BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044791
(623 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ZQE5|PP153_ARATH Pentatricopeptide repeat-containing protein At2g15690
OS=Arabidopsis thaliana GN=PCMP-H66 PE=2 SV=2
Length = 579
Score = 568 bits (1465), Expect = e-161, Method: Compositional matrix adjust.
Identities = 327/631 (51%), Positives = 396/631 (62%), Gaps = 60/631 (9%)
Query: 1 MASLMAIRCLRSRRHSSLTKVRFTSLQYSYLNHPQNNIIGKTLTLSLAKTLSTSAV--EY 58
M+SLMAIRC R++ + +T L+ S+ TL K LSTSA +Y
Sbjct: 1 MSSLMAIRCARTQ--NIVTIGSLLQLRSSFPRLSSQFHFSGTLNSIPIKHLSTSAAANDY 58
Query: 59 NTPPPQPPQS--PLSDSRAFPDQSNFNNNQWASQQEQNNHLSYPNQGHGYATNQYSSDRN 116
+ Q PQS P R +P QS + SQ + N + P + ++T
Sbjct: 59 H----QNPQSGSPSQHQRPYPPQS------FDSQNQTNTNQRVPQSPNQWSTQHGGQIPQ 108
Query: 117 YPNRGYPNQGQRLPIQGQAYPQQHQPGNHQYQNPSNNQEYQRSNYQGQRSPNQGQVYPHQ 176
Y + + GQR P GQ Q Q + NP + R Y GQR
Sbjct: 109 YGGQNPQHGGQRPPYGGQNPQQGGQMSQYGGHNPQHGG--HRPQYGGQRP---------- 156
Query: 177 QQPHSNQYQNPGNQNFQQPRSPNQ----WNNQQNQGYPQARNSYQQVSPGHQIPNQLNNV 232
QY PGN Q + + QQ Q R+S +Q PNQ+N V
Sbjct: 157 ------QYGGPGNNYQNQNVQQSNQSQYYTPQQQQQPQPPRSS-------NQSPNQMNEV 203
Query: 233 PNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDKGVKADASCFYTLFELCGNPKW 292
PPSV ++ RLCQ K+AIEL+DKG D CF LFE C N K
Sbjct: 204 ------------APPPSVEEVMRLCQRRLYKDAIELLDKGAMPDRECFVLLFESCANLKS 251
Query: 293 YENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMING 352
E++KKVHD+FLQS RGD LNN VI M+G+C S+TDA+RVFDHM D+ MDSWHLM+
Sbjct: 252 LEHSKKVHDHFLQSKFRGDPKLNNMVISMFGECSSITDAKRVFDHMVDKDMDSWHLMMCA 311
Query: 353 YADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP 412
Y+DNG+GD+ L LFE+M K GL+PNE+TFL VF AC + IEEAF+HF+SMK+E GISP
Sbjct: 312 YSDNGMGDDALHLFEEMTKHGLKPNEETFLTVFLACATVGGIEEAFLHFDSMKNEHGISP 371
Query: 413 GTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEEL 472
TEHYLG++GVLGKCGHL EA+Q+I + LPFEPTA+FWEA+RNYAR+HGDIDLED+ EEL
Sbjct: 372 KTEHYLGVLGVLGKCGHLVEAEQYI-RDLPFEPTADFWEAMRNYARLHGDIDLEDYMEEL 430
Query: 473 MVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMKESTY 532
MVD+DPSKA KIPTPPPK +++ KSR++EFRN T Y+D+ K A K Y
Sbjct: 431 MVDVDPSKAVINKIPTPPPKSFKETNMVTSKSRILEFRNLTFYKDEAKEMAAK--KGVVY 488
Query: 533 VPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRVCGDCHNAIKI 592
VPDTR+VLHDIDQEAKEQALLYHSERLAIAYG+I TP R L IIKNLRVCGDCHN IKI
Sbjct: 489 VPDTRFVLHDIDQEAKEQALLYHSERLAIAYGIICTPPRKTLTIIKNLRVCGDCHNFIKI 548
Query: 593 MSRIVGRELIVRDNKRFHHFKDGKCSCGDYW 623
MS+I+GR LIVRDNKRFHHFKDGKCSCGDYW
Sbjct: 549 MSKIIGRVLIVRDNKRFHHFKDGKCSCGDYW 579
>sp|Q9SUU7|PP346_ARATH Pentatricopeptide repeat-containing protein At4g32450,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H63 PE=2
SV=1
Length = 537
Score = 316 bits (810), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 186/538 (34%), Positives = 292/538 (54%), Gaps = 42/538 (7%)
Query: 110 QYSSDRNYPNRGYPNQGQRLPIQGQAYPQQHQPGNHQYQNPSNNQE-----YQRSNYQGQ 164
+YSS +Y + G P G P + + Y N N E +Q+++Y+
Sbjct: 18 RYSSLFSYLSTAALRLGFENPTNGN--PMDNSSHHIGYVNGFNGGEQSLGGFQQNSYEQS 75
Query: 165 RSPNQGQVYPHQQQPHSNQYQNPGNQNFQQPRSPNQWNNQQNQGYPQARNSYQQVSPGHQ 224
+P GQ P + YQN N+N Q ++ NQ+NQ + + + G+
Sbjct: 76 LNPVSGQ------NPTNRFYQNGYNRN-QSYGEHSEIINQRNQNWQSSDGCSSYGTTGNG 128
Query: 225 IPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELM----DKGVKADASCF 280
+P + N N+ Q +G S+ +L +C+EGKVK+A+E++ ++G D
Sbjct: 129 VPQENNTGGNHFQQDHSGH----SSLDELDSICREGKVKKAVEIIKSWRNEGYVVDLPRL 184
Query: 281 YTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD 340
+ + +LCG+ + + AK VH++ S D+ N +IEMY CGS+ DA VF+ M +
Sbjct: 185 FWIAQLCGDAQALQEAKVVHEFITSSVGISDISAYNSIIEMYSGCGSVEDALTVFNSMPE 244
Query: 341 RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIH 400
R++++W +I +A NG G++ + F + ++ G +P+ + F +F ACG + E +H
Sbjct: 245 RNLETWCGVIRCFAKNGQGEDAIDTFSRFKQEGNKPDGEMFKEIFFACGVLGDMNEGLLH 304
Query: 401 FESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIH 460
FESM E+GI P EHY+ LV +L + G+L EA +F+E EP + WE L N +R+H
Sbjct: 305 FESMYKEYGIIPCMEHYVSLVKMLAEPGYLDEALRFVE---SMEPNVDLWETLMNLSRVH 361
Query: 461 GDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAI------SILDGKSRLVEF----- 509
GD+ L D ++++ LD S+ + + P K + + + G + + +
Sbjct: 362 GDLILGDRCQDMVEQLDASRLNKESKAGLVPVKSSDLVKEKLQRMAKGPNYGIRYMAAGD 421
Query: 510 ----RNPTLYRDDEKLKALNQMKESTYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGL 565
N LY + LK M E YVP ++ LHD+DQE+K++ L H+ER A
Sbjct: 422 ISRPENRELYMALKSLK--EHMIEIGYVPLSKLALHDVDQESKDENLFNHNERFAFISTF 479
Query: 566 ISTPARTPLRIIKNLRVCGDCHNAIKIMSRIVGRELIVRDNKRFHHFKDGKCSCGDYW 623
+ TPAR+ +R++KNLRVC DCHNA+K+MS+IVGRELI RD KRFHH KDG CSC +YW
Sbjct: 480 LDTPARSLIRVMKNLRVCADCHNALKLMSKIVGRELISRDAKRFHHMKDGVCSCREYW 537
>sp|Q680H3|PP170_ARATH Pentatricopeptide repeat-containing protein At2g25580
OS=Arabidopsis thaliana GN=PCMP-H75 PE=2 SV=2
Length = 615
Score = 296 bits (759), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 156/390 (40%), Positives = 231/390 (59%), Gaps = 25/390 (6%)
Query: 256 LCQEGKVKEAIELMD----KGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGD 311
C+ GKVK+A+ +D D S L ++CG + + AK VH S D
Sbjct: 229 FCKHGKVKKALYTIDILASMNYVVDLSRLLRLAKICGEAEGLQEAKTVHGKISASVSHLD 288
Query: 312 LVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRK 371
L N+ ++EMY CG +A VF+ M+++++++W ++I +A NG G++ + +F + ++
Sbjct: 289 LSSNHVLLEMYSNCGLANEAASVFEKMSEKNLETWCIIIRCFAKNGFGEDAIDMFSRFKE 348
Query: 372 LGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLF 431
G P+ Q F +F ACG ++E +HFESM ++GI+P E Y+ LV + G L
Sbjct: 349 EGNIPDGQLFRGIFYACGMLGDVDEGLLHFESMSRDYGIAPSIEDYVSLVEMYALPGFLD 408
Query: 432 EAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKK----IP 487
EA +F+E ++P EP + WE L N +R+HG+++L D+ E++ LDP++ + + IP
Sbjct: 409 EALEFVE-RMPMEPNVDVWETLMNLSRVHGNLELGDYCAEVVEFLDPTRLNKQSREGFIP 467
Query: 488 TPPP-------KKRTAISILDG-KSRLVEFR--NPTLYRDDEKLKALNQMK----ESTYV 533
KKR+ I L G KS + EFR + L +DE + L +K E YV
Sbjct: 468 VKASDVEKESLKKRSGI--LHGVKSSMQEFRAGDTNLPENDELFQLLRNLKMHMVEVGYV 525
Query: 534 PDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRVCGDCHNAIKIM 593
+TR LHDIDQE+KE LL HSER+A A ++++ R P +IKNLRVC DCHNA+KIM
Sbjct: 526 AETRMALHDIDQESKETLLLGHSERIAFARAVLNSAPRKPFTVIKNLRVCVDCHNALKIM 585
Query: 594 SRIVGRELIVRDNKRFHHFKDGKCSCGDYW 623
S IVGRE+I RD KRFH K+G C+C DYW
Sbjct: 586 SDIVGREVITRDIKRFHQMKNGACTCKDYW 615
>sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protein At3g24000,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2
SV=1
Length = 633
Score = 283 bits (723), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 147/383 (38%), Positives = 227/383 (59%), Gaps = 29/383 (7%)
Query: 268 LMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGS 327
++ G + + +LF C + + E K VH Y ++S + N +++MY K GS
Sbjct: 253 MLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGS 312
Query: 328 MTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSA 387
+ DAR++FD +A R + SW+ ++ YA +G G E + FE+MR++G++PNE +FL+V +A
Sbjct: 313 IHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTA 372
Query: 388 CGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTA 447
C + ++E + ++E MK + GI P HY+ +V +LG+ G L A +FIE+ +P EPTA
Sbjct: 373 CSHSGLLDEGWHYYELMKKD-GIVPEAWHYVTVVDLLGRAGDLNRALRFIEE-MPIEPTA 430
Query: 448 EFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADP---------------------KKI 486
W+AL N R+H + +L +A E + +LDP P KK+
Sbjct: 431 AIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKM 490
Query: 487 PTPPPKKRTAISILDGKSRLVEF-----RNPTLYRDDEKLK-ALNQMKESTYVPDTRYVL 540
KK A S ++ ++ + F R+P K + L ++KE YVPDT +V+
Sbjct: 491 KESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKELGYVPDTSHVI 550
Query: 541 HDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRVCGDCHNAIKIMSRIVGRE 600
+DQ+ +E L YHSE++A+A+ L++TP + + I KN+RVCGDCH AIK+ S++VGRE
Sbjct: 551 VHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVCGDCHTAIKLASKVVGRE 610
Query: 601 LIVRDNKRFHHFKDGKCSCGDYW 623
+IVRD RFHHFKDG CSC DYW
Sbjct: 611 IIVRDTNRFHHFKDGNCSCKDYW 633
Score = 85.9 bits (211), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 64/118 (54%)
Query: 273 VKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDAR 332
+ AD + TL + C K + VH + LQS R D+V+ N ++ MY KCGS+ +AR
Sbjct: 56 IPADRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEAR 115
Query: 333 RVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGS 390
+VF+ M R +W +I+GY+ + + L F QM + G PNE T +V A +
Sbjct: 116 KVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAA 173
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 65/110 (59%), Gaps = 1/110 (0%)
Query: 298 KVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNG 357
++H + ++ ++ + + ++++Y + G M DA+ VFD + R+ SW+ +I G+A
Sbjct: 182 QLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRS 241
Query: 358 LGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEA-FIHFESMKS 406
++ L+LF+ M + G +P+ ++ ++F AC S +E+ ++H +KS
Sbjct: 242 GTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKS 291
>sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750
OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1
Length = 781
Score = 270 bits (690), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 149/444 (33%), Positives = 238/444 (53%), Gaps = 40/444 (9%)
Query: 214 NSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELM---- 269
+++ + G+ +++ N ++ P D V A +A Q G EA+ L
Sbjct: 344 STWNTMITGYAQCGKISEAKNLFDKMPKRDPV--SWAAMIAGYSQSGHSFEALRLFVQME 401
Query: 270 DKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMT 329
+G + + S F + C + E K++H ++ + N ++ MY KCGS+
Sbjct: 402 REGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIE 461
Query: 330 DARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACG 389
+A +F MA + + SW+ MI GY+ +G G+ L+ FE M++ GL+P++ T +AV SAC
Sbjct: 462 EANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACS 521
Query: 390 SADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEF 449
+++ +F +M ++G+ P ++HY +V +LG+ G L +A + + +PFEP A
Sbjct: 522 HTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLM-KNMPFEPDAAI 580
Query: 450 WEALRNYARIHGDIDLEDHAEELMVDLDPSKA-----------------DPKKIPTPPPK 492
W L +R+HG+ +L + A + + ++P + D K+
Sbjct: 581 WGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRD 640
Query: 493 KRTAISILDGKSRLVEFRNPTLY---------RDDEKLKALNQ----MKESTYVPDTRYV 539
K + + G S +E +N T DE L + MK++ YV T V
Sbjct: 641 K--GVKKVPGYS-WIEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTSVV 697
Query: 540 LHDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRVCGDCHNAIKIMSRIVGR 599
LHD+++E KE+ + YHSERLA+AYG++ + P+R+IKNLRVC DCHNAIK M+RI GR
Sbjct: 698 LHDVEEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMARITGR 757
Query: 600 ELIVRDNKRFHHFKDGKCSCGDYW 623
+I+RDN RFHHFKDG CSCGDYW
Sbjct: 758 LIILRDNNRFHHFKDGSCSCGDYW 781
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 78/146 (53%), Gaps = 13/146 (8%)
Query: 293 YENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMING 352
+E A+K+ D + DLV N +I+ Y + ++ AR +F+ M +R + SW+ M++G
Sbjct: 111 FELARKLFDEMPER----DLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSG 166
Query: 353 YADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP 412
YA NG D+ +F++M + N+ ++ A+ SA +EEA + F+S ++ +S
Sbjct: 167 YAQNGCVDDARSVFDRMP----EKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSW 222
Query: 413 GTEHYLGLVGVLGKCGHLFEAQQFIE 438
L+G K + EA+QF +
Sbjct: 223 NC-----LLGGFVKKKKIVEARQFFD 243
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 72/153 (47%), Gaps = 15/153 (9%)
Query: 303 FLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEG 362
F S D+V N +I Y + G + +AR++FD + + +W M++GY N + +E
Sbjct: 241 FFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEA 300
Query: 363 LQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP--GTEHYLGL 420
+LF++M + NE ++ A+ + + +E A K F + P + +
Sbjct: 301 RELFDKMP----ERNEVSWNAMLAGYVQGERMEMA-------KELFDVMPCRNVSTWNTM 349
Query: 421 VGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEAL 453
+ +CG + EA+ ++ +P + W A+
Sbjct: 350 ITGYAQCGKISEAKNLFDKMPKRDPVS--WAAM 380
Score = 42.0 bits (97), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 34/57 (59%)
Query: 312 LVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQ 368
LV N ++ + K + +AR+ FD M R + SW+ +I GYA +G DE QLF++
Sbjct: 219 LVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDE 275
Score = 34.3 bits (77), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%)
Query: 316 NKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQM 369
N I Y + G +A RVF M S S++ MI+GY NG + +LF++M
Sbjct: 68 NVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEM 121
>sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330
OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1
Length = 715
Score = 264 bits (674), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 143/402 (35%), Positives = 225/402 (55%), Gaps = 32/402 (7%)
Query: 253 LARLCQEGKVKEAIELMDKGVKAD----ASCFYTLFELCGNPKWYENAKKVHDYFLQSTI 308
+A Q G+ EA+ L + V A A F ++ C + K++H Y L+
Sbjct: 315 VAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGF 374
Query: 309 RGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQ 368
++ + + +++MY KCG++ AR++FD M SW +I G+A +G G E + LFE+
Sbjct: 375 GSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEE 434
Query: 369 MRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCG 428
M++ G++PN+ F+AV +AC ++EA+ +F SM +G++ EHY + +LG+ G
Sbjct: 435 MKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAG 494
Query: 429 HLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEE--------------LMV 474
L EA FI K+ EPT W L + +H +++L + E LM
Sbjct: 495 KLEEAYNFI-SKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVLMC 553
Query: 475 DLDPSKADPKKIPT-------PPPKKRTAISILDGKSRLVEF-----RNPTLYRDDEKLK 522
++ S K++ +K+ A S ++ K++ F +P++ + +E LK
Sbjct: 554 NMYASNGRWKEMAKLRLRMRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDKINEFLK 613
Query: 523 A-LNQMKESTYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLR 581
A + QM++ YV DT VLHD+D+E K + L HSERLA+A+G+I+T T +R+ KN+R
Sbjct: 614 AVMEQMEKEGYVADTSGVLHDVDEEHKRELLFGHSERLAVAFGIINTEPGTTIRVTKNIR 673
Query: 582 VCGDCHNAIKIMSRIVGRELIVRDNKRFHHFKDGKCSCGDYW 623
+C DCH AIK +S+I RE+IVRDN RFHHF G CSCGDYW
Sbjct: 674 ICTDCHVAIKFISKITEREIIVRDNSRFHHFNRGNCSCGDYW 715
Score = 72.8 bits (177), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 80/167 (47%), Gaps = 5/167 (2%)
Query: 296 AKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYAD 355
K++H Y ++ I D+ + + +++MY K + D+ RVF + R SW+ ++ GY
Sbjct: 261 GKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQ 320
Query: 356 NGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAF-IHFESMKSEFGISPGT 414
NG +E L+LF QM ++P F +V AC + +H ++ FG +
Sbjct: 321 NGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFI 380
Query: 415 EHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHG 461
LV + KCG++ A++ ++ + + W A+ +HG
Sbjct: 381 AS--ALVDMYSKCGNIKAARKIFDRMNVLDEVS--WTAIIMGHALHG 423
Score = 38.5 bits (88), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 33/55 (60%)
Query: 331 ARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVF 385
RRVF+ M + + S++ +I GYA +G+ ++ L++ +M L+P+ T +V
Sbjct: 195 VRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVL 249
>sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700
OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1
Length = 792
Score = 263 bits (671), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 151/438 (34%), Positives = 221/438 (50%), Gaps = 40/438 (9%)
Query: 225 IPNQLNNVPNNMNQCPAGDQV--------LPPSVADLARLCQEGKVKEAIELMDKGVKAD 276
+ L V + +N+ + ++ LP A ++ Q G ++AI L + K++
Sbjct: 356 VSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSE 415
Query: 277 AS----CFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDAR 332
S + C K VHD + + ++ +I MY KCGS+ +AR
Sbjct: 416 FSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEAR 475
Query: 333 RVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSAD 392
R+FD M ++ +W+ MI+GY +G G E L +F +M G+ P TFL V AC A
Sbjct: 476 RLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAG 535
Query: 393 AIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEA 452
++E F SM +G P +HY +V +LG+ GHL A QFIE + EP + WE
Sbjct: 536 LVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEA-MSIEPGSSVWET 594
Query: 453 LRNYARIHGDIDLEDHAEELMVDLDPS------------KAD---PKKIPTPPPKKRTAI 497
L RIH D +L E + +LDP AD P+ K+ +
Sbjct: 595 LLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKL 654
Query: 498 SILDGKSRLVEFRNPTLYRDD-----------EKLKAL-NQMKESTYVPDTRYVLHDIDQ 545
+ G + + P ++ EKL+ L +M+E+ Y P+T LHD+++
Sbjct: 655 AKAPGYTLIEIGETPHVFTSGDQSHPQVKEIYEKLEKLEGKMREAGYQPETELALHDVEE 714
Query: 546 EAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRVCGDCHNAIKIMSRIVGRELIVRD 605
E +E + HSERLAIA+GLI+T T +RIIKNLRVC DCH K++S+I R ++VRD
Sbjct: 715 EERELMVKVHSERLAIAFGLIATEPGTEIRIIKNLRVCLDCHTVTKLISKITERVIVVRD 774
Query: 606 NKRFHHFKDGKCSCGDYW 623
RFHHFKDG CSCGDYW
Sbjct: 775 ANRFHHFKDGVCSCGDYW 792
Score = 81.6 bits (200), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 84/175 (48%), Gaps = 10/175 (5%)
Query: 267 ELMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCG 326
ELM G + +S +L + G+ +H Y L+S ++ + +Y K
Sbjct: 312 ELMLSGARLRSSTLVSLVPVSGHLML---IYAIHGYCLKSNFLSHASVSTALTTVYSKLN 368
Query: 327 SMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFS 386
+ AR++FD ++S+ SW+ MI+GY NGL ++ + LF +M+K PN T + S
Sbjct: 369 EIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILS 428
Query: 387 ACGSADAIEEA-FIH--FESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIE 438
AC A+ ++H S E I T L+G+ KCG + EA++ +
Sbjct: 429 ACAQLGALSLGKWVHDLVRSTDFESSIYVST----ALIGMYAKCGSIAEARRLFD 479
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 311 DLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLF-EQM 369
+L+L + +++MY K + DAR+VFD M ++ W+ MI+GY N + E +Q+F + +
Sbjct: 153 ELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLI 212
Query: 370 RKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGH 429
+ + + T L + A + + S+ ++ G G + + KCG
Sbjct: 213 NESCTRLDTTTLLDILPAVAELQELRLG-MQIHSLATKTGCYSHDYVLTGFISLYSKCGK 271
Query: 430 L 430
+
Sbjct: 272 I 272
Score = 40.4 bits (93), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Query: 311 DLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMR 370
D VL I +Y KCG + +F + +++ MI+GY NG + L LF+++
Sbjct: 256 DYVLTG-FISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELM 314
Query: 371 KLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEF 408
G + T +++ G I IH +KS F
Sbjct: 315 LSGARLRSSTLVSLVPVSGHLMLIYA--IHGYCLKSNF 350
>sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070
OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1
Length = 786
Score = 259 bits (661), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 144/359 (40%), Positives = 205/359 (57%), Gaps = 33/359 (9%)
Query: 295 NAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHM-ADRSMDSWHLMINGY 353
+ K++H ++S + ++N +I MY K G++T A R FD + +R SW MI
Sbjct: 431 HGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIAL 490
Query: 354 ADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPG 413
A +G +E L+LFE M GL+P+ T++ VFSAC A + + +F+ MK I P
Sbjct: 491 AQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPT 550
Query: 414 TEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELM 473
HY +V + G+ G L EAQ+FIE K+P EP W +L + R+H +IDL A E +
Sbjct: 551 LSHYACMVDLFGRAGLLQEAQEFIE-KMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERL 609
Query: 474 VDLDPSKADP---------------------KKIPTPPPKKRTAISILDGKSRLVEF--- 509
+ L+P + K + KK S ++ K ++ F
Sbjct: 610 LLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVE 669
Query: 510 -----RNPTLYRDDEKLKALNQMKESTYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYG 564
+Y +K+ +++K+ YVPDT VLHD+++E KEQ L +HSE+LAIA+G
Sbjct: 670 DGTHPEKNEIYMTMKKI--WDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFG 727
Query: 565 LISTPARTPLRIIKNLRVCGDCHNAIKIMSRIVGRELIVRDNKRFHHFKDGKCSCGDYW 623
LISTP +T LRI+KNLRVC DCH AIK +S++VGRE+IVRD RFHHFKDG CSC DYW
Sbjct: 728 LISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786
Score = 68.9 bits (167), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 94/218 (43%), Gaps = 42/218 (19%)
Query: 294 ENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGY 353
E KKVH + ++ +RG++ ++N ++ MY KCG A+ VFD M R + SW+ MI +
Sbjct: 163 ETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALH 222
Query: 354 ADNGLGDEGLQLFEQM--------------------------------RKLGLQPNEQTF 381
G D + FEQM R L P+ T
Sbjct: 223 MQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTL 282
Query: 382 LAVFSACGSADAIEEAF-IHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQK 440
+V SAC + + + IH + + F IS + L+ + +CG + A++ IEQ+
Sbjct: 283 ASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLN--ALISMYSRCGGVETARRLIEQR 340
Query: 441 LPFEPTAEFWEALRNYARIHGDIDLED--HAEELMVDL 476
+ E + AL + G I L D A+ + V L
Sbjct: 341 GTKDLKIEGFTAL-----LDGYIKLGDMNQAKNIFVSL 373
