEEE
T ss_pred EEEeCCHHHHHHHHHc---CCCEEEECC----CCH-HHHHHHHHHh-CCCCeEE-EECCCCHHHHHHHHHcCCCEEE
Confidence 3467788888887754 699999995 333 4444443321 1355554 5555688999999999996654
No 308
>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*
Probab=52.74 E-value=80 Score=24.62 Aligned_cols=72 Identities=17% Similarity=0.176 Sum_probs=51.7
Q ss_pred EEcCHHHHHHHHHhhCCCccEEEEcCC----C-CCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEE
Q 044790 5 AVENGLQAWKILEDLMDQIDLVLTEVL----M-PCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFL 79 (162)
Q Consensus 5 ~a~~~~eal~~l~~~~~~~DlvllD~~----m-p~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l 79 (162)
.+.+.++|....+ ..+|.|++.-. + .+...++++..++..- ...+|||.-..-.....+.+++.+||+...
T Consensus 224 ~v~~~e~A~~a~~---~GaD~I~vsn~GG~~~d~~~~~~~~L~~i~~av-~~~ipVia~GGI~~g~Dv~kaLalGA~aV~ 299 (352)
T 3sgz_A 224 GILTKEDAELAMK---HNVQGIVVSNHGGRQLDEVSASIDALREVVAAV-KGKIEVYMDGGVRTGTDVLKALALGARCIF 299 (352)
T ss_dssp EECSHHHHHHHHH---TTCSEEEECCGGGTSSCSSCCHHHHHHHHHHHH-TTSSEEEEESSCCSHHHHHHHHHTTCSEEE
T ss_pred ecCcHHHHHHHHH---cCCCEEEEeCCCCCccCCCccHHHHHHHHHHHh-CCCCeEEEECCCCCHHHHHHHHHcCCCEEE
Confidence 3456777766554 47899887431 1 1235578887776531 147999999999999999999999999884
Q ss_pred e
Q 044790 80 V 80 (162)
Q Consensus 80 ~ 80 (162)
.
T Consensus 300 i 300 (352)
T 3sgz_A 300 L 300 (352)
T ss_dssp E
T ss_pred E
Confidence 3
No 309
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=52.64 E-value=70 Score=23.86 Aligned_cols=75 Identities=11% Similarity=-0.034 Sum_probs=48.2
Q ss_pred CCccEEEEcCC-----CCCC-CHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeC------------C
Q 044790 21 DQIDLVLTEVL-----MPCL-SGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVK------------P 82 (162)
Q Consensus 21 ~~~DlvllD~~-----mp~~-~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~K------------P 82 (162)
..++.|.+-.. +|.| +-+++++.+++. +.+++.++. .....+.++++.|++.+-.- -
T Consensus 38 ~Gv~~IE~g~~~~~~~~p~~~~~~e~~~~i~~~---~~~~v~~l~--~n~~~i~~a~~~G~~~V~i~~~~S~~h~~~~~~ 112 (295)
T 1ydn_A 38 CGYARIEATSFVSPKWVPQLADSREVMAGIRRA---DGVRYSVLV--PNMKGYEAAAAAHADEIAVFISASEGFSKANIN 112 (295)
T ss_dssp TTCSEEEEEECSCTTTCGGGTTHHHHHHHSCCC---SSSEEEEEC--SSHHHHHHHHHTTCSEEEEEEESCHHHHHHHTS
T ss_pred cCcCEEEEccCcCccccccccCHHHHHHHHHhC---CCCEEEEEe--CCHHHHHHHHHCCCCEEEEEEecCHHHHHHHcC
Confidence 46777777531 2322 567888888653 578887777 35778899999999866332 2
Q ss_pred CCHHHHHHHHHHHHHhcc
Q 044790 83 IRKNELQNLWQHVWRKCH 100 (162)
Q Consensus 83 ~~~~~L~~~i~~~l~~~~ 100 (162)
.+.++.++.+..+++..+
T Consensus 113 ~~~~e~~~~~~~~v~~a~ 130 (295)
T 1ydn_A 113 CTIAESIERLSPVIGAAI 130 (295)
T ss_dssp SCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 345666666666655443
No 310
>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2
Probab=52.53 E-value=16 Score=26.19 Aligned_cols=58 Identities=17% Similarity=0.197 Sum_probs=36.9
Q ss_pred CccEEEEcCCCCCCCH-------HHHHHHHHccC--CCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 22 QIDLVLTEVLMPCLSG-------IGLLRKIMNHK--TCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 22 ~~DlvllD~~mp~~~g-------~~~~~~ir~~~--~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
..|.|+++-..|+..| ++.++++|+.. ....+|+++.-+- ..+.+.+++++|++.++.
T Consensus 140 ~~d~vl~~~~~pg~~g~~~~~~~~~~i~~l~~~~~~~~~~~pi~v~GGI-~~~n~~~~~~aGad~vvv 206 (230)
T 1rpx_A 140 AVDLVLIMSVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGV-GPKNAYKVIEAGANALVA 206 (230)
T ss_dssp TCSEEEEESSCTTCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESSC-CTTTHHHHHHHTCCEEEE
T ss_pred hCCEEEEEEEcCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEEECCC-CHHHHHHHHHcCCCEEEE
Confidence 4688888877665444 34456665432 0025777765554 467777788999998864
No 311
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=52.43 E-value=60 Score=23.91 Aligned_cols=41 Identities=17% Similarity=0.098 Sum_probs=32.2
Q ss_pred HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeC
Q 044790 38 IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVK 81 (162)
Q Consensus 38 ~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~K 81 (162)
.+.++++|+.. .+||++=.+-..++.+.+++..||+.++.=
T Consensus 194 ~~~i~~lr~~~---~~pi~vggGI~t~e~~~~~~~agAD~vVVG 234 (268)
T 1qop_A 194 HHLIEKLKEYH---AAPALQGFGISSPEQVSAAVRAGAAGAISG 234 (268)
T ss_dssp HHHHHHHHHTT---CCCEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHhcc---CCcEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 57888888753 688776555556899999999999999864
No 312
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=52.36 E-value=50 Score=22.18 Aligned_cols=74 Identities=15% Similarity=0.073 Sum_probs=49.5
Q ss_pred HHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHH
Q 044790 9 GLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNEL 88 (162)
Q Consensus 9 ~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L 88 (162)
..+..+++. ..|++|+-... ..-|..+++.+. ..+|||+... ....+.+ .|-.+++..|-+.++|
T Consensus 106 ~~~~~~~~~----~ad~~l~ps~~-e~~~~~~~Ea~a-----~G~PvI~~~~----~~~~e~~-~~~~g~~~~~~~~~~l 170 (200)
T 2bfw_A 106 REFVRELYG----SVDFVIIPSYF-EPFGLVALEAMC-----LGAIPIASAV----GGLRDII-TNETGILVKAGDPGEL 170 (200)
T ss_dssp HHHHHHHHT----TCSEEEECCSC-CSSCHHHHHHHH-----TTCEEEEESC----HHHHHHC-CTTTCEEECTTCHHHH
T ss_pred HHHHHHHHH----HCCEEEECCCC-CCccHHHHHHHH-----CCCCEEEeCC----CChHHHc-CCCceEEecCCCHHHH
Confidence 334444443 36888875443 333566777774 4678775432 2334445 6888999999999999
Q ss_pred HHHHHHHHH
Q 044790 89 QNLWQHVWR 97 (162)
Q Consensus 89 ~~~i~~~l~ 97 (162)
...|..++.
T Consensus 171 ~~~i~~l~~ 179 (200)
T 2bfw_A 171 ANAILKALE 179 (200)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999876
No 313
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=52.01 E-value=50 Score=25.06 Aligned_cols=52 Identities=12% Similarity=0.218 Sum_probs=38.0
Q ss_pred HHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHH
Q 044790 39 GLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQH 94 (162)
Q Consensus 39 ~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~ 94 (162)
+.++.+|+.. +..+|++-+. ..+...++++.|++.+..-+++++.|...++.
T Consensus 197 ~ai~~~r~~~--~~~kI~vev~--tlee~~eA~~aGaD~I~ld~~~~e~l~~~v~~ 248 (296)
T 1qap_A 197 QAVEKAFWLH--PDVPVEVEVE--NLDELDDALKAGADIIMLDNFNTDQMREAVKR 248 (296)
T ss_dssp HHHHHHHHHS--TTSCEEEEES--SHHHHHHHHHTTCSEEEESSCCHHHHHHHHHT
T ss_pred HHHHHHHHhC--CCCcEEEEeC--CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHH
Confidence 4456666644 3446666554 34778899999999999999999999887763
No 314
>1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A
Probab=51.85 E-value=72 Score=23.81 Aligned_cols=69 Identities=22% Similarity=0.284 Sum_probs=48.8
Q ss_pred EcCHHHHHHHHHhhCCCccEEEEcCC-CCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEE
Q 044790 6 VENGLQAWKILEDLMDQIDLVLTEVL-MPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFL 79 (162)
Q Consensus 6 a~~~~eal~~l~~~~~~~DlvllD~~-mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l 79 (162)
+.+..+|++.+.. ..++=||..=. -.-.+|++.++.+.+.. . -..|+..+--..+.+...+..|+..|-
T Consensus 127 ~~d~~~ale~L~~--lG~~rILTSG~~~~a~~g~~~L~~Lv~~a--~-~i~Im~GgGv~~~Ni~~l~~tGv~e~H 196 (256)
T 1twd_A 127 CANPLYTLNNLAE--LGIARVLTSGQKSDALQGLSKIMELIAHR--D-APIIMAGAGVRAENLHHFLDAGVLEVH 196 (256)
T ss_dssp CSCHHHHHHHHHH--HTCCEEEECTTSSSTTTTHHHHHHHHTSS--S-CCEEEEESSCCTTTHHHHHHHTCSEEE
T ss_pred cCCHHHHHHHHHH--cCCCEEECCCCCCCHHHHHHHHHHHHHhh--C-CcEEEecCCcCHHHHHHHHHcCCCeEe
Confidence 4688999999998 68999997543 34578999999997654 3 234445444555555555577888776
No 315
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=51.62 E-value=71 Score=23.69 Aligned_cols=66 Identities=18% Similarity=0.322 Sum_probs=44.7
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeC-CCCHHHHHHHHHHHHHh
Q 044790 23 IDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVK-PIRKNELQNLWQHVWRK 98 (162)
Q Consensus 23 ~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~K-P~~~~~L~~~i~~~l~~ 98 (162)
.|++++-... ..-|..+++.+. ..+|||........+ .+..|..+++.. |.+.++|...|..++..
T Consensus 271 ad~~v~ps~~-e~~~~~~~Ea~a-----~G~Pvi~~~~~~~~e----~i~~~~~g~~~~~~~~~~~l~~~i~~l~~~ 337 (374)
T 2iw1_A 271 ADLLLHPAYQ-EAAGIVLLEAIT-----AGLPVLTTAVCGYAH----YIADANCGTVIAEPFSQEQLNEVLRKALTQ 337 (374)
T ss_dssp CSEEEECCSC-CSSCHHHHHHHH-----HTCCEEEETTSTTTH----HHHHHTCEEEECSSCCHHHHHHHHHHHHHC
T ss_pred cCEEEecccc-CCcccHHHHHHH-----CCCCEEEecCCCchh----hhccCCceEEeCCCCCHHHHHHHHHHHHcC
Confidence 4677664432 334566777764 367888765433333 345567889887 89999999999998763
No 316
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=51.61 E-value=66 Score=23.28 Aligned_cols=61 Identities=16% Similarity=0.167 Sum_probs=40.4
Q ss_pred HHHHHHHHHhhCCCccEEEEcCCC---CCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEE
Q 044790 9 GLQAWKILEDLMDQIDLVLTEVLM---PCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFL 79 (162)
Q Consensus 9 ~~eal~~l~~~~~~~DlvllD~~m---p~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l 79 (162)
.+++.+.+. ...|+|++|... | ..-.++++.+++. .+++ +......+...++.+.|++-+.
T Consensus 91 ~~~i~~~~~---~Gad~V~l~~~~~~~p-~~l~~~i~~~~~~----g~~v--~~~v~t~eea~~a~~~Gad~Ig 154 (232)
T 3igs_A 91 LDDVDALAQ---AGAAIIAVDGTARQRP-VAVEALLARIHHH----HLLT--MADCSSVDDGLACQRLGADIIG 154 (232)
T ss_dssp HHHHHHHHH---HTCSEEEEECCSSCCS-SCHHHHHHHHHHT----TCEE--EEECCSHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHH---cCCCEEEECccccCCH-HHHHHHHHHHHHC----CCEE--EEeCCCHHHHHHHHhCCCCEEE
Confidence 345544444 478999998863 4 3455777887753 3433 3344577888999999998764
No 317
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=51.54 E-value=45 Score=24.42 Aligned_cols=55 Identities=13% Similarity=0.040 Sum_probs=43.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCC
Q 044790 24 DLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKP 82 (162)
Q Consensus 24 DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP 82 (162)
.+|.++. .....-.+++++|++.. ..+|+++=-.-...+.+.++++ ||+..+.=.
T Consensus 165 ~~Vyl~~-~G~~~~~~~i~~i~~~~--~~~Pv~vGgGI~s~e~a~~~~~-gAd~VIVGS 219 (234)
T 2f6u_A 165 PIIYIEY-SGTYGNPELVAEVKKVL--DKARLFYGGGIDSREKAREMLR-YADTIIVGN 219 (234)
T ss_dssp SEEEEEC-TTSCCCHHHHHHHHHHC--SSSEEEEESCCCSHHHHHHHHH-HSSEEEECH
T ss_pred CEEEEeC-CCCcchHHHHHHHHHhC--CCCCEEEEecCCCHHHHHHHHh-CCCEEEECh
Confidence 8888888 54444588999998753 3789887777888999999888 999998754
No 318
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=51.49 E-value=75 Score=23.88 Aligned_cols=90 Identities=10% Similarity=0.020 Sum_probs=56.5
Q ss_pred CHHHHHHHHHhhC--CCccEEEEcC-CC-CCCCHHHHH-HHHHccCCCCCCcEEEEecCCC----HHHHHHHHHcCCceE
Q 044790 8 NGLQAWKILEDLM--DQIDLVLTEV-LM-PCLSGIGLL-RKIMNHKTCKNIPVIMMSSHDS----MSIVFKCLSKGAVYF 78 (162)
Q Consensus 8 ~~~eal~~l~~~~--~~~DlvllD~-~m-p~~~g~~~~-~~ir~~~~~~~~piI~lt~~~~----~~~~~~a~~~Ga~~~ 78 (162)
+..+.++.+.... ...-+||+|- .+ ...++.+.+ +.+...+ +++.+|+++...+ .......+..-+.-|
T Consensus 60 ~~~~l~~~~~~~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~--~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~ 137 (343)
T 1jr3_D 60 DWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLH--DDLLLIVRGNKLSKAQENAAWFTALANRSVQV 137 (343)
T ss_dssp CHHHHHHHHHHHHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCB--TTEEEEEEESCCCTTTTTSHHHHHHTTTCEEE
T ss_pred CHHHHHHHhcCcCCccCCeEEEEECCCCCCChHHHHHHHHHHhcCC--CCeEEEEEcCCCChhhHhhHHHHHHHhCceEE
Confidence 3445554443310 3456888875 44 455666654 4444333 5666666665433 234666777777788
Q ss_pred EeCCCCHHHHHHHHHHHHHhc
Q 044790 79 LVKPIRKNELQNLWQHVWRKC 99 (162)
Q Consensus 79 l~KP~~~~~L~~~i~~~l~~~ 99 (162)
-.+|.+..++...|+..+...
T Consensus 138 ~~~~l~~~~l~~~l~~~~~~~ 158 (343)
T 1jr3_D 138 TCQTPEQAQLPRWVAARAKQL 158 (343)
T ss_dssp EECCCCTTHHHHHHHHHHHHT
T ss_pred EeeCCCHHHHHHHHHHHHHHc
Confidence 889999999999999887654
No 319
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=51.39 E-value=34 Score=25.72 Aligned_cols=73 Identities=16% Similarity=0.181 Sum_probs=46.5
Q ss_pred CccEEEEcCCCCCCCH--H-HHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHHHh
Q 044790 22 QIDLVLTEVLMPCLSG--I-GLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVWRK 98 (162)
Q Consensus 22 ~~DlvllD~~mp~~~g--~-~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 98 (162)
.+.++|+|=-.- ++. . .+++.|.... ..+.+|++|.... .....+..-+.-|-.+|.+.+++...++.++..
T Consensus 134 ~~~vlilDE~~~-L~~~~~~~L~~~le~~~--~~~~~Il~t~~~~--~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~ 208 (354)
T 1sxj_E 134 RYKCVIINEANS-LTKDAQAALRRTMEKYS--KNIRLIMVCDSMS--PIIAPIKSQCLLIRCPAPSDSEISTILSDVVTN 208 (354)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHST--TTEEEEEEESCSC--SSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred CCeEEEEeCccc-cCHHHHHHHHHHHHhhc--CCCEEEEEeCCHH--HHHHHHHhhceEEecCCcCHHHHHHHHHHHHHH
Confidence 577999985322 443 2 2344454433 4566666665432 234455556677888999999999999988765
Q ss_pred c
Q 044790 99 C 99 (162)
Q Consensus 99 ~ 99 (162)
.
T Consensus 209 ~ 209 (354)
T 1sxj_E 209 E 209 (354)
T ss_dssp H
T ss_pred c
Confidence 4
No 320
>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}
Probab=50.97 E-value=30 Score=27.27 Aligned_cols=59 Identities=24% Similarity=0.328 Sum_probs=45.1
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCH
Q 044790 21 DQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRK 85 (162)
Q Consensus 21 ~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~ 85 (162)
...|+| ++.+|.+...+.++.|++. ..+|++.=. +.+...+..|++.|++.+=.-|=+.
T Consensus 58 aG~diV--Rvavp~~~~a~al~~I~~~---~~vPlvaDi-Hf~~~lal~a~e~G~dklRINPGNi 116 (366)
T 3noy_A 58 AGCEIV--RVAVPHKEDVEALEEIVKK---SPMPVIADI-HFAPSYAFLSMEKGVHGIRINPGNI 116 (366)
T ss_dssp TTCCEE--EEECCSHHHHHHHHHHHHH---CSSCEEEEC-CSCHHHHHHHHHTTCSEEEECHHHH
T ss_pred cCCCEE--EeCCCChHHHHHHHHHHhc---CCCCEEEeC-CCCHHHHHHHHHhCCCeEEECCccc
Confidence 456665 5577888888999999876 367877544 4678888999999999988777444
No 321
>1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A*
Probab=50.87 E-value=16 Score=26.01 Aligned_cols=84 Identities=11% Similarity=0.048 Sum_probs=49.1
Q ss_pred cCHHHHHHHHHhhCCCccEEEEcCCCC--CCCHHHHHHHHHccCCCCCCcEEEEe--cCCCHHHHHHHHHcCCceEEeCC
Q 044790 7 ENGLQAWKILEDLMDQIDLVLTEVLMP--CLSGIGLLRKIMNHKTCKNIPVIMMS--SHDSMSIVFKCLSKGAVYFLVKP 82 (162)
Q Consensus 7 ~~~~eal~~l~~~~~~~DlvllD~~mp--~~~g~~~~~~ir~~~~~~~~piI~lt--~~~~~~~~~~a~~~Ga~~~l~KP 82 (162)
.+..++++.+++. ...+..+|+.++ -..|.++++.||+.. ++.++++=. ..........+.++|++-+..-+
T Consensus 13 ~~~~~~~~~~~~~--~~~v~~~kv~~~~f~~~G~~~i~~l~~~~--p~~~v~lD~kl~dip~t~~~~~~~~Gad~itvh~ 88 (216)
T 1q6o_A 13 QTMDSAYETTRLI--AEEVDIIEVGTILCVGEGVRAVRDLKALY--PHKIVLADAKIADAGKILSRMCFEANADWVTVIC 88 (216)
T ss_dssp SSHHHHHHHHHHH--GGGCSEEEECHHHHHHHCTHHHHHHHHHC--TTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEET
T ss_pred CCHHHHHHHHHHh--cccCCEEEECHHHHHHhCHHHHHHHHHhC--CCCeEEEEEEecccHHHHHHHHHhCCCCEEEEec
Confidence 4678888888763 222233476555 234567788888753 455655311 11223445577789999887777
Q ss_pred CCHHH-HHHHHHH
Q 044790 83 IRKNE-LQNLWQH 94 (162)
Q Consensus 83 ~~~~~-L~~~i~~ 94 (162)
..-.+ +...++.
T Consensus 89 ~~g~~~l~~~~~~ 101 (216)
T 1q6o_A 89 CADINTAKGALDV 101 (216)
T ss_dssp TSCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH
Confidence 55554 4444433
No 322
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=50.54 E-value=88 Score=24.46 Aligned_cols=67 Identities=10% Similarity=0.078 Sum_probs=45.9
Q ss_pred EcCHHHHHHHHHhhCCCccEEEEcCCCCCC------------CHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHc
Q 044790 6 VENGLQAWKILEDLMDQIDLVLTEVLMPCL------------SGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSK 73 (162)
Q Consensus 6 a~~~~eal~~l~~~~~~~DlvllD~~mp~~------------~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~ 73 (162)
+.+.++|..+.+. ..|.|.+... |+. .-++.+..+... .. |||.-..-.....+.+++.+
T Consensus 149 V~T~e~A~~a~~a---GaD~I~Vg~g-~G~~~~tr~~~g~g~p~l~aI~~~~~~---~~-PVIAdGGI~~~~di~kALa~ 220 (361)
T 3r2g_A 149 VATYAGADYLASC---GADIIKAGIG-GGSVCSTRIKTGFGVPMLTCIQDCSRA---DR-SIVADGGIKTSGDIVKALAF 220 (361)
T ss_dssp ECSHHHHHHHHHT---TCSEEEECCS-SSSCHHHHHHHCCCCCHHHHHHHHTTS---SS-EEEEESCCCSHHHHHHHHHT
T ss_pred cCCHHHHHHHHHc---CCCEEEEcCC-CCcCccccccCCccHHHHHHHHHHHHh---CC-CEEEECCCCCHHHHHHHHHc
Confidence 6678888776654 7899998543 322 233444444332 12 88888888889999999999
Q ss_pred CCceEEe
Q 044790 74 GAVYFLV 80 (162)
Q Consensus 74 Ga~~~l~ 80 (162)
||+....
T Consensus 221 GAd~V~i 227 (361)
T 3r2g_A 221 GADFVMI 227 (361)
T ss_dssp TCSEEEE
T ss_pred CCCEEEE
Confidence 9987753
No 323
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*
Probab=50.48 E-value=57 Score=24.35 Aligned_cols=54 Identities=9% Similarity=0.041 Sum_probs=39.7
Q ss_pred HHHHHHHHccCCCCC-CcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHH
Q 044790 38 IGLLRKIMNHKTCKN-IPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHV 95 (162)
Q Consensus 38 ~~~~~~ir~~~~~~~-~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~ 95 (162)
.+.++.+|+.. +. .+|++-+. ..+...++++.|++....-+++++.|...++.+
T Consensus 169 ~~ai~~~r~~~--~~~~~i~vev~--tlee~~~A~~aGaD~I~ld~~~~~~l~~~v~~l 223 (273)
T 2b7n_A 169 KSFLTHARKNL--PFTAKIEIECE--SFEEAKNAMNAGADIVMCDNLSVLETKEIAAYR 223 (273)
T ss_dssp HHHHHHHGGGS--CTTCCEEEEES--SHHHHHHHHHHTCSEEEEETCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC--CCCceEEEEcC--CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Confidence 45677777654 33 56666543 347788899999999989999999988777744
No 324
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=50.14 E-value=58 Score=22.21 Aligned_cols=71 Identities=20% Similarity=0.316 Sum_probs=45.0
Q ss_pred ccEEEEcCCCCC-CCHHHHHHHHHccCCCCCCcEEEEecCC---CHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHHHh
Q 044790 23 IDLVLTEVLMPC-LSGIGLLRKIMNHKTCKNIPVIMMSSHD---SMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVWRK 98 (162)
Q Consensus 23 ~DlvllD~~mp~-~~g~~~~~~ir~~~~~~~~piI~lt~~~---~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 98 (162)
.|+||..+.-|+ ..++|+--... ...||+++.... ....+.+....| ..|..+.+...+|...|.+.+..
T Consensus 69 aD~vvA~l~~~d~Gt~~EiG~A~a-----lgkPV~~l~~~~~~~~ls~mi~G~~~~-~~~~~~~Y~~~el~~il~~f~~~ 142 (152)
T 4fyk_A 69 ADVVVAEVTQPSLGVGYELGRAVA-----LGKPILCLFRPQSGRVLSAMIRGAADG-SRFQVWDYAEGEVETMLDRYFEA 142 (152)
T ss_dssp CSEEEEECSSCCHHHHHHHHHHHH-----TTCCEEEEECGGGSCCCCHHHHHHCCS-SSEEEEECCTTCHHHHHHHHHC-
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHH-----cCCeEEEEEeCCccchhHHHHcCCCCC-CeEEEEEecHHHHHHHHHHHHHh
Confidence 799999877554 24466554443 467999887633 223334443333 55888888888998888887654
Q ss_pred c
Q 044790 99 C 99 (162)
Q Consensus 99 ~ 99 (162)
.
T Consensus 143 ~ 143 (152)
T 4fyk_A 143 Y 143 (152)
T ss_dssp -
T ss_pred h
Confidence 3
No 325
>4h83_A Mandelate racemase/muconate lactonizing enzyme; structural genomics, enzyme function initiative; 2.09A {Marine actinobacterium PHSC20C1} PDB: 3no1_A 3msy_A
Probab=50.04 E-value=43 Score=26.24 Aligned_cols=72 Identities=13% Similarity=0.085 Sum_probs=48.9
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEE-eCCC
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFL-VKPI 83 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l-~KP~ 83 (162)
+..+|+++++.. .++++..+.=-++..+-++.++.|++.. .+||..==.........++++.|+-+++ .|+.
T Consensus 221 ~~~~A~~~~~~l-~~~~~~~iEeP~~~~~d~~~~~~l~~~~---~ipIa~dE~~~~~~~~~~~i~~~a~d~i~~d~~ 293 (388)
T 4h83_A 221 KPAVAVDLSRRI-ADLNIRWFEEPVEWHNDKRSMRDVRYQG---SVPVCAGQTEFSASGCRDLMETGAIDVCNFDSS 293 (388)
T ss_dssp CHHHHHHHHHHT-TTSCCCCEESCBCSTTHHHHHHHHHHHS---SSCEEECTTCSSHHHHHHHHHHTCCSEECCCGG
T ss_pred CHHHHHHHHHHh-hhcCcceeecCcccccchHHHHHHHhhc---CCCccCCccccChHhHHHHHHcCCCCeEeecce
Confidence 567888888764 5678777765555556778888888753 6776532233456777888888877775 4543
No 326
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=49.98 E-value=67 Score=22.88 Aligned_cols=69 Identities=12% Similarity=0.058 Sum_probs=49.2
Q ss_pred cCHHHHHHHHHhhCCCccEEEEcC----CCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeC
Q 044790 7 ENGLQAWKILEDLMDQIDLVLTEV----LMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVK 81 (162)
Q Consensus 7 ~~~~eal~~l~~~~~~~DlvllD~----~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~K 81 (162)
.+..+..+.+.+ ...|.|-++. .-+...- ++++.|++. ..+|+++--.-.+++.+..+++.||+..+.=
T Consensus 31 ~d~~~~a~~~~~--~Gad~i~v~~~d~~~~~~~~~-~~i~~i~~~---~~ipv~v~ggi~~~~~~~~~l~~Gad~V~lg 103 (244)
T 2y88_A 31 GSAVDAALGWQR--DGAEWIHLVDLDAAFGRGSNH-ELLAEVVGK---LDVQVELSGGIRDDESLAAALATGCARVNVG 103 (244)
T ss_dssp EEHHHHHHHHHH--TTCSEEEEEEHHHHTTSCCCH-HHHHHHHHH---CSSEEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred CCHHHHHHHHHH--cCCCEEEEEcCcccccCCChH-HHHHHHHHh---cCCcEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 366777777777 6777777653 1123333 788888765 3789988766677888999999999987754
No 327
>1req_B Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 1e1c_B* 2req_B* 3req_B* 4req_B* 5req_B* 6req_B* 7req_B*
Probab=49.98 E-value=26 Score=29.81 Aligned_cols=79 Identities=4% Similarity=-0.122 Sum_probs=51.1
Q ss_pred HHHHHHHHhhCCCccEEEEcCCCCC-CC-HHHHHHHHHccCCCCCCcEEEEecCCCHH--HHHHHHHcCCceEEeCCCCH
Q 044790 10 LQAWKILEDLMDQIDLVLTEVLMPC-LS-GIGLLRKIMNHKTCKNIPVIMMSSHDSMS--IVFKCLSKGAVYFLVKPIRK 85 (162)
Q Consensus 10 ~eal~~l~~~~~~~DlvllD~~mp~-~~-g~~~~~~ir~~~~~~~~piI~lt~~~~~~--~~~~a~~~Ga~~~l~KP~~~ 85 (162)
++..+...+ ..+|+|.+...+.. +. .-++++.|++.. +..|++.+....+ ......+ |+++|+.--.+.
T Consensus 550 ee~v~aa~e--~~adiv~lSsl~~~~~~~~~~v~~~Lk~aG----~~~V~vgG~P~~d~~~~~~~~~-G~D~~~~~g~~~ 622 (637)
T 1req_B 550 AEIVEAFKK--SGAQVADLCSSAKVYAQQGLEVAKALKAAG----AKALYLSGAFKEFGDDAAEAEK-LIDGRLFMGMDV 622 (637)
T ss_dssp HHHHHHHHH--HTCSEEEEECCHHHHHHHHHHHHHHHHHTT----CSEEEEESCGGGGGGGHHHHHH-HCCCEECTTCCH
T ss_pred HHHHHHHHh--cCCCEEEEecccHHHHHHHHHHHHHHHhCC----CCeEEEeCCCCccchhhHHHHh-ccceEecCCcCH
Confidence 777777777 68999998876542 22 245677787754 2345566643221 1334445 999999888888
Q ss_pred HHHHHHHHHH
Q 044790 86 NELQNLWQHV 95 (162)
Q Consensus 86 ~~L~~~i~~~ 95 (162)
.+++..+...
T Consensus 623 ~~~l~~l~~~ 632 (637)
T 1req_B 623 VDTLSSTLDI 632 (637)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777776554
No 328
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron}
Probab=49.89 E-value=36 Score=23.19 Aligned_cols=40 Identities=10% Similarity=0.112 Sum_probs=25.9
Q ss_pred CCccEEEEcCCCCCC--CH-------HHHHHHHHccCCCCCCcEEEEecCC
Q 044790 21 DQIDLVLTEVLMPCL--SG-------IGLLRKIMNHKTCKNIPVIMMSSHD 62 (162)
Q Consensus 21 ~~~DlvllD~~mp~~--~g-------~~~~~~ir~~~~~~~~piI~lt~~~ 62 (162)
.+||+|++.+-.-+. .- -++++.+|+.. +..+||+++...
T Consensus 73 ~~pd~Vvi~~G~ND~~~~~~~~~~~l~~ii~~l~~~~--p~~~ii~~~~~P 121 (200)
T 4h08_A 73 TKFDVIHFNNGLHGFDYTEEEYDKSFPKLIKIIRKYA--PKAKLIWANTTP 121 (200)
T ss_dssp SCCSEEEECCCSSCTTSCHHHHHHHHHHHHHHHHHHC--TTCEEEEECCCC
T ss_pred CCCCeEEEEeeeCCCCCCHHHHHHHHHHHHHHHhhhC--CCccEEEeccCC
Confidence 689999996654432 11 22456667655 788888887643
No 329
>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*
Probab=49.80 E-value=86 Score=24.09 Aligned_cols=66 Identities=18% Similarity=0.107 Sum_probs=46.3
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCC------CCCCC--HHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcC-CceE
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVL------MPCLS--GIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKG-AVYF 78 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~------mp~~~--g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~G-a~~~ 78 (162)
+..+..+.+.+ ..+|.|-+-.. ++... -+++++.|++. ..+|||........+.+.++++.| +|..
T Consensus 230 ~~~~la~~L~~--~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~---~~iPVi~~GgI~s~e~a~~~L~~G~aD~V 304 (340)
T 3gr7_A 230 DYVPYAKRMKE--QGVDLVDVSSGAIVPARMNVYPGYQVPFAELIRRE---ADIPTGAVGLITSGWQAEEILQNGRADLV 304 (340)
T ss_dssp GHHHHHHHHHH--TTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHH---TTCCEEEESSCCCHHHHHHHHHTTSCSEE
T ss_pred HHHHHHHHHHH--cCCCEEEEecCCccCCCCCCCccccHHHHHHHHHH---cCCcEEeeCCCCCHHHHHHHHHCCCeeEE
Confidence 45566666777 67887776421 11122 36788899875 378999888878899999999999 6654
No 330
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*
Probab=49.78 E-value=38 Score=25.62 Aligned_cols=62 Identities=23% Similarity=0.193 Sum_probs=40.4
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCC--HH---HHHHHHHHH
Q 044790 21 DQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIR--KN---ELQNLWQHV 95 (162)
Q Consensus 21 ~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~--~~---~L~~~i~~~ 95 (162)
.++|+|++|+ +|. .|...+...+... + ...+.+.++-|.-.|+.|=|. -. +|+..+++.
T Consensus 139 ~~~DlVlsD~-apn-sG~~~~D~~rs~~------L--------L~~a~~~LkpG~G~FV~KVf~pyg~~~~~l~~~lk~~ 202 (277)
T 3evf_A 139 VKCDTLLCDI-GES-SSSSVTEGERTVR------V--------LDTVEKWLACGVDNFCVKVLAPYMPDVLEKLELLQRR 202 (277)
T ss_dssp CCCSEEEECC-CCC-CSCHHHHHHHHHH------H--------HHHHHHHHTTCCSEEEEEESCTTSHHHHHHHHHHHHH
T ss_pred CCccEEEecC-ccC-cCchHHHHHHHHH------H--------HHHHHHHhCCCCCeEEEEecCCCCccHHHHHHHHHHh
Confidence 5799999995 455 7776666665432 1 456677788775678889777 33 445555544
Q ss_pred HHh
Q 044790 96 WRK 98 (162)
Q Consensus 96 l~~ 98 (162)
...
T Consensus 203 F~~ 205 (277)
T 3evf_A 203 FGG 205 (277)
T ss_dssp HCC
T ss_pred cCC
Confidence 443
No 331
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=49.64 E-value=81 Score=28.10 Aligned_cols=60 Identities=13% Similarity=0.127 Sum_probs=45.2
Q ss_pred HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe------CCC-CHHHHHHHHHHHHHhc
Q 044790 38 IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV------KPI-RKNELQNLWQHVWRKC 99 (162)
Q Consensus 38 ~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~------KP~-~~~~L~~~i~~~l~~~ 99 (162)
+++++.+++.- +.+|||....-...+.+.+++..||+.+.. +|. -.+.+...|+.++...
T Consensus 775 ~~~v~~v~~~~--~~ipvi~~GGI~s~~da~~~l~~Ga~~v~vg~~~l~~~~~~~~~~~~~l~~~l~~~ 841 (1025)
T 1gte_A 775 LRAVTTIARAL--PGFPILATGGIDSAESGLQFLHSGASVLQVCSAVQNQDFTVIQDYCTGLKALLYLK 841 (1025)
T ss_dssp HHHHHHHHHHS--TTCCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHTSCTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHc--CCCCEEEecCcCCHHHHHHHHHcCCCEEEEeeccccCCccHHHHHHHHHHHHHHHc
Confidence 36778887653 579999999999999999999999998754 243 3466777777666643
No 332
>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*
Probab=49.52 E-value=34 Score=26.77 Aligned_cols=34 Identities=12% Similarity=0.247 Sum_probs=27.6
Q ss_pred HHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHHH
Q 044790 64 MSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVWR 97 (162)
Q Consensus 64 ~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 97 (162)
.+....|++.|..=++-||++.++..+.++..-+
T Consensus 84 ~~~a~~al~aGkhVl~EKPl~~~ea~~l~~~A~~ 117 (372)
T 4gmf_A 84 TQLARHFLARGVHVIQEHPLHPDDISSLQTLAQE 117 (372)
T ss_dssp HHHHHHHHHTTCEEEEESCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcEEEecCCCHHHHHHHHHHHHH
Confidence 4678899999999999999999888776654433
No 333
>2r7a_A Bacterial heme binding protein; periplasmic binding protein, heme transport, transport protein; HET: HEM; 2.05A {Shigella dysenteriae} PDB: 2rg7_A
Probab=48.85 E-value=43 Score=24.03 Aligned_cols=76 Identities=11% Similarity=0.075 Sum_probs=41.9
Q ss_pred HHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCC-CHHHHHHHHHcCCceEEeCCCCHHHHHHH
Q 044790 13 WKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHD-SMSIVFKCLSKGAVYFLVKPIRKNELQNL 91 (162)
Q Consensus 13 l~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~-~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~ 91 (162)
+|.+.. .+|||||..... ..-+..++|++ ..+|++++.... ..+...+.+.. .-..+-|+-..+++...
