BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044791
         (623 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
           A. Thaliana With Mn
 pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
           A. Thaliana With Ca
          Length = 501

 Score = 31.2 bits (69), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 362 GLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHY 417
           G  +F+QM    + PNE TF        + D  E AF   + MK+ FGI P    Y
Sbjct: 89  GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKA-FGIQPRLRSY 143


>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
           (Trigonal Crystal Form)
 pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
           (Orthorombic Crystal Form)
          Length = 136

 Score = 30.8 bits (68), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 32/138 (23%), Positives = 61/138 (44%), Gaps = 8/138 (5%)

Query: 344 DSWHLMINGYADNGLGDEGLQLFEQMRKLGLQP-NEQTFLAVFSACGSADAIEEAFIHFE 402
           ++W+ + N Y   G  DE ++ ++  + L L P + + +  + +A       +EA  +++
Sbjct: 2   EAWYNLGNAYYKQGDYDEAIEYYQ--KALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 59

Query: 403 SMKSEFGISP-GTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEP-TAEFWEALRNYARIH 460
                  + P   E +  L     K G   EA ++ ++ L  +P +AE W  L N     
Sbjct: 60  KA---LELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 116

Query: 461 GDIDLEDHAEELMVDLDP 478
           GD D      +  ++LDP
Sbjct: 117 GDYDEAIEYYQKALELDP 134


>pdb|3A8I|A Chain A, Crystal Structure Of Et-Ehred-5-Ch3-Thf Complex
 pdb|3A8I|B Chain B, Crystal Structure Of Et-Ehred-5-Ch3-Thf Complex
 pdb|3A8I|C Chain C, Crystal Structure Of Et-Ehred-5-Ch3-Thf Complex
 pdb|3A8I|D Chain D, Crystal Structure Of Et-Ehred-5-Ch3-Thf Complex
 pdb|3A8J|A Chain A, Crystal Structure Of Et-Ehred Complex
 pdb|3A8J|B Chain B, Crystal Structure Of Et-Ehred Complex
 pdb|3A8J|C Chain C, Crystal Structure Of Et-Ehred Complex
 pdb|3A8J|D Chain D, Crystal Structure Of Et-Ehred Complex
          Length = 364

 Score = 30.8 bits (68), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 9/52 (17%)

Query: 402 ESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEAL 453
           E MK  FG+  G + ++   G  G+ G+        E  LP E  A+FW AL
Sbjct: 169 EGMKPFFGVQAG-DLFIATTGYTGEAGY--------EIALPNEKAADFWRAL 211


>pdb|3A8K|A Chain A, Crystal Structure Of Etd97n-Ehred Complex
 pdb|3A8K|B Chain B, Crystal Structure Of Etd97n-Ehred Complex
 pdb|3A8K|C Chain C, Crystal Structure Of Etd97n-Ehred Complex
 pdb|3A8K|D Chain D, Crystal Structure Of Etd97n-Ehred Complex
          Length = 364

 Score = 30.4 bits (67), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 9/52 (17%)

Query: 402 ESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEAL 453
           E MK  FG+  G + ++   G  G+ G+        E  LP E  A+FW AL
Sbjct: 169 EGMKPFFGVQAG-DLFIATTGYTGEAGY--------EIALPNEKAADFWRAL 211


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.133    0.407 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,130,879
Number of Sequences: 62578
Number of extensions: 722460
Number of successful extensions: 1680
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1661
Number of HSP's gapped (non-prelim): 21
length of query: 623
length of database: 14,973,337
effective HSP length: 105
effective length of query: 518
effective length of database: 8,402,647
effective search space: 4352571146
effective search space used: 4352571146
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)