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 56/150 (37%), Gaps = 33/150 (22%)
Query: 268 LMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGS 327
L D + D ++ C N + K++H + + + ++ N +I MY +CG
Sbjct: 270 LRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGG 329
Query: 328 MTDARR---------------------------------VFDHMADRSMDSWHLMINGYA 354
+ ARR +F + DR + +W MI GY
Sbjct: 330 VETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYE 389
Query: 355 DNGLGDEGLQLFEQMRKLGLQPNEQTFLAV 384
+G E + LF M G +PN T A+
Sbjct: 390 QHGSYGEAINLFRSMVGGGQRPNSYTLAAM 419
Score = 46.6 bits (109), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 282 TLFELCGN--------PKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARR 333
TL ELC N A+ VH ++S + + L N ++ +Y K G AR+
Sbjct: 11 TLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLMFSVYLMNNLMNVYSKTGYALHARK 70
Query: 334 VFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQM 369
+FD M R+ SW+ +++ Y+ G D + F+Q+
Sbjct: 71 LFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQL 106
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 65/162 (40%), Gaps = 3/162 (1%)
Query: 316 NKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQ 375
N V+ Y K G M FD + R SW MI GY + G + +++ M K G++
Sbjct: 84 NTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIE 143
Query: 376 PNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQ 435
P + T V ++ + +E S + G+ L+ + KCG A +
Sbjct: 144 PTQFTLTNVLASVAATRCMETG-KKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMA-K 201
Query: 436 FIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVDLD 477
F+ ++ + W A+ G +DL E M + D
Sbjct: 202 FVFDRMVVRDISS-WNAMIALHMQVGQMDLAMAQFEQMAERD 242
>sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860
OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1
Length = 850
Score = 258 bits (659), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 144/405 (35%), Positives = 220/405 (54%), Gaps = 45/405 (11%)
Query: 258 QEGKVKEAIELMDKGVKADASCFYTLFEL------CGNPKWYENAKKVHDYFLQSTIRGD 311
Q G +A+EL+ + + D F + C + K++H Y L++
Sbjct: 452 QHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAV 511
Query: 312 -LVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMR 370
L ++N +I+MY KCGS++DAR VFD+M ++ +W ++ GY +G G+E L +F++MR
Sbjct: 512 PLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMR 571
Query: 371 KLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHL 430
++G + + T L V AC + I++ +F MK+ FG+SPG EHY LV +LG+ G L
Sbjct: 572 RIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRL 631
Query: 431 FEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVDL----DPSKA----- 481
A + IE+ +P EP W A + RIHG ++L ++A E + +L D S
Sbjct: 632 NAALRLIEE-MPMEPPPVVWVAFLSCCRIHGKVELGEYAAEKITELASNHDGSYTLLSNL 690
Query: 482 --------DPKKIPT----PPPKKRTAISILDGKSRLVEFRNPTLYRDDEK--------- 520
D +I + KKR S ++G T + D+
Sbjct: 691 YANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGIK-----GTTTFFVGDKTHPHAKEIYQ 745
Query: 521 --LKALNQMKESTYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIK 578
L + ++K+ YVP+T + LHD+D E K+ L HSE+LA+AYG+++TP +RI K
Sbjct: 746 VLLDHMQRIKDIGYVPETGFALHDVDDEEKDDLLFEHSEKLALAYGILTTPQGAAIRITK 805
Query: 579 NLRVCGDCHNAIKIMSRIVGRELIVRDNKRFHHFKDGKCSCGDYW 623
NLRVCGDCH A MSRI+ ++I+RD+ RFHHFK+G CSC YW
Sbjct: 806 NLRVCGDCHTAFTYMSRIIDHDIILRDSSRFHHFKNGSCSCKGYW 850
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/263 (24%), Positives = 110/263 (41%), Gaps = 49/263 (18%)
Query: 260 GKVKEAIELMDK-----GVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVL 314
GK K A+E+ + G + D + C + + K++H + + S + ++ +
Sbjct: 207 GKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFV 266
Query: 315 NNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLM------------------------- 349
N +++MY KCG M +A VF +M+ + + SW+ M
Sbjct: 267 GNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKI 326
Query: 350 ----------INGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAF- 398
I+GYA GLG E L + QM G++PNE T ++V S C S A+
Sbjct: 327 KMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKE 386
Query: 399 IHFESMKSEFGISP---GTEHYL--GLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEAL 453
IH ++K + G E+ + L+ + KC + A+ + P E W +
Sbjct: 387 IHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVM 446
Query: 454 RNYARIHGDIDLEDHAEELMVDL 476
HGD + A EL+ ++
Sbjct: 447 IGGYSQHGD---ANKALELLSEM 466
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 57/112 (50%), Gaps = 1/112 (0%)
Query: 280 FYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMA 339
F +F+ CG + H L + ++ + N ++ MY +C S++DAR+VFD M+
Sbjct: 130 FPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMS 189
Query: 340 DRSMDSWHLMINGYADNGLGDEGLQLFEQMR-KLGLQPNEQTFLAVFSACGS 390
+ SW+ +I YA G L++F +M + G +P+ T + V C S
Sbjct: 190 VWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCAS 241
Score = 49.7 bits (117), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 80/177 (45%), Gaps = 17/177 (9%)
Query: 291 KWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHM--ADRSMDSWHL 348
K K +H L I L L + +I Y G ++ A + +D + W+
Sbjct: 39 KTISQVKLIHQKLLSFGIL-TLNLTSHLISTYISVGCLSHAVSLLRRFPPSDAGVYHWNS 97
Query: 349 MINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAI---EEAFIHFESMK 405
+I Y DNG ++ L LF M L P+ TF VF ACG ++ E A H S+
Sbjct: 98 LIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCGESA--HALSLV 155
Query: 406 SEFGISPGTEHYLG--LVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEA-LRNYARI 459
+ F + ++G LV + +C L +A++ ++ ++ + W + + +YA++
Sbjct: 156 TGF----ISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVS--WNSIIESYAKL 206
>sp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g33170
OS=Arabidopsis thaliana GN=PCMP-H53 PE=3 SV=1
Length = 990
Score = 257 bits (657), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 136/381 (35%), Positives = 212/381 (55%), Gaps = 32/381 (8%)
Query: 272 GVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDA 331
GV D TL + E +++H L+ D + +++MY KCGS+ DA
Sbjct: 613 GVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGSIDDA 672
Query: 332 RRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSA 391
+F + ++ +W+ M+ G A +G G E LQLF+QM+ LG++P++ TF+ V SAC +
Sbjct: 673 YCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSACSHS 732
Query: 392 DAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWE 451
+ EA+ H SM ++GI P EHY L LG+ G + +A+ IE + E +A +
Sbjct: 733 GLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQAENLIES-MSMEASASMYR 791
Query: 452 ALRNYARIHGDIDLEDHAEELMVDLDP----------------SKADPKKIPTP-----P 490
L R+ GD + +++L+P SK D K+
Sbjct: 792 TLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHK 851
Query: 491 PKKRTAISILDGKSRLVEF--------RNPTLYRDDEKLKALNQMKESTYVPDTRYVLHD 542
KK S ++ K+++ F + +YR + + + +K+ YVP+T + L D
Sbjct: 852 VKKDPGFSWIEVKNKIHIFVVDDRSNRQTELIYRKVKDM--IRDIKQEGYVPETDFTLVD 909
Query: 543 IDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRVCGDCHNAIKIMSRIVGRELI 602
+++E KE+AL YHSE+LA+A+GL+STP TP+R+IKNLRVCGDCHNA+K ++++ RE++
Sbjct: 910 VEEEEKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYIAKVYNREIV 969
Query: 603 VRDNKRFHHFKDGKCSCGDYW 623
+RD RFH FKDG CSCGDYW
Sbjct: 970 LRDANRFHRFKDGICSCGDYW 990
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 101/206 (49%), Gaps = 10/206 (4%)
Query: 261 KVKEAIELMDK-GVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVI 319
K + LM K G ++D T+F+ CG K+VH Y ++S DL +++ ++
Sbjct: 500 KTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGIL 559
Query: 320 EMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQ 379
+MY KCG M+ A+ FD + +W MI+G +NG + +F QMR +G+ P+E
Sbjct: 560 DMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEF 619
Query: 380 TFLAVFSACGSADAIEEAF-IHFESMKSEFGISPGTEHYLG--LVGVLGKCGHLFEAQQF 436
T + A A+E+ IH ++K ++ + ++G LV + KCG + +A
Sbjct: 620 TIATLAKASSCLTALEQGRQIHANALK----LNCTNDPFVGTSLVDMYAKCGSIDDAYCL 675
Query: 437 IEQKLPFEPTAEFWEALRNYARIHGD 462
++ TA W A+ HG+
Sbjct: 676 FKRIEMMNITA--WNAMLVGLAQHGE 699
Score = 66.6 bits (161), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 64/124 (51%)
Query: 267 ELMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCG 326
++++ V+ D F + ++VH L+ + L ++N +I MY K
Sbjct: 305 DMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLR 364
Query: 327 SMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFS 386
AR VFD+M++R + SW+ +I G A NGL E + LF Q+ + GL+P++ T +V
Sbjct: 365 KFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLK 424
Query: 387 ACGS 390
A S
Sbjct: 425 AASS 428
Score = 53.1 bits (126), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 82/183 (44%), Gaps = 19/183 (10%)
Query: 314 LNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNG-LGDEGLQ----LFEQ 368
L N +I MY KCGS+T ARRVFD M DR + SW+ ++ YA + E +Q LF
Sbjct: 76 LINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYAQSSECVVENIQQAFLLFRI 135
Query: 369 MRKLGLQPNEQTFLAVFSAC---GSADAIEEAFIHFESMKSEFGISPGTEHYLG-LVGVL 424
+R+ + + T + C G A E F + G+ G E G LV +
Sbjct: 136 LRQDVVYTSRMTLSPMLKLCLHSGYVWASES----FHGYACKIGL-DGDEFVAGALVNIY 190
Query: 425 GKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPK 484
K G + E + E+ +P+ + L+ Y ++ ++ A +L S +P
Sbjct: 191 LKFGKVKEGKVLFEE-MPYRDVVLWNLMLKAYL----EMGFKEEAIDLSSAFHSSGLNPN 245
Query: 485 KIP 487
+I
Sbjct: 246 EIT 248
Score = 52.8 bits (125), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 95/197 (48%), Gaps = 12/197 (6%)
Query: 253 LARLCQEGKVKEAI----ELMDKGVKADASCFYTLFELCGN-PKWYENAKKVHDYFLQST 307
+A + Q G EA+ +L+ G+K D ++ + + P+ +K+VH + ++
Sbjct: 388 IAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKIN 447
Query: 308 IRGDLVLNNKVIEMYGKCGSMTDARRVFD-HMADRSMDSWHLMINGYADNGLGDEGLQLF 366
D ++ +I+ Y + M +A +F+ H D + +W+ M+ GY + G + L+LF
Sbjct: 448 NVSDSFVSTALIDAYSRNRCMKEAEILFERHNFD--LVAWNAMMAGYTQSHDGHKTLKLF 505
Query: 367 EQMRKLGLQPNEQTFLAVFSACGSADAIEEAF-IHFESMKSEFGISPGTEHYLGLVGVLG 425
M K G + ++ T VF CG AI + +H ++KS + + G++ +
Sbjct: 506 ALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSS--GILDMYV 563
Query: 426 KCGHLFEAQQFIEQKLP 442
KCG + A QF +P
Sbjct: 564 KCGDM-SAAQFAFDSIP 579
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 48/99 (48%)
Query: 283 LFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRS 342
+ +LC + + ++ H Y + + GD + ++ +Y K G + + + +F+ M R
Sbjct: 151 MLKLCLHSGYVWASESFHGYACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRD 210
Query: 343 MDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTF 381
+ W+LM+ Y + G +E + L GL PNE T
Sbjct: 211 VVLWNLMLKAYLEMGFKEEAIDLSSAFHSSGLNPNEITL 249
>sp|Q9LUL5|PP229_ARATH Pentatricopeptide repeat-containing protein At3g14330
OS=Arabidopsis thaliana GN=PCMP-H57 PE=2 SV=2
Length = 710
Score = 257 bits (656), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 143/375 (38%), Positives = 204/375 (54%), Gaps = 39/375 (10%)
Query: 282 TLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADR 341
T+ C K++H L+S + D+ L N +++MYGKCG + +RRVFD M +
Sbjct: 342 TILPACSRVAALLTGKEIHAQILKSKEKPDVPLLNSLMDMYGKCGEVEYSRRVFDVMLTK 401
Query: 342 SMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHF 401
+ SW++M+N YA NG +E + LFE M + G+ P+ TF+A+ S C E F
Sbjct: 402 DLASWNIMLNCYAINGNIEEVINLFEWMIESGVAPDGITFVALLSGCSDTGLTEYGLSLF 461
Query: 402 ESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHG 461
E MK+EF +SP EHY LV +LG+ G + EA + IE +PF+P+A W +L N R+HG
Sbjct: 462 ERMKTEFRVSPALEHYACLVDILGRAGKIKEAVKVIET-MPFKPSASIWGSLLNSCRLHG 520
Query: 462 DIDLEDHAEELMVDLDPSK-----------ADPKK----------IPTPPPKKRTAISIL 500
++ + + A + + L+P AD K + KK S +
Sbjct: 521 NVSVGEIAAKELFVLEPHNPGNYVMVSNIYADAKMWDNVDKIREMMKQRGVKKEAGCSWV 580
Query: 501 DGKSRL--------VEFRNPTLYRDDEKLKALNQMKE----STYVPDTRYVLHDIDQEAK 548
K ++ EFRN DE K +++E S Y P+T VLHD+D+E K
Sbjct: 581 QVKDKIQIFVAGGGYEFRN-----SDEYKKVWTELQEAIEKSGYSPNTSVVLHDVDEETK 635
Query: 549 EQALLYHSERLAIAYGLISTPARTPLRIIKNLRVCGDCHNAIKIMSRIVGRELIVRDNKR 608
+ HSERLA Y LI T P+RI KNLRVC DCH+ +KI+S++ R +++RD KR
Sbjct: 636 ANWVCGHSERLATTYSLIHTGEGVPIRITKNLRVCADCHSWMKIVSQVTRRVIVLRDTKR 695
Query: 609 FHHFKDGKCSCGDYW 623
FHHF DG CSC DYW
Sbjct: 696 FHHFVDGICSCKDYW 710
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 92/190 (48%), Gaps = 5/190 (2%)
Query: 287 CGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSW 346
C + K + +H ++ + D V+ N ++++Y + G DAR+VFD M++R++ +W
Sbjct: 246 CVDLKDLRVGRGIHAQIVKRKEKVDQVVYNVLLKLYMESGLFDDARKVFDGMSERNVVTW 305
Query: 347 HLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAF-IHFESMK 405
+ +I+ + E LF +M++ + + T + AC A+ IH + +K
Sbjct: 306 NSLISVLSKKVRVHEMFNLFRKMQEEMIGFSWATLTTILPACSRVAALLTGKEIHAQILK 365
Query: 406 SEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDL 465
S+ P L+ + GKCG + +++ + L + + W + N I+G+I+
Sbjct: 366 SKE--KPDVPLLNSLMDMYGKCGEVEYSRRVFDVMLTKDLAS--WNIMLNCYAINGNIEE 421
Query: 466 EDHAEELMVD 475
+ E M++
Sbjct: 422 VINLFEWMIE 431
Score = 41.6 bits (96), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 65/142 (45%), Gaps = 9/142 (6%)
Query: 256 LCQEGKVKEAIELMDKGVKADAS-----CFYTLFELCGNPKWYENAKKVHDYFLQS-TIR 309
L + K+ EA+ L++ + ++ + L C + K + K+ L + ++R
Sbjct: 105 LSKSTKLDEAVTLIENSSSSPSNLSTPEAYTDLLHACISAKSLHHGIKICSLILNNPSLR 164
Query: 310 GDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDS---WHLMINGYADNGLGDEGLQLF 366
+ L +K+I ++ C + AR++FD + D S+ + W M GY+ NG + L ++
Sbjct: 165 HNPKLLSKLITLFSVCRRLDLARKIFDDVTDSSLLTEKVWAAMAIGYSRNGSPRDALIVY 224
Query: 367 EQMRKLGLQPNEQTFLAVFSAC 388
M ++P + AC
Sbjct: 225 VDMLCSFIEPGNFSISVALKAC 246
>sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065
OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2
Length = 595
Score = 256 bits (653), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 143/423 (33%), Positives = 230/423 (54%), Gaps = 41/423 (9%)
Query: 236 MNQCPAGDQVLPPSVADLARLCQEGKVKEAI----ELMDKGVKADASCFYTLFELCGNPK 291
++ P D V SV + + GK +EA+ E+ KG+K D +L C
Sbjct: 179 FDKMPEKDLVAWNSVIN--GFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIG 236
Query: 292 WYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMIN 351
K+VH Y ++ + +L +N ++++Y +CG + +A+ +FD M D++ SW +I
Sbjct: 237 ALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIV 296
Query: 352 GYADNGLGDEGLQLFEQMRKL-GLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGI 410
G A NG G E ++LF+ M GL P E TF+ + AC ++E F +F M+ E+ I
Sbjct: 297 GLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKI 356
Query: 411 SPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAE 470
P EH+ +V +L + G + +A ++I + +P +P W L +HGD DL + A
Sbjct: 357 EPRIEHFGCMVDLLARAGQVKKAYEYI-KSMPMQPNVVIWRTLLGACTVHGDSDLAEFAR 415
Query: 471 ELMVDLDPSKA-----------------DPKKIPT----PPPKKRTAISILDGKSRLVEF 509
++ L+P+ + D +KI KK S+++ +R+ EF
Sbjct: 416 IQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEF 475
Query: 510 --------RNPTLYRDDEKLKALN-QMKESTYVPDTRYVLHDIDQEAKEQALLYHSERLA 560
++ +Y KLK + +++ YVP V D+++E KE A++YHSE++A
Sbjct: 476 LMGDKSHPQSDAIY---AKLKEMTGRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIA 532
Query: 561 IAYGLISTPARTPLRIIKNLRVCGDCHNAIKIMSRIVGRELIVRDNKRFHHFKDGKCSCG 620
IA+ LISTP R+P+ ++KNLRVC DCH AIK++S++ RE++VRD RFHHFK+G CSC
Sbjct: 533 IAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQ 592
Query: 621 DYW 623
DYW
Sbjct: 593 DYW 595
Score = 76.3 bits (186), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 78/147 (53%), Gaps = 3/147 (2%)
Query: 296 AKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYAD 355
+ +H ++S + + N ++ +Y CG + A +VFD M ++ + +W+ +ING+A+
Sbjct: 140 GETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAE 199
Query: 356 NGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEA-FIHFESMKSEFGISPGT 414
NG +E L L+ +M G++P+ T +++ SAC A+ +H +K G++
Sbjct: 200 NGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIK--VGLTRNL 257
Query: 415 EHYLGLVGVLGKCGHLFEAQQFIEQKL 441
L+ + +CG + EA+ ++ +
Sbjct: 258 HSSNVLLDLYARCGRVEEAKTLFDEMV 284
Score = 35.0 bits (79), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 61/131 (46%), Gaps = 7/131 (5%)
Query: 328 MTDARRVFDHMAD-RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGL-QPNEQTFLAVF 385
M+ A +VF + ++ W+ +I GYA+ G L+ +MR GL +P+ T+ +
Sbjct: 69 MSYAHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLI 128
Query: 386 SACGS-ADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFE 444
A + AD IH ++S FG ++ L+ + CG + A + + K+P E
Sbjct: 129 KAVTTMADVRLGETIHSVVIRSGFGSLIYVQN--SLLHLYANCGDVASAYKVFD-KMP-E 184
Query: 445 PTAEFWEALRN 455
W ++ N
Sbjct: 185 KDLVAWNSVIN 195
>sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520
OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1
Length = 620
Score = 255 bits (651), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 142/393 (36%), Positives = 218/393 (55%), Gaps = 33/393 (8%)
Query: 263 KEAIELM----DKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKV 318
KEA++L + V+ D C E K +H Y ++ IR D VL +
Sbjct: 229 KEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVL 288
Query: 319 IEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNE 378
I+MY KCG M +A VF ++ +S+ +W +I+GYA +G G E + F +M+K+G++PN
Sbjct: 289 IDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNV 348
Query: 379 QTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIE 438
TF AV +AC +EE + F SM+ ++ + P EHY +V +LG+ G L EA++FI
Sbjct: 349 ITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFI- 407
Query: 439 QKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVDLDP---------------SKADP 483
Q++P +P A W AL RIH +I+L + E+++ +DP K
Sbjct: 408 QEMPLKPNAVIWGALLKACRIHKNIELGEEIGEILIAIDPYHGGRYVHKANIHAMDKKWD 467
Query: 484 KKIPTPPPKKRTAISILDGKSRLV------EF-----RNPTLYRDDEKLKAL-NQMKEST 531
K T K ++ + G S + EF +P + + K + + +++E+
Sbjct: 468 KAAETRRLMKEQGVAKVPGCSTISLEGTTHEFLAGDRSHPEIEKIQSKWRIMRRKLEENG 527
Query: 532 YVPDTRYVLHD-IDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRVCGDCHNAI 590
YVP+ +L D +D + +E + HSE+LAI YGLI T T +RI+KNLRVC DCH
Sbjct: 528 YVPELEEMLLDLVDDDEREAIVHQHSEKLAITYGLIKTKPGTIIRIMKNLRVCKDCHKVT 587
Query: 591 KIMSRIVGRELIVRDNKRFHHFKDGKCSCGDYW 623
K++S+I R++++RD RFHHF+DGKCSCGDYW
Sbjct: 588 KLISKIYKRDIVMRDRTRFHHFRDGKCSCGDYW 620
Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 73/149 (48%), Gaps = 9/149 (6%)
Query: 316 NKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQ 375
N VI+ Y K G M A +F MA+++ SW MI+GY + E LQLF +M+ ++
Sbjct: 185 NSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVE 244
Query: 376 PNEQTFLAVFSACGSADAIEEA-FIHFESMKSEFGISPGTEHYLG--LVGVLGKCGHLFE 432
P+ + SAC A+E+ +IH K+ + + LG L+ + KCG + E
Sbjct: 245 PDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRM----DSVLGCVLIDMYAKCGEMEE 300
Query: 433 AQQFIEQKLPFEPTAEFWEALRNYARIHG 461
A + + + + + W AL + HG
Sbjct: 301 ALEVFKN--IKKKSVQAWTALISGYAYHG 327
Score = 34.3 bits (77), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 48/110 (43%), Gaps = 9/110 (8%)
Query: 294 ENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTD------ARRVFDHMADRSMDSWH 347
E K++H L++ + D + + + C S T A+ VFD W+
Sbjct: 28 EELKQIHARMLKTGLMQD---SYAITKFLSFCISSTSSDFLPYAQIVFDGFDRPDTFLWN 84
Query: 348 LMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEA 397
LMI G++ + + L L+++M N TF ++ AC + A EE
Sbjct: 85 LMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEET 134
>sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290
OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1
Length = 809
Score = 253 bits (646), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 135/384 (35%), Positives = 217/384 (56%), Gaps = 29/384 (7%)
Query: 267 ELMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCG 326
++ + VK D + ++ +AK +H ++S + ++ + +++MY KCG
Sbjct: 428 QMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCG 487
Query: 327 SMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFS 386
++ AR +FD M++R + +W+ MI+GY +G G L+LFE+M+K ++PN TFL+V S
Sbjct: 488 AIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVIS 547
Query: 387 ACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPT 446
AC + +E F MK + I +HY +V +LG+ G L EA FI Q +P +P
Sbjct: 548 ACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQ-MPVKPA 606
Query: 447 AEFWEALRNYARIHGDIDLEDHAEELMVDLDPSK-------ADPKKIPTPPPKK-RTAIS 498
+ A+ +IH +++ + A E + +L+P A+ + + K + +S
Sbjct: 607 VNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVS 666
Query: 499 ILDGKSR------LVEFRN--------PTLYRDDEKL-----KALNQMKESTYVPDTRYV 539
+L R +VE +N T + D +K+ K + +KE+ YVPDT V
Sbjct: 667 MLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPDTNLV 726
Query: 540 LHDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRVCGDCHNAIKIMSRIVGR 599
L ++ + KEQ L HSE+LAI++GL++T A T + + KNLRVC DCHNA K +S + GR
Sbjct: 727 L-GVENDVKEQLLSTHSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGR 785
Query: 600 ELIVRDNKRFHHFKDGKCSCGDYW 623
E++VRD +RFHHFK+G CSCGDYW
Sbjct: 786 EIVVRDMQRFHHFKNGACSCGDYW 809
Score = 80.9 bits (198), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 80/163 (49%), Gaps = 3/163 (1%)