T Consensus 52 ~E~i~~--l~PDLIi~~~~~---~~~~~~~~L~~----~gipvv~~~~~~~~~~~~~~~i~~-lg~~~g~~~~A~~~~~~ 121 (256)
T 2r7a_A 52 SEGILS--LRPDSVITWQDA---GPQIVLDQLRA----QKVNVVTLPRVPATLEQMYANIRQ-LAKTLQVPEQGDALVTQ 121 (256)
T ss_dssp HHHHHT--TCCSEEEEETTC---SCHHHHHHHHH----TTCEEEEECCCSCCHHHHHHHHHH-HHHHTTCHHHHHHHHHH
T ss_pred HHHHHc--cCCCEEEEcCCC---CCHHHHHHHHH----cCCcEEEecCCCCCHHHHHHHHHH-HHHHhCCHHHHHHHHHH
Confidence 455555 689999986432 12356677765 357888885433 44444444332 01122345455667666
Q ss_pred HHHHHHh
Q 044790 92 WQHVWRK 98 (162)
Q Consensus 92 i~~~l~~ 98 (162)
++..+..
T Consensus 122 ~~~~~~~ 128 (256)
T 2r7a_A 122 INQRLER 128 (256)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665543
No 334
>1tzz_A Hypothetical protein L1841; structural genomics, mandelate racemase like fold, nysgxrc target T1523, PSI, protein structure initiative; 1.86A {Bradyrhizobium japonicum} SCOP: c.1.11.2 d.54.1.1 PDB: 2dw7_A* 2dw6_A*
Probab=48.61 E-value=68 Score=25.00 Aligned_cols=74 Identities=12% Similarity=-0.080 Sum_probs=48.8
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcC-----CceEEeCC
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKG-----AVYFLVKP 82 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~G-----a~~~l~KP 82 (162)
+..+|+++++.. ..+++..+.--++. +-++.+++|++. ..+||+.-=.........++++.| ++.+..||
T Consensus 222 ~~~~a~~~~~~l-~~~~i~~iEqP~~~-~d~~~~~~l~~~---~~iPIa~dE~~~~~~~~~~~i~~~~~~~~~d~v~ik~ 296 (392)
T 1tzz_A 222 NLETGIAYAKML-RDYPLFWYEEVGDP-LDYALQAALAEF---YPGPMATGENLFSHQDARNLLRYGGMRPDRDWLQFDC 296 (392)
T ss_dssp CHHHHHHHHHHH-TTSCCSEEECCSCT-TCHHHHHHHTTT---CCSCEEECTTCCSHHHHHHHHHHSCCCTTTCEECCCT
T ss_pred CHHHHHHHHHHH-HHcCCCeecCCCCh-hhHHHHHHHHhh---CCCCEEECCCCCCHHHHHHHHHcCCCccCCcEEEECc
Confidence 456777777664 45666666544443 347777888764 357877554455677888888887 67778888
Q ss_pred CCHH
Q 044790 83 IRKN 86 (162)
Q Consensus 83 ~~~~ 86 (162)
...-
T Consensus 297 ~~~G 300 (392)
T 1tzz_A 297 ALSY 300 (392)
T ss_dssp TTTT
T ss_pred cccC
Confidence 6543
No 335
>3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A*
Probab=48.56 E-value=1.1e+02 Score=25.18 Aligned_cols=91 Identities=8% Similarity=0.050 Sum_probs=60.9
Q ss_pred EEcCHHHHHHHHHhhCCC---ccEEEEcCCCCC---------CCHHHHHHHHHccC---CCCCCcEEEEecCCCHHHHHH
Q 044790 5 AVENGLQAWKILEDLMDQ---IDLVLTEVLMPC---------LSGIGLLRKIMNHK---TCKNIPVIMMSSHDSMSIVFK 69 (162)
Q Consensus 5 ~a~~~~eal~~l~~~~~~---~DlvllD~~mp~---------~~g~~~~~~ir~~~---~~~~~piI~lt~~~~~~~~~~ 69 (162)
.+++..|+.+..+. . +|.|.+.-..|- .-|++.+++|++.. ....+|++.+..- ..+.+.+
T Consensus 114 S~ht~eea~~A~~~---G~~~aDYv~~Gpvf~T~tK~~~~~~~~G~~~l~~i~~~~~~~~~~~iPvvAIGGI-~~~ni~~ 189 (540)
T 3nl6_A 114 SVGFPEEVDELSKM---GPDMVDYIGVGTLFPTLTKKNPKKAPMGTAGAIRVLDALERNNAHWCRTVGIGGL-HPDNIER 189 (540)
T ss_dssp EECSHHHHHHHHHT---CC--CCEEEESCCSCCCCCC----CCCHHHHHHHHHHHHHHTTCTTCEEEEESSC-CTTTHHH
T ss_pred ECCCHHHHHHHHHc---CCCCCCEEEEcCCCCCCCCCCcCCCCCCHHHHHHHHHHHHhhccCCCCEEEEcCC-CHHHHHH
Confidence 56788888876654 4 899998655432 24677777775531 1147999999886 4555677
Q ss_pred HHH--------cCCceEE-----eCCCCHHHHHHHHHHHHHhc
Q 044790 70 CLS--------KGAVYFL-----VKPIRKNELQNLWQHVWRKC 99 (162)
Q Consensus 70 a~~--------~Ga~~~l-----~KP~~~~~L~~~i~~~l~~~ 99 (162)
.+. .|++++- .+.-++.+-.+.++..+...
T Consensus 190 v~~~~~~~g~~~GadgvAVvsaI~~a~dp~~a~~~l~~~~~~~ 232 (540)
T 3nl6_A 190 VLYQCVSSNGKRSLDGICVVSDIIASLDAAKSTKILRGLIDKT 232 (540)
T ss_dssp HHHHCBCTTSSCBCSCEEESHHHHTCTTHHHHHHHHHHHHHCC
T ss_pred HHHhhcccccccCceEEEEeHHHhcCCCHHHHHHHHHHHHHhC
Confidence 776 6788764 45556777777777766653
No 336
>2gdq_A YITF; mandelate racemase/muconate lactonizing enzyme, TIM-barrel, octamer, structural genomics, PSI; 1.80A {Bacillus subtilis subsp} SCOP: c.1.11.2 d.54.1.1 PDB: 2gge_A
Probab=48.51 E-value=93 Score=24.12 Aligned_cols=78 Identities=12% Similarity=0.061 Sum_probs=52.0
Q ss_pred CHHHHHHHHHhhCCCc-cEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcC-CceEEeCCCCH
Q 044790 8 NGLQAWKILEDLMDQI-DLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKG-AVYFLVKPIRK 85 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~-DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~G-a~~~l~KP~~~ 85 (162)
+.++++++++.. .++ ++..+.--+|. +-++.+++|++. ..+||+.-=.........++++.| ++-+..|+...
T Consensus 196 ~~~~a~~~~~~l-~~~~~i~~iEqP~~~-~d~~~~~~l~~~---~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~ 270 (382)
T 2gdq_A 196 DAAAAFKWERYF-SEWTNIGWLEEPLPF-DQPQDYAMLRSR---LSVPVAGGENMKGPAQYVPLLSQRCLDIIQPDVMHV 270 (382)
T ss_dssp CHHHHHTTHHHH-TTCSCEEEEECCSCS-SCHHHHHHHHTT---CSSCEEECTTCCSHHHHHHHHHTTCCSEECCCTTTT
T ss_pred CHHHHHHHHHHH-hhccCCeEEECCCCc-ccHHHHHHHHhh---CCCCEEecCCcCCHHHHHHHHHcCCCCEEecCcccc
Confidence 456777777664 456 78777755554 347778888764 367877555555677888888877 56667788765
Q ss_pred HHHHH
Q 044790 86 NELQN 90 (162)
Q Consensus 86 ~~L~~ 90 (162)
--|.+
T Consensus 271 GGit~ 275 (382)
T 2gdq_A 271 NGIDE 275 (382)
T ss_dssp THHHH
T ss_pred CCHHH
Confidence 44443
No 337
>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2
Probab=48.34 E-value=67 Score=22.44 Aligned_cols=69 Identities=13% Similarity=0.105 Sum_probs=42.5
Q ss_pred CHHHHHHHHHhhCCCccE---EEEcCCC-CC-CCHHHHHHHHHccCCCCCCcEEEEec-CCCHHHHHHHHHcCCceEEeC
Q 044790 8 NGLQAWKILEDLMDQIDL---VLTEVLM-PC-LSGIGLLRKIMNHKTCKNIPVIMMSS-HDSMSIVFKCLSKGAVYFLVK 81 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~Dl---vllD~~m-p~-~~g~~~~~~ir~~~~~~~~piI~lt~-~~~~~~~~~a~~~Ga~~~l~K 81 (162)
+..++++.+.+ ...|. .++|-.. +. ..|+++++.|++.. ..|+.+-.- ++..+.+..+.+.|++....-
T Consensus 17 ~~~~~~~~~~~--~G~~~i~~~~~dg~~~~~~~~g~~~i~~i~~~~---~~~~~v~l~v~d~~~~i~~~~~~gad~v~vh 91 (220)
T 2fli_A 17 NFASELARIEE--TDAEYVHIDIMDGQFVPNISFGADVVASMRKHS---KLVFDCHLMVVDPERYVEAFAQAGADIMTIH 91 (220)
T ss_dssp GHHHHHHHHHH--TTCCEEEEEEEBSSSSSCBCBCHHHHHHHHTTC---CSEEEEEEESSSGGGGHHHHHHHTCSEEEEE
T ss_pred HHHHHHHHHHH--cCCCEEEEEeecCCCCCccccCHHHHHHHHHhC---CCCEEEEEeecCHHHHHHHHHHcCCCEEEEc
Confidence 45566777776 55554 4556432 22 45689999998742 345443322 333345788899999998663
No 338
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=48.15 E-value=58 Score=21.68 Aligned_cols=77 Identities=13% Similarity=0.096 Sum_probs=52.5
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHH
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNE 87 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~ 87 (162)
+..+..+++.. .|++|+=.. ...-|..+++.+. ..+|||+... ....+.+..|..+++. +.+.++
T Consensus 87 ~~~e~~~~~~~----adi~v~ps~-~e~~~~~~~Eama-----~G~PvI~~~~----~~~~e~i~~~~~g~~~-~~d~~~ 151 (177)
T 2f9f_A 87 SEEELIDLYSR----CKGLLCTAK-DEDFGLTPIEAMA-----SGKPVIAVNE----GGFKETVINEKTGYLV-NADVNE 151 (177)
T ss_dssp CHHHHHHHHHH----CSEEEECCS-SCCSCHHHHHHHH-----TTCCEEEESS----HHHHHHCCBTTTEEEE-CSCHHH
T ss_pred CHHHHHHHHHh----CCEEEeCCC-cCCCChHHHHHHH-----cCCcEEEeCC----CCHHHHhcCCCccEEe-CCCHHH
Confidence 34455566655 578876333 2334566777774 4788886432 3445556678889999 999999
Q ss_pred HHHHHHHHHHhc
Q 044790 88 LQNLWQHVWRKC 99 (162)
Q Consensus 88 L~~~i~~~l~~~ 99 (162)
|...|..++...
T Consensus 152 l~~~i~~l~~~~ 163 (177)
T 2f9f_A 152 IIDAMKKVSKNP 163 (177)
T ss_dssp HHHHHHHHHHCT
T ss_pred HHHHHHHHHhCH
Confidence 999999998654
No 339
>2r79_A Periplasmic binding protein; heme transport, transport prote; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=48.12 E-value=35 Score=25.05 Aligned_cols=74 Identities=16% Similarity=0.169 Sum_probs=40.6
Q ss_pred HHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHc-CCceEEeCCCCHHHHHHH
Q 044790 13 WKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSK-GAVYFLVKPIRKNELQNL 91 (162)
Q Consensus 13 l~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~-Ga~~~l~KP~~~~~L~~~ 91 (162)
+|.+.. .+|||||..... ..-+..++|++ ..+|++++......+...+.+.. | ..+-|+-..+++...
T Consensus 52 ~E~i~~--l~PDLIi~~~~~---~~~~~~~~L~~----~gipvv~~~~~~~~~~~~~~i~~lg--~~~g~~~~A~~l~~~ 120 (283)
T 2r79_A 52 AEGVLA--LRPDILIGTEEM---GPPPVLKQLEG----AGVRVETLSAKPDLEALESNLKKLG--DWLGVPQRAEAAELD 120 (283)
T ss_dssp HHHHHT--TCCSEEEECTTC---CCHHHHHHHHH----TTCCEEECCCCSSHHHHHHHHHHHH--HHHTCHHHHHHHHHH
T ss_pred HHHHHh--cCCCEEEEeCcc---CcHHHHHHHHH----cCCcEEEecCCCCHHHHHHHHHHHH--HHhCCHHHHHHHHHH
Confidence 355555 689999986432 12456677765 35788887543344444443331 1 122344455666666
Q ss_pred HHHHHH
Q 044790 92 WQHVWR 97 (162)
Q Consensus 92 i~~~l~ 97 (162)
++..+.
T Consensus 121 ~~~~~~ 126 (283)
T 2r79_A 121 YRQRLR 126 (283)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655543
No 340
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=47.72 E-value=74 Score=22.71 Aligned_cols=69 Identities=10% Similarity=0.025 Sum_probs=48.8
Q ss_pred cCHHHHHHHHHhhCCCccEEEEcC---C-CCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeC
Q 044790 7 ENGLQAWKILEDLMDQIDLVLTEV---L-MPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVK 81 (162)
Q Consensus 7 ~~~~eal~~l~~~~~~~DlvllD~---~-mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~K 81 (162)
.+..+..+.+.+ ...|.|-++. . -+...- ++++.|++. ..+|+++--.-.+++.+..+++.||+..+.=
T Consensus 32 ~d~~~~a~~~~~--~Gad~i~v~~~d~~~~~~~~~-~~i~~i~~~---~~ipv~v~ggI~~~~~~~~~l~~Gad~V~lg 104 (244)
T 1vzw_A 32 GSPLEAALAWQR--SGAEWLHLVDLDAAFGTGDNR-ALIAEVAQA---MDIKVELSGGIRDDDTLAAALATGCTRVNLG 104 (244)
T ss_dssp CCHHHHHHHHHH--TTCSEEEEEEHHHHHTSCCCH-HHHHHHHHH---CSSEEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred CCHHHHHHHHHH--cCCCEEEEecCchhhcCCChH-HHHHHHHHh---cCCcEEEECCcCCHHHHHHHHHcCCCEEEEC
Confidence 366677777777 6778776643 1 123333 778888765 3789988766677888999999999987754
No 341
>1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A {Escherichia coli} SCOP: c.1.10.2
Probab=47.69 E-value=88 Score=23.63 Aligned_cols=85 Identities=14% Similarity=0.188 Sum_probs=57.2
Q ss_pred EcCHHHHHHHHHhhCCCccEEEEcCCC--------CCCCHHHHHHHHHccCCCCCCcEEEEecCC-CHHHHHHHHHcCCc
Q 044790 6 VENGLQAWKILEDLMDQIDLVLTEVLM--------PCLSGIGLLRKIMNHKTCKNIPVIMMSSHD-SMSIVFKCLSKGAV 76 (162)
Q Consensus 6 a~~~~eal~~l~~~~~~~DlvllD~~m--------p~~~g~~~~~~ir~~~~~~~~piI~lt~~~-~~~~~~~a~~~Ga~ 76 (162)
.+++++|.+++++ ..+|.+=+-+-- |..+ ++.++.|++.- .+|+++=.+.. ..+.+.+|.+.|+.
T Consensus 154 ~T~Peea~~Fv~~--TgvD~LAvaiGt~HG~Y~~~p~Ld-~~~L~~I~~~~---~vpLVlHGgSG~~~e~i~~ai~~Gv~ 227 (286)
T 1gvf_A 154 LTDPQEAKRFVEL--TGVDSLAVAIGTAHGLYSKTPKID-FQRLAEIREVV---DVPLVLHGASDVPDEFVRRTIELGVT 227 (286)
T ss_dssp SCCHHHHHHHHHH--HCCSEEEECSSCCSSCCSSCCCCC-HHHHHHHHHHC---CSCEEECCCTTCCHHHHHHHHHTTEE
T ss_pred CCCHHHHHHHHHH--HCCCEEEeecCccccCcCCCCccC-HHHHHHHHHhc---CCCEEEECCCCCCHHHHHHHHHCCCe
Confidence 4789999999998 789988776632 3333 78899998753 68888776654 56668889999976
Q ss_pred eEEeCCCCHHHHHHHHHHHH
Q 044790 77 YFLVKPIRKNELQNLWQHVW 96 (162)
Q Consensus 77 ~~l~KP~~~~~L~~~i~~~l 96 (162)
.+=.-..-...+...+++.+
T Consensus 228 KiNi~Tdl~~a~~~~~r~~~ 247 (286)
T 1gvf_A 228 KVNVATELKIAFAGAVKAWF 247 (286)
T ss_dssp EEEECHHHHHHHHHHHHHHH
T ss_pred EEEEChHHHHHHHHHHHHHH
Confidence 65332222233344444444
No 342
>2poz_A Putative dehydratase; octamer, structural genomics, P protein structure initiative, NEW YORK SGX research center structural genomics, nysgxrc; 2.04A {Mesorhizobium loti}
Probab=47.57 E-value=65 Score=25.09 Aligned_cols=76 Identities=11% Similarity=0.021 Sum_probs=49.1
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcC-CceEEeCCCCHH
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKG-AVYFLVKPIRKN 86 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~G-a~~~l~KP~~~~ 86 (162)
+..+++++++.. .++++..+.--+|. +-++.+++|++. ..+||+.-=.........++++.| ++-+..|+...-
T Consensus 211 ~~~~a~~~~~~l-~~~~i~~iE~P~~~-~~~~~~~~l~~~---~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~G 285 (392)
T 2poz_A 211 TTDETIRFCRKI-GELDICFVEEPCDP-FDNGALKVISEQ---IPLPIAVGERVYTRFGFRKIFELQACGIIQPDIGTAG 285 (392)
T ss_dssp CHHHHHHHHHHH-GGGCEEEEECCSCT-TCHHHHHHHHHH---CSSCEEECTTCCHHHHHHHHHTTTCCSEECCCTTTSS
T ss_pred CHHHHHHHHHHH-HhcCCCEEECCCCc-ccHHHHHHHHhh---CCCCEEecCCcCCHHHHHHHHHcCCCCEEecCccccC
Confidence 456777777664 45778777655553 336777888765 357877544444567788888887 555567886543
Q ss_pred HH
Q 044790 87 EL 88 (162)
Q Consensus 87 ~L 88 (162)
-|
T Consensus 286 Gi 287 (392)
T 2poz_A 286 GL 287 (392)
T ss_dssp CH
T ss_pred CH
Confidence 33
No 343
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}
Probab=47.56 E-value=32 Score=23.96 Aligned_cols=78 Identities=10% Similarity=0.009 Sum_probs=43.1
Q ss_pred CHHHHHHHHHhhCCCccEE-EEcCCC---CCCCHH-HHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEE---
Q 044790 8 NGLQAWKILEDLMDQIDLV-LTEVLM---PCLSGI-GLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFL--- 79 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~Dlv-llD~~m---p~~~g~-~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l--- 79 (162)
+..+.++.+.+ ...|+| +.=... ++.+.. +.+++++.. .+|+++.-+- ..+...++++.|++.++
T Consensus 115 ~p~~~~~~~~~--~g~d~v~~~~~~~~~~~g~~~~~~~i~~~~~~----~~pi~v~GGI-~~~~~~~~~~aGad~vvvGs 187 (207)
T 3ajx_A 115 DKATRAQEVRA--LGAKFVEMHAGLDEQAKPGFDLNGLLAAGEKA----RVPFSVAGGV-KVATIPAVQKAGAEVAVAGG 187 (207)
T ss_dssp SHHHHHHHHHH--TTCSEEEEECCHHHHTSTTCCTHHHHHHHHHH----TSCEEEESSC-CGGGHHHHHHTTCSEEEESH
T ss_pred ChHHHHHHHHH--hCCCEEEEEecccccccCCCchHHHHHHhhCC----CCCEEEECCc-CHHHHHHHHHcCCCEEEEee
Confidence 55564455555 457887 531111 222222 444444431 5677766554 47788899999999885
Q ss_pred --eCCCCHHHHHHHH
Q 044790 80 --VKPIRKNELQNLW 92 (162)
Q Consensus 80 --~KP~~~~~L~~~i 92 (162)
.+.-++.+-.+.+
T Consensus 188 aI~~~~dp~~~~~~~ 202 (207)
T 3ajx_A 188 AIYGAADPAAAAKEL 202 (207)
T ss_dssp HHHTSSSHHHHHHHH
T ss_pred eccCCCCHHHHHHHH
Confidence 3444444444443
No 344
>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} SCOP: c.1.2.3 PDB: 3exs_A* 3ext_A
Probab=47.40 E-value=15 Score=26.54 Aligned_cols=85 Identities=11% Similarity=0.023 Sum_probs=50.0
Q ss_pred cCHHHHHHHHHhhCCCccEEEEcCCCCC--CCHHHHHHHHHccCCCCCCcEEE-EecCCCHHH-HHHHHHcCCceEEeCC
Q 044790 7 ENGLQAWKILEDLMDQIDLVLTEVLMPC--LSGIGLLRKIMNHKTCKNIPVIM-MSSHDSMSI-VFKCLSKGAVYFLVKP 82 (162)
Q Consensus 7 ~~~~eal~~l~~~~~~~DlvllD~~mp~--~~g~~~~~~ir~~~~~~~~piI~-lt~~~~~~~-~~~a~~~Ga~~~l~KP 82 (162)
.+..++++++++ ..+.+..+.+.++- ..|.++++.|++.. ++.+|++ +=-++.+.. ...+.++|++-+..-.
T Consensus 15 ~~~~~a~~~~~~--~~~~~~~ikvg~~lf~~~G~~~v~~l~~~~--p~~~iflDlKl~Dip~t~~~~~~~~Gad~vtVH~ 90 (221)
T 3exr_A 15 SNLKGAITAAVS--VGNEVDVIEAGTVCLLQVGSELVEVLRSLF--PDKIIVADTKCADAGGTVAKNNAVRGADWMTCIC 90 (221)
T ss_dssp SSHHHHHHHHHH--HGGGCSEEEECHHHHHHHCTHHHHHHHHHC--TTSEEEEEEEECSCHHHHHHHHHTTTCSEEEEET
T ss_pred CCHHHHHHHHHh--hCCCceEEEECHHHHHhcCHHHHHHHHHhC--CCCcEEEEEEeeccHHHHHHHHHHcCCCEEEEec
Confidence 467889999887 55556666665543 24567788887753 3445443 111133333 4446678998877766
Q ss_pred CCHHH-HHHHHHHH
Q 044790 83 IRKNE-LQNLWQHV 95 (162)
Q Consensus 83 ~~~~~-L~~~i~~~ 95 (162)
..-.+ +...++.+
T Consensus 91 ~~g~~~l~~a~~~~ 104 (221)
T 3exr_A 91 SATIPTMKAARKAI 104 (221)
T ss_dssp TSCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH
Confidence 64444 44444433
No 345
>1n2z_A Vitamin B12 transport protein BTUF; HET: CNC PG4; 2.00A {Escherichia coli} SCOP: c.92.2.2 PDB: 2qi9_F* 4dbl_E 1n4a_A* 1n4d_A
Probab=47.36 E-value=31 Score=24.64 Aligned_cols=74 Identities=11% Similarity=0.088 Sum_probs=41.2
Q ss_pred HHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHH-cCCceEEeCCCCHHHHHHH
Q 044790 13 WKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLS-KGAVYFLVKPIRKNELQNL 91 (162)
Q Consensus 13 l~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~-~Ga~~~l~KP~~~~~L~~~ 91 (162)
+|.+.. .+|||||.... ...-+..++|++. .+|++++.. ...+...+.+. .| ..+-|+-..+++...
T Consensus 50 ~E~i~~--l~PDLIi~~~~---~~~~~~~~~L~~~----gipvv~~~~-~~~~~~~~~i~~lg--~~lg~~~~A~~~~~~ 117 (245)
T 1n2z_A 50 LERIVA--LKPDLVIAWRG---GNAERQVDQLASL----GIKVMWVDA-TSIEQIANALRQLA--PWSPQPDKAEQAAQS 117 (245)
T ss_dssp HHHHHH--TCCSEEEECTT---TSCHHHHHHHHHH----TCCEEECCC-CSHHHHHHHHHHHG--GGCSCHHHHHHHHHH
T ss_pred HHHHhc--cCCCEEEEeCC---CCcHHHHHHHHHC----CCcEEEeCC-CCHHHHHHHHHHHH--HHhCCHHHHHHHHHH
Confidence 355555 68999998421 1113566777653 578887754 33344444443 22 223455556677776
Q ss_pred HHHHHHh
Q 044790 92 WQHVWRK 98 (162)
Q Consensus 92 i~~~l~~ 98 (162)
++..+..
T Consensus 118 ~~~~~~~ 124 (245)
T 1n2z_A 118 LLDQYAQ 124 (245)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665543
No 346
>1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1
Probab=47.35 E-value=59 Score=23.34 Aligned_cols=63 Identities=17% Similarity=0.148 Sum_probs=45.1
Q ss_pred HHHHHHHhhCCCccEEEEcCCC-CCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCc
Q 044790 11 QAWKILEDLMDQIDLVLTEVLM-PCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAV 76 (162)
Q Consensus 11 eal~~l~~~~~~~DlvllD~~m-p~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~ 76 (162)
++.+.+.+ ...|.|-....+ ++.-.++.++.+++.- ...+||+....-...+.+.+.+.+||+
T Consensus 136 ~~a~~a~e--aGad~I~tstg~~~gga~~~~i~~v~~~v-~~~ipVia~GGI~t~~da~~~l~aGA~ 199 (225)
T 1mzh_A 136 KAVEICIE--AGADFIKTSTGFAPRGTTLEEVRLIKSSA-KGRIKVKASGGIRDLETAISMIEAGAD 199 (225)
T ss_dssp HHHHHHHH--HTCSEEECCCSCSSSCCCHHHHHHHHHHH-TTSSEEEEESSCCSHHHHHHHHHTTCS
T ss_pred HHHHHHHH--hCCCEEEECCCCCCCCCCHHHHHHHHHHh-CCCCcEEEECCCCCHHHHHHHHHhCch
Confidence 44455555 578999666533 2333467788887642 147999999998899999999999998
No 347
>3no3_A Glycerophosphodiester phosphodiesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.89A {Parabacteroides distasonis} SCOP: c.1.18.0
Probab=47.09 E-value=68 Score=23.10 Aligned_cols=40 Identities=10% Similarity=0.169 Sum_probs=30.4
Q ss_pred CCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHH
Q 044790 51 KNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQ 93 (162)
Q Consensus 51 ~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~ 93 (162)
..++|.+.|- ++...+.++++.|++++++- .++.+...++
T Consensus 195 ~G~~v~~WTV-n~~~~~~~l~~~GVdgIiTD--~P~~~~~~l~ 234 (238)
T 3no3_A 195 LGMTSNVWTV-DDPKLMEEMIDMGVDFITTD--LPEETQKILH 234 (238)
T ss_dssp TTCEEEEECC-CSHHHHHHHHHHTCSEEEES--CHHHHHHHHH
T ss_pred CCCEEEEECC-CCHHHHHHHHHcCCCEEECC--CHHHHHHHHH
Confidence 4678888875 57788899999999999984 4566655554
No 348
>3qvq_A Phosphodiesterase OLEI02445; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase, hydrolase; HET: MSE G3P; 1.60A {Oleispira antarctica}
Probab=46.83 E-value=80 Score=22.87 Aligned_cols=49 Identities=12% Similarity=0.170 Sum_probs=35.3
Q ss_pred HHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHH
Q 044790 39 GLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQH 94 (162)
Q Consensus 39 ~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~ 94 (162)
++++.+++ ..++|.+.|- .+++.+.++++.|++++++- .++.+...+.+
T Consensus 201 ~~v~~~~~----~G~~v~~WTv-n~~~~~~~l~~~GVdgIiTD--~P~~~~~~l~~ 249 (252)
T 3qvq_A 201 QQVSDIKA----AGYKVLAFTI-NDESLALKLYNQGLDAVFSD--YPQKIQSAIDS 249 (252)
T ss_dssp HHHHHHHH----TTCEEEEECC-CCHHHHHHHHHTTCCEEEES--SHHHHHHHHHH
T ss_pred HHHHHHHH----CCCEEEEEcC-CCHHHHHHHHHcCCCEEEeC--CHHHHHHHHHH
Confidence 45566654 4678888875 67888899999999999975 35666555543
No 349
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=46.36 E-value=68 Score=23.63 Aligned_cols=74 Identities=15% Similarity=0.124 Sum_probs=42.7
Q ss_pred CccEEEEcCCCCCCCH-------HHHHHHHHccC--CCCCCcEEEEecCCCHHHHHHHHHcCCceEEe-----CCCCHHH
Q 044790 22 QIDLVLTEVLMPCLSG-------IGLLRKIMNHK--TCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV-----KPIRKNE 87 (162)
Q Consensus 22 ~~DlvllD~~mp~~~g-------~~~~~~ir~~~--~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~-----KP~~~~~ 87 (162)
.+|+|++=...|+..| ++-++++|+.. ....++|. +.+.-..+.+..+.++||+-++. +--++.+
T Consensus 156 ~vD~VlvMsV~PGfgGQ~fi~~~l~KI~~lr~~~~~~~~~~~I~-VDGGI~~~ti~~~~~aGAD~~V~GSaIf~a~dp~~ 234 (246)
T 3inp_A 156 NIDRVLIMSVNPGFGGQKFIPAMLDKAKEISKWISSTDRDILLE-IDGGVNPYNIAEIAVCGVNAFVAGSAIFNSDSYKQ 234 (246)
T ss_dssp GCSEEEEECSCTTC--CCCCTTHHHHHHHHHHHHHHHTSCCEEE-EESSCCTTTHHHHHTTTCCEEEESHHHHTSSCHHH
T ss_pred cCCEEEEeeecCCCCCcccchHHHHHHHHHHHHHHhcCCCeeEE-EECCcCHHHHHHHHHcCCCEEEEehHHhCCCCHHH
Confidence 3677766455677666 33345554421 01345554 55555677889999999999875 3335555
Q ss_pred HHHHHHHHH
Q 044790 88 LQNLWQHVW 96 (162)
Q Consensus 88 L~~~i~~~l 96 (162)
-...++..+
T Consensus 235 ~i~~l~~~i 243 (246)
T 3inp_A 235 TIDKMRDEL 243 (246)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555544
No 350
>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A*
Probab=45.97 E-value=58 Score=24.81 Aligned_cols=66 Identities=12% Similarity=-0.025 Sum_probs=42.5
Q ss_pred HHHHHHHHHhhCCCccEEEEcCCC-------CCCC---HHHHHHHHHccCCCCCCcEEEE-e-cCCCHHHHHHHHHcCCc
Q 044790 9 GLQAWKILEDLMDQIDLVLTEVLM-------PCLS---GIGLLRKIMNHKTCKNIPVIMM-S-SHDSMSIVFKCLSKGAV 76 (162)
Q Consensus 9 ~~eal~~l~~~~~~~DlvllD~~m-------p~~~---g~~~~~~ir~~~~~~~~piI~l-t-~~~~~~~~~~a~~~Ga~ 76 (162)
..++.+.++. ..+|.+.+++.+ +..+ -++.+++||+ . .+||++= . .....+....+.+.|++
T Consensus 134 ~~~~~~a~~~--~~~~a~~i~~n~~~~~~~~~~~~~~~~~~~i~~vr~-~---~~Pv~vK~v~~g~~~e~a~~~~~~G~d 207 (332)
T 1vcf_A 134 RDDLLRLVEM--LEADALAFHVNPLQEAVQRGDTDFRGLVERLAELLP-L---PFPVMVKEVGHGLSREAALALRDLPLA 207 (332)
T ss_dssp HHHHHHHHHH--HTCSEEEEECCHHHHHHTTSCCCCTTHHHHHHHHCS-C---SSCEEEECSSSCCCHHHHHHHTTSCCS
T ss_pred hHHHHHHHhh--cCCCceeeccchHHHHhcCCCccHHHHHHHHHHHHc-C---CCCEEEEecCCCCCHHHHHHHHHcCCC
Confidence 3455555554 346777777754 2222 3677888876 3 6788864 2 11356778888899999
Q ss_pred eEEe
Q 044790 77 YFLV 80 (162)
Q Consensus 77 ~~l~ 80 (162)
.+..
T Consensus 208 ~I~v 211 (332)
T 1vcf_A 208 AVDV 211 (332)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 8876
No 351
>3q94_A Fructose-bisphosphate aldolase, class II; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel; HET: 13P; 2.30A {Bacillus anthracis} SCOP: c.1.10.0
Probab=45.93 E-value=95 Score=23.49 Aligned_cols=86 Identities=14% Similarity=0.222 Sum_probs=57.2
Q ss_pred EcCHHHHHHHHHhhCCCccEEEEcCCC--------CCCCHHHHHHHHHccCCCCCCcEEEEecCC-CHHHHHHHHHcCCc
Q 044790 6 VENGLQAWKILEDLMDQIDLVLTEVLM--------PCLSGIGLLRKIMNHKTCKNIPVIMMSSHD-SMSIVFKCLSKGAV 76 (162)
Q Consensus 6 a~~~~eal~~l~~~~~~~DlvllD~~m--------p~~~g~~~~~~ir~~~~~~~~piI~lt~~~-~~~~~~~a~~~Ga~ 76 (162)
.+++++|.+++++ ..+|.+=+-+-- |..+ ++.++.|++.- .+|+++=.+.. ..+.+.+|...|+.
T Consensus 158 yT~Peea~~Fv~~--TgvD~LAvaiGt~HG~Y~~~p~Ld-~~~L~~I~~~v---~vpLVlHGgSG~~~e~i~~ai~~Gv~ 231 (288)
T 3q94_A 158 YADPAECKHLVEA--TGIDCLAPALGSVHGPYKGEPNLG-FAEMEQVRDFT---GVPLVLHGGTGIPTADIEKAISLGTS 231 (288)
T ss_dssp CCCHHHHHHHHHH--HCCSEEEECSSCBSSCCSSSCCCC-HHHHHHHHHHH---CSCEEECCCTTCCHHHHHHHHHTTEE
T ss_pred CCCHHHHHHHHHH--HCCCEEEEEcCcccCCcCCCCccC-HHHHHHHHHhc---CCCEEEeCCCCCCHHHHHHHHHcCCe
Confidence 5789999999998 788988776631 3333 78899998754 58888765543 66678889999976
Q ss_pred eEEeCCCCHHHHHHHHHHHHH
Q 044790 77 YFLVKPIRKNELQNLWQHVWR 97 (162)
Q Consensus 77 ~~l~KP~~~~~L~~~i~~~l~ 97 (162)
.+=.-..-...+...+++++.
T Consensus 232 KiNi~Tdl~~a~~~~~r~~~~ 252 (288)
T 3q94_A 232 KINVNTENQIEFTKAVREVLN 252 (288)
T ss_dssp EEEECHHHHHHHHHHHHHHHH
T ss_pred EEEEChHHHHHHHHHHHHHHH
Confidence 653322222334444444443
No 352
>3jva_A Dipeptide epimerase; enolase superfamily, isomerase; 1.70A {Enterococcus faecalis V583} PDB: 3jw7_A* 3jzu_A* 3k1g_A* 3kum_A*
Probab=45.49 E-value=1e+02 Score=23.66 Aligned_cols=73 Identities=15% Similarity=0.127 Sum_probs=49.2
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcC-CceEEeCCCCH
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKG-AVYFLVKPIRK 85 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~G-a~~~l~KP~~~ 85 (162)
+..+|+++++.. ..+++..++--+|.. -++.+++|++. ..+||+.==.-.......++++.| ++-+..|+...