Query: 280 FYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMA 339
F L ++CG+ K++H ++S DL + MY KC + +AR+VFD M
Sbjct: 138 FTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMP 197
Query: 340 DRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAF- 398
+R + SW+ ++ GY+ NG+ L++ + M + L+P+ T ++V A + I
Sbjct: 198 ERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKE 257
Query: 399 IHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKL 441
IH +M+S G LV + KCG L A+Q + L
Sbjct: 258 IHGYAMRS--GFDSLVNISTALVDMYAKCGSLETARQLFDGML 298
Score = 77.0 bits (188), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 97/205 (47%), Gaps = 9/205 (4%)
Query: 228 QLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELM----DKGVKADASCFYTL 283
Q+N ++ P D V ++ +A Q G + A+E++ ++ +K ++
Sbjct: 185 QVNEARKVFDRMPERDLVSWNTI--VAGYSQNGMARMALEMVKSMCEENLKPSFITIVSV 242
Query: 284 FELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSM 343
+ K++H Y ++S + ++ +++MY KCGS+ AR++FD M +R++
Sbjct: 243 LPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNV 302
Query: 344 DSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEA-FIHFE 402
SW+ MI+ Y N E + +F++M G++P + + + AC +E FIH
Sbjct: 303 VSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIH-- 360
Query: 403 SMKSEFGISPGTEHYLGLVGVLGKC 427
+ E G+ L+ + KC
Sbjct: 361 KLSVELGLDRNVSVVNSLISMYCKC 385
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 92/204 (45%), Gaps = 9/204 (4%)
Query: 263 KEAI----ELMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKV 318
KEA+ +++D+GVK C + E + +H ++ + ++ + N +
Sbjct: 319 KEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSL 378
Query: 319 IEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNE 378
I MY KC + A +F + R++ SW+ MI G+A NG + L F QMR ++P+
Sbjct: 379 ISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDT 438
Query: 379 QTFLAVFSACGSADAIEEA-FIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFI 437
T+++V +A A +IH M+S + LV + KCG + A+
Sbjct: 439 FTYVSVITAIAELSITHHAKWIHGVVMRS--CLDKNVFVTTALVDMYAKCGAIMIARLIF 496
Query: 438 EQKLPFEPTAEFWEALRNYARIHG 461
+ + E W A+ + HG
Sbjct: 497 D--MMSERHVTTWNAMIDGYGTHG 518
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 3/125 (2%)
Query: 316 NKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQ 375
K++ ++ + GS+ +A RVF+ + + +H M+ G+A D+ LQ F +MR ++
Sbjct: 73 TKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVE 132
Query: 376 PNEQTFLAVFSACG-SADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQ 434
P F + CG A+ IH +KS G S GL + KC + EA+
Sbjct: 133 PVVYNFTYLLKVCGDEAELRVGKEIHGLLVKS--GFSLDLFAMTGLENMYAKCRQVNEAR 190
Query: 435 QFIEQ 439
+ ++
Sbjct: 191 KVFDR 195
>sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g20230
OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2
Length = 760
Score = 251 bits (641), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 134/402 (33%), Positives = 228/402 (56%), Gaps = 32/402 (7%)
Query: 253 LARLCQEGKVKEAIELMDK----GVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTI 308
+A Q GK EA+EL + GVK + ++ CGN + + H + ++ +
Sbjct: 360 IAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHL 419
Query: 309 RGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQ 368
++ + + +I+MY KCG + ++ VF+ M +++ W+ ++NG++ +G E + +FE
Sbjct: 420 LDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFES 479
Query: 369 MRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCG 428
+ + L+P+ +F ++ SACG +E + +F+ M E+GI P EHY +V +LG+ G
Sbjct: 480 LMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAG 539
Query: 429 HLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVDLDP---------- 478
L EA I++ +PFEP + W AL N R+ ++DL + A E + L+P
Sbjct: 540 KLQEAYDLIKE-MPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLLS 598
Query: 479 ---------SKADP--KKIPTPPPKKRTAISILDGKSRLVEF-----RNPTLYRDDEKLK 522
++ D K+ + KK S + K+R+ +P + + EK+
Sbjct: 599 NIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNRVYTLLAGDKSHPQIDQITEKMD 658
Query: 523 ALN-QMKESTYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLR 581
++ +M++S + P+ + LHD++++ +EQ L HSE+LA+ +GL++TP TPL++IKNLR
Sbjct: 659 EISKEMRKSGHRPNLDFALHDVEEQEQEQMLWGHSEKLAVVFGLLNTPDGTPLQVIKNLR 718
Query: 582 VCGDCHNAIKIMSRIVGRELIVRDNKRFHHFKDGKCSCGDYW 623
+CGDCH IK +S GRE+ +RD RFHHFKDG CSCGD+W
Sbjct: 719 ICGDCHAVIKFISSYAGREIFIRDTNRFHHFKDGICSCGDFW 760
Score = 67.0 bits (162), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 70/145 (48%), Gaps = 1/145 (0%)
Query: 268 LMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGS 327
+ G+ D+ LF++C ++ K++H S + D + + MY +CG
Sbjct: 107 MFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGR 166
Query: 328 MTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSA 387
M DAR+VFD M+D+ + + ++ YA G +E +++ +M G++ N ++ + S
Sbjct: 167 MGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSG 226
Query: 388 CGSADAIEEAFIHFESMKSEFGISP 412
+ +EA + F+ + G P
Sbjct: 227 FNRSGYHKEAVVMFQKIH-HLGFCP 250
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/250 (21%), Positives = 98/250 (39%), Gaps = 56/250 (22%)
Query: 258 QEGKVKEAIELMDK----GVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLV 313
+ G KEA+ + K G D ++ G+ + + +H Y ++ + D
Sbjct: 229 RSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKC 288
Query: 314 LNNKVIEMYGKCGSMTDARRVFDH--------------------MADRSMD--------- 344
+ + +I+MYGK G + +F+ + D++++
Sbjct: 289 VISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQT 348
Query: 345 ------SWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAF 398
SW +I G A NG E L+LF +M+ G++PN T ++ ACG+ A+
Sbjct: 349 MELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHG- 407
Query: 399 IHFESMKSEFGISPGTEHYL-------GLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWE 451
+S G + H L L+ + KCG + Q + +P + W
Sbjct: 408 ------RSTHGFAVRV-HLLDNVHVGSALIDMYAKCGRI-NLSQIVFNMMPTKNLV-CWN 458
Query: 452 ALRNYARIHG 461
+L N +HG
Sbjct: 459 SLMNGFSMHG 468
>sp|Q9FIB2|PP373_ARATH Putative pentatricopeptide repeat-containing protein At5g09950
OS=Arabidopsis thaliana GN=PCMP-H35 PE=3 SV=1
Length = 995
Score = 251 bits (641), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 143/387 (36%), Positives = 220/387 (56%), Gaps = 32/387 (8%)
Query: 268 LMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGS 327
++ G + D+ + T+ + E +VH +++ + D+V+ + +++MY KCG
Sbjct: 610 MLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRACLESDVVVGSALVDMYSKCGR 669
Query: 328 MTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQ-PNEQTFLAVFS 386
+ A R F+ M R+ SW+ MI+GYA +G G+E L+LFE M+ G P+ TF+ V S
Sbjct: 670 LDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFETMKLDGQTPPDHVTFVGVLS 729
Query: 387 ACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPT 446
AC A +EE F HFESM +G++P EH+ + VLG+ G L + + FIE K+P +P
Sbjct: 730 ACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADVLGRAGELDKLEDFIE-KMPMKPN 788
Query: 447 AEFWE-ALRNYARIHG-DIDLEDHAEELMVDLDPSKA---------------------DP 483
W L R +G +L A E++ L+P A
Sbjct: 789 VLIWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAVNYVLLGNMYAAGGRWEDLVKAR 848
Query: 484 KKIPTPPPKKRTA---ISILDGKSRLV--EFRNPTLYRDDEKLKALN-QMKESTYVPDTR 537
KK+ KK +++ DG V + +P +KLK LN +M+++ YVP T
Sbjct: 849 KKMKDADVKKEAGYSWVTMKDGVHMFVAGDKSHPDADVIYKKLKELNRKMRDAGYVPQTG 908
Query: 538 YVLHDIDQEAKEQALLYHSERLAIAYGLISTPART-PLRIIKNLRVCGDCHNAIKIMSRI 596
+ L+D++QE KE+ L YHSE+LA+A+ L + + T P+RI+KNLRVCGDCH+A K +S+I
Sbjct: 909 FALYDLEQENKEEILSYHSEKLAVAFVLAAQRSSTLPIRIMKNLRVCGDCHSAFKYISKI 968
Query: 597 VGRELIVRDNKRFHHFKDGKCSCGDYW 623
GR++I+RD+ RFHHF+DG CSC D+W
Sbjct: 969 EGRQIILRDSNRFHHFQDGACSCSDFW 995
Score = 73.2 bits (178), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 80/159 (50%), Gaps = 8/159 (5%)
Query: 281 YTLFELCGNPKWYENAKKVHDYFLQSTIRGDLV-LNNKVIEMYGKCGSMTDARRVFDHMA 339
Y+L E G K ++VH + + + + +V + N ++ MY KCGS+ DARRVF M
Sbjct: 321 YSLAEEVGLKK----GREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFYFMT 376
Query: 340 DRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEA-F 398
D+ SW+ MI G NG E ++ ++ MR+ + P T ++ S+C S +
Sbjct: 377 DKDSVSWNSMITGLDQNGCFIEAVERYKSMRRHDILPGSFTLISSLSSCASLKWAKLGQQ 436
Query: 399 IHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFI 437
IH ES+K GI L+ + + G+L E ++
Sbjct: 437 IHGESLK--LGIDLNVSVSNALMTLYAETGYLNECRKIF 473
Score = 69.3 bits (168), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 96/215 (44%), Gaps = 20/215 (9%)
Query: 294 ENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMD-SWHLMING 352
E K++H L++ I + N +I YGKCG M ++F MA+R + +W+ MI+G
Sbjct: 534 ELGKQIHGLALKNNIADEATTENALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMISG 593
Query: 353 YADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAF-IHFESMKS--EFG 409
Y N L + L L M + G + + + V SA S +E +H S+++ E
Sbjct: 594 YIHNELLAKALDLVWFMLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRACLESD 653
Query: 410 ISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHA 469
+ G+ LV + KCG L A +F +P + + + YAR HG
Sbjct: 654 VVVGS----ALVDMYSKCGRLDYALRFF-NTMPVRNSYSWNSMISGYAR-HG------QG 701
Query: 470 EELMVDLDPSKADPKKIPTPPPKKRTAISILDGKS 504
EE + + K D + PP T + +L S
Sbjct: 702 EEALKLFETMKLDGQ----TPPDHVTFVGVLSACS 732
Score = 60.1 bits (144), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 62/135 (45%), Gaps = 5/135 (3%)
Query: 296 AKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYAD 355
A+ H ++ + D+ L N +I Y + G AR+VFD M R+ SW +++GY+
Sbjct: 20 ARFFHSRLYKNRLDKDVYLCNNLINAYLETGDSVSARKVFDEMPLRNCVSWACIVSGYSR 79
Query: 356 NGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAF---IHFESMKSEFGISP 412
NG E L M K G+ N+ F++V AC ++ F IH K + +
Sbjct: 80 NGEHKEALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSVGILFGRQIHGLMFKLSYAVDA 139
Query: 413 GTEHYLGLVGVLGKC 427
+ L+ + KC
Sbjct: 140 VVSNV--LISMYWKC 152
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 68/137 (49%), Gaps = 8/137 (5%)
Query: 260 GKVKEAI----ELMDKGVKADASCFYTLFELCG--NPKWYENAKKVHDYFLQSTIRGDLV 313
G+ KEA+ +++ +G+ ++ F ++ C +++H + + D V
Sbjct: 81 GEHKEALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSVGILFGRQIHGLMFKLSYAVDAV 140
Query: 314 LNNKVIEMYGKC-GSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKL 372
++N +I MY KC GS+ A F + ++ SW+ +I+ Y+ G ++F M+
Sbjct: 141 VSNVLISMYWKCIGSVGYALCAFGDIEVKNSVSWNSIISVYSQAGDQRSAFRIFSSMQYD 200
Query: 373 GLQPNEQTFLA-VFSAC 388
G +P E TF + V +AC
Sbjct: 201 GSRPTEYTFGSLVTTAC 217
Score = 42.4 bits (98), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 66/136 (48%), Gaps = 6/136 (4%)
Query: 305 QSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQ 364
+S + DL + + ++ + K GS++ AR+VF+ M R+ + + ++ G G+E +
Sbjct: 236 KSGLLTDLFVGSGLVSAFAKSGSLSYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEATK 295
Query: 365 LFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYL-----G 419
LF M + + + ++++ + S+ EE + I+ G ++ G
Sbjct: 296 LFMDMNSM-IDVSPESYVILLSSFPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNG 354
Query: 420 LVGVLGKCGHLFEAQQ 435
LV + KCG + +A++
Sbjct: 355 LVNMYAKCGSIADARR 370
Score = 42.0 bits (97), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 70/146 (47%), Gaps = 4/146 (2%)
Query: 287 CGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSW 346
C + KW + +++H L+ I ++ ++N ++ +Y + G + + R++F M + SW
Sbjct: 425 CASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSW 484
Query: 347 HLMINGYADNGLGD-EGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAF-IHFESM 404
+ +I A + E + F ++ G + N TF +V SA S E IH ++
Sbjct: 485 NSIIGALARSERSLPEAVVCFLNAQRAGQKLNRITFSSVLSAVSSLSFGELGKQIHGLAL 544
Query: 405 KSEFGISPGTEHYLGLVGVLGKCGHL 430
K+ TE+ L+ GKCG +
Sbjct: 545 KNNIADEATTEN--ALIACYGKCGEM 568
>sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770
OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1
Length = 694
Score = 251 bits (640), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 137/397 (34%), Positives = 219/397 (55%), Gaps = 33/397 (8%)
Query: 258 QEGKVKEAI----ELMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLV 313
+ G +EAI E+++K V+ D + C E A+ +++Y +S R D+
Sbjct: 300 KNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVF 359
Query: 314 LNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLG 373
+++ +I+M+ KCGS+ AR VFD DR + W MI GY +G E + L+ M + G
Sbjct: 360 ISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGG 419
Query: 374 LQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEA 433
+ PN+ TFL + AC + + E + F M ++ I+P +HY ++ +LG+ GHL +A
Sbjct: 420 VHPNDVTFLGLLMACNHSGMVREGWWFFNRM-ADHKINPQQQHYACVIDLLGRAGHLDQA 478
Query: 434 QQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSK------------- 480
+ I + +P +P W AL + + H ++L ++A + + +DPS
Sbjct: 479 YEVI-KCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAA 537
Query: 481 -------ADPK-KIPTPPPKKRTAISILDGKSRLVEFR-----NPTLYRDDEKLKAL-NQ 526
A+ + ++ K S ++ + RL FR +P + +++ + ++
Sbjct: 538 ARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSHPRYEEIERQVEWIESR 597
Query: 527 MKESTYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRVCGDC 586
+KE +V + LHD++ E E+ L HSER+AIAYGLISTP TPLRI KNLR C +C
Sbjct: 598 LKEGGFVANKDASLHDLNDEEAEETLCSHSERIAIAYGLISTPQGTPLRITKNLRACVNC 657
Query: 587 HNAIKIMSRIVGRELIVRDNKRFHHFKDGKCSCGDYW 623
H A K++S++V RE++VRD RFHHFKDG CSCGDYW
Sbjct: 658 HAATKLISKLVDREIVVRDTNRFHHFKDGVCSCGDYW 694
Score = 72.8 bits (177), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 67/305 (21%), Positives = 127/305 (41%), Gaps = 30/305 (9%)
Query: 273 VKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDAR 332
V D+ F L + C + + VH + D+ + N +I +Y KC + AR
Sbjct: 115 VSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSAR 174
Query: 333 RVFDH--MADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGS 390
VF+ + +R++ SW +++ YA NG E L++F QMRK+ ++P+ ++V +A
Sbjct: 175 TVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTC 234
Query: 391 ADAIEEA-FIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEF 449
+++ IH +K I P + + L + KCG + A+ ++ P
Sbjct: 235 LQDLKQGRSIHASVVKMGLEIEP--DLLISLNTMYAKCGQVATAKILFDKMK--SPNLIL 290
Query: 450 WEAL------RNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTA-ISILDG 502
W A+ YAR A ++ ++ P I A + L+
Sbjct: 291 WNAMISGYAKNGYAR---------EAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQ 341
Query: 503 KSRLVEFRNPTLYRDDEKLKA--LNQMKESTYVPDTRYVLHDIDQEAKEQALLYHSERLA 560
+ E+ + YRDD + + ++ + V R V D+ +++ + +
Sbjct: 342 ARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVF---DRTLDRDVVVWSA--MI 396
Query: 561 IAYGL 565
+ YGL
Sbjct: 397 VGYGL 401
Score = 67.4 bits (163), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 100/229 (43%), Gaps = 13/229 (5%)
Query: 240 PAGDQVLPPSVADLARLCQEGKVKEAIELMDK----GVKADASCFYTLFELCGNPKWYEN 295
P ++ + A ++ Q G+ EA+E+ + VK D ++ + +
Sbjct: 181 PLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQ 240
Query: 296 AKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYAD 355
+ +H ++ + + L + MY KCG + A+ +FD M ++ W+ MI+GYA
Sbjct: 241 GRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAK 300
Query: 356 NGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTE 415
NG E + +F +M ++P+ + + SAC ++E+A SM G S +
Sbjct: 301 NGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQA----RSMYEYVGRSDYRD 356
Query: 416 HYL---GLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHG 461
L+ + KCG + A+ ++ L + W A+ +HG
Sbjct: 357 DVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVV--WSAMIVGYGLHG 403
Score = 53.1 bits (126), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 71/159 (44%), Gaps = 5/159 (3%)
Query: 297 KKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADN 356
K++H L ++ L K+I G +T AR+VFD + + W+ +I GY+ N
Sbjct: 38 KQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRN 97
Query: 357 GLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEA-FIHFESMKSEFGISPGTE 415
+ L ++ M+ + P+ TF + AC ++ F+H + + F +
Sbjct: 98 NHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQ 157
Query: 416 HYLGLVGVLGKCGHLFEAQQFIEQKLPF-EPTAEFWEAL 453
+ GL+ + KC L A+ E LP E T W A+
Sbjct: 158 N--GLIALYAKCRRLGSARTVFE-GLPLPERTIVSWTAI 193
>sp|Q9FXB9|PPR84_ARATH Pentatricopeptide repeat-containing protein At1g56690,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H69 PE=2
SV=1
Length = 704
Score = 250 bits (638), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 130/392 (33%), Positives = 213/392 (54%), Gaps = 33/392 (8%)
Query: 264 EAIELM----DKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVI 319
EA++L +GV+ ++ +C + ++VH + ++ D+ + + ++
Sbjct: 314 EALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFDDDVYVASVLM 373
Query: 320 EMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQ 379
MY KCG + A+ VFD + + + W+ +I+GYA +GLG+E L++F +M G PN+
Sbjct: 374 TMYVKCGELVKAKLVFDRFSSKDIIMWNSIISGYASHGLGEEALKIFHEMPSSGTMPNKV 433
Query: 380 TFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQ 439
T +A+ +AC A +EE FESM+S+F ++P EHY V +LG+ G + +A + IE
Sbjct: 434 TLIAILTACSYAGKLEEGLEIFESMESKFCVTPTVEHYSCTVDMLGRAGQVDKAMELIES 493
Query: 440 KLPFEPTAEFWEALRNYARIHGDIDLEDHAEE--------------LMVDLDPSKADPKK 485
+ +P A W AL + H +DL + A + L+ ++ S++
Sbjct: 494 -MTIKPDATVWGALLGACKTHSRLDLAEVAAKKLFENEPDNAGTYVLLSSINASRSKWGD 552
Query: 486 IPTPPPKKRT-------AISILDGKSRLVEFRNPTLYRDDEKLKALNQM-------KEST 531
+ RT S ++ ++ F + E+ L + +E+
Sbjct: 553 VAVVRKNMRTNNVSKFPGCSWIEVGKKVHMFTRGGIKNHPEQAMILMMLEKTDGLLREAG 612
Query: 532 YVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRVCGDCHNAIK 591
Y PD +VLHD+D+E K +L HSERLA+AYGL+ P P+R++KNLRVCGDCH AIK
Sbjct: 613 YSPDCSHVLHDVDEEEKVDSLSRHSERLAVAYGLLKLPEGVPIRVMKNLRVCGDCHAAIK 672
Query: 592 IMSRIVGRELIVRDNKRFHHFKDGKCSCGDYW 623
++S++ RE+I+RD RFHHF +G+CSC DYW
Sbjct: 673 LISKVTEREIILRDANRFHHFNNGECSCRDYW 704
Score = 68.9 bits (167), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 101/231 (43%), Gaps = 32/231 (13%)
Query: 237 NQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDKGVKADASCFYT-------------- 282
+ P D V S + LC+EG+V EA + D+ + + + T
Sbjct: 165 DMMPVKDVV--ASTNMIGGLCREGRVDEARLIFDEMRERNVVTWTTMITGYRQNNRVDVA 222
Query: 283 --LFELC---GNPKW------YENAKKVHDY--FLQSTIRGDLVLNNKVIEMYGKCGSMT 329
LFE+ W Y + ++ D F + ++ N +I +G+ G ++
Sbjct: 223 RKLFEVMPEKTEVSWTSMLLGYTLSGRIEDAEEFFEVMPMKPVIACNAMIVGFGEVGEIS 282
Query: 330 DARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACG 389
ARRVFD M DR +W MI Y G E L LF QM+K G++P+ + +++ S C
Sbjct: 283 KARRVFDLMEDRDNATWRGMIKAYERKGFELEALDLFAQMQKQGVRPSFPSLISILSVCA 342
Query: 390 SADAIEEAF-IHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQ 439
+ +++ +H ++ +F L + V KCG L +A+ ++
Sbjct: 343 TLASLQYGRQVHAHLVRCQFDDDVYVASVLMTMYV--KCGELVKAKLVFDR 391
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 68/147 (46%), Gaps = 8/147 (5%)
Query: 258 QEGKVKEAIELMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNK 317
QEG V EA L + + + + +F + + A+K++D D+V +
Sbjct: 122 QEGMVGEAESLFWRMPERNEVSWTVMFGGLIDDGRIDKARKLYDMMPVK----DVVASTN 177
Query: 318 VIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPN 377
+I + G + +AR +FD M +R++ +W MI GY N D +LFE M +
Sbjct: 178 MIGGLCREGRVDEARLIFDEMRERNVVTWTTMITGYRQNNRVDVARKLFEVMP----EKT 233
Query: 378 EQTFLAVFSACGSADAIEEAFIHFESM 404
E ++ ++ + IE+A FE M
Sbjct: 234 EVSWTSMLLGYTLSGRIEDAEEFFEVM 260
Score = 43.5 bits (101), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 32/51 (62%)
Query: 319 IEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQM 369
I + G + +AR+ FD + +++ SW+ +++GY NGL E QLF++M
Sbjct: 24 ISRLSRIGKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQLFDEM 74
Score = 42.0 bits (97), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 70/150 (46%), Gaps = 16/150 (10%)
Query: 252 DLARLCQEGKVKEAIELMD----KGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQST 307
+++RL + GK+ EA + D K + + S F G PK A+++ D +
Sbjct: 23 EISRLSRIGKINEARKFFDSLQFKAIGSWNSIVSGYFS-NGLPK---EARQLFDEMSERN 78
Query: 308 IRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFE 367
+ V N ++ Y K + +AR VF+ M +R++ SW M+ GY G+ E LF
Sbjct: 79 V----VSWNGLVSGYIKNRMIVEARNVFELMPERNVVSWTAMVKGYMQEGMVGEAESLFW 134
Query: 368 QMRKLGLQPNEQTFLAVFSACGSADAIEEA 397
+M + NE ++ +F I++A
Sbjct: 135 RMP----ERNEVSWTVMFGGLIDDGRIDKA 160
>sp|Q56XI1|PPR25_ARATH Pentatricopeptide repeat-containing protein At1g09410
OS=Arabidopsis thaliana GN=PCMP-H18 PE=2 SV=2
Length = 705
Score = 249 bits (637), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 130/387 (33%), Positives = 213/387 (55%), Gaps = 30/387 (7%)
Query: 266 IELMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKC 325
I + +GV+ ++ +C + + K+VH ++ D+ + + ++ MY KC
Sbjct: 320 ILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYIKC 379
Query: 326 GSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLG-LQPNEQTFLAV 384
G + ++ +FD + + W+ +I+GYA +GLG+E L++F +M G +PNE TF+A
Sbjct: 380 GELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVAT 439
Query: 385 FSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFE 444
SAC A +EE +ESM+S FG+ P T HY +V +LG+ G EA + I+ + E
Sbjct: 440 LSACSYAGMVEEGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMIDS-MTVE 498
Query: 445 PTAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADP--------------------- 483
P A W +L R H +D+ + + +++++P +
Sbjct: 499 PDAAVWGSLLGACRTHSQLDVAEFCAKKLIEIEPENSGTYILLSNMYASQGRWADVAELR 558
Query: 484 KKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEK---LKALNQM----KESTYVPDT 536
K + T +K S + ++++ F + E+ LK L+++ +E+ Y PD
Sbjct: 559 KLMKTRLVRKSPGCSWTEVENKVHAFTRGGINSHPEQESILKILDELDGLLREAGYNPDC 618
Query: 537 RYVLHDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRVCGDCHNAIKIMSRI 596
Y LHD+D+E K +L YHSERLA+AY L+ P+R++KNLRVC DCH AIKI+S++
Sbjct: 619 SYALHDVDEEEKVNSLKYHSERLAVAYALLKLSEGIPIRVMKNLRVCSDCHTAIKIISKV 678
Query: 597 VGRELIVRDNKRFHHFKDGKCSCGDYW 623
RE+I+RD RFHHF++G+CSC DYW
Sbjct: 679 KEREIILRDANRFHHFRNGECSCKDYW 705
Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 102/234 (43%), Gaps = 32/234 (13%)
Query: 256 LCQEGKVKEAIELMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYF-------LQSTI 308
LC+EG+V EA E+ D+ + + T+ G ++A+K+ D S +
Sbjct: 182 LCKEGRVDEAREIFDEMSERSVITWTTMVTGYGQNNRVDDARKIFDVMPEKTEVSWTSML 241
Query: 309 RG--------------------DLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHL 348
G ++ N +I G+ G + ARRVFD M +R+ SW
Sbjct: 242 MGYVQNGRIEDAEELFEVMPVKPVIACNAMISGLGQKGEIAKARRVFDSMKERNDASWQT 301
Query: 349 MINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAF-IHFESMKSE 407
+I + NG E L LF M+K G++P T +++ S C S ++ +H + ++ +
Sbjct: 302 VIKIHERNGFELEALDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQ 361
Query: 408 FGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHG 461
F + L + + KCG L ++ + I + P + + + YA HG
Sbjct: 362 FDVDVYVASVLMTMYI--KCGELVKS-KLIFDRFPSKDIIMWNSIISGYAS-HG 411
Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 6/126 (4%)
Query: 246 LPPSVAD--LARLCQEGKVKEAIELMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYF 303
+PP A+ + L + GK+ EA +L D S + ++ +A+K+ D
Sbjct: 15 IPPPTANVRITHLSRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEM 74
Query: 304 LQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGL 363
I + N ++ Y K G + +AR+VFD M +R++ SW ++ GY NG D
Sbjct: 75 PDRNI----ISWNGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAE 130
Query: 364 QLFEQM 369
LF +M
Sbjct: 131 SLFWKM 136
Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 321 MYGKC--GSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQM 369
++G C G + +AR +FD M++RS+ +W M+ GY N D+ ++F+ M
Sbjct: 179 IHGLCKEGRVDEAREIFDEMSERSVITWTTMVTGYGQNNRVDDARKIFDVM 229
>sp|Q0WSH6|PP312_ARATH Pentatricopeptide repeat-containing protein At4g14850
OS=Arabidopsis thaliana GN=LOI1 PE=1 SV=1
Length = 684
Score = 248 bits (634), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 133/371 (35%), Positives = 208/371 (56%), Gaps = 30/371 (8%)
Query: 282 TLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADR 341
++ C E + +H + +++ + + + + +++MYGKCG + D+ + FD M ++
Sbjct: 315 SVLSACAGMAGLELGRSIHAHAVKACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMPEK 374
Query: 342 SMDSWHLMINGYADNGLGDEGLQLFEQM--RKLGLQPNEQTFLAVFSACGSADAIEEAFI 399
++ + + +I GYA G D L LFE+M R G PN TF+++ SAC A A+E
Sbjct: 375 NLVTRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTPNYMTFVSLLSACSRAGAVENGMK 434
Query: 400 HFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARI 459
F+SM+S +GI PG EHY +V +LG+ G + A +FI +K+P +PT W AL+N R+
Sbjct: 435 IFDSMRSTYGIEPGAEHYSCIVDMLGRAGMVERAYEFI-KKMPIQPTISVWGALQNACRM 493
Query: 460 HGDIDLEDHAEELMVDLDPSKAD---------------------PKKIPTPPPKKRTAIS 498
HG L A E + LDP + +++ KK S
Sbjct: 494 HGKPQLGLLAAENLFKLDPKDSGNHVLLSNTFAAAGRWAEANTVREELKGVGIKKGAGYS 553
Query: 499 ILDGKSRLVEF----RNPTLYRDDEKL--KALNQMKESTYVPDTRYVLHDIDQEAKEQAL 552
+ K+++ F R+ L ++ + K N+M+ + Y PD + L+D+++E K +
Sbjct: 554 WITVKNQVHAFQAKDRSHILNKEIQTTLAKLRNEMEAAGYKPDLKLSLYDLEEEEKAAEV 613
Query: 553 LYHSERLAIAYGLISTPARTPLRIIKNLRVCGDCHNAIKIMSRIVGRELIVRDNKRFHHF 612
+HSE+LA+A+GL+S P P+RI KNLR+CGDCH+ K +S V RE+IVRDN RFH F
Sbjct: 614 SHHSEKLALAFGLLSLPLSVPIRITKNLRICGDCHSFFKFVSGSVKREIIVRDNNRFHRF 673
Query: 613 KDGKCSCGDYW 623
KDG CSC DYW
Sbjct: 674 KDGICSCKDYW 684
Score = 60.8 bits (146), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 111/254 (43%), Gaps = 22/254 (8%)
Query: 259 EGKVKEAIELMDKGVKAD----ASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVL 314
+G+ +EAIE + + D + F C + ++H L+S D+ +
Sbjct: 187 DGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQLHGLVLRSGFDTDVSV 246
Query: 315 NNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGL 374
N +I+ YGKC + + +F M ++ SW ++ Y N ++ L+ + RK +
Sbjct: 247 CNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKDIV 306
Query: 375 QPNEQTFLAVFSACGSADAIEEA-FIHFESMKS--EFGISPGTEHYLGLVGVLGKCGHLF 431
+ ++ +V SAC +E IH ++K+ E I G+ LV + GKCG +
Sbjct: 307 ETSDFMISSVLSACAGMAGLELGRSIHAHAVKACVERTIFVGS----ALVDMYGKCGCIE 362
Query: 432 EAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPP 491
+++Q ++ +P + + YA G +D+ A L ++ P P P
Sbjct: 363 DSEQAFDE-MPEKNLVTRNSLIGGYAH-QGQVDM---ALALFEEMAPRGCG------PTP 411
Query: 492 KKRTAISILDGKSR 505
T +S+L SR
Sbjct: 412 NYMTFVSLLSACSR 425
Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/200 (21%), Positives = 88/200 (44%), Gaps = 4/200 (2%)
Query: 264 EAIELMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYG 323
E E+ +GV + F F+ + + K++H ++ D+ + +MY
Sbjct: 95 EFFEMRREGVVPNDFTFPCAFKAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYC 154
Query: 324 KCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLA 383
K DAR++FD + +R++++W+ I+ +G E ++ F + R++ PN TF A
Sbjct: 155 KTRLRDDARKLFDEIPERNLETWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCA 214
Query: 384 VFSACGSADAIEEAF-IHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLP 442
+AC + +H ++S F + GL+ GKC + + + I ++
Sbjct: 215 FLNACSDWLHLNLGMQLHGLVLRSGFDTDVSVCN--GLIDFYGKCKQI-RSSEIIFTEMG 271
Query: 443 FEPTAEFWEALRNYARIHGD 462
+ + + Y + H D
Sbjct: 272 TKNAVSWCSLVAAYVQNHED 291
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 38/77 (49%)
Query: 314 LNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLG 373
L N +I MY K AR V R++ SW +I+G A NG L F +MR+ G
Sbjct: 44 LANYLINMYSKLDHPESARLVLRLTPARNVVSWTSLISGLAQNGHFSTALVEFFEMRREG 103
Query: 374 LQPNEQTFLAVFSACGS 390
+ PN+ TF F A S
Sbjct: 104 VVPNDFTFPCAFKAVAS 120
>sp|Q9LW32|PP258_ARATH Pentatricopeptide repeat-containing protein At3g26782,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2
SV=1
Length = 659
Score = 248 bits (634), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 141/402 (35%), Positives = 214/402 (53%), Gaps = 41/402 (10%)
Query: 258 QEGKVKEAIELMDKGVKADASCF-----YTLFELCGNPKWYENAKKVHDYFLQSTIRGDL 312
Q G EA E+ + VK F T+ + K +HD ++ + D+
Sbjct: 263 QSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDV 322
Query: 313 VLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKL 372
++ +I+MY KCG + AR+ FD M ++++ SW MI GY +G + L+LF M
Sbjct: 323 IVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDS 382
Query: 373 GLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFE 432
G++PN TF++V +AC A E + F +MK FG+ PG EHY +V +LG+ G L +
Sbjct: 383 GVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQK 442
Query: 433 AQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKA----------- 481
A I Q++ +P + W +L RIH +++L + + + +LD S
Sbjct: 443 AYDLI-QRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYA 501
Query: 482 ------DPKKI--------PTPPPKKRTAISILDGKSRLVEF-----RNPTLYRDDEKLK 522
D +++ PP S+L+ + F +P + E L
Sbjct: 502 DAGRWKDVERVRMIMKNRGLVKPP----GFSLLELNGEVHVFLIGDEEHPQREKIYEFLA 557
Query: 523 ALN-QMKESTYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLR 581
LN ++ E+ YV +T V HD+D+E KE L HSE+LAIA+G+++T + + ++KNLR
Sbjct: 558 ELNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLR 617
Query: 582 VCGDCHNAIKIMSRIVGRELIVRDNKRFHHFKDGKCSCGDYW 623
VC DCHN IK++S+IV RE +VRD KRFHHFKDG CSCGDYW
Sbjct: 618 VCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGGCSCGDYW 659
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 80/175 (45%), Gaps = 12/175 (6%)
Query: 250 VADLARLCQEGKVKEAIELMDK-GVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTI 308
+ADLAR + A M K + S F + C + + K+ H
Sbjct: 48 IADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIFSGKQTHQQAFVFGY 107
Query: 309 RGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQ 368
+ D+ +++ +I MY CG + DAR+VFD + R++ SW MI GY NG + + LF+
Sbjct: 108 QSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKD 167
Query: 369 MRKLGLQPNEQTFL------AVFSACGS--ADAIEEAFIHFESMKSEF--GISPG 413
+ ++ FL +V SAC A + E+ IH +K F G+S G
Sbjct: 168 LLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTES-IHSFVIKRGFDRGVSVG 221
Score = 40.8 bits (94), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 63/150 (42%), Gaps = 17/150 (11%)
Query: 334 VFDHMADRS-MDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSAD 392
+F+ D++ + SW+ +I A +G E L F MRKL L P +F AC S
Sbjct: 31 LFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLF 90
Query: 393 AI-------EEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEP 445
I ++AF+ FG L+ + CG L +A++ ++ +P
Sbjct: 91 DIFSGKQTHQQAFV--------FGYQSDIFVSSALIVMYSTCGKLEDARKVFDE-IPKRN 141
Query: 446 TAEFWEALRNYARIHGDIDLEDHAEELMVD 475
+ +R Y +D ++L+VD
Sbjct: 142 IVSWTSMIRGYDLNGNALDAVSLFKDLLVD 171
Score = 40.4 bits (93), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 20/104 (19%), Positives = 51/104 (49%), Gaps = 2/104 (1%)
Query: 270 DKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCG--S 327
D + D+ ++ C + +H + ++ + + N +++ Y K G
Sbjct: 176 DDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGG 235
Query: 328 MTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRK 371
+ AR++FD + D+ S++ +++ YA +G+ +E ++F ++ K
Sbjct: 236 VAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVK 279
>sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g33990
OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2
Length = 823
Score = 248 bits (633), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 137/403 (33%), Positives = 217/403 (53%), Gaps = 43/403 (10%)
Query: 258 QEGKVKEAIELM-----DKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDL 312
Q G EAIE+ + + A+ + ++ C K+H L++ + D+
Sbjct: 427 QNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDV 486
Query: 313 VLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKL 372
+ + +MYGKCG + DA +F + + W+ +I + +G G++ + LF++M
Sbjct: 487 FVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDE 546
Query: 373 GLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFE 432
G++P+ TF+ + SAC + ++E FE M++++GI+P +HY +V + G+ G L
Sbjct: 547 GVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLET 606
Query: 433 AQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVDLDP-------------- 478
A +FI + + +P A W AL + R+HG++DL A E + +++P
Sbjct: 607 ALKFI-KSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYA 665
Query: 479 ------------SKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPT------LYRDDEK 520
S A K + P + D K + N T +YR+
Sbjct: 666 SAGKWEGVDEIRSIAHGKGLRKTPGWSSMEV---DNKVEVFYTGNQTHPMYEEMYRELTA 722
Query: 521 LKALNQMKESTYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNL 580
L+A ++K YVPD R+VL D++ + KE L+ HSERLAIA+ LI+TPA+T +RI KNL
Sbjct: 723 LQA--KLKMIGYVPDHRFVLQDVEDDEKEHILMSHSERLAIAFALIATPAKTTIRIFKNL 780
Query: 581 RVCGDCHNAIKIMSRIVGRELIVRDNKRFHHFKDGKCSCGDYW 623
RVCGDCH+ K +S+I RE+IVRD+ RFHHFK+G CSCGDYW
Sbjct: 781 RVCGDCHSVTKFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 823
Score = 72.8 bits (177), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 70/136 (51%)
Query: 251 ADLARLCQEGKVKEAIELMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRG 310
A ++ CQ G KEA+ L + D+ +L C + +H Y ++ +
Sbjct: 221 AMISGYCQSGNAKEALTLSNGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLES 280
Query: 311 DLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMR 370
+L ++NK+I++Y + G + D ++VFD M R + SW+ +I Y N + LF++MR
Sbjct: 281 ELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMR 340
Query: 371 KLGLQPNEQTFLAVFS 386
+QP+ T +++ S
Sbjct: 341 LSRIQPDCLTLISLAS 356
Score = 70.1 bits (170), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 69/131 (52%), Gaps = 4/131 (3%)
Query: 311 DLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMR 370
D+ + N V+ MY K G + AR VF+ + + + SW+ +I+GYA NG E ++++ M
Sbjct: 383 DITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIME 442
Query: 371 KLG-LQPNEQTFLAVFSACGSADAIEEAF-IHFESMKSEFGISPGTEHYLGLVGVLGKCG 428
+ G + N+ T+++V AC A A+ + +H +K+ G+ L + GKCG
Sbjct: 443 EEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKN--GLYLDVFVVTSLADMYGKCG 500
Query: 429 HLFEAQQFIEQ 439
L +A Q
Sbjct: 501 RLEDALSLFYQ 511
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 70/129 (54%), Gaps = 6/129 (4%)
Query: 281 YTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD 340
+TLF C N ++AK +H + S ++ ++ K++ +Y G++ AR FDH+ +
Sbjct: 58 HTLFRYCTN---LQSAKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQN 114
Query: 341 RSMDSWHLMINGYADNGLGDEGLQLFEQ-MRKLGLQPNEQTFLAVFSACGSADAIEEAFI 399
R + +W+LMI+GY G E ++ F M GL P+ +TF +V AC + I+ I
Sbjct: 115 RDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRT--VIDGNKI 172
Query: 400 HFESMKSEF 408
H ++K F
Sbjct: 173 HCLALKFGF 181
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 79/173 (45%), Gaps = 12/173 (6%)
Query: 265 AIELMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGK 324
++ ++ G+ D F ++ + C + + K+H L+ D+ + +I +Y +
Sbjct: 141 SLFMLSSGLTPDYRTFPSVLKAC---RTVIDGNKIHCLALKFGFMWDVYVAASLIHLYSR 197
Query: 325 CGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAV 384
++ +AR +FD M R M SW+ MI+GY +G E L L +R + + T +++
Sbjct: 198 YKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLRAM----DSVTVVSL 253
Query: 385 FSACGSA-DAIEEAFIHFESMK----SEFGISPGTEHYLGLVGVLGKCGHLFE 432
SAC A D IH S+K SE +S G L C +F+
Sbjct: 254 LSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFD 306
>sp|Q9CAA8|PP108_ARATH Putative pentatricopeptide repeat-containing protein At1g68930
OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1
Length = 743
Score = 247 bits (631), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 141/397 (35%), Positives = 212/397 (53%), Gaps = 32/397 (8%)
Query: 258 QEGKVKEAIELM----DKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLV 313
Q G+ +EA+++ G+ D C N E + H + S + +
Sbjct: 348 QTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVT 407
Query: 314 LNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLG 373
++N ++ +YGKCG + D+ R+F+ M R SW M++ YA G E +QLF++M + G
Sbjct: 408 VSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHG 467
Query: 374 LQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEA 433
L+P+ T V SAC A +E+ +F+ M SE+GI P HY ++ + + G L EA
Sbjct: 468 LKPDGVTLTGVISACSRAGLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEA 527
Query: 434 QQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVDLDP--------------- 478
+FI +PF P A W L + R G++++ A E +++LDP
Sbjct: 528 MRFI-NGMPFPPDAIGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYAS 586
Query: 479 -SKADP-----KKIPTPPPKKRTAISILDGKSRLVEFR-----NPTLYRDDEKLKALN-Q 526
K D + + KK S + K +L F +P L + KL+ LN +
Sbjct: 587 KGKWDSVAQLRRGMREKNVKKEPGQSWIKWKGKLHSFSADDESSPYLDQIYAKLEELNNK 646
Query: 527 MKESTYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRVCGDC 586
+ ++ Y PDT +V HD+++ K + L YHSERLAIA+GLI P+ P+R+ KNLRVC DC
Sbjct: 647 IIDNGYKPDTSFVHHDVEEAVKVKMLNYHSERLAIAFGLIFVPSGQPIRVGKNLRVCVDC 706
Query: 587 HNAIKIMSRIVGRELIVRDNKRFHHFKDGKCSCGDYW 623
HNA K +S + GRE++VRD RFH FKDG CSCGD+W
Sbjct: 707 HNATKHISSVTGREILVRDAVRFHRFKDGTCSCGDFW 743
Score = 92.8 bits (229), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 99/200 (49%), Gaps = 19/200 (9%)
Query: 251 ADLARLCQEGKVKEAIE----LMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQS 306
A + L Q G KEAIE + +G+K D F ++ CG K++H +++
Sbjct: 240 AMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRT 299
Query: 307 TIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLF 366
+ + + + +I+MY KC + A+ VFD M +++ SW M+ GY G +E +++F
Sbjct: 300 NFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIF 359
Query: 367 EQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEF---GISPGTEHYL----G 419
M++ G+ P+ T SAC + ++EE S+F I+ G HY+
Sbjct: 360 LDMQRSGIDPDHYTLGQAISACANVSSLEEG--------SQFHGKAITSGLIHYVTVSNS 411
Query: 420 LVGVLGKCGHLFEAQQFIEQ 439
LV + GKCG + ++ + +
Sbjct: 412 LVTLYGKCGDIDDSTRLFNE 431
Score = 60.8 bits (146), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 83/175 (47%), Gaps = 15/175 (8%)
Query: 313 VLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKL 372
V+ N ++ CG + DA ++F M S+ SW MI G A NGL E ++ F +M+
Sbjct: 206 VMYNSLMGGLLACGMIEDALQLFRGMEKDSV-SWAAMIKGLAQNGLAKEAIECFREMKVQ 264
Query: 373 GLQPNEQTFLAVFSACGSADAIEEAF-IHFESMKSEFGISPGTEH-YLG--LVGVLGKCG 428
GL+ ++ F +V ACG AI E IH +++ F +H Y+G L+ + KC
Sbjct: 265 GLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNF-----QDHIYVGSALIDMYCKCK 319
Query: 429 HLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADP 483
L A+ ++ + W A+ +G + A ++ +D+ S DP
Sbjct: 320 CLHYAKTVFDRMK--QKNVVSWTAM---VVGYGQTGRAEEAVKIFLDMQRSGIDP 369
Score = 36.6 bits (83), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 68/152 (44%), Gaps = 8/152 (5%)
Query: 296 AKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYAD 355
K +H +++ + L N ++ Y S T ARRVFD + ++ SW+ ++ Y+
Sbjct: 25 VKMIHGNIIRALPYPETFLYNNIVHAYALMKSSTYARRVFDRIPQPNLFSWNNLLLAYSK 84
Query: 356 NGLGDEGLQLFEQM-RKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGT 414
GL E FE++ + G+ N + +S G A +A + +M +F +
Sbjct: 85 AGLISEMESTFEKLPDRDGVTWN--VLIEGYSLSGLVGAAVKA---YNTMMRDFSANLTR 139
Query: 415 EHYLGLVGVLGKCGHLFEAQQFIEQ--KLPFE 444
+ ++ + GH+ +Q Q KL FE
Sbjct: 140 VTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFE 171
>sp|Q9S7F4|PP206_ARATH Putative pentatricopeptide repeat-containing protein At2g01510
OS=Arabidopsis thaliana GN=PCMP-H36 PE=3 SV=1
Length = 825
Score = 246 bits (627), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 131/379 (34%), Positives = 215/379 (56%), Gaps = 29/379 (7%)
Query: 273 VKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDAR 332
++AD S F T+ + + K++H + ++S ++ + +++MY KCGS+ DA
Sbjct: 448 LRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAV 507
Query: 333 RVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSAD 392
+VF+ M DR+ SW+ +I+ +ADNG G+ + F +M + GLQP+ + L V +AC
Sbjct: 508 QVFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSHCG 567
Query: 393 AIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEA 452
+E+ +F++M +GI+P +HY ++ +LG+ G EA++ +++ +PFEP W +
Sbjct: 568 FVEQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDE-MPFEPDEIMWSS 626
Query: 453 LRNYARIHGDIDLEDHAEELMVDLDPSK---------------------ADPKK-IPTPP 490
+ N RIH + L + A E + ++ + D KK +
Sbjct: 627 VLNACRIHKNQSLAERAAEKLFSMEKLRDAAAYVSMSNIYAAAGEWEKVRDVKKAMRERG 686
Query: 491 PKKRTAISILDGKSRLVEFR--NPTLYRDDEKLKALNQMKEST----YVPDTRYVLHDID 544
KK A S ++ ++ F + T DE ++ +N++ Y PDT V+ D+D
Sbjct: 687 IKKVPAYSWVEVNHKIHVFSSNDQTHPNGDEIVRKINELTAEIEREGYKPDTSSVVQDVD 746
Query: 545 QEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRVCGDCHNAIKIMSRIVGRELIVR 604
++ K ++L YHSERLA+A+ LISTP P+ ++KNLR C DCH AIK++S+IV RE+ VR
Sbjct: 747 EQMKIESLKYHSERLAVAFALISTPEGCPIVVMKNLRACRDCHAAIKLISKIVKREITVR 806
Query: 605 DNKRFHHFKDGKCSCGDYW 623
D RFHHF +G CSCGDYW
Sbjct: 807 DTSRFHHFSEGVCSCGDYW 825
Score = 76.3 bits (186), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 86/187 (45%), Gaps = 11/187 (5%)
Query: 280 FYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMA 339
F T+ + N + +++H L +T L + N +++MY KC +A +F +
Sbjct: 354 FATMLSIAANLSSLQMGRQLHCQALLATADSILHVGNSLVDMYAKCEMFEEAELIFKSLP 413
Query: 340 DRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFI 399
R+ SW +I+GY GL GL+LF +MR L+ ++ TF V A S A +
Sbjct: 414 QRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASF-----ASL 468
Query: 400 HFESMKSEFGISPGTEHYL----GLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRN 455
F I G + GLV + KCG + +A Q E+ +P + A W AL +
Sbjct: 469 LLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEE-MP-DRNAVSWNALIS 526
Query: 456 YARIHGD 462
+GD
Sbjct: 527 AHADNGD 533
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 11/119 (9%)
Query: 313 VLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKL 372
V N +I + K G ++ AR +FD M DR++ +W +++ YA N DE +LF QM +
Sbjct: 80 VSTNTMISGHVKTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRS 139
Query: 373 G--LQPNEQTFLAVFSACGSA---DAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGK 426
P+ TF + C A +A+ + +H ++K F +P +L + VL K
Sbjct: 140 SSCTLPDHVTFTTLLPGCNDAVPQNAVGQ--VHAFAVKLGFDTNP----FLTVSNVLLK 192
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 57/114 (50%), Gaps = 2/114 (1%)
Query: 276 DASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGD--LVLNNKVIEMYGKCGSMTDARR 333
D F TL C + +VH + ++ + L ++N +++ Y + + A
Sbjct: 146 DHVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACV 205