T Consensus 195 ~~~~a~~~~~~L-~~~~i~~iEqP~~~~-d~~~~~~l~~~---~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k~~~~ 268 (354)
T 3jva_A 195 TPKDAVKAIQAL-ADYQIELVEQPVKRR-DLEGLKYVTSQ---VNTTIMADESCFDAQDALELVKKGTVDVINIKLMKC 268 (354)
T ss_dssp CHHHHHHHHHHT-TTSCEEEEECCSCTT-CHHHHHHHHHH---CSSEEEESTTCCSHHHHHHHHHHTCCSEEEECHHHH
T ss_pred CHHHHHHHHHHH-HhcCCCEEECCCChh-hHHHHHHHHHh---CCCCEEEcCCcCCHHHHHHHHHcCCCCEEEECchhc
Confidence 567888888774 567888887555433 36777888765 357777544445667777888765 66677887543
No 353
>3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A*
Probab=45.48 E-value=72 Score=24.64 Aligned_cols=67 Identities=10% Similarity=0.007 Sum_probs=42.5
Q ss_pred HHHHHHHHHhhC-CCccEEEEcCCC------CCCC--HHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEE
Q 044790 9 GLQAWKILEDLM-DQIDLVLTEVLM------PCLS--GIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFL 79 (162)
Q Consensus 9 ~~eal~~l~~~~-~~~DlvllD~~m------p~~~--g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l 79 (162)
.++++++++... . +|.|-+.... +... -+++++.||+.- .+|||........+.+.++++.|.-|++
T Consensus 229 ~~~~~~~a~~l~~~-vd~i~vs~g~~~~~~~~~~~~~~~~~~~~ir~~~---~iPVi~~Ggi~t~e~Ae~~l~~G~aD~V 304 (343)
T 3kru_A 229 IDMMVEYINMIKDK-VDLIDVSSGGLLNVDINLYPGYQVKYAETIKKRC---NIKTSAVGLITTQELAEEILSNERADLV 304 (343)
T ss_dssp HHHHHHHHHHHTTT-CSEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHH---TCEEEEESSCCCHHHHHHHHHTTSCSEE
T ss_pred HHHHHHHHHHhhcc-ccEEeccCCceEeeeecccCceeehHHHHHHHhc---CcccceeeeeeHHHHHHHHHhchhhHHH
Confidence 344444443321 4 8877764211 1112 367888888753 6899988887789999999999844443
No 354
>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4
Probab=45.33 E-value=53 Score=24.19 Aligned_cols=73 Identities=7% Similarity=-0.129 Sum_probs=44.9
Q ss_pred EEEcCHHHHHHHHHhhCCCccEEEEcCCCC-C-CCHHHHHHHHHcc-CC-CCCCcEEEEecCCCHHHHHHHHHcCCceEE
Q 044790 4 IAVENGLQAWKILEDLMDQIDLVLTEVLMP-C-LSGIGLLRKIMNH-KT-CKNIPVIMMSSHDSMSIVFKCLSKGAVYFL 79 (162)
Q Consensus 4 ~~a~~~~eal~~l~~~~~~~DlvllD~~mp-~-~~g~~~~~~ir~~-~~-~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l 79 (162)
+.+++..|+...+.. ..|+|=+..... . ...++.+..|... +. ...+|+|..++-...+.+.++.+ |+++++
T Consensus 159 vev~~~~E~~~a~~~---gad~IGvn~~~l~~~~~dl~~~~~L~~~i~~~~~~~~vIAegGI~s~~dv~~l~~-Ga~gvl 234 (254)
T 1vc4_A 159 VEVHTERELEIALEA---GAEVLGINNRDLATLHINLETAPRLGRLARKRGFGGVLVAESGYSRKEELKALEG-LFDAVL 234 (254)
T ss_dssp EEECSHHHHHHHHHH---TCSEEEEESBCTTTCCBCTTHHHHHHHHHHHTTCCSEEEEESCCCSHHHHHTTTT-TCSEEE
T ss_pred EEECCHHHHHHHHHc---CCCEEEEccccCcCCCCCHHHHHHHHHhCccccCCCeEEEEcCCCCHHHHHHHHc-CCCEEE
Confidence 467888887666554 457775532110 0 1113334444322 10 01678998888888999999999 999997
Q ss_pred e
Q 044790 80 V 80 (162)
Q Consensus 80 ~ 80 (162)
.
T Consensus 235 V 235 (254)
T 1vc4_A 235 I 235 (254)
T ss_dssp E
T ss_pred E
Confidence 5
No 355
>3mmz_A Putative HAD family hydrolase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.84A {Streptomyces avermitilis}
Probab=45.32 E-value=67 Score=21.59 Aligned_cols=51 Identities=10% Similarity=0.131 Sum_probs=35.3
Q ss_pred HHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHH
Q 044790 40 LLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHV 95 (162)
Q Consensus 40 ~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~ 95 (162)
+++.+++ ..+++.++|+.........+-..|++ |+....+..+.+..+.+.
T Consensus 47 ~l~~L~~----~g~~~~i~T~~~~~~~~~~~~~lgi~-~~~~~~~k~~~l~~~~~~ 97 (176)
T 3mmz_A 47 GIAALRK----SGLTMLILSTEQNPVVAARARKLKIP-VLHGIDRKDLALKQWCEE 97 (176)
T ss_dssp HHHHHHH----TTCEEEEEESSCCHHHHHHHHHHTCC-EEESCSCHHHHHHHHHHH
T ss_pred HHHHHHH----CCCeEEEEECcChHHHHHHHHHcCCe-eEeCCCChHHHHHHHHHH
Confidence 3677776 46899999988777666666678888 877665555555554443
No 356
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=45.10 E-value=52 Score=22.51 Aligned_cols=73 Identities=11% Similarity=0.289 Sum_probs=40.8
Q ss_pred CccEEEEcCC-CCCCCHHH-HHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHHHh
Q 044790 22 QIDLVLTEVL-MPCLSGIG-LLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVWRK 98 (162)
Q Consensus 22 ~~DlvllD~~-mp~~~g~~-~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 98 (162)
.+.+||+|-. .-.....+ +++.+.... ..+.+|+.+. .. ......+..-+.-+-.+|++.+++...+...+..
T Consensus 126 ~~~vlviDe~~~l~~~~~~~l~~~l~~~~--~~~~~i~~t~-~~-~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~ 200 (250)
T 1njg_A 126 RFKVYLIDEVHMLSRHSFNALLKTLEEPP--EHVKFLLATT-DP-QKLPVTILSRCLQFHLKALDVEQIRHQLEHILNE 200 (250)
T ss_dssp SSEEEEEETGGGSCHHHHHHHHHHHHSCC--TTEEEEEEES-CG-GGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred CceEEEEECcccccHHHHHHHHHHHhcCC--CceEEEEEeC-Ch-HhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHh
Confidence 3578888742 11112222 344444322 3444554443 32 2233344444667788999999999999887765
No 357
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=44.85 E-value=51 Score=20.11 Aligned_cols=51 Identities=16% Similarity=0.212 Sum_probs=38.9
Q ss_pred CCCcEEEEecCCCHHH----HHHHHHcCCceEEeCCCCHHHHHHHHHHHHHhccC
Q 044790 51 KNIPVIMMSSHDSMSI----VFKCLSKGAVYFLVKPIRKNELQNLWQHVWRKCHS 101 (162)
Q Consensus 51 ~~~piI~lt~~~~~~~----~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~~~~ 101 (162)
...|++++........ ..+|.+.|+.--+.|.-++++|..+++.++.....
T Consensus 50 ngkplvvfvngasqndvnefqneakkegvsydvlkstdpeeltqrvreflktags 104 (112)
T 2lnd_A 50 NGKPLVVFVNGASQNDVNEFQNEAKKEGVSYDVLKSTDPEELTQRVREFLKTAGS 104 (112)
T ss_dssp CCSCEEEEECSCCHHHHHHHHHHHHHHTCEEEEEECCCHHHHHHHHHHHHHHTTS
T ss_pred cCCeEEEEecCcccccHHHHHHHHHhcCcchhhhccCCHHHHHHHHHHHHHhccc
Confidence 4567777776555443 34566789988899999999999999999886543
No 358
>3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A*
Probab=44.51 E-value=47 Score=26.62 Aligned_cols=61 Identities=15% Similarity=0.126 Sum_probs=43.9
Q ss_pred HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe------C-CCCHHHHHHHHHHHHHhc
Q 044790 38 IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV------K-PIRKNELQNLWQHVWRKC 99 (162)
Q Consensus 38 ~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~------K-P~~~~~L~~~i~~~l~~~ 99 (162)
+++++++++.- ...+|||....-...+.+.+++.+||+.... . |.-..++..-|...+...
T Consensus 332 l~~I~~v~~~v-~~~iPIIg~GGI~s~eDa~e~l~aGAd~VqIgra~l~~GP~~~~~i~~~L~~~l~~~ 399 (415)
T 3i65_A 332 TKFICEMYNYT-NKQIPIIASGGIFSGLDALEKIEAGASVCQLYSCLVFNGMKSAVQIKRELNHLLYQR 399 (415)
T ss_dssp HHHHHHHHHHT-TTCSCEEECSSCCSHHHHHHHHHHTEEEEEESHHHHHHGGGHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHh-CCCCCEEEECCCCCHHHHHHHHHcCCCEEEEcHHHHhcCHHHHHHHHHHHHHHHHHc
Confidence 36777777642 1379999999999999999999999987642 3 544556666666665554
No 359
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=44.40 E-value=1e+02 Score=24.20 Aligned_cols=79 Identities=10% Similarity=0.097 Sum_probs=50.2
Q ss_pred HHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHH
Q 044790 9 GLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNEL 88 (162)
Q Consensus 9 ~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L 88 (162)
..+..+++.......|++++=... ..-|..+++.+. ..+|||.... ....+.+..|..+++..|.+.++|
T Consensus 345 ~~~~~~~~~~a~~~~dv~v~pS~~-Eg~~~~~lEAma-----~G~PvI~s~~----~g~~e~v~~~~~g~l~~~~d~~~l 414 (499)
T 2r60_A 345 QQELAGCYAYLASKGSVFALTSFY-EPFGLAPVEAMA-----SGLPAVVTRN----GGPAEILDGGKYGVLVDPEDPEDI 414 (499)
T ss_dssp HHHHHHHHHHHHHTTCEEEECCSC-BCCCSHHHHHHH-----TTCCEEEESS----BHHHHHTGGGTSSEEECTTCHHHH
T ss_pred HHHHHHHHHhcCcCCCEEEECccc-CCCCcHHHHHHH-----cCCCEEEecC----CCHHHHhcCCceEEEeCCCCHHHH
Confidence 345555555400011777764332 233456666664 4788886542 234555677888999999999999
Q ss_pred HHHHHHHHH
Q 044790 89 QNLWQHVWR 97 (162)
Q Consensus 89 ~~~i~~~l~ 97 (162)
...|..++.
T Consensus 415 a~~i~~ll~ 423 (499)
T 2r60_A 415 ARGLLKAFE 423 (499)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHHh
Confidence 999988764
No 360
>2ox4_A Putative mandelate racemase; enolase, dehydratase, structural genomics, protein structure initiative, PSI, nysgrc; 1.80A {Zymomonas mobilis}
Probab=44.12 E-value=71 Score=24.93 Aligned_cols=78 Identities=10% Similarity=0.032 Sum_probs=48.9
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcC-CceEEeCCCCHH
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKG-AVYFLVKPIRKN 86 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~G-a~~~l~KP~~~~ 86 (162)
+..+++++++.. .++++..+.--+|. +-++.+++|++. ..+||+.-=.........++++.| ++-+..|+...-
T Consensus 221 ~~~~ai~~~~~l-~~~~i~~iE~P~~~-~d~~~~~~l~~~---~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~G 295 (403)
T 2ox4_A 221 DLVSAIQFAKAI-EEFNIFFYEEINTP-LNPRLLKEAKKK---IDIPLASGERIYSRWGFLPFLEDRSIDVIQPDLGTCG 295 (403)
T ss_dssp CHHHHHHHHHHH-GGGCEEEEECCSCT-TSTHHHHHHHHT---CCSCEEECTTCCHHHHHHHHHHTTCCSEECCCHHHHT
T ss_pred CHHHHHHHHHHH-HhhCCCEEeCCCCh-hhHHHHHHHHHh---CCCCEEecCCcCCHHHHHHHHHcCCCCEEecCccccC
Confidence 457777777664 45778777655553 236667778764 357877544444567788888887 455566775443
Q ss_pred HHHH
Q 044790 87 ELQN 90 (162)
Q Consensus 87 ~L~~ 90 (162)
-|.+
T Consensus 296 Gite 299 (403)
T 2ox4_A 296 GFTE 299 (403)
T ss_dssp HHHH
T ss_pred CHHH
Confidence 3433
No 361
>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*
Probab=44.07 E-value=1e+02 Score=23.45 Aligned_cols=71 Identities=15% Similarity=0.092 Sum_probs=50.3
Q ss_pred EcCHHHHHHHHHhhCCCccEEEEcCCCCCC------------C--HHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHH
Q 044790 6 VENGLQAWKILEDLMDQIDLVLTEVLMPCL------------S--GIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCL 71 (162)
Q Consensus 6 a~~~~eal~~l~~~~~~~DlvllD~~mp~~------------~--g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~ 71 (162)
+.+.++|....+. ..|.|++... ++. . .++++.+++.. ..+|||.-..-....++.+++
T Consensus 157 v~s~e~A~~a~~a---Gad~Ivvs~h-gG~~~~~~~~~~~g~~g~~~~~l~~v~~~---~~ipVIa~GGI~~g~Dv~kal 229 (336)
T 1ypf_A 157 VGTPEAVRELENA---GADATKVGIG-PGKVCITKIKTGFGTGGWQLAALRWCAKA---ASKPIIADGGIRTNGDVAKSI 229 (336)
T ss_dssp ECSHHHHHHHHHH---TCSEEEECSS-CSTTCHHHHHHSCSSTTCHHHHHHHHHHT---CSSCEEEESCCCSTHHHHHHH
T ss_pred cCCHHHHHHHHHc---CCCEEEEecC-CCceeecccccCcCCchhHHHHHHHHHHH---cCCcEEEeCCCCCHHHHHHHH
Confidence 4567777666654 6888888422 211 1 36677777654 379999988888999999999
Q ss_pred HcCCceE-EeCCC
Q 044790 72 SKGAVYF-LVKPI 83 (162)
Q Consensus 72 ~~Ga~~~-l~KP~ 83 (162)
.+||+.. +-+++
T Consensus 230 alGAdaV~iGr~~ 242 (336)
T 1ypf_A 230 RFGATMVMIGSLF 242 (336)
T ss_dssp HTTCSEEEESGGG
T ss_pred HcCCCEEEeChhh
Confidence 9999987 44444
No 362
>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*
Probab=43.99 E-value=35 Score=26.15 Aligned_cols=62 Identities=16% Similarity=0.113 Sum_probs=40.5
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCC--HH---HHHHHHHHH
Q 044790 21 DQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIR--KN---ELQNLWQHV 95 (162)
Q Consensus 21 ~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~--~~---~L~~~i~~~ 95 (162)
.++|+|++|. .|. .|...+...+... + ...+...+.-|.-.|+.|=|. -. +|+..++..
T Consensus 146 ~~~DlVlsD~-APn-sG~~~~D~~rs~~----L----------L~~A~~~LkpG~G~FV~KvF~~yG~~~~~ll~~lk~~ 209 (300)
T 3eld_A 146 EPSDTLLCDI-GES-SSNPLVERDRTMK----V----------LENFERWKHVNTENFCVKVLAPYHPDVIEKLERLQLR 209 (300)
T ss_dssp CCCSEEEECC-CCC-CSSHHHHHHHHHH----H----------HHHHHHHCCTTCCEEEEEESSTTSHHHHHHHHHHHHH
T ss_pred CCcCEEeecC-cCC-CCCHHHHHHHHHH----H----------HHHHHHHhcCCCCcEEEEeccccCccHHHHHHHHHHh
Confidence 5799999995 555 8877777776543 1 455566666675679999777 33 445555544
Q ss_pred HHh
Q 044790 96 WRK 98 (162)
Q Consensus 96 l~~ 98 (162)
...
T Consensus 210 F~~ 212 (300)
T 3eld_A 210 FGG 212 (300)
T ss_dssp HCC
T ss_pred CCc
Confidence 443
No 363
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=43.87 E-value=59 Score=20.52 Aligned_cols=46 Identities=20% Similarity=0.273 Sum_probs=28.0
Q ss_pred HHHHHHHHHhhCCCccEEEEcCCCCCCCH--HHHHHHHHccCCCCCCcEEEEec
Q 044790 9 GLQAWKILEDLMDQIDLVLTEVLMPCLSG--IGLLRKIMNHKTCKNIPVIMMSS 60 (162)
Q Consensus 9 ~~eal~~l~~~~~~~DlvllD~~mp~~~g--~~~~~~ir~~~~~~~~piI~lt~ 60 (162)
..+.++..++ ..+|+|+|... .+.-. ..+.+.+-.. ..+||+++-.
T Consensus 91 ~~~I~~~a~~--~~~dliV~G~~-~~~~~~lgs~~~~vl~~---~~~pVlvv~~ 138 (141)
T 1jmv_A 91 GQVLSDAIEQ--YDVDLLVTGHH-QDFWSKLMSSTRQVMNT---IKIDMLVVPL 138 (141)
T ss_dssp HHHHHHHHHH--TTCCEEEEEEC-CCCHHHHHHHHHHHHTT---CCSEEEEEEC
T ss_pred HHHHHHHHHh--cCCCEEEEeCC-CchhhhhcchHHHHHhc---CCCCEEEeeC
Confidence 3444555566 78999999987 43211 1334444333 4699998864
No 364
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=43.28 E-value=99 Score=22.96 Aligned_cols=60 Identities=15% Similarity=0.156 Sum_probs=40.0
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHHHh
Q 044790 23 IDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVWRK 98 (162)
Q Consensus 23 ~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 98 (162)
.|++++.. |.-+++.+. ..+|||+...... ..+..+.| .+++..+ +.++|...|..++..
T Consensus 283 ad~~v~~s------g~~~lEA~a-----~G~Pvi~~~~~~~---~~e~v~~g-~g~~v~~-d~~~la~~i~~ll~~ 342 (375)
T 3beo_A 283 SYLMLTDS------GGVQEEAPS-----LGVPVLVLRDTTE---RPEGIEAG-TLKLAGT-DEETIFSLADELLSD 342 (375)
T ss_dssp CSEEEECC------HHHHHHHHH-----HTCCEEECSSCCS---CHHHHHTT-SEEECCS-CHHHHHHHHHHHHHC
T ss_pred CcEEEECC------CChHHHHHh-----cCCCEEEecCCCC---CceeecCC-ceEEcCC-CHHHHHHHHHHHHhC
Confidence 57776643 444556654 4689886632122 23346678 8898877 999999999998863
No 365
>4hn9_A Iron complex transport system substrate-binding P; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.85A {Eubacterium eligens}
Probab=42.85 E-value=40 Score=25.47 Aligned_cols=72 Identities=13% Similarity=0.130 Sum_probs=41.6
Q ss_pred HHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHH-cCCceEEeCCCCHHHHHHH
Q 044790 13 WKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLS-KGAVYFLVKPIRKNELQNL 91 (162)
Q Consensus 13 l~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~-~Ga~~~l~KP~~~~~L~~~ 91 (162)
+|.+.. .+|||||.... .-+..++|++ ..+|++++... ..+...+.+. .| ..+-|+-..+++...
T Consensus 109 ~E~i~a--l~PDLIi~~~~-----~~~~~~~L~~----~gipvv~~~~~-~~~~~~~~i~~lg--~~lg~e~~A~~li~~ 174 (335)
T 4hn9_A 109 TEACVA--ATPDVVFLPMK-----LKKTADTLES----LGIKAVVVNPE-DQSLLEECITLVG--KITNNAGRAEALNNS 174 (335)
T ss_dssp HHHHHH--TCCSEEEEEGG-----GHHHHHHHHH----TTCCEEEECCC-SHHHHHHHHHHHH--HHTTCHHHHHHHHHH
T ss_pred HHHHHh--cCCCEEEEeCc-----chhHHHHHHH----cCCCEEEEcCC-CHHHHHHHHHHHH--HHcCCHHHHHHHHHH
Confidence 355555 68999998643 2356777765 35899988643 3333333332 12 123345556677766
Q ss_pred HHHHHHh
Q 044790 92 WQHVWRK 98 (162)
Q Consensus 92 i~~~l~~ 98 (162)
++..+..
T Consensus 175 ~~~~~~~ 181 (335)
T 4hn9_A 175 IKTFLAD 181 (335)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665554
No 366
>3ij5_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; IDP022 hydrolase, lipopolysaccharide biosynthesis, magnesium, STRU genomics; 1.95A {Yersinia pestis}
Probab=42.70 E-value=86 Score=22.06 Aligned_cols=50 Identities=10% Similarity=0.051 Sum_probs=35.2
Q ss_pred HHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHH
Q 044790 40 LLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQ 93 (162)
Q Consensus 40 ~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~ 93 (162)
+++.+++ ..+++.++|+.........+-..|+..|+...-+..+.+..+.
T Consensus 84 ~L~~L~~----~G~~l~I~T~~~~~~~~~~l~~lgi~~~f~~~k~K~~~l~~~~ 133 (211)
T 3ij5_A 84 GIRCLIT----SDIDVAIITGRRAKLLEDRANTLGITHLYQGQSDKLVAYHELL 133 (211)
T ss_dssp HHHHHHH----TTCEEEEECSSCCHHHHHHHHHHTCCEEECSCSSHHHHHHHHH
T ss_pred HHHHHHH----CCCEEEEEeCCCHHHHHHHHHHcCCchhhcccCChHHHHHHHH
Confidence 5677776 4689999999887776666777899998875544444444443
No 367
>3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A*
Probab=42.50 E-value=69 Score=24.83 Aligned_cols=63 Identities=11% Similarity=0.112 Sum_probs=41.6
Q ss_pred HHHHHHhhCCCccEEEEcCC-------CCCC--CHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEE
Q 044790 12 AWKILEDLMDQIDLVLTEVL-------MPCL--SGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFL 79 (162)
Q Consensus 12 al~~l~~~~~~~DlvllD~~-------mp~~--~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l 79 (162)
..+.+.+ ..+|.|-+-.. +|.. .-+++++.||+.- .+|||........+.+.++++.|.-|++
T Consensus 251 la~~L~~--~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~~~---~iPVi~~GgI~s~e~a~~~l~~G~aD~V 322 (363)
T 3l5l_A 251 LARRFKA--GGLDLLSVSVGFTIPDTNIPWGPAFMGPIAERVRREA---KLPVTSAWGFGTPQLAEAALQANQLDLV 322 (363)
T ss_dssp HHHHHHH--TTCCEEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHH---TCCEEECSSTTSHHHHHHHHHTTSCSEE
T ss_pred HHHHHHH--cCCCEEEEecCccccccccCCCcchhHHHHHHHHHHc---CCcEEEeCCCCCHHHHHHHHHCCCccEE
Confidence 3444555 56887765431 1111 2367888888753 6899888777789999999999944443
No 368
>2qq6_A Mandelate racemase/muconate lactonizing enzyme- like protein; enolase, Mg ION, PSI-2, NYSGXRC, structural genomics; 2.90A {Rubrobacter xylanophilus dsm 9941}
Probab=42.01 E-value=75 Score=24.93 Aligned_cols=80 Identities=11% Similarity=0.096 Sum_probs=49.3
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCC-ceEEeCCCCHH
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGA-VYFLVKPIRKN 86 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga-~~~l~KP~~~~ 86 (162)
+..+++++++.. .++++..+.--++. +-++.+++|++. ..+||+.-=.........++++.|+ +-+..|+...-
T Consensus 222 ~~~~a~~~~~~l-~~~~i~~iEeP~~~-~d~~~~~~l~~~---~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~G 296 (410)
T 2qq6_A 222 DIPSSIRFARAM-EPFGLLWLEEPTPP-ENLDALAEVRRS---TSTPICAGENVYTRFDFRELFAKRAVDYVMPDVAKCG 296 (410)
T ss_dssp CHHHHHHHHHHH-GGGCCSEEECCSCT-TCHHHHHHHHTT---CSSCEEECTTCCSHHHHHHHHHTTCCSEECCBHHHHT
T ss_pred CHHHHHHHHHHH-hhcCCCeEECCCCh-hhHHHHHHHHhh---CCCCEEeCCCcCCHHHHHHHHHcCCCCEEecCccccC
Confidence 456777776553 34666566544443 337777888764 3678776545557788888888875 55566775443
Q ss_pred HHHHHH
Q 044790 87 ELQNLW 92 (162)
Q Consensus 87 ~L~~~i 92 (162)
-|.+.+
T Consensus 297 Gite~~ 302 (410)
T 2qq6_A 297 GLAEAK 302 (410)
T ss_dssp HHHHHH
T ss_pred CHHHHH
Confidence 444443
No 369
>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A*
Probab=41.84 E-value=1.2e+02 Score=23.60 Aligned_cols=40 Identities=10% Similarity=-0.085 Sum_probs=30.8
Q ss_pred HHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 39 GLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 39 ~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
..+.+++... +.+|||.-..-.....+.+++.+||+.+..
T Consensus 256 ~~l~~v~~~~--~~ipvia~GGI~~~~d~~kal~lGA~~v~i 295 (368)
T 3vkj_A 256 ASIMEVRYSV--PDSFLVGSGGIRSGLDAAKAIALGADIAGM 295 (368)
T ss_dssp HHHHHHHHHS--TTCEEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHc--CCCcEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 3445555433 468999888888999999999999998844
No 370
>3l8h_A Putative haloacid dehalogenase-like hydrolase; HAD superfamily, GMHB, D-glycero-D-manno-heptose-1, 7-bispho phosphatase; HET: FX1; 1.68A {Bordetella bronchiseptica}
Probab=41.69 E-value=74 Score=21.01 Aligned_cols=23 Identities=4% Similarity=0.320 Sum_probs=17.8
Q ss_pred HHHHHHHHHccCCCCCCcEEEEecCCC
Q 044790 37 GIGLLRKIMNHKTCKNIPVIMMSSHDS 63 (162)
Q Consensus 37 g~~~~~~ir~~~~~~~~piI~lt~~~~ 63 (162)
-.++++.+++ ...++.++|....
T Consensus 32 ~~~~l~~L~~----~g~~~~i~Tn~~~ 54 (179)
T 3l8h_A 32 SLQAIARLTQ----ADWTVVLATNQSG 54 (179)
T ss_dssp HHHHHHHHHH----TTCEEEEEEECTT
T ss_pred HHHHHHHHHH----CCCEEEEEECCCc
Confidence 4678888876 4688999998764
No 371
>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*
Probab=41.47 E-value=37 Score=29.22 Aligned_cols=67 Identities=10% Similarity=0.031 Sum_probs=42.7
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeC-CCCH-----HHHHHHHHH
Q 044790 21 DQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVK-PIRK-----NELQNLWQH 94 (162)
Q Consensus 21 ~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~K-P~~~-----~~L~~~i~~ 94 (162)
..+..||+++.- .++++.|+... ..+||.+++.... .+...+-.-.++|+.. --+. ..|..+++.
T Consensus 31 ~~~~~~~~~~~~-----~~~~~~~~~~~--~~~p~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 101 (730)
T 1c4k_A 31 TDVGAVIAMDYE-----TDVIDAADATK--FGIPVFAVTKDAQ--AISADELKKIFHIIDLENKFDATVNAREIETAVNN 101 (730)
T ss_dssp SSEEEEEEETTC-----HHHHHHHHTTC--SCCCEEEEESCST--TSCHHHHTTCCEEEECC--CCSTTHHHHHHHHHHH
T ss_pred cceeEEEEECcH-----HHHHHHHHHhC--CCCCEEEEecccc--cCCHHHHhhcCeeEecccCCcHHHHHHHHHHHHHH
Confidence 357889999872 25899999877 8999999998642 2222234457788766 2222 345555555
Q ss_pred HH
Q 044790 95 VW 96 (162)
Q Consensus 95 ~l 96 (162)
..
T Consensus 102 ~~ 103 (730)
T 1c4k_A 102 YE 103 (730)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 372
>3rcy_A Mandelate racemase/muconate lactonizing enzyme-LI protein; structural genomics, protein structure initiative; HET: RIB; 1.99A {Roseovarius SP} PDB: 3t4w_A
Probab=41.27 E-value=68 Score=25.58 Aligned_cols=73 Identities=15% Similarity=0.129 Sum_probs=46.1
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceE-EeCCCCH
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYF-LVKPIRK 85 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~-l~KP~~~ 85 (162)
+..+|+++++.. .++++..+.--+|..+ ++.++.|++. ..+||+.-=.........++++.|+-|+ ..|+...
T Consensus 215 t~~~A~~~~~~L-e~~~i~~iEeP~~~~~-~~~~~~l~~~---~~iPIa~dE~~~~~~~~~~~l~~g~~D~v~~d~~~~ 288 (433)
T 3rcy_A 215 TTAGAIRLGQAI-EPYSPLWYEEPVPPDN-VGAMAQVARA---VRIPVATGERLTTKAEFAPVLREGAAAILQPALGRA 288 (433)
T ss_dssp CHHHHHHHHHHH-GGGCCSEEECCSCTTC-HHHHHHHHHH---SSSCEEECTTCCSHHHHHHHHHTTCCSEECCCHHHH
T ss_pred CHHHHHHHHHHh-hhcCCCEEECCCChhh-HHHHHHHHhc---cCCCEEecCCCCCHHHHHHHHHcCCCCEEEeCchhc
Confidence 456677666553 3456666665455333 6777888765 3678776555557778888998885555 5565433
No 373
>3dip_A Enolase; structural genomics, isomerase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, NYSGXRC, lyase; HET: SIC; 2.50A {Unidentified}
Probab=41.19 E-value=62 Score=25.56 Aligned_cols=73 Identities=10% Similarity=0.043 Sum_probs=47.7
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCC-CCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcC-CceEEeCCCCH
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVL-MPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKG-AVYFLVKPIRK 85 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~-mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~G-a~~~l~KP~~~ 85 (162)
+..+|+++++.. ..+++.+++-- +|..+ ++.+++|++.. .+||+.-=.........++++.| ++-+..|+...
T Consensus 225 ~~~~A~~~~~~L-~~~~i~~iEqP~~~~~~-~~~~~~l~~~~---~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k~~~~ 299 (410)
T 3dip_A 225 GTHAAARICNAL-ADYGVLWVEDPIAKMDN-IPAVADLRRQT---RAPICGGENLAGTRRFHEMLCADAIDFVMLDLTWC 299 (410)
T ss_dssp CHHHHHHHHHHG-GGGTCSEEECCBSCTTC-HHHHHHHHHHH---CCCEEECTTCCSHHHHHHHHHTTCCSEEEECTTTS
T ss_pred CHHHHHHHHHHH-HhcCCCEEECCCCCccc-HHHHHHHHhhC---CCCEEecCCcCCHHHHHHHHHcCCCCeEeeccccc
Confidence 456777776653 45666666654 44333 67778887653 67877654555677888888887 55557888654
No 374
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2
Probab=41.07 E-value=99 Score=22.32 Aligned_cols=73 Identities=15% Similarity=0.160 Sum_probs=47.7
Q ss_pred CccEEEEcCCCCCCCH-------HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeC-----CCCHHHHH
Q 044790 22 QIDLVLTEVLMPCLSG-------IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVK-----PIRKNELQ 89 (162)
Q Consensus 22 ~~DlvllD~~mp~~~g-------~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~K-----P~~~~~L~ 89 (162)
.+|+|++=..-|+..| ++-++++|+.. ..++|. +.+.-..+.+..+.++||+-++.= .-++.+-.
T Consensus 138 ~~D~VlvmsV~pGf~gq~f~~~~l~ki~~lr~~~--~~~~I~-VdGGI~~~ti~~~~~aGAd~~V~GsaIf~~~d~~~~i 214 (227)
T 1tqx_A 138 LINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKY--KNLNIQ-VDGGLNIETTEISASHGANIIVAGTSIFNAEDPKYVI 214 (227)
T ss_dssp CCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHC--TTCEEE-EESSCCHHHHHHHHHHTCCEEEESHHHHTCSSHHHHH
T ss_pred CcCEEEEeeeccCCCCcccchHHHHHHHHHHHhc--cCCeEE-EECCCCHHHHHHHHHcCCCEEEEeHHHhCCCCHHHHH
Confidence 5899987777777666 34456666543 355544 555667888999999999988654 33455555
Q ss_pred HHHHHHHH
Q 044790 90 NLWQHVWR 97 (162)
Q Consensus 90 ~~i~~~l~ 97 (162)
+.++..+.
T Consensus 215 ~~l~~~~~ 222 (227)
T 1tqx_A 215 DTMRVSVQ 222 (227)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55554443
No 375
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=41.02 E-value=1.4e+02 Score=24.17 Aligned_cols=73 Identities=18% Similarity=0.133 Sum_probs=47.8
Q ss_pred EcCHHHHHHHHHhhCCCccEEEEcCCCC-----------CCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcC
Q 044790 6 VENGLQAWKILEDLMDQIDLVLTEVLMP-----------CLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKG 74 (162)
Q Consensus 6 a~~~~eal~~l~~~~~~~DlvllD~~mp-----------~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~G 74 (162)
+.+.++|..+++. ..|.|++.+.-. +..-++++..+........+|||.-..-...+.+.+++.+|
T Consensus 280 v~t~e~a~~l~~a---GaD~I~Vg~g~Gs~~~tr~~~g~g~p~~~~i~~v~~~~~~~~iPVIa~GGI~~~~di~kala~G 356 (496)
T 4fxs_A 280 VATAEGARALIEA---GVSAVKVGIGPGSICTTRIVTGVGVPQITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAG 356 (496)
T ss_dssp ECSHHHHHHHHHH---TCSEEEECSSCCTTBCHHHHHCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTT
T ss_pred cCcHHHHHHHHHh---CCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHhccCCCeEEEeCCCCCHHHHHHHHHcC
Confidence 5566777666554 689998753211 12234555555431111369999988888899999999999
Q ss_pred CceEEeC
Q 044790 75 AVYFLVK 81 (162)
Q Consensus 75 a~~~l~K 81 (162)
|+..+.=
T Consensus 357 Ad~V~iG 363 (496)
T 4fxs_A 357 ASCVMVG 363 (496)
T ss_dssp CSEEEES
T ss_pred CCeEEec
Confidence 9988643
No 376
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} PDB: 3vcr_A
Probab=40.92 E-value=1e+02 Score=22.33 Aligned_cols=66 Identities=15% Similarity=0.052 Sum_probs=48.3
Q ss_pred EEcCHHHHHHHHHhhCCCccEEEEcCCCCCC--CHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEE
Q 044790 5 AVENGLQAWKILEDLMDQIDLVLTEVLMPCL--SGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFL 79 (162)
Q Consensus 5 ~a~~~~eal~~l~~~~~~~DlvllD~~mp~~--~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l 79 (162)
-+.+..|++..++. .+|+|=+ .|.. -|.++++.|+..- +++|++..- --..+.+.+.++.|+...+
T Consensus 118 G~~TptE~~~A~~~---Gad~vK~---FPa~~~gG~~~lkal~~p~--p~i~~~ptG-GI~~~N~~~~l~aGa~~~v 185 (217)
T 3lab_A 118 GVATASEVMIAAQA---GITQLKC---FPASAIGGAKLLKAWSGPF--PDIQFCPTG-GISKDNYKEYLGLPNVICA 185 (217)
T ss_dssp EECSHHHHHHHHHT---TCCEEEE---TTTTTTTHHHHHHHHHTTC--TTCEEEEBS-SCCTTTHHHHHHSTTBCCE
T ss_pred CCCCHHHHHHHHHc---CCCEEEE---CccccccCHHHHHHHHhhh--cCceEEEeC-CCCHHHHHHHHHCCCEEEE
Confidence 35678888888765 6888854 3543 3799999998743 788887544 4557888999999986554
No 377
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=40.83 E-value=60 Score=20.95 Aligned_cols=54 Identities=9% Similarity=0.040 Sum_probs=32.9
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 22 QIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 22 ~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
..|+||+-+.-+. .-..++..+|... +.++||+... +.+......++|++..+.
T Consensus 71 ~ad~vi~~~~~~~-~n~~~~~~a~~~~--~~~~iiar~~--~~~~~~~l~~~G~d~vi~ 124 (140)
T 3fwz_A 71 CAKWLILTIPNGY-EAGEIVASARAKN--PDIEIIARAH--YDDEVAYITERGANQVVM 124 (140)
T ss_dssp GCSEEEECCSCHH-HHHHHHHHHHHHC--SSSEEEEEES--SHHHHHHHHHTTCSEEEE
T ss_pred cCCEEEEECCChH-HHHHHHHHHHHHC--CCCeEEEEEC--CHHHHHHHHHCCCCEEEC
Confidence 4677776543221 1223455666654 6777776664 556667777899997774
No 378
>2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii}
Probab=40.57 E-value=40 Score=24.17 Aligned_cols=52 Identities=21% Similarity=0.162 Sum_probs=36.2
Q ss_pred HHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe-----CCCCHHHHHHHH
Q 044790 39 GLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV-----KPIRKNELQNLW 92 (162)
Q Consensus 39 ~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~-----KP~~~~~L~~~i 92 (162)
+..+.+|... ..+||+.-.+-...+.+..+...|+|++|. |+-++.+..+.+
T Consensus 159 ~~~~~ir~~~--~~~~ii~ggGI~~~~~~~~~~~~gaDgvlVGsAi~~~~d~~~~~~~l 215 (219)
T 2h6r_A 159 GTVRAVKEIN--KDVKVLCGAGISKGEDVKAALDLGAEGVLLASGVVKAKNVEEAIREL 215 (219)
T ss_dssp HHHHHHHHHC--TTCEEEECSSCCSHHHHHHHHTTTCCCEEESHHHHTCSSHHHHHHHH
T ss_pred HHHHHHHhcc--CCCeEEEEeCcCcHHHHHHHhhCCCCEEEEcHHHhCcccHHHHHHHH
Confidence 3456666653 478888888777788888889999999975 455555444433
No 379
>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}
Probab=40.44 E-value=46 Score=25.24 Aligned_cols=62 Identities=15% Similarity=0.064 Sum_probs=40.6
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCC-ceEEeCCCC--HH---HHHHHHHH
Q 044790 21 DQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGA-VYFLVKPIR--KN---ELQNLWQH 94 (162)
Q Consensus 21 ~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga-~~~l~KP~~--~~---~L~~~i~~ 94 (162)
.++|+||+|+ .|. .|...+...+... + .+.+...++-|. -.|+.|=|. -. +|+..++.