Query: 334 VFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSA 387
+F+ + ++ +++ +I GY +GL E + LF +MR+ G QP++ TF V A
Sbjct: 206 LFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKA 259
Score = 42.7 bits (99), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/174 (18%), Positives = 80/174 (45%), Gaps = 10/174 (5%)
Query: 293 YENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMING 352
+ +++H + + D + N++++ Y K + + R +FD M + S++++I+
Sbjct: 266 FALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISS 325
Query: 353 YADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAF-IHFESMKSEFGIS 411
Y+ + L F +M+ +G F + S + +++ +H +++ + +
Sbjct: 326 YSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQALLA----T 381
Query: 412 PGTEHYLG--LVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYAR--IHG 461
+ ++G LV + KC +FE + I + LP T + + Y + +HG
Sbjct: 382 ADSILHVGNSLVDMYAKC-EMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHG 434
>sp|Q8LK93|PP145_ARATH Pentatricopeptide repeat-containing protein At2g02980
OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2
Length = 603
Score = 245 bits (625), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 137/385 (35%), Positives = 211/385 (54%), Gaps = 29/385 (7%)
Query: 267 ELMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCG 326
E+ K +K + ++ C + K +H Y + + + +N +I+M+ KCG
Sbjct: 220 EMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKVNTALIDMFAKCG 279
Query: 327 SMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFS 386
S+ DA +F+ M + +W MI YA++G ++ + +FE+MR +QP+E TFL + +
Sbjct: 280 SLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITFLGLLN 339
Query: 387 ACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPT 446
AC +EE +F M S+FGI P +HY +V +L + G+L +A +FI+ KLP PT
Sbjct: 340 ACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSRAGNLEDAYEFID-KLPISPT 398
Query: 447 AEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPT----------------PP 490
W L H ++DL + E + +LD S I +
Sbjct: 399 PMLWRILLAACSSHNNLDLAEKVSERIFELDDSHGGDYVILSNLYARNKKWEYVDSLRKV 458
Query: 491 PKKRTAISILDGKSRLVE------FRNPTLYRDDEKL-KALNQM----KESTYVPDTRYV 539
K R A+ + S V F + KL +AL++M K S YVPDT V
Sbjct: 459 MKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALDEMVKELKLSGYVPDTSMV 518
Query: 540 LH-DIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRVCGDCHNAIKIMSRIVG 598
+H +++ + KE L YHSE+LAI +GL++TP T +R++KNLRVC DCHNA K++S I G
Sbjct: 519 VHANMNDQEKEITLRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCRDCHNAAKLISLIFG 578
Query: 599 RELIVRDNKRFHHFKDGKCSCGDYW 623
R++++RD +RFHHF+DGKCSCGD+W
Sbjct: 579 RKVVLRDVQRFHHFEDGKCSCGDFW 603
Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 98/197 (49%), Gaps = 5/197 (2%)
Query: 266 IELMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKC 325
+E+++ G+ D F +L + C K E +++H ++ + ++ + +I MY +C
Sbjct: 118 VEILEDGILPDNYTFPSLLKACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTEC 177
Query: 326 GSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVF 385
+ AR VFD + + + ++ MI GYA +E L LF +M+ L+PNE T L+V
Sbjct: 178 EDVDSARCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVL 237
Query: 386 SACGSADAIEEA-FIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFE 444
S+C +++ +IH + K F + L+ + KCG L +A E K+ ++
Sbjct: 238 SSCALLGSLDLGKWIHKYAKKHSF--CKYVKVNTALIDMFAKCGSLDDAVSIFE-KMRYK 294
Query: 445 PTAEFWEALRNYARIHG 461
T + + YA HG
Sbjct: 295 DTQAWSAMIVAYAN-HG 310
Score = 42.0 bits (97), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 65/135 (48%), Gaps = 6/135 (4%)
Query: 326 GSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVF 385
SM+ AR +F+ M++ + ++ M GY+ E LF ++ + G+ P+ TF ++
Sbjct: 77 SSMSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLL 136
Query: 386 SACGSADAIEEAF-IHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFE 444
AC A A+EE +H SMK G+ L+ + +C + A+ ++ + E
Sbjct: 137 KACAVAKALEEGRQLHCLSMK--LGLDDNVYVCPTLINMYTECEDVDSARCVFDRIV--E 192
Query: 445 PTAEFWEAL-RNYAR 458
P + A+ YAR
Sbjct: 193 PCVVCYNAMITGYAR 207
>sp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protein At2g03880,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2
SV=1
Length = 630
Score = 244 bits (623), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 136/418 (32%), Positives = 224/418 (53%), Gaps = 36/418 (8%)
Query: 237 NQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDK----GVKADASCFYTLFELCGNPKW 292
++ GD ++ S+ + Q + A+EL + G A+ + ++ C
Sbjct: 218 DEMVTGDAIVWNSI--IGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLAL 275
Query: 293 YENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMING 352
E + H + ++ DL+LNN +++MY KCGS+ DA RVF+ M +R + +W MI+G
Sbjct: 276 LELGMQAHVHIVKYD--QDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISG 333
Query: 353 YADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP 412
A NG E L+LFE+M+ G +PN T + V AC A +E+ + +F SMK +GI P
Sbjct: 334 LAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDP 393
Query: 413 GTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEEL 472
EHY ++ +LGK G L +A + + + + EP A W L R+ ++ L ++A +
Sbjct: 394 VREHYGCMIDLLGKAGKLDDAVKLLNE-MECEPDAVTWRTLLGACRVQRNMVLAEYAAKK 452
Query: 473 MVDLDPSKADP---------------------KKIPTPPPKKRTAISILDGKSRLVEF-- 509
++ LDP A ++ KK S ++ ++ F
Sbjct: 453 VIALDPEDAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFII 512
Query: 510 ---RNPTLYRDDEKL-KALNQMKESTYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGL 565
+P + +KL + ++++ YVP+T +VL D++ E E +L +HSE+LA+A+GL
Sbjct: 513 GDNSHPQIVEVSKKLNQLIHRLTGIGYVPETNFVLQDLEGEQMEDSLRHHSEKLALAFGL 572
Query: 566 ISTPARTPLRIIKNLRVCGDCHNAIKIMSRIVGRELIVRDNKRFHHFKDGKCSCGDYW 623
++ P +RI KNLR+CGDCH K+ S++ R +++RD R+HHF+DGKCSCGDYW
Sbjct: 573 MTLPIEKVIRIRKNLRICGDCHVFCKLASKLEIRSIVIRDPIRYHHFQDGKCSCGDYW 630
Score = 64.3 bits (155), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 69/148 (46%), Gaps = 9/148 (6%)
Query: 295 NAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYA 354
+ + +H ++ + D+ + + +I+++ K G DA VFD M W+ +I G+A
Sbjct: 177 DVRMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFA 236
Query: 355 DNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIE---EAFIHFESMKSEFGIS 411
N D L+LF++M++ G + T +V AC +E +A +H + ++
Sbjct: 237 QNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYDQDLILN 296
Query: 412 PGTEHYLGLVGVLGKCGHLFEAQQFIEQ 439
LV + KCG L +A + Q
Sbjct: 297 N------ALVDMYCKCGSLEDALRVFNQ 318
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 77/156 (49%), Gaps = 7/156 (4%)
Query: 243 DQVLPPSVADLARLCQEGKVKEAIELMDK----GVKADASCFYTLFELCGNPKWYENAKK 298
DQ L S + RLC + + A++ MD G+ AD++ + L + C + +
Sbjct: 25 DQTLLLS--EFTRLCYQRDLPRAMKAMDSLQSHGLWADSATYSELIKCCISNRAVHEGNL 82
Query: 299 VHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGL 358
+ + + R + L N +I MY K + DA ++FD M R++ SW MI+ Y+ +
Sbjct: 83 ICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKI 142
Query: 359 GDEGLQLFEQMRKLGLQPNEQTFLAVFSAC-GSADA 393
+ L+L M + ++PN T+ +V +C G +D
Sbjct: 143 HQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDV 178
>sp|Q9SZT8|PP354_ARATH Pentatricopeptide repeat-containing protein At4g37380,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=3
SV=1
Length = 632
Score = 242 bits (617), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 135/380 (35%), Positives = 199/380 (52%), Gaps = 33/380 (8%)
Query: 274 KADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARR 333
K D C E + +H + S IR ++ + +I+MY KCGS+ +A
Sbjct: 256 KPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVL 315
Query: 334 VFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKL-GLQPNEQTFLAVFSACGSAD 392
VF+ + + +W+ MI GYA +G + L+LF +M+ + GLQP + TF+ AC A
Sbjct: 316 VFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAG 375
Query: 393 AIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEA 452
+ E FESM E+GI P EHY LV +LG+ G L A + I + + + + W +
Sbjct: 376 LVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETI-KNMNMDADSVLWSS 434
Query: 453 LRNYARIHGDIDLEDHAEELMVDLD--------------PSKADPKKIPT-------PPP 491
+ ++HGD L E ++ L+ S D + +
Sbjct: 435 VLGSCKLHGDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGI 494
Query: 492 KKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQM--------KESTYVPDTRYVLHDI 543
K IS ++ ++++ EFR R+ K K + M K YVP+T VL D+
Sbjct: 495 VKEPGISTIEIENKVHEFRAGD--REHSKSKEIYTMLRKISERIKSHGYVPNTNTVLQDL 552
Query: 544 DQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRVCGDCHNAIKIMSRIVGRELIV 603
++ KEQ+L HSERLAIAYGLIST +PL+I KNLRVC DCH K++S+I GR++++
Sbjct: 553 EETEKEQSLQVHSERLAIAYGLISTKPGSPLKIFKNLRVCSDCHTVTKLISKITGRKIVM 612
Query: 604 RDNKRFHHFKDGKCSCGDYW 623
RD RFHHF DG CSCGD+W
Sbjct: 613 RDRNRFHHFTDGSCSCGDFW 632
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 69/124 (55%), Gaps = 4/124 (3%)
Query: 312 LVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRK 371
LV + +I Y K G++ AR +FD M +R + SW++MI+GYA +G ++ L LF+++
Sbjct: 192 LVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLA 251
Query: 372 LGL-QPNEQTFLAVFSACGSADAIEEA-FIHFESMKSEFGISPGTEHYLGLVGVLGKCGH 429
G +P+E T +A SAC A+E +IH S I + GL+ + KCG
Sbjct: 252 EGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSR--IRLNVKVCTGLIDMYSKCGS 309
Query: 430 LFEA 433
L EA
Sbjct: 310 LEEA 313
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 56/127 (44%), Gaps = 5/127 (3%)
Query: 313 VLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKL 372
VLN K+ Y G + + +F D + + IN + NGL D+ L+ Q+
Sbjct: 65 VLNLKLHRAYASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSS 124
Query: 373 GLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFE 432
+ PNE TF ++ +C + IH +K GI P GLV V K G +
Sbjct: 125 EINPNEFTFSSLLKSCSTKSG---KLIHTHVLKFGLGIDPYVA--TGLVDVYAKGGDVVS 179
Query: 433 AQQFIEQ 439
AQ+ ++
Sbjct: 180 AQKVFDR 186
>sp|Q0WN60|PPR48_ARATH Pentatricopeptide repeat-containing protein At1g18485
OS=Arabidopsis thaliana GN=PCMP-H8 PE=2 SV=2
Length = 970
Score = 241 bits (614), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 124/355 (34%), Positives = 202/355 (56%), Gaps = 27/355 (7%)
Query: 296 AKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYAD 355
++ H Y L+ + D + +I+MY K GS+T + +VF+ + ++S SW+ MI GY
Sbjct: 616 GREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGI 675
Query: 356 NGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTE 415
+GL E ++LFE+M++ G P++ TFL V +AC + I E + + MKS FG+ P +
Sbjct: 676 HGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLK 735
Query: 416 HYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVD 475
HY ++ +LG+ G L +A + + +++ E W++L + RIH ++++ + + +
Sbjct: 736 HYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFE 795
Query: 476 LDPSK-----------------ADPKKIP----TPPPKKRTAISILDGKSRLVEFRNPTL 514
L+P K D +K+ +K S ++ ++ F
Sbjct: 796 LEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNRKVFSFVVGER 855
Query: 515 YRDD-EKLKALNQMKEST-----YVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLIST 568
+ D E++K+L + E Y PDT V HD+ +E K + L HSE+LA+ YGLI T
Sbjct: 856 FLDGFEEIKSLWSILEMKISKMGYRPDTMSVQHDLSEEEKIEQLRGHSEKLALTYGLIKT 915
Query: 569 PARTPLRIIKNLRVCGDCHNAIKIMSRIVGRELIVRDNKRFHHFKDGKCSCGDYW 623
T +R+ KNLR+C DCHNA K++S+++ RE++VRDNKRFHHFK+G CSCGDYW
Sbjct: 916 SEGTTIRVYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKNGVCSCGDYW 970
Score = 75.9 bits (185), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 60/117 (51%)
Query: 272 GVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDA 331
G+ D+ +L C K K+VH + +++ + DL + V+ +Y CG +
Sbjct: 491 GLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTV 550
Query: 332 RRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSAC 388
+ +FD M D+S+ SW+ +I GY NG D L +F QM G+Q + + VF AC
Sbjct: 551 QALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGAC 607
Score = 66.2 bits (160), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 62/249 (24%), Positives = 100/249 (40%), Gaps = 28/249 (11%)
Query: 270 DKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMT 329
D D + T+ +C + K VH + ++ + +LVLNN +++MY KCG +T
Sbjct: 285 DGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCIT 344
Query: 330 DARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLG--LQPNEQTFLAVFSA 387
+A+ +F ++++ SW+ M+ G++ G + QM G ++ +E T L
Sbjct: 345 NAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPV 404
Query: 388 CGSADAIEEAF------IHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKL 441
C E+F +H S+K EF + + V KCG L AQ+
Sbjct: 405 C-----FHESFLPSLKELHCYSLKQEFVYNELVAN--AFVASYAKCGSLSYAQRVFHG-- 455
Query: 442 PFEPTAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILD 501
T W AL + HA+ L KI P T S+L
Sbjct: 456 IRSKTVNSWNAL-----------IGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLS 504
Query: 502 GKSRLVEFR 510
S+L R
Sbjct: 505 ACSKLKSLR 513
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 61/114 (53%), Gaps = 3/114 (2%)
Query: 283 LFELCGNPKWYENAKKVHDYFLQST-IRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADR 341
L + G K E +K+H ST +R D VL ++I MY CGS D+R VFD + +
Sbjct: 90 LLQASGKRKDIEMGRKIHQLVSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDALRSK 149
Query: 342 SMDSWHLMINGYADNGLGDEGLQLF-EQMRKLGLQPNEQTFLAVFSAC-GSADA 393
++ W+ +I+ Y+ N L DE L+ F E + L P+ T+ V AC G +D
Sbjct: 150 NLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDV 203
Score = 59.7 bits (143), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 79/171 (46%), Gaps = 11/171 (6%)
Query: 273 VKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDAR 332
VKAD +C + + + K++H Y L+ + ++ N + Y KCGS++ A+
Sbjct: 391 VKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQ 450
Query: 333 RVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSAD 392
RVF + ++++SW+ +I G+A + L QM+ GL P+ T ++ SAC
Sbjct: 451 RVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLK 510
Query: 393 AIE-----EAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIE 438
++ FI ++ + + YL ++ + CG L Q +
Sbjct: 511 SLRLGKEVHGFIIRNWLERDLFV------YLSVLSLYIHCGELCTVQALFD 555
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 4/95 (4%)
Query: 299 VHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGL 358
VH +++ + D+ + N ++ YG G +TDA ++FD M +R++ SW+ MI ++DNG
Sbjct: 209 VHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGF 268
Query: 359 GDEGLQLFEQMRKL----GLQPNEQTFLAVFSACG 389
+E L +M + P+ T + V C
Sbjct: 269 SEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCA 303
>sp|Q9C6G2|PPR63_ARATH Pentatricopeptide repeat-containing protein At1g29710,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H67 PE=1
SV=1
Length = 475
Score = 240 bits (612), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 137/400 (34%), Positives = 214/400 (53%), Gaps = 24/400 (6%)
Query: 246 LPPSVA------DLARLCQEGKVKEAIELMD----KGVKADASCFYTLFELCGNPKWYEN 295
+ PSVA LC +G +EA+E++D KG D L +LCG P+ E
Sbjct: 78 VSPSVAQNVTIETFDSLCIQGNWREAVEVLDYLENKGYAMDLIRLLGLAKLCGKPEALEA 137
Query: 296 AKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYAD 355
A+ VH+ + D+ N +IEMY C S+ DA +VF+ M + + + +M+ + +
Sbjct: 138 ARVVHECIIALVSPCDVGARNAIIEMYSGCCSVDDALKVFEEMPEWNSGTLCVMMRCFVN 197
Query: 356 NGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTE 415
NG G+E + LF + ++ G +PN + F VFS C ++E + F++M E+GI P E
Sbjct: 198 NGYGEEAIDLFTRFKEEGNKPNGEIFNQVFSTCTLTGDVKEGSLQFQAMYREYGIVPSME 257
Query: 416 HYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVD 475
HY + +L GHL EA F+E ++P EP+ + WE L N +R+HGD++L D EL+
Sbjct: 258 HYHSVTKMLATSGHLDEALNFVE-RMPMEPSVDVWETLMNLSRVHGDVELGDRCAELVEK 316
Query: 476 LDPSKADPKKIPTPPPKKRTAISILDGKSRL----------VEFRNPTLYRDDEKLKAL- 524
LD ++ D K + + +R V+ +P + E L +L
Sbjct: 317 LDATRLDKVSSAGLVATKASDFVKKEPSTRSEPYFYSTFRPVDSSHPQMNIIYETLMSLR 376
Query: 525 NQMKESTYVPDTRYVLHDI-DQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRVC 583
+Q+KE YVPDTRY I E KEQ Y E +A+ L+ + R+ + ++ N+R+
Sbjct: 377 SQLKEMGYVPDTRYYRSLIMAMENKEQIFGYR-EEIAVVESLLKSKPRSAITLLTNIRIV 435
Query: 584 GDCHNAIKIMSRIVGRELIVRDNKRFHHFKDGKCSCGDYW 623
GDCH+ +K+MS I GR++I RD K +H FK+G C C + W
Sbjct: 436 GDCHDMMKLMSVITGRDMIKRDAKIYHLFKNGVCRCNNLW 475
>sp|Q9FND7|PP410_ARATH Putative pentatricopeptide repeat-containing protein At5g40405
OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1
Length = 612
Score = 239 bits (609), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 131/397 (32%), Positives = 217/397 (54%), Gaps = 32/397 (8%)
Query: 258 QEGKVKEAIELMD----KGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLV 313
Q G+ +EA+ + +GVK + ++ C + + H Y ++ I+ +
Sbjct: 217 QVGESREALNVFHLMQLEGVKVNGVAMISVLSACTQLGALDQGRWAHSYIERNKIKITVR 276
Query: 314 LNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLG 373
L ++++Y KCG M A VF M ++++ +W +NG A NG G++ L+LF M++ G
Sbjct: 277 LATTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLELFSLMKQDG 336
Query: 374 LQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEA 433
+ PN TF++V C ++E HF+SM++EFGI P EHY LV + + G L +A
Sbjct: 337 VTPNAVTFVSVLRGCSVVGFVDEGQRHFDSMRNEFGIEPQLEHYGCLVDLYARAGRLEDA 396
Query: 434 QQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSK-----------AD 482
I+Q +P +P A W +L + +R++ +++L A + M++L+ + AD
Sbjct: 397 VSIIQQ-MPMKPHAAVWSSLLHASRMYKNLELGVLASKKMLELETANHGAYVLLSNIYAD 455
Query: 483 P----------KKIPTPPPKKRTAISILDGKSRLVEF-----RNPTLYRDDEKLKALNQ- 526
+ + + +K+ S+++ + EF +P + D K +++
Sbjct: 456 SNDWDNVSHVRQSMKSKGVRKQPGCSVMEVNGEVHEFFVGDKSHPKYTQIDAVWKDISRR 515
Query: 527 MKESTYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRVCGDC 586
++ + Y DT V+ DID+E KE AL HSE+ AIA+G++S P+RI+KNLRVCGDC
Sbjct: 516 LRLAGYKADTTPVMFDIDEEEKEDALCLHSEKAAIAFGIMSLKEDVPIRIVKNLRVCGDC 575
Query: 587 HNAIKIMSRIVGRELIVRDNKRFHHFKDGKCSCGDYW 623
H ++S+I RE+IVRD RFHHFKDG CSC +W
Sbjct: 576 HQVSMMISKIFNREIIVRDRNRFHHFKDGHCSCNGFW 612
Score = 62.8 bits (151), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 64/128 (50%), Gaps = 7/128 (5%)
Query: 311 DLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMR 370
D V ++ +CG + AR++F+ M +R +W+ MI+GYA G E L +F M+
Sbjct: 173 DFVCRTAMVTACARCGDVVFARKLFEGMPERDPIAWNAMISGYAQVGESREALNVFHLMQ 232
Query: 371 KLGLQPNEQTFLAVFSACGSADAIEE---AFIHFESMKSEFGISPGTEHYLGLVGVLGKC 427
G++ N ++V SAC A+++ A + E K + + T LV + KC
Sbjct: 233 LEGVKVNGVAMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLATT----LVDLYAKC 288
Query: 428 GHLFEAQQ 435
G + +A +
Sbjct: 289 GDMEKAME 296
>sp|Q5G1T1|PP272_ARATH Pentatricopeptide repeat-containing protein At3g49170,
chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2
SV=1
Length = 850
Score = 238 bits (607), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 135/388 (34%), Positives = 208/388 (53%), Gaps = 32/388 (8%)
Query: 267 ELMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCG 326
E+ ++ + A F +L N +++H ++ + + + N +I MY KCG
Sbjct: 464 EITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCG 523
Query: 327 SMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFS 386
S+ A RVF+ M +R++ SW MI G+A +G L+ F QM + G++PNE T++A+ S
Sbjct: 524 SIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILS 583
Query: 387 ACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPT 446
AC + E + HF SM + I P EHY +V +L + G L +A +FI +PF+
Sbjct: 584 ACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFI-NTMPFQAD 642
Query: 447 AEFWEALRNYARIHGDIDLEDHAEELMVDLDP---------------------SKADPKK 485
W R+H + +L A +++LDP S +K
Sbjct: 643 VLVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYACAGKWEESTEMRRK 702
Query: 486 IPTPPPKKRTAISILDGKSRLVEF-----RNPTLYRD-DEKLKALNQMKESTYVPDTRYV 539
+ K S ++ ++ +F +P ++ DE + + ++K YVPDT V
Sbjct: 703 MKERNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDELDRLITEIKRCGYVPDTDLV 762
Query: 540 LHDIDQEAKEQA---LLY-HSERLAIAYGLISTPARTPLRIIKNLRVCGDCHNAIKIMSR 595
LH +++E E LLY HSE++A+A+GLIST P+R+ KNLRVCGDCHNA+K +S
Sbjct: 763 LHKLEEENDEAEKERLLYQHSEKIAVAFGLISTSKSRPVRVFKNLRVCGDCHNAMKYIST 822
Query: 596 IVGRELIVRDNKRFHHFKDGKCSCGDYW 623
+ GRE+++RD RFHHFKDGKCSC DYW
Sbjct: 823 VSGREIVLRDLNRFHHFKDGKCSCNDYW 850
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 77/146 (52%), Gaps = 11/146 (7%)
Query: 253 LARLCQEGKVKEAI----ELMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTI 308
+ R Q G +EAI +++ G ++D ++F C + K++H + ++S +
Sbjct: 241 ITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRSGL 300
Query: 309 RGDLVLNNKVIEMYGKC---GSMTDARRVFDHMADRSMDSWHLMINGYADN-GLGDEGLQ 364
D+ +++MY KC GS+ D R+VFD M D S+ SW +I GY N L E +
Sbjct: 301 VDDV--ECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAIN 358
Query: 365 LFEQMRKLG-LQPNEQTFLAVFSACG 389
LF +M G ++PN TF + F ACG
Sbjct: 359 LFSEMITQGHVEPNHFTFSSAFKACG 384
Score = 70.9 bits (172), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 71/135 (52%), Gaps = 5/135 (3%)
Query: 265 AIELMDK-GVK-ADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMY 322
A++LM + G++ D+ F +L + C + + K VH ++ I D VL N +I +Y
Sbjct: 48 ALDLMARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLY 107
Query: 323 GKCGSMTDARRVFDHM---ADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQ 379
K G A VF+ M R + SW M+ Y +NG + +++F + +LGL PN+