T Consensus 155 ~~~DvVLSDm-Apn-sG~~~~D~~rs~~----L----------L~~A~~~Lk~g~~G~Fv~KvF~pyg~~~~~l~~~lk~ 218 (282)
T 3gcz_A 155 IPGDTLLCDI-GES-SPSIAVEEQRTLR----V----------LNCAKQWLQEGNYTEFCIKVLCPYTPLIMEELSRLQL 218 (282)
T ss_dssp CCCSEEEECC-CCC-CSCHHHHHHHHHH----H----------HHHHHHHHHHHCCCEEEEEESCCCSHHHHHHHHHHHH
T ss_pred CCcCEEEecC-ccC-CCChHHHHHHHHH----H----------HHHHHHHcCCCCCCcEEEEEecCCCccHHHHHHHHHH
Confidence 6799999995 455 8877777776532 1 455667777773 579999887 34 44444444
Q ss_pred HHHh
Q 044790 95 VWRK 98 (162)
Q Consensus 95 ~l~~ 98 (162)
....
T Consensus 219 ~F~~ 222 (282)
T 3gcz_A 219 KHGG 222 (282)
T ss_dssp HHCC
T ss_pred hcCC
Confidence 4433
No 380
>2og9_A Mandelate racemase/muconate lactonizing enzyme; NYSGXRC, protein structure initiative (PSI) II, PSI-2, 9382A mandelate racemase; 1.90A {Polaromonas SP} PDB: 3cb3_A*
Probab=40.28 E-value=58 Score=25.42 Aligned_cols=72 Identities=13% Similarity=0.053 Sum_probs=44.7
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcC-CceEEeCCCC
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKG-AVYFLVKPIR 84 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~G-a~~~l~KP~~ 84 (162)
+.++++++++.. .++++.++.--+|. +-++.+++|++. ..+||+.-=.........++++.| ++-+..||..
T Consensus 219 ~~~~a~~~~~~l-~~~~i~~iE~P~~~-~~~~~~~~l~~~---~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~ 291 (393)
T 2og9_A 219 DRPTAQRMCRIF-EPFNLVWIEEPLDA-YDHEGHAALALQ---FDTPIATGEMLTSAAEHGDLIRHRAADYLMPDAPR 291 (393)
T ss_dssp CHHHHHHHHHHH-GGGCCSCEECCSCT-TCHHHHHHHHHH---CSSCEEECTTCCSHHHHHHHHHTTCCSEECCCHHH
T ss_pred CHHHHHHHHHHH-HhhCCCEEECCCCc-ccHHHHHHHHHh---CCCCEEeCCCcCCHHHHHHHHHCCCCCEEeeCccc
Confidence 456666666553 33455455443443 336777788765 368887655556778888888887 4555667643
No 381
>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A*
Probab=40.20 E-value=94 Score=23.88 Aligned_cols=62 Identities=11% Similarity=0.013 Sum_probs=41.2
Q ss_pred HHHHHHhhCCCccEEEEcC-------CCC--CCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcC-CceE
Q 044790 12 AWKILEDLMDQIDLVLTEV-------LMP--CLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKG-AVYF 78 (162)
Q Consensus 12 al~~l~~~~~~~DlvllD~-------~mp--~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~G-a~~~ 78 (162)
..+.+.+ ..+|.|-+-. .+| ....+++++.||+.- .+|||........+.+.++++.| +|.+
T Consensus 244 la~~L~~--~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~~~---~iPVi~~Ggi~t~e~a~~~l~~G~aD~V 315 (349)
T 3hgj_A 244 FARRLKE--LGVDLLDCSSGGVVLRVRIPLAPGFQVPFADAVRKRV---GLRTGAVGLITTPEQAETLLQAGSADLV 315 (349)
T ss_dssp HHHHHHH--TTCCEEEEECCCSCSSSCCCCCTTTTHHHHHHHHHHH---CCEEEECSSCCCHHHHHHHHHTTSCSEE
T ss_pred HHHHHHH--cCCCEEEEecCCcCcccccCCCccccHHHHHHHHHHc---CceEEEECCCCCHHHHHHHHHCCCceEE
Confidence 3444555 5688776642 111 112467888898753 68888777667899999999999 5544
No 382
>2o56_A Putative mandelate racemase; dehydratase, structural genomics, protein structure initiati 2; 2.00A {Salmonella typhimurium}
Probab=40.05 E-value=77 Score=24.77 Aligned_cols=81 Identities=9% Similarity=-0.000 Sum_probs=49.0
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcC-CceEEeCCCCHH
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKG-AVYFLVKPIRKN 86 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~G-a~~~l~KP~~~~ 86 (162)
+..+|+++++.. .++++..+.--++. +-++.+++|++. ..+||+.-=.........++++.| ++-+..|+...-
T Consensus 227 ~~~~a~~~~~~l-~~~~i~~iE~P~~~-~~~~~~~~l~~~---~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~G 301 (407)
T 2o56_A 227 DTTSAIQFGRMI-EELGIFYYEEPVMP-LNPAQMKQVADK---VNIPLAAGERIYWRWGYRPFLENGSLSVIQPDICTCG 301 (407)
T ss_dssp CHHHHHHHHHHH-GGGCCSCEECSSCS-SSHHHHHHHHHH---CCSCEEECTTCCHHHHHHHHHHTTCCSEECCCTTTTT
T ss_pred CHHHHHHHHHHH-HhcCCCEEeCCCCh-hhHHHHHHHHHh---CCCCEEeCCCcCCHHHHHHHHHcCCCCEEecCccccC
Confidence 456666666553 34555555544443 336777777764 257877544444667788888887 555577887655
Q ss_pred HHHHHHH
Q 044790 87 ELQNLWQ 93 (162)
Q Consensus 87 ~L~~~i~ 93 (162)
-|.+.++
T Consensus 302 Gite~~~ 308 (407)
T 2o56_A 302 GITEVKK 308 (407)
T ss_dssp HHHHHHH
T ss_pred CHHHHHH
Confidence 5544433
No 383
>2pgw_A Muconate cycloisomerase; enolase superfamily, octamer, small metabolism, PSI-II, NYSGXRC, structural genomics, PR structure initiative; 1.95A {Sinorhizobium meliloti}
Probab=40.03 E-value=68 Score=24.88 Aligned_cols=73 Identities=14% Similarity=0.162 Sum_probs=46.1
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcC-CceEEeCCCCH
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKG-AVYFLVKPIRK 85 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~G-a~~~l~KP~~~ 85 (162)
+..+++++++.. ..+++..+.--+|. +-++.+++|++. ..+||+.--.........++++.| ++.+..|+...
T Consensus 202 ~~~~a~~~~~~l-~~~~i~~iEqP~~~-~~~~~~~~l~~~---~~iPI~~de~i~~~~~~~~~i~~~~~d~v~ik~~~~ 275 (384)
T 2pgw_A 202 SVHDAINMCRKL-EKYDIEFIEQPTVS-WSIPAMAHVREK---VGIPIVADQAAFTLYDVYEICRQRAADMICIGPREI 275 (384)
T ss_dssp CHHHHHHHHHHH-GGGCCSEEECCSCT-TCHHHHHHHHHH---CSSCEEESTTCCSHHHHHHHHHTTCCSEEEECHHHH
T ss_pred CHHHHHHHHHHH-HhcCCCEEeCCCCh-hhHHHHHHHHhh---CCCCEEEeCCcCCHHHHHHHHHcCCCCEEEEcchhh
Confidence 456666665543 33455455544443 336777888764 368887655555788888888876 66667888543
No 384
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=39.87 E-value=1.1e+02 Score=23.11 Aligned_cols=66 Identities=15% Similarity=0.131 Sum_probs=45.3
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHHHh
Q 044790 23 IDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVWRK 98 (162)
Q Consensus 23 ~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 98 (162)
.|++++-... +.-|..+++.+. ..+|||........ +.+..|-.+++..|-+.++|...|..++..
T Consensus 285 adv~v~ps~~-e~~~~~~~EAma-----~G~PvI~~~~~~~~----e~v~~~~~g~~~~~~d~~~la~~i~~l~~~ 350 (394)
T 2jjm_A 285 SDLMLLLSEK-ESFGLVLLEAMA-----CGVPCIGTRVGGIP----EVIQHGDTGYLCEVGDTTGVADQAIQLLKD 350 (394)
T ss_dssp CSEEEECCSC-CSCCHHHHHHHH-----TTCCEEEECCTTST----TTCCBTTTEEEECTTCHHHHHHHHHHHHHC
T ss_pred CCEEEecccc-CCCchHHHHHHh-----cCCCEEEecCCChH----HHhhcCCceEEeCCCCHHHHHHHHHHHHcC
Confidence 5777765443 334566777764 47888865543222 234557789999999999999999988763
No 385
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=39.83 E-value=78 Score=25.30 Aligned_cols=74 Identities=11% Similarity=0.184 Sum_probs=46.7
Q ss_pred CCccEEEEcCC--CCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHHHh
Q 044790 21 DQIDLVLTEVL--MPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVWRK 98 (162)
Q Consensus 21 ~~~DlvllD~~--mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 98 (162)
....++|+|=. ++...--.+++.+.. ..+.+|..|.......+..++..-+.-|..+|.+.+++...|+..+..
T Consensus 105 ~~~~iLfIDEI~~l~~~~q~~LL~~le~----~~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~ 180 (447)
T 3pvs_A 105 GRRTILFVDEVHRFNKSQQDAFLPHIED----GTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMED 180 (447)
T ss_dssp TCCEEEEEETTTCC------CCHHHHHT----TSCEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHC
T ss_pred CCCcEEEEeChhhhCHHHHHHHHHHHhc----CceEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHH
Confidence 35678888742 222111234555543 345566666544444455677777778899999999999999998876
No 386
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=39.82 E-value=63 Score=21.80 Aligned_cols=74 Identities=12% Similarity=0.157 Sum_probs=42.2
Q ss_pred CccEEEEcC-CCCCCCHHHH-HHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 044790 22 QIDLVLTEV-LMPCLSGIGL-LRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVWRKC 99 (162)
Q Consensus 22 ~~DlvllD~-~mp~~~g~~~-~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~~ 99 (162)
.+.+|++|- ..-.....+. .+.+.... ..+.+|+++.. .......+...+.-+-.+|++.+++...+...+...
T Consensus 102 ~~~vliiDe~~~l~~~~~~~l~~~l~~~~--~~~~~i~~~~~--~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~ 177 (226)
T 2chg_A 102 PFKIIFLDEADALTADAQAALRRTMEMYS--KSCRFILSCNY--VSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKE 177 (226)
T ss_dssp SCEEEEEETGGGSCHHHHHHHHHHHHHTT--TTEEEEEEESC--GGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred CceEEEEeChhhcCHHHHHHHHHHHHhcC--CCCeEEEEeCC--hhhcCHHHHHhCceeecCCCCHHHHHHHHHHHHHHc
Confidence 467888873 2211122333 33443322 34555555543 233344455556677788999999999998877653
No 387
>3mkc_A Racemase; metabolic process, PSI2, NYSGXRC, structu genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; 1.77A {Pseudovibrio SP} PDB: 3nzg_A
Probab=39.75 E-value=54 Score=25.74 Aligned_cols=79 Identities=11% Similarity=0.137 Sum_probs=50.0
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcC-CceEEeCCCCHH
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKG-AVYFLVKPIRKN 86 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~G-a~~~l~KP~~~~ 86 (162)
+..+|+++++.. .++++.+++--+|.. -++.+++|++. ..+||+.-=.-.......++++.| ++-+..|+...-
T Consensus 218 ~~~~A~~~~~~L-~~~~i~~iEeP~~~~-d~~~~~~l~~~---~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k~~~~G 292 (394)
T 3mkc_A 218 DWYEVARLLNSI-EDLELYFAEATLQHD-DLSGHAKLVEN---TRSRICGAEMSTTRFEAEEWITKGKVHLLQSDYNRCG 292 (394)
T ss_dssp CHHHHHHHHHHT-GGGCCSEEESCSCTT-CHHHHHHHHHH---CSSCBEECTTCCHHHHHHHHHHTTCCSEECCCTTTTT
T ss_pred CHHHHHHHHHHh-hhcCCeEEECCCCch-hHHHHHHHHhh---CCCCEEeCCCCCCHHHHHHHHHcCCCCeEecCccccC
Confidence 567788877763 456666666555432 36677888765 357876544444567778888877 555677776654
Q ss_pred HHHHH
Q 044790 87 ELQNL 91 (162)
Q Consensus 87 ~L~~~ 91 (162)
=|...
T Consensus 293 Git~~ 297 (394)
T 3mkc_A 293 GLTEL 297 (394)
T ss_dssp HHHHH
T ss_pred CHHHH
Confidence 44443
No 388
>3stp_A Galactonate dehydratase, putative; PSI biology, structural genomics, NEW YORK structural genomi research consortium; 1.88A {Labrenzia aggregata iam 12614} PDB: 3sqs_A 3ssz_A
Probab=39.62 E-value=82 Score=24.91 Aligned_cols=73 Identities=14% Similarity=-0.007 Sum_probs=45.1
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCce-EEeCCCCH
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVY-FLVKPIRK 85 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~-~l~KP~~~ 85 (162)
+..+|+++++.. ..+++..++--+|.. -++.+++|++. ..+||+.==.........++++.|+-| +..|+...
T Consensus 242 ~~~~Ai~~~~~L-e~~~i~~iEeP~~~~-d~~~~~~l~~~---~~iPIa~dE~~~~~~~~~~li~~~a~D~v~ik~~~~ 315 (412)
T 3stp_A 242 NLDYAKRMLPKL-APYEPRWLEEPVIAD-DVAGYAELNAM---NIVPISGGEHEFSVIGCAELINRKAVSVLQYDTNRV 315 (412)
T ss_dssp CHHHHHHHHHHH-GGGCCSEEECCSCTT-CHHHHHHHHHT---CSSCEEECTTCCSHHHHHHHHHTTCCSEECCCHHHH
T ss_pred CHHHHHHHHHHH-HhcCCCEEECCCCcc-cHHHHHHHHhC---CCCCEEeCCCCCCHHHHHHHHHcCCCCEEecChhhc
Confidence 456676666553 345665665444432 36677888765 367877544445677788888887555 46666443
No 389
>3kbb_A Phosphorylated carbohydrates phosphatase TM_1254; hydrolase, arbohydrate metabolism, COBA magnesium, manganese, metal-binding, nickel; HET: MSE GOL; 1.74A {Thermotoga maritima MSB8}
Probab=39.52 E-value=66 Score=21.82 Aligned_cols=39 Identities=10% Similarity=0.030 Sum_probs=25.1
Q ss_pred HHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEE
Q 044790 37 GIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFL 79 (162)
Q Consensus 37 g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l 79 (162)
-.++++.+++ ..+++.++|..............|..+|+
T Consensus 89 ~~~~l~~L~~----~g~~~~i~tn~~~~~~~~~l~~~~l~~~f 127 (216)
T 3kbb_A 89 VREALEFVKS----KRIKLALATSTPQREALERLRRLDLEKYF 127 (216)
T ss_dssp HHHHHHHHHH----TTCEEEEECSSCHHHHHHHHHHTTCGGGC
T ss_pred HHHHHHHHHH----cCCCcccccCCcHHHHHHHHHhcCCCccc
Confidence 3567888876 46888888886554444444456766553
No 390
>3n07_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; structural genomics, phosphatase, PSI-2, protein structure initiative; HET: MSE; 1.76A {Vibrio cholerae}
Probab=39.18 E-value=94 Score=21.50 Aligned_cols=49 Identities=12% Similarity=0.093 Sum_probs=34.9
Q ss_pred HHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHH
Q 044790 41 LRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQ 93 (162)
Q Consensus 41 ~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~ 93 (162)
++.+++ ..+++.++|..........+-..|+..|+...-+....+..+.
T Consensus 61 l~~L~~----~G~~~~ivT~~~~~~~~~~l~~lgi~~~~~~~k~k~~~~~~~~ 109 (195)
T 3n07_A 61 VKALMN----AGIEIAIITGRRSQIVENRMKALGISLIYQGQDDKVQAYYDIC 109 (195)
T ss_dssp HHHHHH----TTCEEEEECSSCCHHHHHHHHHTTCCEEECSCSSHHHHHHHHH
T ss_pred HHHHHH----CCCEEEEEECcCHHHHHHHHHHcCCcEEeeCCCCcHHHHHHHH
Confidence 777776 4689999999887777777778899998765544444444443
No 391
>2qgy_A Enolase from the environmental genome shotgun sequencing of the sargasso SEA; structural genomics, unknown function, PSI-2; 1.80A {Environmental sample}
Probab=39.04 E-value=60 Score=25.33 Aligned_cols=73 Identities=18% Similarity=0.131 Sum_probs=47.0
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcC-CceEEeCCCCH
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKG-AVYFLVKPIRK 85 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~G-a~~~l~KP~~~ 85 (162)
+.++++++++.. .++++.++.--+|. +-++.+++|++. ..+||+.-=.........++++.| ++-+..|+...
T Consensus 206 ~~~~a~~~~~~l-~~~~i~~iEqP~~~-~d~~~~~~l~~~---~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~ 279 (391)
T 2qgy_A 206 DLDQTKSFLKEV-SSFNPYWIEEPVDG-ENISLLTEIKNT---FNMKVVTGEKQSGLVHFRELISRNAADIFNPDISGM 279 (391)
T ss_dssp CHHHHHHHHHHH-GGGCCSEEECSSCT-TCHHHHHHHHHH---CSSCEEECTTCCSHHHHHHHHHTTCCSEECCBTTTS
T ss_pred CHHHHHHHHHHH-HhcCCCeEeCCCCh-hhHHHHHHHHhh---CCCCEEEcCCcCCHHHHHHHHHcCCCCEEEECcchh
Confidence 456777776653 34555555544443 336777888765 367877655555778888888887 55556788654
No 392
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=39.02 E-value=69 Score=20.27 Aligned_cols=44 Identities=14% Similarity=0.045 Sum_probs=24.1
Q ss_pred HHHHHH-HHHhhCCCccEEEEcCCC-CCC----CHHHHHHHHHccCCCCCCcEEEE
Q 044790 9 GLQAWK-ILEDLMDQIDLVLTEVLM-PCL----SGIGLLRKIMNHKTCKNIPVIMM 58 (162)
Q Consensus 9 ~~eal~-~l~~~~~~~DlvllD~~m-p~~----~g~~~~~~ir~~~~~~~~piI~l 58 (162)
..+.++ ..++ ..+|+|++...- ... -|--.-+.++. ..+||+++
T Consensus 96 ~~~I~~~~a~~--~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~----~~~pVlvV 145 (146)
T 3s3t_A 96 KHTIEDYAKQH--PEIDLIVLGATGTNSPHRVAVGSTTSYVVDH----APCNVIVI 145 (146)
T ss_dssp HHHHHHHHHHS--TTCCEEEEESCCSSCTTTCSSCHHHHHHHHH----CSSEEEEE
T ss_pred HHHHHHHHHhh--cCCCEEEECCCCCCCcceEEEcchHHHHhcc----CCCCEEEe
Confidence 344445 4555 789999998642 211 22222333343 35888875
No 393
>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A
Probab=38.99 E-value=1.1e+02 Score=22.45 Aligned_cols=72 Identities=11% Similarity=0.057 Sum_probs=47.7
Q ss_pred EEEEcCHHHHHHHHHhhCC-CccEEEEcCC-C--CCCCHHHHHHHHHc-cCCCCCCcEEEEecCCCHHHHHHHHHcCCce
Q 044790 3 VIAVENGLQAWKILEDLMD-QIDLVLTEVL-M--PCLSGIGLLRKIMN-HKTCKNIPVIMMSSHDSMSIVFKCLSKGAVY 77 (162)
Q Consensus 3 v~~a~~~~eal~~l~~~~~-~~DlvllD~~-m--p~~~g~~~~~~ir~-~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~ 77 (162)
++.+++.+|+...+. . .+|+|-+... + -..| ++....+.. .+ ..+++|.=++-..++.+.++.+. +++
T Consensus 154 lvEv~~~eE~~~A~~---l~g~~iIGinnr~l~t~~~d-~~~~~~l~~~ip--~~~~vIaEsGI~t~edv~~~~~~-a~a 226 (251)
T 1i4n_A 154 LVEVHSREDLEKVFS---VIRPKIIGINTRDLDTFEIK-KNVLWELLPLVP--DDTVVVAESGIKDPRELKDLRGK-VNA 226 (251)
T ss_dssp EEEECSHHHHHHHHT---TCCCSEEEEECBCTTTCCBC-TTHHHHHGGGSC--TTSEEEEESCCCCGGGHHHHTTT-CSE
T ss_pred EEEeCCHHHHHHHHh---cCCCCEEEEeCcccccCCCC-HHHHHHHHHhCC--CCCEEEEeCCCCCHHHHHHHHHh-CCE
Confidence 457888888765544 5 7898866542 1 1122 344545543 33 45677777777789999999999 999
Q ss_pred EEeC
Q 044790 78 FLVK 81 (162)
Q Consensus 78 ~l~K 81 (162)
+|.=
T Consensus 227 vLVG 230 (251)
T 1i4n_A 227 VLVG 230 (251)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9753
No 394
>1xvi_A MPGP, YEDP, putative mannosyl-3-phosphoglycerate phosphatase; hypothetical protein, conserved protein, phophatase-like domain; HET: 1PE PG4 PGE; 2.26A {Escherichia coli K12} SCOP: c.108.1.10
Probab=38.99 E-value=1e+02 Score=22.29 Aligned_cols=50 Identities=24% Similarity=0.349 Sum_probs=29.5
Q ss_pred CccEEEEcCC---CCC-----CCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCC
Q 044790 22 QIDLVLTEVL---MPC-----LSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGA 75 (162)
Q Consensus 22 ~~DlvllD~~---mp~-----~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga 75 (162)
.+-+|++|+. +.. ..-.++++++++ ..+++++.|++.........-..|.
T Consensus 8 ~~~li~~DlDGTLl~~~~~~~~~~~~~l~~l~~----~G~~~~iaTGR~~~~~~~~~~~l~~ 65 (275)
T 1xvi_A 8 QPLLVFSDLDGTLLDSHSYDWQPAAPWLTRLRE----ANVPVILCSSKTSAEMLYLQKTLGL 65 (275)
T ss_dssp CCEEEEEECTTTTSCSSCCSCCTTHHHHHHHHH----TTCCEEEECSSCHHHHHHHHHHTTC
T ss_pred CceEEEEeCCCCCCCCCCcCCHHHHHHHHHHHH----CCCeEEEEcCCCHHHHHHHHHHcCC
Confidence 4678888873 221 112566777765 4688999999875544333333443
No 395
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=38.94 E-value=81 Score=20.71 Aligned_cols=67 Identities=13% Similarity=0.174 Sum_probs=40.7
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCC--CCHHHHHHHHHHHHHh
Q 044790 22 QIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKP--IRKNELQNLWQHVWRK 98 (162)
Q Consensus 22 ~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP--~~~~~L~~~i~~~l~~ 98 (162)
..|++|+- + -+..+++.+. ..+|+|++....+.....+.+...-.+++..+ ++.++|...|..++..
T Consensus 86 ~ad~~I~~---~--G~~t~~Ea~~-----~G~P~i~~p~~~~Q~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~~ 154 (170)
T 2o6l_A 86 KTRAFITH---G--GANGIYEAIY-----HGIPMVGIPLFADQPDNIAHMKARGAAVRVDFNTMSSTDLLNALKRVIND 154 (170)
T ss_dssp TEEEEEEC---C--CHHHHHHHHH-----HTCCEEECCCSTTHHHHHHHHHTTTSEEECCTTTCCHHHHHHHHHHHHHC
T ss_pred CcCEEEEc---C--CccHHHHHHH-----cCCCEEeccchhhHHHHHHHHHHcCCeEEeccccCCHHHHHHHHHHHHcC
Confidence 46777752 1 1344455554 36899888765444444444444334555554 4889999999988753
No 396
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=38.14 E-value=1.4e+02 Score=23.22 Aligned_cols=64 Identities=9% Similarity=0.076 Sum_probs=43.7
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcC---------CceEEeCCCCHHHHHHHHH
Q 044790 23 IDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKG---------AVYFLVKPIRKNELQNLWQ 93 (162)
Q Consensus 23 ~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~G---------a~~~l~KP~~~~~L~~~i~ 93 (162)
.|++++=... ..-|..+++.+. ..+|||+... .-..+.+..| ..+|+..|.+.++|...|.
T Consensus 366 adv~v~pS~~-E~~~~~~lEAma-----~G~PvI~s~~----gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~ 435 (485)
T 1rzu_A 366 CDAIIIPSRF-EPCGLTQLYALR-----YGCIPVVART----GGLADTVIDANHAALASKAATGVQFSPVTLDGLKQAIR 435 (485)
T ss_dssp CSEEEECCSC-CSSCSHHHHHHH-----HTCEEEEESS----HHHHHHCCBCCHHHHHTTCCCBEEESSCSHHHHHHHHH
T ss_pred CCEEEECccc-CCCCHHHHHHHH-----CCCCEEEeCC----CChhheecccccccccccCCcceEeCCCCHHHHHHHHH
Confidence 4666664332 333455666664 3678886432 3345556666 7899999999999999999
Q ss_pred HHH
Q 044790 94 HVW 96 (162)
Q Consensus 94 ~~l 96 (162)
.++
T Consensus 436 ~ll 438 (485)
T 1rzu_A 436 RTV 438 (485)
T ss_dssp HHH
T ss_pred HHH
Confidence 987
No 397
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=38.11 E-value=1e+02 Score=21.70 Aligned_cols=22 Identities=5% Similarity=0.167 Sum_probs=15.9
Q ss_pred EEeCCCCHHHHHHHHHHHHHhc
Q 044790 78 FLVKPIRKNELQNLWQHVWRKC 99 (162)
Q Consensus 78 ~l~KP~~~~~L~~~i~~~l~~~ 99 (162)
+..++.+.++....++.++...
T Consensus 172 i~i~~p~~~~r~~il~~~~~~~ 193 (262)
T 2qz4_A 172 VFIDLPTLQERREIFEQHLKSL 193 (262)
T ss_dssp EECCSCCHHHHHHHHHHHHHHT
T ss_pred EEeCCcCHHHHHHHHHHHHHhC
Confidence 3445668888888888877764
No 398
>1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix}
Probab=37.90 E-value=1.3e+02 Score=22.57 Aligned_cols=84 Identities=18% Similarity=0.145 Sum_probs=50.9
Q ss_pred HHHHHHHHHhhCCCccEEEEc-CC--CCC----CCHHHHHHHHHccCCCCCCcEEEEecCCC------HHHHHHHHHcCC
Q 044790 9 GLQAWKILEDLMDQIDLVLTE-VL--MPC----LSGIGLLRKIMNHKTCKNIPVIMMSSHDS------MSIVFKCLSKGA 75 (162)
Q Consensus 9 ~~eal~~l~~~~~~~DlvllD-~~--mp~----~~g~~~~~~ir~~~~~~~~piI~lt~~~~------~~~~~~a~~~Ga 75 (162)
-..|++.+... ...+++||. .. -|. .--+..+..+++. .++||++.+++.. ......+...||
T Consensus 161 i~~Ave~i~~~-Gn~~i~L~~Rg~~~yp~y~~~~vdl~~i~~lk~~---~~lpVi~dssH~~g~~~~~~~~~~aAva~Ga 236 (276)
T 1vs1_A 161 LLAAAEYILLE-GNWQVVLVERGIRTFEPSTRFTLDVAAVAVLKEA---THLPVIVDPSHPAGRRSLVPALAKAGLAAGA 236 (276)
T ss_dssp HHHHHHHHHHT-TCCCEEEEECCBCCSCCSSSSBCBHHHHHHHHHH---BSSCEEECCHHHHCSGGGHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHc-CCCeEEEEeCCcCCCCCcCcchhCHHHHHHHHHH---hCCCEEEeCCCCCCccchHHHHHHHHHHcCC
Confidence 34577777652 457999987 22 222 1123445666653 3688887776542 355667788999
Q ss_pred ceE-EeCCC-------------CHHHHHHHHHHHH
Q 044790 76 VYF-LVKPI-------------RKNELQNLWQHVW 96 (162)
Q Consensus 76 ~~~-l~KP~-------------~~~~L~~~i~~~l 96 (162)
+++ |-|-+ .+++|...++.+.
T Consensus 237 ~Gl~IE~H~~~d~a~~D~~~sl~p~~~~~lv~~i~ 271 (276)
T 1vs1_A 237 DGLIVEVHPNPEEALSDAKQQLTPGEFARLMGELR 271 (276)
T ss_dssp SEEEEEBCSSGGGCSSCGGGCBCHHHHHHHHHHHH
T ss_pred CEEEEEecCCcccCCCchhcCCCHHHHHHHHHHHH
Confidence 976 45544 5667777766553
No 399
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=37.87 E-value=1.1e+02 Score=23.16 Aligned_cols=55 Identities=7% Similarity=0.052 Sum_probs=35.3
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHH
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVF 68 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~ 68 (162)
+....+..+.. ..||+|++.. .+.....+++.+++.. ..+|++............
T Consensus 186 d~~~~~~~l~~--~~~dav~~~~--~~~~a~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~ 240 (392)
T 3lkb_A 186 DNTALLKRFEQ--AGVEYVVHQN--VAGPVANILKDAKRLG--LKMRHLGAHYTGGPDLIA 240 (392)
T ss_dssp CCHHHHHHHHH--TTCCEEEEES--CHHHHHHHHHHHHHTT--CCCEEEECGGGCSHHHHH
T ss_pred CHHHHHHHHHh--cCCCEEEEec--CcchHHHHHHHHHHcC--CCceEEEecCcccHHHHH
Confidence 45567777777 7899999754 2344567778887765 567766554444444443
No 400
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=37.82 E-value=1.4e+02 Score=23.19 Aligned_cols=64 Identities=13% Similarity=0.092 Sum_probs=44.1
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcC---------CceEEeCCCCHHHHHHHHH
Q 044790 23 IDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKG---------AVYFLVKPIRKNELQNLWQ 93 (162)
Q Consensus 23 ~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~G---------a~~~l~KP~~~~~L~~~i~ 93 (162)
.|++++=... ..-|..+++.+. ..+|||.... .-..+.+..| ..+|+..|.+.++|...|.
T Consensus 367 adv~v~pS~~-E~~g~~~lEAma-----~G~PvI~s~~----gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~ 436 (485)
T 2qzs_A 367 ADVILVPSRF-EPCGLTQLYGLK-----YGTLPLVRRT----GGLADTVSDCSLENLADGVASGFVFEDSNAWSLLRAIR 436 (485)
T ss_dssp CSEEEECCSC-CSSCSHHHHHHH-----HTCEEEEESS----HHHHHHCCBCCHHHHHTTCCCBEEECSSSHHHHHHHHH
T ss_pred CCEEEECCcc-CCCcHHHHHHHH-----CCCCEEECCC----CCccceeccCccccccccccceEEECCCCHHHHHHHHH
Confidence 4666664432 334555666664 3678886532 3345556666 8999999999999999999
Q ss_pred HHH
Q 044790 94 HVW 96 (162)
Q Consensus 94 ~~l 96 (162)
.++
T Consensus 437 ~ll 439 (485)
T 2qzs_A 437 RAF 439 (485)
T ss_dssp HHH
T ss_pred HHH
Confidence 987
No 401
>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A
Probab=37.81 E-value=91 Score=23.61 Aligned_cols=54 Identities=17% Similarity=0.148 Sum_probs=38.0
Q ss_pred HHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHH
Q 044790 39 GLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHV 95 (162)
Q Consensus 39 ~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~ 95 (162)
+.++.+|+... +..+|++-+. ..+.+.++.+.|++....-+++++.|...++.+
T Consensus 185 ~ai~~~r~~~~-~~~~i~vev~--tlee~~~A~~aGaD~I~ld~~~~~~l~~~v~~l 238 (299)
T 2jbm_A 185 KAVRAARQAAD-FALKVEVECS--SLQEAVQAAEAGADLVLLDNFKPEELHPTATVL 238 (299)
T ss_dssp HHHHHHHHHHT-TTSCEEEEES--SHHHHHHHHHTTCSEEEEESCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCC-cCCeEEEecC--CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Confidence 34566665431 2356666554 347788899999999988889999988777654
No 402
>3pgv_A Haloacid dehalogenase-like hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: EPE; 2.39A {Klebsiella pneumoniae subsp}
Probab=37.74 E-value=68 Score=23.27 Aligned_cols=54 Identities=9% Similarity=0.135 Sum_probs=32.3
Q ss_pred CCccEEEEcCC--C-C---CC--CHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceE
Q 044790 21 DQIDLVLTEVL--M-P---CL--SGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYF 78 (162)
Q Consensus 21 ~~~DlvllD~~--m-p---~~--~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~ 78 (162)
..+-+|++|+. + . .. .-.+.+++++. ..+.+++.|++.......-.-..|...|
T Consensus 19 ~~~kli~~DlDGTLl~~~~~i~~~~~~al~~l~~----~G~~v~iaTGR~~~~~~~~~~~l~~~~~ 80 (285)
T 3pgv_A 19 GMYQVVASDLDGTLLSPDHFLTPYAKETLKLLTA----RGINFVFATGRHYIDVGQIRDNLGIRSY 80 (285)
T ss_dssp --CCEEEEECCCCCSCTTSCCCHHHHHHHHHHHT----TTCEEEEECSSCGGGGHHHHHHHCSCCE
T ss_pred CcceEEEEeCcCCCCCCCCcCCHHHHHHHHHHHH----CCCEEEEEcCCCHHHHHHHHHhcCCCcc
Confidence 56889999984 1 1 11 12345555554 4789999999886665444445566554
No 403
>4dwd_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, EFI, enzyme function initiative, metal protein; HET: MSE; 1.50A {Paracoccus denitrificans} PDB: 3n4e_A*
Probab=37.72 E-value=78 Score=24.84 Aligned_cols=78 Identities=9% Similarity=0.094 Sum_probs=46.6
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHH
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNE 87 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~ 87 (162)
+..+|+++++.. ..+++.+++--+|.. -++.+++|++. ..+||+.-=.........++++.|++-+..|+...-=
T Consensus 203 ~~~~A~~~~~~L-~~~~i~~iEqP~~~~-d~~~~~~l~~~---~~iPIa~dE~~~~~~~~~~~i~~~~d~v~~k~~~~GG 277 (393)
T 4dwd_A 203 SVGGAIRVGRAL-EDLGYSWFEEPVQHY-HVGAMGEVAQR---LDITVSAGEQTYTLQALKDLILSGVRMVQPDIVKMGG 277 (393)
T ss_dssp CHHHHHHHHHHH-HHTTCSEEECCSCTT-CHHHHHHHHHH---CSSEEEBCTTCCSHHHHHHHHHHTCCEECCCTTTTTH
T ss_pred CHHHHHHHHHHH-HhhCCCEEECCCCcc-cHHHHHHHHhh---CCCCEEecCCcCCHHHHHHHHHcCCCEEEeCccccCC
Confidence 345666555442 235555555444432 36777788765 3577664434456777788888887777888876544
Q ss_pred HHH
Q 044790 88 LQN 90 (162)
Q Consensus 88 L~~ 90 (162)
|..
T Consensus 278 it~ 280 (393)
T 4dwd_A 278 ITG 280 (393)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 404
>3ugv_A Enolase; enzyme function initiative, EFI, lyase; 2.30A {Alpha proteobacterium BAL199}
Probab=37.67 E-value=1.1e+02 Score=23.84 Aligned_cols=77 Identities=12% Similarity=0.117 Sum_probs=47.5
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCC-ceEEeCCCCHH
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGA-VYFLVKPIRKN 86 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga-~~~l~KP~~~~ 86 (162)
+..+|+++++.. ..+++.++.--+|.. -++.+++|++. ..+||..==.........++++.|+ +-+..|+...-
T Consensus 231 ~~~~A~~~~~~l-~~~~i~~iEqP~~~~-d~~~~~~l~~~---~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~ik~~~~G 305 (390)
T 3ugv_A 231 DMAEAMHRTRQI-DDLGLEWIEEPVVYD-NFDGYAQLRHD---LKTPLMIGENFYGPREMHQALQAGACDLVMPDFMRIG 305 (390)
T ss_dssp CHHHHHHHHHHH-TTSCCSEEECCSCTT-CHHHHHHHHHH---CSSCEEECTTCCSHHHHHHHHHTTCCSEECCBHHHHT
T ss_pred CHHHHHHHHHHH-HhhCCCEEECCCCcc-cHHHHHHHHHh---cCCCEEeCCCcCCHHHHHHHHHcCCCCEEEeCccccC
Confidence 456777777664 456666666544432 36667788765 3578775444456777888888874 55566765433
Q ss_pred HHH
Q 044790 87 ELQ 89 (162)
Q Consensus 87 ~L~ 89 (162)
=|.