Sbjct: 108 SKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDY 167
Query: 380 TFLAVFSACGSADAI 394
+ AV AC ++D +
Sbjct: 168 CYTAVIRACSNSDFV 182
Score = 57.0 bits (136), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 63/131 (48%), Gaps = 4/131 (3%)
Query: 262 VKEAIELMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQST--IRGDLVLNNKVI 319
+K +E ++ G+ + C+ + C N + +V FL T D+ + +I
Sbjct: 151 IKVFVEFLELGLVPNDYCYTAVIRACSNSD-FVGVGRVTLGFLMKTGHFESDVCVGCSLI 209
Query: 320 EMYGKC-GSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNE 378
+M+ K S +A +VFD M++ ++ +W LMI G E ++ F M G + ++
Sbjct: 210 DMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDK 269
Query: 379 QTFLAVFSACG 389
T +VFSAC
Sbjct: 270 FTLSSVFSACA 280
>sp|Q9M2Y7|PP274_ARATH Pentatricopeptide repeat-containing protein At3g49710
OS=Arabidopsis thaliana GN=PCMP-H79 PE=2 SV=1
Length = 721
Score = 238 bits (606), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 144/397 (36%), Positives = 219/397 (55%), Gaps = 34/397 (8%)
Query: 259 EGKVKEAIELMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLV-LNNK 317
E VK ++ G + D F + C N K++H ++S I + + +NN
Sbjct: 327 EEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQCKQIHGLAIKSHIPSNRISVNNA 386
Query: 318 VIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPN 377
+I +Y K G++ DAR VFD M + + S++ MI GYA +G G E L L+++M G+ PN
Sbjct: 387 LISLYYKSGNLQDARWVFDRMPELNAVSFNCMIKGYAQHGHGTEALLLYQRMLDSGIAPN 446
Query: 378 EQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFI 437
+ TF+AV SAC ++E +F +MK F I P EHY ++ +LG+ G L EA++FI
Sbjct: 447 KITFVAVLSACAHCGKVDEGQEYFNTMKETFKIEPEAEHYSCMIDLLGRAGKLEEAERFI 506
Query: 438 EQKLPFEPTAEFWEALRNYARIHGDIDL-EDHAEELMVDLDPSKADP------------- 483
+ +P++P + W AL R H ++ L E A ELMV + P A P
Sbjct: 507 DA-MPYKPGSVAWAALLGACRKHKNMALAERAANELMV-MQPLAATPYVMLANMYADARK 564
Query: 484 --------KKIPTPPPKKRTAISILDGKSR-----LVEFRNPTLYRDDEKL-KALNQMKE 529
K + +K+ S ++ K + ++ +P + +E L + + +MK+
Sbjct: 565 WEEMASVRKSMRGKRIRKKPGCSWIEVKKKKHVFVAEDWSHPMIREVNEYLEEMMKKMKK 624
Query: 530 STYVPDTRYVLHDIDQEAKEQALL---YHSERLAIAYGLISTPARTPLRIIKNLRVCGDC 586
YV D ++ + D+ + + +HSE+LA+A+GL+ST L ++KNLR+CGDC
Sbjct: 625 VGYVMDKKWAMVKEDEAGEGDEEMRLGHHSEKLAVAFGLMSTRDGEELVVVKNLRICGDC 684
Query: 587 HNAIKIMSRIVGRELIVRDNKRFHHFKDGKCSCGDYW 623
HNAIK MS + GRE+IVRDN RFH FKDGKCSCGDYW
Sbjct: 685 HNAIKFMSAVAGREIIVRDNLRFHCFKDGKCSCGDYW 721
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 66/126 (52%), Gaps = 4/126 (3%)
Query: 267 ELMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCG 326
E++ KG K D ++ + ++ H +++ + + + +I+ Y KCG
Sbjct: 230 EMIFKGFKIDMFTLASVLNALTSLDHLIGGRQFHGKLIKAGFHQNSHVGSGLIDFYSKCG 289
Query: 327 S---MTDARRVFDHMADRSMDSWHLMINGYADNG-LGDEGLQLFEQMRKLGLQPNEQTFL 382
M D+ +VF + + W+ MI+GY+ N L +E ++ F QM+++G +P++ +F+
Sbjct: 290 GCDGMYDSEKVFQEILSPDLVVWNTMISGYSMNEELSEEAVKSFRQMQRIGHRPDDCSFV 349
Query: 383 AVFSAC 388
V SAC
Sbjct: 350 CVTSAC 355
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 54/125 (43%), Gaps = 31/125 (24%)
Query: 295 NAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVF------------------- 335
K +H +++S + L+N + +Y KCG ++ AR F
Sbjct: 26 TGKSLHALYVKSIVASSTYLSNHFVNLYSKCGRLSYARAAFYSTEEPNVFSYNVIVKAYA 85
Query: 336 ----DHMADRSMD--------SWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLA 383
H+A + D S++ +I+GYAD + LF++MRKLG + + T
Sbjct: 86 KDSKIHIARQLFDEIPQPDTVSYNTLISGYADARETFAAMVLFKRMRKLGFEVDGFTLSG 145
Query: 384 VFSAC 388
+ +AC
Sbjct: 146 LIAAC 150
Score = 39.7 bits (91), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 66/145 (45%), Gaps = 9/145 (6%)
Query: 314 LNNKVIEMYGKCGSMTDARRVFDHMAD-RSMDSWHLMINGYADNGLGDEGLQLFEQMRKL 372
+NN + Y K G + +A VF M + R SW+ MI Y + G + L L+++M
Sbjct: 175 VNNAFVTYYSKGGLLREAVSVFYGMDELRDEVSWNSMIVAYGQHKEGAKALALYKEMIFK 234
Query: 373 GLQPNEQTFLAVFSACGSAD-AIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCG--- 428
G + + T +V +A S D I H + +K+ G + GL+ KCG
Sbjct: 235 GFKIDMFTLASVLNALTSLDHLIGGRQFHGKLIKA--GFHQNSHVGSGLIDFYSKCGGCD 292
Query: 429 HLFEAQQFIEQKLPFEPTAEFWEAL 453
++++++ ++ L P W +
Sbjct: 293 GMYDSEKVFQEILS--PDLVVWNTM 315
>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2
SV=1
Length = 738
Score = 237 bits (605), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 136/399 (34%), Positives = 212/399 (53%), Gaps = 34/399 (8%)
Query: 258 QEGKVKEAIEL-----MDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDL 312
Q GK EA+ + + K +K + + C E + +H Y + IR +
Sbjct: 341 QNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNF 400
Query: 313 VLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKL 372
+ + +I MY KCG + +R VF+ + R + W MI G A +G G+E + +F +M++
Sbjct: 401 HVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEA 460
Query: 373 GLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFE 432
++PN TF VF AC ++EA F M+S +GI P +HY +V VLG+ G+L +
Sbjct: 461 NVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEK 520
Query: 433 AQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADP--------- 483
A +FIE +P P+ W AL +IH +++L + A +++L+P
Sbjct: 521 AVKFIEA-MPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYA 579
Query: 484 ------------KKIPTPPPKKRTAISILDGKSRLVEFRN-----PTLYRDDEKL-KALN 525
K + KK S ++ + EF + P + KL + +
Sbjct: 580 KLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVME 639
Query: 526 QMKESTYVPDTRYVLHDIDQE-AKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRVCG 584
++K + Y P+ VL I++E KEQ+L HSE+LAI YGLIST A +R+IKNLRVCG
Sbjct: 640 KLKSNGYEPEISQVLQIIEEEEMKEQSLNLHSEKLAICYGLISTEAPKVIRVIKNLRVCG 699
Query: 585 DCHNAIKIMSRIVGRELIVRDNKRFHHFKDGKCSCGDYW 623
DCH+ K++S++ RE+IVRD RFHHF++G+CSC D+W
Sbjct: 700 DCHSVAKLISQLYDREIIVRDRYRFHHFRNGQCSCNDFW 738
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/244 (25%), Positives = 108/244 (44%), Gaps = 47/244 (19%)
Query: 258 QEGKVKEAIELMDK----GVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLV 313
Q+G +A+EL K VKA + C + E ++V Y ++ + +L
Sbjct: 209 QKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLT 268
Query: 314 LNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYA------------------- 354
L N +++MY KCGS+ DA+R+FD M ++ +W M++GYA
Sbjct: 269 LANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKD 328
Query: 355 ------------DNGLGDEGLQLFEQMR-KLGLQPNEQTFLAVFSACGSADAIEEA-FIH 400
NG +E L +F +++ + ++ N+ T ++ SAC A+E +IH
Sbjct: 329 IVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIH 388
Query: 401 FESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQF---IEQKLPFEPTAEFWEALRNYA 457
S + GI L+ + KCG L ++++ +E++ F W A+
Sbjct: 389 --SYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVF-----VWSAMIGGL 441
Query: 458 RIHG 461
+HG
Sbjct: 442 AMHG 445
Score = 66.6 bits (161), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 54/100 (54%)
Query: 296 AKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYAD 355
+ +H ++S + D+ + N +I Y CG + A +VF + ++ + SW+ MING+
Sbjct: 150 GQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQ 209
Query: 356 NGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIE 395
G D+ L+LF++M ++ + T + V SAC +E
Sbjct: 210 KGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLE 249
>sp|Q683I9|PP295_ARATH Pentatricopeptide repeat-containing protein At3g62890
OS=Arabidopsis thaliana GN=PCMP-H82 PE=2 SV=1
Length = 573
Score = 237 bits (605), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 139/402 (34%), Positives = 216/402 (53%), Gaps = 39/402 (9%)
Query: 260 GKVKEAIELM---------DKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRG 310
GK KEA++L + V+ + T+ CG E K VH Y + +
Sbjct: 173 GKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLGALEQGKWVHAYIDKYHVEI 232
Query: 311 DLVLNNKVIEMYGKCGSMTDARRVFDHM-ADRSMDSWHLMINGYADNGLGDEGLQLFEQM 369
D+VL +I+MY KCGS+ A+RVF+ + + + + ++ MI A GL DE QLF +M
Sbjct: 233 DIVLGTALIDMYAKCGSLERAKRVFNALGSKKDVKAYSAMICCLAMYGLTDECFQLFSEM 292
Query: 370 RKL-GLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCG 428
+ PN TF+ + AC I E +F+ M EFGI+P +HY +V + G+ G
Sbjct: 293 TTSDNINPNSVTFVGILGACVHRGLINEGKSYFKMMIEEFGITPSIQHYGCMVDLYGRSG 352
Query: 429 HLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVDLDP---------- 478
+ EA+ FI +P EP W +L + +R+ GDI + A + +++LDP
Sbjct: 353 LIKEAESFIAS-MPMEPDVLIWGSLLSGSRMLGDIKTCEGALKRLIELDPMNSGAYVLLS 411
Query: 479 -----------SKADPKKIPTPPPKKRTAISILDGKSRLVEFR-NPTLYRDDEKLKAL-- 524
K ++ K S ++ + + EF ++ E++ A+
Sbjct: 412 NVYAKTGRWMEVKCIRHEMEVKGINKVPGCSYVEVEGVVHEFVVGDESQQESERIYAMLD 471
Query: 525 ---NQMKESTYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLR 581
+++E+ YV DT+ VL D++++ KE AL YHSE+LAIA+ L+ T TP+RIIKNLR
Sbjct: 472 EIMQRLREAGYVTDTKEVLLDLNEKDKEIALSYHSEKLAIAFCLMKTRPGTPVRIIKNLR 531
Query: 582 VCGDCHNAIKIMSRIVGRELIVRDNKRFHHFKDGKCSCGDYW 623
+CGDCH +K++S++ RE++VRD RFHHF+DG CSC D+W
Sbjct: 532 ICGDCHLVMKMISKLFSREIVVRDCNRFHHFRDGSCSCRDFW 573
Score = 76.3 bits (186), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 83/161 (51%), Gaps = 19/161 (11%)
Query: 283 LFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRS 342
++ CG+ + +A++V D + DL N V+ Y K G + DAR++FD M +R+
Sbjct: 106 MYSSCGDLR---SAQRVFD----DSGSKDLPAWNSVVNAYAKAGLIDDARKLFDEMPERN 158
Query: 343 MDSWHLMINGYADNGLGDEGLQLFEQMR-----KLGLQPNEQTFLAVFSACGSADAIEEA 397
+ SW +INGY G E L LF +M+ + ++PNE T V SACG A+E+
Sbjct: 159 VISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLGALEQG 218
Query: 398 -FIH--FESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQ 435
++H + E I GT L+ + KCG L A++
Sbjct: 219 KWVHAYIDKYHVEIDIVLGT----ALIDMYAKCGSLERAKR 255
>sp|Q8S8Q7|PP183_ARATH Pentatricopeptide repeat-containing protein At2g34370,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H25 PE=2
SV=1
Length = 469
Score = 236 bits (603), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 153/489 (31%), Positives = 234/489 (47%), Gaps = 61/489 (12%)
Query: 161 YQGQRSPNQGQVYPHQQQPHSNQYQNPGNQNFQQPRSPNQWNNQQNQGYPQAR--NSYQQ 218
Y + + + + Q H N + Q + W QN+ + Q R +SY Q
Sbjct: 16 YLWSATQTTSRCFNSRAQSH-NLITKTITSSLQDVLTRPIW---QNRSFVQCRRVSSYAQ 71
Query: 219 VSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMD----KGVK 274
+ HQ ++ LC++ K++EA+E++D KG
Sbjct: 72 MVNNHQ----------------------SVTIETFDALCKQVKIREALEVIDILEDKGYI 109
Query: 275 ADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRV 334
D L +LCG + E A+ VHD R + VIEMY C S DA V
Sbjct: 110 VDFPRLLGLAKLCGEVEALEEARVVHDCITPLDARS----YHTVIEMYSGCRSTDDALNV 165
Query: 335 FDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAI 394
F+ M R+ ++W MI A NG G+ + +F + + G +P+++ F AVF AC S I
Sbjct: 166 FNEMPKRNSETWGTMIRCLAKNGEGERAIDMFTRFIEEGNKPDKEIFKAVFFACVSIGDI 225
Query: 395 EEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALR 454
E +HFESM ++G+ E Y+ ++ +L CGHL EA F+E ++ EP+ E WE L
Sbjct: 226 NEGLLHFESMYRDYGMVLSMEDYVNVIEMLAACGHLDEALDFVE-RMTVEPSVEMWETLM 284
Query: 455 NYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTL 514
N + G ++L D EL+ LD S+ + K + +L E R +
Sbjct: 285 NLCWVQGYLELGDRFAELIKKLDASRMSKESNAGLVAAKASD----SAMEKLKELRYCQM 340
Query: 515 YRDDEK-------------------LKALN-QMKESTYVPDTRYVLHDIDQEAKEQALLY 554
RDD K ++L QM + +VP TR +++E KE+ LL+
Sbjct: 341 IRDDPKKRMHEFRAGDTSHLGTVSAFRSLKVQMLDIGFVPATRVCFVTVEEEEKEEQLLF 400
Query: 555 HSERLAIAYGLISTPARTPLRIIKNLRVCGDCHNAIKIMSRIVGRELIVRDNKRFHHFKD 614
S +LA A+ +I++ AR PL +++N+R C D HN K++S I GR LI RD K++H +K+
Sbjct: 401 RSNKLAFAHAIINSEARRPLTVLQNMRTCIDGHNTFKMISLITGRALIQRDKKKYHFYKN 460
Query: 615 GKCSCGDYW 623
G CSC DYW
Sbjct: 461 GVCSCKDYW 469
>sp|Q9LTF4|PP429_ARATH Putative pentatricopeptide repeat-containing protein At5g52630
OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1
Length = 588
Score = 236 bits (601), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 136/400 (34%), Positives = 219/400 (54%), Gaps = 39/400 (9%)
Query: 258 QEGKVKEAIELMDKGVKADASC----FYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLV 313
Q G+ +EA+ L + + + + F ++ +C N E +++H ++S+
Sbjct: 194 QMGENEEALWLFKEALFENLAVNDYSFSSVISVCANSTLLELGRQIHGLSIKSSFDSSSF 253
Query: 314 LNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLG 373
+ + ++ +Y KCG A +VF+ + +++ W+ M+ YA + + ++LF++M+ G
Sbjct: 254 VGSSLVSLYSKCGVPEGAYQVFNEVPVKNLGIWNAMLKAYAQHSHTQKVIELFKRMKLSG 313
Query: 374 LQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEA 433
++PN TFL V +AC A ++E +F+ MK E I P +HY LV +LG+ G L EA
Sbjct: 314 MKPNFITFLNVLNACSHAGLVDEGRYYFDQMK-ESRIEPTDKHYASLVDMLGRAGRLQEA 372
Query: 434 QQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADP---------- 483
+ I +P +PT W AL +H + +L A + + +L P +
Sbjct: 373 LEVI-TNMPIDPTESVWGALLTSCTVHKNTELAAFAADKVFELGPVSSGMHISLSNAYAA 431
Query: 484 -----------KKIPTPPPKKRTAISILDGKSRLVEF--------RNPTLYRDDEKLKAL 524
K + KK T +S ++ ++++ F ++ +Y EKL L
Sbjct: 432 DGRFEDAAKARKLLRDRGEKKETGLSWVEERNKVHTFAAGERRHEKSKEIY---EKLAEL 488
Query: 525 NQ-MKESTYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRVC 583
+ M+++ Y+ DT YVL ++D + K Q + YHSERLAIA+GLI+ PA P+R++KNLRVC
Sbjct: 489 GEEMEKAGYIADTSYVLREVDGDEKNQTIRYHSERLAIAFGLITFPADRPIRVMKNLRVC 548
Query: 584 GDCHNAIKIMSRIVGRELIVRDNKRFHHFKDGKCSCGDYW 623
GDCHNAIK MS R +IVRDN RFH F+DGKCSC DYW
Sbjct: 549 GDCHNAIKFMSVCTRRVIIVRDNNRFHRFEDGKCSCNDYW 588
Score = 68.9 bits (167), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 57/100 (57%)
Query: 296 AKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYAD 355
+ VH +++ D+ + + +++MY KCG + AR++FD M R++ +W M+ GYA
Sbjct: 135 GRSVHCLSMKTGYDADVFVGSSLVDMYAKCGEIVYARKMFDEMPQRNVVTWSGMMYGYAQ 194
Query: 356 NGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIE 395
G +E L LF++ L N+ +F +V S C ++ +E
Sbjct: 195 MGENEEALWLFKEALFENLAVNDYSFSSVISVCANSTLLE 234
Score = 35.0 bits (79), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 70/150 (46%), Gaps = 17/150 (11%)
Query: 298 KVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNG 357
++H Y ++S + ++ N +I Y K D+RR F+ +S +W +I+ +A N
Sbjct: 36 QLHGYVVKSGLSLIPLVANNLINFYSKSQLPFDSRRAFEDSPQKSSTTWSSIISCFAQNE 95
Query: 358 LGDEGLQLFEQMRKLGLQPNEQTF------LAVFSACGSADAIEEAFIHFESMKSEFGIS 411
L L+ ++M L+P++ A+ S C + +H SMK+ +
Sbjct: 96 LPWMSLEFLKKMMAGNLRPDDHVLPSATKSCAILSRCDIGRS-----VHCLSMKTGY--- 147
Query: 412 PGTEHYLG--LVGVLGKCGHLFEAQQFIEQ 439
+ ++G LV + KCG + A++ ++
Sbjct: 148 -DADVFVGSSLVDMYAKCGEIVYARKMFDE 176
>sp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protein At3g46790,
chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1
Length = 657
Score = 236 bits (601), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 135/406 (33%), Positives = 212/406 (52%), Gaps = 34/406 (8%)
Query: 251 ADLARLCQEGKVKEAI----ELM--DKGVKADASCFYTLFELCGNPKWYENAKKVHDYFL 304
A +A + GK EA+ E+M K ++ ++ + C + E K +H Y L
Sbjct: 253 AMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYIL 312
Query: 305 QSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQ 364
+ + L + + ++ MYG+CG + +RVFD M DR + SW+ +I+ Y +G G + +Q
Sbjct: 313 RRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQ 372
Query: 365 LFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVL 424
+FE+M G P TF++V AC +EE FE+M + GI P EHY +V +L
Sbjct: 373 IFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLL 432
Query: 425 GKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPK 484
G+ L EA + + Q + EP + W +L RIHG+++L + A + L+P A
Sbjct: 433 GRANRLDEAAKMV-QDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGNY 491
Query: 485 KIPTPPPKKRTAISILDGKSRLVEFR--------------------------NPTLYRDD 518
+ + + +L+E R NP + +
Sbjct: 492 VLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSVDEFNPLMEQIH 551
Query: 519 EKLKALNQ-MKESTYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRII 577
L L + MKE Y+P T+ VL++++ E KE+ +L HSE+LA+A+GLI+T P+RI
Sbjct: 552 AFLVKLAEDMKEKGYIPQTKGVLYELETEEKERIVLGHSEKLALAFGLINTSKGEPIRIT 611
Query: 578 KNLRVCGDCHNAIKIMSRIVGRELIVRDNKRFHHFKDGKCSCGDYW 623
KNLR+C DCH K +S+ + +E++VRD RFH FK+G CSCGDYW
Sbjct: 612 KNLRLCEDCHLFTKFISKFMEKEILVRDVNRFHRFKNGVCSCGDYW 657
Score = 77.4 bits (189), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 72/138 (52%)
Query: 256 LCQEGKVKEAIELMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLN 315
LC+EGK+K+AI ++ + + L CG+ +A +VH + L + D L
Sbjct: 56 LCKEGKLKQAIRVLSQESSPSQQTYELLILCCGHRSSLSDALRVHRHILDNGSDQDPFLA 115
Query: 316 NKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQ 375
K+I MY GS+ AR+VFD R++ W+ + G G+E L L+ +M ++G++
Sbjct: 116 TKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVE 175
Query: 376 PNEQTFLAVFSACGSADA 393
+ T+ V AC +++
Sbjct: 176 SDRFTYTYVLKACVASEC 193
Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 89/197 (45%), Gaps = 11/197 (5%)
Query: 272 GVKADASCFYTLFELCGNPKWYEN----AKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGS 327
GV++D + + + C + N K++H + + + + +++MY + G
Sbjct: 173 GVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGC 232
Query: 328 MTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRK--LGLQPNEQTFLAVF 385
+ A VF M R++ SW MI YA NG E L+ F +M + PN T ++V
Sbjct: 233 VDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVL 292
Query: 386 SACGSADAIEEA-FIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFE 444
AC S A+E+ IH ++ G+ LV + G+CG L Q+ ++ +
Sbjct: 293 QACASLAALEQGKLIHGYILRR--GLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRD 350
Query: 445 PTAEFWEALRNYARIHG 461
+ W +L + +HG
Sbjct: 351 VVS--WNSLISSYGVHG 365
>sp|Q9LIC3|PP227_ARATH Putative pentatricopeptide repeat-containing protein At3g13770,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H85 PE=3
SV=1
Length = 628
Score = 235 bits (600), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 139/406 (34%), Positives = 222/406 (54%), Gaps = 34/406 (8%)
Query: 251 ADLARLCQEGKVKEAIELMDK----GVKADASCFYTLFELCGNPKWYENAKKVHDYFLQS 306
A +A Q G +EA+E+ + G+ + + +L ++ K+ H + L+
Sbjct: 224 AIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRR 283
Query: 307 TIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLF 366
+ VL N +I+MY KCG+++ ARR+FD+M +R+ SW+ M+ GY+ +GLG E L+LF
Sbjct: 284 ELPFYAVLQNSLIDMYSKCGNLSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLELF 343
Query: 367 EQMR-KLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKS-EFGISPGTEHYLGLVGVL 424
MR + ++P+ T LAV S C + F+ M + E+G PGTEHY +V +L
Sbjct: 344 RLMRDEKRVKPDAVTLLAVLSGCSHGRMEDTGLNIFDGMVAGEYGTKPGTEHYGCIVDML 403
Query: 425 GKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPK 484
G+ G + EA +FI +++P +PTA +L R+H +D+ + +++++P A
Sbjct: 404 GRAGRIDEAFEFI-KRMPSKPTAGVLGSLLGACRVHLSVDIGESVGRRLIEIEPENAGNY 462
Query: 485 KIPT---------------PPPKKRTAISILDGKSRL--------VEFRNPTLYRDDEKL 521
I + + A++ G+S + + T R +E L
Sbjct: 463 VILSNLYASAGRWADVNNVRAMMMQKAVTKEPGRSWIQHEQTLHYFHANDRTHPRREEVL 522
Query: 522 KALNQ----MKESTYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRII 577
+ + MK++ YVPD VL+D+D+E KE+ LL HSE+LA+ +GLI+T P+R+
Sbjct: 523 AKMKEISIKMKQAGYVPDLSCVLYDVDEEQKEKMLLGHSEKLALTFGLIATGEGIPIRVF 582
Query: 578 KNLRVCGDCHNAIKIMSRIVGRELIVRDNKRFHHFKDGKCSCGDYW 623
KNLR+C DCHN KI S++ RE+ +RD RFH DG CSCGDYW
Sbjct: 583 KNLRICVDCHNFAKIFSKVFEREVSLRDKNRFHQIVDGICSCGDYW 628
Score = 79.3 bits (194), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 79/147 (53%), Gaps = 1/147 (0%)
Query: 249 SVADLARLCQEGKVKEAI-ELMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQST 307
++ +++LC G+++EA+ E+ G + + L C + + + ++VH + +++
Sbjct: 23 TILPISQLCSNGRLQEALLEMAMLGPEMGFHGYDALLNACLDKRALRDGQRVHAHMIKTR 82
Query: 308 IRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFE 367
L +++ YGKC + DAR+V D M ++++ SW MI+ Y+ G E L +F
Sbjct: 83 YLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFA 142
Query: 368 QMRKLGLQPNEQTFLAVFSACGSADAI 394
+M + +PNE TF V ++C A +
Sbjct: 143 EMMRSDGKPNEFTFATVLTSCIRASGL 169
Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/259 (22%), Positives = 118/259 (45%), Gaps = 19/259 (7%)
Query: 251 ADLARLCQEGKVKEAIELMDKGVKADAS----CFYTLFELCGNPKWYENAKKVHDYFLQS 306
A ++R Q G EA+ + + +++D F T+ C K++H ++
Sbjct: 123 AMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQIHGLIVKW 182
Query: 307 TIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLF 366
+ + + +++MY K G + +AR +F+ + +R + S +I GYA GL +E L++F
Sbjct: 183 NYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMF 242
Query: 367 EQMRKLGLQPNEQTFLAVFSACGSADAIEEAF-IHFESMKSEFGISPGTEHYLGLVGVLG 425
++ G+ PN T+ ++ +A ++ H ++ E ++ L+ +
Sbjct: 243 HRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQN--SLIDMYS 300
Query: 426 KCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKK 485
KCG+L A++ + +P E TA W A+ HG +++L D K+
Sbjct: 301 KCGNLSYARRLFDN-MP-ERTAISWNAMLVGYSKHG-------LGREVLELFRLMRDEKR 351
Query: 486 IPTPPPKKRTAISILDGKS 504
+ P T +++L G S
Sbjct: 352 V---KPDAVTLLAVLSGCS 367
>sp|Q9FRI5|PPR57_ARATH Pentatricopeptide repeat-containing protein At1g25360
OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1
Length = 790
Score = 235 bits (600), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 128/365 (35%), Positives = 201/365 (55%), Gaps = 29/365 (7%)
Query: 287 CGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSW 346