T Consensus 306 Git 308 (390)
T 3ugv_A 306 GVS 308 (390)
T ss_dssp HHH
T ss_pred CHH
Confidence 333
No 405
>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A
Probab=37.41 E-value=1.6e+02 Score=23.73 Aligned_cols=81 Identities=15% Similarity=0.046 Sum_probs=54.4
Q ss_pred EEEEcCHHHHHHHHHhhCCCccEEEEcCC---CCCCCHHHHHHHHHc-cCCCCCCcEEEEecCCCHHHHHHHHHcCCceE
Q 044790 3 VIAVENGLQAWKILEDLMDQIDLVLTEVL---MPCLSGIGLLRKIMN-HKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYF 78 (162)
Q Consensus 3 v~~a~~~~eal~~l~~~~~~~DlvllD~~---mp~~~g~~~~~~ir~-~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~ 78 (162)
+..+++.+|+...+.- .+|+|=+... --..| ++...+|.. .+ .++++|.=++-..++.+.++.+. ++++
T Consensus 161 LvEvh~~eE~~~A~~l---ga~iIGinnr~L~t~~~d-l~~~~~L~~~ip--~~~~vIaEsGI~t~edv~~~~~~-a~av 233 (452)
T 1pii_A 161 LTEVSNEEEQERAIAL---GAKVVGINNRDLRDLSID-LNRTRELAPKLG--HNVTVISESGINTYAQVRELSHF-ANGF 233 (452)
T ss_dssp EEEECSHHHHHHHHHT---TCSEEEEESEETTTTEEC-THHHHHHHHHHC--TTSEEEEESCCCCHHHHHHHTTT-CSEE
T ss_pred EEEeCCHHHHHHHHHC---CCCEEEEeCCCCCCCCCC-HHHHHHHHHhCC--CCCeEEEECCCCCHHHHHHHHHh-CCEE
Confidence 4578899998777664 6788776432 11122 444545433 33 46788888888899999999999 9999
Q ss_pred Ee-----CCCCHHHHHH
Q 044790 79 LV-----KPIRKNELQN 90 (162)
Q Consensus 79 l~-----KP~~~~~L~~ 90 (162)
|. |+-++.....
T Consensus 234 LVGealmr~~d~~~~~~ 250 (452)
T 1pii_A 234 LIGSALMAHDDLHAAVR 250 (452)
T ss_dssp EECHHHHTCSCHHHHHH
T ss_pred EEcHHHcCCcCHHHHHH
Confidence 75 4555544333
No 406
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=37.32 E-value=97 Score=25.07 Aligned_cols=75 Identities=9% Similarity=0.227 Sum_probs=45.4
Q ss_pred CCccEEEEcCC--CCC--CCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHH
Q 044790 21 DQIDLVLTEVL--MPC--LSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVW 96 (162)
Q Consensus 21 ~~~DlvllD~~--mp~--~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l 96 (162)
..+.+||+|=. |.. ..++..+..+-.. ...|||+++........ ..+..-+..+-.+|.+.+++...|..++
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~---~~~~iIli~~~~~~~~l-~~l~~r~~~i~f~~~~~~~~~~~L~~i~ 222 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK---TSTPLILICNERNLPKM-RPFDRVCLDIQFRRPDANSIKSRLMTIA 222 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHH---CSSCEEEEESCTTSSTT-GGGTTTSEEEECCCCCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHh---cCCCEEEEEcCCCCccc-hhhHhceEEEEeCCCCHHHHHHHHHHHH
Confidence 35678898742 332 2344444333222 46788888875432222 2233445577778899999999998877
Q ss_pred Hhc
Q 044790 97 RKC 99 (162)
Q Consensus 97 ~~~ 99 (162)
...
T Consensus 223 ~~~ 225 (516)
T 1sxj_A 223 IRE 225 (516)
T ss_dssp HHH
T ss_pred HHc
Confidence 654
No 407
>1vd6_A Glycerophosphoryl diester phosphodiesterase; glycerophosphod phosphodiesterase, HB8; 1.30A {Thermus thermophilus} SCOP: c.1.18.3 PDB: 1v8e_A
Probab=37.29 E-value=76 Score=22.50 Aligned_cols=39 Identities=8% Similarity=0.001 Sum_probs=29.3
Q ss_pred HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeC
Q 044790 38 IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVK 81 (162)
Q Consensus 38 ~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~K 81 (162)
-++++.+++ ..++|.+.|- .+...+.++++.|++++++-
T Consensus 176 ~~~v~~~~~----~G~~v~~wtv-n~~~~~~~l~~~GvdgI~TD 214 (224)
T 1vd6_A 176 EEAVAGWRK----RGLFVVAWTV-NEEGEARRLLALGLDGLIGD 214 (224)
T ss_dssp HHHHHHHHH----TTCEEEEECC-CCHHHHHHHHHTTCSEEEES
T ss_pred HHHHHHHHH----CCCEEEEEeC-CCHHHHHHHHhcCCCEEEcC
Confidence 356666665 4678888875 56778889999999999865
No 408
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=37.21 E-value=77 Score=19.94 Aligned_cols=44 Identities=14% Similarity=0.169 Sum_probs=24.3
Q ss_pred HHHHHHHHhhCCCccEEEEcCCCCCCCH---HHHHHHHHccCCCCCCcEEEE
Q 044790 10 LQAWKILEDLMDQIDLVLTEVLMPCLSG---IGLLRKIMNHKTCKNIPVIMM 58 (162)
Q Consensus 10 ~eal~~l~~~~~~~DlvllD~~mp~~~g---~~~~~~ir~~~~~~~~piI~l 58 (162)
++.++..++ ..+|+|+|...-.+... ..+.+.+-.. ..+||+++
T Consensus 96 ~~I~~~a~~--~~~dliV~G~~~~~~~~~~~Gs~~~~v~~~---~~~pVlvv 142 (143)
T 3fdx_A 96 DKILALAKS--LPADLVIIASHRPDITTYLLGSNAAAVVRH---AECSVLVV 142 (143)
T ss_dssp HHHHHHHHH--TTCSEEEEESSCTTCCSCSSCHHHHHHHHH---CSSEEEEE
T ss_pred HHHHHHHHH--hCCCEEEEeCCCCCCeeeeeccHHHHHHHh---CCCCEEEe
Confidence 344444555 78999999886322211 1233343322 46888875
No 409
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=37.18 E-value=68 Score=23.69 Aligned_cols=74 Identities=9% Similarity=0.009 Sum_probs=48.4
Q ss_pred HHHHHHHHhhCCCccEEEEcCC---------CCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHc--CCceE
Q 044790 10 LQAWKILEDLMDQIDLVLTEVL---------MPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSK--GAVYF 78 (162)
Q Consensus 10 ~eal~~l~~~~~~~DlvllD~~---------mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~--Ga~~~ 78 (162)
.+..+.+.. .|++++=.. ....-|..+++.+. ..+|||.... ....+.+.. |..++
T Consensus 223 ~~l~~~~~~----adv~v~ps~~~~~~~~~~~~E~~~~~~~EAma-----~G~PvI~s~~----~~~~e~~~~~~~~~g~ 289 (342)
T 2iuy_A 223 ERRLDLLAS----AHAVLAMSQAVTGPWGGIWCEPGATVVSEAAV-----SGTPVVGTGN----GCLAEIVPSVGEVVGY 289 (342)
T ss_dssp HHHHHHHHH----CSEEEECCCCCCCTTCSCCCCCCCHHHHHHHH-----TTCCEEECCT----TTHHHHGGGGEEECCS
T ss_pred HHHHHHHHh----CCEEEECCcccccccccccccCccHHHHHHHh-----cCCCEEEcCC----CChHHHhcccCCCceE
Confidence 344455544 577776443 13444566777764 4788885443 224455666 78899
Q ss_pred EeCCCCHHHHHHHHHHHHH
Q 044790 79 LVKPIRKNELQNLWQHVWR 97 (162)
Q Consensus 79 l~KP~~~~~L~~~i~~~l~ 97 (162)
+..| +.++|.+.|.+++.
T Consensus 290 ~~~~-d~~~l~~~i~~l~~ 307 (342)
T 2iuy_A 290 GTDF-APDEARRTLAGLPA 307 (342)
T ss_dssp SSCC-CHHHHHHHHHTSCC
T ss_pred EcCC-CHHHHHHHHHHHHH
Confidence 9999 99999999987643
No 410
>2ovl_A Putative racemase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.13A {Streptomyces coelicolor A3} PDB: 3ck5_A
Probab=37.01 E-value=88 Score=24.11 Aligned_cols=76 Identities=9% Similarity=-0.068 Sum_probs=47.3
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcC-CceEEeCCCCHH
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKG-AVYFLVKPIRKN 86 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~G-a~~~l~KP~~~~ 86 (162)
+..+++++++.. ..+++..+.--+|. +-++.+++|++.. .+||+.-=.........++++.| ++.+..|+...-
T Consensus 203 ~~~~a~~~~~~l-~~~~i~~iEqP~~~-~d~~~~~~l~~~~---~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~G 277 (371)
T 2ovl_A 203 TVDGAIRAARAL-APFDLHWIEEPTIP-DDLVGNARIVRES---GHTIAGGENLHTLYDFHNAVRAGSLTLPEPDVSNIG 277 (371)
T ss_dssp CHHHHHHHHHHH-GGGCCSEEECCSCT-TCHHHHHHHHHHH---CSCEEECTTCCSHHHHHHHHHHTCCSEECCCTTTTT
T ss_pred CHHHHHHHHHHH-HhcCCCEEECCCCc-ccHHHHHHHHhhC---CCCEEeCCCCCCHHHHHHHHHcCCCCEEeeCccccC
Confidence 456666666553 34555555544443 3367777887643 57877655555778888888877 556678886543
Q ss_pred HH
Q 044790 87 EL 88 (162)
Q Consensus 87 ~L 88 (162)
-+
T Consensus 278 Gi 279 (371)
T 2ovl_A 278 GY 279 (371)
T ss_dssp SH
T ss_pred CH
Confidence 33
No 411
>3ddm_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9284B, enolase family, PSI-2; 2.60A {Bordetella bronchiseptica}
Probab=37.00 E-value=66 Score=25.22 Aligned_cols=79 Identities=8% Similarity=0.015 Sum_probs=48.6
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCc-eEEeCCCCHH
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAV-YFLVKPIRKN 86 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~-~~l~KP~~~~ 86 (162)
+..+|+++++.. ..+++.+++--+|..+.++.+++|++. ..+||+.-=.-.......++++.|+- -+..|+...-
T Consensus 211 ~~~~A~~~~~~L-~~~~i~~iEeP~~~~d~~~~~~~l~~~---~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~k~~~~G 286 (392)
T 3ddm_A 211 DLPRARQMAQRL-GPAQLDWLEEPLRADRPAAEWAELAQA---APMPLAGGENIAGVAAFETALAARSLRVMQPDLAKWG 286 (392)
T ss_dssp CHHHHHHHHHHH-GGGCCSEEECCSCTTSCHHHHHHHHHH---CSSCEEECTTCCSHHHHHHHHHHTCEEEECCCTTTTT
T ss_pred CHHHHHHHHHHH-HHhCCCEEECCCCccchHHHHHHHHHh---cCCCEEeCCCCCCHHHHHHHHHcCCCCEEEeCcchhC
Confidence 456777766553 346666666544443326777888765 35787755445567778888887754 4566776544
Q ss_pred HHHH
Q 044790 87 ELQN 90 (162)
Q Consensus 87 ~L~~ 90 (162)
=|..
T Consensus 287 Git~ 290 (392)
T 3ddm_A 287 GFSG 290 (392)
T ss_dssp HHHH
T ss_pred CHHH
Confidence 4443
No 412
>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B*
Probab=36.96 E-value=70 Score=24.73 Aligned_cols=85 Identities=14% Similarity=0.138 Sum_probs=54.2
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEec-CCCH--H-------------------
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSS-HDSM--S------------------- 65 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~-~~~~--~------------------- 65 (162)
+..+.|+++.+. ...++|+|=.++.+..-.++++.+|... ...|||++-+ +... .
T Consensus 210 ~~~D~l~~~~~D-p~T~~I~l~gEi~g~~e~~~~~~~r~~~--~~KPVV~~kaGrs~~~~g~~aa~sHtGalag~~~~~a 286 (334)
T 3mwd_B 210 TFMDHVLRYQDT-PGVKMIVVLGEIGGTEEYKICRGIKEGR--LTKPIVCWCIGTCATMFSSEVQFGHAGACANQASETA 286 (334)
T ss_dssp CHHHHHHHHHTC-TTCCEEEEEEESSSSHHHHHHHHHHTTS--CCSCEEEEEECTTCC----------------CGGGSH
T ss_pred CHHHHHHHHhcC-CCCCEEEEEEecCChHHHHHHHHHHhhc--CCCCEEEEEcCCCcccccccccccchhhhccCCCccH
Confidence 578899998873 4577888766666665588899998744 5678877753 2222 0
Q ss_pred -HHHHHH-HcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 044790 66 -IVFKCL-SKGAVYFLVKPIRKNELQNLWQHVWRKC 99 (162)
Q Consensus 66 -~~~~a~-~~Ga~~~l~KP~~~~~L~~~i~~~l~~~ 99 (162)
....+| ++|+ ...-+.++|...++.++..-
T Consensus 287 ~~~~aa~~~aGv----~~v~~~~el~~~~~~~~~~l 318 (334)
T 3mwd_B 287 VAKNQALKEAGV----FVPRSFDELGEIIQSVYEDL 318 (334)
T ss_dssp HHHHHHHHHTTC----BCCSSGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC----eEcCCHHHHHHHHHHHHHHH
Confidence 112222 2343 23457788888888877654
No 413
>2pz0_A Glycerophosphoryl diester phosphodiesterase; glycerophosphodiester phosphodiesterase, T. tengcongensis; 1.91A {Thermoanaerobacter tengcongensis}
Probab=36.76 E-value=98 Score=22.34 Aligned_cols=47 Identities=13% Similarity=0.137 Sum_probs=32.1
Q ss_pred HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHH
Q 044790 38 IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNL 91 (162)
Q Consensus 38 ~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~ 91 (162)
-++++.+++ ..++|.+.|- .+...+.++++.|++++++- .++.+...
T Consensus 201 ~~~v~~~~~----~G~~v~~wTv-n~~~~~~~l~~~GvdgIiTD--~P~~~~~~ 247 (252)
T 2pz0_A 201 PELVEGCKK----NGVKLFPWTV-DRKEDMERMIKAGVDGIITD--DPETLINL 247 (252)
T ss_dssp HHHHHHHHH----TTCEECCBCC-CSHHHHHHHHHHTCSEEEES--CHHHHHHH
T ss_pred HHHHHHHHH----CCCEEEEECC-CCHHHHHHHHHcCCCEEEcC--CHHHHHHH
Confidence 345666655 4677777774 57778889999999999874 34444443
No 414
>1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A*
Probab=36.71 E-value=71 Score=24.92 Aligned_cols=80 Identities=15% Similarity=0.214 Sum_probs=46.5
Q ss_pred HHHHHHHHHhhCCCccEEEEc-----CCCC-----CCCHHHHHHHHHccCCCCCCcEEEEecCCC------HHHHHHHHH
Q 044790 9 GLQAWKILEDLMDQIDLVLTE-----VLMP-----CLSGIGLLRKIMNHKTCKNIPVIMMSSHDS------MSIVFKCLS 72 (162)
Q Consensus 9 ~~eal~~l~~~~~~~DlvllD-----~~mp-----~~~g~~~~~~ir~~~~~~~~piI~lt~~~~------~~~~~~a~~ 72 (162)
-..|++.+... ...+++||. +.-+ ++.. +..+++. .++||++.+++.. ......+..
T Consensus 229 i~~Ave~i~~~-GN~~viLceRG~~typ~~~~~~vdl~a---i~~lk~~---~~lpVi~dssHs~G~~~~v~~~a~AAvA 301 (350)
T 1vr6_A 229 FLLSAEYIANS-GNTKIILCERGIRTFEKATRNTLDISA---VPIIRKE---SHLPILVDPSHSGGRRDLVIPLSRAAIA 301 (350)
T ss_dssp HHHHHHHHHHT-TCCCEEEEECCBCCSCCSSSSBCCTTH---HHHHHHH---BSSCEEECHHHHHCSGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHC-CCCeEEEEeCCCCCCCCcChhhhhHHH---HHHHHHh---hCCCEEEeCCCCCcccchHHHHHHHHHH
Confidence 34567766652 457999983 2122 2333 3445443 3678887676542 355666778
Q ss_pred cCCceE-EeCC-------------CCHHHHHHHHHHH
Q 044790 73 KGAVYF-LVKP-------------IRKNELQNLWQHV 95 (162)
Q Consensus 73 ~Ga~~~-l~KP-------------~~~~~L~~~i~~~ 95 (162)
.||+++ |-|- +.+++|...++.+
T Consensus 302 ~GA~Gl~IE~H~~pd~al~D~~~sL~p~e~~~lv~~i 338 (350)
T 1vr6_A 302 VGAHGIIVEVHPEPEKALSDGKQSLDFELFKELVQEM 338 (350)
T ss_dssp HTCSEEEEEBCSCGGGCSSCGGGCBCHHHHHHHHHHH
T ss_pred hCCCEEEEEecCCcccCCCchhhcCCHHHHHHHHHHH
Confidence 899976 4443 3455666666554
No 415
>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A
Probab=36.65 E-value=77 Score=24.73 Aligned_cols=67 Identities=12% Similarity=0.135 Sum_probs=41.6
Q ss_pred HHHHHHHHHhhCCCccEEEEcCCC--CC---CCHHHHHHHHHccCCCCCCcEEEEecCC-CHHHHHHHHHcCCceEEeC
Q 044790 9 GLQAWKILEDLMDQIDLVLTEVLM--PC---LSGIGLLRKIMNHKTCKNIPVIMMSSHD-SMSIVFKCLSKGAVYFLVK 81 (162)
Q Consensus 9 ~~eal~~l~~~~~~~DlvllD~~m--p~---~~g~~~~~~ir~~~~~~~~piI~lt~~~-~~~~~~~a~~~Ga~~~l~K 81 (162)
...|++.+... .. +++||-+.- |- .--+..+..|++.. +++||. ++.+. .......|..+||+ +|-|
T Consensus 163 i~~Ave~i~~~-G~-~iiLlhc~s~Yp~~~~~~nL~ai~~lk~~f--~~lpVg-~sdHt~G~~~~~AAvAlGA~-iIEk 235 (349)
T 2wqp_A 163 IKKSVEIIREA-GV-PYALLHCTNIYPTPYEDVRLGGMNDLSEAF--PDAIIG-LSDHTLDNYACLGAVALGGS-ILER 235 (349)
T ss_dssp HHHHHHHHHHH-TC-CEEEEECCCCSSCCGGGCCTHHHHHHHHHC--TTSEEE-EECCSSSSHHHHHHHHHTCC-EEEE
T ss_pred HHHHHHHHHHc-CC-CEEEEeccCCCCCChhhcCHHHHHHHHHHC--CCCCEE-eCCCCCcHHHHHHHHHhCCC-EEEe
Confidence 45677777763 23 999985421 11 11134466666542 378986 56655 55667778889999 7776
No 416
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=36.60 E-value=88 Score=22.05 Aligned_cols=64 Identities=14% Similarity=0.172 Sum_probs=38.1
Q ss_pred EEEEcCHHHHHHHHHhhCCCccEEEEcCCCC---CCCHH-HHHHHHHccCCCCCCcEEEEecCCCHHHHHH
Q 044790 3 VIAVENGLQAWKILEDLMDQIDLVLTEVLMP---CLSGI-GLLRKIMNHKTCKNIPVIMMSSHDSMSIVFK 69 (162)
Q Consensus 3 v~~a~~~~eal~~l~~~~~~~DlvllD~~mp---~~~g~-~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~ 69 (162)
|..++ ....++.+...-..+++||+|=..- +++-. ..++.+.... +..++|++|+.-..+...+
T Consensus 158 Ivv~T-pg~l~~~l~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~--~~~~~il~SAT~~~~~~~~ 225 (235)
T 3llm_A 158 IMFCT-VGVLLRKLEAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAY--PEVRIVLMSATIDTSMFCE 225 (235)
T ss_dssp EEEEE-HHHHHHHHHHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHC--TTSEEEEEECSSCCHHHHH
T ss_pred EEEEC-HHHHHHHHHhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhC--CCCeEEEEecCCCHHHHHH
Confidence 34444 4455555654335799999996432 11211 3455555443 6788999999877766443
No 417
>3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A
Probab=36.40 E-value=1.2e+02 Score=22.01 Aligned_cols=56 Identities=11% Similarity=0.044 Sum_probs=42.8
Q ss_pred CccEEEEcCCCCCCC-HHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCC
Q 044790 22 QIDLVLTEVLMPCLS-GIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKP 82 (162)
Q Consensus 22 ~~DlvllD~~mp~~~-g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP 82 (162)
..++|-+|. .+.. ..++++++++.- ..+|+++=-.-..++.+.+++ .||+..+.-.
T Consensus 153 g~~~VYld~--sG~~~~~~~i~~i~~~~--~~~Pv~vGGGI~t~e~a~~~~-~gAD~VVVGS 209 (228)
T 3vzx_A 153 QLPIFYLEY--SGVLGDIEAVKKTKAVL--ETSTLFYGGGIKDAETAKQYA-EHADVIVVGN 209 (228)
T ss_dssp TCSEEEEEC--TTSCCCHHHHHHHHHHC--SSSEEEEESSCCSHHHHHHHH-TTCSEEEECT
T ss_pred CCCEEEecC--CCCcCCHHHHHHHHHhc--CCCCEEEeCCCCCHHHHHHHH-hCCCEEEECh
Confidence 478888888 3333 488899998752 368988777777888888887 7999998765
No 418
>3psh_A Protein HI_1472; substrate binding protein, periplasmic binding protein, MOLY binding protein, metal transport; 1.50A {Haemophilus influenzae} PDB: 3psa_A
Probab=36.08 E-value=1.2e+02 Score=22.47 Aligned_cols=39 Identities=23% Similarity=0.319 Sum_probs=26.3
Q ss_pred HHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCC
Q 044790 14 KILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHD 62 (162)
Q Consensus 14 ~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~ 62 (162)
|.+.. .+|||||..-.. .-+..++|++ ..+|++++....
T Consensus 78 E~i~~--l~PDlIi~~~~~----~~~~~~~L~~----~Gipvv~~~~~~ 116 (326)
T 3psh_A 78 ESLLA--LKPDVVFVTNYA----PSEMIKQISD----VNIPVVAISLRT 116 (326)
T ss_dssp HHHHH--TCCSEEEEETTC----CHHHHHHHHT----TTCCEEEECSCC
T ss_pred HHHHc--cCCCEEEEeCCC----ChHHHHHHHH----cCCCEEEEeccc
Confidence 45555 689999986432 1356777765 468999987653
No 419
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural genomics, PSI-2, protein structu initiative; 1.90A {Thermoplasma acidophilum}
Probab=36.07 E-value=84 Score=20.02 Aligned_cols=83 Identities=11% Similarity=0.058 Sum_probs=46.5
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCCCC-CCHHHHHHHHHccCCCCCCcEEEEecC--CCHH-HHHHHHHcCCceEEe---
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLMPC-LSGIGLLRKIMNHKTCKNIPVIMMSSH--DSMS-IVFKCLSKGAVYFLV--- 80 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~mp~-~~g~~~~~~ir~~~~~~~~piI~lt~~--~~~~-~~~~a~~~Ga~~~l~--- 80 (162)
...+|.+.+++ ...++=++++.... ++--.+.+.++... .|+++=.. .... .+......-...++.
T Consensus 27 ~a~eA~~~L~~--~Gi~v~vi~~r~~~P~d~~~l~~~~~~~~-----~vvvvE~~~~G~l~~~i~~~~~~~~~~~i~~~~ 99 (118)
T 3ju3_A 27 PILDVIEDLKE--EGISANLLYLKMFSPFPTEFVKNVLSSAN-----LVIDVESNYTAQAAQMIKLYTGIDIKNKILKYN 99 (118)
T ss_dssp HHHHHHHHHHH--TTCCEEEEEECSSCSCCHHHHHHHHTTCS-----CCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCBT
T ss_pred HHHHHHHHHHH--CCCceEEEEECeEecCCHHHHHHHHcCCC-----EEEEEECCCCCcHHHHHHHHcCCCceeEEeeeC
Confidence 34566777777 66788888876543 45444555554321 23333221 1222 233232222234555
Q ss_pred -CCCCHHHHHHHHHHHHH
Q 044790 81 -KPIRKNELQNLWQHVWR 97 (162)
Q Consensus 81 -KP~~~~~L~~~i~~~l~ 97 (162)
.|+.++++.+.|+.++.
T Consensus 100 G~~~~~~ei~~~i~~~~~ 117 (118)
T 3ju3_A 100 GRHMTEDEILKSAKEILN 117 (118)
T ss_dssp TBCCCHHHHHHHHHHHHH
T ss_pred CeeCCHHHHHHHHHHHhh
Confidence 48999999999998763
No 420
>4e4u_A Mandalate racemase/muconate lactonizing enzyme; mandelate racemase, aldolase, structural genomics, biology; 1.35A {Unidentified}
Probab=36.05 E-value=76 Score=25.07 Aligned_cols=73 Identities=16% Similarity=0.171 Sum_probs=44.7
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCC-ceEEeCCCCH
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGA-VYFLVKPIRK 85 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga-~~~l~KP~~~ 85 (162)
+..+|+++++.. ..+++..+.--+|..+ ++.+++|++. ..+||+.-=.........++++.|+ +-+..|+...
T Consensus 213 ~~~~A~~~~~~L-~~~~i~~iEeP~~~~d-~~~~~~l~~~---~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~d~~~~ 286 (412)
T 4e4u_A 213 VPSSAIRLAKRL-EKYDPLWFEEPVPPGQ-EEAIAQVAKH---TSIPIATGERLTTKYEFHKLLQAGGASILQLNVARV 286 (412)
T ss_dssp CHHHHHHHHHHH-GGGCCSEEECCSCSSC-HHHHHHHHHT---CSSCEEECTTCCHHHHHHHHHHTTCCSEECCCTTTT
T ss_pred CHHHHHHHHHHh-hhcCCcEEECCCChhh-HHHHHHHHhh---CCCCEEecCccCCHHHHHHHHHcCCCCEEEeCcccc
Confidence 456677666553 3456666665454333 6777888764 3677765434445667778888875 4556777654
No 421
>1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A*
Probab=35.99 E-value=31 Score=24.49 Aligned_cols=73 Identities=7% Similarity=-0.031 Sum_probs=43.7
Q ss_pred ccEEE---EcCCCCCCCH-HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe-----CCCCHHHHHHHHH
Q 044790 23 IDLVL---TEVLMPCLSG-IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV-----KPIRKNELQNLWQ 93 (162)
Q Consensus 23 ~Dlvl---lD~~mp~~~g-~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~-----KP~~~~~L~~~i~ 93 (162)
.|+++ ..-.-|+.+| .+-++.+|+... ..+||++ ++.-..+...+++++|++.++. +.-++.+....++
T Consensus 131 ~~~vl~~a~~~~~~G~~g~~~~i~~lr~~~~-~~~~i~v-~GGI~~~~~~~~~~aGad~ivvG~~I~~a~dp~~~~~~~~ 208 (216)
T 1q6o_A 131 GQVVYHRSRDAQAAGVAWGEADITAIKRLSD-MGFKVTV-TGGLALEDLPLFKGIPIHVFIAGRSIRDAASPVEAARQFK 208 (216)
T ss_dssp CEEEEECCHHHHHTTCCCCHHHHHHHHHHHH-TTCEEEE-ESSCCGGGGGGGTTSCCSEEEESHHHHTSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHhcC-CCCcEEE-ECCcChhhHHHHHHcCCCEEEEeehhcCCCCHHHHHHHHH
Confidence 45555 2223377777 677777776431 2455554 4445567788899999998754 3334555555555
Q ss_pred HHHH
Q 044790 94 HVWR 97 (162)
Q Consensus 94 ~~l~ 97 (162)
+.+.
T Consensus 209 ~~i~ 212 (216)
T 1q6o_A 209 RSIA 212 (216)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 422
>1mdl_A Mandelate racemase; isomerase, mandelate pathway, magnesium; HET: RMN SMN; 1.85A {Pseudomonas aeruginosa} SCOP: c.1.11.2 d.54.1.1 PDB: 1mdr_A* 3uxk_A* 3uxl_A* 1dtn_A* 1mra_A* 2mnr_A 1mns_A
Probab=35.98 E-value=67 Score=24.62 Aligned_cols=78 Identities=19% Similarity=0.118 Sum_probs=46.2
Q ss_pred HHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcC-CceEEeCCCCHHH
Q 044790 9 GLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKG-AVYFLVKPIRKNE 87 (162)
Q Consensus 9 ~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~G-a~~~l~KP~~~~~ 87 (162)
..+++++++.. ..+++..+.--+|. +-++.+++|++. ..+||+.-=.........++++.| ++.+..|+...--
T Consensus 202 ~~~a~~~~~~l-~~~~i~~iE~P~~~-~~~~~~~~l~~~---~~iPI~~de~~~~~~~~~~~i~~~~~d~v~ik~~~~GG 276 (359)
T 1mdl_A 202 VPAAIKRSQAL-QQEGVTWIEEPTLQ-HDYEGHQRIQSK---LNVPVQMGENWLGPEEMFKALSIGACRLAMPDAMKIGG 276 (359)
T ss_dssp HHHHHHHHHHH-HHHTCSCEECCSCT-TCHHHHHHHHHT---CSSCEEECTTCCSHHHHHHHHHTTCCSEECCBTTTTTH
T ss_pred HHHHHHHHHHH-HHhCCCeEECCCCh-hhHHHHHHHHHh---CCCCEEeCCCCCCHHHHHHHHHcCCCCEEeecchhhCC
Confidence 45555555432 22334334433332 346777788764 368877655555778888888876 6666788876544
Q ss_pred HHHH
Q 044790 88 LQNL 91 (162)
Q Consensus 88 L~~~ 91 (162)
+...
T Consensus 277 i~~~ 280 (359)
T 1mdl_A 277 VTGW 280 (359)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 423
>3skv_A SSFX3; jelly roll, GDSL/SGNH fold, alpha/beta hydrolase fold, trans; 2.49A {Streptomyces SP}
Probab=35.93 E-value=25 Score=27.68 Aligned_cols=46 Identities=20% Similarity=0.229 Sum_probs=29.4
Q ss_pred HHHHHhhCCCccEEEEcCCCC----CC--CH-----HHHHHHHHccCCCCCCcEEEEecCC
Q 044790 13 WKILEDLMDQIDLVLTEVLMP----CL--SG-----IGLLRKIMNHKTCKNIPVIMMSSHD 62 (162)
Q Consensus 13 l~~l~~~~~~~DlvllD~~mp----~~--~g-----~~~~~~ir~~~~~~~~piI~lt~~~ 62 (162)
.+.+.. .+||+|++.+-.- +. .- -.+++.||+.. +.++||+++...
T Consensus 237 ~~~l~~--~~pdlVvI~lGtND~~~~~~~~~~~~~l~~li~~ir~~~--P~a~Illv~p~~ 293 (385)
T 3skv_A 237 ARLIRD--LPADLISLRVGTSNFMDGDGFVDFPANLVGFVQIIRERH--PLTPIVLGSSVY 293 (385)
T ss_dssp HHHHHH--SCCSEEEEEESHHHHTTTCCTTTHHHHHHHHHHHHHTTC--SSSCEEEEECCC
T ss_pred HHHHhc--cCCCEEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHHHC--CCCcEEEEcCCC
Confidence 344555 6899999865211 11 11 23677888765 789999998653
No 424
>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1
Probab=35.87 E-value=1.3e+02 Score=22.04 Aligned_cols=56 Identities=11% Similarity=0.042 Sum_probs=42.4
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCC
Q 044790 23 IDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKP 82 (162)
Q Consensus 23 ~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP 82 (162)
..+|-++. .....-.+++++|++.. ..+|+++=-.-...+.+.++++ ||+..+.=.
T Consensus 156 ~~~VYl~s-~G~~~~~~~i~~i~~~~--~~~Pv~vGgGI~t~e~a~~~~~-gAd~VIVGS 211 (240)
T 1viz_A 156 LPIFYLEY-SGVLGDIEAVKKTKAVL--ETSTLFYGGGIKDAETAKQYAE-HADVIVVGN 211 (240)
T ss_dssp CSEEEEEC-TTSCCCHHHHHHHHHTC--SSSEEEEESSCCSHHHHHHHHT-TCSEEEECT
T ss_pred CCEEEEeC-CCccChHHHHHHHHHhc--CCCCEEEEeccCCHHHHHHHHh-CCCEEEECh
Confidence 46776776 43334478999998752 3789887777788899999888 999998765
No 425
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=35.86 E-value=84 Score=21.52 Aligned_cols=48 Identities=10% Similarity=0.198 Sum_probs=28.0
Q ss_pred HHHHHHhhCCCccEEEE--cCCCCCCCHH---HHHHHHHccCCCCCCcEEEEecCCCHH
Q 044790 12 AWKILEDLMDQIDLVLT--EVLMPCLSGI---GLLRKIMNHKTCKNIPVIMMSSHDSMS 65 (162)
Q Consensus 12 al~~l~~~~~~~Dlvll--D~~mp~~~g~---~~~~~ir~~~~~~~~piI~lt~~~~~~ 65 (162)
.++.+.+ ..+|+||+ |+.-.+...- ++++.+++ ..+|++++.++.+..
T Consensus 24 ~~~~~~~--~~~D~vi~~GDl~~~~~~~~~~~~~~~~l~~----~~~pv~~v~GNHD~~ 76 (228)
T 1uf3_A 24 FVKLAPD--TGADAIALIGNLMPKAAKSRDYAAFFRILSE----AHLPTAYVPGPQDAP 76 (228)
T ss_dssp HHTHHHH--HTCSEEEEESCSSCTTCCHHHHHHHHHHHGG----GCSCEEEECCTTSCS
T ss_pred HHHHHhh--cCCCEEEECCCCCCCCCCHHHHHHHHHHHHh----cCCcEEEECCCCCch
Confidence 3444444 47999887 5543332222 35566654 246888888876653
No 426
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=35.78 E-value=54 Score=25.07 Aligned_cols=27 Identities=19% Similarity=0.154 Sum_probs=22.6
Q ss_pred cCCceEEeCCCCHHHHHHHHHHHHHhc
Q 044790 73 KGAVYFLVKPIRKNELQNLWQHVWRKC 99 (162)
Q Consensus 73 ~Ga~~~l~KP~~~~~L~~~i~~~l~~~ 99 (162)
.+..-+..+|++.+++...|+..+...
T Consensus 188 ~~~~~i~F~pYt~~el~~Il~~Rl~~~ 214 (318)
T 3te6_A 188 AHFTEIKLNKVDKNELQQMIITRLKSL 214 (318)
T ss_dssp TTEEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred CCceEEEeCCCCHHHHHHHHHHHHHhh
Confidence 455678899999999999999888764
No 427
>2nql_A AGR_PAT_674P, isomerase/lactonizing enzyme; enolase, structural genomics, protein structure initiative, nysgxrc; 1.80A {Agrobacterium tumefaciens str} PDB: 4dn1_A
Probab=35.74 E-value=81 Score=24.51 Aligned_cols=76 Identities=9% Similarity=0.104 Sum_probs=47.1
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcC-CceEEeCCCCHH
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKG-AVYFLVKPIRKN 86 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~G-a~~~l~KP~~~~ 86 (162)
+..+++++++.. ..+++..+.--++. +-++.+++|++. ..+||+.-=.........++++.| ++.+..||.. -
T Consensus 220 ~~~~a~~~~~~l-~~~~i~~iEqP~~~-~d~~~~~~l~~~---~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~~-G 293 (388)
T 2nql_A 220 TPERALELIAEM-QPFDPWFAEAPVWT-EDIAGLEKVSKN---TDVPIAVGEEWRTHWDMRARIERCRIAIVQPEMGH-K 293 (388)
T ss_dssp CHHHHHHHHHHH-GGGCCSCEECCSCT-TCHHHHHHHHTS---CCSCEEECTTCCSHHHHHHHHTTSCCSEECCCHHH-H
T ss_pred CHHHHHHHHHHH-hhcCCCEEECCCCh-hhHHHHHHHHhh---CCCCEEEeCCcCCHHHHHHHHHcCCCCEEEecCCC-C
Confidence 456666666553 33454444443443 347778888764 368877655555778888899887 5556677764 4
Q ss_pred HHH
Q 044790 87 ELQ 89 (162)
Q Consensus 87 ~L~ 89 (162)
-+.
T Consensus 294 Git 296 (388)
T 2nql_A 294 GIT 296 (388)
T ss_dssp CHH
T ss_pred CHH
Confidence 443
No 428
>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*
Probab=35.70 E-value=1.2e+02 Score=23.09 Aligned_cols=63 Identities=14% Similarity=0.146 Sum_probs=42.9
Q ss_pred HHHHHHHhhCCCccEEEEcCC------CCCC--CHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcC-CceE
Q 044790 11 QAWKILEDLMDQIDLVLTEVL------MPCL--SGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKG-AVYF 78 (162)
Q Consensus 11 eal~~l~~~~~~~DlvllD~~------mp~~--~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~G-a~~~ 78 (162)
+..+.+.+ ..+|.|-+-.. .|.. ..+++++.|++.- .+|||........+.+.++++.| +|..
T Consensus 233 ~~a~~l~~--~Gvd~i~v~~~~~~~~~~~~~~~~~~~~~~~ir~~~---~iPVi~~Ggi~s~~~a~~~l~~G~aD~V 304 (338)
T 1z41_A 233 GFAKWMKE--QGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQA---DMATGAVGMITDGSMAEEILQNGRADLI 304 (338)
T ss_dssp HHHHHHHH--TTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHH---CCEEEECSSCCSHHHHHHHHHTTSCSEE
T ss_pred HHHHHHHH--cCCCEEEEecCccccCCCCCCccchHHHHHHHHHHC---CCCEEEECCCCCHHHHHHHHHcCCceEE
Confidence 34444555 56787765321 1222 2468888898753 78999888777899999999999 6654
No 429
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=35.66 E-value=1.3e+02 Score=22.23 Aligned_cols=39 Identities=18% Similarity=0.142 Sum_probs=30.3
Q ss_pred HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeC
Q 044790 38 IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVK 81 (162)
Q Consensus 38 ~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~K 81 (162)
.++++++|+. ..+||++=..-..++.+.+. .|||+.+.=
T Consensus 191 ~~~v~~vr~~---~~~Pv~vGfGI~t~e~a~~~--~~ADgVIVG 229 (271)
T 1ujp_A 191 KDLVRRIKAR---TALPVAVGFGVSGKATAAQA--AVADGVVVG 229 (271)
T ss_dssp HHHHHHHHTT---CCSCEEEESCCCSHHHHHHH--TTSSEEEEC
T ss_pred HHHHHHHHhh---cCCCEEEEcCCCCHHHHHHh--cCCCEEEEC
Confidence 4678888875 37898877777778888885 999999864
No 430
>3fvv_A Uncharacterized protein; unknown function, structural genomics, PSI,MCSG, protein STR initiative, midwest center for structural genomics; 2.10A {Bordetella pertussis}
Probab=35.54 E-value=74 Score=21.85 Aligned_cols=38 Identities=8% Similarity=0.116 Sum_probs=25.8
Q ss_pred HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEE
Q 044790 38 IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFL 79 (162)
Q Consensus 38 ~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l 79 (162)
.++++.++. ..+++.++|+.........+-..|++.++
T Consensus 98 ~~~l~~l~~----~g~~~~ivS~~~~~~~~~~~~~~g~~~~~ 135 (232)
T 3fvv_A 98 VDVVRGHLA----AGDLCALVTATNSFVTAPIARAFGVQHLI 135 (232)
T ss_dssp HHHHHHHHH----TTCEEEEEESSCHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHH----CCCEEEEEeCCCHHHHHHHHHHcCCCEEE
Confidence 577888876 46899999986654444444557887554
No 431
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=35.42 E-value=68 Score=23.94 Aligned_cols=55 Identities=5% Similarity=-0.135 Sum_probs=34.9
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHH
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVF 68 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~ 68 (162)
+....+..+.. ..+|+|++... +.+...+++.+++.. ..+|++............
T Consensus 192 d~~~~~~~l~~--~~~d~v~~~~~--~~~a~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~ 246 (366)
T 3td9_A 192 DFSAQLSVAMS--FNPDAIYITGY--YPEIALISRQARQLG--FTGYILAGDGADAPELIE 246 (366)
T ss_dssp CCHHHHHHHHH--TCCSEEEECSC--HHHHHHHHHHHHHTT--CCSEEEECGGGCSTHHHH
T ss_pred cHHHHHHHHHh--cCCCEEEEccc--hhHHHHHHHHHHHcC--CCceEEeeCCcCCHHHHH
Confidence 45566777777 78999998432 334566778887765 467776554544444433
No 432
>3go2_A Putative L-alanine-DL-glutamate epimerase; structural genomics, isomerase, PSI-2; 1.70A {Burkholderia xenovorans} PDB: 2oo6_A 3sn0_A 3sn1_A* 3sn4_A*
Probab=35.20 E-value=77 Score=24.95 Aligned_cols=70 Identities=20% Similarity=0.153 Sum_probs=44.5
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCC-ceEEeCCCC
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGA-VYFLVKPIR 84 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga-~~~l~KP~~ 84 (162)
+..+|+++++.. ..+++..+.. |- .-++.+++|++. ..+||+.-=.........++++.|+ +-+..|+..
T Consensus 225 ~~~~A~~~~~~L-~~~~i~~iE~--P~-~d~~~~~~l~~~---~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~~k~~~ 295 (409)
T 3go2_A 225 KPEGYLKILREL-ADFDLFWVEI--DS-YSPQGLAYVRNH---SPHPISSCETLFGIREFKPFFDANAVDVAIVDTIW 295 (409)
T ss_dssp CHHHHHHHHHHT-TTSCCSEEEC--CC-SCHHHHHHHHHT---CSSCEEECTTCCHHHHHHHHHHTTCCSEEEECHHH
T ss_pred CHHHHHHHHHHH-hhcCCeEEEe--Cc-CCHHHHHHHHhh---CCCCEEeCCCcCCHHHHHHHHHhCCCCEEEeCCCC
Confidence 456777777764 4566666663 43 346667888765 3578775444445667788888875 555667643
No 433
>3mqt_A Mandelate racemase/muconate lactonizing protein; PSI-II, NYSGXRC, muconate lactonizing EN structural genomics, protein structure initiative; 2.10A {Shewanella pealeana}
Probab=35.02 E-value=55 Score=25.68 Aligned_cols=73 Identities=15% Similarity=0.006 Sum_probs=45.8
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcC-CceEEeCCCCH
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKG-AVYFLVKPIRK 85 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~G-a~~~l~KP~~~ 85 (162)
+..+|+++++.. ..+++.++.--+|.. -++.+++|++. ..+||+.-=.-.......++++.| ++-+..|+...
T Consensus 213 ~~~~A~~~~~~L-~~~~i~~iEeP~~~~-~~~~~~~l~~~---~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k~~~~ 286 (394)
T 3mqt_A 213 DWQKARWTFRQL-EDIDLYFIEACLQHD-DLIGHQKLAAA---INTRLCGAEMSTTRFEAQEWLEKTGISVVQSDYNRC 286 (394)
T ss_dssp CHHHHHHHHHHT-GGGCCSEEESCSCTT-CHHHHHHHHHH---SSSEEEECTTCCHHHHHHHHHHHHCCSEECCCTTTS
T ss_pred CHHHHHHHHHHH-hhcCCeEEECCCCcc-cHHHHHHHHhh---CCCCEEeCCCcCCHHHHHHHHHcCCCCeEecCcccc
Confidence 567777777763 446666666545432 36677888765 357776544444566777888776 55566777553
No 434
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Probab=34.35 E-value=8.4 Score=28.09 Aligned_cols=40 Identities=15% Similarity=0.287 Sum_probs=0.0
Q ss_pred HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 38 IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 38 ~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
+++++++++. ..+|||....-...+.+.++++.|+++.+.
T Consensus 189 ~~~~~~i~~~---~~iPvia~GGI~~~~d~~~~~~~Gad~v~v 228 (247)
T 3tdn_A 189 TEMIRFVRPL---TTLPIIASGGAGKMEHFLEAFLRGADKVSI 228 (247)
T ss_dssp -------------------------------------------
T ss_pred HHHHHHHHHh---CCCCEEEECCCCCHHHHHHHHHcCCcHhhc
Confidence 4667777653 478999888877788888999999988753
No 435
>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A*
Probab=34.27 E-value=1.6e+02 Score=22.81 Aligned_cols=39 Identities=18% Similarity=0.201 Sum_probs=29.2
Q ss_pred HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 38 IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 38 ~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
++.+++||+.. .+||++=.. ...+....+.+.|++.+..
T Consensus 218 ~~~i~~lr~~~---~~PvivK~v-~~~e~a~~a~~~Gad~I~v 256 (368)
T 2nli_A 218 PRDIEEIAGHS---GLPVFVKGI-QHPEDADMAIKRGASGIWV 256 (368)
T ss_dssp HHHHHHHHHHS---SSCEEEEEE-CSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHc---CCCEEEEcC-CCHHHHHHHHHcCCCEEEE
Confidence 55678887753 678886432 4578889999999999987
No 436
>1rvk_A Isomerase/lactonizing enzyme; enolase superfamily, MR.GI-17937161, NYSGXRC, target T1522, structural genomics, PSI; 1.70A {Agrobacterium tumefaciens} SCOP: c.1.11.2 d.54.1.1
Probab=34.26 E-value=80 Score=24.40 Aligned_cols=73 Identities=12% Similarity=0.073 Sum_probs=45.2
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCC-HHHHHHHHHcC-CceEEeCCCCH
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDS-MSIVFKCLSKG-AVYFLVKPIRK 85 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~-~~~~~~a~~~G-a~~~l~KP~~~ 85 (162)
+..+++++++.. .++++..+.--+|. +-++.+++|++. ..+||+.-=.... .....++++.| ++-+..||...
T Consensus 212 ~~~~a~~~~~~l-~~~~i~~iE~P~~~-~~~~~~~~l~~~---~~iPIa~dE~~~~~~~~~~~~i~~~~~d~v~ik~~~~ 286 (382)
T 1rvk_A 212 SRTDALALGRGL-EKLGFDWIEEPMDE-QSLSSYKWLSDN---LDIPVVGPESAAGKHWHRAEWIKAGACDILRTGVNDV 286 (382)
T ss_dssp CHHHHHHHHHHH-HTTTCSEEECCSCT-TCHHHHHHHHHH---CSSCEEECSSCSSHHHHHHHHHHTTCCSEEEECHHHH
T ss_pred CHHHHHHHHHHH-HhcCCCEEeCCCCh-hhHHHHHHHHhh---CCCCEEEeCCccCcHHHHHHHHHcCCCCEEeeCchhc
Confidence 346666665543 34555555544443 336777788764 3578776555556 77888888887 56667787543
No 437
>1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A*
Probab=34.19 E-value=1.6e+02 Score=22.92 Aligned_cols=69 Identities=20% Similarity=0.213 Sum_probs=47.1
Q ss_pred EcCHHHHHHHHHhhCCCccEEEEcCC----C-CCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 6 VENGLQAWKILEDLMDQIDLVLTEVL----M-PCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 6 a~~~~eal~~l~~~~~~~DlvllD~~----m-p~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
+.+.++|....+ ...|.|.+.-. + .+...++++..++..- ..|||.-..-.....+.+++..||+....
T Consensus 233 v~t~e~a~~a~~---aGad~I~vs~~gg~~~d~~~~~~~~l~~v~~~~---~~pVia~GGI~~~~dv~kal~~GAdaV~i 306 (380)
T 1p4c_A 233 LLSAEDADRCIA---EGADGVILSNHGGRQLDCAISPMEVLAQSVAKT---GKPVLIDSGFRRGSDIVKALALGAEAVLL 306 (380)
T ss_dssp ECCHHHHHHHHH---TTCSEEEECCGGGTSCTTCCCGGGTHHHHHHHH---CSCEEECSSCCSHHHHHHHHHTTCSCEEE
T ss_pred cCcHHHHHHHHH---cCCCEEEEcCCCCCcCCCCcCHHHHHHHHHHHc---CCeEEEECCCCCHHHHHHHHHhCCcHhhe
Confidence 456777766555 47898888321 1 0112356777776532 34899888888899999999999998743
No 438
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A*
Probab=34.11 E-value=55 Score=22.94 Aligned_cols=26 Identities=23% Similarity=0.225 Sum_probs=23.6
Q ss_pred EEEEEcCHHHHHHHHHhhCCCccEEEEc
Q 044790 2 AVIAVENGLQAWKILEDLMDQIDLVLTE 29 (162)
Q Consensus 2 ~v~~a~~~~eal~~l~~~~~~~DlvllD 29 (162)
++..+.+..++++.+.. .++|++++|
T Consensus 146 ~i~~~~~~~~~~~~l~~--GrvD~~~~d 171 (243)
T 4h5g_A 146 QLTSLTNMGEAVNELQA--GKIDAVHMD 171 (243)
T ss_dssp EEEEESCHHHHHHHHHH--TSCSEEEEE
T ss_pred eeEEeCCHHHHHHHHHc--CCccEEEec
Confidence 56788999999999999 899999998
No 439
>2otd_A Glycerophosphodiester phosphodiesterase; structural genomics PSI-2, protein structure initiative, midwest center for STR genomics, hydrolase; 2.60A {Shigella flexneri}
Probab=34.08 E-value=1.3e+02 Score=21.56 Aligned_cols=38 Identities=5% Similarity=0.109 Sum_probs=25.1
Q ss_pred HHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeC
Q 044790 39 GLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVK 81 (162)
Q Consensus 39 ~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~K 81 (162)
++++.++. ..++|.+.|- .+...+.++++.|++++++-
T Consensus 198 ~~v~~~~~----~G~~v~~wTv-n~~~~~~~l~~~GvdgI~TD 235 (247)
T 2otd_A 198 ARVMQLKD----AGLRILVYTV-NKPQHAAELLRWGVDCICTD 235 (247)
T ss_dssp HHHHHHHH----TTCEEEEECC-CCHHHHHHHHHHTCSEEEES
T ss_pred HHHHHHHH----CCCEEEEEcc-CCHHHHHHHHHcCCCEEEeC
Confidence 44555544 3567777764 45667777888888887764
No 440
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Probab=34.07 E-value=1.8e+02 Score=23.26 Aligned_cols=83 Identities=14% Similarity=0.235 Sum_probs=47.0
Q ss_pred HHHHHHHHHhhCCCccEEEEcCCCCCC-----C--HHHHHHHHHccCCCCCCcEEEEe-cCCCHHHHHHHH-HcCCceEE
Q 044790 9 GLQAWKILEDLMDQIDLVLTEVLMPCL-----S--GIGLLRKIMNHKTCKNIPVIMMS-SHDSMSIVFKCL-SKGAVYFL 79 (162)
Q Consensus 9 ~~eal~~l~~~~~~~DlvllD~~mp~~-----~--g~~~~~~ir~~~~~~~~piI~lt-~~~~~~~~~~a~-~~Ga~~~l 79 (162)
..++++.+.+. ..+|.||+.+..+.. + .-.+++.+++.. ...||+++. .....+...+.+ +.|+--|
T Consensus 356 ~~~al~~~l~d-p~vd~vlv~~~~~~~Gg~~~~~~a~~i~~al~~~~--~~kPvvv~~~~g~~~~~~~~~L~~~Gip~~- 431 (457)
T 2csu_A 356 YYRTAKLLLQD-PNVDMLIAICVVPTFAGMTLTEHAEGIIRAVKEVN--NEKPVLAMFMAGYVSEKAKELLEKNGIPTY- 431 (457)
T ss_dssp HHHHHHHHHHS-TTCSEEEEEEECCCSTTCCSSHHHHHHHHHHHHHC--CCCCEEEEEECTTTTHHHHHHHHTTTCCEE-
T ss_pred HHHHHHHHhcC-CCCCEEEEEccccccccCCchhHHHHHHHHHHHhc--CCCCEEEEeCCCcchHHHHHHHHhCCCCcc-
Confidence 45677776652 579999998864421 2 233566666533 356777743 222233334444 5676666
Q ss_pred eCCCCHHHHHHHHHHHHHh
Q 044790 80 VKPIRKNELQNLWQHVWRK 98 (162)
Q Consensus 80 ~KP~~~~~L~~~i~~~l~~ 98 (162)
.++++-...+..+.+.
T Consensus 432 ---~spe~Av~al~~l~~~ 447 (457)
T 2csu_A 432 ---ERPEDVASAAYALVEQ 447 (457)
T ss_dssp ---SSHHHHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHHHHH
Confidence 3556666666665554
No 441
>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A*
Probab=33.99 E-value=1.7e+02 Score=22.84 Aligned_cols=68 Identities=18% Similarity=0.114 Sum_probs=45.7
Q ss_pred HHHHHHHHHhhCCCccEEEEcCCC------CCC-C-----HHHHHHHHHccCCCCCCcEEEE--ecCCCHHHHHHHHHcC
Q 044790 9 GLQAWKILEDLMDQIDLVLTEVLM------PCL-S-----GIGLLRKIMNHKTCKNIPVIMM--SSHDSMSIVFKCLSKG 74 (162)
Q Consensus 9 ~~eal~~l~~~~~~~DlvllD~~m------p~~-~-----g~~~~~~ir~~~~~~~~piI~l--t~~~~~~~~~~a~~~G 74 (162)
.+.+.+.++. ...|.+.+++.. |.. . -++.+++|++. ..+||++= ......+.+..+.++|
T Consensus 137 ~~~~~~av~~--~~a~al~Ihln~~~~~~~p~g~~~~~~~~~~~i~~i~~~---~~vPVivK~vG~g~s~~~A~~l~~aG 211 (368)
T 3vkj_A 137 LKEFQDAIQM--IEADAIAVHLNPAQEVFQPEGEPEYQIYALEKLRDISKE---LSVPIIVKESGNGISMETAKLLYSYG 211 (368)
T ss_dssp HHHHHHHHHH--TTCSEEEEECCHHHHHHSSSCCCBCBTHHHHHHHHHHTT---CSSCEEEECSSSCCCHHHHHHHHHTT
T ss_pred HHHHHHHHHH--hcCCCeEEEecchhhhhCCCCCchhhHHHHHHHHHHHHH---cCCCEEEEeCCCCCCHHHHHHHHhCC
Confidence 3555555554 456888887742 321 1 46788888864 47899874 2223578899999999
Q ss_pred CceEEeC
Q 044790 75 AVYFLVK 81 (162)
Q Consensus 75 a~~~l~K 81 (162)
++.+..-
T Consensus 212 ad~I~V~ 218 (368)
T 3vkj_A 212 IKNFDTS 218 (368)
T ss_dssp CCEEECC
T ss_pred CCEEEEe
Confidence 9999873
No 442
>3n1u_A Hydrolase, HAD superfamily, subfamily III A; structural genomics, PSI-2; 1.80A {Legionella pneumophila} SCOP: c.108.1.0
Probab=33.76 E-value=1.1e+02 Score=20.81 Aligned_cols=37 Identities=14% Similarity=0.256 Sum_probs=28.6
Q ss_pred HHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeC
Q 044790 41 LRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVK 81 (162)
Q Consensus 41 ~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~K 81 (162)
++.++. ..+++.++|..........+-..|+..|+..
T Consensus 55 l~~L~~----~g~~~~ivTn~~~~~~~~~l~~lgl~~~~~~ 91 (191)
T 3n1u_A 55 LKLLMA----AGIQVAIITTAQNAVVDHRMEQLGITHYYKG 91 (191)
T ss_dssp HHHHHH----TTCEEEEECSCCSHHHHHHHHHHTCCEEECS
T ss_pred HHHHHH----CCCeEEEEeCcChHHHHHHHHHcCCccceeC
Confidence 677776 4689999998877776666777899988763
No 443
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=33.73 E-value=96 Score=25.99 Aligned_cols=68 Identities=10% Similarity=0.157 Sum_probs=45.0
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCCCCC-C-HHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHc-----CCceEEe
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLMPCL-S-GIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSK-----GAVYFLV 80 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~mp~~-~-g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~-----Ga~~~l~ 80 (162)
..++.++.+.+ ..+|+|.+...+... . --++++.|++.. ..+||++-......+... -+. |++.|..
T Consensus 137 P~e~iv~aa~~--~~~diVgLS~l~t~~~~~m~~~i~~Lr~~g--~~i~ViVGGa~~~~~~a~--~~i~p~~~GAD~ya~ 210 (579)
T 3bul_A 137 PAEKILRTAKE--VNADLIGLSGLITPSLDEMVNVAKEMERQG--FTIPLLIGGATTSKAHTA--VKIEQNYSGPTVYVQ 210 (579)
T ss_dssp CHHHHHHHHHH--HTCSEEEEECCSTHHHHHHHHHHHHHHHTT--CCSCEEEESTTCCHHHHH--HHTGGGCSSCEEECC
T ss_pred CHHHHHHHHHH--cCCCEEEEEecCCCCHHHHHHHHHHHHHcC--CCCeEEEEccccchhhhh--hhhhhcccCCeEEEC
Confidence 56777888888 789999999877431 1 123567777754 578887666655555432 123 8888764
Q ss_pred C
Q 044790 81 K 81 (162)
Q Consensus 81 K 81 (162)
.
T Consensus 211 D 211 (579)
T 3bul_A 211 N 211 (579)
T ss_dssp S
T ss_pred C
Confidence 4
No 444
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=33.61 E-value=1.3e+02 Score=23.54 Aligned_cols=40 Identities=23% Similarity=0.273 Sum_probs=24.8
Q ss_pred EEcCHHHHHHHHHhhCCCccEEEEcCCC-CC------CCHHHHHHHH
Q 044790 5 AVENGLQAWKILEDLMDQIDLVLTEVLM-PC------LSGIGLLRKI 44 (162)
Q Consensus 5 ~a~~~~eal~~l~~~~~~~DlvllD~~m-p~------~~g~~~~~~i 44 (162)
...|+.+.++.+.+....||+||+|.-- |. ....++.+.+
T Consensus 250 i~~Da~~~L~~~~~~~~~fDvII~D~~d~P~~~~p~~L~t~eFy~~~ 296 (364)
T 2qfm_A 250 LIEDCIPVLKRYAKEGREFDYVINDLTAVPISTSPEEDSTWEFLRLI 296 (364)
T ss_dssp EESCHHHHHHHHHHHTCCEEEEEEECCSSCCCCC----CHHHHHHHH
T ss_pred EECcHHHHHHhhhccCCCceEEEECCCCcccCcCchhhhHHHHHHHH
Confidence 4567777666542112689999999855 41 2446676665
No 445
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A*
Probab=33.57 E-value=2e+02 Score=23.54 Aligned_cols=75 Identities=19% Similarity=0.127 Sum_probs=50.1
Q ss_pred EcCHHHHHHHHHhhCCCccEEEEcCC----CC-CCCHHHHHHHHHccC----CCCCCcEEEEecCCCHHHHHHHHHcCCc
Q 044790 6 VENGLQAWKILEDLMDQIDLVLTEVL----MP-CLSGIGLLRKIMNHK----TCKNIPVIMMSSHDSMSIVFKCLSKGAV 76 (162)
Q Consensus 6 a~~~~eal~~l~~~~~~~DlvllD~~----mp-~~~g~~~~~~ir~~~----~~~~~piI~lt~~~~~~~~~~a~~~Ga~ 76 (162)
+.+.++|.... + ..+|.|++.-. +. ....++++..++..- ....+|||+-..-.....+.+++.+||+
T Consensus 351 v~~~e~A~~a~-~--aGad~I~vs~hgG~~~d~~~~~~~~l~~v~~~v~~~~~~~~ipVia~GGI~~g~Dv~kaLalGAd 427 (511)
T 1kbi_A 351 VQRTEDVIKAA-E--IGVSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAK 427 (511)
T ss_dssp ECSHHHHHHHH-H--TTCSEEEECCTTTTSSTTCCCHHHHHHHHHHHHHTTTCBTTBEEEEESSCCSHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHH-H--cCCCEEEEcCCCCccCCCCCchHHHHHHHHHHHHhhccCCCcEEEEECCCCCHHHHHHHHHcCCC
Confidence 44566665544 4 57899988432 11 123466666664421 1147999999999999999999999999
Q ss_pred eE-EeCCC
Q 044790 77 YF-LVKPI 83 (162)
Q Consensus 77 ~~-l~KP~ 83 (162)
.. |-.|+
T Consensus 428 aV~iGr~~ 435 (511)
T 1kbi_A 428 GVGLGRPF 435 (511)
T ss_dssp EEEECHHH
T ss_pred EEEECHHH
Confidence 87 44454
No 446
>2pp0_A L-talarate/galactarate dehydratase; enolase superfamily, LYA; 2.20A {Salmonella typhimurium} PDB: 2pp1_A* 2pp3_A*
Probab=33.56 E-value=86 Score=24.51 Aligned_cols=72 Identities=11% Similarity=0.081 Sum_probs=44.5
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcC-CceEEeCCCC
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKG-AVYFLVKPIR 84 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~G-a~~~l~KP~~ 84 (162)
+..+++++++.. .++++.++.--+|. +-++.+++|++. ..+||+.-=.........++++.| ++-+..|+..
T Consensus 232 ~~~~ai~~~~~l-~~~~i~~iEqP~~~-~d~~~~~~l~~~---~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~ 304 (398)
T 2pp0_A 232 DRETAIRMGRKM-EQFNLIWIEEPLDA-YDIEGHAQLAAA---LDTPIATGEMLTSFREHEQLILGNASDFVQPDAPR 304 (398)
T ss_dssp CHHHHHHHHHHH-GGGTCSCEECCSCT-TCHHHHHHHHHH---CSSCEEECTTCCSHHHHHHHHHTTCCSEECCCHHH
T ss_pred CHHHHHHHHHHH-HHcCCceeeCCCCh-hhHHHHHHHHhh---CCCCEEecCCcCCHHHHHHHHHcCCCCEEEeCccc
Confidence 356666666553 34555555544443 336677777764 357877655555778888888887 5555677743
No 447
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=33.53 E-value=84 Score=19.72 Aligned_cols=43 Identities=14% Similarity=0.264 Sum_probs=23.9
Q ss_pred HHHHHHHHhhCCCccEEEEcCCC-CCC----CHHHHHHHHHccCCCCCCcEEEE
Q 044790 10 LQAWKILEDLMDQIDLVLTEVLM-PCL----SGIGLLRKIMNHKTCKNIPVIMM 58 (162)
Q Consensus 10 ~eal~~l~~~~~~~DlvllD~~m-p~~----~g~~~~~~ir~~~~~~~~piI~l 58 (162)
.+.++..++ ..+|+|+|...- .+. -| .+.+.+-.. ..+||+++
T Consensus 89 ~~I~~~a~~--~~~dliV~G~~~~~~~~~~~~G-s~~~~vl~~---~~~pVlvv 136 (137)
T 2z08_A 89 EAILQAARA--EKADLIVMGTRGLGALGSLFLG-SQSQRVVAE---APCPVLLV 136 (137)
T ss_dssp HHHHHHHHH--TTCSEEEEESSCTTCCSCSSSC-HHHHHHHHH---CSSCEEEE
T ss_pred HHHHHHHHH--cCCCEEEECCCCCchhhhhhhc-cHHHHHHhc---CCCCEEEe
Confidence 344455555 789999998652 222 23 233343322 36888875
No 448
>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*
Probab=33.51 E-value=47 Score=20.53 Aligned_cols=51 Identities=8% Similarity=0.083 Sum_probs=30.9
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEec
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSS 60 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~ 60 (162)
....+..+|.+ ..+..-.+|+..-..++.++.+.++.......+|.|++-.
T Consensus 31 ~C~~~~~~L~~--~~i~~~~~di~~~~~~~~~~~~~l~~~~g~~tvP~ifi~g 81 (113)
T 3rhb_A 31 YCTEVKTLFKR--LGVQPLVVELDQLGPQGPQLQKVLERLTGQHTVPNVFVCG 81 (113)
T ss_dssp HHHHHHHHHHH--TTCCCEEEEGGGSTTHHHHHHHHHHHHHSCCSSCEEEETT
T ss_pred hHHHHHHHHHH--cCCCCeEEEeecCCCChHHHHHHHHHHhCCCCcCEEEECC
Confidence 45667777777 5555556666543234556666665432347899997754
No 449
>3qgm_A P-nitrophenyl phosphatase (PHO2); structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 2.00A {Archaeoglobus fulgidus} SCOP: c.108.1.0
Probab=33.44 E-value=73 Score=22.64 Aligned_cols=51 Identities=12% Similarity=0.116 Sum_probs=31.4
Q ss_pred CccEEEEcCC--CCC-----CCHHHHHHHHHccCCCCCCcEEEEecC---CCHHHHHHHHHcCCc
Q 044790 22 QIDLVLTEVL--MPC-----LSGIGLLRKIMNHKTCKNIPVIMMSSH---DSMSIVFKCLSKGAV 76 (162)
Q Consensus 22 ~~DlvllD~~--mp~-----~~g~~~~~~ir~~~~~~~~piI~lt~~---~~~~~~~~a~~~Ga~ 76 (162)
.+.+|++|+. +-. ..-.+++++++. ..++++++|.+ .........-..|.+
T Consensus 7 ~~kli~~DlDGTLl~~~~~~~~~~~ai~~l~~----~Gi~v~l~Tgr~~r~~~~~~~~l~~lg~~ 67 (268)
T 3qgm_A 7 DKKGYIIDIDGVIGKSVTPIPEGVEGVKKLKE----LGKKIIFVSNNSTRSRRILLERLRSFGLE 67 (268)
T ss_dssp CCSEEEEECBTTTEETTEECHHHHHHHHHHHH----TTCEEEEEECCSSSCHHHHHHHHHHTTCC
T ss_pred cCCEEEEcCcCcEECCCEeCcCHHHHHHHHHH----cCCeEEEEeCcCCCCHHHHHHHHHHCCCC
Confidence 4789999973 211 124566777766 47899999983 344444444455654
No 450
>2r6o_A Putative diguanylate cyclase/phosphodiesterase (G domains); ggdef and EAL domains, structural genomics, PSI-2; 1.80A {Thiobacillus denitrificans} PDB: 3ii8_A* 3n3t_A*
Probab=33.42 E-value=43 Score=25.07 Aligned_cols=86 Identities=10% Similarity=0.166 Sum_probs=54.3
Q ss_pred EcCHHHHHHHHHhhCCCccEEEEcCCC----CC-CCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCce---
Q 044790 6 VENGLQAWKILEDLMDQIDLVLTEVLM----PC-LSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVY--- 77 (162)
Q Consensus 6 a~~~~eal~~l~~~~~~~DlvllD~~m----p~-~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~--- 77 (162)
+.+|-..+..+.. -++|.|=+|-.+ .. .....+++.|-.......+.| +.-.-+..+....+.+.|++-
T Consensus 184 FGtG~ssl~~L~~--l~~d~iKID~sfv~~i~~~~~~~~iv~~ii~la~~lg~~v-vAEGVEt~~q~~~l~~lG~d~~QG 260 (294)
T 2r6o_A 184 FGTGYSSLSYLSQ--LPFHGLKIDQSFVRKIPAHPSETQIVTTILALARGLGMEV-VAEGIETAQQYAFLRDRGCEFGQG 260 (294)
T ss_dssp ETSSCBCHHHHHH--SCCCEEEECHHHHTTTTTSHHHHHHHHHHHHHHHHTTCEE-EECCCCSHHHHHHHHHTTCCEECS
T ss_pred CCCCchhHHHHHh--CCCCEEEECHHHHhhhhcChHHHHHHHHHHHHHHHCCCEE-EEecCCcHHHHHHHHHcCCCEEEc
Confidence 3344445666776 788999888532 21 122344555433221134544 466667888888888899884
Q ss_pred -EEeCCCCHHHHHHHHHH
Q 044790 78 -FLVKPIRKNELQNLWQH 94 (162)
Q Consensus 78 -~l~KP~~~~~L~~~i~~ 94 (162)
|+.||...+++...+.+
T Consensus 261 y~~~~P~~~~~~~~~l~~ 278 (294)
T 2r6o_A 261 NLMSTPQAADAFASLLDR 278 (294)
T ss_dssp TTTCCCEEHHHHHHHHHH
T ss_pred CccCCCCCHHHHHHHHHh
Confidence 48999999999887764
No 451
>4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440}
Probab=33.39 E-value=63 Score=25.24 Aligned_cols=59 Identities=12% Similarity=0.025 Sum_probs=39.3
Q ss_pred HHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEE
Q 044790 12 AWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFL 79 (162)
Q Consensus 12 al~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l 79 (162)
..+.+++ ..+|.|-+-... .|.++++.||+.- .+|||..... ..+.+.++++.|.-|++
T Consensus 247 la~~l~~--~Gvd~i~v~~~~---~~~~~~~~ik~~~---~iPvi~~Ggi-t~e~a~~~l~~g~aD~V 305 (362)
T 4ab4_A 247 VARELGK--RGIAFICSRERE---ADDSIGPLIKEAF---GGPYIVNERF-DKASANAALASGKADAV 305 (362)
T ss_dssp HHHHHHH--TTCSEEEEECCC---CTTCCHHHHHHHH---CSCEEEESSC-CHHHHHHHHHTTSCSEE
T ss_pred HHHHHHH--hCCCEEEECCCC---CCHHHHHHHHHHC---CCCEEEeCCC-CHHHHHHHHHcCCccEE
Confidence 3444555 567877654433 2225678887753 5788887776 89999999999844443
No 452
>1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A
Probab=33.36 E-value=1.5e+02 Score=22.07 Aligned_cols=85 Identities=12% Similarity=0.074 Sum_probs=55.2
Q ss_pred EEEcCHHHHHHHHHhhCCCccEEEEcC-CCCC-CCHHHHHHHHHccCCCCCCcEEEEecCC-------------CHHHHH
Q 044790 4 IAVENGLQAWKILEDLMDQIDLVLTEV-LMPC-LSGIGLLRKIMNHKTCKNIPVIMMSSHD-------------SMSIVF 68 (162)
Q Consensus 4 ~~a~~~~eal~~l~~~~~~~DlvllD~-~mp~-~~g~~~~~~ir~~~~~~~~piI~lt~~~-------------~~~~~~ 68 (162)
+++.+...|+...+. ..=-|-||+- ...+ .-++.+++.+++. ..+||.+|.-.. ...++.
T Consensus 6 vc~~s~~~a~~A~~~--GAdRIELc~~L~~GGlTPS~g~i~~~~~~---~~ipv~vMIRPR~GdF~Ys~~E~~~M~~Di~ 80 (256)
T 1twd_A 6 ICCYSMECALTAQQN--GADRVELCAAPKEGGLTPSLGVLKSVRQR---VTIPVHPIIRPRGGDFCYSDGEFAAILEDVR 80 (256)
T ss_dssp EEESSHHHHHHHHHT--TCSEEEECBCGGGTCBCCCHHHHHHHHHH---CCSCEEEBCCSSSSCSCCCHHHHHHHHHHHH
T ss_pred EEeCCHHHHHHHHHc--CCCEEEEcCCcccCCCCCCHHHHHHHHHH---cCCceEEEECCCCCCCcCCHHHHHHHHHHHH
Confidence 478889999888876 4445666653 2222 2447778888765 378988887542 233456
Q ss_pred HHHHcCCceEEeCC------CCHHHHHHHHH
Q 044790 69 KCLSKGAVYFLVKP------IRKNELQNLWQ 93 (162)
Q Consensus 69 ~a~~~Ga~~~l~KP------~~~~~L~~~i~ 93 (162)
.+.+.|+++|+.=- ++.+.+...+.
T Consensus 81 ~~~~~GadGvV~G~Lt~dg~iD~~~~~~Li~ 111 (256)
T 1twd_A 81 TVRELGFPGLVTGVLDVDGNVDMPRMEKIMA 111 (256)
T ss_dssp HHHHTTCSEEEECCBCTTSSBCHHHHHHHHH
T ss_pred HHHHcCCCEEEEeeECCCCCcCHHHHHHHHH
Confidence 67889999997542 55566655554
No 453
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=33.19 E-value=82 Score=23.51 Aligned_cols=42 Identities=14% Similarity=0.166 Sum_probs=32.1
Q ss_pred HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCC
Q 044790 38 IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKP 82 (162)
Q Consensus 38 ~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP 82 (162)
.++++++|+.. .+||++=-+-..++.+.+++..|+|+.|.-.
T Consensus 197 ~~~v~~vr~~~---~~Pv~vGfGIst~e~~~~~~~~gADgvIVGS 238 (271)
T 3nav_A 197 HALLERLQQFD---APPALLGFGISEPAQVKQAIEAGAAGAISGS 238 (271)
T ss_dssp HHHHHHHHHTT---CCCEEECSSCCSHHHHHHHHHTTCSEEEESH
T ss_pred HHHHHHHHHhc---CCCEEEECCCCCHHHHHHHHHcCCCEEEECH
Confidence 45678887753 6888875555678888879999999998753
No 454
>4e5t_A Mandelate racemase / muconate lactonizing enzyme, terminal domain protein; aldolase, structural genomics, biology; 2.90A {Labrenzia alexandrii}
Probab=32.93 E-value=77 Score=24.91 Aligned_cols=73 Identities=16% Similarity=0.073 Sum_probs=44.1
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCce-EEeCCCCH
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVY-FLVKPIRK 85 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~-~l~KP~~~ 85 (162)
+..+|+++++.. ..+++..++--++.. -++.+++|++. ..+||+.-=.........++++.|+-+ +..|+...