C Y N ++ H L+ L N +I MY KCG + +AR+VF M SW
Sbjct: 427 CAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVSW 486
Query: 347 HLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKS 406
+ +I +G G E + ++E+M K G++P+ T L V +AC A +++ +F+SM++
Sbjct: 487 NALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGRKYFDSMET 546
Query: 407 EFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLE 466
+ I PG +HY L+ +L + G +A+ IE LPF+PTAE WEAL + R+HG+++L
Sbjct: 547 VYRIPPGADHYARLIDLLCRSGKFSDAESVIES-LPFKPTAEIWEALLSGCRVHGNMELG 605
Query: 467 DHAEELMVDLDPSKADP---------------------KKIPTPPPKKRTAISILDGKSR 505
A + + L P K + KK A S ++ +++
Sbjct: 606 IIAADKLFGLIPEHDGTYMLLSNMHAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQ 665
Query: 506 LVEFR-NPTLYRDDEKLKALNQ-----MKESTYVPDTRYVLHDIDQEA-KEQALLYHSER 558
+ F + T + + E + Q M+ YVPDT +VLHD++ + KE L HSE+
Sbjct: 666 VHTFLVDDTSHPEAEAVYIYLQDLGKEMRRLGYVPDTSFVLHDVESDGHKEDMLTTHSEK 725
Query: 559 LAIAYGLISTPARTPLRIIKNLRVCGDCHNAIKIMSRIVGRELIVRDNKRFHHFKDGKCS 618
+A+A+GL+ P T +RI KNLR CGDCHN + +S +V R++I+RD KRFHHF++G+CS
Sbjct: 726 IAVAFGLMKLPPGTTIRIFKNLRTCGDCHNFFRFLSWVVQRDIILRDRKRFHHFRNGECS 785
Query: 619 CGDYW 623
CG++W
Sbjct: 786 CGNFW 790
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 109/246 (44%), Gaps = 57/246 (23%)
Query: 260 GKVKEAIELMDK----GVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVL- 314
G +EA+E++ + G++ D + ++ C + K+VH Y L+ R D
Sbjct: 265 GFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLR---REDFSFH 321
Query: 315 -NNKVIEMYGKCGSMTDARRVFD-------------------------------HMADRS 342
+N ++ +Y KCG +AR +F+ M +++
Sbjct: 322 FDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKN 381
Query: 343 MDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFI--- 399
+ SW +MI+G A+NG G+EGL+LF M++ G +P + F +C A+ A+
Sbjct: 382 ILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSC----AVLGAYCNGQ 437
Query: 400 --HFESMKSEF--GISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRN 455
H + +K F +S G L+ + KCG + EA+Q + + +P + W AL
Sbjct: 438 QYHAQLLKIGFDSSLSAGN----ALITMYAKCGVVEEARQ-VFRTMPCLDSVS-WNALIA 491
Query: 456 YARIHG 461
HG
Sbjct: 492 ALGQHG 497
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 72/302 (23%), Positives = 118/302 (39%), Gaps = 72/302 (23%)
Query: 212 ARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVK-------- 263
AR + ++S P+++ C +GD L V + A +C V
Sbjct: 68 ARQLFDEISE----PDKIARTTMVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMITGF 123
Query: 264 -------EAIELMDK----GVKADASCFYTLFELCGNPKWYENAKKV---HDYFLQSTIR 309
AI L K G K D F ++ L G ++ K+ H L+S
Sbjct: 124 SHNNDGYSAINLFCKMKHEGFKPDNFTFASV--LAGLALVADDEKQCVQFHAAALKSGAG 181
Query: 310 GDLVLNNKVIEMYGKCGS----MTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQL 365
++N ++ +Y KC S + AR+VFD + ++ SW M+ GY NG D G +L
Sbjct: 182 YITSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEEL 241
Query: 366 FEQM-----------------------------RKL---GLQPNEQTFLAVFSACGSADA 393
E M R++ G++ +E T+ +V AC +A
Sbjct: 242 LEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGL 301
Query: 394 IEEAF-IHFESMKSEFGISPGTEHYL-GLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWE 451
++ +H ++ E + H+ LV + KCG EA+ E K+P + W
Sbjct: 302 LQLGKQVHAYVLRRE----DFSFHFDNSLVSLYYKCGKFDEARAIFE-KMPAKDLVS-WN 355
Query: 452 AL 453
AL
Sbjct: 356 AL 357
>sp|Q9M4P3|PP316_ARATH Pentatricopeptide repeat-containing protein At4g16835,
mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=3
Length = 656
Score = 235 bits (599), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 124/385 (32%), Positives = 212/385 (55%), Gaps = 32/385 (8%)
Query: 268 LMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGS 327
++++G++ ++S + C + +++H +ST+ D+ +I MY KCG
Sbjct: 275 MLEEGIRPNSSGLSSALLGCSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGE 334
Query: 328 MTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSA 387
+ DA ++F+ M + + +W+ MI+GYA +G D+ L LF +M ++P+ TF+AV A
Sbjct: 335 LGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLA 394
Query: 388 CGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTA 447
C A + +FESM ++ + P +HY +V +LG+ G L EA + I + +PF P A
Sbjct: 395 CNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLI-RSMPFRPHA 453
Query: 448 EFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADP---------------------KKI 486
+ L R+H +++L + A E ++ L+ A K++
Sbjct: 454 AVFGTLLGACRVHKNVELAEFAAEKLLQLNSQNAAGYVQLANIYASKNRWEDVARVRKRM 513
Query: 487 PTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMKE--------STYVPDTRY 538
K S ++ ++++ FR+ R +L ++++ + + Y P+ +
Sbjct: 514 KESNVVKVPGYSWIEIRNKVHHFRSSD--RIHPELDSIHKKLKELEKKMKLAGYKPELEF 571
Query: 539 VLHDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRVCGDCHNAIKIMSRIVG 598
LH++++E KE+ LL+HSE+LA+A+G I P + +++ KNLR+CGDCH AIK +S I
Sbjct: 572 ALHNVEEEQKEKLLLWHSEKLAVAFGCIKLPQGSQIQVFKNLRICGDCHKAIKFISEIEK 631
Query: 599 RELIVRDNKRFHHFKDGKCSCGDYW 623
RE+IVRD RFHHFKDG CSCGDYW
Sbjct: 632 REIIVRDTTRFHHFKDGSCSCGDYW 656
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 80/172 (46%), Gaps = 7/172 (4%)
Query: 295 NAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVF-DHMADRSMDSWHLMINGY 353
+ +K +F + +RG +V +I Y K + A +F D ++++ +W+ MI+GY
Sbjct: 201 DLEKASHFFKVAPVRG-VVAWTAMITGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGY 259
Query: 354 ADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAF-IHFESMKSEFGISP 412
+N ++GL+LF M + G++PN + C A++ IH + S+ +
Sbjct: 260 VENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQLGRQIH--QIVSKSTLCN 317
Query: 413 GTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDID 464
L+ + KCG L +A + E + A W A+ + HG+ D
Sbjct: 318 DVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVA--WNAMISGYAQHGNAD 367
Score = 37.0 bits (84), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 77/179 (43%), Gaps = 13/179 (7%)
Query: 243 DQVLPPSVADLARLCQEGKVKEAIELMDKGVKADASCFY--TLFELCGNPKWYENAKKVH 300
DQ+ P + +AR + G + A+ + G++A + + L + +P A ++
Sbjct: 59 DQIFPLN-KIIARCVRSGDIDGALRVF-HGMRAKNTITWNSLLIGISKDPSRMMEAHQLF 116
Query: 301 DYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGD 360
D + D N ++ Y + + A+ FD M + SW+ MI GYA G +
Sbjct: 117 DEIPEP----DTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEME 172
Query: 361 EGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLG 419
+ +LF M ++ NE ++ A+ S +E+A HF + G+ T G
Sbjct: 173 KARELFYSM----MEKNEVSWNAMISGYIECGDLEKA-SHFFKVAPVRGVVAWTAMITG 226
>sp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g49142
OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1
Length = 686
Score = 234 bits (598), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 133/398 (33%), Positives = 205/398 (51%), Gaps = 41/398 (10%)
Query: 264 EAIELMDK----GVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVI 319
EA+EL + G + DA ++ CG+ KK+H Y + + +L+L N +I
Sbjct: 292 EAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALI 351
Query: 320 EMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQ 379
+MY KCG + AR VF++M R + SW MI+ Y +G G + + LF +++ GL P+
Sbjct: 352 DMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSI 411
Query: 380 TFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQ 439
F+ +AC A +EE F+ M + I+P EH +V +LG+ G + EA +FI Q
Sbjct: 412 AFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFI-Q 470
Query: 440 KLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKA------------------ 481
+ EP W AL R+H D D+ A + + L P ++
Sbjct: 471 DMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEE 530
Query: 482 --------DPKKIPTPPPKKRTAISILDGKSRLVEFRNP---TLYRDDEKLKALNQMKES 530
K + P ++ + + + +P +YR+ + L + +MKE
Sbjct: 531 VTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSDEIYRELDVL--VKKMKEL 588
Query: 531 TYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTP-----ARTPLRIIKNLRVCGD 585
YVPD+ LHD+++E KE L HSE+LAI + L++T + +RI KNLR+CGD
Sbjct: 589 GYVPDSESALHDVEEEDKETHLAVHSEKLAIVFALMNTKEEEEDSNNTIRITKNLRICGD 648
Query: 586 CHNAIKIMSRIVGRELIVRDNKRFHHFKDGKCSCGDYW 623
CH A K++S+I RE+I+RD RFH F+ G CSCGDYW
Sbjct: 649 CHVAAKLISQITSREIIIRDTNRFHVFRFGVCSCGDYW 686
Score = 69.3 bits (168), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 72/144 (50%), Gaps = 3/144 (2%)
Query: 297 KKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADN 356
+ VH + +R + L K++ Y + AR+VFD + +R++ ++MI Y +N
Sbjct: 59 RTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNN 118
Query: 357 GLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAF-IHFESMKSEFGISPGTE 415
G EG+++F M ++P+ TF V AC + I IH + K G+S
Sbjct: 119 GFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATK--VGLSSTLF 176
Query: 416 HYLGLVGVLGKCGHLFEAQQFIEQ 439
GLV + GKCG L EA+ +++
Sbjct: 177 VGNGLVSMYGKCGFLSEARLVLDE 200
Score = 63.2 bits (152), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 58/115 (50%)
Query: 273 VKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDAR 332
V+ D F + + C +K+H + + L + N ++ MYGKCG +++AR
Sbjct: 136 VRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEAR 195
Query: 333 RVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSA 387
V D M+ R + SW+ ++ GYA N D+ L++ +M + + + T ++ A
Sbjct: 196 LVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPA 250
>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2
SV=1
Length = 871
Score = 234 bits (598), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 125/364 (34%), Positives = 197/364 (54%), Gaps = 28/364 (7%)
Query: 287 CGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSW 346
C + ++ +++H Y +++ D + N +++MY KCG++ A +FD +A + + SW
Sbjct: 509 CASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSW 568
Query: 347 HLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKS 406
+MI GY +G G E + LF QMR+ G++ +E +F+++ AC + ++E + F M+
Sbjct: 569 TVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRH 628
Query: 407 EFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLE 466
E I P EHY +V +L + G L +A +FIE +P P A W AL RIH D+ L
Sbjct: 629 ECKIEPTVEHYACIVDMLARTGDLIKAYRFIEN-MPIPPDATIWGALLCGCRIHHDVKLA 687
Query: 467 DHAEELMVDLDPS---------------------KADPKKIPTPPPKKRTAISILDGKSR 505
+ E + +L+P K K+I +K S ++ K R
Sbjct: 688 EKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGR 747
Query: 506 LVEF-----RNPTLYRDDEKLKALN-QMKESTYVPDTRYVLHDIDQEAKEQALLYHSERL 559
+ F NP + L+ + +M E Y P T+Y L D ++ KE+AL HSE+L
Sbjct: 748 VNIFVAGDSSNPETENIEAFLRKVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKL 807
Query: 560 AIAYGLISTPARTPLRIIKNLRVCGDCHNAIKIMSRIVGRELIVRDNKRFHHFKDGKCSC 619
A+A G+IS+ +R+ KNLRVCGDCH K MS++ RE+++RD+ RFH FKDG CSC
Sbjct: 808 AMALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSC 867
Query: 620 GDYW 623
+W
Sbjct: 868 RGFW 871
Score = 87.4 bits (215), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 89/170 (52%), Gaps = 3/170 (1%)
Query: 266 IELMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKC 325
++++ G++ D + ++F C + + + VH +++ + N +++MY KC
Sbjct: 285 VQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKC 344
Query: 326 GSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVF 385
G + A+ VF M+DRS+ S+ MI GYA GL E ++LFE+M + G+ P+ T AV
Sbjct: 345 GDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVL 404
Query: 386 SACGSADAIEEA-FIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQ 434
+ C ++E +H +++ G + L+ + KCG + EA+
Sbjct: 405 NCCARYRLLDEGKRVHEWIKENDLGFDIFVSN--ALMDMYAKCGSMQEAE 452
Score = 84.7 bits (208), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 98/202 (48%), Gaps = 8/202 (3%)
Query: 243 DQVLPPSVADLARLCQEGKVKEAIELMDK----GVKADASCFYTLFELCGNPKWYENAKK 298
D+ + + +A +EG EA++L ++ G+ D + C + + K+
Sbjct: 359 DRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKR 418
Query: 299 VHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGL 358
VH++ ++ + D+ ++N +++MY KCGSM +A VF M + + SW+ +I GY+ N
Sbjct: 419 VHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCY 478
Query: 359 GDEGLQLFE-QMRKLGLQPNEQTFLAVFSACGSADAIEEAF-IHFESMKSEFGISPGTEH 416
+E L LF + + P+E+T V AC S A ++ IH M++ + +
Sbjct: 479 ANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVAN 538
Query: 417 YLGLVGVLGKCGHLFEAQQFIE 438
LV + KCG L A +
Sbjct: 539 --SLVDMYAKCGALLLAHMLFD 558
Score = 77.4 bits (189), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 96/193 (49%), Gaps = 4/193 (2%)
Query: 267 ELMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCG 326
++M GV+ D+ F + + + + +++H + L+S + N ++ Y K
Sbjct: 185 KMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQ 244
Query: 327 SMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFS 386
+ AR+VFD M +R + SW+ +INGY NGL ++GL +F QM G++ + T ++VF+
Sbjct: 245 RVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFA 304
Query: 387 ACGSADAIEEA-FIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEP 445
C + I +H +K+ F S L+ + KCG L ++ + + +++
Sbjct: 305 GCADSRLISLGRAVHSIGVKACF--SREDRFCNTLLDMYSKCGDL-DSAKAVFREMSDRS 361
Query: 446 TAEFWEALRNYAR 458
+ + YAR
Sbjct: 362 VVSYTSMIAGYAR 374
Score = 67.0 bits (162), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 90/187 (48%), Gaps = 7/187 (3%)
Query: 228 QLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDKGVKADAS--CFYTLFE 285
L V + ++ D+ + + L R C+ G ++ A++L+ K D ++ +
Sbjct: 43 SLRTVSDCVDSITTFDRSVTDANTQLRRFCESGNLENAVKLLCVSGKWDIDPRTLCSVLQ 102
Query: 286 LCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDS 345
LC + K ++ K+V ++ + D L +K+ MY CG + +A RVFD +
Sbjct: 103 LCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALF 162
Query: 346 WHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAV---FSACGSADAIEEAFIHFE 402
W++++N A +G + LF++M G++ + TF V FS+ S E+ +H
Sbjct: 163 WNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQ--LHGF 220
Query: 403 SMKSEFG 409
+KS FG
Sbjct: 221 ILKSGFG 227
>sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2
SV=2
Length = 890
Score = 233 bits (594), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 120/378 (31%), Positives = 209/378 (55%), Gaps = 27/378 (7%)
Query: 273 VKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDAR 332
+K ++ T+ C K++H Y +++ + D+ + + +++MY KCG + +R
Sbjct: 513 LKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSR 572
Query: 333 RVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSAD 392
+VFD + +++ +W+++I Y +G G E + L M G++PNE TF++VF+AC +
Sbjct: 573 KVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSG 632
Query: 393 AIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEA 452
++E F MK ++G+ P ++HY +V +LG+ G + EA Q + A W +
Sbjct: 633 MVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSS 692
Query: 453 LRNYARIHGDIDLEDHAEELMVDLDPSKAD---------------------PKKIPTPPP 491
L +RIH ++++ + A + ++ L+P+ A + +
Sbjct: 693 LLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGV 752
Query: 492 KKRTAISILDGKSRLVEF-RNPTLYRDDEKLKA-----LNQMKESTYVPDTRYVLHDIDQ 545
+K S ++ + +F + + EKL +M++ YVPDT VLH++++
Sbjct: 753 RKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEE 812
Query: 546 EAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRVCGDCHNAIKIMSRIVGRELIVRD 605
+ KE L HSE+LAIA+G+++T T +R+ KNLRVC DCH A K +S+IV RE+I+RD
Sbjct: 813 DEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRD 872
Query: 606 NKRFHHFKDGKCSCGDYW 623
+RFH FK+G CSCGDYW
Sbjct: 873 VRRFHRFKNGTCSCGDYW 890
Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 74/147 (50%), Gaps = 6/147 (4%)
Query: 253 LARLCQEGKVKEAIE----LMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQ-ST 307
L+ LCQ ++ EA+E ++ +GV+ D ++ C + + K++H Y L+ +
Sbjct: 274 LSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGS 333
Query: 308 IRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFE 367
+ + + + +++MY C + RRVFD M DR + W+ MI GY+ N E L LF
Sbjct: 334 LDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFI 393
Query: 368 QMRK-LGLQPNEQTFLAVFSACGSADA 393
M + GL N T V AC + A
Sbjct: 394 GMEESAGLLANSTTMAGVVPACVRSGA 420
Score = 66.6 bits (161), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 91/196 (46%), Gaps = 23/196 (11%)
Query: 263 KEAIELM-----DKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNK 317
KEA+ L G+ A+++ + C + + +H + ++ + D + N
Sbjct: 386 KEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNT 445
Query: 318 VIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKL----- 372
+++MY + G + A R+F M DR + +W+ MI GY + ++ L L +M+ L
Sbjct: 446 LMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVS 505
Query: 373 ------GLQPNEQTFLAVFSACGSADAIEEAF-IHFESMKSEFG--ISPGTEHYLGLVGV 423
L+PN T + + +C + A+ + IH ++K+ ++ G+ LV +
Sbjct: 506 KGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGS----ALVDM 561
Query: 424 LGKCGHLFEAQQFIEQ 439
KCG L +++ +Q
Sbjct: 562 YAKCGCLQMSRKVFDQ 577
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 71/145 (48%), Gaps = 12/145 (8%)
Query: 253 LARLCQEGKVKEAIE----LMDKGVKADASCFYTLFELCGN---PKWYENAKKVHDYFLQ 305
++ LC K + A+E ++D+ V+ + ++ C N P+ K+VH Y L+
Sbjct: 171 ISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLR 230
Query: 306 STIRGDL--VLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGL 363
+G+L + N ++ MYGK G + ++ + R + +W+ +++ N E L
Sbjct: 231 ---KGELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEAL 287
Query: 364 QLFEQMRKLGLQPNEQTFLAVFSAC 388
+ +M G++P+E T +V AC
Sbjct: 288 EYLREMVLEGVEPDEFTISSVLPAC 312
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 62/124 (50%), Gaps = 1/124 (0%)
Query: 266 IELMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLV-LNNKVIEMYGK 324
++++ G+K D F L + + + E K++H + + D V + N ++ +Y K
Sbjct: 86 VDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRK 145
Query: 325 CGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAV 384
CG +VFD +++R+ SW+ +I+ + L+ F M ++P+ T ++V
Sbjct: 146 CGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSV 205
Query: 385 FSAC 388
+AC
Sbjct: 206 VTAC 209
>sp|Q9SN85|PP267_ARATH Pentatricopeptide repeat-containing protein At3g47530
OS=Arabidopsis thaliana GN=PCMP-H76 PE=2 SV=1
Length = 591
Score = 229 bits (584), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 133/389 (34%), Positives = 201/389 (51%), Gaps = 40/389 (10%)
Query: 269 MDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSM 328
+D VK D + C N + K+VHD+ ++ + G L L+N ++ MY +CGSM
Sbjct: 209 VDGCVKPDGVTCLLALQACANLGALDFGKQVHDFIDENGLSGALNLSNTLVSMYSRCGSM 268
Query: 329 TDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSAC 388
A +VF M +R++ SW +I+G A NG G E ++ F +M K G+ P EQT + SAC
Sbjct: 269 DKAYQVFYGMRERNVVSWTALISGLAMNGFGKEAIEAFNEMLKFGISPEEQTLTGLLSAC 328
Query: 389 GSADAIEEAFIHFESMKS-EFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTA 447
+ + E + F+ M+S EF I P HY +V +LG+ L +A I + + +P +
Sbjct: 329 SHSGLVAEGMMFFDRMRSGEFKIKPNLHHYGCVVDLLGRARLLDKAYSLI-KSMEMKPDS 387
Query: 448 EFWEALRNYARIHGDIDLEDHAEELMVDLDPSKA-------------------------- 481
W L R+HGD++L + +++L +A
Sbjct: 388 TIWRTLLGACRVHGDVELGERVISHLIELKAEEAGDYVLLLNTYSTVGKWEKVTELRSLM 447
Query: 482 DPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLY--RDDEKLKAL----NQMKESTYVPD 535
K+I T P S ++ + + EF + R +E K L Q+K + YV +
Sbjct: 448 KEKRIHTKP-----GCSAIELQGTVHEFIVDDVSHPRKEEIYKMLAEINQQLKIAGYVAE 502
Query: 536 TRYVLHDID-QEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRVCGDCHNAIKIMS 594
LH+++ +E K AL YHSE+LAIA+G++ TP T +R+ KNLR C DCHN K +S
Sbjct: 503 ITSELHNLESEEEKGYALRYHSEKLAIAFGILVTPPGTTIRVTKNLRTCVDCHNFAKFVS 562
Query: 595 RIVGRELIVRDNKRFHHFKDGKCSCGDYW 623
+ R +IVRD RFHHFK G CSC D+W
Sbjct: 563 DVYDRIVIVRDRSRFHHFKGGSCSCNDFW 591
Score = 49.7 bits (117), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 64/141 (45%), Gaps = 4/141 (2%)
Query: 298 KVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNG 357
++H D +L ++++Y C + TDA +VFD + R SW+++ + Y N
Sbjct: 134 QIHGKIFSDGFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPKRDTVSWNVLFSCYLRNK 193
Query: 358 LGDEGLQLFEQMR---KLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGT 414
+ L LF++M+ ++P+ T L AC + A++ E G+S
Sbjct: 194 RTRDVLVLFDKMKNDVDGCVKPDGVTCLLALQACANLGALDFG-KQVHDFIDENGLSGAL 252
Query: 415 EHYLGLVGVLGKCGHLFEAQQ 435
LV + +CG + +A Q
Sbjct: 253 NLSNTLVSMYSRCGSMDKAYQ 273
>sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610
OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1
Length = 868
Score = 226 bits (577), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 139/416 (33%), Positives = 216/416 (51%), Gaps = 38/416 (9%)
Query: 243 DQVLPPSVADLARLCQEGKVKEAI----ELMDKGVKADASCFYTLFELCGNPKW-YENAK 297
D+ + A LA Q G+ + AI EL G+K + F ++ +C K
Sbjct: 456 DKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGK 515
Query: 298 KVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNG 357
+ H + ++S + L +++ ++ MY K G++ A VF ++ + SW+ MI+GYA +G
Sbjct: 516 QFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHG 575
Query: 358 LGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHY 417
+ L +F++M+K ++ + TF+ VF+AC A +EE +F+ M + I+P EH
Sbjct: 576 QAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHN 635
Query: 418 LGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVDLD 477
+V + + G L +A + IE +P + W + R+H +L A E ++ +