T Consensus 220 ~~~~A~~~~~~l-~~~~i~~iEeP~~~~-~~~~~~~l~~~---~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~d~~~~ 293 (404)
T 4e5t_A 220 TVSGAKRLARRL-EAYDPLWFEEPIPPE-KPEDMAEVARY---TSIPVATGERLCTKYEFSRVLETGAASILQMNLGRV 293 (404)
T ss_dssp CHHHHHHHHHHH-GGGCCSEEECCSCTT-CHHHHHHHHHH---CSSCEEECTTCCHHHHHHHHHHHTCCSEECCCTTTS
T ss_pred CHHHHHHHHHHH-hhcCCcEEECCCCcc-cHHHHHHHHhh---CCCCEEeCCCcCCHHHHHHHHHhCCCCEEecCcccc
Confidence 456777666553 345665665444432 36777888765 367877544444566777888887554 56676553
No 455
>3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0
Probab=32.91 E-value=65 Score=25.13 Aligned_cols=59 Identities=12% Similarity=0.149 Sum_probs=39.5
Q ss_pred HHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceE
Q 044790 11 QAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYF 78 (162)
Q Consensus 11 eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~ 78 (162)
+..+.+++ ..+|.|-+-... .|.++++.||+.- .+|||..... ..+.+.++++.|.-|+
T Consensus 254 ~la~~l~~--~Gvd~i~v~~~~---~~~~~~~~ik~~~---~iPvi~~Ggi-t~e~a~~~l~~G~aD~ 312 (361)
T 3gka_A 254 HVARELGR--RRIAFLFARESF---GGDAIGQQLKAAF---GGPFIVNENF-TLDSAQAALDAGQADA 312 (361)
T ss_dssp HHHHHHHH--TTCSEEEEECCC---STTCCHHHHHHHH---CSCEEEESSC-CHHHHHHHHHTTSCSE
T ss_pred HHHHHHHH--cCCCEEEECCCC---CCHHHHHHHHHHc---CCCEEEeCCC-CHHHHHHHHHcCCccE
Confidence 34455555 567877664433 2226678887753 5788887776 8999999999984444
No 456
>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*
Probab=32.74 E-value=13 Score=24.86 Aligned_cols=19 Identities=26% Similarity=0.273 Sum_probs=10.9
Q ss_pred HHHHHHHHHcCCceEEeCC
Q 044790 64 MSIVFKCLSKGAVYFLVKP 82 (162)
Q Consensus 64 ~~~~~~a~~~Ga~~~l~KP 82 (162)
.+.+.++.+.|+...+..+
T Consensus 91 ~~vv~~~~~~gi~~i~~~~ 109 (144)
T 2d59_A 91 MEYVEQAIKKGAKVVWFQY 109 (144)
T ss_dssp HHHHHHHHHHTCSEEEECT
T ss_pred HHHHHHHHHcCCCEEEECC
Confidence 3344556667776665554
No 457
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=32.66 E-value=1.6e+02 Score=22.22 Aligned_cols=75 Identities=11% Similarity=0.071 Sum_probs=49.3
Q ss_pred HHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCc------------
Q 044790 9 GLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAV------------ 76 (162)
Q Consensus 9 ~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~------------ 76 (162)
..+..+++.. .|++++=.. ...-|..+++.+. ..+|||.... ....+.+..|..
T Consensus 264 ~~~~~~~~~~----adv~v~pS~-~E~~~~~~lEAma-----~G~PvI~s~~----~g~~e~v~~~~~~~i~~~~~~~~~ 329 (413)
T 3oy2_A 264 DERVDMMYNA----CDVIVNCSS-GEGFGLCSAEGAV-----LGKPLIISAV----GGADDYFSGDCVYKIKPSAWISVD 329 (413)
T ss_dssp HHHHHHHHHH----CSEEEECCS-CCSSCHHHHHHHT-----TTCCEEEECC----HHHHHHSCTTTSEEECCCEEEECT
T ss_pred HHHHHHHHHh----CCEEEeCCC-cCCCCcHHHHHHH-----cCCCEEEcCC----CChHHHHccCcccccccccccccc
Confidence 4455555554 578777433 2334566777763 5788886432 334555666666
Q ss_pred ---eE--EeCCCCHHHHHHHHHHHHHh
Q 044790 77 ---YF--LVKPIRKNELQNLWQHVWRK 98 (162)
Q Consensus 77 ---~~--l~KP~~~~~L~~~i~~~l~~ 98 (162)
++ +..|.+.++|...| .++..
T Consensus 330 ~~~G~~gl~~~~d~~~la~~i-~l~~~ 355 (413)
T 3oy2_A 330 DRDGIGGIEGIIDVDDLVEAF-TFFKD 355 (413)
T ss_dssp TTCSSCCEEEECCHHHHHHHH-HHTTS
T ss_pred cccCcceeeCCCCHHHHHHHH-HHhcC
Confidence 88 99999999999999 87653
No 458
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=32.66 E-value=79 Score=25.24 Aligned_cols=42 Identities=12% Similarity=0.224 Sum_probs=0.0
Q ss_pred HHHHHHHHhhCC----CccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCC
Q 044790 10 LQAWKILEDLMD----QIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHD 62 (162)
Q Consensus 10 ~eal~~l~~~~~----~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~ 62 (162)
.+.++.+.. . +||+||.|..++ -+..+++++ .+|.+.+....
T Consensus 104 ~~ll~~l~~--~~~~~~~d~vI~D~~~~--~~~~vA~~l-------giP~v~~~~~~ 149 (482)
T 2pq6_A 104 CELLTRLNH--STNVPPVTCLVSDCCMS--FTIQAAEEF-------ELPNVLYFSSS 149 (482)
T ss_dssp HHHHHHHHT--CSSSCCCCEEEEETTCT--HHHHHHHHT-------TCCEEEEECSC
T ss_pred HHHHHHHhh--hccCCCceEEEECCcch--hHHHHHHHc-------CCCEEEEeccc
No 459
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=32.65 E-value=85 Score=19.06 Aligned_cols=70 Identities=9% Similarity=0.064 Sum_probs=42.3
Q ss_pred EcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccC-CCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCC
Q 044790 6 VENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHK-TCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIR 84 (162)
Q Consensus 6 a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~-~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~ 84 (162)
|.-...|-++|.+ ..++...+|+.- +. +..+.+++.. -...+|+|++... .++.- ++
T Consensus 14 Cp~C~~aK~~L~~--~gi~y~~idi~~---d~-~~~~~~~~~~~G~~tVP~I~i~Dg---------------~~l~~-~~ 71 (92)
T 2lqo_A 14 CGYCLRLKTALTA--NRIAYDEVDIEH---NR-AAAEFVGSVNGGNRTVPTVKFADG---------------STLTN-PS 71 (92)
T ss_dssp CSSHHHHHHHHHH--TTCCCEEEETTT---CH-HHHHHHHHHSSSSSCSCEEEETTS---------------CEEES-CC
T ss_pred CHhHHHHHHHHHh--cCCceEEEEcCC---CH-HHHHHHHHHcCCCCEeCEEEEeCC---------------EEEeC-CC
Confidence 3456778888888 677777778753 22 3333333321 1267999988531 13433 47
Q ss_pred HHHHHHHHHHHHH
Q 044790 85 KNELQNLWQHVWR 97 (162)
Q Consensus 85 ~~~L~~~i~~~l~ 97 (162)
.++|.++|.++..
T Consensus 72 ~~el~~~L~el~g 84 (92)
T 2lqo_A 72 ADEVKAKLVKIAG 84 (92)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcC
Confidence 7788888777654
No 460
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=32.55 E-value=90 Score=23.22 Aligned_cols=42 Identities=12% Similarity=0.101 Sum_probs=31.8
Q ss_pred HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCC
Q 044790 38 IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKP 82 (162)
Q Consensus 38 ~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP 82 (162)
.++++++|+. ..+||++=.+-..++.+.+++..|||++|.-.
T Consensus 195 ~~~v~~vr~~---~~~pv~vGfGI~~~e~~~~~~~~gADgvVVGS 236 (267)
T 3vnd_A 195 ENILTQLAEF---NAPPPLLGFGIAEPEQVRAAIKAGAAGAISGS 236 (267)
T ss_dssp HHHHHHHHTT---TCCCEEECSSCCSHHHHHHHHHTTCSEEEECH
T ss_pred HHHHHHHHHh---cCCCEEEECCcCCHHHHHHHHHcCCCEEEECH
Confidence 4667777764 36888865555568888879999999998763
No 461
>4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp}
Probab=32.51 E-value=1.4e+02 Score=21.57 Aligned_cols=80 Identities=11% Similarity=0.013 Sum_probs=49.4
Q ss_pred HHHHHHHHHhhCCCccEEEEcCCCCCC-CH--HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe-----
Q 044790 9 GLQAWKILEDLMDQIDLVLTEVLMPCL-SG--IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV----- 80 (162)
Q Consensus 9 ~~eal~~l~~~~~~~DlvllD~~mp~~-~g--~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~----- 80 (162)
..+.++.+... .--.+++.|+.--++ .| +++++.|++.. +.+|||.-..-...+++.+. +.++++.+.
T Consensus 153 ~~~~~~~~~~~-g~~eil~t~Id~DGt~~G~d~~l~~~l~~~~--~~ipviasGGv~~~~Dl~~l-~~~~~gvivg~Al~ 228 (243)
T 4gj1_A 153 LMEVLDFYSNK-GLKHILCTDISKDGTMQGVNVRLYKLIHEIF--PNICIQASGGVASLKDLENL-KGICSGVIVGKALL 228 (243)
T ss_dssp HHHHHHHHHTT-TCCEEEEEETTC-----CCCHHHHHHHHHHC--TTSEEEEESCCCSHHHHHHT-TTTCSEEEECHHHH
T ss_pred HHHHHHHHhhc-CCcEEEeeeecccccccCCCHHHHHHHHHhc--CCCCEEEEcCCCCHHHHHHH-HccCchhehHHHHH
Confidence 34555555551 234678888865442 33 57788887653 57999988888888887664 566777664
Q ss_pred -CCCCHHHHHHHH
Q 044790 81 -KPIRKNELQNLW 92 (162)
Q Consensus 81 -KP~~~~~L~~~i 92 (162)
.-++.++..+.+
T Consensus 229 ~g~i~l~ea~~~l 241 (243)
T 4gj1_A 229 DGVFSVEEGIRCL 241 (243)
T ss_dssp TTSSCHHHHHHHH
T ss_pred CCCCCHHHHHHHh
Confidence 345555554443
No 462
>3tj4_A Mandelate racemase; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.50A {Agrobacterium tumefaciens} PDB: 4h19_A*
Probab=32.44 E-value=1.7e+02 Score=22.52 Aligned_cols=80 Identities=9% Similarity=0.102 Sum_probs=53.4
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcC-CceEEeCCCCHH
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKG-AVYFLVKPIRKN 86 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~G-a~~~l~KP~~~~ 86 (162)
+..+|+++++.. ..+++.+++--+|..+ ++.+++|++. ..+||+.==.........++++.| ++-+..|+...-
T Consensus 209 ~~~~a~~~~~~l-~~~~i~~iEqP~~~~d-~~~~~~l~~~---~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~G 283 (372)
T 3tj4_A 209 DLPTCQRFCAAA-KDLDIYWFEEPLWYDD-VTSHARLARN---TSIPIALGEQLYTVDAFRSFIDAGAVAYVQPDVTRLG 283 (372)
T ss_dssp CHHHHHHHHHHT-TTSCEEEEESCSCTTC-HHHHHHHHHH---CSSCEEECTTCCSHHHHHHHHHTTCCSEECCCTTTTT
T ss_pred CHHHHHHHHHHH-hhcCCCEEECCCCchh-HHHHHHHHhh---cCCCEEeCCCccCHHHHHHHHHcCCCCEEEeCccccC
Confidence 467888887764 5678888876555433 6777888765 367877544445677788888887 555568887654
Q ss_pred HHHHHH
Q 044790 87 ELQNLW 92 (162)
Q Consensus 87 ~L~~~i 92 (162)
=|...+
T Consensus 284 Git~~~ 289 (372)
T 3tj4_A 284 GITEYI 289 (372)
T ss_dssp HHHHHH
T ss_pred CHHHHH
Confidence 444443
No 463
>1tkk_A Similar to chloromuconate cycloisomerase; epimerase, enolase super family,; 2.10A {Bacillus subtilis} SCOP: c.1.11.2 d.54.1.1 PDB: 1jpm_A
Probab=32.41 E-value=1.4e+02 Score=22.82 Aligned_cols=72 Identities=15% Similarity=0.226 Sum_probs=46.7
Q ss_pred CHHHHHHHHHhhCCC--ccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcC-CceEEeCCCC
Q 044790 8 NGLQAWKILEDLMDQ--IDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKG-AVYFLVKPIR 84 (162)
Q Consensus 8 ~~~eal~~l~~~~~~--~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~G-a~~~l~KP~~ 84 (162)
+..+|+++++.. .. +++..+.--+|. +-++.+++|++. ..+||+.==.........++++.| ++.+..||..
T Consensus 197 ~~~~a~~~~~~l-~~~~~~i~~iEqP~~~-~d~~~~~~l~~~---~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~ 271 (366)
T 1tkk_A 197 RPKEAVTAIRKM-EDAGLGIELVEQPVHK-DDLAGLKKVTDA---TDTPIMADESVFTPRQAFEVLQTRSADLINIKLMK 271 (366)
T ss_dssp CHHHHHHHHHHH-HHTTCCEEEEECCSCT-TCHHHHHHHHHH---CSSCEEECTTCCSHHHHHHHHHHTCCSEEEECHHH
T ss_pred CHHHHHHHHHHH-hhcCCCceEEECCCCc-ccHHHHHHHHhh---CCCCEEEcCCCCCHHHHHHHHHhCCCCEEEeehhh
Confidence 456677766553 34 788777654543 336777888764 357777544445677788888776 6666788754
No 464
>3rr1_A GALD, putative D-galactonate dehydratase; enolase, magnesium binding site, lyase; 1.95A {Ralstonia pickettii} PDB: 3rra_A
Probab=32.31 E-value=80 Score=24.91 Aligned_cols=80 Identities=10% Similarity=0.074 Sum_probs=46.5
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcC-CceEEeCCCCHH
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKG-AVYFLVKPIRKN 86 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~G-a~~~l~KP~~~~ 86 (162)
+..+|+++++.. .++++..+.--+|. +-++.++.|++. ..+||+.-=.-.......++++.| ++-+..|+...-
T Consensus 190 ~~~~A~~~~~~L-~~~~i~~iEeP~~~-~d~~~~~~l~~~---~~iPIa~dE~i~~~~~~~~~l~~~a~d~v~~d~~~~G 264 (405)
T 3rr1_A 190 SAPMAKVLIKEL-EPYRPLFIEEPVLA-EQAETYARLAAH---THLPIAAGERMFSRFDFKRVLEAGGVSILQPDLSHAG 264 (405)
T ss_dssp CHHHHHHHHHHH-GGGCCSCEECSSCC-SSTHHHHHHHTT---CSSCEEECTTCCSHHHHHHHHHHCCCSEECCBTTTTT
T ss_pred CHHHHHHHHHHH-HhcCCCEEECCCCc-ccHHHHHHHHhc---CCCCEEecCCcCCHHHHHHHHHHhCCCeEEEChhhcC
Confidence 455666655543 34555555544443 235667777754 367777544455677788888876 555567776654
Q ss_pred HHHHHH
Q 044790 87 ELQNLW 92 (162)
Q Consensus 87 ~L~~~i 92 (162)
=|...+
T Consensus 265 Gitea~ 270 (405)
T 3rr1_A 265 GITECV 270 (405)
T ss_dssp HHHHHH
T ss_pred CHHHHH
Confidence 444433
No 465
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=32.28 E-value=1e+02 Score=19.90 Aligned_cols=46 Identities=22% Similarity=0.403 Sum_probs=27.0
Q ss_pred HHHHHHHHHhhCCCccEEEEcCC-CCCC----CHHHHHHHHHccCCCCCCcEEEEec
Q 044790 9 GLQAWKILEDLMDQIDLVLTEVL-MPCL----SGIGLLRKIMNHKTCKNIPVIMMSS 60 (162)
Q Consensus 9 ~~eal~~l~~~~~~~DlvllD~~-mp~~----~g~~~~~~ir~~~~~~~~piI~lt~ 60 (162)
.++.++..++ ..+|+|++... .... -| .+.+.+-.. ..+||+++-.
T Consensus 109 ~~~I~~~a~~--~~~dlIV~G~~g~~~~~~~~~G-Sv~~~vl~~---~~~pVlvv~~ 159 (162)
T 1mjh_A 109 HEEIVKIAED--EGVDIIIMGSHGKTNLKEILLG-SVTENVIKK---SNKPVLVVKR 159 (162)
T ss_dssp HHHHHHHHHH--TTCSEEEEESCCSSCCTTCSSC-HHHHHHHHH---CCSCEEEECC
T ss_pred HHHHHHHHHH--cCCCEEEEcCCCCCCccceEec-chHHHHHHh---CCCCEEEEeC
Confidence 3444555666 78999999875 2222 23 234444332 4689998854
No 466
>1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1
Probab=32.26 E-value=81 Score=23.81 Aligned_cols=62 Identities=16% Similarity=0.187 Sum_probs=41.4
Q ss_pred HHHHHHHhhCCCccEEEEcCCC--C---CCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHH-cCCceEE
Q 044790 11 QAWKILEDLMDQIDLVLTEVLM--P---CLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLS-KGAVYFL 79 (162)
Q Consensus 11 eal~~l~~~~~~~DlvllD~~m--p---~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~-~Ga~~~l 79 (162)
+..+.+.+ ..+|.|.+--.. . +...+++++.|++ .+|||.-..-...+.+.++++ .|++...
T Consensus 144 ~~a~~l~~--~G~d~i~v~g~~~~~~~~~~~~~~~i~~i~~-----~ipVi~~GgI~s~~da~~~l~~~gad~V~ 211 (318)
T 1vhn_A 144 EIYRILVE--EGVDEVFIHTRTVVQSFTGRAEWKALSVLEK-----RIPTFVSGDIFTPEDAKRALEESGCDGLL 211 (318)
T ss_dssp HHHHHHHH--TTCCEEEEESSCTTTTTSSCCCGGGGGGSCC-----SSCEEEESSCCSHHHHHHHHHHHCCSEEE
T ss_pred HHHHHHHH--hCCCEEEEcCCCccccCCCCcCHHHHHHHHc-----CCeEEEECCcCCHHHHHHHHHcCCCCEEE
Confidence 55566666 678888774211 1 1112455555543 689998888788999999998 6999763
No 467
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=32.14 E-value=67 Score=23.11 Aligned_cols=59 Identities=14% Similarity=0.117 Sum_probs=37.0
Q ss_pred CccEEEEcCCCCCCC-------HHHHHHHHHccC--CCCCCcEEEEecCCCHHHHHHHHHcCCceEEeC
Q 044790 22 QIDLVLTEVLMPCLS-------GIGLLRKIMNHK--TCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVK 81 (162)
Q Consensus 22 ~~DlvllD~~mp~~~-------g~~~~~~ir~~~--~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~K 81 (162)
..|.|++-...|+.. +++.++++|+.. ....+||.+.-+-.. +.+..+.++||+.++.=
T Consensus 134 ~~D~v~~msv~pg~ggq~~~~~~~~~i~~lr~~~~~~~~~~~I~v~GGI~~-~~~~~~~~aGad~vvvG 201 (230)
T 1tqj_A 134 VCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKP-NNTWQVLEAGANAIVAG 201 (230)
T ss_dssp GCSEEEEESSCC----CCCCGGGHHHHHHHHHHHHHHTCCCEEEEESSCCT-TTTHHHHHHTCCEEEES
T ss_pred cCCEEEEEEeccccCCccCcHHHHHHHHHHHHHHHhcCCCCcEEEECCcCH-HHHHHHHHcCCCEEEEC
Confidence 467777666666533 355666666532 002678887666544 77788899999998764
No 468
>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1, uncharacterized protein, structural genomics; 1.44A {Corynebacterium glutamicum atcc 13032}
Probab=32.11 E-value=62 Score=20.01 Aligned_cols=39 Identities=8% Similarity=0.008 Sum_probs=23.5
Q ss_pred ccEEEEcCCCCCCC-------HHHHHHHHHccCCCCCCcEEEEecCCCHH
Q 044790 23 IDLVLTEVLMPCLS-------GIGLLRKIMNHKTCKNIPVIMMSSHDSMS 65 (162)
Q Consensus 23 ~DlvllD~~mp~~~-------g~~~~~~ir~~~~~~~~piI~lt~~~~~~ 65 (162)
+.+|++|+.---.+ -.++++.+++ ..+++.++|......
T Consensus 2 ~k~i~~D~DgtL~~~~~~~~~~~~~l~~L~~----~G~~~~i~S~~~~~~ 47 (137)
T 2pr7_A 2 MRGLIVDYAGVLDGTDEDQRRWRNLLAAAKK----NGVGTVILSNDPGGL 47 (137)
T ss_dssp CCEEEECSTTTTSSCHHHHHHHHHHHHHHHH----TTCEEEEEECSCCGG
T ss_pred CcEEEEeccceecCCCccCccHHHHHHHHHH----CCCEEEEEeCCCHHH
Confidence 35678877431111 2345666665 468899999866543
No 469
>1zcc_A Glycerophosphodiester phosphodiesterase; NYSGXRC, agrobacterium tumefaciens STR. C58, structural genomics; 2.50A {Agrobacterium tumefaciens str} SCOP: c.1.18.3
Probab=32.09 E-value=1.4e+02 Score=21.43 Aligned_cols=49 Identities=8% Similarity=0.178 Sum_probs=34.0
Q ss_pred HHHHHHHccCCCCCCcEEEEecCCCHHHHHH-HHHcCCceEEeCCCCHHHHHHHHHH
Q 044790 39 GLLRKIMNHKTCKNIPVIMMSSHDSMSIVFK-CLSKGAVYFLVKPIRKNELQNLWQH 94 (162)
Q Consensus 39 ~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~-a~~~Ga~~~l~KP~~~~~L~~~i~~ 94 (162)
++++.+++ ..++|.+.|-. +...+.+ +++.|++++++- .++.+...++.
T Consensus 185 ~~v~~~~~----~G~~v~~wTvn-~~~~~~~~l~~~GvdgIiTD--~p~~~~~~~~~ 234 (248)
T 1zcc_A 185 GIIEASRK----AGLEIMVYYGG-DDMAVHREIATSDVDYINLD--RPDLFAAVRSG 234 (248)
T ss_dssp HHHHHHHH----HTCEEEEECCC-CCHHHHHHHHHSSCSEEEES--CHHHHHHHHHH
T ss_pred HHHHHHHH----CCCEEEEECCC-CHHHHHHHHHHcCCCEEEEC--CHHHHHHHHHH
Confidence 44555554 46888888864 5666778 999999999975 45566555554
No 470
>3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A*
Probab=32.05 E-value=51 Score=24.97 Aligned_cols=66 Identities=12% Similarity=0.033 Sum_probs=0.0
Q ss_pred EEEEcCHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCC------cEEEEecCCCHHHHHHHHHcCCc
Q 044790 3 VIAVENGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNI------PVIMMSSHDSMSIVFKCLSKGAV 76 (162)
Q Consensus 3 v~~a~~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~------piI~lt~~~~~~~~~~a~~~Ga~ 76 (162)
...+.+.+++.+.++. ..|.|.+|- -+.+.++.+++.- ... ..|..++.-..+.+....+.|++
T Consensus 203 ~vev~tlee~~~A~~a---GaD~I~ld~-----~~~~~l~~~v~~l--~~~~~g~~~v~I~ASGGIt~~ni~~~~~~GvD 272 (294)
T 3c2e_A 203 EVECLSEDEATEAIEA---GADVIMLDN-----FKGDGLKMCAQSL--KNKWNGKKHFLLECSGGLNLDNLEEYLCDDID 272 (294)
T ss_dssp EEECSSSHHHHHHHHH---TCSEEECCC----------------------------CCEEEEECCCCC------CCCSCS
T ss_pred EEecCCHHHHHHHHHc---CCCEEEECC-----CCHHHHHHHHHHh--cccccCCCCeEEEEECCCCHHHHHHHHHcCCC
Q ss_pred eE
Q 044790 77 YF 78 (162)
Q Consensus 77 ~~ 78 (162)
.+
T Consensus 273 ~i 274 (294)
T 3c2e_A 273 IY 274 (294)
T ss_dssp EE
T ss_pred EE
No 471
>2zad_A Muconate cycloisomerase; muconate lactonizing enzyme (MLE), TM0006, struct genomics, NPPSFA; HET: 1PE; 1.60A {Thermotoga maritima} PDB: 3deq_A 3der_A* 3des_A* 3dfy_A
Probab=32.03 E-value=76 Score=24.16 Aligned_cols=80 Identities=15% Similarity=0.123 Sum_probs=49.4
Q ss_pred CHHHHHHHHHhhCCCccEE--EEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcC-CceEEeCCCC
Q 044790 8 NGLQAWKILEDLMDQIDLV--LTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKG-AVYFLVKPIR 84 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~Dlv--llD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~G-a~~~l~KP~~ 84 (162)
+..+|+++++.. .++++. +++--+|. +-++.+++|++.. .+||+.-=.........++++.| ++-+..||..
T Consensus 194 ~~~~a~~~~~~l-~~~~i~~~~iE~P~~~-~~~~~~~~l~~~~---~ipia~dE~~~~~~~~~~~i~~~~~d~v~ik~~~ 268 (345)
T 2zad_A 194 TQKEAVEFARAV-YQKGIDIAVYEQPVRR-EDIEGLKFVRFHS---PFPVAADESARTKFDVMRLVKEEAVDYVNIKLMK 268 (345)
T ss_dssp CHHHHHHHHHHH-HHTTCCCSEEECCSCT-TCHHHHHHHHHHS---SSCEEESTTCCSHHHHHHHHHHTCCSEEEECHHH
T ss_pred CHHHHHHHHHHH-HhcCCCeeeeeCCCCc-ccHHHHHHHHHhC---CCCEEEeCCcCCHHHHHHHHHhCCCCEEEEeccc
Confidence 356666666542 335555 66544554 3477778887653 57877544445677788888877 5566778866
Q ss_pred HHHHHHHHH
Q 044790 85 KNELQNLWQ 93 (162)
Q Consensus 85 ~~~L~~~i~ 93 (162)
--|.+.++
T Consensus 269 -GGit~~~~ 276 (345)
T 2zad_A 269 -SGISDALA 276 (345)
T ss_dssp -HHHHHHHH
T ss_pred -ccHHHHHH
Confidence 55555443
No 472
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=32.01 E-value=1.5e+02 Score=26.41 Aligned_cols=68 Identities=16% Similarity=0.120 Sum_probs=43.7
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCCCCC---CH------------HHHHHHHHccCCCCCCcEEEEecCC--C-HHHHHH
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLMPCL---SG------------IGLLRKIMNHKTCKNIPVIMMSSHD--S-MSIVFK 69 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~mp~~---~g------------~~~~~~ir~~~~~~~~piI~lt~~~--~-~~~~~~ 69 (162)
+..++.+.+.+ ..+|.|-+.+..|.. .+ .++++++|+. ..+||++=.... + .+.+..
T Consensus 649 ~~~~~a~~~~~--~g~d~iein~~~P~~~~~~~~G~~~~~~~~~~~~iv~~v~~~---~~~Pv~vK~~~~~~~~~~~a~~ 723 (1025)
T 1gte_A 649 DWMELSRKAEA--SGADALELNLSCPHGMGERGMGLACGQDPELVRNICRWVRQA---VQIPFFAKLTPNVTDIVSIARA 723 (1025)
T ss_dssp HHHHHHHHHHH--TTCSEEEEECCCBCCCC-----SBGGGCHHHHHHHHHHHHHH---CSSCEEEEECSCSSCHHHHHHH
T ss_pred HHHHHHHHHHh--cCCCEEEEECCCCCCCCCCCcccccccCHHHHHHHHHHHHHh---hCCceEEEeCCChHHHHHHHHH
Confidence 34455566665 679999999876653 12 3467777764 267888743332 1 344666
Q ss_pred HHHcCCceEEe
Q 044790 70 CLSKGAVYFLV 80 (162)
Q Consensus 70 a~~~Ga~~~l~ 80 (162)
+.+.|++.+..
T Consensus 724 ~~~~G~d~i~v 734 (1025)
T 1gte_A 724 AKEGGADGVTA 734 (1025)
T ss_dssp HHHHTCSEEEE
T ss_pred HHHcCCCEEEE
Confidence 77889999877
No 473
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=31.99 E-value=1.4e+02 Score=21.22 Aligned_cols=22 Identities=18% Similarity=0.117 Sum_probs=11.3
Q ss_pred HHHHHHHHhhCCCccEEEEcCCCC
Q 044790 10 LQAWKILEDLMDQIDLVLTEVLMP 33 (162)
Q Consensus 10 ~eal~~l~~~~~~~DlvllD~~mp 33 (162)
.+.++.+.+ ..+-+|++|...+
T Consensus 75 ~~~~~~l~~--~~iPvV~i~~~~~ 96 (276)
T 3jy6_A 75 PQTVQEILH--QQMPVVSVDREMD 96 (276)
T ss_dssp HHHHHHHHT--TSSCEEEESCCCT
T ss_pred HHHHHHHHH--CCCCEEEEecccC
Confidence 444555554 4455666665443
No 474
>2qdd_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.30A {Roseovarius nubinhibens} PDB: 3fvd_B
Probab=31.60 E-value=1.1e+02 Score=23.56 Aligned_cols=69 Identities=14% Similarity=0.127 Sum_probs=46.4
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcC-CceEEeCCCCH
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKG-AVYFLVKPIRK 85 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~G-a~~~l~KP~~~ 85 (162)
+.++++++++.. . +++ .+.--++ -++.+++|++. ..+||+.-=.........++++.| ++.+..||...
T Consensus 202 ~~~~a~~~~~~l-~-~~i-~iEqP~~---d~~~~~~l~~~---~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~ 271 (378)
T 2qdd_A 202 TPAIAVEVLNSV-R-ARD-WIEQPCQ---TLDQCAHVARR---VANPIMLDECLHEFSDHLAAWSRGACEGVKIKPNRV 271 (378)
T ss_dssp CHHHHHHHHTSC-C-CCC-EEECCSS---SHHHHHHHHTT---CCSCEEECTTCCSHHHHHHHHHHTCCSEEEECHHHH
T ss_pred CHHHHHHHHHHh-C-CCc-EEEcCCC---CHHHHHHHHHh---CCCCEEECCCcCCHHHHHHHHHhCCCCEEEeccccc
Confidence 467888888774 4 777 6654444 47778888764 367877544445677788888766 66678888543
No 475
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=31.54 E-value=1.1e+02 Score=22.95 Aligned_cols=48 Identities=8% Similarity=0.036 Sum_probs=34.4
Q ss_pred CCCcEEEEecCCCHHHHHHHHHcCCceEEeCC----CCHHHHHHHHHHHHHh
Q 044790 51 KNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKP----IRKNELQNLWQHVWRK 98 (162)
Q Consensus 51 ~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP----~~~~~L~~~i~~~l~~ 98 (162)
..+|+|++....+.....+.+..+-.+++..+ .+.+.|...|.+++..
T Consensus 305 ~G~P~v~~p~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~ll~~ 356 (391)
T 3tsa_A 305 LGIPQLVLPQYFDQFDYARNLAAAGAGICLPDEQAQSDHEQFTDSIATVLGD 356 (391)
T ss_dssp TTCCEEECCCSTTHHHHHHHHHHTTSEEECCSHHHHTCHHHHHHHHHHHHTC
T ss_pred hCCCEEecCCcccHHHHHHHHHHcCCEEecCcccccCCHHHHHHHHHHHHcC
Confidence 57899988654555544455554456777777 8899999999998853
No 476
>2ps2_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9440A, enolase superfamily, PSI-2; 1.80A {Aspergillus oryzae RIB40}
Probab=31.38 E-value=1.3e+02 Score=23.08 Aligned_cols=71 Identities=17% Similarity=0.100 Sum_probs=46.1
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcC-CceEEeCCCCH
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKG-AVYFLVKPIRK 85 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~G-a~~~l~KP~~~ 85 (162)
+..+++++++.....+++ .+.--++ -++.+++|++. ..+||+.-=.........++++.| ++-+..||...
T Consensus 202 ~~~~a~~~~~~l~~~~~i-~iE~P~~---~~~~~~~l~~~---~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~ 273 (371)
T 2ps2_A 202 SVETALRLLRLLPHGLDF-ALEAPCA---TWRECISLRRK---TDIPIIYDELATNEMSIVKILADDAAEGIDLKISKA 273 (371)
T ss_dssp CHHHHHHHHHHSCTTCCC-EEECCBS---SHHHHHHHHTT---CCSCEEESTTCCSHHHHHHHHHHTCCSEEEEEHHHH
T ss_pred CHHHHHHHHHHHHhhcCC-cCcCCcC---CHHHHHHHHhh---CCCCEEeCCCcCCHHHHHHHHHhCCCCEEEechhhc
Confidence 457787877762124566 6554344 46777888764 367877555555778888888877 55667888543
No 477
>3iuu_A MLRC-like, putative metallopeptidase; YP_676511.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 2.13A {Mesorhizobium SP}
Probab=31.38 E-value=54 Score=26.92 Aligned_cols=75 Identities=9% Similarity=-0.016 Sum_probs=40.7
Q ss_pred CCccEEEEcCC-------CCCCCHHHHHHHHHccCCCCCCcEEEEecCC-CHHHHHHHHHcCCceEEeCC-CCHHHHHHH
Q 044790 21 DQIDLVLTEVL-------MPCLSGIGLLRKIMNHKTCKNIPVIMMSSHD-SMSIVFKCLSKGAVYFLVKP-IRKNELQNL 91 (162)
Q Consensus 21 ~~~DlvllD~~-------mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~-~~~~~~~a~~~Ga~~~l~KP-~~~~~L~~~ 91 (162)
.++|-|++|++ +++.. .+++++||+.- .+++||.+--... +.....-...-.+..|=.-| ++..+=-.+
T Consensus 95 ~p~Dgv~L~LHGAmv~eg~~D~E-GdlL~rvR~~v-Gp~vpI~~slDlH~Nvt~~mv~~aD~l~~yrtyPH~D~~etg~r 172 (495)
T 3iuu_A 95 QDFDAICLDLHGATLAEHTLDTE-GYLLSRLREVV-GNDIMISLALDLHAYLTPQMVEQATIITSFRTTPHADIEETGVR 172 (495)
T ss_dssp SCCSEEEEEECSCCCBSSCSSHH-HHHHHHHHHHH-TTTSEEEEEECTTCCCCHHHHHHCSEEEECCCSSCCCHHHHHHH
T ss_pred CCCCEEEEeccCcEeecCCCCch-HHHHHHHHHHh-CCCCeEEEEeCCCCCccHHHHhhCCEEEEcCCCCccCHHHHHHH
Confidence 68999999994 33444 48999999841 2788887655422 22222111122333455556 444443333
Q ss_pred HHHHHH
Q 044790 92 WQHVWR 97 (162)
Q Consensus 92 i~~~l~ 97 (162)
.-+++.
T Consensus 173 aa~lL~ 178 (495)
T 3iuu_A 173 AMTLLD 178 (495)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 478
>3tqp_A Enolase; energy metabolism, lyase; 2.20A {Coxiella burnetii}
Probab=31.32 E-value=1.5e+02 Score=23.61 Aligned_cols=80 Identities=13% Similarity=0.030 Sum_probs=49.5
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecC-C--CHHHHHHHHHcCC-ceEEeCCC
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSH-D--SMSIVFKCLSKGA-VYFLVKPI 83 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~-~--~~~~~~~a~~~Ga-~~~l~KP~ 83 (162)
+..++++++++.-.+++++.+.=-++..| ++-.++|++.- ..||-++... . ......++++.++ +-+..|+-
T Consensus 264 t~~eai~~~~~ll~~y~i~~IEdPl~~dD-~eg~~~L~~~~---~~pI~ivGDel~vt~~~~~~~~i~~~a~d~i~iKv~ 339 (428)
T 3tqp_A 264 TSEEMIDRLTEWTKKYPVISIEDGLSEND-WAGWKLLTERL---ENKVQLVGDDIFVTNPDILEKGIKKNIANAILVKLN 339 (428)
T ss_dssp CHHHHHHHHHHHHHHSCEEEEECCSCTTC-HHHHHHHHHHH---TTTSEEEESTTTTTCHHHHHHHHHTTCCSEEEECHH
T ss_pred CHHHHHHHHHHHHhhcccceEeCCCCccc-HHHHHHHHHhc---CCCcceeccccccCCHHHHHHHHHhCCCCEEEeccc
Confidence 56888887765114688888876665544 56667776542 4466545543 2 6777888888775 55677875
Q ss_pred CHHHHHHH
Q 044790 84 RKNELQNL 91 (162)
Q Consensus 84 ~~~~L~~~ 91 (162)
..--|.+.