Sbjct: 636 SCMVDLYSRAGQLEKAMKVIEN-MPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMK 694
Query: 478 PS--------------------KADPKKIPTPP-PKKRTAISILDGKSRLVEFR------ 510
P +A +K+ KK S ++ K++ F
Sbjct: 695 PEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSH 754
Query: 511 --NPTLYRDDEKLKALNQMKESTYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLIST 568
+Y E L ++K+ Y PDT YVL DID E KE L HSERLAIA+GLI+T
Sbjct: 755 PLKDQIYMKLEDLS--TRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIAT 812
Query: 569 PARTPLRIIKNLRVCGDCHNAIKIMSRIVGRELIVRDNKRFHHF-KDGKCSCGDYW 623
P +PL IIKNLRVCGDCH IK++++I RE++VRD+ RFHHF DG CSCGD+W
Sbjct: 813 PKGSPLLIIKNLRVCGDCHLVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 868
Score = 70.9 bits (172), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 83/170 (48%), Gaps = 6/170 (3%)
Query: 222 GHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELM----DKGVKADA 277
G ++L N N ++ P D+ ++ L ++G+ +EA L G++ D
Sbjct: 36 GTVSSSRLYNAHNLFDKSPGRDR--ESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDC 93
Query: 278 SCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDH 337
S F ++ ++ +++H ++ D+ + +++ Y K + D R+VFD
Sbjct: 94 SIFSSVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDE 153
Query: 338 MADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSA 387
M +R++ +W +I+GYA N + DE L LF +M+ G QPN TF A
Sbjct: 154 MKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGV 203
Score = 64.3 bits (155), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 55/92 (59%)
Query: 298 KVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNG 357
+VH +++ + + ++N +I +Y KCG++ AR +FD +S+ +W+ MI+GYA NG
Sbjct: 215 QVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANG 274
Query: 358 LGDEGLQLFEQMRKLGLQPNEQTFLAVFSACG 389
L E L +F MR ++ +E +F +V C
Sbjct: 275 LDLEALGMFYSMRLNYVRLSESSFASVIKLCA 306
Score = 63.5 bits (153), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 62/116 (53%), Gaps = 1/116 (0%)
Query: 273 VKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDAR 332
V+ S F ++ +LC N K +++H ++ D + ++ Y KC +M DA
Sbjct: 291 VRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDAL 350
Query: 333 RVFDHMA-DRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSA 387
R+F + ++ SW MI+G+ N +E + LF +M++ G++PNE T+ + +A
Sbjct: 351 RLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTA 406
Score = 60.5 bits (145), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 54/96 (56%)
Query: 298 KVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNG 357
+VH +++ + +++ Y K G + +A +VF + D+ + +W M+ GYA G
Sbjct: 414 EVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTG 473
Query: 358 LGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADA 393
+ +++F ++ K G++PNE TF ++ + C + +A
Sbjct: 474 ETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNA 509
>sp|Q9LZ19|PP364_ARATH Pentatricopeptide repeat-containing protein At5g04780
OS=Arabidopsis thaliana GN=PCMP-H16 PE=2 SV=2
Length = 635
Score = 226 bits (575), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 118/364 (32%), Positives = 197/364 (54%), Gaps = 28/364 (7%)
Query: 287 CGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSW 346
C N K++H +S ++ + + ++MY KCGS+ ++ +F + +++++ W
Sbjct: 273 CSNLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELW 332
Query: 347 HLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKS 406
+ +I+G+A + E + LFE+M++ G+ PNE TF ++ S CG +EE F+ M++
Sbjct: 333 NTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRT 392
Query: 407 EFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLE 466
+G+SP HY +V +LG+ G L EA + I + +PF+PTA W +L R++ +++L
Sbjct: 393 TYGLSPNVVHYSCMVDILGRAGLLSEAYELI-KSIPFDPTASIWGSLLASCRVYKNLELA 451
Query: 467 DHAEELMVDLDPSKA---------------------DPKKIPTPPPKKRTAISILDGKSR 505
+ A E + +L+P A K + KK S +D K +
Sbjct: 452 EVAAEKLFELEPENAGNHVLLSNIYAANKQWEEIAKSRKLLRDCDVKKVRGKSWIDIKDK 511
Query: 506 LVEFR-----NPTLYRDDEKLKALN-QMKESTYVPDTRYVLHDIDQEAKEQALLYHSERL 559
+ F +P + L L + ++ Y P + LHD++ KE+ L+ HSE+L
Sbjct: 512 VHTFSVGESGHPRIREICSTLDNLVIKFRKFGYKPSVEHELHDVEIGKKEELLMQHSEKL 571
Query: 560 AIAYGLISTPARTPLRIIKNLRVCGDCHNAIKIMSRIVGRELIVRDNKRFHHFKDGKCSC 619
A+ +GL+ P +P+RI+KNLR+C DCH +K S R +IVRD RFHHF DG CSC
Sbjct: 572 ALVFGLMCLPESSPVRIMKNLRICVDCHEFMKAASMATRRFIIVRDVNRFHHFSDGHCSC 631
Query: 620 GDYW 623
GD+W
Sbjct: 632 GDFW 635
Score = 95.1 bits (235), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 85/159 (53%), Gaps = 7/159 (4%)
Query: 283 LFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRS 342
+ +LC AK H ++ + GD+ L N +I Y KCG + AR+VFD M +RS
Sbjct: 67 ILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERS 126
Query: 343 MDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACG-SADAIEEAFIHF 401
+ SW+ MI Y N + E L +F +MR G + +E T +V SACG + DA+E +H
Sbjct: 127 LVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKLHC 186
Query: 402 ESMKS--EFGISPGTEHYLGLVGVLGKCGHLFEAQQFIE 438
S+K+ + + GT L+ + KCG + +A Q E
Sbjct: 187 LSVKTCIDLNLYVGT----ALLDLYAKCGMIKDAVQVFE 221
Score = 77.0 bits (188), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 90/189 (47%), Gaps = 5/189 (2%)
Query: 266 IELMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKC 325
+E+ ++G K ++ CG KK+H +++ I +L + ++++Y KC
Sbjct: 151 LEMRNEGFKFSEFTISSVLSACGVNCDALECKKLHCLSVKTCIDLNLYVGTALLDLYAKC 210
Query: 326 GSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVF 385
G + DA +VF+ M D+S +W M+ GY N +E L L+ + +++ L+ N+ T +V
Sbjct: 211 GMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVI 270
Query: 386 SACGS-ADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFE 444
AC + A IE +H KS FG + V + KCG L E+ + E
Sbjct: 271 CACSNLAALIEGKQMHAVICKSGFGSNVFVAS--SAVDMYAKCGSLRESYIIFSE--VQE 326
Query: 445 PTAEFWEAL 453
E W +
Sbjct: 327 KNLELWNTI 335
>sp|Q9FHF9|PP419_ARATH Pentatricopeptide repeat-containing protein At5g46460,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H49 PE=2
SV=1
Length = 697
Score = 226 bits (575), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 131/362 (36%), Positives = 194/362 (53%), Gaps = 30/362 (8%)
Query: 288 GNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWH 347
G W K++H ++ + D + N ++ MY G++ DA VF + +S+ SW+
Sbjct: 340 GTLDW---GKEMHGVAVKLGLETDAFVGNSLVVMYSDSGNVNDAVSVFIKIFKKSIVSWN 396
Query: 348 LMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSE 407
+I G A +G G +F QM +L +P+E TF + SAC +E+ F M S
Sbjct: 397 SIIVGCAQHGRGKWAFVIFGQMIRLNKEPDEITFTGLLSACSHCGFLEKGRKLFYYMSSG 456
Query: 408 FG-ISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLE 466
I +HY +V +LG+CG L EA++ IE ++ +P W AL + R+H D+D
Sbjct: 457 INHIDRKIQHYTCMVDILGRCGKLKEAEELIE-RMVVKPNEMVWLALLSACRMHSDVDRG 515
Query: 467 DHAEELMVDLDPSKADPKKIPT---------------PPPKKRTAISILDGKSRLV---- 507
+ A + +LD + + + K+ I G S +V
Sbjct: 516 EKAAAAIFNLDSKSSAAYVLLSNIYASAGRWSNVSKLRVKMKKNGIMKKPGSSWVVIRGK 575
Query: 508 --EFRN---PTLYRDDEKLKALNQ-MKESTYVPDTRYVLHDIDQEAKEQALLYHSERLAI 561
EF + P R EKL+ L + +KE Y PD R LHD++ E KE+ L YHSERLAI
Sbjct: 576 KHEFFSGDQPHCSRIYEKLEFLREKLKELGYAPDYRSALHDVEDEQKEEMLWYHSERLAI 635
Query: 562 AYGLISTPARTPLRIIKNLRVCGDCHNAIKIMSRIVGRELIVRDNKRFHHFKDGKCSCGD 621
A+GLI+T + + ++KNLRVC DCH IK++S +VGRE+++RD RFHHFK+G CSCGD
Sbjct: 636 AFGLINTVEGSAVTVMKNLRVCEDCHTVIKLISGVVGREIVLRDPIRFHHFKNGTCSCGD 695
Query: 622 YW 623
YW
Sbjct: 696 YW 697
Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/238 (21%), Positives = 99/238 (41%), Gaps = 9/238 (3%)
Query: 216 YQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDKGVKA 275
Y ++ G+ N+L + N ++ P D V S+ C G + A++L D+ +
Sbjct: 69 YTKMITGYTRSNRLVDALNLFDEMPVRDVVSWNSMISGCVEC--GDMNTAVKLFDEMPER 126
Query: 276 DASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVF 335
+ + C + A+++ F Q ++ D N ++ Y + G + DA ++F
Sbjct: 127 SVVSWTAMVNGCFRSGKVDQAERL---FYQMPVK-DTAAWNSMVHGYLQFGKVDDALKLF 182
Query: 336 DHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIE 395
M +++ SW MI G N E L LF+ M + ++ + F V +AC +A A
Sbjct: 183 KQMPGKNVISWTTMICGLDQNERSGEALDLFKNMLRCCIKSTSRPFTCVITACANAPAFH 242
Query: 396 EAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEAL 453
I + + G L+ C + ++++ ++K+ W AL
Sbjct: 243 MG-IQVHGLIIKLGFLYEEYVSASLITFYANCKRIGDSRKVFDEKV--HEQVAVWTAL 297
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/123 (21%), Positives = 58/123 (47%)
Query: 273 VKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDAR 332
+K+ + F + C N + +VH ++ + ++ +I Y C + D+R
Sbjct: 221 IKSTSRPFTCVITACANAPAFHMGIQVHGLIIKLGFLYEEYVSASLITFYANCKRIGDSR 280
Query: 333 RVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSAD 392
+VFD + W +++GY+ N ++ L +F M + + PN+ TF + ++C +
Sbjct: 281 KVFDEKVHEQVAVWTALLSGYSLNKKHEDALSIFSGMLRNSILPNQSTFASGLNSCSALG 340
Query: 393 AIE 395
++
Sbjct: 341 TLD 343
Score = 39.7 bits (91), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%)
Query: 314 LNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQM 369
L K+I Y + + DA +FD M R + SW+ MI+G + G + ++LF++M
Sbjct: 68 LYTKMITGYTRSNRLVDALNLFDEMPVRDVVSWNSMISGCVECGDMNTAVKLFDEM 123
>sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis
thaliana GN=PCMP-H42 PE=2 SV=2
Length = 1064
Score = 225 bits (573), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 122/355 (34%), Positives = 196/355 (55%), Gaps = 28/355 (7%)
Query: 296 AKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYAD 355
K+VH ++ + + N +I MY KCGS++DA + F ++ ++ SW+ +IN Y+
Sbjct: 711 GKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSK 770
Query: 356 NGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTE 415
+G G E L F+QM ++PN T + V SAC +++ +FESM SE+G+SP E
Sbjct: 771 HGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPE 830
Query: 416 HYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVD 475
HY+ +V +L + G L A++FI Q++P +P A W L + +H ++++ + A +++
Sbjct: 831 HYVCVVDMLTRAGLLSRAKEFI-QEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLE 889
Query: 476 LDP----------------SKADPK-----KIPTPPPKKRTAISILDGKSRLVEF----- 509
L+P K D + K+ KK S ++ K+ + F
Sbjct: 890 LEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQ 949
Query: 510 RNPTLYRDDEKLKALNQ-MKESTYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLIST 568
+P E + L + E YV D +L+++ E K+ + HSE+LAI++GL+S
Sbjct: 950 NHPLADEIHEYFQDLTKRASEIGYVQDCFSLLNELQHEQKDPIIFIHSEKLAISFGLLSL 1009
Query: 569 PARTPLRIIKNLRVCGDCHNAIKIMSRIVGRELIVRDNKRFHHFKDGKCSCGDYW 623
PA P+ ++KNLRVC DCH IK +S++ RE+IVRD RFHHF+ G CSC DYW
Sbjct: 1010 PATVPINVMKNLRVCNDCHAWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1064
Score = 70.9 bits (172), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 80/173 (46%), Gaps = 2/173 (1%)
Query: 266 IELMDKGVKADASCFYTLFELC-GNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGK 324
+ ++ + V + F + E C G ++ +++H L +R V+ N +I++Y +
Sbjct: 175 VRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSR 234
Query: 325 CGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAV 384
G + ARRVFD + + SW MI+G + N E ++LF M LG+ P F +V
Sbjct: 235 NGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSV 294
Query: 385 FSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFI 437
SAC +++E + + G S T LV + G+L A+
Sbjct: 295 LSACKKIESLEIG-EQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIF 346
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 96/197 (48%), Gaps = 7/197 (3%)
Query: 267 ELMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCG 326
+++D+G+++D C + + +++H S DL N ++ +Y +CG
Sbjct: 581 QMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCG 640
Query: 327 SMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTF-LAVF 385
+ ++ F+ +W+ +++G+ +G +E L++F +M + G+ N TF AV
Sbjct: 641 KIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVK 700
Query: 386 SACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQ-QFIEQKLPFE 444
+A +A+ + +H ++ ++ G TE L+ + KCG + +A+ QF+E E
Sbjct: 701 AASETANMKQGKQVH--AVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNE 758
Query: 445 PTAEFWEALRNYARIHG 461
+ W A+ N HG
Sbjct: 759 VS---WNAIINAYSKHG 772
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/222 (20%), Positives = 97/222 (43%), Gaps = 15/222 (6%)
Query: 257 CQEGKVKEAIELMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNN 316
C+ ++ ++ G+ F ++ C + E +++H L+ D + N
Sbjct: 268 CEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCN 327
Query: 317 KVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQP 376
++ +Y G++ A +F +M+ R +++ +ING + G G++ ++LF++M GL+P
Sbjct: 328 ALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEP 387
Query: 377 NEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQ- 435
+ T ++ AC SAD + ++ G + + L+ + KC + A
Sbjct: 388 DSNTLASLVVAC-SADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDY 446
Query: 436 FIEQKLPFEPTAEFWEA----------LRNYARIHGDIDLED 467
F+E ++ W LRN RI + +E+
Sbjct: 447 FLETEV---ENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEE 485
Score = 59.7 bits (143), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 72/161 (44%), Gaps = 5/161 (3%)
Query: 294 ENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGY 353
E +++H +++ + + + + +I+MY K G + A + A + + SW MI GY
Sbjct: 507 ELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGY 566
Query: 354 ADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEA-FIHFESMKSEFGISP 412
D+ L F QM G++ +E SAC A++E IH ++ S G S
Sbjct: 567 TQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVS--GFSS 624
Query: 413 GTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEAL 453
LV + +CG + E+ EQ + A W AL
Sbjct: 625 DLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIA--WNAL 663
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 4/107 (3%)
Query: 294 ENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGY 353
+ +K+H L+ + + L+ K+ + Y G + A +VFD M +R++ +W+ MI
Sbjct: 102 DEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWNKMIKEL 161
Query: 354 ADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSAC--GSA--DAIEE 396
A L E LF +M + PNE TF V AC GS D +E+
Sbjct: 162 ASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQ 208
Score = 40.8 bits (94), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 76/167 (45%), Gaps = 23/167 (13%)
Query: 256 LCQEGKVKEAIELMDK----GVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGD 311
L Q G ++A+EL + G++ D++ +L C +++H Y T +
Sbjct: 364 LSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAY----TTKLG 419
Query: 312 LVLNNKV----IEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDE---GLQ 364
NNK+ + +Y KC + A F ++ W++M+ Y GL D+ +
Sbjct: 420 FASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAY---GLLDDLRNSFR 476
Query: 365 LFEQMRKLGLQPNEQTFLAVFSAC---GSADAIEEAFIHFESMKSEF 408
+F QM+ + PN+ T+ ++ C G + E+ IH + +K+ F
Sbjct: 477 IFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQ--IHSQIIKTNF 521
>sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910
OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1
Length = 646
Score = 225 bits (573), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 131/399 (32%), Positives = 213/399 (53%), Gaps = 40/399 (10%)
Query: 260 GKVKEAIEL---MDKG-VKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLN 315
G K+A+E+ M KG ++ + ++ E + +H Y S IR D VL
Sbjct: 253 GFFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLG 312
Query: 316 NKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQ 375
+ +I+MY KCG + A VF+ + ++ +W MING+A +G + + F +MR+ G++
Sbjct: 313 SALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVR 372
Query: 376 PNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQ 435
P++ ++ + +AC +EE +F M S G+ P EHY +V +LG+ G L EA++
Sbjct: 373 PSDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEE 432
Query: 436 FIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADP------------ 483
FI +P +P W+AL R+ G++++ +++D+ P +
Sbjct: 433 FI-LNMPIKPDDVIWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQG 491
Query: 484 ---------KKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDE--KLKALNQM----- 527
++ +K S++D L EF + DD K K +N M
Sbjct: 492 NWSEVSEMRLRMKEKDIRKDPGCSLIDIDGVLHEF----VVEDDSHPKAKEINSMLVEIS 547
Query: 528 ---KESTYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRVCG 584
+ + Y P T VL ++++E KE L YHSE++A A+GLIST P+RI+KNLR+C
Sbjct: 548 DKLRLAGYRPITTQVLLNLEEEDKENVLHYHSEKIATAFGLISTSPGKPIRIVKNLRICE 607
Query: 585 DCHNAIKIMSRIVGRELIVRDNKRFHHFKDGKCSCGDYW 623
DCH++IK++S++ R++ VRD KRFHHF+DG CSC DYW
Sbjct: 608 DCHSSIKLISKVYKRKITVRDRKRFHHFQDGSCSCMDYW 646
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 112/230 (48%), Gaps = 23/230 (10%)
Query: 248 PSVADLARLCQEGKVKEAIEL----MDKGVKAD---ASCFYTLFELCGNPK-----WYEN 295
PSV L + GK++E ++ + G D S ++ +CG K +Y+N
Sbjct: 132 PSV--LKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKN 189
Query: 296 AKKVHDYFLQSTIR---GDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMING 352
+ D + + R G++VL N +I+ Y + G AR +FD M RS+ SW+ MI+G
Sbjct: 190 IIE-KDMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISG 248
Query: 353 YADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEA-FIHFESMKSEFGIS 411
Y+ NG + +++F +M+K ++PN T ++V A ++E ++H + S GI
Sbjct: 249 YSLNGFFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDS--GIR 306
Query: 412 PGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHG 461
L+ + KCG + E + ++LP E W A+ N IHG
Sbjct: 307 IDDVLGSALIDMYSKCG-IIEKAIHVFERLPRENVIT-WSAMINGFAIHG 354
Score = 43.1 bits (100), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 77/167 (46%), Gaps = 24/167 (14%)
Query: 283 LFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGS-------MTDARRVF 335
LF N + + ++H F++S D + +++ C + + A ++F
Sbjct: 26 LFPQINNCRTIRDLSQIHAVFIKSGQMRDTLAAAEILRF---CATSDLHHRDLDYAHKIF 82
Query: 336 DHMADRSMDSWHLMINGYADNGLGDE-----GLQLF-EQMRKLGLQPNEQTFLAVFSACG 389
+ M R+ SW+ +I G++++ DE + LF E M ++PN TF +V AC
Sbjct: 83 NQMPQRNCFSWNTIIRGFSES---DEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACA 139
Query: 390 SADAIEEAF-IHFESMKSEFGISPGTEHYLG-LVGVLGKCGHLFEAQ 434
I+E IH ++K FG G E + LV + CG + +A+
Sbjct: 140 KTGKIQEGKQIHGLALKYGFG---GDEFVMSNLVRMYVMCGFMKDAR 183
>sp|Q9ZVF4|PP140_ARATH Pentatricopeptide repeat-containing protein At2g01510,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H37 PE=3
SV=1
Length = 584
Score = 225 bits (573), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 140/412 (33%), Positives = 215/412 (52%), Gaps = 46/412 (11%)
Query: 251 ADLARLCQEGKVKEAIELMDK----GVKADASCFYTLFELCGNPKWYENAKKVHDYFLQS 306
A LA Q G A+E +K V+ D+ ++ CG E ++++D +
Sbjct: 180 AFLAVCVQTGNSAIALEYFNKMCADAVQFDSFTVVSMLSACGQLGSLEIGEEIYDRARKE 239
Query: 307 TIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLF 366
I ++++ N ++M+ KCG+ AR +F+ M R++ SW MI GYA NG E L LF
Sbjct: 240 EIDCNIIVENARLDMHLKCGNTEAARVLFEEMKQRNVVSWSTMIVGYAMNGDSREALTLF 299
Query: 367 EQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESM--KSEFGISPGTEHYLGLVGVL 424
M+ GL+PN TFL V SAC A + E +F M ++ + P EHY +V +L
Sbjct: 300 TTMQNEGLRPNYVTFLGVLSACSHAGLVNEGKRYFSLMVQSNDKNLEPRKEHYACMVDLL 359
Query: 425 GKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVD--------- 475
G+ G L EA +FI +K+P EP W AL +H D+ L +++V+
Sbjct: 360 GRSGLLEEAYEFI-KKMPVEPDTGIWGALLGACAVHRDMILGQKVADVLVETAPDIGSYH 418
Query: 476 ---------------LDPSKADPKKIPTPPPKKRTAISILDGKSRLVEF--------RNP 512
+D ++ +K+ T KK A S ++ + ++ F ++
Sbjct: 419 VLLSNIYAAAGKWDCVDKVRSKMRKLGT---KKVAAYSSVEFEGKIHFFNRGDKSHPQSK 475
Query: 513 TLY-RDDEKLKALNQMKESTYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPAR 571
+Y + DE LK + +M YVPDT V HD++ E KE +L +HSE+LAIA+GLI
Sbjct: 476 AIYEKLDEILKKIRKM---GYVPDTCSVFHDVEMEEKECSLSHHSEKLAIAFGLIKGRPG 532
Query: 572 TPLRIIKNLRVCGDCHNAIKIMSRIVGRELIVRDNKRFHHFKDGKCSCGDYW 623
P+R++KNLR C DCH K +S + E+I+RD RFHHF++G CSC ++W
Sbjct: 533 HPIRVMKNLRTCDDCHAFSKFVSSLTSTEIIMRDKNRFHHFRNGVCSCKEFW 584
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 65/144 (45%), Gaps = 5/144 (3%)
Query: 297 KKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADN 356
KK+H L++ L +++E G M AR+VFD M + W+ + GY N
Sbjct: 28 KKIHAIVLRTGFSEKNSLLTQLLENLVVIGDMCYARQVFDEMHKPRIFLWNTLFKGYVRN 87
Query: 357 GLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAF-IHFESMKSEFGISPGTE 415
L E L L+++MR LG++P+E T+ V A F +H +K FG
Sbjct: 88 QLPFESLLLYKKMRDLGVRPDEFTYPFVVKAISQLGDFSCGFALHAHVVKYGFGCLGIVA 147
Query: 416 HYLGLV----GVLGKCGHLFEAQQ 435
L ++ G L LFE+ Q
Sbjct: 148 TELVMMYMKFGELSSAEFLFESMQ 171
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.133 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 252,949,919
Number of Sequences: 539616
Number of extensions: 11430900
Number of successful extensions: 72433
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 993
Number of HSP's that attempted gapping in prelim test: 44183
Number of HSP's gapped (non-prelim): 12121
length of query: 623
length of database: 191,569,459
effective HSP length: 124
effective length of query: 499
effective length of database: 124,657,075
effective search space: 62203880425
effective search space used: 62203880425
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)