T Consensus 340 ~iGGiTea 347 (428)
T 3tqp_A 340 QIGTLTET 347 (428)
T ss_dssp HHCCHHHH
T ss_pred ccCCHHHH
Confidence 44333333
No 479
>3r8r_A Transaldolase; pentose phosphate pathway, schiff bases; 1.90A {Bacillus subtilis}
Probab=31.28 E-value=97 Score=22.34 Aligned_cols=73 Identities=15% Similarity=0.039 Sum_probs=45.1
Q ss_pred EEEcCHHHHHHHHHhhCCCccEEE------EcCCCCCCCHHHHHHHHHccCCC-CCCcEEEEecCCCHHHHHHHHHcCCc
Q 044790 4 IAVENGLQAWKILEDLMDQIDLVL------TEVLMPCLSGIGLLRKIMNHKTC-KNIPVIMMSSHDSMSIVFKCLSKGAV 76 (162)
Q Consensus 4 ~~a~~~~eal~~l~~~~~~~Dlvl------lD~~mp~~~g~~~~~~ir~~~~~-~~~piI~lt~~~~~~~~~~a~~~Ga~ 76 (162)
+.+=+..+|+...+. ..+.|- .|+ +.+|+++++.|...-.. ..-..|+..+......+.++..+|++
T Consensus 108 TlifS~~Qa~~Aa~A---Ga~yISPfvgRi~d~---~~dG~~~v~~i~~~~~~~~~~t~ilaAS~R~~~~v~~~a~~G~d 181 (212)
T 3r8r_A 108 TLIFNANQALLAARA---GATYVSPFLGRLDDI---GHNGLDLISEVKQIFDIHGLDTQIIAASIRHPQHVTEAALRGAH 181 (212)
T ss_dssp EEECSHHHHHHHHHH---TCSEEEEBHHHHHHT---TSCHHHHHHHHHHHHHHHTCCCEEEEBSCCSHHHHHHHHHTTCS
T ss_pred EEeCCHHHHHHHHHc---CCeEEEeccchhhhc---CCChHHHHHHHHHHHHHcCCCCEEEEecCCCHHHHHHHHHcCCC
Confidence 344456666666555 234442 243 57888888888652111 12335556667788899999999999
Q ss_pred eEEeCC
Q 044790 77 YFLVKP 82 (162)
Q Consensus 77 ~~l~KP 82 (162)
-.-..|
T Consensus 182 ~~Tip~ 187 (212)
T 3r8r_A 182 IGTMPL 187 (212)
T ss_dssp EEEECH
T ss_pred EEEcCH
Confidence 665444
No 480
>3ekg_A Mandelate racemase/muconate lactonizing enzyme; structural genomics, nysgrc, L-rhamnonate dehydratase,target PSI-2; HET: TLA; 1.60A {Azotobacter vinelandii avop} PDB: 2oz3_A*
Probab=31.14 E-value=1.3e+02 Score=23.82 Aligned_cols=79 Identities=9% Similarity=-0.053 Sum_probs=46.3
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCC--CHHHHHHHHHcCCceE-EeCCCC
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHD--SMSIVFKCLSKGAVYF-LVKPIR 84 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~--~~~~~~~a~~~Ga~~~-l~KP~~ 84 (162)
+..+|+++++.. .++++.++.=-+|..+ ++-+++|++.. .+||.+.+... ......++++.|+-++ ..|+..
T Consensus 222 ~~~~A~~~~~~L-e~~~l~~iEeP~~~~d-~~~~a~l~~~~---~~pi~Ia~gE~~~~~~~~~~li~~~a~dii~~d~~~ 296 (404)
T 3ekg_A 222 DLNYATRLARGA-REYGLKWIEEALPPDD-YWGYAELRRNA---PTGMMVTTGEHEATRWGFRMLLEMGCCDIIQPDVGW 296 (404)
T ss_dssp CHHHHHHHHHHH-GGGTCCEEECCSCTTC-HHHHHHHHHHS---CTTCEEEECTTCCHHHHHHHHHHTTCCSEECCCTTT
T ss_pred CHHHHHHHHHHH-hhcCCcEEecCCCccc-HHHHHHHHHhc---CCCeEEEecCccCCHHHHHHHHHcCCCCeEecChhh
Confidence 456777777664 4577777765554333 56667777643 46654444422 3345667788875555 567765
Q ss_pred HHHHHHH
Q 044790 85 KNELQNL 91 (162)
Q Consensus 85 ~~~L~~~ 91 (162)
.-=|...
T Consensus 297 ~GGitea 303 (404)
T 3ekg_A 297 CGGVTEL 303 (404)
T ss_dssp TTHHHHH
T ss_pred cCCccHH
Confidence 5444443
No 481
>4h1z_A Enolase Q92ZS5; dehydratase, magnesium binding site, enzyme function initiat isomerase; 2.01A {Sinorhizobium meliloti} PDB: 2ppg_A
Probab=31.12 E-value=1.9e+02 Score=22.66 Aligned_cols=71 Identities=8% Similarity=0.125 Sum_probs=46.5
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCC
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPI 83 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~ 83 (162)
+..+|+++++.. .++++.++.=-+|.. .++-+++|++.. .+||..==.........++++.|+.+++..-+
T Consensus 244 ~~~~A~~~~~~l-~~~~l~~iEqP~~~~-d~~~~~~l~~~~---~iPIa~dE~~~~~~~~~~~i~~~a~div~~d~ 314 (412)
T 4h1z_A 244 TASEAVALIKAM-EPHGLWFAEAPVRTE-DIDGLARVAASV---STAIAVGEEWRTVHDMVPRVARRALAIVQPEM 314 (412)
T ss_dssp CHHHHHHHHHHH-GGGCEEEEECCSCTT-CHHHHHHHHHHC---SSEEEECTTCCSHHHHHHHHHTTCCSEECCCH
T ss_pred CHHHHHHHHHhh-cccccceecCCCCcc-chHHHHHHHhhc---CCccccCCcccchHhHHHHHHcCCCCEEEecC
Confidence 567888887764 568888876555443 366677787653 56765322233566778888999888876443
No 482
>2ozt_A TLR1174 protein; structural genomics, O-succinylbenzoate synthase, PSI, protein structure initiative; 1.42A {Synechococcus elongatus} PDB: 3h7v_A
Probab=31.06 E-value=1.3e+02 Score=22.87 Aligned_cols=77 Identities=16% Similarity=0.101 Sum_probs=46.4
Q ss_pred CHHHHHHHHHhhCCCc---cEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceE-EeCCC
Q 044790 8 NGLQAWKILEDLMDQI---DLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYF-LVKPI 83 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~---DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~-l~KP~ 83 (162)
+..+|+++++.. .++ ++..+.=-+|..+ ++-++.|++. ..+||..==.........++++.|+.++ ..||.
T Consensus 173 ~~~~A~~~~~~l-~~~~~~~i~~iEqP~~~~d-~~~~~~l~~~---~~ipIa~dEs~~~~~~~~~~~~~~a~~~i~ik~~ 247 (332)
T 2ozt_A 173 DRATANRWFAWL-DRHGNGKIEYVEQPLPPDQ-WQALLSLAQT---VTTAIALDESVVSAAEVQRWVDRGWPGFFVIKTA 247 (332)
T ss_dssp CHHHHHHHHHHH-HHHCCTTEEEEECCSCTTC-HHHHHHHHHH---CSSCEEESTTCCSHHHHHHHHHTTCCSEEEECHH
T ss_pred CHHHHHHHHHHH-HhhccCCcceeECCCCCCC-HHHHHHHHHh---CCCCEEeCCCCCCHHHHHHHHHhCCCCEEEEChh
Confidence 456777766553 345 7877766555433 5666777654 2466553222235677788889987665 88985
Q ss_pred CHHHHH
Q 044790 84 RKNELQ 89 (162)
Q Consensus 84 ~~~~L~ 89 (162)
..--+.
T Consensus 248 ~~GGi~ 253 (332)
T 2ozt_A 248 LFGDPD 253 (332)
T ss_dssp HHSCHH
T ss_pred hhCCHH
Confidence 443343
No 483
>4hjf_A Ggdef family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, EAL domain, signaling protein; HET: MSE C2E; 1.75A {Caulobacter crescentus}
Probab=30.99 E-value=43 Score=25.70 Aligned_cols=75 Identities=9% Similarity=0.133 Sum_probs=47.3
Q ss_pred CCccEEEEcCCC----CC-CCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCce----EEeCCCCHHHHHHH
Q 044790 21 DQIDLVLTEVLM----PC-LSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVY----FLVKPIRKNELQNL 91 (162)
Q Consensus 21 ~~~DlvllD~~m----p~-~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~----~l~KP~~~~~L~~~ 91 (162)
-++|.|=+|-.+ .. .....+++.|-.......+.|| .-+-+..+....+.+.|++- |+.||...+++...
T Consensus 246 lp~d~iKID~sfv~~~~~~~~~~~iv~~ii~la~~lg~~vv-AEGVEt~~q~~~L~~lG~d~~QGy~~~~P~~~~~~~~~ 324 (340)
T 4hjf_A 246 LPFDTLKIDRYFVRTMGNNAGSAKIVRSVVKLGQDLDLEVV-AEGVENAEMAHALQSLGCDYGQGFGYAPALSPQEAEVY 324 (340)
T ss_dssp SCCSEEEECHHHHHHTTTCHHHHHHHHHHHHHHHHHTCEEE-EECCCSHHHHHHHHHTTCCEEESTTTCCSBCHHHHHHH
T ss_pred CCCChhcccHHhhhcccCCHhHHHHHHHHHHHHHHcCCEEE-EEeCCcHHHHHHHHHcCCCEeecCccccCCCHHHHHHH
Confidence 577888777532 21 2223445554332211345554 55567777788888899983 37899999999988
Q ss_pred HHHHH
Q 044790 92 WQHVW 96 (162)
Q Consensus 92 i~~~l 96 (162)
|++..
T Consensus 325 l~~~~ 329 (340)
T 4hjf_A 325 LNEAY 329 (340)
T ss_dssp HHHHH
T ss_pred HHhcc
Confidence 87643
No 484
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=30.94 E-value=64 Score=24.03 Aligned_cols=72 Identities=7% Similarity=0.116 Sum_probs=43.1
Q ss_pred CccEEEEcCCCCCCCH---HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHHHh
Q 044790 22 QIDLVLTEVLMPCLSG---IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVWRK 98 (162)
Q Consensus 22 ~~DlvllD~~mp~~~g---~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 98 (162)
.+.+||+|= ...++. -.+++.+.... ....+|+++... ......+..-+..+-.+|++.+++...|...+..
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~--~~~~~il~~~~~--~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~ 207 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYS--GVTRFCLICNYV--TRIIDPLASQCSKFRFKALDASNAIDRLRFISEQ 207 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTT--TTEEEEEEESCG--GGSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHT
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcC--CCceEEEEeCch--hhCcchhhccCceEEeCCCCHHHHHHHHHHHHHH
Confidence 456999984 222222 23444554433 345566665432 2233444444567888899999999999887764
No 485
>3sbf_A Mandelate racemase / muconate lactonizing enzyme; enolase fold, acid sugar dehydratase, D-araninonate, isomera; HET: EPE D8T; 1.50A {Vibrionales bacterium swat-3} PDB: 3r25_A 3dfh_A 4gis_A 4gir_A 4ggh_A 3gy1_A
Probab=30.92 E-value=74 Score=24.96 Aligned_cols=73 Identities=10% Similarity=0.052 Sum_probs=42.3
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcC-CceEEeCCCCH
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKG-AVYFLVKPIRK 85 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~G-a~~~l~KP~~~ 85 (162)
+..+|+++++.. ..+++..+.--+|..+ ++.+++|++. ..+||+.==.........++++.| ++-+..|+...
T Consensus 213 ~~~~A~~~~~~L-~~~~i~~iEqP~~~~~-~~~~~~l~~~---~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~ 286 (401)
T 3sbf_A 213 FPNQAIQFAKEV-EQYKPYFIEDILPPNQ-TEWLDNIRSQ---SSVSLGLGELFNNPEEWKSLIANRRIDFIRCHVSQI 286 (401)
T ss_dssp CHHHHHHHHHHH-GGGCCSCEECSSCTTC-GGGHHHHHTT---CCCCEEECTTCCSHHHHHHHHHTTCCSEECCCGGGG
T ss_pred CHHHHHHHHHHH-HhcCCCEEECCCChhH-HHHHHHHHhh---CCCCEEeCCccCCHHHHHHHHhcCCCCEEecCcccc
Confidence 345666665543 3445555554444322 4556777654 357776544445677788888887 45556777543
No 486
>1chr_A Chloromuconate cycloisomerase; 3.00A {Ralstonia eutropha} PDB: 2chr_A
Probab=30.85 E-value=1.5e+02 Score=22.77 Aligned_cols=80 Identities=14% Similarity=0.162 Sum_probs=48.2
Q ss_pred HHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcC-CceEEeCCCCH--
Q 044790 9 GLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKG-AVYFLVKPIRK-- 85 (162)
Q Consensus 9 ~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~G-a~~~l~KP~~~-- 85 (162)
..+|+++++.. ..+++..++--+|..+ ++.++.|++.. .+||+.==.-.......++++.| ++-+..|+...
T Consensus 201 ~~~a~~~~~~l-~~~~i~~iEqP~~~~~-~~~~~~l~~~~---~iPia~dE~~~~~~~~~~~~~~~~~d~v~~k~~~~GG 275 (370)
T 1chr_A 201 EQVASVYIPEL-EALGVELIEQPVGREN-TQALRRLSDNN---RVAIMADESLSTLASAFDLARDRSVDVFSLKLCNMGG 275 (370)
T ss_dssp TTHHHHHTHHH-HTTTEEEEECCSCTTC-HHHHHHHHHHS---CSEEEESSSCCSHHHHHHHHTTTSCSEEEECTTTSCS
T ss_pred HHHHHHHHHHH-HhcCCCEEECCCCccc-HHHHHHHHhhC---CCCEEeCCCcCCHHHHHHHHHcCCCCEEEECccccCC
Confidence 34555555443 3467777765454433 66678887653 57776543444667778888876 66678888654
Q ss_pred -HHHHHHHH
Q 044790 86 -NELQNLWQ 93 (162)
Q Consensus 86 -~~L~~~i~ 93 (162)
.+.++.+.
T Consensus 276 it~~~~i~~ 284 (370)
T 1chr_A 276 VSATQKIAA 284 (370)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 44444433
No 487
>3iv3_A Tagatose 1,6-diphosphate aldolase 2; TIM barrel, phosphate binding, tagatose-bisphosphate aldolas tagatose-1,6-bisphosphate aldolase; HET: MSE; 1.80A {Streptococcus mutans} PDB: 3mhf_A 3mhg_A 3jrk_A 3kao_A* 3myp_A 3myo_A
Probab=30.80 E-value=64 Score=25.00 Aligned_cols=60 Identities=20% Similarity=0.197 Sum_probs=36.8
Q ss_pred CCccEEEEcCCCC-----CC-------CHHHHHHHHHccCCCCCCcEEEEecCCCHHH----HHHHHHcCC--ceEEe
Q 044790 21 DQIDLVLTEVLMP-----CL-------SGIGLLRKIMNHKTCKNIPVIMMSSHDSMSI----VFKCLSKGA--VYFLV 80 (162)
Q Consensus 21 ~~~DlvllD~~mp-----~~-------~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~----~~~a~~~Ga--~~~l~ 80 (162)
-.+|++=+.+--. ++ +.-+.++.+++......+|+|++++-...+. +..|+++|+ .+++.
T Consensus 202 lGaDv~Kve~p~~~~~v~g~~~~~~~y~~~ea~~~f~~~~~a~~~P~v~lsgG~~~~~fl~~v~~A~~aGa~f~Gv~~ 279 (332)
T 3iv3_A 202 FGIDVLKVEVPVNMVYVEGFAEGEVVYSKEEAAQAFREQEASTDLPYIYLSAGVSAELFQETLVFAHKAGAKFNGVLC 279 (332)
T ss_dssp GCCSEEEECCSSCGGGBTTTCSSCCCBCHHHHHHHHHHHHHTCSSCEEEECTTCCHHHHHHHHHHHHHHTCCCCEEEE
T ss_pred cCCcEEEEecCCChhhhcccccccccccHHHHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCCcceEEe
Confidence 4688887765221 11 2235544444422226899999998776544 445778899 99975
No 488
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*
Probab=30.80 E-value=1.8e+02 Score=22.30 Aligned_cols=61 Identities=11% Similarity=0.077 Sum_probs=43.7
Q ss_pred HHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 9 GLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 9 ~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
..+.++.+.+ ..+|+|.+-...|. .+++++++.. .++|++-. ...+....+.+.|+|.++.
T Consensus 111 ~~~~~~~~~~--~g~~~V~~~~g~~~---~~~i~~~~~~----g~~v~~~v--~t~~~a~~a~~~GaD~i~v 171 (369)
T 3bw2_A 111 YDAKLAVLLD--DPVPVVSFHFGVPD---REVIARLRRA----GTLTLVTA--TTPEEARAVEAAGADAVIA 171 (369)
T ss_dssp HHHHHHHHHH--SCCSEEEEESSCCC---HHHHHHHHHT----TCEEEEEE--SSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHh--cCCCEEEEeCCCCc---HHHHHHHHHC----CCeEEEEC--CCHHHHHHHHHcCCCEEEE
Confidence 3666777777 78999988765553 5788888763 45655433 3566788899999998866
No 489
>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A*
Probab=30.66 E-value=2e+02 Score=22.62 Aligned_cols=39 Identities=10% Similarity=0.060 Sum_probs=26.9
Q ss_pred HHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 38 IGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 38 ~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
++.+++||+. ..+||++=.. ...+.+..+.+.|++.++.
T Consensus 241 ~~~i~~lr~~---~~~PvivKgv-~~~e~A~~a~~aGad~I~v 279 (392)
T 2nzl_A 241 WEDIKWLRRL---TSLPIVAKGI-LRGDDAREAVKHGLNGILV 279 (392)
T ss_dssp HHHHHHHC-----CCSCEEEEEE-CCHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHh---hCCCEEEEec-CCHHHHHHHHHcCCCEEEe
Confidence 4456666654 3688887322 3578899999999999987
No 490
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=30.62 E-value=1e+02 Score=24.30 Aligned_cols=55 Identities=9% Similarity=0.152 Sum_probs=37.7
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEe
Q 044790 21 DQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLV 80 (162)
Q Consensus 21 ~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~ 80 (162)
...|+||+-+.-+ ..-..++..+|... +.++||+.+. +.........+|++..+.
T Consensus 67 ~~A~~viv~~~~~-~~n~~i~~~ar~~~--p~~~Iiara~--~~~~~~~L~~~Gad~Vi~ 121 (413)
T 3l9w_A 67 AKAEVLINAIDDP-QTNLQLTEMVKEHF--PHLQIIARAR--DVDHYIRLRQAGVEKPER 121 (413)
T ss_dssp TTCSEEEECCSSH-HHHHHHHHHHHHHC--TTCEEEEEES--SHHHHHHHHHTTCSSCEE
T ss_pred CccCEEEECCCCh-HHHHHHHHHHHHhC--CCCeEEEEEC--CHHHHHHHHHCCCCEEEC
Confidence 4578887765432 22345567777765 7788887775 566777888899998875
No 491
>2qde_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-II, NYSGXRC, enolase, structural genomics, protei structure initiative, PSI-2; 1.93A {Azoarcus SP}
Probab=30.55 E-value=97 Score=24.14 Aligned_cols=73 Identities=16% Similarity=0.232 Sum_probs=44.5
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcC-CceEEeCCCCH
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKG-AVYFLVKPIRK 85 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~G-a~~~l~KP~~~ 85 (162)
+..+++++++.. ..+++..+.--+|. +-++.+++|++. ..+||+.-=.........++++.| ++-+..||...
T Consensus 201 ~~~~a~~~~~~l-~~~~i~~iEqP~~~-~~~~~~~~l~~~---~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~ 274 (397)
T 2qde_A 201 TYDQALTTIRAL-EKYNLSKIEQPLPA-WDLDGMARLRGK---VATPIYADESAQELHDLLAIINKGAADGLMIKTQKA 274 (397)
T ss_dssp CHHHHHHHHHHH-GGGCCSCEECCSCT-TCHHHHHHHHTT---CSSCEEESTTCCSHHHHHHHHHHTCCSEEEECHHHH
T ss_pred CHHHHHHHHHHH-HhCCCCEEECCCCh-hhHHHHHHHHhh---CCCCEEEeCCcCCHHHHHHHHHcCCCCEEEEecccc
Confidence 456666666543 34555555543443 336777888764 367776544445677788888876 66667887543
No 492
>3dg3_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding; 1.60A {Mycobacterium smegmatis} PDB: 3dg6_A* 3dg7_A*
Probab=30.53 E-value=1.3e+02 Score=23.20 Aligned_cols=73 Identities=19% Similarity=0.335 Sum_probs=46.0
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcC-CceEEeCCCCH
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKG-AVYFLVKPIRK 85 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~G-a~~~l~KP~~~ 85 (162)
+..+|+++++.. ..+++..+.--++. +-++.++.|++. ..+||+.-=.........++++.| ++-+..|+...
T Consensus 197 ~~~~a~~~~~~l-~~~~i~~iEqP~~~-~d~~~~~~l~~~---~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~ 270 (367)
T 3dg3_A 197 SAAESLRAMREM-ADLDLLFAEELCPA-DDVLSRRRLVGQ---LDMPFIADESVPTPADVTREVLGGSATAISIKTART 270 (367)
T ss_dssp CHHHHHHHHHHT-TTSCCSCEESCSCT-TSHHHHHHHHHH---CSSCEEECTTCSSHHHHHHHHHHTSCSEEEECHHHH
T ss_pred CHHHHHHHHHHH-HHhCCCEEECCCCc-ccHHHHHHHHHh---CCCCEEecCCcCCHHHHHHHHHcCCCCEEEeehhhh
Confidence 456777777663 45666555543443 236677788765 367877554445677778888877 55667777543
No 493
>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A*
Probab=30.52 E-value=1.4e+02 Score=22.99 Aligned_cols=75 Identities=5% Similarity=-0.029 Sum_probs=46.1
Q ss_pred HHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHH---Hc-cCCCCCCcEEEEecCCCHHHHHHHHHcCCceEE-eCCC
Q 044790 9 GLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKI---MN-HKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFL-VKPI 83 (162)
Q Consensus 9 ~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~i---r~-~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l-~KP~ 83 (162)
.++..+++.. .|++++=....+ -|..+++.+ .+ .. ..+|||.... +..|..+++ ..|-
T Consensus 275 ~~~l~~~~~~----adv~v~ps~~E~-~~~~~lEAm~Kl~eYla--~G~PVIas~~----------v~~~~~G~l~v~~~ 337 (406)
T 2hy7_A 275 HAQTIGYIKH----ARFGIAPYASEQ-VPVYLADSSMKLLQYDF--FGLPAVCPNA----------VVGPYKSRFGYTPG 337 (406)
T ss_dssp HHHHHHHHHT----CSEEECCBSCSC-CCTTHHHHCHHHHHHHH--HTCCEEEEGG----------GTCSCSSEEEECTT
T ss_pred HHHHHHHHHh----cCEEEECCCccc-CchHHHHHHHHHHHHhh--CCCcEEEehh----------cccCcceEEEeCCC
Confidence 4555555554 687776433222 222233322 00 11 4788886432 456778999 9999
Q ss_pred CHHHHHHHHHHHHHhcc
Q 044790 84 RKNELQNLWQHVWRKCH 100 (162)
Q Consensus 84 ~~~~L~~~i~~~l~~~~ 100 (162)
+.++|.++|..++....
T Consensus 338 d~~~la~ai~~ll~~~~ 354 (406)
T 2hy7_A 338 NADSVIAAITQALEAPR 354 (406)
T ss_dssp CHHHHHHHHHHHHHCCC
T ss_pred CHHHHHHHHHHHHhCcc
Confidence 99999999999987543
No 494
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} PDB: 3vcr_A
Probab=30.51 E-value=1.5e+02 Score=21.35 Aligned_cols=81 Identities=12% Similarity=0.183 Sum_probs=52.8
Q ss_pred EcCHHHHHHH---HHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcCCceEEeCC
Q 044790 6 VENGLQAWKI---LEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKGAVYFLVKP 82 (162)
Q Consensus 6 a~~~~eal~~---l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~~~l~KP 82 (162)
..+.++++.. +.+ ..+++|=+.+.- .++++.++.|++.- +. .+|-...--..+.+..+.++|++-.++.-
T Consensus 21 ~~~~~~a~~~a~al~~--gGi~~iEvt~~t--~~a~~~I~~l~~~~--p~-~~IGAGTVlt~~~a~~ai~AGA~fivsP~ 93 (217)
T 3lab_A 21 IDDLVHAIPMAKALVA--GGVHLLEVTLRT--EAGLAAISAIKKAV--PE-AIVGAGTVCTADDFQKAIDAGAQFIVSPG 93 (217)
T ss_dssp CSCGGGHHHHHHHHHH--TTCCEEEEETTS--TTHHHHHHHHHHHC--TT-SEEEEECCCSHHHHHHHHHHTCSEEEESS
T ss_pred cCCHHHHHHHHHHHHH--cCCCEEEEeCCC--ccHHHHHHHHHHHC--CC-CeEeeccccCHHHHHHHHHcCCCEEEeCC
Confidence 3344444444 334 567776665554 46999999998754 55 46666666689999999999997666544
Q ss_pred CCHHHHHHHHHH
Q 044790 83 IRKNELQNLWQH 94 (162)
Q Consensus 83 ~~~~~L~~~i~~ 94 (162)
++ .++.+..++
T Consensus 94 ~~-~evi~~~~~ 104 (217)
T 3lab_A 94 LT-PELIEKAKQ 104 (217)
T ss_dssp CC-HHHHHHHHH
T ss_pred Cc-HHHHHHHHH
Confidence 54 445544444
No 495
>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei}
Probab=30.32 E-value=17 Score=22.38 Aligned_cols=51 Identities=12% Similarity=0.054 Sum_probs=30.9
Q ss_pred cCHHHHHHHHHhhCCCccEEEEcCCCC-CCCHHHHHHHHHccCCCCCCcEEEEe
Q 044790 7 ENGLQAWKILEDLMDQIDLVLTEVLMP-CLSGIGLLRKIMNHKTCKNIPVIMMS 59 (162)
Q Consensus 7 ~~~~eal~~l~~~~~~~DlvllD~~mp-~~~g~~~~~~ir~~~~~~~~piI~lt 59 (162)
.....+..++.+ ...+.-.+|+..- ..+.-++.+.++.......+|+|++-
T Consensus 33 p~C~~ak~~L~~--~~i~y~~vdI~~~~~~~~~~~~~~l~~~~g~~~vP~l~i~ 84 (103)
T 3nzn_A 33 VWCKKTKKLLTD--LGVDFDYVYVDRLEGKEEEEAVEEVRRFNPSVSFPTTIIN 84 (103)
T ss_dssp HHHHHHHHHHHH--HTBCEEEEEGGGCCHHHHHHHHHHHHHHCTTCCSCEEEET
T ss_pred chHHHHHHHHHH--cCCCcEEEEeeccCcccHHHHHHHHHHhCCCCccCEEEEC
Confidence 345677777777 4566666666542 12334556666543334789999884
No 496
>3fs2_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, bruciellla melitensis, DAHP synthetase I, cytoplasm, lipopolysaccharide biosynthesis; HET: PG4; 1.85A {Brucella melitensis}
Probab=30.17 E-value=1.8e+02 Score=22.16 Aligned_cols=67 Identities=13% Similarity=0.181 Sum_probs=41.0
Q ss_pred CHHHHHHHHHhhCCCccEEEEcCCC--------CCCCHHHHHHHHHccCCCCCCcEEEEecCC------------C----
Q 044790 8 NGLQAWKILEDLMDQIDLVLTEVLM--------PCLSGIGLLRKIMNHKTCKNIPVIMMSSHD------------S---- 63 (162)
Q Consensus 8 ~~~eal~~l~~~~~~~DlvllD~~m--------p~~~g~~~~~~ir~~~~~~~~piI~lt~~~------------~---- 63 (162)
+-..|++.+.+. ...+++||.... -++.. +..+|+ .++||++-+.+. .
T Consensus 170 ei~~ave~i~~~-Gn~~iiL~erg~~y~~~~~~vdl~~---i~~lk~----~~~PV~~D~sHsvq~p~~~~~~s~G~r~~ 241 (298)
T 3fs2_A 170 DMKNVLAKITES-GNPNVLATERGVSFGYNTLVSDMRA---LPIMAG----LGAPVIFDATHSVQQPGGQGGSTGGQREF 241 (298)
T ss_dssp GHHHHHHHHHTT-TCCCEEEEECCEECSSSCEECCTTH---HHHHHT----TTSCEEEEHHHHTCCCC--------CGGG
T ss_pred HHHHHHHHHHHc-CCCeEEEEECCCCCCCCCCccCHHH---HHHHHH----cCCcEEEcCCCccccCCcccCCCCCchhh
Confidence 346778887762 457899987542 13444 344554 278999854443 2
Q ss_pred -HHHHHHHHHcCCceE-EeCC
Q 044790 64 -MSIVFKCLSKGAVYF-LVKP 82 (162)
Q Consensus 64 -~~~~~~a~~~Ga~~~-l~KP 82 (162)
......|..+||++. |-|-
T Consensus 242 v~~~a~AAvAlGAdGl~IE~H 262 (298)
T 3fs2_A 242 VETLARAAVAVGVAGFFIETH 262 (298)
T ss_dssp HHHHHHHHHHHCCSEEEEEEE
T ss_pred HHHHHHHHHHcCCCEEEEEec
Confidence 345667888999964 5443
No 497
>3i4k_A Muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9450D, isomerase, PSI-2, protein structure initiative; 2.20A {Corynebacterium glutamicum}
Probab=30.17 E-value=1.3e+02 Score=23.43 Aligned_cols=75 Identities=20% Similarity=0.166 Sum_probs=43.2
Q ss_pred HHHHHHHHHhhCCCccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcC-CceEEeCCCCHHH
Q 044790 9 GLQAWKILEDLMDQIDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKG-AVYFLVKPIRKNE 87 (162)
Q Consensus 9 ~~eal~~l~~~~~~~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~G-a~~~l~KP~~~~~ 87 (162)
..+|+++++.. ..+++.+++--+|.. -++.+++|++.. .+||+.==.-.......++++.| ++.+..|+...-=
T Consensus 207 ~~~A~~~~~~l-~~~~i~~iEqP~~~~-d~~~~~~l~~~~---~iPIa~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GG 281 (383)
T 3i4k_A 207 RRTALHYLPIL-AEAGVELFEQPTPAD-DLETLREITRRT---NVSVMADESVWTPAEALAVVKAQAADVIALKTTKHGG 281 (383)
T ss_dssp HHHHHHHHHHH-HHTTCCEEESCSCTT-CHHHHHHHHHHH---CCEEEESTTCSSHHHHHHHHHHTCCSEEEECTTTTTS
T ss_pred HHHHHHHHHHH-HhcCCCEEECCCChh-hHHHHHHHHhhC---CCCEEecCccCCHHHHHHHHHcCCCCEEEEcccccCC
Confidence 45555554432 234455555433332 256677776642 57766543444677778888876 6777889866433
Q ss_pred H
Q 044790 88 L 88 (162)
Q Consensus 88 L 88 (162)
|
T Consensus 282 i 282 (383)
T 3i4k_A 282 L 282 (383)
T ss_dssp H
T ss_pred H
Confidence 3
No 498
>1sgj_A Citrate lyase, beta subunit; trimer, TIM barrel, structural genomics, PSI, protein structure initiative; 1.84A {Deinococcus radiodurans} SCOP: c.1.12.5
Probab=30.14 E-value=1.7e+02 Score=21.65 Aligned_cols=81 Identities=9% Similarity=-0.144 Sum_probs=42.3
Q ss_pred HHHHHHHhhCCCccEEEEcCCCCCCC--H------HHHHHHHHccC--CCCCCcEEEEecCCCHH---HHHHHHHcCCce
Q 044790 11 QAWKILEDLMDQIDLVLTEVLMPCLS--G------IGLLRKIMNHK--TCKNIPVIMMSSHDSMS---IVFKCLSKGAVY 77 (162)
Q Consensus 11 eal~~l~~~~~~~DlvllD~~mp~~~--g------~~~~~~ir~~~--~~~~~piI~lt~~~~~~---~~~~a~~~Ga~~ 77 (162)
+.++.... ..+|.|++|++-.... . -.+...++... .....++|=+.....+. .+..++. |++.
T Consensus 20 ~~~~~a~~--~gaD~vilDlEdav~~~~~~k~~Ar~~v~~~l~~~~~~~~~~~~~VRv~~~~~~~~~~dl~~~l~-g~~~ 96 (284)
T 1sgj_A 20 DLIAKLPR--SAPDAVVIDLEDAVPGTAEAKAAARPVAHDAARDLIAAAPHLAVFVRVNALHSPYFEDDLSVLTP-ELSG 96 (284)
T ss_dssp HHHHHTTT--TCCSEEEEESSTTSCSSHHHHHHHHHHHHHHHHHHHHHSTTSEEEEECCCTTSTTHHHHGGGCCT-TSSE
T ss_pred HHHHHHHh--CCCCEEEEECCCCCCCchhhHHHHHHHHHHHHHhcccccCCCeEEEEeCCCCCHhHHHHHHHHhc-cCCE
Confidence 34455544 6799999999875555 1 23344444321 11222333333322222 4445556 8887
Q ss_pred E-EeCCCCHHHHHHHHHH
Q 044790 78 F-LVKPIRKNELQNLWQH 94 (162)
Q Consensus 78 ~-l~KP~~~~~L~~~i~~ 94 (162)
+ |+|--+.+++......
T Consensus 97 i~lPkv~s~~~v~~~~~~ 114 (284)
T 1sgj_A 97 VVVPKLEMGAEARQVAQM 114 (284)
T ss_dssp EEECSCCSHHHHHHHHHH
T ss_pred EEeCCCCCHHHHHHHHHH
Confidence 6 4555556777655443
No 499
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=30.12 E-value=1e+02 Score=22.96 Aligned_cols=42 Identities=17% Similarity=0.271 Sum_probs=30.7
Q ss_pred CCCcEEEEec-CCCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHHHh
Q 044790 51 KNIPVIMMSS-HDSMSIVFKCLSKGAVYFLVKPIRKNELQNLWQHVWRK 98 (162)
Q Consensus 51 ~~~piI~lt~-~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 98 (162)
..+|+|+... ....+ ..+.| .+++..| +.++|...|..++..
T Consensus 300 ~G~PvI~~~~~~~~~e----~v~~g-~g~lv~~-d~~~la~~i~~ll~d 342 (384)
T 1vgv_A 300 LGKPVLVMRDTTERPE----AVTAG-TVRLVGT-DKQRIVEEVTRLLKD 342 (384)
T ss_dssp GTCCEEEESSCCSCHH----HHHHT-SEEEECS-SHHHHHHHHHHHHHC
T ss_pred cCCCEEEccCCCCcch----hhhCC-ceEEeCC-CHHHHHHHHHHHHhC
Confidence 5789987654 22232 34568 8899988 999999999998753
No 500
>2oz8_A MLL7089 protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.48A {Mesorhizobium loti}
Probab=30.11 E-value=91 Score=24.26 Aligned_cols=82 Identities=12% Similarity=-0.052 Sum_probs=49.6
Q ss_pred CHHHHHHHHHhhCCC--ccEEEEcCCCCCCCHHHHHHHHHccCCCCCCcEEEEecCCCHHHHHHHHHcC-CceEEeCCCC
Q 044790 8 NGLQAWKILEDLMDQ--IDLVLTEVLMPCLSGIGLLRKIMNHKTCKNIPVIMMSSHDSMSIVFKCLSKG-AVYFLVKPIR 84 (162)
Q Consensus 8 ~~~eal~~l~~~~~~--~DlvllD~~mp~~~g~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~G-a~~~l~KP~~ 84 (162)
+..+++++++.. .. +++.++.--+|.. -++.+++|++.. ..+||+.-=.. ......++++.| ++.+..| =.
T Consensus 202 ~~~~a~~~~~~l-~~~g~~i~~iEqP~~~~-~~~~~~~l~~~~--~~iPIa~dE~~-~~~~~~~~i~~~~~d~v~ik-GG 275 (389)
T 2oz8_A 202 TSKEALTKLVAI-REAGHDLLWVEDPILRH-DHDGLRTLRHAV--TWTQINSGEYL-DLQGKRLLLEAHAADILNVH-GQ 275 (389)
T ss_dssp CHHHHHHHHHHH-HHTTCCCSEEESCBCTT-CHHHHHHHHHHC--CSSEEEECTTC-CHHHHHHHHHTTCCSEEEEC-SC
T ss_pred CHHHHHHHHHHH-HhcCCCceEEeCCCCCc-CHHHHHHHHhhC--CCCCEEeCCCC-CHHHHHHHHHcCCCCEEEEC-cC
Confidence 355666665542 23 6666665444432 366777777642 15777655455 778888888887 5666778 66
Q ss_pred HHHHHHHHHHH
Q 044790 85 KNELQNLWQHV 95 (162)
Q Consensus 85 ~~~L~~~i~~~ 95 (162)
..+.++.+...
T Consensus 276 it~a~~i~~~A 286 (389)
T 2oz8_A 276 VTDVMRIGWLA 286 (389)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666555443
Done!